BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010363
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1U0M|A Chain A, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
pdb|1U0M|B Chain B, Crystal Structure Of 1,3,6,8-Tetrahydroxynaphthalene
Synthase (Thns) From Streptomyces Coelicolor A3(2): A
Bacterial Type Iii Polyketide Synthase (Pks) Provides
Insights Into Enzymatic Control Of Reactive Polyketide
Intermediates
Length = 382
Score = 70.9 bits (172), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/401 (23%), Positives = 155/401 (38%), Gaps = 97/401 (24%)
Query: 101 RPVYLVDFSCYKPEESRKCTKRIFMDQSRM---------TGTFTEENLQFQKKILERSGL 151
RP V EE+ + +R D ++ TG T +Q + LE G
Sbjct: 14 RPSVSVPEHVITMEETLELARRRHTDHPQLPLALRLIENTGVRTRHIVQPIEDTLEHPGF 73
Query: 152 GDSTYLPEAVLNIPPNPSMKEARKEAEAVMFGAIDELFAKTSVKPKDIGILI-VNCSLFN 210
D + E +EA+ AV+ A+D+ + DI ++I V+C+ F
Sbjct: 74 EDRNKVYE-----------REAKSRVPAVIQRALDD----AELLATDIDVIIYVSCTGFM 118
Query: 211 PTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENIT 270
PSL+A +IN + +GC+AG +I+ A++ +P + AL+++ E +
Sbjct: 119 -MPSLTAWLINEMGFDSTTRQIPIAQLGCAAGGAAINRAHDFCTAYPEANALIVACEFCS 177
Query: 271 LNWYFGN-DRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACV 329
L + + L+ N LF G AA ++ R
Sbjct: 178 LCYQPTDLGVGSLLCNGLFGDGIAAAVVRGR----------------------------- 208
Query: 330 TQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLF-------FATLVGK 382
G GV L +N G ++P +E + F L+ K
Sbjct: 209 -------GGTGVRLERN----------------GSYLIPKTEDWIMYDVKATGFHFLLDK 245
Query: 383 KLFKMKIKPYIPDFK-LAFEH---------FCIHAGGRAVLDELEKNLQLSDWHMEPSRM 432
++ ++P P K LA EH + +HAGG +LD+L L++ SR
Sbjct: 246 RV-PATMEPLAPALKELAGEHGWDASDLDFYIVHAGGPRILDDLSTFLEVDPHAFRFSRA 304
Query: 433 TLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGF 473
TL +GN +S+ + L +G +++G R FG G
Sbjct: 305 TLTEYGNIASAVVLDALRRLFDEGGVEEGARGLLAGFGPGI 345
>pdb|1TEE|A Chain A, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|B Chain B, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|C Chain C, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
pdb|1TEE|D Chain D, Crystal Structure Of C205f Mutant Of Pks18 From
Mycobacterium Tuberculosis
Length = 393
Score = 62.4 bits (150), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 42/297 (14%)
Query: 195 KPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQ 254
+ +IG+L++ S P + ++ L +I + MGC+A + ++ A N ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 255 VHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 314
HP ALV+ +E ++N F +D + +V + LF G AA+++
Sbjct: 191 AHPAMKALVVCIELFSVNAVFADDINDVVIHSLFGDGCAALVIG---------------- 234
Query: 315 VRTHKGADDNCFACVTQEEDSEGKVGVTLS-KNLMAVAGDALKTNITTLGPLVLPMSEQL 373
A QE+ GKV V S L+ D + + G + +SE L
Sbjct: 235 ------------ASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNG-ITCELSENL 281
Query: 374 LFF-----ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME 428
+ A +V + L+ ++ I D L + IH GG ++++ ++L +S
Sbjct: 282 PGYIFSGVAPVVTEMLWDNGLQ--ISDIDL----WAIHPGGPKIIEQSVRSLGISAELAA 335
Query: 429 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-QIAFGSGFKCNSAVWKALR 484
S L RFGN S SL + L + K T AFG G ++ +R
Sbjct: 336 QSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1TED|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|C Chain C, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
pdb|1TED|D Chain D, Crystal Structure Of A Type Iii Polyketide Synthase Pks18
From Mycobacterium Tuberculosis
Length = 393
Score = 62.4 bits (150), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 71/297 (23%), Positives = 123/297 (41%), Gaps = 42/297 (14%)
Query: 195 KPKDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQ 254
+ +IG+L++ S P + ++ L +I + MGC+A + ++ A N ++
Sbjct: 131 RAAEIGLLVLATSTGFIAPGVDVAIVKELGLSPSISRVVVNFMGCAAAMNALGTATNYVR 190
Query: 255 VHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 314
HP ALV+ +E ++N F +D + +V + LF G AA+++
Sbjct: 191 AHPAMKALVVCIELCSVNAVFADDINDVVIHSLFGDGCAALVIG---------------- 234
Query: 315 VRTHKGADDNCFACVTQEEDSEGKVGVTLS-KNLMAVAGDALKTNITTLGPLVLPMSEQL 373
A QE+ GKV V S L+ D + + G + +SE L
Sbjct: 235 ------------ASQVQEKLEPGKVVVRSSFSQLLDNTEDGIVLGVNHNG-ITCELSENL 281
Query: 374 LFF-----ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME 428
+ A +V + L+ ++ I D L + IH GG ++++ ++L +S
Sbjct: 282 PGYIFSGVAPVVTEMLWDNGLQ--ISDIDL----WAIHPGGPKIIEQSVRSLGISAELAA 335
Query: 429 PSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-QIAFGSGFKCNSAVWKALR 484
S L RFGN S SL + L + K T AFG G ++ +R
Sbjct: 336 QSWDVLARFGNMLSVSLIFVLETMVQQAESAKAISTGVAFAFGPGVTVEGMLFDIIR 392
>pdb|1XES|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XES|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris
pdb|1XET|A Chain A, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|B Chain B, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|C Chain C, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
pdb|1XET|D Chain D, Crystal Structure Of Stilbene Synthase From Pinus
Sylvestris, Complexed With Methylmalonyl Coa
Length = 413
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 76/389 (19%)
Query: 129 RMTGTFTEENLQFQ---KKILERSGLGDS-TYLPEAVLNIPPN-------PSMKEARKEA 177
R+TG E N + + K+I ERS + YL E +L P+ PS+ +AR+
Sbjct: 64 RITGN--EHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSL-DARQAM 120
Query: 178 EAVMFGAIDELFAKTSVKP---KDIGIL-IVNCSLFNPTPSLSAMVINHYKLRGNIISYN 233
A+ + + A+ +++ GI ++ CS TP L KL G S
Sbjct: 121 LAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCS--TTTPDLPGADFEVAKLLGLHPSVK 178
Query: 234 LGGM---GCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLF 288
G+ GC AG + +A +L + + + LVI E + + ++ LV LF
Sbjct: 179 RVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALF 238
Query: 289 RMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVG-----VT 342
G +A+++ ++ ++ + +V T +T +SEG +G V
Sbjct: 239 GDGASALIVGADPIPQVEKACFEIVWTAQT-------------VVPNSEGAIGGKVREVG 285
Query: 343 LSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEH 402
L+ L D + NI M E F KLF
Sbjct: 286 LTFQLKGAVPDLISANIENC------MVEAFSQFKISDWNKLF----------------- 322
Query: 403 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGD 462
+ +H GGRA+LD +E L L + P+R + +GN SS+ + + L + K ++ G
Sbjct: 323 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGC 381
Query: 463 RTWQ--------IAFGSGFKCNSAVWKAL 483
T FG G + V K++
Sbjct: 382 STTGEGLEMGVLFGFGPGLTIETVVLKSV 410
>pdb|1U0U|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|E Chain E, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
pdb|1U0U|F Chain F, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: Pine Stilbene Synthase Structure
Length = 397
Score = 53.9 bits (128), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 93/389 (23%), Positives = 155/389 (39%), Gaps = 76/389 (19%)
Query: 129 RMTGTFTEENLQFQ---KKILERSGLGDS-TYLPEAVLNIPPN-------PSMKEARKEA 177
R+TG E N + + K+I ERS + YL E +L P+ PS+ +AR+
Sbjct: 48 RITGN--EHNTELKDKFKRICERSAIKQRYMYLTEEILKKNPDVCAFVEVPSL-DARQAM 104
Query: 178 EAVMFGAIDELFAKTSVKP---KDIGIL-IVNCSLFNPTPSLSAMVINHYKLRGNIISYN 233
A+ + + A+ +++ GI ++ CS TP L KL G S
Sbjct: 105 LAMEVPRLAKEAAEKAIQEWGQSKSGITHLIFCS--TTTPDLPGADFEVAKLLGLHPSVK 162
Query: 234 LGGM---GCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLF 288
G+ GC AG + +A +L + + + LVI E + + ++ LV LF
Sbjct: 163 RVGVFQHGCFAGGTVLRMAKDLAENNRGARVLVICSETTAVTFRGPSETHLDSLVGQALF 222
Query: 289 RMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVG-----VT 342
G +A+++ ++ ++ + +V T +T +SEG +G V
Sbjct: 223 GDGASALIVGADPIPQVEKACFEIVWTAQT-------------VVPNSEGAIGGKVREVG 269
Query: 343 LSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEH 402
L+ L D + NI M E F KLF
Sbjct: 270 LTFQLKGAVPDLISANIENC------MVEAFSQFKISDWNKLF----------------- 306
Query: 403 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGD 462
+ +H GGRA+LD +E L L + P+R + +GN SS+ + + L + K ++ G
Sbjct: 307 WVVHPGGRAILDRVEAKLNLDPTKLIPTRHVMSEYGNMSSACVHFILDQTR-KASLQNGC 365
Query: 463 RTWQ--------IAFGSGFKCNSAVWKAL 483
T FG G + V K++
Sbjct: 366 STTGEGLEMGVLFGFGPGLTIETVVLKSV 394
>pdb|1U0V|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0V|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Of Specificity Of Type Iii Polyketide
Synthases: 18xchs Structure
pdb|1U0W|A Chain A, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|B Chain B, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|C Chain C, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
pdb|1U0W|D Chain D, An Aldol Switch Discovered In Stilbene Synthases Mediates
Cyclization Specificity Of Type Iii Polyketide
Synthases: 18xchs+resveratrol Structure
Length = 393
Score = 53.1 bits (126), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 82/342 (23%), Positives = 133/342 (38%), Gaps = 63/342 (18%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKDIGILIVN 205
YL E +L PN PS+ +AR+ A+ + + A ++K PK ++
Sbjct: 75 YLTEEILKENPNVCEYMAPSL-DARQAMLAMEVPRLGKEAAVKAIKEWGQPKSKITHLIV 133
Query: 206 CSLFNPT-PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
CS P P + LR + + GC AG + LA +L + + + LV+
Sbjct: 134 CSTTTPDLPGADYQLTKLLGLRPYVKRVGVFQHGCFAGGTVLRLAKDLAENNKGARVLVV 193
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 194 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 251
Query: 322 DDNCFACVTQEEDSEGKVG-----VTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 376
DSEG + L+ +L D + NIT
Sbjct: 252 -----------PDSEGAIDGHLREAGLTFHLKGAVPDIVSKNIT---------------- 284
Query: 377 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYR 436
K L + I D+ F + H GG A+LD++E+ L L M +R L
Sbjct: 285 -----KALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSE 337
Query: 437 FGNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
+GN SS+ + + L K + G +T W + FG G
Sbjct: 338 YGNMSSACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 378
>pdb|1CGZ|A Chain A, Chalcone Synthase From Alfalfa Complexed With Resveratrol
pdb|1CGK|A Chain A, Chalcone Synthase From Alfalfa Complexed With Naringenin
Length = 389
Score = 52.4 bits (124), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 136/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + GC AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGCFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1Z1E|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea
pdb|1Z1F|A Chain A, Crystal Structure Of Stilbene Synthase From Arachis
Hypogaea (Resveratrol-Bound Form)
Length = 390
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 84/360 (23%), Positives = 145/360 (40%), Gaps = 55/360 (15%)
Query: 134 FTEENLQFQKKILERSGLGDS-TYLPEAVLNIPPN------PSMKEARKEAEAVMFGAID 186
T+ +FQ+ I ER+ + + YL E +L PN PS+ +AR++ +
Sbjct: 50 MTDLKKKFQR-ICERTQIKNRHMYLTEEILKENPNMCAYKAPSL-DAREDMMIREVPRVG 107
Query: 187 ELFAKTSVKP-----KDIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSA 241
+ A ++K I LI + P + +I L ++ Y + GC A
Sbjct: 108 KEAATKAIKEWGQPMSKITHLIFCTTSGVALPGVDYELIVLLGLDPSVKRYMMYHQGCFA 167
Query: 242 GLISIDLANNLLQVHPNSYALVISMEN--ITLNWYFGNDRSKLVSNCLFRMGGAAILL-S 298
G + LA +L + + ++ L++ EN +T D LV LF G AAI++ S
Sbjct: 168 GGTVLRLAKDLAENNKDARVLIVCSENTSVTFRGPSETDMDSLVGQALFADGAAAIIIGS 227
Query: 299 NRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTN 358
+ + + +V T + + +E VG+T N D + N
Sbjct: 228 DPVPEVENPLFEIVSTDQQLVPNSHGAIGGLLRE------VGLTFYLN--KSVPDIISQN 279
Query: 359 ITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEK 418
I + K + I Y F +A H GGRA+LD++E+
Sbjct: 280 INDA-----------------LSKAFDPLGISDYNSIFWIA------HPGGRAILDQVEE 316
Query: 419 NLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
+ L M+ +R L +GN SS+ +++ + K ++ G +T W + FG G
Sbjct: 317 KVNLKPEKMKATRDVLSNYGNMSSACVFFIMDLMRKKS-LEAGLKTTGEGLDWGVLFGFG 375
>pdb|3ALE|A Chain A, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|B Chain B, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|C Chain C, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
pdb|3ALE|D Chain D, A Type Iii Polyketide Synthase That Produces
Diarylheptanoid
Length = 416
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 60/298 (20%), Positives = 114/298 (38%), Gaps = 36/298 (12%)
Query: 198 DIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHP 257
DI L+V + P + ++ LR ++ L GC AG ++ LA +L +
Sbjct: 147 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 206
Query: 258 NSYALVISMENITLNWYFGNDRS---KLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 314
+ LV++ E +TL ++ G D L+ LF G AA+++ D R + +V
Sbjct: 207 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 265
Query: 315 VRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLL 374
+T D+ E +G +G + + + GD ++ + + L
Sbjct: 266 AQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLG 315
Query: 375 FFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTL 434
LF + +H G ++D+++ L L + SR L
Sbjct: 316 GDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 358
Query: 435 YRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-----QIAFGSGFKCNSAVWKALRSIN 487
+GN S +++ + L + + W +AFG G ++ + A +N
Sbjct: 359 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHATSHVN 416
>pdb|1I88|A Chain A, Chalcone Synthase (G256v)
pdb|1I88|B Chain B, Chalcone Synthase (G256v)
Length = 389
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 83/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG + V L + AG L +V
Sbjct: 248 -----------PDSEGAIDVHLRE-----AGLTFHL---------------LKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1CML|A Chain A, Chalcone Synthase From Alfalfa Complexed With Malonyl-Coa
pdb|1D6F|A Chain A, Chalcone Synthase C164a Mutant
Length = 389
Score = 48.9 bits (115), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGAFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3TSY|A Chain A, 4-Coumaroyl-Coa Ligase::stilbene Synthase Fusion Protein
Length = 979
Score = 48.5 bits (114), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 65/247 (26%), Positives = 101/247 (40%), Gaps = 47/247 (19%)
Query: 238 GCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFG---NDRSKLVSNCLFRMGGAA 294
GC AG + A +L + + + LV+ E IT+ + G + LV LF G AA
Sbjct: 750 GCYAGGTVLRTAKDLAENNAGARVLVVCSE-ITVVTFRGPSEDALDSLVGQALFGDGSAA 808
Query: 295 ILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGD 353
+++ S+ R ++LV +T A +E VG+T
Sbjct: 809 VIVGSDPDISIERPLFQLVSAAQTFIPNSAGAIAGNLRE------VGLTFH--------- 853
Query: 354 ALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPY-IPDFKLAFEHFCIHAGGRAV 412
L N+ TL +SE + +K P I D+ F + H GG A+
Sbjct: 854 -LWPNVPTL------ISENV--------EKCLTQAFDPLGISDWNSLF--WIAHPGGPAI 896
Query: 413 LDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRT-------W 465
LD +E L L +E +R L +GN SS+ + + L E + + KG+R W
Sbjct: 897 LDAVEAKLNLDKKKLEATRHVLSEYGNMSSACVLFIL--DEMRKKSLKGERATTGEGLDW 954
Query: 466 QIAFGSG 472
+ FG G
Sbjct: 955 GVLFGFG 961
>pdb|1CHW|A Chain A, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
pdb|1CHW|B Chain B, Chalcone Synthase From Alfalfa Complexed With Hexanoyl-Coa
Length = 389
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGSFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BQ6|A Chain A, Chalcone Synthase From Alfalfa With Coenzyme A
Length = 388
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 128
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 129 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 188
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 189 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 246
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 247 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 275
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 276 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 333
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 334 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1I89|A Chain A, Chalcone Synthase (G256l)
pdb|1I89|B Chain B, Chalcone Synthase (G256l)
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG + + L + AG L +V
Sbjct: 248 -----------PDSEGAIDLHLRE-----AGLTFHL---------------LKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1BI5|A Chain A, Chalcone Synthase From Alfalfa
Length = 389
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 135/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I86|A Chain A, Chalcone Synthase, G256a Mutant
Length = 389
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 80/341 (23%), Positives = 133/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG + L + + L +V
Sbjct: 248 -----------PDSEGAIDAHLREAGLTF--------------------HLLKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1I8B|A Chain A, Chalcone Synthase (g256f)
pdb|1I8B|B Chain B, Chalcone Synthase (g256f)
Length = 389
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 82/341 (24%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG + L + AG G +V
Sbjct: 248 -----------PDSEGAIDFHLRE-----AGLTFHLLKDVPG---------------IVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|1QLV|A Chain A, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1QLV|B Chain B, Pyrone Synthase (Pys) From Gerbera Hybrida
pdb|1EE0|A Chain A, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
pdb|1EE0|B Chain B, 2-Pyrone Synthase Complexed With Acetoacetyl-Coa
Length = 402
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 66/293 (22%), Positives = 115/293 (39%), Gaps = 45/293 (15%)
Query: 213 PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLN 272
P ++ L ++ Y L G +AG + LA +L + + S L++ E IT
Sbjct: 143 PGADYQLVKLLGLSPSVKRYMLYQQGXAAGGTVLRLAKDLAENNKGSRVLIVCSE-ITAI 201
Query: 273 WYFG---NDRSKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGADDNCFAC 328
+ G N LV+ LF G AA+++ S R + +V T +T +
Sbjct: 202 LFHGPNENHLDSLVAQALFGDGAAALIVGSGPHLAVERPIFEIVSTDQTILPDTEKAMKL 261
Query: 329 VTQEEDSEGKVGVTLSKNL-MAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKM 387
+E G + L +++ + VA + L PL
Sbjct: 262 HLRE----GGLTFQLHRDVPLMVAKNIENAAEKALSPL---------------------- 295
Query: 388 KIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWY 447
I D+ F + +H GGRA+LD++E+ L L + + SR L +GN S+ + +
Sbjct: 296 ----GITDWNSVF--WMVHPGGRAILDQVERKLNLKEDKLRASRHVLSEYGNLISACVLF 349
Query: 448 EL------AYSEAKGRIKKG-DRTWQIAFGSGFKCNSAVWKALRSINSAKEKN 493
+ + +E K +G D FG G + V +++R + N
Sbjct: 350 IIDEVRKRSMAEGKSTTGEGLDCGVLFGFGPGMTVETVVLRSVRVTAAVANGN 402
>pdb|3OIT|A Chain A, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
pdb|3OIT|B Chain B, Crystal Structure Of Curcuminoid Synthase Cus From Oryza
Sativa
Length = 387
Score = 47.0 bits (110), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 59/293 (20%), Positives = 112/293 (38%), Gaps = 36/293 (12%)
Query: 198 DIGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHP 257
DI L+V + P + ++ LR ++ L GC AG ++ LA +L +
Sbjct: 117 DITHLVVTTNSGAHVPGVDFRLVPLLGLRPSVRRTMLHLNGCFAGCAALRLAKDLAENSR 176
Query: 258 NSYALVISMENITLNWYFGNDRS---KLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHT 314
+ LV++ E +TL ++ G D L+ LF G AA+++ D R + +V
Sbjct: 177 GARVLVVAAE-LTLMYFTGPDEGCFRTLLVQGLFGDGAAAVIVGADADDVERPLFEIVSA 235
Query: 315 VRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLL 374
+T D+ E +G +G + + + GD ++ + + L
Sbjct: 236 AQTIIPESDHALNMRFTERRLDGVLG----RQVPGLIGDNVERCLLDM------FGPLLG 285
Query: 375 FFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTL 434
LF + +H G ++D+++ L L + SR L
Sbjct: 286 GDGGGGWNDLF-----------------WAVHPGSSTIMDQVDAALGLEPGKLAASRRVL 328
Query: 435 YRFGNTSSSSLWYELAYSEAKGRIKKGDRTW-----QIAFGSGFKCNSAVWKA 482
+GN S +++ + L + + W +AFG G ++ + A
Sbjct: 329 SDYGNMSGATVIFALDELRRQRKEAAAAGEWPELGVMMAFGPGMTVDAMLLHA 381
>pdb|2H84|A Chain A, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
pdb|2H84|B Chain B, Crystal Structure Of The C-terminal Type Iii Polyketide
Synthase (pks Iii) Domain Of 'steely1' (a Type I/iii Pks
Hybrid From Dictyostelium)
Length = 374
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 55/263 (20%), Positives = 110/263 (41%), Gaps = 32/263 (12%)
Query: 213 PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLN 272
P ++ +I+ L ++ +L MGC AGL S+ A +L + P + LV+ E +L+
Sbjct: 131 PDVNFKLIDLLGLNKDVERVSLNLMGCLAGLSSLRTAASLAKASPRNRILVVCTEVCSLH 190
Query: 273 WYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQE 332
+ + ++V++ +F G AA ++ Y ++ ++ +N ++
Sbjct: 191 FSNTDGGDQMVASSIFADGSAAYIIGCNPRIEETPLYEVMCSINRSFPNTENAMVWDLEK 250
Query: 333 EDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPY 392
E + L ++ V G ++ F TL+ K +
Sbjct: 251 E----GWNLGLDASIPIVIGSGIEA-----------------FVDTLLDKAKLQTSTAIS 289
Query: 393 IPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYS 452
D + F IH GG+++L +E +L + + + + +GN SS+S+ + + ++
Sbjct: 290 AKDCE-----FLIHTGGKSILMNIENSLGIDPKQTKNTWDVYHAYGNMSSASVIFVMDHA 344
Query: 453 EAKGRIKKGDRTWQI--AFGSGF 473
R K T+ I AFG G
Sbjct: 345 ----RKSKSLPTYSISLAFGPGL 363
>pdb|1D6H|A Chain A, Chalone Synthase (N336a Mutant Complexed With Coa)
Length = 387
Score = 45.4 bits (106), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 69 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 127
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 128 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 187
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 188 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 245
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 246 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 274
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 275 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 332
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
G SS+ + + L K + G +T W + FG G
Sbjct: 333 GAMSSACVLFILDEMRKK-STQNGLKTTGEGLEWGVLFGFG 372
>pdb|1D6I|A Chain A, Chalcone Synthase (H303q Mutant)
pdb|1D6I|B Chain B, Chalcone Synthase (H303q Mutant)
Length = 388
Score = 45.4 bits (106), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 70 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 128
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 129 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 188
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV LF G AA+++ S+ + + + +V T +T
Sbjct: 189 CSEVTAVTFRGPSDTHLDSLVGQALFGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 246
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 247 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 275
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + GG A+LD++E+ L L M +R L +
Sbjct: 276 KNITKALVEAFEPLGISDYNSIF--WIAQPGGPAILDQVEQKLALKPEKMNATREVLSEY 333
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 334 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 373
>pdb|1JWX|A Chain A, Chalcone Synthase--F215s Mutant
Length = 389
Score = 45.1 bits (105), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 81/341 (23%), Positives = 134/341 (39%), Gaps = 61/341 (17%)
Query: 156 YLPEAVLNIPPN------PSMKEARKEAEAVMFGAIDELFAKTSVK----PKD-IGILIV 204
YL E +L PN PS+ +AR++ V + + A ++K PK I LIV
Sbjct: 71 YLTEEILKENPNVCEYMAPSL-DARQDMVVVEVPRLGKEAAVKAIKEWGQPKSKITHLIV 129
Query: 205 NCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNSYALVI 264
+ P + LR + Y + G AG + LA +L + + + LV+
Sbjct: 130 CTTSGVDMPGADYQLTKLLGLRPYVKRYMMYQQGXFAGGTVLRLAKDLAENNKGARVLVV 189
Query: 265 SMENITLNWYFGNDR--SKLVSNCLFRMGGAAILL-SNRFSDRRRSKYRLVHTVRTHKGA 321
E + + +D LV L G AA+++ S+ + + + +V T +T
Sbjct: 190 CSEVTAVTFRGPSDTHLDSLVGQALSGDGAAALIVGSDPVPEIEKPIFEMVWTAQTIA-- 247
Query: 322 DDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFFATLVG 381
DSEG A+ G + +T L +V
Sbjct: 248 -----------PDSEG-----------AIDGHLREAGLTF---------HLLKDVPGIVS 276
Query: 382 KKLFKMKIKPYIP----DFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRF 437
K + K ++ + P D+ F + H GG A+LD++E+ L L M +R L +
Sbjct: 277 KNITKALVEAFEPLGISDYNSIF--WIAHPGGPAILDQVEQKLALKPEKMNATREVLSEY 334
Query: 438 GNTSSSSLWYELAYSEAKGRIKKGDRT------WQIAFGSG 472
GN SS+ + + L K + G +T W + FG G
Sbjct: 335 GNMSSACVLFILDEMRKKS-TQNGLKTTGEGLEWGVLFGFG 374
>pdb|3AWJ|A Chain A, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWJ|B Chain B, Crystal Structure Of The Huperzia Serrata Polyketide
Synthase 1 Complexed With Coa-Sh
pdb|3AWK|A Chain A, Crystal Structure Of The Polyketide Synthase 1 From
Huperzia Serrata
Length = 402
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 39/120 (32%), Positives = 58/120 (48%), Gaps = 16/120 (13%)
Query: 379 LVGKKLFKMKIKP----YIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTL 434
L+ K + K+ +P + P + F + +H GG A+LD++E L LS M+ SR L
Sbjct: 287 LISKNIDKVLAEPLEYVHFPSYNDMF--WAVHPGGPAILDQIEAKLGLSTDKMQASRDVL 344
Query: 435 YRFGNTSSSSLWYELAY----SEAKGRIKKGDR-TWQ--IAFGSGFKCNSAVWKALRSIN 487
+GN SS+S+ + L SE G+ W I FG G + + LRSIN
Sbjct: 345 ASYGNMSSASVLFVLDQIRKNSEELHLPTTGEGFEWGFVIGFGPGLTVETLL---LRSIN 401
>pdb|2D51|A Chain A, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D51|B Chain B, Pentaketide Chromone Synthase (M207g Mutant)
pdb|2D52|A Chain A, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
pdb|2D52|B Chain B, Pentaketide Chromone Synthase (M207g Mutant Complexed With
Coa)
Length = 406
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 406 HAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRIKKG 461
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 462 DR-TWQIAFGSG 472
+ W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|2D3M|A Chain A, Pentaketide Chromone Synthase Complexed With Coenzyme A
pdb|2D3M|B Chain B, Pentaketide Chromone Synthase Complexed With Coenzyme A
Length = 406
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 26/72 (36%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 406 HAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRIKKG 461
H GGRA+LD++E L+L +R L+ +GN S+S+ Y L S AKG G
Sbjct: 319 HPGGRAILDQVEAKLKLRPEKFRAARTVLWDYGNMVSASVGYILDEMRRKSAAKGLETYG 378
Query: 462 DR-TWQIAFGSG 472
+ W + G G
Sbjct: 379 EGLEWGVLLGFG 390
>pdb|2EBD|A Chain A, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
pdb|2EBD|B Chain B, Crystal Structure Of 3-oxoacyl-[acyl-carrier-protein]
Synthase Iii From Aquifex Aeolicus Vf5
Length = 309
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 69/356 (19%), Positives = 134/356 (37%), Gaps = 94/356 (26%)
Query: 151 LGDSTYLPEAVLN--------------IPPNPSMKEARKEAEAVMF----GAIDELFAKT 192
+G YLP+ VL I +KE R E + A E +
Sbjct: 6 IGTGVYLPKNVLTNFDLEKIVDTSDEWITTRTGIKERRIAKEETITYMATQAAKEALREA 65
Query: 193 SVKPKDIGILIVNCSLFNPT---PSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLA 249
++ P+++ ++I+ + P PS + +V K +G + ++++ CS + ++D+A
Sbjct: 66 NLSPEELDLIIL--ATLTPQKRFPSTACLVQAQLKAKG-VYAFDISA-ACSGFIYALDIA 121
Query: 250 NNLLQVHPNSYALVISMENIT--LNWYFGNDRSKLVSNCLFRMGGAAILLSNRFSDRRRS 307
++ ++ LVI E ++ ++W DRS V LF G A++
Sbjct: 122 DSFIKSGKAKNVLVIGAEKLSEAVDW---EDRSTCV---LFGDGAGAVV----------- 164
Query: 308 KYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVL 367
VT+ ED D L T + G L
Sbjct: 165 ---------------------VTRSEDK----------------SDILATRMYAEGSLEE 187
Query: 368 PMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCI----------HAGGRAVLDELE 417
+ + + G++LFK+ ++ + E + H +++ L
Sbjct: 188 LLHADNCGYIRMKGRELFKVAVRSMEEVCREVLEKAGVKPEEVSLVIPHQANVRIINALA 247
Query: 418 KNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGF 473
+ L + E + + ++GNTS++S+ L + +G++K+GD A G G
Sbjct: 248 EKLNIPK---EKVFVNIQKYGNTSAASIPIALHEAIKEGKVKRGDLILMTAMGGGL 300
>pdb|2P0U|A Chain A, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
pdb|2P0U|B Chain B, Crystal Structure Of Marchantia Polymorpha
Stilbenecarboxylate Synthase 2 (Stcs2)
Length = 413
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/88 (29%), Positives = 43/88 (48%), Gaps = 7/88 (7%)
Query: 403 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWY------ELAYSEAKG 456
+ +H GG A+LD++E L+L + SR L +GN SS+S+ + E + K
Sbjct: 318 WAVHPGGPAILDQVEAKLELEKGKFQASRDILSDYGNMSSASVLFVLDRVRERSLESNKS 377
Query: 457 RIKKGDR-TWQIAFGSGFKCNSAVWKAL 483
+G + I FG G + + +AL
Sbjct: 378 TFGEGSEWGFLIGFGPGLTVETLLLRAL 405
>pdb|3IL9|A Chain A, Structure Of E. Coli Fabh
pdb|3IL9|B Chain B, Structure Of E. Coli Fabh
Length = 340
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 378 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 427
T+ G ++FK+ + +I D LA + H ++ K L +S M
Sbjct: 229 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 285
Query: 428 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 286 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 339
>pdb|1MZS|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii With
Bound Dichlorobenzyloxy-Indole-Carboxylic Acid Inhibitor
Length = 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 378 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 427
T+ G ++FK+ + +I D LA + H ++ K L +S M
Sbjct: 206 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 262
Query: 428 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1HN9|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HN9|B Chain B, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii
pdb|1HND|A Chain A, Crystal Structure Of Beta-ketoacyl-acp Synthase Iii-coa
Complex
pdb|1HNJ|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Malonyl-Coa
pdb|1HNK|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii, Apo
Tetragonal Form
pdb|2EFT|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2EFT|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A (High
Concentration (1.7mm) Soak)
pdb|2GYO|A Chain A, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
pdb|2GYO|B Chain B, Methanethiol-Cys 112 Inhibition Complex Of E. Coli
Ketoacyl Synthase Iii (Fabh) And Coenzyme A
Length = 317
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/114 (29%), Positives = 52/114 (45%), Gaps = 13/114 (11%)
Query: 378 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 427
T+ G ++FK+ + +I D LA + H ++ K L +S M
Sbjct: 206 TMAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGMS---M 262
Query: 428 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1UB7|A Chain A, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|B Chain B, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|C Chain C, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus.
pdb|1UB7|D Chain D, The Crystal Analysis Of Beta-Keroacyl-[acyl Carrier
Protein] Synthase Iii (Fabh)from Thermus Thermophilus
Length = 322
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 35/128 (27%), Positives = 62/128 (48%), Gaps = 11/128 (8%)
Query: 352 GDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRA 411
G ++K + G V + +++ ATL + + K + P D +L F H
Sbjct: 200 GTSMKNRLYMNGREVFKFAVRVMNTATL--EAIEKAGLTP--EDIRL----FVPHQANLR 251
Query: 412 VLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGS 471
++D + L L W E + + R+GNTS++S+ L + GRI++GD ++FG+
Sbjct: 252 IIDAARERLGLP-W--ERVAVNVDRYGNTSTASIPLALKEAVDAGRIREGDHVLLVSFGA 308
Query: 472 GFKCNSAV 479
G +AV
Sbjct: 309 GLTWAAAV 316
>pdb|3OV3|A Chain A, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|B Chain B, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|C Chain C, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
pdb|3OV3|D Chain D, G211f Mutant Of Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 403 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRI 458
+ H G A++D +E LQLS + +R +GN S+++++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 459 KKGDR-TWQI--AFGSGFKCNSAVWKAL 483
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3OV2|A Chain A, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|B Chain B, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|C Chain C, Curcumin Synthase 1 From Curcuma Longa
pdb|3OV2|D Chain D, Curcumin Synthase 1 From Curcuma Longa
Length = 393
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/88 (26%), Positives = 42/88 (47%), Gaps = 7/88 (7%)
Query: 403 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYEL----AYSEAKGRI 458
+ H G A++D +E LQLS + +R +GN S+++++ + S +GR
Sbjct: 300 WVAHPGNWAIIDAIEAKLQLSPDKLSTARHVFTEYGNMQSATVYFVMDELRKRSAVEGRS 359
Query: 459 KKGDR-TWQI--AFGSGFKCNSAVWKAL 483
GD W + FG G + V +++
Sbjct: 360 TTGDGLQWGVLLGFGPGLSIETVVLRSM 387
>pdb|3S21|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal)
pdb|3S23|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Co- Crystal) Xe Derivative
Length = 345
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 49/305 (16%)
Query: 190 AKTSVKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIISYNLGGMGCSAGL 243
A+ ++ +IGI L++N S+ PS +++V + + + +++++ C A +
Sbjct: 76 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 134
Query: 244 ISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLFRMGGAAILLSNRF 301
+D+A +L+ YALV+ E L + +R S V+ FR AA+ L
Sbjct: 135 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 194
Query: 302 SDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITT 361
+ ++ LV +KG GVT S A + N
Sbjct: 195 AAMVMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 226
Query: 362 LGPL--VLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 419
G L ++ + LL + +K F + K + + F IH R K+
Sbjct: 227 RGNLDRMVTDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKS 285
Query: 420 LQLSDWHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNS 477
+ ++P++ MT++ GN +S+ L+ + GR+KKGDR + GSG C+
Sbjct: 286 -----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSM 340
Query: 478 A--VW 480
A VW
Sbjct: 341 AEVVW 345
>pdb|3ROW|A Chain A, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3ROW|B Chain B, Crystal Structure Of Xanthomonas Campestri Olea
pdb|3S1Z|A Chain A, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S1Z|B Chain B, Crystal Structure Of Acetamide Bound Xanthomonas Campestri
Olea
pdb|3S20|A Chain A, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
pdb|3S20|B Chain B, Crystal Structure Of Cerulenin Bound Xanthomonas Campestri
Olea (Soak)
Length = 344
Score = 37.7 bits (86), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 72/305 (23%), Positives = 128/305 (41%), Gaps = 49/305 (16%)
Query: 190 AKTSVKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIISYNLGGMGCSAGL 243
A+ ++ +IGI L++N S+ PS +++V + + + +++++ C A +
Sbjct: 75 ARKALIDANIGIEKIGLLINTSVSRDYLEPSTASIVSGNLGVSDHCMTFDVAN-ACLAFI 133
Query: 244 ISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLFRMGGAAILLSNRF 301
+D+A +L+ YALV+ E L + +R S V+ FR AA+ L
Sbjct: 134 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 193
Query: 302 SDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITT 361
+ ++ LV +KG GVT S A + N
Sbjct: 194 AAMVMARSELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 225
Query: 362 LGPL--VLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKN 419
G L ++ + LL + +K F + K + + F IH R K+
Sbjct: 226 RGNLDRMVTDTRLLLIEGIKLAQKTF-VAAKQVLGWAVEELDQFVIHQVSRPHTAAFVKS 284
Query: 420 LQLSDWHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNS 477
+ ++P++ MT++ GN +S+ L+ + GR+KKGDR + GSG C+
Sbjct: 285 -----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNCSM 339
Query: 478 A--VW 480
A VW
Sbjct: 340 AEVVW 344
>pdb|3GWA|A Chain A, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWA|B Chain B, 1.6 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|A Chain A, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
pdb|3GWE|B Chain B, 2.1 Angstrom Crystal Structure Of
3-Oxoacyl-(Acyl-Carrier-Protein) Synthase Iii
Length = 365
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 403 FCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGD 462
F +H R +LD L K +++ + H P M GNT SS+L L A G + +G
Sbjct: 289 FVLHQANRFMLDALRKKMKIPE-HKFPVLME--HCGNTVSSTLPLALETMRANGTLARGM 345
Query: 463 RTWQIAFGSGF 473
R + FG G+
Sbjct: 346 RLMLLGFGVGY 356
>pdb|3IL3|A Chain A, Structure Of Haemophilus Influenzae Fabh
Length = 323
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 69/310 (22%), Positives = 119/310 (38%), Gaps = 45/310 (14%)
Query: 173 ARKEAEAVM-FGAIDELFAKTSVKPKDIGILIV-NCSLFNPTPSLSAMVINHYKLRGNII 230
A E A M F A + P+DI ++IV S + PS + V + + I
Sbjct: 53 AEDETVATMGFEAAKNAIEAAQINPQDIELIIVATTSHSHAYPSAACQVQGLLNI-DDAI 111
Query: 231 SYNLGGMGCSAGLI-SIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFR 289
S++L G + ++ +A+ ++ ALVI ++ DRS +V LF
Sbjct: 112 SFDLAA--AXTGFVYALSVADQFIRAGKVKKALVIG-SDLNSRKLDETDRSTVV---LFG 165
Query: 290 MGGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMA 349
G A++L S+ + + H AD N + Q E G+ S +
Sbjct: 166 DGAGAVIL-------EASEQEGIISTHLHASADKNNALVLAQPER-----GIEKSGYIEM 213
Query: 350 VAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGG 409
+ K + L +V TL+ L K + +P H
Sbjct: 214 QGNETFKLAVRELSNVVEE---------TLLANNLDKKDLDWLVP-----------HQAN 253
Query: 410 RAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAF 469
++ K L++ M +TL ++ N S++++ L + GRI++G AF
Sbjct: 254 LRIITATAKKLEMD---MSQVVVTLDKYANNSAATVPVALDEAIRDGRIQRGQLLLLEAF 310
Query: 470 GSGFKCNSAV 479
G G+ SA+
Sbjct: 311 GGGWTWGSAL 320
>pdb|3A5S|A Chain A, Benzalacetone Synthase (I207lL208F)
pdb|3A5S|B Chain B, Benzalacetone Synthase (I207lL208F)
Length = 387
Score = 37.0 bits (84), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 60/294 (20%), Positives = 113/294 (38%), Gaps = 54/294 (18%)
Query: 195 KPKD-IGILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLL 253
+PK I LIV C P + L ++ + +GC AG + LA ++
Sbjct: 115 QPKSKITHLIVCCLAGVDMPGADYQLTKLLDLDPSVKRFMFYHLGCYAGGTVLRLAKDIA 174
Query: 254 QVHPNSYALVISMENITLNWYFGNDRSKL---VSNCLFRMGGAAILL-SNRFSDRRRSKY 309
+ + + L++ E +T + G + L + LF G AA+++ ++ R +
Sbjct: 175 ENNKGARVLIVCSE-MTTTCFRGPSETHLDSMIGQALFGDGAAAVIVGADPDLTVERPIF 233
Query: 310 RLVHTVRT-----HKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNIT-TLG 363
LV T +T H + + E + L K + + + +KT ++
Sbjct: 234 ELVSTAQTIVPESHGAIEGHLL---------ESGLSFHLYKTVPTLISNNIKTCLSDAFT 284
Query: 364 PLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLS 423
PL + L + A H GG A+LD++ + L
Sbjct: 285 PLNISDWNSLFWIA----------------------------HPGGPAILDQVTAKVGLE 316
Query: 424 DWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK----GRIKKGDR-TWQIAFGSG 472
++ +R L +GN SS+++++ + K G+ G+ W + FG G
Sbjct: 317 KEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTGEGLEWGVLFGFG 370
>pdb|3FK5|A Chain A, Crystal Structure Of 3-Oxoacyl-(Acyl Carrier Protein)
Synthase Iii, Fabh (Xoo4209) From Xanthomonas Oryzae Pv.
Oryzae Kacc10331
Length = 338
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 73/307 (23%), Positives = 128/307 (41%), Gaps = 53/307 (17%)
Query: 190 AKTSVKPKDIGI----LIVNCSLFNP--TPSLSAMVINHYKLRGNIISYNLGGMGCSAGL 243
A+ ++ IGI L+VN S+ PS +++V + + + +++++ C A +
Sbjct: 69 ARKALIDAGIGIEKIGLLVNTSVSRDYLEPSTASIVSGNLGVGDHCVTFDVAN-ACLAFI 127
Query: 244 ISIDLANNLLQVHPNSYALVISMENITLNWYFGNDR--SKLVSNCLFRMGGAAILLSNRF 301
+D+A +L+ YALV+ E L + +R S V+ FR AA+ L
Sbjct: 128 NGMDIAARMLERGEIDYALVVDGETANLVYEKTLERMTSPDVTEEEFRNELAALTLGCGA 187
Query: 302 SDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITT 361
+ ++ LV +KG GVT S A + N
Sbjct: 188 AAMVMARTELVPDAPRYKG-------------------GVTRS---------ATEWNKLC 219
Query: 362 LGPL--VLPMSEQLLFFATLVGKKLF--KMKIKPYIPDFKLAFEHFCIHAGGRAVLDELE 417
G L ++ + LL + +K F ++ + D + F IH R
Sbjct: 220 RGNLDRMVTDTRLLLIEGIKLAQKTFLAARQVLGWAVD---ELDQFVIHQVSRPHTAAFV 276
Query: 418 KNLQLSDWHMEPSR-MTLY-RFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKC 475
K+ + ++P++ MT++ GN +S+ L+ + GR+KKGDR + GSG C
Sbjct: 277 KS-----FGIDPAKVMTIFGEHGNIGPASVPIVLSKLKELGRLKKGDRIALLGIGSGLNC 331
Query: 476 NSA--VW 480
+ A VW
Sbjct: 332 SMAEVVW 338
>pdb|1EBL|A Chain A, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
pdb|1EBL|B Chain B, The 1.8 A Crystal Structure And Active Site Architecture
Of Beta-Ketoacyl-[acyl Carrier Protein] Synthase Iii
(Fabh) From Escherichia Coli
Length = 317
Score = 36.2 bits (82), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 378 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 427
T G ++FK+ + +I D LA + H ++ K L S
Sbjct: 206 TXAGNEVFKVAVTELAHIVDETLAANNNDRSQLDWLVPHQANLRIISATAKKLGXS---X 262
Query: 428 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|1HNH|A Chain A, Crystal Structure Of Beta-Ketoacyl-Acp Synthase Iii +
Degraded Form Of Acetyl-Coa
Length = 317
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 33/114 (28%), Positives = 49/114 (42%), Gaps = 13/114 (11%)
Query: 378 TLVGKKLFKMKIK--PYIPDFKLA--------FEHFCIHAGGRAVLDELEKNLQLSDWHM 427
T G ++FK+ + +I D LA + H ++ K L S
Sbjct: 206 TXAGNEVFKVAVTELAHIVDETLAANNLDRSQLDWLVPHQANLRIISATAKKLGXS---X 262
Query: 428 EPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ +TL R GNTS++S+ L + GRIK G AFG GF SA+ +
Sbjct: 263 DNVVVTLDRHGNTSAASVPCALDEAVRDGRIKPGQLVLLEAFGGGFTWGSALVR 316
>pdb|3A5Q|A Chain A, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5Q|B Chain B, Benzalacetone Synthase From Rheum Palmatum
pdb|3A5R|A Chain A, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
pdb|3A5R|B Chain B, Benzalacetone Synthase From Rheum Palmatum Complexed With
4-Coumaroyl- Primed Monoketide Intermediate
Length = 387
Score = 35.8 bits (81), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 37/72 (51%), Gaps = 5/72 (6%)
Query: 406 HAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK----GRIKKG 461
H GG A+LD++ + L ++ +R L +GN SS+++++ + K G+ G
Sbjct: 299 HPGGPAILDQVTAKVGLEKEKLKVTRQVLKDYGNMSSATVFFIMDEMRKKSLENGQATTG 358
Query: 462 DR-TWQIAFGSG 472
+ W + FG G
Sbjct: 359 EGLEWGVLFGFG 370
>pdb|1MZJ|A Chain A, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
pdb|1MZJ|B Chain B, Crystal Structure Of The Priming Beta-Ketosynthase From
The R1128 Polyketide Biosynthetic Pathway
Length = 339
Score = 35.0 bits (79), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 25/102 (24%), Positives = 43/102 (42%), Gaps = 8/102 (7%)
Query: 381 GKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHME----PSRMTLYR 436
GK++F+ + +P + A E + G + NL++ D ++ P + + R
Sbjct: 222 GKRVFRWAVADVVPAAREALEVAGLTVGDLVAFVPHQANLRIIDVLVDRLGVPEHVVVSR 281
Query: 437 ----FGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFK 474
GNTSS+S+ L G + G I FG+G
Sbjct: 282 DAEDTGNTSSASVALALDRLVRSGAVPGGGPALMIGFGAGLS 323
>pdb|1M1M|A Chain A, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
pdb|1M1M|B Chain B, X-Ray Crystal Structure Of Mycobacterium Tuberculosis
Beta- Ketoacyl-Acyl Carrier Protein Synthase Iii
(Mtfabh)
Length = 355
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 47/288 (16%)
Query: 200 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 259
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 105 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 162
Query: 260 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 316
LV+ E + T++ Y DR NC +F G AA+++ + ++ +
Sbjct: 163 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVGE-------TPFQGIGP-- 206
Query: 317 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 376
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 207 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 253
Query: 377 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 433
VG++ M PD + F H + + L KNLQL P +
Sbjct: 254 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 303
Query: 434 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 304 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 351
>pdb|1HZP|A Chain A, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|1HZP|B Chain B, Crystal Structure Of The Myobacterium Tuberculosis
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii
pdb|2QX1|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QX1|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-Ketoacyl-Acyl Carrier Protein Synthase
Iii (Fabh) And Decyl-Coa Disulfide
pdb|2QNX|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNX|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta- Ketoacyl-acyl Carrier Protein Synthase Iii (fabh)
And 11- [(decyloxycarbonyl)dithio]-undecanoic Acid
pdb|2QNZ|A Chain A, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QNZ|B Chain B, Crystal Structure Of The Complex Between The Mycobacterium
Beta-Ketoacyl-Acyl Carrier Protein Synthase Iii (Fabh)
And Ss-(2-Hydroxyethyl)-O-Decyl Ester
Carbono(Dithioperoxoic) Acid
pdb|2QO1|A Chain A, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh.
pdb|2QO1|B Chain B, 2.6 Angstrom Crystal Structure Of The Complex Between 11-
(Decyldithiocarbonyloxy)-Undecanoic Acid And
Mycobacterium Tuberculosis Fabh
Length = 335
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 64/288 (22%), Positives = 117/288 (40%), Gaps = 47/288 (16%)
Query: 200 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 259
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 85 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 142
Query: 260 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 316
LV+ E + T++ Y DR NC +F G AA+++ + ++ +
Sbjct: 143 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVG-------ETPFQGIGP-- 186
Query: 317 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 376
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 187 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 233
Query: 377 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 433
VG++ M PD + F H + + L KNLQL P +
Sbjct: 234 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 283
Query: 434 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 284 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|3V7I|A Chain A, Germicidin Synthase (Gcs) From Streptomyces Coelicolor, A
Type Iii Polyketide Synthase
Length = 413
Score = 32.3 bits (72), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 41/172 (23%), Positives = 74/172 (43%), Gaps = 11/172 (6%)
Query: 138 NLQFQKKILERSGLG--DSTYLPEAVLNIPPNPSMKEARKEA-EAVMFGAIDELFAKTSV 194
+L ++ L R G D+ A+ +P + +++E A EAV A E A+ ++
Sbjct: 92 DLGAAREALVRDGFTEQDANRAIAALKAVPASQTVQERTAPAWEAVQ--AYGERAARGAL 149
Query: 195 KPKDIGILIVNC-----SLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLA 249
+ + + V+C S P L + N LRG+ + C AG S+ LA
Sbjct: 150 QIAGLDVADVDCLITSNSTTPALPGLDVALANRLPLRGDTMLLPATQWACVAGTRSLALA 209
Query: 250 NNLLQVHPNSYALVISMENITLNWYFGNDR-SKLVSNCLFRMGGAAILLSNR 300
+L+ P+ LV+ E ++ + +D L+ LF A +++ R
Sbjct: 210 ADLVAADPDRVVLVVISEALSTTYQPADDTLESLIVRLLFADTAVAAVVTGR 261
>pdb|3H76|A Chain A, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
pdb|3H76|B Chain B, Crystal Structure Of Pqsd, A Key Enzyme In Pseudomonas
Aeruginosa Quinolone Signal Biosynthesis Pathway
Length = 359
Score = 32.0 bits (71), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 69/318 (21%), Positives = 128/318 (40%), Gaps = 32/318 (10%)
Query: 172 EARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNC-SLFNPTPSLSAMVINHYKLRGNII 230
E + A+M A + + P+DI +L+VN S + PS + ++ LR +I
Sbjct: 69 EPEQAVSALMVPAARQAIEAAGLLPEDIDLLLVNTLSPDHHDPSQACLIQPLLGLR-HIP 127
Query: 231 SYNLGGMGCSAGLISIDLANNLLQVHPNSYALVISMENITLNWYFGNDRSKLVSNCLFRM 290
++ CS L + +A + + LV+ E ++ +DR + +S L
Sbjct: 128 VLDIRAQ-CSGLLYGLQMARGQILAGLARHVLVVCGEVLSKRMDC-SDRGRNLSILLGDG 185
Query: 291 GGAAILLSNRFSDRRRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVT-LSKNLMA 349
GA ++ + + RL GAD N F + + G T L +N++
Sbjct: 186 AGAVVVSAGESLEDGLLDLRL--------GADGNYFDLLMTA--APGSASPTFLDENVLR 235
Query: 350 VAGDALKTNITTLGPLVLPMSEQLLFFATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGG 409
G + P+ S+ L+ A G+ L ++ + D +H H
Sbjct: 236 EGGGEF---LMRGRPMFEHASQTLVRIA---GEMLAAHELT--LDDI----DHVICHQPN 283
Query: 410 RAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAF 469
+LD +++ L + +T+ R GN +S+S LA I+ G R + +
Sbjct: 284 LRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQPGQRVLVLTY 338
Query: 470 GSGFKCNSAVWKALRSIN 487
GSG +A+++ +N
Sbjct: 339 GSGATWGAALYRKPEEVN 356
>pdb|2AJ9|A Chain A, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
pdb|2AJ9|B Chain B, X-Ray Crystal Structure Of W42a,R161a Double Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acp Synthase
Iii
Length = 356
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 200 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 259
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 106 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 163
Query: 260 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 316
LV+ E + T++ Y NC +F G AA+++ + ++ +
Sbjct: 164 TMLVVGTEKLSPTIDMYD-------AGNCFIFADGAAAVVVG-------ETPFQGIGP-- 207
Query: 317 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 376
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 208 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 254
Query: 377 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 433
VG++ M PD + F H + + L KNLQL P +
Sbjct: 255 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 304
Query: 434 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 305 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2AHB|A Chain A, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
pdb|2AHB|B Chain B, X-Ray Crystal Structure Of R46a,R161a Mutant Of
Mycobacterium Tuberculosis Fabh
Length = 356
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 62/288 (21%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 200 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 259
G+++ + F TP + MV +G I+ ++L GC+ ++ A ++++ +
Sbjct: 106 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLS-AGCAGFGYALGAAADMIRGGGAA 163
Query: 260 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 316
LV+ E + T++ Y NC +F G AA+++ + ++ +
Sbjct: 164 TMLVVGTEKLSPTIDMYD-------AGNCFIFADGAAAVVVG-------ETPFQGIGP-- 207
Query: 317 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 376
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 208 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 254
Query: 377 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 433
VG++ M PD + F H + + L KNLQL P +
Sbjct: 255 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 304
Query: 434 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 305 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 352
>pdb|2W1V|A Chain A, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
pdb|2W1V|B Chain B, Crystal Structure Of Mouse Nitrilase-2 At 1.4a Resolution
Length = 276
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 13/74 (17%)
Query: 154 STYLPEAVLNIPPNPSMK--EARKEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNP 211
+TY P+ IP + K E KE+ + G S+ +D G L CS+F P
Sbjct: 51 TTYFPDYAEKIPGESTQKLSEVAKESSIYLIGG--------SIPEEDAGKLYNTCSVFGP 102
Query: 212 TPSLSAMVINHYKL 225
SL ++ H K+
Sbjct: 103 DGSL---LVKHRKI 113
>pdb|4DFE|A Chain A, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|B Chain B, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|C Chain C, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
pdb|4DFE|D Chain D, Crystal Structure Of 3-Oxoacyl-[acyl-Carrier-Protein]
Synthase Iii From Burkholderia Xenovorans
Length = 333
Score = 31.2 bits (69), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 16/50 (32%), Positives = 26/50 (52%)
Query: 432 MTLYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+T+ GNTS++S+ L + GRIK+G G GF ++V +
Sbjct: 283 VTVGEHGNTSAASIPLALDVAVRDGRIKRGQNVLIEGVGGGFTWGASVIR 332
>pdb|3E1H|A Chain A, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
pdb|3E1H|B Chain B, Crystal Structure Of A Type Iii Polyketide Synthase
Pksiiinc From Neurospora Crassa
Length = 465
Score = 30.4 bits (67), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 82/383 (21%), Positives = 144/383 (37%), Gaps = 69/383 (18%)
Query: 145 ILERSGLGDSTYLPEAVLNIPPNPSMKEARK----EAEAVMFGAIDELFAKTSVKPKDIG 200
I +RS +G+ + ++N P P++KE + + + A + A+ + P I
Sbjct: 77 IDQRSSIGNPDH---PLVNKPNPPTVKELHEVFMSDGVPLAVEASRKAMAEARLVPAQIT 133
Query: 201 ILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPN-- 258
++ + P V L + L G+GCS GL ++ A NL H
Sbjct: 134 HMVSTTCTDSANPGYDHYVAKELGLSDRLEKVLLHGIGCSGGLAALRTAANLCLGHTARG 193
Query: 259 --SYALVISMENITLNWYFGNDRSKL----------VSNCLFRMGGAAILLSNRFSDR-- 304
+ LV+++E T RS+L + LF +A++LSN +
Sbjct: 194 KPARILVLALEVSTTMV-----RSELESIDALQETRIGIALFSDCASAVILSNGIGEAPG 248
Query: 305 RRSKYRLVHTVRTHKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGP 364
+ + Y L+ G ++ DSE +G + K ++ P
Sbjct: 249 KPAIYDLL-------GWENRVIP------DSEHDLGFDVDPM-------GWKVVLSPRVP 288
Query: 365 LVLPMSEQLLFFATL--VGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQL 422
++ S Q + L + +L KP DF + +H GG +L E + L
Sbjct: 289 VLAKASLQPTYADLLSSLQDQLPSSYQKPA--DFD-----WAMHPGGATILSGAESAMGL 341
Query: 423 SDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAK--------GRIKKGDRTWQIAFGSGFK 474
+ HM S GN+SS++++ L K G++K + AFG G
Sbjct: 342 TPEHMRASYDRYINHGNSSSATIFSVLNRLREKDMDALAPGGKVK--EYVVGCAFGPGIN 399
Query: 475 CNSAVWKALRSINSAKEKNPWMD 497
+ K R +N+ +D
Sbjct: 400 VEMCMLK--RRMNAPARTTTGLD 420
>pdb|1U6S|A Chain A, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6S|B Chain B, Crystal Structure Of The Complex Between Mycobacterium
Tuberculosis Beta-ketoacyl-acyl Carrier Protein Synthase
Iii And Lauroyl Coenzyme A
pdb|1U6E|A Chain A, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
pdb|1U6E|B Chain B, 1.85 Angstrom Crystal Structure Of The C112a Mutant Of
Mycobacterium Tuberculosis Beta-Ketoacyl-Acyl Carrier
Protein Synthase Iii (Fabh)
Length = 335
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 63/288 (21%), Positives = 115/288 (39%), Gaps = 47/288 (16%)
Query: 200 GILIVNCSLFNPTPSLSAMVINHYKLRGNIISYNLGGMGCSAGLISIDLANNLLQVHPNS 259
G+++ + F TP + MV +G I+ ++L G ++ A ++++ +
Sbjct: 85 GVIVTTNTHFLQTPPAAPMVAASLGAKG-ILGFDLSAGAAGFGY-ALGAAADMIRGGGAA 142
Query: 260 YALVISMENI--TLNWYFGNDRSKLVSNC-LFRMGGAAILLSNRFSDRRRSKYRLVHTVR 316
LV+ E + T++ Y DR NC +F G AA+++ + ++ +
Sbjct: 143 TMLVVGTEKLSPTIDMY---DRG----NCFIFADGAAAVVVGE-------TPFQGIGP-- 186
Query: 317 THKGADDNCFACVTQEEDSEGKVGVTLSKNLMAVAGDALKTNITTLGPLVLPMSEQLLFF 376
T G+D + Q+ D +T ++N + + GP V + F
Sbjct: 187 TVAGSDGEQADAIRQDIDW-----ITFAQNP-----SGPRPFVRLEGPAVFRWAA---FK 233
Query: 377 ATLVGKKLFKMKIKPYIPDFKLAFEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMT--- 433
VG++ M PD + F H + + L KNLQL P +
Sbjct: 234 MGDVGRR--AMDAAGVRPD---QIDVFVPHQANSRINELLVKNLQL-----RPDAVVAND 283
Query: 434 LYRFGNTSSSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCNSAVWK 481
+ GNTS++S+ +A G K GD I +G+G + V +
Sbjct: 284 IEHTGNTSAASIPLAMAELLTTGAAKPGDLALLIGYGAGLSYAAQVVR 331
>pdb|3H77|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
pdb|3H77|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd In A
Covalent Complex With Anthranilate
Length = 359
Score = 30.0 bits (66), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 400 FEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIK 459
+H H +LD +++ L + +T+ R GN +S+S LA I+
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 460 KGDRTWQIAFGSGFKCNSAVWKALRSIN 487
G R + +GSG +A+++ +N
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVN 356
>pdb|3H78|A Chain A, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
pdb|3H78|B Chain B, Crystal Structure Of Pseudomonas Aeruginosa Pqsd C112a
Mutant In Complex With Anthranilic Acid
Length = 359
Score = 30.0 bits (66), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 5/88 (5%)
Query: 400 FEHFCIHAGGRAVLDELEKNLQLSDWHMEPSRMTLYRFGNTSSSSLWYELAYSEAKGRIK 459
+H H +LD +++ L + +T+ R GN +S+S LA I+
Sbjct: 274 IDHVICHQPNLRILDAVQEQLGIPQHKFA---VTVDRLGNMASASTPVTLAMFWPD--IQ 328
Query: 460 KGDRTWQIAFGSGFKCNSAVWKALRSIN 487
G R + +GSG +A+++ +N
Sbjct: 329 PGQRVLVLTYGSGATWGAALYRKPEEVN 356
>pdb|3S3L|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3S3L|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae
pdb|3T5Y|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
Length = 357
Score = 29.3 bits (64), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 421 QLSDWHMEPSRMTLYRFGNTS----SSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCN 476
+L D P T + +G T+ + + LA+ ++ GDR G+G+ C
Sbjct: 273 ELHDLLGLPDERTSWAYGRTTGHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCT 332
Query: 477 SAVWKALR 484
+AV + LR
Sbjct: 333 AAVVEILR 340
>pdb|3T5Y|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae -
Malonic Acid Covalently Linked To The Catalytic Cystein
C116
pdb|3T6S|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae In
Complex With Coa
pdb|3T8E|A Chain A, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
pdb|3T8E|B Chain B, Crystal Structure Of Cerj From Streptomyces Tendae Soaked
With Cervik
Length = 357
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 18/68 (26%), Positives = 31/68 (45%), Gaps = 4/68 (5%)
Query: 421 QLSDWHMEPSRMTLYRFGNTS----SSSLWYELAYSEAKGRIKKGDRTWQIAFGSGFKCN 476
+L D P T + +G T+ + + LA+ ++ GDR G+G+ C
Sbjct: 273 ELHDLLGLPDERTSWAYGRTTGHVGAGDQYAGLAHLVENALVQPGDRVLLFGGGAGYTCT 332
Query: 477 SAVWKALR 484
+AV + LR
Sbjct: 333 AAVVEILR 340
>pdb|2X9M|A Chain A, Hendra Virus Attachment Glycoprotein
pdb|2X9M|B Chain B, Hendra Virus Attachment Glycoprotein
pdb|2X9M|C Chain C, Hendra Virus Attachment Glycoprotein
pdb|2X9M|D Chain D, Hendra Virus Attachment Glycoprotein
Length = 420
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 175 KEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN---HYKLRGNIIS 231
K+ + + F A+ +T + D I++C +M +N HY LR ++
Sbjct: 173 KQGDTLYFPAVG-FLPRTEFQYNDSNCPIIHCKYSKAENCRLSMGVNSKSHYILRSGLLK 231
Query: 232 YNLGGMGCSAGLISIDLANNLLQV 255
YNL +G L I++A+N L +
Sbjct: 232 YNL-SLGGDIILQFIEIADNRLTI 254
>pdb|2VSK|A Chain A, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
pdb|2VSK|C Chain C, Hendra Virus Attachment Glycoprotein In Complex With Human
Cell Surface Receptor Ephrinb2
Length = 416
Score = 28.9 bits (63), Expect = 7.6, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 39/84 (46%), Gaps = 5/84 (5%)
Query: 175 KEAEAVMFGAIDELFAKTSVKPKDIGILIVNCSLFNPTPSLSAMVIN---HYKLRGNIIS 231
K+ + + F A+ +T + D I++C +M +N HY LR ++
Sbjct: 170 KQGDTLYFPAVG-FLPRTEFQYNDSNCPIIHCKYSKAENCRLSMGVNSKSHYILRSGLLK 228
Query: 232 YNLGGMGCSAGLISIDLANNLLQV 255
YNL +G L I++A+N L +
Sbjct: 229 YNL-SLGGDIILQFIEIADNRLTI 251
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.321 0.136 0.412
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,045,594
Number of Sequences: 62578
Number of extensions: 595828
Number of successful extensions: 1386
Number of sequences better than 100.0: 68
Number of HSP's better than 100.0 without gapping: 45
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 1327
Number of HSP's gapped (non-prelim): 85
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)