BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010364
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3
Length = 497
Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 98/434 (22%), Positives = 191/434 (44%), Gaps = 39/434 (8%)
Query: 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131
K+E+ DL W +NG V E + E+ + A+ D++A + VP
Sbjct: 72 GKREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRK 125
Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188
L+ T+E N + L + +++ + LA +L+ E+ SFW PYI+ L +
Sbjct: 126 LLXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE-- 181
Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247
++PL + E E+ YL + ++ + + R+Y +F + Q +P+
Sbjct: 182 -----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY-----AYFY--KVIQTHPHA 229
Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKXXXXX 304
+P ++FT+E ++ A +V + + +R AL+PL +
Sbjct: 230 NKLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNL 289
Query: 305 XXXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQY 364
+ ++AGE I ++ G + N++ +I+ GF ++N +DR+ ++ ++ D Y
Sbjct: 290 EDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLY 349
Query: 365 QDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL---------GYVSDTSEMQSVI 415
K V R G + VF +H E + +L +LR+ ++ S + +
Sbjct: 350 AXKAEVLARAGIPTSSVFALHF-TEPPISAQLLAFLRVFCXTEEELKEHLLGDSAIDRIF 408
Query: 416 SSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVR 475
+ PVS E + L D L Y T+ ED+++L +++L + + A +L
Sbjct: 409 TLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKXAIKLRL 468
Query: 476 MEKKMLNACLQVTA 489
EK++L ++ A
Sbjct: 469 GEKEILEKAVKSAA 482
>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|B Chain B, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1MLV|C Chain C, Structure And Catalytic Mechanism Of A Set Domain Protein
Methyltransferase
pdb|1OZV|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1OZV|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Lysine And Adohcy
pdb|1P0Y|A Chain A, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|B Chain B, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
pdb|1P0Y|C Chain C, Crystal Structure Of The Set Domain Of Lsmt Bound To
Melysine And Adohcy
Length = 444
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 153/377 (40%), Gaps = 24/377 (6%)
Query: 113 VAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGK 172
+ A +D+ D VP L + + V +E ++L + L+L+ E+ + +
Sbjct: 40 LVALKDISRNDVILQVPKRLWINPDAVAASEIGR---VCSELKPWLSVILFLIRERSR-E 95
Query: 173 KSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELD 232
S W Y L ++ +S + WSE EL L GS + E +K E +L+
Sbjct: 96 DSVWKHYFGILPQE-------TDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLE 148
Query: 233 TVWFMAGSLFQQYPYDIPTEAFTFEIFK-QAFVAVQS-CVVHLQKVSLARRFALVPLGPP 290
+ P + + F I + +AF +++ +V + L A V
Sbjct: 149 QEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDH 208
Query: 291 LLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVV-WCGPQPNSKLLINYGFVDEDNPYD 349
AY K KAGE + + + + N++L ++YGF++ +
Sbjct: 209 --AYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH 266
Query: 350 RLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTS 409
+ ++ DP + DK VA+ NG F + R +LPYLRL + T
Sbjct: 267 AYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP--GLLPYLRLVALGGTD 324
Query: 410 E--MQSVI--SSLGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLH 464
++S+ + G + VS E + + + K+ LAGY T+ +D L + NL
Sbjct: 325 AFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRE-LKEGNLD 383
Query: 465 PKKRVATQLVRMEKKML 481
+ +A + EK +L
Sbjct: 384 SRLAIAVGIREGEKMVL 400
>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|B Chain B, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H21|C Chain C, Structure Of Rubisco Lsmt Bound To Adomet
pdb|2H23|A Chain A, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|B Chain B, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H23|C Chain C, Structure Of Rubisco Lsmt Bound To Trimethyllysine And
Adohcy
pdb|2H2E|A Chain A, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|B Chain B, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2E|C Chain C, Structure Of Rubisco Lsmt Bound To Azaadomet And Lysine
pdb|2H2J|A Chain A, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|B Chain B, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
pdb|2H2J|C Chain C, Structure Of Rubisco Lsmt Bound To Sinefungin And
Monomethyllysine
Length = 440
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 86/377 (22%), Positives = 153/377 (40%), Gaps = 24/377 (6%)
Query: 113 VAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGK 172
+ A +D+ D VP L + + V +E ++L + L+L+ E+ + +
Sbjct: 36 LVALKDISRNDVILQVPKRLWINPDAVAASEIGR---VCSELKPWLSVILFLIRERSR-E 91
Query: 173 KSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELD 232
S W Y L ++ +S + WSE EL L GS + E +K E +L+
Sbjct: 92 DSVWKHYFGILPQE-------TDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLE 144
Query: 233 TVWFMAGSLFQQYPYDIPTEAFTFEIFK-QAFVAVQS-CVVHLQKVSLARRFALVPLGPP 290
+ P + + F I + +AF +++ +V + L A V
Sbjct: 145 QEIILPNKRLFPDPVTLDDFFWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDH 204
Query: 291 LLAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVV-WCGPQPNSKLLINYGFVDEDNPYD 349
AY K KAGE + + + + N++L ++YGF++ +
Sbjct: 205 --AYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH 262
Query: 350 RLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTS 409
+ ++ DP + DK VA+ NG F + R +LPYLRL + T
Sbjct: 263 AYTLTLEISESDPFFDDKLDVAESNGFAQTAYFDIFYNRTLPP--GLLPYLRLVALGGTD 320
Query: 410 E--MQSVI--SSLGPI-CPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLH 464
++S+ + G + VS E + + + K+ LAGY T+ +D L + NL
Sbjct: 321 AFLLESLFRDTIWGHLELSVSRDNEELLCKAVREACKSALAGYHTTIEQDRE-LKEGNLD 379
Query: 465 PKKRVATQLVRMEKKML 481
+ +A + EK +L
Sbjct: 380 SRLAIAVGIREGEKMVL 396
>pdb|1MZH|A Chain A, Qr15, An Aldolase
pdb|1MZH|B Chain B, Qr15, An Aldolase
Length = 225
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 211 SPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCV 270
+ T ++ E E ++ ELD VW + S F+ YD E EIF++ AV +
Sbjct: 67 NKTSVKVKEAVEAVRDGAQELDIVWNL--SAFKSEKYDFVVEELK-EIFRETPSAVHKVI 123
Query: 271 V 271
V
Sbjct: 124 V 124
>pdb|3FFH|A Chain A, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262.
pdb|3FFH|B Chain B, The Crystal Structure Of Histidinol-phosphate
Aminotransferase From Listeria Innocua Clip11262
Length = 363
Score = 28.9 bits (63), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 19/78 (24%), Positives = 33/78 (42%), Gaps = 5/78 (6%)
Query: 17 IRPPHHPLSIASTISISVIRDPNFGSSLRL-----VRRKNRFSIRVSSSDTLVAGSREVV 71
+RPP + SI ++I I+D F R +++ F+ R A V+
Sbjct: 250 VRPPFNTTSIGQKLAIEAIKDQAFIGECRTSNANGIKQYEAFAKRFEKVKLYPANGNFVL 309
Query: 72 SKKEEDLGDLKSWMHKNG 89
+ G + S++ KNG
Sbjct: 310 IDLGIEAGTIFSYLEKNG 327
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,050,569
Number of Sequences: 62578
Number of extensions: 537562
Number of successful extensions: 1294
Number of sequences better than 100.0: 7
Number of HSP's better than 100.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 4
Number of HSP's that attempted gapping in prelim test: 1287
Number of HSP's gapped (non-prelim): 8
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)