Query 010364
Match_columns 512
No_of_seqs 192 out of 1212
Neff 7.4
Searched_HMMs 46136
Date Thu Mar 28 23:40:12 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010364.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010364hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1337 N-methyltransferase [G 100.0 8E-35 1.7E-39 312.7 28.5 325 158-496 112-454 (472)
2 KOG1338 Uncharacterized conser 100.0 5.7E-32 1.2E-36 269.1 23.0 281 76-375 7-313 (466)
3 PF09273 Rubis-subs-bind: Rubi 99.8 1.5E-18 3.1E-23 154.0 13.8 122 357-481 1-128 (128)
4 PF00856 SET: SET domain; Int 99.5 2.3E-14 5E-19 129.8 9.2 49 280-328 111-162 (162)
5 smart00317 SET SET (Su(var)3-9 97.3 0.00023 4.9E-09 60.9 4.1 44 283-327 69-116 (116)
6 KOG1085 Predicted methyltransf 88.6 0.4 8.6E-06 47.6 3.2 47 291-337 336-386 (392)
7 KOG2589 Histone tail methylase 87.7 0.55 1.2E-05 48.2 3.7 56 281-348 191-247 (453)
8 KOG1079 Transcriptional repres 81.1 1.3 2.8E-05 48.9 3.2 38 292-329 669-710 (739)
9 smart00317 SET SET (Su(var)3-9 69.9 3.9 8.4E-05 34.2 2.7 28 111-138 12-39 (116)
10 KOG1080 Histone H3 (Lys4) meth 61.2 8.4 0.00018 45.4 3.9 36 293-328 944-983 (1005)
11 KOG4442 Clathrin coat binding 50.4 17 0.00037 40.7 3.9 38 291-328 196-237 (729)
12 KOG2461 Transcription factor B 46.7 18 0.00038 38.5 3.2 35 306-340 121-155 (396)
13 KOG1083 Putative transcription 42.0 29 0.00062 40.8 4.1 34 297-330 1261-1296(1306)
14 KOG1338 Uncharacterized conser 38.3 4.6 0.0001 42.2 -2.5 71 281-353 269-343 (466)
15 COG2940 Proteins containing SE 37.9 18 0.00039 39.4 1.7 38 293-330 410-451 (480)
16 PF08666 SAF: SAF domain; Int 23.3 46 0.001 24.8 1.3 14 112-125 3-16 (63)
17 KOG3429 Predicted peptidyl-tRN 23.3 2.7E+02 0.0058 25.9 6.3 52 428-484 111-163 (172)
18 PF10281 Ish1: Putative stress 22.8 77 0.0017 21.6 2.2 16 78-93 6-21 (38)
19 TIGR02059 swm_rep_I cyanobacte 22.1 1.1E+02 0.0025 25.9 3.4 25 305-329 73-97 (101)
No 1
>KOG1337 consensus N-methyltransferase [General function prediction only]
Probab=100.00 E-value=8e-35 Score=312.71 Aligned_cols=325 Identities=34% Similarity=0.440 Sum_probs=260.1
Q ss_pred HHHHHHHHHHHhcCCCCCchHHHHhcCCCCCCCccccCCCcccCHhHhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 010364 158 ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFM 237 (512)
Q Consensus 158 ~~Lal~Ll~E~~~g~~S~W~pYi~~LP~~~~~~~~~~~~pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~~l~~~~~~ 237 (512)
..++++|+++...+..|+|++|+..||. .+++|++|..+++..|.+++....+..++..+...+.++..++..
T Consensus 112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 184 (472)
T KOG1337|consen 112 IALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS 184 (472)
T ss_pred HHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence 7899999999998888999999999999 468999999999999999999999988888888877666655433
Q ss_pred hchhhhcCCCCCCCCCCchHHHHHHHHhhhcceEeeccc------ccccccccccCCCccccCCCCC-ceeEeeeCCeEE
Q 010364 238 AGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKC-KAMLAAVDDAVQ 310 (512)
Q Consensus 238 ~~~l~~~~p~~~~~~~~t~e~f~WA~~~V~SRa~~~~~~------~~~~~~~LvPl~Dmlnnh~~~~-~~~~~~~~~~~~ 310 (512)
....+.... .+.|+++.|.||+++|.||+|+.+.. +-....+|+|++||+| |++.. .+.++..++.+.
T Consensus 185 ~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~N-H~~~~~~~~~~~~d~~~~ 259 (472)
T KOG1337|consen 185 HPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLN-HSPEVIKAGYNQEDEAVE 259 (472)
T ss_pred ccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhc-cCchhccccccCCCCcEE
Confidence 332322222 23389999999999999999986432 1235789999999875 66654 556666777999
Q ss_pred EEEeCCCCCCCeEEeccCCCChHHHHHhcCccCCCCCCCeEEEEEecCCCCcchHHHHHHHHHcCCCcccEEEEecCCCc
Q 010364 311 LVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREK 390 (512)
Q Consensus 311 l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~D~v~l~~~~~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~~~~ 390 (512)
+++.++|++||||||+||+++|.+||++||||.++||+|.|.+.+.+...|+.+..|.+.+..++......|.+...+++
T Consensus 260 l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 339 (472)
T KOG1337|consen 260 LVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEP 339 (472)
T ss_pred EEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999988888887776543
Q ss_pred cchhchHHHHHHhcC---CChHHHHHHHHhc-------CCCCCCChHhHHHHHHHHHHH-HHHHHhcCCCCHHHHHHhhc
Q 010364 391 EAISDMLPYLRLGYV---SDTSEMQSVISSL-------GPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEAMLT 459 (512)
Q Consensus 391 ~~~~~Ll~~LRv~~~---s~~~el~~~~~~~-------~~~~~is~~nE~~vl~~L~~~-l~~~L~~y~ttieeDe~~L~ 459 (512)
. .+++...++..+ ..+.++....+.. ...++++..+|...+..+... +...+..+.+++++++..+.
T Consensus 340 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~ 417 (472)
T KOG1337|consen 340 V--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLK 417 (472)
T ss_pred h--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhc
Confidence 2 333333333322 1222332222111 134677889999999988888 78888899999999999999
Q ss_pred cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010364 460 DYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLP 496 (512)
Q Consensus 460 ~~~~s~r~~~Ai~~R~~eK~IL~~~l~~l~~~~~~l~ 496 (512)
++.++.+..++..++..+|+||.+.+..+..+...+.
T Consensus 418 ~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~ 454 (472)
T KOG1337|consen 418 DNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLLH 454 (472)
T ss_pred ccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhcc
Confidence 8888899999999999999999999999985554443
No 2
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=100.00 E-value=5.7e-32 Score=269.10 Aligned_cols=281 Identities=19% Similarity=0.233 Sum_probs=218.5
Q ss_pred hchhHHHHHHHHCC-CCCC-CcEEeecCCCCC-CCCCeeeEEeecCCCCCCeEEEecCCCccChhhhc-C--cchHHHhh
Q 010364 76 EDLGDLKSWMHKNG-LPPC-KVILKEKPSHNE-KHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVL-G--NETIAELL 149 (512)
Q Consensus 76 ~~~~~f~~Wl~~~G-~~~~-~v~i~~~~~~~g-~Grg~~Gl~At~dI~~ge~ll~IP~~l~ls~~~a~-~--~~~l~~~l 149 (512)
+-.+.|+.|++..+ .+.+ +|.+.+.+..++ .| +|++|+++|++|+.+|.+|++.++++.+.. . -|...+++
T Consensus 7 d~~~~fl~w~k~t~eletSpKi~~ndl~~v~~~~G---~g~vAtesIkkgE~Lf~~prdsvLsvtts~li~~lps~~rv~ 83 (466)
T KOG1338|consen 7 DLAKRFLLWGKLTLELETSPKIDNNDLPWVERIAG---AGIVATESIKKGESLFAYPRDSVLSVTTSALITPLPSDIRVL 83 (466)
T ss_pred cHHHHHHHHHHHhhheeecccccccccchhhhhcc---cceeeehhhcCCceEEEecCccEEeeehHHhcccchHHHHHH
Confidence 34789999999987 5554 888887765432 24 389999999999999999999999987643 2 23333322
Q ss_pred ccCCCChhHHHHHHHHHHHhcCCCCCchHHHHhcCCCCCCCccccCCCcccCHhHhhcccCCchHHHHHHHHHHHHHHHH
Q 010364 150 TTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYN 229 (512)
Q Consensus 150 ~~~~l~~~~~Lal~Ll~E~~~g~~S~W~pYi~~LP~~~~~~~~~~~~pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~ 229 (512)
- ++.+.|..|++.|++|...+.+|+|+||+..+|++. ..++|+||+++|+..|..+.+.++..+..+.++++|.
T Consensus 84 L-ne~gsw~~Lllvll~E~~~pq~SrWrPYfs~wp~p~-----rm~spifWdEnEl~~Ll~stvlee~~Kd~aeI~~~~i 157 (466)
T KOG1338|consen 84 L-NEVGSWGMLLLVLLREKKMPQKSRWRPYFSRWPQPA-----RMHSPIFWDENELSMLLCSTVLEETVKDKAEIEKDFI 157 (466)
T ss_pred h-hcCCcHHHHHHHHHHHhhcccccccccHHHhCCChh-----hcCCCccCCchHHHHHhhcccchhhHhHHHHHHHHHH
Confidence 2 678899999999999997666699999999999986 7999999999999966555555658888999999998
Q ss_pred HHHHHHHhhchhhhcCCCCCCCCCCchHHHHHHHHhhhcceEeeccc-----------ccccccccccCCCccccCCCCC
Q 010364 230 ELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV-----------SLARRFALVPLGPPLLAYSSKC 298 (512)
Q Consensus 230 ~l~~~~~~~~~l~~~~p~~~~~~~~t~e~f~WA~~~V~SRa~~~~~~-----------~~~~~~~LvPl~Dmlnnh~~~~ 298 (512)
.+.. .+...+|..+ +.+++|+|..+++++.+.+|.+.-. .-....+|+|.+||+||.+..|
T Consensus 158 ~~i~------pf~~~~p~vf--s~~slEdF~y~~Al~laysfdve~~~s~~~~eee~e~e~ngk~m~p~ad~lNhd~~k~ 229 (466)
T KOG1338|consen 158 FVIQ------PFKQHCPIVF--SRPSLEDFMYAYALGLAYSFDVEFLLSLDNLEEESEIECNGKLMTPIADFLNHDGLKA 229 (466)
T ss_pred HHHH------HHHHhCcchh--cccCHHHHHHHHHHHHHHheeeehhcchhhhhhhhccccCcccccchhhhhccchhhc
Confidence 8765 3455677554 3489999999999999999976421 0123579999999997666669
Q ss_pred ceeEeeeCCeEEEEEeCCCCCCCeEEeccCCCChHHHHHhcCccCCCCCC-C--------eEEEEEecCCCCcchHHHHH
Q 010364 299 KAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY-D--------RLVVEAALNTEDPQYQDKRM 369 (512)
Q Consensus 299 ~~~~~~~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~-D--------~v~l~~~~~~~d~~~~~K~~ 369 (512)
++.+.++++|+.|+|+|+|++|+||+++||.++|. |++||.+.-.-.| + .+.+-.+++.+++.+..|..
T Consensus 230 nanl~y~~NcL~mva~r~iekgdev~n~dg~~p~~--l~~l~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~i 307 (466)
T KOG1338|consen 230 NANLRYEDNCLEMVADRNIEKGDEVDNSDGLKPMG--LLKLTKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLI 307 (466)
T ss_pred ccceeccCcceeeeecCCCCCccccccccccCcch--hhhhhhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHH
Confidence 99999999999999999999999999999999998 8899988765332 2 22223345556666677766
Q ss_pred HHHHcC
Q 010364 370 VAQRNG 375 (512)
Q Consensus 370 lL~~~g 375 (512)
+++.++
T Consensus 308 l~ql~n 313 (466)
T KOG1338|consen 308 LLQLHN 313 (466)
T ss_pred HHHhcc
Confidence 555554
No 3
>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices. It allows binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex []. ; PDB: 3QXY_A 3RC0_A 1P0Y_A 2H2E_C 2H23_A 1MLV_C 2H2J_B 2H21_B 1OZV_C 3SMT_A.
Probab=99.79 E-value=1.5e-18 Score=153.96 Aligned_cols=122 Identities=32% Similarity=0.483 Sum_probs=105.2
Q ss_pred cCCCCcchHHHHHHHHHcCCCcccEEEEecCCCccchhchHHHHHHhcCCChHHHHHHHHhcC------CCCCCChHhHH
Q 010364 357 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLG------PICPVSPCMER 430 (512)
Q Consensus 357 ~~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~~~~~~~~~Ll~~LRv~~~s~~~el~~~~~~~~------~~~~is~~nE~ 430 (512)
++++||+++.|.++|+.+|+.....|.+..++. ++.+|++++||++|+ ++|+..+..... ...++|..||.
T Consensus 1 l~~~D~l~~~K~~lL~~~gl~~~~~f~l~~~~~--~~~~Ll~~lRv~~~~-~~e~~~~~~~~~~~~~~~~~~~ls~~nE~ 77 (128)
T PF09273_consen 1 LSPSDPLFEEKKQLLEEHGLSGDQTFDLRADGP--LPPELLAALRVLLMT-EEELRALKSLADSSEWSDRSEPLSPENEI 77 (128)
T ss_dssp --TTSTTHHHHHHHHHHTTS-SEEEEEEECCSS--SHHHHHHHHHHHHSC-HHHHHHHHHCGTTTHCCHCCC-SBHHHHH
T ss_pred CCchhhhHHHHHHHHHHCCCCCCceeeeeCCCC--CCHHHHHHHHHHHcC-hHHHHHHHHhhcccccccccCCCchhhHH
Confidence 357899999999999999999888999998864 689999999999994 788877765432 23578999999
Q ss_pred HHHHHHHHHHHHHHhcCCCCHHHHHHhhccCCCChhHHHHHHHHHHHHHHH
Q 010364 431 AVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKML 481 (512)
Q Consensus 431 ~vl~~L~~~l~~~L~~y~ttieeDe~~L~~~~~s~r~~~Ai~~R~~eK~IL 481 (512)
+|+++|...|..+|+.|+||+|||+++|++.....++++|++||++||+||
T Consensus 78 ~~l~~L~~~~~~~L~~y~TtleeD~~~L~~~~~~~~~~~A~~~R~~EK~IL 128 (128)
T PF09273_consen 78 AALQFLIDLCEARLSAYPTTLEEDEELLQSNDLSSRRRMALQVRLGEKRIL 128 (128)
T ss_dssp HHHHHHHHHHHHHHTTSSS-HHHHHHHCHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhCCCcHHHHHHHHhcCCCcHHHHHHHHHHHHhHhcC
Confidence 999999999999999999999999999999887888999999999999997
No 4
>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco. The SET domain itself turned out to be an uncommon structure. Although in all three studies, electron density maps revealed the location of the AdoMet or AdoHcy cofactor, the SET domain bears no similarity at all to the canonical/AdoMet-dependent methyltransferase fold. Strictly conserved in the C-terminal motif of the SET domain tyrosine could be involved in abstracting a proton from the protonated amino group of the substrate lysine, promoting its nucleophilic attack on the sulphonium methyl group of the AdoMet cofactor. In contrast to the AdoMet-dependent protein methyltranferases of the classical type, which tend to bind their polypeptide substrates on top of the cofactor, it is noted from the Rubisco LSMT structure that the AdoMet seems to bind in a separate cleft, suggesting how a polypeptide substrate could be subjected to multiple rounds of methylation without having to be released from the enzyme. In contrast, SET7/9 is able to add only a single methyl group to its substrate. It has been demonstrated that association of SET domain and myotubularin-related proteins modulates growth control []. The SET domain-containing Drosophila melanogaster (Fruit fly) protein, enhancer of zeste, has a function in segment determination and the mammalian homologue may be involved in the regulation of gene transcription and chromatin structure. Histone lysine methylation is part of the histone code that regulated chromatin function and epigenetic control of gene function. Histone lysine methyltransferases (HMTase) differ both in their substrate specificity for the various acceptor lysines as well as in their product specificity for the number of methyl groups (one, two, or three) they transfer. With just one exception [], the HMTases belong to SET family that can be classified according to the sequences surrounding the SET domain [, ]. Structural studies on the human SET7/9, a mono-methylase, have revealed the molecular basis for the specificity of the enzyme for the histone-target and the roles of the invariant residues in the SET domain in determining the methylation specificities []. The pre-SET domain, as found in the SUV39 SET family, contains nine invariant cysteine residues that are grouped into two segments separated by a region of variable length. These 9 cysteines coordinate 3 zinc ions to form to form a triangular cluster, where each of the zinc ions is coordinated by 4 four cysteines to give a tetrahedral configuration. The function of this domain is structural, holding together 2 long segments of random coils. The C-terminal region including the post-SET domain is disordered when not interacting with a histone tail and in the absence of zinc. The three conserved cysteines in the post-SET domain form a zinc-binding site when coupled to a fourth conserved cysteine in the knot-like structure close to the SET domain active site []. The structured post-SET region brings in the C-terminal residues that participate in S-adenosylmethine-binding and histone tail interactions. The three conserved cysteine residues are essential for HMTase activity, as replacement with serine abolishes HMTase activity [], []. ; GO: 0005515 protein binding; PDB: 3TG5_A 3S7F_A 3RIB_B 3TG4_A 3S7J_A 3S7D_A 3S7B_A 3H6L_A 3SMT_A 3K5K_A ....
Probab=99.53 E-value=2.3e-14 Score=129.78 Aligned_cols=49 Identities=22% Similarity=0.339 Sum_probs=38.1
Q ss_pred cccccccCCCccccCC-CCCceeEe--eeCCeEEEEEeCCCCCCCeEEeccC
Q 010364 280 RRFALVPLGPPLLAYS-SKCKAMLA--AVDDAVQLVVDRPYKAGESIVVWCG 328 (512)
Q Consensus 280 ~~~~LvPl~Dmlnnh~-~~~~~~~~--~~~~~~~l~a~r~i~~GeEv~isYG 328 (512)
...+|+|++||+||.+ ++|.+.+. ..++.++++|.|+|++|||||++||
T Consensus 111 ~~~~l~p~~d~~NHsc~pn~~~~~~~~~~~~~~~~~a~r~I~~GeEi~isYG 162 (162)
T PF00856_consen 111 DGIALYPFADMLNHSCDPNCEVSFDFDGDGGCLVVRATRDIKKGEEIFISYG 162 (162)
T ss_dssp EEEEEETGGGGSEEESSTSEEEEEEEETTTTEEEEEESS-B-TTSBEEEEST
T ss_pred cccccCcHhHheccccccccceeeEeecccceEEEEECCccCCCCEEEEEEC
Confidence 4689999999987543 25555554 2578999999999999999999999
No 5
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=97.32 E-value=0.00023 Score=60.85 Aligned_cols=44 Identities=16% Similarity=0.125 Sum_probs=33.7
Q ss_pred ccccCCCccccCCCCCceeE--eeeCC--eEEEEEeCCCCCCCeEEecc
Q 010364 283 ALVPLGPPLLAYSSKCKAML--AAVDD--AVQLVVDRPYKAGESIVVWC 327 (512)
Q Consensus 283 ~LvPl~Dmlnnh~~~~~~~~--~~~~~--~~~l~a~r~i~~GeEv~isY 327 (512)
.+.|+++++| |+...|+.+ ...++ .+.++|.|+|++||||+++|
T Consensus 69 ~~~~~~~~iN-Hsc~pN~~~~~~~~~~~~~~~~~a~r~I~~GeEi~i~Y 116 (116)
T smart00317 69 RKGNIARFIN-HSCEPNCELLFVEVNGDSRIVIFALRDIKPGEELTIDY 116 (116)
T ss_pred ccCcHHHeeC-CCCCCCEEEEEEEECCCcEEEEEECCCcCCCCEEeecC
Confidence 4889999775 665555443 33344 59999999999999999999
No 6
>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]
Probab=88.56 E-value=0.4 Score=47.60 Aligned_cols=47 Identities=21% Similarity=0.298 Sum_probs=35.2
Q ss_pred cccCCC--CCceeEeeeC--CeEEEEEeCCCCCCCeEEeccCCCChHHHHH
Q 010364 291 LLAYSS--KCKAMLAAVD--DAVQLVVDRPYKAGESIVVWCGPQPNSKLLI 337 (512)
Q Consensus 291 lnnh~~--~~~~~~~~~~--~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl 337 (512)
|.||+. ||...+..-+ ..+.+.|.++|.+|||+...||.+|-+.++.
T Consensus 336 LINHS~~gNl~TKvv~Idg~pHLiLvA~rdIa~GEELlYDYGDRSkesi~~ 386 (392)
T KOG1085|consen 336 LINHSVRGNLKTKVVEIDGSPHLILVARRDIAQGEELLYDYGDRSKESIAK 386 (392)
T ss_pred hhcccccCcceeeEEEecCCceEEEEeccccccchhhhhhccccchhHHhh
Confidence 446753 5555544333 4699999999999999999999998776654
No 7
>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]
Probab=87.69 E-value=0.55 Score=48.17 Aligned_cols=56 Identities=23% Similarity=0.355 Sum_probs=40.2
Q ss_pred ccccccCCCccccCCCCCceeEeeeC-CeEEEEEeCCCCCCCeEEeccCCCChHHHHHhcCccCCCCCC
Q 010364 281 RFALVPLGPPLLAYSSKCKAMLAAVD-DAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPY 348 (512)
Q Consensus 281 ~~~LvPl~Dmlnnh~~~~~~~~~~~~-~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~ 348 (512)
.+.|=|-+ ++ ||+-..|-.|...+ +...+++.|||++||||+--||. ||.-++|.+
T Consensus 191 qLwLGPaa-fI-NHDCrpnCkFvs~g~~tacvkvlRDIePGeEITcFYgs----------~fFG~~N~~ 247 (453)
T KOG2589|consen 191 QLWLGPAA-FI-NHDCRPNCKFVSTGRDTACVKVLRDIEPGEEITCFYGS----------GFFGENNEE 247 (453)
T ss_pred hheeccHH-hh-cCCCCCCceeecCCCceeeeehhhcCCCCceeEEeecc----------cccCCCCce
Confidence 35667776 35 56544344455555 78999999999999999999996 566666653
No 8
>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]
Probab=81.13 E-value=1.3 Score=48.88 Aligned_cols=38 Identities=26% Similarity=0.319 Sum_probs=29.1
Q ss_pred ccCCCC--Cce--eEeeeCCeEEEEEeCCCCCCCeEEeccCC
Q 010364 292 LAYSSK--CKA--MLAAVDDAVQLVVDRPYKAGESIVVWCGP 329 (512)
Q Consensus 292 nnh~~~--~~~--~~~~~~~~~~l~a~r~i~~GeEv~isYG~ 329 (512)
.||+.+ |-+ ..-..+..+-+.|.|.|++|||+|..|+=
T Consensus 669 ANHS~nPNCYAkvm~V~GdhRIGifAkRaIeagEELffDYrY 710 (739)
T KOG1079|consen 669 ANHSFNPNCYAKVMMVAGDHRIGIFAKRAIEAGEELFFDYRY 710 (739)
T ss_pred ccCCCCCCcEEEEEEecCCcceeeeehhhcccCceeeeeecc
Confidence 467755 434 34456678889999999999999999973
No 9
>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain. Putative methyl transferase, based on outlier plant homologues
Probab=69.93 E-value=3.9 Score=34.22 Aligned_cols=28 Identities=21% Similarity=0.227 Sum_probs=23.7
Q ss_pred eeEEeecCCCCCCeEEEecCCCccChhh
Q 010364 111 HYVAASEDLQAGDAAFSVPNSLVVTLER 138 (512)
Q Consensus 111 ~Gl~At~dI~~ge~ll~IP~~l~ls~~~ 138 (512)
+||+|+++|++|+.|+..+-.++.....
T Consensus 12 ~gl~a~~~i~~g~~i~~~~g~~~~~~~~ 39 (116)
T smart00317 12 WGVRATEDIPKGEFIGEYVGEIITSEEA 39 (116)
T ss_pred EEEEECCccCCCCEEEEEEeEEECHHHH
Confidence 4899999999999999998887766543
No 10
>KOG1080 consensus Histone H3 (Lys4) methyltransferase complex, subunit SET1 and related methyltransferases [Chromatin structure and dynamics; Transcription]
Probab=61.18 E-value=8.4 Score=45.42 Aligned_cols=36 Identities=22% Similarity=0.301 Sum_probs=28.2
Q ss_pred cCC--CCCceeEeeeC--CeEEEEEeCCCCCCCeEEeccC
Q 010364 293 AYS--SKCKAMLAAVD--DAVQLVVDRPYKAGESIVVWCG 328 (512)
Q Consensus 293 nh~--~~~~~~~~~~~--~~~~l~a~r~i~~GeEv~isYG 328 (512)
||+ +||-+.....+ ..++++|.|+|.+||||+..|-
T Consensus 944 nHsC~PNCyakvi~V~g~~~IvIyakr~I~~~EElTYDYk 983 (1005)
T KOG1080|consen 944 NHSCNPNCYAKVITVEGDKRIVIYSKRDIAAGEELTYDYK 983 (1005)
T ss_pred ecccCCCceeeEEEecCeeEEEEEEecccccCceeeeecc
Confidence 464 56877665433 4799999999999999998885
No 11
>KOG4442 consensus Clathrin coat binding protein/Huntingtin interacting protein HIP1, involved in regulation of endocytosis [Intracellular trafficking, secretion, and vesicular transport]
Probab=50.40 E-value=17 Score=40.67 Aligned_cols=38 Identities=18% Similarity=0.191 Sum_probs=26.6
Q ss_pred cccCCC--CCce-eEeeeC-CeEEEEEeCCCCCCCeEEeccC
Q 010364 291 LLAYSS--KCKA-MLAAVD-DAVQLVVDRPYKAGESIVVWCG 328 (512)
Q Consensus 291 lnnh~~--~~~~-~~~~~~-~~~~l~a~r~i~~GeEv~isYG 328 (512)
|.||+- ||.+ .|+..+ -.+-+.+.+.|++||||+..|+
T Consensus 196 FiNHSC~PNa~~~KWtV~~~lRvGiFakk~I~~GEEITFDYq 237 (729)
T KOG4442|consen 196 FINHSCDPNAEVQKWTVPDELRVGIFAKKVIKPGEEITFDYQ 237 (729)
T ss_pred hhcCCCCCCceeeeeeeCCeeEEEEeEecccCCCceeeEecc
Confidence 335764 4444 366543 2455778999999999999987
No 12
>KOG2461 consensus Transcription factor BLIMP-1/PRDI-BF1, contains C2H2-type Zn-finger and SET domains [Transcription]
Probab=46.67 E-value=18 Score=38.47 Aligned_cols=35 Identities=20% Similarity=0.411 Sum_probs=30.9
Q ss_pred CCeEEEEEeCCCCCCCeEEeccCCCChHHHHHhcC
Q 010364 306 DDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG 340 (512)
Q Consensus 306 ~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YG 340 (512)
++.+.+++.|+|.+|||+.++||.--+.+|...+|
T Consensus 121 ~~~Ifyrt~r~I~p~eELlVWY~~e~~~~L~~~~~ 155 (396)
T KOG2461|consen 121 GENIFYRTIRDIRPNEELLVWYGSEYAEELAYGHG 155 (396)
T ss_pred cCceEEEecccCCCCCeEEEEeccchHhHhcccCC
Confidence 46788999999999999999999877888877777
No 13
>KOG1083 consensus Putative transcription factor ASH1/LIN-59 [Transcription]
Probab=42.05 E-value=29 Score=40.79 Aligned_cols=34 Identities=18% Similarity=0.222 Sum_probs=24.7
Q ss_pred CCc-eeEeeeCC-eEEEEEeCCCCCCCeEEeccCCC
Q 010364 297 KCK-AMLAAVDD-AVQLVVDRPYKAGESIVVWCGPQ 330 (512)
Q Consensus 297 ~~~-~~~~~~~~-~~~l~a~r~i~~GeEv~isYG~~ 330 (512)
+|. ..|...+. .+-+.|.|||.+||||+..|..+
T Consensus 1261 Nc~~qkwSVNG~~Rv~L~A~rDi~kGEELtYDYN~k 1296 (1306)
T KOG1083|consen 1261 NCEMQKWSVNGEYRVGLFALRDLPKGEELTYDYNFK 1296 (1306)
T ss_pred CCccccccccceeeeeeeecCCCCCCceEEEecccc
Confidence 444 24554432 46788999999999999999654
No 14
>KOG1338 consensus Uncharacterized conserved protein [Function unknown]
Probab=38.32 E-value=4.6 Score=42.17 Aligned_cols=71 Identities=13% Similarity=-0.057 Sum_probs=54.5
Q ss_pred ccccccCCCccccCCCCCcee--EeeeCCeEEEEEeCCCCCCCeEEeccCCCChHHHHHhcC-ccCC-CCCCCeEEE
Q 010364 281 RFALVPLGPPLLAYSSKCKAM--LAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYG-FVDE-DNPYDRLVV 353 (512)
Q Consensus 281 ~~~LvPl~Dmlnnh~~~~~~~--~~~~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YG-Fv~~-~Np~D~v~l 353 (512)
..++.|+.+|++--..-|+.. +....+...|++.|.+ |.|.-++|+...+.++...|| |+.. --|++.+-+
T Consensus 269 ~ka~c~gihm~~g~~~l~niv~~l~D~~~d~tm~~~R~i--l~ql~nt~teld~~e~~~syd~ftkkE~~p~~g~lv 343 (466)
T KOG1338|consen 269 TKALCVGIHMVWGILKLYNIVQILMDVPNDDTMRNMRLI--LLQLHNTRTELDINEFHSSYDTFTKKEVKPAIGKLV 343 (466)
T ss_pred hhhccceeeeecceeecchHHHHHhcCCCcchHHHHHHH--HHHhccchhhhhhHHHHHhhhhhhhccccccceeee
Confidence 468899999876433334433 3445677889999998 999999999999999999999 5544 378887776
No 15
>COG2940 Proteins containing SET domain [General function prediction only]
Probab=37.93 E-value=18 Score=39.43 Aligned_cols=38 Identities=26% Similarity=0.281 Sum_probs=26.5
Q ss_pred cCCCCCc--eeEeeeCC--eEEEEEeCCCCCCCeEEeccCCC
Q 010364 293 AYSSKCK--AMLAAVDD--AVQLVVDRPYKAGESIVVWCGPQ 330 (512)
Q Consensus 293 nh~~~~~--~~~~~~~~--~~~l~a~r~i~~GeEv~isYG~~ 330 (512)
||+...| +......| .+..++.++|++||||.+.||..
T Consensus 410 nHS~~pN~~~~~~~~~g~~~~~~~~~rDI~~geEl~~dy~~~ 451 (480)
T COG2940 410 NHSCTPNCEASPIEVNGIFKISIYAIRDIKAGEELTYDYGPS 451 (480)
T ss_pred ecCCCCCcceecccccccceeeecccccchhhhhhccccccc
Confidence 4665444 33223333 67788999999999999999863
No 16
>PF08666 SAF: SAF domain; InterPro: IPR013974 This entry includes a range of different proteins, such as antifreeze proteins, flagellar FlgA proteins, and CpaB pilus proteins. ; PDB: 1C89_A 3NLA_A 3RDN_A 1C8A_A 3FRN_A 1WVO_A 3K3S_H 3G8R_B 1XUU_A 1XUZ_A ....
Probab=23.32 E-value=46 Score=24.80 Aligned_cols=14 Identities=36% Similarity=0.522 Sum_probs=10.7
Q ss_pred eEEeecCCCCCCeE
Q 010364 112 YVAASEDLQAGDAA 125 (512)
Q Consensus 112 Gl~At~dI~~ge~l 125 (512)
-++|++||++|+.|
T Consensus 3 vvVA~~di~~G~~i 16 (63)
T PF08666_consen 3 VVVAARDIPAGTVI 16 (63)
T ss_dssp EEEESSTB-TT-BE
T ss_pred EEEEeCccCCCCEE
Confidence 48999999999987
No 17
>KOG3429 consensus Predicted peptidyl-tRNA hydrolase [Translation, ribosomal structure and biogenesis]
Probab=23.30 E-value=2.7e+02 Score=25.86 Aligned_cols=52 Identities=21% Similarity=0.148 Sum_probs=38.5
Q ss_pred hHHHHHHHHHHHHHHHHhcCC-CCHHHHHHhhccCCCChhHHHHHHHHHHHHHHHHHH
Q 010364 428 MERAVLDQLADYFKARLAGYP-ATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNAC 484 (512)
Q Consensus 428 nE~~vl~~L~~~l~~~L~~y~-ttieeDe~~L~~~~~s~r~~~Ai~~R~~eK~IL~~~ 484 (512)
|-..+++-|++++...-..-+ .+-+||.+.+ ..+...|.+=|+.||++....
T Consensus 111 NiaDcleKlr~~I~~~~~~~~~~~teE~~kk~-----r~~~e~an~eRL~~Kk~~s~k 163 (172)
T KOG3429|consen 111 NIADCLEKLRDIIRAAEQTPPVDPTEETIKKI-----RIRKEKANRERLQEKKVHSDK 163 (172)
T ss_pred cHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHH-----HHHHHHHHHHHHHHHHhhhHH
Confidence 445678888888888765544 5667887765 357888999999999987654
No 18
>PF10281 Ish1: Putative stress-responsive nuclear envelope protein; InterPro: IPR018803 This group of proteins, found primarily in fungi, consists of putative stress-responsive nuclear envelope protein Ish1 and homologues [].
Probab=22.78 E-value=77 Score=21.56 Aligned_cols=16 Identities=44% Similarity=0.864 Sum_probs=13.7
Q ss_pred hhHHHHHHHHCCCCCC
Q 010364 78 LGDLKSWMHKNGLPPC 93 (512)
Q Consensus 78 ~~~f~~Wl~~~G~~~~ 93 (512)
-.+|.+||.++|+..+
T Consensus 6 ~~~L~~wL~~~gi~~~ 21 (38)
T PF10281_consen 6 DSDLKSWLKSHGIPVP 21 (38)
T ss_pred HHHHHHHHHHcCCCCC
Confidence 4689999999998875
No 19
>TIGR02059 swm_rep_I cyanobacterial long protein repeat. This domain appears in 29 copies in a large (10000 amino protein in Synechococcus sp. WH8102 associated with a novel flagellar system, as one of three different repeats. Similar domains are found in two different large (<3500) proteins of Synechocystis PCC6803.
Probab=22.08 E-value=1.1e+02 Score=25.87 Aligned_cols=25 Identities=8% Similarity=0.252 Sum_probs=21.8
Q ss_pred eCCeEEEEEeCCCCCCCeEEeccCC
Q 010364 305 VDDAVQLVVDRPYKAGESIVVWCGP 329 (512)
Q Consensus 305 ~~~~~~l~a~r~i~~GeEv~isYG~ 329 (512)
....+.+.-.+.|..||+|.++|-.
T Consensus 73 s~ktVTLTL~~~V~~Gq~VTVsYt~ 97 (101)
T TIGR02059 73 SNTTITLTLAQVVEDGDEVTLSYTK 97 (101)
T ss_pred cccEEEEEecccccCCCEEEEEeeC
Confidence 3458999999999999999999954
Done!