Query 010366
Match_columns 512
No_of_seqs 490 out of 3118
Neff 8.1
Searched_HMMs 46136
Date Thu Mar 28 23:41:38 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010366.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010366hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0742 AAA+-type ATPase [Post 100.0 9.3E-75 2E-79 567.8 45.5 473 37-510 154-628 (630)
2 COG1222 RPT1 ATP-dependent 26S 100.0 1.2E-37 2.7E-42 303.9 19.9 240 232-497 144-395 (406)
3 COG1223 Predicted ATPase (AAA+ 100.0 2.3E-35 4.9E-40 275.8 17.4 236 232-493 114-354 (368)
4 KOG0730 AAA+-type ATPase [Post 100.0 8.2E-35 1.8E-39 303.2 21.6 240 232-498 427-678 (693)
5 KOG0734 AAA+-type ATPase conta 100.0 7.1E-35 1.5E-39 295.2 15.8 239 235-502 300-549 (752)
6 KOG0738 AAA+-type ATPase [Post 100.0 5E-33 1.1E-37 273.2 19.7 242 231-498 204-473 (491)
7 KOG0733 Nuclear AAA ATPase (VC 100.0 1.4E-32 3E-37 282.6 18.1 246 232-502 504-777 (802)
8 KOG0731 AAA+-type ATPase conta 100.0 2.1E-32 4.6E-37 293.4 19.5 247 232-503 304-562 (774)
9 CHL00195 ycf46 Ycf46; Provisio 100.0 8.1E-31 1.8E-35 276.7 23.1 239 234-497 223-466 (489)
10 KOG0733 Nuclear AAA ATPase (VC 100.0 3.6E-31 7.8E-36 272.3 18.4 213 235-474 186-411 (802)
11 PTZ00454 26S protease regulato 100.0 7.2E-30 1.6E-34 264.1 22.8 243 232-500 138-392 (398)
12 KOG0727 26S proteasome regulat 100.0 1.2E-29 2.6E-34 236.5 21.9 240 232-497 148-399 (408)
13 KOG0739 AAA+-type ATPase [Post 100.0 5.1E-31 1.1E-35 250.8 10.3 211 231-467 125-343 (439)
14 PRK03992 proteasome-activating 100.0 4E-29 8.7E-34 259.6 22.1 243 232-500 124-378 (389)
15 TIGR01241 FtsH_fam ATP-depende 100.0 2.7E-29 5.9E-34 269.4 21.1 239 232-496 48-297 (495)
16 CHL00176 ftsH cell division pr 100.0 1.1E-28 2.4E-33 268.2 22.9 239 233-497 177-426 (638)
17 KOG0728 26S proteasome regulat 100.0 4.8E-29 1E-33 232.2 16.3 261 210-497 119-391 (404)
18 COG0465 HflB ATP-dependent Zn 100.0 3.4E-29 7.4E-34 264.7 16.6 245 233-503 144-399 (596)
19 PTZ00361 26 proteosome regulat 100.0 2.3E-28 4.9E-33 254.5 21.9 240 232-497 176-427 (438)
20 COG0464 SpoVK ATPases of the A 100.0 3.3E-28 7.2E-33 261.5 22.8 239 232-495 235-484 (494)
21 KOG0736 Peroxisome assembly fa 100.0 1.6E-28 3.4E-33 258.6 18.4 242 231-498 664-936 (953)
22 TIGR01243 CDC48 AAA family ATP 100.0 3.1E-28 6.8E-33 272.6 21.3 239 233-497 447-713 (733)
23 KOG0737 AAA+-type ATPase [Post 100.0 2.7E-28 5.9E-33 240.0 17.0 236 233-495 86-360 (386)
24 KOG0729 26S proteasome regulat 100.0 2.5E-28 5.5E-33 229.2 14.5 243 231-499 169-423 (435)
25 KOG0726 26S proteasome regulat 100.0 1.2E-28 2.6E-33 234.0 9.0 241 231-497 177-429 (440)
26 KOG0652 26S proteasome regulat 100.0 1.9E-27 4.2E-32 222.7 16.0 240 232-497 164-415 (424)
27 KOG0735 AAA+-type ATPase [Post 99.9 1.7E-27 3.7E-32 248.6 16.8 212 236-474 664-885 (952)
28 TIGR01242 26Sp45 26S proteasom 99.9 7.3E-27 1.6E-31 241.5 21.4 237 232-494 115-363 (364)
29 PF12037 DUF3523: Domain of un 99.9 7E-26 1.5E-30 216.7 21.6 167 37-203 110-276 (276)
30 CHL00206 ycf2 Ycf2; Provisiona 99.9 1.3E-26 2.9E-31 264.4 19.5 206 266-501 1628-1884(2281)
31 PRK10733 hflB ATP-dependent me 99.9 3.2E-26 7E-31 251.5 20.5 237 235-497 148-395 (644)
32 TIGR03689 pup_AAA proteasome A 99.9 1.7E-25 3.7E-30 235.9 24.6 252 231-497 174-481 (512)
33 COG0542 clpA ATP-binding subun 99.9 3.7E-25 8E-30 239.7 23.9 218 215-467 474-747 (786)
34 KOG0740 AAA+-type ATPase [Post 99.9 7.2E-25 1.6E-29 223.3 15.7 240 232-497 146-407 (428)
35 PLN00020 ribulose bisphosphate 99.9 5.2E-24 1.1E-28 212.0 20.1 165 265-457 145-330 (413)
36 PRK10865 protein disaggregatio 99.9 8.4E-22 1.8E-26 222.5 33.9 363 37-468 410-822 (857)
37 KOG0651 26S proteasome regulat 99.9 4.7E-24 1E-28 204.8 12.7 234 236-495 129-374 (388)
38 KOG0741 AAA+-type ATPase [Post 99.9 2E-24 4.4E-29 219.4 8.1 210 268-498 256-494 (744)
39 TIGR01243 CDC48 AAA family ATP 99.9 1.3E-22 2.9E-27 227.3 21.8 238 233-497 172-438 (733)
40 KOG0730 AAA+-type ATPase [Post 99.9 1.1E-22 2.3E-27 213.0 17.7 227 239-497 184-419 (693)
41 TIGR03346 chaperone_ClpB ATP-d 99.9 9.8E-21 2.1E-25 214.7 33.8 238 184-468 529-819 (852)
42 PF05496 RuvB_N: Holliday junc 99.9 6.7E-22 1.4E-26 185.3 18.2 193 233-470 18-225 (233)
43 COG2255 RuvB Holliday junction 99.9 7.5E-21 1.6E-25 181.3 21.3 217 233-494 20-251 (332)
44 COG0466 Lon ATP-dependent Lon 99.9 4.4E-20 9.5E-25 195.1 29.1 279 185-503 289-593 (782)
45 TIGR00763 lon ATP-dependent pr 99.9 9.9E-20 2.1E-24 204.8 32.4 232 239-494 320-586 (775)
46 PRK00080 ruvB Holliday junctio 99.9 2E-20 4.3E-25 190.9 24.0 217 233-494 19-250 (328)
47 KOG0744 AAA+-type ATPase [Post 99.9 6.8E-21 1.5E-25 183.9 18.3 254 236-499 139-419 (423)
48 TIGR00635 ruvB Holliday juncti 99.9 3.5E-20 7.6E-25 187.3 23.1 212 237-493 2-228 (305)
49 KOG0732 AAA+-type ATPase conta 99.9 3.8E-21 8.3E-26 212.0 17.2 215 232-472 258-487 (1080)
50 TIGR03345 VI_ClpV1 type VI sec 99.9 1.3E-19 2.8E-24 204.3 29.5 237 185-468 531-824 (852)
51 CHL00181 cbbX CbbX; Provisiona 99.9 2E-20 4.3E-25 186.4 19.5 172 238-416 22-213 (287)
52 TIGR02881 spore_V_K stage V sp 99.9 3.5E-20 7.5E-25 183.0 20.7 200 238-469 5-233 (261)
53 COG2256 MGS1 ATPase related to 99.9 2.9E-20 6.3E-25 185.3 19.3 216 234-496 19-240 (436)
54 PRK14956 DNA polymerase III su 99.8 6.8E-20 1.5E-24 191.0 22.0 207 231-491 10-243 (484)
55 TIGR02880 cbbX_cfxQ probable R 99.8 5.9E-20 1.3E-24 183.1 20.5 199 239-468 22-247 (284)
56 PRK12323 DNA polymerase III su 99.8 7.5E-20 1.6E-24 194.9 20.5 205 231-489 8-244 (700)
57 PRK14962 DNA polymerase III su 99.8 1.4E-19 3E-24 191.3 22.1 207 232-492 7-240 (472)
58 PRK07003 DNA polymerase III su 99.8 1.9E-19 4E-24 194.1 21.4 205 231-489 8-239 (830)
59 KOG0989 Replication factor C, 99.8 1.2E-19 2.6E-24 174.9 17.6 196 231-475 28-236 (346)
60 PRK14958 DNA polymerase III su 99.8 2E-19 4.3E-24 192.0 21.0 208 231-492 8-242 (509)
61 KOG2004 Mitochondrial ATP-depe 99.8 2.1E-18 4.6E-23 181.4 26.9 206 239-468 411-643 (906)
62 PRK14960 DNA polymerase III su 99.8 4.5E-19 9.8E-24 189.4 22.0 207 231-491 7-240 (702)
63 PRK14961 DNA polymerase III su 99.8 6.7E-19 1.5E-23 181.8 22.2 208 231-492 8-242 (363)
64 PLN03025 replication factor C 99.8 4E-19 8.6E-24 180.6 19.6 204 231-490 5-219 (319)
65 PRK11034 clpA ATP-dependent Cl 99.8 4.4E-19 9.4E-24 196.5 21.0 202 238-467 457-708 (758)
66 PRK14964 DNA polymerase III su 99.8 7.8E-19 1.7E-23 185.0 21.9 207 231-491 5-238 (491)
67 PRK07994 DNA polymerase III su 99.8 8.5E-19 1.8E-23 189.8 22.5 208 231-492 8-242 (647)
68 PF00004 AAA: ATPase family as 99.8 2E-19 4.4E-24 158.0 13.3 127 271-398 1-132 (132)
69 PRK14949 DNA polymerase III su 99.8 1.6E-18 3.5E-23 190.3 22.9 193 231-468 8-222 (944)
70 PRK06645 DNA polymerase III su 99.8 2.1E-18 4.5E-23 183.1 22.6 211 231-492 13-254 (507)
71 CHL00095 clpC Clp protease ATP 99.8 3.5E-18 7.5E-23 193.4 25.6 202 238-467 508-774 (821)
72 PRK14951 DNA polymerase III su 99.8 2.7E-18 5.9E-23 185.6 22.1 207 231-491 8-246 (618)
73 PRK08691 DNA polymerase III su 99.8 2.5E-18 5.3E-23 185.4 21.2 209 231-493 8-243 (709)
74 PRK04195 replication factor C 99.8 2.8E-18 6.1E-23 183.7 21.3 211 231-491 6-222 (482)
75 TIGR02639 ClpA ATP-dependent C 99.8 1.7E-18 3.8E-23 193.7 20.5 203 238-468 453-705 (731)
76 PRK10787 DNA-binding ATP-depen 99.8 5.1E-17 1.1E-21 181.5 31.7 268 185-498 288-586 (784)
77 COG2204 AtoC Response regulato 99.8 4E-19 8.6E-24 184.1 13.0 295 120-473 48-373 (464)
78 PRK14963 DNA polymerase III su 99.8 4.7E-18 1E-22 181.1 21.4 206 232-492 7-238 (504)
79 PRK14959 DNA polymerase III su 99.8 5.1E-18 1.1E-22 182.3 21.4 210 231-491 8-241 (624)
80 PRK14957 DNA polymerase III su 99.8 7.1E-18 1.5E-22 180.1 22.4 208 231-492 8-242 (546)
81 KOG0735 AAA+-type ATPase [Post 99.8 7.9E-18 1.7E-22 176.8 21.7 239 239-508 408-662 (952)
82 PRK14969 DNA polymerase III su 99.8 5.2E-18 1.1E-22 182.3 21.0 208 231-492 8-242 (527)
83 PHA02544 44 clamp loader, smal 99.8 1.6E-17 3.5E-22 168.7 23.5 214 231-489 13-226 (316)
84 PRK05563 DNA polymerase III su 99.8 8.9E-18 1.9E-22 181.7 22.5 206 232-491 9-241 (559)
85 PRK14952 DNA polymerase III su 99.8 8.5E-18 1.8E-22 181.1 22.0 207 232-491 6-241 (584)
86 PRK05896 DNA polymerase III su 99.8 8.6E-18 1.9E-22 179.6 21.4 206 231-490 8-240 (605)
87 PRK06893 DNA replication initi 99.8 1.5E-17 3.3E-22 160.9 20.1 211 232-492 9-228 (229)
88 KOG0743 AAA+-type ATPase [Post 99.8 6.9E-18 1.5E-22 171.2 17.2 175 232-414 194-385 (457)
89 TIGR02639 ClpA ATP-dependent C 99.8 1.3E-17 2.8E-22 186.8 20.9 227 233-494 176-429 (731)
90 PRK13342 recombination factor 99.8 3.1E-17 6.7E-22 172.4 22.6 207 232-494 5-219 (413)
91 PRK14965 DNA polymerase III su 99.8 1.8E-17 3.8E-22 180.2 21.0 206 231-490 8-240 (576)
92 PRK07133 DNA polymerase III su 99.8 2.3E-17 5.1E-22 179.6 21.8 212 231-491 10-240 (725)
93 PRK14953 DNA polymerase III su 99.8 2.9E-17 6.3E-22 174.5 22.0 207 231-491 8-241 (486)
94 PRK07764 DNA polymerase III su 99.8 2.4E-17 5.1E-22 184.0 21.9 207 231-490 7-242 (824)
95 PRK08451 DNA polymerase III su 99.8 3.9E-17 8.5E-22 173.6 21.9 205 232-490 7-238 (535)
96 PTZ00112 origin recognition co 99.8 8E-17 1.7E-21 174.4 24.2 224 234-494 750-1006(1164)
97 TIGR02902 spore_lonB ATP-depen 99.8 3E-17 6.5E-22 176.9 20.9 220 231-494 57-332 (531)
98 PRK09111 DNA polymerase III su 99.8 4.9E-17 1.1E-21 176.2 22.3 213 231-492 16-255 (598)
99 PRK12402 replication factor C 99.8 3.8E-17 8.3E-22 167.2 20.5 210 232-492 8-247 (337)
100 PRK14955 DNA polymerase III su 99.8 4.4E-17 9.6E-22 170.2 21.0 215 232-491 9-254 (397)
101 COG2812 DnaX DNA polymerase II 99.8 1.8E-17 3.9E-22 174.2 17.0 212 231-491 8-241 (515)
102 PRK06305 DNA polymerase III su 99.8 9.6E-17 2.1E-21 169.5 22.7 209 232-491 10-243 (451)
103 PRK14970 DNA polymerase III su 99.8 1E-16 2.3E-21 166.1 22.6 213 231-492 9-231 (367)
104 TIGR02397 dnaX_nterm DNA polym 99.8 6.4E-17 1.4E-21 166.9 20.8 207 232-492 7-240 (355)
105 TIGR02928 orc1/cdc6 family rep 99.7 3.1E-16 6.7E-21 162.4 25.4 223 237-495 13-275 (365)
106 PRK06647 DNA polymerase III su 99.7 9.8E-17 2.1E-21 173.1 21.9 207 231-491 8-241 (563)
107 PRK08084 DNA replication initi 99.7 1.1E-16 2.3E-21 155.5 19.9 211 232-492 15-234 (235)
108 PRK00149 dnaA chromosomal repl 99.7 3.1E-17 6.8E-22 174.3 16.6 224 232-495 115-350 (450)
109 PRK14954 DNA polymerase III su 99.7 2.5E-16 5.4E-21 170.9 23.0 216 231-491 8-254 (620)
110 PRK13341 recombination factor 99.7 1.3E-16 2.9E-21 176.0 21.3 218 232-493 21-246 (725)
111 PRK00440 rfc replication facto 99.7 2.1E-16 4.6E-21 160.4 20.6 205 232-492 10-224 (319)
112 TIGR03345 VI_ClpV1 type VI sec 99.7 3.5E-16 7.7E-21 176.6 24.4 193 233-460 181-391 (852)
113 PRK00411 cdc6 cell division co 99.7 1.3E-15 2.8E-20 159.5 26.8 225 237-495 28-283 (394)
114 KOG0736 Peroxisome assembly fa 99.7 2.2E-16 4.8E-21 167.5 20.6 205 270-501 433-660 (953)
115 TIGR00362 DnaA chromosomal rep 99.7 6.9E-17 1.5E-21 169.6 16.9 223 232-495 103-338 (405)
116 KOG2028 ATPase related to the 99.7 1.3E-16 2.9E-21 156.5 17.5 226 232-494 131-368 (554)
117 PRK07940 DNA polymerase III su 99.7 2.1E-16 4.6E-21 163.6 18.8 156 237-409 3-186 (394)
118 PRK08903 DnaA regulatory inact 99.7 7.2E-16 1.6E-20 149.1 21.4 204 232-492 11-224 (227)
119 PRK12422 chromosomal replicati 99.7 2.4E-16 5.1E-21 166.0 19.3 228 232-495 104-344 (445)
120 PRK14950 DNA polymerase III su 99.7 5.2E-16 1.1E-20 169.5 22.0 206 232-491 9-242 (585)
121 PRK14086 dnaA chromosomal repl 99.7 2.7E-16 5.9E-21 168.2 18.8 225 232-496 281-517 (617)
122 PRK05642 DNA replication initi 99.7 4.9E-16 1.1E-20 150.8 18.9 214 232-492 12-233 (234)
123 TIGR03420 DnaA_homol_Hda DnaA 99.7 2.5E-16 5.5E-21 151.9 16.8 206 233-491 9-225 (226)
124 PRK05342 clpX ATP-dependent pr 99.7 3E-16 6.6E-21 163.2 18.2 219 239-468 71-372 (412)
125 PRK06620 hypothetical protein; 99.7 6.1E-16 1.3E-20 147.8 18.8 201 231-491 8-213 (214)
126 PRK11034 clpA ATP-dependent Cl 99.7 1E-15 2.3E-20 169.8 23.4 226 234-494 181-433 (758)
127 PRK14948 DNA polymerase III su 99.7 7.5E-16 1.6E-20 168.0 21.6 209 232-490 9-241 (620)
128 PRK08727 hypothetical protein; 99.7 1.1E-15 2.4E-20 148.3 19.4 210 232-493 12-230 (233)
129 KOG0991 Replication factor C, 99.7 3.1E-16 6.8E-21 145.5 14.7 197 230-477 18-222 (333)
130 PRK14088 dnaA chromosomal repl 99.7 3.2E-16 6.8E-21 165.4 16.9 223 232-495 98-333 (440)
131 TIGR00382 clpX endopeptidase C 99.7 8.3E-16 1.8E-20 159.1 19.2 221 239-470 77-380 (413)
132 KOG1051 Chaperone HSP104 and r 99.7 3.9E-16 8.4E-21 172.0 16.2 306 37-415 419-787 (898)
133 PF00308 Bac_DnaA: Bacterial d 99.7 6.4E-16 1.4E-20 148.4 15.4 204 233-473 2-215 (219)
134 PRK14971 DNA polymerase III su 99.7 3E-15 6.5E-20 163.3 22.1 207 231-491 9-243 (614)
135 COG1474 CDC6 Cdc6-related prot 99.7 6.1E-15 1.3E-19 151.3 22.6 225 239-498 17-269 (366)
136 TIGR00390 hslU ATP-dependent p 99.7 2.2E-15 4.9E-20 153.8 18.8 243 239-496 12-432 (441)
137 PRK14087 dnaA chromosomal repl 99.7 1.7E-15 3.7E-20 160.1 18.5 225 235-494 111-348 (450)
138 PRK05201 hslU ATP-dependent pr 99.7 1.8E-15 3.9E-20 154.6 17.9 243 239-496 15-434 (443)
139 COG1224 TIP49 DNA helicase TIP 99.7 1.3E-14 2.8E-19 142.5 22.2 133 328-498 292-436 (450)
140 PRK10865 protein disaggregatio 99.7 1.6E-15 3.5E-20 171.8 17.9 170 233-417 172-359 (857)
141 CHL00095 clpC Clp protease ATP 99.6 1.3E-14 2.8E-19 164.6 22.8 191 234-460 174-382 (821)
142 TIGR03346 chaperone_ClpB ATP-d 99.6 2.2E-14 4.8E-19 163.1 24.0 191 233-458 167-375 (852)
143 COG0593 DnaA ATPase involved i 99.6 1.7E-14 3.6E-19 147.8 19.0 228 232-499 80-318 (408)
144 TIGR02640 gas_vesic_GvpN gas v 99.6 6.2E-14 1.3E-18 138.5 21.7 131 270-412 23-198 (262)
145 PRK09087 hypothetical protein; 99.6 4.1E-14 9E-19 136.4 19.6 204 232-494 14-222 (226)
146 TIGR02903 spore_lon_C ATP-depe 99.6 3.7E-13 8.1E-18 147.5 28.4 218 234-495 149-431 (615)
147 PRK13407 bchI magnesium chelat 99.6 9.9E-14 2.1E-18 140.4 20.0 245 235-496 4-308 (334)
148 CHL00081 chlI Mg-protoporyphyr 99.6 1.7E-13 3.6E-18 139.1 20.9 246 235-499 13-327 (350)
149 COG3829 RocR Transcriptional r 99.6 1.7E-14 3.8E-19 149.6 13.9 212 232-472 238-477 (560)
150 PF05673 DUF815: Protein of un 99.6 1.8E-13 3.9E-18 130.4 19.1 192 233-469 21-244 (249)
151 PRK09112 DNA polymerase III su 99.6 1.5E-13 3.3E-18 140.5 20.0 159 233-411 17-212 (351)
152 PRK05564 DNA polymerase III su 99.6 1.4E-13 3.1E-18 139.5 19.3 153 237-412 2-165 (313)
153 PRK07471 DNA polymerase III su 99.6 1.7E-13 3.6E-18 140.9 18.8 159 233-412 13-213 (365)
154 TIGR02030 BchI-ChlI magnesium 99.5 6.8E-13 1.5E-17 134.6 21.4 243 238-499 3-314 (337)
155 TIGR00678 holB DNA polymerase 99.5 3.2E-13 7E-18 126.7 16.4 146 265-457 11-183 (188)
156 PRK07399 DNA polymerase III su 99.5 5.8E-13 1.3E-17 134.4 17.5 153 238-412 3-195 (314)
157 TIGR02442 Cob-chelat-sub cobal 99.5 1.4E-12 2.9E-17 143.9 20.6 245 238-499 3-309 (633)
158 TIGR01817 nifA Nif-specific re 99.5 1.2E-12 2.7E-17 142.2 19.9 214 234-488 191-439 (534)
159 PF06068 TIP49: TIP49 C-termin 99.5 5.4E-13 1.2E-17 133.4 15.4 102 328-467 279-392 (398)
160 KOG1942 DNA helicase, TBP-inte 99.5 4.3E-12 9.4E-17 121.7 20.5 133 328-498 297-442 (456)
161 PRK04132 replication factor C 99.5 1.3E-12 2.8E-17 145.5 18.7 176 266-489 562-749 (846)
162 TIGR02974 phageshock_pspF psp 99.5 2E-12 4.4E-17 131.6 18.5 196 241-471 1-230 (329)
163 PRK05707 DNA polymerase III su 99.5 1.6E-12 3.4E-17 131.9 17.6 132 265-411 19-177 (328)
164 COG3604 FhlA Transcriptional r 99.5 4.2E-13 9.1E-18 137.6 13.1 206 235-473 219-455 (550)
165 PRK10820 DNA-binding transcrip 99.5 1.3E-12 2.9E-17 141.0 17.7 203 232-471 197-434 (520)
166 PRK15424 propionate catabolism 99.5 1.9E-12 4.2E-17 138.8 18.6 216 236-487 216-478 (538)
167 TIGR03015 pepcterm_ATPase puta 99.5 1.7E-11 3.6E-16 121.5 24.0 195 270-494 45-266 (269)
168 PRK13531 regulatory ATPase Rav 99.5 5.6E-12 1.2E-16 131.6 21.1 238 239-500 20-289 (498)
169 TIGR01650 PD_CobS cobaltochela 99.5 9.7E-13 2.1E-17 131.5 14.7 133 269-412 65-233 (327)
170 TIGR02329 propionate_PrpR prop 99.5 2.6E-12 5.6E-17 137.9 18.6 219 234-488 207-464 (526)
171 TIGR00602 rad24 checkpoint pro 99.4 5.3E-12 1.2E-16 137.2 20.4 226 231-491 76-352 (637)
172 PRK08058 DNA polymerase III su 99.4 3.1E-12 6.8E-17 130.4 17.6 149 238-410 4-180 (329)
173 PRK05022 anaerobic nitric oxid 99.4 5.8E-12 1.3E-16 135.9 20.2 204 237-473 185-419 (509)
174 KOG2035 Replication factor C, 99.4 9.8E-12 2.1E-16 118.7 19.1 184 232-467 6-226 (351)
175 PRK11608 pspF phage shock prot 99.4 4.9E-12 1.1E-16 128.8 18.4 196 238-472 5-238 (326)
176 PF07724 AAA_2: AAA domain (Cd 99.4 9.8E-14 2.1E-18 127.8 5.4 111 267-379 2-130 (171)
177 cd00009 AAA The AAA+ (ATPases 99.4 4E-12 8.6E-17 112.5 15.4 121 269-398 20-151 (151)
178 PRK11388 DNA-binding transcrip 99.4 6.2E-12 1.4E-16 139.6 19.3 219 235-491 321-568 (638)
179 PF05621 TniB: Bacterial TniB 99.4 1.9E-11 4.1E-16 120.2 20.4 222 239-490 34-285 (302)
180 TIGR02915 PEP_resp_reg putativ 99.4 2.8E-12 6E-17 136.5 15.7 294 119-471 39-369 (445)
181 COG0714 MoxR-like ATPases [Gen 99.4 7.9E-12 1.7E-16 127.7 18.2 240 239-497 24-299 (329)
182 COG1219 ClpX ATP-dependent pro 99.4 7.7E-12 1.7E-16 121.5 16.5 221 239-470 61-363 (408)
183 PHA02244 ATPase-like protein 99.4 3.8E-12 8.3E-17 128.6 14.9 123 270-404 121-266 (383)
184 COG1220 HslU ATP-dependent pro 99.4 6.1E-12 1.3E-16 123.1 15.6 156 329-495 252-434 (444)
185 COG0470 HolB ATPase involved i 99.4 5E-12 1.1E-16 128.6 15.5 150 240-409 2-178 (325)
186 TIGR00764 lon_rel lon-related 99.4 2.9E-11 6.3E-16 132.2 22.2 143 328-498 218-395 (608)
187 smart00350 MCM minichromosome 99.4 8.7E-12 1.9E-16 134.3 17.9 247 238-495 202-505 (509)
188 TIGR00368 Mg chelatase-related 99.4 1E-11 2.2E-16 132.4 17.7 230 236-493 189-498 (499)
189 PRK15429 formate hydrogenlyase 99.4 1.6E-11 3.5E-16 137.3 20.2 205 235-472 372-607 (686)
190 KOG2680 DNA helicase TIP49, TB 99.4 4.6E-11 1E-15 115.1 19.8 135 328-500 289-435 (454)
191 COG1221 PspF Transcriptional r 99.4 3.9E-12 8.5E-17 130.1 13.3 205 234-475 73-310 (403)
192 COG0606 Predicted ATPase with 99.4 8.2E-12 1.8E-16 128.3 15.2 235 235-494 175-485 (490)
193 TIGR02031 BchD-ChlD magnesium 99.4 1.9E-11 4.1E-16 133.5 18.4 222 268-499 16-263 (589)
194 COG2607 Predicted ATPase (AAA+ 99.4 4.9E-11 1.1E-15 112.0 17.6 166 232-418 53-245 (287)
195 PRK06871 DNA polymerase III su 99.3 7.3E-11 1.6E-15 119.1 19.7 131 265-411 21-178 (325)
196 PRK10923 glnG nitrogen regulat 99.3 2E-11 4.3E-16 130.9 16.6 301 119-488 46-382 (469)
197 PF13177 DNA_pol3_delta2: DNA 99.3 1.3E-11 2.8E-16 112.9 13.0 136 243-400 1-162 (162)
198 PRK11361 acetoacetate metaboli 99.3 3.3E-11 7.1E-16 128.7 17.7 270 158-488 82-387 (457)
199 KOG0990 Replication factor C, 99.3 1.2E-11 2.5E-16 120.6 12.3 194 231-475 33-238 (360)
200 PRK07993 DNA polymerase III su 99.3 6E-11 1.3E-15 120.8 18.2 131 265-410 21-178 (334)
201 PRK15115 response regulator Gl 99.3 9.5E-11 2.1E-15 124.7 19.6 300 119-489 48-379 (444)
202 COG0542 clpA ATP-binding subun 99.3 1.7E-10 3.6E-15 126.4 21.4 188 235-457 166-371 (786)
203 PRK08769 DNA polymerase III su 99.3 1.3E-10 2.9E-15 117.0 18.2 133 265-410 23-183 (319)
204 PF07728 AAA_5: AAA domain (dy 99.3 1E-11 2.2E-16 110.5 8.8 110 270-390 1-139 (139)
205 KOG1969 DNA replication checkp 99.3 1.2E-10 2.5E-15 124.1 17.8 206 232-477 264-518 (877)
206 KOG0745 Putative ATP-dependent 99.3 1.2E-10 2.7E-15 117.3 16.3 191 270-471 228-505 (564)
207 PRK09862 putative ATP-dependen 99.3 8.4E-11 1.8E-15 124.9 15.9 233 236-494 188-492 (506)
208 PF01078 Mg_chelatase: Magnesi 99.3 1.3E-12 2.8E-17 122.1 1.7 142 237-403 1-206 (206)
209 TIGR01818 ntrC nitrogen regula 99.3 1.1E-10 2.4E-15 124.8 16.5 306 119-491 41-381 (463)
210 PRK06964 DNA polymerase III su 99.2 8.1E-11 1.8E-15 119.6 13.7 133 265-410 18-202 (342)
211 PRK06090 DNA polymerase III su 99.2 2.7E-10 5.7E-15 114.8 16.7 132 264-410 21-178 (319)
212 COG0464 SpoVK ATPases of the A 99.2 2.6E-10 5.7E-15 123.0 17.8 203 265-496 15-228 (494)
213 PF00158 Sigma54_activat: Sigm 99.2 1.7E-10 3.8E-15 106.0 13.3 129 241-390 1-162 (168)
214 PRK11331 5-methylcytosine-spec 99.2 1.8E-10 3.8E-15 119.6 14.4 142 238-401 174-361 (459)
215 PTZ00111 DNA replication licen 99.2 9.1E-10 2E-14 122.4 20.9 216 270-497 494-807 (915)
216 KOG1514 Origin recognition com 99.2 6E-10 1.3E-14 118.5 18.6 223 239-498 396-659 (767)
217 PRK08116 hypothetical protein; 99.2 6.9E-11 1.5E-15 116.9 10.7 164 235-412 81-260 (268)
218 smart00382 AAA ATPases associa 99.2 2.5E-10 5.4E-15 99.9 12.2 122 269-399 3-147 (148)
219 COG3283 TyrR Transcriptional r 99.2 4.8E-10 1E-14 110.6 14.8 210 232-474 197-432 (511)
220 PRK12377 putative replication 99.1 3.3E-10 7.2E-15 110.3 10.9 152 234-400 69-236 (248)
221 PRK13765 ATP-dependent proteas 99.1 1.8E-09 3.8E-14 118.0 17.5 138 328-493 227-399 (637)
222 COG1239 ChlI Mg-chelatase subu 99.1 4.3E-09 9.3E-14 107.1 18.6 248 237-507 15-335 (423)
223 KOG0741 AAA+-type ATPase [Post 99.1 2.3E-09 5E-14 110.5 15.7 144 266-410 536-684 (744)
224 PRK10365 transcriptional regul 99.1 2.5E-09 5.4E-14 113.7 16.7 304 119-488 48-383 (441)
225 PRK08699 DNA polymerase III su 99.1 1.4E-09 3.1E-14 110.3 13.1 132 266-410 19-183 (325)
226 PF07726 AAA_3: ATPase family 99.0 1.7E-11 3.7E-16 105.5 -1.5 112 270-390 1-129 (131)
227 PRK07952 DNA replication prote 99.0 1.1E-09 2.3E-14 106.5 10.3 152 234-400 67-235 (244)
228 smart00763 AAA_PrkA PrkA AAA d 99.0 5.8E-09 1.3E-13 105.7 15.2 62 238-301 49-118 (361)
229 KOG0478 DNA replication licens 99.0 1.5E-08 3.2E-13 107.5 17.6 217 270-498 464-728 (804)
230 KOG2227 Pre-initiation complex 99.0 1E-08 2.3E-13 104.8 15.4 227 238-501 149-422 (529)
231 PF03215 Rad17: Rad17 cell cyc 99.0 2.3E-08 5E-13 107.2 18.9 212 232-475 12-269 (519)
232 PRK05818 DNA polymerase III su 99.0 2.9E-08 6.3E-13 96.3 17.4 116 267-399 6-147 (261)
233 PRK05917 DNA polymerase III su 99.0 1.3E-08 2.7E-13 100.8 15.3 121 265-400 16-155 (290)
234 PF14532 Sigma54_activ_2: Sigm 99.0 1.2E-09 2.5E-14 97.3 6.7 126 242-398 1-137 (138)
235 PRK07132 DNA polymerase III su 99.0 3.3E-08 7.2E-13 98.9 17.7 130 264-410 14-160 (299)
236 COG1241 MCM2 Predicted ATPase 99.0 1.2E-08 2.6E-13 111.0 15.4 220 270-499 321-597 (682)
237 KOG0480 DNA replication licens 98.9 4.9E-08 1.1E-12 102.9 17.4 250 238-498 344-647 (764)
238 PF12775 AAA_7: P-loop contain 98.9 1.8E-08 4E-13 99.8 13.5 216 237-475 8-256 (272)
239 PF01637 Arch_ATPase: Archaeal 98.9 3.2E-08 6.9E-13 95.1 14.8 186 242-465 2-233 (234)
240 PRK13406 bchD magnesium chelat 98.9 1.3E-08 2.8E-13 110.6 13.2 201 268-501 25-257 (584)
241 PRK08939 primosomal protein Dn 98.9 9.4E-09 2E-13 103.5 9.8 132 235-379 123-261 (306)
242 PRK07276 DNA polymerase III su 98.9 1.7E-07 3.7E-12 93.1 18.5 130 264-409 20-172 (290)
243 PRK08181 transposase; Validate 98.8 3E-09 6.4E-14 104.9 5.1 121 269-402 107-245 (269)
244 PRK06835 DNA replication prote 98.8 1.7E-08 3.6E-13 102.5 10.1 111 269-391 184-306 (329)
245 COG3267 ExeA Type II secretory 98.8 2.4E-07 5.3E-12 88.4 17.0 188 270-488 53-267 (269)
246 PF13173 AAA_14: AAA domain 98.8 1.7E-08 3.6E-13 88.6 7.8 118 270-404 4-127 (128)
247 PRK06921 hypothetical protein; 98.8 3.8E-08 8.2E-13 97.3 10.5 115 268-390 117-240 (266)
248 COG1484 DnaC DNA replication p 98.8 3E-08 6.5E-13 97.3 9.7 126 239-379 79-209 (254)
249 PRK06526 transposase; Provisio 98.7 1.3E-08 2.8E-13 99.8 5.9 100 269-379 99-201 (254)
250 KOG1970 Checkpoint RAD17-RFC c 98.7 1E-06 2.2E-11 92.1 19.7 213 231-474 74-320 (634)
251 PF01695 IstB_IS21: IstB-like 98.7 4E-09 8.6E-14 98.0 1.9 110 269-391 48-172 (178)
252 PF12774 AAA_6: Hydrolytic ATP 98.7 3.9E-07 8.6E-12 87.9 15.0 147 239-409 10-177 (231)
253 PF00493 MCM: MCM2/3/5 family 98.7 2.5E-08 5.5E-13 101.8 7.0 242 239-495 24-327 (331)
254 COG3284 AcoR Transcriptional a 98.7 1.2E-07 2.6E-12 100.8 12.2 178 270-475 338-541 (606)
255 KOG2170 ATPase of the AAA+ sup 98.7 4.1E-07 8.8E-12 88.6 14.6 166 239-415 82-303 (344)
256 TIGR02688 conserved hypothetic 98.6 2.5E-06 5.5E-11 87.9 18.2 195 269-499 210-438 (449)
257 PF13401 AAA_22: AAA domain; P 98.6 1.5E-07 3.3E-12 82.3 7.7 71 269-340 5-100 (131)
258 cd01120 RecA-like_NTPases RecA 98.5 1.4E-06 3.1E-11 78.5 12.4 107 271-379 2-137 (165)
259 PRK09183 transposase/IS protei 98.5 2.2E-07 4.7E-12 91.6 7.4 99 269-379 103-206 (259)
260 PF05729 NACHT: NACHT domain 98.5 6.7E-07 1.5E-11 81.1 10.1 140 270-414 2-165 (166)
261 KOG0481 DNA replication licens 98.5 2.2E-06 4.7E-11 88.6 13.7 249 239-498 331-643 (729)
262 COG5271 MDN1 AAA ATPase contai 98.5 2.7E-06 5.9E-11 97.3 15.3 132 270-414 1545-1705(4600)
263 COG5271 MDN1 AAA ATPase contai 98.4 2.1E-06 4.6E-11 98.1 13.3 157 239-413 865-1048(4600)
264 COG4650 RtcR Sigma54-dependent 98.4 7.7E-07 1.7E-11 86.1 8.6 206 270-499 210-448 (531)
265 PF00931 NB-ARC: NB-ARC domain 98.4 6.4E-06 1.4E-10 82.2 14.7 165 266-470 17-206 (287)
266 PHA00729 NTP-binding motif con 98.4 1E-06 2.2E-11 84.1 8.2 25 269-293 18-42 (226)
267 PLN03210 Resistant to P. syrin 98.4 1.1E-05 2.4E-10 95.7 18.8 152 236-413 181-365 (1153)
268 PF03969 AFG1_ATPase: AFG1-lik 98.3 1.1E-06 2.5E-11 90.3 7.9 99 265-379 59-168 (362)
269 KOG0482 DNA replication licens 98.3 4.1E-06 8.9E-11 86.5 10.4 241 239-494 342-638 (721)
270 PRK06581 DNA polymerase III su 98.3 3.1E-05 6.7E-10 74.0 15.2 134 268-414 15-163 (263)
271 KOG0477 DNA replication licens 98.2 7.5E-06 1.6E-10 86.5 11.2 216 270-498 484-761 (854)
272 COG5245 DYN1 Dynein, heavy cha 98.2 2.6E-05 5.7E-10 89.0 15.2 200 269-477 1495-1719(3164)
273 PF00910 RNA_helicase: RNA hel 98.2 1.9E-06 4.1E-11 73.1 4.9 23 271-293 1-23 (107)
274 KOG1968 Replication factor C, 98.2 4.7E-06 1E-10 93.8 8.5 163 271-473 360-535 (871)
275 PF13191 AAA_16: AAA ATPase do 98.1 2.1E-06 4.5E-11 79.6 4.6 58 241-303 2-62 (185)
276 KOG2228 Origin recognition com 98.1 2.8E-05 6.1E-10 77.1 12.6 162 239-412 24-219 (408)
277 PF06309 Torsin: Torsin; Inte 98.1 1.5E-05 3.3E-10 68.7 9.4 53 239-292 25-77 (127)
278 TIGR01618 phage_P_loop phage n 98.1 8.5E-06 1.9E-10 77.9 8.6 104 269-374 13-140 (220)
279 COG1618 Predicted nucleotide k 98.1 5.9E-05 1.3E-09 67.4 12.9 23 270-292 7-29 (179)
280 PRK04841 transcriptional regul 98.1 0.00019 4.1E-09 83.3 21.0 183 234-467 9-226 (903)
281 PHA02774 E1; Provisional 98.1 2.7E-05 5.8E-10 83.2 12.4 107 269-399 435-555 (613)
282 KOG2543 Origin recognition com 98.1 3.5E-05 7.5E-10 77.6 12.4 160 239-411 6-192 (438)
283 PF07693 KAP_NTPase: KAP famil 98.1 0.00065 1.4E-08 69.1 21.9 133 326-473 171-321 (325)
284 PRK05800 cobU adenosylcobinami 98.0 7.2E-05 1.6E-09 68.9 12.0 105 270-378 3-125 (170)
285 KOG1051 Chaperone HSP104 and r 98.0 5.7E-05 1.2E-09 84.7 12.1 166 238-418 185-369 (898)
286 COG1485 Predicted ATPase [Gene 98.0 0.00011 2.4E-09 73.6 12.8 98 265-378 62-170 (367)
287 PF13207 AAA_17: AAA domain; P 98.0 7.2E-06 1.6E-10 70.7 3.9 31 271-301 2-32 (121)
288 cd01124 KaiC KaiC is a circadi 97.9 0.00011 2.3E-09 68.4 11.6 32 270-301 1-35 (187)
289 PF10236 DAP3: Mitochondrial r 97.9 0.0012 2.5E-08 67.0 19.7 129 315-465 142-308 (309)
290 PF12780 AAA_8: P-loop contain 97.9 0.00041 8.9E-09 68.6 15.9 165 239-415 8-213 (268)
291 PRK15455 PrkA family serine pr 97.9 2E-05 4.4E-10 84.1 7.0 63 237-301 74-137 (644)
292 PF05707 Zot: Zonular occluden 97.9 1.9E-05 4E-10 74.4 5.7 122 271-399 3-146 (193)
293 cd00544 CobU Adenosylcobinamid 97.8 0.00016 3.5E-09 66.5 11.2 104 271-378 2-125 (169)
294 PF14516 AAA_35: AAA-like doma 97.8 0.0014 3E-08 67.1 19.1 164 267-467 30-240 (331)
295 COG1373 Predicted ATPase (AAA+ 97.8 0.00012 2.5E-09 76.7 11.4 121 270-407 39-162 (398)
296 PRK12723 flagellar biosynthesi 97.8 0.00011 2.4E-09 76.2 10.3 134 268-413 174-336 (388)
297 KOG0479 DNA replication licens 97.8 0.0011 2.4E-08 70.1 17.2 243 240-495 302-643 (818)
298 PRK04296 thymidine kinase; Pro 97.8 0.00016 3.4E-09 68.0 10.3 70 270-339 4-90 (190)
299 PTZ00202 tuzin; Provisional 97.8 0.002 4.3E-08 67.0 18.6 61 237-302 260-320 (550)
300 PRK07261 topology modulation p 97.8 0.00011 2.5E-09 67.7 9.0 102 270-414 2-103 (171)
301 KOG3928 Mitochondrial ribosome 97.8 0.0013 2.9E-08 67.0 17.1 118 328-468 316-458 (461)
302 PHA02624 large T antigen; Prov 97.8 9.7E-05 2.1E-09 79.4 9.2 35 269-303 432-466 (647)
303 PRK00131 aroK shikimate kinase 97.7 3.1E-05 6.7E-10 71.1 4.5 32 268-299 4-35 (175)
304 PRK08118 topology modulation p 97.7 2.8E-05 6.1E-10 71.5 4.1 102 270-415 3-104 (167)
305 PRK14722 flhF flagellar biosyn 97.7 0.0002 4.3E-09 73.8 10.3 35 269-303 138-177 (374)
306 PF03266 NTPase_1: NTPase; In 97.7 1.7E-05 3.7E-10 72.9 2.1 23 270-292 1-23 (168)
307 KOG2383 Predicted ATPase [Gene 97.7 8.8E-05 1.9E-09 75.2 6.9 27 265-291 111-137 (467)
308 PF00448 SRP54: SRP54-type pro 97.7 0.0005 1.1E-08 64.9 11.6 101 268-378 1-125 (196)
309 PF13604 AAA_30: AAA domain; P 97.7 0.00048 1E-08 65.0 11.4 91 270-378 20-132 (196)
310 PF13479 AAA_24: AAA domain 97.6 0.00025 5.5E-09 67.8 9.4 102 270-375 5-135 (213)
311 TIGR02237 recomb_radB DNA repa 97.6 0.00036 7.8E-09 66.3 10.3 40 264-303 7-50 (209)
312 KOG3347 Predicted nucleotide k 97.6 4.6E-05 9.9E-10 67.0 3.6 31 270-300 9-39 (176)
313 PF05272 VirE: Virulence-assoc 97.6 0.00039 8.5E-09 65.6 10.2 104 269-398 53-169 (198)
314 PF04665 Pox_A32: Poxvirus A32 97.6 0.0017 3.6E-08 62.9 14.6 131 269-412 14-170 (241)
315 COG4088 Predicted nucleotide k 97.6 0.00041 8.8E-09 64.5 9.7 24 270-293 3-26 (261)
316 PRK08233 hypothetical protein; 97.6 0.00036 7.9E-09 64.5 9.6 32 270-301 5-37 (182)
317 PRK13947 shikimate kinase; Pro 97.6 6.4E-05 1.4E-09 69.0 4.3 31 270-300 3-33 (171)
318 cd01121 Sms Sms (bacterial rad 97.6 0.0004 8.6E-09 71.9 10.3 95 269-364 83-197 (372)
319 COG2804 PulE Type II secretory 97.6 0.00038 8.2E-09 73.2 10.1 90 235-338 234-338 (500)
320 cd00561 CobA_CobO_BtuR ATP:cor 97.6 0.0011 2.3E-08 60.2 11.6 115 270-396 4-152 (159)
321 PRK11823 DNA repair protein Ra 97.6 0.00042 9.2E-09 73.6 10.5 94 269-363 81-194 (446)
322 PRK05973 replicative DNA helic 97.5 0.00086 1.9E-08 64.9 11.6 33 269-301 65-100 (237)
323 PRK14528 adenylate kinase; Pro 97.5 0.00062 1.4E-08 63.7 10.3 31 269-299 2-32 (186)
324 PRK14531 adenylate kinase; Pro 97.5 0.00072 1.6E-08 63.0 10.5 30 270-299 4-33 (183)
325 PRK04040 adenylate kinase; Pro 97.5 0.0005 1.1E-08 64.4 9.3 26 268-293 2-27 (188)
326 PRK06762 hypothetical protein; 97.5 0.0004 8.6E-09 63.5 8.5 33 269-301 3-35 (166)
327 PRK00625 shikimate kinase; Pro 97.5 8.6E-05 1.9E-09 68.6 4.1 31 270-300 2-32 (173)
328 cd03281 ABC_MSH5_euk MutS5 hom 97.5 0.00074 1.6E-08 64.6 10.6 107 269-382 30-157 (213)
329 PRK03839 putative kinase; Prov 97.5 8.5E-05 1.8E-09 69.0 3.9 31 270-300 2-32 (180)
330 PRK08485 DNA polymerase III su 97.5 0.0057 1.2E-07 57.1 15.8 86 313-410 40-137 (206)
331 PRK13695 putative NTPase; Prov 97.5 0.0014 3.1E-08 60.4 12.1 23 270-292 2-24 (174)
332 PRK14974 cell division protein 97.5 0.0025 5.5E-08 65.0 14.8 34 268-301 140-176 (336)
333 COG2909 MalT ATP-dependent tra 97.5 0.0023 5E-08 70.8 15.2 173 238-459 18-227 (894)
334 COG0563 Adk Adenylate kinase a 97.5 0.00013 2.9E-09 67.6 5.0 33 270-304 2-34 (178)
335 cd00464 SK Shikimate kinase (S 97.5 0.00011 2.3E-09 66.1 4.2 31 270-300 1-31 (154)
336 PRK09361 radB DNA repair and r 97.5 0.0008 1.7E-08 64.8 10.5 39 264-302 18-60 (225)
337 cd00983 recA RecA is a bacter 97.5 0.00087 1.9E-08 67.8 11.0 79 264-342 50-148 (325)
338 PRK10536 hypothetical protein; 97.5 0.0008 1.7E-08 65.5 10.2 22 270-291 76-97 (262)
339 COG4619 ABC-type uncharacteriz 97.5 0.0016 3.5E-08 58.8 11.2 24 269-292 30-53 (223)
340 PF13671 AAA_33: AAA domain; P 97.5 0.00012 2.7E-09 64.8 4.3 23 271-293 2-24 (143)
341 PF06745 KaiC: KaiC; InterPro 97.5 0.00089 1.9E-08 64.5 10.5 102 269-377 20-159 (226)
342 cd02027 APSK Adenosine 5'-phos 97.5 0.00057 1.2E-08 61.5 8.5 31 271-301 2-35 (149)
343 TIGR03574 selen_PSTK L-seryl-t 97.4 0.00052 1.1E-08 67.3 8.9 34 271-304 2-38 (249)
344 PRK13949 shikimate kinase; Pro 97.4 0.00012 2.6E-09 67.4 4.0 32 269-300 2-33 (169)
345 PRK08533 flagellar accessory p 97.4 0.0019 4E-08 62.6 12.4 33 269-301 25-60 (230)
346 PRK11889 flhF flagellar biosyn 97.4 0.0011 2.5E-08 68.2 11.3 35 268-302 241-278 (436)
347 cd01131 PilT Pilus retraction 97.4 0.00069 1.5E-08 64.0 9.1 24 270-293 3-26 (198)
348 PRK14700 recombination factor 97.4 0.0021 4.5E-08 63.7 12.4 107 366-495 5-116 (300)
349 PF01745 IPT: Isopentenyl tran 97.4 0.00032 6.9E-09 65.8 6.3 136 270-418 3-145 (233)
350 PRK14532 adenylate kinase; Pro 97.4 0.00013 2.9E-09 68.2 3.9 29 270-298 2-30 (188)
351 TIGR03499 FlhF flagellar biosy 97.4 0.00047 1E-08 68.9 8.1 36 268-303 194-234 (282)
352 cd00046 DEXDc DEAD-like helica 97.4 0.00054 1.2E-08 59.2 7.6 23 270-292 2-24 (144)
353 cd01128 rho_factor Transcripti 97.4 0.00051 1.1E-08 67.2 8.0 25 270-294 18-42 (249)
354 cd03283 ABC_MutS-like MutS-lik 97.4 0.001 2.2E-08 62.9 9.9 23 269-291 26-48 (199)
355 TIGR01359 UMP_CMP_kin_fam UMP- 97.4 0.00014 3.1E-09 67.5 4.0 32 271-304 2-33 (183)
356 TIGR02012 tigrfam_recA protein 97.4 0.00083 1.8E-08 67.9 9.7 79 264-342 50-148 (321)
357 PRK05703 flhF flagellar biosyn 97.4 0.0084 1.8E-07 63.4 17.6 35 269-303 222-261 (424)
358 PRK09376 rho transcription ter 97.4 0.0015 3.3E-08 67.2 11.5 24 270-293 171-194 (416)
359 COG1102 Cmk Cytidylate kinase 97.4 0.00015 3.3E-09 64.8 3.7 28 271-298 3-30 (179)
360 COG0529 CysC Adenylylsulfate k 97.4 0.00079 1.7E-08 61.2 8.2 39 266-304 21-62 (197)
361 PRK00771 signal recognition pa 97.4 0.0021 4.6E-08 67.8 12.8 38 267-304 94-134 (437)
362 cd00227 CPT Chloramphenicol (C 97.4 0.00014 3E-09 67.3 3.5 33 269-301 3-35 (175)
363 PRK06217 hypothetical protein; 97.4 0.00018 3.8E-09 67.1 4.2 31 270-300 3-33 (183)
364 PF00437 T2SE: Type II/IV secr 97.4 0.00022 4.9E-09 70.7 5.1 98 234-338 99-208 (270)
365 PRK13948 shikimate kinase; Pro 97.3 0.00022 4.8E-09 66.4 4.6 34 267-300 9-42 (182)
366 COG3854 SpoIIIAA ncharacterize 97.3 0.0011 2.4E-08 62.7 9.0 23 270-292 139-161 (308)
367 TIGR02858 spore_III_AA stage I 97.3 0.0011 2.4E-08 65.6 9.7 25 269-293 112-136 (270)
368 PRK08154 anaerobic benzoate ca 97.3 0.00038 8.1E-09 70.6 6.5 56 245-300 110-165 (309)
369 smart00534 MUTSac ATPase domai 97.3 0.0029 6.2E-08 59.1 12.0 101 271-379 2-122 (185)
370 cd02020 CMPK Cytidine monophos 97.3 0.0002 4.3E-09 63.7 3.9 30 271-300 2-31 (147)
371 PRK14527 adenylate kinase; Pro 97.3 0.001 2.2E-08 62.4 8.9 30 269-298 7-36 (191)
372 PRK12724 flagellar biosynthesi 97.3 0.036 7.9E-07 57.9 20.7 35 269-303 224-262 (432)
373 COG0703 AroK Shikimate kinase 97.3 0.0002 4.4E-09 65.3 3.7 32 269-300 3-34 (172)
374 cd01129 PulE-GspE PulE/GspE Th 97.3 0.00086 1.9E-08 66.3 8.3 92 237-338 58-160 (264)
375 PRK06067 flagellar accessory p 97.3 0.0027 5.8E-08 61.6 11.7 37 265-301 21-61 (234)
376 COG1936 Predicted nucleotide k 97.3 0.00018 3.9E-09 65.1 3.0 30 270-300 2-31 (180)
377 PRK14530 adenylate kinase; Pro 97.3 0.00024 5.2E-09 68.0 4.1 30 270-299 5-34 (215)
378 PRK06547 hypothetical protein; 97.3 0.00027 5.8E-09 65.3 4.3 35 266-300 13-47 (172)
379 cd02021 GntK Gluconate kinase 97.3 0.00023 5E-09 63.8 3.7 27 271-297 2-28 (150)
380 PF08303 tRNA_lig_kinase: tRNA 97.3 0.0099 2.1E-07 53.7 13.9 131 274-418 5-149 (168)
381 TIGR01313 therm_gnt_kin carboh 97.3 0.00023 4.9E-09 64.9 3.5 32 271-304 1-32 (163)
382 PF10923 DUF2791: P-loop Domai 97.3 0.068 1.5E-06 55.9 22.1 50 237-291 22-72 (416)
383 CHL00195 ycf46 Ycf46; Provisio 97.3 0.025 5.4E-07 60.8 19.4 140 319-498 71-212 (489)
384 cd01428 ADK Adenylate kinase ( 97.2 0.00026 5.6E-09 66.3 3.9 29 271-299 2-30 (194)
385 PF01583 APS_kinase: Adenylyls 97.2 0.00075 1.6E-08 61.0 6.7 36 269-304 3-41 (156)
386 KOG1808 AAA ATPase containing 97.2 0.00048 1E-08 82.2 6.8 151 241-410 419-597 (1856)
387 PRK05986 cob(I)alamin adenolsy 97.2 0.0049 1.1E-07 57.4 12.2 117 269-397 23-173 (191)
388 cd00267 ABC_ATPase ABC (ATP-bi 97.2 0.003 6.5E-08 57.1 10.3 97 269-378 26-139 (157)
389 PRK06696 uridine kinase; Valid 97.2 0.00076 1.6E-08 65.0 6.7 38 268-305 22-62 (223)
390 cd03216 ABC_Carb_Monos_I This 97.2 0.0034 7.4E-08 57.3 10.7 101 267-378 25-141 (163)
391 PF13245 AAA_19: Part of AAA d 97.2 0.00059 1.3E-08 54.0 4.8 23 270-292 12-35 (76)
392 PRK03731 aroL shikimate kinase 97.2 0.00039 8.4E-09 63.9 4.3 31 270-300 4-34 (171)
393 PTZ00088 adenylate kinase 1; P 97.2 0.00036 7.7E-09 67.5 4.2 31 270-300 8-38 (229)
394 PRK13946 shikimate kinase; Pro 97.2 0.00034 7.4E-09 65.3 3.9 32 269-300 11-42 (184)
395 cd03115 SRP The signal recogni 97.2 0.0053 1.1E-07 56.4 11.8 34 270-303 2-38 (173)
396 PF05970 PIF1: PIF1-like helic 97.2 0.0013 2.8E-08 68.2 8.6 26 268-293 22-47 (364)
397 PF09848 DUF2075: Uncharacteri 97.2 0.002 4.3E-08 66.6 9.8 23 270-292 3-25 (352)
398 TIGR00064 ftsY signal recognit 97.2 0.0055 1.2E-07 60.9 12.5 37 266-302 70-109 (272)
399 PRK03846 adenylylsulfate kinas 97.2 0.0039 8.5E-08 58.8 11.0 37 266-302 22-61 (198)
400 PRK05057 aroK shikimate kinase 97.2 0.00042 9.2E-09 63.9 4.2 33 269-301 5-37 (172)
401 cd01130 VirB11-like_ATPase Typ 97.1 0.00081 1.8E-08 62.8 6.1 69 269-338 26-111 (186)
402 cd03243 ABC_MutS_homologs The 97.1 0.0038 8.2E-08 59.1 10.7 21 269-289 30-50 (202)
403 cd00984 DnaB_C DnaB helicase C 97.1 0.004 8.6E-08 60.5 11.1 33 269-301 14-50 (242)
404 PLN02200 adenylate kinase fami 97.1 0.00045 9.7E-09 67.1 4.3 35 268-304 43-77 (234)
405 cd02022 DPCK Dephospho-coenzym 97.1 0.0015 3.2E-08 60.7 7.6 28 271-299 2-29 (179)
406 PRK02496 adk adenylate kinase; 97.1 0.0004 8.8E-09 64.6 3.9 30 270-299 3-32 (184)
407 TIGR01420 pilT_fam pilus retra 97.1 0.00074 1.6E-08 69.5 6.1 68 269-337 123-205 (343)
408 PF08433 KTI12: Chromatin asso 97.1 0.0039 8.5E-08 61.7 11.0 82 270-363 3-96 (270)
409 cd02019 NK Nucleoside/nucleoti 97.1 0.00074 1.6E-08 52.3 4.7 29 271-299 2-31 (69)
410 TIGR00708 cobA cob(I)alamin ad 97.1 0.0091 2E-07 54.9 12.4 116 270-397 7-155 (173)
411 TIGR01360 aden_kin_iso1 adenyl 97.1 0.00048 1E-08 64.1 4.2 29 270-298 5-33 (188)
412 TIGR03877 thermo_KaiC_1 KaiC d 97.1 0.0058 1.3E-07 59.4 11.8 37 264-300 16-56 (237)
413 PF13238 AAA_18: AAA domain; P 97.1 0.0004 8.7E-09 60.0 3.2 22 271-292 1-22 (129)
414 TIGR02782 TrbB_P P-type conjug 97.1 0.0014 3E-08 66.1 7.4 69 269-338 133-215 (299)
415 PRK10416 signal recognition pa 97.1 0.041 8.8E-07 55.9 18.1 35 267-301 113-150 (318)
416 PRK13833 conjugal transfer pro 97.1 0.00065 1.4E-08 68.8 5.0 69 269-338 145-226 (323)
417 TIGR01351 adk adenylate kinase 97.1 0.00048 1E-08 65.7 3.9 29 271-299 2-30 (210)
418 cd03287 ABC_MSH3_euk MutS3 hom 97.1 0.0054 1.2E-07 59.0 11.1 22 269-290 32-53 (222)
419 cd03280 ABC_MutS2 MutS2 homolo 97.1 0.0051 1.1E-07 58.1 10.8 20 270-289 30-49 (200)
420 TIGR03878 thermo_KaiC_2 KaiC d 97.1 0.0052 1.1E-07 60.6 11.3 34 269-302 37-73 (259)
421 PRK13808 adenylate kinase; Pro 97.1 0.0033 7.1E-08 63.8 9.8 30 270-299 2-31 (333)
422 PF10443 RNA12: RNA12 protein; 97.1 0.027 5.8E-07 58.6 16.6 81 329-415 150-232 (431)
423 smart00487 DEXDc DEAD-like hel 97.1 0.0025 5.4E-08 58.7 8.5 24 269-292 25-49 (201)
424 COG2874 FlaH Predicted ATPases 97.1 0.0043 9.2E-08 58.3 9.7 117 264-390 23-178 (235)
425 PRK09354 recA recombinase A; P 97.1 0.0032 7E-08 64.3 9.8 79 264-342 55-153 (349)
426 cd03222 ABC_RNaseL_inhibitor T 97.0 0.0058 1.3E-07 56.6 10.7 99 269-378 26-131 (177)
427 cd03238 ABC_UvrA The excision 97.0 0.014 3.1E-07 54.0 13.3 22 269-290 22-43 (176)
428 PRK00279 adk adenylate kinase; 97.0 0.00057 1.2E-08 65.4 4.0 29 270-298 2-30 (215)
429 PRK13900 type IV secretion sys 97.0 0.002 4.4E-08 65.7 8.2 69 269-338 161-246 (332)
430 PRK14730 coaE dephospho-CoA ki 97.0 0.0016 3.4E-08 61.4 6.9 29 270-298 3-31 (195)
431 cd01853 Toc34_like Toc34-like 97.0 0.009 1.9E-07 58.5 12.3 26 266-291 29-54 (249)
432 TIGR01425 SRP54_euk signal rec 97.0 0.0061 1.3E-07 64.0 11.7 37 267-303 99-138 (429)
433 PRK14529 adenylate kinase; Pro 97.0 0.0043 9.3E-08 59.6 9.8 28 270-297 2-29 (223)
434 cd01123 Rad51_DMC1_radA Rad51_ 97.0 0.0048 1E-07 59.7 10.4 35 269-303 20-63 (235)
435 PF01926 MMR_HSR1: 50S ribosom 97.0 0.0031 6.7E-08 53.8 8.0 21 271-291 2-22 (116)
436 cd03221 ABCF_EF-3 ABCF_EF-3 E 97.0 0.0071 1.5E-07 54.0 10.6 95 269-379 27-127 (144)
437 cd01393 recA_like RecA is a b 97.0 0.0043 9.3E-08 59.6 9.9 35 269-303 20-63 (226)
438 PRK10867 signal recognition pa 97.0 0.0095 2.1E-07 62.8 13.0 39 266-304 98-140 (433)
439 PRK13764 ATPase; Provisional 97.0 0.00099 2.1E-08 72.7 5.8 25 269-293 258-282 (602)
440 TIGR02653 Lon_rel_chp conserve 97.0 0.0048 1E-07 67.1 10.8 189 270-500 218-446 (675)
441 PRK10436 hypothetical protein; 97.0 0.005 1.1E-07 65.6 10.9 93 236-338 195-298 (462)
442 PRK12727 flagellar biosynthesi 97.0 0.0061 1.3E-07 65.3 11.4 24 269-292 351-374 (559)
443 TIGR03880 KaiC_arch_3 KaiC dom 97.0 0.0069 1.5E-07 58.2 11.0 38 265-302 12-53 (224)
444 PF00519 PPV_E1_C: Papillomavi 97.0 0.0061 1.3E-07 62.2 10.8 31 269-299 263-293 (432)
445 TIGR00416 sms DNA repair prote 97.0 0.0046 9.9E-08 65.9 10.5 76 265-341 90-184 (454)
446 TIGR02525 plasmid_TraJ plasmid 97.0 0.0032 6.9E-08 65.2 8.9 68 269-338 150-236 (372)
447 TIGR00150 HI0065_YjeE ATPase, 96.9 0.0015 3.2E-08 57.5 5.4 27 269-295 23-49 (133)
448 PRK13894 conjugal transfer ATP 96.9 0.00081 1.7E-08 68.3 4.4 69 269-338 149-230 (319)
449 TIGR00767 rho transcription te 96.9 0.0026 5.6E-08 65.8 7.9 25 269-293 169-193 (415)
450 TIGR02533 type_II_gspE general 96.9 0.0038 8.3E-08 67.0 9.6 94 235-338 218-322 (486)
451 cd01122 GP4d_helicase GP4d_hel 96.9 0.0061 1.3E-07 60.3 10.4 33 269-301 31-67 (271)
452 TIGR02524 dot_icm_DotB Dot/Icm 96.9 0.0048 1E-07 63.7 9.8 24 269-292 135-158 (358)
453 PRK00081 coaE dephospho-CoA ki 96.9 0.0021 4.6E-08 60.5 6.6 32 270-304 4-35 (194)
454 cd03230 ABC_DR_subfamily_A Thi 96.9 0.012 2.5E-07 54.3 11.5 24 269-292 27-50 (173)
455 PF02562 PhoH: PhoH-like prote 96.9 0.0012 2.7E-08 62.4 4.9 23 270-292 21-43 (205)
456 cd03227 ABC_Class2 ABC-type Cl 96.9 0.0071 1.5E-07 55.1 9.9 22 269-290 22-43 (162)
457 PF13337 Lon_2: Putative ATP-d 96.9 0.0084 1.8E-07 62.7 11.4 194 269-501 209-438 (457)
458 PF06414 Zeta_toxin: Zeta toxi 96.9 0.0019 4.1E-08 61.1 6.2 40 267-306 14-54 (199)
459 PRK12608 transcription termina 96.9 0.003 6.5E-08 64.9 7.9 24 270-293 135-158 (380)
460 cd01878 HflX HflX subfamily. 96.9 0.026 5.6E-07 53.2 14.0 23 269-291 42-64 (204)
461 cd01394 radB RadB. The archaea 96.9 0.008 1.7E-07 57.5 10.6 34 269-302 20-56 (218)
462 PRK04182 cytidylate kinase; Pr 96.9 0.00093 2E-08 61.6 4.0 29 270-298 2-30 (180)
463 PLN02674 adenylate kinase 96.9 0.001 2.2E-08 64.8 4.3 30 268-297 31-60 (244)
464 PRK13851 type IV secretion sys 96.9 0.0012 2.7E-08 67.5 4.9 69 269-338 163-247 (344)
465 PF00406 ADK: Adenylate kinase 96.9 0.0007 1.5E-08 60.9 2.8 26 273-298 1-26 (151)
466 COG2274 SunT ABC-type bacterio 96.9 0.67 1.4E-05 52.2 26.8 26 267-292 498-523 (709)
467 cd03282 ABC_MSH4_euk MutS4 hom 96.9 0.0086 1.9E-07 56.9 10.3 21 269-289 30-50 (204)
468 COG2805 PilT Tfp pilus assembl 96.8 0.004 8.7E-08 61.3 8.1 70 267-338 124-209 (353)
469 cd03228 ABCC_MRP_Like The MRP 96.8 0.011 2.4E-07 54.4 10.8 26 267-292 27-52 (171)
470 PRK01184 hypothetical protein; 96.8 0.0011 2.3E-08 61.8 4.0 29 270-299 3-31 (184)
471 TIGR02173 cyt_kin_arch cytidyl 96.8 0.0011 2.3E-08 60.7 3.9 28 271-298 3-30 (171)
472 COG4178 ABC-type uncharacteriz 96.8 0.0066 1.4E-07 65.8 10.4 27 266-292 417-443 (604)
473 TIGR02655 circ_KaiC circadian 96.8 0.011 2.3E-07 63.9 12.1 96 264-364 258-386 (484)
474 COG1419 FlhF Flagellar GTP-bin 96.8 0.0079 1.7E-07 62.0 10.5 26 267-292 202-227 (407)
475 PF01443 Viral_helicase1: Vira 96.8 0.0013 2.8E-08 63.4 4.7 22 271-292 1-22 (234)
476 PF13521 AAA_28: AAA domain; P 96.8 0.00092 2E-08 60.9 3.1 26 271-297 2-27 (163)
477 PF05872 DUF853: Bacterial pro 96.8 0.0081 1.7E-07 62.5 10.1 71 330-407 258-330 (502)
478 cd03246 ABCC_Protease_Secretio 96.8 0.017 3.7E-07 53.1 11.6 24 269-292 29-52 (173)
479 PRK14526 adenylate kinase; Pro 96.8 0.0013 2.8E-08 62.8 4.0 28 270-297 2-29 (211)
480 TIGR00152 dephospho-CoA kinase 96.8 0.0022 4.7E-08 60.0 5.5 28 271-298 2-29 (188)
481 COG1066 Sms Predicted ATP-depe 96.8 0.013 2.8E-07 60.3 11.3 108 266-374 91-217 (456)
482 PRK04328 hypothetical protein; 96.8 0.01 2.2E-07 58.2 10.5 36 265-300 19-58 (249)
483 TIGR02788 VirB11 P-type DNA tr 96.7 0.0064 1.4E-07 61.6 9.1 69 269-338 145-229 (308)
484 PRK05541 adenylylsulfate kinas 96.7 0.0018 3.9E-08 59.8 4.7 27 267-293 6-32 (176)
485 cd01125 repA Hexameric Replica 96.7 0.022 4.8E-07 55.3 12.6 21 271-291 4-24 (239)
486 cd03214 ABC_Iron-Siderophores_ 96.7 0.014 2.9E-07 54.2 10.6 25 268-292 25-49 (180)
487 PF13086 AAA_11: AAA domain; P 96.7 0.0011 2.4E-08 63.4 3.3 22 271-292 20-41 (236)
488 PF01580 FtsK_SpoIIIE: FtsK/Sp 96.7 0.0091 2E-07 56.5 9.6 23 270-292 40-62 (205)
489 TIGR02538 type_IV_pilB type IV 96.7 0.0051 1.1E-07 67.5 8.8 93 236-338 293-396 (564)
490 PF13481 AAA_25: AAA domain; P 96.7 0.0072 1.6E-07 56.4 8.5 23 270-292 34-56 (193)
491 PRK10078 ribose 1,5-bisphospho 96.7 0.0014 2.9E-08 61.3 3.4 27 270-296 4-30 (186)
492 PRK05480 uridine/cytidine kina 96.7 0.0026 5.6E-08 60.5 5.4 36 269-304 7-43 (209)
493 PRK12339 2-phosphoglycerate ki 96.7 0.0018 3.9E-08 61.1 4.2 28 269-296 4-31 (197)
494 cd03247 ABCC_cytochrome_bd The 96.7 0.018 4E-07 53.2 11.0 26 267-292 27-52 (178)
495 PLN02199 shikimate kinase 96.7 0.0026 5.7E-08 63.1 5.5 33 268-300 102-134 (303)
496 cd03284 ABC_MutS1 MutS1 homolo 96.7 0.014 3E-07 55.9 10.4 22 269-290 31-52 (216)
497 TIGR02236 recomb_radA DNA repa 96.7 0.012 2.7E-07 59.5 10.5 40 264-303 90-139 (310)
498 PRK10263 DNA translocase FtsK; 96.7 0.023 5E-07 66.3 13.5 76 329-411 1142-1219(1355)
499 TIGR00959 ffh signal recogniti 96.6 0.023 5E-07 60.0 12.6 38 267-304 98-139 (428)
500 PHA02530 pseT polynucleotide k 96.6 0.0016 3.6E-08 65.5 3.9 31 270-301 4-34 (300)
No 1
>KOG0742 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=9.3e-75 Score=567.83 Aligned_cols=473 Identities=72% Similarity=1.051 Sum_probs=448.5
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHhHHHHHHhhHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhHHHH
Q 010366 37 RHVYKFDWHLLQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHE 116 (512)
Q Consensus 37 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (512)
+-=|+|.|++++.+.+.++..|++.+++|+++..|||..++.++|+++.++++++.++.++++++...+..+++++++..
T Consensus 154 rYqD~larkr~~~e~e~qr~~n~ElvrmQEeS~irqE~aRraTeE~iqaqrr~tE~erae~EretiRvkA~Aeaegrahe 233 (630)
T KOG0742|consen 154 RYQDKLARKRYEDELEAQRRLNEELVRMQEESVIRQEQARRATEEQIQAQRRKTEMERAEAERETIRVKAKAEAEGRAHE 233 (630)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhHHHHHHhHHHHHHHHHHHHhHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHhhhcchhh
Confidence 44589999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh
Q 010366 117 AKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRIL 196 (512)
Q Consensus 117 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l 196 (512)
.+-+.|++..+++.++.++|.+|+++|++.+..++.++..+++|++.+...|+++|++|+|+|++++++.|+|.||++.|
T Consensus 234 akl~edvnrr~l~~~~n~eRekwl~aInTtf~higgG~r~~ltD~~Kli~tVgGlTaLAaGvYTtkeg~~V~w~yi~r~L 313 (630)
T KOG0742|consen 234 AKLNEDVNRRQLRLKANEEREKWLEAINTTFTHIGGGLRAFLTDWNKLIATVGGLTALAAGVYTTKEGTLVTWRYIERRL 313 (630)
T ss_pred hhhhHHHHHHHHHHHhhhHHHHHHHHHhhhHHHhhhHHHHHhhhhHhHHHHhhhHHHHHhhheeccccchhHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecC
Q 010366 197 GQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGP 276 (512)
Q Consensus 197 ~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~Gp 276 (512)
|+|++|+|+|+..+||...+......|..-. .....+...|++||.+|.+...|.++....++.+.+..|++++|||||
T Consensus 314 GqPSLiREsSrg~~pw~gsls~~k~~i~~~~-~~s~~gk~pl~~ViL~psLe~Rie~lA~aTaNTK~h~apfRNilfyGP 392 (630)
T KOG0742|consen 314 GQPSLIRESSRGRFPWIGSLSALKHPIQGSR-SASSRGKDPLEGVILHPSLEKRIEDLAIATANTKKHQAPFRNILFYGP 392 (630)
T ss_pred CCchhhhhhccccCCCcccHHHHhchhhhhH-hhhhcCCCCcCCeecCHHHHHHHHHHHHHhcccccccchhhheeeeCC
Confidence 9999999999999999988887777766522 223556677999999999999999999999999999999999999999
Q ss_pred CCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHH
Q 010366 277 PGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSAL 356 (512)
Q Consensus 277 pGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l 356 (512)
||||||++|+.||...|.+|..++++++.+.|.+....++.+|+|+++++++.+|||||+|.++..++...++++.+..|
T Consensus 393 PGTGKTm~ArelAr~SGlDYA~mTGGDVAPlG~qaVTkiH~lFDWakkS~rGLllFIDEADAFLceRnktymSEaqRsaL 472 (630)
T KOG0742|consen 393 PGTGKTMFARELARHSGLDYAIMTGGDVAPLGAQAVTKIHKLFDWAKKSRRGLLLFIDEADAFLCERNKTYMSEAQRSAL 472 (630)
T ss_pred CCCCchHHHHHHHhhcCCceehhcCCCccccchHHHHHHHHHHHHHhhcccceEEEehhhHHHHHHhchhhhcHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCC-Ccchhhhhhhhh
Q 010366 357 NALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRK-PGLVHRLFKSEQ 435 (512)
Q Consensus 357 ~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~-~~~~~~~~~~~~ 435 (512)
|.||...++.+.+++++++||.|..+|.++-+|||.+|+||+|..++|..++..|++++...+.... +..+..++++.+
T Consensus 473 NAlLfRTGdqSrdivLvlAtNrpgdlDsAV~DRide~veFpLPGeEERfkll~lYlnkyi~~~~~~~~~~~~~~lfkk~s 552 (630)
T KOG0742|consen 473 NALLFRTGDQSRDIVLVLATNRPGDLDSAVNDRIDEVVEFPLPGEEERFKLLNLYLNKYILKPATSGKPGKWSHLFKKES 552 (630)
T ss_pred HHHHHHhcccccceEEEeccCCccchhHHHHhhhhheeecCCCChHHHHHHHHHHHHHHhcCcCCCCCCchhhHHHhhhh
Confidence 9999999999999999999999999999999999999999999999999999999999997766555 566788999999
Q ss_pred hhhhhcC-CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q 010366 436 QKIEIKG-LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKLAAAGGG 510 (512)
Q Consensus 436 ~~~~~~~-~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~~~~~~~~~~~ 510 (512)
+++.+.. .++..+...|.+|+||||++|.+|+..+++++|++.++++|...|++.+++++.+|++|+.+...+.+
T Consensus 553 Q~i~l~~~~t~~~~~EaAkkTeGfSGREiakLva~vQAavYgsedcvLd~~lf~e~v~ykv~eHqqr~~La~e~~~ 628 (630)
T KOG0742|consen 553 QRIKLAGFDTGRKCSEAAKKTEGFSGREIAKLVASVQAAVYGSEDCVLDEALFDERVDYKVQEHQQRMWLAAEGSG 628 (630)
T ss_pred heeeeccchHHHHHHHHHHhccCCcHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHHHHHHHHHHHHhhcccc
Confidence 9999865 67789999999999999999999999999999999999999999999999999999999977666554
No 2
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.2e-37 Score=303.95 Aligned_cols=240 Identities=27% Similarity=0.382 Sum_probs=208.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhh-ch----hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATA-NT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|-|.++.++.+++.+...- ++ .-+-.||++||||||||||||++|+|+|++.+..|+.+.++++..
T Consensus 144 e~PdvtY~dIGGL~~Qi~EirE~VELPL~~PElF~~~GI~PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvgSElVq 223 (406)
T COG1222 144 EKPDVTYEDIGGLDEQIQEIREVVELPLKNPELFEELGIDPPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVGSELVQ 223 (406)
T ss_pred cCCCCChhhccCHHHHHHHHHHHhcccccCHHHHHHcCCCCCCceEeeCCCCCcHHHHHHHHHhccCceEEEeccHHHHH
Confidence 5788899999999999999987665432 21 223478999999999999999999999999999999999999876
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|+... ||||||||||+++.+|... +...+.+.++..||.+++ +...++-||++||+++.
T Consensus 224 KYiGEGaRlVRelF~lAreka-PsIIFiDEIDAIg~kR~d~~t~gDrEVQRTmleLL~qlDGFD~~~nvKVI~ATNR~D~ 302 (406)
T COG1222 224 KYIGEGARLVRELFELAREKA-PSIIFIDEIDAIGAKRFDSGTSGDREVQRTMLELLNQLDGFDPRGNVKVIMATNRPDI 302 (406)
T ss_pred HHhccchHHHHHHHHHHhhcC-CeEEEEechhhhhcccccCCCCchHHHHHHHHHHHHhccCCCCCCCeEEEEecCCccc
Confidence 77888999999999999877 8999999999999998664 345678888999999997 56678999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
|||+++| |||+.|+||+|+.+.|..||+.+..+... -.+.+++.||..++|+|
T Consensus 303 LDPALLRPGR~DRkIEfplPd~~gR~~Il~IHtrkM~l-------------------------~~dvd~e~la~~~~g~s 357 (406)
T COG1222 303 LDPALLRPGRFDRKIEFPLPDEEGRAEILKIHTRKMNL-------------------------ADDVDLELLARLTEGFS 357 (406)
T ss_pred cChhhcCCCcccceeecCCCCHHHHHHHHHHHhhhccC-------------------------ccCcCHHHHHHhcCCCc
Confidence 9999999 99999999999999999999999887532 34567999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
|+||+++|..+-..+.......+|.+||.+|++.+...
T Consensus 358 GAdlkaictEAGm~AiR~~R~~Vt~~DF~~Av~KV~~~ 395 (406)
T COG1222 358 GADLKAICTEAGMFAIRERRDEVTMEDFLKAVEKVVKK 395 (406)
T ss_pred hHHHHHHHHHHhHHHHHhccCeecHHHHHHHHHHHHhc
Confidence 99999999777766666667899999999999887653
No 3
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=100.00 E-value=2.3e-35 Score=275.82 Aligned_cols=236 Identities=30% Similarity=0.449 Sum_probs=204.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcC-CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cch
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHN-APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 309 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~-~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~ 309 (512)
..+..+|+++||+++++...+-+...+.++...+ +.|++||||||||||||++|+++|++...|++.+....+.. +.+
T Consensus 114 ~~~~it~ddViGqEeAK~kcrli~~yLenPe~Fg~WAPknVLFyGppGTGKTm~Akalane~kvp~l~vkat~liGehVG 193 (368)
T COG1223 114 IISDITLDDVIGQEEAKRKCRLIMEYLENPERFGDWAPKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATELIGEHVG 193 (368)
T ss_pred hhccccHhhhhchHHHHHHHHHHHHHhhChHHhcccCcceeEEECCCCccHHHHHHHHhcccCCceEEechHHHHHHHhh
Confidence 4566789999999999999999999999988755 77899999999999999999999999999999999888765 778
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCHHHH
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVA 387 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~al~ 387 (512)
+..+.++.+++.|.... |||+||||+|.++-.|..+........++|.||..++ ....+|+.|++||.|+.|||+++
T Consensus 194 dgar~Ihely~rA~~~a-PcivFiDE~DAiaLdRryQelRGDVsEiVNALLTelDgi~eneGVvtIaaTN~p~~LD~aiR 272 (368)
T COG1223 194 DGARRIHELYERARKAA-PCIVFIDELDAIALDRRYQELRGDVSEIVNALLTELDGIKENEGVVTIAATNRPELLDPAIR 272 (368)
T ss_pred hHHHHHHHHHHHHHhcC-CeEEEehhhhhhhhhhhHHHhcccHHHHHHHHHHhccCcccCCceEEEeecCChhhcCHHHH
Confidence 89999999999999887 8999999999998888766555677889999999987 45567999999999999999999
Q ss_pred ccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHH
Q 010366 388 DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM 467 (512)
Q Consensus 388 ~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv 467 (512)
|||...|+|.+|+.++|..|++.++..+..+ + +..++.++..|.|+|||||..=+
T Consensus 273 sRFEeEIEF~LP~~eEr~~ile~y~k~~Plp------------------------v-~~~~~~~~~~t~g~SgRdikekv 327 (368)
T COG1223 273 SRFEEEIEFKLPNDEERLEILEYYAKKFPLP------------------------V-DADLRYLAAKTKGMSGRDIKEKV 327 (368)
T ss_pred hhhhheeeeeCCChHHHHHHHHHHHHhCCCc------------------------c-ccCHHHHHHHhCCCCchhHHHHH
Confidence 9999999999999999999999999886432 2 23489999999999999998755
Q ss_pred -HHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 468 -ASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 468 -~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
..+..-+...+...|+.+|++.|+..
T Consensus 328 lK~aLh~Ai~ed~e~v~~edie~al~k 354 (368)
T COG1223 328 LKTALHRAIAEDREKVEREDIEKALKK 354 (368)
T ss_pred HHHHHHHHHHhchhhhhHHHHHHHHHh
Confidence 44444444455589999999999976
No 4
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=8.2e-35 Score=303.21 Aligned_cols=240 Identities=26% Similarity=0.391 Sum_probs=204.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhh----chhhcC-CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATA----NTKAHN-APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~----~~~~~~-~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..+..+|+++-|.++++..+.+.+...- ...+.+ .||++||||||||||||++|+++|++.+.+|+.+.+.++.+
T Consensus 427 e~p~v~W~dIGGlE~lK~elq~~V~~p~~~pe~F~r~Gi~ppkGVLlyGPPGC~KT~lAkalAne~~~nFlsvkgpEL~s 506 (693)
T KOG0730|consen 427 EMPNVSWDDIGGLEELKRELQQAVEWPLKHPEKFARFGISPPKGVLLYGPPGCGKTLLAKALANEAGMNFLSVKGPELFS 506 (693)
T ss_pred cCCCCChhhccCHHHHHHHHHHHHhhhhhchHHHHHhcCCCCceEEEECCCCcchHHHHHHHhhhhcCCeeeccCHHHHH
Confidence 3566679999999999999987554332 223334 78899999999999999999999999999999999999765
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 383 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~ 383 (512)
+.++++..++.+|+.|+... ||||||||||.+...|++.. +.....++++||.+++ +...+|+||++||+|+.+|
T Consensus 507 k~vGeSEr~ir~iF~kAR~~a-P~IiFfDEiDsi~~~R~g~~-~~v~~RVlsqLLtEmDG~e~~k~V~ViAATNRpd~ID 584 (693)
T KOG0730|consen 507 KYVGESERAIREVFRKARQVA-PCIIFFDEIDALAGSRGGSS-SGVTDRVLSQLLTEMDGLEALKNVLVIAATNRPDMID 584 (693)
T ss_pred HhcCchHHHHHHHHHHHhhcC-CeEEehhhHHhHhhccCCCc-cchHHHHHHHHHHHcccccccCcEEEEeccCChhhcC
Confidence 88999999999999999877 69999999999999998544 4778899999999996 5567899999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
++++| |||..|++|+|+.+.|.+|++.++++... -.+.+++.||..|+||||+
T Consensus 585 ~ALlRPGRlD~iiyVplPD~~aR~~Ilk~~~kkmp~-------------------------~~~vdl~~La~~T~g~SGA 639 (693)
T KOG0730|consen 585 PALLRPGRLDRIIYVPLPDLEARLEILKQCAKKMPF-------------------------SEDVDLEELAQATEGYSGA 639 (693)
T ss_pred HHHcCCcccceeEeecCccHHHHHHHHHHHHhcCCC-------------------------CccccHHHHHHHhccCChH
Confidence 99999 99999999999999999999999987532 2234799999999999999
Q ss_pred HHHHHHHHHHHHHh--CCCCCccCHHHHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVY--GSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 462 dI~~lv~~~~aa~~--~~~~~~it~e~~~~al~~~~~~~ 498 (512)
||..+|+.+...+. .-+...|+..||.+|++......
T Consensus 640 el~~lCq~A~~~a~~e~i~a~~i~~~hf~~al~~~r~s~ 678 (693)
T KOG0730|consen 640 EIVAVCQEAALLALRESIEATEITWQHFEEALKAVRPSL 678 (693)
T ss_pred HHHHHHHHHHHHHHHHhcccccccHHHHHHHHHhhcccC
Confidence 99999965443333 23346899999999998876543
No 5
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=7.1e-35 Score=295.17 Aligned_cols=239 Identities=28% Similarity=0.380 Sum_probs=207.9
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cch
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 309 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~ 309 (512)
..+|+||-|.++++..+.+++...+++.. +|.-|++|||+||||||||+|||++|.+.+.||++.+++++.. +.+
T Consensus 300 nv~F~dVkG~DEAK~ELeEiVefLkdP~kftrLGGKLPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~sGSEFdEm~VG 379 (752)
T KOG0734|consen 300 NVTFEDVKGVDEAKQELEEIVEFLKDPTKFTRLGGKLPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYASGSEFDEMFVG 379 (752)
T ss_pred ccccccccChHHHHHHHHHHHHHhcCcHHhhhccCcCCCceEEeCCCCCchhHHHHHhhcccCCCeEeccccchhhhhhc
Confidence 45699999999999999999999887654 5677799999999999999999999999999999999999987 677
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCHHHH
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVA 387 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~al~ 387 (512)
.+..+++.+|..|+... ||||||||+|.++++|...... ..++.+|+||.+++ ..+.+++||++||.|+.||+++.
T Consensus 380 vGArRVRdLF~aAk~~A-PcIIFIDEiDavG~kR~~~~~~-y~kqTlNQLLvEmDGF~qNeGiIvigATNfpe~LD~AL~ 457 (752)
T KOG0734|consen 380 VGARRVRDLFAAAKARA-PCIIFIDEIDAVGGKRNPSDQH-YAKQTLNQLLVEMDGFKQNEGIIVIGATNFPEALDKALT 457 (752)
T ss_pred ccHHHHHHHHHHHHhcC-CeEEEEechhhhcccCCccHHH-HHHHHHHHHHHHhcCcCcCCceEEEeccCChhhhhHHhc
Confidence 78899999999999877 8999999999999999877644 78899999999997 34557999999999999999999
Q ss_pred c--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 388 D--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 388 ~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
| |||..|.+|.|+..-|.+|++.|+.+... -.+.++..||.-|.||||+||.+
T Consensus 458 RPGRFD~~v~Vp~PDv~GR~eIL~~yl~ki~~-------------------------~~~VD~~iiARGT~GFsGAdLaN 512 (752)
T KOG0734|consen 458 RPGRFDRHVTVPLPDVRGRTEILKLYLSKIPL-------------------------DEDVDPKIIARGTPGFSGADLAN 512 (752)
T ss_pred CCCccceeEecCCCCcccHHHHHHHHHhcCCc-------------------------ccCCCHhHhccCCCCCchHHHHH
Confidence 8 99999999999999999999999987532 12445788999999999999999
Q ss_pred HHHH--HHHHHhCCCCCccCHHHHHHHHHHHHHHHHHHH
Q 010366 466 LMAS--VQAAVYGSENCVLDPSLFREVVDYKVAEHQQRR 502 (512)
Q Consensus 466 lv~~--~~aa~~~~~~~~it~e~~~~al~~~~~~~~~~~ 502 (512)
|++. +.++.. +...+|+.+++.|-+..+-...+|.
T Consensus 513 lVNqAAlkAa~d--ga~~VtM~~LE~akDrIlMG~ERks 549 (752)
T KOG0734|consen 513 LVNQAALKAAVD--GAEMVTMKHLEFAKDRILMGPERKS 549 (752)
T ss_pred HHHHHHHHHHhc--CcccccHHHHhhhhhheeecccccc
Confidence 9953 344444 3478999999999888776655553
No 6
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=5e-33 Score=273.15 Aligned_cols=242 Identities=24% Similarity=0.342 Sum_probs=202.4
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhh----chhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATA----NTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~----~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
...|...|+||.|..++++.|.+.+-..- ..+....|+++||++||||||||+||+++|.+++..|+.|+.+.+.+
T Consensus 204 ~~np~ikW~DIagl~~AK~lL~EAVvlPi~mPe~F~GirrPWkgvLm~GPPGTGKTlLAKAvATEc~tTFFNVSsstltS 283 (491)
T KOG0738|consen 204 QRNPNIKWDDIAGLHEAKKLLKEAVVLPIWMPEFFKGIRRPWKGVLMVGPPGTGKTLLAKAVATECGTTFFNVSSSTLTS 283 (491)
T ss_pred ccCCCcChHhhcchHHHHHHHHHHHhhhhhhHHHHhhcccccceeeeeCCCCCcHHHHHHHHHHhhcCeEEEechhhhhh
Confidence 35677889999999999999977554322 23445589999999999999999999999999999999999999876
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC---CC---CCEEEEEeeCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---QS---KDIVLALATNRP 379 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---~~---~~viiI~ttN~~ 379 (512)
+-+++++.++-+|+.|+.+. |++|||||||.|+++|+....+++.+.+-+.||.+++- .. .-|+|+++||.|
T Consensus 284 KwRGeSEKlvRlLFemARfyA-PStIFiDEIDslcs~RG~s~EHEaSRRvKsELLvQmDG~~~t~e~~k~VmVLAATN~P 362 (491)
T KOG0738|consen 284 KWRGESEKLVRLLFEMARFYA-PSTIFIDEIDSLCSQRGGSSEHEASRRVKSELLVQMDGVQGTLENSKVVMVLAATNFP 362 (491)
T ss_pred hhccchHHHHHHHHHHHHHhC-CceeehhhHHHHHhcCCCccchhHHHHHHHHHHHHhhccccccccceeEEEEeccCCC
Confidence 78899999999999999887 89999999999999999998889999999999988862 22 237777899999
Q ss_pred CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 380 GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 380 ~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+.||.+|++||...|++|+|+.+.|..+++..+..... .++..++.||+.++|||
T Consensus 363 WdiDEAlrRRlEKRIyIPLP~~~~R~~Li~~~l~~~~~-------------------------~~~~~~~~lae~~eGyS 417 (491)
T KOG0738|consen 363 WDIDEALRRRLEKRIYIPLPDAEARSALIKILLRSVEL-------------------------DDPVNLEDLAERSEGYS 417 (491)
T ss_pred cchHHHHHHHHhhheeeeCCCHHHHHHHHHHhhccccC-------------------------CCCccHHHHHHHhcCCC
Confidence 99999999999999999999999999999999876432 45567999999999999
Q ss_pred HHHHHHHHHHH--HHHHh---C------------CCCCccCHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASV--QAAVY---G------------SENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 460 ~~dI~~lv~~~--~aa~~---~------------~~~~~it~e~~~~al~~~~~~~ 498 (512)
|.||..+|+.+ +.... + .....++..||++|+..+...-
T Consensus 418 GaDI~nvCreAsm~~mRR~i~g~~~~ei~~lakE~~~~pv~~~Dfe~Al~~v~pSv 473 (491)
T KOG0738|consen 418 GADITNVCREASMMAMRRKIAGLTPREIRQLAKEEPKMPVTNEDFEEALRKVRPSV 473 (491)
T ss_pred hHHHHHHHHHHHHHHHHHHHhcCCcHHhhhhhhhccccccchhhHHHHHHHcCcCC
Confidence 99999999433 33221 1 1113589999999998876543
No 7
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-32 Score=282.59 Aligned_cols=246 Identities=24% Similarity=0.354 Sum_probs=203.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHH-HHhhch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLS-GATANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~-~~~~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|-+..++..++...+ ...+.+ ++ +-.+|.+||||||||||||.+|+++|++.+.+|+.|.+.++.+
T Consensus 504 tVPdVtW~dIGaL~~vR~eL~~aI~~PiK~pd~~k~lGi~~PsGvLL~GPPGCGKTLlAKAVANEag~NFisVKGPELlN 583 (802)
T KOG0733|consen 504 TVPDVTWDDIGALEEVRLELNMAILAPIKRPDLFKALGIDAPSGVLLCGPPGCGKTLLAKAVANEAGANFISVKGPELLN 583 (802)
T ss_pred ecCCCChhhcccHHHHHHHHHHHHhhhccCHHHHHHhCCCCCCceEEeCCCCccHHHHHHHHhhhccCceEeecCHHHHH
Confidence 568889999999999999996644 333332 22 2356789999999999999999999999999999999999877
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 383 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~ 383 (512)
|.++++..++.+|..|+.+. ||||||||+|.|++.|+... +.....++|+||.+++ +...+|.||++||+|+.+|
T Consensus 584 kYVGESErAVR~vFqRAR~sa-PCVIFFDEiDaL~p~R~~~~-s~~s~RvvNqLLtElDGl~~R~gV~viaATNRPDiID 661 (802)
T KOG0733|consen 584 KYVGESERAVRQVFQRARASA-PCVIFFDEIDALVPRRSDEG-SSVSSRVVNQLLTELDGLEERRGVYVIAATNRPDIID 661 (802)
T ss_pred HHhhhHHHHHHHHHHHhhcCC-CeEEEecchhhcCcccCCCC-chhHHHHHHHHHHHhcccccccceEEEeecCCCcccc
Confidence 88999999999999999877 89999999999999998876 6677889999999997 4667899999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC--CCc
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFS 459 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--g~s 459 (512)
|++++ |||..+++++|+.++|..||+........ +.-+|.+++.||..+. |||
T Consensus 662 pAiLRPGRlDk~LyV~lPn~~eR~~ILK~~tkn~k~-----------------------pl~~dVdl~eia~~~~c~gft 718 (802)
T KOG0733|consen 662 PAILRPGRLDKLLYVGLPNAEERVAILKTITKNTKP-----------------------PLSSDVDLDEIARNTKCEGFT 718 (802)
T ss_pred hhhcCCCccCceeeecCCCHHHHHHHHHHHhccCCC-----------------------CCCcccCHHHHhhcccccCCc
Confidence 99999 99999999999999999999998864211 1245667999999976 999
Q ss_pred HHHHHHHHHHHHHHHh-----CCC-----------CCccCHHHHHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVY-----GSE-----------NCVLDPSLFREVVDYKVAEHQQRR 502 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~-----~~~-----------~~~it~e~~~~al~~~~~~~~~~~ 502 (512)
|+||..||+.+..++. ... .+.+|..||++|++.....-..+.
T Consensus 719 GADLaaLvreAsi~AL~~~~~~~~~~~~~~~~~~~~~~~t~~hF~eA~~~i~pSv~~~d 777 (802)
T KOG0733|consen 719 GADLAALVREASILALRESLFEIDSSEDDVTVRSSTIIVTYKHFEEAFQRIRPSVSERD 777 (802)
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccccCcccceeeeeeeecHHHHHHHHHhcCCCccHHH
Confidence 9999999943332221 110 135788899999998775544443
No 8
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=2.1e-32 Score=293.38 Aligned_cols=247 Identities=26% Similarity=0.371 Sum_probs=212.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
.....+|.||.|.++++..|.+++..+.++.. +-.+|+++||+||||||||.||+|+|.+.+.||+.++++++..
T Consensus 304 ~~t~V~FkDVAG~deAK~El~E~V~fLKNP~~Y~~lGAKiPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSGSEFvE~ 383 (774)
T KOG0731|consen 304 GNTGVKFKDVAGVDEAKEELMEFVKFLKNPEQYQELGAKIPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSGSEFVEM 383 (774)
T ss_pred CCCCCccccccCcHHHHHHHHHHHHHhcCHHHHHHcCCcCcCceEEECCCCCcHHHHHHHHhcccCCceeeechHHHHHH
Confidence 34557899999999999999999999988755 3368899999999999999999999999999999999999976
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcc---cCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERN---KTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~---~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
..+.....++.+|..++... ||||||||||.+...+. ...........||++|.++| ....+|+|+++||+++.
T Consensus 384 ~~g~~asrvr~lf~~ar~~a-P~iifideida~~~~r~G~~~~~~~~e~e~tlnQll~emDgf~~~~~vi~~a~tnr~d~ 462 (774)
T KOG0731|consen 384 FVGVGASRVRDLFPLARKNA-PSIIFIDEIDAVGRKRGGKGTGGGQDEREQTLNQLLVEMDGFETSKGVIVLAATNRPDI 462 (774)
T ss_pred hcccchHHHHHHHHHhhccC-CeEEEecccccccccccccccCCCChHHHHHHHHHHHHhcCCcCCCcEEEEeccCCccc
Confidence 44555789999999999877 89999999999999884 33446778889999999997 34567999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+|+++++ |||..|+++.|+...|.+|++.++...... .++.++..+|..|.||+
T Consensus 463 ld~allrpGRfdr~i~i~~p~~~~r~~i~~~h~~~~~~~------------------------~e~~dl~~~a~~t~gf~ 518 (774)
T KOG0731|consen 463 LDPALLRPGRFDRQIQIDLPDVKGRASILKVHLRKKKLD------------------------DEDVDLSKLASLTPGFS 518 (774)
T ss_pred cCHHhcCCCccccceeccCCchhhhHHHHHHHhhccCCC------------------------cchhhHHHHHhcCCCCc
Confidence 9999999 999999999999999999999999775321 35567777999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRK 503 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~~~~ 503 (512)
|+||.++|+.+...+...+...|+..++..|++.....+..+..
T Consensus 519 gadl~n~~neaa~~a~r~~~~~i~~~~~~~a~~Rvi~G~~~~~~ 562 (774)
T KOG0731|consen 519 GADLANLCNEAALLAARKGLREIGTKDLEYAIERVIAGMEKKSR 562 (774)
T ss_pred HHHHHhhhhHHHHHHHHhccCccchhhHHHHHHHHhccccccch
Confidence 99999999666555555566899999999999988777655443
No 9
>CHL00195 ycf46 Ycf46; Provisional
Probab=99.97 E-value=8.1e-31 Score=276.66 Aligned_cols=239 Identities=18% Similarity=0.232 Sum_probs=196.8
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhh-chhhcC-CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cchh
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATA-NTKAHN-APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQ 310 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~-~~~~~~-~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~~ 310 (512)
+..+|++|.|.+.+++.+........ .....| .+++++|||||||||||++|+++|.+++.+++.++++.+.. +.++
T Consensus 223 ~~~~~~dvgGl~~lK~~l~~~~~~~~~~~~~~gl~~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~~~l~~~~vGe 302 (489)
T CHL00195 223 VNEKISDIGGLDNLKDWLKKRSTSFSKQASNYGLPTPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDVGKLFGGIVGE 302 (489)
T ss_pred CCCCHHHhcCHHHHHHHHHHHHHHhhHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEhHHhcccccCh
Confidence 45679999999999998876443322 122223 56789999999999999999999999999999999987654 6778
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHc--
Q 010366 311 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD-- 388 (512)
Q Consensus 311 ~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~-- 388 (512)
+...++.+|..+.... ||||||||||.++..+.....+.....++..++..+++...+++||+|||.++.+||++++
T Consensus 303 se~~l~~~f~~A~~~~-P~IL~IDEID~~~~~~~~~~d~~~~~rvl~~lL~~l~~~~~~V~vIaTTN~~~~Ld~allR~G 381 (489)
T CHL00195 303 SESRMRQMIRIAEALS-PCILWIDEIDKAFSNSESKGDSGTTNRVLATFITWLSEKKSPVFVVATANNIDLLPLEILRKG 381 (489)
T ss_pred HHHHHHHHHHHHHhcC-CcEEEehhhhhhhccccCCCCchHHHHHHHHHHHHHhcCCCceEEEEecCChhhCCHHHhCCC
Confidence 8899999999988766 8999999999998765544445567788889998887777889999999999999999998
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHH
Q 010366 389 RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMA 468 (512)
Q Consensus 389 R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~ 468 (512)
|||.+++++.|+.++|.+|++.++.+.... ..++.+++.+|..|+||||+||.++|.
T Consensus 382 RFD~~i~v~lP~~~eR~~Il~~~l~~~~~~-----------------------~~~~~dl~~La~~T~GfSGAdI~~lv~ 438 (489)
T CHL00195 382 RFDEIFFLDLPSLEEREKIFKIHLQKFRPK-----------------------SWKKYDIKKLSKLSNKFSGAEIEQSII 438 (489)
T ss_pred cCCeEEEeCCcCHHHHHHHHHHHHhhcCCC-----------------------cccccCHHHHHhhcCCCCHHHHHHHHH
Confidence 999999999999999999999999874311 134556999999999999999999996
Q ss_pred HHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 469 SVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 469 ~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
.+...+...+ ..+|.++|..|+...++.
T Consensus 439 eA~~~A~~~~-~~lt~~dl~~a~~~~~Pl 466 (489)
T CHL00195 439 EAMYIAFYEK-REFTTDDILLALKQFIPL 466 (489)
T ss_pred HHHHHHHHcC-CCcCHHHHHHHHHhcCCC
Confidence 5555444333 679999999999887764
No 10
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=3.6e-31 Score=272.26 Aligned_cols=213 Identities=25% Similarity=0.371 Sum_probs=182.8
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchh----hcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cch
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 309 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~----~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~ 309 (512)
...|+++-|.+.....+..++.....+. -+-.||++||||||||||||+||+++|.+++.||+.+++.++.+ +.+
T Consensus 186 nv~f~diGG~d~~~~el~~li~~i~~Pe~~~~lGv~PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isApeivSGvSG 265 (802)
T KOG0733|consen 186 NVSFSDIGGLDKTLAELCELIIHIKHPEVFSSLGVRPPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAPEIVSGVSG 265 (802)
T ss_pred CcchhhccChHHHHHHHHHHHHHhcCchhHhhcCCCCCCceeeeCCCCccHHHHHHHHhhhcCCceEeecchhhhcccCc
Confidence 4579999999999999988777765532 24479999999999999999999999999999999999988765 888
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC------CCCCEEEEEeeCCCCCCC
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD------QSKDIVLALATNRPGDLD 383 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~------~~~~viiI~ttN~~~~l~ 383 (512)
+++++++++|+.|.... ||||||||||.+.++|.... .+..+.++.+||..|++ ....|+||++||+|+.+|
T Consensus 266 ESEkkiRelF~~A~~~a-PcivFiDeIDAI~pkRe~aq-reMErRiVaQLlt~mD~l~~~~~~g~~VlVIgATnRPDslD 343 (802)
T KOG0733|consen 266 ESEKKIRELFDQAKSNA-PCIVFIDEIDAITPKREEAQ-REMERRIVAQLLTSMDELSNEKTKGDPVLVIGATNRPDSLD 343 (802)
T ss_pred ccHHHHHHHHHHHhccC-CeEEEeecccccccchhhHH-HHHHHHHHHHHHHhhhcccccccCCCCeEEEecCCCCcccC
Confidence 99999999999999877 89999999999999998743 44567778888877763 246799999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
|+|++ |||..|.+..|+..+|.+||+..+..+... .+-++..||..|.||.|+
T Consensus 344 paLRRaGRFdrEI~l~vP~e~aR~~IL~~~~~~lrl~-------------------------g~~d~~qlA~lTPGfVGA 398 (802)
T KOG0733|consen 344 PALRRAGRFDREICLGVPSETAREEILRIICRGLRLS-------------------------GDFDFKQLAKLTPGFVGA 398 (802)
T ss_pred HHHhccccccceeeecCCchHHHHHHHHHHHhhCCCC-------------------------CCcCHHHHHhcCCCccch
Confidence 99998 999999999999999999999999876432 234589999999999999
Q ss_pred HHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAV 474 (512)
Q Consensus 462 dI~~lv~~~~aa~ 474 (512)
|+.+||..+...+
T Consensus 399 DL~AL~~~Aa~vA 411 (802)
T KOG0733|consen 399 DLMALCREAAFVA 411 (802)
T ss_pred hHHHHHHHHHHHH
Confidence 9999995554443
No 11
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=99.97 E-value=7.2e-30 Score=264.13 Aligned_cols=243 Identities=23% Similarity=0.347 Sum_probs=197.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hc---hhh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-AN---TKA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~---~~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+..++.+...+... .. ... +-.|++++|||||||||||++|+++|+.++.+++.+.++.+..
T Consensus 138 ~~p~v~~~digGl~~~k~~l~~~v~~pl~~~~~~~~~Gl~~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~s~l~~ 217 (398)
T PTZ00454 138 EKPDVTYSDIGGLDIQKQEIREAVELPLTCPELYEQIGIDPPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVGSEFVQ 217 (398)
T ss_pred CCCCCCHHHcCCHHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHHH
Confidence 467788999999999999998866532 22 222 2357789999999999999999999999999999998877643
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~ 381 (512)
+.+++...+..+|..+.... |+||||||+|.++.++.... ........+..++..++. ...+++||+|||.++.
T Consensus 218 k~~ge~~~~lr~lf~~A~~~~-P~ILfIDEID~i~~~r~~~~~~~d~~~~r~l~~LL~~ld~~~~~~~v~VI~aTN~~d~ 296 (398)
T PTZ00454 218 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGADREVQRILLELLNQMDGFDQTTNVKVIMATNRADT 296 (398)
T ss_pred HhcchhHHHHHHHHHHHHhcC-CeEEEEECHhhhccccccccCCccHHHHHHHHHHHHHhhccCCCCCEEEEEecCCchh
Confidence 45566778899999988765 89999999999987764322 234566778888888763 3457999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||++++ ||+..|+|++|+.++|..|++.++..... ..+.++..++..++|||
T Consensus 297 LDpAllR~GRfd~~I~~~~P~~~~R~~Il~~~~~~~~l-------------------------~~dvd~~~la~~t~g~s 351 (398)
T PTZ00454 297 LDPALLRPGRLDRKIEFPLPDRRQKRLIFQTITSKMNL-------------------------SEEVDLEDFVSRPEKIS 351 (398)
T ss_pred CCHHHcCCCcccEEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CcccCHHHHHHHcCCCC
Confidence 9999998 99999999999999999999988765321 23346889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQ 500 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~ 500 (512)
|+||..+|..+...+.......|+.+||.+|+......+..
T Consensus 352 gaDI~~l~~eA~~~A~r~~~~~i~~~df~~A~~~v~~~~~~ 392 (398)
T PTZ00454 352 AADIAAICQEAGMQAVRKNRYVILPKDFEKGYKTVVRKTDR 392 (398)
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhcccc
Confidence 99999999777666666666899999999999988665433
No 12
>KOG0727 consensus 26S proteasome regulatory complex, ATPase RPT3 [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=1.2e-29 Score=236.52 Aligned_cols=240 Identities=25% Similarity=0.350 Sum_probs=200.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhh----chhh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATA----NTKA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~----~~~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..++.++-|.+-.++.+++.+...- .++. +-.||+++|+|||||||||+||+++|+.....|+.+.++++..
T Consensus 148 ekpdvsy~diggld~qkqeireavelplt~~~ly~qigidpprgvllygppg~gktml~kava~~t~a~firvvgsefvq 227 (408)
T KOG0727|consen 148 EKPDVSYADIGGLDVQKQEIREAVELPLTHADLYKQIGIDPPRGVLLYGPPGTGKTMLAKAVANHTTAAFIRVVGSEFVQ 227 (408)
T ss_pred CCCCccccccccchhhHHHHHHHHhccchHHHHHHHhCCCCCcceEEeCCCCCcHHHHHHHHhhccchheeeeccHHHHH
Confidence 4677789999999988888877554321 1222 3468899999999999999999999999999999999999865
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|+... |+||||||+|.+..++-.. +...+.+.+|..+|++++ +...|+-+|++||+.+.
T Consensus 228 kylgegprmvrdvfrlakena-psiifideidaiatkrfdaqtgadrevqril~ellnqmdgfdq~~nvkvimatnradt 306 (408)
T KOG0727|consen 228 KYLGEGPRMVRDVFRLAKENA-PSIIFIDEIDAIATKRFDAQTGADREVQRILIELLNQMDGFDQTTNVKVIMATNRADT 306 (408)
T ss_pred HHhccCcHHHHHHHHHHhccC-CcEEEeehhhhHhhhhccccccccHHHHHHHHHHHHhccCcCcccceEEEEecCcccc
Confidence 67788889999999999876 8999999999999887543 335677888899999986 45678999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||++++ |+|..|+||.|+..+++-++....++... -++.+++.+..+.+..|
T Consensus 307 ldpallrpgrldrkiefplpdrrqkrlvf~titskm~l-------------------------s~~vdle~~v~rpdkis 361 (408)
T KOG0727|consen 307 LDPALLRPGRLDRKIEFPLPDRRQKRLVFSTITSKMNL-------------------------SDEVDLEDLVARPDKIS 361 (408)
T ss_pred cCHhhcCCccccccccCCCCchhhhhhhHHhhhhcccC-------------------------CcccCHHHHhcCccccc
Confidence 9999998 99999999999999999999888776532 34557888998999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
+++|..+|+.+...+......++...+|+++....+..
T Consensus 362 ~adi~aicqeagm~avr~nryvvl~kd~e~ay~~~vk~ 399 (408)
T KOG0727|consen 362 GADINAICQEAGMLAVRENRYVVLQKDFEKAYKTVVKK 399 (408)
T ss_pred hhhHHHHHHHHhHHHHHhcceeeeHHHHHHHHHhhcCC
Confidence 99999999766655555556899999999999887644
No 13
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=5.1e-31 Score=250.82 Aligned_cols=211 Identities=28% Similarity=0.455 Sum_probs=181.7
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHH-hhch---hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGA-TANT---KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~---~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
...|...|++|.|.+.+++++.+.+.. +..+ .....|++++||||||||||++||+++|.+.+..|+.++.+++.+
T Consensus 125 ~EKPNVkWsDVAGLE~AKeALKEAVILPIKFPqlFtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAnSTFFSvSSSDLvS 204 (439)
T KOG0739|consen 125 REKPNVKWSDVAGLEGAKEALKEAVILPIKFPQLFTGKRKPWRGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVS 204 (439)
T ss_pred ccCCCCchhhhccchhHHHHHHhheeecccchhhhcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcCCceEEeehHHHHH
Confidence 356777899999999999999774432 2222 223468899999999999999999999999999999999999876
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc---CCCCCCEEEEEeeCCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT---GDQSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~---~~~~~~viiI~ttN~~~~l 382 (512)
+.++++.-+..+|+.|+.+. |+||||||||.+++.++.+. +++.+.+-..||.++ +.+...++|+++||.|+.|
T Consensus 205 KWmGESEkLVknLFemARe~k-PSIIFiDEiDslcg~r~enE-seasRRIKTEfLVQMqGVG~d~~gvLVLgATNiPw~L 282 (439)
T KOG0739|consen 205 KWMGESEKLVKNLFEMARENK-PSIIFIDEIDSLCGSRSENE-SEASRRIKTEFLVQMQGVGNDNDGVLVLGATNIPWVL 282 (439)
T ss_pred HHhccHHHHHHHHHHHHHhcC-CcEEEeehhhhhccCCCCCc-hHHHHHHHHHHHHhhhccccCCCceEEEecCCCchhH
Confidence 78899999999999999877 89999999999988877654 667777777777665 4677889999999999999
Q ss_pred CHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 383 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 383 ~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
|.++++||...|++|+|....|..+++.++.... +.+++.++..|+.+|+||||+|
T Consensus 283 DsAIRRRFekRIYIPLPe~~AR~~MF~lhlG~tp------------------------~~LT~~d~~eL~~kTeGySGsD 338 (439)
T KOG0739|consen 283 DSAIRRRFEKRIYIPLPEAHARARMFKLHLGDTP------------------------HVLTEQDFKELARKTEGYSGSD 338 (439)
T ss_pred HHHHHHHhhcceeccCCcHHHhhhhheeccCCCc------------------------cccchhhHHHHHhhcCCCCcCc
Confidence 9999999999999999999999999999886643 3488999999999999999999
Q ss_pred HHHHH
Q 010366 463 IAKLM 467 (512)
Q Consensus 463 I~~lv 467 (512)
|.-++
T Consensus 339 isivV 343 (439)
T KOG0739|consen 339 ISIVV 343 (439)
T ss_pred eEEEe
Confidence 87655
No 14
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=99.97 E-value=4e-29 Score=259.58 Aligned_cols=243 Identities=23% Similarity=0.374 Sum_probs=196.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|...|+++.|.++.++.+...+... ..+ .. +..|++++|||||||||||++|+++|+.++.+|+.++++++..
T Consensus 124 ~~p~~~~~di~Gl~~~~~~l~~~i~~pl~~~~~~~~~g~~~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~~~l~~ 203 (389)
T PRK03992 124 ESPNVTYEDIGGLEEQIREVREAVELPLKKPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVQ 203 (389)
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCceEEECCCCCChHHHHHHHHHHhCCCEEEeehHHHhH
Confidence 456778999999999999998766432 221 12 3367789999999999999999999999999999999988754
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC--CHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~ 381 (512)
+.+.+...++.+|..+.... |+||||||+|.++..+..... +......+..++..++. ...+++||+|||.++.
T Consensus 204 ~~~g~~~~~i~~~f~~a~~~~-p~IlfiDEiD~l~~~r~~~~~~~~~~~~~~l~~lL~~ld~~~~~~~v~VI~aTn~~~~ 282 (389)
T PRK03992 204 KFIGEGARLVRELFELAREKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAEMDGFDPRGNVKIIAATNRIDI 282 (389)
T ss_pred hhccchHHHHHHHHHHHHhcC-CeEEEEechhhhhcccccCCCCccHHHHHHHHHHHHhccccCCCCCEEEEEecCChhh
Confidence 55566778888999888755 899999999999877654322 34556677888877652 3457999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+|+++++ ||+..|+||+|+.++|.+|++.++..... -.+..+..+|..|+|||
T Consensus 283 ld~allRpgRfd~~I~v~~P~~~~R~~Il~~~~~~~~~-------------------------~~~~~~~~la~~t~g~s 337 (389)
T PRK03992 283 LDPAILRPGRFDRIIEVPLPDEEGRLEILKIHTRKMNL-------------------------ADDVDLEELAELTEGAS 337 (389)
T ss_pred CCHHHcCCccCceEEEECCCCHHHHHHHHHHHhccCCC-------------------------CCcCCHHHHHHHcCCCC
Confidence 9999997 99999999999999999999988765321 12245889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQ 500 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~ 500 (512)
|+||..+|..+...+.......|+.+||.+|++.....+..
T Consensus 338 gadl~~l~~eA~~~a~~~~~~~i~~~d~~~A~~~~~~~~~~ 378 (389)
T PRK03992 338 GADLKAICTEAGMFAIRDDRTEVTMEDFLKAIEKVMGKEEK 378 (389)
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhccccc
Confidence 99999999777666666666889999999999988765443
No 15
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=99.97 E-value=2.7e-29 Score=269.40 Aligned_cols=239 Identities=26% Similarity=0.376 Sum_probs=194.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..+..+|++|+|.++++..+..++.....+.. +..+++++|||||||||||++|+++|..++.+++.++++++..
T Consensus 48 ~~~~~~~~di~g~~~~k~~l~~~~~~l~~~~~~~~~g~~~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~~~~~~~~ 127 (495)
T TIGR01241 48 EKPKVTFKDVAGIDEAKEELMEIVDFLKNPSKFTKLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEM 127 (495)
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCeeeccHHHHHHH
Confidence 35677899999999999999888776654332 3467789999999999999999999999999999999887644
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l 382 (512)
+.+.+...++.+|..+.... |+||||||+|.++..+... ........+++.||..++. ...+++||+|||.++.+
T Consensus 128 ~~g~~~~~l~~~f~~a~~~~-p~Il~iDEid~l~~~r~~~~~~~~~~~~~~~~~lL~~~d~~~~~~~v~vI~aTn~~~~l 206 (495)
T TIGR01241 128 FVGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGTNTGVIVIAATNRPDVL 206 (495)
T ss_pred HhcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhccccCcCCccHHHHHHHHHHHhhhccccCCCCeEEEEecCChhhc
Confidence 33456678899999988765 8999999999998877542 2234556788899988863 34569999999999999
Q ss_pred CHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH
Q 010366 383 DSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 460 (512)
Q Consensus 383 ~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~ 460 (512)
||++++ ||+..++|+.|+.++|.+|++.++..... .++..+..+|..+.|||+
T Consensus 207 d~al~r~gRfd~~i~i~~Pd~~~R~~il~~~l~~~~~-------------------------~~~~~l~~la~~t~G~sg 261 (495)
T TIGR01241 207 DPALLRPGRFDRQVVVDLPDIKGREEILKVHAKNKKL-------------------------APDVDLKAVARRTPGFSG 261 (495)
T ss_pred CHHHhcCCcceEEEEcCCCCHHHHHHHHHHHHhcCCC-------------------------CcchhHHHHHHhCCCCCH
Confidence 999998 99999999999999999999998865311 134568899999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~ 496 (512)
+||..+|+.+...+.......||.+++..|++....
T Consensus 262 adl~~l~~eA~~~a~~~~~~~i~~~~l~~a~~~~~~ 297 (495)
T TIGR01241 262 ADLANLLNEAALLAARKNKTEITMNDIEEAIDRVIA 297 (495)
T ss_pred HHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhc
Confidence 999999975544444444578999999999998754
No 16
>CHL00176 ftsH cell division protein; Validated
Probab=99.96 E-value=1.1e-28 Score=268.19 Aligned_cols=239 Identities=24% Similarity=0.355 Sum_probs=196.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-C
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 307 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~ 307 (512)
.+..+|++++|.+++++.+..++.....+.. +..+++++||+||||||||++|+++|.+++.|++.++++++.. +
T Consensus 177 ~~~~~f~dv~G~~~~k~~l~eiv~~lk~~~~~~~~g~~~p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is~s~f~~~~ 256 (638)
T CHL00176 177 DTGITFRDIAGIEEAKEEFEEVVSFLKKPERFTAVGAKIPKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSISGSEFVEMF 256 (638)
T ss_pred CCCCCHHhccChHHHHHHHHHHHHHHhCHHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeeeccHHHHHHHh
Confidence 4456799999999999999998887776554 4456789999999999999999999999999999999988754 3
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCCC
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLD 383 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l~ 383 (512)
.+.....++.+|..+.... ||||||||+|.++..++.. ........+++.+|..++. ...+++||+|||.++.+|
T Consensus 257 ~g~~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~~r~~~~~~~~~e~~~~L~~LL~~~dg~~~~~~ViVIaaTN~~~~LD 335 (638)
T CHL00176 257 VGVGAARVRDLFKKAKENS-PCIVFIDEIDAVGRQRGAGIGGGNDEREQTLNQLLTEMDGFKGNKGVIVIAATNRVDILD 335 (638)
T ss_pred hhhhHHHHHHHHHHHhcCC-CcEEEEecchhhhhcccCCCCCCcHHHHHHHHHHHhhhccccCCCCeeEEEecCchHhhh
Confidence 3345567888999988655 8999999999998776432 2345667889999988863 345789999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++ ||+..+.|++|+.++|..|++.++.... ..++..+..+|..+.||||+
T Consensus 336 ~ALlRpGRFd~~I~v~lPd~~~R~~IL~~~l~~~~-------------------------~~~d~~l~~lA~~t~G~sga 390 (638)
T CHL00176 336 AALLRPGRFDRQITVSLPDREGRLDILKVHARNKK-------------------------LSPDVSLELIARRTPGFSGA 390 (638)
T ss_pred hhhhccccCceEEEECCCCHHHHHHHHHHHHhhcc-------------------------cchhHHHHHHHhcCCCCCHH
Confidence 99997 9999999999999999999999987521 14566799999999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
||..+++.+...+...+...||.++|.+|++.....
T Consensus 391 DL~~lvneAal~a~r~~~~~It~~dl~~Ai~rv~~g 426 (638)
T CHL00176 391 DLANLLNEAAILTARRKKATITMKEIDTAIDRVIAG 426 (638)
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHhh
Confidence 999999755443334445789999999999887553
No 17
>KOG0728 consensus 26S proteasome regulatory complex, ATPase RPT6 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=4.8e-29 Score=232.23 Aligned_cols=261 Identities=23% Similarity=0.314 Sum_probs=206.3
Q ss_pred CCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhc----hhh-cCCCCcceEEecCCCCchHHH
Q 010366 210 YPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATAN----TKA-HNAPFRNMLFYGPPGTGKTMA 284 (512)
Q Consensus 210 ~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~----~~~-~~~p~~~vLL~GppGtGKT~l 284 (512)
|.....++.....|-+|-. ..+.|..+++-+-|.+...+.+.+.+..... ... +-..|+++|||||||||||.+
T Consensus 119 Y~lhkiLpnKvDpLVsLMm-VeKvPDStYeMiGgLd~QIkeIkEVIeLPvKHPELF~aLGIaQPKGvlLygppgtGktLl 197 (404)
T KOG0728|consen 119 YTLHKILPNKVDPLVSLMM-VEKVPDSTYEMIGGLDKQIKEIKEVIELPVKHPELFEALGIAQPKGVLLYGPPGTGKTLL 197 (404)
T ss_pred hHHHHhcccccchhhHHHh-hhhCCccHHHHhccHHHHHHHHHHHHhccccCHHHHHhcCCCCCcceEEecCCCCchhHH
Confidence 3333444444444333322 2356777777777778888888776654321 112 225668999999999999999
Q ss_pred HHHHHHHhCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHH
Q 010366 285 ARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLF 361 (512)
Q Consensus 285 A~alA~~l~~~~~~v~~~~~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~ 361 (512)
|+++|+...+.|+.++++++.. +.+++...++++|-.|+... |+|||.||||++++.+..+ +..++.+.....+|+
T Consensus 198 araVahht~c~firvsgselvqk~igegsrmvrelfvmareha-psiifmdeidsigs~r~e~~~ggdsevqrtmlelln 276 (404)
T KOG0728|consen 198 ARAVAHHTDCTFIRVSGSELVQKYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSSRVESGSGGDSEVQRTMLELLN 276 (404)
T ss_pred HHHHHhhcceEEEEechHHHHHHHhhhhHHHHHHHHHHHHhcC-CceEeeecccccccccccCCCCccHHHHHHHHHHHH
Confidence 9999999999999999999865 66788889999999999987 8999999999999887543 235677778888888
Q ss_pred HcC--CCCCCEEEEEeeCCCCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhh
Q 010366 362 RTG--DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQK 437 (512)
Q Consensus 362 ~~~--~~~~~viiI~ttN~~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (512)
+++ +...++-+|++||+.+.+||++++ |+|..|+||+|+.+.|.+|++.+-.+....
T Consensus 277 qldgfeatknikvimatnridild~allrpgridrkiefp~p~e~ar~~ilkihsrkmnl~------------------- 337 (404)
T KOG0728|consen 277 QLDGFEATKNIKVIMATNRIDILDPALLRPGRIDRKIEFPPPNEEARLDILKIHSRKMNLT------------------- 337 (404)
T ss_pred hccccccccceEEEEeccccccccHhhcCCCcccccccCCCCCHHHHHHHHHHhhhhhchh-------------------
Confidence 886 567789999999999999999998 999999999999999999999988775432
Q ss_pred hhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 438 IEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 438 ~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
.--.+..+|+...|.||+++..+|..+-..+.......+|.+||+-|+..+...
T Consensus 338 ------rgi~l~kiaekm~gasgaevk~vcteagm~alrerrvhvtqedfemav~kvm~k 391 (404)
T KOG0728|consen 338 ------RGINLRKIAEKMPGASGAEVKGVCTEAGMYALRERRVHVTQEDFEMAVAKVMQK 391 (404)
T ss_pred ------cccCHHHHHHhCCCCccchhhhhhhhhhHHHHHHhhccccHHHHHHHHHHHHhc
Confidence 123489999999999999999999776666665555889999999999776543
No 18
>COG0465 HflB ATP-dependent Zn proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.4e-29 Score=264.73 Aligned_cols=245 Identities=26% Similarity=0.369 Sum_probs=207.9
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-C
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 307 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~ 307 (512)
....+|.|+.|.+++++.+.+++....++.+ +...|++++|+||||||||++|+++|.+.+.||+.++++++.. +
T Consensus 144 ~~~v~F~DVAG~dEakeel~EiVdfLk~p~ky~~lGakiPkGvlLvGpPGTGKTLLAkAvAgEA~VPFf~iSGS~FVemf 223 (596)
T COG0465 144 QVKVTFADVAGVDEAKEELSELVDFLKNPKKYQALGAKIPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSISGSDFVEMF 223 (596)
T ss_pred ccCcChhhhcCcHHHHHHHHHHHHHHhCchhhHhcccccccceeEecCCCCCcHHHHHHHhcccCCCceeccchhhhhhh
Confidence 3456799999999999999999999887664 3467799999999999999999999999999999999999887 5
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCCCC--CCEEEEEeeCCCCCCC
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGDQS--KDIVLALATNRPGDLD 383 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~~~--~~viiI~ttN~~~~l~ 383 (512)
.+-....++.+|..+++.. ||||||||+|++...|+.. +.+..-.+++|++|.+++-.. ..+++|++||+|+.+|
T Consensus 224 VGvGAsRVRdLF~qAkk~a-P~IIFIDEiDAvGr~Rg~g~GggnderEQTLNQlLvEmDGF~~~~gviviaaTNRpdVlD 302 (596)
T COG0465 224 VGVGASRVRDLFEQAKKNA-PCIIFIDEIDAVGRQRGAGLGGGNDEREQTLNQLLVEMDGFGGNEGVIVIAATNRPDVLD 302 (596)
T ss_pred cCCCcHHHHHHHHHhhccC-CCeEEEehhhhcccccCCCCCCCchHHHHHHHHHHhhhccCCCCCceEEEecCCCcccch
Confidence 5666788999999999887 7999999999999888543 345677789999999997443 5799999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
|+++| |||..|.++.|+...|.+|++.++..... -.+..+..+|..|.||||+
T Consensus 303 ~ALlRpgRFDRqI~V~~PDi~gRe~IlkvH~~~~~l-------------------------~~~Vdl~~iAr~tpGfsGA 357 (596)
T COG0465 303 PALLRPGRFDRQILVELPDIKGREQILKVHAKNKPL-------------------------AEDVDLKKIARGTPGFSGA 357 (596)
T ss_pred HhhcCCCCcceeeecCCcchhhHHHHHHHHhhcCCC-------------------------CCcCCHHHHhhhCCCcccc
Confidence 99998 99999999999999999999988765322 1233466799999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRK 503 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~~~~ 503 (512)
|+.++++.+-..+.......||..+|.+|++.......++..
T Consensus 358 dL~nl~NEAal~aar~n~~~i~~~~i~ea~drv~~G~erks~ 399 (596)
T COG0465 358 DLANLLNEAALLAARRNKKEITMRDIEEAIDRVIAGPERKSR 399 (596)
T ss_pred hHhhhHHHHHHHHHHhcCeeEeccchHHHHHHHhcCcCcCCc
Confidence 999999655444444555899999999999999887666554
No 19
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=99.96 E-value=2.3e-28 Score=254.51 Aligned_cols=240 Identities=21% Similarity=0.321 Sum_probs=193.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+..++.+..++... ..+ .. +-.|+.++|||||||||||++|+++|+.++.+|+.+.++++..
T Consensus 176 ~~p~~~~~DIgGl~~qi~~l~e~v~lpl~~p~~~~~~gi~~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~seL~~ 255 (438)
T PTZ00361 176 KAPLESYADIGGLEQQIQEIKEAVELPLTHPELYDDIGIKPPKGVILYGPPGTGKTLLAKAVANETSATFLRVVGSELIQ 255 (438)
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEecchhhh
Confidence 567788999999999999998876532 221 12 2357789999999999999999999999999999999888754
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~ 381 (512)
+.+.+...+..+|..+.... |+||||||+|.++.++... +........+..++..++. ...++.||+|||.++.
T Consensus 256 k~~Ge~~~~vr~lF~~A~~~~-P~ILfIDEID~l~~kR~~~~sgg~~e~qr~ll~LL~~Ldg~~~~~~V~VI~ATNr~d~ 334 (438)
T PTZ00361 256 KYLGDGPKLVRELFRVAEENA-PSIVFIDEIDAIGTKRYDATSGGEKEIQRTMLELLNQLDGFDSRGDVKVIMATNRIES 334 (438)
T ss_pred hhcchHHHHHHHHHHHHHhCC-CcEEeHHHHHHHhccCCCCCCcccHHHHHHHHHHHHHHhhhcccCCeEEEEecCChHH
Confidence 55566777899999888755 8999999999998776432 2234556677778877752 3457999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+|+++++ ||+..|+|++|+.++|.+|++.++.+... .++.++..++..++|||
T Consensus 335 LDpaLlRpGRfd~~I~~~~Pd~~~R~~Il~~~~~k~~l-------------------------~~dvdl~~la~~t~g~s 389 (438)
T PTZ00361 335 LDPALIRPGRIDRKIEFPNPDEKTKRRIFEIHTSKMTL-------------------------AEDVDLEEFIMAKDELS 389 (438)
T ss_pred hhHHhccCCeeEEEEEeCCCCHHHHHHHHHHHHhcCCC-------------------------CcCcCHHHHHHhcCCCC
Confidence 9999986 99999999999999999999988765421 12346888999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
|+||..+|..+...+.......||.+||.+|++.++..
T Consensus 390 gAdI~~i~~eA~~~Alr~~r~~Vt~~D~~~A~~~v~~~ 427 (438)
T PTZ00361 390 GADIKAICTEAGLLALRERRMKVTQADFRKAKEKVLYR 427 (438)
T ss_pred HHHHHHHHHHHHHHHHHhcCCccCHHHHHHHHHHHHhh
Confidence 99999999766665555666899999999999887543
No 20
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.3e-28 Score=261.51 Aligned_cols=239 Identities=26% Similarity=0.386 Sum_probs=202.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhh-----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKA-----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~-----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..+...|.++.|.+.++..+...+........ +-.|++++|||||||||||++|+++|.+++.+|+.+.++++.+
T Consensus 235 ~~~~v~~~diggl~~~k~~l~e~v~~~~~~~e~~~~~~~~~~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~~l~s 314 (494)
T COG0464 235 EDEDVTLDDIGGLEEAKEELKEAIETPLKRPELFRKLGLRPPKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGSELLS 314 (494)
T ss_pred CCCCcceehhhcHHHHHHHHHHHHHhHhhChHHHHhcCCCCCCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCHHHhc
Confidence 56777899999999999999887665543322 3467789999999999999999999999999999999998776
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 383 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~ 383 (512)
+.++++..++.+|..|+... ||||||||+|++++.++.... .....+++.++..++ +...+|++|+|||.|+.+|
T Consensus 315 k~vGesek~ir~~F~~A~~~~-p~iiFiDEiDs~~~~r~~~~~-~~~~r~~~~lL~~~d~~e~~~~v~vi~aTN~p~~ld 392 (494)
T COG0464 315 KWVGESEKNIRELFEKARKLA-PSIIFIDEIDSLASGRGPSED-GSGRRVVGQLLTELDGIEKAEGVLVIAATNRPDDLD 392 (494)
T ss_pred cccchHHHHHHHHHHHHHcCC-CcEEEEEchhhhhccCCCCCc-hHHHHHHHHHHHHhcCCCccCceEEEecCCCccccC
Confidence 88899999999999999766 899999999999999876552 233678889998885 5667899999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++ ||+..++||+|+.++|..|++.++.+.... ...+.++..++..++||||+
T Consensus 393 ~a~lR~gRfd~~i~v~~pd~~~r~~i~~~~~~~~~~~-----------------------~~~~~~~~~l~~~t~~~sga 449 (494)
T COG0464 393 PALLRPGRFDRLIYVPLPDLEERLEIFKIHLRDKKPP-----------------------LAEDVDLEELAEITEGYSGA 449 (494)
T ss_pred HhhcccCccceEeecCCCCHHHHHHHHHHHhcccCCc-----------------------chhhhhHHHHHHHhcCCCHH
Confidence 99999 999999999999999999999999753211 13567899999999999999
Q ss_pred HHHHHHHHHHHHHhCCC-CCccCHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSE-NCVLDPSLFREVVDYKV 495 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~-~~~it~e~~~~al~~~~ 495 (512)
||..+|..+...+.... ...+|.+||..|++...
T Consensus 450 di~~i~~ea~~~~~~~~~~~~~~~~~~~~a~~~~~ 484 (494)
T COG0464 450 DIAALVREAALEALREARRREVTLDDFLDALKKIK 484 (494)
T ss_pred HHHHHHHHHHHHHHHHhccCCccHHHHHHHHHhcC
Confidence 99999976665555444 56899999999998743
No 21
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=1.6e-28 Score=258.60 Aligned_cols=242 Identities=22% Similarity=0.312 Sum_probs=193.5
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHh-hc--hhhcC-CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGAT-AN--TKAHN-APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~--~~~~~-~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
++-|...|+||-|.++++..|.+.+... .. .-..| .+-.++|||||||||||.+|||+|.++...|+.|.+.++.+
T Consensus 664 PKIPnV~WdDVGGLeevK~eIldTIqlPL~hpeLfssglrkRSGILLYGPPGTGKTLlAKAVATEcsL~FlSVKGPELLN 743 (953)
T KOG0736|consen 664 PKIPNVSWDDVGGLEEVKTEILDTIQLPLKHPELFSSGLRKRSGILLYGPPGTGKTLLAKAVATECSLNFLSVKGPELLN 743 (953)
T ss_pred CCCCccchhcccCHHHHHHHHHHHhcCcccChhhhhccccccceeEEECCCCCchHHHHHHHHhhceeeEEeecCHHHHH
Confidence 3567778999999999999998766542 11 11122 33458999999999999999999999999999999999887
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCC-HHHHHHHHHHHHHcCC----CCCCEEEEEeeCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS-EAQRSALNALLFRTGD----QSKDIVLALATNRPG 380 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~-~~~~~~l~~ll~~~~~----~~~~viiI~ttN~~~ 380 (512)
+.++++++++++|+.|+... ||||||||+|++++.|+..+++ ..+..++.++|.+++. ...++.||++||+|+
T Consensus 744 MYVGqSE~NVR~VFerAR~A~-PCVIFFDELDSlAP~RG~sGDSGGVMDRVVSQLLAELDgls~~~s~~VFViGATNRPD 822 (953)
T KOG0736|consen 744 MYVGQSEENVREVFERARSAA-PCVIFFDELDSLAPNRGRSGDSGGVMDRVVSQLLAELDGLSDSSSQDVFVIGATNRPD 822 (953)
T ss_pred HHhcchHHHHHHHHHHhhccC-CeEEEeccccccCccCCCCCCccccHHHHHHHHHHHhhcccCCCCCceEEEecCCCcc
Confidence 88999999999999999766 9999999999999999876654 4677888999988862 556799999999999
Q ss_pred CCCHHHHc--cccceeecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc-C
Q 010366 381 DLDSAVAD--RIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-E 456 (512)
Q Consensus 381 ~l~~al~~--R~~~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-~ 456 (512)
.+||++++ |||.-+++.+++. +.+..+++....++... .+.++..||+++ .
T Consensus 823 LLDpALLRPGRFDKLvyvG~~~d~esk~~vL~AlTrkFkLd-------------------------edVdL~eiAk~cp~ 877 (953)
T KOG0736|consen 823 LLDPALLRPGRFDKLVYVGPNEDAESKLRVLEALTRKFKLD-------------------------EDVDLVEIAKKCPP 877 (953)
T ss_pred ccChhhcCCCccceeEEecCCccHHHHHHHHHHHHHHccCC-------------------------CCcCHHHHHhhCCc
Confidence 99999999 9999999988854 55778888877765432 334688999997 5
Q ss_pred CCcHHHHHHHHH-HHHHHHhC----------------CCCCccCHHHHHHHHHHHHHHH
Q 010366 457 GFSGREIAKLMA-SVQAAVYG----------------SENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 457 g~s~~dI~~lv~-~~~aa~~~----------------~~~~~it~e~~~~al~~~~~~~ 498 (512)
.|||+|+-.||. ++.+|... ...-+++++||.++++.....-
T Consensus 878 ~~TGADlYsLCSdA~l~AikR~i~~ie~g~~~~~e~~~~~v~V~~eDflks~~~l~PSv 936 (953)
T KOG0736|consen 878 NMTGADLYSLCSDAMLAAIKRTIHDIESGTISEEEQESSSVRVTMEDFLKSAKRLQPSV 936 (953)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHhhhccccccccCCceEEEEHHHHHHHHHhcCCcc
Confidence 799999999994 33333321 1124689999999998765443
No 22
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.96 E-value=3.1e-28 Score=272.62 Aligned_cols=239 Identities=24% Similarity=0.376 Sum_probs=193.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhh-ch----hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATA-NT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
.+...|+++.|.+.+++.+...+.... .. ..+..+++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 447 ~~~~~~~di~g~~~~k~~l~~~v~~~~~~~~~~~~~g~~~~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~~~l~~~ 526 (733)
T TIGR01243 447 VPNVRWSDIGGLEEVKQELREAVEWPLKHPEIFEKMGIRPPKGVLLFGPPGTGKTLLAKAVATESGANFIAVRGPEILSK 526 (733)
T ss_pred ccccchhhcccHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEehHHHhhc
Confidence 456679999999999999987665322 21 113357789999999999999999999999999999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCH
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 384 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 384 (512)
+.+++...++.+|..+.... |+||||||+|.+++.++....+.....+++.||..++ ....+++||+|||.++.+|+
T Consensus 527 ~vGese~~i~~~f~~A~~~~-p~iifiDEid~l~~~r~~~~~~~~~~~~~~~lL~~ldg~~~~~~v~vI~aTn~~~~ld~ 605 (733)
T TIGR01243 527 WVGESEKAIREIFRKARQAA-PAIIFFDEIDAIAPARGARFDTSVTDRIVNQLLTEMDGIQELSNVVVIAATNRPDILDP 605 (733)
T ss_pred ccCcHHHHHHHHHHHHHhcC-CEEEEEEChhhhhccCCCCCCccHHHHHHHHHHHHhhcccCCCCEEEEEeCCChhhCCH
Confidence 67788899999999998766 8999999999999888655445566778899998886 35668999999999999999
Q ss_pred HHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++++ ||+..++||+|+.++|.+||+.+...... .++.++..+|..|+||||+|
T Consensus 606 allRpgRfd~~i~v~~Pd~~~R~~i~~~~~~~~~~-------------------------~~~~~l~~la~~t~g~sgad 660 (733)
T TIGR01243 606 ALLRPGRFDRLILVPPPDEEARKEIFKIHTRSMPL-------------------------AEDVDLEELAEMTEGYTGAD 660 (733)
T ss_pred hhcCCCccceEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------CccCCHHHHHHHcCCCCHHH
Confidence 9997 99999999999999999999977654311 23446899999999999999
Q ss_pred HHHHHHHHHHHHhC------------------CCCCccCHHHHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYG------------------SENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 463 I~~lv~~~~aa~~~------------------~~~~~it~e~~~~al~~~~~~ 497 (512)
|..+|..+...+.. .....|+.+||.+|++...+.
T Consensus 661 i~~~~~~A~~~a~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~f~~al~~~~ps 713 (733)
T TIGR01243 661 IEAVCREAAMAALRESIGSPAKEKLEVGEEEFLKDLKVEMRHFLEALKKVKPS 713 (733)
T ss_pred HHHHHHHHHHHHHHHHhhhccchhhhcccccccccCcccHHHHHHHHHHcCCC
Confidence 99999544332211 012379999999999876544
No 23
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.7e-28 Score=239.99 Aligned_cols=236 Identities=28% Similarity=0.390 Sum_probs=190.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhc-h--h-hc--CCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATAN-T--K-AH--NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~-~--~-~~--~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
....+|+++-|.+.+++.+.+.+..... + . .+ -.|++++|||||||||||++|+++|++.|.+|+.|.++.+.+
T Consensus 86 ~I~v~f~DIggLe~v~~~L~e~VilPlr~pelF~~g~Ll~p~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~s~lt~ 165 (386)
T KOG0737|consen 86 EIGVSFDDIGGLEEVKDALQELVILPLRRPELFAKGKLLRPPKGILLYGPPGTGKTMLAKAIAKEAGANFINVSVSNLTS 165 (386)
T ss_pred hceeehhhccchHHHHHHHHHHHhhcccchhhhcccccccCCccceecCCCCchHHHHHHHHHHHcCCCcceeeccccch
Confidence 4455699999999999999876553321 1 1 11 158899999999999999999999999999999999999876
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~viiI~ttN~~~~ 381 (512)
+.+++...+..+|..|.+.. |+||||||+|.++..| ....+++....=+.|+...+ +....|+|+++||+|..
T Consensus 166 KWfgE~eKlv~AvFslAsKl~-P~iIFIDEvds~L~~R-~s~dHEa~a~mK~eFM~~WDGl~s~~~~rVlVlgATNRP~D 243 (386)
T KOG0737|consen 166 KWFGEAQKLVKAVFSLASKLQ-PSIIFIDEVDSFLGQR-RSTDHEATAMMKNEFMALWDGLSSKDSERVLVLGATNRPFD 243 (386)
T ss_pred hhHHHHHHHHHHHHhhhhhcC-cceeehhhHHHHHhhc-ccchHHHHHHHHHHHHHHhccccCCCCceEEEEeCCCCCcc
Confidence 67888899999999999877 8999999999999999 55557777777777776554 23335888999999999
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+|.+++||++..++++.|+..+|.+|++..+..... -++.++..+|..|+||||+
T Consensus 244 lDeAiiRR~p~rf~V~lP~~~qR~kILkviLk~e~~-------------------------e~~vD~~~iA~~t~GySGS 298 (386)
T KOG0737|consen 244 LDEAIIRRLPRRFHVGLPDAEQRRKILKVILKKEKL-------------------------EDDVDLDEIAQMTEGYSGS 298 (386)
T ss_pred HHHHHHHhCcceeeeCCCchhhHHHHHHHHhccccc-------------------------CcccCHHHHHHhcCCCcHH
Confidence 999999999999999999999999999999976432 2445799999999999999
Q ss_pred HHHHHHHHHHHH-----HhCC------C-----------------CCccCHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAA-----VYGS------E-----------------NCVLDPSLFREVVDYKV 495 (512)
Q Consensus 462 dI~~lv~~~~aa-----~~~~------~-----------------~~~it~e~~~~al~~~~ 495 (512)
||..+|..+... .... + ...++.++|..++..+-
T Consensus 299 DLkelC~~Aa~~~ire~~~~~~~~~d~d~~~~d~~~~~~~~~~~~~r~l~~eDf~~a~~~v~ 360 (386)
T KOG0737|consen 299 DLKELCRLAALRPIRELLVSETGLLDLDKAIADLKPTQAAASSCLLRPLEQEDFPKAINRVS 360 (386)
T ss_pred HHHHHHHHHhHhHHHHHHHhcccchhhhhhhhhccCCcccccccccCcccHHHHHHHHHhhh
Confidence 999999433211 1110 0 25688999999998433
No 24
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=2.5e-28 Score=229.23 Aligned_cols=243 Identities=24% Similarity=0.321 Sum_probs=203.4
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhh-----chhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATA-----NTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 305 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~-----~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~ 305 (512)
...|..++.++-|..+.++.+++.+...- ....+-.||+++|+|||||||||.+|+++|+..+..|+.+-++++.
T Consensus 169 eekpdvty~dvggckeqieklrevve~pll~perfv~lgidppkgvllygppgtgktl~aravanrtdacfirvigselv 248 (435)
T KOG0729|consen 169 EEKPDVTYSDVGGCKEQIEKLREVVELPLLHPERFVNLGIDPPKGVLLYGPPGTGKTLCARAVANRTDACFIRVIGSELV 248 (435)
T ss_pred ecCCCcccccccchHHHHHHHHHHHhccccCHHHHhhcCCCCCCceEEeCCCCCchhHHHHHHhcccCceEEeehhHHHH
Confidence 35778889999999999999988765432 1223447889999999999999999999999999999999999986
Q ss_pred C-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCC
Q 010366 306 P-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPG 380 (512)
Q Consensus 306 ~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~ 380 (512)
. +.++....++++|+.|+..+ -||||+||||.+++.+-.. +...+.+.....++.+++ +..+|+-++++||+|+
T Consensus 249 qkyvgegarmvrelf~martkk-aciiffdeidaiggarfddg~ggdnevqrtmleli~qldgfdprgnikvlmatnrpd 327 (435)
T KOG0729|consen 249 QKYVGEGARMVRELFEMARTKK-ACIIFFDEIDAIGGARFDDGAGGDNEVQRTMLELINQLDGFDPRGNIKVLMATNRPD 327 (435)
T ss_pred HHHhhhhHHHHHHHHHHhcccc-eEEEEeeccccccCccccCCCCCcHHHHHHHHHHHHhccCCCCCCCeEEEeecCCCC
Confidence 5 77888999999999998755 8999999999999887654 334567777778888886 4567899999999999
Q ss_pred CCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCC
Q 010366 381 DLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 458 (512)
Q Consensus 381 ~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 458 (512)
.+||++++ |+|..++|..|+.+-|..|++.+...... -.+--++.||..+..-
T Consensus 328 tldpallrpgrldrkvef~lpdlegrt~i~kihaksmsv-------------------------erdir~ellarlcpns 382 (435)
T KOG0729|consen 328 TLDPALLRPGRLDRKVEFGLPDLEGRTHIFKIHAKSMSV-------------------------ERDIRFELLARLCPNS 382 (435)
T ss_pred CcCHhhcCCcccccceeccCCcccccceeEEEecccccc-------------------------ccchhHHHHHhhCCCC
Confidence 99999998 99999999999999999999988765422 2344588899999999
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHH
Q 010366 459 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 459 s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~ 499 (512)
+|++|+.+|..+-..+......+.|+.+|.+|+..++....
T Consensus 383 tgaeirsvcteagmfairarrk~atekdfl~av~kvvkgy~ 423 (435)
T KOG0729|consen 383 TGAEIRSVCTEAGMFAIRARRKVATEKDFLDAVNKVVKGYA 423 (435)
T ss_pred cchHHHHHHHHhhHHHHHHHhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999976666665555588999999999998887654
No 25
>KOG0726 consensus 26S proteasome regulatory complex, ATPase RPT2 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.2e-28 Score=234.01 Aligned_cols=241 Identities=22% Similarity=0.322 Sum_probs=198.1
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhh----chhh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATA----NTKA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA 305 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~----~~~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~ 305 (512)
.+.|..+|.++-|.+...+.|.+.+...- .+.. +-.||++|+|||+||||||.||+++|+.....|+.+.++++.
T Consensus 177 eKaP~Ety~diGGle~QiQEiKEsvELPLthPE~YeemGikpPKGVIlyG~PGTGKTLLAKAVANqTSATFlRvvGseLi 256 (440)
T KOG0726|consen 177 EKAPQETYADIGGLESQIQEIKESVELPLTHPEYYEEMGIKPPKGVILYGEPGTGKTLLAKAVANQTSATFLRVVGSELI 256 (440)
T ss_pred ccCchhhhcccccHHHHHHHHHHhhcCCCCCHHHHHHcCCCCCCeeEEeCCCCCchhHHHHHHhcccchhhhhhhhHHHH
Confidence 36778889999998888887766554321 1122 337889999999999999999999999999999999999876
Q ss_pred C-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCC
Q 010366 306 P-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPG 380 (512)
Q Consensus 306 ~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~ 380 (512)
. +.++....++++|..|.... |+|+||||||.++.+|.+.. ...+.+..+..||++++ +...+|-||++||..+
T Consensus 257 QkylGdGpklvRqlF~vA~e~a-pSIvFiDEIdAiGtKRyds~SggerEiQrtmLELLNQldGFdsrgDvKvimATnrie 335 (440)
T KOG0726|consen 257 QKYLGDGPKLVRELFRVAEEHA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDSRGDVKVIMATNRIE 335 (440)
T ss_pred HHHhccchHHHHHHHHHHHhcC-CceEEeehhhhhccccccCCCccHHHHHHHHHHHHHhccCccccCCeEEEEeccccc
Confidence 5 67788889999999999877 89999999999998885533 34567777788888886 3456799999999999
Q ss_pred CCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCC
Q 010366 381 DLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 458 (512)
Q Consensus 381 ~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 458 (512)
.+||++++ |+|..|.||.|+...++.|+..+.+.... -.+..++.+...-+.+
T Consensus 336 ~LDPaLiRPGrIDrKIef~~pDe~TkkkIf~IHTs~Mtl-------------------------~~dVnle~li~~kddl 390 (440)
T KOG0726|consen 336 TLDPALIRPGRIDRKIEFPLPDEKTKKKIFQIHTSRMTL-------------------------AEDVNLEELIMTKDDL 390 (440)
T ss_pred ccCHhhcCCCccccccccCCCchhhhceeEEEeecccch-------------------------hccccHHHHhhccccc
Confidence 99999998 99999999999999999999988766532 2234577787777899
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 459 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 459 s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
||+||.++|..+-..+.....-.+|.+||.+|.+.+...
T Consensus 391 SGAdIkAictEaGllAlRerRm~vt~~DF~ka~e~V~~~ 429 (440)
T KOG0726|consen 391 SGADIKAICTEAGLLALRERRMKVTMEDFKKAKEKVLYK 429 (440)
T ss_pred ccccHHHHHHHHhHHHHHHHHhhccHHHHHHHHHHHHHh
Confidence 999999999776666655555789999999999988765
No 26
>KOG0652 consensus 26S proteasome regulatory complex, ATPase RPT5 [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.9e-27 Score=222.71 Aligned_cols=240 Identities=23% Similarity=0.298 Sum_probs=196.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhc----hhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TAN----TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~----~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|...++++-|.+..++.+.+.+-. ... -.-+-.||+++|+|||||||||.+|++.|...+..|..+.++.+..
T Consensus 164 ekPtE~YsDiGGldkQIqELvEAiVLpmth~ekF~~lgi~pPKGvLmYGPPGTGKTlmARAcAaqT~aTFLKLAgPQLVQ 243 (424)
T KOG0652|consen 164 EKPTEQYSDIGGLDKQIQELVEAIVLPMTHKEKFENLGIRPPKGVLMYGPPGTGKTLMARACAAQTNATFLKLAGPQLVQ 243 (424)
T ss_pred cCCcccccccccHHHHHHHHHHHhccccccHHHHHhcCCCCCCceEeeCCCCCcHHHHHHHHHHhccchHHHhcchHHHh
Confidence 45677789999988777776543322 111 1223478999999999999999999999999999999888877765
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~ 381 (512)
+.+++..-++..|..|+... |+||||||+|.++.++..+. ...+.+.....+|++++. ....+-||++||+.+.
T Consensus 244 MfIGdGAkLVRDAFaLAKEka-P~IIFIDElDAIGtKRfDSek~GDREVQRTMLELLNQLDGFss~~~vKviAATNRvDi 322 (424)
T KOG0652|consen 244 MFIGDGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKAGDREVQRTMLELLNQLDGFSSDDRVKVIAATNRVDI 322 (424)
T ss_pred hhhcchHHHHHHHHHHhhccC-CeEEEEechhhhccccccccccccHHHHHHHHHHHHhhcCCCCccceEEEeecccccc
Confidence 55677788899999998766 89999999999998886543 245677778888888863 4456899999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||++++ |+|..|+||.|+.+.|..|++.+..+... -+|..++.+|..|++|+
T Consensus 323 LDPALlRSGRLDRKIEfP~Pne~aRarIlQIHsRKMnv-------------------------~~DvNfeELaRsTddFN 377 (424)
T KOG0652|consen 323 LDPALLRSGRLDRKIEFPHPNEEARARILQIHSRKMNV-------------------------SDDVNFEELARSTDDFN 377 (424)
T ss_pred cCHHHhhcccccccccCCCCChHHHHHHHHHhhhhcCC-------------------------CCCCCHHHHhhcccccC
Confidence 9999998 99999999999999999999998876532 35567999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
|++..++|..+-.++...+...++-++|.+.+..+...
T Consensus 378 GAQcKAVcVEAGMiALRr~atev~heDfmegI~eVqak 415 (424)
T KOG0652|consen 378 GAQCKAVCVEAGMIALRRGATEVTHEDFMEGILEVQAK 415 (424)
T ss_pred chhheeeehhhhHHHHhcccccccHHHHHHHHHHHHHh
Confidence 99999999877777777777899999999998776543
No 27
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.95 E-value=1.7e-27 Score=248.60 Aligned_cols=212 Identities=26% Similarity=0.394 Sum_probs=180.9
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhh-----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cch
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKA-----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 309 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~-----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~ 309 (512)
..|+++-|..++++.+.+.+.....+.. +-+-..++|||||||||||++|.++|..++..|+.+.++++.+ +-+
T Consensus 664 i~w~digg~~~~k~~l~~~i~~P~kyp~if~~~plr~~~giLLyGppGcGKT~la~a~a~~~~~~fisvKGPElL~KyIG 743 (952)
T KOG0735|consen 664 IRWEDIGGLFEAKKVLEEVIEWPSKYPQIFANCPLRLRTGILLYGPPGCGKTLLASAIASNSNLRFISVKGPELLSKYIG 743 (952)
T ss_pred CCceecccHHHHHHHHHHHHhccccchHHHhhCCcccccceEEECCCCCcHHHHHHHHHhhCCeeEEEecCHHHHHHHhc
Confidence 5689999999999999988876543221 2233358999999999999999999999999999999999765 778
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCHHHH
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVA 387 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~al~ 387 (512)
.+++.++.+|..|...+ |||+|+||+|+++++|+... ......++|++|.+++ +.-.+|.|+++|.+|+.+||+++
T Consensus 744 aSEq~vR~lF~rA~~a~-PCiLFFDEfdSiAPkRGhDs-TGVTDRVVNQlLTelDG~Egl~GV~i~aaTsRpdliDpALL 821 (952)
T KOG0735|consen 744 ASEQNVRDLFERAQSAK-PCILFFDEFDSIAPKRGHDS-TGVTDRVVNQLLTELDGAEGLDGVYILAATSRPDLIDPALL 821 (952)
T ss_pred ccHHHHHHHHHHhhccC-CeEEEeccccccCcccCCCC-CCchHHHHHHHHHhhccccccceEEEEEecCCccccCHhhc
Confidence 89999999999999766 99999999999999998765 3356789999999996 44567999999999999999999
Q ss_pred c--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 388 D--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 388 ~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
| |+|..++-|.|+..+|.+|++...+.... -++.+++.+|.+|+||||+||..
T Consensus 822 RpGRlD~~v~C~~P~~~eRl~il~~ls~s~~~-------------------------~~~vdl~~~a~~T~g~tgADlq~ 876 (952)
T KOG0735|consen 822 RPGRLDKLVYCPLPDEPERLEILQVLSNSLLK-------------------------DTDVDLECLAQKTDGFTGADLQS 876 (952)
T ss_pred CCCccceeeeCCCCCcHHHHHHHHHHhhccCC-------------------------ccccchHHHhhhcCCCchhhHHH
Confidence 8 99999999999999999999988765422 35678999999999999999999
Q ss_pred HHHHHHHHH
Q 010366 466 LMASVQAAV 474 (512)
Q Consensus 466 lv~~~~aa~ 474 (512)
|+-.++.++
T Consensus 877 ll~~A~l~a 885 (952)
T KOG0735|consen 877 LLYNAQLAA 885 (952)
T ss_pred HHHHHHHHH
Confidence 995555443
No 28
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=99.95 E-value=7.3e-27 Score=241.47 Aligned_cols=237 Identities=25% Similarity=0.372 Sum_probs=188.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|...|+++.|.+..++.+...+... ..+ .. +..|++++|||||||||||++|+++|+.++.+++.+.++.+..
T Consensus 115 ~~p~~~~~di~Gl~~~~~~l~~~i~~~~~~~~~~~~~g~~~p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~~~~l~~ 194 (364)
T TIGR01242 115 ERPNVSYEDIGGLEEQIREIREAVELPLKHPELFEEVGIEPPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVGSELVR 194 (364)
T ss_pred cCCCCCHHHhCChHHHHHHHHHHHHHHhcCHHHHHhcCCCCCceEEEECCCCCCHHHHHHHHHHhCCCCEEecchHHHHH
Confidence 467778999999999999998766532 221 11 2356789999999999999999999999999999988766543
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~ 381 (512)
+.+.....+..+|..+.... |+||||||+|.++..+.... ........+..++..++. ...++.||+|||.++.
T Consensus 195 ~~~g~~~~~i~~~f~~a~~~~-p~il~iDEiD~l~~~~~~~~~~~~~~~~~~l~~ll~~ld~~~~~~~v~vI~ttn~~~~ 273 (364)
T TIGR01242 195 KYIGEGARLVREIFELAKEKA-PSIIFIDEIDAIAAKRTDSGTSGDREVQRTLMQLLAELDGFDPRGNVKVIAATNRPDI 273 (364)
T ss_pred HhhhHHHHHHHHHHHHHHhcC-CcEEEhhhhhhhccccccCCCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 34455667788888887654 79999999999987664332 234556677888877753 3468999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+++++++ ||+..|+|+.|+.++|..|++.++..... ..+..+..++..+.|||
T Consensus 274 ld~al~r~grfd~~i~v~~P~~~~r~~Il~~~~~~~~l-------------------------~~~~~~~~la~~t~g~s 328 (364)
T TIGR01242 274 LDPALLRPGRFDRIIEVPLPDFEGRLEILKIHTRKMKL-------------------------AEDVDLEAIAKMTEGAS 328 (364)
T ss_pred CChhhcCcccCceEEEeCCcCHHHHHHHHHHHHhcCCC-------------------------CccCCHHHHHHHcCCCC
Confidence 9999997 99999999999999999999988754321 12235889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
|+||..+|..+...+.......|+.+||.+|++.+
T Consensus 329 g~dl~~l~~~A~~~a~~~~~~~i~~~d~~~a~~~~ 363 (364)
T TIGR01242 329 GADLKAICTEAGMFAIREERDYVTMDDFIKAVEKV 363 (364)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCHHHHHHHHHHh
Confidence 99999999777666666666899999999999764
No 29
>PF12037 DUF3523: Domain of unknown function (DUF3523); InterPro: IPR021911 This presumed domain is functionally uncharacterised. This domain is found in eukaryotes. This domain is typically between 257 to 277 amino acids in length. This domain is found associated with PF00004 from PFAM. This domain has a conserved LER sequence motif.
Probab=99.94 E-value=7e-26 Score=216.74 Aligned_cols=167 Identities=56% Similarity=0.756 Sum_probs=163.9
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHhHHHHHHhhHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhHHHH
Q 010366 37 RHVYKFDWHLLQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHE 116 (512)
Q Consensus 37 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (512)
+.=|+|+|++|+.+++.++.+|++++++|++++.|||++|+.++++|+.+++++.+++++|++++++.+..+++++++..
T Consensus 110 qY~D~LaRkR~~~e~~~qr~~n~e~lk~QEes~~rqE~~Rr~Te~~i~~~r~~t~~~eaeL~~e~~~~k~~AEa~gra~~ 189 (276)
T PF12037_consen 110 QYEDELARKRYQDELEQQRRRNEELLKMQEESVIRQEQMRRATEEQILAQRRQTEEEEAELRRETERAKAEAEAEGRAKE 189 (276)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 44689999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh
Q 010366 117 AKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRIL 196 (512)
Q Consensus 117 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l 196 (512)
++.|.|+++.+++.++.+.|.+++++|+++|..++.++..+++|++.+..+|++++++|+|||+++.++.|+|.||+.+|
T Consensus 190 eReN~Di~l~~l~~ka~e~R~t~lesI~t~f~~lg~G~~~lltD~~kl~~~vgg~T~LA~GvYtar~gt~v~~~yie~rL 269 (276)
T PF12037_consen 190 ERENEDINLEQLRLKAEEERETVLESINTTFSHLGEGFRALLTDRDKLTTTVGGLTALAAGVYTAREGTRVAGRYIEARL 269 (276)
T ss_pred HHHhHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCccc
Q 010366 197 GQPSLIR 203 (512)
Q Consensus 197 ~~~~~~~ 203 (512)
|+||+|+
T Consensus 270 GkPsLVR 276 (276)
T PF12037_consen 270 GKPSLVR 276 (276)
T ss_pred CCCccCC
Confidence 9999875
No 30
>CHL00206 ycf2 Ycf2; Provisional
Probab=99.94 E-value=1.3e-26 Score=264.35 Aligned_cols=206 Identities=14% Similarity=0.165 Sum_probs=163.4
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC--------------------------------------
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL-------------------------------------- 307 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~-------------------------------------- 307 (512)
.||+|+||+||||||||++|+++|.+.+.||+.++++++...
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~fl~~~~~~~~~d~i~iges~~~~~~~~~~~~~~~e~~e~~n~ 1707 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNKFLDNKPKGFLIDDIDIDDSDDIDDSDDIDRDLDTELLTMMNA 1707 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHHHhhcccccccccccccccccccccccccccccchhhhhhcch
Confidence 678899999999999999999999999999999998776521
Q ss_pred ----chhHHH--HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-----CCCCEEEEEee
Q 010366 308 ----GPQAVT--KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----QSKDIVLALAT 376 (512)
Q Consensus 308 ----~~~~~~--~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----~~~~viiI~tt 376 (512)
.+.+.. .++.+|+.|+... ||||||||||.++.... ....++.|+..++. ...+|+||+||
T Consensus 1708 ~~~~m~~~e~~~rIr~lFelARk~S-PCIIFIDEIDaL~~~ds-------~~ltL~qLLneLDg~~~~~s~~~VIVIAAT 1779 (2281)
T CHL00206 1708 LTMDMMPKIDRFYITLQFELAKAMS-PCIIWIPNIHDLNVNES-------NYLSLGLLVNSLSRDCERCSTRNILVIAST 1779 (2281)
T ss_pred hhhhhhhhhhHHHHHHHHHHHHHCC-CeEEEEEchhhcCCCcc-------ceehHHHHHHHhccccccCCCCCEEEEEeC
Confidence 011122 3788999999877 89999999999976421 11246777777752 24579999999
Q ss_pred CCCCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH
Q 010366 377 NRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 454 (512)
Q Consensus 377 N~~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 454 (512)
|.|+.+|||+++ |||..|.++.|+..+|.+++...+...... +. -...+++.+|..
T Consensus 1780 NRPD~LDPALLRPGRFDR~I~Ir~Pd~p~R~kiL~ILl~tkg~~---------------------L~-~~~vdl~~LA~~ 1837 (2281)
T CHL00206 1780 HIPQKVDPALIAPNKLNTCIKIRRLLIPQQRKHFFTLSYTRGFH---------------------LE-KKMFHTNGFGSI 1837 (2281)
T ss_pred CCcccCCHhHcCCCCCCeEEEeCCCCchhHHHHHHHHHhhcCCC---------------------CC-cccccHHHHHHh
Confidence 999999999998 999999999999999999887654221110 00 111348899999
Q ss_pred cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHH
Q 010366 455 TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQR 501 (512)
Q Consensus 455 t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~~ 501 (512)
|.||||+||.+||+.|...+...+...|+.++++.|++........+
T Consensus 1838 T~GfSGADLanLvNEAaliAirq~ks~Id~~~I~~Al~Rq~~g~~~~ 1884 (2281)
T CHL00206 1838 TMGSNARDLVALTNEALSISITQKKSIIDTNTIRSALHRQTWDLRSQ 1884 (2281)
T ss_pred CCCCCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHHhhhhhc
Confidence 99999999999998777777777778999999999999988776544
No 31
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=99.94 E-value=3.2e-26 Score=251.48 Aligned_cols=237 Identities=25% Similarity=0.349 Sum_probs=192.1
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cch
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 309 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~ 309 (512)
...|.++.|.+..+..+.++......+.. ....+++++|+||||||||++++++|.+++.+|+.++++++.. +.+
T Consensus 148 ~~~~~di~g~~~~~~~l~~i~~~~~~~~~~~~~~~~~~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~~~~~~~~~g 227 (644)
T PRK10733 148 KTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEMFVG 227 (644)
T ss_pred hCcHHHHcCHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEehHHhHHhhhc
Confidence 44589999999999999888776543221 2345678999999999999999999999999999999987754 334
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCCCHH
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDSA 385 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l~~a 385 (512)
.....++.+|..+.... ||||||||+|.++..+... +.......+++.+|..++. ...++++|+|||.++.+|++
T Consensus 228 ~~~~~~~~~f~~a~~~~-P~IifIDEiD~l~~~r~~~~~g~~~~~~~~ln~lL~~mdg~~~~~~vivIaaTN~p~~lD~A 306 (644)
T PRK10733 228 VGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVLDPA 306 (644)
T ss_pred ccHHHHHHHHHHHHhcC-CcEEEehhHhhhhhccCCCCCCCchHHHHHHHHHHHhhhcccCCCCeeEEEecCChhhcCHH
Confidence 55667888999887655 8999999999998877542 2345566789999988863 34579999999999999999
Q ss_pred HHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHH
Q 010366 386 VAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 463 (512)
Q Consensus 386 l~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI 463 (512)
+++ ||+..+.|+.|+.++|.+|++.++..... ..+.++..+|..+.||||+||
T Consensus 307 l~RpgRfdr~i~v~~Pd~~~R~~Il~~~~~~~~l-------------------------~~~~d~~~la~~t~G~sgadl 361 (644)
T PRK10733 307 LLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-------------------------APDIDAAIIARGTPGFSGADL 361 (644)
T ss_pred HhCCcccceEEEcCCCCHHHHHHHHHHHhhcCCC-------------------------CCcCCHHHHHhhCCCCCHHHH
Confidence 997 99999999999999999999999866421 123347789999999999999
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 464 AKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 464 ~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
.++|+.+...+...+...|+.+++.+|++.....
T Consensus 362 ~~l~~eAa~~a~r~~~~~i~~~d~~~a~~~v~~g 395 (644)
T PRK10733 362 ANLVNEAALFAARGNKRVVSMVEFEKAKDKIMMG 395 (644)
T ss_pred HHHHHHHHHHHHHcCCCcccHHHHHHHHHHHhcc
Confidence 9999766655555666899999999999876543
No 32
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=99.94 E-value=1.7e-25 Score=235.95 Aligned_cols=252 Identities=19% Similarity=0.274 Sum_probs=180.2
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHh-hc---hhh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGAT-AN---TKA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~---~~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------- 295 (512)
...|..+|++|.|.+..++.+...+... .. ... +-.|++++|||||||||||++|+++|+.++.+
T Consensus 174 ~~~p~v~~~dIgGl~~~i~~i~~~v~lp~~~~~l~~~~gl~~p~GILLyGPPGTGKT~LAKAlA~eL~~~i~~~~~~~~~ 253 (512)
T TIGR03689 174 EEVPDVTYADIGGLDSQIEQIRDAVELPFLHPELYREYDLKPPKGVLLYGPPGCGKTLIAKAVANSLAQRIGAETGDKSY 253 (512)
T ss_pred ecCCCCCHHHcCChHHHHHHHHHHHHHHhhCHHHHHhccCCCCcceEEECCCCCcHHHHHHHHHHhhccccccccCCcee
Confidence 3567888999999999999997765432 11 122 23577899999999999999999999998654
Q ss_pred eEEEeCCCCC-CCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC--CCCC
Q 010366 296 YALMTGGDVA-PLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKD 369 (512)
Q Consensus 296 ~~~v~~~~~~-~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~ 369 (512)
|+.+.++++. .+.+++...++.+|..+... ..|+||||||+|.++..++....+.....+++.||..++. ...+
T Consensus 254 fl~v~~~eLl~kyvGete~~ir~iF~~Ar~~a~~g~p~IIfIDEiD~L~~~R~~~~s~d~e~~il~~LL~~LDgl~~~~~ 333 (512)
T TIGR03689 254 FLNIKGPELLNKYVGETERQIRLIFQRAREKASDGRPVIVFFDEMDSIFRTRGSGVSSDVETTVVPQLLSELDGVESLDN 333 (512)
T ss_pred EEeccchhhcccccchHHHHHHHHHHHHHHHhhcCCCceEEEehhhhhhcccCCCccchHHHHHHHHHHHHhcccccCCc
Confidence 4444555543 35667788889999888753 2589999999999998876544444556778888888763 3367
Q ss_pred EEEEEeeCCCCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHH
Q 010366 370 IVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 447 (512)
Q Consensus 370 viiI~ttN~~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
++||+|||.++.+||+++| |||..|+|++|+.++|.+|++.++...... +..+.. ........
T Consensus 334 ViVI~ATN~~d~LDpALlRpGRfD~~I~~~~Pd~e~r~~Il~~~l~~~l~l-----~~~l~~----------~~g~~~a~ 398 (512)
T TIGR03689 334 VIVIGASNREDMIDPAILRPGRLDVKIRIERPDAEAAADIFSKYLTDSLPL-----DADLAE----------FDGDREAT 398 (512)
T ss_pred eEEEeccCChhhCCHhhcCccccceEEEeCCCCHHHHHHHHHHHhhccCCc-----hHHHHH----------hcCCCHHH
Confidence 9999999999999999998 999999999999999999999998642110 000000 00011111
Q ss_pred HHHH-----------------------------HHHcCCCcHHHHHHHHHHHHHHHh----CCCCCccCHHHHHHHHHHH
Q 010366 448 LMEA-----------------------------AAKTEGFSGREIAKLMASVQAAVY----GSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 448 l~~l-----------------------------a~~t~g~s~~dI~~lv~~~~aa~~----~~~~~~it~e~~~~al~~~ 494 (512)
+..+ ...++.+||++|..+|..+...+. ......|+.+|+..|+..-
T Consensus 399 ~~al~~~av~~~~a~~~~~~~l~~~~~~g~~~~l~~~d~~sGa~i~~iv~~a~~~ai~~~~~~~~~~~~~~~l~~a~~~e 478 (512)
T TIGR03689 399 AAALIQRAVDHLYATSEENRYVEVTYANGSTEVLYFKDFVSGAMIANIVDRAKKRAIKDHITGGQVGLRIEHLLAAVLDE 478 (512)
T ss_pred HHHHHHHHHHHHhhhhcccceeEEEecCCceeeEeecccccHHHHHHHHHHHHHHHHHHHHhcCCcCcCHHHHHHHHHHh
Confidence 1111 112467899999999965554333 2334689999999998765
Q ss_pred HHH
Q 010366 495 VAE 497 (512)
Q Consensus 495 ~~~ 497 (512)
..+
T Consensus 479 ~~~ 481 (512)
T TIGR03689 479 FRE 481 (512)
T ss_pred hcc
Confidence 433
No 33
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.94 E-value=3.7e-25 Score=239.66 Aligned_cols=218 Identities=21% Similarity=0.294 Sum_probs=168.6
Q ss_pred hhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHH-HHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 215 LFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 215 ~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~-~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+.......|.++...+ -+.|+||++++..+.. +..+.++...++.|.++|||.||+|+|||.+|++||..+.
T Consensus 474 l~~~e~~kll~le~~L-------~~rViGQd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lf 546 (786)
T COG0542 474 LLEDEKEKLLNLERRL-------KKRVIGQDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALF 546 (786)
T ss_pred hchhhHHHHHHHHHHH-------hcceeChHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhc
Confidence 3334444555444443 5899999999999955 6666677888999999999999999999999999999997
Q ss_pred ---CCeEEEeCCCCC-----------CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHH
Q 010366 294 ---LDYALMTGGDVA-----------PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL 359 (512)
Q Consensus 294 ---~~~~~v~~~~~~-----------~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~l 359 (512)
..++.+++|++. +.|+-+... ...+..+.+.+||+||+||||++ +++.++|.|
T Consensus 547 g~e~aliR~DMSEy~EkHsVSrLIGaPPGYVGyee-GG~LTEaVRr~PySViLlDEIEK------------AHpdV~nil 613 (786)
T COG0542 547 GDEQALIRIDMSEYMEKHSVSRLIGAPPGYVGYEE-GGQLTEAVRRKPYSVILLDEIEK------------AHPDVFNLL 613 (786)
T ss_pred CCCccceeechHHHHHHHHHHHHhCCCCCCceecc-ccchhHhhhcCCCeEEEechhhh------------cCHHHHHHH
Confidence 789999998872 222222223 34555666778899999999999 789999999
Q ss_pred HHHcCC-----------CCCCEEEEEeeCCC----------------------------CCCCHHHHccccceeecCCCC
Q 010366 360 LFRTGD-----------QSKDIVLALATNRP----------------------------GDLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 360 l~~~~~-----------~~~~viiI~ttN~~----------------------------~~l~~al~~R~~~~i~~~~p~ 400 (512)
|+.+++ ++.|++||||||.. ..+.|+|++|+|.+|.|.+.+
T Consensus 614 LQVlDdGrLTD~~Gr~VdFrNtiIImTSN~Gs~~i~~~~~~~~~~~~~~~~~~v~~~l~~~F~PEFLNRid~II~F~~L~ 693 (786)
T COG0542 614 LQVLDDGRLTDGQGRTVDFRNTIIIMTSNAGSEEILRDADGDDFADKEALKEAVMEELKKHFRPEFLNRIDEIIPFNPLS 693 (786)
T ss_pred HHHhcCCeeecCCCCEEecceeEEEEecccchHHHHhhccccccchhhhHHHHHHHHHHhhCCHHHHhhcccEEeccCCC
Confidence 999874 56789999999962 135799999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC--CCcHHHHHHHH
Q 010366 401 QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSGREIAKLM 467 (512)
Q Consensus 401 ~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--g~s~~dI~~lv 467 (512)
.+...+|+...+..+... +. ..++.+ .+++++.+.|+.... .|.+|-+..++
T Consensus 694 ~~~l~~Iv~~~L~~l~~~------------L~--~~~i~l-~~s~~a~~~l~~~gyd~~~GARpL~R~I 747 (786)
T COG0542 694 KEVLERIVDLQLNRLAKR------------LA--ERGITL-ELSDEAKDFLAEKGYDPEYGARPLRRAI 747 (786)
T ss_pred HHHHHHHHHHHHHHHHHH------------HH--hCCceE-EECHHHHHHHHHhccCCCcCchHHHHHH
Confidence 999999999999886533 22 112222 388999999998853 45667777776
No 34
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.92 E-value=7.2e-25 Score=223.31 Aligned_cols=240 Identities=25% Similarity=0.369 Sum_probs=191.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhc----hhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATAN----TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~----~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..+...|+++.|...+++.+...+..... ...-..|++++||.||||||||+|++++|.+.+..|+.++++.+.+
T Consensus 146 ~~~~v~~~di~gl~~~k~~l~e~vi~p~lr~d~F~glr~p~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSassLtsK 225 (428)
T KOG0740|consen 146 TLRNVGWDDIAGLEDAKQSLKEAVILPLLRPDLFLGLREPVRGLLLFGPPGTGKTMLAKAIATESGATFFNISASSLTSK 225 (428)
T ss_pred cCCcccccCCcchhhHHHHhhhhhhhcccchHhhhccccccchhheecCCCCchHHHHHHHHhhhcceEeeccHHHhhhh
Confidence 45567799999999999999775544322 1223367789999999999999999999999999999999999876
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----CCCCCEEEEEeeCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~viiI~ttN~~~~l 382 (512)
+.++++..++.+|..|+... |+|+||||+|.++.++.... .+..+.....+|...+ ....+|+||+|||.|+.+
T Consensus 226 ~~Ge~eK~vralf~vAr~~q-PsvifidEidslls~Rs~~e-~e~srr~ktefLiq~~~~~s~~~drvlvigaTN~P~e~ 303 (428)
T KOG0740|consen 226 YVGESEKLVRALFKVARSLQ-PSVIFIDEIDSLLSKRSDNE-HESSRRLKTEFLLQFDGKNSAPDDRVLVIGATNRPWEL 303 (428)
T ss_pred ccChHHHHHHHHHHHHHhcC-CeEEEechhHHHHhhcCCcc-cccchhhhhHHHhhhccccCCCCCeEEEEecCCCchHH
Confidence 77788899999999998766 89999999999999994433 3344444444444432 345589999999999999
Q ss_pred CHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 383 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 383 ~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
|.++++||...+++|+|+.+.|..+|...+.+.. ..+.+.++..|+..|+|||+.|
T Consensus 304 Dea~~Rrf~kr~yiplPd~etr~~~~~~ll~~~~------------------------~~l~~~d~~~l~~~Tegysgsd 359 (428)
T KOG0740|consen 304 DEAARRRFVKRLYIPLPDYETRSLLWKQLLKEQP------------------------NGLSDLDISLLAKVTEGYSGSD 359 (428)
T ss_pred HHHHHHHhhceeeecCCCHHHHHHHHHHHHHhCC------------------------CCccHHHHHHHHHHhcCccccc
Confidence 9999999999999999999999999999998752 2378889999999999999999
Q ss_pred HHHHHHHHHHHHh-------------CCCCCccCHHHHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVY-------------GSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 463 I~~lv~~~~aa~~-------------~~~~~~it~e~~~~al~~~~~~ 497 (512)
|..+|..+...-. ......++..+|..++......
T Consensus 360 i~~l~kea~~~p~r~~~~~~~~~~~~~~~~r~i~~~df~~a~~~i~~~ 407 (428)
T KOG0740|consen 360 ITALCKEAAMGPLRELGGTTDLEFIDADKIRPITYPDFKNAFKNIKPS 407 (428)
T ss_pred HHHHHHHhhcCchhhcccchhhhhcchhccCCCCcchHHHHHHhhccc
Confidence 9999954432211 1222567888888888776543
No 35
>PLN00020 ribulose bisphosphate carboxylase/oxygenase activase -RuBisCO activase (RCA); Provisional
Probab=99.92 E-value=5.2e-24 Score=211.97 Aligned_cols=165 Identities=16% Similarity=0.209 Sum_probs=136.7
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHh----cCCCcEEEEccchhh
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKK----SKRGLLLFIDEADAF 339 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~~~~~~l~~lf~~a~~----~~~~~vl~lDEid~l 339 (512)
-.||.+++||||||||||++|+++|.+++.+++.++++++.+ +.+++++.++.+|..|.. ...||||||||||.+
T Consensus 145 ik~PlgllL~GPPGcGKTllAraiA~elg~~~i~vsa~eL~sk~vGEsEk~IR~~F~~A~~~a~~~~aPcVLFIDEIDA~ 224 (413)
T PLN00020 145 IKVPLILGIWGGKGQGKSFQCELVFKKMGIEPIVMSAGELESENAGEPGKLIRQRYREAADIIKKKGKMSCLFINDLDAG 224 (413)
T ss_pred CCCCeEEEeeCCCCCCHHHHHHHHHHHcCCCeEEEEHHHhhcCcCCcHHHHHHHHHHHHHHHhhccCCCeEEEEehhhhc
Confidence 367789999999999999999999999999999999998765 889999999999999875 346899999999999
Q ss_pred hhhcccCCCCHHHHHHHHHHHHHcC--------------CCCCCEEEEEeeCCCCCCCHHHHc--cccceeecCCCCHHH
Q 010366 340 LCERNKTYMSEAQRSALNALLFRTG--------------DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEE 403 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~ll~~~~--------------~~~~~viiI~ttN~~~~l~~al~~--R~~~~i~~~~p~~~e 403 (512)
++.++........+.+...|+..++ +....+.||+|||.|+.|+|+|+| |||..+ ..|+.++
T Consensus 225 ~g~r~~~~~tv~~qiV~~tLLnl~D~p~~v~l~G~w~~~~~~~~V~VIaTTNrpd~LDpALlRpGRfDk~i--~lPd~e~ 302 (413)
T PLN00020 225 AGRFGTTQYTVNNQMVNGTLMNIADNPTNVSLGGDWREKEEIPRVPIIVTGNDFSTLYAPLIRDGRMEKFY--WAPTRED 302 (413)
T ss_pred CCCCCCCCcchHHHHHHHHHHHHhcCCccccccccccccccCCCceEEEeCCCcccCCHhHcCCCCCCcee--CCCCHHH
Confidence 9988644323233444467776654 234569999999999999999999 998864 5899999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 404 RFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 404 r~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
|..|++.++... .++..++..|+..+.|
T Consensus 303 R~eIL~~~~r~~--------------------------~l~~~dv~~Lv~~f~g 330 (413)
T PLN00020 303 RIGVVHGIFRDD--------------------------GVSREDVVKLVDTFPG 330 (413)
T ss_pred HHHHHHHHhccC--------------------------CCCHHHHHHHHHcCCC
Confidence 999999988763 2667778888888766
No 36
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.91 E-value=8.4e-22 Score=222.52 Aligned_cols=363 Identities=16% Similarity=0.177 Sum_probs=218.8
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHhHHHHHHhhHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhHHHH
Q 010366 37 RHVYKFDWHLLQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHE 116 (512)
Q Consensus 37 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (512)
..|+.+++++.+++.+.+.+.++.+...+.+. ...++...+++.++..++.+|..++.++....+.....++.+.++.+
T Consensus 410 ~~L~rLer~l~~L~~E~e~l~~e~~~~~~~~~-~~l~~~l~~lq~e~~~L~eq~k~~k~el~~~~~~~~ele~l~~kie~ 488 (857)
T PRK10865 410 EELDRLDRRIIQLKLEQQALMKESDEASKKRL-DMLNEELSDKERQYSELEEEWKAEKASLSGTQTIKAELEQAKIAIEQ 488 (857)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 45799999999999999988776432211111 11122224455667777788887777776655555555555555555
Q ss_pred HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh
Q 010366 117 AKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRIL 196 (512)
Q Consensus 117 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l 196 (512)
..++.+.... .+..+..++.+...+........ .+...+. ..-+...+..+|.++.
T Consensus 489 a~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~---------------~~v~~~~i~~vv~~~t 544 (857)
T PRK10865 489 ARRVGDLARM------SELQYGKIPELEKQLAAATQLEG---KTMRLLR---------------NKVTDAEIAEVLARWT 544 (857)
T ss_pred HHhhhhhhhH------HHhhhhhhHHHHHHHHHHHhhhc---ccccccc---------------CccCHHHHHHHHHHHH
Confidence 5444443322 22233333333332221111000 0000000 0112345566677777
Q ss_pred CCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHh-hchhhcCCCCcceEEec
Q 010366 197 GQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGAT-ANTKAHNAPFRNMLFYG 275 (512)
Q Consensus 197 ~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~~~~~~p~~~vLL~G 275 (512)
|.|. ..+.......|.++...+ ++.++|++.++..+...+... .....++.|..++||+|
T Consensus 545 gip~------------~~~~~~~~~~l~~l~~~l-------~~~viGQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~Lf~G 605 (857)
T PRK10865 545 GIPV------------SRMLESEREKLLRMEQEL-------HHRVIGQNEAVEAVSNAIRRSRAGLSDPNRPIGSFLFLG 605 (857)
T ss_pred CCCc------------hhhhhhHHHHHHHHHHHh-------CCeEeCCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEC
Confidence 7764 233333444444444333 689999999999997766544 33444556667899999
Q ss_pred CCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCch-----------hHHHHHHHHHHHHHhcCCCcEEEEccchhhhh
Q 010366 276 PPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP-----------QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 276 ppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~-----------~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~ 341 (512)
|||||||++|++||..+ +.+++.++++.+..... .+... ...+..+.+..+++||||||++++
T Consensus 606 p~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~~~~~~LiG~~pgy~g~~~-~g~l~~~v~~~p~~vLllDEieka-- 682 (857)
T PRK10865 606 PTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEKHSVSRLVGAPPGYVGYEE-GGYLTEAVRRRPYSVILLDEVEKA-- 682 (857)
T ss_pred CCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhhhhHHHHhCCCCcccccch-hHHHHHHHHhCCCCeEEEeehhhC--
Confidence 99999999999999987 35788898877643110 00011 122334444566899999999985
Q ss_pred hcccCCCCHHHHHHHHHHHHHc---C-----CCCCCEEEEEeeCCC-------------------------CCCCHHHHc
Q 010366 342 ERNKTYMSEAQRSALNALLFRT---G-----DQSKDIVLALATNRP-------------------------GDLDSAVAD 388 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~---~-----~~~~~viiI~ttN~~-------------------------~~l~~al~~ 388 (512)
+......|..++..- + -+..+++||+|||.. ..+.|+|++
T Consensus 683 -------~~~v~~~Ll~ile~g~l~d~~gr~vd~rn~iiI~TSN~g~~~~~~~~~~~~~~~~~~~~~~~~~~~f~PELln 755 (857)
T PRK10865 683 -------HPDVFNILLQVLDDGRLTDGQGRTVDFRNTVVIMTSNLGSDLIQERFGELDYAHMKELVLGVVSHNFRPEFIN 755 (857)
T ss_pred -------CHHHHHHHHHHHhhCceecCCceEEeecccEEEEeCCcchHHHHHhccccchHHHHHHHHHHHcccccHHHHH
Confidence 334444444444321 0 124567899999973 246789999
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC--CCcHHHHHHH
Q 010366 389 RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSGREIAKL 466 (512)
Q Consensus 389 R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--g~s~~dI~~l 466 (512)
|++.++.|.+++.++...|++.++...... ++ ..++.+ .+++++++.|+.+.. .|..|.|..+
T Consensus 756 Rld~iivF~PL~~edl~~Iv~~~L~~l~~r------------l~--~~gi~l-~is~~al~~L~~~gy~~~~GARpL~r~ 820 (857)
T PRK10865 756 RIDEVVVFHPLGEQHIASIAQIQLQRLYKR------------LE--ERGYEI-HISDEALKLLSENGYDPVYGARPLKRA 820 (857)
T ss_pred hCCeeEecCCCCHHHHHHHHHHHHHHHHHH------------HH--hCCCcC-cCCHHHHHHHHHcCCCccCChHHHHHH
Confidence 999999999999999999999999875321 11 011222 489999999997632 2346788887
Q ss_pred HH
Q 010366 467 MA 468 (512)
Q Consensus 467 v~ 468 (512)
+.
T Consensus 821 I~ 822 (857)
T PRK10865 821 IQ 822 (857)
T ss_pred HH
Confidence 73
No 37
>KOG0651 consensus 26S proteasome regulatory complex, ATPase RPT4 [Posttranslational modification, protein turnover, chaperones]
Probab=99.91 E-value=4.7e-24 Score=204.79 Aligned_cols=234 Identities=24% Similarity=0.339 Sum_probs=181.2
Q ss_pred CCCCccccChHHHHHHHHHHHHh-hc----hhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cch
Q 010366 236 NGFGDVILHPSLQKRIRQLSGAT-AN----TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 309 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~-~~----~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~ 309 (512)
.+|+++-|.-.....+++.+... .+ +..+-.||.+++||||||||||.+|+++|..++.+|+.+..+.+.+ +.+
T Consensus 129 ~s~~~~ggl~~qirelre~ielpl~np~lf~rvgIk~Pkg~ll~GppGtGKTlla~~Vaa~mg~nfl~v~ss~lv~kyiG 208 (388)
T KOG0651|consen 129 ISFENVGGLFYQIRELREVIELPLTNPELFLRVGIKPPKGLLLYGPPGTGKTLLARAVAATMGVNFLKVVSSALVDKYIG 208 (388)
T ss_pred cCHHHhCChHHHHHHHHhheEeeccCchhccccCCCCCceeEEeCCCCCchhHHHHHHHHhcCCceEEeeHhhhhhhhcc
Confidence 46888888777777776543321 11 2224478899999999999999999999999999999999888765 788
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC--CHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCHH
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSA 385 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~a 385 (512)
++.+.+++.|..|+... |||||+||||.+++.+.+... ....+.+|-.++++++ +....|-+|+|||.|+.|+|+
T Consensus 209 EsaRlIRemf~yA~~~~-pciifmdeiDAigGRr~se~Ts~dreiqrTLMeLlnqmdgfd~l~rVk~ImatNrpdtLdpa 287 (388)
T KOG0651|consen 209 ESARLIRDMFRYAREVI-PCIIFMDEIDAIGGRRFSEGTSSDREIQRTLMELLNQMDGFDTLHRVKTIMATNRPDTLDPA 287 (388)
T ss_pred cHHHHHHHHHHHHhhhC-ceEEeehhhhhhccEEeccccchhHHHHHHHHHHHHhhccchhcccccEEEecCCccccchh
Confidence 89999999999999877 799999999999888754432 3455667777777775 345679999999999999999
Q ss_pred HHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHH
Q 010366 386 VAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 463 (512)
Q Consensus 386 l~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI 463 (512)
|++ |++..+.+|.|+...|..|++.+...... +.+-..+.+...++||.|.|+
T Consensus 288 LlRpGRldrk~~iPlpne~~r~~I~Kih~~~i~~-------------------------~Geid~eaivK~~d~f~gad~ 342 (388)
T KOG0651|consen 288 LLRPGRLDRKVEIPLPNEQARLGILKIHVQPIDF-------------------------HGEIDDEAILKLVDGFNGADL 342 (388)
T ss_pred hcCCccccceeccCCcchhhceeeEeeccccccc-------------------------cccccHHHHHHHHhccChHHH
Confidence 998 99999999999999999988776554322 222236667777899999999
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 464 AKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 464 ~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
.+.|..+-.-+.......+-.+++..++....
T Consensus 343 rn~~tEag~Fa~~~~~~~vl~Ed~~k~vrk~~ 374 (388)
T KOG0651|consen 343 RNVCTEAGMFAIPEERDEVLHEDFMKLVRKQA 374 (388)
T ss_pred hhhcccccccccchhhHHHhHHHHHHHHHHHH
Confidence 99996555444444445666777777775543
No 38
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.90 E-value=2e-24 Score=219.36 Aligned_cols=210 Identities=26% Similarity=0.385 Sum_probs=175.8
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhC-CCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCC-------CcEEEEccchh
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSG-LDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKR-------GLLLFIDEADA 338 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~-~~~~~v~~~~~~~-~~~~~~~~l~~lf~~a~~~~~-------~~vl~lDEid~ 338 (512)
.+++|||||||||||.+||.|..-++ .+.-.+|++++.+ +.++++++++.+|..|...-+ --||++||+|.
T Consensus 256 VKGiLLyGPPGTGKTLiARqIGkMLNArePKIVNGPeIL~KYVGeSE~NvR~LFaDAEeE~r~~g~~SgLHIIIFDEiDA 335 (744)
T KOG0741|consen 256 VKGILLYGPPGTGKTLIARQIGKMLNAREPKIVNGPEILNKYVGESEENVRKLFADAEEEQRRLGANSGLHIIIFDEIDA 335 (744)
T ss_pred eeeEEEECCCCCChhHHHHHHHHHhcCCCCcccCcHHHHHHhhcccHHHHHHHHHhHHHHHHhhCccCCceEEEehhhHH
Confidence 36899999999999999999999987 5677889988766 889999999999998764211 23999999999
Q ss_pred hhhhcccCCC-CHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHH
Q 010366 339 FLCERNKTYM-SEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLD 413 (512)
Q Consensus 339 l~~~~~~~~~-~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~ 413 (512)
++.+|++... +..+..++|+||..++ +.-.|+++|+-||+.+.+|.+++| ||...+++..|+..-|.+|++.+..
T Consensus 336 ICKqRGS~~g~TGVhD~VVNQLLsKmDGVeqLNNILVIGMTNR~DlIDEALLRPGRlEVqmEIsLPDE~gRlQIl~IHT~ 415 (744)
T KOG0741|consen 336 ICKQRGSMAGSTGVHDTVVNQLLSKMDGVEQLNNILVIGMTNRKDLIDEALLRPGRLEVQMEISLPDEKGRLQILKIHTK 415 (744)
T ss_pred HHHhcCCCCCCCCccHHHHHHHHHhcccHHhhhcEEEEeccCchhhHHHHhcCCCceEEEEEEeCCCccCceEEEEhhhh
Confidence 9999987554 5567889999999986 566789999999999999999999 9999999999999999999999987
Q ss_pred HHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCC---------------
Q 010366 414 KYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSE--------------- 478 (512)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~--------------- 478 (512)
+....+. .-++.++..||..|..|||++|+.++.++++.+..+.
T Consensus 416 rMre~~~---------------------l~~dVdl~elA~lTKNfSGAEleglVksA~S~A~nR~vk~~~~~~~~~~~~e 474 (744)
T KOG0741|consen 416 RMRENNK---------------------LSADVDLKELAALTKNFSGAELEGLVKSAQSFAMNRHVKAGGKVEVDPVAIE 474 (744)
T ss_pred hhhhcCC---------------------CCCCcCHHHHHHHhcCCchhHHHHHHHHHHHHHHHhhhccCcceecCchhhh
Confidence 7643321 1345679999999999999999999999988775431
Q ss_pred CCccCHHHHHHHHHHHHHHH
Q 010366 479 NCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 479 ~~~it~e~~~~al~~~~~~~ 498 (512)
.-.++.+||..|++...+.+
T Consensus 475 ~lkV~r~DFl~aL~dVkPAF 494 (744)
T KOG0741|consen 475 NLKVTRGDFLNALEDVKPAF 494 (744)
T ss_pred heeecHHHHHHHHHhcCccc
Confidence 13689999999998776544
No 39
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=99.90 E-value=1.3e-22 Score=227.33 Aligned_cols=238 Identities=24% Similarity=0.357 Sum_probs=182.1
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhh-ch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATA-NT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~-~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
.+..+|++|+|.+..++.+..++.... .+ .. +-.|++++|||||||||||++|+++|+.++.+++.++++++..
T Consensus 172 ~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~gi~~~~giLL~GppGtGKT~laraia~~~~~~~i~i~~~~i~~~ 251 (733)
T TIGR01243 172 VPKVTYEDIGGLKEAKEKIREMVELPMKHPELFEHLGIEPPKGVLLYGPPGTGKTLLAKAVANEAGAYFISINGPEIMSK 251 (733)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCceEEEECCCCCChHHHHHHHHHHhCCeEEEEecHHHhcc
Confidence 356789999999999999988775432 11 11 2256789999999999999999999999999999999887654
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCCCH
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDS 384 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l~~ 384 (512)
+.+.+...+..+|..+.... |+||||||+|.+++.+.... ......+++.|+..++. ....++||++||.++.+|+
T Consensus 252 ~~g~~~~~l~~lf~~a~~~~-p~il~iDEid~l~~~r~~~~-~~~~~~~~~~Ll~~ld~l~~~~~vivI~atn~~~~ld~ 329 (733)
T TIGR01243 252 YYGESEERLREIFKEAEENA-PSIIFIDEIDAIAPKREEVT-GEVEKRVVAQLLTLMDGLKGRGRVIVIGATNRPDALDP 329 (733)
T ss_pred cccHHHHHHHHHHHHHHhcC-CcEEEeehhhhhcccccCCc-chHHHHHHHHHHHHhhccccCCCEEEEeecCChhhcCH
Confidence 55667788999999988765 78999999999988765432 22334556666666642 3457889999999999999
Q ss_pred HHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++.+ ||+..+.++.|+.++|.+|++.+...... ..+..++.++..+.||+++|
T Consensus 330 al~r~gRfd~~i~i~~P~~~~R~~Il~~~~~~~~l-------------------------~~d~~l~~la~~t~G~~gad 384 (733)
T TIGR01243 330 ALRRPGRFDREIVIRVPDKRARKEILKVHTRNMPL-------------------------AEDVDLDKLAEVTHGFVGAD 384 (733)
T ss_pred HHhCchhccEEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------ccccCHHHHHHhCCCCCHHH
Confidence 9987 99999999999999999999976544211 23446889999999999999
Q ss_pred HHHHHHHHHHHHhC-------------------CCCCccCHHHHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYG-------------------SENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 463 I~~lv~~~~aa~~~-------------------~~~~~it~e~~~~al~~~~~~ 497 (512)
+..++..+...+.. .....++.++|..|+......
T Consensus 385 l~~l~~~a~~~al~r~~~~~~~~~~~~~i~~~~~~~~~v~~~df~~Al~~v~ps 438 (733)
T TIGR01243 385 LAALAKEAAMAALRRFIREGKINFEAEEIPAEVLKELKVTMKDFMEALKMVEPS 438 (733)
T ss_pred HHHHHHHHHHHHHHHHhhccccccccccccchhcccccccHHHHHHHHhhcccc
Confidence 99999543322211 012357888999888765543
No 40
>KOG0730 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.89 E-value=1.1e-22 Score=212.96 Aligned_cols=227 Identities=26% Similarity=0.370 Sum_probs=180.5
Q ss_pred CccccChHHHHHHHHHHHHhhc----h-hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCC-CCchhHH
Q 010366 239 GDVILHPSLQKRIRQLSGATAN----T-KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-PLGPQAV 312 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~----~-~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~-~~~~~~~ 312 (512)
.++.|.......++..+..... . ..+-.||+++|+|||||||||.+++++|++.+..++.++++.+. .+.+++.
T Consensus 184 ~~~gg~~~~~~~i~e~v~~pl~~~~~~~s~g~~~prg~Ll~gppg~Gkt~l~~aVa~e~~a~~~~i~~peli~k~~gEte 263 (693)
T KOG0730|consen 184 DDIGGLKRQLSVIRELVELPLRHPALFKSIGIKPPRGLLLYGPPGTGKTFLVRAVANEYGAFLFLINGPELISKFPGETE 263 (693)
T ss_pred cccchhHHHHHHHHHHHHhhhcchhhhhhcCCCCCCCccccCCCCCChHHHHHHHHHHhCceeEecccHHHHHhcccchH
Confidence 4666666666666665543322 1 12336789999999999999999999999999999999998765 4788999
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCCCHHHHc-c
Q 010366 313 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDSAVAD-R 389 (512)
Q Consensus 313 ~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l~~al~~-R 389 (512)
..++..|..+.....|+++||||+|.+++++..... ....+..+++..++. ...++++|++||+|+.+|++++| |
T Consensus 264 ~~LR~~f~~a~k~~~psii~IdEld~l~p~r~~~~~--~e~Rv~sqlltL~dg~~~~~~vivl~atnrp~sld~alRRgR 341 (693)
T KOG0730|consen 264 SNLRKAFAEALKFQVPSIIFIDELDALCPKREGADD--VESRVVSQLLTLLDGLKPDAKVIVLAATNRPDSLDPALRRGR 341 (693)
T ss_pred HHHHHHHHHHhccCCCeeEeHHhHhhhCCcccccch--HHHHHHHHHHHHHhhCcCcCcEEEEEecCCccccChhhhcCC
Confidence 999999999999887899999999999998877653 344455555544442 34789999999999999999998 9
Q ss_pred ccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHH
Q 010366 390 IDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMAS 469 (512)
Q Consensus 390 ~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~ 469 (512)
||..+.+..|+..+|.+|++.++..+. ..++..+..+|..+.||.|+|+..+|..
T Consensus 342 fd~ev~IgiP~~~~RldIl~~l~k~~~-------------------------~~~~~~l~~iA~~thGyvGaDL~~l~~e 396 (693)
T KOG0730|consen 342 FDREVEIGIPGSDGRLDILRVLTKKMN-------------------------LLSDVDLEDIAVSTHGYVGADLAALCRE 396 (693)
T ss_pred CcceeeecCCCchhHHHHHHHHHHhcC-------------------------CcchhhHHHHHHHccchhHHHHHHHHHH
Confidence 999999999999999999999987753 2457889999999999999999999965
Q ss_pred HHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 470 VQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 470 ~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
+...+... |.++|..|.......
T Consensus 397 a~~~~~r~-----~~~~~~~A~~~i~ps 419 (693)
T KOG0730|consen 397 ASLQATRR-----TLEIFQEALMGIRPS 419 (693)
T ss_pred HHHHHhhh-----hHHHHHHHHhcCCch
Confidence 54443322 667777776555443
No 41
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.89 E-value=9.8e-21 Score=214.67 Aligned_cols=238 Identities=21% Similarity=0.247 Sum_probs=162.4
Q ss_pred chHHHHHHHHHHhCCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHh-hchh
Q 010366 184 GAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGAT-ANTK 262 (512)
Q Consensus 184 ~~~~~~~~i~~~l~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~~ 262 (512)
+...+..+|.++.|.|. ..+.......|.++...+ ...|+|++.++..+...+... ....
T Consensus 529 ~~~~i~~v~~~~tgip~------------~~~~~~e~~~l~~l~~~l-------~~~v~GQ~~av~~v~~~i~~~~~gl~ 589 (852)
T TIGR03346 529 TAEEIAEVVSRWTGIPV------------SKMLEGEREKLLHMEEVL-------HERVVGQDEAVEAVSDAIRRSRAGLS 589 (852)
T ss_pred CHHHHHHHHHHhcCCCc------------ccccHHHHHHHHHHHHHh-------hcccCCChHHHHHHHHHHHHHhccCC
Confidence 34566777777777765 222223333343333322 478999999999997765544 3344
Q ss_pred hcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCch-----------hHHHHHHHHHHHHHhcCCC
Q 010366 263 AHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP-----------QAVTKIHQLFDWAKKSKRG 328 (512)
Q Consensus 263 ~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~-----------~~~~~l~~lf~~a~~~~~~ 328 (512)
.++.|..++||+||||||||++|++||..+ +.+++.++++.+..... .+..... .+..+.+..|+
T Consensus 590 ~~~~p~~~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~~~~~~l~g~~~g~~g~~~~g-~l~~~v~~~p~ 668 (852)
T TIGR03346 590 DPNRPIGSFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEKHSVARLIGAPPGYVGYEEGG-QLTEAVRRKPY 668 (852)
T ss_pred CCCCCCeEEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhcccchHHHhcCCCCCccCccccc-HHHHHHHcCCC
Confidence 556777789999999999999999999987 46899999887643110 0000111 23333344668
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-----------CCCCEEEEEeeCCCC-----------------
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRPG----------------- 380 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----------~~~~viiI~ttN~~~----------------- 380 (512)
+|||||||+++ + ..+.+.|++.+++ +..+++||+|||...
T Consensus 669 ~vlllDeieka---------~---~~v~~~Ll~~l~~g~l~d~~g~~vd~rn~iiI~TSn~g~~~~~~~~~~~~~~~~~~ 736 (852)
T TIGR03346 669 SVVLFDEVEKA---------H---PDVFNVLLQVLDDGRLTDGQGRTVDFRNTVIIMTSNLGSQFIQELAGGDDYEEMRE 736 (852)
T ss_pred cEEEEeccccC---------C---HHHHHHHHHHHhcCceecCCCeEEecCCcEEEEeCCcchHhHhhhcccccHHHHHH
Confidence 99999999985 3 3444555554432 246788999999822
Q ss_pred --------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHH
Q 010366 381 --------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAA 452 (512)
Q Consensus 381 --------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 452 (512)
.+.|+|++|++.++.|.+++.++..+|+...+...... +.. .++. ..+++++++.|+
T Consensus 737 ~~~~~~~~~F~pel~~Rid~IivF~PL~~e~l~~I~~l~L~~l~~~------------l~~--~~~~-l~i~~~a~~~L~ 801 (852)
T TIGR03346 737 AVMEVLRAHFRPEFLNRIDEIVVFHPLGREQIARIVEIQLGRLRKR------------LAE--RKIT-LELSDAALDFLA 801 (852)
T ss_pred HHHHHHHhhcCHHHhcCcCeEEecCCcCHHHHHHHHHHHHHHHHHH------------HHH--CCCe-ecCCHHHHHHHH
Confidence 25688999999999999999999999999988764321 111 1122 248999999999
Q ss_pred HHcC--CCcHHHHHHHHH
Q 010366 453 AKTE--GFSGREIAKLMA 468 (512)
Q Consensus 453 ~~t~--g~s~~dI~~lv~ 468 (512)
.... .+..|.|..++.
T Consensus 802 ~~~~~~~~gaR~L~~~i~ 819 (852)
T TIGR03346 802 EAGYDPVYGARPLKRAIQ 819 (852)
T ss_pred HhCCCCCCCchhHHHHHH
Confidence 9844 567889988884
No 42
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=99.89 E-value=6.7e-22 Score=185.33 Aligned_cols=193 Identities=28% Similarity=0.411 Sum_probs=133.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHH
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 312 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~ 312 (512)
..|.+|+++|||++++..+.-++... ...+.+..|+|||||||+||||+|+.+|++++.++..++++.+... +
T Consensus 18 lRP~~L~efiGQ~~l~~~l~i~i~aa---~~r~~~l~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~sg~~i~k~-~--- 90 (233)
T PF05496_consen 18 LRPKSLDEFIGQEHLKGNLKILIRAA---KKRGEALDHMLFYGPPGLGKTTLARIIANELGVNFKITSGPAIEKA-G--- 90 (233)
T ss_dssp TS-SSCCCS-S-HHHHHHHHHHHHHH---HCTTS---EEEEESSTTSSHHHHHHHHHHHCT--EEEEECCC--SC-H---
T ss_pred cCCCCHHHccCcHHHHhhhHHHHHHH---HhcCCCcceEEEECCCccchhHHHHHHHhccCCCeEeccchhhhhH-H---
Confidence 45667999999999999987766544 2234455699999999999999999999999999999988654322 1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc------CCC---------CCCEEEEEeeC
Q 010366 313 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT------GDQ---------SKDIVLALATN 377 (512)
Q Consensus 313 ~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~------~~~---------~~~viiI~ttN 377 (512)
.+..++... .++.|||||||+.| +...++.|...+... +.. -.++.+|++|+
T Consensus 91 -dl~~il~~l---~~~~ILFIDEIHRl---------nk~~qe~LlpamEd~~idiiiG~g~~ar~~~~~l~~FTligATT 157 (233)
T PF05496_consen 91 -DLAAILTNL---KEGDILFIDEIHRL---------NKAQQEILLPAMEDGKIDIIIGKGPNARSIRINLPPFTLIGATT 157 (233)
T ss_dssp -HHHHHHHT-----TT-EEEECTCCC-----------HHHHHHHHHHHHCSEEEEEBSSSSS-BEEEEE----EEEEEES
T ss_pred -HHHHHHHhc---CCCcEEEEechhhc---------cHHHHHHHHHHhccCeEEEEeccccccceeeccCCCceEeeeec
Confidence 222333322 34789999999997 556667776666531 111 13588999999
Q ss_pred CCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 378 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 378 ~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
....+.+++++||..+..+..|+.++...|++.....+... ++++....||.++.|
T Consensus 158 r~g~ls~pLrdRFgi~~~l~~Y~~~el~~Iv~r~a~~l~i~------------------------i~~~~~~~Ia~rsrG 213 (233)
T PF05496_consen 158 RAGLLSSPLRDRFGIVLRLEFYSEEELAKIVKRSARILNIE------------------------IDEDAAEEIARRSRG 213 (233)
T ss_dssp SGCCTSHCCCTTSSEEEE----THHHHHHHHHHCCHCTT-E------------------------E-HHHHHHHHHCTTT
T ss_pred cccccchhHHhhcceecchhcCCHHHHHHHHHHHHHHhCCC------------------------cCHHHHHHHHHhcCC
Confidence 99999999999998888999999999999999877665433 889999999999988
Q ss_pred CcHHHHHHHHHHH
Q 010366 458 FSGREIAKLMASV 470 (512)
Q Consensus 458 ~s~~dI~~lv~~~ 470 (512)
+||=-..|+..+
T Consensus 214 -tPRiAnrll~rv 225 (233)
T PF05496_consen 214 -TPRIANRLLRRV 225 (233)
T ss_dssp -SHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHH
Confidence 888777777554
No 43
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=99.87 E-value=7.5e-21 Score=181.30 Aligned_cols=217 Identities=20% Similarity=0.304 Sum_probs=174.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHH
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 312 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~ 312 (512)
..|..|+++||++.+++.+.-++.+. +..+.+..|+|||||||.||||+|..+|+++|.++...+++.+...+
T Consensus 20 lRP~~l~efiGQ~~vk~~L~ifI~AA---k~r~e~lDHvLl~GPPGlGKTTLA~IIA~Emgvn~k~tsGp~leK~g---- 92 (332)
T COG2255 20 LRPKTLDEFIGQEKVKEQLQIFIKAA---KKRGEALDHVLLFGPPGLGKTTLAHIIANELGVNLKITSGPALEKPG---- 92 (332)
T ss_pred cCcccHHHhcChHHHHHHHHHHHHHH---HhcCCCcCeEEeeCCCCCcHHHHHHHHHHHhcCCeEecccccccChh----
Confidence 34667999999999999998777554 44566778999999999999999999999999999988887665432
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC------C---------CCCCEEEEEeeC
Q 010366 313 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------D---------QSKDIVLALATN 377 (512)
Q Consensus 313 ~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------~---------~~~~viiI~ttN 377 (512)
.+-.++. ...+++|+|||||+.+ +....++|...+..+. . +-.++-+|++|.
T Consensus 93 -DlaaiLt---~Le~~DVLFIDEIHrl---------~~~vEE~LYpaMEDf~lDI~IG~gp~Arsv~ldLppFTLIGATT 159 (332)
T COG2255 93 -DLAAILT---NLEEGDVLFIDEIHRL---------SPAVEEVLYPAMEDFRLDIIIGKGPAARSIRLDLPPFTLIGATT 159 (332)
T ss_pred -hHHHHHh---cCCcCCeEEEehhhhc---------ChhHHHHhhhhhhheeEEEEEccCCccceEeccCCCeeEeeecc
Confidence 2222333 3356899999999998 4455566666555421 1 234688999999
Q ss_pred CCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 378 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 378 ~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
+...+...+.+||..+..+..|+.++...|+......+... ++++....||.++.|
T Consensus 160 r~G~lt~PLrdRFGi~~rlefY~~~eL~~Iv~r~a~~l~i~------------------------i~~~~a~eIA~rSRG 215 (332)
T COG2255 160 RAGMLTNPLRDRFGIIQRLEFYTVEELEEIVKRSAKILGIE------------------------IDEEAALEIARRSRG 215 (332)
T ss_pred ccccccchhHHhcCCeeeeecCCHHHHHHHHHHHHHHhCCC------------------------CChHHHHHHHHhccC
Confidence 99999999999999999999999999999999988766543 889999999999988
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 458 FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 458 ~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
+||=-..|+..+.-.+.-.+...|+.+...+|++..
T Consensus 216 -TPRIAnRLLrRVRDfa~V~~~~~I~~~ia~~aL~~L 251 (332)
T COG2255 216 -TPRIANRLLRRVRDFAQVKGDGDIDRDIADKALKML 251 (332)
T ss_pred -CcHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHHh
Confidence 888888888888877776667899999998888653
No 44
>COG0466 Lon ATP-dependent Lon protease, bacterial type [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=4.4e-20 Score=195.13 Aligned_cols=279 Identities=20% Similarity=0.230 Sum_probs=186.7
Q ss_pred hHHHHHHHHHHhCCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhc
Q 010366 185 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAH 264 (512)
Q Consensus 185 ~~~~~~~i~~~l~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~ 264 (512)
..++++|++..+..|-......... +.....-| =.+-.|.+.+++++.+++.........
T Consensus 289 ~~ViRnYlDwll~lPW~~~sk~~~D------l~~a~~iL--------------d~dHYGLekVKeRIlEyLAV~~l~~~~ 348 (782)
T COG0466 289 ATVIRNYLDWLLDLPWGKRSKDKLD------LKKAEKIL--------------DKDHYGLEKVKERILEYLAVQKLTKKL 348 (782)
T ss_pred HHHHHHHHHHHHhCCCccccchhhh------HHHHHHHh--------------cccccCchhHHHHHHHHHHHHHHhccC
Confidence 4588999999988764221111000 11111222 156678899999998877665544443
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC----------CchhHHHHHHHHHHHHHhcCCCcEEEEc
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------LGPQAVTKIHQLFDWAKKSKRGLLLFID 334 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~----------~~~~~~~~l~~lf~~a~~~~~~~vl~lD 334 (512)
..| -++|+||||+|||++++.+|+.++..|+.++.+.+.. +.+....++-+-...+...+ | +++||
T Consensus 349 kGp--ILcLVGPPGVGKTSLgkSIA~al~RkfvR~sLGGvrDEAEIRGHRRTYIGamPGrIiQ~mkka~~~N-P-v~LLD 424 (782)
T COG0466 349 KGP--ILCLVGPPGVGKTSLGKSIAKALGRKFVRISLGGVRDEAEIRGHRRTYIGAMPGKIIQGMKKAGVKN-P-VFLLD 424 (782)
T ss_pred CCc--EEEEECCCCCCchhHHHHHHHHhCCCEEEEecCccccHHHhccccccccccCChHHHHHHHHhCCcC-C-eEEee
Confidence 334 5899999999999999999999999999999766532 44555566666677777665 3 88999
Q ss_pred cchhhhhhcccCCCCHHHHHHH--------HHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHH
Q 010366 335 EADAFLCERNKTYMSEAQRSAL--------NALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 335 Eid~l~~~~~~~~~~~~~~~~l--------~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
|||++.+.-.+.. +++.-++| ....-.+.-+-++|+||+|+|..+.++.+|++|+ .+|.++-|+.+|...
T Consensus 425 EIDKm~ss~rGDP-aSALLEVLDPEQN~~F~DhYLev~yDLS~VmFiaTANsl~tIP~PLlDRM-EiI~lsgYt~~EKl~ 502 (782)
T COG0466 425 EIDKMGSSFRGDP-ASALLEVLDPEQNNTFSDHYLEVPYDLSKVMFIATANSLDTIPAPLLDRM-EVIRLSGYTEDEKLE 502 (782)
T ss_pred chhhccCCCCCCh-HHHHHhhcCHhhcCchhhccccCccchhheEEEeecCccccCChHHhcce-eeeeecCCChHHHHH
Confidence 9999976543332 22222211 1111112224467999999999999999999999 999999999999999
Q ss_pred HHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH-----HHHHHHHHHH-HHHHhCCCCC
Q 010366 407 LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG-----REIAKLMASV-QAAVYGSENC 480 (512)
Q Consensus 407 Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~-----~dI~~lv~~~-~aa~~~~~~~ 480 (512)
|.+.|+=..........+ .. -.++|+++..|.+.+..-+| ++|.++|+.+ .....+....
T Consensus 503 IAk~~LiPk~~~~~gL~~-----------~e---l~i~d~ai~~iI~~YTREAGVR~LeR~i~ki~RK~~~~i~~~~~k~ 568 (782)
T COG0466 503 IAKRHLIPKQLKEHGLKK-----------GE---LTITDEAIKDIIRYYTREAGVRNLEREIAKICRKAAKKILLKKEKS 568 (782)
T ss_pred HHHHhcchHHHHHcCCCc-----------cc---eeecHHHHHHHHHHHhHhhhhhHHHHHHHHHHHHHHHHHHhcCccc
Confidence 999988433222111111 11 13889999999888654444 7788888433 3333344333
Q ss_pred --ccCHHHHHHHHHHHHHHHHHHHH
Q 010366 481 --VLDPSLFREVVDYKVAEHQQRRK 503 (512)
Q Consensus 481 --~it~e~~~~al~~~~~~~~~~~~ 503 (512)
.++..++.+.+...+..+.....
T Consensus 569 ~~~i~~~~l~~yLG~~~f~~~~~~~ 593 (782)
T COG0466 569 IVKIDEKNLKKYLGVPVFRYGKAEE 593 (782)
T ss_pred ceeeCHHHHHHHhCCcccCcccccc
Confidence 68888999988776665554433
No 45
>TIGR00763 lon ATP-dependent protease La. This protein is induced by heat shock and other stresses in E. coli, B. subtilis, and other species. The yeast member, designated PIM1, is located in the mitochondrial matrix, required for mitochondrial function, and also induced by heat shock.
Probab=99.87 E-value=9.9e-20 Score=204.76 Aligned_cols=232 Identities=19% Similarity=0.221 Sum_probs=150.8
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC----------Cc
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------LG 308 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~----------~~ 308 (512)
++++|++.+++.+..++........ ....+++|+||||||||++|+++|+.++.+++.++++.+.. +.
T Consensus 320 ~~~~G~~~~k~~i~~~~~~~~~~~~--~~~~~lll~GppG~GKT~lAk~iA~~l~~~~~~i~~~~~~~~~~i~g~~~~~~ 397 (775)
T TIGR00763 320 EDHYGLKKVKERILEYLAVQKLRGK--MKGPILCLVGPPGVGKTSLGKSIAKALNRKFVRFSLGGVRDEAEIRGHRRTYV 397 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHhhcC--CCCceEEEECCCCCCHHHHHHHHHHHhcCCeEEEeCCCcccHHHHcCCCCcee
Confidence 5689999999999876654332211 12237999999999999999999999999999998765321 22
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH-----c-C------CCCCCEEEEEee
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-----T-G------DQSKDIVLALAT 376 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----~-~------~~~~~viiI~tt 376 (512)
+.....+...|..+...+ .||||||||++.+...+. ...+|..++.. + + -+..+++||+||
T Consensus 398 g~~~g~i~~~l~~~~~~~--~villDEidk~~~~~~~~-----~~~aLl~~ld~~~~~~f~d~~~~~~~d~s~v~~I~Tt 470 (775)
T TIGR00763 398 GAMPGRIIQGLKKAKTKN--PLFLLDEIDKIGSSFRGD-----PASALLEVLDPEQNNAFSDHYLDVPFDLSKVIFIATA 470 (775)
T ss_pred CCCCchHHHHHHHhCcCC--CEEEEechhhcCCccCCC-----HHHHHHHhcCHHhcCccccccCCceeccCCEEEEEec
Confidence 233345556666665433 489999999997533221 12233333321 0 0 123578999999
Q ss_pred CCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC
Q 010366 377 NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 456 (512)
Q Consensus 377 N~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 456 (512)
|..+.+++++++|| .+|.|+.|+.+++..|++.++........... +..+ .++++++..|+..+.
T Consensus 471 N~~~~i~~~L~~R~-~vi~~~~~~~~e~~~I~~~~l~~~~~~~~~l~-----------~~~~---~~~~~~l~~i~~~~~ 535 (775)
T TIGR00763 471 NSIDTIPRPLLDRM-EVIELSGYTEEEKLEIAKKYLIPKALEDHGLK-----------PDEL---KITDEALLLLIKYYT 535 (775)
T ss_pred CCchhCCHHHhCCe-eEEecCCCCHHHHHHHHHHHHHHHHHHHcCCC-----------cceE---EECHHHHHHHHHhcC
Confidence 99999999999999 68999999999999999988743221100000 0011 378999999887543
Q ss_pred -CCcHHHHHHHH----HHH-HHHHh-CCCC------CccCHHHHHHHHHHH
Q 010366 457 -GFSGREIAKLM----ASV-QAAVY-GSEN------CVLDPSLFREVVDYK 494 (512)
Q Consensus 457 -g~s~~dI~~lv----~~~-~aa~~-~~~~------~~it~e~~~~al~~~ 494 (512)
.+..|+|+..+ ..+ ..... +... ..++.+++.+.+.--
T Consensus 536 ~e~g~R~l~r~i~~~~~~~~~~~~~~~~~~~~~~~~v~i~~~~~~~~lg~~ 586 (775)
T TIGR00763 536 REAGVRNLERQIEKICRKAAVKLVEQGEKKKSEAESVVITPDNLKKYLGKP 586 (775)
T ss_pred hhcCChHHHHHHHHHHHHHHHHHHhccCcccCCcccccCCHHHHHHhcCcc
Confidence 34456666655 222 11121 2111 478888887777543
No 46
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=99.87 E-value=2e-20 Score=190.87 Aligned_cols=217 Identities=21% Similarity=0.290 Sum_probs=162.6
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHH
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 312 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~ 312 (512)
..|..|++++|+++.+..+..++.... ..+.++.+++||||||||||++|+++|+.++.++..++++.+...
T Consensus 19 ~rP~~~~~~vG~~~~~~~l~~~l~~~~---~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~~~~~~~~~~~~----- 90 (328)
T PRK00080 19 LRPKSLDEFIGQEKVKENLKIFIEAAK---KRGEALDHVLLYGPPGLGKTTLANIIANEMGVNIRITSGPALEKP----- 90 (328)
T ss_pred cCcCCHHHhcCcHHHHHHHHHHHHHHH---hcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCeEEEecccccCh-----
Confidence 456679999999999999977664432 224566789999999999999999999999998887776543321
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc------CC---------CCCCEEEEEeeC
Q 010366 313 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT------GD---------QSKDIVLALATN 377 (512)
Q Consensus 313 ~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~------~~---------~~~~viiI~ttN 377 (512)
..+..++.. ...++|||||||+.+. ....+.+..++... +. .-.++.+|++||
T Consensus 91 ~~l~~~l~~---l~~~~vl~IDEi~~l~---------~~~~e~l~~~~e~~~~~~~l~~~~~~~~~~~~l~~~~li~at~ 158 (328)
T PRK00080 91 GDLAAILTN---LEEGDVLFIDEIHRLS---------PVVEEILYPAMEDFRLDIMIGKGPAARSIRLDLPPFTLIGATT 158 (328)
T ss_pred HHHHHHHHh---cccCCEEEEecHhhcc---------hHHHHHHHHHHHhcceeeeeccCccccceeecCCCceEEeecC
Confidence 223333332 2457899999999973 22333444444322 11 113478899999
Q ss_pred CCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 378 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 378 ~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
.+..+++++.+||...+.|++|+.+++.+|++..+..... .++++.+..|+..+.|
T Consensus 159 ~~~~l~~~L~sRf~~~~~l~~~~~~e~~~il~~~~~~~~~------------------------~~~~~~~~~ia~~~~G 214 (328)
T PRK00080 159 RAGLLTSPLRDRFGIVQRLEFYTVEELEKIVKRSARILGV------------------------EIDEEGALEIARRSRG 214 (328)
T ss_pred CcccCCHHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC------------------------CcCHHHHHHHHHHcCC
Confidence 9999999999999889999999999999999988776432 2889999999999987
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 458 FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 458 ~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
+++.+..++..+...+...+...|+.+++..+++..
T Consensus 215 -~pR~a~~~l~~~~~~a~~~~~~~I~~~~v~~~l~~~ 250 (328)
T PRK00080 215 -TPRIANRLLRRVRDFAQVKGDGVITKEIADKALDML 250 (328)
T ss_pred -CchHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHh
Confidence 678888888776655544444689999999998653
No 47
>KOG0744 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.87 E-value=6.8e-21 Score=183.93 Aligned_cols=254 Identities=20% Similarity=0.256 Sum_probs=182.7
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCC------CCcceEEecCCCCchHHHHHHHHHHhC---------CCeEEEe
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNA------PFRNMLFYGPPGTGKTMAARELARKSG---------LDYALMT 300 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~------p~~~vLL~GppGtGKT~lA~alA~~l~---------~~~~~v~ 300 (512)
..|+++|....+++.+..++.........+. -.+-+|++||||||||+|++++|+.+. ..++.+|
T Consensus 139 glWEsLiyds~lK~~ll~Ya~s~l~fsek~vntnlIt~NRliLlhGPPGTGKTSLCKaLaQkLSIR~~~~y~~~~liEin 218 (423)
T KOG0744|consen 139 GLWESLIYDSNLKERLLSYAASALLFSEKKVNTNLITWNRLILLHGPPGTGKTSLCKALAQKLSIRTNDRYYKGQLIEIN 218 (423)
T ss_pred hhHHHHhhcccHHHHHHHHHHHHHHHHhcCCCCceeeeeeEEEEeCCCCCChhHHHHHHHHhheeeecCccccceEEEEe
Confidence 3478889999999999876665543333221 114589999999999999999999974 3467788
Q ss_pred CCCCCC-CchhHHHHHHHHHHHHHhc--CCC--cEEEEccchhhhhhcccC---CCCHHHHHHHHHHHHHcC--CCCCCE
Q 010366 301 GGDVAP-LGPQAVTKIHQLFDWAKKS--KRG--LLLFIDEADAFLCERNKT---YMSEAQRSALNALLFRTG--DQSKDI 370 (512)
Q Consensus 301 ~~~~~~-~~~~~~~~l~~lf~~a~~~--~~~--~vl~lDEid~l~~~~~~~---~~~~~~~~~l~~ll~~~~--~~~~~v 370 (512)
+..+.+ +.+++.+.+..+|+..... .++ ..|+|||++.|...|.+. ..+...-.++|.+|.+++ ....||
T Consensus 219 shsLFSKWFsESgKlV~kmF~kI~ELv~d~~~lVfvLIDEVESLa~aR~s~~S~~EpsDaIRvVNalLTQlDrlK~~~Nv 298 (423)
T KOG0744|consen 219 SHSLFSKWFSESGKLVAKMFQKIQELVEDRGNLVFVLIDEVESLAAARTSASSRNEPSDAIRVVNALLTQLDRLKRYPNV 298 (423)
T ss_pred hhHHHHHHHhhhhhHHHHHHHHHHHHHhCCCcEEEEEeHHHHHHHHHHHhhhcCCCCchHHHHHHHHHHHHHHhccCCCE
Confidence 766654 6666767777777665432 223 356799999998887432 224455678899999887 456789
Q ss_pred EEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhh-hhcCCCHHHHH
Q 010366 371 VLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI-EIKGLTDDILM 449 (512)
Q Consensus 371 iiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~l~ 449 (512)
++.+|+|..+.+|.+|.+|-|.+.++.+|+...+..|++.++.++...+-....+. ..++ .+..+.+....
T Consensus 299 liL~TSNl~~siD~AfVDRADi~~yVG~Pt~~ai~~IlkscieEL~~~gIi~~~~~--------s~~~~~~i~~~~~~~~ 370 (423)
T KOG0744|consen 299 LILATSNLTDSIDVAFVDRADIVFYVGPPTAEAIYEILKSCIEELISSGIILFHQR--------STGVKEFIKYQKALRN 370 (423)
T ss_pred EEEeccchHHHHHHHhhhHhhheeecCCccHHHHHHHHHHHHHHHHhcCeeeeecc--------chhhhHHhHhhHhHHH
Confidence 99999999999999999999999999999999999999999998765432111100 0111 01113333444
Q ss_pred HHHHH-cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHH
Q 010366 450 EAAAK-TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 450 ~la~~-t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~ 499 (512)
.++.. +.|.|||.|++|-..+++..... ..+|.+.|..|+-.....+.
T Consensus 371 ~~~~~~~~gLSGRtlrkLP~Laha~y~~~--~~v~~~~fl~al~ea~~k~~ 419 (423)
T KOG0744|consen 371 ILIELSTVGLSGRTLRKLPLLAHAEYFRT--FTVDLSNFLLALLEAAKKLL 419 (423)
T ss_pred HHHHHhhcCCccchHhhhhHHHHHhccCC--CccChHHHHHHHHHHHHHHh
Confidence 44444 58999999999998888776544 68999999888877665543
No 48
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=99.86 E-value=3.5e-20 Score=187.26 Aligned_cols=212 Identities=19% Similarity=0.287 Sum_probs=154.1
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHH
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIH 316 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~ 316 (512)
+|++|||+++.++.+..++...... +.++.+++|+||||||||++|+++|+.++.++..+.++..... ..+.
T Consensus 2 ~~~~~iG~~~~~~~l~~~l~~~~~~---~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~~~~~~~~~~~~~-----~~l~ 73 (305)
T TIGR00635 2 LLAEFIGQEKVKEQLQLFIEAAKMR---QEALDHLLLYGPPGLGKTTLAHIIANEMGVNLKITSGPALEKP-----GDLA 73 (305)
T ss_pred CHHHHcCHHHHHHHHHHHHHHHHhc---CCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeccchhcCc-----hhHH
Confidence 4899999999999987776543322 2344689999999999999999999999988777665433221 1222
Q ss_pred HHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC---------------CCCCCEEEEEeeCCCCC
Q 010366 317 QLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---------------DQSKDIVLALATNRPGD 381 (512)
Q Consensus 317 ~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~---------------~~~~~viiI~ttN~~~~ 381 (512)
..+. ....+.+|||||++.+.. .....+..++.... ....++.+|++||.+..
T Consensus 74 ~~l~---~~~~~~vl~iDEi~~l~~---------~~~e~l~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~li~~t~~~~~ 141 (305)
T TIGR00635 74 AILT---NLEEGDVLFIDEIHRLSP---------AVEELLYPAMEDFRLDIVIGKGPSARSVRLDLPPFTLVGATTRAGM 141 (305)
T ss_pred HHHH---hcccCCEEEEehHhhhCH---------HHHHHhhHHHhhhheeeeeccCccccceeecCCCeEEEEecCCccc
Confidence 2222 234478999999999732 23333443333211 11234789999999999
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++.+||..++.|++|+.+++.++++..+..... .++++.++.++..+.| +++
T Consensus 142 l~~~l~sR~~~~~~l~~l~~~e~~~il~~~~~~~~~------------------------~~~~~al~~ia~~~~G-~pR 196 (305)
T TIGR00635 142 LTSPLRDRFGIILRLEFYTVEELAEIVSRSAGLLNV------------------------EIEPEAALEIARRSRG-TPR 196 (305)
T ss_pred cCHHHHhhcceEEEeCCCCHHHHHHHHHHHHHHhCC------------------------CcCHHHHHHHHHHhCC-Ccc
Confidence 999999999888999999999999999988765321 2889999999999887 568
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
.+..++..+...+.......+|.+++..++..
T Consensus 197 ~~~~ll~~~~~~a~~~~~~~it~~~v~~~l~~ 228 (305)
T TIGR00635 197 IANRLLRRVRDFAQVRGQKIINRDIALKALEM 228 (305)
T ss_pred hHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHH
Confidence 88788865544433333467999999999976
No 49
>KOG0732 consensus AAA+-type ATPase containing the bromodomain [Posttranslational modification, protein turnover, chaperones]
Probab=99.86 E-value=3.8e-21 Score=212.02 Aligned_cols=215 Identities=27% Similarity=0.438 Sum_probs=170.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhch----h-hcCCCCcceEEecCCCCchHHHHHHHHHHhC-----CCeEEEeC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANT----K-AHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTG 301 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~----~-~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v~~ 301 (512)
.....+|+++-|.+..+..+++.+...-.+ . -+-.||+++|||||||||||..|+++|..+. ..|+.-.+
T Consensus 258 ~~~~v~fd~vggl~~~i~~LKEmVl~PLlyPE~f~~~~itpPrgvL~~GppGTGkTl~araLa~~~s~~~~kisffmrkg 337 (1080)
T KOG0732|consen 258 VDSSVGFDSVGGLENYINQLKEMVLLPLLYPEFFDNFNITPPRGVLFHGPPGTGKTLMARALAAACSRGNRKISFFMRKG 337 (1080)
T ss_pred hhcccCccccccHHHHHHHHHHHHHhHhhhhhHhhhcccCCCcceeecCCCCCchhHHHHhhhhhhcccccccchhhhcC
Confidence 344567999999999999998755433221 1 1236889999999999999999999999874 33444445
Q ss_pred CCC-CCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCC
Q 010366 302 GDV-APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNR 378 (512)
Q Consensus 302 ~~~-~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~ 378 (512)
.+. ..+.++.+++++-+|+.|++.. |+|||+||||-|.+.+.... ...+..+...||..++ +..+.|++|++||+
T Consensus 338 aD~lskwvgEaERqlrllFeeA~k~q-PSIIffdeIdGlapvrSskq-Eqih~SIvSTLLaLmdGldsRgqVvvigATnR 415 (1080)
T KOG0732|consen 338 ADCLSKWVGEAERQLRLLFEEAQKTQ-PSIIFFDEIDGLAPVRSSKQ-EQIHASIVSTLLALMDGLDSRGQVVVIGATNR 415 (1080)
T ss_pred chhhccccCcHHHHHHHHHHHHhccC-ceEEeccccccccccccchH-HHhhhhHHHHHHHhccCCCCCCceEEEcccCC
Confidence 554 4488999999999999999876 89999999999988875543 2344455556665554 35668999999999
Q ss_pred CCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC
Q 010366 379 PGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 456 (512)
Q Consensus 379 ~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 456 (512)
++.+||++++ ||+..++|+.|+.+.|..|+..+-.+... .++...+..+|+.+.
T Consensus 416 pda~dpaLRRPgrfdref~f~lp~~~ar~~Il~Ihtrkw~~------------------------~i~~~l~~~la~~t~ 471 (1080)
T KOG0732|consen 416 PDAIDPALRRPGRFDREFYFPLPDVDARAKILDIHTRKWEP------------------------PISRELLLWLAEETS 471 (1080)
T ss_pred ccccchhhcCCcccceeEeeeCCchHHHHHHHHHhccCCCC------------------------CCCHHHHHHHHHhcc
Confidence 9999999988 99999999999999999999988765431 277888999999999
Q ss_pred CCcHHHHHHHHHHHHH
Q 010366 457 GFSGREIAKLMASVQA 472 (512)
Q Consensus 457 g~s~~dI~~lv~~~~a 472 (512)
||-|+||+.||..+..
T Consensus 472 gy~gaDlkaLCTeAal 487 (1080)
T KOG0732|consen 472 GYGGADLKALCTEAAL 487 (1080)
T ss_pred ccchHHHHHHHHHHhh
Confidence 9999999999954433
No 50
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.86 E-value=1.3e-19 Score=204.31 Aligned_cols=237 Identities=17% Similarity=0.222 Sum_probs=159.2
Q ss_pred hHHHHHHHHHHhCCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHH-hhchhh
Q 010366 185 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGA-TANTKA 263 (512)
Q Consensus 185 ~~~~~~~i~~~l~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~~~ 263 (512)
...+..+|.++.|.|. ..+.......|.++...+ -+.|+|+++++..+...+.. ..+...
T Consensus 531 ~~~i~~vv~~~tgip~------------~~~~~~e~~~l~~l~~~L-------~~~v~GQ~~Av~~v~~~i~~~~~gl~~ 591 (852)
T TIGR03345 531 AQAVAEVVADWTGIPV------------GRMVRDEIEAVLSLPDRL-------AERVIGQDHALEAIAERIRTARAGLED 591 (852)
T ss_pred HHHHHHHHHHHHCCCc------------hhhchhHHHHHHHHHHHh-------cCeEcChHHHHHHHHHHHHHHhcCCCC
Confidence 3456666777777664 223333333333333222 38899999999999665544 344445
Q ss_pred cCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC-----------chhHHHHHHHHHHHHHhcCCCc
Q 010366 264 HNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL-----------GPQAVTKIHQLFDWAKKSKRGL 329 (512)
Q Consensus 264 ~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~-----------~~~~~~~l~~lf~~a~~~~~~~ 329 (512)
++.|...+||+||||||||++|++||..+ ...++.++++++... |..+... ...+..+.+..|++
T Consensus 592 ~~~p~~~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~dmse~~~~~~~~~l~g~~~gyvg~~~-~g~L~~~v~~~p~s 670 (852)
T TIGR03345 592 PRKPLGVFLLVGPSGVGKTETALALAELLYGGEQNLITINMSEFQEAHTVSRLKGSPPGYVGYGE-GGVLTEAVRRKPYS 670 (852)
T ss_pred CCCCceEEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEeHHHhhhhhhhccccCCCCCcccccc-cchHHHHHHhCCCc
Confidence 56676779999999999999999999998 357888887765211 1111111 11233344447799
Q ss_pred EEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-----------CCCCEEEEEeeCCCC------------------
Q 010366 330 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNRPG------------------ 380 (512)
Q Consensus 330 vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----------~~~~viiI~ttN~~~------------------ 380 (512)
||+||||+++ +..+++.|++.+++ ++.+++||+|||...
T Consensus 671 vvllDEieka------------~~~v~~~Llq~ld~g~l~d~~Gr~vd~~n~iiI~TSNlg~~~~~~~~~~~~~~~~~~~ 738 (852)
T TIGR03345 671 VVLLDEVEKA------------HPDVLELFYQVFDKGVMEDGEGREIDFKNTVILLTSNAGSDLIMALCADPETAPDPEA 738 (852)
T ss_pred EEEEechhhc------------CHHHHHHHHHHhhcceeecCCCcEEeccccEEEEeCCCchHHHHHhccCcccCcchHH
Confidence 9999999984 34555666665543 236899999999621
Q ss_pred -----------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHH
Q 010366 381 -----------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILM 449 (512)
Q Consensus 381 -----------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (512)
.+.|+|++|++ +|.|.+++.++..+|+...+...... +... .++.+ .+++++++
T Consensus 739 ~~~~~~~~~~~~f~PEflnRi~-iI~F~pLs~e~l~~Iv~~~L~~l~~r------------l~~~-~gi~l-~i~d~a~~ 803 (852)
T TIGR03345 739 LLEALRPELLKVFKPAFLGRMT-VIPYLPLDDDVLAAIVRLKLDRIARR------------LKEN-HGAEL-VYSEALVE 803 (852)
T ss_pred HHHHHHHHHHHhccHHHhccee-EEEeCCCCHHHHHHHHHHHHHHHHHH------------HHHh-cCceE-EECHHHHH
Confidence 26789999996 89999999999999999999875322 1110 01221 38999999
Q ss_pred HHHHHcCC--CcHHHHHHHHH
Q 010366 450 EAAAKTEG--FSGREIAKLMA 468 (512)
Q Consensus 450 ~la~~t~g--~s~~dI~~lv~ 468 (512)
.|+....+ |-+|.+..++.
T Consensus 804 ~La~~g~~~~~GAR~L~r~Ie 824 (852)
T TIGR03345 804 HIVARCTEVESGARNIDAILN 824 (852)
T ss_pred HHHHHcCCCCCChHHHHHHHH
Confidence 99988643 55788888774
No 51
>CHL00181 cbbX CbbX; Provisional
Probab=99.86 E-value=2e-20 Score=186.44 Aligned_cols=172 Identities=25% Similarity=0.302 Sum_probs=124.9
Q ss_pred CCccccChHHHHHHHHHHHHhhch---hhcC----CCCcceEEecCCCCchHHHHHHHHHHhC-------CCeEEEeCCC
Q 010366 238 FGDVILHPSLQKRIRQLSGATANT---KAHN----APFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMTGGD 303 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~---~~~~----~p~~~vLL~GppGtGKT~lA~alA~~l~-------~~~~~v~~~~ 303 (512)
+++++|.+.++++|..++...... ...+ .+..+++|+||||||||++|+++|..+. .+++.+++.+
T Consensus 22 ~~~l~Gl~~vK~~i~e~~~~~~~~~~~~~~g~~~~~~~~~ill~G~pGtGKT~lAr~la~~~~~~g~~~~~~~~~v~~~~ 101 (287)
T CHL00181 22 DEELVGLAPVKTRIREIAALLLIDRLRKNLGLTSSNPGLHMSFTGSPGTGKTTVALKMADILYKLGYIKKGHLLTVTRDD 101 (287)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHHcCCCCCCceEEecHHH
Confidence 368999999999998876543321 1111 2334699999999999999999998752 3578888766
Q ss_pred CCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC--
Q 010366 304 VAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-- 380 (512)
Q Consensus 304 ~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~-- 380 (512)
+.. +.+.+......++..+. ++||||||++.+...++... .....+..|+..+++...+++||++++...
T Consensus 102 l~~~~~g~~~~~~~~~l~~a~----ggVLfIDE~~~l~~~~~~~~---~~~e~~~~L~~~me~~~~~~~vI~ag~~~~~~ 174 (287)
T CHL00181 102 LVGQYIGHTAPKTKEVLKKAM----GGVLFIDEAYYLYKPDNERD---YGSEAIEILLQVMENQRDDLVVIFAGYKDRMD 174 (287)
T ss_pred HHHHHhccchHHHHHHHHHcc----CCEEEEEccchhccCCCccc---hHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHH
Confidence 543 33334444555665542 68999999999865433222 235566677777766667888888876422
Q ss_pred ---CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHh
Q 010366 381 ---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI 416 (512)
Q Consensus 381 ---~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~ 416 (512)
.++|++.+||+.+|.|++|+.+++..|+..++.+..
T Consensus 175 ~~~~~np~L~sR~~~~i~F~~~t~~el~~I~~~~l~~~~ 213 (287)
T CHL00181 175 KFYESNPGLSSRIANHVDFPDYTPEELLQIAKIMLEEQQ 213 (287)
T ss_pred HHHhcCHHHHHhCCceEEcCCcCHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999998753
No 52
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=99.86 E-value=3.5e-20 Score=183.04 Aligned_cols=200 Identities=20% Similarity=0.251 Sum_probs=144.2
Q ss_pred CCccccChHHHHHHHHHHHHhhchh---hcC----CCCcceEEecCCCCchHHHHHHHHHHhC-------CCeEEEeCCC
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTK---AHN----APFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMTGGD 303 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~---~~~----~p~~~vLL~GppGtGKT~lA~alA~~l~-------~~~~~v~~~~ 303 (512)
+++++|.+.+++.|..+........ ..| ....+++|+||||||||++|+++|+.+. .+++.+++++
T Consensus 5 l~~~~Gl~~vk~~i~~~~~~~~~~~~~~~~g~~~~~~~~~vll~GppGtGKTtlA~~ia~~l~~~~~~~~~~~v~~~~~~ 84 (261)
T TIGR02881 5 LSRMVGLDEVKALIKEIYAWIQINEKRKEEGLKTSKQVLHMIFKGNPGTGKTTVARILGKLFKEMNVLSKGHLIEVERAD 84 (261)
T ss_pred HHHhcChHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCcceEEEEcCCCCCHHHHHHHHHHHHHhcCcccCCceEEecHHH
Confidence 5889999999999998776653321 122 2235799999999999999999998752 3677777777
Q ss_pred CCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC--
Q 010366 304 VAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-- 380 (512)
Q Consensus 304 ~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~-- 380 (512)
+.. +.++....+..+|..+. ++||||||+|.|..... .......++.++..+++...++++|++++..+
T Consensus 85 l~~~~~g~~~~~~~~~~~~a~----~~VL~IDE~~~L~~~~~----~~~~~~~i~~Ll~~~e~~~~~~~vila~~~~~~~ 156 (261)
T TIGR02881 85 LVGEYIGHTAQKTREVIKKAL----GGVLFIDEAYSLARGGE----KDFGKEAIDTLVKGMEDNRNEFVLILAGYSDEMD 156 (261)
T ss_pred hhhhhccchHHHHHHHHHhcc----CCEEEEechhhhccCCc----cchHHHHHHHHHHHHhccCCCEEEEecCCcchhH
Confidence 644 44455566677776553 68999999999853211 12345677888888877777788887765432
Q ss_pred ---CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--
Q 010366 381 ---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-- 455 (512)
Q Consensus 381 ---~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-- 455 (512)
.++|++.+||+..+.||+|+.+++..|++.++..... .++++.+..++...
T Consensus 157 ~~~~~~p~L~sRf~~~i~f~~~~~~el~~Il~~~~~~~~~------------------------~l~~~a~~~l~~~~~~ 212 (261)
T TIGR02881 157 YFLSLNPGLRSRFPISIDFPDYTVEELMEIAERMVKEREY------------------------KLTEEAKWKLREHLYK 212 (261)
T ss_pred HHHhcChHHHhccceEEEECCCCHHHHHHHHHHHHHHcCC------------------------ccCHHHHHHHHHHHHH
Confidence 4789999999999999999999999999999876321 16666666665431
Q ss_pred -------CCCcHHHHHHHHHH
Q 010366 456 -------EGFSGREIAKLMAS 469 (512)
Q Consensus 456 -------~g~s~~dI~~lv~~ 469 (512)
...++|.+.+++..
T Consensus 213 ~~~~~~~~~gn~R~~~n~~e~ 233 (261)
T TIGR02881 213 VDQLSSREFSNARYVRNIIEK 233 (261)
T ss_pred HHhccCCCCchHHHHHHHHHH
Confidence 12467888888743
No 53
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=99.85 E-value=2.9e-20 Score=185.31 Aligned_cols=216 Identities=26% Similarity=0.365 Sum_probs=156.6
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHH
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVT 313 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~ 313 (512)
.|.+++++|||+++...-.-+.+.+... ...+++|||||||||||+|+.||...+.+|..++... .+.+
T Consensus 19 RP~~lde~vGQ~HLlg~~~~lrr~v~~~-----~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~------~gvk 87 (436)
T COG2256 19 RPKSLDEVVGQEHLLGEGKPLRRAVEAG-----HLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVT------SGVK 87 (436)
T ss_pred CCCCHHHhcChHhhhCCCchHHHHHhcC-----CCceeEEECCCCCCHHHHHHHHHHhhCCceEEecccc------ccHH
Confidence 4667999999999875433333322211 1248999999999999999999999999999998743 4567
Q ss_pred HHHHHHHHHHhcC---CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee--CCCCCCCHHHHc
Q 010366 314 KIHQLFDWAKKSK---RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLDSAVAD 388 (512)
Q Consensus 314 ~l~~lf~~a~~~~---~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt--N~~~~l~~al~~ 388 (512)
.++.+++.++... +..|||||||+.| +...+..|.-.+ ..+.+++|++| |..-.++++++|
T Consensus 88 dlr~i~e~a~~~~~~gr~tiLflDEIHRf---------nK~QQD~lLp~v-----E~G~iilIGATTENPsF~ln~ALlS 153 (436)
T COG2256 88 DLREIIEEARKNRLLGRRTILFLDEIHRF---------NKAQQDALLPHV-----ENGTIILIGATTENPSFELNPALLS 153 (436)
T ss_pred HHHHHHHHHHHHHhcCCceEEEEehhhhc---------Chhhhhhhhhhh-----cCCeEEEEeccCCCCCeeecHHHhh
Confidence 8888998886543 3589999999997 334455554444 56678888865 666789999999
Q ss_pred cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHH
Q 010366 389 RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMA 468 (512)
Q Consensus 389 R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~ 468 (512)
|+ .++.|.+.+.++...+++..+........ -....++++.++.++..+.| |.+.+++
T Consensus 154 R~-~vf~lk~L~~~di~~~l~ra~~~~~rgl~-----------------~~~~~i~~~a~~~l~~~s~G----D~R~aLN 211 (436)
T COG2256 154 RA-RVFELKPLSSEDIKKLLKRALLDEERGLG-----------------GQIIVLDEEALDYLVRLSNG----DARRALN 211 (436)
T ss_pred hh-heeeeecCCHHHHHHHHHHHHhhhhcCCC-----------------cccccCCHHHHHHHHHhcCc----hHHHHHH
Confidence 99 99999999999999999985543221100 00123789999999998877 6666666
Q ss_pred HHHHHHhCCC-CCccCHHHHHHHHHHHHH
Q 010366 469 SVQAAVYGSE-NCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 469 ~~~aa~~~~~-~~~it~e~~~~al~~~~~ 496 (512)
.+..++.... ...++.+++.+++.....
T Consensus 212 ~LE~~~~~~~~~~~~~~~~l~~~l~~~~~ 240 (436)
T COG2256 212 LLELAALSAEPDEVLILELLEEILQRRSA 240 (436)
T ss_pred HHHHHHHhcCCCcccCHHHHHHHHhhhhh
Confidence 6665554432 235568888888877554
No 54
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.85 E-value=6.8e-20 Score=190.97 Aligned_cols=207 Identities=21% Similarity=0.229 Sum_probs=152.1
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.|..|+++||++++...|...+. .+..+..+||+||||||||++|+.+|+.+++.
T Consensus 10 ~KyRP~~f~dvVGQe~iv~~L~~~i~-------~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnce~~~~~~pCg~C~sC~ 82 (484)
T PRK14956 10 RKYRPQFFRDVIHQDLAIGALQNALK-------SGKIGHAYIFFGPRGVGKTTIARILAKRLNCENPIGNEPCNECTSCL 82 (484)
T ss_pred HHhCCCCHHHHhChHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHhcCcccccCccccCCCcHHH
Confidence 36788899999999999998876553 22333458999999999999999999998753
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.+++.. ..+...++.+.+.+. ...++.|+||||+|.| ....++.||..+
T Consensus 83 ~i~~g~~~dviEIdaas-----~~gVd~IReL~e~l~~~p~~g~~KV~IIDEah~L------------s~~A~NALLKtL 145 (484)
T PRK14956 83 EITKGISSDVLEIDAAS-----NRGIENIRELRDNVKFAPMGGKYKVYIIDEVHML------------TDQSFNALLKTL 145 (484)
T ss_pred HHHccCCccceeechhh-----cccHHHHHHHHHHHHhhhhcCCCEEEEEechhhc------------CHHHHHHHHHHh
Confidence 22222211 112334444444433 2234679999999997 234678888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.+++||++|+.+..+.+.++||| ..+.|.+++.++....++..+..... .+
T Consensus 146 EEPp~~viFILaTte~~kI~~TI~SRC-q~~~f~~ls~~~i~~~L~~i~~~Egi------------------------~~ 200 (484)
T PRK14956 146 EEPPAHIVFILATTEFHKIPETILSRC-QDFIFKKVPLSVLQDYSEKLCKIENV------------------------QY 200 (484)
T ss_pred hcCCCceEEEeecCChhhccHHHHhhh-heeeecCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888899999999999999999999999 88999999999999888888765322 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+++++..|+..+.| +.|+.-.++..+. +... ..||.+.+.+++
T Consensus 201 e~eAL~~Ia~~S~G-d~RdAL~lLeq~i--~~~~--~~it~~~V~~~l 243 (484)
T PRK14956 201 DQEGLFWIAKKGDG-SVRDMLSFMEQAI--VFTD--SKLTGVKIRKMI 243 (484)
T ss_pred CHHHHHHHHHHcCC-hHHHHHHHHHHHH--HhCC--CCcCHHHHHHHh
Confidence 89999999999887 5666666653322 2222 357888776654
No 55
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=99.85 E-value=5.9e-20 Score=183.07 Aligned_cols=199 Identities=23% Similarity=0.277 Sum_probs=144.6
Q ss_pred CccccChHHHHHHHHHHHHhhch---hhc----CCCCcceEEecCCCCchHHHHHHHHHHhC-------CCeEEEeCCCC
Q 010366 239 GDVILHPSLQKRIRQLSGATANT---KAH----NAPFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMTGGDV 304 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~---~~~----~~p~~~vLL~GppGtGKT~lA~alA~~l~-------~~~~~v~~~~~ 304 (512)
.+++|.+++++.+..++...... ... ..|..+++|+||||||||++|+++|..+. .+++.++++++
T Consensus 22 ~~l~Gl~~vk~~i~e~~~~~~~~~~r~~~g~~~~~~~~~vll~G~pGTGKT~lA~~ia~~l~~~g~~~~~~~v~v~~~~l 101 (284)
T TIGR02880 22 RELIGLKPVKTRIREIAALLLVERLRQRLGLASAAPTLHMSFTGNPGTGKTTVALRMAQILHRLGYVRKGHLVSVTRDDL 101 (284)
T ss_pred HhccCHHHHHHHHHHHHHHHHHHHHHHHhCCCcCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCcccceEEEecHHHH
Confidence 47999999999998876654321 111 22445899999999999999999988763 36888887665
Q ss_pred CC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC--C-
Q 010366 305 AP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP--G- 380 (512)
Q Consensus 305 ~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~--~- 380 (512)
.. +.+.+...+..+|+.+. +++|||||++.+.+.+.... .....++.|+..++....+++||++++.. +
T Consensus 102 ~~~~~g~~~~~~~~~~~~a~----~gvL~iDEi~~L~~~~~~~~---~~~~~~~~Ll~~le~~~~~~~vI~a~~~~~~~~ 174 (284)
T TIGR02880 102 VGQYIGHTAPKTKEILKRAM----GGVLFIDEAYYLYRPDNERD---YGQEAIEILLQVMENQRDDLVVILAGYKDRMDS 174 (284)
T ss_pred hHhhcccchHHHHHHHHHcc----CcEEEEechhhhccCCCccc---hHHHHHHHHHHHHhcCCCCEEEEEeCCcHHHHH
Confidence 43 33344455666776653 68999999999864432222 33456667777776667788888887643 2
Q ss_pred --CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH----
Q 010366 381 --DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---- 454 (512)
Q Consensus 381 --~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---- 454 (512)
.++|++.+||+..|.||+|+.+++..|+..++.+.... ++++.+..++.+
T Consensus 175 ~~~~np~L~sR~~~~i~fp~l~~edl~~I~~~~l~~~~~~------------------------l~~~a~~~L~~~l~~~ 230 (284)
T TIGR02880 175 FFESNPGFSSRVAHHVDFPDYSEAELLVIAGLMLKEQQYR------------------------FSAEAEEAFADYIALR 230 (284)
T ss_pred HHhhCHHHHhhCCcEEEeCCcCHHHHHHHHHHHHHHhccc------------------------cCHHHHHHHHHHHHHh
Confidence 35899999999999999999999999999999875321 566666666655
Q ss_pred ---cCCCcHHHHHHHHH
Q 010366 455 ---TEGFSGREIAKLMA 468 (512)
Q Consensus 455 ---t~g~s~~dI~~lv~ 468 (512)
.+-.++|++++++.
T Consensus 231 ~~~~~~GN~R~lrn~ve 247 (284)
T TIGR02880 231 RTQPHFANARSIRNAID 247 (284)
T ss_pred CCCCCCChHHHHHHHHH
Confidence 33346899999984
No 56
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=7.5e-20 Score=194.92 Aligned_cols=205 Identities=20% Similarity=0.229 Sum_probs=153.0
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.+.+|++|||++++++.|.+.+. .+..+..+||+||+|||||++|+.||+.+++.
T Consensus 8 rKYRPqtFddVIGQe~vv~~L~~al~-------~gRLpHA~LFtGP~GvGKTTLAriLAkaLnC~~p~~~~g~~~~PCG~ 80 (700)
T PRK12323 8 RKWRPRDFTTLVGQEHVVRALTHALE-------QQRLHHAYLFTGTRGVGKTTLSRILAKSLNCTGADGEGGITAQPCGQ 80 (700)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHH-------hCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCccccccCCCCCCcc
Confidence 46888999999999999998877663 22333468999999999999999999998761
Q ss_pred --------------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHH
Q 010366 296 --------------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNA 358 (512)
Q Consensus 296 --------------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ 358 (512)
++.++... ..+...++.+.+.+.. ..++.|+||||+|.| ....+|.
T Consensus 81 C~sC~~I~aG~hpDviEIdAas-----~~gVDdIReLie~~~~~P~~gr~KViIIDEah~L------------s~~AaNA 143 (700)
T PRK12323 81 CRACTEIDAGRFVDYIEMDAAS-----NRGVDEMAQLLDKAVYAPTAGRFKVYMIDEVHML------------TNHAFNA 143 (700)
T ss_pred cHHHHHHHcCCCCcceEecccc-----cCCHHHHHHHHHHHHhchhcCCceEEEEEChHhc------------CHHHHHH
Confidence 22222211 1223455555555432 334679999999997 2356788
Q ss_pred HHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhh
Q 010366 359 LLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 438 (512)
Q Consensus 359 ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (512)
||..+++.+.+++||++||.++.+.+.++||| ..+.|..++.++....+...+.....
T Consensus 144 LLKTLEEPP~~v~FILaTtep~kLlpTIrSRC-q~f~f~~ls~eei~~~L~~Il~~Egi--------------------- 201 (700)
T PRK12323 144 MLKTLEEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPGHIVSHLDAILGEEGI--------------------- 201 (700)
T ss_pred HHHhhccCCCCceEEEEeCChHhhhhHHHHHH-HhcccCCCChHHHHHHHHHHHHHcCC---------------------
Confidence 99999998999999999999999999999999 99999999999999998888765321
Q ss_pred hhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 010366 439 EIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFRE 489 (512)
Q Consensus 439 ~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~ 489 (512)
.++++.+..|+..+.| +.++...++..+. .++. ..||.+++.+
T Consensus 202 ---~~d~eAL~~IA~~A~G-s~RdALsLLdQai--a~~~--~~It~~~V~~ 244 (700)
T PRK12323 202 ---AHEVNALRLLAQAAQG-SMRDALSLTDQAI--AYSA--GNVSEEAVRG 244 (700)
T ss_pred ---CCCHHHHHHHHHHcCC-CHHHHHHHHHHHH--Hhcc--CCcCHHHHHH
Confidence 2788889999999877 7777777764322 2332 3465554444
No 57
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.84 E-value=1.4e-19 Score=191.32 Aligned_cols=207 Identities=22% Similarity=0.276 Sum_probs=150.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 294 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~----------------- 294 (512)
++.|.+|+++||+++++..+...+. .+..+.++||+||||||||++|+++|+.+++
T Consensus 7 kyRP~~~~divGq~~i~~~L~~~i~-------~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~~~~~~~~~pc~~c~~c~~ 79 (472)
T PRK14962 7 KYRPKTFSEVVGQDHVKKLIINALK-------KNSISHAYIFAGPRGTGKTTVARILAKSLNCENRKGVEPCNECRACRS 79 (472)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCCCcccHHHHH
Confidence 5778889999999999888766542 2334456999999999999999999999864
Q ss_pred -------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 295 -------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 295 -------~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
.++.++++. ..+ ...++.+.+.+.. ...+.||||||+|.|. ...++.|+..++
T Consensus 80 i~~g~~~dv~el~aa~--~~g---id~iR~i~~~~~~~p~~~~~kVvIIDE~h~Lt------------~~a~~~LLk~LE 142 (472)
T PRK14962 80 IDEGTFMDVIELDAAS--NRG---IDEIRKIRDAVGYRPMEGKYKVYIIDEVHMLT------------KEAFNALLKTLE 142 (472)
T ss_pred HhcCCCCccEEEeCcc--cCC---HHHHHHHHHHHhhChhcCCeEEEEEEChHHhH------------HHHHHHHHHHHH
Confidence 244444321 112 2334444444432 2345799999999972 335677777777
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 365 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+.+..+++|++|+.+..+.+++.+|+ ..+.|++|+.++...+++..+..... .++
T Consensus 143 ~p~~~vv~Ilattn~~kl~~~L~SR~-~vv~f~~l~~~el~~~L~~i~~~egi------------------------~i~ 197 (472)
T PRK14962 143 EPPSHVVFVLATTNLEKVPPTIISRC-QVIEFRNISDELIIKRLQEVAEAEGI------------------------EID 197 (472)
T ss_pred hCCCcEEEEEEeCChHhhhHHHhcCc-EEEEECCccHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 77788999988888889999999999 79999999999999998888765322 289
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 445 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 445 ~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+++++.|+..+.| +.|.+..++..+. .+.. ..||.+++.+++.
T Consensus 198 ~eal~~Ia~~s~G-dlR~aln~Le~l~--~~~~--~~It~e~V~~~l~ 240 (472)
T PRK14962 198 REALSFIAKRASG-GLRDALTMLEQVW--KFSE--GKITLETVHEALG 240 (472)
T ss_pred HHHHHHHHHHhCC-CHHHHHHHHHHHH--HhcC--CCCCHHHHHHHHc
Confidence 9999999998866 5555444443222 2222 3499999988875
No 58
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=99.83 E-value=1.9e-19 Score=194.12 Aligned_cols=205 Identities=19% Similarity=0.228 Sum_probs=151.4
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.+.+|++|||++++++.|...+. .+..+..+||+||+|||||++|+.||+.+++.
T Consensus 8 rKYRPqtFdEVIGQe~Vv~~L~~aL~-------~gRL~HAyLFtGPpGvGKTTlAriLAKaLnCe~~~~~~PCG~C~sCr 80 (830)
T PRK07003 8 RKWRPKDFASLVGQEHVVRALTHALD-------GGRLHHAYLFTGTRGVGKTTLSRIFAKALNCETGVTSQPCGVCRACR 80 (830)
T ss_pred HHhCCCcHHHHcCcHHHHHHHHHHHh-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCccCCCCCCCcccHHHH
Confidence 46888999999999999999877652 23334468999999999999999999998642
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.++..+ ..+...++.+++.+.. ..++.|+||||+|.|. ...+|.||..+
T Consensus 81 ~I~~G~h~DviEIDAas-----~rgVDdIReLIe~a~~~P~~gr~KVIIIDEah~LT------------~~A~NALLKtL 143 (830)
T PRK07003 81 EIDEGRFVDYVEMDAAS-----NRGVDEMAALLERAVYAPVDARFKVYMIDEVHMLT------------NHAFNAMLKTL 143 (830)
T ss_pred HHhcCCCceEEEecccc-----cccHHHHHHHHHHHHhccccCCceEEEEeChhhCC------------HHHHHHHHHHH
Confidence 23332221 1223445556555432 2346799999999972 24577888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.+++||++||.+..|.+.++||| ..+.|..++.++....|+..+..... .+
T Consensus 144 EEPP~~v~FILaTtd~~KIp~TIrSRC-q~f~Fk~Ls~eeIv~~L~~Il~~EgI------------------------~i 198 (830)
T PRK07003 144 EEPPPHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPAGHIVSHLERILGEERI------------------------AF 198 (830)
T ss_pred HhcCCCeEEEEEECChhhccchhhhhe-EEEecCCcCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888889999999999999999999999 99999999999999999988865432 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFRE 489 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~ 489 (512)
+++.+..|+..+.| +.|+...++..+ ..++. ..||.+++..
T Consensus 199 d~eAL~lIA~~A~G-smRdALsLLdQA--ia~~~--~~It~~~V~~ 239 (830)
T PRK07003 199 EPQALRLLARAAQG-SMRDALSLTDQA--IAYSA--NEVTETAVSG 239 (830)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHH--HHhcc--CCcCHHHHHH
Confidence 89999999999987 566666664322 23332 2455555544
No 59
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=99.83 E-value=1.2e-19 Score=174.86 Aligned_cols=196 Identities=20% Similarity=0.255 Sum_probs=146.1
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC------CeEEEeCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL------DYALMTGGDV 304 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~------~~~~v~~~~~ 304 (512)
.++.|.+|++++|++.++..+...+.. .+.| ++|||||||||||++|+++|+++.. .+...+.++.
T Consensus 28 eKYrPkt~de~~gQe~vV~~L~~a~~~------~~lp--~~LFyGPpGTGKTStalafar~L~~~~~~~~rvl~lnaSde 99 (346)
T KOG0989|consen 28 EKYRPKTFDELAGQEHVVQVLKNALLR------RILP--HYLFYGPPGTGKTSTALAFARALNCEQLFPCRVLELNASDE 99 (346)
T ss_pred HHhCCCcHHhhcchHHHHHHHHHHHhh------cCCc--eEEeeCCCCCcHhHHHHHHHHHhcCccccccchhhhccccc
Confidence 378889999999999999999765422 2334 8999999999999999999999875 2344455554
Q ss_pred CCC--chhHHHHHHHHHHHHH-----hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeC
Q 010366 305 APL--GPQAVTKIHQLFDWAK-----KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN 377 (512)
Q Consensus 305 ~~~--~~~~~~~l~~lf~~a~-----~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN 377 (512)
.+. +.+.......+..... ..+++-|++|||+|.+ .....+.|...+++.+..++||+.||
T Consensus 100 rGisvvr~Kik~fakl~~~~~~~~~~~~~~fKiiIlDEcdsm------------tsdaq~aLrr~mE~~s~~trFiLIcn 167 (346)
T KOG0989|consen 100 RGISVVREKIKNFAKLTVLLKRSDGYPCPPFKIIILDECDSM------------TSDAQAALRRTMEDFSRTTRFILICN 167 (346)
T ss_pred ccccchhhhhcCHHHHhhccccccCCCCCcceEEEEechhhh------------hHHHHHHHHHHHhccccceEEEEEcC
Confidence 332 1111111122211111 1223469999999996 34455566666677889999999999
Q ss_pred CCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 378 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 378 ~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
.++.+.+.+.||+ ..+.|++...+.....|+....+.... +++++++.|+..+.|
T Consensus 168 ylsrii~pi~SRC-~KfrFk~L~d~~iv~rL~~Ia~~E~v~------------------------~d~~al~~I~~~S~G 222 (346)
T KOG0989|consen 168 YLSRIIRPLVSRC-QKFRFKKLKDEDIVDRLEKIASKEGVD------------------------IDDDALKLIAKISDG 222 (346)
T ss_pred ChhhCChHHHhhH-HHhcCCCcchHHHHHHHHHHHHHhCCC------------------------CCHHHHHHHHHHcCC
Confidence 9999999999999 899999999999999999888775443 899999999999876
Q ss_pred CcHHHHHHHHHHHHHHHh
Q 010366 458 FSGREIAKLMASVQAAVY 475 (512)
Q Consensus 458 ~s~~dI~~lv~~~~aa~~ 475 (512)
|++..+..++.++.
T Consensus 223 ----dLR~Ait~Lqsls~ 236 (346)
T KOG0989|consen 223 ----DLRRAITTLQSLSL 236 (346)
T ss_pred ----cHHHHHHHHHHhhc
Confidence 67777777777665
No 60
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=2e-19 Score=192.05 Aligned_cols=208 Identities=19% Similarity=0.190 Sum_probs=156.7
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.|.+|++|||++.+++.+...+. .+..+..+||+||||||||++|+.+|+.+++.
T Consensus 8 ~kyRP~~f~divGq~~v~~~L~~~~~-------~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~ 80 (509)
T PRK14958 8 RKWRPRCFQEVIGQAPVVRALSNALD-------QQYLHHAYLFTGTRGVGKTTISRILAKCLNCEKGVSANPCNDCENCR 80 (509)
T ss_pred HHHCCCCHHHhcCCHHHHHHHHHHHH-------hCCCCeeEEEECCCCCCHHHHHHHHHHHhcCCCCCCcccCCCCHHHH
Confidence 46889999999999999999876653 23334468999999999999999999998652
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.++++. ......++.+.+.+.. ..++.|+||||+|.|. ...++.|+..+
T Consensus 81 ~i~~g~~~d~~eidaas-----~~~v~~iR~l~~~~~~~p~~~~~kV~iIDE~~~ls------------~~a~naLLk~L 143 (509)
T PRK14958 81 EIDEGRFPDLFEVDAAS-----RTKVEDTRELLDNIPYAPTKGRFKVYLIDEVHMLS------------GHSFNALLKTL 143 (509)
T ss_pred HHhcCCCceEEEEcccc-----cCCHHHHHHHHHHHhhccccCCcEEEEEEChHhcC------------HHHHHHHHHHH
Confidence 33343321 1223345555554332 2346799999999972 34578888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.+++||++|+.+..+.+.+++|+ ..+.|.+++.++....+...+...... +
T Consensus 144 Eepp~~~~fIlattd~~kl~~tI~SRc-~~~~f~~l~~~~i~~~l~~il~~egi~------------------------~ 198 (509)
T PRK14958 144 EEPPSHVKFILATTDHHKLPVTVLSRC-LQFHLAQLPPLQIAAHCQHLLKEENVE------------------------F 198 (509)
T ss_pred hccCCCeEEEEEECChHhchHHHHHHh-hhhhcCCCCHHHHHHHHHHHHHHcCCC------------------------C
Confidence 888889999999999999999999999 889999999999998888888764322 7
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+++.+..++..+.| +.+++..++..+ ++++ ...||.+++...+.
T Consensus 199 ~~~al~~ia~~s~G-slR~al~lLdq~--ia~~--~~~It~~~V~~~lg 242 (509)
T PRK14958 199 ENAALDLLARAANG-SVRDALSLLDQS--IAYG--NGKVLIADVKTMLG 242 (509)
T ss_pred CHHHHHHHHHHcCC-cHHHHHHHHHHH--HhcC--CCCcCHHHHHHHHC
Confidence 88999999999866 788887777533 3443 35688877776653
No 61
>KOG2004 consensus Mitochondrial ATP-dependent protease PIM1/LON [Posttranslational modification, protein turnover, chaperones]
Probab=99.83 E-value=2.1e-18 Score=181.38 Aligned_cols=206 Identities=23% Similarity=0.260 Sum_probs=144.9
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC----------Cc
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------LG 308 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~----------~~ 308 (512)
++-.|.++++++|.+++....-. +....+-++|+||||+|||++++.||+.++..|+.++.+.+.. |.
T Consensus 411 eDHYgm~dVKeRILEfiAV~kLr--gs~qGkIlCf~GPPGVGKTSI~kSIA~ALnRkFfRfSvGG~tDvAeIkGHRRTYV 488 (906)
T KOG2004|consen 411 EDHYGMEDVKERILEFIAVGKLR--GSVQGKILCFVGPPGVGKTSIAKSIARALNRKFFRFSVGGMTDVAEIKGHRRTYV 488 (906)
T ss_pred ccccchHHHHHHHHHHHHHHhhc--ccCCCcEEEEeCCCCCCcccHHHHHHHHhCCceEEEeccccccHHhhcccceeee
Confidence 67788899999998877544322 2222346999999999999999999999999999999766533 44
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH---------c-C--CCCCCEEEEEee
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---------T-G--DQSKDIVLALAT 376 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~---------~-~--~~~~~viiI~tt 376 (512)
+....++.+.+......+ | +++|||||++++...++. ..+|..+|.. . + -+-+.|+||||+
T Consensus 489 GAMPGkiIq~LK~v~t~N-P-liLiDEvDKlG~g~qGDP-----asALLElLDPEQNanFlDHYLdVp~DLSkVLFicTA 561 (906)
T KOG2004|consen 489 GAMPGKIIQCLKKVKTEN-P-LILIDEVDKLGSGHQGDP-----ASALLELLDPEQNANFLDHYLDVPVDLSKVLFICTA 561 (906)
T ss_pred ccCChHHHHHHHhhCCCC-c-eEEeehhhhhCCCCCCCh-----HHHHHHhcChhhccchhhhccccccchhheEEEEec
Confidence 555566666676666655 3 889999999974332221 1222222221 1 1 134579999999
Q ss_pred CCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC
Q 010366 377 NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 456 (512)
Q Consensus 377 N~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 456 (512)
|..+.+++++++|+ .+|.++-|..++...|.+.|+-.......... +.. -.++++.+..|.+++.
T Consensus 562 N~idtIP~pLlDRM-EvIelsGYv~eEKv~IA~~yLip~a~~~~gl~-----------~e~---v~is~~al~~lI~~Yc 626 (906)
T KOG2004|consen 562 NVIDTIPPPLLDRM-EVIELSGYVAEEKVKIAERYLIPQALKDCGLK-----------PEQ---VKISDDALLALIERYC 626 (906)
T ss_pred cccccCChhhhhhh-heeeccCccHHHHHHHHHHhhhhHHHHHcCCC-----------HHh---cCccHHHHHHHHHHHH
Confidence 99999999999999 99999999999999999998854322211111 112 2378888888877765
Q ss_pred CCcH-----HHHHHHHH
Q 010366 457 GFSG-----REIAKLMA 468 (512)
Q Consensus 457 g~s~-----~dI~~lv~ 468 (512)
.-+| +.|.++++
T Consensus 627 rEaGVRnLqk~iekI~R 643 (906)
T KOG2004|consen 627 REAGVRNLQKQIEKICR 643 (906)
T ss_pred HHHhHHHHHHHHHHHHH
Confidence 4455 56666773
No 62
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.83 E-value=4.5e-19 Score=189.44 Aligned_cols=207 Identities=21% Similarity=0.264 Sum_probs=155.8
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.|.+|++|||++.+++.|...+. .+..+..+||+||||||||++|+++|+.+++.
T Consensus 7 rKyRPktFddVIGQe~vv~~L~~aI~-------~grl~HAyLF~GPpGvGKTTlAriLAK~LnC~~~~~~~pCg~C~sC~ 79 (702)
T PRK14960 7 RKYRPRNFNELVGQNHVSRALSSALE-------RGRLHHAYLFTGTRGVGKTTIARILAKCLNCETGVTSTPCEVCATCK 79 (702)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCcCCCCCCCccCHHHH
Confidence 36788899999999999998876653 33444678999999999999999999998652
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.+++++- .....++.+...+.. ..++.|+||||+|.| + ...++.|+..+
T Consensus 80 ~I~~g~hpDviEIDAAs~-----~~VddIReli~~~~y~P~~gk~KV~IIDEVh~L---------S---~~A~NALLKtL 142 (702)
T PRK14960 80 AVNEGRFIDLIEIDAASR-----TKVEDTRELLDNVPYAPTQGRFKVYLIDEVHML---------S---THSFNALLKTL 142 (702)
T ss_pred HHhcCCCCceEEeccccc-----CCHHHHHHHHHHHhhhhhcCCcEEEEEechHhc---------C---HHHHHHHHHHH
Confidence 233333211 123445555544322 234679999999997 2 23567788888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.++.||++|+.+..+.+.+++|| ..+.|.+++.++....+...+..... .+
T Consensus 143 EEPP~~v~FILaTtd~~kIp~TIlSRC-q~feFkpLs~eEI~k~L~~Il~kEgI------------------------~i 197 (702)
T PRK14960 143 EEPPEHVKFLFATTDPQKLPITVISRC-LQFTLRPLAVDEITKHLGAILEKEQI------------------------AA 197 (702)
T ss_pred hcCCCCcEEEEEECChHhhhHHHHHhh-heeeccCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888888999999999999999999999 99999999999999999988876432 28
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+++.+..|+..+.| +.|++..++..+ .+++ ...||.+++...+
T Consensus 198 d~eAL~~IA~~S~G-dLRdALnLLDQa--Iayg--~g~IT~edV~~lL 240 (702)
T PRK14960 198 DQDAIWQIAESAQG-SLRDALSLTDQA--IAYG--QGAVHHQDVKEML 240 (702)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHH--HHhc--CCCcCHHHHHHHh
Confidence 89999999999876 777777776433 3343 3568888887654
No 63
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=6.7e-19 Score=181.80 Aligned_cols=208 Identities=21% Similarity=0.230 Sum_probs=153.7
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe--------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY-------------- 296 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~-------------- 296 (512)
.++.|..|+++||++.+++.+...+. .+..+..+||+||||||||++|+++|+.+.+..
T Consensus 8 ~kyrP~~~~~iiGq~~~~~~l~~~~~-------~~~~~h~~L~~Gp~G~GKTtla~~la~~l~c~~~~~~~pc~~c~~c~ 80 (363)
T PRK14961 8 RKWRPQYFRDIIGQKHIVTAISNGLS-------LGRIHHAWLLSGTRGVGKTTIARLLAKSLNCQNGITSNPCRKCIICK 80 (363)
T ss_pred HHhCCCchhhccChHHHHHHHHHHHH-------cCCCCeEEEEecCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 36788899999999999998876552 233334689999999999999999999986421
Q ss_pred ----------EEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 297 ----------ALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 297 ----------~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
+.++++. ......++.+.+.+... .++.|+||||+|.+. ...++.++..+
T Consensus 81 ~~~~~~~~d~~~~~~~~-----~~~v~~ir~i~~~~~~~p~~~~~kviIIDEa~~l~------------~~a~naLLk~l 143 (363)
T PRK14961 81 EIEKGLCLDLIEIDAAS-----RTKVEEMREILDNIYYSPSKSRFKVYLIDEVHMLS------------RHSFNALLKTL 143 (363)
T ss_pred HHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEEChhhcC------------HHHHHHHHHHH
Confidence 1121110 12234455555544321 235699999999861 23567788888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.++.+|++|+.++.+.+.+.+|+ ..+.|++|+.++...++...+..... .+
T Consensus 144 Ee~~~~~~fIl~t~~~~~l~~tI~SRc-~~~~~~~l~~~el~~~L~~~~~~~g~------------------------~i 198 (363)
T PRK14961 144 EEPPQHIKFILATTDVEKIPKTILSRC-LQFKLKIISEEKIFNFLKYILIKESI------------------------DT 198 (363)
T ss_pred hcCCCCeEEEEEcCChHhhhHHHHhhc-eEEeCCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888888889999988889999999999 88999999999999999988876432 28
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+++.+..++..+.| +++++..++..+. .++ ...||.+++.+++.
T Consensus 199 ~~~al~~ia~~s~G-~~R~al~~l~~~~--~~~--~~~It~~~v~~~l~ 242 (363)
T PRK14961 199 DEYALKLIAYHAHG-SMRDALNLLEHAI--NLG--KGNINIKNVTDMLG 242 (363)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH--Hhc--CCCCCHHHHHHHHC
Confidence 88999999999866 7777777765433 233 36789888887664
No 64
>PLN03025 replication factor C subunit; Provisional
Probab=99.82 E-value=4e-19 Score=180.58 Aligned_cols=204 Identities=19% Similarity=0.252 Sum_probs=145.0
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-----CeEEEeCCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-----DYALMTGGDVA 305 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-----~~~~v~~~~~~ 305 (512)
.++.|.+|++++|++++...+..++. .+..| ++||+||||||||++|+++|+.+.. .++.++.++..
T Consensus 5 ~kyrP~~l~~~~g~~~~~~~L~~~~~------~~~~~--~lll~Gp~G~GKTtla~~la~~l~~~~~~~~~~eln~sd~~ 76 (319)
T PLN03025 5 EKYRPTKLDDIVGNEDAVSRLQVIAR------DGNMP--NLILSGPPGTGKTTSILALAHELLGPNYKEAVLELNASDDR 76 (319)
T ss_pred hhcCCCCHHHhcCcHHHHHHHHHHHh------cCCCc--eEEEECCCCCCHHHHHHHHHHHHhcccCccceeeecccccc
Confidence 36788999999999999988876542 12223 7999999999999999999999732 35556655432
Q ss_pred CCchhHHHHHHHHHHHHHh------cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 306 PLGPQAVTKIHQLFDWAKK------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 306 ~~~~~~~~~l~~lf~~a~~------~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
+.+ .++........ ..++.||+|||+|.+ +...+..| +..++..+..+.+|++||..
T Consensus 77 --~~~---~vr~~i~~~~~~~~~~~~~~~kviiiDE~d~l---------t~~aq~aL---~~~lE~~~~~t~~il~~n~~ 139 (319)
T PLN03025 77 --GID---VVRNKIKMFAQKKVTLPPGRHKIVILDEADSM---------TSGAQQAL---RRTMEIYSNTTRFALACNTS 139 (319)
T ss_pred --cHH---HHHHHHHHHHhccccCCCCCeEEEEEechhhc---------CHHHHHHH---HHHHhcccCCceEEEEeCCc
Confidence 212 22222221111 123579999999997 22334444 44444456677889999999
Q ss_pred CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 380 GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 380 ~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
..+.+++.+|+ ..+.|++|+.++....+...+...... ++++.+..++..+.|
T Consensus 140 ~~i~~~L~SRc-~~i~f~~l~~~~l~~~L~~i~~~egi~------------------------i~~~~l~~i~~~~~g-- 192 (319)
T PLN03025 140 SKIIEPIQSRC-AIVRFSRLSDQEILGRLMKVVEAEKVP------------------------YVPEGLEAIIFTADG-- 192 (319)
T ss_pred cccchhHHHhh-hcccCCCCCHHHHHHHHHHHHHHcCCC------------------------CCHHHHHHHHHHcCC--
Confidence 99999999999 799999999999999999888664322 789999999988755
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREV 490 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~a 490 (512)
|++.+++.++.+..+ ...||.+++.+.
T Consensus 193 --DlR~aln~Lq~~~~~--~~~i~~~~v~~~ 219 (319)
T PLN03025 193 --DMRQALNNLQATHSG--FGFVNQENVFKV 219 (319)
T ss_pred --CHHHHHHHHHHHHhc--CCCCCHHHHHHH
Confidence 666777666655543 246777777653
No 65
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.82 E-value=4.4e-19 Score=196.50 Aligned_cols=202 Identities=17% Similarity=0.235 Sum_probs=146.1
Q ss_pred CCccccChHHHHHHHHHHHHh-hchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCc--------
Q 010366 238 FGDVILHPSLQKRIRQLSGAT-ANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-------- 308 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~-~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~-------- 308 (512)
-..|+||+++++.+...+... .+...++.|..++||+||||||||++|+++|..++.+++.++++++....
T Consensus 457 ~~~ViGQ~~ai~~l~~~i~~~~~gl~~~~kp~~~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~se~~~~~~~~~LiG~ 536 (758)
T PRK11034 457 KMLVFGQDKAIEALTEAIKMSRAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_pred cceEeCcHHHHHHHHHHHHHHhccccCCCCCcceEEEECCCCCCHHHHHHHHHHHhCCCcEEeechhhcccccHHHHcCC
Confidence 377999999999997766543 33444567777899999999999999999999999999999998864311
Q ss_pred ---hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-----------CCCCEEEEE
Q 010366 309 ---PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLAL 374 (512)
Q Consensus 309 ---~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----------~~~~viiI~ 374 (512)
..+.. ....+..+.+..+++||||||||++ +..+++.|++.+++ +..+++||+
T Consensus 537 ~~gyvg~~-~~g~L~~~v~~~p~sVlllDEieka------------~~~v~~~LLq~ld~G~ltd~~g~~vd~rn~iiI~ 603 (758)
T PRK11034 537 PPGYVGFD-QGGLLTDAVIKHPHAVLLLDEIEKA------------HPDVFNLLLQVMDNGTLTDNNGRKADFRNVVLVM 603 (758)
T ss_pred CCCccccc-ccchHHHHHHhCCCcEEEeccHhhh------------hHHHHHHHHHHHhcCeeecCCCceecCCCcEEEE
Confidence 00001 1123334444566899999999995 34455555555432 235789999
Q ss_pred eeCCC-------------------------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhh
Q 010366 375 ATNRP-------------------------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHR 429 (512)
Q Consensus 375 ttN~~-------------------------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~ 429 (512)
|||.. ..+.|+|++|+|.+|.|++++.++...|+..++.+....
T Consensus 604 TsN~g~~~~~~~~~g~~~~~~~~~~~~~~~~~f~pefl~Rid~ii~f~~L~~~~l~~I~~~~l~~~~~~----------- 672 (758)
T PRK11034 604 TTNAGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQAQ----------- 672 (758)
T ss_pred eCCcCHHHHhhcccCcccchhhHHHHHHHHHhcCHHHHccCCEEEEcCCCCHHHHHHHHHHHHHHHHHH-----------
Confidence 99942 236799999999999999999999999999988775322
Q ss_pred hhhhhhhhhhhcCCCHHHHHHHHHHc--CCCcHHHHHHHH
Q 010366 430 LFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLM 467 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~la~~t--~g~s~~dI~~lv 467 (512)
++. .++.+ .+++.+++.|+... ..+.+|.|+.++
T Consensus 673 -l~~--~~i~l-~~~~~~~~~l~~~~~~~~~GAR~l~r~i 708 (758)
T PRK11034 673 -LDQ--KGVSL-EVSQEARDWLAEKGYDRAMGARPMARVI 708 (758)
T ss_pred -HHH--CCCCc-eECHHHHHHHHHhCCCCCCCCchHHHHH
Confidence 221 12222 38899999999763 334567777777
No 66
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.82 E-value=7.8e-19 Score=184.98 Aligned_cols=207 Identities=19% Similarity=0.222 Sum_probs=158.2
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC----------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---------------- 294 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~---------------- 294 (512)
.++.|.+|+++||++.+++.+.+.+. .+..+.++||+||||||||++|+.+|+.+++
T Consensus 5 ~KyRP~~f~dliGQe~vv~~L~~a~~-------~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~C~~C~ 77 (491)
T PRK14964 5 LKYRPSSFKDLVGQDVLVRILRNAFT-------LNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGTCHNCI 77 (491)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccccHHHH
Confidence 36788999999999999998865542 3445568999999999999999999997642
Q ss_pred --------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 295 --------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 295 --------~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
+++.+++++. .+...++.+.+.+.. ..++.|++|||+|.|. ...++.|+..+
T Consensus 78 ~i~~~~~~Dv~eidaas~-----~~vddIR~Iie~~~~~P~~~~~KVvIIDEah~Ls------------~~A~NaLLK~L 140 (491)
T PRK14964 78 SIKNSNHPDVIEIDAASN-----TSVDDIKVILENSCYLPISSKFKVYIIDEVHMLS------------NSAFNALLKTL 140 (491)
T ss_pred HHhccCCCCEEEEecccC-----CCHHHHHHHHHHHHhccccCCceEEEEeChHhCC------------HHHHHHHHHHH
Confidence 2344444321 233455555555442 2346799999999872 34678889889
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+..++||++|+.+..+.+.+.+|+ ..+.|.+++.++....+...+..... .+
T Consensus 141 EePp~~v~fIlatte~~Kl~~tI~SRc-~~~~f~~l~~~el~~~L~~ia~~Egi------------------------~i 195 (491)
T PRK14964 141 EEPAPHVKFILATTEVKKIPVTIISRC-QRFDLQKIPTDKLVEHLVDIAKKENI------------------------EH 195 (491)
T ss_pred hCCCCCeEEEEEeCChHHHHHHHHHhh-eeeecccccHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888899999999999999999999999 88999999999999999988876432 28
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+++.+..|+..+.| +.+++..++..+. .+.. ..||.+++.+.+
T Consensus 196 ~~eAL~lIa~~s~G-slR~alslLdqli--~y~~--~~It~e~V~~ll 238 (491)
T PRK14964 196 DEESLKLIAENSSG-SMRNALFLLEQAA--IYSN--NKISEKSVRDLL 238 (491)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH--HhcC--CCCCHHHHHHHH
Confidence 99999999999966 7887777775433 3333 478888888764
No 67
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=99.82 E-value=8.5e-19 Score=189.79 Aligned_cols=208 Identities=20% Similarity=0.222 Sum_probs=154.3
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.+.+|++|||++.++..|...+.. +..+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~divGQe~vv~~L~~~l~~-------~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~~C~ 80 (647)
T PRK07994 8 RKWRPQTFAEVVGQEHVLTALANALDL-------GRLHHAYLFSGTRGVGKTTIARLLAKGLNCETGITATPCGECDNCR 80 (647)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHhhhhccCCCCCCCCCCHHHH
Confidence 367888999999999999988766532 2333457999999999999999999998763
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.+++.. ......++.+.+.+. ...++.|+||||+|.| ....+|.||..+
T Consensus 81 ~i~~g~~~D~ieidaas-----~~~VddiR~li~~~~~~p~~g~~KV~IIDEah~L------------s~~a~NALLKtL 143 (647)
T PRK07994 81 EIEQGRFVDLIEIDAAS-----RTKVEDTRELLDNVQYAPARGRFKVYLIDEVHML------------SRHSFNALLKTL 143 (647)
T ss_pred HHHcCCCCCceeecccc-----cCCHHHHHHHHHHHHhhhhcCCCEEEEEechHhC------------CHHHHHHHHHHH
Confidence 22222211 112334455544433 2345679999999997 245688899989
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.+++||++|+.+..+.+.++||| ..+.|.+++.++....+...+..... .+
T Consensus 144 EEPp~~v~FIL~Tt~~~kLl~TI~SRC-~~~~f~~Ls~~ei~~~L~~il~~e~i------------------------~~ 198 (647)
T PRK07994 144 EEPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRQQLEHILQAEQI------------------------PF 198 (647)
T ss_pred HcCCCCeEEEEecCCccccchHHHhhh-eEeeCCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 889999999999999999999999999 99999999999999999988765322 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+++.+..|+..+.| +.|+...++..+ .+.+. ..||.+++...+.
T Consensus 199 e~~aL~~Ia~~s~G-s~R~Al~lldqa--ia~~~--~~it~~~v~~~lg 242 (647)
T PRK07994 199 EPRALQLLARAADG-SMRDALSLTDQA--IASGN--GQVTTDDVSAMLG 242 (647)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHH--HHhcC--CCcCHHHHHHHHc
Confidence 88899999999877 677777776432 22322 4577777766553
No 68
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=99.81 E-value=2e-19 Score=158.00 Aligned_cols=127 Identities=35% Similarity=0.566 Sum_probs=107.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCC-CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCC
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 349 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~-~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~ 349 (512)
+||+||||||||++|+.+|+.++.+++.++++.+. .........+..+|..+.....++||||||+|.+.+.. ....+
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~vl~iDe~d~l~~~~-~~~~~ 79 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSELISSYAGDSEQKIRDFFKKAKKSAKPCVLFIDEIDKLFPKS-QPSSS 79 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHHHTSSTTHHHHHHHHHHHHHHHTSTSEEEEEETGGGTSHHC-STSSS
T ss_pred CEEECcCCCCeeHHHHHHHhhcccccccccccccccccccccccccccccccccccccceeeeeccchhccccc-ccccc
Confidence 68999999999999999999999999999999886 46678888999999998876547999999999999887 33345
Q ss_pred HHHHHHHHHHHHHcCCCC---CCEEEEEeeCCCCCCCHHHH-ccccceeecCC
Q 010366 350 EAQRSALNALLFRTGDQS---KDIVLALATNRPGDLDSAVA-DRIDEVLEFPL 398 (512)
Q Consensus 350 ~~~~~~l~~ll~~~~~~~---~~viiI~ttN~~~~l~~al~-~R~~~~i~~~~ 398 (512)
......+..++..++... .+++||+|||.++.+++.++ +||+..+++|.
T Consensus 80 ~~~~~~~~~L~~~l~~~~~~~~~~~vI~ttn~~~~i~~~l~~~rf~~~i~~~~ 132 (132)
T PF00004_consen 80 SFEQRLLNQLLSLLDNPSSKNSRVIVIATTNSPDKIDPALLRSRFDRRIEFPL 132 (132)
T ss_dssp HHHHHHHHHHHHHHHTTTTTSSSEEEEEEESSGGGSCHHHHSTTSEEEEEE-S
T ss_pred cccccccceeeecccccccccccceeEEeeCChhhCCHhHHhCCCcEEEEcCC
Confidence 566677777777765433 46999999999999999999 99999999874
No 69
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.81 E-value=1.6e-18 Score=190.26 Aligned_cols=193 Identities=22% Similarity=0.244 Sum_probs=143.4
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeE-E-EeCC------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYA-L-MTGG------ 302 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~-~-v~~~------ 302 (512)
.++.+.+|++|||++.++..|..++. .+..+..+||+||||||||++|+.+|+.+++... . ..|+
T Consensus 8 eKyRP~tFddIIGQe~Iv~~LknaI~-------~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnce~~~~~~pCg~C~sC~ 80 (944)
T PRK14949 8 RKWRPATFEQMVGQSHVLHALTNALT-------QQRLHHAYLFTGTRGVGKTSLARLFAKGLNCEQGVTATPCGVCSSCV 80 (944)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-------hCCCCeEEEEECCCCCCHHHHHHHHHHhccCccCCCCCCCCCchHHH
Confidence 36788899999999999999876653 2233345799999999999999999999876411 0 0010
Q ss_pred --------CCCCCc---hhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCC
Q 010366 303 --------DVAPLG---PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSK 368 (512)
Q Consensus 303 --------~~~~~~---~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 368 (512)
++.... ......++.+...+.. ..++.|+||||+|.| ....++.||..+++.+.
T Consensus 81 ~i~~g~~~DviEidAas~~kVDdIReLie~v~~~P~~gk~KViIIDEAh~L------------T~eAqNALLKtLEEPP~ 148 (944)
T PRK14949 81 EIAQGRFVDLIEVDAASRTKVDDTRELLDNVQYRPSRGRFKVYLIDEVHML------------SRSSFNALLKTLEEPPE 148 (944)
T ss_pred HHhcCCCceEEEeccccccCHHHHHHHHHHHHhhhhcCCcEEEEEechHhc------------CHHHHHHHHHHHhccCC
Confidence 000000 1122334444443332 234679999999996 35678888999998899
Q ss_pred CEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHH
Q 010366 369 DIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDIL 448 (512)
Q Consensus 369 ~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (512)
+++||++|+.+..+.+.+++|| ..+.|.+++.++....++..+..... .++++.+
T Consensus 149 ~vrFILaTTe~~kLl~TIlSRC-q~f~fkpLs~eEI~~~L~~il~~EgI------------------------~~edeAL 203 (944)
T PRK14949 149 HVKFLLATTDPQKLPVTVLSRC-LQFNLKSLTQDEIGTQLNHILTQEQL------------------------PFEAEAL 203 (944)
T ss_pred CeEEEEECCCchhchHHHHHhh-eEEeCCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHH
Confidence 9999999999999999999999 99999999999999999888765321 2788999
Q ss_pred HHHHHHcCCCcHHHHHHHHH
Q 010366 449 MEAAAKTEGFSGREIAKLMA 468 (512)
Q Consensus 449 ~~la~~t~g~s~~dI~~lv~ 468 (512)
..|+..+.| ++|++..++.
T Consensus 204 ~lIA~~S~G-d~R~ALnLLd 222 (944)
T PRK14949 204 TLLAKAANG-SMRDALSLTD 222 (944)
T ss_pred HHHHHHcCC-CHHHHHHHHH
Confidence 999999877 7778777774
No 70
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=99.81 E-value=2.1e-18 Score=183.12 Aligned_cols=211 Identities=19% Similarity=0.263 Sum_probs=158.5
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe--------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY-------------- 296 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~-------------- 296 (512)
.++.|..|+++||++.++..+...+. .+..+.++||+||||||||++|+.+|+.+++..
T Consensus 13 ~kyRP~~f~dliGq~~vv~~L~~ai~-------~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Lnc~~~~~~~~~~~~C~~C 85 (507)
T PRK06645 13 RKYRPSNFAELQGQEVLVKVLSYTIL-------NDRLAGGYLLTGIRGVGKTTSARIIAKAVNCSALITENTTIKTCEQC 85 (507)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCccccccCcCcCCCCCC
Confidence 46889999999999999998866442 234446899999999999999999999986521
Q ss_pred --------------EEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHH
Q 010366 297 --------------ALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNAL 359 (512)
Q Consensus 297 --------------~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~l 359 (512)
+.+++. ...+...++.+++.+... .++.|+||||++.+. ...++.|
T Consensus 86 ~~C~~i~~~~h~Dv~eidaa-----s~~~vd~Ir~iie~a~~~P~~~~~KVvIIDEa~~Ls------------~~a~naL 148 (507)
T PRK06645 86 TNCISFNNHNHPDIIEIDAA-----SKTSVDDIRRIIESAEYKPLQGKHKIFIIDEVHMLS------------KGAFNAL 148 (507)
T ss_pred hHHHHHhcCCCCcEEEeecc-----CCCCHHHHHHHHHHHHhccccCCcEEEEEEChhhcC------------HHHHHHH
Confidence 111111 112345666676666532 346799999999862 3457778
Q ss_pred HHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhh
Q 010366 360 LFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 439 (512)
Q Consensus 360 l~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (512)
+..+++.+..++||++|+.++.+.+.+.+|+ ..+.|.+++.++...+++..+.....
T Consensus 149 Lk~LEepp~~~vfI~aTte~~kI~~tI~SRc-~~~ef~~ls~~el~~~L~~i~~~egi---------------------- 205 (507)
T PRK06645 149 LKTLEEPPPHIIFIFATTEVQKIPATIISRC-QRYDLRRLSFEEIFKLLEYITKQENL---------------------- 205 (507)
T ss_pred HHHHhhcCCCEEEEEEeCChHHhhHHHHhcc-eEEEccCCCHHHHHHHHHHHHHHcCC----------------------
Confidence 8888888889999999999999999999999 78999999999999999999876432
Q ss_pred hcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 440 IKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 440 ~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
.++++.+..|+..+.| +.+++..++..+.+... .....||.+++++.+.
T Consensus 206 --~ie~eAL~~Ia~~s~G-slR~al~~Ldkai~~~~-~~~~~It~~~V~~llg 254 (507)
T PRK06645 206 --KTDIEALRIIAYKSEG-SARDAVSILDQAASMSA-KSDNIISPQVINQMLG 254 (507)
T ss_pred --CCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhhc-cCCCCcCHHHHHHHHC
Confidence 2788999999999876 78888777754433222 1234688888877653
No 71
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.81 E-value=3.5e-18 Score=193.44 Aligned_cols=202 Identities=18% Similarity=0.248 Sum_probs=144.9
Q ss_pred CCccccChHHHHHHHHHHH-HhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc-----
Q 010366 238 FGDVILHPSLQKRIRQLSG-ATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG----- 308 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~-~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~----- 308 (512)
-+.|+||+.++..+...+. .......++.|..++||+||||||||++|++||+.+ +.+++.++++++....
T Consensus 508 ~~~v~GQ~~ai~~l~~~i~~~~~gl~~~~~p~~~~lf~Gp~GvGKt~lA~~LA~~l~~~~~~~~~~d~s~~~~~~~~~~l 587 (821)
T CHL00095 508 HKRIIGQDEAVVAVSKAIRRARVGLKNPNRPIASFLFSGPTGVGKTELTKALASYFFGSEDAMIRLDMSEYMEKHTVSKL 587 (821)
T ss_pred cCcCcChHHHHHHHHHHHHHHhhcccCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCccceEEEEchhccccccHHHh
Confidence 3789999999999976554 444455567777789999999999999999999987 3678888887763211
Q ss_pred ------hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-----------CCCCEE
Q 010366 309 ------PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIV 371 (512)
Q Consensus 309 ------~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----------~~~~vi 371 (512)
..+......+.. +.+..|++||+|||+|++ +..+++.|++.+++ ++.+++
T Consensus 588 ~g~~~gyvg~~~~~~l~~-~~~~~p~~VvllDeieka------------~~~v~~~Llq~le~g~~~d~~g~~v~~~~~i 654 (821)
T CHL00095 588 IGSPPGYVGYNEGGQLTE-AVRKKPYTVVLFDEIEKA------------HPDIFNLLLQILDDGRLTDSKGRTIDFKNTL 654 (821)
T ss_pred cCCCCcccCcCccchHHH-HHHhCCCeEEEECChhhC------------CHHHHHHHHHHhccCceecCCCcEEecCceE
Confidence 111111122333 334466899999999994 45566666666543 256899
Q ss_pred EEEeeCCCC-------------------------------------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHH
Q 010366 372 LALATNRPG-------------------------------------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 414 (512)
Q Consensus 372 iI~ttN~~~-------------------------------------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~ 414 (512)
||+|||... .+.|+|++|+|.+|.|.+++.++..+|+...+.+
T Consensus 655 ~I~Tsn~g~~~i~~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~~~~f~peflnRid~ii~F~pL~~~~l~~Iv~~~l~~ 734 (821)
T CHL00095 655 IIMTSNLGSKVIETNSGGLGFELSENQLSEKQYKRLSNLVNEELKQFFRPEFLNRLDEIIVFRQLTKNDVWEIAEIMLKN 734 (821)
T ss_pred EEEeCCcchHHHHhhccccCCcccccccccccHHHHHHHHHHHHHHhcCHHHhccCCeEEEeCCCCHHHHHHHHHHHHHH
Confidence 999998531 1457899999999999999999999999999987
Q ss_pred HhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCCcHHHHHHHH
Q 010366 415 YIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLM 467 (512)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~s~~dI~~lv 467 (512)
.... +.. .++.+ .+++++++.|+... ..+-+|.|..++
T Consensus 735 l~~r------------l~~--~~i~l-~~~~~~~~~La~~~~~~~~GAR~l~r~i 774 (821)
T CHL00095 735 LFKR------------LNE--QGIQL-EVTERIKTLLIEEGYNPLYGARPLRRAI 774 (821)
T ss_pred HHHH------------HHH--CCcEE-EECHHHHHHHHHhcCCCCCChhhHHHHH
Confidence 5332 111 12222 38999999999872 345568787777
No 72
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.80 E-value=2.7e-18 Score=185.56 Aligned_cols=207 Identities=21% Similarity=0.272 Sum_probs=154.6
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.+.+|++|||++.++..|.+++.. +..+..+||+||+|||||++|+.+|+.+++.
T Consensus 8 ~KyRP~~f~dviGQe~vv~~L~~~l~~-------~rl~ha~Lf~Gp~GvGKTtlAr~lAk~LnC~~~~~~~~~~~~pCg~ 80 (618)
T PRK14951 8 RKYRPRSFSEMVGQEHVVQALTNALTQ-------QRLHHAYLFTGTRGVGKTTVSRILAKSLNCQGPDGQGGITATPCGV 80 (618)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCcccccCCCCCCCCc
Confidence 367889999999999999988776532 2333468999999999999999999998641
Q ss_pred --------------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHH
Q 010366 296 --------------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNA 358 (512)
Q Consensus 296 --------------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ 358 (512)
++.++.. .......++.+.+.+... .++.|+||||+|.|. ...+|.
T Consensus 81 C~~C~~i~~g~h~D~~eldaa-----s~~~Vd~iReli~~~~~~p~~g~~KV~IIDEvh~Ls------------~~a~Na 143 (618)
T PRK14951 81 CQACRDIDSGRFVDYTELDAA-----SNRGVDEVQQLLEQAVYKPVQGRFKVFMIDEVHMLT------------NTAFNA 143 (618)
T ss_pred cHHHHHHHcCCCCceeecCcc-----cccCHHHHHHHHHHHHhCcccCCceEEEEEChhhCC------------HHHHHH
Confidence 2222211 112234555565554322 236799999999972 345788
Q ss_pred HHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhh
Q 010366 359 LLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 438 (512)
Q Consensus 359 ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (512)
|+..+++.+..++||++|+.+..+.+.+++|+ ..+.|..++.++....+...+.....
T Consensus 144 LLKtLEEPP~~~~fIL~Ttd~~kil~TIlSRc-~~~~f~~Ls~eei~~~L~~i~~~egi--------------------- 201 (618)
T PRK14951 144 MLKTLEEPPEYLKFVLATTDPQKVPVTVLSRC-LQFNLRPMAPETVLEHLTQVLAAENV--------------------- 201 (618)
T ss_pred HHHhcccCCCCeEEEEEECCchhhhHHHHHhc-eeeecCCCCHHHHHHHHHHHHHHcCC---------------------
Confidence 88889888899999999999999999999999 99999999999999999988766432
Q ss_pred hhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 439 EIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 439 ~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
.++++.+..|+..+.| +.+++..++. ++..++ ...||.+++.+++
T Consensus 202 ---~ie~~AL~~La~~s~G-slR~al~lLd--q~ia~~--~~~It~~~V~~~L 246 (618)
T PRK14951 202 ---PAEPQALRLLARAARG-SMRDALSLTD--QAIAFG--SGQLQEAAVRQML 246 (618)
T ss_pred ---CCCHHHHHHHHHHcCC-CHHHHHHHHH--HHHHhc--CCCcCHHHHHHHH
Confidence 2788999999998876 7777777663 233333 2568877777655
No 73
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=99.80 E-value=2.5e-18 Score=185.45 Aligned_cols=209 Identities=20% Similarity=0.231 Sum_probs=157.5
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe--------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY-------------- 296 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~-------------- 296 (512)
.++.+.+|++|||++.+++.|...+. .+..+.++||+||+|||||++|+.+|+.+++.-
T Consensus 8 rKYRP~tFddIIGQe~vv~~L~~ai~-------~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC~~~~~~~pCg~C~sCr 80 (709)
T PRK08691 8 RKWRPKTFADLVGQEHVVKALQNALD-------EGRLHHAYLLTGTRGVGKTTIARILAKSLNCENAQHGEPCGVCQSCT 80 (709)
T ss_pred HHhCCCCHHHHcCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccCCCCCCCCcccHHHH
Confidence 46888999999999999999877653 234446799999999999999999999876431
Q ss_pred ----------EEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 297 ----------ALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 297 ----------~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
+.++.. ...+...++.+++.+.. ..++.||||||+|.| + ...++.||..+
T Consensus 81 ~i~~g~~~DvlEidaA-----s~~gVd~IRelle~a~~~P~~gk~KVIIIDEad~L---------s---~~A~NALLKtL 143 (709)
T PRK08691 81 QIDAGRYVDLLEIDAA-----SNTGIDNIREVLENAQYAPTAGKYKVYIIDEVHML---------S---KSAFNAMLKTL 143 (709)
T ss_pred HHhccCccceEEEecc-----ccCCHHHHHHHHHHHHhhhhhCCcEEEEEECcccc---------C---HHHHHHHHHHH
Confidence 122211 11223455566554432 234679999999986 1 34567888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.++.||++|+.+..+.+.+++|| ..+.|++++.++....+...+..... .+
T Consensus 144 EEPp~~v~fILaTtd~~kL~~TIrSRC-~~f~f~~Ls~eeI~~~L~~Il~kEgi------------------------~i 198 (709)
T PRK08691 144 EEPPEHVKFILATTDPHKVPVTVLSRC-LQFVLRNMTAQQVADHLAHVLDSEKI------------------------AY 198 (709)
T ss_pred HhCCCCcEEEEEeCCccccchHHHHHH-hhhhcCCCCHHHHHHHHHHHHHHcCC------------------------Cc
Confidence 878888999999999999999999999 88999999999999999988876432 28
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
+++.+..|+..+.| +.|++..++..+.+ ++ ...|+.+++...+..
T Consensus 199 d~eAL~~Ia~~A~G-slRdAlnLLDqaia--~g--~g~It~e~V~~lLG~ 243 (709)
T PRK08691 199 EPPALQLLGRAAAG-SMRDALSLLDQAIA--LG--SGKVAENDVRQMIGA 243 (709)
T ss_pred CHHHHHHHHHHhCC-CHHHHHHHHHHHHH--hc--CCCcCHHHHHHHHcc
Confidence 89999999999866 78888887754333 33 256888887777644
No 74
>PRK04195 replication factor C large subunit; Provisional
Probab=99.80 E-value=2.8e-18 Score=183.67 Aligned_cols=211 Identities=22% Similarity=0.283 Sum_probs=153.0
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchh
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQ 310 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~ 310 (512)
.++.|.+|++++|++.++..+..++.... .+.|++++||+||||||||++|+++|+.++.+++.+++++....
T Consensus 6 eKyrP~~l~dlvg~~~~~~~l~~~l~~~~----~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielnasd~r~~--- 78 (482)
T PRK04195 6 EKYRPKTLSDVVGNEKAKEQLREWIESWL----KGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNASDQRTA--- 78 (482)
T ss_pred hhcCCCCHHHhcCCHHHHHHHHHHHHHHh----cCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcccccccH---
Confidence 36788889999999999999988775443 34556789999999999999999999999999999998875421
Q ss_pred HHHHHHHHHHHHHhc-----CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCH-
Q 010366 311 AVTKIHQLFDWAKKS-----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDS- 384 (512)
Q Consensus 311 ~~~~l~~lf~~a~~~-----~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~- 384 (512)
..+..+...+... .++.+|+|||+|.+.... ....+..++..+. ..+..||+++|.+..+.+
T Consensus 79 --~~i~~~i~~~~~~~sl~~~~~kvIiIDEaD~L~~~~--------d~~~~~aL~~~l~--~~~~~iIli~n~~~~~~~k 146 (482)
T PRK04195 79 --DVIERVAGEAATSGSLFGARRKLILLDEVDGIHGNE--------DRGGARAILELIK--KAKQPIILTANDPYDPSLR 146 (482)
T ss_pred --HHHHHHHHHhhccCcccCCCCeEEEEecCccccccc--------chhHHHHHHHHHH--cCCCCEEEeccCccccchh
Confidence 1223333322221 246799999999985321 1122333444343 234567788899888887
Q ss_pred HHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHH
Q 010366 385 AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIA 464 (512)
Q Consensus 385 al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~ 464 (512)
.+.+|+ ..|.|++|+..++..++...+..... .++++++..|+..+.| |++
T Consensus 147 ~Lrsr~-~~I~f~~~~~~~i~~~L~~i~~~egi------------------------~i~~eaL~~Ia~~s~G----DlR 197 (482)
T PRK04195 147 ELRNAC-LMIEFKRLSTRSIVPVLKRICRKEGI------------------------ECDDEALKEIAERSGG----DLR 197 (482)
T ss_pred hHhccc-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC----CHH
Confidence 677777 88999999999999999988865432 2789999999998755 777
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 465 KLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 465 ~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
.+++.++..+.+ ...+|.+++..++
T Consensus 198 ~ain~Lq~~a~~--~~~it~~~v~~~~ 222 (482)
T PRK04195 198 SAINDLQAIAEG--YGKLTLEDVKTLG 222 (482)
T ss_pred HHHHHHHHHhcC--CCCCcHHHHHHhh
Confidence 777777764433 3567777776543
No 75
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.80 E-value=1.7e-18 Score=193.73 Aligned_cols=203 Identities=22% Similarity=0.313 Sum_probs=146.7
Q ss_pred CCccccChHHHHHHHHHHHHh-hchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC---------
Q 010366 238 FGDVILHPSLQKRIRQLSGAT-ANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL--------- 307 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~-~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~--------- 307 (512)
-+.|+||+++++.+...+... .....++.|..++||+||||||||++|++||..++.+++.++++++...
T Consensus 453 ~~~v~GQ~~ai~~l~~~i~~~~~g~~~~~~p~~~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d~se~~~~~~~~~lig~ 532 (731)
T TIGR02639 453 KAKIFGQDEAIDSLVSSIKRSRAGLGNPNKPVGSFLFTGPTGVGKTELAKQLAEALGVHLERFDMSEYMEKHTVSRLIGA 532 (731)
T ss_pred hcceeCcHHHHHHHHHHHHHHhcCCCCCCCCceeEEEECCCCccHHHHHHHHHHHhcCCeEEEeCchhhhcccHHHHhcC
Confidence 478999999999997665543 3334455677789999999999999999999999999999998876331
Q ss_pred --chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-----------CCCCEEEEE
Q 010366 308 --GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----------QSKDIVLAL 374 (512)
Q Consensus 308 --~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----------~~~~viiI~ 374 (512)
+........ .+..+.+..|++||||||||++ +..+.+.|++.+++ +..+++||+
T Consensus 533 ~~gyvg~~~~~-~l~~~~~~~p~~VvllDEieka------------~~~~~~~Ll~~ld~g~~~d~~g~~vd~~~~iii~ 599 (731)
T TIGR02639 533 PPGYVGFEQGG-LLTEAVRKHPHCVLLLDEIEKA------------HPDIYNILLQVMDYATLTDNNGRKADFRNVILIM 599 (731)
T ss_pred CCCCcccchhh-HHHHHHHhCCCeEEEEechhhc------------CHHHHHHHHHhhccCeeecCCCcccCCCCCEEEE
Confidence 111111112 2333444567899999999995 33455555555432 245789999
Q ss_pred eeCCCC-------------------------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhh
Q 010366 375 ATNRPG-------------------------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHR 429 (512)
Q Consensus 375 ttN~~~-------------------------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~ 429 (512)
|||... .+.|+|++|++.+|.|.+++.++...|++..+.+....
T Consensus 600 Tsn~g~~~~~~~~~~f~~~~~~~~~~~~~~~~f~pef~~Rid~Vi~F~pLs~e~l~~Iv~~~L~~l~~~----------- 668 (731)
T TIGR02639 600 TSNAGASEMSKPPIGFGSENVESKSDKAIKKLFSPEFRNRLDAIIHFNPLSEEVLEKIVQKFVDELSKQ----------- 668 (731)
T ss_pred CCCcchhhhhhccCCcchhhhHHHHHHHHHhhcChHHHhcCCeEEEcCCCCHHHHHHHHHHHHHHHHHH-----------
Confidence 998731 36789999999999999999999999999999875322
Q ss_pred hhhhhhhhhhhcCCCHHHHHHHHHH--cCCCcHHHHHHHHH
Q 010366 430 LFKSEQQKIEIKGLTDDILMEAAAK--TEGFSGREIAKLMA 468 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~la~~--t~g~s~~dI~~lv~ 468 (512)
+.. .++.+ .+++++++.|+.. ...+.+|.|+.++.
T Consensus 669 -l~~--~~~~l-~i~~~a~~~La~~~~~~~~GaR~l~r~i~ 705 (731)
T TIGR02639 669 -LNE--KNIKL-ELTDDAKKYLAEKGYDEEFGARPLARVIQ 705 (731)
T ss_pred -HHh--CCCeE-EeCHHHHHHHHHhCCCcccCchHHHHHHH
Confidence 111 11222 3889999999986 34566788888874
No 76
>PRK10787 DNA-binding ATP-dependent protease La; Provisional
Probab=99.80 E-value=5.1e-17 Score=181.46 Aligned_cols=268 Identities=18% Similarity=0.221 Sum_probs=165.8
Q ss_pred hHHHHHHHHHHhCCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhc
Q 010366 185 AKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAH 264 (512)
Q Consensus 185 ~~~~~~~i~~~l~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~ 264 (512)
..++++|++..+..|-...... .+ -+......| =++..|.+.+++++..++........
T Consensus 288 ~~~~~~yl~~~~~~pw~~~~~~--~~----~~~~~~~~l--------------~~~~~g~~~vK~~i~~~l~~~~~~~~- 346 (784)
T PRK10787 288 ATVVRGYIDWMVQVPWNARSKV--KK----DLRQAQEIL--------------DTDHYGLERVKDRILEYLAVQSRVNK- 346 (784)
T ss_pred HHHHHHHHHHHHhCCCCCCCcc--cc----cHHHHHHHh--------------hhhccCHHHHHHHHHHHHHHHHhccc-
Confidence 4588999999988764221100 00 111112221 15589999999999876664433222
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC----------CchhHHHHHHHHHHHHHhcCCCcEEEEc
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------LGPQAVTKIHQLFDWAKKSKRGLLLFID 334 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~----------~~~~~~~~l~~lf~~a~~~~~~~vl~lD 334 (512)
.+...++|+||||||||++++.+|..++.+++.++.+.... +.+.....+...+..+.. ...|||||
T Consensus 347 -~~g~~i~l~GppG~GKTtl~~~ia~~l~~~~~~i~~~~~~d~~~i~g~~~~~~g~~~G~~~~~l~~~~~--~~~villD 423 (784)
T PRK10787 347 -IKGPILCLVGPPGVGKTSLGQSIAKATGRKYVRMALGGVRDEAEIRGHRRTYIGSMPGKLIQKMAKVGV--KNPLFLLD 423 (784)
T ss_pred -CCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEEcCCCCCHHHhccchhccCCCCCcHHHHHHHhcCC--CCCEEEEE
Confidence 12236999999999999999999999999999988765432 111222233333333332 23589999
Q ss_pred cchhhhhhcccCCCCHHHHHHHHHHHHH------------cCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHH
Q 010366 335 EADAFLCERNKTYMSEAQRSALNALLFR------------TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQE 402 (512)
Q Consensus 335 Eid~l~~~~~~~~~~~~~~~~l~~ll~~------------~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~ 402 (512)
|+|++.+..... ....|..++.. +..+.+++++|+|+|.. .++|+|++|| .+|.|+.|+.+
T Consensus 424 Eidk~~~~~~g~-----~~~aLlevld~~~~~~~~d~~~~~~~dls~v~~i~TaN~~-~i~~aLl~R~-~ii~~~~~t~e 496 (784)
T PRK10787 424 EIDKMSSDMRGD-----PASALLEVLDPEQNVAFSDHYLEVDYDLSDVMFVATSNSM-NIPAPLLDRM-EVIRLSGYTED 496 (784)
T ss_pred ChhhcccccCCC-----HHHHHHHHhccccEEEEecccccccccCCceEEEEcCCCC-CCCHHHhcce-eeeecCCCCHH
Confidence 999986432211 12333333321 01134789999999987 5999999999 78999999999
Q ss_pred HHHHHHHHHHHH-HhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc-CCCcHHHHHHHH----HHHHHH-Hh
Q 010366 403 ERFKLLKLYLDK-YIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-EGFSGREIAKLM----ASVQAA-VY 475 (512)
Q Consensus 403 er~~Il~~~l~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-~g~s~~dI~~lv----~~~~aa-~~ 475 (512)
+..+|++.++.. .....+. .+ .. -.++++++..|+..+ ..+-.|.|+.++ ....+. ..
T Consensus 497 ek~~Ia~~~L~~k~~~~~~l-~~-----------~~---l~i~~~ai~~ii~~yt~e~GaR~LeR~I~~i~r~~l~~~~~ 561 (784)
T PRK10787 497 EKLNIAKRHLLPKQIERNAL-KK-----------GE---LTVDDSAIIGIIRYYTREAGVRSLEREISKLCRKAVKQLLL 561 (784)
T ss_pred HHHHHHHHhhhHHHHHHhCC-CC-----------Ce---EEECHHHHHHHHHhCCcccCCcHHHHHHHHHHHHHHHHHHh
Confidence 999999999852 2111110 00 00 138899999998643 233346666555 222221 11
Q ss_pred CC--CCCccCHHHHHHHHHHHHHHH
Q 010366 476 GS--ENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 476 ~~--~~~~it~e~~~~al~~~~~~~ 498 (512)
.. ....|+.+++.+.+......+
T Consensus 562 ~~~~~~v~v~~~~~~~~lg~~~~~~ 586 (784)
T PRK10787 562 DKSLKHIEINGDNLHDYLGVQRFDY 586 (784)
T ss_pred cCCCceeeecHHHHHHHhCCCcccc
Confidence 21 124789999999887654443
No 77
>COG2204 AtoC Response regulator containing CheY-like receiver, AAA-type ATPase, and DNA-binding domains [Signal transduction mechanisms]
Probab=99.79 E-value=4e-19 Score=184.07 Aligned_cols=295 Identities=18% Similarity=0.178 Sum_probs=224.5
Q ss_pred hhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhCCC
Q 010366 120 AEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQP 199 (512)
Q Consensus 120 ~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~ 199 (512)
.+|+.+.|++++.. ++++.+......-+..+..+++.+..+..+|.++..+|+++..+|.+.+.+...+++++...
T Consensus 48 ~~~lvl~Di~mp~~----~Gl~ll~~i~~~~~~~pVI~~Tg~g~i~~AV~A~k~GA~Dfl~KP~~~~~L~~~v~ral~~~ 123 (464)
T COG2204 48 PFDLVLLDIRMPGM----DGLELLKEIKSRDPDLPVIVMTGHGDIDTAVEALRLGAFDFLEKPFDLDRLLAIVERALELR 123 (464)
T ss_pred CCCEEEEecCCCCC----chHHHHHHHHhhCCCCCEEEEeCCCCHHHHHHHHhcCcceeeeCCCCHHHHHHHHHHHHHHh
Confidence 67899999999855 77888888877777777888999999999999999999999999999999999999999987
Q ss_pred CccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCC
Q 010366 200 SLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGT 279 (512)
Q Consensus 200 ~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGt 279 (512)
.+..|..+ .. ......+.++||.+..+..+...+...+.... +|||+|++||
T Consensus 124 ~~~~e~~~-~~---------------------~~~~~~~~~liG~S~am~~l~~~i~kvA~s~a------~VLI~GESGt 175 (464)
T COG2204 124 ELQRENRR-SL---------------------KRAKSLGGELVGESPAMQQLRRLIAKVAPSDA------SVLITGESGT 175 (464)
T ss_pred hhhhhhhh-hh---------------------hccccccCCceecCHHHHHHHHHHHHHhCCCC------CEEEECCCCC
Confidence 76655432 00 11223468999999999999988877766554 5999999999
Q ss_pred chHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHH--HH-----------HHHHHHHHHhcCCCcEEEEccchhhhhhc
Q 010366 280 GKTMAARELARKS---GLDYALMTGGDVAPLGPQAV--TK-----------IHQLFDWAKKSKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 280 GKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~--~~-----------l~~lf~~a~~~~~~~vl~lDEid~l~~~~ 343 (512)
||..+|++|.... +.||+.+||+.++....+++ .. -...|+.| .++.||||||..+
T Consensus 176 GKElvAr~IH~~S~R~~~PFVavNcaAip~~l~ESELFGhekGAFTGA~~~r~G~fE~A----~GGTLfLDEI~~m---- 247 (464)
T COG2204 176 GKELVARAIHQASPRAKGPFIAVNCAAIPENLLESELFGHEKGAFTGAITRRIGRFEQA----NGGTLFLDEIGEM---- 247 (464)
T ss_pred cHHHHHHHHHhhCcccCCCceeeecccCCHHHHHHHhhcccccCcCCcccccCcceeEc----CCceEEeeccccC----
Confidence 9999999998775 46999999999876332221 11 11133333 3789999999986
Q ss_pred ccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHH
Q 010366 344 NKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLL 408 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il 408 (512)
+...+..|..+|+.-. ....+|.||++||.. ..+-+.|.-|+ .++.+..|+..+|.+-+
T Consensus 248 -----pl~~Q~kLLRvLqe~~~~rvG~~~~i~vdvRiIaaT~~dL~~~v~~G~FReDLyyRL-nV~~i~iPpLRER~EDI 321 (464)
T COG2204 248 -----PLELQVKLLRVLQEREFERVGGNKPIKVDVRIIAATNRDLEEEVAAGRFREDLYYRL-NVVPLRLPPLRERKEDI 321 (464)
T ss_pred -----CHHHHHHHHHHHHcCeeEecCCCcccceeeEEEeecCcCHHHHHHcCCcHHHHHhhh-ccceecCCcccccchhH
Confidence 6677888888887522 134479999999873 46778888899 89999999999988876
Q ss_pred HHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 010366 409 KLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAA 473 (512)
Q Consensus 409 ~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa 473 (512)
...+..+..... ...+.....++++.+..|..+.+..+.|++.+++..+...
T Consensus 322 p~L~~hfl~~~~-------------~~~~~~~~~~s~~a~~~L~~y~WPGNVREL~N~ver~~il 373 (464)
T COG2204 322 PLLAEHFLKRFA-------------AELGRPPKGFSPEALAALLAYDWPGNVRELENVVERAVIL 373 (464)
T ss_pred HHHHHHHHHHHH-------------HHcCCCCCCCCHHHHHHHHhCCCChHHHHHHHHHHHHHhc
Confidence 666665443211 0112334569999999999988777888888888654443
No 78
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=4.7e-18 Score=181.15 Aligned_cols=206 Identities=20% Similarity=0.243 Sum_probs=152.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 295 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------- 295 (512)
++.|..|++|+|+++++..|..++.. +..+..+|||||||||||++|+++|+.+.+.
T Consensus 7 KyRP~~~~dvvGq~~v~~~L~~~i~~-------~~l~ha~Lf~GppGtGKTTlA~~lA~~l~c~~~~~~~cg~C~sc~~i 79 (504)
T PRK14963 7 RARPITFDEVVGQEHVKEVLLAALRQ-------GRLGHAYLFSGPRGVGKTTTARLIAMAVNCSGEDPKPCGECESCLAV 79 (504)
T ss_pred hhCCCCHHHhcChHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHHhccCCCCCCCCcChhhHHH
Confidence 67888999999999999998776643 2333456999999999999999999987531
Q ss_pred -------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC
Q 010366 296 -------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 365 (512)
Q Consensus 296 -------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 365 (512)
++.++.+. .. ....++.+.+.+.. ..++.||||||+|.+ ....++.|+..+++
T Consensus 80 ~~~~h~dv~el~~~~--~~---~vd~iR~l~~~~~~~p~~~~~kVVIIDEad~l------------s~~a~naLLk~LEe 142 (504)
T PRK14963 80 RRGAHPDVLEIDAAS--NN---SVEDVRDLREKVLLAPLRGGRKVYILDEAHMM------------SKSAFNALLKTLEE 142 (504)
T ss_pred hcCCCCceEEecccc--cC---CHHHHHHHHHHHhhccccCCCeEEEEECcccc------------CHHHHHHHHHHHHh
Confidence 33344321 11 23344444443332 234679999999975 23457788888887
Q ss_pred CCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCH
Q 010366 366 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 445 (512)
Q Consensus 366 ~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
.+.++++|++|+.+..+.+.+.+|+ ..+.|++|+.++....+...+...... +++
T Consensus 143 p~~~t~~Il~t~~~~kl~~~I~SRc-~~~~f~~ls~~el~~~L~~i~~~egi~------------------------i~~ 197 (504)
T PRK14963 143 PPEHVIFILATTEPEKMPPTILSRT-QHFRFRRLTEEEIAGKLRRLLEAEGRE------------------------AEP 197 (504)
T ss_pred CCCCEEEEEEcCChhhCChHHhcce-EEEEecCCCHHHHHHHHHHHHHHcCCC------------------------CCH
Confidence 7788999999999999999999999 789999999999999999988764322 789
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 446 DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 446 ~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+.+..|+..+.| +.+.+..++..+.+ + ...||.+++.+++.
T Consensus 198 ~Al~~ia~~s~G-dlR~aln~Lekl~~--~---~~~It~~~V~~~l~ 238 (504)
T PRK14963 198 EALQLVARLADG-AMRDAESLLERLLA--L---GTPVTRKQVEEALG 238 (504)
T ss_pred HHHHHHHHHcCC-CHHHHHHHHHHHHh--c---CCCCCHHHHHHHHC
Confidence 999999999876 56666655544322 2 24688888877643
No 79
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.1e-18 Score=182.27 Aligned_cols=210 Identities=21% Similarity=0.258 Sum_probs=151.6
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.+.+|++|||++.++..|...+.. +.-+.++||+||||||||++|+.+|+.+.+.
T Consensus 8 ~KyRP~sf~dIiGQe~v~~~L~~ai~~-------~ri~ha~Lf~GPpG~GKTtiArilAk~L~C~~~~~~~pCg~C~sC~ 80 (624)
T PRK14959 8 ARYRPQTFAEVAGQETVKAILSRAAQE-------NRVAPAYLFSGTRGVGKTTIARIFAKALNCETAPTGEPCNTCEQCR 80 (624)
T ss_pred HHhCCCCHHHhcCCHHHHHHHHHHHHc-------CCCCceEEEECCCCCCHHHHHHHHHHhccccCCCCCCCCcccHHHH
Confidence 367888999999999998888766532 2223479999999999999999999998652
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCC
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 366 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 366 (512)
++.+++.. ..+.+..+.+...+.......++.||||||+|.|. ...++.|+..+++.
T Consensus 81 ~i~~g~hpDv~eId~a~--~~~Id~iR~L~~~~~~~p~~g~~kVIIIDEad~Lt------------~~a~naLLk~LEEP 146 (624)
T PRK14959 81 KVTQGMHVDVVEIDGAS--NRGIDDAKRLKEAIGYAPMEGRYKVFIIDEAHMLT------------REAFNALLKTLEEP 146 (624)
T ss_pred HHhcCCCCceEEEeccc--ccCHHHHHHHHHHHHhhhhcCCceEEEEEChHhCC------------HHHHHHHHHHhhcc
Confidence 33343321 12223333343333333333456799999999972 34567788888877
Q ss_pred CCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHH
Q 010366 367 SKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDD 446 (512)
Q Consensus 367 ~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
..+++||++||.+..+.+.+++|+ ..+.|++++.++...++...+..... .++++
T Consensus 147 ~~~~ifILaTt~~~kll~TI~SRc-q~i~F~pLs~~eL~~~L~~il~~egi------------------------~id~e 201 (624)
T PRK14959 147 PARVTFVLATTEPHKFPVTIVSRC-QHFTFTRLSEAGLEAHLTKVLGREGV------------------------DYDPA 201 (624)
T ss_pred CCCEEEEEecCChhhhhHHHHhhh-hccccCCCCHHHHHHHHHHHHHHcCC------------------------CCCHH
Confidence 788999999999999999999999 78899999999999999887765322 28899
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 447 ILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 447 ~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
.+..|+..+.| +.+++..++..+ +.. ....||.+++..++
T Consensus 202 al~lIA~~s~G-dlR~Al~lLeql--l~~--g~~~It~d~V~~~l 241 (624)
T PRK14959 202 AVRLIARRAAG-SVRDSMSLLGQV--LAL--GESRLTIDGARGVL 241 (624)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHH--HHh--cCCCcCHHHHHHHh
Confidence 99999998866 555555555432 222 22478888776654
No 80
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=7.1e-18 Score=180.12 Aligned_cols=208 Identities=20% Similarity=0.230 Sum_probs=151.8
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC----------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---------------- 294 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~---------------- 294 (512)
.++.|..|+++||++.++..+...+. .+..+..+||+||||||||++|+.+|+.+.+
T Consensus 8 ~KyRP~~f~diiGq~~~v~~L~~~i~-------~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~c~~~~~~~pCg~C~sC~ 80 (546)
T PRK14957 8 RKYRPQSFAEVAGQQHALNSLVHALE-------TQKVHHAYLFTGTRGVGKTTLGRLLAKCLNCKTGVTAEPCNKCENCV 80 (546)
T ss_pred HHHCcCcHHHhcCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHH
Confidence 36778899999999999998876553 2233346899999999999999999998764
Q ss_pred --------CeEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 295 --------DYALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 295 --------~~~~v~~~~~~~~~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
.++.+++.. ..+ ...++.+.+.+. ...++.|+||||+|.+ ....++.|+..+
T Consensus 81 ~i~~~~~~dlieidaas--~~g---vd~ir~ii~~~~~~p~~g~~kViIIDEa~~l------------s~~a~naLLK~L 143 (546)
T PRK14957 81 AINNNSFIDLIEIDAAS--RTG---VEETKEILDNIQYMPSQGRYKVYLIDEVHML------------SKQSFNALLKTL 143 (546)
T ss_pred HHhcCCCCceEEeeccc--ccC---HHHHHHHHHHHHhhhhcCCcEEEEEechhhc------------cHHHHHHHHHHH
Confidence 222232211 112 223344444333 2334679999999986 234677888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+..++||++|+.+..+.+.+++|+ ..++|.+++.++....+...+..... .+
T Consensus 144 Eepp~~v~fIL~Ttd~~kil~tI~SRc-~~~~f~~Ls~~eI~~~L~~il~~egi------------------------~~ 198 (546)
T PRK14957 144 EEPPEYVKFILATTDYHKIPVTILSRC-IQLHLKHISQADIKDQLKIILAKENI------------------------NS 198 (546)
T ss_pred hcCCCCceEEEEECChhhhhhhHHHhe-eeEEeCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888888999998888888988999999 99999999999999988888766432 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+++.+..|+..+.| +.+++..++..+.+ +.. ..||.+++++++.
T Consensus 199 e~~Al~~Ia~~s~G-dlR~alnlLek~i~--~~~--~~It~~~V~~~l~ 242 (546)
T PRK14957 199 DEQSLEYIAYHAKG-SLRDALSLLDQAIS--FCG--GELKQAQIKQMLG 242 (546)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHHH--hcc--CCCCHHHHHHHHc
Confidence 89999999999865 67777666653332 323 4688888877543
No 81
>KOG0735 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.79 E-value=7.9e-18 Score=176.82 Aligned_cols=239 Identities=17% Similarity=0.219 Sum_probs=179.0
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC----CCeEEEeCCCCCCCc-hhHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----LDYALMTGGDVAPLG-PQAVT 313 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~----~~~~~v~~~~~~~~~-~~~~~ 313 (512)
.+++..+..++...+ ....+.....++||+||+|||||.|++++++++. +.+.+++|+.+.... .....
T Consensus 408 ~d~i~~~s~kke~~n------~~~spv~~~~~Ill~G~~GsGKT~L~kal~~~~~k~~~~hv~~v~Cs~l~~~~~e~iQk 481 (952)
T KOG0735|consen 408 HDFIQVPSYKKENAN------QELSPVFRHGNILLNGPKGSGKTNLVKALFDYYSKDLIAHVEIVSCSTLDGSSLEKIQK 481 (952)
T ss_pred Cceeecchhhhhhhh------hhcccccccccEEEeCCCCCCHhHHHHHHHHHhccccceEEEEEechhccchhHHHHHH
Confidence 566666766666543 1112233446899999999999999999999976 446678888876532 22334
Q ss_pred HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC-CCHH----HHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHc
Q 010366 314 KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY-MSEA----QRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD 388 (512)
Q Consensus 314 ~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~-~~~~----~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~ 388 (512)
.+..+|..+..+. |+||+||++|.|++..+..+ .... ...++++++.........+.+|+|.+....++|-+.+
T Consensus 482 ~l~~vfse~~~~~-PSiIvLDdld~l~~~s~~e~~q~~~~~~rla~flnqvi~~y~~~~~~ia~Iat~qe~qtl~~~L~s 560 (952)
T KOG0735|consen 482 FLNNVFSEALWYA-PSIIVLDDLDCLASASSNENGQDGVVSERLAAFLNQVIKIYLKRNRKIAVIATGQELQTLNPLLVS 560 (952)
T ss_pred HHHHHHHHHHhhC-CcEEEEcchhhhhccCcccCCcchHHHHHHHHHHHHHHHHHHccCcEEEEEEechhhhhcChhhcC
Confidence 5678888888777 89999999999988443322 1122 3334555555555666778999999999999998887
Q ss_pred --cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHH
Q 010366 389 --RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKL 466 (512)
Q Consensus 389 --R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~l 466 (512)
+|+.++.+|.|...+|..|++..+++.... ...++++.++..|+||.+.|+..+
T Consensus 561 ~~~Fq~~~~L~ap~~~~R~~IL~~~~s~~~~~------------------------~~~~dLd~ls~~TEGy~~~DL~if 616 (952)
T KOG0735|consen 561 PLLFQIVIALPAPAVTRRKEILTTIFSKNLSD------------------------ITMDDLDFLSVKTEGYLATDLVIF 616 (952)
T ss_pred ccceEEEEecCCcchhHHHHHHHHHHHhhhhh------------------------hhhHHHHHHHHhcCCccchhHHHH
Confidence 899999999999999999999999875422 455677889999999999999999
Q ss_pred HHHHHHHHh----CCCCCccCHHHHHHHHHHHHHHHHHHHHHhhhC
Q 010366 467 MASVQAAVY----GSENCVLDPSLFREVVDYKVAEHQQRRKLAAAG 508 (512)
Q Consensus 467 v~~~~aa~~----~~~~~~it~e~~~~al~~~~~~~~~~~~~~~~~ 508 (512)
+..+...++ ......+|.++|.++++.+++...+..++.++-
T Consensus 617 VeRai~~a~leris~~~klltke~f~ksL~~F~P~aLR~ik~~k~t 662 (952)
T KOG0735|consen 617 VERAIHEAFLERISNGPKLLTKELFEKSLKDFVPLALRGIKLVKST 662 (952)
T ss_pred HHHHHHHHHHHHhccCcccchHHHHHHHHHhcChHHhhhccccccC
Confidence 955544433 223358999999999999999888887776553
No 82
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=5.2e-18 Score=182.32 Aligned_cols=208 Identities=21% Similarity=0.257 Sum_probs=155.5
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.|.+|+++||++.+++.+...+. .+..+..+||+||||||||++|+.+|+.+++.
T Consensus 8 ~k~rP~~f~divGq~~v~~~L~~~i~-------~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pcg~C~~C~ 80 (527)
T PRK14969 8 RKWRPKSFSELVGQEHVVRALTNALE-------QQRLHHAYLFTGTRGVGKTTLARILAKSLNCETGVTATPCGVCSACL 80 (527)
T ss_pred HHhCCCcHHHhcCcHHHHHHHHHHHH-------cCCCCEEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHH
Confidence 36778899999999999998876653 23344468999999999999999999998652
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.++++ .......++.+.+.+... .++.|+||||+|.+. ...+|.||..+
T Consensus 81 ~i~~~~~~d~~ei~~~-----~~~~vd~ir~l~~~~~~~p~~~~~kVvIIDEad~ls------------~~a~naLLK~L 143 (527)
T PRK14969 81 EIDSGRFVDLIEVDAA-----SNTQVDAMRELLDNAQYAPTRGRFKVYIIDEVHMLS------------KSAFNAMLKTL 143 (527)
T ss_pred HHhcCCCCceeEeecc-----ccCCHHHHHHHHHHHhhCcccCCceEEEEcCcccCC------------HHHHHHHHHHH
Confidence 1222211 112344566666655432 335699999999862 34578888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.+++||++|+.+..+.+.+++|| ..+.|++++.++....+...+..... .+
T Consensus 144 Eepp~~~~fIL~t~d~~kil~tI~SRc-~~~~f~~l~~~~i~~~L~~il~~egi------------------------~~ 198 (527)
T PRK14969 144 EEPPEHVKFILATTDPQKIPVTVLSRC-LQFNLKQMPPPLIVSHLQHILEQENI------------------------PF 198 (527)
T ss_pred hCCCCCEEEEEEeCChhhCchhHHHHH-HHHhcCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888889999999999999998999999 99999999999999888887765322 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+++.+..|+..+.| +.+++..++..+. +++ ...|+.+++...+.
T Consensus 199 ~~~al~~la~~s~G-slr~al~lldqai--~~~--~~~I~~~~v~~~~~ 242 (527)
T PRK14969 199 DATALQLLARAAAG-SMRDALSLLDQAI--AYG--GGTVNESEVRAMLG 242 (527)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH--Hhc--CCCcCHHHHHHHHC
Confidence 88899999998866 7777777775333 333 35788888877664
No 83
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=99.79 E-value=1.6e-17 Score=168.66 Aligned_cols=214 Identities=16% Similarity=0.259 Sum_probs=144.3
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchh
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQ 310 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~ 310 (512)
.++.|.+|++++|++++...+..++. .+..+..+||+||||+|||++|+++++.++.+++.+++++ .. ...
T Consensus 13 ~kyrP~~~~~~~~~~~~~~~l~~~~~-------~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~~-~~-~~~ 83 (316)
T PHA02544 13 QKYRPSTIDECILPAADKETFKSIVK-------KGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGSD-CR-IDF 83 (316)
T ss_pred eccCCCcHHHhcCcHHHHHHHHHHHh-------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccCc-cc-HHH
Confidence 36888999999999999999877663 2333345667999999999999999999999999999877 22 111
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccc
Q 010366 311 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRI 390 (512)
Q Consensus 311 ~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~ 390 (512)
....+............+.+|+|||+|.+. .......+..++ +....++.||+|||.+..+.+++.+||
T Consensus 84 i~~~l~~~~~~~~~~~~~~vliiDe~d~l~--------~~~~~~~L~~~l---e~~~~~~~~Ilt~n~~~~l~~~l~sR~ 152 (316)
T PHA02544 84 VRNRLTRFASTVSLTGGGKVIIIDEFDRLG--------LADAQRHLRSFM---EAYSKNCSFIITANNKNGIIEPLRSRC 152 (316)
T ss_pred HHHHHHHHHHhhcccCCCeEEEEECccccc--------CHHHHHHHHHHH---HhcCCCceEEEEcCChhhchHHHHhhc
Confidence 111122221111112347899999999862 112333444443 445677889999999999999999999
Q ss_pred cceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 010366 391 DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASV 470 (512)
Q Consensus 391 ~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~ 470 (512)
..+.|+.|+.+++..++...+....... . ..+ ..++++++..++....| +++.++..+
T Consensus 153 -~~i~~~~p~~~~~~~il~~~~~~~~~~~------------~--~~~---~~i~~~al~~l~~~~~~----d~r~~l~~l 210 (316)
T PHA02544 153 -RVIDFGVPTKEEQIEMMKQMIVRCKGIL------------E--AEG---VEVDMKVLAALVKKNFP----DFRRTINEL 210 (316)
T ss_pred -eEEEeCCCCHHHHHHHHHHHHHHHHHHH------------H--hcC---CCCCHHHHHHHHHhcCC----CHHHHHHHH
Confidence 6899999999999998887665532110 0 001 12788889999987655 445555444
Q ss_pred HHHHhCCCCCccCHHHHHH
Q 010366 471 QAAVYGSENCVLDPSLFRE 489 (512)
Q Consensus 471 ~aa~~~~~~~~it~e~~~~ 489 (512)
+..... ..++.+++..
T Consensus 211 ~~~~~~---~~i~~~~l~~ 226 (316)
T PHA02544 211 QRYAST---GKIDAGILSE 226 (316)
T ss_pred HHHHcc---CCCCHHHHHH
Confidence 444322 3566655444
No 84
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=99.79 E-value=8.9e-18 Score=181.71 Aligned_cols=206 Identities=24% Similarity=0.295 Sum_probs=154.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 295 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------- 295 (512)
++.|.+|++|+|++++.+.+...+.. +..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 9 k~rP~~f~~viGq~~v~~~L~~~i~~-------~~~~hayLf~Gp~GtGKTt~Ak~lAkal~c~~~~~~~pC~~C~~C~~ 81 (559)
T PRK05563 9 KWRPQTFEDVVGQEHITKTLKNAIKQ-------GKISHAYLFSGPRGTGKTSAAKIFAKAVNCLNPPDGEPCNECEICKA 81 (559)
T ss_pred HhCCCcHHhccCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccHHHHH
Confidence 57888999999999999988766532 3344568999999999999999999987532
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 296 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 296 --------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
++.++++ ...+...++.+.+.+.. ..++.|++|||+|.|. ...++.|+..++
T Consensus 82 i~~g~~~dv~eidaa-----s~~~vd~ir~i~~~v~~~p~~~~~kViIIDE~~~Lt------------~~a~naLLKtLE 144 (559)
T PRK05563 82 ITNGSLMDVIEIDAA-----SNNGVDEIRDIRDKVKYAPSEAKYKVYIIDEVHMLS------------TGAFNALLKTLE 144 (559)
T ss_pred HhcCCCCCeEEeecc-----ccCCHHHHHHHHHHHhhCcccCCeEEEEEECcccCC------------HHHHHHHHHHhc
Confidence 2233221 11234455666665543 2346799999999872 346788888888
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 365 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+.+.+++||++|+.++.+.+.+++|+ ..+.|++|+.++....+...+...... ++
T Consensus 145 epp~~~ifIlatt~~~ki~~tI~SRc-~~~~f~~~~~~ei~~~L~~i~~~egi~------------------------i~ 199 (559)
T PRK05563 145 EPPAHVIFILATTEPHKIPATILSRC-QRFDFKRISVEDIVERLKYILDKEGIE------------------------YE 199 (559)
T ss_pred CCCCCeEEEEEeCChhhCcHHHHhHh-eEEecCCCCHHHHHHHHHHHHHHcCCC------------------------CC
Confidence 88889999999999999999999999 789999999999999999888764322 78
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 445 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 445 ~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++.+..++..+.| +.++...++..+. .++ +..||.+++..++
T Consensus 200 ~~al~~ia~~s~G-~~R~al~~Ldq~~--~~~--~~~It~~~V~~vl 241 (559)
T PRK05563 200 DEALRLIARAAEG-GMRDALSILDQAI--SFG--DGKVTYEDALEVT 241 (559)
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHHH--Hhc--cCCCCHHHHHHHh
Confidence 8999999998876 7777777765333 233 2468877766543
No 85
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.79 E-value=8.5e-18 Score=181.13 Aligned_cols=207 Identities=19% Similarity=0.207 Sum_probs=151.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 295 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------- 295 (512)
++.+.+|++|||++.+++.|...+. .+..+..+||+||+|||||++|+.+|+.+.+.
T Consensus 6 kyRP~~f~eivGq~~i~~~L~~~i~-------~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~c~~~~~~~pCg~C~~C~~ 78 (584)
T PRK14952 6 KYRPATFAEVVGQEHVTEPLSSALD-------AGRINHAYLFSGPRGCGKTSSARILARSLNCAQGPTATPCGVCESCVA 78 (584)
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhccccCCCCCcccccHHHHH
Confidence 6788899999999999999877663 23333458999999999999999999987642
Q ss_pred ----------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH
Q 010366 296 ----------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 362 (512)
Q Consensus 296 ----------~~~v~~~~~~~~~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 362 (512)
++.++++. .. +...++.+.+.+. ...++.|+||||+|.|. ...+|.||..
T Consensus 79 i~~~~~~~~dvieidaas--~~---gvd~iRel~~~~~~~P~~~~~KVvIIDEah~Lt------------~~A~NALLK~ 141 (584)
T PRK14952 79 LAPNGPGSIDVVELDAAS--HG---GVDDTRELRDRAFYAPAQSRYRIFIVDEAHMVT------------TAGFNALLKI 141 (584)
T ss_pred hhcccCCCceEEEecccc--cc---CHHHHHHHHHHHHhhhhcCCceEEEEECCCcCC------------HHHHHHHHHH
Confidence 22222211 11 2334444443332 23456799999999972 3467888988
Q ss_pred cCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcC
Q 010366 363 TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 442 (512)
Q Consensus 363 ~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (512)
+++.+.+++||++|+.+..+.+.+.+|+ ..+.|.+++.++....+...+..... .
T Consensus 142 LEEpp~~~~fIL~tte~~kll~TI~SRc-~~~~F~~l~~~~i~~~L~~i~~~egi------------------------~ 196 (584)
T PRK14952 142 VEEPPEHLIFIFATTEPEKVLPTIRSRT-HHYPFRLLPPRTMRALIARICEQEGV------------------------V 196 (584)
T ss_pred HhcCCCCeEEEEEeCChHhhHHHHHHhc-eEEEeeCCCHHHHHHHHHHHHHHcCC------------------------C
Confidence 9888999999999999999999999998 89999999999999998888876432 2
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 443 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 443 ~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++++.+..++..+.| +.+++..++..+.+ +.. ...||.+++...+
T Consensus 197 i~~~al~~Ia~~s~G-dlR~aln~Ldql~~--~~~-~~~It~~~v~~ll 241 (584)
T PRK14952 197 VDDAVYPLVIRAGGG-SPRDTLSVLDQLLA--GAA-DTHVTYQRALGLL 241 (584)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHHHh--ccC-CCCcCHHHHHHHH
Confidence 788999999988755 77777777754432 222 3567776666553
No 86
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=99.78 E-value=8.6e-18 Score=179.65 Aligned_cols=206 Identities=21% Similarity=0.251 Sum_probs=151.5
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC----------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---------------- 294 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~---------------- 294 (512)
.++.|.+|++++|++.++..+...+. .+..+.++||+||||||||++|+.+|+.+.+
T Consensus 8 ~KyRP~~F~dIIGQe~iv~~L~~aI~-------~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~C~~~~~~~~Cg~C~sCr 80 (605)
T PRK05896 8 RKYRPHNFKQIIGQELIKKILVNAIL-------NNKLTHAYIFSGPRGIGKTSIAKIFAKAINCLNPKDGDCCNSCSVCE 80 (605)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHH
Confidence 36788899999999999988866542 2344467999999999999999999998753
Q ss_pred --------CeEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 295 --------DYALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 295 --------~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
.++.++++. ..+...++.+...+... .++.|++|||+|.+. ....+.|+..+
T Consensus 81 ~i~~~~h~DiieIdaas-----~igVd~IReIi~~~~~~P~~~~~KVIIIDEad~Lt------------~~A~NaLLKtL 143 (605)
T PRK05896 81 SINTNQSVDIVELDAAS-----NNGVDEIRNIIDNINYLPTTFKYKVYIIDEAHMLS------------TSAWNALLKTL 143 (605)
T ss_pred HHHcCCCCceEEecccc-----ccCHHHHHHHHHHHHhchhhCCcEEEEEechHhCC------------HHHHHHHHHHH
Confidence 122232211 11233455555444432 235699999999872 23567788888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++++..+++|++|+.+..+.+.+++|+ ..+.|++|+.++....+...+..... .+
T Consensus 144 EEPp~~tvfIL~Tt~~~KLl~TI~SRc-q~ieF~~Ls~~eL~~~L~~il~kegi------------------------~I 198 (605)
T PRK05896 144 EEPPKHVVFIFATTEFQKIPLTIISRC-QRYNFKKLNNSELQELLKSIAKKEKI------------------------KI 198 (605)
T ss_pred HhCCCcEEEEEECCChHhhhHHHHhhh-hhcccCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888889999999999999999999999 78999999999999999988866432 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 490 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~a 490 (512)
+++.+..++..+.| +++++..++..+.. +.. ..||.+++..+
T Consensus 199 s~eal~~La~lS~G-dlR~AlnlLekL~~--y~~--~~It~e~V~el 240 (605)
T PRK05896 199 EDNAIDKIADLADG-SLRDGLSILDQLST--FKN--SEIDIEDINKT 240 (605)
T ss_pred CHHHHHHHHHHcCC-cHHHHHHHHHHHHh--hcC--CCCCHHHHHHH
Confidence 88899999999866 67777777765433 222 23888777764
No 87
>PRK06893 DNA replication initiation factor; Validated
Probab=99.78 E-value=1.5e-17 Score=160.87 Aligned_cols=211 Identities=12% Similarity=0.140 Sum_probs=138.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
..++.+|+++++.+... .+..+.... .. ...+.++||||||||||||++++|+++ +....+++........
T Consensus 9 ~~~~~~fd~f~~~~~~~-~~~~~~~~~---~~--~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~~~~~~~~~ 82 (229)
T PRK06893 9 QIDDETLDNFYADNNLL-LLDSLRKNF---ID--LQQPFFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIPLSKSQYFS 82 (229)
T ss_pred CCCcccccccccCChHH-HHHHHHHHh---hc--cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEeeHHHhhhhh
Confidence 45677899999887543 222222221 11 122368999999999999999999885 3455555543211111
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee-CCCCCC---CH
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-NRPGDL---DS 384 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt-N~~~~l---~~ 384 (512)
..++.. .....+|+|||++.+.+.. .....+..+++...+.. ..++|.|+ ..|..+ .|
T Consensus 83 -------~~~~~~---~~~~dlLilDDi~~~~~~~-------~~~~~l~~l~n~~~~~~-~~illits~~~p~~l~~~~~ 144 (229)
T PRK06893 83 -------PAVLEN---LEQQDLVCLDDLQAVIGNE-------EWELAIFDLFNRIKEQG-KTLLLISADCSPHALSIKLP 144 (229)
T ss_pred -------HHHHhh---cccCCEEEEeChhhhcCCh-------HHHHHHHHHHHHHHHcC-CcEEEEeCCCChHHccccch
Confidence 112222 2336799999999874322 22334555555543322 33444444 446554 48
Q ss_pred HHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
.+.+|+. .++.+++|+.+++..|++..+..... .+++++++.|+.+..| +.+.
T Consensus 145 ~L~sRl~~g~~~~l~~pd~e~~~~iL~~~a~~~~l------------------------~l~~~v~~~L~~~~~~-d~r~ 199 (229)
T PRK06893 145 DLASRLTWGEIYQLNDLTDEQKIIVLQRNAYQRGI------------------------ELSDEVANFLLKRLDR-DMHT 199 (229)
T ss_pred hHHHHHhcCCeeeCCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhccC-CHHH
Confidence 9999873 68899999999999999988865322 2899999999999876 7888
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 463 I~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+..++..+..++.. ....||.+.+++++.
T Consensus 200 l~~~l~~l~~~~~~-~~~~it~~~v~~~L~ 228 (229)
T PRK06893 200 LFDALDLLDKASLQ-AQRKLTIPFVKEILG 228 (229)
T ss_pred HHHHHHHHHHHHHh-cCCCCCHHHHHHHhc
Confidence 88888766544443 235799999998874
No 88
>KOG0743 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.77 E-value=6.9e-18 Score=171.17 Aligned_cols=175 Identities=23% Similarity=0.284 Sum_probs=132.2
Q ss_pred ccCCCCCCccccChHHHHHHH-HHHHHhh---chhhcCCCC-cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIR-QLSGATA---NTKAHNAPF-RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~-~~~~~~~---~~~~~~~p~-~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
...+.+|+.++..++.++.|. ++..... ..++.|.|+ ++.|||||||||||+++-|+|+.++.+++-++.+.+..
T Consensus 194 f~HpstF~TlaMd~~~K~~I~~Dl~~F~k~k~~YkrvGkawKRGYLLYGPPGTGKSS~IaAmAn~L~ydIydLeLt~v~~ 273 (457)
T KOG0743|consen 194 FPHPSTFETLAMDPDLKERIIDDLDDFIKGKDFYKRVGKAWKRGYLLYGPPGTGKSSFIAAMANYLNYDIYDLELTEVKL 273 (457)
T ss_pred CCCCCCccccccChhHHHHHHHHHHHHHhcchHHHhcCcchhccceeeCCCCCCHHHHHHHHHhhcCCceEEeeeccccC
Confidence 345588999999999998884 4444443 466677777 59999999999999999999999999999888766543
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC-----C-HHHHHHHHHHHHHcC----CCCCCEEEEEee
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM-----S-EAQRSALNALLFRTG----DQSKDIVLALAT 376 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~-----~-~~~~~~l~~ll~~~~----~~~~~viiI~tt 376 (512)
.. .++.++..+ .+.+||+|+|||+-+..+..... . ....-+|..||+-++ .....-+||+||
T Consensus 274 n~-----dLr~LL~~t---~~kSIivIEDIDcs~~l~~~~~~~~~~~~~~~~~VTlSGLLNfiDGlwSscg~ERIivFTT 345 (457)
T KOG0743|consen 274 DS-----DLRHLLLAT---PNKSILLIEDIDCSFDLRERRKKKKENFEGDLSRVTLSGLLNFLDGLWSSCGDERIIVFTT 345 (457)
T ss_pred cH-----HHHHHHHhC---CCCcEEEEeecccccccccccccccccccCCcceeehHHhhhhhccccccCCCceEEEEec
Confidence 21 256665444 34689999999986543322110 0 012345666776665 233457899999
Q ss_pred CCCCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHH
Q 010366 377 NRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDK 414 (512)
Q Consensus 377 N~~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~ 414 (512)
|.++.|||||+| |+|.+|++...+......++..++..
T Consensus 346 Nh~EkLDPALlRpGRmDmhI~mgyCtf~~fK~La~nYL~~ 385 (457)
T KOG0743|consen 346 NHKEKLDPALLRPGRMDMHIYMGYCTFEAFKTLASNYLGI 385 (457)
T ss_pred CChhhcCHhhcCCCcceeEEEcCCCCHHHHHHHHHHhcCC
Confidence 999999999999 99999999999999999999998853
No 89
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=99.77 E-value=1.3e-17 Score=186.75 Aligned_cols=227 Identities=19% Similarity=0.170 Sum_probs=161.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 302 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~ 302 (512)
..+..++.++|+++....+..++... ...+++|+||||||||++|+++|..+ +..++.++++
T Consensus 176 ~r~~~l~~~igr~~ei~~~~~~L~~~--------~~~n~lL~G~pG~GKT~l~~~la~~~~~~~~p~~l~~~~~~~~~~~ 247 (731)
T TIGR02639 176 AKNGKIDPLIGREDELERTIQVLCRR--------KKNNPLLVGEPGVGKTAIAEGLALRIAEGKVPENLKNAKIYSLDMG 247 (731)
T ss_pred HhcCCCCcccCcHHHHHHHHHHHhcC--------CCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCeEEEecHH
Confidence 34567899999999888776554211 22479999999999999999999987 5678888876
Q ss_pred CCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 303 DVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 303 ~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.+. .+.++....+..+|+.+... .++||||||+|.|++.....+.+....+.|... + ..+.+.+|++||..
T Consensus 248 ~l~a~~~~~g~~e~~l~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~~~~~~~~~~L~~~---l--~~g~i~~IgaTt~~ 321 (731)
T TIGR02639 248 SLLAGTKYRGDFEERLKAVVSEIEKE-PNAILFIDEIHTIVGAGATSGGSMDASNLLKPA---L--SSGKLRCIGSTTYE 321 (731)
T ss_pred HHhhhccccchHHHHHHHHHHHHhcc-CCeEEEEecHHHHhccCCCCCccHHHHHHHHHH---H--hCCCeEEEEecCHH
Confidence 654 35567888999999988765 378999999999987654322122223333333 3 35678999999863
Q ss_pred -----CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH
Q 010366 380 -----GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 454 (512)
Q Consensus 380 -----~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 454 (512)
...|+++.||| ..|.++.|+.+++..|++.....+..... -.++++++..++..
T Consensus 322 e~~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~e~~~~--------------------v~i~~~al~~~~~l 380 (731)
T TIGR02639 322 EYKNHFEKDRALSRRF-QKIDVGEPSIEETVKILKGLKEKYEEFHH--------------------VKYSDEALEAAVEL 380 (731)
T ss_pred HHHHHhhhhHHHHHhC-ceEEeCCCCHHHHHHHHHHHHHHHHhccC--------------------cccCHHHHHHHHHh
Confidence 35799999999 58999999999999999988766432211 12899999999988
Q ss_pred cCCCcH-----HHHHHHHHHHHH-HHhC---CCCCccCHHHHHHHHHHH
Q 010366 455 TEGFSG-----REIAKLMASVQA-AVYG---SENCVLDPSLFREVVDYK 494 (512)
Q Consensus 455 t~g~s~-----~dI~~lv~~~~a-a~~~---~~~~~it~e~~~~al~~~ 494 (512)
+..|-+ .--..++..+.+ .... .....||.+++..++...
T Consensus 381 s~ryi~~r~~P~kai~lld~a~a~~~~~~~~~~~~~v~~~~i~~~i~~~ 429 (731)
T TIGR02639 381 SARYINDRFLPDKAIDVIDEAGASFRLRPKAKKKANVSVKDIENVVAKM 429 (731)
T ss_pred hhcccccccCCHHHHHHHHHhhhhhhcCcccccccccCHHHHHHHHHHH
Confidence 766543 222233332222 1111 123569999999999876
No 90
>PRK13342 recombination factor protein RarA; Reviewed
Probab=99.77 E-value=3.1e-17 Score=172.39 Aligned_cols=207 Identities=26% Similarity=0.372 Sum_probs=145.5
Q ss_pred ccCCCCCCccccChHHHHH---HHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKR---IRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~---l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~ 308 (512)
...|.+|+++||++++... +..++. .+ .+.+++|+||||||||++|+++|+.++.+|+.+++...
T Consensus 5 ~~RP~~l~d~vGq~~~v~~~~~L~~~i~-------~~-~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~---- 72 (413)
T PRK13342 5 RMRPKTLDEVVGQEHLLGPGKPLRRMIE-------AG-RLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTS---- 72 (413)
T ss_pred hhCCCCHHHhcCcHHHhCcchHHHHHHH-------cC-CCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccc----
Confidence 4566789999999998766 544442 11 22479999999999999999999999999999987642
Q ss_pred hhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee--CCCCCCC
Q 010366 309 PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLD 383 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt--N~~~~l~ 383 (512)
....++.+++.+.. ...+.||||||+|.+ ....+.. |+..++ ...+++|++| |....++
T Consensus 73 --~~~~ir~ii~~~~~~~~~g~~~vL~IDEi~~l---------~~~~q~~---LL~~le--~~~iilI~att~n~~~~l~ 136 (413)
T PRK13342 73 --GVKDLREVIEEARQRRSAGRRTILFIDEIHRF---------NKAQQDA---LLPHVE--DGTITLIGATTENPSFEVN 136 (413)
T ss_pred --cHHHHHHHHHHHHHhhhcCCceEEEEechhhh---------CHHHHHH---HHHHhh--cCcEEEEEeCCCChhhhcc
Confidence 22344455555432 224689999999997 2233333 343343 3456677654 4456899
Q ss_pred HHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHH
Q 010366 384 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 463 (512)
Q Consensus 384 ~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI 463 (512)
+++++|| .++.|++|+.++...+++..+..... ++ ..++++.+..++..+.| +++.+
T Consensus 137 ~aL~SR~-~~~~~~~ls~e~i~~lL~~~l~~~~~-------------------~~--i~i~~~al~~l~~~s~G-d~R~a 193 (413)
T PRK13342 137 PALLSRA-QVFELKPLSEEDIEQLLKRALEDKER-------------------GL--VELDDEALDALARLANG-DARRA 193 (413)
T ss_pred HHHhccc-eeeEeCCCCHHHHHHHHHHHHHHhhc-------------------CC--CCCCHHHHHHHHHhCCC-CHHHH
Confidence 9999999 88999999999999999988765311 00 12788999999998854 55555
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 464 AKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 464 ~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
..++..+. .. ...||.+++..++...
T Consensus 194 ln~Le~~~---~~--~~~It~~~v~~~~~~~ 219 (413)
T PRK13342 194 LNLLELAA---LG--VDSITLELLEEALQKR 219 (413)
T ss_pred HHHHHHHH---Hc--cCCCCHHHHHHHHhhh
Confidence 55553332 22 3579999999988764
No 91
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=1.8e-17 Score=180.20 Aligned_cols=206 Identities=20% Similarity=0.258 Sum_probs=153.3
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.|.+|++|||++++++.+...+. .+..+..+|||||+|||||++|+.+|+.+.+.
T Consensus 8 ~k~RP~~f~~iiGq~~v~~~L~~~i~-------~~~~~hayLf~Gp~G~GKtt~A~~lak~l~c~~~~~~~~c~~c~~c~ 80 (576)
T PRK14965 8 RKYRPQTFSDLTGQEHVSRTLQNAID-------TGRVAHAFLFTGARGVGKTSTARILAKALNCEQGLTAEPCNVCPPCV 80 (576)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHhhcCCCCCCCCCCCccHHHH
Confidence 36788999999999999998876653 23344568999999999999999999997642
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.+++.. ..+...++.+.+.+.. ..++.|+||||+|.|. ...+|.|+..+
T Consensus 81 ~i~~g~~~d~~eid~~s-----~~~v~~ir~l~~~~~~~p~~~~~KVvIIdev~~Lt------------~~a~naLLk~L 143 (576)
T PRK14965 81 EITEGRSVDVFEIDGAS-----NTGVDDIRELRENVKYLPSRSRYKIFIIDEVHMLS------------TNAFNALLKTL 143 (576)
T ss_pred HHhcCCCCCeeeeeccC-----ccCHHHHHHHHHHHHhccccCCceEEEEEChhhCC------------HHHHHHHHHHH
Confidence 22222211 1223445555555442 2345799999999862 34578888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+.+++||++|+.++.+.+.+++|+ ..+.|.+++.++....+...+...... +
T Consensus 144 Eepp~~~~fIl~t~~~~kl~~tI~SRc-~~~~f~~l~~~~i~~~L~~i~~~egi~------------------------i 198 (576)
T PRK14965 144 EEPPPHVKFIFATTEPHKVPITILSRC-QRFDFRRIPLQKIVDRLRYIADQEGIS------------------------I 198 (576)
T ss_pred HcCCCCeEEEEEeCChhhhhHHHHHhh-hhhhcCCCCHHHHHHHHHHHHHHhCCC------------------------C
Confidence 888899999999999999999999999 899999999999998888887764322 8
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 490 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~a 490 (512)
+++.+..++..+.| +.+++..++.. ...+.. ..||.+++...
T Consensus 199 ~~~al~~la~~a~G-~lr~al~~Ldq--liay~g--~~It~edV~~l 240 (576)
T PRK14965 199 SDAALALVARKGDG-SMRDSLSTLDQ--VLAFCG--DAVGDDDVAEL 240 (576)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHH--HHHhcc--CCCCHHHHHHH
Confidence 89999999999876 66666666643 333333 34777777655
No 92
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.3e-17 Score=179.57 Aligned_cols=212 Identities=22% Similarity=0.296 Sum_probs=154.7
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEE---eCC-----
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALM---TGG----- 302 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v---~~~----- 302 (512)
.++.|.+|++|+|++.+++.+...+. .+..+..+||+||+|||||++|+.+|..+.++-... .|+
T Consensus 10 ~KyRP~~f~dIiGQe~~v~~L~~aI~-------~~rl~HAYLF~GP~GtGKTt~AriLAk~LnC~~~~~~~~pC~~C~~~ 82 (725)
T PRK07133 10 RKYRPKTFDDIVGQDHIVQTLKNIIK-------SNKISHAYLFSGPRGTGKTSVAKIFANALNCSHKTDLLEPCQECIEN 82 (725)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCcHHHHHHHHHHHhcccccCCCCCchhHHHHh
Confidence 46788999999999999998876553 233445689999999999999999999886531100 000
Q ss_pred -----CCC---CCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEE
Q 010366 303 -----DVA---PLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIV 371 (512)
Q Consensus 303 -----~~~---~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~vi 371 (512)
++. ..+..+...++.+.+.+... .++.|++|||+|.|. ...++.|+..+++++..++
T Consensus 83 ~~~~~Dvieidaasn~~vd~IReLie~~~~~P~~g~~KV~IIDEa~~LT------------~~A~NALLKtLEEPP~~ti 150 (725)
T PRK07133 83 VNNSLDIIEMDAASNNGVDEIRELIENVKNLPTQSKYKIYIIDEVHMLS------------KSAFNALLKTLEEPPKHVI 150 (725)
T ss_pred hcCCCcEEEEeccccCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhCC------------HHHHHHHHHHhhcCCCceE
Confidence 000 00112244466666655532 346799999999872 2467888888888888999
Q ss_pred EEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHH
Q 010366 372 LALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEA 451 (512)
Q Consensus 372 iI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 451 (512)
+|++|+.++.+.+.+++|| ..+.|.+|+.++....+...+...... ++++++..+
T Consensus 151 fILaTte~~KLl~TI~SRc-q~ieF~~L~~eeI~~~L~~il~kegI~------------------------id~eAl~~L 205 (725)
T PRK07133 151 FILATTEVHKIPLTILSRV-QRFNFRRISEDEIVSRLEFILEKENIS------------------------YEKNALKLI 205 (725)
T ss_pred EEEEcCChhhhhHHHHhhc-eeEEccCCCHHHHHHHHHHHHHHcCCC------------------------CCHHHHHHH
Confidence 9999999999999999999 799999999999999998887664322 778889999
Q ss_pred HHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 452 AAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 452 a~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
|..+.| +.+++..++..+.+ ++. ..||.+++.+++
T Consensus 206 A~lS~G-slR~AlslLekl~~--y~~--~~It~e~V~ell 240 (725)
T PRK07133 206 AKLSSG-SLRDALSIAEQVSI--FGN--NKITLKNVEELF 240 (725)
T ss_pred HHHcCC-CHHHHHHHHHHHHH--hcc--CCCCHHHHHHHH
Confidence 998876 67777777754433 332 348888777643
No 93
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.77 E-value=2.9e-17 Score=174.54 Aligned_cols=207 Identities=22% Similarity=0.265 Sum_probs=150.4
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
..+.|..|++++|++.+...+...+. .+..+..+|||||+|+|||++|+.+|..+++.
T Consensus 8 ~kyRP~~f~diiGq~~i~~~L~~~i~-------~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~c~~~~~~~pc~~c~nc~ 80 (486)
T PRK14953 8 RKYRPKFFKEVIGQEIVVRILKNAVK-------LQRVSHAYIFAGPRGTGKTTIARILAKVLNCLNPQEGEPCGKCENCV 80 (486)
T ss_pred HhhCCCcHHHccChHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCcCCCCCCCCCccHHHH
Confidence 36788899999999999998866552 23333468899999999999999999987631
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.++++. ..+ ...++.+.+.+.. ...+.|++|||+|.+. ...++.|+..+
T Consensus 81 ~i~~g~~~d~~eidaas--~~g---vd~ir~I~~~~~~~P~~~~~KVvIIDEad~Lt------------~~a~naLLk~L 143 (486)
T PRK14953 81 EIDKGSFPDLIEIDAAS--NRG---IDDIRALRDAVSYTPIKGKYKVYIIDEAHMLT------------KEAFNALLKTL 143 (486)
T ss_pred HHhcCCCCcEEEEeCcc--CCC---HHHHHHHHHHHHhCcccCCeeEEEEEChhhcC------------HHHHHHHHHHH
Confidence 11121110 112 2334444444332 2346799999999862 33567778888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+..+++|++|+.++.+.+++.+|+ ..+.|++|+.+++..++...+..... .+
T Consensus 144 Eepp~~~v~Il~tt~~~kl~~tI~SRc-~~i~f~~ls~~el~~~L~~i~k~egi------------------------~i 198 (486)
T PRK14953 144 EEPPPRTIFILCTTEYDKIPPTILSRC-QRFIFSKPTKEQIKEYLKRICNEEKI------------------------EY 198 (486)
T ss_pred hcCCCCeEEEEEECCHHHHHHHHHHhc-eEEEcCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 877888888888888888999999999 68999999999999999988876432 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+++++..|+..+.| +.+++.+++..+. .++ ...+|.+++.+++
T Consensus 199 d~~al~~La~~s~G-~lr~al~~Ldkl~--~~~--~~~It~~~V~~~l 241 (486)
T PRK14953 199 EEKALDLLAQASEG-GMRDAASLLDQAS--TYG--EGKVTIKVVEEFL 241 (486)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH--Hhc--CCCcCHHHHHHHh
Confidence 88999999998876 6677777765443 333 3578888888754
No 94
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=99.77 E-value=2.4e-17 Score=184.01 Aligned_cols=207 Identities=20% Similarity=0.172 Sum_probs=149.9
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.+.+|++|||++.+++.|...+.. +.....+||+||+|||||++|+.||+.+.+.
T Consensus 7 ~KyRP~~f~eiiGqe~v~~~L~~~i~~-------~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~C~~~~~~~pCg~C~sC~ 79 (824)
T PRK07764 7 RRYRPATFAEVIGQEHVTEPLSTALDS-------GRINHAYLFSGPRGCGKTSSARILARSLNCVEGPTSTPCGECDSCV 79 (824)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHhCcccCCCCCCCcccHHHH
Confidence 368888999999999999998776532 2333458999999999999999999998642
Q ss_pred -----------eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHH
Q 010366 296 -----------YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 361 (512)
Q Consensus 296 -----------~~~v~~~~~~~~~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~ 361 (512)
++.+++... . ....++.+.+.+. ...++.|+||||+|.| ....+|.||.
T Consensus 80 ~~~~g~~~~~dv~eidaas~--~---~Vd~iR~l~~~~~~~p~~~~~KV~IIDEad~l------------t~~a~NaLLK 142 (824)
T PRK07764 80 ALAPGGPGSLDVTEIDAASH--G---GVDDARELRERAFFAPAESRYKIFIIDEAHMV------------TPQGFNALLK 142 (824)
T ss_pred HHHcCCCCCCcEEEeccccc--C---CHHHHHHHHHHHHhchhcCCceEEEEechhhc------------CHHHHHHHHH
Confidence 222222111 1 2233444333222 2345779999999997 2456788888
Q ss_pred HcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhc
Q 010366 362 RTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 441 (512)
Q Consensus 362 ~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
.+++...+++||++|+.++.|.+.|++|+ .++.|..++.++...+|...+.....
T Consensus 143 ~LEEpP~~~~fIl~tt~~~kLl~TIrSRc-~~v~F~~l~~~~l~~~L~~il~~EGv------------------------ 197 (824)
T PRK07764 143 IVEEPPEHLKFIFATTEPDKVIGTIRSRT-HHYPFRLVPPEVMRGYLERICAQEGV------------------------ 197 (824)
T ss_pred HHhCCCCCeEEEEEeCChhhhhHHHHhhe-eEEEeeCCCHHHHHHHHHHHHHHcCC------------------------
Confidence 88888899999999999999999999999 89999999999999999888766432
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 010366 442 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 490 (512)
Q Consensus 442 ~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~a 490 (512)
.++++.+..|+..+.| +.+++..++..+.+ +. +...||.+++...
T Consensus 198 ~id~eal~lLa~~sgG-dlR~Al~eLEKLia--~~-~~~~IT~e~V~al 242 (824)
T PRK07764 198 PVEPGVLPLVIRAGGG-SVRDSLSVLDQLLA--GA-GPEGVTYERAVAL 242 (824)
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHHHHHHh--hc-CCCCCCHHHHHHH
Confidence 1788889999988865 77777766654332 21 2345666655443
No 95
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=3.9e-17 Score=173.63 Aligned_cols=205 Identities=24% Similarity=0.273 Sum_probs=149.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 295 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------- 295 (512)
++.|.+|+++||++.+++.+...+. .+..+..+|||||+|+|||++|+++|+.+.++
T Consensus 7 KyRP~~fdeiiGqe~v~~~L~~~I~-------~grl~hayLf~Gp~G~GKTt~Ar~LAk~L~c~~~~~~~pC~~C~~C~~ 79 (535)
T PRK08451 7 KYRPKHFDELIGQESVSKTLSLALD-------NNRLAHAYLFSGLRGSGKTSSARIFARALVCEQGPSSTPCDTCIQCQS 79 (535)
T ss_pred HHCCCCHHHccCcHHHHHHHHHHHH-------cCCCCeeEEEECCCCCcHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 6788899999999999998877653 23344467999999999999999999987421
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 296 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 296 --------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
++.+++.. .. +...++.+....... .++.|++|||+|.+ ....++.|+..++
T Consensus 80 ~~~~~h~dv~eldaas--~~---gId~IRelie~~~~~P~~~~~KVvIIDEad~L------------t~~A~NALLK~LE 142 (535)
T PRK08451 80 ALENRHIDIIEMDAAS--NR---GIDDIRELIEQTKYKPSMARFKIFIIDEVHML------------TKEAFNALLKTLE 142 (535)
T ss_pred HhhcCCCeEEEecccc--cc---CHHHHHHHHHHHhhCcccCCeEEEEEECcccC------------CHHHHHHHHHHHh
Confidence 22222211 11 234455555443221 33569999999986 2346677888888
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 365 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+++..+.||++|+.+..+.+.+.+|+ ..++|.+++.++....+...+...+. .++
T Consensus 143 Epp~~t~FIL~ttd~~kL~~tI~SRc-~~~~F~~Ls~~ei~~~L~~Il~~EGi------------------------~i~ 197 (535)
T PRK08451 143 EPPSYVKFILATTDPLKLPATILSRT-QHFRFKQIPQNSIISHLKTILEKEGV------------------------SYE 197 (535)
T ss_pred hcCCceEEEEEECChhhCchHHHhhc-eeEEcCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 88888999999999999999999998 89999999999999998888776432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 010366 445 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 490 (512)
Q Consensus 445 ~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~a 490 (512)
++.+..|+..+.| +.|++..++..+.+ +.. ..||.+++...
T Consensus 198 ~~Al~~Ia~~s~G-dlR~alnlLdqai~--~~~--~~It~~~V~~~ 238 (535)
T PRK08451 198 PEALEILARSGNG-SLRDTLTLLDQAII--YCK--NAITESKVADM 238 (535)
T ss_pred HHHHHHHHHHcCC-cHHHHHHHHHHHHH--hcC--CCCCHHHHHHH
Confidence 8999999998866 77777777753332 322 35666666544
No 96
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=99.76 E-value=8e-17 Score=174.39 Aligned_cols=224 Identities=19% Similarity=0.191 Sum_probs=158.5
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCCC
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 303 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~~ 303 (512)
+...-+.|++.++-...|..++..... +..|...++|+||||||||.+++.+...+ ...++++||..
T Consensus 750 ~DYVPD~LPhREeEIeeLasfL~paIk---gsgpnnvLYIyG~PGTGKTATVK~VLrELqeeaeqk~lp~f~vVYINCm~ 826 (1164)
T PTZ00112 750 LDVVPKYLPCREKEIKEVHGFLESGIK---QSGSNQILYISGMPGTGKTATVYSVIQLLQHKTKQKLLPSFNVFEINGMN 826 (1164)
T ss_pred cccCCCcCCChHHHHHHHHHHHHHHHh---cCCCCceEEEECCCCCCHHHHHHHHHHHHHHHHhhccCCCceEEEEeCCc
Confidence 334447888999888888776654332 22233345799999999999999998765 14578999965
Q ss_pred CCC------------------CchhHHHHHHHHHHHHHh-cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 304 VAP------------------LGPQAVTKIHQLFDWAKK-SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 304 ~~~------------------~~~~~~~~l~~lf~~a~~-~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
+.. .+..+...+..+|..... .....||+|||||.|... .+.+|..|+....
T Consensus 827 Lstp~sIYqvI~qqL~g~~P~~GlsS~evLerLF~~L~k~~r~v~IIILDEID~L~kK---------~QDVLYnLFR~~~ 897 (1164)
T PTZ00112 827 VVHPNAAYQVLYKQLFNKKPPNALNSFKILDRLFNQNKKDNRNVSILIIDEIDYLITK---------TQKVLFTLFDWPT 897 (1164)
T ss_pred cCCHHHHHHHHHHHHcCCCCCccccHHHHHHHHHhhhhcccccceEEEeehHhhhCcc---------HHHHHHHHHHHhh
Confidence 432 122333455666665532 233569999999998532 2456666766554
Q ss_pred CCCCCEEEEEeeCC---CCCCCHHHHccccc-eeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhh
Q 010366 365 DQSKDIVLALATNR---PGDLDSAVADRIDE-VLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 440 (512)
Q Consensus 365 ~~~~~viiI~ttN~---~~~l~~al~~R~~~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
.....++||+++|. +..++|.+.+||.. .+.|++|+.+++.+||...+....
T Consensus 898 ~s~SKLiLIGISNdlDLperLdPRLRSRLg~eeIvF~PYTaEQL~dILk~RAe~A~------------------------ 953 (1164)
T PTZ00112 898 KINSKLVLIAISNTMDLPERLIPRCRSRLAFGRLVFSPYKGDEIEKIIKERLENCK------------------------ 953 (1164)
T ss_pred ccCCeEEEEEecCchhcchhhhhhhhhccccccccCCCCCHHHHHHHHHHHHHhCC------------------------
Confidence 45567889999886 56778899999864 489999999999999999987521
Q ss_pred cCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 441 KGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 441 ~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
..++++++..+|......+| |++.++..+..|........|+.+|+.+|+...
T Consensus 954 gVLdDdAIELIArkVAq~SG-DARKALDILRrAgEikegskVT~eHVrkAleei 1006 (1164)
T PTZ00112 954 EIIDHTAIQLCARKVANVSG-DIRKALQICRKAFENKRGQKIVPRDITEATNQL 1006 (1164)
T ss_pred CCCCHHHHHHHHHhhhhcCC-HHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHH
Confidence 12889999999987654443 677777666655544455689999999998655
No 97
>TIGR02902 spore_lonB ATP-dependent protease LonB. Members of this protein are LonB, a paralog of the ATP-dependent protease La (LonA, TIGR00763). LonB proteins are found strictly, and almost universally, in endospore-forming bacteria. This protease was shown, in Bacillus subtilis, to be expressed specifically in the forespore, during sporulation, under control of sigma(F). The lonB gene, despite location immediately upstream of lonA, was shown to be monocistronic. LonB appears able to act on sigma(H) for post-translation control, but lonB mutation did not produce an obvious sporulation defect under the conditions tested. Note that additional paralogs of LonA and LonB occur in the Clostridium lineage and this model selects only one per species as the protein that corresponds to LonB in B. subtilis.
Probab=99.76 E-value=3e-17 Score=176.94 Aligned_cols=220 Identities=20% Similarity=0.230 Sum_probs=151.4
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEe
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMT 300 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~ 300 (512)
.++.+.+|++++|++..++.+...+ . ...+.++||+||||||||++|+++++.+ +.+|+.++
T Consensus 57 ~~~rp~~f~~iiGqs~~i~~l~~al------~--~~~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~s~~~~~~~fi~id 128 (531)
T TIGR02902 57 EKTRPKSFDEIIGQEEGIKALKAAL------C--GPNPQHVIIYGPPGVGKTAAARLVLEEAKKNPASPFKEGAAFVEID 128 (531)
T ss_pred HhhCcCCHHHeeCcHHHHHHHHHHH------h--CCCCceEEEECCCCCCHHHHHHHHHHHhhhccCCCcCCCCCEEEEc
Confidence 4677889999999999988886432 1 1122479999999999999999997642 35789999
Q ss_pred CCCCC--C--C-----ch--hHHHHHHHHHHH---------HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHH
Q 010366 301 GGDVA--P--L-----GP--QAVTKIHQLFDW---------AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL 360 (512)
Q Consensus 301 ~~~~~--~--~-----~~--~~~~~l~~lf~~---------a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll 360 (512)
|.... . . +. .........|.. +.....+++|||||++.| +...+..|..++
T Consensus 129 ~~~~~~~~~~~~~~li~~~~~p~~~~~~~~g~~g~~~~~~G~l~~a~gG~L~IdEI~~L---------~~~~q~~LL~~L 199 (531)
T TIGR02902 129 ATTARFDERGIADPLIGSVHDPIYQGAGPLGIAGIPQPKPGAVTRAHGGVLFIDEIGEL---------HPVQMNKLLKVL 199 (531)
T ss_pred cccccCCccccchhhcCCcccchhccccccccCCcccccCchhhccCCcEEEEechhhC---------CHHHHHHHHHHH
Confidence 86321 1 0 00 000000000000 011223689999999997 445555555555
Q ss_pred HHcC-------------------------CCCCCEEEEE-eeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHH
Q 010366 361 FRTG-------------------------DQSKDIVLAL-ATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 414 (512)
Q Consensus 361 ~~~~-------------------------~~~~~viiI~-ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~ 414 (512)
+.-. ..+.++.+|+ |||.++.++|++++|| ..+.|++++.+++..|++..+.+
T Consensus 200 e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~rlI~ATt~~p~~L~paLrsR~-~~I~f~pL~~eei~~Il~~~a~k 278 (531)
T TIGR02902 200 EDRKVFLDSAYYNSENPNIPSHIHDIFQNGLPADFRLIGATTRNPEEIPPALRSRC-VEIFFRPLLDEEIKEIAKNAAEK 278 (531)
T ss_pred HhCeeeeccccccccCcccccchhhhcccCcccceEEEEEecCCcccCChHHhhhh-heeeCCCCCHHHHHHHHHHHHHH
Confidence 4310 0123455555 5677999999999999 78899999999999999998876
Q ss_pred HhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 415 YIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
... .++++.++.|+.++. ++|++.+++..+...+...+...||.+|+..++..-
T Consensus 279 ~~i------------------------~is~~al~~I~~y~~--n~Rel~nll~~Aa~~A~~~~~~~It~~dI~~vl~~~ 332 (531)
T TIGR02902 279 IGI------------------------NLEKHALELIVKYAS--NGREAVNIVQLAAGIALGEGRKRILAEDIEWVAENG 332 (531)
T ss_pred cCC------------------------CcCHHHHHHHHHhhh--hHHHHHHHHHHHHHHHhhCCCcEEcHHHHHHHhCCc
Confidence 432 288999998887764 789999999766555555555789999999998643
No 98
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=99.76 E-value=4.9e-17 Score=176.17 Aligned_cols=213 Identities=21% Similarity=0.220 Sum_probs=158.8
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEe-------CC-
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT-------GG- 302 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~-------~~- 302 (512)
.++.+.+|++|||++.+++.|.+.+. .+..+.++||+||+|||||++|+.+|+.+.+.....+ |+
T Consensus 16 ~KyRP~~f~dliGq~~~v~~L~~~~~-------~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~c~~~~~~~~~~~~~cg~ 88 (598)
T PRK09111 16 RKYRPQTFDDLIGQEAMVRTLTNAFE-------TGRIAQAFMLTGVRGVGKTTTARILARALNYEGPDGDGGPTIDLCGV 88 (598)
T ss_pred hhhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHhhCcCCccccCCCccccCcc
Confidence 36788899999999999999877553 3444567999999999999999999999865422111 11
Q ss_pred -------------CCCC---CchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 303 -------------DVAP---LGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 303 -------------~~~~---~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.. ........++.+++.+.. ..++.||||||+|.+. ...++.|+..+
T Consensus 89 c~~C~~i~~g~h~Dv~e~~a~s~~gvd~IReIie~~~~~P~~a~~KVvIIDEad~Ls------------~~a~naLLKtL 156 (598)
T PRK09111 89 GEHCQAIMEGRHVDVLEMDAASHTGVDDIREIIESVRYRPVSARYKVYIIDEVHMLS------------TAAFNALLKTL 156 (598)
T ss_pred cHHHHHHhcCCCCceEEecccccCCHHHHHHHHHHHHhchhcCCcEEEEEEChHhCC------------HHHHHHHHHHH
Confidence 1100 011224456666665543 2346799999999972 34578888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+..++||++|+.++.+.+.+.+|| ..+.|..|+.++....+...+..... .+
T Consensus 157 EePp~~~~fIl~tte~~kll~tI~SRc-q~~~f~~l~~~el~~~L~~i~~kegi------------------------~i 211 (598)
T PRK09111 157 EEPPPHVKFIFATTEIRKVPVTVLSRC-QRFDLRRIEADVLAAHLSRIAAKEGV------------------------EV 211 (598)
T ss_pred HhCCCCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888889999999998888999999999 88999999999999999988876432 28
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+++.+..|+..+.| +.+++..++..+. .++. ..||.++++..+.
T Consensus 212 ~~eAl~lIa~~a~G-dlr~al~~Ldkli--~~g~--g~It~e~V~~llg 255 (598)
T PRK09111 212 EDEALALIARAAEG-SVRDGLSLLDQAI--AHGA--GEVTAEAVRDMLG 255 (598)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH--hhcC--CCcCHHHHHHHhC
Confidence 88999999999866 7777777775332 3332 5699999988764
No 99
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=99.76 E-value=3.8e-17 Score=167.24 Aligned_cols=210 Identities=21% Similarity=0.269 Sum_probs=144.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC-----CCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v~~~~~~~ 306 (512)
++.|.+|++++|++.++..+..++. .+.. .+++|+||||||||++|+++++.+. .+++++++.++..
T Consensus 8 ky~P~~~~~~~g~~~~~~~L~~~~~------~~~~--~~lll~Gp~GtGKT~la~~~~~~l~~~~~~~~~~~i~~~~~~~ 79 (337)
T PRK12402 8 KYRPALLEDILGQDEVVERLSRAVD------SPNL--PHLLVQGPPGSGKTAAVRALARELYGDPWENNFTEFNVADFFD 79 (337)
T ss_pred hhCCCcHHHhcCCHHHHHHHHHHHh------CCCC--ceEEEECCCCCCHHHHHHHHHHHhcCcccccceEEechhhhhh
Confidence 5778889999999999998877653 1122 3699999999999999999999874 3467888766421
Q ss_pred Cc---------------h------hHHHHHHHHHHHHHhc----CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHH
Q 010366 307 LG---------------P------QAVTKIHQLFDWAKKS----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 361 (512)
Q Consensus 307 ~~---------------~------~~~~~l~~lf~~a~~~----~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~ 361 (512)
.. . .....++.+....... ..+.+|||||++.+ .......|..++.
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vlilDe~~~l---------~~~~~~~L~~~le 150 (337)
T PRK12402 80 QGKKYLVEDPRFAHFLGTDKRIRSSKIDNFKHVLKEYASYRPLSADYKTILLDNAEAL---------REDAQQALRRIME 150 (337)
T ss_pred cchhhhhcCcchhhhhhhhhhhccchHHHHHHHHHHHHhcCCCCCCCcEEEEeCcccC---------CHHHHHHHHHHHH
Confidence 10 0 0112233333232221 23569999999987 2233334444443
Q ss_pred HcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhc
Q 010366 362 RTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 441 (512)
Q Consensus 362 ~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
.....+.||++++.+..+.+.+.+|+ ..+.|++|+.+++..++...+.....
T Consensus 151 ---~~~~~~~~Il~~~~~~~~~~~L~sr~-~~v~~~~~~~~~~~~~l~~~~~~~~~------------------------ 202 (337)
T PRK12402 151 ---QYSRTCRFIIATRQPSKLIPPIRSRC-LPLFFRAPTDDELVDVLESIAEAEGV------------------------ 202 (337)
T ss_pred ---hccCCCeEEEEeCChhhCchhhcCCc-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------
Confidence 33455677778877778888999998 78999999999999999988765432
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 442 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 442 ~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
.++++.+..++..+.| + +..++..++.++... ..||.+++.+++.
T Consensus 203 ~~~~~al~~l~~~~~g-d---lr~l~~~l~~~~~~~--~~It~~~v~~~~~ 247 (337)
T PRK12402 203 DYDDDGLELIAYYAGG-D---LRKAILTLQTAALAA--GEITMEAAYEALG 247 (337)
T ss_pred CCCHHHHHHHHHHcCC-C---HHHHHHHHHHHHHcC--CCCCHHHHHHHhC
Confidence 2889999999998844 4 455555555554333 4789988887765
No 100
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.76 E-value=4.4e-17 Score=170.18 Aligned_cols=215 Identities=20% Similarity=0.229 Sum_probs=152.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEE----------EeC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYAL----------MTG 301 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~----------v~~ 301 (512)
++.|..|++|+|++.+++.+...+. .+..+.++||+||||||||++|+++|+.+.+.-.. -.|
T Consensus 9 k~RP~~~~eiiGq~~~~~~L~~~~~-------~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c~~~~~~~~~~~~~~~~c 81 (397)
T PRK14955 9 KYRPKKFADITAQEHITRTIQNSLR-------MGRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDADYLQEVTEPC 81 (397)
T ss_pred hcCCCcHhhccChHHHHHHHHHHHH-------hCCcceeEEEECCCCCCHHHHHHHHHHHhcCCCCcCcccccccCCCCC
Confidence 5778889999999999998866553 23344569999999999999999999998653100 011
Q ss_pred CC--------------CCCC---chhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHH
Q 010366 302 GD--------------VAPL---GPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF 361 (512)
Q Consensus 302 ~~--------------~~~~---~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~ 361 (512)
+. +... .......++.+.+.+. ...++.|+||||+|.+. ....+.++.
T Consensus 82 ~~c~~c~~~~~~~~~n~~~~~~~~~~~id~Ir~l~~~~~~~p~~~~~kvvIIdea~~l~------------~~~~~~LLk 149 (397)
T PRK14955 82 GECESCRDFDAGTSLNISEFDAASNNSVDDIRLLRENVRYGPQKGRYRVYIIDEVHMLS------------IAAFNAFLK 149 (397)
T ss_pred CCCHHHHHHhcCCCCCeEeecccccCCHHHHHHHHHHHhhchhcCCeEEEEEeChhhCC------------HHHHHHHHH
Confidence 10 0000 1112345555554442 22345699999999972 234566777
Q ss_pred HcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhc
Q 010366 362 RTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 441 (512)
Q Consensus 362 ~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
.+++.+..++||++|+.+..+.+.+.+|+ ..+.|++++.++....+...+.....
T Consensus 150 ~LEep~~~t~~Il~t~~~~kl~~tl~sR~-~~v~f~~l~~~ei~~~l~~~~~~~g~------------------------ 204 (397)
T PRK14955 150 TLEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLEEIQQQLQGICEAEGI------------------------ 204 (397)
T ss_pred HHhcCCCCeEEEEEeCChHHhHHHHHHHH-HHhhcCCCCHHHHHHHHHHHHHHcCC------------------------
Confidence 77777778888888888888989999999 78999999999999988888765322
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC-CCCCccCHHHHHHHH
Q 010366 442 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG-SENCVLDPSLFREVV 491 (512)
Q Consensus 442 ~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~-~~~~~it~e~~~~al 491 (512)
.++++.++.|+..+.| +.+.+...+..+...+.. .....||.+++.+++
T Consensus 205 ~i~~~al~~l~~~s~g-~lr~a~~~L~kl~~~~~~~~~~~~It~~~v~~~v 254 (397)
T PRK14955 205 SVDADALQLIGRKAQG-SMRDAQSILDQVIAFSVESEGEGSIRYDKVAELL 254 (397)
T ss_pred CCCHHHHHHHHHHcCC-CHHHHHHHHHHHHHhccccCCCCccCHHHHHHHH
Confidence 2899999999999866 677777777655444321 233688988887765
No 101
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=99.75 E-value=1.8e-17 Score=174.18 Aligned_cols=212 Identities=25% Similarity=0.322 Sum_probs=162.0
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe--E-----------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY--A----------- 297 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~--~----------- 297 (512)
+++.|..|++++|++.+...|...+..- .-..++||+||.|||||++||.+|+.+++.- .
T Consensus 8 rKyRP~~F~evvGQe~v~~~L~nal~~~-------ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~~~~ePC~~C~~Ck 80 (515)
T COG2812 8 RKYRPKTFDDVVGQEHVVKTLSNALENG-------RIAHAYLFSGPRGVGKTTIARILAKALNCENGPTAEPCGKCISCK 80 (515)
T ss_pred HHhCcccHHHhcccHHHHHHHHHHHHhC-------cchhhhhhcCCCCcCchhHHHHHHHHhcCCCCCCCCcchhhhhhH
Confidence 4688899999999999999998766433 3334699999999999999999999987541 1
Q ss_pred EEeC---CCCCCCc---hhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCC
Q 010366 298 LMTG---GDVAPLG---PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSK 368 (512)
Q Consensus 298 ~v~~---~~~~~~~---~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 368 (512)
.++. .++.... ..+...++.+.+.+.- ..++-|++|||++.| ....+|.||..+++++.
T Consensus 81 ~I~~g~~~DviEiDaASn~gVddiR~i~e~v~y~P~~~ryKVyiIDEvHML------------S~~afNALLKTLEEPP~ 148 (515)
T COG2812 81 EINEGSLIDVIEIDAASNTGVDDIREIIEKVNYAPSEGRYKVYIIDEVHML------------SKQAFNALLKTLEEPPS 148 (515)
T ss_pred hhhcCCcccchhhhhhhccChHHHHHHHHHhccCCccccceEEEEecHHhh------------hHHHHHHHhcccccCcc
Confidence 1111 1111111 1234455666665542 334679999999996 46789999999999999
Q ss_pred CEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHH
Q 010366 369 DIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDIL 448 (512)
Q Consensus 369 ~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (512)
+|+||++|..+..+++.++||| ..+.|...+.++....+...+.+..+. ++++.+
T Consensus 149 hV~FIlATTe~~Kip~TIlSRc-q~f~fkri~~~~I~~~L~~i~~~E~I~------------------------~e~~aL 203 (515)
T COG2812 149 HVKFILATTEPQKIPNTILSRC-QRFDFKRLDLEEIAKHLAAILDKEGIN------------------------IEEDAL 203 (515)
T ss_pred CeEEEEecCCcCcCchhhhhcc-ccccccCCCHHHHHHHHHHHHHhcCCc------------------------cCHHHH
Confidence 9999999999999999999999 999999999999999999888765432 889999
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 449 MEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 449 ~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
..+|...+| |.||...++. ++...+. ..||.+.++..+
T Consensus 204 ~~ia~~a~G-s~RDalslLD--q~i~~~~--~~It~~~v~~~l 241 (515)
T COG2812 204 SLIARAAEG-SLRDALSLLD--QAIAFGE--GEITLESVRDML 241 (515)
T ss_pred HHHHHHcCC-ChhhHHHHHH--HHHHccC--CcccHHHHHHHh
Confidence 999999988 8888888885 3344433 456666655444
No 102
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=9.6e-17 Score=169.55 Aligned_cols=209 Identities=20% Similarity=0.246 Sum_probs=147.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 295 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------- 295 (512)
++.|.+|++|||++.++..+...+. .+..+.++|||||||+|||++|+.+|+.+.+.
T Consensus 10 kyRP~~~~diiGq~~~v~~L~~~i~-------~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~c~~c~~C~ 82 (451)
T PRK06305 10 KYRPQTFSEILGQDAVVAVLKNALR-------FNRAAHAYLFSGIRGTGKTTLARIFAKALNCQNPTEDQEPCNQCASCK 82 (451)
T ss_pred HhCCCCHHHhcCcHHHHHHHHHHHH-------cCCCceEEEEEcCCCCCHHHHHHHHHHHhcCCCcccCCCCCcccHHHH
Confidence 5677889999999999998876553 23344579999999999999999999987542
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCC
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 366 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 366 (512)
++.+++.. ..+.+....+............+.||||||+|.+. ....+.|+..+++.
T Consensus 83 ~i~~~~~~d~~~i~g~~--~~gid~ir~i~~~l~~~~~~~~~kvvIIdead~lt------------~~~~n~LLk~lEep 148 (451)
T PRK06305 83 EISSGTSLDVLEIDGAS--HRGIEDIRQINETVLFTPSKSRYKIYIIDEVHMLT------------KEAFNSLLKTLEEP 148 (451)
T ss_pred HHhcCCCCceEEeeccc--cCCHHHHHHHHHHHHhhhhcCCCEEEEEecHHhhC------------HHHHHHHHHHhhcC
Confidence 22232211 11222222222222222122456799999999872 23467788888887
Q ss_pred CCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHH
Q 010366 367 SKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDD 446 (512)
Q Consensus 367 ~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
+..+++|++||.+..+.+.+.+|+ ..+.|++++.++....+...+..... .++++
T Consensus 149 ~~~~~~Il~t~~~~kl~~tI~sRc-~~v~f~~l~~~el~~~L~~~~~~eg~------------------------~i~~~ 203 (451)
T PRK06305 149 PQHVKFFLATTEIHKIPGTILSRC-QKMHLKRIPEETIIDKLALIAKQEGI------------------------ETSRE 203 (451)
T ss_pred CCCceEEEEeCChHhcchHHHHhc-eEEeCCCCCHHHHHHHHHHHHHHcCC------------------------CCCHH
Confidence 888999999999999999999999 78999999999999988887765322 27889
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 447 ILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 447 ~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
.+..|+..+.| +.+.+..++..+.. +.. ..||.+++..++
T Consensus 204 al~~L~~~s~g-dlr~a~~~Lekl~~--~~~--~~It~~~V~~l~ 243 (451)
T PRK06305 204 ALLPIARAAQG-SLRDAESLYDYVVG--LFP--KSLDPDSVAKAL 243 (451)
T ss_pred HHHHHHHHcCC-CHHHHHHHHHHHHH--hcc--CCcCHHHHHHHH
Confidence 99999999865 56666665543322 222 347777766544
No 103
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.75 E-value=1e-16 Score=166.12 Aligned_cols=213 Identities=21% Similarity=0.251 Sum_probs=149.4
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCC-------C
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGG-------D 303 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~-------~ 303 (512)
.++.|.+|++++|++.+.+.+...+. .+..+.++|||||||+|||++|+++|+.+..+.....+. +
T Consensus 9 ~k~rP~~~~~iig~~~~~~~l~~~i~-------~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~~~~~~~~~ 81 (367)
T PRK14970 9 RKYRPQTFDDVVGQSHITNTLLNAIE-------NNHLAQALLFCGPRGVGKTTCARILARKINQPGYDDPNEDFSFNIFE 81 (367)
T ss_pred HHHCCCcHHhcCCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCcceEE
Confidence 36788889999999999888866552 234446899999999999999999999876422111100 0
Q ss_pred CCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC
Q 010366 304 VAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 380 (512)
Q Consensus 304 ~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~ 380 (512)
+..........+..+++.+... .++.||+|||+|.+. ...++.++..+++.+..+++|++++.+.
T Consensus 82 l~~~~~~~~~~i~~l~~~~~~~p~~~~~kiviIDE~~~l~------------~~~~~~ll~~le~~~~~~~~Il~~~~~~ 149 (367)
T PRK14970 82 LDAASNNSVDDIRNLIDQVRIPPQTGKYKIYIIDEVHMLS------------SAAFNAFLKTLEEPPAHAIFILATTEKH 149 (367)
T ss_pred eccccCCCHHHHHHHHHHHhhccccCCcEEEEEeChhhcC------------HHHHHHHHHHHhCCCCceEEEEEeCCcc
Confidence 0011112234556666655432 235699999999862 1245667776766677788888888889
Q ss_pred CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH
Q 010366 381 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 460 (512)
Q Consensus 381 ~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~ 460 (512)
.+.+++.+|+ ..+.|++|+.++...++...+...... ++++.++.++..+.| +.
T Consensus 150 kl~~~l~sr~-~~v~~~~~~~~~l~~~l~~~~~~~g~~------------------------i~~~al~~l~~~~~g-dl 203 (367)
T PRK14970 150 KIIPTILSRC-QIFDFKRITIKDIKEHLAGIAVKEGIK------------------------FEDDALHIIAQKADG-AL 203 (367)
T ss_pred cCCHHHHhcc-eeEecCCccHHHHHHHHHHHHHHcCCC------------------------CCHHHHHHHHHhCCC-CH
Confidence 9999999999 789999999999999998887664322 789999999998755 66
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+.+...+..+.... .. . ||.++++.++.
T Consensus 204 r~~~~~lekl~~y~--~~-~-it~~~v~~~~~ 231 (367)
T PRK14970 204 RDALSIFDRVVTFC--GK-N-ITRQAVTENLN 231 (367)
T ss_pred HHHHHHHHHHHHhc--CC-C-CCHHHHHHHhC
Confidence 66666665443322 22 2 78877776654
No 104
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=99.75 E-value=6.4e-17 Score=166.85 Aligned_cols=207 Identities=25% Similarity=0.326 Sum_probs=151.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 295 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------- 295 (512)
++.+..|++++|++.+++.+...+. .+..+..+|||||||+|||++|+++|+.+.++
T Consensus 7 ~~rp~~~~~iig~~~~~~~l~~~~~-------~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~ 79 (355)
T TIGR02397 7 KYRPQTFEDVIGQEHIVQTLKNAIK-------NGRIAHAYLFSGPRGTGKTSIARIFAKALNCQNGPDGEPCNECESCKE 79 (355)
T ss_pred HhCCCcHhhccCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCCCHHHHH
Confidence 5677889999999999998876552 23344579999999999999999999987532
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 296 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 296 --------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
++.+++.. ......++.+++.+... .++.||+|||+|.+. ...++.++..++
T Consensus 80 ~~~~~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~p~~~~~~vviidea~~l~------------~~~~~~Ll~~le 142 (355)
T TIGR02397 80 INSGSSLDVIEIDAAS-----NNGVDDIREILDNVKYAPSSGKYKVYIIDEVHMLS------------KSAFNALLKTLE 142 (355)
T ss_pred HhcCCCCCEEEeeccc-----cCCHHHHHHHHHHHhcCcccCCceEEEEeChhhcC------------HHHHHHHHHHHh
Confidence 22232221 12233455666655432 234699999999862 234667777777
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 365 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+.+.++++|++|+.++.+.+.+.+|+ ..+.|++|+.++...++..++..... .++
T Consensus 143 ~~~~~~~lIl~~~~~~~l~~~l~sr~-~~~~~~~~~~~~l~~~l~~~~~~~g~------------------------~i~ 197 (355)
T TIGR02397 143 EPPEHVVFILATTEPHKIPATILSRC-QRFDFKRIPLEDIVERLKKILDKEGI------------------------KIE 197 (355)
T ss_pred CCccceeEEEEeCCHHHHHHHHHhhe-eEEEcCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 77788889999998888889999999 78999999999999999998876432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 445 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 445 ~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
++.+..++..+.| +++.+...+..+.. +.. ..||.+++++++.
T Consensus 198 ~~a~~~l~~~~~g-~~~~a~~~lekl~~--~~~--~~it~~~v~~~~~ 240 (355)
T TIGR02397 198 DEALELIARAADG-SLRDALSLLDQLIS--FGN--GNITYEDVNELLG 240 (355)
T ss_pred HHHHHHHHHHcCC-ChHHHHHHHHHHHh--hcC--CCCCHHHHHHHhC
Confidence 8999999998865 66666666643333 222 4588888877653
No 105
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=99.75 E-value=3.1e-16 Score=162.45 Aligned_cols=223 Identities=16% Similarity=0.176 Sum_probs=149.1
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---------CCeEEEeCCCCCCC
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------LDYALMTGGDVAPL 307 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---------~~~~~v~~~~~~~~ 307 (512)
..++++|.++..+.+..++..... +..+.+++|+||||||||++++++++.+. .++++++|......
T Consensus 13 ~p~~l~gRe~e~~~l~~~l~~~~~----~~~~~~i~I~G~~GtGKT~l~~~~~~~l~~~~~~~~~~~~~v~in~~~~~~~ 88 (365)
T TIGR02928 13 VPDRIVHRDEQIEELAKALRPILR----GSRPSNVFIYGKTGTGKTAVTKYVMKELEEAAEDRDVRVVTVYVNCQILDTL 88 (365)
T ss_pred CCCCCCCcHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhccCCceEEEEEECCCCCCH
Confidence 347899999988888776654322 22335799999999999999999988753 46888888664321
Q ss_pred c---------------------hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH--cC
Q 010366 308 G---------------------PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR--TG 364 (512)
Q Consensus 308 ~---------------------~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~--~~ 364 (512)
. ....+.+..++.......++.||+|||+|.+... ....+..++.. ..
T Consensus 89 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlvIDE~d~L~~~---------~~~~L~~l~~~~~~~ 159 (365)
T TIGR02928 89 YQVLVELANQLRGSGEEVPTTGLSTSEVFRRLYKELNERGDSLIIVLDEIDYLVGD---------DDDLLYQLSRARSNG 159 (365)
T ss_pred HHHHHHHHHHHhhcCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEECchhhhccC---------CcHHHHhHhcccccc
Confidence 0 0112223444444444455789999999998621 11245555543 12
Q ss_pred C-CCCCEEEEEeeCCCC---CCCHHHHcccc-ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhh
Q 010366 365 D-QSKDIVLALATNRPG---DLDSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE 439 (512)
Q Consensus 365 ~-~~~~viiI~ttN~~~---~l~~al~~R~~-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 439 (512)
. ...++.+|+++|.++ .+++.+.+||. ..+.|++|+.+++..|++..+......
T Consensus 160 ~~~~~~v~lI~i~n~~~~~~~l~~~~~s~~~~~~i~f~p~~~~e~~~il~~r~~~~~~~--------------------- 218 (365)
T TIGR02928 160 DLDNAKVGVIGISNDLKFRENLDPRVKSSLCEEEIIFPPYDAEELRDILENRAEKAFYD--------------------- 218 (365)
T ss_pred CCCCCeEEEEEEECCcchHhhcCHHHhccCCcceeeeCCCCHHHHHHHHHHHHHhhccC---------------------
Confidence 2 236788999998875 58889999985 679999999999999999988632110
Q ss_pred hcCCCHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 440 IKGLTDDILMEAAAKT---EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 440 ~~~~~~~~l~~la~~t---~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
..++++.++.++..+ .| .+|.+..+|..+...+...+...||.+++..|++...
T Consensus 219 -~~~~~~~l~~i~~~~~~~~G-d~R~al~~l~~a~~~a~~~~~~~it~~~v~~a~~~~~ 275 (365)
T TIGR02928 219 -GVLDDGVIPLCAALAAQEHG-DARKAIDLLRVAGEIAEREGAERVTEDHVEKAQEKIE 275 (365)
T ss_pred -CCCChhHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHH
Confidence 126677666655543 45 4555555664443334444457899999999987763
No 106
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=99.75 E-value=9.8e-17 Score=173.07 Aligned_cols=207 Identities=23% Similarity=0.268 Sum_probs=152.6
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.|..|+++||++.++..+...+. .+..+..+|||||||+|||++|+++|+.+.+.
T Consensus 8 ~kyRP~~f~diiGqe~iv~~L~~~i~-------~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~c~~~~~~~pC~~C~~C~ 80 (563)
T PRK06647 8 TKRRPRDFNSLEGQDFVVETLKHSIE-------SNKIANAYIFSGPRGVGKTSSARAFARCLNCVNGPTPMPCGECSSCK 80 (563)
T ss_pred HHhCCCCHHHccCcHHHHHHHHHHHH-------cCCCCeEEEEECCCCCCHHHHHHHHHHhhccccCCCCCCCccchHHH
Confidence 36788899999999999998876653 23344569999999999999999999998642
Q ss_pred ---------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 296 ---------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 296 ---------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
++.+++.. ......++.+.+.+.. ..++.|++|||++.+ ....++.|+..+
T Consensus 81 ~i~~~~~~dv~~idgas-----~~~vddIr~l~e~~~~~p~~~~~KVvIIDEa~~L------------s~~a~naLLK~L 143 (563)
T PRK06647 81 SIDNDNSLDVIEIDGAS-----NTSVQDVRQIKEEIMFPPASSRYRVYIIDEVHML------------SNSAFNALLKTI 143 (563)
T ss_pred HHHcCCCCCeEEecCcc-----cCCHHHHHHHHHHHHhchhcCCCEEEEEEChhhc------------CHHHHHHHHHhh
Confidence 12222111 1223444455433332 234679999999986 234677888888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++.+..++||++|+.+..+.+++.+|+ ..+.|.+|+.++....+...+..... .+
T Consensus 144 Eepp~~~vfI~~tte~~kL~~tI~SRc-~~~~f~~l~~~el~~~L~~i~~~egi------------------------~i 198 (563)
T PRK06647 144 EEPPPYIVFIFATTEVHKLPATIKSRC-QHFNFRLLSLEKIYNMLKKVCLEDQI------------------------KY 198 (563)
T ss_pred ccCCCCEEEEEecCChHHhHHHHHHhc-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 888889999999988899999999999 78999999999999988887765322 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+++.+..|+..+.| +.+++..++..+. .+.. ..+|.+++..++
T Consensus 199 d~eAl~lLa~~s~G-dlR~alslLdkli--s~~~--~~It~e~V~~ll 241 (563)
T PRK06647 199 EDEALKWIAYKSTG-SVRDAYTLFDQVV--SFSD--SDITLEQIRSKM 241 (563)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHH--hhcC--CCCCHHHHHHHh
Confidence 89999999998866 7777777775332 3332 458887777654
No 107
>PRK08084 DNA replication initiation factor; Provisional
Probab=99.74 E-value=1.1e-16 Score=155.54 Aligned_cols=211 Identities=14% Similarity=0.143 Sum_probs=134.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---CCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~~~~~~~~~ 308 (512)
..+..+|++++.. .....+..+...... ....+++|||||||||||+++++++.+. ..+.+++.......
T Consensus 15 ~~~~~~fd~f~~~-~n~~a~~~l~~~~~~-----~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~~~~~~~~~- 87 (235)
T PRK08084 15 LPDDETFASFYPG-DNDSLLAALQNALRQ-----EHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYVPLDKRAWF- 87 (235)
T ss_pred CCCcCCccccccC-ccHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEEHHHHhhh-
Confidence 3556679999843 223333333222211 1224799999999999999999998753 44555555332211
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee-CCCCC---CCH
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-NRPGD---LDS 384 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt-N~~~~---l~~ 384 (512)
...+.+... ...+|+|||++.+..+ ......+..++....+ .+++.+|+|+ +.|.. +.|
T Consensus 88 ------~~~~~~~~~---~~dlliiDdi~~~~~~-------~~~~~~lf~l~n~~~e-~g~~~li~ts~~~p~~l~~~~~ 150 (235)
T PRK08084 88 ------VPEVLEGME---QLSLVCIDNIECIAGD-------ELWEMAIFDLYNRILE-SGRTRLLITGDRPPRQLNLGLP 150 (235)
T ss_pred ------hHHHHHHhh---hCCEEEEeChhhhcCC-------HHHHHHHHHHHHHHHH-cCCCeEEEeCCCChHHcCcccH
Confidence 111222222 2468999999987432 1223334444443322 2333344444 55544 679
Q ss_pred HHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
.+.||+. .++.+++|+.+++.++++..+..... .+++++++.|+.+..| +.+.
T Consensus 151 ~L~SRl~~g~~~~l~~~~~~~~~~~l~~~a~~~~~------------------------~l~~~v~~~L~~~~~~-d~r~ 205 (235)
T PRK08084 151 DLASRLDWGQIYKLQPLSDEEKLQALQLRARLRGF------------------------ELPEDVGRFLLKRLDR-EMRT 205 (235)
T ss_pred HHHHHHhCCceeeecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhhcC-CHHH
Confidence 9999995 78999999999999999886654321 2899999999999977 7888
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 463 I~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+..++..+..++... +..||.+.+.+++.
T Consensus 206 l~~~l~~l~~~~l~~-~~~it~~~~k~~l~ 234 (235)
T PRK08084 206 LFMTLDQLDRASITA-QRKLTIPFVKEILK 234 (235)
T ss_pred HHHHHHHHHHHHHhc-CCCCCHHHHHHHHc
Confidence 888887765444332 25699999988763
No 108
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=99.74 E-value=3.1e-17 Score=174.32 Aligned_cols=224 Identities=14% Similarity=0.172 Sum_probs=148.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~ 306 (512)
..+..+|++++..+.....+..+.....+ ++.+.++++||||||||||+|++++++++ +..++++++.++..
T Consensus 115 l~~~~tfd~fv~g~~n~~a~~~~~~~~~~---~~~~~~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi~~~~~~~ 191 (450)
T PRK00149 115 LNPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYVTSEKFTN 191 (450)
T ss_pred CCCCCcccccccCCCcHHHHHHHHHHHhC---cCccCCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 45777899987666555555444333332 23344569999999999999999999987 45678888766532
Q ss_pred CchhHHH--HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC---
Q 010366 307 LGPQAVT--KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD--- 381 (512)
Q Consensus 307 ~~~~~~~--~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~--- 381 (512)
....... ....+.. ....+.+|+|||++.+.++. .....+..+++.+.+.. ..+||++...|..
T Consensus 192 ~~~~~~~~~~~~~~~~---~~~~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~l~~~~-~~iiits~~~p~~l~~ 260 (450)
T PRK00149 192 DFVNALRNNTMEEFKE---KYRSVDVLLIDDIQFLAGKE-------RTQEEFFHTFNALHEAG-KQIVLTSDRPPKELPG 260 (450)
T ss_pred HHHHHHHcCcHHHHHH---HHhcCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCC-CcEEEECCCCHHHHHH
Confidence 1111100 1111211 12236799999999974332 12233334443332222 2334444344443
Q ss_pred CCHHHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+++.+.+||. .++.|++|+.++|..|++..+..... .++++.++.||..+.| +
T Consensus 261 l~~~l~SRl~~gl~v~i~~pd~~~r~~il~~~~~~~~~------------------------~l~~e~l~~ia~~~~~-~ 315 (450)
T PRK00149 261 LEERLRSRFEWGLTVDIEPPDLETRIAILKKKAEEEGI------------------------DLPDEVLEFIAKNITS-N 315 (450)
T ss_pred HHHHHHhHhcCCeeEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHcCcCC-C
Confidence 7789999995 58999999999999999999876321 2899999999999876 8
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
.|++..++..+.+.+...+ ..||.+.+.+++....
T Consensus 316 ~R~l~~~l~~l~~~~~~~~-~~it~~~~~~~l~~~~ 350 (450)
T PRK00149 316 VRELEGALNRLIAYASLTG-KPITLELAKEALKDLL 350 (450)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhh
Confidence 8999998877766554333 5689999999998764
No 109
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.73 E-value=2.5e-16 Score=170.91 Aligned_cols=216 Identities=21% Similarity=0.255 Sum_probs=153.6
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEE----------Ee
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYAL----------MT 300 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~----------v~ 300 (512)
.++.+.+|++|||++.++..|...+. .+.-+.++||+||+|||||++|+.+|+.+.+.--. -.
T Consensus 8 ~kyRP~~f~eivGQe~i~~~L~~~i~-------~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c~~~~~~~~~~~~~~~~ 80 (620)
T PRK14954 8 RKYRPSKFADITAQEHITHTIQNSLR-------MDRVGHGYIFSGLRGVGKTTAARVFAKAVNCQRMIDDPVYLQEVTEP 80 (620)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCcCCccccccccCCC
Confidence 36788899999999999998866542 23333469999999999999999999998762100 01
Q ss_pred CC--------------CCCCC---chhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHH
Q 010366 301 GG--------------DVAPL---GPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALL 360 (512)
Q Consensus 301 ~~--------------~~~~~---~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll 360 (512)
|+ ++... .......++.+.+.+. ...++-|++|||+|.+. ....+.|+
T Consensus 81 Cg~C~sC~~~~~g~~~n~~~~d~~s~~~vd~Ir~l~e~~~~~P~~~~~KVvIIdEad~Lt------------~~a~naLL 148 (620)
T PRK14954 81 CGECESCRDFDAGTSLNISEFDAASNNSVDDIRQLRENVRYGPQKGRYRVYIIDEVHMLS------------TAAFNAFL 148 (620)
T ss_pred CccCHHHHHHhccCCCCeEEecccccCCHHHHHHHHHHHHhhhhcCCCEEEEEeChhhcC------------HHHHHHHH
Confidence 11 00000 1112345555554442 22345699999999972 23567888
Q ss_pred HHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhh
Q 010366 361 FRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 440 (512)
Q Consensus 361 ~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
..+++.+..++||++|+.+..+.+.+.+|+ ..+.|.+++.++....+...+.....
T Consensus 149 K~LEePp~~tv~IL~t~~~~kLl~TI~SRc-~~vef~~l~~~ei~~~L~~i~~~egi----------------------- 204 (620)
T PRK14954 149 KTLEEPPPHAIFIFATTELHKIPATIASRC-QRFNFKRIPLDEIQSQLQMICRAEGI----------------------- 204 (620)
T ss_pred HHHhCCCCCeEEEEEeCChhhhhHHHHhhc-eEEecCCCCHHHHHHHHHHHHHHcCC-----------------------
Confidence 888888888888888888899999999999 89999999999999888887765322
Q ss_pred cCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC-CCCCccCHHHHHHHH
Q 010366 441 KGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG-SENCVLDPSLFREVV 491 (512)
Q Consensus 441 ~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~-~~~~~it~e~~~~al 491 (512)
.++++.++.|+..+.| +.+++...+..+.+...+ .....||.+++.+++
T Consensus 205 -~I~~eal~~La~~s~G-dlr~al~eLeKL~~y~~~~~~~~~It~~~V~~lv 254 (620)
T PRK14954 205 -QIDADALQLIARKAQG-SMRDAQSILDQVIAFSVGSEAEKVIAYQGVAELL 254 (620)
T ss_pred -CCCHHHHHHHHHHhCC-CHHHHHHHHHHHHHhccccccCCccCHHHHHHHH
Confidence 2889999999999866 667776666544443311 234678888777765
No 110
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=99.73 E-value=1.3e-16 Score=176.02 Aligned_cols=218 Identities=22% Similarity=0.275 Sum_probs=142.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhH
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~ 311 (512)
...+.+|++++|++++......+...... . ...+++||||||||||++|+++|+.++.+|+.+++....
T Consensus 21 k~RP~tldd~vGQe~ii~~~~~L~~~i~~---~--~~~slLL~GPpGtGKTTLA~aIA~~~~~~f~~lna~~~~------ 89 (725)
T PRK13341 21 RLRPRTLEEFVGQDHILGEGRLLRRAIKA---D--RVGSLILYGPPGVGKTTLARIIANHTRAHFSSLNAVLAG------ 89 (725)
T ss_pred hcCCCcHHHhcCcHHHhhhhHHHHHHHhc---C--CCceEEEECCCCCCHHHHHHHHHHHhcCcceeehhhhhh------
Confidence 45678899999999988643333322221 1 123799999999999999999999999999888875321
Q ss_pred HHHHHHHHHHH----HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee--CCCCCCCHH
Q 010366 312 VTKIHQLFDWA----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLDSA 385 (512)
Q Consensus 312 ~~~l~~lf~~a----~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt--N~~~~l~~a 385 (512)
...+...+..+ .....+.+|||||+|.+ +...+.. |+..++ ...+++|++| |....++++
T Consensus 90 i~dir~~i~~a~~~l~~~~~~~IL~IDEIh~L---------n~~qQda---LL~~lE--~g~IiLI~aTTenp~~~l~~a 155 (725)
T PRK13341 90 VKDLRAEVDRAKERLERHGKRTILFIDEVHRF---------NKAQQDA---LLPWVE--NGTITLIGATTENPYFEVNKA 155 (725)
T ss_pred hHHHHHHHHHHHHHhhhcCCceEEEEeChhhC---------CHHHHHH---HHHHhc--CceEEEEEecCCChHhhhhhH
Confidence 12223333322 22234679999999987 2233333 333332 3456777655 334578899
Q ss_pred HHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 386 VADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 386 l~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
+++|+ .++.|++++.+++..+++..+.......+. .. -.++++.++.|+..+.| +.|++..
T Consensus 156 L~SR~-~v~~l~pLs~edi~~IL~~~l~~~~~~~g~--------------~~---v~I~deaL~~La~~s~G-D~R~lln 216 (725)
T PRK13341 156 LVSRS-RLFRLKSLSDEDLHQLLKRALQDKERGYGD--------------RK---VDLEPEAEKHLVDVANG-DARSLLN 216 (725)
T ss_pred hhccc-cceecCCCCHHHHHHHHHHHHHHHHhhcCC--------------cc---cCCCHHHHHHHHHhCCC-CHHHHHH
Confidence 99998 789999999999999999988753211000 00 13889999999998855 5555555
Q ss_pred HHHHHHHHHhCCC--CCccCHHHHHHHHHH
Q 010366 466 LMASVQAAVYGSE--NCVLDPSLFREVVDY 493 (512)
Q Consensus 466 lv~~~~aa~~~~~--~~~it~e~~~~al~~ 493 (512)
++..+........ ...||.+++.+++..
T Consensus 217 ~Le~a~~~~~~~~~~~i~It~~~~~e~l~~ 246 (725)
T PRK13341 217 ALELAVESTPPDEDGLIDITLAIAEESIQQ 246 (725)
T ss_pred HHHHHHHhcccCCCCceeccHHHHHHHHHH
Confidence 5543322221111 123888888887765
No 111
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=99.73 E-value=2.1e-16 Score=160.43 Aligned_cols=205 Identities=22% Similarity=0.286 Sum_probs=140.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-----CeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-----DYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-----~~~~v~~~~~~~ 306 (512)
++.|..|++++|++++...+...+. .+..| +++|+||||||||++++++++.+.. .++.+++++...
T Consensus 10 kyrP~~~~~~~g~~~~~~~l~~~i~------~~~~~--~~ll~G~~G~GKt~~~~~l~~~l~~~~~~~~~i~~~~~~~~~ 81 (319)
T PRK00440 10 KYRPRTLDEIVGQEEIVERLKSYVK------EKNMP--HLLFAGPPGTGKTTAALALARELYGEDWRENFLELNASDERG 81 (319)
T ss_pred hhCCCcHHHhcCcHHHHHHHHHHHh------CCCCC--eEEEECCCCCCHHHHHHHHHHHHcCCccccceEEeccccccc
Confidence 5778889999999999988876652 12223 6999999999999999999998742 345554433221
Q ss_pred CchhHHHHHHHH-HHHHHhc----CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC
Q 010366 307 LGPQAVTKIHQL-FDWAKKS----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 ~~~~~~~~l~~l-f~~a~~~----~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~ 381 (512)
.. .+... ...+... .++.+|+|||+|.+. .... +.++..++....++.+|+++|.+..
T Consensus 82 --~~---~~~~~i~~~~~~~~~~~~~~~vviiDe~~~l~---------~~~~---~~L~~~le~~~~~~~lIl~~~~~~~ 144 (319)
T PRK00440 82 --ID---VIRNKIKEFARTAPVGGAPFKIIFLDEADNLT---------SDAQ---QALRRTMEMYSQNTRFILSCNYSSK 144 (319)
T ss_pred --hH---HHHHHHHHHHhcCCCCCCCceEEEEeCcccCC---------HHHH---HHHHHHHhcCCCCCeEEEEeCCccc
Confidence 11 11111 1222211 224599999999872 2223 3344444545566788888998888
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+.+++.+|+ ..+.|++|+.++...++..++..... .++++.+..++..+.| +.+
T Consensus 145 l~~~l~sr~-~~~~~~~l~~~ei~~~l~~~~~~~~~------------------------~i~~~al~~l~~~~~g-d~r 198 (319)
T PRK00440 145 IIDPIQSRC-AVFRFSPLKKEAVAERLRYIAENEGI------------------------EITDDALEAIYYVSEG-DMR 198 (319)
T ss_pred cchhHHHHh-heeeeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CHH
Confidence 888999999 67999999999999999998876432 2889999999988765 444
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
.+...+ +.+.... ..||.+++..++.
T Consensus 199 ~~~~~l---~~~~~~~--~~it~~~v~~~~~ 224 (319)
T PRK00440 199 KAINAL---QAAAATG--KEVTEEAVYKITG 224 (319)
T ss_pred HHHHHH---HHHHHcC--CCCCHHHHHHHhC
Confidence 444444 3333322 5788888887764
No 112
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=99.73 E-value=3.5e-16 Score=176.56 Aligned_cols=193 Identities=17% Similarity=0.215 Sum_probs=139.3
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC----------CCeEEEeCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----------LDYALMTGG 302 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~----------~~~~~v~~~ 302 (512)
..+..++.+||+++....+..++. +. ...+++|+||||||||++|+.+|..+. ..++.++.+
T Consensus 181 ~r~~~ld~~iGr~~ei~~~i~~l~------r~--~~~n~lLvG~pGvGKTal~~~La~~i~~~~v~~~l~~~~i~~l~l~ 252 (852)
T TIGR03345 181 AREGKIDPVLGRDDEIRQMIDILL------RR--RQNNPILTGEAGVGKTAVVEGLALRIAAGDVPPALRNVRLLSLDLG 252 (852)
T ss_pred hcCCCCCcccCCHHHHHHHHHHHh------cC--CcCceeEECCCCCCHHHHHHHHHHHHhhCCCCccccCCeEEEeehh
Confidence 345678999999998666654431 11 123799999999999999999999862 346666666
Q ss_pred CCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 303 DVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 303 ~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.+. .+.++....+..+++.+.....++||||||++.+.+.++..+.. ... +.|...+ ..+.+.+|+||+..
T Consensus 253 ~l~ag~~~~ge~e~~lk~ii~e~~~~~~~~ILfIDEih~l~~~g~~~~~~-d~~---n~Lkp~l--~~G~l~~IgaTT~~ 326 (852)
T TIGR03345 253 LLQAGASVKGEFENRLKSVIDEVKASPQPIILFIDEAHTLIGAGGQAGQG-DAA---NLLKPAL--ARGELRTIAATTWA 326 (852)
T ss_pred hhhcccccchHHHHHHHHHHHHHHhcCCCeEEEEeChHHhccCCCccccc-cHH---HHhhHHh--hCCCeEEEEecCHH
Confidence 543 35677888999999998765567899999999998755432211 112 2233333 45678999998864
Q ss_pred C-----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH
Q 010366 380 G-----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 454 (512)
Q Consensus 380 ~-----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 454 (512)
+ ..|++|.||| ..|.++.|+.++...|++.....+...+. -.++++++..++..
T Consensus 327 e~~~~~~~d~AL~rRf-~~i~v~eps~~~~~~iL~~~~~~~e~~~~--------------------v~i~d~al~~~~~l 385 (852)
T TIGR03345 327 EYKKYFEKDPALTRRF-QVVKVEEPDEETAIRMLRGLAPVLEKHHG--------------------VLILDEAVVAAVEL 385 (852)
T ss_pred HHhhhhhccHHHHHhC-eEEEeCCCCHHHHHHHHHHHHHhhhhcCC--------------------CeeCHHHHHHHHHH
Confidence 3 5899999999 68999999999999998766655432211 12788889988888
Q ss_pred cCCCcH
Q 010366 455 TEGFSG 460 (512)
Q Consensus 455 t~g~s~ 460 (512)
+.+|-+
T Consensus 386 s~ryi~ 391 (852)
T TIGR03345 386 SHRYIP 391 (852)
T ss_pred cccccc
Confidence 876643
No 113
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=99.73 E-value=1.3e-15 Score=159.45 Aligned_cols=225 Identities=16% Similarity=0.155 Sum_probs=149.9
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC-----
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP----- 306 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~----- 306 (512)
..+.++|.++..+.+..++.... . +..+.+++|+||||||||++++.+++.+ +..+++++|.....
T Consensus 28 ~P~~l~~Re~e~~~l~~~l~~~~---~-~~~~~~~lI~G~~GtGKT~l~~~v~~~l~~~~~~~~~v~in~~~~~~~~~~~ 103 (394)
T PRK00411 28 VPENLPHREEQIEELAFALRPAL---R-GSRPLNVLIYGPPGTGKTTTVKKVFEELEEIAVKVVYVYINCQIDRTRYAIF 103 (394)
T ss_pred cCCCCCCHHHHHHHHHHHHHHHh---C-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEECCcCCCHHHHH
Confidence 35778888888888866654322 1 2233579999999999999999999876 46788998865422
Q ss_pred --------------CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-CCCCEE
Q 010366 307 --------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSKDIV 371 (512)
Q Consensus 307 --------------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-~~~~vi 371 (512)
.+......+..+........++.||+|||+|.+.... ....+..++..... ...++.
T Consensus 104 ~~i~~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~viviDE~d~l~~~~--------~~~~l~~l~~~~~~~~~~~v~ 175 (394)
T PRK00411 104 SEIARQLFGHPPPSSGLSFDELFDKIAEYLDERDRVLIVALDDINYLFEKE--------GNDVLYSLLRAHEEYPGARIG 175 (394)
T ss_pred HHHHHHhcCCCCCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCHhHhhccC--------CchHHHHHHHhhhccCCCeEE
Confidence 1111222334444444444556899999999986211 12345555544432 233788
Q ss_pred EEEeeCCC---CCCCHHHHcccc-ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHH
Q 010366 372 LALATNRP---GDLDSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 447 (512)
Q Consensus 372 iI~ttN~~---~~l~~al~~R~~-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
+|+++|.. +.+++.+.+|+. ..+.|++|+.++...|++..+...... ..++++.
T Consensus 176 vI~i~~~~~~~~~l~~~~~s~~~~~~i~f~py~~~e~~~il~~r~~~~~~~----------------------~~~~~~~ 233 (394)
T PRK00411 176 VIGISSDLTFLYILDPRVKSVFRPEEIYFPPYTADEIFDILKDRVEEGFYP----------------------GVVDDEV 233 (394)
T ss_pred EEEEECCcchhhhcCHHHHhcCCcceeecCCCCHHHHHHHHHHHHHhhccc----------------------CCCCHhH
Confidence 88888765 457888888874 578999999999999999887542110 1378888
Q ss_pred HHHHHHHcCCCc--HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 448 LMEAAAKTEGFS--GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 448 l~~la~~t~g~s--~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
++.++..+.+.+ .+.+..++..+...+...+...||.+++..|++...
T Consensus 234 l~~i~~~~~~~~Gd~r~a~~ll~~a~~~a~~~~~~~I~~~~v~~a~~~~~ 283 (394)
T PRK00411 234 LDLIADLTAREHGDARVAIDLLRRAGLIAEREGSRKVTEEDVRKAYEKSE 283 (394)
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHH
Confidence 999988874432 344444554333334344457899999999998763
No 114
>KOG0736 consensus Peroxisome assembly factor 2 containing the AAA+-type ATPase domain [Posttranslational modification, protein turnover, chaperones]
Probab=99.73 E-value=2.2e-16 Score=167.54 Aligned_cols=205 Identities=21% Similarity=0.321 Sum_probs=162.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 348 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~ 348 (512)
.|||+|+||||||++++++|.++|.+++.++|.++.. .....+..+...|..++... |+||||-++|.|....++ +.
T Consensus 433 ~vLLhG~~g~GK~t~V~~vas~lg~h~~evdc~el~~~s~~~~etkl~~~f~~a~~~~-pavifl~~~dvl~id~dg-ge 510 (953)
T KOG0736|consen 433 SVLLHGPPGSGKTTVVRAVASELGLHLLEVDCYELVAESASHTETKLQAIFSRARRCS-PAVLFLRNLDVLGIDQDG-GE 510 (953)
T ss_pred EEEEeCCCCCChHHHHHHHHHHhCCceEeccHHHHhhcccchhHHHHHHHHHHHhhcC-ceEEEEeccceeeecCCC-ch
Confidence 7999999999999999999999999999999988765 45566778899999999876 899999999998754444 22
Q ss_pred CHHHHHHHHHHHH-Hc-CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcc
Q 010366 349 SEAQRSALNALLF-RT-GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGL 426 (512)
Q Consensus 349 ~~~~~~~l~~ll~-~~-~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~ 426 (512)
......++..++. .. ......++||+|++..+.+++.+++-|...|.++.|+.++|.+|++.++.....
T Consensus 511 d~rl~~~i~~~ls~e~~~~~~~~~ivv~t~~s~~~lp~~i~~~f~~ei~~~~lse~qRl~iLq~y~~~~~~--------- 581 (953)
T KOG0736|consen 511 DARLLKVIRHLLSNEDFKFSCPPVIVVATTSSIEDLPADIQSLFLHEIEVPALSEEQRLEILQWYLNHLPL--------- 581 (953)
T ss_pred hHHHHHHHHHHHhcccccCCCCceEEEEeccccccCCHHHHHhhhhhccCCCCCHHHHHHHHHHHHhcccc---------
Confidence 3334455555554 11 135567999999999999999999999899999999999999999999977532
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHH----HHHHhCC----------------CCCccCHHH
Q 010366 427 VHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASV----QAAVYGS----------------ENCVLDPSL 486 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~----~aa~~~~----------------~~~~it~e~ 486 (512)
-.+..+..+|.++.|||.+++.+++..+ ..-.... ....++++|
T Consensus 582 ----------------n~~v~~k~~a~~t~gfs~~~L~~l~~~~s~~~~~~i~~~~l~g~~~~~~~~~~~~~~~~l~~ed 645 (953)
T KOG0736|consen 582 ----------------NQDVNLKQLARKTSGFSFGDLEALVAHSSLAAKTRIKNKGLAGGLQEEDEGELCAAGFLLTEED 645 (953)
T ss_pred ----------------chHHHHHHHHHhcCCCCHHHHHHHhcCchHHHHHHHHhhcccccchhccccccccccceecHHH
Confidence 2355788899999999999999998332 1111111 125789999
Q ss_pred HHHHHHHHHHHHHHH
Q 010366 487 FREVVDYKVAEHQQR 501 (512)
Q Consensus 487 ~~~al~~~~~~~~~~ 501 (512)
|.+++.....++..-
T Consensus 646 f~kals~~~~~fs~a 660 (953)
T KOG0736|consen 646 FDKALSRLQKEFSDA 660 (953)
T ss_pred HHHHHHHHHHhhhhh
Confidence 999999887776543
No 115
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=99.73 E-value=6.9e-17 Score=169.58 Aligned_cols=223 Identities=15% Similarity=0.183 Sum_probs=145.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~ 306 (512)
..+..+|++++..+........+.....+ ++.++.+++||||||||||+|++++++++ +..++++++.++..
T Consensus 103 l~~~~tfd~fi~g~~n~~a~~~~~~~~~~---~~~~~n~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~~~~~~~ 179 (405)
T TIGR00362 103 LNPKYTFDNFVVGKSNRLAHAAALAVAEN---PGKAYNPLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVSSEKFTN 179 (405)
T ss_pred CCCCCcccccccCCcHHHHHHHHHHHHhC---cCccCCeEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEEHHHHHH
Confidence 45677899976545444444333333322 23334569999999999999999999886 56788888765432
Q ss_pred CchhHH--HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeC-CCC---
Q 010366 307 LGPQAV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN-RPG--- 380 (512)
Q Consensus 307 ~~~~~~--~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN-~~~--- 380 (512)
...... ..+....... ....+|+|||++.+.++. ..+..+..++..+.+.. ..+|+|+| .|.
T Consensus 180 ~~~~~~~~~~~~~~~~~~---~~~dlLiiDDi~~l~~~~-------~~~~~l~~~~n~~~~~~--~~iiits~~~p~~l~ 247 (405)
T TIGR00362 180 DFVNALRNNKMEEFKEKY---RSVDLLLIDDIQFLAGKE-------RTQEEFFHTFNALHENG--KQIVLTSDRPPKELP 247 (405)
T ss_pred HHHHHHHcCCHHHHHHHH---HhCCEEEEehhhhhcCCH-------HHHHHHHHHHHHHHHCC--CCEEEecCCCHHHHh
Confidence 100000 0111111112 235799999999875322 22333444444432222 23444554 343
Q ss_pred CCCHHHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCC
Q 010366 381 DLDSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 458 (512)
Q Consensus 381 ~l~~al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 458 (512)
.+++.+.+||. ..+.|++|+.++|..|++..+..... .++++.++.||....+
T Consensus 248 ~l~~~l~SRl~~g~~v~i~~pd~~~r~~il~~~~~~~~~------------------------~l~~e~l~~ia~~~~~- 302 (405)
T TIGR00362 248 GLEERLRSRFEWGLVVDIEPPDLETRLAILQKKAEEEGL------------------------ELPDEVLEFIAKNIRS- 302 (405)
T ss_pred hhhhhhhhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhcCC-
Confidence 46789999995 47999999999999999999876422 2899999999998866
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 459 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 459 s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
+.+++..++..+.+.+...+ ..||.+.+.+++....
T Consensus 303 ~~r~l~~~l~~l~~~a~~~~-~~it~~~~~~~L~~~~ 338 (405)
T TIGR00362 303 NVRELEGALNRLLAYASLTG-KPITLELAKEALKDLL 338 (405)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHhc
Confidence 88999999877766554332 5688888888887653
No 116
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=99.73 E-value=1.3e-16 Score=156.45 Aligned_cols=226 Identities=22% Similarity=0.287 Sum_probs=151.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---eEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---~~~v~~~~~~~~~ 308 (512)
...+.+++++||++++..+ ..+++... ..+..| +++|+||||||||++|+.|+.....+ |+.++...
T Consensus 131 rmRPktL~dyvGQ~hlv~q-~gllrs~i--eq~~ip--SmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~----- 200 (554)
T KOG2028|consen 131 RMRPKTLDDYVGQSHLVGQ-DGLLRSLI--EQNRIP--SMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATN----- 200 (554)
T ss_pred hcCcchHHHhcchhhhcCc-chHHHHHH--HcCCCC--ceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccc-----
Confidence 3456778999999998876 33333221 111223 89999999999999999999987655 55555422
Q ss_pred hhHHHHHHHHHHHHHhc----CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee--CCCCCC
Q 010366 309 PQAVTKIHQLFDWAKKS----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDL 382 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~----~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt--N~~~~l 382 (512)
.....++.+|+.+.+. ++..|||||||+.+- +.....||-.+ ..+.+.+|++| |..-.+
T Consensus 201 -a~t~dvR~ife~aq~~~~l~krkTilFiDEiHRFN------------ksQQD~fLP~V--E~G~I~lIGATTENPSFql 265 (554)
T KOG2028|consen 201 -AKTNDVRDIFEQAQNEKSLTKRKTILFIDEIHRFN------------KSQQDTFLPHV--ENGDITLIGATTENPSFQL 265 (554)
T ss_pred -cchHHHHHHHHHHHHHHhhhcceeEEEeHHhhhhh------------hhhhhccccee--ccCceEEEecccCCCccch
Confidence 3345677788877653 345799999999962 22233444444 45678888865 556689
Q ss_pred CHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 383 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 383 ~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
+.++++|| .++.+...+.+....|+..-+.-+........+ + +... -.+++..++.++..+.|-.-+.
T Consensus 266 n~aLlSRC-~VfvLekL~~n~v~~iL~raia~l~dser~~~~------l---~n~s--~~ve~siidyla~lsdGDaR~a 333 (554)
T KOG2028|consen 266 NAALLSRC-RVFVLEKLPVNAVVTILMRAIASLGDSERPTDP------L---PNSS--MFVEDSIIDYLAYLSDGDARAA 333 (554)
T ss_pred hHHHHhcc-ceeEeccCCHHHHHHHHHHHHHhhccccccCCC------C---CCcc--hhhhHHHHHHHHHhcCchHHHH
Confidence 99999999 899999999999999998876644322100000 0 0000 0177889999999999866666
Q ss_pred HHHHHHHHHHHHhCC---CCCccCHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGS---ENCVLDPSLFREVVDYK 494 (512)
Q Consensus 463 I~~lv~~~~aa~~~~---~~~~it~e~~~~al~~~ 494 (512)
+..|-..+......+ .+..++.+|+.+++...
T Consensus 334 LN~Lems~~m~~tr~g~~~~~~lSidDvke~lq~s 368 (554)
T KOG2028|consen 334 LNALEMSLSMFCTRSGQSSRVLLSIDDVKEGLQRS 368 (554)
T ss_pred HHHHHHHHHHHHhhcCCcccceecHHHHHHHHhhc
Confidence 666554322222222 33579999999988754
No 117
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=99.72 E-value=2.1e-16 Score=163.55 Aligned_cols=156 Identities=22% Similarity=0.316 Sum_probs=114.3
Q ss_pred CCCccccChHHHHHHHHHHHHhhc-hhhc-CCCCcceEEecCCCCchHHHHHHHHHHhCCCe------------------
Q 010366 237 GFGDVILHPSLQKRIRQLSGATAN-TKAH-NAPFRNMLFYGPPGTGKTMAARELARKSGLDY------------------ 296 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~-~~~~-~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~------------------ 296 (512)
.|++|+|++.+++.+...+..... .... ...+.++||+||||+|||++|+++|..+.+..
T Consensus 3 ~f~~IiGq~~~~~~L~~~i~~~~~~~~~~~~~l~ha~Lf~Gp~G~GKt~lA~~lA~~l~c~~~~~~~Cg~C~~C~~~~~~ 82 (394)
T PRK07940 3 VWDDLVGQEAVVAELRAAARAARADVAAAGSGMTHAWLFTGPPGSGRSVAARAFAAALQCTDPDEPGCGECRACRTVLAG 82 (394)
T ss_pred hhhhccChHHHHHHHHHHHHhccccccccCCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcC
Confidence 389999999999999887765332 1111 12346799999999999999999999875431
Q ss_pred -----EEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCC
Q 010366 297 -----ALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSK 368 (512)
Q Consensus 297 -----~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~ 368 (512)
..+.... ..-....++.+++.+... .++.|+||||+|.+. ....|.||..+++.+.
T Consensus 83 ~hpD~~~i~~~~----~~i~i~~iR~l~~~~~~~p~~~~~kViiIDead~m~------------~~aanaLLk~LEep~~ 146 (394)
T PRK07940 83 THPDVRVVAPEG----LSIGVDEVRELVTIAARRPSTGRWRIVVIEDADRLT------------ERAANALLKAVEEPPP 146 (394)
T ss_pred CCCCEEEecccc----ccCCHHHHHHHHHHHHhCcccCCcEEEEEechhhcC------------HHHHHHHHHHhhcCCC
Confidence 1111110 112234567777766542 235699999999972 2234777888888888
Q ss_pred CEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHH
Q 010366 369 DIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLK 409 (512)
Q Consensus 369 ~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~ 409 (512)
++++|++|+.++.+.|.++||+ ..+.|++|+.++...++.
T Consensus 147 ~~~fIL~a~~~~~llpTIrSRc-~~i~f~~~~~~~i~~~L~ 186 (394)
T PRK07940 147 RTVWLLCAPSPEDVLPTIRSRC-RHVALRTPSVEAVAEVLV 186 (394)
T ss_pred CCeEEEEECChHHChHHHHhhC-eEEECCCCCHHHHHHHHH
Confidence 8888888888999999999999 899999999999877776
No 118
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=99.72 E-value=7.2e-16 Score=149.08 Aligned_cols=204 Identities=18% Similarity=0.236 Sum_probs=137.3
Q ss_pred ccCCCCCCccccCh--HHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHP--SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~--~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~ 306 (512)
..++.+|+++++.. .+...+..+. . ...+..+++|+||||||||++|+++++.+ +.+++++++.....
T Consensus 11 ~~~~~~~d~f~~~~~~~~~~~l~~~~---~----~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~~~~~~~ 83 (227)
T PRK08903 11 PPPPPTFDNFVAGENAELVARLRELA---A----GPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLDAASPLL 83 (227)
T ss_pred CCChhhhcccccCCcHHHHHHHHHHH---h----ccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEehHHhHH
Confidence 45667899998443 3333333322 1 12233579999999999999999999875 56788888765321
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC-C--CCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-P--GDLD 383 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~-~--~~l~ 383 (512)
.+.. ...+.+|+|||+|.+. ...+..+..++...... ...++|++++. + ..+.
T Consensus 84 -----------~~~~---~~~~~~liiDdi~~l~---------~~~~~~L~~~~~~~~~~-~~~~vl~~~~~~~~~~~l~ 139 (227)
T PRK08903 84 -----------AFDF---DPEAELYAVDDVERLD---------DAQQIALFNLFNRVRAH-GQGALLVAGPAAPLALPLR 139 (227)
T ss_pred -----------HHhh---cccCCEEEEeChhhcC---------chHHHHHHHHHHHHHHc-CCcEEEEeCCCCHHhCCCC
Confidence 1111 1236799999999862 23344555555554332 23334445443 2 2456
Q ss_pred HHHHccc--cceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~R~--~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+.+.+|| ...+.+++|+.+++..++......... .++++.++.|+....| +.+
T Consensus 140 ~~L~sr~~~~~~i~l~pl~~~~~~~~l~~~~~~~~v------------------------~l~~~al~~L~~~~~g-n~~ 194 (227)
T PRK08903 140 EDLRTRLGWGLVYELKPLSDADKIAALKAAAAERGL------------------------QLADEVPDYLLTHFRR-DMP 194 (227)
T ss_pred HHHHHHHhcCeEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhccC-CHH
Confidence 8888888 478999999999888888876554322 2899999999996554 899
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
++..++..+...+...+ ..||...+.+++.
T Consensus 195 ~l~~~l~~l~~~~~~~~-~~i~~~~~~~~l~ 224 (227)
T PRK08903 195 SLMALLDALDRYSLEQK-RPVTLPLLREMLA 224 (227)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHHh
Confidence 99999987765543333 7899999999874
No 119
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=99.72 E-value=2.4e-16 Score=166.02 Aligned_cols=228 Identities=13% Similarity=0.143 Sum_probs=143.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchh-hcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTK-AHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL 307 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~-~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~ 307 (512)
..+..+|++++..+........+........ .++.+.++++||||||+|||+|++++++.+ +..++++++..+...
T Consensus 104 l~~~~tFdnFv~g~~N~~a~~~a~~~a~~~~~~~~~~~npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~~~f~~~ 183 (445)
T PRK12422 104 LDPLMTFANFLVTPENDLPHRILQEFTKVSEQGKGFPFNPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRSELFTEH 183 (445)
T ss_pred CCccccccceeeCCcHHHHHHHHHHHHhccccccCCCCceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeHHHHHHH
Confidence 4677889999865555544433333322221 222344679999999999999999999876 577888876544321
Q ss_pred chhHHH-HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC-C---CCC
Q 010366 308 GPQAVT-KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-P---GDL 382 (512)
Q Consensus 308 ~~~~~~-~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~-~---~~l 382 (512)
...... .-...|... .....+|+|||++.+.++. ..+..+..+++.+... .. .+|+|+|. | ..+
T Consensus 184 ~~~~l~~~~~~~f~~~--~~~~dvLiIDDiq~l~~k~-------~~qeelf~l~N~l~~~-~k-~IIlts~~~p~~l~~l 252 (445)
T PRK12422 184 LVSAIRSGEMQRFRQF--YRNVDALFIEDIEVFSGKG-------ATQEEFFHTFNSLHTE-GK-LIVISSTCAPQDLKAM 252 (445)
T ss_pred HHHHHhcchHHHHHHH--cccCCEEEEcchhhhcCCh-------hhHHHHHHHHHHHHHC-CC-cEEEecCCCHHHHhhh
Confidence 111100 000112221 2346799999999874322 2222333333332111 22 45555554 4 357
Q ss_pred CHHHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH
Q 010366 383 DSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 460 (512)
Q Consensus 383 ~~al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~ 460 (512)
++.+.+||. .++.+++|+.+++..|++..+..... .+++++++.|+....+ +.
T Consensus 253 ~~rL~SR~~~Gl~~~l~~pd~e~r~~iL~~k~~~~~~------------------------~l~~evl~~la~~~~~-di 307 (445)
T PRK12422 253 EERLISRFEWGIAIPLHPLTKEGLRSFLERKAEALSI------------------------RIEETALDFLIEALSS-NV 307 (445)
T ss_pred HHHHHhhhcCCeEEecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhcCC-CH
Confidence 799999994 78999999999999999998876432 2899999999998765 56
Q ss_pred HHHHHHHHHHH--HHHhCCCCCccCHHHHHHHHHHHH
Q 010366 461 REIAKLMASVQ--AAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 461 ~dI~~lv~~~~--aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
+++...+..+. .+...-....||.+++.+++....
T Consensus 308 r~L~g~l~~l~~~~a~~~~~~~~i~~~~~~~~l~~~~ 344 (445)
T PRK12422 308 KSLLHALTLLAKRVAYKKLSHQLLYVDDIKALLHDVL 344 (445)
T ss_pred HHHHHHHHHHHHHHHHHHhhCCCCCHHHHHHHHHHhh
Confidence 67766664442 111111225689999999987654
No 120
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.71 E-value=5.2e-16 Score=169.48 Aligned_cols=206 Identities=19% Similarity=0.228 Sum_probs=149.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe---------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY--------------- 296 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~--------------- 296 (512)
++.+.+|++|||++.+++.|...+.. +..+..+|||||+|||||++|+.+|+.+.+..
T Consensus 9 kyRP~~~~eiiGq~~~~~~L~~~i~~-------~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~c~~~~~~~~~c~~c~~c~ 81 (585)
T PRK14950 9 KWRSQTFAELVGQEHVVQTLRNAIAE-------GRVAHAYLFTGPRGVGKTSTARILAKAVNCTTNDPKGRPCGTCEMCR 81 (585)
T ss_pred HhCCCCHHHhcCCHHHHHHHHHHHHh-------CCCceEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCCccCHHHH
Confidence 57888899999999999998766532 22334589999999999999999999875421
Q ss_pred ----------EEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 297 ----------ALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 297 ----------~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
+.++.. .......++.+.+.+.. ...+.||||||+|.|. ...++.|+..+
T Consensus 82 ~i~~~~~~d~~~i~~~-----~~~~vd~ir~ii~~~~~~p~~~~~kVvIIDEa~~L~------------~~a~naLLk~L 144 (585)
T PRK14950 82 AIAEGSAVDVIEMDAA-----SHTSVDDAREIIERVQFRPALARYKVYIIDEVHMLS------------TAAFNALLKTL 144 (585)
T ss_pred HHhcCCCCeEEEEecc-----ccCCHHHHHHHHHHHhhCcccCCeEEEEEeChHhCC------------HHHHHHHHHHH
Confidence 112211 11122334444443332 2345799999999872 24567778888
Q ss_pred CCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 364 GDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 364 ~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
++...+++||++++..+.+.+.+.+|+ ..+.|+.++..+...++...+..... .+
T Consensus 145 Eepp~~tv~Il~t~~~~kll~tI~SR~-~~i~f~~l~~~el~~~L~~~a~~egl------------------------~i 199 (585)
T PRK14950 145 EEPPPHAIFILATTEVHKVPATILSRC-QRFDFHRHSVADMAAHLRKIAAAEGI------------------------NL 199 (585)
T ss_pred hcCCCCeEEEEEeCChhhhhHHHHhcc-ceeeCCCCCHHHHHHHHHHHHHHcCC------------------------CC
Confidence 777788899998888888889999999 78999999999999998888765432 27
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+++.+..|+..+.| +.+++..++..+.. +. ...||.+++..++
T Consensus 200 ~~eal~~La~~s~G-dlr~al~~LekL~~--y~--~~~It~e~V~~ll 242 (585)
T PRK14950 200 EPGALEAIARAATG-SMRDAENLLQQLAT--TY--GGEISLSQVQSLL 242 (585)
T ss_pred CHHHHHHHHHHcCC-CHHHHHHHHHHHHH--hc--CCCCCHHHHHHHh
Confidence 88999999998866 78888777765433 32 2468888877654
No 121
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=99.71 E-value=2.7e-16 Score=168.24 Aligned_cols=225 Identities=14% Similarity=0.172 Sum_probs=148.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~ 306 (512)
..+..+|+++|..+.....+..+.....+. +...+.++|||++|||||+|++++++++ +..++++++.++..
T Consensus 281 L~~~~TFDnFvvG~sN~~A~aaa~avae~~---~~~~NpL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yitaeef~~ 357 (617)
T PRK14086 281 LNPKYTFDTFVIGASNRFAHAAAVAVAEAP---AKAYNPLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVSSEEFTN 357 (617)
T ss_pred CCCCCCHhhhcCCCccHHHHHHHHHHHhCc---cccCCcEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHHH
Confidence 356688999987666554443333322222 2222359999999999999999999876 45778888766542
Q ss_pred CchhH-HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC----CC
Q 010366 307 LGPQA-VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP----GD 381 (512)
Q Consensus 307 ~~~~~-~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~----~~ 381 (512)
..... .......|. .......+|+||||+.+..+. .....|..+++.+.+... .||+|+|.+ ..
T Consensus 358 el~~al~~~~~~~f~--~~y~~~DLLlIDDIq~l~gke-------~tqeeLF~l~N~l~e~gk--~IIITSd~~P~eL~~ 426 (617)
T PRK14086 358 EFINSIRDGKGDSFR--RRYREMDILLVDDIQFLEDKE-------STQEEFFHTFNTLHNANK--QIVLSSDRPPKQLVT 426 (617)
T ss_pred HHHHHHHhccHHHHH--HHhhcCCEEEEehhccccCCH-------HHHHHHHHHHHHHHhcCC--CEEEecCCChHhhhh
Confidence 11111 111111222 222346899999999885432 222334444444432222 345566653 35
Q ss_pred CCHHHHccc--cceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~R~--~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+++.|.+|| ..++.+..|+.+.|..||+..+..... .++++++++|+.+..+ +
T Consensus 427 l~~rL~SRf~~GLvv~I~~PD~EtR~aIL~kka~~r~l------------------------~l~~eVi~yLa~r~~r-n 481 (617)
T PRK14086 427 LEDRLRNRFEWGLITDVQPPELETRIAILRKKAVQEQL------------------------NAPPEVLEFIASRISR-N 481 (617)
T ss_pred ccHHHHhhhhcCceEEcCCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHhccC-C
Confidence 789999999 577899999999999999998876432 2899999999999876 7
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~ 496 (512)
.++|..++..+.+.+...+ ..||.+.+.++++....
T Consensus 482 vR~LegaL~rL~a~a~~~~-~~itl~la~~vL~~~~~ 517 (617)
T PRK14086 482 IRELEGALIRVTAFASLNR-QPVDLGLTEIVLRDLIP 517 (617)
T ss_pred HHHHHHHHHHHHHHHHhhC-CCCCHHHHHHHHHHhhc
Confidence 8899988876655444332 56888888888876543
No 122
>PRK05642 DNA replication initiation factor; Validated
Probab=99.71 E-value=4.9e-16 Score=150.79 Aligned_cols=214 Identities=15% Similarity=0.165 Sum_probs=138.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
..+..+|++++..+. . .....+..... ...+.+..+++|+||+|||||+|++++++++ +..+++++..++....
T Consensus 12 ~~~~~tfdnF~~~~~-~-~a~~~~~~~~~-~~~~~~~~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~~~~~~~~~ 88 (234)
T PRK05642 12 LRDDATFANYYPGAN-A-AALGYVERLCE-ADAGWTESLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLPLAELLDRG 88 (234)
T ss_pred CCCcccccccCcCCh-H-HHHHHHHHHhh-ccccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEeeHHHHHhhh
Confidence 456778999984432 1 12222211111 1122334579999999999999999998764 5677788776544321
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC---CCCHH
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---DLDSA 385 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~---~l~~a 385 (512)
..+.+... ...+|+|||++.+.++. .....|..+++...+ .+..+||+++..|. ...|.
T Consensus 89 -------~~~~~~~~---~~d~LiiDDi~~~~~~~-------~~~~~Lf~l~n~~~~-~g~~ilits~~~p~~l~~~~~~ 150 (234)
T PRK05642 89 -------PELLDNLE---QYELVCLDDLDVIAGKA-------DWEEALFHLFNRLRD-SGRRLLLAASKSPRELPIKLPD 150 (234)
T ss_pred -------HHHHHhhh---hCCEEEEechhhhcCCh-------HHHHHHHHHHHHHHh-cCCEEEEeCCCCHHHcCccCcc
Confidence 12222222 24699999999864321 223445555554422 22344444444443 34689
Q ss_pred HHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHH
Q 010366 386 VADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 463 (512)
Q Consensus 386 l~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI 463 (512)
+.|||. .++.+.+|+.+++..+++..+..... .+++++++.|+.+..+ +.+.+
T Consensus 151 L~SRl~~gl~~~l~~~~~e~~~~il~~ka~~~~~------------------------~l~~ev~~~L~~~~~~-d~r~l 205 (234)
T PRK05642 151 LKSRLTLALVFQMRGLSDEDKLRALQLRASRRGL------------------------HLTDEVGHFILTRGTR-SMSAL 205 (234)
T ss_pred HHHHHhcCeeeecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhcCC-CHHHH
Confidence 999994 77889999999999999976544211 2899999999999877 88899
Q ss_pred HHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 464 AKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 464 ~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
..++..+..++...+ ..||...+++++.
T Consensus 206 ~~~l~~l~~~~l~~~-~~it~~~~~~~L~ 233 (234)
T PRK05642 206 FDLLERLDQASLQAQ-RKLTIPFLKETLG 233 (234)
T ss_pred HHHHHHHHHHHHHcC-CcCCHHHHHHHhc
Confidence 998877765544432 6699999988874
No 123
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=99.71 E-value=2.5e-16 Score=151.94 Aligned_cols=206 Identities=17% Similarity=0.237 Sum_probs=136.8
Q ss_pred cCCCCCCcccc--ChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC
Q 010366 233 KNGNGFGDVIL--HPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL 307 (512)
Q Consensus 233 ~~~~~~~~vvg--~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~ 307 (512)
..+.+|++++. ...+...+..++. .....+++|+||||||||++|+++++.+ +.+++++++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~~l~~~~~--------~~~~~~lll~G~~G~GKT~la~~~~~~~~~~~~~~~~i~~~~~~~~ 80 (226)
T TIGR03420 9 PDDPTFDNFYAGGNAELLAALRQLAA--------GKGDRFLYLWGESGSGKSHLLQAACAAAEERGKSAIYLPLAELAQA 80 (226)
T ss_pred CCchhhcCcCcCCcHHHHHHHHHHHh--------cCCCCeEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEeHHHHHHh
Confidence 34566899984 2234444443321 2234579999999999999999999876 467888888765432
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC-CCCC---C
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PGDL---D 383 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~-~~~l---~ 383 (512)
. ..++... ....+|+|||++.+... ......+..++....... ..+|+|++. +..+ .
T Consensus 81 ~-------~~~~~~~---~~~~lLvIDdi~~l~~~-------~~~~~~L~~~l~~~~~~~--~~iIits~~~~~~~~~~~ 141 (226)
T TIGR03420 81 D-------PEVLEGL---EQADLVCLDDVEAIAGQ-------PEWQEALFHLYNRVREAG--GRLLIAGRAAPAQLPLRL 141 (226)
T ss_pred H-------HHHHhhc---ccCCEEEEeChhhhcCC-------hHHHHHHHHHHHHHHHcC--CeEEEECCCChHHCCccc
Confidence 1 1222222 22569999999987321 112334445554432222 245555553 3332 3
Q ss_pred HHHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+.+.+|+. ..+.+|+|+.+++..+++.++..... .++++.+..|+.. .+.+.+
T Consensus 142 ~~L~~r~~~~~~i~l~~l~~~e~~~~l~~~~~~~~~------------------------~~~~~~l~~L~~~-~~gn~r 196 (226)
T TIGR03420 142 PDLRTRLAWGLVFQLPPLSDEEKIAALQSRAARRGL------------------------QLPDEVADYLLRH-GSRDMG 196 (226)
T ss_pred HHHHHHHhcCeeEecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHh-ccCCHH
Confidence 78888874 68999999999999999877654321 2889999999996 556999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++..++..+..++...+ ..||.+.+.+++
T Consensus 197 ~L~~~l~~~~~~~~~~~-~~i~~~~~~~~~ 225 (226)
T TIGR03420 197 SLMALLDALDRASLAAK-RKITIPFVKEVL 225 (226)
T ss_pred HHHHHHHHHHHHHHHhC-CCCCHHHHHHHh
Confidence 99999987776554433 579999988876
No 124
>PRK05342 clpX ATP-dependent protease ATP-binding subunit ClpX; Provisional
Probab=99.71 E-value=3e-16 Score=163.16 Aligned_cols=219 Identities=21% Similarity=0.258 Sum_probs=138.9
Q ss_pred CccccChHHHHHHHHHH-HHhhchh-------hcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC--Cc
Q 010366 239 GDVILHPSLQKRIRQLS-GATANTK-------AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LG 308 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~-~~~~~~~-------~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~--~~ 308 (512)
+.|||++.+++.+...+ ....... ....+..++||+||||||||++|+++|..++.||+.++++.+.. +.
T Consensus 71 ~~ViGq~~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~~~iLl~Gp~GtGKT~lAr~lA~~l~~pf~~id~~~l~~~gyv 150 (412)
T PRK05342 71 QYVIGQERAKKVLSVAVYNHYKRLRHGDKKDDDVELQKSNILLIGPTGSGKTLLAQTLARILDVPFAIADATTLTEAGYV 150 (412)
T ss_pred hHeeChHHHHHHHHHHHHHHHHhhhcccccccccccCCceEEEEcCCCCCHHHHHHHHHHHhCCCceecchhhcccCCcc
Confidence 35899999999985443 2211111 11124468999999999999999999999999999999987654 22
Q ss_pred hh-HHHHHHHHHHHH---HhcCCCcEEEEccchhhhhhcccCC-----CCHHHHHHHHHHHHHc-------C---CCCCC
Q 010366 309 PQ-AVTKIHQLFDWA---KKSKRGLLLFIDEADAFLCERNKTY-----MSEAQRSALNALLFRT-------G---DQSKD 369 (512)
Q Consensus 309 ~~-~~~~l~~lf~~a---~~~~~~~vl~lDEid~l~~~~~~~~-----~~~~~~~~l~~ll~~~-------~---~~~~~ 369 (512)
+. ....+..++..+ ....+++||||||||++...+.+.. .....+..|..+|... + ....+
T Consensus 151 G~d~e~~l~~l~~~~~~~~~~a~~gIi~iDEIdkl~~~~~~~~~~~d~s~~~vQ~~LL~~Leg~~~~v~~~gg~~~~~~~ 230 (412)
T PRK05342 151 GEDVENILLKLLQAADYDVEKAQRGIVYIDEIDKIARKSENPSITRDVSGEGVQQALLKILEGTVASVPPQGGRKHPQQE 230 (412)
T ss_pred cchHHHHHHHHHHhccccHHHcCCcEEEEechhhhccccCCCCcCCCcccHHHHHHHHHHHhcCeEEeCCCCCcCcCCCC
Confidence 32 223333333321 1123478999999999976633211 1123455555555421 0 01224
Q ss_pred EEEEEeeCCCC----------------------------------------------------CCCHHHHccccceeecC
Q 010366 370 IVLALATNRPG----------------------------------------------------DLDSAVADRIDEVLEFP 397 (512)
Q Consensus 370 viiI~ttN~~~----------------------------------------------------~l~~al~~R~~~~i~~~ 397 (512)
+++|.|+|... .+.|+|+.|++.++.|.
T Consensus 231 ~~~i~t~nilfi~~Gaf~g~~~~~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~~~dL~~~gf~PEflgRld~iv~f~ 310 (412)
T PRK05342 231 FIQVDTTNILFICGGAFDGLEKIIKQRLGKKGIGFGAEVKSKKEKRTEGELLKQVEPEDLIKFGLIPEFIGRLPVVATLE 310 (412)
T ss_pred eEEeccCCceeeecccccCcHHHHHHHHhhcccCCccccccccccchhHHHHHhcCHHHHHHHhhhHHHhCCCCeeeecC
Confidence 55666655400 14689999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH--cCCCcHHHHHHHHH
Q 010366 398 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK--TEGFSGREIAKLMA 468 (512)
Q Consensus 398 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~g~s~~dI~~lv~ 468 (512)
+++.+++..|+....+....+ +.++++... +.+ .+++++++.|++. ..++-.|.|+.++.
T Consensus 311 ~L~~~~L~~Il~~~~~~l~~q--------~~~~l~~~~--i~L-~~t~~al~~Ia~~~~~~~~GAR~Lrriie 372 (412)
T PRK05342 311 ELDEEALVRILTEPKNALVKQ--------YQKLFEMDG--VEL-EFTDEALEAIAKKAIERKTGARGLRSILE 372 (412)
T ss_pred CCCHHHHHHHHHHHHHHHHHH--------HHHHHHhCC--cEE-EECHHHHHHHHHhCCCCCCCCchHHHHHH
Confidence 999999999998544332211 111222212 221 3899999999987 34566788888873
No 125
>PRK06620 hypothetical protein; Validated
Probab=99.71 E-value=6.1e-16 Score=147.83 Aligned_cols=201 Identities=14% Similarity=0.159 Sum_probs=135.2
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCC-CcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCch
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAP-FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGP 309 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p-~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~ 309 (512)
+..+..+|+++|..+.....+..+......+. ..| .++++|||||||||||+++++++..+..+ ++.....
T Consensus 8 ~~~~~~tfd~Fvvg~~N~~a~~~~~~~~~~~~--~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~--~~~~~~~---- 79 (214)
T PRK06620 8 TTSSKYHPDEFIVSSSNDQAYNIIKNWQCGFG--VNPYKFTLLIKGPSSSGKTYLTKIWQNLSNAYI--IKDIFFN---- 79 (214)
T ss_pred CCCCCCCchhhEecccHHHHHHHHHHHHHccc--cCCCcceEEEECCCCCCHHHHHHHHHhccCCEE--cchhhhc----
Confidence 35677789999988877666655554432211 123 25799999999999999999998876432 2211100
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC--CCHHHH
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD--LDSAVA 387 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~--l~~al~ 387 (512)
...+ ....+|+||||+.+ ....+..+++.+.+. +..++|+++..|.. + |+++
T Consensus 80 ------~~~~------~~~d~lliDdi~~~------------~~~~lf~l~N~~~e~-g~~ilits~~~p~~l~l-~~L~ 133 (214)
T PRK06620 80 ------EEIL------EKYNAFIIEDIENW------------QEPALLHIFNIINEK-QKYLLLTSSDKSRNFTL-PDLS 133 (214)
T ss_pred ------hhHH------hcCCEEEEeccccc------------hHHHHHHHHHHHHhc-CCEEEEEcCCCccccch-HHHH
Confidence 0111 12579999999964 112334444444333 34555655544443 5 8999
Q ss_pred cccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 388 DRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 388 ~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
||+. .++.+.+|+.+++..+++..+..... .+++++++.|+....| +.+.+..
T Consensus 134 SRl~~gl~~~l~~pd~~~~~~~l~k~~~~~~l------------------------~l~~ev~~~L~~~~~~-d~r~l~~ 188 (214)
T PRK06620 134 SRIKSVLSILLNSPDDELIKILIFKHFSISSV------------------------TISRQIIDFLLVNLPR-EYSKIIE 188 (214)
T ss_pred HHHhCCceEeeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHccC-CHHHHHH
Confidence 9994 37899999999999999988875322 2899999999999876 7888888
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 466 LMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 466 lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++..+...+...+ ..||.+.+.+++
T Consensus 189 ~l~~l~~~~~~~~-~~it~~~~~~~l 213 (214)
T PRK06620 189 ILENINYFALISK-RKITISLVKEVL 213 (214)
T ss_pred HHHHHHHHHHHcC-CCCCHHHHHHHh
Confidence 8877655444333 579999998876
No 126
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=99.71 E-value=1e-15 Score=169.76 Aligned_cols=226 Identities=18% Similarity=0.166 Sum_probs=154.5
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCCC
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 303 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~~ 303 (512)
....++.++|.+.....+..++... ...++||+||||||||++|+.+|... +..++.++.+.
T Consensus 181 ~~g~~~~liGR~~ei~~~i~iL~r~--------~~~n~LLvGppGvGKT~lae~la~~i~~~~vP~~l~~~~~~~l~~~~ 252 (758)
T PRK11034 181 RVGGIDPLIGREKELERAIQVLCRR--------RKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIGS 252 (758)
T ss_pred HcCCCCcCcCCCHHHHHHHHHHhcc--------CCCCeEEECCCCCCHHHHHHHHHHHHHhcCCCchhcCCeEEeccHHH
Confidence 3455789999999888887655331 12478999999999999999999874 23344444333
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC
Q 010366 304 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 380 (512)
Q Consensus 304 ~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~ 380 (512)
+. .+.++....+..++..+.... ++||||||++.|++.+..........+.+..++ ..+.+.+|++||.++
T Consensus 253 llaG~~~~Ge~e~rl~~l~~~l~~~~-~~ILfIDEIh~L~g~g~~~~g~~d~~nlLkp~L-----~~g~i~vIgATt~~E 326 (758)
T PRK11034 253 LLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQVDAANLIKPLL-----SSGKIRVIGSTTYQE 326 (758)
T ss_pred HhcccchhhhHHHHHHHHHHHHHhcC-CCEEEeccHHHHhccCCCCCcHHHHHHHHHHHH-----hCCCeEEEecCChHH
Confidence 22 134566778888888887644 789999999999876643322223333444444 356799999998864
Q ss_pred -----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc
Q 010366 381 -----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 455 (512)
Q Consensus 381 -----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 455 (512)
..|++|.||| ..|.++.|+.+++..|++.....+...+.. .++++++..++..+
T Consensus 327 ~~~~~~~D~AL~rRF-q~I~v~ePs~~~~~~IL~~~~~~ye~~h~v--------------------~i~~~al~~a~~ls 385 (758)
T PRK11034 327 FSNIFEKDRALARRF-QKIDITEPSIEETVQIINGLKPKYEAHHDV--------------------RYTAKAVRAAVELA 385 (758)
T ss_pred HHHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHhhhccCC--------------------CcCHHHHHHHHHHh
Confidence 5799999999 689999999999999999887776543221 27788888777665
Q ss_pred CC-----CcHHHHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHH
Q 010366 456 EG-----FSGREIAKLMASVQAAVYG----SENCVLDPSLFREVVDYK 494 (512)
Q Consensus 456 ~g-----~s~~dI~~lv~~~~aa~~~----~~~~~it~e~~~~al~~~ 494 (512)
.. +-|.....++..+.+...- .....++.+++.+++...
T Consensus 386 ~ryi~~r~lPdKaidlldea~a~~~~~~~~~~~~~v~~~~i~~v~~~~ 433 (758)
T PRK11034 386 VKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_pred hccccCccChHHHHHHHHHHHHhhccCcccccccccChhhHHHHHHHH
Confidence 44 3344555555433322211 112458888888887554
No 127
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.70 E-value=7.5e-16 Score=168.02 Aligned_cols=209 Identities=23% Similarity=0.296 Sum_probs=149.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEE----EeCC-----
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYAL----MTGG----- 302 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~----v~~~----- 302 (512)
++.+..|++++|++.++..|...+.. +....++||+||+|||||++|+++|+.+.+.... ..|+
T Consensus 9 kyRP~~f~~liGq~~i~~~L~~~l~~-------~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c~~~~~~~~~~Cg~C~~C 81 (620)
T PRK14948 9 KYRPQRFDELVGQEAIATTLKNALIS-------NRIAPAYLFTGPRGTGKTSSARILAKSLNCLNSDKPTPEPCGKCELC 81 (620)
T ss_pred HhCCCcHhhccChHHHHHHHHHHHHc-------CCCCceEEEECCCCCChHHHHHHHHHHhcCCCcCCCCCCCCcccHHH
Confidence 57788899999999999998776642 2222479999999999999999999998652110 0111
Q ss_pred ---------CC---CCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCC
Q 010366 303 ---------DV---APLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS 367 (512)
Q Consensus 303 ---------~~---~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~ 367 (512)
++ ..........++.++..+... .++.||||||+|.| + ...++.||..+++.+
T Consensus 82 ~~i~~g~h~D~~ei~~~~~~~vd~IReii~~a~~~p~~~~~KViIIDEad~L---------t---~~a~naLLK~LEePp 149 (620)
T PRK14948 82 RAIAAGNALDVIEIDAASNTGVDNIRELIERAQFAPVQARWKVYVIDECHML---------S---TAAFNALLKTLEEPP 149 (620)
T ss_pred HHHhcCCCccEEEEeccccCCHHHHHHHHHHHhhChhcCCceEEEEECcccc---------C---HHHHHHHHHHHhcCC
Confidence 00 001123345667776665432 34579999999987 2 345678888888888
Q ss_pred CCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHH
Q 010366 368 KDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 447 (512)
Q Consensus 368 ~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
..++||++|+.+..+.+.+++|+ ..+.|..++.++....+...+.+... .++++.
T Consensus 150 ~~tvfIL~t~~~~~llpTIrSRc-~~~~f~~l~~~ei~~~L~~ia~kegi------------------------~is~~a 204 (620)
T PRK14948 150 PRVVFVLATTDPQRVLPTIISRC-QRFDFRRIPLEAMVQHLSEIAEKESI------------------------EIEPEA 204 (620)
T ss_pred cCeEEEEEeCChhhhhHHHHhhe-eEEEecCCCHHHHHHHHHHHHHHhCC------------------------CCCHHH
Confidence 89999999998999999999999 88999999999888888777765322 277888
Q ss_pred HHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 010366 448 LMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 490 (512)
Q Consensus 448 l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~a 490 (512)
+..++..+.| +.+++..++..... + . ..||.+++++.
T Consensus 205 l~~La~~s~G-~lr~A~~lLeklsL--~-~--~~It~e~V~~l 241 (620)
T PRK14948 205 LTLVAQRSQG-GLRDAESLLDQLSL--L-P--GPITPEAVWDL 241 (620)
T ss_pred HHHHHHHcCC-CHHHHHHHHHHHHh--c-c--CCCCHHHHHHH
Confidence 9999999876 45666666543322 1 1 24666666543
No 128
>PRK08727 hypothetical protein; Validated
Probab=99.70 E-value=1.1e-15 Score=148.31 Aligned_cols=210 Identities=17% Similarity=0.203 Sum_probs=135.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
..+..+|+++++.+... +..+..... +.....++|+||||||||+++.+++..+ +....+++..++.
T Consensus 12 ~~~~~~f~~f~~~~~n~--~~~~~~~~~-----~~~~~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~~~~~~--- 81 (233)
T PRK08727 12 YPSDQRFDSYIAAPDGL--LAQLQALAA-----GQSSDWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLPLQAAA--- 81 (233)
T ss_pred CCCcCChhhccCCcHHH--HHHHHHHHh-----ccCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEeHHHhh---
Confidence 34566799999877642 222111111 1122359999999999999999997664 4566666653322
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeC-CCCC---CCH
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN-RPGD---LDS 384 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN-~~~~---l~~ 384 (512)
..+...++.. ....+|+|||++.+.... .....+..++....+ .+..+|+|+| .|.. ++|
T Consensus 82 ----~~~~~~~~~l---~~~dlLiIDDi~~l~~~~-------~~~~~lf~l~n~~~~--~~~~vI~ts~~~p~~l~~~~~ 145 (233)
T PRK08727 82 ----GRLRDALEAL---EGRSLVALDGLESIAGQR-------EDEVALFDFHNRARA--AGITLLYTARQMPDGLALVLP 145 (233)
T ss_pred ----hhHHHHHHHH---hcCCEEEEeCcccccCCh-------HHHHHHHHHHHHHHH--cCCeEEEECCCChhhhhhhhH
Confidence 2222333333 336799999999874322 223344455554422 2334555555 4554 479
Q ss_pred HHHccc--cceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~R~--~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
.+.||| ..++.|++|+.+++..|++.++..... .++++.++.|+..+.| +.+.
T Consensus 146 dL~SRl~~~~~~~l~~~~~e~~~~iL~~~a~~~~l------------------------~l~~e~~~~La~~~~r-d~r~ 200 (233)
T PRK08727 146 DLRSRLAQCIRIGLPVLDDVARAAVLRERAQRRGL------------------------ALDEAAIDWLLTHGER-ELAG 200 (233)
T ss_pred HHHHHHhcCceEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhCCC-CHHH
Confidence 999996 478899999999999999987765321 2899999999999865 5555
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 463 I~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
+..++..+...+... ...||.+.+.+++..
T Consensus 201 ~l~~L~~l~~~~~~~-~~~it~~~~~~~l~~ 230 (233)
T PRK08727 201 LVALLDRLDRESLAA-KRRVTVPFLRRVLEE 230 (233)
T ss_pred HHHHHHHHHHHHHHh-CCCCCHHHHHHHHhh
Confidence 555565554323322 357999999988753
No 129
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=99.70 E-value=3.1e-16 Score=145.53 Aligned_cols=197 Identities=23% Similarity=0.323 Sum_probs=147.9
Q ss_pred hhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-C----CCeEEEeCCCC
Q 010366 230 LASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-G----LDYALMTGGDV 304 (512)
Q Consensus 230 ~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-~----~~~~~v~~~~~ 304 (512)
..++.|..+.++||+++.++.+.-+. ..++.| +++|.||||||||+.+.++|+++ | -.+..+|.++-
T Consensus 18 VeKYrP~~l~dIVGNe~tv~rl~via------~~gnmP--~liisGpPG~GKTTsi~~LAr~LLG~~~ke~vLELNASde 89 (333)
T KOG0991|consen 18 VEKYRPSVLQDIVGNEDTVERLSVIA------KEGNMP--NLIISGPPGTGKTTSILCLARELLGDSYKEAVLELNASDE 89 (333)
T ss_pred HHhhCchHHHHhhCCHHHHHHHHHHH------HcCCCC--ceEeeCCCCCchhhHHHHHHHHHhChhhhhHhhhccCccc
Confidence 34677888999999999999997765 455666 89999999999999999999986 3 23567777764
Q ss_pred CCCchhHHHHHHHHHHHHHhcCCC---cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC
Q 010366 305 APLGPQAVTKIHQLFDWAKKSKRG---LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 381 (512)
Q Consensus 305 ~~~~~~~~~~l~~lf~~a~~~~~~---~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~ 381 (512)
. |.+..++-.+.|.+-+-.-|| .||+|||+|++ ....++.+...+.. ++..+.|.++||....
T Consensus 90 R--GIDvVRn~IK~FAQ~kv~lp~grhKIiILDEADSM---------T~gAQQAlRRtMEi---yS~ttRFalaCN~s~K 155 (333)
T KOG0991|consen 90 R--GIDVVRNKIKMFAQKKVTLPPGRHKIIILDEADSM---------TAGAQQALRRTMEI---YSNTTRFALACNQSEK 155 (333)
T ss_pred c--ccHHHHHHHHHHHHhhccCCCCceeEEEeeccchh---------hhHHHHHHHHHHHH---Hcccchhhhhhcchhh
Confidence 4 444555555566555544444 49999999996 33445555555544 4667889999999999
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+-..+.||| .++.|...+..+...-+......... .++++.++.+.-..+|
T Consensus 156 IiEPIQSRC-AiLRysklsd~qiL~Rl~~v~k~Ekv------------------------~yt~dgLeaiifta~G---- 206 (333)
T KOG0991|consen 156 IIEPIQSRC-AILRYSKLSDQQILKRLLEVAKAEKV------------------------NYTDDGLEAIIFTAQG---- 206 (333)
T ss_pred hhhhHHhhh-HhhhhcccCHHHHHHHHHHHHHHhCC------------------------CCCcchHHHhhhhccc----
Confidence 999999999 88899999888766555544433222 2889999999887777
Q ss_pred HHHHHHHHHHHHHhCC
Q 010366 462 EIAKLMASVQAAVYGS 477 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~ 477 (512)
|+++.++.+|+...+-
T Consensus 207 DMRQalNnLQst~~g~ 222 (333)
T KOG0991|consen 207 DMRQALNNLQSTVNGF 222 (333)
T ss_pred hHHHHHHHHHHHhccc
Confidence 7888888888887654
No 130
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=99.70 E-value=3.2e-16 Score=165.39 Aligned_cols=223 Identities=14% Similarity=0.186 Sum_probs=145.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~ 306 (512)
..+..+|++++..+........+.....+ ++. +.+++||||||||||+|++++++.+ +..++++++.++..
T Consensus 98 l~~~~tFdnFv~g~~n~~a~~~~~~~~~~---~~~-~n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~~~~f~~ 173 (440)
T PRK14088 98 LNPDYTFENFVVGPGNSFAYHAALEVAKN---PGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFLN 173 (440)
T ss_pred CCCCCcccccccCCchHHHHHHHHHHHhC---cCC-CCeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHH
Confidence 46778999999666665555444433322 222 3469999999999999999999885 35678888765432
Q ss_pred CchhHH--HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee-CCCCC--
Q 010366 307 LGPQAV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-NRPGD-- 381 (512)
Q Consensus 307 ~~~~~~--~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt-N~~~~-- 381 (512)
...... ..+.. |..... ..+.+|+|||++.+.+.. ..+..+..++..+.+. ... +|+|+ ..|..
T Consensus 174 ~~~~~~~~~~~~~-f~~~~~-~~~dvLlIDDi~~l~~~~-------~~q~elf~~~n~l~~~-~k~-iIitsd~~p~~l~ 242 (440)
T PRK14088 174 DLVDSMKEGKLNE-FREKYR-KKVDVLLIDDVQFLIGKT-------GVQTELFHTFNELHDS-GKQ-IVICSDREPQKLS 242 (440)
T ss_pred HHHHHHhcccHHH-HHHHHH-hcCCEEEEechhhhcCcH-------HHHHHHHHHHHHHHHc-CCe-EEEECCCCHHHHH
Confidence 111111 01111 111111 136799999999874322 1222233333333222 233 44454 44543
Q ss_pred -CCHHHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCC
Q 010366 382 -LDSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 458 (512)
Q Consensus 382 -l~~al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 458 (512)
+.+.+.+||. .++.+++|+.+.|..|++..+..... .+++++++.||....|
T Consensus 243 ~l~~rL~SR~~~gl~v~i~~pd~e~r~~IL~~~~~~~~~------------------------~l~~ev~~~Ia~~~~~- 297 (440)
T PRK14088 243 EFQDRLVSRFQMGLVAKLEPPDEETRKKIARKMLEIEHG------------------------ELPEEVLNFVAENVDD- 297 (440)
T ss_pred HHHHHHhhHHhcCceEeeCCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHhcccc-
Confidence 5678888983 57899999999999999988765321 2899999999999876
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 459 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 459 s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
+.|+|..++..+.+.+...+ ..||.+.+.+++....
T Consensus 298 ~~R~L~g~l~~l~~~~~~~~-~~it~~~a~~~L~~~~ 333 (440)
T PRK14088 298 NLRRLRGAIIKLLVYKETTG-EEVDLKEAILLLKDFI 333 (440)
T ss_pred CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 78999999977765544332 5799999999888764
No 131
>TIGR00382 clpX endopeptidase Clp ATP-binding regulatory subunit (clpX). A member of the ATP-dependent proteases, ClpX has ATP-dependent chaperone activity and is required for specific ATP-dependent proteolytic activities expressed by ClpPX. The gene is also found to be involved in stress tolerance in Bacillus subtilis and is essential for the efficient acquisition of genes specifying type IA and IB restriction.
Probab=99.69 E-value=8.3e-16 Score=159.08 Aligned_cols=221 Identities=18% Similarity=0.242 Sum_probs=142.0
Q ss_pred CccccChHHHHHHHHHH-HHhhchhh---cC------CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC--
Q 010366 239 GDVILHPSLQKRIRQLS-GATANTKA---HN------APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-- 306 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~-~~~~~~~~---~~------~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-- 306 (512)
+.|||++++++.+...+ +....... .. .+..++||+||||||||++|+++|..++.||..+++..+..
T Consensus 77 ~~ViGQe~A~~~l~~av~~h~~~~~~~~~~~~~~~~~~~~~~iLL~GP~GsGKT~lAraLA~~l~~pf~~~da~~L~~~g 156 (413)
T TIGR00382 77 EYVIGQEQAKKVLSVAVYNHYKRLNFEKNKKSDNGVELSKSNILLIGPTGSGKTLLAQTLARILNVPFAIADATTLTEAG 156 (413)
T ss_pred ceecCHHHHHHHHHHHHHHHHhhhccccccccccccccCCceEEEECCCCcCHHHHHHHHHHhcCCCeEEechhhccccc
Confidence 56899999999986543 22222111 01 12358999999999999999999999999999999877653
Q ss_pred Cchh-HHHHHHHHHHHH---HhcCCCcEEEEccchhhhhhcccCCC-----CHHHHHHHHHHHHHcC----------CCC
Q 010366 307 LGPQ-AVTKIHQLFDWA---KKSKRGLLLFIDEADAFLCERNKTYM-----SEAQRSALNALLFRTG----------DQS 367 (512)
Q Consensus 307 ~~~~-~~~~l~~lf~~a---~~~~~~~vl~lDEid~l~~~~~~~~~-----~~~~~~~l~~ll~~~~----------~~~ 367 (512)
+.+. ....+..++..+ .....++||||||+|++..++.+... ....+..|..+|...- -+.
T Consensus 157 yvG~d~e~~L~~~~~~~~~~l~~a~~gIV~lDEIdkl~~~~~~~s~~~dvsg~~vq~~LL~iLeG~~~~v~~~~gr~~~~ 236 (413)
T TIGR00382 157 YVGEDVENILLKLLQAADYDVEKAQKGIIYIDEIDKISRKSENPSITRDVSGEGVQQALLKIIEGTVANVPPQGGRKHPY 236 (413)
T ss_pred cccccHHHHHHHHHHhCcccHHhcccceEEecccchhchhhccccccccccchhHHHHHHHHhhccceecccCCCccccC
Confidence 2222 223333333211 11223679999999999875433211 1234445555553210 023
Q ss_pred CCEEEEEeeCCC---------------------------C-----------------------CCCHHHHccccceeecC
Q 010366 368 KDIVLALATNRP---------------------------G-----------------------DLDSAVADRIDEVLEFP 397 (512)
Q Consensus 368 ~~viiI~ttN~~---------------------------~-----------------------~l~~al~~R~~~~i~~~ 397 (512)
.++++|+|+|.. . .+.|+|+.|++.++.|.
T Consensus 237 ~~~i~i~TsNilfi~~Gaf~g~~~i~~~r~~~~~~gf~~~~~~~~~~~~~~~~~~~~~dl~~~g~~PEflgRld~Iv~f~ 316 (413)
T TIGR00382 237 QEFIQIDTSNILFICGGAFVGLEKIIKKRTGKSSIGFGAEVKKKSKEKADLLRQVEPEDLVKFGLIPEFIGRLPVIATLE 316 (413)
T ss_pred CCeEEEEcCCceeeecccccChHHHHHHHhhhccccccccccccchhhHHHHHHHHHHHHHHHhhHHHHhCCCCeEeecC
Confidence 467888888861 0 14589999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH--cCCCcHHHHHHHHHHH
Q 010366 398 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK--TEGFSGREIAKLMASV 470 (512)
Q Consensus 398 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~g~s~~dI~~lv~~~ 470 (512)
+++.+++.+|+....+....+ +.++++.. ++.+ .+++++++.||.. ...+.+|.|+.++...
T Consensus 317 pL~~~~L~~Il~~~~n~l~kq--------~~~~l~~~--gi~L-~~t~~a~~~Ia~~~~~~~~GAR~Lr~iie~~ 380 (413)
T TIGR00382 317 KLDEEALIAILTKPKNALVKQ--------YQALFKMD--NVEL-DFEEEALKAIAKKALERKTGARGLRSIVEGL 380 (413)
T ss_pred CCCHHHHHHHHHHHHHHHHHH--------HHHHhccC--CeEE-EECHHHHHHHHHhCCCCCCCchHHHHHHHHh
Confidence 999999999998764443221 11111111 2222 3899999999987 3456679999988433
No 132
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=99.68 E-value=3.9e-16 Score=171.96 Aligned_cols=306 Identities=18% Similarity=0.177 Sum_probs=189.4
Q ss_pred hhhhHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHhHHHHHHhhHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhHHHH
Q 010366 37 RHVYKFDWHLLQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAHE 116 (512)
Q Consensus 37 ~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 116 (512)
..|+.++|+..+.+++..+++++.+ +.-+++.. .+-..-+....++++..|..++..+++........++... +..
T Consensus 419 ~wL~~~~~~~~~~~~e~~~L~kk~d-~~~h~r~~--~~~~~~~~~~~~~l~~~~~~~~s~~~~l~~~~~~~~~~~~-~~k 494 (898)
T KOG1051|consen 419 PWLQNLERVDIKLQDEISELQKKWN-QALHKRPS--LESLAPSKPTQQPLSASVDSERSVIEELKLKKNSLDRNSL-LAK 494 (898)
T ss_pred HHHHhhhhhhhhhHHHHHHHHHhhh-hhhccccc--cccccccccccccchhhhccchhHHhhhccccCCcccchh-hhc
Confidence 4577778888888888888877765 11121111 1111223335556666776666666666555555555444 555
Q ss_pred HHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHh
Q 010366 117 AKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRIL 196 (512)
Q Consensus 117 ~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l 196 (512)
.++..|...+ .+.++..++ +.... . + .+... ++..+...+..++
T Consensus 495 ~~r~~d~~~~------~~l~~~~~p-~~~~~----~---~--~~~~~--------------------~~~~i~~~~s~~t 538 (898)
T KOG1051|consen 495 AHRPNDYTRE------TDLRYGRIP-DELSE----K---S--NDNQG--------------------GESDISEVVSRWT 538 (898)
T ss_pred ccCCCCcchh------hhccccccc-hhhhh----h---c--ccccC--------------------Cccchhhhhhhhc
Confidence 5666665554 344444443 00000 0 0 00000 1234444555556
Q ss_pred CCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhh-chhhcCCCCcceEEec
Q 010366 197 GQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATA-NTKAHNAPFRNMLFYG 275 (512)
Q Consensus 197 ~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~-~~~~~~~p~~~vLL~G 275 (512)
|.|.. ..-......|..|...+ -+.|+||+++...|...+...+ ...++ .|...++|.|
T Consensus 539 gip~~------------~~~~~e~~~l~~L~~~L-------~~~V~gQ~eAv~aIa~AI~~sr~gl~~~-~~~awflflG 598 (898)
T KOG1051|consen 539 GIPVD------------RLAEAEAERLKKLEERL-------HERVIGQDEAVAAIAAAIRRSRAGLKDP-NPDAWFLFLG 598 (898)
T ss_pred CCchh------------hhhhhHHHHHHHHHHHH-------HhhccchHHHHHHHHHHHHhhhcccCCC-CCCeEEEEEC
Confidence 65542 11122223333333332 4899999999999977555443 34443 5778999999
Q ss_pred CCCCchHHHHHHHHHHhC---CCeEEEeCCCC--------CCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcc
Q 010366 276 PPGTGKTMAARELARKSG---LDYALMTGGDV--------APLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERN 344 (512)
Q Consensus 276 ppGtGKT~lA~alA~~l~---~~~~~v~~~~~--------~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~ 344 (512)
|+|+|||-+|++||..+. ..++.++++.+ .+.+.-+.+....+++ +.+.+|++||+|||||+
T Consensus 599 pdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~evskligsp~gyvG~e~gg~Lte-avrrrP~sVVLfdeIEk------ 671 (898)
T KOG1051|consen 599 PDGVGKTELAKALAEYVFGSEENFIRLDMSEFQEVSKLIGSPPGYVGKEEGGQLTE-AVKRRPYSVVLFEEIEK------ 671 (898)
T ss_pred CCchhHHHHHHHHHHHHcCCccceEEechhhhhhhhhccCCCcccccchhHHHHHH-HHhcCCceEEEEechhh------
Confidence 999999999999999973 56889988863 2222222333444444 44557799999999999
Q ss_pred cCCCCHHHHHHHHHHHHHcCC-----------CCCCEEEEEeeCC-----------------------------------
Q 010366 345 KTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNR----------------------------------- 378 (512)
Q Consensus 345 ~~~~~~~~~~~l~~ll~~~~~-----------~~~~viiI~ttN~----------------------------------- 378 (512)
++..+++.|++.+++ ..+|++||||+|.
T Consensus 672 ------Ah~~v~n~llq~lD~GrltDs~Gr~Vd~kN~I~IMTsn~~~~~i~~~~~~~~~l~~~~~~~~~~~~~k~~v~~~ 745 (898)
T KOG1051|consen 672 ------AHPDVLNILLQLLDRGRLTDSHGREVDFKNAIFIMTSNVGSSAIANDASLEEKLLDMDEKRGSYRLKKVQVSDA 745 (898)
T ss_pred ------cCHHHHHHHHHHHhcCccccCCCcEeeccceEEEEecccchHhhhcccccccccccchhhhhhhhhhhhhhhhh
Confidence 667777777776653 4568999999875
Q ss_pred -C----CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHH
Q 010366 379 -P----GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 415 (512)
Q Consensus 379 -~----~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~ 415 (512)
. ..+.|+|++|++..+.|.+.+.++..+|....+...
T Consensus 746 ~~~~~~~~~r~Ef~nrid~i~lf~~l~~~~~~~i~~~~~~e~ 787 (898)
T KOG1051|consen 746 VRIYNKQFFRKEFLNRIDELDLNLPLDRDELIEIVNKQLTEI 787 (898)
T ss_pred hhcccccccChHHhcccceeeeecccchhhHhhhhhhHHHHH
Confidence 1 234577888999999999999999888888887654
No 133
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=99.68 E-value=6.4e-16 Score=148.36 Aligned_cols=204 Identities=17% Similarity=0.271 Sum_probs=123.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAPL 307 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~~ 307 (512)
.+..+|+++|..+.....+..+.....+ ++.....++||||+|+|||+|.+++++++ +..++++++.++...
T Consensus 2 n~~~tFdnfv~g~~N~~a~~~~~~ia~~---~~~~~~~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~~~f~~~ 78 (219)
T PF00308_consen 2 NPKYTFDNFVVGESNELAYAAAKAIAEN---PGERYNPLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSAEEFIRE 78 (219)
T ss_dssp -TT-SCCCS--TTTTHHHHHHHHHHHHS---TTTSSSEEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEHHHHHHH
T ss_pred CCCCccccCCcCCcHHHHHHHHHHHHhc---CCCCCCceEEECCCCCCHHHHHHHHHHHHHhccccccceeecHHHHHHH
Confidence 3567899998666555555433332222 22233459999999999999999998874 456788876554321
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC---CCCH
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---DLDS 384 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~---~l~~ 384 (512)
....... ..+-..........+|+|||++.+..+. ..+..+..+++.+... +..+||++...|. .+++
T Consensus 79 ~~~~~~~-~~~~~~~~~~~~~DlL~iDDi~~l~~~~-------~~q~~lf~l~n~~~~~-~k~li~ts~~~P~~l~~~~~ 149 (219)
T PF00308_consen 79 FADALRD-GEIEEFKDRLRSADLLIIDDIQFLAGKQ-------RTQEELFHLFNRLIES-GKQLILTSDRPPSELSGLLP 149 (219)
T ss_dssp HHHHHHT-TSHHHHHHHHCTSSEEEEETGGGGTTHH-------HHHHHHHHHHHHHHHT-TSEEEEEESS-TTTTTTS-H
T ss_pred HHHHHHc-ccchhhhhhhhcCCEEEEecchhhcCch-------HHHHHHHHHHHHHHhh-CCeEEEEeCCCCccccccCh
Confidence 1111000 0011111223447899999999985432 2345555555555323 2333444434444 4678
Q ss_pred HHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
.+.+||. .++.+.+|+.++|..|++..+...... +++++++.|+....+ +.++
T Consensus 150 ~L~SRl~~Gl~~~l~~pd~~~r~~il~~~a~~~~~~------------------------l~~~v~~~l~~~~~~-~~r~ 204 (219)
T PF00308_consen 150 DLRSRLSWGLVVELQPPDDEDRRRILQKKAKERGIE------------------------LPEEVIEYLARRFRR-DVRE 204 (219)
T ss_dssp HHHHHHHCSEEEEE----HHHHHHHHHHHHHHTT--------------------------S-HHHHHHHHHHTTS-SHHH
T ss_pred hhhhhHhhcchhhcCCCCHHHHHHHHHHHHHHhCCC------------------------CcHHHHHHHHHhhcC-CHHH
Confidence 9999985 578999999999999999999875543 899999999999866 7888
Q ss_pred HHHHHHHHHHH
Q 010366 463 IAKLMASVQAA 473 (512)
Q Consensus 463 I~~lv~~~~aa 473 (512)
|..++..+.+.
T Consensus 205 L~~~l~~l~~~ 215 (219)
T PF00308_consen 205 LEGALNRLDAY 215 (219)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 88888665543
No 134
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=99.68 E-value=3e-15 Score=163.31 Aligned_cols=207 Identities=19% Similarity=0.250 Sum_probs=149.6
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------- 295 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------- 295 (512)
.++.+.+|++|||++.++..+...+. .+..+..+|||||+|+|||++|+.+|..+.+.
T Consensus 9 ~kyRP~~f~~viGq~~~~~~L~~~i~-------~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~c~~~~~~~~~Cg~C~sC 81 (614)
T PRK14971 9 RKYRPSTFESVVGQEALTTTLKNAIA-------TNKLAHAYLFCGPRGVGKTTCARIFAKTINCQNLTADGEACNECESC 81 (614)
T ss_pred HHHCCCCHHHhcCcHHHHHHHHHHHH-------cCCCCeeEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCCCcchHH
Confidence 36788899999999999998876653 23344569999999999999999999987532
Q ss_pred ----------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH
Q 010366 296 ----------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 362 (512)
Q Consensus 296 ----------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 362 (512)
++.+++.. ..+...++.+...+... ..+-|++|||+|.+. ....+.|+..
T Consensus 82 ~~~~~~~~~n~~~ld~~~-----~~~vd~Ir~li~~~~~~P~~~~~KVvIIdea~~Ls------------~~a~naLLK~ 144 (614)
T PRK14971 82 VAFNEQRSYNIHELDAAS-----NNSVDDIRNLIEQVRIPPQIGKYKIYIIDEVHMLS------------QAAFNAFLKT 144 (614)
T ss_pred HHHhcCCCCceEEecccc-----cCCHHHHHHHHHHHhhCcccCCcEEEEEECcccCC------------HHHHHHHHHH
Confidence 22222211 12234556666555422 235699999999972 2457788888
Q ss_pred cCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcC
Q 010366 363 TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKG 442 (512)
Q Consensus 363 ~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 442 (512)
+++.+..++||++|+.+..+-+.+++|+ .++.|.+++.++....+...+......
T Consensus 145 LEepp~~tifIL~tt~~~kIl~tI~SRc-~iv~f~~ls~~ei~~~L~~ia~~egi~------------------------ 199 (614)
T PRK14971 145 LEEPPSYAIFILATTEKHKILPTILSRC-QIFDFNRIQVADIVNHLQYVASKEGIT------------------------ 199 (614)
T ss_pred HhCCCCCeEEEEEeCCchhchHHHHhhh-heeecCCCCHHHHHHHHHHHHHHcCCC------------------------
Confidence 8888888999999988899999999999 889999999999999998887764322
Q ss_pred CCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 443 LTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 443 ~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++++.+..|+..+.| +.+++..++..+.. +..+ .||.+++.+.+
T Consensus 200 i~~~al~~La~~s~g-dlr~al~~Lekl~~--y~~~--~It~~~V~~~l 243 (614)
T PRK14971 200 AEPEALNVIAQKADG-GMRDALSIFDQVVS--FTGG--NITYKSVIENL 243 (614)
T ss_pred CCHHHHHHHHHHcCC-CHHHHHHHHHHHHH--hccC--CccHHHHHHHh
Confidence 788899999999855 66666666543322 2221 16665555443
No 135
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=99.67 E-value=6.1e-15 Score=151.29 Aligned_cols=225 Identities=18% Similarity=0.272 Sum_probs=160.7
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC-----eEEEeCCCCCC-------
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD-----YALMTGGDVAP------- 306 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~-----~~~v~~~~~~~------- 306 (512)
+.+.+.++...++..++ ...-.++.| .++++|||||||||.+++.+++++..+ ++++||-.+..
T Consensus 17 ~~l~~Re~ei~~l~~~l---~~~~~~~~p-~n~~iyG~~GTGKT~~~~~v~~~l~~~~~~~~~~yINc~~~~t~~~i~~~ 92 (366)
T COG1474 17 EELPHREEEINQLASFL---APALRGERP-SNIIIYGPTGTGKTATVKFVMEELEESSANVEVVYINCLELRTPYQVLSK 92 (366)
T ss_pred ccccccHHHHHHHHHHH---HHHhcCCCC-ccEEEECCCCCCHhHHHHHHHHHHHhhhccCceEEEeeeeCCCHHHHHHH
Confidence 44667777777775553 333333444 479999999999999999999988543 89999877533
Q ss_pred ----------CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee
Q 010366 307 ----------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT 376 (512)
Q Consensus 307 ----------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt 376 (512)
.|....+.+..+++.........||+|||+|.|....+ .++..|+........++.+|+.+
T Consensus 93 i~~~~~~~p~~g~~~~~~~~~l~~~~~~~~~~~IvvLDEid~L~~~~~---------~~LY~L~r~~~~~~~~v~vi~i~ 163 (366)
T COG1474 93 ILNKLGKVPLTGDSSLEILKRLYDNLSKKGKTVIVILDEVDALVDKDG---------EVLYSLLRAPGENKVKVSIIAVS 163 (366)
T ss_pred HHHHcCCCCCCCCchHHHHHHHHHHHHhcCCeEEEEEcchhhhccccc---------hHHHHHHhhccccceeEEEEEEe
Confidence 23334444555666666556678999999999865432 57777777766566778899988
Q ss_pred CCC---CCCCHHHHcccc-ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHH
Q 010366 377 NRP---GDLDSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAA 452 (512)
Q Consensus 377 N~~---~~l~~al~~R~~-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 452 (512)
|.. ..++|.+.+++. ..|.||+++.+|...|+..+.+..... ..+++..++.+|
T Consensus 164 n~~~~~~~ld~rv~s~l~~~~I~F~pY~a~el~~Il~~R~~~~~~~----------------------~~~~~~vl~lia 221 (366)
T COG1474 164 NDDKFLDYLDPRVKSSLGPSEIVFPPYTAEELYDILRERVEEGFSA----------------------GVIDDDVLKLIA 221 (366)
T ss_pred ccHHHHHHhhhhhhhccCcceeeeCCCCHHHHHHHHHHHHHhhccC----------------------CCcCccHHHHHH
Confidence 875 478999999774 558999999999999999998865433 237888888888
Q ss_pred HHcCCC--cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 453 AKTEGF--SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 453 ~~t~g~--s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
...... +.|--..++..+...+.......++.+++..|.+..-...
T Consensus 222 ~~~a~~~GDAR~aidilr~A~eiAe~~~~~~v~~~~v~~a~~~~~~~~ 269 (366)
T COG1474 222 ALVAAESGDARKAIDILRRAGEIAEREGSRKVSEDHVREAQEEIERDV 269 (366)
T ss_pred HHHHHcCccHHHHHHHHHHHHHHHHhhCCCCcCHHHHHHHHHHhhHHH
Confidence 665333 3444444556555566666679999999999955544443
No 136
>TIGR00390 hslU ATP-dependent protease HslVU, ATPase subunit. This model represents the ATPase subunit of HslVU, while the proteasome-related peptidase subunit is HslV. Residues 54-61 of the model contain a P-loop ATP-binding motif. Cys-287 of E. coli (position 308 in the seed alignment), studied in PubMed:98389714, is Ser in other members of the seed alignment.
Probab=99.67 E-value=2.2e-15 Score=153.85 Aligned_cols=243 Identities=19% Similarity=0.289 Sum_probs=157.2
Q ss_pred CccccChHHHHHHHHHHHHh-hchh-----hcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC--C-ch
Q 010366 239 GDVILHPSLQKRIRQLSGAT-ANTK-----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--L-GP 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~-~~~~-----~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~--~-~~ 309 (512)
+.|||++++++.+...+... .... ....+|+++||+||||||||++|++||..++.||+.+++..+.. + +.
T Consensus 12 ~~IiGQ~eAkk~lsvAl~n~~~r~~~~~~~~~e~~p~~ILLiGppG~GKT~lAraLA~~l~~~fi~vdat~~~e~g~vG~ 91 (441)
T TIGR00390 12 KYIIGQDNAKKSVAIALRNRYRRSQLNEELKDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 91 (441)
T ss_pred hhccCHHHHHHHHHHHHHhhhhhhccccccccccCCceEEEECCCCCCHHHHHHHHHHHhCCeEEEeecceeecCCcccC
Confidence 56899999999996544321 1111 11235589999999999999999999999999999999876642 3 22
Q ss_pred hHHHHHHHHHHHH-------------------------------------------------------------------
Q 010366 310 QAVTKIHQLFDWA------------------------------------------------------------------- 322 (512)
Q Consensus 310 ~~~~~l~~lf~~a------------------------------------------------------------------- 322 (512)
+....++.+|..+
T Consensus 92 dvE~i~r~l~e~A~~~i~~d~i~~~r~~a~~~ae~riv~~Ll~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 171 (441)
T TIGR00390 92 DVESMVRDLTDAAVKLVKEEAIEKVRDRAEELAEERIVDVLLPPAKNQWGQTEQQQEPESAREAFRKKLREGELDDKEIE 171 (441)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHhcCCccccccccccccchHHHHHHHHHHHhcCCccCcEEE
Confidence 3444444444433
Q ss_pred ----------------------------------------------------------------------H-hcCCCcEE
Q 010366 323 ----------------------------------------------------------------------K-KSKRGLLL 331 (512)
Q Consensus 323 ----------------------------------------------------------------------~-~~~~~~vl 331 (512)
. .....+||
T Consensus 172 i~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ea~~~l~~~e~~~lid~~~v~~~a~~~~e~~GIV 251 (441)
T TIGR00390 172 IDVSAKMPSGIEIMAPPGMEEMTMQLQSLFQNLGGQKKKKRKLKIKDAKKALIAEEAAKLVDPEEIKQEAIDAVEQSGII 251 (441)
T ss_pred EeecCCCCCccccCCCcchhHHHhhHHHHHHhhcCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEE
Confidence 0 00135699
Q ss_pred EEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC----------CCCCEEEEEee----CCCCCCCHHHHccccceeecC
Q 010366 332 FIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 332 ~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~viiI~tt----N~~~~l~~al~~R~~~~i~~~ 397 (512)
||||||+++.+..+......-..+...||..++. ...+++||++. ..|+.+-|+|..||+.++.+.
T Consensus 252 fiDEiDKIa~~~~~~~~DvS~eGVQ~~LLkilEGt~v~~k~~~v~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~ 331 (441)
T TIGR00390 252 FIDEIDKIAKKGESSGADVSREGVQRDLLPIVEGSTVNTKYGMVKTDHILFIAAGAFQLAKPSDLIPELQGRFPIRVELQ 331 (441)
T ss_pred EEEchhhhcccCCCCCCCCCccchhccccccccCceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECC
Confidence 9999999987653221111111233344443321 34678888864 347788999999999999999
Q ss_pred CCCHHHHHHHHH----HHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc-------CCCcHHHHHHH
Q 010366 398 LPGQEERFKLLK----LYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-------EGFSGREIAKL 466 (512)
Q Consensus 398 ~p~~~er~~Il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~g~s~~dI~~l 466 (512)
+++.++...||. ..+.++. .+++.+...+. ++++++..||... .+.-.|-|..+
T Consensus 332 ~L~~edL~rILteP~nsLikQy~------------~Lf~~egv~L~---Ftd~Al~~IA~~A~~~N~~~~~iGAR~Lrti 396 (441)
T TIGR00390 332 ALTTDDFERILTEPKNSLIKQYK------------ALMKTEGVNIE---FSDEAIKRIAELAYNVNEKTENIGARRLHTV 396 (441)
T ss_pred CCCHHHHHHHhcCChhHHHHHHH------------HHHhhcCcEEE---EeHHHHHHHHHHHHHhcccccccchhhHHHH
Confidence 999999999983 3333332 12332222232 7888999988874 45556778888
Q ss_pred HHHHH-HHHhCCC-----CCccCHHHHHHHHHHHHH
Q 010366 467 MASVQ-AAVYGSE-----NCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 467 v~~~~-aa~~~~~-----~~~it~e~~~~al~~~~~ 496 (512)
+..+. .+.+... ...||.+.+...+.....
T Consensus 397 lE~~l~d~~fe~p~~~~~~v~I~~~~V~~~l~~~~~ 432 (441)
T TIGR00390 397 LERLLEDISFEAPDLSGQNITIDADYVSKKLGALVA 432 (441)
T ss_pred HHHHHHHHHhcCCCCCCCEEEECHHHHHhHHHHHHh
Confidence 74333 3333222 246888888877766543
No 137
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=99.67 E-value=1.7e-15 Score=160.07 Aligned_cols=225 Identities=12% Similarity=0.193 Sum_probs=148.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCCCch
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAPLGP 309 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~~~~ 309 (512)
..+|++++..+....++..+.... ..++.+.++++||||+|||||+|++++++.+ +..++++++.++.....
T Consensus 111 ~~tFdnFv~g~~n~~A~~aa~~~a---~~~~~~~npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~~~f~~~~~ 187 (450)
T PRK14087 111 ENTFENFVIGSSNEQAFIAVQTVS---KNPGISYNPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSGDEFARKAV 187 (450)
T ss_pred ccchhcccCCCcHHHHHHHHHHHH---hCcCcccCceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEHHHHHHHHH
Confidence 478999986665544443332222 2223344579999999999999999999865 35677888766543211
Q ss_pred hHHHHH-HHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-C---CCCH
Q 010366 310 QAVTKI-HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-G---DLDS 384 (512)
Q Consensus 310 ~~~~~l-~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-~---~l~~ 384 (512)
...... ..+...........+|+|||++.+..+ ......|..+++...+... .+|+|+|.+ . .+++
T Consensus 188 ~~l~~~~~~~~~~~~~~~~~dvLiIDDiq~l~~k-------~~~~e~lf~l~N~~~~~~k--~iIltsd~~P~~l~~l~~ 258 (450)
T PRK14087 188 DILQKTHKEIEQFKNEICQNDVLIIDDVQFLSYK-------EKTNEIFFTIFNNFIENDK--QLFFSSDKSPELLNGFDN 258 (450)
T ss_pred HHHHHhhhHHHHHHHHhccCCEEEEeccccccCC-------HHHHHHHHHHHHHHHHcCC--cEEEECCCCHHHHhhccH
Confidence 111110 111112222344679999999987432 2334445555554432222 456666653 2 4678
Q ss_pred HHHccc--cceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVADRI--DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~R~--~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
.+.+|| +.++.+.+|+.+++.+|++..+...... ..+++++++.|+..+.| ++|.
T Consensus 259 rL~SR~~~Gl~~~L~~pd~e~r~~iL~~~~~~~gl~----------------------~~l~~evl~~Ia~~~~g-d~R~ 315 (450)
T PRK14087 259 RLITRFNMGLSIAIQKLDNKTATAIIKKEIKNQNIK----------------------QEVTEEAINFISNYYSD-DVRK 315 (450)
T ss_pred HHHHHHhCCceeccCCcCHHHHHHHHHHHHHhcCCC----------------------CCCCHHHHHHHHHccCC-CHHH
Confidence 999999 4688999999999999999998753210 13899999999999977 8999
Q ss_pred HHHHHHHHHHHHhCCC-CCccCHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGSE-NCVLDPSLFREVVDYK 494 (512)
Q Consensus 463 I~~lv~~~~aa~~~~~-~~~it~e~~~~al~~~ 494 (512)
+..++..+...+.... ...||.+.+.+++...
T Consensus 316 L~gaL~~l~~~a~~~~~~~~it~~~v~~~l~~~ 348 (450)
T PRK14087 316 IKGSVSRLNFWSQQNPEEKIITIEIVSDLFRDI 348 (450)
T ss_pred HHHHHHHHHHHHhcccCCCCCCHHHHHHHHhhc
Confidence 9999977765554432 2679999999988764
No 138
>PRK05201 hslU ATP-dependent protease ATP-binding subunit HslU; Provisional
Probab=99.67 E-value=1.8e-15 Score=154.64 Aligned_cols=243 Identities=19% Similarity=0.278 Sum_probs=158.0
Q ss_pred CccccChHHHHHHHHHHHHh-hch-----hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC--Cch-
Q 010366 239 GDVILHPSLQKRIRQLSGAT-ANT-----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGP- 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~-~~~-----~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~--~~~- 309 (512)
..|+|++.+++.+...+... +.. .....++.++||+||||||||++|++||..++.||+.++++.+.. +.+
T Consensus 15 ~~IiGQe~AkkalavAl~~~~~r~~l~~~~~~e~~~~~ILliGp~G~GKT~LAr~LAk~l~~~fi~vD~t~f~e~GyvG~ 94 (443)
T PRK05201 15 KYIIGQDDAKRAVAIALRNRWRRMQLPEELRDEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGR 94 (443)
T ss_pred cccCCHHHHHHHHHHHHHHHHHHhcCCcccccccCCceEEEECCCCCCHHHHHHHHHHHhCChheeecchhhccCCcccC
Confidence 56999999999996655321 111 111123579999999999999999999999999999999876653 322
Q ss_pred hHHHHHHHHHHHHH------------------------------------------------------------------
Q 010366 310 QAVTKIHQLFDWAK------------------------------------------------------------------ 323 (512)
Q Consensus 310 ~~~~~l~~lf~~a~------------------------------------------------------------------ 323 (512)
+....++.+|..|.
T Consensus 95 d~e~~ir~L~~~A~~~~~~~~~~~~~~~a~~~~e~ri~~~l~~~~~~~~~~~~~~~~~~~~r~~~~~~l~~g~ldd~~ie 174 (443)
T PRK05201 95 DVESIIRDLVEIAVKMVREEKREKVREKAEEAAEERILDALLPPAKNNWGEEEEKEEISATRQKFRKKLREGELDDKEIE 174 (443)
T ss_pred CHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhCCCccCCccccccchhhhHHHHHHHHHHHcCCcCCcEEE
Confidence 33444444444440
Q ss_pred ----------------------------------------------------------------------h-cCCCcEEE
Q 010366 324 ----------------------------------------------------------------------K-SKRGLLLF 332 (512)
Q Consensus 324 ----------------------------------------------------------------------~-~~~~~vl~ 332 (512)
. ....+|||
T Consensus 175 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~eA~~~l~~~e~~~lid~~~v~~~ai~~ae~~GIVf 254 (443)
T PRK05201 175 IEVAEAAPMMEIMGPPGMEEMTIQLQDMFGNLGPKKKKKRKLKVKEARKILIEEEAAKLIDMEEIKQEAIERVEQNGIVF 254 (443)
T ss_pred EEecCCCCcccCCCCcchhHHHHHHHHHHHhhCCCCCceEEeEHHHHHHHHHHHHHHhccChHHHHHHHHHHHHcCCEEE
Confidence 0 01346999
Q ss_pred EccchhhhhhcccCCCCHHHHHHHHHHHHHcCC----------CCCCEEEEEee----CCCCCCCHHHHccccceeecCC
Q 010366 333 IDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVLEFPL 398 (512)
Q Consensus 333 lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~viiI~tt----N~~~~l~~al~~R~~~~i~~~~ 398 (512)
|||||+++.+.++.+....-..+...||..++. ...+++||++. ..|+.+-|+|..||+.++.+.+
T Consensus 255 iDEiDKIa~~~~~~~~DvS~eGVQ~~LLki~EG~~v~~k~~~i~T~~ILFI~~GAF~~~kp~DlIPEl~GR~Pi~v~L~~ 334 (443)
T PRK05201 255 IDEIDKIAARGGSSGPDVSREGVQRDLLPLVEGSTVSTKYGMVKTDHILFIASGAFHVSKPSDLIPELQGRFPIRVELDA 334 (443)
T ss_pred EEcchhhcccCCCCCCCCCccchhcccccccccceeeecceeEECCceeEEecCCcCCCChhhccHHHhCccceEEECCC
Confidence 999999987653221111112233344443321 44678888863 3477788999999999999999
Q ss_pred CCHHHHHHHHH----HHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc-------CCCcHHHHHHHH
Q 010366 399 PGQEERFKLLK----LYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-------EGFSGREIAKLM 467 (512)
Q Consensus 399 p~~~er~~Il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~g~s~~dI~~lv 467 (512)
++.++...||. ..+.++.. +++.+...+. ++++++..||... .+.-.|-|..++
T Consensus 335 L~~~dL~~ILteP~nsLikQy~~------------Lf~~egv~L~---Ftd~Al~~IA~~A~~~N~~~~~iGAR~LrtI~ 399 (443)
T PRK05201 335 LTEEDFVRILTEPKASLIKQYQA------------LLATEGVTLE---FTDDAIRRIAEIAYQVNEKTENIGARRLHTVM 399 (443)
T ss_pred CCHHHHHHHhcCChhHHHHHHHH------------HHhhcCcEEE---EcHHHHHHHHHHHHHhcccccccchhhHHHHH
Confidence 99999999983 34444322 2222222222 7899999998874 355567888888
Q ss_pred HHHH-HHHhCCC-----CCccCHHHHHHHHHHHHH
Q 010366 468 ASVQ-AAVYGSE-----NCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 468 ~~~~-aa~~~~~-----~~~it~e~~~~al~~~~~ 496 (512)
..+. .+.+... ...||.+.+...+.....
T Consensus 400 E~~L~d~~Fe~p~~~~~~v~I~~~~V~~~l~~l~~ 434 (443)
T PRK05201 400 EKLLEDISFEAPDMSGETVTIDAAYVDEKLGDLVK 434 (443)
T ss_pred HHHHHHHhccCCCCCCCEEEECHHHHHHHHHHHHh
Confidence 4433 3333222 246888888777765543
No 139
>COG1224 TIP49 DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.66 E-value=1.3e-14 Score=142.54 Aligned_cols=133 Identities=19% Similarity=0.170 Sum_probs=101.5
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC------------CCCCCHHHHccccceee
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------PGDLDSAVADRIDEVLE 395 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~------------~~~l~~al~~R~~~~i~ 395 (512)
|+||||||++.| . -..|..|-..+++...++ ||++||+ |..++..+++|+ .+|.
T Consensus 292 pGVLFIDEvHmL---------D---IE~FsFlnrAlEse~aPI-ii~AtNRG~~kiRGTd~~sPhGIP~DlLDRl-lII~ 357 (450)
T COG1224 292 PGVLFIDEVHML---------D---IECFSFLNRALESELAPI-IILATNRGMTKIRGTDIESPHGIPLDLLDRL-LIIS 357 (450)
T ss_pred cceEEEechhhh---------h---HHHHHHHHHHhhcccCcE-EEEEcCCceeeecccCCcCCCCCCHhhhhhe-eEEe
Confidence 569999999886 2 223333333444455554 6667775 778999999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 010366 396 FPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 396 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~ 475 (512)
..+++.++.+.|++..+...... +++++++.|+.....-|-|--.+|+.-+...+.
T Consensus 358 t~py~~~EireIi~iRa~ee~i~------------------------l~~~Ale~L~~ig~etSLRYa~qLL~pa~iiA~ 413 (450)
T COG1224 358 TRPYSREEIREIIRIRAKEEDIE------------------------LSDDALEYLTDIGEETSLRYAVQLLTPASIIAK 413 (450)
T ss_pred cCCCCHHHHHHHHHHhhhhhccc------------------------cCHHHHHHHHhhchhhhHHHHHHhccHHHHHHH
Confidence 99999999999999998775433 899999999988776677777777765655665
Q ss_pred CCCCCccCHHHHHHHHHHHHHHH
Q 010366 476 GSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 476 ~~~~~~it~e~~~~al~~~~~~~ 498 (512)
..+...+..+|+++|.+.+....
T Consensus 414 ~rg~~~V~~~dVe~a~~lF~D~k 436 (450)
T COG1224 414 RRGSKRVEVEDVERAKELFLDVK 436 (450)
T ss_pred HhCCCeeehhHHHHHHHHHhhHH
Confidence 56668999999999998877653
No 140
>PRK10865 protein disaggregation chaperone; Provisional
Probab=99.66 E-value=1.6e-15 Score=171.78 Aligned_cols=170 Identities=19% Similarity=0.236 Sum_probs=127.6
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 302 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~ 302 (512)
..+..++.+||.++...++..++... ...+++|+||||||||++|+.+|..+ +.+++.++.+
T Consensus 172 ~r~~~l~~vigr~~ei~~~i~iL~r~--------~~~n~lL~G~pGvGKT~l~~~la~~i~~~~vp~~l~~~~~~~l~l~ 243 (857)
T PRK10865 172 AEQGKLDPVIGRDEEIRRTIQVLQRR--------TKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 243 (857)
T ss_pred HhcCCCCcCCCCHHHHHHHHHHHhcC--------CcCceEEECCCCCCHHHHHHHHHHHhhcCCCchhhCCCEEEEEehh
Confidence 34566899999999777765554211 12379999999999999999999987 5678888776
Q ss_pred CCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 303 DVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 303 ~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.+. .+.++.+..+..+|..+.....++||||||++.+.+.....+ +......|...+ ..+.+.+|++|+..
T Consensus 244 ~l~ag~~~~g~~e~~lk~~~~~~~~~~~~~ILfIDEih~l~~~~~~~~-~~d~~~~lkp~l-----~~g~l~~IgaTt~~ 317 (857)
T PRK10865 244 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL-----ARGELHCVGATTLD 317 (857)
T ss_pred hhhhccchhhhhHHHHHHHHHHHHHcCCCeEEEEecHHHhccCCCCcc-chhHHHHhcchh-----hcCCCeEEEcCCCH
Confidence 643 255677788999998876655678999999999986654332 222333443333 45678999999887
Q ss_pred C-----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhh
Q 010366 380 G-----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIA 417 (512)
Q Consensus 380 ~-----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~ 417 (512)
+ .+|+++.+||+ .|.++.|+.+++..|++.....+..
T Consensus 318 e~r~~~~~d~al~rRf~-~i~v~eP~~~~~~~iL~~l~~~~e~ 359 (857)
T PRK10865 318 EYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAILRGLKERYEL 359 (857)
T ss_pred HHHHHhhhcHHHHhhCC-EEEeCCCCHHHHHHHHHHHhhhhcc
Confidence 6 48999999994 6889999999999999887766543
No 141
>CHL00095 clpC Clp protease ATP binding subunit
Probab=99.64 E-value=1.3e-14 Score=164.57 Aligned_cols=191 Identities=20% Similarity=0.252 Sum_probs=141.2
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCCC
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 303 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~~ 303 (512)
....++.++|.+.....+..++.. ...++++|+||||||||++|+.+|..+ +.+++.++.+.
T Consensus 174 ~~~~~~~~igr~~ei~~~~~~L~r--------~~~~n~lL~G~pGvGKTal~~~la~~i~~~~vp~~l~~~~i~~l~~~~ 245 (821)
T CHL00095 174 IDGNLDPVIGREKEIERVIQILGR--------RTKNNPILIGEPGVGKTAIAEGLAQRIVNRDVPDILEDKLVITLDIGL 245 (821)
T ss_pred HcCCCCCCCCcHHHHHHHHHHHcc--------cccCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeHHH
Confidence 344589999999999998776531 233489999999999999999999986 36788888765
Q ss_pred CC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC
Q 010366 304 VA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 380 (512)
Q Consensus 304 ~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~ 380 (512)
+. .+.++.+..+..+++.+... .++||||||++.|++.....+ +......|...+ ..+.+.+|++|+..+
T Consensus 246 l~ag~~~~ge~e~rl~~i~~~~~~~-~~~ILfiDEih~l~~~g~~~g-~~~~a~lLkp~l-----~rg~l~~IgaTt~~e 318 (821)
T CHL00095 246 LLAGTKYRGEFEERLKRIFDEIQEN-NNIILVIDEVHTLIGAGAAEG-AIDAANILKPAL-----ARGELQCIGATTLDE 318 (821)
T ss_pred HhccCCCccHHHHHHHHHHHHHHhc-CCeEEEEecHHHHhcCCCCCC-cccHHHHhHHHH-----hCCCcEEEEeCCHHH
Confidence 53 35677888999999998764 478999999999987654332 112233333333 356788999988754
Q ss_pred -----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc
Q 010366 381 -----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 455 (512)
Q Consensus 381 -----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 455 (512)
..++++.+|| ..|.++.|+.++...|++.....+.... .+ .++++.+..++..+
T Consensus 319 y~~~ie~D~aL~rRf-~~I~v~ep~~~e~~aILr~l~~~~e~~~-------------------~v-~i~deal~~i~~ls 377 (821)
T CHL00095 319 YRKHIEKDPALERRF-QPVYVGEPSVEETIEILFGLRSRYEKHH-------------------NL-SISDKALEAAAKLS 377 (821)
T ss_pred HHHHHhcCHHHHhcc-eEEecCCCCHHHHHHHHHHHHHHHHHHc-------------------CC-CCCHHHHHHHHHHh
Confidence 4789999999 6789999999999999988766543221 11 17888888888887
Q ss_pred CCCcH
Q 010366 456 EGFSG 460 (512)
Q Consensus 456 ~g~s~ 460 (512)
.+|.+
T Consensus 378 ~~yi~ 382 (821)
T CHL00095 378 DQYIA 382 (821)
T ss_pred hccCc
Confidence 76544
No 142
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=99.64 E-value=2.2e-14 Score=163.06 Aligned_cols=191 Identities=20% Similarity=0.241 Sum_probs=136.0
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 302 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~ 302 (512)
..+..++.+||.++....+..++.. ....+++|+||||||||++|+.+|..+ +.+++.++.+
T Consensus 167 ~~~~~~~~~igr~~ei~~~~~~l~r--------~~~~n~lL~G~pGvGKT~l~~~la~~i~~~~~p~~l~~~~~~~l~~~ 238 (852)
T TIGR03346 167 AREGKLDPVIGRDEEIRRTIQVLSR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIVNGDVPESLKNKRLLALDMG 238 (852)
T ss_pred hhCCCCCcCCCcHHHHHHHHHHHhc--------CCCCceEEEcCCCCCHHHHHHHHHHHHhccCCchhhcCCeEEEeeHH
Confidence 4556789999999977776555421 122478999999999999999999886 5667777765
Q ss_pred CCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 303 DVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 303 ~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.+. .+.++....+..++..+.....++||||||++.|++.....+ +. ...+.|...+ ..+.+.+|++|+..
T Consensus 239 ~l~a~~~~~g~~e~~l~~~l~~~~~~~~~~ILfIDEih~l~~~g~~~~-~~---d~~~~Lk~~l--~~g~i~~IgaTt~~ 312 (852)
T TIGR03346 239 ALIAGAKYRGEFEERLKAVLNEVTKSEGQIILFIDELHTLVGAGKAEG-AM---DAGNMLKPAL--ARGELHCIGATTLD 312 (852)
T ss_pred HHhhcchhhhhHHHHHHHHHHHHHhcCCCeEEEeccHHHhhcCCCCcc-hh---HHHHHhchhh--hcCceEEEEeCcHH
Confidence 542 355667778899999887655689999999999976443322 11 2223332222 45678999998876
Q ss_pred C-----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH
Q 010366 380 G-----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 454 (512)
Q Consensus 380 ~-----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 454 (512)
+ .+|+++.+|| ..|.++.|+.+++..|++.....+...... .++++.+..++..
T Consensus 313 e~r~~~~~d~al~rRf-~~i~v~~p~~~~~~~iL~~~~~~~e~~~~v--------------------~~~d~~i~~~~~l 371 (852)
T TIGR03346 313 EYRKYIEKDAALERRF-QPVFVDEPTVEDTISILRGLKERYEVHHGV--------------------RITDPAIVAAATL 371 (852)
T ss_pred HHHHHhhcCHHHHhcC-CEEEeCCCCHHHHHHHHHHHHHHhccccCC--------------------CCCHHHHHHHHHh
Confidence 3 5799999999 578999999999999999887766433221 1566666666666
Q ss_pred cCCC
Q 010366 455 TEGF 458 (512)
Q Consensus 455 t~g~ 458 (512)
+.+|
T Consensus 372 s~~y 375 (852)
T TIGR03346 372 SHRY 375 (852)
T ss_pred cccc
Confidence 5544
No 143
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=99.62 E-value=1.7e-14 Score=147.81 Aligned_cols=228 Identities=18% Similarity=0.274 Sum_probs=150.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC-----CCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v~~~~~~~ 306 (512)
..+..+|+++|..+....+.......... ++.+...++||||+|+|||||++++++... ..+++++...+..
T Consensus 80 l~~~ytFdnFv~g~~N~~A~aa~~~va~~---~g~~~nplfi~G~~GlGKTHLl~Aign~~~~~~~~a~v~y~~se~f~~ 156 (408)
T COG0593 80 LNPKYTFDNFVVGPSNRLAYAAAKAVAEN---PGGAYNPLFIYGGVGLGKTHLLQAIGNEALANGPNARVVYLTSEDFTN 156 (408)
T ss_pred CCCCCchhheeeCCchHHHHHHHHHHHhc---cCCcCCcEEEECCCCCCHHHHHHHHHHHHHhhCCCceEEeccHHHHHH
Confidence 57788999999988877776544433333 333455699999999999999999988763 2466665544322
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeC-CCC---CC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN-RPG---DL 382 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN-~~~---~l 382 (512)
........ ...-+.-... ...+++|||++.+.++... ..+.-..+|.+. . .++ .||+|+. .|. .+
T Consensus 157 ~~v~a~~~-~~~~~Fk~~y-~~dlllIDDiq~l~gk~~~---qeefFh~FN~l~----~-~~k-qIvltsdr~P~~l~~~ 225 (408)
T COG0593 157 DFVKALRD-NEMEKFKEKY-SLDLLLIDDIQFLAGKERT---QEEFFHTFNALL----E-NGK-QIVLTSDRPPKELNGL 225 (408)
T ss_pred HHHHHHHh-hhHHHHHHhh-ccCeeeechHhHhcCChhH---HHHHHHHHHHHH----h-cCC-EEEEEcCCCchhhccc
Confidence 11000000 0011111112 3569999999998655332 123334444444 2 223 4555554 444 45
Q ss_pred CHHHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH
Q 010366 383 DSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 460 (512)
Q Consensus 383 ~~al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~ 460 (512)
.|.+.|||. .++.+.+|+.+.|..|+...+...... ++++++..+|..... +.
T Consensus 226 ~~rL~SR~~~Gl~~~I~~Pd~e~r~aiL~kka~~~~~~------------------------i~~ev~~~la~~~~~-nv 280 (408)
T COG0593 226 EDRLRSRLEWGLVVEIEPPDDETRLAILRKKAEDRGIE------------------------IPDEVLEFLAKRLDR-NV 280 (408)
T ss_pred cHHHHHHHhceeEEeeCCCCHHHHHHHHHHHHHhcCCC------------------------CCHHHHHHHHHHhhc-cH
Confidence 699999995 677999999999999999977664332 899999999999765 77
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~ 499 (512)
+++..++..+.+.+...+ ..||.+.+.+++........
T Consensus 281 ReLegaL~~l~~~a~~~~-~~iTi~~v~e~L~~~~~~~~ 318 (408)
T COG0593 281 RELEGALNRLDAFALFTK-RAITIDLVKEILKDLLRAGE 318 (408)
T ss_pred HHHHHHHHHHHHHHHhcC-ccCcHHHHHHHHHHhhcccc
Confidence 888888866666555443 48999999999988765433
No 144
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=99.62 E-value=6.2e-14 Score=138.46 Aligned_cols=131 Identities=20% Similarity=0.237 Sum_probs=92.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC---Cchh-----HHHHHH-------------------HHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LGPQ-----AVTKIH-------------------QLFDWA 322 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~---~~~~-----~~~~l~-------------------~lf~~a 322 (512)
++||+||||||||++|+++|..+|.+++.++|..-.. ..+. ...... ..+..|
T Consensus 23 ~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~~~~~~~dllg~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~l~~A 102 (262)
T TIGR02640 23 PVHLRGPAGTGKTTLAMHVARKRDRPVMLINGDAELTTSDLVGSYAGYTRKKVHDQFIHNVVKLEDIVRQNWVDNRLTLA 102 (262)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCCccCCHHHHhhhhcccchhhHHHHHHHHhhhhhcccceeecCchHHHH
Confidence 5999999999999999999999999999998865321 1000 000000 011112
Q ss_pred HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----C---------CCCCEEEEEeeCCCC-----CCCH
Q 010366 323 KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----D---------QSKDIVLALATNRPG-----DLDS 384 (512)
Q Consensus 323 ~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~---------~~~~viiI~ttN~~~-----~l~~ 384 (512)
. ..+.+|+|||++.+ +...+..|..++..-. + ...++.||+|+|... .+++
T Consensus 103 ~--~~g~~lllDEi~r~---------~~~~q~~Ll~~Le~~~~~i~~~~~~~~~i~~~~~frvIaTsN~~~~~g~~~l~~ 171 (262)
T TIGR02640 103 V--REGFTLVYDEFTRS---------KPETNNVLLSVFEEGVLELPGKRGTSRYVDVHPEFRVIFTSNPVEYAGVHETQD 171 (262)
T ss_pred H--HcCCEEEEcchhhC---------CHHHHHHHHHHhcCCeEEccCCCCCCceEecCCCCEEEEeeCCccccceecccH
Confidence 2 23579999999995 4455666666664310 0 123678999999753 5689
Q ss_pred HHHccccceeecCCCCHHHHHHHHHHHH
Q 010366 385 AVADRIDEVLEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 385 al~~R~~~~i~~~~p~~~er~~Il~~~l 412 (512)
++.+|| ..+.++.|+.++-.+|+...+
T Consensus 172 aL~~R~-~~i~i~~P~~~~e~~Il~~~~ 198 (262)
T TIGR02640 172 ALLDRL-ITIFMDYPDIDTETAILRAKT 198 (262)
T ss_pred HHHhhc-EEEECCCCCHHHHHHHHHHhh
Confidence 999999 889999999999999998764
No 145
>PRK09087 hypothetical protein; Validated
Probab=99.61 E-value=4.1e-14 Score=136.36 Aligned_cols=204 Identities=16% Similarity=0.141 Sum_probs=132.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhH
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~ 311 (512)
..+..+|+++|..+.....+..+.... +.+.+.++|+||+|||||||+++++...+.. +++...+. .+
T Consensus 14 ~~~~~~~~~Fi~~~~N~~a~~~l~~~~------~~~~~~l~l~G~~GsGKThLl~~~~~~~~~~--~i~~~~~~---~~- 81 (226)
T PRK09087 14 HDPAYGRDDLLVTESNRAAVSLVDHWP------NWPSPVVVLAGPVGSGKTHLASIWREKSDAL--LIHPNEIG---SD- 81 (226)
T ss_pred CCCCCChhceeecCchHHHHHHHHhcc------cCCCCeEEEECCCCCCHHHHHHHHHHhcCCE--EecHHHcc---hH-
Confidence 455668999997554444444222111 1222349999999999999999999876544 33332211 11
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC---CCCHHHHc
Q 010366 312 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---DLDSAVAD 388 (512)
Q Consensus 312 ~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~---~l~~al~~ 388 (512)
.+.... ..+|+|||++.+.. .+..+..+++...+. +..+||+++..|. ...+.+.+
T Consensus 82 ------~~~~~~----~~~l~iDDi~~~~~----------~~~~lf~l~n~~~~~-g~~ilits~~~p~~~~~~~~dL~S 140 (226)
T PRK09087 82 ------AANAAA----EGPVLIEDIDAGGF----------DETGLFHLINSVRQA-GTSLLMTSRLWPSSWNVKLPDLKS 140 (226)
T ss_pred ------HHHhhh----cCeEEEECCCCCCC----------CHHHHHHHHHHHHhC-CCeEEEECCCChHHhccccccHHH
Confidence 111111 24889999997521 112233444333222 3344444444443 23688999
Q ss_pred ccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHH
Q 010366 389 RID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKL 466 (512)
Q Consensus 389 R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~l 466 (512)
||. .++.+.+|+.+++..+++..+..... .+++++++.|+....| +.+.+..+
T Consensus 141 Rl~~gl~~~l~~pd~e~~~~iL~~~~~~~~~------------------------~l~~ev~~~La~~~~r-~~~~l~~~ 195 (226)
T PRK09087 141 RLKAATVVEIGEPDDALLSQVIFKLFADRQL------------------------YVDPHVVYYLVSRMER-SLFAAQTI 195 (226)
T ss_pred HHhCCceeecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHhhh-hHHHHHHH
Confidence 985 88999999999999999999977432 2899999999999875 66777777
Q ss_pred HHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 467 MASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 467 v~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
+..+...+...+ ..||...++++++..
T Consensus 196 l~~L~~~~~~~~-~~it~~~~~~~l~~~ 222 (226)
T PRK09087 196 VDRLDRLALERK-SRITRALAAEVLNEM 222 (226)
T ss_pred HHHHHHHHHHhC-CCCCHHHHHHHHHhh
Confidence 766655554433 679999999999764
No 146
>TIGR02903 spore_lon_C ATP-dependent protease, Lon family. Members of this protein family resemble the widely distributed ATP-dependent protease La, also called Lon and LonA. It resembles even more closely LonB, which is a LonA paralog found in genomes if and only if the species is capable of endospore formation (as in Bacillus subtilis, Clostridium tetani, and select other members of the Firmicutes) and expressed specifically in the forespore compartment. Members of this family are restricted to a subset of spore-forming species, and are very likely to participate in the program of endospore formation. We propose the designation LonC.
Probab=99.60 E-value=3.7e-13 Score=147.45 Aligned_cols=218 Identities=19% Similarity=0.214 Sum_probs=138.1
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCCC
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGD 303 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~~ 303 (512)
.+.+|++++|++.....+...+ .. ..+.+++|+||||||||++|+.++... +.+|+.++|..
T Consensus 149 rp~~~~~iiGqs~~~~~l~~~i---a~-----~~~~~vlL~Gp~GtGKTTLAr~i~~~~~~~~~~~~~~~~~fv~i~~~~ 220 (615)
T TIGR02903 149 RPRAFSEIVGQERAIKALLAKV---AS-----PFPQHIILYGPPGVGKTTAARLALEEAKKLKHTPFAEDAPFVEVDGTT 220 (615)
T ss_pred CcCcHHhceeCcHHHHHHHHHH---hc-----CCCCeEEEECCCCCCHHHHHHHHHHhhhhccCCcccCCCCeEEEechh
Confidence 4566899999999888764332 11 112479999999999999999997655 35789999876
Q ss_pred CCCCchhH--------HH----HHHHHHHHH---------HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH
Q 010366 304 VAPLGPQA--------VT----KIHQLFDWA---------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 362 (512)
Q Consensus 304 ~~~~~~~~--------~~----~l~~lf~~a---------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 362 (512)
+....... .. .....+... .....+++|||||++.| +...+..+..++..
T Consensus 221 l~~d~~~i~~~llg~~~~~~~~~a~~~l~~~gl~~~~~g~v~~asgGvL~LDEi~~L---------d~~~Q~~Ll~~Le~ 291 (615)
T TIGR02903 221 LRWDPREVTNPLLGSVHDPIYQGARRDLAETGVPEPKTGLVTDAHGGVLFIDEIGEL---------DPLLQNKLLKVLED 291 (615)
T ss_pred ccCCHHHHhHHhcCCccHHHHHHHHHHHHHcCCCchhcCchhhcCCCeEEEeccccC---------CHHHHHHHHHHHhh
Confidence 53110000 00 000000000 00113679999999987 44555555555543
Q ss_pred cC-------------------------CCCCCEEEEE-eeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHh
Q 010366 363 TG-------------------------DQSKDIVLAL-ATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYI 416 (512)
Q Consensus 363 ~~-------------------------~~~~~viiI~-ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~ 416 (512)
-. ....++++|+ ||+.+..+++++.+|| ..+.|++++.+++..|++..+....
T Consensus 292 ~~v~~~~~~~~~~~~~~~~~ik~~~~~~~~~~~VLI~aTt~~~~~l~~aLrSR~-~~i~~~pls~edi~~Il~~~a~~~~ 370 (615)
T TIGR02903 292 KRVEFSSSYYDPDDPNVPKYIKKLFEEGAPADFVLIGATTRDPEEINPALRSRC-AEVFFEPLTPEDIALIVLNAAEKIN 370 (615)
T ss_pred CeEEeecceeccCCcccchhhhhhcccCccceEEEEEeccccccccCHHHHhce-eEEEeCCCCHHHHHHHHHHHHHHcC
Confidence 10 0122356665 4566888999999999 5779999999999999999876532
Q ss_pred hhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHH-HHHHHHH-------hCCCCCccCHHHHH
Q 010366 417 AQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM-ASVQAAV-------YGSENCVLDPSLFR 488 (512)
Q Consensus 417 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv-~~~~aa~-------~~~~~~~it~e~~~ 488 (512)
. .++++.++.|+.++. .++....++ .+...+. .......|+.+++.
T Consensus 371 v------------------------~ls~eal~~L~~ys~--~gRraln~L~~~~~~~~~~~~~~~~~~~~~~I~~edv~ 424 (615)
T TIGR02903 371 V------------------------HLAAGVEELIARYTI--EGRKAVNILADVYGYALYRAAEAGKENDKVTITQDDVY 424 (615)
T ss_pred C------------------------CCCHHHHHHHHHCCC--cHHHHHHHHHHHHHHHHHHHHHhccCCCCeeECHHHHH
Confidence 1 278889999998875 343333333 2221111 11122479999999
Q ss_pred HHHHHHH
Q 010366 489 EVVDYKV 495 (512)
Q Consensus 489 ~al~~~~ 495 (512)
+++..-.
T Consensus 425 ~~l~~~r 431 (615)
T TIGR02903 425 EVIQISR 431 (615)
T ss_pred HHhCCCc
Confidence 9997654
No 147
>PRK13407 bchI magnesium chelatase subunit I; Provisional
Probab=99.58 E-value=9.9e-14 Score=140.44 Aligned_cols=245 Identities=15% Similarity=0.138 Sum_probs=143.9
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC-------CCeEE--EeC-CCC
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-------LDYAL--MTG-GDV 304 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-------~~~~~--v~~-~~~ 304 (512)
+..|.+++|++.++..+.-.. . . ....|+||+||||||||++|++++..+. +++-. +.+ .+.
T Consensus 4 ~~~f~~i~Gq~~~~~~l~~~~--~----~--~~~~~vLl~G~pG~gKT~lar~la~llP~~~~~e~~~~~~~~~~~~~~~ 75 (334)
T PRK13407 4 PFPFSAIVGQEEMKQAMVLTA--I----D--PGIGGVLVFGDRGTGKSTAVRALAALLPLIKAVEGCPVNSARPEDCPEW 75 (334)
T ss_pred CCCHHHhCCHHHHHHHHHHHH--h----c--cCCCcEEEEcCCCCCHHHHHHHHHHHCCCcchhcccccccCcccCCccc
Confidence 456999999999998874321 0 0 1124899999999999999999999883 22111 110 000
Q ss_pred ------------------CC-------CchhH-HHHH-HH--HHHHH-HhcCCCcEEEEccchhhhhhcccCCCCHHHHH
Q 010366 305 ------------------AP-------LGPQA-VTKI-HQ--LFDWA-KKSKRGLLLFIDEADAFLCERNKTYMSEAQRS 354 (512)
Q Consensus 305 ------------------~~-------~~~~~-~~~l-~~--lf~~a-~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~ 354 (512)
+. .|+.. ...+ .. .|..- .....+++|||||++.+ +...+.
T Consensus 76 ~~~~~~~~~~~~~p~~~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~l~~A~~GiL~lDEInrl---------~~~~q~ 146 (334)
T PRK13407 76 AHVSSTTMIERPTPVVDLPLGVTEDRVVGALDIERALTRGEKAFEPGLLARANRGYLYIDEVNLL---------EDHIVD 146 (334)
T ss_pred ccccCCcccccCCccccCCCCCCcceeecchhhhhhhhcCCeeecCCceEEcCCCeEEecChHhC---------CHHHHH
Confidence 00 01000 0000 00 01000 00112469999999996 445555
Q ss_pred HHHHHHHHcC----------CCCCCEEEEEeeCCCC-CCCHHHHccccceeecCCCCH-HHHHHHHHHHHHHHhhhhC--
Q 010366 355 ALNALLFRTG----------DQSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAG-- 420 (512)
Q Consensus 355 ~l~~ll~~~~----------~~~~~viiI~ttN~~~-~l~~al~~R~~~~i~~~~p~~-~er~~Il~~~l~~~~~~~~-- 420 (512)
.|...++.-. ..+..+++|+|+|..+ .+.+++++||...+.+++|.. +++.+|+......-.....
T Consensus 147 ~Lle~mee~~v~v~r~G~~~~~p~rfiviAt~NP~e~~l~~aLldRF~~~v~v~~~~~~~e~~~il~~~~~~~~~~~~~~ 226 (334)
T PRK13407 147 LLLDVAQSGENVVEREGLSIRHPARFVLVGSGNPEEGELRPQLLDRFGLSVEVRSPRDVETRVEVIRRRDAYDADHDAFM 226 (334)
T ss_pred HHHHHHHcCCeEEEECCeEEecCCCEEEEecCCcccCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHhhcccccchhhh
Confidence 5555554311 1345788999999754 689999999999999998877 8999999886431100000
Q ss_pred --C-CCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc---CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 421 --S-RKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT---EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 421 --~-~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t---~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
. ..+......+..-...+.--.++++.+.+++..+ .--|+|.-..++.++++.+.-++...|+.+|+..+....
T Consensus 227 ~~~~~~~~~~~~~i~~a~~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~~aA~a~A~l~Gr~~V~~~Di~~~~~~v 306 (334)
T PRK13407 227 AKWGAEDMQLRGRILGARARLPQLKTPNTVLHDCAALCIALGSDGLRGELTLLRAARALAAFEGAEAVGRSHLRSVATMA 306 (334)
T ss_pred ccccccccCCHHHHHHHHHhcCCcccCHHHHHHHHHHHHHHCCCCchHHHHHHHHHHHHHHHcCCCeeCHHHHHHHHHHh
Confidence 0 0000111111111222222236787777776653 212444444488888888888888999999999888555
Q ss_pred HH
Q 010366 495 VA 496 (512)
Q Consensus 495 ~~ 496 (512)
+.
T Consensus 307 l~ 308 (334)
T PRK13407 307 LS 308 (334)
T ss_pred hh
Confidence 43
No 148
>CHL00081 chlI Mg-protoporyphyrin IX chelatase
Probab=99.58 E-value=1.7e-13 Score=139.09 Aligned_cols=246 Identities=12% Similarity=0.063 Sum_probs=152.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC-------CCeEEE--------
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-------LDYALM-------- 299 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-------~~~~~v-------- 299 (512)
...|.+|||+++++..+.... .+...+++||+||+|||||++|+.++..+. .||...
T Consensus 13 ~~pf~~ivGq~~~k~al~~~~--------~~p~~~~vli~G~~GtGKs~~ar~~~~~l~~~~~~~~~pf~~~p~~p~~~~ 84 (350)
T CHL00081 13 VFPFTAIVGQEEMKLALILNV--------IDPKIGGVMIMGDRGTGKSTTIRALVDLLPEIEVVKDDPFNSHPSDPELMS 84 (350)
T ss_pred CCCHHHHhChHHHHHHHHHhc--------cCCCCCeEEEEcCCCCCHHHHHHHHHHHHhhcCccCCCCCCCCCCChhhhc
Confidence 445999999999999885322 122336899999999999999999987763 223200
Q ss_pred --------------------eCCCCCCCchhHHHHH------HHHHHHHH--------hcCCCcEEEEccchhhhhhccc
Q 010366 300 --------------------TGGDVAPLGPQAVTKI------HQLFDWAK--------KSKRGLLLFIDEADAFLCERNK 345 (512)
Q Consensus 300 --------------------~~~~~~~~~~~~~~~l------~~lf~~a~--------~~~~~~vl~lDEid~l~~~~~~ 345 (512)
++..++ .+.+...+ ...+.... ....+++|||||++.+
T Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~lp--~~~ted~l~G~iD~~~al~~g~~~~~~GlL~~A~~GiL~lDEInrL------ 156 (350)
T CHL00081 85 DEVREAIQNGETIETEKIKIPMVDLP--LGATEDRVCGTIDIEKALTEGVKAFEPGLLAKANRGILYVDEVNLL------ 156 (350)
T ss_pred hhhhhhhcccccccceeccccceecC--CCCchhhccCcccHHHHhhcCcccccCCeeeecCCCEEEecChHhC------
Confidence 000000 00111111 11111110 0122579999999997
Q ss_pred CCCCHHHHHHHHHHHHHc-------C---CCCCCEEEEEeeCCCC-CCCHHHHccccceeecCCCC-HHHHHHHHHHHHH
Q 010366 346 TYMSEAQRSALNALLFRT-------G---DQSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLPG-QEERFKLLKLYLD 413 (512)
Q Consensus 346 ~~~~~~~~~~l~~ll~~~-------~---~~~~~viiI~ttN~~~-~l~~al~~R~~~~i~~~~p~-~~er~~Il~~~l~ 413 (512)
+...+..|...+..- + ..+.++++|+|.|..+ .+.+++++||...+.+..|+ .+.+.+|++....
T Consensus 157 ---~~~~Q~~LLeam~e~~~~ier~G~s~~~p~rfiviaT~np~eg~l~~~LldRf~l~i~l~~~~~~~~e~~il~~~~~ 233 (350)
T CHL00081 157 ---DDHLVDILLDSAASGWNTVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGMHAEIRTVKDPELRVKIVEQRTS 233 (350)
T ss_pred ---CHHHHHHHHHHHHhCCeEEeeCCeeeecCCCEEEEeccCcccCCCCHHHHHHhCceeecCCCCChHHHHHHHHhhhc
Confidence 445566655555431 1 1345688888888755 69999999999999999998 5999999988642
Q ss_pred HHhhhh-----CCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhCCCCCccCHH
Q 010366 414 KYIAQA-----GSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---TEGFSGREIAKLMASVQAAVYGSENCVLDPS 485 (512)
Q Consensus 414 ~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e 485 (512)
...... ...........+..-...+.--.+++..+.+++.. +.--|+|.-..++.++++.+.-.+...++.+
T Consensus 234 ~~~~~~~~~~~~~~~~~~~~~~I~~ar~~~~~V~v~~~~~~yi~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~pd 313 (350)
T CHL00081 234 FDKNPQEFREKYEESQEELRSKIVAAQNLLPKVEIDYDLRVKISQICSELDVDGLRGDIVTNRAAKALAAFEGRTEVTPK 313 (350)
T ss_pred cccChhhhhhhhccccccCHHHHHHHHHhcCCCccCHHHHHHHHHHHHHHCCCCChHHHHHHHHHHHHHHHcCCCCCCHH
Confidence 100000 00000011111111111122223678777777665 3334788888899888888888888999999
Q ss_pred HHHHHHHHHHHHHH
Q 010366 486 LFREVVDYKVAEHQ 499 (512)
Q Consensus 486 ~~~~al~~~~~~~~ 499 (512)
|+..+...++.+..
T Consensus 314 Dv~~~a~~vL~HR~ 327 (350)
T CHL00081 314 DIFKVITLCLRHRL 327 (350)
T ss_pred HHHHHHHHHHHHhC
Confidence 99999988877654
No 149
>COG3829 RocR Transcriptional regulator containing PAS, AAA-type ATPase, and DNA-binding domains [Transcription / Signal transduction mechanisms]
Probab=99.58 E-value=1.7e-14 Score=149.56 Aligned_cols=212 Identities=22% Similarity=0.260 Sum_probs=150.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
....++|+++||.+..+..+...+...+... .+|||+|.+||||..+|+++.+.. +.||+.+||+.++..-
T Consensus 238 ~~a~y~f~~Iig~S~~m~~~~~~akr~A~td------stVLi~GESGTGKElfA~~IH~~S~R~~~PFIaiNCaAiPe~L 311 (560)
T COG3829 238 LKAKYTFDDIIGESPAMLRVLELAKRIAKTD------STVLILGESGTGKELFARAIHNLSPRANGPFIAINCAAIPETL 311 (560)
T ss_pred cccccchhhhccCCHHHHHHHHHHHhhcCCC------CcEEEecCCCccHHHHHHHHHhcCcccCCCeEEEecccCCHHH
Confidence 4567889999999998888877665554333 369999999999999999998765 5899999999987632
Q ss_pred hhH--HHHHHHHHHHHHhc--------CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCE
Q 010366 309 PQA--VTKIHQLFDWAKKS--------KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDI 370 (512)
Q Consensus 309 ~~~--~~~l~~lf~~a~~~--------~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v 370 (512)
-++ +..-...|.-|.+. ..++.||||||..+ +...+..|..+|+.-. ..+.+|
T Consensus 312 lESELFGye~GAFTGA~~~GK~GlfE~A~gGTLFLDEIgem---------pl~LQaKLLRVLQEkei~rvG~t~~~~vDV 382 (560)
T COG3829 312 LESELFGYEKGAFTGASKGGKPGLFELANGGTLFLDEIGEM---------PLPLQAKLLRVLQEKEIERVGGTKPIPVDV 382 (560)
T ss_pred HHHHHhCcCCccccccccCCCCcceeeccCCeEEehhhccC---------CHHHHHHHHHHHhhceEEecCCCCceeeEE
Confidence 221 11222233334332 12579999999986 6788888888888632 244579
Q ss_pred EEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 371 VLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 371 iiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
.||+|||.. ..+...|.=|+ .++.+..|+..+|.+-+......+..+.+. ..+-.++.+
T Consensus 383 RIIAATN~nL~~~i~~G~FReDLYYRL-NV~~i~iPPLReR~eDI~~L~~~Fl~k~s~-------------~~~~~v~~l 448 (560)
T COG3829 383 RIIAATNRNLEKMIAEGTFREDLYYRL-NVIPITIPPLRERKEDIPLLAEYFLDKFSR-------------RYGRNVKGL 448 (560)
T ss_pred EEEeccCcCHHHHHhcCcchhhheeee-ceeeecCCCcccCcchHHHHHHHHHHHHHH-------------HcCCCcccC
Confidence 999999973 45666666688 888888888888877655554443322110 111223458
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQA 472 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~a 472 (512)
+++++..|.++-+..+-|+|++++..+..
T Consensus 449 s~~a~~~L~~y~WPGNVRELeNviER~v~ 477 (560)
T COG3829 449 SPDALALLLRYDWPGNVRELENVIERAVN 477 (560)
T ss_pred CHHHHHHHHhCCCCchHHHHHHHHHHHHh
Confidence 99999999999888899999999965543
No 150
>PF05673 DUF815: Protein of unknown function (DUF815); InterPro: IPR008533 This domain consists of several bacterial proteins of unknown function.
Probab=99.57 E-value=1.8e-13 Score=130.40 Aligned_cols=192 Identities=21% Similarity=0.360 Sum_probs=136.2
Q ss_pred cCCCCCCccccChHHHHHHHH-HHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 233 KNGNGFGDVILHPSLQKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~-~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
..+..+++++|.+..++.|.. ..... .+.|..++||+|++|||||++++++..++ |..++.+...++.
T Consensus 21 ~~~~~l~~L~Gie~Qk~~l~~Nt~~Fl-----~G~pannvLL~G~rGtGKSSlVkall~~y~~~GLRlIev~k~~L~--- 92 (249)
T PF05673_consen 21 PDPIRLDDLIGIERQKEALIENTEQFL-----QGLPANNVLLWGARGTGKSSLVKALLNEYADQGLRLIEVSKEDLG--- 92 (249)
T ss_pred CCCCCHHHhcCHHHHHHHHHHHHHHHH-----cCCCCcceEEecCCCCCHHHHHHHHHHHHhhcCceEEEECHHHhc---
Confidence 345568999999999998843 33322 34567899999999999999999998876 4667777665543
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH-cCCCCCCEEEEEeeCCCCC------
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQSKDIVLALATNRPGD------ 381 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~viiI~ttN~~~~------ 381 (512)
.+..+++.....+..-|||+||+.- ...+..-..|..+|.. +...+.||+|.+|||+.+.
T Consensus 93 -----~l~~l~~~l~~~~~kFIlf~DDLsF--------e~~d~~yk~LKs~LeGgle~~P~NvliyATSNRRHLv~E~~~ 159 (249)
T PF05673_consen 93 -----DLPELLDLLRDRPYKFILFCDDLSF--------EEGDTEYKALKSVLEGGLEARPDNVLIYATSNRRHLVPESFS 159 (249)
T ss_pred -----cHHHHHHHHhcCCCCEEEEecCCCC--------CCCcHHHHHHHHHhcCccccCCCcEEEEEecchhhccchhhh
Confidence 3445666666556678999999752 1123445566677654 3567889999999997322
Q ss_pred ---------CCH--------HHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 382 ---------LDS--------AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 382 ---------l~~--------al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+.+ +|-+||+..+.|.+|+.++-.+|++.++..+... ++
T Consensus 160 d~~~~~~~eih~~d~~eEklSLsDRFGL~l~F~~~~q~~YL~IV~~~~~~~g~~------------------------~~ 215 (249)
T PF05673_consen 160 DREDIQDDEIHPSDTIEEKLSLSDRFGLWLSFYPPDQEEYLAIVRHYAERYGLE------------------------LD 215 (249)
T ss_pred hccCCCccccCcchHHHHHHhHHHhCCcEEEecCCCHHHHHHHHHHHHHHcCCC------------------------CC
Confidence 221 4556999999999999999999999999876543 44
Q ss_pred HHHHHHH----HHHcCCCcHHHHHHHHHH
Q 010366 445 DDILMEA----AAKTEGFSGREIAKLMAS 469 (512)
Q Consensus 445 ~~~l~~l----a~~t~g~s~~dI~~lv~~ 469 (512)
++.+..- |..-.|.|||--.+.+..
T Consensus 216 ~e~l~~~Al~wa~~rg~RSGRtA~QF~~~ 244 (249)
T PF05673_consen 216 EEELRQEALQWALRRGGRSGRTARQFIDD 244 (249)
T ss_pred HHHHHHHHHHHHHHcCCCCHHHHHHHHHH
Confidence 4333332 333457899887777753
No 151
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=1.5e-13 Score=140.46 Aligned_cols=159 Identities=20% Similarity=0.231 Sum_probs=113.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-------CeEEE-eC---
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-------DYALM-TG--- 301 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-------~~~~v-~~--- 301 (512)
..|..|.+++|++.+...+...+. .+..+..+||+||+|+|||++|+.+|+.+.+ +.... .|
T Consensus 17 ~~P~~~~~l~Gh~~a~~~L~~a~~-------~grl~ha~L~~G~~G~GKttlA~~lA~~Llc~~~~~~~~~~~~~~~~~c 89 (351)
T PRK09112 17 PSPSENTRLFGHEEAEAFLAQAYR-------EGKLHHALLFEGPEGIGKATLAFHLANHILSHPDPAEAPETLADPDPAS 89 (351)
T ss_pred CCCCchhhccCcHHHHHHHHHHHH-------cCCCCeeEeeECCCCCCHHHHHHHHHHHHcCCCccccCccccCCCCCCC
Confidence 456678999999999999976653 2334456999999999999999999998754 11100 00
Q ss_pred -----------CCCC----C--C------chhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHH
Q 010366 302 -----------GDVA----P--L------GPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSA 355 (512)
Q Consensus 302 -----------~~~~----~--~------~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 355 (512)
+++. + . ..-+...++.+...... ...+-|++|||+|.+ ....
T Consensus 90 ~~c~~i~~~~hPdl~~l~~~~~~~~~~~~~~I~vd~iR~l~~~l~~~~~~g~~rVviIDeAd~l------------~~~a 157 (351)
T PRK09112 90 PVWRQIAQGAHPNLLHITRPFDEKTGKFKTAITVDEIRRVGHFLSQTSGDGNWRIVIIDPADDM------------NRNA 157 (351)
T ss_pred HHHHHHHcCCCCCEEEeecccccccccccccCCHHHHHHHHHHhhhccccCCceEEEEEchhhc------------CHHH
Confidence 0000 0 0 00112344444433332 334569999999996 2345
Q ss_pred HHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHH
Q 010366 356 LNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLY 411 (512)
Q Consensus 356 l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~ 411 (512)
.|.||..+++.+.++++|+.|+.+..+.|.++||| ..+.|++|+.++...++...
T Consensus 158 anaLLk~LEEpp~~~~fiLit~~~~~llptIrSRc-~~i~l~pl~~~~~~~~L~~~ 212 (351)
T PRK09112 158 ANAILKTLEEPPARALFILISHSSGRLLPTIRSRC-QPISLKPLDDDELKKALSHL 212 (351)
T ss_pred HHHHHHHHhcCCCCceEEEEECChhhccHHHHhhc-cEEEecCCCHHHHHHHHHHh
Confidence 66778778878888899998999999999999999 89999999999999998863
No 152
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=99.57 E-value=1.4e-13 Score=139.53 Aligned_cols=153 Identities=19% Similarity=0.249 Sum_probs=112.8
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC--------CeEEEeCCCCCCCc
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL--------DYALMTGGDVAPLG 308 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~--------~~~~v~~~~~~~~~ 308 (512)
.|++++|++.+++.+...+ ..+..+..+||+||+|+|||++|+.+|..+-+ ++..+...+-.
T Consensus 2 ~~~~i~g~~~~~~~l~~~~-------~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~c~~~~~~h~D~~~~~~~~~~--- 71 (313)
T PRK05564 2 SFHTIIGHENIKNRIKNSI-------IKNRFSHAHIIVGEDGIGKSLLAKEIALKILGKSQQREYVDIIEFKPINKK--- 71 (313)
T ss_pred ChhhccCcHHHHHHHHHHH-------HcCCCCceEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCeEEeccccCC---
Confidence 3899999999999886654 22344457899999999999999999998643 22233221111
Q ss_pred hhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHH
Q 010366 309 PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSA 385 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~a 385 (512)
.-....++.+.+.+.. ...+-|++||++|.+ .....|.|+..+++++.+++||++|+.++.+.|.
T Consensus 72 ~i~v~~ir~~~~~~~~~p~~~~~kv~iI~~ad~m------------~~~a~naLLK~LEepp~~t~~il~~~~~~~ll~T 139 (313)
T PRK05564 72 SIGVDDIRNIIEEVNKKPYEGDKKVIIIYNSEKM------------TEQAQNAFLKTIEEPPKGVFIILLCENLEQILDT 139 (313)
T ss_pred CCCHHHHHHHHHHHhcCcccCCceEEEEechhhc------------CHHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHH
Confidence 1123445555554332 223569999999986 2445678888888889999999999999999999
Q ss_pred HHccccceeecCCCCHHHHHHHHHHHH
Q 010366 386 VADRIDEVLEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 386 l~~R~~~~i~~~~p~~~er~~Il~~~l 412 (512)
+.||+ ..+.|++|+.++....+...+
T Consensus 140 I~SRc-~~~~~~~~~~~~~~~~l~~~~ 165 (313)
T PRK05564 140 IKSRC-QIYKLNRLSKEEIEKFISYKY 165 (313)
T ss_pred HHhhc-eeeeCCCcCHHHHHHHHHHHh
Confidence 99999 799999999999887776554
No 153
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=99.56 E-value=1.7e-13 Score=140.94 Aligned_cols=159 Identities=18% Similarity=0.173 Sum_probs=115.2
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC-----------------
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD----------------- 295 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~----------------- 295 (512)
..|..+++|+|++.+++.+...+. .+..+..+||+||+|+||+++|.++|+.+-+.
T Consensus 13 ~~P~~~~~iiGq~~~~~~L~~~~~-------~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~Llc~~~~~~~~~~~~~~~l~~ 85 (365)
T PRK07471 13 PHPRETTALFGHAAAEAALLDAYR-------SGRLHHAWLIGGPQGIGKATLAYRMARFLLATPPPGGDGAVPPPTSLAI 85 (365)
T ss_pred CCCCchhhccChHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHHhCCCCCCCCccccccccccC
Confidence 456678999999999999976553 23444569999999999999999999987321
Q ss_pred -----------------eEEEeCCCCCCCc-----hhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCH
Q 010366 296 -----------------YALMTGGDVAPLG-----PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSE 350 (512)
Q Consensus 296 -----------------~~~v~~~~~~~~~-----~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~ 350 (512)
++.+... ....+ .-....++.+...+.. ...+.||+|||+|.+
T Consensus 86 ~~~c~~c~~i~~~~HPDl~~i~~~-~~~~~~~~~~~I~VdqiR~l~~~~~~~~~~~~~kVviIDead~m----------- 153 (365)
T PRK07471 86 DPDHPVARRIAAGAHGGLLTLERS-WNEKGKRLRTVITVDEVRELISFFGLTAAEGGWRVVIVDTADEM----------- 153 (365)
T ss_pred CCCChHHHHHHccCCCCeEEEecc-cccccccccccccHHHHHHHHHHhCcCcccCCCEEEEEechHhc-----------
Confidence 1111100 00000 0123445555444332 234679999999986
Q ss_pred HHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHH
Q 010366 351 AQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 351 ~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l 412 (512)
.....|.|+..+++.+.+++||++|+.++.+.|.+.+|+ ..+.|++|+.++...++....
T Consensus 154 -~~~aanaLLK~LEepp~~~~~IL~t~~~~~llpti~SRc-~~i~l~~l~~~~i~~~L~~~~ 213 (365)
T PRK07471 154 -NANAANALLKVLEEPPARSLFLLVSHAPARLLPTIRSRC-RKLRLRPLAPEDVIDALAAAG 213 (365)
T ss_pred -CHHHHHHHHHHHhcCCCCeEEEEEECCchhchHHhhccc-eEEECCCCCHHHHHHHHHHhc
Confidence 345677888888888888999999999999999999999 899999999999998887753
No 154
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=99.54 E-value=6.8e-13 Score=134.64 Aligned_cols=243 Identities=15% Similarity=0.128 Sum_probs=147.8
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-------CCCeE-------------
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-------GLDYA------------- 297 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-------~~~~~------------- 297 (512)
|..|||+++++..+.-.+ + .....+++|.|+||||||+++++++..+ ++++-
T Consensus 3 f~~ivgq~~~~~al~~~~--~------~~~~g~vli~G~~G~gKttl~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 74 (337)
T TIGR02030 3 FTAIVGQDEMKLALLLNV--I------DPKIGGVMVMGDRGTGKSTAVRALAALLPEIKAVAGCPFNSSPSDPEMMCEEV 74 (337)
T ss_pred ccccccHHHHHHHHHHHh--c------CCCCCeEEEEcCCCCCHHHHHHHHHHhhcccccccCCCCCCCCCCccccChHH
Confidence 899999999998873221 1 1113579999999999999999999876 22221
Q ss_pred EE--e-------------CCCCCCCchhHHHHHHHHHHHHH--------------hcCCCcEEEEccchhhhhhcccCCC
Q 010366 298 LM--T-------------GGDVAPLGPQAVTKIHQLFDWAK--------------KSKRGLLLFIDEADAFLCERNKTYM 348 (512)
Q Consensus 298 ~v--~-------------~~~~~~~~~~~~~~l~~lf~~a~--------------~~~~~~vl~lDEid~l~~~~~~~~~ 348 (512)
.. . ..+++. +.+...+....+... ....+++|||||++.+
T Consensus 75 r~~~~~~~~~~~~~~~~~~~~lP~--~~t~d~l~G~~d~~~~l~~g~~~~~~GlL~~A~~GvL~lDEi~~L--------- 143 (337)
T TIGR02030 75 RIRVDSQEPLSIIKKPVPVVDLPL--GATEDRVCGTLDIERALTEGVKAFEPGLLARANRGILYIDEVNLL--------- 143 (337)
T ss_pred hhhhhcccccccccCCCCcCCCCC--CCcccceecchhHhhHhhcCCEEeecCcceeccCCEEEecChHhC---------
Confidence 00 0 011111 000011111111100 0122579999999997
Q ss_pred CHHHHHHHHHHHHHcC----------CCCCCEEEEEeeCCCC-CCCHHHHccccceeecCCCCH-HHHHHHHHHHHHHHh
Q 010366 349 SEAQRSALNALLFRTG----------DQSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYI 416 (512)
Q Consensus 349 ~~~~~~~l~~ll~~~~----------~~~~~viiI~ttN~~~-~l~~al~~R~~~~i~~~~p~~-~er~~Il~~~l~~~~ 416 (512)
+...+..|..++..-. ..+.++++|+|+|..+ .+.+++++||...+.+++|+. +++.+|++.......
T Consensus 144 ~~~~Q~~Ll~~l~~g~~~v~r~G~~~~~~~r~iviat~np~eg~l~~~LldRf~l~i~l~~p~~~eer~eIL~~~~~~~~ 223 (337)
T TIGR02030 144 EDHLVDVLLDVAASGWNVVEREGISIRHPARFVLVGSGNPEEGELRPQLLDRFGLHAEIRTVRDVELRVEIVERRTEYDA 223 (337)
T ss_pred CHHHHHHHHHHHHhCCeEEEECCEEEEcCCCEEEEeccccccCCCCHHHHhhcceEEECCCCCCHHHHHHHHHhhhhccc
Confidence 4455555555553310 1235688888888755 799999999999999999976 889999987542200
Q ss_pred hhh-----CCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 010366 417 AQA-----GSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 488 (512)
Q Consensus 417 ~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~ 488 (512)
... ...........+......+.--.++++.+.+++.. +..-|+|.-..++.++++.+.-.+...++.+|+.
T Consensus 224 ~~~~~~~~~~~e~~~~~~~I~~a~~~~~~V~v~d~~~~~i~~l~~~~~~~s~Ra~i~l~raArA~Aal~GR~~V~~dDv~ 303 (337)
T TIGR02030 224 DPHAFCEKWQTEQEALQAKIVNAQNLLPQVTIPYDVLVKVAELCAELDVDGLRGELTLNRAAKALAAFEGRTEVTVDDIR 303 (337)
T ss_pred CchhhhhhhhhhhhcCHHHHHHHHHHhccCcCCHHHHHHHHHHHHHHCCCCCcHHHHHHHHHHHHHHHcCCCCCCHHHHH
Confidence 000 00000001111111122222223778777776654 3333678888888888888888888999999999
Q ss_pred HHHHHHHHHHH
Q 010366 489 EVVDYKVAEHQ 499 (512)
Q Consensus 489 ~al~~~~~~~~ 499 (512)
.++..++.+..
T Consensus 304 ~~a~~vL~HR~ 314 (337)
T TIGR02030 304 RVAVLALRHRL 314 (337)
T ss_pred HHHHHHHHHhC
Confidence 99988776643
No 155
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=99.52 E-value=3.2e-13 Score=126.69 Aligned_cols=146 Identities=22% Similarity=0.314 Sum_probs=106.7
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC------------------------eEEEeCCCCCCCchhHHHHHHHHHH
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------------YALMTGGDVAPLGPQAVTKIHQLFD 320 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~------------------------~~~v~~~~~~~~~~~~~~~l~~lf~ 320 (512)
+..+..+||+||+|+|||++|+.+++.+... +..+.... .. ...+.++.+.+
T Consensus 11 ~~~~~~~L~~G~~G~gkt~~a~~~~~~l~~~~~~~~~~c~~~~~c~~~~~~~~~d~~~~~~~~-~~---~~~~~i~~i~~ 86 (188)
T TIGR00678 11 GRLAHAYLFAGPEGVGKELLALALAKALLCEQPGGGEPCGECPSCRLIEAGNHPDLHRLEPEG-QS---IKVDQVRELVE 86 (188)
T ss_pred CCCCeEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCcEEEecccc-Cc---CCHHHHHHHHH
Confidence 4444679999999999999999999987432 22222111 01 12344555555
Q ss_pred HHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecC
Q 010366 321 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 321 ~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~ 397 (512)
.+.. ...+.||+|||+|.+. ....+.|+..+++.+.++++|++||.+..+.+++.+|+ ..+.|+
T Consensus 87 ~~~~~~~~~~~kviiide~~~l~------------~~~~~~Ll~~le~~~~~~~~il~~~~~~~l~~~i~sr~-~~~~~~ 153 (188)
T TIGR00678 87 FLSRTPQESGRRVVIIEDAERMN------------EAAANALLKTLEEPPPNTLFILITPSPEKLLPTIRSRC-QVLPFP 153 (188)
T ss_pred HHccCcccCCeEEEEEechhhhC------------HHHHHHHHHHhcCCCCCeEEEEEECChHhChHHHHhhc-EEeeCC
Confidence 5443 2345699999999972 23456677777777788889999988899999999999 799999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 398 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 398 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
+|+.++...++... . ++++.+..++..+.|
T Consensus 154 ~~~~~~~~~~l~~~--g----------------------------i~~~~~~~i~~~~~g 183 (188)
T TIGR00678 154 PLSEEALLQWLIRQ--G----------------------------ISEEAAELLLALAGG 183 (188)
T ss_pred CCCHHHHHHHHHHc--C----------------------------CCHHHHHHHHHHcCC
Confidence 99999998888765 1 567788889988866
No 156
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=99.50 E-value=5.8e-13 Score=134.38 Aligned_cols=153 Identities=20% Similarity=0.245 Sum_probs=111.9
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC------------------eEEE
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------YALM 299 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~------------------~~~v 299 (512)
|++|+|++.+++.+...+.. +.-+.++||+||+|+||+++|.++|+.+-+. +..+
T Consensus 3 f~~iiGq~~~~~~L~~~i~~-------~rl~ha~Lf~G~~G~Gk~~~A~~~a~~llc~~~c~~c~~~~~~~~~hPDl~~i 75 (314)
T PRK07399 3 FANLIGQPLAIELLTAAIKQ-------NRIAPAYLFAGPEGVGRKLAALCFIEGLLSQGSPSKNIRRRLEEGNHPDLLWV 75 (314)
T ss_pred HHHhCCHHHHHHHHHHHHHh-------CCCCceEEEECCCCCCHHHHHHHHHHHHcCCCCCCCcHhcccccCCCCCEEEE
Confidence 89999999999999776532 3333589999999999999999999986322 1222
Q ss_pred eCCCCCCCc-------------------hhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHH
Q 010366 300 TGGDVAPLG-------------------PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALN 357 (512)
Q Consensus 300 ~~~~~~~~~-------------------~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~ 357 (512)
.+.... .+ .-....++.+...+.. ...+.|++||++|.+ .....|
T Consensus 76 ~p~~~~-~g~~~~~~~~~~~~~~~~~~~~I~id~ir~i~~~l~~~p~~~~~kVvII~~ae~m------------~~~aaN 142 (314)
T PRK07399 76 EPTYQH-QGKLITASEAEEAGLKRKAPPQIRLEQIREIKRFLSRPPLEAPRKVVVIEDAETM------------NEAAAN 142 (314)
T ss_pred eccccc-cccccchhhhhhccccccccccCcHHHHHHHHHHHccCcccCCceEEEEEchhhc------------CHHHHH
Confidence 110000 00 0112345555555443 234679999999996 244667
Q ss_pred HHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHH
Q 010366 358 ALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 358 ~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l 412 (512)
.||..+++++ +++||++|+.++.+-|.++||+ ..+.|++|+.++...++....
T Consensus 143 aLLK~LEEPp-~~~fILi~~~~~~Ll~TI~SRc-q~i~f~~l~~~~~~~~L~~~~ 195 (314)
T PRK07399 143 ALLKTLEEPG-NGTLILIAPSPESLLPTIVSRC-QIIPFYRLSDEQLEQVLKRLG 195 (314)
T ss_pred HHHHHHhCCC-CCeEEEEECChHhCcHHHHhhc-eEEecCCCCHHHHHHHHHHhh
Confidence 8888888777 7789999999999999999999 999999999999999888754
No 157
>TIGR02442 Cob-chelat-sub cobaltochelatase subunit. A number of genomes (actinobacteria, cyanobacteria, betaproteobacteria and pseudomonads) which apparently biosynthesize B12, encode a cobN gene but are demonstrably lacking cobS and cobT. These genomes do, however contain a homolog (modelled here) of the magnesium chelatase subunits BchI/BchD family. Aside from the cyanobacteria (which have a separate magnesium chelatase trimer), these species do not make chlorins, so do not have any use for a magnesium chelatase. Furthermore, in nearly all cases the members of this family are proximal to either CobN itself or other genes involved in cobalt transport or B12 biosynthesis.
Probab=99.49 E-value=1.4e-12 Score=143.90 Aligned_cols=245 Identities=16% Similarity=0.170 Sum_probs=148.5
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC------------------------
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG------------------------ 293 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~------------------------ 293 (512)
|..|||++.++..+.-... ++ ...++||.||||||||++|++|+..+.
T Consensus 3 f~~ivGq~~~~~al~~~av---~~-----~~g~vli~G~~GtgKs~lar~l~~~lp~~~~~~~~~~~c~p~~~~~~~~~~ 74 (633)
T TIGR02442 3 FTAIVGQEDLKLALLLNAV---DP-----RIGGVLIRGEKGTAKSTAARGLAALLPPIDVVAGCPFSCDPDDPEEWCEEC 74 (633)
T ss_pred cchhcChHHHHHHHHHHhh---CC-----CCCeEEEEcCCCCcHHHHHHHHHHhCCCceeccCCcCCCCCCCccccChhh
Confidence 7899999999987743221 11 124799999999999999999998872
Q ss_pred -----------CCeEEEeCCCCCC--Cchh-HHHHHH---HHHHH-HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHH
Q 010366 294 -----------LDYALMTGGDVAP--LGPQ-AVTKIH---QLFDW-AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSA 355 (512)
Q Consensus 294 -----------~~~~~v~~~~~~~--~~~~-~~~~l~---~lf~~-a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 355 (512)
.||+.+.++.... .|+. ....+. ..+.. .......+||||||++.+ +...+..
T Consensus 75 ~~~~~~~~~~~~pfv~~p~~~t~~~l~G~~d~~~~l~~g~~~~~~G~L~~A~~GiL~lDEi~~l---------~~~~q~~ 145 (633)
T TIGR02442 75 RRKYRPSEQRPVPFVNLPLGATEDRVVGSLDIERALREGEKAFQPGLLAEAHRGILYIDEVNLL---------DDHLVDV 145 (633)
T ss_pred hhcccccccCCCCeeeCCCCCcHHHcCCcccHHHHhhcCCeeecCcceeecCCCeEEeChhhhC---------CHHHHHH
Confidence 3455544332211 1110 000000 00000 000112579999999997 4455555
Q ss_pred HHHHHHHcC----------CCCCCEEEEEeeCCC-CCCCHHHHccccceeecCCCC-HHHHHHHHHHHHHHHhhhh----
Q 010366 356 LNALLFRTG----------DQSKDIVLALATNRP-GDLDSAVADRIDEVLEFPLPG-QEERFKLLKLYLDKYIAQA---- 419 (512)
Q Consensus 356 l~~ll~~~~----------~~~~~viiI~ttN~~-~~l~~al~~R~~~~i~~~~p~-~~er~~Il~~~l~~~~~~~---- 419 (512)
|..++..-. ..+.++++|+|+|.. ..+.+++++||+..+.++.+. .+++.+++...+.......
T Consensus 146 Ll~~le~g~~~v~r~g~~~~~~~~~~lIat~np~eg~l~~~L~dR~~l~i~v~~~~~~~~~~~il~~~~~~~~~~~~~~~ 225 (633)
T TIGR02442 146 LLDAAAMGVNRVEREGLSVSHPARFVLIGTMNPEEGDLRPQLLDRFGLCVDVAAPRDPEERVEIIRRRLAFDADPEAFAA 225 (633)
T ss_pred HHHHHhcCCEEEEECCceeeecCCeEEEEecCCCCCCCCHHHHhhcceEEEccCCCchHHHHHHHHHHHhhccCcHHHHH
Confidence 555554210 123568999999964 468899999999889888774 5778888876543110000
Q ss_pred CCCCC-cchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCC-cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 420 GSRKP-GLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGF-SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 420 ~~~~~-~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~-s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
..... ..+...+......+..-.++++.+..++..+ .|. +.|....++..+.+.+.-.+...++.+|+.+|+..++
T Consensus 226 ~~~~~~~~l~~~i~~ar~~~~~V~is~~~~~~l~~~~~~~~i~s~Ra~i~~~r~Ara~AaL~gr~~V~~~Dv~~A~~lvL 305 (633)
T TIGR02442 226 RWAAEQEELRNRIARARSLLPSVRISDSLIRFISELCIEFGVDGHRADIVMARAARALAALDGRRRVTAEDVREAAELVL 305 (633)
T ss_pred HhhhhHHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHHHHh
Confidence 00000 0000000000111111246888888887775 344 4677777888888877777779999999999999988
Q ss_pred HHHH
Q 010366 496 AEHQ 499 (512)
Q Consensus 496 ~~~~ 499 (512)
.+..
T Consensus 306 ~hR~ 309 (633)
T TIGR02442 306 PHRR 309 (633)
T ss_pred hhhc
Confidence 7654
No 158
>TIGR01817 nifA Nif-specific regulatory protein. This model represents NifA, a DNA-binding regulatory protein for nitrogen fixation. The model produces scores between the trusted and noise cutoffs for a well-described NifA homolog in Aquifex aeolicus (which lacks nitrogenase), for transcriptional activators of alternative nitrogenases (VFe or FeFe instead of MoFe), and truncated forms.
Probab=99.49 E-value=1.2e-12 Score=142.17 Aligned_cols=214 Identities=20% Similarity=0.229 Sum_probs=141.8
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchh
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ 310 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~ 310 (512)
+...|+++||.+.....+...+...+.. +. +|||+|++|||||++|++|.... +.||+.++|..+.....
T Consensus 191 ~~~~~~~liG~s~~~~~~~~~~~~~a~~---~~---pvli~Ge~GtGK~~lA~~ih~~s~r~~~pfv~i~c~~~~~~~~- 263 (534)
T TIGR01817 191 RSGKEDGIIGKSPAMRQVVDQARVVARS---NS---TVLLRGESGTGKELIAKAIHYLSPRAKRPFVKVNCAALSETLL- 263 (534)
T ss_pred ccCccCceEECCHHHHHHHHHHHHHhCc---CC---CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeecCCCCHHHH-
Confidence 3456899999999888887666555422 22 59999999999999999998875 47999999988753110
Q ss_pred HHHHHHHHHHHH--------------HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC-----C---CCC
Q 010366 311 AVTKIHQLFDWA--------------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSK 368 (512)
Q Consensus 311 ~~~~l~~lf~~a--------------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~ 368 (512)
.. .+|... .....+++||||||+.| +...+..|..+++.-. . ...
T Consensus 264 -~~---~lfg~~~~~~~~~~~~~~g~~~~a~~GtL~ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~ 330 (534)
T TIGR01817 264 -ES---ELFGHEKGAFTGAIAQRKGRFELADGGTLFLDEIGEI---------SPAFQAKLLRVLQEGEFERVGGNRTLKV 330 (534)
T ss_pred -HH---HHcCCCCCccCCCCcCCCCcccccCCCeEEEechhhC---------CHHHHHHHHHHHhcCcEEECCCCceEee
Confidence 11 111100 01123689999999997 5566666666665421 0 123
Q ss_pred CEEEEEeeCCC-------CCCCHHHHcccc-ceeecCCCC--HHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhh
Q 010366 369 DIVLALATNRP-------GDLDSAVADRID-EVLEFPLPG--QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 438 (512)
Q Consensus 369 ~viiI~ttN~~-------~~l~~al~~R~~-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (512)
++.||+||+.. ..+.+.|..|+. ..|.+|+.. .+++..++..++..+....+ .
T Consensus 331 ~~riI~~s~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLreR~eDi~~L~~~~l~~~~~~~~-----------------~ 393 (534)
T TIGR01817 331 DVRLVAATNRDLEEAVAKGEFRADLYYRINVVPIFLPPLRERREDIPLLAEAFLEKFNRENG-----------------R 393 (534)
T ss_pred cEEEEEeCCCCHHHHHHcCCCCHHHHHHhcCCeeeCCCcccccccHHHHHHHHHHHHHHHcC-----------------C
Confidence 58899988763 467788888883 234555544 34555666666665432211 1
Q ss_pred hhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 010366 439 EIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 488 (512)
Q Consensus 439 ~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~ 488 (512)
. ..++++.+..|..+.+..+.+++.+++..+... .....|+.+++.
T Consensus 394 ~-~~~s~~a~~~L~~~~WPGNvrEL~~v~~~a~~~---~~~~~I~~~~l~ 439 (534)
T TIGR01817 394 P-LTITPSAIRVLMSCKWPGNVRELENCLERTATL---SRSGTITRSDFS 439 (534)
T ss_pred C-CCCCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCcccHHHCc
Confidence 1 238999999999998777888888888644332 334678888874
No 159
>PF06068 TIP49: TIP49 C-terminus; InterPro: IPR010339 This family consists of the C-terminal region of several eukaryotic and archaeal RuvB-like 1 (Pontin or TIP49a) and RuvB-like 2 (Reptin or TIP49b) proteins. The N-terminal domain contains the AAA ATPase, central region IPR003959 from INTERPRO domain. In zebrafish, the liebeskummer (lik) mutation, causes development of hyperplastic embryonic hearts. lik encodes Reptin, a component of a DNA-stimulated ATPase complex. Beta-catenin and Pontin, a DNA-stimulated ATPase that is often part of complexes with Reptin, are in the same genetic pathways. The Reptin/Pontin ratio serves to regulate heart growth during development, at least in part via the beta-catenin pathway []. TBP-interacting protein 49 (TIP49) was originally identified as a TBP-binding protein, and two related proteins are encoded by individual genes, tip49a and b. Although the function of this gene family has not been elucidated, they are supposed to play a critical role in nuclear events because they interact with various kinds of nuclear factors and have DNA helicase activities. TIP49a has been suggested to act as an autoantigen in some patients with autoimmune diseases [].; GO: 0003678 DNA helicase activity, 0005524 ATP binding; PDB: 2XSZ_E 2CQA_A 2C9O_C.
Probab=99.49 E-value=5.4e-13 Score=133.35 Aligned_cols=102 Identities=25% Similarity=0.251 Sum_probs=65.6
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC------------CCCCCHHHHccccceee
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------PGDLDSAVADRIDEVLE 395 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~------------~~~l~~al~~R~~~~i~ 395 (512)
|+||||||++.| .-+....|+..+ +....+ +||++||+ |..++..|++|+ .+|.
T Consensus 279 pGVLFIDEvHmL---------DiEcFsfLnral---Es~~sP-iiIlATNRg~~~irGt~~~sphGiP~DlLDRl-lII~ 344 (398)
T PF06068_consen 279 PGVLFIDEVHML---------DIECFSFLNRAL---ESELSP-IIILATNRGITKIRGTDIISPHGIPLDLLDRL-LIIR 344 (398)
T ss_dssp E-EEEEESGGGS---------BHHHHHHHHHHH---TSTT---EEEEEES-SEEE-BTTS-EEETT--HHHHTTE-EEEE
T ss_pred cceEEecchhhc---------cHHHHHHHHHHh---cCCCCc-EEEEecCceeeeccCccCcCCCCCCcchHhhc-EEEE
Confidence 569999999987 334444555554 444445 46677774 678899999999 9999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHH
Q 010366 396 FPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM 467 (512)
Q Consensus 396 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv 467 (512)
..+|+.++..+|++.++...... +++++++.|+......|-|---+|+
T Consensus 345 t~py~~~ei~~Il~iR~~~E~v~------------------------i~~~al~~L~~ig~~~SLRYAiqLi 392 (398)
T PF06068_consen 345 TKPYSEEEIKQILKIRAKEEDVE------------------------ISEDALDLLTKIGVETSLRYAIQLI 392 (398)
T ss_dssp E----HHHHHHHHHHHHHHCT--------------------------B-HHHHHHHHHHHHHS-HHHHHHCH
T ss_pred CCCCCHHHHHHHHHhhhhhhcCc------------------------CCHHHHHHHHHHhhhccHHHHHHhh
Confidence 99999999999999999875433 8888898888776555555444444
No 160
>KOG1942 consensus DNA helicase, TBP-interacting protein [Replication, recombination and repair]
Probab=99.48 E-value=4.3e-12 Score=121.74 Aligned_cols=133 Identities=18% Similarity=0.157 Sum_probs=97.3
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC-------------CCCCCHHHHcccccee
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-------------PGDLDSAVADRIDEVL 394 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~-------------~~~l~~al~~R~~~~i 394 (512)
|+||||||++.| .-..|..|-..++..-.++ +|++||+ |..+++.+++|+ .+|
T Consensus 297 PGVLFIDEVhML------------DiEcFTyL~kalES~iaPi-vifAsNrG~~~irGt~d~~sPhGip~dllDRl-~Ii 362 (456)
T KOG1942|consen 297 PGVLFIDEVHML------------DIECFTYLHKALESPIAPI-VIFASNRGMCTIRGTEDILSPHGIPPDLLDRL-LII 362 (456)
T ss_pred CcceEeeehhhh------------hhHHHHHHHHHhcCCCCce-EEEecCCcceeecCCcCCCCCCCCCHHHhhhe-eEE
Confidence 679999999986 2345555555555444454 5566664 678899999999 888
Q ss_pred ecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 010366 395 EFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV 474 (512)
Q Consensus 395 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~ 474 (512)
..-+++.++.++|++.+......+ ++++.++.++.....-|-|--.+|+.-+...+
T Consensus 363 rt~~y~~~e~r~Ii~~Ra~~E~l~------------------------~~e~a~~~l~~~gt~tsLRy~vqLl~p~~~~a 418 (456)
T KOG1942|consen 363 RTLPYDEEEIRQIIKIRAQVEGLQ------------------------VEEEALDLLAEIGTSTSLRYAVQLLTPASILA 418 (456)
T ss_pred eeccCCHHHHHHHHHHHHhhhcce------------------------ecHHHHHHHHhhccchhHHHHHHhcCHHHHHH
Confidence 888999999999999988764433 78899999998765556666666665444445
Q ss_pred hCCCCCccCHHHHHHHHHHHHHHH
Q 010366 475 YGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 475 ~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
...+...|..++++++-+-+....
T Consensus 419 k~~g~~~i~v~dvee~~~Lf~Dak 442 (456)
T KOG1942|consen 419 KTNGRKEISVEDVEEVTELFLDAK 442 (456)
T ss_pred HHcCCceeecccHHHHHHHHHhch
Confidence 445557899999999887766543
No 161
>PRK04132 replication factor C small subunit; Provisional
Probab=99.47 E-value=1.3e-12 Score=145.45 Aligned_cols=176 Identities=21% Similarity=0.199 Sum_probs=129.1
Q ss_pred CCCcceEEec--CCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcC-----CCcEEEE
Q 010366 266 APFRNMLFYG--PPGTGKTMAARELARKS-----GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSK-----RGLLLFI 333 (512)
Q Consensus 266 ~p~~~vLL~G--ppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~-----~~~vl~l 333 (512)
.|.-+-+..| |++.||||+|+++|+.+ +.+++.+|+++... ...++.+...+.... ++.|+||
T Consensus 562 ~~~~~~~~~G~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rg-----id~IR~iIk~~a~~~~~~~~~~KVvII 636 (846)
T PRK04132 562 VPGYHNFIGGNLPTVLHNTTAALALARELFGENWRHNFLELNASDERG-----INVIREKVKEFARTKPIGGASFKIIFL 636 (846)
T ss_pred cCchhhhhcCCCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCccc-----HHHHHHHHHHHHhcCCcCCCCCEEEEE
Confidence 3444677889 99999999999999997 45799999987532 224444444333222 2469999
Q ss_pred ccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHH
Q 010366 334 DEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLD 413 (512)
Q Consensus 334 DEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~ 413 (512)
||+|.| + ....+.|+..++.++.++.||++||.+..+.++++||| ..+.|++|+.++....+...+.
T Consensus 637 DEaD~L---------t---~~AQnALLk~lEep~~~~~FILi~N~~~kIi~tIrSRC-~~i~F~~ls~~~i~~~L~~I~~ 703 (846)
T PRK04132 637 DEADAL---------T---QDAQQALRRTMEMFSSNVRFILSCNYSSKIIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAE 703 (846)
T ss_pred ECcccC---------C---HHHHHHHHHHhhCCCCCeEEEEEeCChhhCchHHhhhc-eEEeCCCCCHHHHHHHHHHHHH
Confidence 999997 2 23556677777778889999999999999999999999 9999999999999998888776
Q ss_pred HHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHH
Q 010366 414 KYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFRE 489 (512)
Q Consensus 414 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~ 489 (512)
.... .++++.+..++..+.| |++.+++.++.++... ..||.+++..
T Consensus 704 ~Egi------------------------~i~~e~L~~Ia~~s~G----DlR~AIn~Lq~~~~~~--~~It~~~V~~ 749 (846)
T PRK04132 704 NEGL------------------------ELTEEGLQAILYIAEG----DMRRAINILQAAAALD--DKITDENVFL 749 (846)
T ss_pred hcCC------------------------CCCHHHHHHHHHHcCC----CHHHHHHHHHHHHHhc--CCCCHHHHHH
Confidence 5321 1788999999999877 4444444445444322 3455555443
No 162
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=99.47 E-value=2e-12 Score=131.58 Aligned_cols=196 Identities=18% Similarity=0.181 Sum_probs=127.0
Q ss_pred cccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHH--
Q 010366 241 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKI-- 315 (512)
Q Consensus 241 vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l-- 315 (512)
+||.+..+..+...+...+.. +. +|||+|++||||+++|++|.... +.||+.++|..+.....+ ..+
T Consensus 1 liG~S~~m~~~~~~~~~~a~~---~~---pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~~~~~~~l~--~~lfG 72 (329)
T TIGR02974 1 LIGESNAFLEVLEQVSRLAPL---DR---PVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCAALSENLLD--SELFG 72 (329)
T ss_pred CCcCCHHHHHHHHHHHHHhCC---CC---CEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCCCCChHHHH--HHHhc
Confidence 467777777776555544322 22 49999999999999999997665 379999999887531111 110
Q ss_pred -------------HHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEE
Q 010366 316 -------------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLAL 374 (512)
Q Consensus 316 -------------~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ 374 (512)
...|.. ..+++||||||+.| +...+..|..+++.-. ....++.||+
T Consensus 73 ~~~g~~~ga~~~~~G~~~~----a~gGtL~Ldei~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (329)
T TIGR02974 73 HEAGAFTGAQKRHQGRFER----ADGGTLFLDELATA---------SLLVQEKLLRVIEYGEFERVGGSQTLQVDVRLVC 139 (329)
T ss_pred cccccccCcccccCCchhh----CCCCEEEeCChHhC---------CHHHHHHHHHHHHcCcEEecCCCceeccceEEEE
Confidence 011222 23689999999997 5566777777765421 1235689999
Q ss_pred eeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhh-cCCCHH
Q 010366 375 ATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI-KGLTDD 446 (512)
Q Consensus 375 ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~ 446 (512)
+||.. ..+.+.|..|+ ..+.+..|+..+|..-+...+..+..... ...+..+ ..++++
T Consensus 140 at~~~l~~~~~~g~fr~dL~~rl-~~~~i~lPpLReR~eDI~~L~~~fl~~~~-------------~~~~~~~~~~ls~~ 205 (329)
T TIGR02974 140 ATNADLPALAAEGRFRADLLDRL-AFDVITLPPLRERQEDIMLLAEHFAIRMA-------------RELGLPLFPGFTPQ 205 (329)
T ss_pred echhhHHHHhhcCchHHHHHHHh-cchhcCCCchhhhhhhHHHHHHHHHHHHH-------------HHhCCCCCCCcCHH
Confidence 98763 35778888899 45566666666665544444433221100 0001111 248999
Q ss_pred HHHHHHHHcCCCcHHHHHHHHHHHH
Q 010366 447 ILMEAAAKTEGFSGREIAKLMASVQ 471 (512)
Q Consensus 447 ~l~~la~~t~g~s~~dI~~lv~~~~ 471 (512)
++..|..+.+..+.+++.+++..+.
T Consensus 206 a~~~L~~y~WPGNvrEL~n~i~~~~ 230 (329)
T TIGR02974 206 AREQLLEYHWPGNVRELKNVVERSV 230 (329)
T ss_pred HHHHHHhCCCCchHHHHHHHHHHHH
Confidence 9999999988778899998885443
No 163
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=99.47 E-value=1.6e-12 Score=131.94 Aligned_cols=132 Identities=26% Similarity=0.361 Sum_probs=99.5
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC------------------------eEEEeCCCCCCCchhHHHHHHHHHH
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------------YALMTGGDVAPLGPQAVTKIHQLFD 320 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~------------------------~~~v~~~~~~~~~~~~~~~l~~lf~ 320 (512)
+..+..+||+||+|+|||++|+.+|+.+.+. ++.+....-. ..-..+.++.+.+
T Consensus 19 ~r~~ha~Lf~G~~G~GK~~~A~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~~~~~~--~~i~id~iR~l~~ 96 (328)
T PRK05707 19 GRHPHAYLLHGPAGIGKRALAERLAAALLCEAPQGGGACGSCKGCQLLRAGSHPDNFVLEPEEAD--KTIKVDQVRELVS 96 (328)
T ss_pred CCcceeeeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccCCC--CCCCHHHHHHHHH
Confidence 4445679999999999999999999987531 2222221100 0113455566655
Q ss_pred HHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecC
Q 010366 321 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 321 ~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~ 397 (512)
.+.. ...+-|++||++|.+ .....|.||..+++++.+++||++|+.++.+.|.++||+ ..+.|+
T Consensus 97 ~~~~~~~~~~~kv~iI~~a~~m------------~~~aaNaLLK~LEEPp~~~~fiL~t~~~~~ll~TI~SRc-~~~~~~ 163 (328)
T PRK05707 97 FVVQTAQLGGRKVVLIEPAEAM------------NRNAANALLKSLEEPSGDTVLLLISHQPSRLLPTIKSRC-QQQACP 163 (328)
T ss_pred HHhhccccCCCeEEEECChhhC------------CHHHHHHHHHHHhCCCCCeEEEEEECChhhCcHHHHhhc-eeeeCC
Confidence 5543 234568999999996 346778889989989999999999999999999999999 789999
Q ss_pred CCCHHHHHHHHHHH
Q 010366 398 LPGQEERFKLLKLY 411 (512)
Q Consensus 398 ~p~~~er~~Il~~~ 411 (512)
+|+.++....+...
T Consensus 164 ~~~~~~~~~~L~~~ 177 (328)
T PRK05707 164 LPSNEESLQWLQQA 177 (328)
T ss_pred CcCHHHHHHHHHHh
Confidence 99999988887764
No 164
>COG3604 FhlA Transcriptional regulator containing GAF, AAA-type ATPase, and DNA binding domains [Transcription / Signal transduction mechanisms]
Probab=99.47 E-value=4.2e-13 Score=137.62 Aligned_cols=206 Identities=21% Similarity=0.263 Sum_probs=148.9
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhH
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~ 311 (512)
...+.++||.+.++..+...+...+.... .|||+|.+||||..+|++|.... ..||+++||+.++...-++
T Consensus 219 ~~~~~~iIG~S~am~~ll~~i~~VA~Sd~------tVLi~GETGtGKElvAraIH~~S~R~~kPfV~~NCAAlPesLlES 292 (550)
T COG3604 219 VLEVGGIIGRSPAMRQLLKEIEVVAKSDS------TVLIRGETGTGKELVARAIHQLSPRRDKPFVKLNCAALPESLLES 292 (550)
T ss_pred hcccccceecCHHHHHHHHHHHHHhcCCC------eEEEecCCCccHHHHHHHHHhhCcccCCCceeeeccccchHHHHH
Confidence 45678999999999999887777765544 59999999999999999998776 4799999999997643322
Q ss_pred --HHHHHHHHHHHHhcC-------CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEE
Q 010366 312 --VTKIHQLFDWAKKSK-------RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLAL 374 (512)
Q Consensus 312 --~~~l~~lf~~a~~~~-------~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ 374 (512)
....+..|.-|...+ .++.||||||..| +.+.+..|...|+.-+ ....+|.||+
T Consensus 293 ELFGHeKGAFTGA~~~r~GrFElAdGGTLFLDEIGel---------PL~lQaKLLRvLQegEieRvG~~r~ikVDVRiIA 363 (550)
T COG3604 293 ELFGHEKGAFTGAINTRRGRFELADGGTLFLDEIGEL---------PLALQAKLLRVLQEGEIERVGGDRTIKVDVRVIA 363 (550)
T ss_pred HHhcccccccccchhccCcceeecCCCeEechhhccC---------CHHHHHHHHHHHhhcceeecCCCceeEEEEEEEe
Confidence 233344444444322 2679999999986 6678888888887642 1234699999
Q ss_pred eeCC-------CCCCCHHHHccccceeecCCCCHHHHHHHHHH----HHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 375 ATNR-------PGDLDSAVADRIDEVLEFPLPGQEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 375 ttN~-------~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
+||. ...+-..+.-|+ .++.+..|+..+|..-+-. ++.+.....+ ...-.+
T Consensus 364 ATNRDL~~~V~~G~FRaDLYyRL-sV~Pl~lPPLRER~~DIplLA~~Fle~~~~~~g-----------------r~~l~l 425 (550)
T COG3604 364 ATNRDLEEMVRDGEFRADLYYRL-SVFPLELPPLRERPEDIPLLAGYFLEKFRRRLG-----------------RAILSL 425 (550)
T ss_pred ccchhHHHHHHcCcchhhhhhcc-cccccCCCCcccCCccHHHHHHHHHHHHHHhcC-----------------Cccccc
Confidence 9997 245666666688 7888888888887764443 3333322211 111238
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAA 473 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa 473 (512)
+.++++.|..+....+.|++++++..+-..
T Consensus 426 s~~Al~~L~~y~wPGNVRELen~veRavll 455 (550)
T COG3604 426 SAEALELLSSYEWPGNVRELENVVERAVLL 455 (550)
T ss_pred CHHHHHHHHcCCCCCcHHHHHHHHHHHHHH
Confidence 899999999998877899999999655443
No 165
>PRK10820 DNA-binding transcriptional regulator TyrR; Provisional
Probab=99.46 E-value=1.3e-12 Score=140.96 Aligned_cols=203 Identities=17% Similarity=0.233 Sum_probs=134.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
.....+|++++|.+.....+...+...+.. +. +|||+|++||||+++|+++.... ..||+.++|..+++..
T Consensus 197 ~~~~~~f~~~ig~s~~~~~~~~~~~~~A~~---~~---pvlI~GE~GtGK~~lA~aiH~~s~r~~~pfv~inca~~~~~~ 270 (520)
T PRK10820 197 VNDDSAFSQIVAVSPKMRQVVEQARKLAML---DA---PLLITGDTGTGKDLLAYACHLRSPRGKKPFLALNCASIPDDV 270 (520)
T ss_pred ccccccccceeECCHHHHHHHHHHHHHhCC---CC---CEEEECCCCccHHHHHHHHHHhCCCCCCCeEEeccccCCHHH
Confidence 346678999999998887776555444332 33 49999999999999999997654 3689999998876411
Q ss_pred hhHH-------------HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCC
Q 010366 309 PQAV-------------TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQS 367 (512)
Q Consensus 309 ~~~~-------------~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~ 367 (512)
.++. ..-..+|+.+ .+++||||||+.+ +...+..|..+++.-. ...
T Consensus 271 ~e~elFG~~~~~~~~~~~~~~g~~e~a----~~GtL~LdeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~ 337 (520)
T PRK10820 271 VESELFGHAPGAYPNALEGKKGFFEQA----NGGSVLLDEIGEM---------SPRMQAKLLRFLNDGTFRRVGEDHEVH 337 (520)
T ss_pred HHHHhcCCCCCCcCCcccCCCChhhhc----CCCEEEEeChhhC---------CHHHHHHHHHHHhcCCcccCCCCccee
Confidence 1100 0001123322 3689999999997 5567777777775421 122
Q ss_pred CCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCcchhhhhhhhhh
Q 010366 368 KDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQ 436 (512)
Q Consensus 368 ~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
.++.||+||+.+ ..+.+.+..|+ ..+.+..|+..+|.. ++..++..+....
T Consensus 338 ~~vRiI~st~~~l~~l~~~g~f~~dL~~rL-~~~~i~lPpLreR~~Di~~L~~~fl~~~~~~~----------------- 399 (520)
T PRK10820 338 VDVRVICATQKNLVELVQKGEFREDLYYRL-NVLTLNLPPLRDRPQDIMPLTELFVARFADEQ----------------- 399 (520)
T ss_pred eeeEEEEecCCCHHHHHHcCCccHHHHhhc-CeeEEeCCCcccChhHHHHHHHHHHHHHHHHc-----------------
Confidence 467899988763 35778888898 456666666666664 4444444432211
Q ss_pred hhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010366 437 KIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQ 471 (512)
Q Consensus 437 ~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~ 471 (512)
+.....++++.+..|..+.+..+.+++++++..+.
T Consensus 400 g~~~~~ls~~a~~~L~~y~WPGNvreL~nvl~~a~ 434 (520)
T PRK10820 400 GVPRPKLAADLNTVLTRYGWPGNVRQLKNAIYRAL 434 (520)
T ss_pred CCCCCCcCHHHHHHHhcCCCCCHHHHHHHHHHHHH
Confidence 11123489999999998877778888888775443
No 166
>PRK15424 propionate catabolism operon regulatory protein PrpR; Provisional
Probab=99.46 E-value=1.9e-12 Score=138.78 Aligned_cols=216 Identities=20% Similarity=0.233 Sum_probs=136.0
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHH-----------hCCCeEEEeCCCC
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK-----------SGLDYALMTGGDV 304 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~-----------l~~~~~~v~~~~~ 304 (512)
..|++++|.+..+..+...+...+... .+|||+|+|||||+++|++|... .+.||+.+||+.+
T Consensus 216 ~~f~~iiG~S~~m~~~~~~i~~~A~s~------~pVLI~GE~GTGKe~~A~~IH~~~~~~~~~~S~r~~~pfv~inCaal 289 (538)
T PRK15424 216 YVLGDLLGQSPQMEQVRQTILLYARSS------AAVLIQGETGTGKELAAQAIHREYFARHDARQGKKSHPFVAVNCGAI 289 (538)
T ss_pred cchhheeeCCHHHHHHHHHHHHHhCCC------CcEEEECCCCCCHHHHHHHHHHhhcccccccCccCCCCeEEeecccC
Confidence 468999999998888877665444332 25999999999999999999876 3579999999987
Q ss_pred CCCchhHH--H------------HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC------
Q 010366 305 APLGPQAV--T------------KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------ 364 (512)
Q Consensus 305 ~~~~~~~~--~------------~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------ 364 (512)
+...-++. . .-..+|+.+ .+++||||||+.| +...+..|..+++.-.
T Consensus 290 ~e~lleseLFG~~~gaftga~~~~~~Gl~e~A----~gGTLfLdeI~~L---------p~~~Q~kLl~~L~e~~~~r~G~ 356 (538)
T PRK15424 290 AESLLEAELFGYEEGAFTGSRRGGRAGLFEIA----HGGTLFLDEIGEM---------PLPLQTRLLRVLEEKEVTRVGG 356 (538)
T ss_pred ChhhHHHHhcCCccccccCccccccCCchhcc----CCCEEEEcChHhC---------CHHHHHHHHhhhhcCeEEecCC
Confidence 64211110 0 001123322 2679999999997 5677777777775421
Q ss_pred --CCCCCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhh
Q 010366 365 --DQSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQ 435 (512)
Q Consensus 365 --~~~~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 435 (512)
....++.+|++||.. ..+.+.+..|+ ..+.+..|+..+|.+-+...+..+......
T Consensus 357 ~~~~~~dvRiIaat~~~L~~~v~~g~Fr~dL~yrL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~~-------------- 421 (538)
T PRK15424 357 HQPVPVDVRVISATHCDLEEDVRQGRFRRDLFYRL-SILRLQLPPLRERVADILPLAESFLKQSLA-------------- 421 (538)
T ss_pred CceeccceEEEEecCCCHHHHHhcccchHHHHHHh-cCCeecCCChhhchhHHHHHHHHHHHHHHH--------------
Confidence 123467899998763 24666777788 667777777777766554444443221000
Q ss_pred hhhhhcCCCH-------HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHH
Q 010366 436 QKIEIKGLTD-------DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLF 487 (512)
Q Consensus 436 ~~~~~~~~~~-------~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~ 487 (512)
.... .+++ +.+..|..+.+..+.+++++++..+...........++.+++
T Consensus 422 -~~~~-~~~~~a~~~~~~a~~~L~~y~WPGNvREL~nvier~~i~~~~~~~~~i~~~~l 478 (538)
T PRK15424 422 -ALSA-PFSAALRQGLQQCETLLLHYDWPGNVRELRNLMERLALFLSVEPTPDLTPQFL 478 (538)
T ss_pred -HcCC-CCCHHHHHhhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcCCCCcCccCHHHh
Confidence 0000 1333 344677777777788999999865444322222234554443
No 167
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=99.46 E-value=1.7e-11 Score=121.53 Aligned_cols=195 Identities=17% Similarity=0.162 Sum_probs=123.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCC-CeEEEe--CCCCC---------------CCchhHH---HHHHHHHHHHHhcCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGL-DYALMT--GGDVA---------------PLGPQAV---TKIHQLFDWAKKSKRG 328 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~-~~~~v~--~~~~~---------------~~~~~~~---~~l~~lf~~a~~~~~~ 328 (512)
.++|+||+|+|||++++.++..+.. .+.... ..... ..+.... ..+...+........+
T Consensus 45 ~~~l~G~~G~GKTtl~~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~i~~~lG~~~~~~~~~~~~~~l~~~l~~~~~~~~~ 124 (269)
T TIGR03015 45 FILITGEVGAGKTTLIRNLLKRLDQERVVAAKLVNTRVDAEDLLRMVAADFGLETEGRDKAALLRELEDFLIEQFAAGKR 124 (269)
T ss_pred EEEEEcCCCCCHHHHHHHHHHhcCCCCeEEeeeeCCCCCHHHHHHHHHHHcCCCCCCCCHHHHHHHHHHHHHHHHhCCCC
Confidence 5899999999999999999998762 222111 11110 0011111 1222222222223456
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC--CCCC----CHHHHccccceeecCCCCHH
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR--PGDL----DSAVADRIDEVLEFPLPGQE 402 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~--~~~l----~~al~~R~~~~i~~~~p~~~ 402 (512)
.+|+|||++.+ .......+..+..........+.||++... ...+ ...+.+|+...+.+++++.+
T Consensus 125 ~vliiDe~~~l---------~~~~~~~l~~l~~~~~~~~~~~~vvl~g~~~~~~~l~~~~~~~l~~r~~~~~~l~~l~~~ 195 (269)
T TIGR03015 125 ALLVVDEAQNL---------TPELLEELRMLSNFQTDNAKLLQIFLVGQPEFRETLQSPQLQQLRQRIIASCHLGPLDRE 195 (269)
T ss_pred eEEEEECcccC---------CHHHHHHHHHHhCcccCCCCeEEEEEcCCHHHHHHHcCchhHHHHhheeeeeeCCCCCHH
Confidence 79999999986 223333444333322222333444454332 1111 23466788888999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCcc
Q 010366 403 ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 482 (512)
Q Consensus 403 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~i 482 (512)
+...++...+........ ..++++.++.|+..+.|. ++.|..++..+...+...+...|
T Consensus 196 e~~~~l~~~l~~~g~~~~--------------------~~~~~~~~~~i~~~s~G~-p~~i~~l~~~~~~~a~~~~~~~i 254 (269)
T TIGR03015 196 ETREYIEHRLERAGNRDA--------------------PVFSEGAFDAIHRFSRGI-PRLINILCDRLLLSAFLEEKREI 254 (269)
T ss_pred HHHHHHHHHHHHcCCCCC--------------------CCcCHHHHHHHHHHcCCc-ccHHHHHHHHHHHHHHHcCCCCC
Confidence 999999988865421100 137899999999999885 67899999877776666677899
Q ss_pred CHHHHHHHHHHH
Q 010366 483 DPSLFREVVDYK 494 (512)
Q Consensus 483 t~e~~~~al~~~ 494 (512)
|.+++..++...
T Consensus 255 ~~~~v~~~~~~~ 266 (269)
T TIGR03015 255 GGEEVREVIAEI 266 (269)
T ss_pred CHHHHHHHHHHh
Confidence 999999998764
No 168
>PRK13531 regulatory ATPase RavA; Provisional
Probab=99.46 E-value=5.6e-12 Score=131.63 Aligned_cols=238 Identities=16% Similarity=0.108 Sum_probs=137.9
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCC-CC-C-CchhHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGD-VA-P-LGPQAVT 313 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~-~~-~-~~~~~~~ 313 (512)
..|+|.+++++.+...+. ...++||+||||||||++|++|+..++. +|..+.+.. .+ . .|.....
T Consensus 20 ~~i~gre~vI~lll~aal----------ag~hVLL~GpPGTGKT~LAraLa~~~~~~~~F~~~~~~fttp~DLfG~l~i~ 89 (498)
T PRK13531 20 KGLYERSHAIRLCLLAAL----------SGESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 89 (498)
T ss_pred hhccCcHHHHHHHHHHHc----------cCCCEEEECCCChhHHHHHHHHHHHhcccCcceeeeeeecCcHHhcCcHHHh
Confidence 678999999988855441 1247999999999999999999998653 455444431 11 1 1111111
Q ss_pred HH--HHHHHHHHh--cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----C--CC-CCEEEEEeeCCCC--
Q 010366 314 KI--HQLFDWAKK--SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----D--QS-KDIVLALATNRPG-- 380 (512)
Q Consensus 314 ~l--~~lf~~a~~--~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~--~~-~~viiI~ttN~~~-- 380 (512)
.. ...|..... .....+||+|||..+ +...+..|...+++-. . .. ..-++++|||...
T Consensus 90 ~~~~~g~f~r~~~G~L~~A~lLfLDEI~ra---------sp~~QsaLLeam~Er~~t~g~~~~~lp~rfiv~ATN~LPE~ 160 (498)
T PRK13531 90 ALKDEGRYQRLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERRFRNGAHEEKIPMRLLVTASNELPEA 160 (498)
T ss_pred hhhhcCchhhhcCCccccccEEeecccccC---------CHHHHHHHHHHHHhCeEecCCeEEeCCCcEEEEECCCCccc
Confidence 11 111111110 001238999999875 4455555555553311 0 11 1123455556432
Q ss_pred -CCCHHHHccccceeecCCCC-HHHHHHHHHHHHHHHhhhhCCCCCcc-hhhh--hhhhhhhhhhcCCCHHHHHHHHHHc
Q 010366 381 -DLDSAVADRIDEVLEFPLPG-QEERFKLLKLYLDKYIAQAGSRKPGL-VHRL--FKSEQQKIEIKGLTDDILMEAAAKT 455 (512)
Q Consensus 381 -~l~~al~~R~~~~i~~~~p~-~~er~~Il~~~l~~~~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~l~~la~~t 455 (512)
.+.+++..||-..+.+|+|+ .++-..|+.......... ....+.. ...+ +...-..+ .+++..++++....
T Consensus 161 g~~leAL~DRFliri~vp~l~~~~~e~~lL~~~~~~~~~~-~~~~~vis~eel~~lq~~v~~V---~v~d~v~eyI~~L~ 236 (498)
T PRK13531 161 DSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP-VPASLQITDEEYQQWQKEIGKI---TLPDHVFELIFQLR 236 (498)
T ss_pred CCchHHhHhhEEEEEECCCCCchHHHHHHHHcccccccCC-CcccCCCCHHHHHHHHHHhcce---eCCHHHHHHHHHHH
Confidence 34569999998889999997 456677776642210000 0000100 0111 11112223 36777666665542
Q ss_pred ---------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHH
Q 010366 456 ---------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQ 500 (512)
Q Consensus 456 ---------~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~ 500 (512)
...|+|--.+++..+++.++-.+...++.+|+. .+..++.+...
T Consensus 237 ~~lr~~r~~~~~SpR~~~~l~~~akA~A~l~GR~~V~p~Dv~-ll~~vL~HRl~ 289 (498)
T PRK13531 237 QQLDALPNAPYVSDRRWKKAIRLLQASAFFSGRDAIAPIDLI-LLKDCLWHDAQ 289 (498)
T ss_pred HHHhcCCCCCCcCcHHHHHHHHHHHHHHHHCCCCCCCHHHHH-HhHHHhccCHH
Confidence 237999999999999999998888999999999 77666655433
No 169
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=99.46 E-value=9.7e-13 Score=131.53 Aligned_cols=133 Identities=19% Similarity=0.210 Sum_probs=98.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC----CchhH---------HHHHHHHHHHHHhcCCCcEEEEcc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----LGPQA---------VTKIHQLFDWAKKSKRGLLLFIDE 335 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~----~~~~~---------~~~l~~lf~~a~~~~~~~vl~lDE 335 (512)
+++||.||||||||++++.+|..++.+++.+++..... .|... .......+.+|.+ .+++|++||
T Consensus 65 ~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~~l~~~DliG~~~~~l~~g~~~~~f~~GpL~~A~~--~g~illlDE 142 (327)
T TIGR01650 65 RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDSHVSRIDLVGKDAIVLKDGKQITEFRDGILPWALQ--HNVALCFDE 142 (327)
T ss_pred CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecCCCChhhcCCCceeeccCCcceeEEecCcchhHHh--CCeEEEech
Confidence 46999999999999999999999999999998765432 11110 0011123334432 367899999
Q ss_pred chhhhhhcccCCCCHHHHHHHHHHHHH-----cCC------CCCCEEEEEeeCCCC------------CCCHHHHccccc
Q 010366 336 ADAFLCERNKTYMSEAQRSALNALLFR-----TGD------QSKDIVLALATNRPG------------DLDSAVADRIDE 392 (512)
Q Consensus 336 id~l~~~~~~~~~~~~~~~~l~~ll~~-----~~~------~~~~viiI~ttN~~~------------~l~~al~~R~~~ 392 (512)
+|.. .+.....|+.+|+. +.+ ...++.+|+|+|..+ .+++++++||-.
T Consensus 143 in~a---------~p~~~~~L~~lLE~~~~l~i~~~~~~i~~hp~FrviAT~Np~g~Gd~~G~y~Gt~~l~~A~lDRF~i 213 (327)
T TIGR01650 143 YDAG---------RPDVMFVIQRVLEAGGKLTLLDQNRVIRAHPAFRLFATANTIGLGDTTGLYHGTQQINQAQMDRWSI 213 (327)
T ss_pred hhcc---------CHHHHHHHHHHhccCCeEEECCCceEecCCCCeEEEEeeCCCCcCCCCcceeeeecCCHHHHhheee
Confidence 9985 45667778888863 111 334789999999854 468999999966
Q ss_pred eeecCCCCHHHHHHHHHHHH
Q 010366 393 VLEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 393 ~i~~~~p~~~er~~Il~~~l 412 (512)
++.+++|+.++-.+|+....
T Consensus 214 ~~~~~Yp~~e~E~~Il~~~~ 233 (327)
T TIGR01650 214 VTTLNYLEHDNEAAIVLAKA 233 (327)
T ss_pred EeeCCCCCHHHHHHHHHhhc
Confidence 78999999999999987654
No 170
>TIGR02329 propionate_PrpR propionate catabolism operon regulatory protein PrpR. At least five distinct pathways exists for the catabolism of propionate by way of propionyl-CoA. Members of this family represent the transcriptional regulatory protein PrpR, whose gene is found in most cases divergently transcribed from an operon for the methylcitric acid cycle of propionate catabolism. 2-methylcitric acid, a catabolite by this pathway, is a coactivator of PrpR.
Probab=99.45 E-value=2.6e-12 Score=137.89 Aligned_cols=219 Identities=19% Similarity=0.226 Sum_probs=138.5
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchh
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ 310 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~ 310 (512)
....|++++|.+..+..+...+...+... .+|||+|++||||+++|++|.... +.||+.++|..++...-+
T Consensus 207 ~~~~f~~iiG~S~~m~~~~~~i~~~A~~~------~pVLI~GE~GTGKe~lA~~IH~~S~r~~~pfv~inC~~l~e~lle 280 (526)
T TIGR02329 207 TRYRLDDLLGASAPMEQVRALVRLYARSD------ATVLILGESGTGKELVAQAIHQLSGRRDFPFVAINCGAIAESLLE 280 (526)
T ss_pred cccchhheeeCCHHHHHHHHHHHHHhCCC------CcEEEECCCCcCHHHHHHHHHHhcCcCCCCEEEeccccCChhHHH
Confidence 34668999999998888876665443332 259999999999999999998764 479999999987641111
Q ss_pred HH--H------------HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCC
Q 010366 311 AV--T------------KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSK 368 (512)
Q Consensus 311 ~~--~------------~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~ 368 (512)
+. . .-..+|+.+ .++.||||||+.| +...+..|..+|+.-. ....
T Consensus 281 seLFG~~~gaftga~~~~~~Gl~e~A----~gGTLfLdeI~~L---------p~~~Q~~Ll~~L~~~~~~r~g~~~~~~~ 347 (526)
T TIGR02329 281 AELFGYEEGAFTGARRGGRTGLIEAA----HRGTLFLDEIGEM---------PLPLQTRLLRVLEEREVVRVGGTEPVPV 347 (526)
T ss_pred HHhcCCcccccccccccccccchhhc----CCceEEecChHhC---------CHHHHHHHHHHHhcCcEEecCCCceeee
Confidence 00 0 001122222 2679999999997 5677777777775421 1123
Q ss_pred CEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhc
Q 010366 369 DIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 441 (512)
Q Consensus 369 ~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
++.+|++||.. ..+.+.+..|+ ..+.+..|+..+|.+-+...+..+..... .... .
T Consensus 348 dvRiIaat~~~l~~~v~~g~fr~dL~~rL-~~~~I~lPPLReR~eDI~~L~~~fl~~~~---------------~~~~-~ 410 (526)
T TIGR02329 348 DVRVVAATHCALTTAVQQGRFRRDLFYRL-SILRIALPPLRERPGDILPLAAEYLVQAA---------------AALR-L 410 (526)
T ss_pred cceEEeccCCCHHHHhhhcchhHHHHHhc-CCcEEeCCCchhchhHHHHHHHHHHHHHH---------------HHcC-C
Confidence 56899988763 24566777787 55666666666666544444433322100 0000 0
Q ss_pred CCCHHHHHH-------HHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 010366 442 GLTDDILME-------AAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 488 (512)
Q Consensus 442 ~~~~~~l~~-------la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~ 488 (512)
.++++.+.. |..+.+..+-+++++++..+...........|+.+++.
T Consensus 411 ~~~~~a~~~~~~~~~~L~~y~WPGNvrEL~nvier~~i~~~~~~~~~I~~~~l~ 464 (526)
T TIGR02329 411 PDSEAAAQVLAGVADPLQRYPWPGNVRELRNLVERLALELSAMPAGALTPDVLR 464 (526)
T ss_pred CCCHHHHHHhHHHHHHHHhCCCCchHHHHHHHHHHHHHhcccCCCCccCHHHhh
Confidence 266666666 88888777889999988654433221223567777654
No 171
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.44 E-value=5.3e-12 Score=137.23 Aligned_cols=226 Identities=14% Similarity=0.134 Sum_probs=136.7
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEE-EeCC---CCC-
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYAL-MTGG---DVA- 305 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~-v~~~---~~~- 305 (512)
.++.|..+++++|+++....+..++...... ..+...++|+||||||||++++.+|..++..+.. ++.. ...
T Consensus 76 eKyrP~~ldel~~~~~ki~~l~~~l~~~~~~---~~~~~illL~GP~GsGKTTl~~~la~~l~~~~~Ew~npv~~~~~~~ 152 (637)
T TIGR00602 76 EKYKPETQHELAVHKKKIEEVETWLKAQVLE---NAPKRILLITGPSGCGKSTTIKILSKELGIQVQEWSNPTLPDFQKN 152 (637)
T ss_pred HHhCCCCHHHhcCcHHHHHHHHHHHHhcccc---cCCCcEEEEECCCCCCHHHHHHHHHHHhhhHHHHHhhhhhhccccc
Confidence 3688899999999999999887765443221 2233459999999999999999999998765433 1111 000
Q ss_pred ------------CCchhHHHHHHHHHHHHHh---------cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHH-Hc
Q 010366 306 ------------PLGPQAVTKIHQLFDWAKK---------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLF-RT 363 (512)
Q Consensus 306 ------------~~~~~~~~~l~~lf~~a~~---------~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~-~~ 363 (512)
.........+..++..+.. .....||||||++.++... ...+..+|. ..
T Consensus 153 ~~~~~~s~~~~~~~~~s~~~~F~~fl~~a~~~~~~~g~~~~~~~~IILIDEiPn~~~r~---------~~~lq~lLr~~~ 223 (637)
T TIGR00602 153 DHKVTLSLESCFSNFQSQIEVFSEFLLRATNKLQMLGDDLMTDKKIILVEDLPNQFYRD---------TRALHEILRWKY 223 (637)
T ss_pred ccccchhhhhccccccchHHHHHHHHHHHHhhhcccccccCCceeEEEeecchhhchhh---------HHHHHHHHHHHh
Confidence 0111223444555554442 1235699999999875321 113444444 22
Q ss_pred CCCCCCEEEEEeeC-CCC--------------CCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcc
Q 010366 364 GDQSKDIVLALATN-RPG--------------DLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGL 426 (512)
Q Consensus 364 ~~~~~~viiI~ttN-~~~--------------~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~ 426 (512)
.+ ...+.+|++++ .+. .+.+++++ |+ .+|.|++++..+..+.|...+..........
T Consensus 224 ~e-~~~~pLI~I~TE~~~~~~~~~~~~f~~~~lL~~eLls~~rv-~~I~FnPia~t~l~K~L~rIl~~E~~~~~~~---- 297 (637)
T TIGR00602 224 VS-IGRCPLVFIITESLEGDNNQRRLLFPAETIMNKEILEEPRV-SNISFNPIAPTIMKKFLNRIVTIEAKKNGEK---- 297 (637)
T ss_pred hc-CCCceEEEEecCCccccccccccccchhcccCHhHhcccce-eEEEeCCCCHHHHHHHHHHHHHhhhhccccc----
Confidence 22 22333444333 111 13478887 66 6899999999999988888887632211000
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCC-------CCCccCHHHHHHHH
Q 010366 427 VHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGS-------ENCVLDPSLFREVV 491 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~-------~~~~it~e~~~~al 491 (512)
....+++.+..|+..+.| ||+.++..++.++... ....++..++.++.
T Consensus 298 -------------~~~p~~~~l~~I~~~s~G----DiRsAIn~LQf~~~~~g~~a~~~~~~~vs~~hv~~a~ 352 (637)
T TIGR00602 298 -------------IKVPKKTSVELLCQGCSG----DIRSAINSLQFSSSKSGSLPIKKRMSTKSDAHASKSK 352 (637)
T ss_pred -------------cccCCHHHHHHHHHhCCC----hHHHHHHHHHHHHhcCCccccccccccccHHHhhhcc
Confidence 001256788888876555 9999998888875433 12345555655554
No 172
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=99.44 E-value=3.1e-12 Score=130.37 Aligned_cols=149 Identities=22% Similarity=0.187 Sum_probs=111.0
Q ss_pred CCcccc-ChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------------
Q 010366 238 FGDVIL-HPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD--------------------- 295 (512)
Q Consensus 238 ~~~vvg-~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~--------------------- 295 (512)
|+.|+| ++.+++.+...+. .+..+..+||+||+|+|||++|+.+|+.+-++
T Consensus 4 ~~~i~~~q~~~~~~L~~~~~-------~~~l~ha~Lf~G~~G~gk~~~a~~la~~l~c~~~~~~~~cg~C~~c~~~~~~~ 76 (329)
T PRK08058 4 WEQLTALQPVVVKMLQNSIA-------KNRLSHAYLFEGAKGTGKKATALWLAKSLFCLERNGVEPCGTCTNCKRIDSGN 76 (329)
T ss_pred HHHHHhhHHHHHHHHHHHHH-------cCCCCceEEEECCCCCCHHHHHHHHHHHHCCCCCCCCCCCCcCHHHHHHhcCC
Confidence 688999 8888888866552 34444578999999999999999999986432
Q ss_pred ---eEEEeCCCCCCCchhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCC
Q 010366 296 ---YALMTGGDVAPLGPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD 369 (512)
Q Consensus 296 ---~~~v~~~~~~~~~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 369 (512)
+..+... -..-..+.++.+.+.+. ....+-|++|||+|.+ .....|.||..+++++.+
T Consensus 77 hpD~~~i~~~----~~~i~id~ir~l~~~~~~~~~~~~~kvviI~~a~~~------------~~~a~NaLLK~LEEPp~~ 140 (329)
T PRK08058 77 HPDVHLVAPD----GQSIKKDQIRYLKEEFSKSGVESNKKVYIIEHADKM------------TASAANSLLKFLEEPSGG 140 (329)
T ss_pred CCCEEEeccc----cccCCHHHHHHHHHHHhhCCcccCceEEEeehHhhh------------CHHHHHHHHHHhcCCCCC
Confidence 2222111 00112345555555444 2233569999999986 345678899999999999
Q ss_pred EEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHH
Q 010366 370 IVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKL 410 (512)
Q Consensus 370 viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~ 410 (512)
+++|++|+.+..+.|.++||+ ..++|++|+.++...++..
T Consensus 141 ~~~Il~t~~~~~ll~TIrSRc-~~i~~~~~~~~~~~~~L~~ 180 (329)
T PRK08058 141 TTAILLTENKHQILPTILSRC-QVVEFRPLPPESLIQRLQE 180 (329)
T ss_pred ceEEEEeCChHhCcHHHHhhc-eeeeCCCCCHHHHHHHHHH
Confidence 999999999999999999999 9999999999998777753
No 173
>PRK05022 anaerobic nitric oxide reductase transcription regulator; Provisional
Probab=99.44 E-value=5.8e-12 Score=135.91 Aligned_cols=204 Identities=19% Similarity=0.220 Sum_probs=135.9
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHH-
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAV- 312 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~- 312 (512)
.+.++||.+..+..+...+...+... .+|||+|++|||||++|++|.... +.||+.++|..+.....+..
T Consensus 185 ~~~~iig~s~~~~~~~~~i~~~a~~~------~pVlI~Ge~GtGK~~~A~~ih~~s~r~~~p~v~v~c~~~~~~~~e~~l 258 (509)
T PRK05022 185 KEGEMIGQSPAMQQLKKEIEVVAASD------LNVLILGETGVGKELVARAIHAASPRADKPLVYLNCAALPESLAESEL 258 (509)
T ss_pred cCCceeecCHHHHHHHHHHHHHhCCC------CcEEEECCCCccHHHHHHHHHHhCCcCCCCeEEEEcccCChHHHHHHh
Confidence 57899999999888877665554332 259999999999999999998875 47999999998764111100
Q ss_pred -HH-----------HHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEE
Q 010366 313 -TK-----------IHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVL 372 (512)
Q Consensus 313 -~~-----------l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~vii 372 (512)
.. -...|.. ..+++||||||+.| +...+..|..+++.-. ....++.|
T Consensus 259 fG~~~g~~~ga~~~~~g~~~~----a~gGtL~ldeI~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~Ri 325 (509)
T PRK05022 259 FGHVKGAFTGAISNRSGKFEL----ADGGTLFLDEIGEL---------PLALQAKLLRVLQYGEIQRVGSDRSLRVDVRV 325 (509)
T ss_pred cCccccccCCCcccCCcchhh----cCCCEEEecChhhC---------CHHHHHHHHHHHhcCCEeeCCCCcceecceEE
Confidence 00 0012222 23689999999997 5566666666665421 12246899
Q ss_pred EEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCH
Q 010366 373 ALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 445 (512)
Q Consensus 373 I~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
|++||.. ..+.+.+..|+ ..+.+..|+..+|..-+...+..+..... . ..+.....+++
T Consensus 326 I~~t~~~l~~~~~~~~f~~dL~~rl-~~~~i~lPpLreR~eDI~~L~~~fl~~~~------------~-~~~~~~~~~s~ 391 (509)
T PRK05022 326 IAATNRDLREEVRAGRFRADLYHRL-SVFPLSVPPLRERGDDVLLLAGYFLEQNR------------A-RLGLRSLRLSP 391 (509)
T ss_pred EEecCCCHHHHHHcCCccHHHHhcc-cccEeeCCCchhchhhHHHHHHHHHHHHH------------H-HcCCCCCCCCH
Confidence 9999863 45788888888 55667777777766544443333221100 0 00111134899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 010366 446 DILMEAAAKTEGFSGREIAKLMASVQAA 473 (512)
Q Consensus 446 ~~l~~la~~t~g~s~~dI~~lv~~~~aa 473 (512)
+.+..|..+.+..+.+++++++..+...
T Consensus 392 ~a~~~L~~y~WPGNvrEL~~~i~ra~~~ 419 (509)
T PRK05022 392 AAQAALLAYDWPGNVRELEHVISRAALL 419 (509)
T ss_pred HHHHHHHhCCCCCcHHHHHHHHHHHHHh
Confidence 9999999998888999999998655443
No 174
>KOG2035 consensus Replication factor C, subunit RFC3 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.44 E-value=9.8e-12 Score=118.68 Aligned_cols=184 Identities=23% Similarity=0.303 Sum_probs=131.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 294 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~----------------- 294 (512)
++.+.+|+.+++..+....+..+. .....| |+++|||+|+||-|.+.++-+++..
T Consensus 6 kyrpksl~~l~~~~e~~~~Lksl~------~~~d~P--Hll~yGPSGaGKKTrimclL~elYG~gveklki~~~t~~tpS 77 (351)
T KOG2035|consen 6 KYRPKSLDELIYHEELANLLKSLS------STGDFP--HLLVYGPSGAGKKTRIMCLLRELYGVGVEKLKIETRTFTTPS 77 (351)
T ss_pred hcCcchhhhcccHHHHHHHHHHhc------ccCCCC--eEEEECCCCCCchhhHHHHHHHHhCCCchheeeeeEEEecCC
Confidence 466777888988888877775543 122234 8999999999999999999888621
Q ss_pred ------------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh--------cCCCcEEEEccchhhhhhcccCCCCHHHHH
Q 010366 295 ------------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK--------SKRGLLLFIDEADAFLCERNKTYMSEAQRS 354 (512)
Q Consensus 295 ------------~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~--------~~~~~vl~lDEid~l~~~~~~~~~~~~~~~ 354 (512)
..+.++.++...++... +.+++..... .++..||+|.|+|.|. ...+
T Consensus 78 ~kklEistvsS~yHlEitPSDaG~~DRvV---iQellKevAQt~qie~~~qr~fKvvvi~ead~LT---------~dAQ- 144 (351)
T KOG2035|consen 78 KKKLEISTVSSNYHLEITPSDAGNYDRVV---IQELLKEVAQTQQIETQGQRPFKVVVINEADELT---------RDAQ- 144 (351)
T ss_pred CceEEEEEecccceEEeChhhcCcccHHH---HHHHHHHHHhhcchhhccccceEEEEEechHhhh---------HHHH-
Confidence 12334455544443322 2233332221 2345699999999972 2333
Q ss_pred HHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhh
Q 010366 355 ALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSE 434 (512)
Q Consensus 355 ~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~ 434 (512)
..|-..++.+..++.+|+.+|..+.+-+++.||+ ..|.+|.|+.++...++...+.+....
T Consensus 145 --~aLRRTMEkYs~~~RlIl~cns~SriIepIrSRC-l~iRvpaps~eeI~~vl~~v~~kE~l~---------------- 205 (351)
T KOG2035|consen 145 --HALRRTMEKYSSNCRLILVCNSTSRIIEPIRSRC-LFIRVPAPSDEEITSVLSKVLKKEGLQ---------------- 205 (351)
T ss_pred --HHHHHHHHHHhcCceEEEEecCcccchhHHhhhe-eEEeCCCCCHHHHHHHHHHHHHHhccc----------------
Confidence 3344444557889999999999999999999999 999999999999999999998775433
Q ss_pred hhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHH
Q 010366 435 QQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM 467 (512)
Q Consensus 435 ~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv 467 (512)
++++.+..+|+.+.| +++..+
T Consensus 206 --------lp~~~l~rIa~kS~~----nLRrAl 226 (351)
T KOG2035|consen 206 --------LPKELLKRIAEKSNR----NLRRAL 226 (351)
T ss_pred --------CcHHHHHHHHHHhcc----cHHHHH
Confidence 778899999999866 454444
No 175
>PRK11608 pspF phage shock protein operon transcriptional activator; Provisional
Probab=99.44 E-value=4.9e-12 Score=128.81 Aligned_cols=196 Identities=16% Similarity=0.146 Sum_probs=130.9
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHH
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTK 314 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~ 314 (512)
|++++|.+.....+.+.+...+.. +. +|||+|++||||+++|+++.... +.||+.++|..+... .....
T Consensus 5 ~~~liG~S~~~~~~~~~i~~~a~~---~~---pVlI~GE~GtGK~~lA~~iH~~s~r~~~pfv~v~c~~~~~~--~~~~~ 76 (326)
T PRK11608 5 KDNLLGEANSFLEVLEQVSRLAPL---DK---PVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNEN--LLDSE 76 (326)
T ss_pred cCccEECCHHHHHHHHHHHHHhCC---CC---CEEEECCCCCcHHHHHHHHHHhCCccCCCeEEEeCCCCCHH--HHHHH
Confidence 688999999888887666555422 22 49999999999999999997665 368999999987531 00111
Q ss_pred H---------------HHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEE
Q 010366 315 I---------------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIV 371 (512)
Q Consensus 315 l---------------~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~vi 371 (512)
+ ...+.. ..+++|||||++.| +...+..|..+++.-. ....++.
T Consensus 77 lfg~~~~~~~g~~~~~~g~l~~----a~gGtL~l~~i~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~R 143 (326)
T PRK11608 77 LFGHEAGAFTGAQKRHPGRFER----ADGGTLFLDELATA---------PMLVQEKLLRVIEYGELERVGGSQPLQVNVR 143 (326)
T ss_pred HccccccccCCcccccCCchhc----cCCCeEEeCChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeccEE
Confidence 0 111222 23689999999997 5566666766665421 1123688
Q ss_pred EEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhh-
Q 010366 372 LALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIE- 439 (512)
Q Consensus 372 iI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~- 439 (512)
||+||+.. ..+.+.+..|| ..+.+..|+..+|.. ++..++..+.... +..
T Consensus 144 iI~~s~~~l~~l~~~g~f~~dL~~~l-~~~~i~lPpLReR~eDI~~L~~~fl~~~~~~~-----------------~~~~ 205 (326)
T PRK11608 144 LVCATNADLPAMVAEGKFRADLLDRL-AFDVVQLPPLRERQSDIMLMAEHFAIQMCREL-----------------GLPL 205 (326)
T ss_pred EEEeCchhHHHHHHcCCchHHHHHhc-CCCEEECCChhhhhhhHHHHHHHHHHHHHHHh-----------------CCCC
Confidence 99988763 46778899899 445555566666655 4444444332110 111
Q ss_pred hcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010366 440 IKGLTDDILMEAAAKTEGFSGREIAKLMASVQA 472 (512)
Q Consensus 440 ~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~a 472 (512)
+..++++.+..|..+.+..+-+++++++..+..
T Consensus 206 ~~~~s~~al~~L~~y~WPGNvrEL~~vl~~a~~ 238 (326)
T PRK11608 206 FPGFTERARETLLNYRWPGNIRELKNVVERSVY 238 (326)
T ss_pred CCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHH
Confidence 124899999999999888888999998865433
No 176
>PF07724 AAA_2: AAA domain (Cdc48 subfamily); InterPro: IPR013093 ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of ATPase AAA-2 domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. Some of these ATPases function as a chaperone subunit of a proteasome-like degradation complex. This ATPase family includes some proteins not detected by IPR003959 from INTERPRO.; GO: 0005524 ATP binding; PDB: 1R6B_X 1KSF_X 3PXI_C 1KYI_T 1G3I_S 1OFH_B 1OFI_A 1G41_A 1IM2_A 1HQY_E ....
Probab=99.43 E-value=9.8e-14 Score=127.85 Aligned_cols=111 Identities=21% Similarity=0.275 Sum_probs=69.8
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCC----CeEEEeCCCCCCCchhHHHHHHHHHHHH---HhcCCCcEEEEccchhh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGL----DYALMTGGDVAPLGPQAVTKIHQLFDWA---KKSKRGLLLFIDEADAF 339 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~----~~~~v~~~~~~~~~~~~~~~l~~lf~~a---~~~~~~~vl~lDEid~l 339 (512)
|..++||+||+|||||.+|+++|..+.. +++.++++.+.. +.+....+..+...+ .....++||||||||++
T Consensus 2 p~~~~ll~GpsGvGKT~la~~la~~l~~~~~~~~~~~d~s~~~~-~~~~~~~~~~l~~~~~~~v~~~~~gVVllDEidKa 80 (171)
T PF07724_consen 2 PKSNFLLAGPSGVGKTELAKALAELLFVGSERPLIRIDMSEYSE-GDDVESSVSKLLGSPPGYVGAEEGGVVLLDEIDKA 80 (171)
T ss_dssp -SEEEEEESSTTSSHHHHHHHHHHHHT-SSCCEEEEEEGGGHCS-HHHCSCHCHHHHHHTTCHHHHHHHTEEEEETGGGC
T ss_pred CEEEEEEECCCCCCHHHHHHHHHHHhccCCccchHHHhhhcccc-cchHHhhhhhhhhcccceeeccchhhhhhHHHhhc
Confidence 5568999999999999999999999996 999999998876 111111111122111 01112459999999998
Q ss_pred hhhcccCCCCHHHHHHHHHHHHHcC------C-----CCCCEEEEEeeCCC
Q 010366 340 LCERNKTYMSEAQRSALNALLFRTG------D-----QSKDIVLALATNRP 379 (512)
Q Consensus 340 ~~~~~~~~~~~~~~~~l~~ll~~~~------~-----~~~~viiI~ttN~~ 379 (512)
.+.. .......-..+.+.||+.++ . +..+++||+|+|..
T Consensus 81 ~~~~-~~~~~v~~~~V~~~LL~~le~g~~~d~~g~~vd~~n~ifI~Tsn~~ 130 (171)
T PF07724_consen 81 HPSN-SGGADVSGEGVQNSLLQLLEGGTLTDSYGRTVDTSNIIFIMTSNFG 130 (171)
T ss_dssp SHTT-TTCSHHHHHHHHHHHHHHHHHSEEEETTCCEEEGTTEEEEEEESSS
T ss_pred cccc-cccchhhHHHHHHHHHHHhcccceecccceEEEeCCceEEEecccc
Confidence 6541 11111122245555555442 1 34689999999974
No 177
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=99.43 E-value=4e-12 Score=112.52 Aligned_cols=121 Identities=36% Similarity=0.465 Sum_probs=81.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHH---HHHHHHHHhcCCCcEEEEccchhhhhh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKI---HQLFDWAKKSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l---~~lf~~a~~~~~~~vl~lDEid~l~~~ 342 (512)
.+++|+||||||||++++.++..+ +.+++++++.............. ............+.+|+|||++.+
T Consensus 20 ~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lilDe~~~~--- 96 (151)
T cd00009 20 KNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASDLLEGLVVAELFGHFLVRLLFELAEKAKPGVLFIDEIDSL--- 96 (151)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhhhhhhhHHHHHhhhhhHhHHHHhhccCCCeEEEEeChhhh---
Confidence 479999999999999999999998 88899998877554221111000 111122222344789999999986
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCC---CCCEEEEEeeCCCC--CCCHHHHccccceeecCC
Q 010366 343 RNKTYMSEAQRSALNALLFRTGDQ---SKDIVLALATNRPG--DLDSAVADRIDEVLEFPL 398 (512)
Q Consensus 343 ~~~~~~~~~~~~~l~~ll~~~~~~---~~~viiI~ttN~~~--~l~~al~~R~~~~i~~~~ 398 (512)
.......+..++...... ..++.+|+++|... .+++.+.+||+..+.+++
T Consensus 97 ------~~~~~~~~~~~i~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~r~~~~i~~~~ 151 (151)
T cd00009 97 ------SRGAQNALLRVLETLNDLRIDRENVRVIGATNRPLLGDLDRALYDRLDIRIVIPL 151 (151)
T ss_pred ------hHHHHHHHHHHHHhcCceeccCCCeEEEEecCccccCCcChhHHhhhccEeecCC
Confidence 112333444444444321 46788999998877 788999999988777763
No 178
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=99.42 E-value=6.2e-12 Score=139.63 Aligned_cols=219 Identities=15% Similarity=0.171 Sum_probs=141.9
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---CCeEEEeCCCCCCCchhH
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~~~~~~~~~~~~ 311 (512)
..+|++++|.+.....+...+...+.. +. +|||+|++||||+++|+++..... .||+.++|..++.....
T Consensus 321 ~~~~~~l~g~s~~~~~~~~~~~~~a~~---~~---pvli~Ge~GtGK~~~A~~ih~~s~r~~~pfv~vnc~~~~~~~~~- 393 (638)
T PRK11388 321 SHTFDHMPQDSPQMRRLIHFGRQAAKS---SF---PVLLCGEEGVGKALLAQAIHNESERAAGPYIAVNCQLYPDEALA- 393 (638)
T ss_pred cccccceEECCHHHHHHHHHHHHHhCc---CC---CEEEECCCCcCHHHHHHHHHHhCCccCCCeEEEECCCCChHHHH-
Confidence 457999999998888776655544332 22 499999999999999999988753 79999999987641110
Q ss_pred HHHHHHHHHHH-----------HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC-----C---CCCCEEE
Q 010366 312 VTKIHQLFDWA-----------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVL 372 (512)
Q Consensus 312 ~~~l~~lf~~a-----------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~vii 372 (512)
..+|... .....+++||||||+.+ +...+..|..+++.-. . ...++.|
T Consensus 394 ----~elfg~~~~~~~~~~~g~~~~a~~GtL~ldei~~l---------~~~~Q~~Ll~~l~~~~~~~~~~~~~~~~~~ri 460 (638)
T PRK11388 394 ----EEFLGSDRTDSENGRLSKFELAHGGTLFLEKVEYL---------SPELQSALLQVLKTGVITRLDSRRLIPVDVRV 460 (638)
T ss_pred ----HHhcCCCCcCccCCCCCceeECCCCEEEEcChhhC---------CHHHHHHHHHHHhcCcEEeCCCCceEEeeEEE
Confidence 1122110 01123789999999997 5566767777664321 0 1126789
Q ss_pred EEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCH
Q 010366 373 ALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 445 (512)
Q Consensus 373 I~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
|+||+.. ..+.+.+.-|+ ..+.+..|+..+|..-+...+..+.... .. ..+.. ..+++
T Consensus 461 I~~t~~~l~~~~~~~~f~~dL~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~------------~~-~~~~~-~~~s~ 525 (638)
T PRK11388 461 IATTTADLAMLVEQNRFSRQLYYAL-HAFEITIPPLRMRREDIPALVNNKLRSL------------EK-RFSTR-LKIDD 525 (638)
T ss_pred EEeccCCHHHHHhcCCChHHHhhhh-ceeEEeCCChhhhhhHHHHHHHHHHHHH------------HH-HhCCC-CCcCH
Confidence 9998863 46677777788 6677777777777654444443332110 00 00001 13899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 446 DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 446 ~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+++..|..+.+..+.+++.+++..+... .....|+.+++...+
T Consensus 526 ~a~~~L~~y~WPGNvreL~~~l~~~~~~---~~~~~i~~~~lp~~~ 568 (638)
T PRK11388 526 DALARLVSYRWPGNDFELRSVIENLALS---SDNGRIRLSDLPEHL 568 (638)
T ss_pred HHHHHHHcCCCCChHHHHHHHHHHHHHh---CCCCeecHHHCchhh
Confidence 9999999998777888888888644332 233567766665443
No 179
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=99.42 E-value=1.9e-11 Score=120.18 Aligned_cols=222 Identities=21% Similarity=0.235 Sum_probs=144.1
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---------CCeEEEeCCCCCCCc-
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------LDYALMTGGDVAPLG- 308 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---------~~~~~v~~~~~~~~~- 308 (512)
+..||.+.+.+.+..+......+.....| ++||+|++|.|||++++.++.... .|++++.+..-++..
T Consensus 34 ~rWIgY~~A~~~L~~L~~Ll~~P~~~Rmp--~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~ 111 (302)
T PF05621_consen 34 DRWIGYPRAKEALDRLEELLEYPKRHRMP--NLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERR 111 (302)
T ss_pred CCeecCHHHHHHHHHHHHHHhCCcccCCC--ceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHH
Confidence 67899999999998888888877776666 899999999999999999987753 467777654432211
Q ss_pred ---------------hhHHHH-HHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC-CCCCCEE
Q 010366 309 ---------------PQAVTK-IHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIV 371 (512)
Q Consensus 309 ---------------~~~~~~-l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~vi 371 (512)
...... -..+....+..+ .-+|+|||++.++..+. ...+.++| +|..++ +..-.++
T Consensus 112 ~Y~~IL~~lgaP~~~~~~~~~~~~~~~~llr~~~-vrmLIIDE~H~lLaGs~-----~~qr~~Ln-~LK~L~NeL~ipiV 184 (302)
T PF05621_consen 112 FYSAILEALGAPYRPRDRVAKLEQQVLRLLRRLG-VRMLIIDEFHNLLAGSY-----RKQREFLN-ALKFLGNELQIPIV 184 (302)
T ss_pred HHHHHHHHhCcccCCCCCHHHHHHHHHHHHHHcC-CcEEEeechHHHhcccH-----HHHHHHHH-HHHHHhhccCCCeE
Confidence 011111 122223333333 66999999999865432 23344444 444443 3344556
Q ss_pred EEEeeCC--CCCCCHHHHccccceeecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHH
Q 010366 372 LALATNR--PGDLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDIL 448 (512)
Q Consensus 372 iI~ttN~--~~~l~~al~~R~~~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l 448 (512)
.++|... .-.-|+.+-+|| ..+.+|.... ++...++..+-..+..... ....+++..
T Consensus 185 ~vGt~~A~~al~~D~QLa~RF-~~~~Lp~W~~d~ef~~LL~s~e~~LPLr~~-------------------S~l~~~~la 244 (302)
T PF05621_consen 185 GVGTREAYRALRTDPQLASRF-EPFELPRWELDEEFRRLLASFERALPLRKP-------------------SNLASPELA 244 (302)
T ss_pred EeccHHHHHHhccCHHHHhcc-CCccCCCCCCCcHHHHHHHHHHHhCCCCCC-------------------CCCCCHHHH
Confidence 5665432 234578999999 6666665543 4455565555444322111 112345566
Q ss_pred HHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHH
Q 010366 449 MEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREV 490 (512)
Q Consensus 449 ~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~a 490 (512)
..|-..|.|..| ++..++..+...+..++...||.++++.+
T Consensus 245 ~~i~~~s~G~iG-~l~~ll~~aA~~AI~sG~E~It~~~l~~~ 285 (302)
T PF05621_consen 245 RRIHERSEGLIG-ELSRLLNAAAIAAIRSGEERITREILDKI 285 (302)
T ss_pred HHHHHHcCCchH-HHHHHHHHHHHHHHhcCCceecHHHHhhC
Confidence 788889988766 88888877777777788899999998873
No 180
>TIGR02915 PEP_resp_reg putative PEP-CTERM system response regulator. Members of this protein family share full-length homology with (but do not include) the acetoacetate metabolism regulatory protein AtoC. These proteins have a Fis family DNA binding sequence (pfam02954), a response regulator receiver domain (pfam00072), and sigma-54 interaction domain (pfam00158).
Probab=99.41 E-value=2.8e-12 Score=136.51 Aligned_cols=294 Identities=20% Similarity=0.215 Sum_probs=176.3
Q ss_pred HhhhhhHHhhHHHHHHH-HHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhC
Q 010366 119 LAEDVNRRMLVDRANAE-REKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILG 197 (512)
Q Consensus 119 ~~~d~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 197 (512)
...|+.+.++.++.... -...++.+.......+.....+++........+..+..++.+++.+|.....+...|...+.
T Consensus 39 ~~~dlvllD~~mp~~~~~~~~g~~~l~~i~~~~~~~piI~lt~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~~~ 118 (445)
T TIGR02915 39 HEPAVVTLDLGLPPDADGASEGLAALQQILAIAPDTKVIVITGNDDRENAVKAIGLGAYDFYQKPIDPDVLKLIVDRAFH 118 (445)
T ss_pred CCCCEEEEeCCCCCCcCCCCCHHHHHHHHHhhCCCCCEEEEecCCCHHHHHHHHHCCccEEEeCCCCHHHHHHHHhhhhh
Confidence 34566666655442100 01233334333333232233344555555566667777788899999888887777776654
Q ss_pred CCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCC
Q 010366 198 QPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPP 277 (512)
Q Consensus 198 ~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~Gpp 277 (512)
...+..+. ..+. . ......+..++|.......+...+..... .+ .+++|+|++
T Consensus 119 ~~~l~~~~---------------~~l~---~---~~~~~~~~~lig~s~~~~~l~~~i~~~a~---~~---~~vli~Ge~ 171 (445)
T TIGR02915 119 LYTLETEN---------------RRLQ---S---ALGGTALRGLITSSPGMQKICRTIEKIAP---SD---ITVLLLGES 171 (445)
T ss_pred hhhhHHHH---------------HHhh---h---hhhcccccceeecCHHHHHHHHHHHHHhC---CC---CCEEEECCC
Confidence 32211100 0000 0 00112356789988777777654443321 12 359999999
Q ss_pred CCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHHHHHH--------------HhcCCCcEEEEccchhhh
Q 010366 278 GTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWA--------------KKSKRGLLLFIDEADAFL 340 (512)
Q Consensus 278 GtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a--------------~~~~~~~vl~lDEid~l~ 340 (512)
||||+++|+++.... +.||+.++|..+..... . ..+|... .....+++|||||++.|
T Consensus 172 GtGK~~lA~~ih~~s~~~~~~~v~v~c~~~~~~~~--~---~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l- 245 (445)
T TIGR02915 172 GTGKEVLARALHQLSDRKDKRFVAINCAAIPENLL--E---SELFGYEKGAFTGAVKQTLGKIEYAHGGTLFLDEIGDL- 245 (445)
T ss_pred CcCHHHHHHHHHHhCCcCCCCeEEEECCCCChHHH--H---HHhcCCCCCCcCCCccCCCCceeECCCCEEEEechhhC-
Confidence 999999999998765 46899999988753110 0 1111100 00123689999999997
Q ss_pred hhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHH
Q 010366 341 CERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERF 405 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~ 405 (512)
+...+..|..+++.-. ....++.||+||+.. ..+.+.+..|+ ..+.+..|+..+|.
T Consensus 246 --------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~lPpLr~R~ 316 (445)
T TIGR02915 246 --------PLNLQAKLLRFLQERVIERLGGREEIPVDVRIVCATNQDLKRMIAEGTFREDLFYRI-AEISITIPPLRSRD 316 (445)
T ss_pred --------CHHHHHHHHHHHhhCeEEeCCCCceeeeceEEEEecCCCHHHHHHcCCccHHHHHHh-ccceecCCCchhch
Confidence 5566666666665421 112368899998764 46778888888 56677777777777
Q ss_pred HHHH----HHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010366 406 KLLK----LYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQ 471 (512)
Q Consensus 406 ~Il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~ 471 (512)
+-+. .++..+.... +.....++++.+..|..+.+..+.+++++++..+.
T Consensus 317 ~Di~~l~~~~l~~~~~~~-----------------~~~~~~~~~~a~~~L~~~~wpgNvreL~~~i~~a~ 369 (445)
T TIGR02915 317 GDAVLLANAFLERFAREL-----------------KRKTKGFTDDALRALEAHAWPGNVRELENKVKRAV 369 (445)
T ss_pred hhHHHHHHHHHHHHHHHh-----------------CCCCCCCCHHHHHHHHhCCCCChHHHHHHHHHHHH
Confidence 6444 4444332110 11123489999999999988778899998886444
No 181
>COG0714 MoxR-like ATPases [General function prediction only]
Probab=99.41 E-value=7.9e-12 Score=127.68 Aligned_cols=240 Identities=19% Similarity=0.160 Sum_probs=139.4
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC----CchhHHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----LGPQAVTK 314 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~----~~~~~~~~ 314 (512)
..++|.++....+...+. ..+++||-||||||||++|+.+|..++.+|+.+.|..... .|......
T Consensus 24 ~~~~g~~~~~~~~l~a~~----------~~~~vll~G~PG~gKT~la~~lA~~l~~~~~~i~~t~~l~p~d~~G~~~~~~ 93 (329)
T COG0714 24 KVVVGDEEVIELALLALL----------AGGHVLLEGPPGVGKTLLARALARALGLPFVRIQCTPDLLPSDLLGTYAYAA 93 (329)
T ss_pred CeeeccHHHHHHHHHHHH----------cCCCEEEECCCCccHHHHHHHHHHHhCCCeEEEecCCCCCHHHhcCchhHhh
Confidence 447887777666633221 1146999999999999999999999999999999875432 11111111
Q ss_pred H---HHHHHHHHhcCCCc---EEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc----CC-----CCCCEEEEEeeC--
Q 010366 315 I---HQLFDWAKKSKRGL---LLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----GD-----QSKDIVLALATN-- 377 (512)
Q Consensus 315 l---~~lf~~a~~~~~~~---vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~~-----~~~~viiI~ttN-- 377 (512)
. ...+.+...--... ++|+|||+.. ....+.+|...++.. .. .+..+++|+|+|
T Consensus 94 ~~~~~~~~~~~~gpl~~~~~~ill~DEInra---------~p~~q~aLl~~l~e~~vtv~~~~~~~~~~~f~viaT~Np~ 164 (329)
T COG0714 94 LLLEPGEFRFVPGPLFAAVRVILLLDEINRA---------PPEVQNALLEALEERQVTVPGLTTIRLPPPFIVIATQNPG 164 (329)
T ss_pred hhccCCeEEEecCCcccccceEEEEeccccC---------CHHHHHHHHHHHhCcEEEECCcCCcCCCCCCEEEEccCcc
Confidence 1 11111111000113 9999999985 445566666666541 11 235688899999
Q ss_pred ---CCCCCCHHHHccccceeecCCCCHH-HHHHHHHHHHHHHhhhhCCCCCcchhh-hhhhhhhhhhhcCCCHHHHHHHH
Q 010366 378 ---RPGDLDSAVADRIDEVLEFPLPGQE-ERFKLLKLYLDKYIAQAGSRKPGLVHR-LFKSEQQKIEIKGLTDDILMEAA 452 (512)
Q Consensus 378 ---~~~~l~~al~~R~~~~i~~~~p~~~-er~~Il~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~l~~la 452 (512)
....+++++++||...+++++|+.+ +...++...............+..+.. ........+.-..++++...++.
T Consensus 165 e~~g~~~l~eA~ldRf~~~~~v~yp~~~~e~~~i~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 244 (329)
T COG0714 165 EYEGTYPLPEALLDRFLLRIYVDYPDSEEEERIILARVGGVDELDLESLVKPVLSDEELLRLQKEVKKVPVSDEVIDYIV 244 (329)
T ss_pred ccCCCcCCCHHHHhhEEEEEecCCCCchHHHHHHHHhCccccccccchhhhhhhCHHHHHHHHhhhccCCchHHHHHHHH
Confidence 4557899999999999999999444 444444433321100000000011100 00011111112235555555543
Q ss_pred HH---c-------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 453 AK---T-------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 453 ~~---t-------~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
.. + .|-|++....++..+.+.+..........+++.........+
T Consensus 245 ~l~~~~~~~~~~~~~~s~r~~~~~~~~~~~~a~~~~~~~~~~~dv~~~~~~~~~~ 299 (329)
T COG0714 245 TLVAALREAPDVALGASPRASLALLAALRALALLDGRDAVIPDDVKALAEPALAH 299 (329)
T ss_pred HHHHhhccccchhccCCchhHHHHHHHHHhhhhhcCccccCHHHHHHHhhhhhhh
Confidence 33 1 244678888888888777776666778888877776655544
No 182
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.41 E-value=7.7e-12 Score=121.54 Aligned_cols=221 Identities=17% Similarity=0.254 Sum_probs=135.0
Q ss_pred CccccChHHHHHHHH-HHHHhhch----hhcC--CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC--Cch
Q 010366 239 GDVILHPSLQKRIRQ-LSGATANT----KAHN--APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGP 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~-~~~~~~~~----~~~~--~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~--~~~ 309 (512)
+-|||++.+++.+.- ..+..... .... ..-.++||.||+|||||.||+.||+.++.||..-++..+.. +.+
T Consensus 61 ~YVIGQe~AKKvLsVAVYNHYKRl~~~~~~~dvEL~KSNILLiGPTGsGKTlLAqTLAk~LnVPFaiADATtLTEAGYVG 140 (408)
T COG1219 61 EYVIGQEQAKKVLSVAVYNHYKRLNNKEDNDDVELSKSNILLIGPTGSGKTLLAQTLAKILNVPFAIADATTLTEAGYVG 140 (408)
T ss_pred hheecchhhhceeeeeehhHHHHHhccCCCCceeeeeccEEEECCCCCcHHHHHHHHHHHhCCCeeeccccchhhccccc
Confidence 558999999987732 11111111 1111 12237999999999999999999999999999998887754 333
Q ss_pred h-HHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCC-----CCHHHHHHHHHHHHHcC-C--------------
Q 010366 310 Q-AVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTY-----MSEAQRSALNALLFRTG-D-------------- 365 (512)
Q Consensus 310 ~-~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~-----~~~~~~~~l~~ll~~~~-~-------------- 365 (512)
+ .+..+..++..+. .....+||+|||||++..+..+.+ ..+..++.|..++...- +
T Consensus 141 EDVENillkLlqaadydV~rAerGIIyIDEIDKIarkSeN~SITRDVSGEGVQQALLKiiEGTvasVPPqGGRKHP~Qe~ 220 (408)
T COG1219 141 EDVENILLKLLQAADYDVERAERGIIYIDEIDKIARKSENPSITRDVSGEGVQQALLKIIEGTVASVPPQGGRKHPQQEF 220 (408)
T ss_pred hhHHHHHHHHHHHcccCHHHHhCCeEEEechhhhhccCCCCCcccccCchHHHHHHHHHHcCceeccCCCCCCCCCccce
Confidence 3 3344445544332 112357999999999988775433 13455566666554321 0
Q ss_pred ---CCCCEEEEEeeCC---------------------------------------CC-----CCCHHHHccccceeecCC
Q 010366 366 ---QSKDIVLALATNR---------------------------------------PG-----DLDSAVADRIDEVLEFPL 398 (512)
Q Consensus 366 ---~~~~viiI~ttN~---------------------------------------~~-----~l~~al~~R~~~~i~~~~ 398 (512)
+..|++||+..-- |+ .+-|+|..|++.+..+..
T Consensus 221 iqvDT~NILFIcgGAF~GlekiI~~R~~~~~iGF~a~~~~~~~~~~~~~~l~~vepeDLvkFGLIPEfIGRlPvia~L~~ 300 (408)
T COG1219 221 IQVDTSNILFICGGAFAGLEKIIKKRLGKKGIGFGAEVKSKSKKKEEGELLKQVEPEDLVKFGLIPEFIGRLPVIATLEE 300 (408)
T ss_pred EEEcccceeEEeccccccHHHHHHHhccCCcccccccccchhhhhhHHHHHHhcChHHHHHcCCcHHHhcccceeeehhh
Confidence 3345666653110 00 234889999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCCcHHHHHHHHHHH
Q 010366 399 PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLMASV 470 (512)
Q Consensus 399 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~s~~dI~~lv~~~ 470 (512)
.+.+....|+..--+.+..+ ..++++-+...+ .++++++..+|... .+--.|-++.++..+
T Consensus 301 Lde~aLv~ILtePkNAlvKQ--------Yq~Lf~~d~V~L---~F~~~AL~~IA~~A~~rkTGARGLRsI~E~~ 363 (408)
T COG1219 301 LDEDALVQILTEPKNALVKQ--------YQKLFEMDGVEL---EFTEEALKAIAKKAIERKTGARGLRSIIEEL 363 (408)
T ss_pred cCHHHHHHHHhcccHHHHHH--------HHHHhcccCceE---EEcHHHHHHHHHHHHHhccchhHHHHHHHHH
Confidence 99999999885322222111 111222112222 27888999998873 222256677777433
No 183
>PHA02244 ATPase-like protein
Probab=99.40 E-value=3.8e-12 Score=128.56 Aligned_cols=123 Identities=25% Similarity=0.284 Sum_probs=84.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCC----CCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhccc
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGD----VAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNK 345 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~----~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~ 345 (512)
++||+||||||||++|+++|..++.||+.++... +.............-+..+. ..+++|||||++.+
T Consensus 121 PVLL~GppGtGKTtLA~aLA~~lg~pfv~In~l~d~~~L~G~i~~~g~~~dgpLl~A~--~~GgvLiLDEId~a------ 192 (383)
T PHA02244 121 PVFLKGGAGSGKNHIAEQIAEALDLDFYFMNAIMDEFELKGFIDANGKFHETPFYEAF--KKGGLFFIDEIDAS------ 192 (383)
T ss_pred CEEEECCCCCCHHHHHHHHHHHhCCCEEEEecChHHHhhcccccccccccchHHHHHh--hcCCEEEEeCcCcC------
Confidence 4999999999999999999999999999988421 11000000000011122222 34789999999986
Q ss_pred CCCCHHHHHHHHHHHHH-----cC---CCCCCEEEEEeeCCC-----------CCCCHHHHccccceeecCCCCHHHH
Q 010366 346 TYMSEAQRSALNALLFR-----TG---DQSKDIVLALATNRP-----------GDLDSAVADRIDEVLEFPLPGQEER 404 (512)
Q Consensus 346 ~~~~~~~~~~l~~ll~~-----~~---~~~~~viiI~ttN~~-----------~~l~~al~~R~~~~i~~~~p~~~er 404 (512)
+......|+.++.. .+ ....++.+|+|+|.+ ..+++++++|| ..|+|++|+..+.
T Consensus 193 ---~p~vq~~L~~lLd~r~l~l~g~~i~~h~~FRlIATsN~~~~G~~~~y~G~k~L~~AllDRF-v~I~~dyp~~~E~ 266 (383)
T PHA02244 193 ---IPEALIIINSAIANKFFDFADERVTAHEDFRVISAGNTLGKGADHIYVARNKIDGATLDRF-APIEFDYDEKIEH 266 (383)
T ss_pred ---CHHHHHHHHHHhccCeEEecCcEEecCCCEEEEEeeCCCccCcccccCCCcccCHHHHhhc-EEeeCCCCcHHHH
Confidence 44555666666642 11 134689999999973 46799999999 7899999984333
No 184
>COG1220 HslU ATP-dependent protease HslVU (ClpYQ), ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=6.1e-12 Score=123.07 Aligned_cols=156 Identities=19% Similarity=0.266 Sum_probs=94.2
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC----------CCCCEEEEEee----CCCCCCCHHHHcccccee
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVL 394 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~viiI~tt----N~~~~l~~al~~R~~~~i 394 (512)
+||||||||+++.+.+.++....-..+...+|-.++. ...+++||++. ..|+.|-|+|..||+..+
T Consensus 252 GIvFIDEIDKIa~~~~~g~~dvSREGVQRDlLPlvEGstV~TKyG~VkTdHILFIasGAFh~sKPSDLiPELQGRfPIRV 331 (444)
T COG1220 252 GIVFIDEIDKIAKRGGSGGPDVSREGVQRDLLPLVEGSTVSTKYGPVKTDHILFIASGAFHVAKPSDLIPELQGRFPIRV 331 (444)
T ss_pred CeEEEehhhHHHhcCCCCCCCcchhhhcccccccccCceeeccccccccceEEEEecCceecCChhhcChhhcCCCceEE
Confidence 4999999999988765332111122233344433321 34467888764 458999999999999999
Q ss_pred ecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc-------CCCcHHHHHHHH
Q 010366 395 EFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-------EGFSGREIAKLM 467 (512)
Q Consensus 395 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-------~g~s~~dI~~lv 467 (512)
++..++.++...||..--..+..+ ...+++.+...+. ++++.++.||... +..-.|-+.-++
T Consensus 332 EL~~Lt~~Df~rILtep~~sLikQ--------Y~aLlkTE~v~l~---FtddaI~~iAeiA~~vN~~~ENIGARRLhTvl 400 (444)
T COG1220 332 ELDALTKEDFERILTEPKASLIKQ--------YKALLKTEGVELE---FTDDAIKRIAEIAYQVNEKTENIGARRLHTVL 400 (444)
T ss_pred EcccCCHHHHHHHHcCcchHHHHH--------HHHHHhhcCeeEE---ecHHHHHHHHHHHHHhcccccchhHHHHHHHH
Confidence 999999999998875322222111 1123333333333 7888888888774 344455566555
Q ss_pred HHH-HHHHh-----CCCCCccCHHHHHHHHHHHH
Q 010366 468 ASV-QAAVY-----GSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 468 ~~~-~aa~~-----~~~~~~it~e~~~~al~~~~ 495 (512)
..+ .-..+ ....-.||.+-+.+-+....
T Consensus 401 ErlLediSFeA~d~~g~~v~Id~~yV~~~l~~l~ 434 (444)
T COG1220 401 ERLLEDISFEAPDMSGQKVTIDAEYVEEKLGDLV 434 (444)
T ss_pred HHHHHHhCccCCcCCCCeEEEcHHHHHHHHHHHh
Confidence 322 22222 22335678777777665543
No 185
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=99.40 E-value=5e-12 Score=128.56 Aligned_cols=150 Identities=28% Similarity=0.427 Sum_probs=107.7
Q ss_pred ccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC------------------------CC
Q 010366 240 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG------------------------LD 295 (512)
Q Consensus 240 ~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~------------------------~~ 295 (512)
++++.......+....... ...| ..+||+||||||||++|.++|+.+. .+
T Consensus 2 ~~~~~~~~~~~l~~~~~~~-----~~~~-halL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~~~~~~~~~~~~~d 75 (325)
T COG0470 2 ELVPWQEAVKRLLVQALES-----GRLP-HALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHCRSCKLIPAGNHPD 75 (325)
T ss_pred CcccchhHHHHHHHHHHhc-----CCCC-ceeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccchhhhhHHhhcCCCc
Confidence 4566666666654433211 1122 2499999999999999999999986 46
Q ss_pred eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEE
Q 010366 296 YALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 372 (512)
Q Consensus 296 ~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~vii 372 (512)
++.++.++..... .....++.+....... .+.-||+|||+|.+ .....+.++..+++++.+++|
T Consensus 76 ~lel~~s~~~~~~-i~~~~vr~~~~~~~~~~~~~~~kviiidead~m------------t~~A~nallk~lEep~~~~~~ 142 (325)
T COG0470 76 FLELNPSDLRKID-IIVEQVRELAEFLSESPLEGGYKVVIIDEADKL------------TEDAANALLKTLEEPPKNTRF 142 (325)
T ss_pred eEEecccccCCCc-chHHHHHHHHHHhccCCCCCCceEEEeCcHHHH------------hHHHHHHHHHHhccCCCCeEE
Confidence 7777777765432 1233444444433332 34679999999996 346778888888889999999
Q ss_pred EEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHH
Q 010366 373 ALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLK 409 (512)
Q Consensus 373 I~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~ 409 (512)
|++||.+..+-+.+.||+ ..+.|++|+........+
T Consensus 143 il~~n~~~~il~tI~SRc-~~i~f~~~~~~~~i~~~e 178 (325)
T COG0470 143 ILITNDPSKILPTIRSRC-QRIRFKPPSRLEAIAWLE 178 (325)
T ss_pred EEEcCChhhccchhhhcc-eeeecCCchHHHHHHHhh
Confidence 999999999999999999 999998877655554443
No 186
>TIGR00764 lon_rel lon-related putative ATP-dependent protease. Members of this family from Pyrococcus horikoshii and Pyrococcus abyssi each contain a predicted intein.
Probab=99.39 E-value=2.9e-11 Score=132.21 Aligned_cols=143 Identities=17% Similarity=0.165 Sum_probs=93.7
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC------------------CCCCCEEEEEeeCCC--CCCCHHHH
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------------------DQSKDIVLALATNRP--GDLDSAVA 387 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~~~viiI~ttN~~--~~l~~al~ 387 (512)
+++|||||++.| +...+..|..+|+.-. ..+.++.+|+++|.. ..++|.|+
T Consensus 218 gGtL~Ldei~~L---------~~~~q~~Ll~~L~~~~i~~~g~~e~~~~~~~~~~~ip~dvrvIa~~~~~~l~~l~~~l~ 288 (608)
T TIGR00764 218 KGVLYIDEIKTM---------PLEVQQYLLTALQDKKFPITGQSENSSGAMVRTEPVPCDFILVASGNLDDLEGMHPALR 288 (608)
T ss_pred CCEEEEEChHhC---------CHHHHHHHHHHHHhCcEEecCccccccccccCCCCCccceEEEEECCHHHHhhcCHHHH
Confidence 358888888886 3455556666664311 113368899999874 67999999
Q ss_pred cccc---ceeecCC---CCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC-----
Q 010366 388 DRID---EVLEFPL---PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE----- 456 (512)
Q Consensus 388 ~R~~---~~i~~~~---p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~----- 456 (512)
+||+ ..+.|+. ++.+.+..+++......... +. .+.++++.+..+.+...
T Consensus 289 ~rf~~y~v~v~~~~~~~~~~e~~~~~~~~i~~~~~r~-G~------------------l~~~s~~Av~~Li~~~~R~ag~ 349 (608)
T TIGR00764 289 SRIRGYGYEVYMKDTMPDTPENRDKLVQFVAQEVKKD-GR------------------IPHFTRDAVEEIVREAQRRAGR 349 (608)
T ss_pred HHhcCCeEEEEeeccCCCCHHHHHHHHHHHHHHHHHh-CC------------------CCcCCHHHHHHHHHHHHHHHhc
Confidence 9998 5566543 34556666655443332211 10 12377877777764321
Q ss_pred ----CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 457 ----GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 457 ----g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
..+.++|..+++.+...+...+...|+.+|+.+|++......
T Consensus 350 r~~lsl~~R~L~~llR~A~~iA~~~~~~~I~~ehV~~Ai~~~~~~~ 395 (608)
T TIGR00764 350 KDHLTLRLRELGGLVRAAGDIAKSSGKVYVTAEHVLKAKKLAKTLE 395 (608)
T ss_pred ccccCCCHHHHHHHHHHHHHHHHhcCCceecHHHHHHHHHHHHHHH
Confidence 245799999998876666666668999999999998876543
No 187
>smart00350 MCM minichromosome maintenance proteins.
Probab=99.39 E-value=8.7e-12 Score=134.32 Aligned_cols=247 Identities=14% Similarity=0.120 Sum_probs=146.5
Q ss_pred CCccccChHHHHHHHHHHHHhhch-hhcC---CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEE----eCCCCCC-Cc
Q 010366 238 FGDVILHPSLQKRIRQLSGATANT-KAHN---APFRNMLFYGPPGTGKTMAARELARKSGLDYALM----TGGDVAP-LG 308 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~-~~~~---~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v----~~~~~~~-~~ 308 (512)
.-.+.|++.++..+.-.+..-... ...+ ....++||+|+||||||++|++++.......+.. ++..+.. ..
T Consensus 202 ~p~i~G~~~~k~~l~l~l~gg~~~~~~~~~~~r~~~~vLL~G~pGtGKs~lar~l~~~~~r~~~~~~~~~~~~~l~~~~~ 281 (509)
T smart00350 202 APSIYGHEDIKKAILLLLFGGVHKNLPDGMKIRGDINILLLGDPGTAKSQLLKYVEKTAPRAVYTTGKGSSAVGLTAAVT 281 (509)
T ss_pred CccccCcHHHHHHHHHHHhCCCccccCCCccccccceEEEeCCCChhHHHHHHHHHHHcCcceEcCCCCCCcCCccccce
Confidence 356788888877663222110000 0001 1112799999999999999999999875432211 1111111 00
Q ss_pred hhH-HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc----C------CCCCCEEEEEeeC
Q 010366 309 PQA-VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----G------DQSKDIVLALATN 377 (512)
Q Consensus 309 ~~~-~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~------~~~~~viiI~ttN 377 (512)
... .... .+-.-+.....+++++|||++.+ +...+..|...+..- . ..+.++.||+|+|
T Consensus 282 ~~~~~g~~-~~~~G~l~~A~~Gil~iDEi~~l---------~~~~q~~L~e~me~~~i~i~k~G~~~~l~~~~~viAa~N 351 (509)
T smart00350 282 RDPETREF-TLEGGALVLADNGVCCIDEFDKM---------DDSDRTAIHEAMEQQTISIAKAGITTTLNARCSVLAAAN 351 (509)
T ss_pred EccCcceE-EecCccEEecCCCEEEEechhhC---------CHHHHHHHHHHHhcCEEEEEeCCEEEEecCCcEEEEEeC
Confidence 000 0000 00000011123679999999996 445566666655331 0 1235789999999
Q ss_pred CCC-------------CCCHHHHcccccee-ecCCCCHHHHHHHHHHHHHHHhhhhC----C----CCCcchhhhhhhhh
Q 010366 378 RPG-------------DLDSAVADRIDEVL-EFPLPGQEERFKLLKLYLDKYIAQAG----S----RKPGLVHRLFKSEQ 435 (512)
Q Consensus 378 ~~~-------------~l~~al~~R~~~~i-~~~~p~~~er~~Il~~~l~~~~~~~~----~----~~~~~~~~~~~~~~ 435 (512)
... .+++++++|||.++ ..+.|+.+....|+++.+........ . .....+.+++....
T Consensus 352 P~~g~y~~~~~~~~n~~l~~~lLsRFdLi~~~~d~~~~~~d~~i~~~i~~~~~~~~~~~~~~~~~~~~~~~l~~yi~~ar 431 (509)
T smart00350 352 PIGGRYDPKLTPEENIDLPAPILSRFDLLFVVLDEVDEERDRELAKHVVDLHRYSHPEPDEADEVPISQEFLRKYIAYAR 431 (509)
T ss_pred CCCcccCCCcChhhccCCChHHhCceeeEEEecCCCChHHHHHHHHHHHHhhcccCccccccccccCCHHHHHHHHHHHH
Confidence 753 58999999998765 55889999999999887654321100 0 00011111111111
Q ss_pred hhhhhcCCCHHHHHHHHHHc---------------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 436 QKIEIKGLTDDILMEAAAKT---------------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 436 ~~~~~~~~~~~~l~~la~~t---------------~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
....+.++++..+.|...+ .+.|+|.+..|++.++|.|.-.....++.+|+..|++-+.
T Consensus 432 -~~~~P~ls~~~~~~i~~~y~~~R~~~~~~~~~~~~~~t~R~l~sliRla~A~A~l~~r~~V~~~Dv~~ai~l~~ 505 (509)
T smart00350 432 -EKIKPKLSEEAAEKLVKAYVDLRKEDSQSEARSSIPITVRQLESIIRLSEAHAKMRLSDVVEEADVEEAIRLLR 505 (509)
T ss_pred -hcCCCCCCHHHHHHHHHHHHHhcccccccccccccCcCHHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHH
Confidence 1112347888777765541 2458999999999999998888889999999999998664
No 188
>TIGR00368 Mg chelatase-related protein. The N-terminal end matches very strongly a pfam Mg_chelatase domain.
Probab=99.39 E-value=1e-11 Score=132.44 Aligned_cols=230 Identities=22% Similarity=0.244 Sum_probs=133.4
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC----------------------
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------------------- 293 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---------------------- 293 (512)
.+|.+++|+..++..+...+ ....+++|+||||||||++++.++..+.
T Consensus 189 ~d~~dv~Gq~~~~~al~~aa----------~~g~~vlliG~pGsGKTtlar~l~~llp~~~~~~~le~~~i~s~~g~~~~ 258 (499)
T TIGR00368 189 LDLKDIKGQQHAKRALEIAA----------AGGHNLLLFGPPGSGKTMLASRLQGILPPLTNEEAIETARIWSLVGKLID 258 (499)
T ss_pred CCHHHhcCcHHHHhhhhhhc----------cCCCEEEEEecCCCCHHHHHHHHhcccCCCCCcEEEeccccccchhhhcc
Confidence 47899999999877764332 1224799999999999999999987542
Q ss_pred ------CCeEEEeCCCCCC--CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC-
Q 010366 294 ------LDYALMTGGDVAP--LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG- 364 (512)
Q Consensus 294 ------~~~~~v~~~~~~~--~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~- 364 (512)
.||....++.... .++..... ...+.. ..+++|||||++.+ +......|...++.-.
T Consensus 259 ~~~~~~~Pf~~p~~s~s~~~~~ggg~~~~-pG~i~l----A~~GvLfLDEi~e~---------~~~~~~~L~~~LE~~~v 324 (499)
T TIGR00368 259 RKQIKQRPFRSPHHSASKPALVGGGPIPL-PGEISL----AHNGVLFLDELPEF---------KRSVLDALREPIEDGSI 324 (499)
T ss_pred ccccccCCccccccccchhhhhCCccccc-hhhhhc----cCCCeEecCChhhC---------CHHHHHHHHHHHHcCcE
Confidence 1111111111000 11110000 111222 23689999999986 4455556655553211
Q ss_pred ---------CCCCCEEEEEeeCCC------C-----------------CCCHHHHccccceeecCCCCHHHHH-------
Q 010366 365 ---------DQSKDIVLALATNRP------G-----------------DLDSAVADRIDEVLEFPLPGQEERF------- 405 (512)
Q Consensus 365 ---------~~~~~viiI~ttN~~------~-----------------~l~~al~~R~~~~i~~~~p~~~er~------- 405 (512)
..+.++.+|+++|.. . .+...+++|||..+.+++++.++..
T Consensus 325 ~i~r~g~~~~~pa~frlIaa~Npcpcg~~~~~~~~c~c~~~~~~~y~~~is~pllDR~dl~~~~~~~~~~~l~~~~~~e~ 404 (499)
T TIGR00368 325 SISRASAKIFYPARFQLVAAMNPCPCGHYGGKNTHCRCSPQQISRYWNKLSGPFLDRIDLSVEVPLLPPEKLLSTGSGES 404 (499)
T ss_pred EEEecCcceeccCCeEEEEecCCcccCcCCCCcccccCCHHHHHHHhhhccHhHHhhCCEEEEEcCCCHHHHhccCCCCC
Confidence 124579999999862 1 4788999999999999988765431
Q ss_pred ------HHHHHHHHHHhh-hhCCCCCcchhhhhhhhhhhhhhcCCCHHH---HHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 010366 406 ------KLLKLYLDKYIA-QAGSRKPGLVHRLFKSEQQKIEIKGLTDDI---LMEAAAKTEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 406 ------~Il~~~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---l~~la~~t~g~s~~dI~~lv~~~~aa~~ 475 (512)
.+.+.+-..... .+.. .-....++-...-.+. -.++++. +...+.. .++|.|...+++..+.+.+.
T Consensus 405 s~~ir~rV~~Ar~~q~~R~~~~~-~~~~N~~l~~~~l~~~--~~l~~~~~~~l~~a~~~-~~lS~R~~~rilrvArTiAd 480 (499)
T TIGR00368 405 SAEVKQRVIKAREIQNIRYEKFA-NINKNADLNSDEIEQF--CKLSAIDANDLEGALNK-LGLSSRATHRILKVARTIAD 480 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCC-CCcccccCCHHHHHhh--cCCCHHHHHHHHHHHHh-cCCCchHHHHHHHHHHHHHh
Confidence 122111111000 0000 0000000000000011 1134433 3333333 46899999999999999998
Q ss_pred CCCCCccCHHHHHHHHHH
Q 010366 476 GSENCVLDPSLFREVVDY 493 (512)
Q Consensus 476 ~~~~~~it~e~~~~al~~ 493 (512)
-.+...|+.+|+.+|+.+
T Consensus 481 L~g~~~i~~~hv~eA~~~ 498 (499)
T TIGR00368 481 LKEEKNISREHLAEAIEY 498 (499)
T ss_pred hcCCCCCCHHHHHHHHhc
Confidence 888899999999999864
No 189
>PRK15429 formate hydrogenlyase transcriptional activator FhlA; Provisional
Probab=99.39 E-value=1.6e-11 Score=137.26 Aligned_cols=205 Identities=20% Similarity=0.231 Sum_probs=135.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhH
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~ 311 (512)
...|++++|.+..+..+..-+...+.. + .+|||+|++|||||++|++|.... +.||+.++|..+.....+.
T Consensus 372 n~~~~~liG~S~~~~~~~~~~~~~a~~---~---~pVLI~GE~GTGK~~lA~~ih~~s~r~~~~~v~i~c~~~~~~~~~~ 445 (686)
T PRK15429 372 DSEFGEIIGRSEAMYSVLKQVEMVAQS---D---STVLILGETGTGKELIARAIHNLSGRNNRRMVKMNCAAMPAGLLES 445 (686)
T ss_pred cccccceeecCHHHHHHHHHHHHHhCC---C---CCEEEECCCCcCHHHHHHHHHHhcCCCCCCeEEEecccCChhHhhh
Confidence 357899999999888886655544322 2 259999999999999999998764 5799999998874310000
Q ss_pred -------------HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCE
Q 010366 312 -------------VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDI 370 (512)
Q Consensus 312 -------------~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v 370 (512)
.......+..+ .+++||||||+.+ +...+..|..+++.-. ....++
T Consensus 446 ~lfg~~~~~~~g~~~~~~g~le~a----~~GtL~Ldei~~L---------~~~~Q~~L~~~l~~~~~~~~g~~~~~~~~~ 512 (686)
T PRK15429 446 DLFGHERGAFTGASAQRIGRFELA----DKSSLFLDEVGDM---------PLELQPKLLRVLQEQEFERLGSNKIIQTDV 512 (686)
T ss_pred hhcCcccccccccccchhhHHHhc----CCCeEEEechhhC---------CHHHHHHHHHHHHhCCEEeCCCCCcccceE
Confidence 00011123222 3689999999997 5566777777775421 123568
Q ss_pred EEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 371 VLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 371 iiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
.+|+||+.. ..+.+.+..|+ ..+.+..|+..+|.+-+...+..+..... ...+..+..+
T Consensus 513 RiI~~t~~~l~~~~~~~~f~~~L~~~l-~~~~i~lPpLreR~~Di~~L~~~~l~~~~-------------~~~~~~~~~~ 578 (686)
T PRK15429 513 RLIAATNRDLKKMVADREFRSDLYYRL-NVFPIHLPPLRERPEDIPLLVKAFTFKIA-------------RRMGRNIDSI 578 (686)
T ss_pred EEEEeCCCCHHHHHHcCcccHHHHhcc-CeeEEeCCChhhhHhHHHHHHHHHHHHHH-------------HHcCCCCCCc
Confidence 899998763 35667777788 56677777777777655444443321100 0001112248
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQA 472 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~a 472 (512)
+++.+..|..+.+..+.+++++++..+..
T Consensus 579 s~~al~~L~~y~WPGNvrEL~~~i~~a~~ 607 (686)
T PRK15429 579 PAETLRTLSNMEWPGNVRELENVIERAVL 607 (686)
T ss_pred CHHHHHHHHhCCCCCcHHHHHHHHHHHHH
Confidence 99999999999888889999998865443
No 190
>KOG2680 consensus DNA helicase TIP49, TBP-interacting protein [Transcription]
Probab=99.38 E-value=4.6e-11 Score=115.09 Aligned_cols=135 Identities=21% Similarity=0.216 Sum_probs=103.2
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC------------CCCCCHHHHccccceee
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------PGDLDSAVADRIDEVLE 395 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~------------~~~l~~al~~R~~~~i~ 395 (512)
|+||||||++.| .-+...+||..+ +++..++ +|++||+ |..++-.|++|+ .+|.
T Consensus 289 pGVLFIDEvHML---------DIEcFsFlNrAl---E~d~~Pi-iimaTNrgit~iRGTn~~SphGiP~D~lDR~-lII~ 354 (454)
T KOG2680|consen 289 PGVLFIDEVHML---------DIECFSFLNRAL---ENDMAPI-IIMATNRGITRIRGTNYRSPHGIPIDLLDRM-LIIS 354 (454)
T ss_pred cceEEEeeehhh---------hhHHHHHHHHHh---hhccCcE-EEEEcCCceEEeecCCCCCCCCCcHHHhhhh-heee
Confidence 568999999886 224444555544 3344554 4555554 678899999999 8999
Q ss_pred cCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 010366 396 FPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 396 ~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~ 475 (512)
..+++.++...|++..+...... +++++++.|......-|-|--..|+.++...+.
T Consensus 355 t~py~~~d~~~IL~iRc~EEdv~------------------------m~~~A~d~Lt~i~~~tsLRYai~Lit~a~~~~~ 410 (454)
T KOG2680|consen 355 TQPYTEEDIKKILRIRCQEEDVE------------------------MNPDALDLLTKIGEATSLRYAIHLITAASLVCL 410 (454)
T ss_pred cccCcHHHHHHHHHhhhhhhccc------------------------cCHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHH
Confidence 99999999999999998775432 788889988887766677777788877777777
Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHH
Q 010366 476 GSENCVLDPSLFREVVDYKVAEHQQ 500 (512)
Q Consensus 476 ~~~~~~it~e~~~~al~~~~~~~~~ 500 (512)
.+...++..+|+..+..-++...+.
T Consensus 411 krk~~~v~~~di~r~y~LFlD~~Rs 435 (454)
T KOG2680|consen 411 KRKGKVVEVDDIERVYRLFLDEKRS 435 (454)
T ss_pred HhcCceeehhHHHHHHHHHhhhhhh
Confidence 7777999999999999988876443
No 191
>COG1221 PspF Transcriptional regulators containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=99.38 E-value=3.9e-12 Score=130.10 Aligned_cols=205 Identities=20% Similarity=0.224 Sum_probs=132.9
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHH----hCCCeEEEeCCCCCCCch
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK----SGLDYALMTGGDVAPLGP 309 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~----l~~~~~~v~~~~~~~~~~ 309 (512)
....+.++||.+...+.+.+-+... ...+ .+||++|++||||+.+|+.|... .+.||+.+||+.++...-
T Consensus 73 ~~~~~~~LIG~~~~~~~~~eqik~~---ap~~---~~vLi~GetGtGKel~A~~iH~~s~r~~~~PFI~~NCa~~~en~~ 146 (403)
T COG1221 73 KSEALDDLIGESPSLQELREQIKAY---APSG---LPVLIIGETGTGKELFARLIHALSARRAEAPFIAFNCAAYSENLQ 146 (403)
T ss_pred cchhhhhhhccCHHHHHHHHHHHhh---CCCC---CcEEEecCCCccHHHHHHHHHHhhhcccCCCEEEEEHHHhCcCHH
Confidence 3445799999987777765544332 2222 35999999999999999999633 367999999999876433
Q ss_pred hHH-------------HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH-----cC---CCCC
Q 010366 310 QAV-------------TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-----TG---DQSK 368 (512)
Q Consensus 310 ~~~-------------~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----~~---~~~~ 368 (512)
... ..-..+|+.|. +++||||||..| +...+..+..+++. ++ ....
T Consensus 147 ~~eLFG~~kGaftGa~~~k~Glfe~A~----GGtLfLDEI~~L---------P~~~Q~kLl~~le~g~~~rvG~~~~~~~ 213 (403)
T COG1221 147 EAELFGHEKGAFTGAQGGKAGLFEQAN----GGTLFLDEIHRL---------PPEGQEKLLRVLEEGEYRRVGGSQPRPV 213 (403)
T ss_pred HHHHhccccceeecccCCcCchheecC----CCEEehhhhhhC---------CHhHHHHHHHHHHcCceEecCCCCCcCC
Confidence 221 11123344332 689999999997 55677777788776 32 2456
Q ss_pred CEEEEEeeCC--CCCCCH--HHHccccceeecCCCCHHHHHH----HHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhh
Q 010366 369 DIVLALATNR--PGDLDS--AVADRIDEVLEFPLPGQEERFK----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 440 (512)
Q Consensus 369 ~viiI~ttN~--~~~l~~--al~~R~~~~i~~~~p~~~er~~----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
+|.+|++||. .+.+-. .+.+|. ..+.+..|+..+|.. +++.++..+... .+..+
T Consensus 214 dVRli~AT~~~l~~~~~~g~dl~~rl-~~~~I~LPpLrER~~Di~~L~e~Fl~~~~~~-----------------l~~~~ 275 (403)
T COG1221 214 DVRLICATTEDLEEAVLAGADLTRRL-NILTITLPPLRERKEDILLLAEHFLKSEARR-----------------LGLPL 275 (403)
T ss_pred CceeeeccccCHHHHHHhhcchhhhh-cCceecCCChhhchhhHHHHHHHHHHHHHHH-----------------cCCCC
Confidence 7999998865 334444 666644 344555555555544 444444443322 12223
Q ss_pred cCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 010366 441 KGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 441 ~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~ 475 (512)
...+++.+..+-.+....+-+++++++..+.+.+.
T Consensus 276 ~~~~~~a~~~L~~y~~pGNirELkN~Ve~~~~~~~ 310 (403)
T COG1221 276 SVDSPEALRALLAYDWPGNIRELKNLVERAVAQAS 310 (403)
T ss_pred CCCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHHhc
Confidence 33556788888888766688999999965555543
No 192
>COG0606 Predicted ATPase with chaperone activity [Posttranslational modification, protein turnover, chaperones]
Probab=99.37 E-value=8.2e-12 Score=128.29 Aligned_cols=235 Identities=23% Similarity=0.253 Sum_probs=136.8
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---------CC-eEEEeCC--
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---------LD-YALMTGG-- 302 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---------~~-~~~v~~~-- 302 (512)
..+|.||+|++.++..+.-... -..|+||+||||||||++|+.+..-+. .. +..+.+.
T Consensus 175 ~~D~~DV~GQ~~AKrAleiAAA----------GgHnLl~~GpPGtGKTmla~Rl~~lLPpls~~E~lE~s~I~s~~g~~~ 244 (490)
T COG0606 175 APDFKDVKGQEQAKRALEIAAA----------GGHNLLLVGPPGTGKTMLASRLPGLLPPLSIPEALEVSAIHSLAGDLH 244 (490)
T ss_pred CcchhhhcCcHHHHHHHHHHHh----------cCCcEEEecCCCCchHHhhhhhcccCCCCChHHHHHHHHHhhhccccc
Confidence 3479999999999999864331 124799999999999999999865542 00 0001110
Q ss_pred ---------CC-CCCchhHHHHHHHHHHHH----HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC---
Q 010366 303 ---------DV-APLGPQAVTKIHQLFDWA----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD--- 365 (512)
Q Consensus 303 ---------~~-~~~~~~~~~~l~~lf~~a----~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~--- 365 (512)
.+ .+....+...+..--... ......+||||||+-.+ .+.+|+.|.+-+++
T Consensus 245 ~~~~~~~~rPFr~PHHsaS~~aLvGGG~~p~PGeIsLAH~GVLFLDElpef------------~~~iLe~LR~PLE~g~i 312 (490)
T COG0606 245 EGCPLKIHRPFRAPHHSASLAALVGGGGVPRPGEISLAHNGVLFLDELPEF------------KRSILEALREPLENGKI 312 (490)
T ss_pred ccCccceeCCccCCCccchHHHHhCCCCCCCCCceeeecCCEEEeeccchh------------hHHHHHHHhCccccCcE
Confidence 00 000000000000000000 00012479999999764 45788888877653
Q ss_pred ----------CCCCEEEEEeeCCC-----------------------CCCCHHHHccccceeecCCCCHHHHH-------
Q 010366 366 ----------QSKDIVLALATNRP-----------------------GDLDSAVADRIDEVLEFPLPGQEERF------- 405 (512)
Q Consensus 366 ----------~~~~viiI~ttN~~-----------------------~~l~~al~~R~~~~i~~~~p~~~er~------- 405 (512)
++.++.+|+++|.. ..+...|++|+|..+.++.++..++.
T Consensus 313 ~IsRa~~~v~ypa~Fqlv~AmNpcpcG~~~~~~~~C~c~~~~~~~Y~~klSgp~lDRiDl~vev~~~~~~e~~~~~~~~e 392 (490)
T COG0606 313 IISRAGSKVTYPARFQLVAAMNPCPCGNLGAPLRRCPCSPRQIKRYLNKLSGPFLDRIDLMVEVPRLSAGELIRQVPTGE 392 (490)
T ss_pred EEEEcCCeeEEeeeeEEhhhcCCCCccCCCCCCCCcCCCHHHHHHHHHHhhHHHHhhhhheecccCCCHHHhhcCCCCCC
Confidence 34567888888862 24567889999999999888744432
Q ss_pred -------HHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCC
Q 010366 406 -------KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSE 478 (512)
Q Consensus 406 -------~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~ 478 (512)
.++..+-.+....... . ....+....-.++..-+-.+..+...+-..-++|.|....++..+...+.-.+
T Consensus 393 ss~~v~~rVa~AR~~Q~~R~~~~--~-~Na~l~~~~l~k~~~L~~~~~~~L~~al~~~~lS~R~~~rILKvarTiADL~g 469 (490)
T COG0606 393 SSAGVRERVAKAREAQIARAGRI--G-INAELSEEALRKFCALQREDADLLKAALERLGLSARAYHRILKVARTIADLEG 469 (490)
T ss_pred CcHHHHHHHHHHHHHHHHHhhcc--C-cchhcCHHHHHHhcccCHhHHHHHHHHHHhcchhHHHHHHHHHHHhhhhcccC
Confidence 2222222111111100 0 11222222222222211222233333444558999999999999999988888
Q ss_pred CCccCHHHHHHHHHHH
Q 010366 479 NCVLDPSLFREVVDYK 494 (512)
Q Consensus 479 ~~~it~e~~~~al~~~ 494 (512)
...|...|+.+|+++-
T Consensus 470 ~~~i~~~hl~eAi~yR 485 (490)
T COG0606 470 SEQIERSHLAEAISYR 485 (490)
T ss_pred cchhhHHHHHHHHhhh
Confidence 8999999999999875
No 193
>TIGR02031 BchD-ChlD magnesium chelatase ATPase subunit D. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria. Unlike subunit I (TIGR02030), this subunit is not found in archaea.
Probab=99.36 E-value=1.9e-11 Score=133.48 Aligned_cols=222 Identities=13% Similarity=0.105 Sum_probs=139.8
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCCCCC--CchhH-HHHHH-HHHHH---HHhcCCCcEEEEccchh
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAP--LGPQA-VTKIH-QLFDW---AKKSKRGLLLFIDEADA 338 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~~~~--~~~~~-~~~l~-~lf~~---a~~~~~~~vl~lDEid~ 338 (512)
.++|||.|+||||||++|++++..++. ||+.+....... .|+.. ...+. ..+.. ......+++|||||++.
T Consensus 16 ~g~vLl~G~~GtgKs~lar~l~~~~~~~~pfv~i~~~~t~d~L~G~idl~~~~~~g~~~~~~G~L~~A~~GvL~lDEi~r 95 (589)
T TIGR02031 16 LGGVAIRARAGTGKTALARALAEILPPIMPFVELPLGVTEDRLIGGIDVEESLAGGQRVTQPGLLDEAPRGVLYVDMANL 95 (589)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhCCcCCCeEecCcccchhhcccchhhhhhhhcCcccCCCCCeeeCCCCcEeccchhh
Confidence 568999999999999999999998763 688777532222 11110 00000 00000 00012257999999999
Q ss_pred hhhhcccCCCCHHHHHHHHHHHHHcC----------CCCCCEEEEEeeCCCC---CCCHHHHccccceeecC-CCCHHHH
Q 010366 339 FLCERNKTYMSEAQRSALNALLFRTG----------DQSKDIVLALATNRPG---DLDSAVADRIDEVLEFP-LPGQEER 404 (512)
Q Consensus 339 l~~~~~~~~~~~~~~~~l~~ll~~~~----------~~~~~viiI~ttN~~~---~l~~al~~R~~~~i~~~-~p~~~er 404 (512)
+ +...+..|..++..-. ..+.++.||+|+|..+ .+.+++++||+..+.+. +|+.++|
T Consensus 96 l---------~~~~q~~Ll~al~~g~v~i~r~G~~~~~p~~f~lIAt~np~e~~g~L~~~LldRf~l~v~~~~~~~~~er 166 (589)
T TIGR02031 96 L---------DDGLSNRLLQALDEGVVIVEREGISVVHPAKFALIATYDPAEGGGGLPDHLLDRLALHVSLEDVASQDLR 166 (589)
T ss_pred C---------CHHHHHHHHHHHHcCCeEEEECCCceeecCceEEEEecCCccccCCCCHHHHHhccCeeecCCCCCHHHH
Confidence 7 4455566655554211 1235689999999865 79999999999887665 4577889
Q ss_pred HHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCCc-HHHHHHHHHHHHHHHhCCCCCc
Q 010366 405 FKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFS-GREIAKLMASVQAAVYGSENCV 481 (512)
Q Consensus 405 ~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~s-~~dI~~lv~~~~aa~~~~~~~~ 481 (512)
.+|++..+..+..... .........+......+.--.++++.+.+|+..+ .|.+ .|.-..++..+++.+.-.+...
T Consensus 167 ~eil~~~~~~~~~~~~-~~~~~~~~~i~~ar~~~~~V~i~~~~~~~l~~~~~~~gv~s~Ra~i~~~r~ArA~Aal~gr~~ 245 (589)
T TIGR02031 167 VEIVRRERCNEVFRMN-DELELLRGQIEAARELLPQVTISAEQVKELVLTAASLGISGHRADLFAVRAAKAHAALHGRTE 245 (589)
T ss_pred HHHHHHHHHhhhhhcc-hhhHHHHHHHHHHHHhcCCccCCHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHHhCCCC
Confidence 9999987743221100 0111111111111111222247888888877764 3443 5666677888888777777799
Q ss_pred cCHHHHHHHHHHHHHHHH
Q 010366 482 LDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 482 it~e~~~~al~~~~~~~~ 499 (512)
++.+|+..|+..++.+..
T Consensus 246 V~~~Dv~~a~~lvl~hR~ 263 (589)
T TIGR02031 246 VTEEDLKLAVELVLLPRA 263 (589)
T ss_pred CCHHHHHHHHHHHhhhhc
Confidence 999999999998877654
No 194
>COG2607 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=99.35 E-value=4.9e-11 Score=111.96 Aligned_cols=166 Identities=19% Similarity=0.294 Sum_probs=123.0
Q ss_pred ccCCCCCCccccChHHHHHHH-HHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIR-QLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL 307 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~-~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~ 307 (512)
..++..+.+++|.+..++.+. +..... .|.|-++|||+|..|||||++++++-.++ +..++.|+-.++.
T Consensus 53 ~~~~i~L~~l~Gvd~qk~~L~~NT~~F~-----~G~pANnVLLwGaRGtGKSSLVKA~~~e~~~~glrLVEV~k~dl~-- 125 (287)
T COG2607 53 DPDPIDLADLVGVDRQKEALVRNTEQFA-----EGLPANNVLLWGARGTGKSSLVKALLNEYADEGLRLVEVDKEDLA-- 125 (287)
T ss_pred CCCCcCHHHHhCchHHHHHHHHHHHHHH-----cCCcccceEEecCCCCChHHHHHHHHHHHHhcCCeEEEEcHHHHh--
Confidence 455667899999999999884 333333 35566799999999999999999998776 4567888766654
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH-cCCCCCCEEEEEeeCCCCCCC---
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-TGDQSKDIVLALATNRPGDLD--- 383 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~-~~~~~~~viiI~ttN~~~~l~--- 383 (512)
.+-.+++..+......|||+||+--= ..+.....|..+|.. +...+.||+|.+|+|+...++
T Consensus 126 ------~Lp~l~~~Lr~~~~kFIlFcDDLSFe--------~gd~~yK~LKs~LeG~ve~rP~NVl~YATSNRRHLl~e~~ 191 (287)
T COG2607 126 ------TLPDLVELLRARPEKFILFCDDLSFE--------EGDDAYKALKSALEGGVEGRPANVLFYATSNRRHLLPEDM 191 (287)
T ss_pred ------hHHHHHHHHhcCCceEEEEecCCCCC--------CCchHHHHHHHHhcCCcccCCCeEEEEEecCCcccccHhh
Confidence 34446777777777889999998430 122344556666643 356788999999999854332
Q ss_pred -----------H--------HHHccccceeecCCCCHHHHHHHHHHHHHHHhhh
Q 010366 384 -----------S--------AVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQ 418 (512)
Q Consensus 384 -----------~--------al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~ 418 (512)
| ++-+||+..+.|++++.++-..|+..++.++...
T Consensus 192 ~dn~~~~~eih~~eaveEKlSlSDRFGLwL~F~~~~Q~~YL~~V~~~a~~~~l~ 245 (287)
T COG2607 192 KDNEGSTGEIHPSEAVEEKLSLSDRFGLWLSFYPCDQDEYLKIVDHYAKHFGLD 245 (287)
T ss_pred hhCCCcccccChhHHHHHhhchhhhcceeecccCCCHHHHHHHHHHHHHHcCCC
Confidence 1 3445999999999999999999999999887543
No 195
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=99.34 E-value=7.3e-11 Score=119.10 Aligned_cols=131 Identities=16% Similarity=0.239 Sum_probs=98.4
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC------------------------eEEEeCCCCCCCchhHHHHHHHHHH
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------------YALMTGGDVAPLGPQAVTKIHQLFD 320 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~------------------------~~~v~~~~~~~~~~~~~~~l~~lf~ 320 (512)
+..+..+||+||+|+||+++|+++|..+-+. ++.+...+-... ....++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~GK~~lA~~~A~~llC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~I---~id~iR~l~~ 97 (325)
T PRK06871 21 GLGHHALLFKADSGLGTEQLIRALAQWLMCQTPQGDQPCGQCHSCHLFQAGNHPDFHILEPIDNKDI---GVDQVREINE 97 (325)
T ss_pred CCcceeEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEccccCCCC---CHHHHHHHHH
Confidence 3444679999999999999999999887431 222221110011 3445555555
Q ss_pred HHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecC
Q 010366 321 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 321 ~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~ 397 (512)
.+.. ..++-|++||++|.+ .....|.||..+++++.+++||++|+.++.+.|.++||+ ..+.|+
T Consensus 98 ~~~~~~~~g~~KV~iI~~a~~m------------~~~AaNaLLKtLEEPp~~~~fiL~t~~~~~llpTI~SRC-~~~~~~ 164 (325)
T PRK06871 98 KVSQHAQQGGNKVVYIQGAERL------------TEAAANALLKTLEEPRPNTYFLLQADLSAALLPTIYSRC-QTWLIH 164 (325)
T ss_pred HHhhccccCCceEEEEechhhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChHhCchHHHhhc-eEEeCC
Confidence 4442 233569999999996 355778999999999999999999999999999999999 999999
Q ss_pred CCCHHHHHHHHHHH
Q 010366 398 LPGQEERFKLLKLY 411 (512)
Q Consensus 398 ~p~~~er~~Il~~~ 411 (512)
+|+.++....+...
T Consensus 165 ~~~~~~~~~~L~~~ 178 (325)
T PRK06871 165 PPEEQQALDWLQAQ 178 (325)
T ss_pred CCCHHHHHHHHHHH
Confidence 99999988777654
No 196
>PRK10923 glnG nitrogen regulation protein NR(I); Provisional
Probab=99.34 E-value=2e-11 Score=130.89 Aligned_cols=301 Identities=16% Similarity=0.125 Sum_probs=178.3
Q ss_pred HhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhCC
Q 010366 119 LAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQ 198 (512)
Q Consensus 119 ~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 198 (512)
...|+.+.++.++.. ..++.++......+.....+++........+..+..++.+++.+|.....+...+...+..
T Consensus 46 ~~~DlvllD~~lp~~----dgl~~l~~ir~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 121 (469)
T PRK10923 46 KTPDVLLSDIRMPGM----DGLALLKQIKQRHPMLPVIIMTAHSDLDAAVSAYQQGAFDYLPKPFDIDEAVALVERAISH 121 (469)
T ss_pred CCCCEEEECCCCCCC----CHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHhcCcceEEecCCcHHHHHHHHHHHHHH
Confidence 445666666554432 2333333333222222223344444444455555666778888888777777777666542
Q ss_pred CCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCC
Q 010366 199 PSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPG 278 (512)
Q Consensus 199 ~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppG 278 (512)
.....+.. .......+.+++|.......+...+.... ..+. +++|+|++|
T Consensus 122 ~~~~~~~~------------------------~~~~~~~~~~lig~s~~~~~l~~~~~~~~---~~~~---~vli~Ge~G 171 (469)
T PRK10923 122 YQEQQQPR------------------------NIQVNGPTTDIIGEAPAMQDVFRIIGRLS---RSSI---SVLINGESG 171 (469)
T ss_pred HHHHHhhh------------------------hhhhccccccceecCHHHHHHHHHHHHHh---ccCC---eEEEEeCCC
Confidence 11000000 00111236789999887777765554332 2222 499999999
Q ss_pred CchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHHHHHH--------------HhcCCCcEEEEccchhhhh
Q 010366 279 TGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWA--------------KKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 279 tGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a--------------~~~~~~~vl~lDEid~l~~ 341 (512)
||||++|+++.... +.||+.++|+.+.... .. ..+|... .....++.|||||++.|
T Consensus 172 tGK~~lA~~ih~~s~~~~~~~i~i~c~~~~~~~--~~---~~lfg~~~g~~~~~~~~~~g~~~~a~~Gtl~l~~i~~l-- 244 (469)
T PRK10923 172 TGKELVAHALHRHSPRAKAPFIALNMAAIPKDL--IE---SELFGHEKGAFTGANTIRQGRFEQADGGTLFLDEIGDM-- 244 (469)
T ss_pred CcHHHHHHHHHhcCCCCCCCeEeeeCCCCCHHH--HH---HHhcCCCCCCCCCCCcCCCCCeeECCCCEEEEeccccC--
Confidence 99999999998876 3689999998874311 00 1111110 01123678999999997
Q ss_pred hcccCCCCHHHHHHHHHHHHHcC-----C---CCCCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHH
Q 010366 342 ERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
+...+..|..+++.-. . ...++.||+||+.. ..+.+.+..|+ ..+.+..|+..+|.+
T Consensus 245 -------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~~~~~L~~~l-~~~~i~~PpLreR~~ 316 (469)
T PRK10923 245 -------PLDVQTRLLRVLADGQFYRVGGYAPVKVDVRIIAATHQNLEQRVQEGKFREDLFHRL-NVIRVHLPPLRERRE 316 (469)
T ss_pred -------CHHHHHHHHHHHhcCcEEeCCCCCeEEeeEEEEEeCCCCHHHHHHcCCchHHHHHHh-cceeecCCCcccchh
Confidence 5566666666665421 0 12357899998763 36778889998 455666666555555
Q ss_pred ----HHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCcc
Q 010366 407 ----LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 482 (512)
Q Consensus 407 ----Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~i 482 (512)
++..++..+.... +.....++++++..|..+.+..+.+++++++..+...+ ....|
T Consensus 317 Di~~l~~~~l~~~~~~~-----------------~~~~~~~~~~a~~~L~~~~wpgNv~eL~~~i~~~~~~~---~~~~i 376 (469)
T PRK10923 317 DIPRLARHFLQVAAREL-----------------GVEAKLLHPETEAALTRLAWPGNVRQLENTCRWLTVMA---AGQEV 376 (469)
T ss_pred hHHHHHHHHHHHHHHHc-----------------CCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCcc
Confidence 4555554432211 11123489999999999988888899999886544332 23466
Q ss_pred CHHHHH
Q 010366 483 DPSLFR 488 (512)
Q Consensus 483 t~e~~~ 488 (512)
+.+++.
T Consensus 377 ~~~~l~ 382 (469)
T PRK10923 377 LIQDLP 382 (469)
T ss_pred cHHHCc
Confidence 666664
No 197
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=99.34 E-value=1.3e-11 Score=112.92 Aligned_cols=136 Identities=22% Similarity=0.347 Sum_probs=91.0
Q ss_pred cChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-----------------------CeEEE
Q 010366 243 LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-----------------------DYALM 299 (512)
Q Consensus 243 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-----------------------~~~~v 299 (512)
|++.+.+.+...+ ..+..+..+||+||+|+||+++|.++|+.+-. +++.+
T Consensus 1 gq~~~~~~L~~~~-------~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~~~~~~~~~d~~~~ 73 (162)
T PF13177_consen 1 GQEEIIELLKNLI-------KSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCRRIEEGNHPDFIII 73 (162)
T ss_dssp S-HHHHHHHHHHH-------HCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHHHHHTT-CTTEEEE
T ss_pred CcHHHHHHHHHHH-------HcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHhccCcceEEE
Confidence 5666666665544 23444456999999999999999999988632 23344
Q ss_pred eCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee
Q 010366 300 TGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT 376 (512)
Q Consensus 300 ~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt 376 (512)
+...... .-..+.++.+...+.. ..++-|++||++|.+ .....|.||..+++++.++++|++|
T Consensus 74 ~~~~~~~--~i~i~~ir~i~~~~~~~~~~~~~KviiI~~ad~l------------~~~a~NaLLK~LEepp~~~~fiL~t 139 (162)
T PF13177_consen 74 KPDKKKK--SIKIDQIREIIEFLSLSPSEGKYKVIIIDEADKL------------TEEAQNALLKTLEEPPENTYFILIT 139 (162)
T ss_dssp ETTTSSS--SBSHHHHHHHHHHCTSS-TTSSSEEEEEETGGGS-------------HHHHHHHHHHHHSTTTTEEEEEEE
T ss_pred ecccccc--hhhHHHHHHHHHHHHHHHhcCCceEEEeehHhhh------------hHHHHHHHHHHhcCCCCCEEEEEEE
Confidence 3332211 1123445555554432 223569999999996 4567788888889999999999999
Q ss_pred CCCCCCCHHHHccccceeecCCCC
Q 010366 377 NRPGDLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 377 N~~~~l~~al~~R~~~~i~~~~p~ 400 (512)
+.++.+-|.++||+ ..+.|++++
T Consensus 140 ~~~~~il~TI~SRc-~~i~~~~ls 162 (162)
T PF13177_consen 140 NNPSKILPTIRSRC-QVIRFRPLS 162 (162)
T ss_dssp S-GGGS-HHHHTTS-EEEEE----
T ss_pred CChHHChHHHHhhc-eEEecCCCC
Confidence 99999999999999 888887754
No 198
>PRK11361 acetoacetate metabolism regulatory protein AtoC; Provisional
Probab=99.33 E-value=3.3e-11 Score=128.71 Aligned_cols=270 Identities=17% Similarity=0.167 Sum_probs=162.3
Q ss_pred hhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhCCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCC
Q 010366 158 LTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNG 237 (512)
Q Consensus 158 ~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~ 237 (512)
++........+..+..++.+++.+|.....+...+...+....+..+.. ..... ......
T Consensus 82 lt~~~~~~~~~~a~~~Ga~d~l~KP~~~~~L~~~i~~~l~~~~l~~~~~-----------~l~~~---------l~~~~~ 141 (457)
T PRK11361 82 MTAYAEVETAVEALRCGAFDYVIKPFDLDELNLIVQRALQLQSMKKEIR-----------HLHQA---------LSTSWQ 141 (457)
T ss_pred EeCCCCHHHHHHHHHCCccEEEecccCHHHHHHHHhhhccccccchhhh-----------hhhhh---------hhcccc
Confidence 3444445555556666777888888777777776666554322111100 00000 011223
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHH
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTK 314 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~ 314 (512)
+..++|.......+...+....... .+++++|++||||+++|+++.... +.+|+.++|..+..... .
T Consensus 142 ~~~ii~~S~~~~~~~~~~~~~a~~~------~~vli~Ge~GtGK~~lA~~ih~~s~~~~~~~~~i~c~~~~~~~~--~-- 211 (457)
T PRK11361 142 WGHILTNSPAMMDICKDTAKIALSQ------ASVLISGESGTGKELIARAIHYNSRRAKGPFIKVNCAALPESLL--E-- 211 (457)
T ss_pred ccceecccHHHhHHHHHHHHHcCCC------cEEEEEcCCCccHHHHHHHHHHhCCCCCCCeEEEECCCCCHHHH--H--
Confidence 5678888776666644433332221 259999999999999999997764 47899999988753110 0
Q ss_pred HHHHHHHH--------------HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEE
Q 010366 315 IHQLFDWA--------------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVL 372 (512)
Q Consensus 315 l~~lf~~a--------------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~vii 372 (512)
..+|... .....+++|||||++.+ +...+..|..++..-. ....++.|
T Consensus 212 -~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ld~i~~l---------~~~~q~~L~~~l~~~~~~~~~~~~~~~~~~ri 281 (457)
T PRK11361 212 -SELFGHEKGAFTGAQTLRQGLFERANEGTLLLDEIGEM---------PLVLQAKLLRILQEREFERIGGHQTIKVDIRI 281 (457)
T ss_pred -HHhcCCCCCCCCCCCCCCCCceEECCCCEEEEechhhC---------CHHHHHHHHHHHhcCcEEeCCCCceeeeceEE
Confidence 0111100 01123679999999997 4455666666664321 11245889
Q ss_pred EEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHH----HHHHHHhhhhCCCCCcchhhhhhhhhhhhhhc
Q 010366 373 ALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLK----LYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIK 441 (512)
Q Consensus 373 I~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~----~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 441 (512)
|+|||.. ..+.+.+..|+ ..+.+..|+..+|..-+. .++.++.... +..+.
T Consensus 282 i~~t~~~l~~~~~~g~~~~~l~~~l-~~~~i~~ppLreR~~di~~l~~~~l~~~~~~~-----------------~~~~~ 343 (457)
T PRK11361 282 IAATNRDLQAMVKEGTFREDLFYRL-NVIHLILPPLRDRREDISLLANHFLQKFSSEN-----------------QRDII 343 (457)
T ss_pred EEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhchhhHHHHHHHHHHHHHHHc-----------------CCCCC
Confidence 9999864 35777888888 557777777777766444 4443332110 11123
Q ss_pred CCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 010366 442 GLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 488 (512)
Q Consensus 442 ~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~ 488 (512)
.++++++..|..+.+..+.+++++++..+... ..+..|+.+++.
T Consensus 344 ~~~~~a~~~L~~~~wpgNv~eL~~~~~~~~~~---~~~~~i~~~~l~ 387 (457)
T PRK11361 344 DIDPMAMSLLTAWSWPGNIRELSNVIERAVVM---NSGPIIFSEDLP 387 (457)
T ss_pred CcCHHHHHHHHcCCCCCcHHHHHHHHHHHHHh---CCCCcccHHHCh
Confidence 48999999999998877888998888544332 223456666554
No 199
>KOG0990 consensus Replication factor C, subunit RFC5 [Replication, recombination and repair]
Probab=99.33 E-value=1.2e-11 Score=120.64 Aligned_cols=194 Identities=21% Similarity=0.199 Sum_probs=135.0
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC------eEEEeCCCC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD------YALMTGGDV 304 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~------~~~v~~~~~ 304 (512)
+.+++..+.++++++++...+..+. ..++.| |.|+|||||||||+...+.|..+..+ +..++.++-
T Consensus 33 ekyrP~~l~dv~~~~ei~st~~~~~------~~~~lP--h~L~YgPPGtGktsti~a~a~~ly~~~~~~~m~lelnaSd~ 104 (360)
T KOG0990|consen 33 EKYRPPFLGIVIKQEPIWSTENRYS------GMPGLP--HLLFYGPPGTGKTSTILANARDFYSPHPTTSMLLELNASDD 104 (360)
T ss_pred cCCCCchhhhHhcCCchhhHHHHhc------cCCCCC--cccccCCCCCCCCCchhhhhhhhcCCCCchhHHHHhhccCc
Confidence 4678888999999999999987763 233344 99999999999999999999998664 122334443
Q ss_pred CCCchhHHHHHHHHHHHHHh------cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 305 APLGPQAVTKIHQLFDWAKK------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 305 ~~~~~~~~~~l~~lf~~a~~------~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
.+ ......-...|..+.. ......|+|||+|.+ .+.+.|.|-...+....++.|+..+|.
T Consensus 105 rg--id~vr~qi~~fast~~~~~fst~~~fKlvILDEADaM------------T~~AQnALRRviek~t~n~rF~ii~n~ 170 (360)
T KOG0990|consen 105 RG--IDPVRQQIHLFASTQQPTTYSTHAAFKLVILDEADAM------------TRDAQNALRRVIEKYTANTRFATISNP 170 (360)
T ss_pred cC--CcchHHHHHHHHhhccceeccccCceeEEEecchhHh------------hHHHHHHHHHHHHHhccceEEEEeccC
Confidence 22 2223333334444432 123568999999995 344455555566777889999999999
Q ss_pred CCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCC
Q 010366 379 PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 458 (512)
Q Consensus 379 ~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 458 (512)
+..+.|++++|| ..+.|.+.+.......+...+..-... ++++....++..+
T Consensus 171 ~~ki~pa~qsRc-trfrf~pl~~~~~~~r~shi~e~e~~~------------------------~~~~~~~a~~r~s--- 222 (360)
T KOG0990|consen 171 PQKIHPAQQSRC-TRFRFAPLTMAQQTERQSHIRESEQKE------------------------TNPEGYSALGRLS--- 222 (360)
T ss_pred hhhcCchhhccc-ccCCCCCCChhhhhhHHHHHHhcchhh------------------------cCHHHHHHHHHHh---
Confidence 999999999999 788998888888877777776543221 5555555555543
Q ss_pred cHHHHHHHHHHHHHHHh
Q 010366 459 SGREIAKLMASVQAAVY 475 (512)
Q Consensus 459 s~~dI~~lv~~~~aa~~ 475 (512)
..|++..++-++..+.
T Consensus 223 -~gDmr~a~n~Lqs~~~ 238 (360)
T KOG0990|consen 223 -VGDMRVALNYLQSILK 238 (360)
T ss_pred -HHHHHHHHHHHHHHHH
Confidence 3467776655555443
No 200
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=99.33 E-value=6e-11 Score=120.77 Aligned_cols=131 Identities=18% Similarity=0.212 Sum_probs=97.4
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCC------------------------CeEEEeCCCCCCCchhHHHHHHHHHH
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGL------------------------DYALMTGGDVAPLGPQAVTKIHQLFD 320 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~------------------------~~~~v~~~~~~~~~~~~~~~l~~lf~ 320 (512)
+..+..+||+||+|+||+++|.++|..+-+ ++..+....-. ..-..+.++.+.+
T Consensus 21 ~rl~HA~Lf~G~~G~Gk~~lA~~~A~~LlC~~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~--~~I~idqiR~l~~ 98 (334)
T PRK07993 21 GRGHHALLIQALPGMGDDALIYALSRWLMCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLTPEKGK--SSLGVDAVREVTE 98 (334)
T ss_pred CCcceEEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEeccccc--ccCCHHHHHHHHH
Confidence 444567999999999999999999998732 12222211000 0112445555555
Q ss_pred HHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecC
Q 010366 321 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 321 ~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~ 397 (512)
.+.. ...+-|++||++|.+ ....-|.||..+++++.+++||++|+.++.+.|.++||+ ..+.|+
T Consensus 99 ~~~~~~~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTIrSRC-q~~~~~ 165 (334)
T PRK07993 99 KLYEHARLGGAKVVWLPDAALL------------TDAAANALLKTLEEPPENTWFFLACREPARLLATLRSRC-RLHYLA 165 (334)
T ss_pred HHhhccccCCceEEEEcchHhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-ccccCC
Confidence 4432 234569999999996 355778999999999999999999999999999999999 688999
Q ss_pred CCCHHHHHHHHHH
Q 010366 398 LPGQEERFKLLKL 410 (512)
Q Consensus 398 ~p~~~er~~Il~~ 410 (512)
+|+.++....+..
T Consensus 166 ~~~~~~~~~~L~~ 178 (334)
T PRK07993 166 PPPEQYALTWLSR 178 (334)
T ss_pred CCCHHHHHHHHHH
Confidence 9999888877754
No 201
>PRK15115 response regulator GlrR; Provisional
Probab=99.31 E-value=9.5e-11 Score=124.70 Aligned_cols=300 Identities=18% Similarity=0.208 Sum_probs=173.7
Q ss_pred HhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhCC
Q 010366 119 LAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQ 198 (512)
Q Consensus 119 ~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 198 (512)
...|+.+.++.++.. ..++.+.......+.....++++.......+..+..++.+++.+|.....+...+...+..
T Consensus 48 ~~~dlvilD~~lp~~----~g~~ll~~l~~~~~~~pvIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~l~~~~~~ 123 (444)
T PRK15115 48 EKVDLVISDLRMDEM----DGMQLFAEIQKVQPGMPVIILTAHGSIPDAVAATQQGVFSFLTKPVDRDALYKAIDDALEQ 123 (444)
T ss_pred CCCCEEEEcCCCCCC----CHHHHHHHHHhcCCCCcEEEEECCCCHHHHHHHHhcChhhhccCCCCHHHHHHHHHHHHHh
Confidence 345666655544332 2233333322222222223344444455555666677788999998888888877776543
Q ss_pred CCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCC
Q 010366 199 PSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPG 278 (512)
Q Consensus 199 ~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppG 278 (512)
..... . ......++|.......+........ ... ..++|+|++|
T Consensus 124 ~~~~~-----~-------------------------~~~~~~lig~s~~~~~~~~~~~~~a---~~~---~~vli~Ge~G 167 (444)
T PRK15115 124 SAPAT-----D-------------------------ERWREAIVTRSPLMLRLLEQARMVA---QSD---VSVLINGQSG 167 (444)
T ss_pred hhccc-----c-------------------------cchhhcccccCHHHHHHHHHHHhhc---cCC---CeEEEEcCCc
Confidence 21100 0 0001346776655544433222221 112 2599999999
Q ss_pred CchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHHHHHH--------------HhcCCCcEEEEccchhhhh
Q 010366 279 TGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWA--------------KKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 279 tGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a--------------~~~~~~~vl~lDEid~l~~ 341 (512)
||||++|+++.... +.+|+.++|..+.....+ ..+|... .....+++|||||++.|
T Consensus 168 tGk~~lA~~ih~~s~r~~~~f~~i~c~~~~~~~~~-----~~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~~i~~l-- 240 (444)
T PRK15115 168 TGKEILAQAIHNASPRASKPFIAINCGALPEQLLE-----SELFGHARGAFTGAVSNREGLFQAAEGGTLFLDEIGDM-- 240 (444)
T ss_pred chHHHHHHHHHHhcCCCCCCeEEEeCCCCCHHHHH-----HHhcCCCcCCCCCCccCCCCcEEECCCCEEEEEccccC--
Confidence 99999999998775 479999999887431111 1122110 01123579999999997
Q ss_pred hcccCCCCHHHHHHHHHHHHHcC-----C---CCCCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHH
Q 010366 342 ERNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
+...+..|..++..-. . ...++.+|+||+.. ..+.+.+..|+ ..+.+..|+..+|.+
T Consensus 241 -------~~~~q~~L~~~l~~~~~~~~g~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~l~~~l-~~~~i~lPpLr~R~e 312 (444)
T PRK15115 241 -------PAPLQVKLLRVLQERKVRPLGSNRDIDIDVRIISATHRDLPKAMARGEFREDLYYRL-NVVSLKIPALAERTE 312 (444)
T ss_pred -------CHHHHHHHHHHHhhCCEEeCCCCceeeeeEEEEEeCCCCHHHHHHcCCccHHHHHhh-ceeeecCCChHhccc
Confidence 5566666666665321 0 12368899988763 25667777777 667778888888776
Q ss_pred HHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHH
Q 010366 407 LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSL 486 (512)
Q Consensus 407 Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~ 486 (512)
-+...+..+..... . ..+..+..++++++..|..+.+..+.+++.+++..+... .....|+.++
T Consensus 313 Di~~l~~~~l~~~~------------~-~~~~~~~~~~~~a~~~L~~~~WpgNvreL~~~i~~~~~~---~~~~~i~~~~ 376 (444)
T PRK15115 313 DIPLLANHLLRQAA------------E-RHKPFVRAFSTDAMKRLMTASWPGNVRQLVNVIEQCVAL---TSSPVISDAL 376 (444)
T ss_pred cHHHHHHHHHHHHH------------H-HhCCCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHh---CCCCccChhh
Confidence 44433333221100 0 001112248999999999998777888888888654332 2335677666
Q ss_pred HHH
Q 010366 487 FRE 489 (512)
Q Consensus 487 ~~~ 489 (512)
+..
T Consensus 377 l~~ 379 (444)
T PRK15115 377 VEQ 379 (444)
T ss_pred hhh
Confidence 643
No 202
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=99.31 E-value=1.7e-10 Score=126.38 Aligned_cols=188 Identities=21% Similarity=0.274 Sum_probs=139.5
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCCCC
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDV 304 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~~~ 304 (512)
...++-+||.++-+.++.+++... ..++-+|.|+||+|||.++..+|... +..++.++.+.+
T Consensus 166 ~gklDPvIGRd~EI~r~iqIL~RR--------~KNNPvLiGEpGVGKTAIvEGLA~rIv~g~VP~~L~~~~i~sLD~g~L 237 (786)
T COG0542 166 EGKLDPVIGRDEEIRRTIQILSRR--------TKNNPVLVGEPGVGKTAIVEGLAQRIVNGDVPESLKDKRIYSLDLGSL 237 (786)
T ss_pred cCCCCCCcChHHHHHHHHHHHhcc--------CCCCCeEecCCCCCHHHHHHHHHHHHhcCCCCHHHcCCEEEEecHHHH
Confidence 445799999998888887765221 11367899999999999999999885 345666766665
Q ss_pred CC---CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC-
Q 010366 305 AP---LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG- 380 (512)
Q Consensus 305 ~~---~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~- 380 (512)
.. +-++.++.+..+.+.+.... +.||||||++.+.+.....+.+-...+.|.-.| ..+.+.+|++|+..+
T Consensus 238 vAGakyRGeFEeRlk~vl~ev~~~~-~vILFIDEiHtiVGAG~~~G~a~DAaNiLKPaL-----ARGeL~~IGATT~~EY 311 (786)
T COG0542 238 VAGAKYRGEFEERLKAVLKEVEKSK-NVILFIDEIHTIVGAGATEGGAMDAANLLKPAL-----ARGELRCIGATTLDEY 311 (786)
T ss_pred hccccccCcHHHHHHHHHHHHhcCC-CeEEEEechhhhcCCCcccccccchhhhhHHHH-----hcCCeEEEEeccHHHH
Confidence 32 67888999999999999877 899999999999877654331122233344444 456678888886533
Q ss_pred ----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC
Q 010366 381 ----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 456 (512)
Q Consensus 381 ----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 456 (512)
.-|++|-+|| ..|.+..|+.++-..|++-.-..+...+... ++|+++...+..+.
T Consensus 312 Rk~iEKD~AL~RRF-Q~V~V~EPs~e~ti~ILrGlk~~yE~hH~V~--------------------i~D~Al~aAv~LS~ 370 (786)
T COG0542 312 RKYIEKDAALERRF-QKVLVDEPSVEDTIAILRGLKERYEAHHGVR--------------------ITDEALVAAVTLSD 370 (786)
T ss_pred HHHhhhchHHHhcC-ceeeCCCCCHHHHHHHHHHHHHHHHHccCce--------------------ecHHHHHHHHHHHH
Confidence 4589999999 9999999999999999999888876655432 66776766666644
Q ss_pred C
Q 010366 457 G 457 (512)
Q Consensus 457 g 457 (512)
.
T Consensus 371 R 371 (786)
T COG0542 371 R 371 (786)
T ss_pred h
Confidence 3
No 203
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=99.29 E-value=1.3e-10 Score=117.03 Aligned_cols=133 Identities=25% Similarity=0.312 Sum_probs=97.3
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC---------------------eEEEe--CCCCCC--CchhHHHHHHHHH
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------------YALMT--GGDVAP--LGPQAVTKIHQLF 319 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------------~~~v~--~~~~~~--~~~~~~~~l~~lf 319 (512)
+.-+..+||+||+|+||+++|.++|..+-+. +..+. ...-.. ...-..+.++.+.
T Consensus 23 ~rl~HA~Lf~Gp~G~GK~~lA~~lA~~LlC~~~~~~~~c~~c~~~~~g~HPD~~~i~~~p~~~~~k~~~~I~idqIR~l~ 102 (319)
T PRK08769 23 GRLGHGLLICGPEGLGKRAVALALAEHVLASGPDPAAAQRTRQLIAAGTHPDLQLVSFIPNRTGDKLRTEIVIEQVREIS 102 (319)
T ss_pred CCcceeEeeECCCCCCHHHHHHHHHHHHhCCCCCCCCcchHHHHHhcCCCCCEEEEecCCCcccccccccccHHHHHHHH
Confidence 3344579999999999999999999876321 22221 100000 0011345666666
Q ss_pred HHHHhcC---CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeec
Q 010366 320 DWAKKSK---RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEF 396 (512)
Q Consensus 320 ~~a~~~~---~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~ 396 (512)
+.+.... .+-|++||++|.+ .....|.||..+++++.+++||++|+.++.+.|.++||| ..+.|
T Consensus 103 ~~~~~~p~~g~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~~~fiL~~~~~~~lLpTIrSRC-q~i~~ 169 (319)
T PRK08769 103 QKLALTPQYGIAQVVIVDPADAI------------NRAACNALLKTLEEPSPGRYLWLISAQPARLPATIRSRC-QRLEF 169 (319)
T ss_pred HHHhhCcccCCcEEEEeccHhhh------------CHHHHHHHHHHhhCCCCCCeEEEEECChhhCchHHHhhh-eEeeC
Confidence 6554322 3469999999996 345678899999999999999999999999999999999 99999
Q ss_pred CCCCHHHHHHHHHH
Q 010366 397 PLPGQEERFKLLKL 410 (512)
Q Consensus 397 ~~p~~~er~~Il~~ 410 (512)
++|+.++....+..
T Consensus 170 ~~~~~~~~~~~L~~ 183 (319)
T PRK08769 170 KLPPAHEALAWLLA 183 (319)
T ss_pred CCcCHHHHHHHHHH
Confidence 99999888877764
No 204
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=99.29 E-value=1e-11 Score=110.50 Aligned_cols=110 Identities=25% Similarity=0.320 Sum_probs=69.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCc----hhHHHH-----HHHHHHHHHhcCCCcEEEEccchhhh
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG----PQAVTK-----IHQLFDWAKKSKRGLLLFIDEADAFL 340 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~----~~~~~~-----l~~lf~~a~~~~~~~vl~lDEid~l~ 340 (512)
+|+|+||||||||++|+.+|..++.++..++++...... .-.... ....+..+. ..++++||||++..
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~~~~~~dl~g~~~~~~~~~~~~~~~l~~a~--~~~~il~lDEin~a- 77 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSSDTTEEDLIGSYDPSNGQFEFKDGPLVRAM--RKGGILVLDEINRA- 77 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TTTSTHHHHHCEEET-TTTTCEEE-CCCTTH--HEEEEEEESSCGG--
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEeccccccccceeeeeecccccccccccccccc--cceeEEEECCcccC-
Confidence 489999999999999999999999999999887643210 000000 000000011 13689999999984
Q ss_pred hhcccCCCCHHHHHHHHHHHHHcC----C------CCC------CEEEEEeeCCCC----CCCHHHHccc
Q 010366 341 CERNKTYMSEAQRSALNALLFRTG----D------QSK------DIVLALATNRPG----DLDSAVADRI 390 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~ll~~~~----~------~~~------~viiI~ttN~~~----~l~~al~~R~ 390 (512)
+......|+.++..-. . ... ++.||+|+|... .+++++.+||
T Consensus 78 --------~~~v~~~L~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~~ii~t~N~~~~~~~~l~~al~~Rf 139 (139)
T PF07728_consen 78 --------PPEVLESLLSLLEERRIQLPEGGEEIKEPNNDLASPNFRIIATMNPRDKGRKELSPALLDRF 139 (139)
T ss_dssp ---------HHHHHTTHHHHSSSEEEE-TSSSEEE--TT------EEEEEEESSST--TTTTCHHHHTT-
T ss_pred --------CHHHHHHHHHHHhhCcccccCCCcEEecCcccccccceEEEEEEcCCCCCcCcCCHHHHhhC
Confidence 3344445555554310 0 111 489999999988 8999999998
No 205
>KOG1969 consensus DNA replication checkpoint protein CHL12/CTF18 [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=99.28 E-value=1.2e-10 Score=124.12 Aligned_cols=206 Identities=20% Similarity=0.243 Sum_probs=133.3
Q ss_pred ccCCCCCCccccChHHHHHHHH-HHHHhhc--------h----------------hhcCCCC-cceEEecCCCCchHHHH
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQ-LSGATAN--------T----------------KAHNAPF-RNMLFYGPPGTGKTMAA 285 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~-~~~~~~~--------~----------------~~~~~p~-~~vLL~GppGtGKT~lA 285 (512)
++.+..|.+++|.+..-..+.. +...-.. . ...++|+ +-+||+||||-||||||
T Consensus 264 ky~Pk~FtdLLsDe~tNR~~L~WLK~WD~~VFg~~vsrl~~s~~~~~ke~~~~~~~~s~RP~kKilLL~GppGlGKTTLA 343 (877)
T KOG1969|consen 264 KYRPKKFTDLLSDEKTNRRMLGWLKQWDPCVFGQKVSRLLASKGPTEKEVLDMELDPSKRPPKKILLLCGPPGLGKTTLA 343 (877)
T ss_pred ccChhHHHHHhcchhHHHHHHHHHHhhcHHhhcchHhhhccccccchhhhhhcccCccCCCccceEEeecCCCCChhHHH
Confidence 5677889999998887766643 3221110 0 0112333 46899999999999999
Q ss_pred HHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH
Q 010366 286 RELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 362 (512)
Q Consensus 286 ~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 362 (512)
+.+|++.|+.++.||.++-... ....+.+......-... .+|..|+|||||-- ....-.++..++..
T Consensus 344 HViAkqaGYsVvEINASDeRt~-~~v~~kI~~avq~~s~l~adsrP~CLViDEIDGa---------~~~~Vdvilslv~a 413 (877)
T KOG1969|consen 344 HVIAKQAGYSVVEINASDERTA-PMVKEKIENAVQNHSVLDADSRPVCLVIDEIDGA---------PRAAVDVILSLVKA 413 (877)
T ss_pred HHHHHhcCceEEEecccccccH-HHHHHHHHHHHhhccccccCCCcceEEEecccCC---------cHHHHHHHHHHHHh
Confidence 9999999999999999885431 11222333332221111 45788999999962 22334444444442
Q ss_pred c-----CCCC-------------CCEEEEEeeCCCCCCCHHHH--ccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCC
Q 010366 363 T-----GDQS-------------KDIVLALATNRPGDLDSAVA--DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSR 422 (512)
Q Consensus 363 ~-----~~~~-------------~~viiI~ttN~~~~l~~al~--~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~ 422 (512)
. +... -.-.||+.||..- -|+|. +-|..++.|.+|+..-..+=|+..+......
T Consensus 414 ~~k~~~Gkq~~~~~~rkkkr~~~L~RPIICICNdLY--aPaLR~Lr~~A~ii~f~~p~~s~Lv~RL~~IC~rE~mr---- 487 (877)
T KOG1969|consen 414 TNKQATGKQAKKDKKRKKKRSKLLTRPIICICNDLY--APALRPLRPFAEIIAFVPPSQSRLVERLNEICHRENMR---- 487 (877)
T ss_pred hcchhhcCcccchhhhhhhccccccCCEEEEecCcc--chhhhhcccceEEEEecCCChhHHHHHHHHHHhhhcCC----
Confidence 1 1111 0135788888744 45554 4677899999999988776666666553322
Q ss_pred CCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCC
Q 010366 423 KPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGS 477 (512)
Q Consensus 423 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~ 477 (512)
++...|..|++.+.+ ||+..++.+|-.+...
T Consensus 488 --------------------~d~~aL~~L~el~~~----DIRsCINtLQfLa~~~ 518 (877)
T KOG1969|consen 488 --------------------ADSKALNALCELTQN----DIRSCINTLQFLASNV 518 (877)
T ss_pred --------------------CCHHHHHHHHHHhcc----hHHHHHHHHHHHHHhc
Confidence 677789999988866 8999998888766543
No 206
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=99.27 E-value=1.2e-10 Score=117.26 Aligned_cols=191 Identities=20% Similarity=0.305 Sum_probs=122.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC---CchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhc
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~---~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~ 343 (512)
++||.||+|+|||.||+.||+.++.||+..+|..+.. .|.+.+.-+..++..|.- ....+||||||+|++....
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIcDcTtLTQAGYVGeDVEsvi~KLl~~A~~nVekAQqGIVflDEvDKi~~~~ 307 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAICDCTTLTQAGYVGEDVESVIQKLLQEAEYNVEKAQQGIVFLDEVDKITKKA 307 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEecccchhhcccccccHHHHHHHHHHHccCCHHHHhcCeEEEehhhhhcccC
Confidence 7999999999999999999999999999999988754 333444556666655431 1235799999999997544
Q ss_pred ccCC-----CCHHHHHHHHHHHHHcC----C--------------CCCCEEEEEeeCC--------------------C-
Q 010366 344 NKTY-----MSEAQRSALNALLFRTG----D--------------QSKDIVLALATNR--------------------P- 379 (512)
Q Consensus 344 ~~~~-----~~~~~~~~l~~ll~~~~----~--------------~~~~viiI~ttN~--------------------~- 379 (512)
.+.. ..+..++.|..++...- + +..+++||+..-. +
T Consensus 308 ~~i~~~RDVsGEGVQQaLLKllEGtvVnVpeK~~~~~~rgd~vqiDTtnILFiasGAF~~Ldk~I~rR~~d~slGFg~~s 387 (564)
T KOG0745|consen 308 ESIHTSRDVSGEGVQQALLKLLEGTVVNVPEKGSRRKPRGDTVQIDTTNILFIASGAFVGLDKIISRRLDDKSLGFGAPS 387 (564)
T ss_pred ccccccccccchhHHHHHHHHhcccEEcccCCCCCCCCCCCeEEEeccceEEEecccccchHHHHHHhhcchhcccCCCC
Confidence 3221 13455666666665320 0 2335666654210 0
Q ss_pred -----------C------------------------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCC
Q 010366 380 -----------G------------------------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKP 424 (512)
Q Consensus 380 -----------~------------------------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~ 424 (512)
. .+-|+|..||+.++.|..++.++...|+..=-+.+..+
T Consensus 388 ~~~vr~~~~~~s~~~~~~~~~~~lL~~~~~~DLisfGmIPEfVGRfPVlVplh~L~~~~Lv~VLtEPknaL~~Q------ 461 (564)
T KOG0745|consen 388 SKGVRANMATKSGVENDAEKRDELLEKVESGDLISFGMIPEFVGRFPVLVPLHSLDEDQLVRVLTEPKNALGKQ------ 461 (564)
T ss_pred CccchhhcccccCcchhHHHHHHHHhhccccchhhhcCcHHHhcccceEeeccccCHHHHHHHHhcchhhHHHH------
Confidence 0 12388999999999999999999998875322222111
Q ss_pred cchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCCcHHHHHHHHHHHH
Q 010366 425 GLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLMASVQ 471 (512)
Q Consensus 425 ~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~s~~dI~~lv~~~~ 471 (512)
..+++.-+...+ .+++.+++.||+.. .+--.|-|+.++..+.
T Consensus 462 --yk~lf~~~nV~L---~fTe~Al~~IAq~Al~r~TGARgLRsIlE~~L 505 (564)
T KOG0745|consen 462 --YKKLFGMDNVEL---HFTEKALEAIAQLALKRKTGARGLRSILESLL 505 (564)
T ss_pred --HHHHhccCCeeE---EecHHHHHHHHHHHHhhccchHHHHHHHHHHH
Confidence 011111111112 37899999999873 2333578888885443
No 207
>PRK09862 putative ATP-dependent protease; Provisional
Probab=99.27 E-value=8.4e-11 Score=124.90 Aligned_cols=233 Identities=21% Similarity=0.212 Sum_probs=132.8
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------eEEEeCC---
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD----------YALMTGG--- 302 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~----------~~~v~~~--- 302 (512)
..|.+++|+..++..+.-.. ....+++|+||||||||++++.++..+... ++.+.+.
T Consensus 188 ~d~~~v~Gq~~~~~al~laa----------~~G~~llliG~~GsGKTtLak~L~gllpp~~g~e~le~~~i~s~~g~~~~ 257 (506)
T PRK09862 188 HDLSDVIGQEQGKRGLEITA----------AGGHNLLLIGPPGTGKTMLASRINGLLPDLSNEEALESAAILSLVNAESV 257 (506)
T ss_pred cCeEEEECcHHHHhhhheec----------cCCcEEEEECCCCCcHHHHHHHHhccCCCCCCcEEEecchhhhhhccccc
Confidence 36888899887777653211 122479999999999999999998765311 1111110
Q ss_pred -------CCC-CCchhHHHH-H-------HHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--
Q 010366 303 -------DVA-PLGPQAVTK-I-------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-- 364 (512)
Q Consensus 303 -------~~~-~~~~~~~~~-l-------~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-- 364 (512)
.+. +....+... + ...+..| .+++|||||++.+ +......|...+..-.
T Consensus 258 ~~~~~~rPfr~ph~~~s~~~l~GGg~~~~pG~l~~A----~gGvLfLDEi~e~---------~~~~~~~L~~~LE~g~v~ 324 (506)
T PRK09862 258 QKQWRQRPFRSPHHSASLTAMVGGGAIPGPGEISLA----HNGVLFLDELPEF---------ERRTLDALREPIESGQIH 324 (506)
T ss_pred cCCcCCCCccCCCccchHHHHhCCCceehhhHhhhc----cCCEEecCCchhC---------CHHHHHHHHHHHHcCcEE
Confidence 000 000001000 0 1122222 3689999999885 4444555555543211
Q ss_pred --------CCCCCEEEEEeeCCCC---------------------CCCHHHHccccceeecCCCCHHHHH----------
Q 010366 365 --------DQSKDIVLALATNRPG---------------------DLDSAVADRIDEVLEFPLPGQEERF---------- 405 (512)
Q Consensus 365 --------~~~~~viiI~ttN~~~---------------------~l~~al~~R~~~~i~~~~p~~~er~---------- 405 (512)
..+.++.+|+|+|... .++.++++|||..+.+++|+.++..
T Consensus 325 I~r~g~~~~~pa~f~lIAa~NP~pcG~~~~~~c~c~~~~~~~Y~~~ls~plLDRfdL~v~v~~~~~~~l~~~~~~~ess~ 404 (506)
T PRK09862 325 LSRTRAKITYPARFQLVAAMNPSPTGHYQGNHNRCTPEQTLRYLNRLSGPFLDRFDLSLEIPLPPPGILSKTVVPGESSA 404 (506)
T ss_pred EecCCcceeccCCEEEEEeecCccceecCCCCCCcCHHHHHHHHhhCCHhHHhhccEEEEeCCCCHHHHhcccCCCCChH
Confidence 1355799999999742 4778999999999999998754321
Q ss_pred HHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHH--HHcCCCcHHHHHHHHHHHHHHHhCCCCCccC
Q 010366 406 KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAA--AKTEGFSGREIAKLMASVQAAVYGSENCVLD 483 (512)
Q Consensus 406 ~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la--~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it 483 (512)
.|-+........+... .......+....-... -.++++....+. ....|.|+|....++..+++.+.-.+...|+
T Consensus 405 ~i~~rV~~ar~~q~~r-~~~~n~~l~~~~l~~~--~~l~~~~~~~l~~~~~~~~lS~Ra~~rlLrvARTiADL~g~~~V~ 481 (506)
T PRK09862 405 TVKQRVMAARERQFKR-QNKLNAWLDSPEIRQF--CKLESEDARWLEETLIHLGLSIRAWQRLLKVARTIADIDQSDIIT 481 (506)
T ss_pred HHHHHHhhHHHHHHHH-HHHHhcccCHHHHHHH--hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHcCCCCCC
Confidence 1211111000000000 0000000000000010 123444433322 2345899999999999999999888889999
Q ss_pred HHHHHHHHHHH
Q 010366 484 PSLFREVVDYK 494 (512)
Q Consensus 484 ~e~~~~al~~~ 494 (512)
.+|+.+|+.+-
T Consensus 482 ~~hv~eAl~yR 492 (506)
T PRK09862 482 RQHLQEAVSYR 492 (506)
T ss_pred HHHHHHHHHhh
Confidence 99999999875
No 208
>PF01078 Mg_chelatase: Magnesium chelatase, subunit ChlI; InterPro: IPR000523 Magnesium-chelatase is a three-component enzyme that catalyses the insertion of Mg2+ into protoporphyrin IX. This is the first unique step in the synthesis of (bacterio)chlorophyll. As a result, it is thought that Mg-chelatase has an important role in channeling intermediates into the (bacterio)chlorophyll branch in response to conditions suitable for photosynthetic growth. ChlI and BchD have molecular weights between 38-42 kDa.; GO: 0016851 magnesium chelatase activity, 0015979 photosynthesis, 0015995 chlorophyll biosynthetic process; PDB: 2X31_J 1G8P_A 3K1J_B.
Probab=99.26 E-value=1.3e-12 Score=122.14 Aligned_cols=142 Identities=27% Similarity=0.356 Sum_probs=63.0
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------eEEEeC-----
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD----------YALMTG----- 301 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~----------~~~v~~----- 301 (512)
+|.+|+|++.++.++.-.+. + ..++||+||||||||++|+.+..-+..- ++.+.+
T Consensus 1 Df~dI~GQe~aKrAL~iAAa--------G--~h~lLl~GppGtGKTmlA~~l~~lLP~l~~~e~le~~~i~s~~~~~~~~ 70 (206)
T PF01078_consen 1 DFSDIVGQEEAKRALEIAAA--------G--GHHLLLIGPPGTGKTMLARRLPSLLPPLTEEEALEVSKIYSVAGLGPDE 70 (206)
T ss_dssp -TCCSSSTHHHHHHHHHHHH--------C--C--EEEES-CCCTHHHHHHHHHHCS--CCEECCESS--S-TT---S---
T ss_pred ChhhhcCcHHHHHHHHHHHc--------C--CCCeEEECCCCCCHHHHHHHHHHhCCCCchHHHhhhccccccccCCCCC
Confidence 38999999999999854331 1 2489999999999999999998776310 000000
Q ss_pred -----CCCCC-CchhHHHHHHHHHHHHH-------hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----
Q 010366 302 -----GDVAP-LGPQAVTKIHQLFDWAK-------KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---- 364 (512)
Q Consensus 302 -----~~~~~-~~~~~~~~l~~lf~~a~-------~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~---- 364 (512)
..+.. ....+. ..++.-.. .....+||||||+..+ ...++..|++.++
T Consensus 71 ~~~~~~Pfr~phhs~s~---~~liGgg~~~~PGeislAh~GVLflDE~~ef------------~~~vld~Lr~ple~g~v 135 (206)
T PF01078_consen 71 GLIRQRPFRAPHHSASE---AALIGGGRPPRPGEISLAHRGVLFLDELNEF------------DRSVLDALRQPLEDGEV 135 (206)
T ss_dssp EEEE---EEEE-TT--H---HHHHEEGGGEEE-CGGGGTTSEEEECETTTS-------------HHHHHHHHHHHHHSBE
T ss_pred ceecCCCcccCCCCcCH---HHHhCCCcCCCcCHHHHhcCCEEEechhhhc------------CHHHHHHHHHHHHCCeE
Confidence 00000 000011 11111000 0112579999999885 3445555555543
Q ss_pred ---------CCCCCEEEEEeeCC-----------------------CCCCCHHHHccccceeecCCCCHHH
Q 010366 365 ---------DQSKDIVLALATNR-----------------------PGDLDSAVADRIDEVLEFPLPGQEE 403 (512)
Q Consensus 365 ---------~~~~~viiI~ttN~-----------------------~~~l~~al~~R~~~~i~~~~p~~~e 403 (512)
..+.++++|+|+|. ...+...+++|||..+.++..+.++
T Consensus 136 ~i~R~~~~~~~Pa~f~lv~a~NPcpCG~~~~~~~~C~Cs~~~~~~Y~~rlsgpllDRiDi~v~~~~~~~~~ 206 (206)
T PF01078_consen 136 TISRAGGSVTYPARFLLVAAMNPCPCGYYGDPDNRCRCSPRQIRRYQSRLSGPLLDRIDIHVEVPRVSYEE 206 (206)
T ss_dssp EEEETTEEEEEB--EEEEEEE-S------------------------------------------------
T ss_pred EEEECCceEEEecccEEEEEeccccccccccccccccccccccccccccccccccccccccccccccccCC
Confidence 14567999999986 1256778899999999998877653
No 209
>TIGR01818 ntrC nitrogen regulation protein NR(I). This model represents NtrC, a DNA-binding response regulator that is phosphorylated by NtrB and interacts with sigma-54. NtrC usually controls the expression of glutamine synthase, GlnA, and may be called GlnL, GlnG, etc.
Probab=99.26 E-value=1.1e-10 Score=124.83 Aligned_cols=306 Identities=16% Similarity=0.122 Sum_probs=174.9
Q ss_pred HhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhCC
Q 010366 119 LAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQ 198 (512)
Q Consensus 119 ~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 198 (512)
...|+.+.++.++.. ..++.+.......+.....+++........+..+..++.+++.+|.....+...+...+..
T Consensus 41 ~~~DlVllD~~~p~~----~g~~ll~~l~~~~~~~~vIvlt~~~~~~~~~~a~~~Ga~~~l~KP~~~~~L~~~i~~~l~~ 116 (463)
T TIGR01818 41 GQPDLLITDVRMPGE----DGLDLLPQIKKRHPQLPVIVMTAHSDLDTAVAAYQRGAFEYLPKPFDLDEAVTLVERALAH 116 (463)
T ss_pred CCCCEEEEcCCCCCC----CHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHcCcceeecCCCCHHHHHHHHHHHHHH
Confidence 346666665554432 2223332222222221222333333444455555666778888887777777766665432
Q ss_pred CCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCC
Q 010366 199 PSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPG 278 (512)
Q Consensus 199 ~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppG 278 (512)
....... . ........+..++|.......+...+...... . ..+++.|++|
T Consensus 117 ~~~~~~~-----~------------------~~~~~~~~~~~lig~s~~~~~v~~~i~~~a~~---~---~~vli~Ge~G 167 (463)
T TIGR01818 117 AQEQVAL-----P------------------ADAGEAEDSAELIGEAPAMQEVFRAIGRLSRS---D---ITVLINGESG 167 (463)
T ss_pred HHHHHhh-----h------------------hhhhccccccceeecCHHHHHHHHHHHHHhCc---C---CeEEEECCCC
Confidence 1100000 0 00000112356888887777665544332211 1 2599999999
Q ss_pred CchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHHHHH-------H-------HhcCCCcEEEEccchhhhh
Q 010366 279 TGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDW-------A-------KKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 279 tGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~lf~~-------a-------~~~~~~~vl~lDEid~l~~ 341 (512)
|||+++|+++.... +.+|+.++|..+..... .. .+|.. + .....+++|||||++.|
T Consensus 168 tGK~~~A~~ih~~~~~~~~~~~~~~c~~~~~~~~--~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~l~ei~~l-- 240 (463)
T TIGR01818 168 TGKELVARALHRHSPRANGPFIALNMAAIPKDLI--ES---ELFGHEKGAFTGANTRRQGRFEQADGGTLFLDEIGDM-- 240 (463)
T ss_pred CCHHHHHHHHHHhCCCCCCCeEEEeCCCCCHHHH--HH---HhcCCCCCCCCCcccCCCCcEEECCCCeEEEEchhhC--
Confidence 99999999998764 46899999988743110 00 11110 0 01123689999999997
Q ss_pred hcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCC-------CCCCHHHHcccc-ceeecCCCC--HHH
Q 010366 342 ERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRP-------GDLDSAVADRID-EVLEFPLPG--QEE 403 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~-------~~l~~al~~R~~-~~i~~~~p~--~~e 403 (512)
+...+..|..++..-. ....++.||+||+.. ..+.+.+..|+. ..|.+|++. .++
T Consensus 241 -------~~~~q~~ll~~l~~~~~~~~~~~~~~~~~~rii~~~~~~l~~~~~~~~f~~~L~~rl~~~~i~lPpLr~R~~D 313 (463)
T TIGR01818 241 -------PLDAQTRLLRVLADGEFYRVGGRTPIKVDVRIVAATHQNLEALVRQGKFREDLFHRLNVIRIHLPPLRERRED 313 (463)
T ss_pred -------CHHHHHHHHHHHhcCcEEECCCCceeeeeeEEEEeCCCCHHHHHHcCCcHHHHHHHhCcceecCCCcccchhh
Confidence 5566666666665321 112367889988763 367778888883 244555554 345
Q ss_pred HHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccC
Q 010366 404 RFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLD 483 (512)
Q Consensus 404 r~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it 483 (512)
+..++..++..+....+ .....++++++..|..+.+..+.++|++++..+...+ ....|+
T Consensus 314 i~~l~~~~l~~~~~~~~-----------------~~~~~~~~~a~~~L~~~~wpgNvreL~~~~~~~~~~~---~~~~i~ 373 (463)
T TIGR01818 314 IPRLARHFLALAARELD-----------------VEPKLLDPEALERLKQLRWPGNVRQLENLCRWLTVMA---SGDEVL 373 (463)
T ss_pred HHHHHHHHHHHHHHHhC-----------------CCCCCcCHHHHHHHHhCCCCChHHHHHHHHHHHHHhC---CCCccc
Confidence 55566666655432211 1113489999999999987778889988886554433 235677
Q ss_pred HHHHHHHH
Q 010366 484 PSLFREVV 491 (512)
Q Consensus 484 ~e~~~~al 491 (512)
.+++...+
T Consensus 374 ~~~l~~~~ 381 (463)
T TIGR01818 374 VSDLPAEL 381 (463)
T ss_pred HHhchHHH
Confidence 77775444
No 210
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=99.24 E-value=8.1e-11 Score=119.58 Aligned_cols=133 Identities=20% Similarity=0.249 Sum_probs=98.4
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC-------------------------eEEEeCCCCC--------------
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD-------------------------YALMTGGDVA-------------- 305 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~-------------------------~~~v~~~~~~-------------- 305 (512)
+..+.++||+||+|+||+++|+.+|..+.+. +..+......
T Consensus 18 ~rl~ha~Lf~Gp~G~GK~~lA~~~A~~LlC~~~~~~~~~Cg~C~~C~~~~~~~HPD~~~i~p~~~~~~~~~~~~~~~~~~ 97 (342)
T PRK06964 18 ARLPHALLLHGQAGIGKLDFAQHLAQGLLCETPQPDGEPCGTCAACNWFAQGNHPDYRIVRPEALAAEAPGAADEAKEAD 97 (342)
T ss_pred CCcceEEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecccccccccccccccccch
Confidence 3445689999999999999999999887432 1112111000
Q ss_pred --CC--------chhHHHHHHHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEE
Q 010366 306 --PL--------GPQAVTKIHQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 372 (512)
Q Consensus 306 --~~--------~~~~~~~l~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~vii 372 (512)
.. ..-....++.+...+... .++-|++||++|.+ ....-|.||..+++++.+++|
T Consensus 98 ~~~~~~k~~~~~~~I~idqiR~l~~~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~f 165 (342)
T PRK06964 98 ADEGGKKTKAPSKEIKIEQVRALLDFCGVGTHRGGARVVVLYPAEAL------------NVAAANALLKTLEEPPPGTVF 165 (342)
T ss_pred hhcccccccccccccCHHHHHHHHHHhccCCccCCceEEEEechhhc------------CHHHHHHHHHHhcCCCcCcEE
Confidence 00 011234556665554422 23469999999996 355678899999999999999
Q ss_pred EEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHH
Q 010366 373 ALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKL 410 (512)
Q Consensus 373 I~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~ 410 (512)
|++|+.++.+.|.++||+ ..+.|++|+.++..+.+..
T Consensus 166 iL~t~~~~~LLpTI~SRc-q~i~~~~~~~~~~~~~L~~ 202 (342)
T PRK06964 166 LLVSARIDRLLPTILSRC-RQFPMTVPAPEAAAAWLAA 202 (342)
T ss_pred EEEECChhhCcHHHHhcC-EEEEecCCCHHHHHHHHHH
Confidence 999999999999999999 8999999999999888765
No 211
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=99.23 E-value=2.7e-10 Score=114.76 Aligned_cols=132 Identities=20% Similarity=0.193 Sum_probs=98.3
Q ss_pred cCCCCcceEEecCCCCchHHHHHHHHHHhCC-----------------------CeEEEeCCCCCCCchhHHHHHHHHHH
Q 010366 264 HNAPFRNMLFYGPPGTGKTMAARELARKSGL-----------------------DYALMTGGDVAPLGPQAVTKIHQLFD 320 (512)
Q Consensus 264 ~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-----------------------~~~~v~~~~~~~~~~~~~~~l~~lf~ 320 (512)
.+..+..+||+||.|+||+++|+.+|..+-+ +++.+....-.. .-..+.++.+.+
T Consensus 21 ~~rl~hA~L~~G~~G~Gk~~lA~~~a~~llC~~~~~~~Cg~C~sC~~~~~g~HPD~~~i~p~~~~~--~I~vdqiR~l~~ 98 (319)
T PRK06090 21 AGRIPGALLLQSDEGLGVESLVELFSRALLCQNYQSEACGFCHSCELMQSGNHPDLHVIKPEKEGK--SITVEQIRQCNR 98 (319)
T ss_pred cCCcceeEeeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHHHHHcCCCCCEEEEecCcCCC--cCCHHHHHHHHH
Confidence 3445568999999999999999999988632 133332211000 012344555544
Q ss_pred HHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecC
Q 010366 321 WAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 321 ~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~ 397 (512)
.+.. ...+-|++||++|.+ ....-|.||..+++++.+++||++|+.++.+-|.++||+ ..+.|+
T Consensus 99 ~~~~~~~~~~~kV~iI~~ae~m------------~~~AaNaLLKtLEEPp~~t~fiL~t~~~~~lLpTI~SRC-q~~~~~ 165 (319)
T PRK06090 99 LAQESSQLNGYRLFVIEPADAM------------NESASNALLKTLEEPAPNCLFLLVTHNQKRLLPTIVSRC-QQWVVT 165 (319)
T ss_pred HHhhCcccCCceEEEecchhhh------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhChHHHHhcc-eeEeCC
Confidence 4432 233569999999996 355778999999999999999999999999999999999 899999
Q ss_pred CCCHHHHHHHHHH
Q 010366 398 LPGQEERFKLLKL 410 (512)
Q Consensus 398 ~p~~~er~~Il~~ 410 (512)
+|+.++..+.+..
T Consensus 166 ~~~~~~~~~~L~~ 178 (319)
T PRK06090 166 PPSTAQAMQWLKG 178 (319)
T ss_pred CCCHHHHHHHHHH
Confidence 9999998887764
No 212
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=99.23 E-value=2.6e-10 Score=122.98 Aligned_cols=203 Identities=28% Similarity=0.403 Sum_probs=155.9
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhc
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~ 343 (512)
..|+.+++++||||||||++++++|.. +..+..+++..... +.+.+...+..+|..+.... ++++++|+++.+.+.+
T Consensus 15 ~~~~~~v~~~g~~~~~~t~~~~~~a~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~-~~ii~~d~~~~~~~~~ 92 (494)
T COG0464 15 IEPPKGVLLHGPPGTGKTLLARALANE-GAEFLSINGPEILSKYVGESELRLRELFEEAEKLA-PSIIFIDEIDALAPKR 92 (494)
T ss_pred CCCCCCceeeCCCCCchhHHHHHHHhc-cCcccccCcchhhhhhhhHHHHHHHHHHHHHHHhC-CCeEeechhhhcccCc
Confidence 457789999999999999999999998 65556666655543 67778889999999999887 5899999999999888
Q ss_pred ccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhh
Q 010366 344 NKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQA 419 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~ 419 (512)
.. ........+...++..++ .... ++++..+|.+..+++++.+ ||+..+.++.|+...+..|+.........
T Consensus 93 ~~-~~~~~~~~v~~~l~~~~d~~~~~~-v~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ei~~~~~~~~~~-- 168 (494)
T COG0464 93 SS-DQGEVERRVVAQLLALMDGLKRGQ-VIVIGATNRPDGLDPAKRRPGRFDREIEVNLPDEAGRLEILQIHTRLMFL-- 168 (494)
T ss_pred cc-cccchhhHHHHHHHHhcccccCCc-eEEEeecCCccccChhHhCccccceeeecCCCCHHHHHHHHHHHHhcCCC--
Confidence 77 323344455555555443 1334 7778899999999999987 99999999999999998888877654321
Q ss_pred CCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH-hC-----CCCCccCHHHHHHHHHH
Q 010366 420 GSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV-YG-----SENCVLDPSLFREVVDY 493 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~-~~-----~~~~~it~e~~~~al~~ 493 (512)
..+..+..++..+.|++++++..++..+.... .. .....++.+++.++++.
T Consensus 169 -----------------------~~~~~~~~~a~~~~~~~~~~~~~l~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~l~~ 225 (494)
T COG0464 169 -----------------------GPPGTGKTLAARTVGKSGADLGALAKEAALRELRRAIDLVGEYIGVTEDDFEEALKK 225 (494)
T ss_pred -----------------------cccccHHHHHHhcCCccHHHHHHHHHHHHHHHHHhhhccCcccccccHHHHHHHHHh
Confidence 22556889999999999999999994433222 22 22356888899888887
Q ss_pred HHH
Q 010366 494 KVA 496 (512)
Q Consensus 494 ~~~ 496 (512)
...
T Consensus 226 ~~~ 228 (494)
T COG0464 226 VLP 228 (494)
T ss_pred cCc
Confidence 654
No 213
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=99.22 E-value=1.7e-10 Score=105.97 Aligned_cols=129 Identities=22% Similarity=0.308 Sum_probs=84.8
Q ss_pred cccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHH---
Q 010366 241 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTK--- 314 (512)
Q Consensus 241 vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~--- 314 (512)
+||.+..+..+.+.+...+... .+|||+|++||||+.+|++|.+.. +.||+.++|+.+.... ....
T Consensus 1 liG~s~~m~~~~~~~~~~a~~~------~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~~~~~~~--~e~~LFG 72 (168)
T PF00158_consen 1 LIGESPAMKRLREQAKRAASSD------LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCAALPEEL--LESELFG 72 (168)
T ss_dssp SS--SHHHHHHHHHHHHHTTST------S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETTTS-HHH--HHHHHHE
T ss_pred CEeCCHHHHHHHHHHHHHhCCC------CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehhhhhcch--hhhhhhc
Confidence 5788888888876665554333 359999999999999999998865 4799999999874311 0011
Q ss_pred ------------HHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc-----CC---CCCCEEEEE
Q 010366 315 ------------IHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-----GD---QSKDIVLAL 374 (512)
Q Consensus 315 ------------l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~~---~~~~viiI~ 374 (512)
-..++..|. +++||||||+.| +...+..|..+++.- +. ...++.||+
T Consensus 73 ~~~~~~~~~~~~~~G~l~~A~----~GtL~Ld~I~~L---------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~RiI~ 139 (168)
T PF00158_consen 73 HEKGAFTGARSDKKGLLEQAN----GGTLFLDEIEDL---------PPELQAKLLRVLEEGKFTRLGSDKPVPVDVRIIA 139 (168)
T ss_dssp BCSSSSTTTSSEBEHHHHHTT----TSEEEEETGGGS----------HHHHHHHHHHHHHSEEECCTSSSEEE--EEEEE
T ss_pred cccccccccccccCCceeecc----ceEEeecchhhh---------HHHHHHHHHHHHhhchhccccccccccccceEEe
Confidence 012444333 789999999997 667788888888752 11 234799999
Q ss_pred eeCCC-------CCCCHHHHccc
Q 010366 375 ATNRP-------GDLDSAVADRI 390 (512)
Q Consensus 375 ttN~~-------~~l~~al~~R~ 390 (512)
||+.+ ..+.+.|.-|+
T Consensus 140 st~~~l~~~v~~g~fr~dLy~rL 162 (168)
T PF00158_consen 140 STSKDLEELVEQGRFREDLYYRL 162 (168)
T ss_dssp EESS-HHHHHHTTSS-HHHHHHH
T ss_pred ecCcCHHHHHHcCCChHHHHHHh
Confidence 99874 46777777776
No 214
>PRK11331 5-methylcytosine-specific restriction enzyme subunit McrB; Provisional
Probab=99.21 E-value=1.8e-10 Score=119.59 Aligned_cols=142 Identities=17% Similarity=0.219 Sum_probs=85.3
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC-----eEEEeCC------CCC-
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD-----YALMTGG------DVA- 305 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~-----~~~v~~~------~~~- 305 (512)
++++++.++..+.+...+. ..++++|+||||||||++|+.+|..+... +..+..+ ++.
T Consensus 174 l~d~~i~e~~le~l~~~L~----------~~~~iil~GppGtGKT~lA~~la~~l~~~~~~~~v~~VtFHpsySYeDFI~ 243 (459)
T PRK11331 174 LNDLFIPETTIETILKRLT----------IKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYEDFIQ 243 (459)
T ss_pred hhcccCCHHHHHHHHHHHh----------cCCCEEEECCCCCCHHHHHHHHHHHhcCCcccceeeEEeecccccHHHHhc
Confidence 5677777777766644332 12479999999999999999999987531 1111111 110
Q ss_pred CC--chhHH----HHHHHHHHHHHhc-CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------------
Q 010366 306 PL--GPQAV----TKIHQLFDWAKKS-KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-------------- 364 (512)
Q Consensus 306 ~~--~~~~~----~~l~~lf~~a~~~-~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-------------- 364 (512)
.. .+... ..+..+...|... ..+.+|||||++..-. ..++..++..++
T Consensus 244 G~rP~~vgy~~~~G~f~~~~~~A~~~p~~~~vliIDEINRani-----------~kiFGel~~lLE~~~rg~~~~v~l~y 312 (459)
T PRK11331 244 GYRPNGVGFRRKDGIFYNFCQQAKEQPEKKYVFIIDEINRANL-----------SKVFGEVMMLMEHDKRGENWSVPLTY 312 (459)
T ss_pred ccCCCCCCeEecCchHHHHHHHHHhcccCCcEEEEehhhccCH-----------HHhhhhhhhhccccccccccceeeec
Confidence 00 10000 1223344455443 2478999999998421 112222222111
Q ss_pred --------CCCCCEEEEEeeCCCC----CCCHHHHccccceeecCC-CCH
Q 010366 365 --------DQSKDIVLALATNRPG----DLDSAVADRIDEVLEFPL-PGQ 401 (512)
Q Consensus 365 --------~~~~~viiI~ttN~~~----~l~~al~~R~~~~i~~~~-p~~ 401 (512)
..+.++.||+|+|..+ .+|.|++||| ..|.+.+ ++.
T Consensus 313 ~e~d~e~f~iP~Nl~IIgTMNt~Drs~~~lD~AlrRRF-~fi~i~p~~~~ 361 (459)
T PRK11331 313 SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRF-SFIDIEPGFDT 361 (459)
T ss_pred cccccccccCCCCeEEEEecCccccchhhccHHHHhhh-heEEecCCCCh
Confidence 1356899999999977 7999999999 6677665 343
No 215
>PTZ00111 DNA replication licensing factor MCM4; Provisional
Probab=99.21 E-value=9.1e-10 Score=122.36 Aligned_cols=216 Identities=14% Similarity=0.093 Sum_probs=127.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCC-------CeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhh
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGL-------DYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~-------~~~~v~~~~~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~ 341 (512)
+|||+|+||||||.+|++++..... ++..+.+..... ....+... .+-.-+.....+++++|||++.+
T Consensus 494 hVLLvGDPGTGKSqLAr~Ih~lspR~~ytsG~~~s~vgLTa~~~~~d~~tG~~--~le~GaLvlAdgGtL~IDEidkm-- 569 (915)
T PTZ00111 494 NVLLCGDPGTAKSQLLHYTHLLSPRSIYTSGKSSSSVGLTASIKFNESDNGRA--MIQPGAVVLANGGVCCIDELDKC-- 569 (915)
T ss_pred eEEEeCCCCccHHHHHHHHHHhCCccccCCCCCCccccccchhhhcccccCcc--cccCCcEEEcCCCeEEecchhhC--
Confidence 7999999999999999999886432 222222211110 00000000 00000111223679999999996
Q ss_pred hcccCCCCHHHHHHHHHHHHHc----C------CCCCCEEEEEeeCCCC-------------CCCHHHHcccccee-ecC
Q 010366 342 ERNKTYMSEAQRSALNALLFRT----G------DQSKDIVLALATNRPG-------------DLDSAVADRIDEVL-EFP 397 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~----~------~~~~~viiI~ttN~~~-------------~l~~al~~R~~~~i-~~~ 397 (512)
+...+..|..++..- . ..+.++.||+|+|... .+++++++|||.++ .++
T Consensus 570 -------s~~~Q~aLlEaMEqqtIsI~KaGi~~tL~ar~rVIAAaNP~~gryd~~~s~~eni~Lp~~LLSRFDLIf~l~D 642 (915)
T PTZ00111 570 -------HNESRLSLYEVMEQQTVTIAKAGIVATLKAETAILASCNPINSRYNKNKAVIENINISPSLFTRFDLIYLVLD 642 (915)
T ss_pred -------CHHHHHHHHHHHhCCEEEEecCCcceecCCCeEEEEEcCCcccccCcccCcccccCCChHHhhhhcEEEEecC
Confidence 556666666666431 1 1245789999999842 47899999998775 567
Q ss_pred CCCHHHHHHHHHHHHHHHhhhh----CC--------------------------CCCcchhhhhhhhhhhhhhcCCCHHH
Q 010366 398 LPGQEERFKLLKLYLDKYIAQA----GS--------------------------RKPGLVHRLFKSEQQKIEIKGLTDDI 447 (512)
Q Consensus 398 ~p~~~er~~Il~~~l~~~~~~~----~~--------------------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
.|+.+.=..|..+.+..+.... .. .....+.+++.- ......+.+++++
T Consensus 643 ~~d~~~D~~lA~hI~~~~~~~h~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~lLrkYI~Y-AR~~~~P~Ls~eA 721 (915)
T PTZ00111 643 HIDQDTDQLISLSIAKDFLLPHMTGSGNDEDTYDRSNTMHVEDESLRSEKDYNKNDLDMLRMYIKF-SKLHCFPKLSDEA 721 (915)
T ss_pred CCChHHHHHHHHHHHHhhcccccccccccccchhccccccccccccccccccCCCCHHHHHHHHHH-HhccCCCCCCHHH
Confidence 7777665555555543321000 00 000111111111 1111234577776
Q ss_pred HHHHHHH-----c-------------------------------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 448 LMEAAAK-----T-------------------------------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 448 l~~la~~-----t-------------------------------~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
.+.|... . ...++|+|+.|++.+.|.|...-...++.+|+..|+
T Consensus 722 ~~~i~~~Yv~mR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~iT~RqLEsLIRLsEA~AK~rLs~~Vt~~Dv~~Ai 801 (915)
T PTZ00111 722 KKVITREYVKMRQGNFQTSNLDELEHAQEDDDDDLYYQSSGTRMIYVSSRMISSIIRISVSLARMRLSTVVTPADALQAV 801 (915)
T ss_pred HHHHHHHHHHHhhhhccccccccccccccccccccccccccCCcccccHHHHHHHHHHHHHHhhhcCcCcccHHHHHHHH
Confidence 6665441 1 125789999999999999988888999999999999
Q ss_pred HHHHHH
Q 010366 492 DYKVAE 497 (512)
Q Consensus 492 ~~~~~~ 497 (512)
.-....
T Consensus 802 ~L~~~s 807 (915)
T PTZ00111 802 QIVKSS 807 (915)
T ss_pred HHHHHH
Confidence 876433
No 216
>KOG1514 consensus Origin recognition complex, subunit 1, and related proteins [Replication, recombination and repair]
Probab=99.21 E-value=6e-10 Score=118.54 Aligned_cols=223 Identities=16% Similarity=0.163 Sum_probs=147.6
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC----------CCeEEEeCCCCCCCc
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----------LDYALMTGGDVAPLG 308 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~----------~~~~~v~~~~~~~~~ 308 (512)
+.+-..+.....|..++...-..... ...++++|-||||||.+++.+-+.+. .+|+.+|+-.+....
T Consensus 396 ~sLpcRe~E~~~I~~f~~~~i~~~~~---g~~mYIsGvPGtGKT~tV~~Vm~~Lq~~s~~~e~p~f~yveINgm~l~~~~ 472 (767)
T KOG1514|consen 396 ESLPCRENEFSEIEDFLRSFISDQGL---GSCMYISGVPGTGKTATVLEVMKELQTSSAQKELPKFDYVEINGLRLASPR 472 (767)
T ss_pred ccccchhHHHHHHHHHHHhhcCCCCC---ceeEEEecCCCCCceehHHHHHHHHHHHHhhcCCCCccEEEEcceeecCHH
Confidence 34445555555665555444333111 12699999999999999999977652 568888877764411
Q ss_pred -----------------hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEE
Q 010366 309 -----------------PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIV 371 (512)
Q Consensus 309 -----------------~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~vi 371 (512)
..+.+.+..-|.......+++||+|||.|.|+.. .+.++..++....-...+++
T Consensus 473 ~~Y~~I~~~lsg~~~~~~~al~~L~~~f~~~k~~~~~~VvLiDElD~Lvtr---------~QdVlYn~fdWpt~~~sKLv 543 (767)
T KOG1514|consen 473 EIYEKIWEALSGERVTWDAALEALNFRFTVPKPKRSTTVVLIDELDILVTR---------SQDVLYNIFDWPTLKNSKLV 543 (767)
T ss_pred HHHHHHHHhcccCcccHHHHHHHHHHhhccCCCCCCCEEEEeccHHHHhcc---------cHHHHHHHhcCCcCCCCceE
Confidence 1122334444443334456789999999999643 36788888887766777888
Q ss_pred EEEeeCCCCCC----CHHHHcccc-ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHH
Q 010366 372 LALATNRPGDL----DSAVADRID-EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDD 446 (512)
Q Consensus 372 iI~ttN~~~~l----~~al~~R~~-~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 446 (512)
||+.+|..+.. .+.+-+|++ ..+.|.+++..+..+|+..++.... .+...
T Consensus 544 vi~IaNTmdlPEr~l~nrvsSRlg~tRi~F~pYth~qLq~Ii~~RL~~~~-------------------------~f~~~ 598 (767)
T KOG1514|consen 544 VIAIANTMDLPERLLMNRVSSRLGLTRICFQPYTHEQLQEIISARLKGLD-------------------------AFENK 598 (767)
T ss_pred EEEecccccCHHHHhccchhhhccceeeecCCCCHHHHHHHHHHhhcchh-------------------------hcchh
Confidence 88887775533 334445765 5689999999999999999987652 26677
Q ss_pred HHHHHHHHcCCCcHHHHH--HHHHHHHHHHhCCCC-------CccCHHHHHHHHHHHHHHH
Q 010366 447 ILMEAAAKTEGFSGREIA--KLMASVQAAVYGSEN-------CVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 447 ~l~~la~~t~g~s~~dI~--~lv~~~~aa~~~~~~-------~~it~e~~~~al~~~~~~~ 498 (512)
+++.+|.+....||..-+ .+|.++...+..... ..++.-|+.+|+..+...+
T Consensus 599 aielvarkVAavSGDaRraldic~RA~Eia~~~~~~~k~~~~q~v~~~~v~~Ai~em~~~~ 659 (767)
T KOG1514|consen 599 AIELVARKVAAVSGDARRALDICRRAAEIAEERNVKGKLAVSQLVGILHVMEAINEMLASP 659 (767)
T ss_pred HHHHHHHHHHhccccHHHHHHHHHHHHHHhhhhcccccccccceeehHHHHHHHHHHhhhh
Confidence 788788777666663332 344444333332222 4589999999998876554
No 217
>PRK08116 hypothetical protein; Validated
Probab=99.20 E-value=6.9e-11 Score=116.89 Aligned_cols=164 Identities=17% Similarity=0.135 Sum_probs=93.2
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhH
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~ 311 (512)
..+|++++..+.....+..+...............+++|+||||||||+||.++++.+ +.++++++.+++......+
T Consensus 81 ~~tFdnf~~~~~~~~a~~~a~~y~~~~~~~~~~~~gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~~~~~ll~~i~~~ 160 (268)
T PRK08116 81 NSTFENFLFDKGSEKAYKIARKYVKKFEEMKKENVGLLLWGSVGTGKTYLAACIANELIEKGVPVIFVNFPQLLNRIKST 160 (268)
T ss_pred hcchhcccCChHHHHHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHH
Confidence 3457887755555444443333333322222233469999999999999999999986 6788888765543211000
Q ss_pred -----HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC-----C
Q 010366 312 -----VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG-----D 381 (512)
Q Consensus 312 -----~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~-----~ 381 (512)
......++.. .....+|+|||++..- .++.....+..+++... ..+..+|.|||.+. .
T Consensus 161 ~~~~~~~~~~~~~~~---l~~~dlLviDDlg~e~-------~t~~~~~~l~~iin~r~--~~~~~~IiTsN~~~~eL~~~ 228 (268)
T PRK08116 161 YKSSGKEDENEIIRS---LVNADLLILDDLGAER-------DTEWAREKVYNIIDSRY--RKGLPTIVTTNLSLEELKNQ 228 (268)
T ss_pred HhccccccHHHHHHH---hcCCCEEEEecccCCC-------CCHHHHHHHHHHHHHHH--HCCCCEEEECCCCHHHHHHH
Confidence 0011122222 2336799999996521 12344445555555432 23345788888742 2
Q ss_pred CCHHHHccc---cceeecCCCCHHHHHHHHHHHH
Q 010366 382 LDSAVADRI---DEVLEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 382 l~~al~~R~---~~~i~~~~p~~~er~~Il~~~l 412 (512)
++..+.+|+ ...|.|+.|+. |..+.+..+
T Consensus 229 ~~~ri~sRl~e~~~~v~~~g~d~--R~~~~~ek~ 260 (268)
T PRK08116 229 YGKRIYDRILEMCTPVENEGKSY--RKEIAKEKL 260 (268)
T ss_pred HhHHHHHHHHHcCEEEEeeCcCh--hHHHHHHHH
Confidence 577888885 24456666654 555555444
No 218
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=99.18 E-value=2.5e-10 Score=99.90 Aligned_cols=122 Identities=26% Similarity=0.336 Sum_probs=79.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC---eEEEeCCCCCC---------------CchhHHHHHHHHHHHHHhcCCCcE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAP---------------LGPQAVTKIHQLFDWAKKSKRGLL 330 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~---~~~v~~~~~~~---------------~~~~~~~~l~~lf~~a~~~~~~~v 330 (512)
.+++|+||||||||++++.+|..+... ++++++..... ...........++..+.... +.+
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v 81 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDILEEVLDQLLLIIVGGKKASGSGELRLRLALALARKLK-PDV 81 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEccccCHHHHHhhhhhccCCCCCHHHHHHHHHHHHHhcC-CCE
Confidence 479999999999999999999998865 77777765432 11233445667777777655 689
Q ss_pred EEEccchhhhhhcccCCCCHHHHHHHHH----HHHHcCCCCCCEEEEEeeCC-CCCCCHHHHccccceeecCCC
Q 010366 331 LFIDEADAFLCERNKTYMSEAQRSALNA----LLFRTGDQSKDIVLALATNR-PGDLDSAVADRIDEVLEFPLP 399 (512)
Q Consensus 331 l~lDEid~l~~~~~~~~~~~~~~~~l~~----ll~~~~~~~~~viiI~ttN~-~~~l~~al~~R~~~~i~~~~p 399 (512)
|+|||++.+..... ...... ..........+..+|+++|. ....+..+..|++..+.++.+
T Consensus 82 iiiDei~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~ 147 (148)
T smart00382 82 LILDEITSLLDAEQ--------EALLLLLEELRLLLLLKSEKNLTVILTTNDEKDLGPALLRRRFDRRIVLLLI 147 (148)
T ss_pred EEEECCcccCCHHH--------HHHHHhhhhhHHHHHHHhcCCCEEEEEeCCCccCchhhhhhccceEEEecCC
Confidence 99999999743221 111110 00011123556788888886 344445555588777777654
No 219
>COG3283 TyrR Transcriptional regulator of aromatic amino acids metabolism [Transcription / Amino acid transport and metabolism]
Probab=99.18 E-value=4.8e-10 Score=110.64 Aligned_cols=210 Identities=19% Similarity=0.248 Sum_probs=146.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
......|+.+|+.+..++.+..-....+.... | +||.|.+||||-.+|++..... ..||+.+||..++...
T Consensus 197 ~~~~~~F~~~v~~S~~mk~~v~qA~k~AmlDA---P---LLI~GeTGTGKdLlAkaCH~~S~R~~~pFlalNCA~lPe~~ 270 (511)
T COG3283 197 AQDVSGFEQIVAVSPKMKHVVEQAQKLAMLDA---P---LLITGETGTGKDLLAKACHLASPRHSKPFLALNCASLPEDA 270 (511)
T ss_pred cccccchHHHhhccHHHHHHHHHHHHhhccCC---C---eEEecCCCchHHHHHHHHhhcCcccCCCeeEeecCCCchhH
Confidence 45667899999998888777554444444333 3 9999999999999999875543 5899999999987643
Q ss_pred hhHH--------HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc-----C---CCCCCEEE
Q 010366 309 PQAV--------TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-----G---DQSKDIVL 372 (512)
Q Consensus 309 ~~~~--------~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~---~~~~~vii 372 (512)
.+++ +--..+|+.|. ++.||||||..+ +...+..+..||+.- + +...+|.|
T Consensus 271 aEsElFG~apg~~gk~GffE~An----gGTVlLDeIgEm---------Sp~lQaKLLRFL~DGtFRRVGee~Ev~vdVRV 337 (511)
T COG3283 271 AESELFGHAPGDEGKKGFFEQAN----GGTVLLDEIGEM---------SPRLQAKLLRFLNDGTFRRVGEDHEVHVDVRV 337 (511)
T ss_pred hHHHHhcCCCCCCCccchhhhcc----CCeEEeehhhhc---------CHHHHHHHHHHhcCCceeecCCcceEEEEEEE
Confidence 3322 11234566554 679999999985 778888888888642 2 12346999
Q ss_pred EEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCH
Q 010366 373 ALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD 445 (512)
Q Consensus 373 I~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 445 (512)
|+||..+ ..+...+.-|+ .++.+..|...+|..-+.-....+..+.+ +..+...+.+++
T Consensus 338 Icatq~nL~~lv~~g~fReDLfyRL-NVLtl~~PpLRer~~di~pL~e~Fv~q~s-------------~elg~p~pkl~~ 403 (511)
T COG3283 338 ICATQVNLVELVQKGKFREDLFYRL-NVLTLNLPPLRERPQDIMPLAELFVQQFS-------------DELGVPRPKLAA 403 (511)
T ss_pred EecccccHHHHHhcCchHHHHHHHh-heeeecCCccccCcccchHHHHHHHHHHH-------------HHhCCCCCccCH
Confidence 9999653 45666777788 88888888888877655444443332211 122333356899
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 010366 446 DILMEAAAKTEGFSGREIAKLMASVQAAV 474 (512)
Q Consensus 446 ~~l~~la~~t~g~s~~dI~~lv~~~~aa~ 474 (512)
+.+..+..+-+..+.|++.+.+-.+.+..
T Consensus 404 ~~~~~L~~y~WpGNVRqL~N~iyRA~s~~ 432 (511)
T COG3283 404 DLLTVLTRYAWPGNVRQLKNAIYRALTLL 432 (511)
T ss_pred HHHHHHHHcCCCccHHHHHHHHHHHHHHh
Confidence 99999999988778899998885444433
No 220
>PRK12377 putative replication protein; Provisional
Probab=99.12 E-value=3.3e-10 Score=110.29 Aligned_cols=152 Identities=19% Similarity=0.225 Sum_probs=85.4
Q ss_pred CCCCCCccccC-hHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCch
Q 010366 234 NGNGFGDVILH-PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP 309 (512)
Q Consensus 234 ~~~~~~~vvg~-~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~ 309 (512)
...+|+++... +.....+..+......... ...+++|+||||||||+||.++|+.+ +..+++++..++.....
T Consensus 69 ~~~tFdnf~~~~~~~~~a~~~a~~~a~~~~~---~~~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~i~~~~l~~~l~ 145 (248)
T PRK12377 69 RKCSFANYQVQNDGQRYALSQAKSIADELMT---GCTNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIVVTVPDVMSRLH 145 (248)
T ss_pred ccCCcCCcccCChhHHHHHHHHHHHHHHHHh---cCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEHHHHHHHHH
Confidence 34457888653 3333333332222222222 12479999999999999999999887 56677776655432111
Q ss_pred hHHH---HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-----CC
Q 010366 310 QAVT---KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-----GD 381 (512)
Q Consensus 310 ~~~~---~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-----~~ 381 (512)
.... ....++. ......+|+|||++... .+......|..+++.-. .....+|.|||.. ..
T Consensus 146 ~~~~~~~~~~~~l~---~l~~~dLLiIDDlg~~~-------~s~~~~~~l~~ii~~R~--~~~~ptiitSNl~~~~l~~~ 213 (248)
T PRK12377 146 ESYDNGQSGEKFLQ---ELCKVDLLVLDEIGIQR-------ETKNEQVVLNQIIDRRT--ASMRSVGMLTNLNHEAMSTL 213 (248)
T ss_pred HHHhccchHHHHHH---HhcCCCEEEEcCCCCCC-------CCHHHHHHHHHHHHHHH--hcCCCEEEEcCCCHHHHHHH
Confidence 1100 0112222 22346799999997632 13344556666665542 2234467789974 24
Q ss_pred CCHHHHcccc----ceeecCCCC
Q 010366 382 LDSAVADRID----EVLEFPLPG 400 (512)
Q Consensus 382 l~~al~~R~~----~~i~~~~p~ 400 (512)
+...+++|+- ..|.|.-+|
T Consensus 214 ~~~ri~dRl~~~~~~~v~~~g~s 236 (248)
T PRK12377 214 LGERVMDRMTMNGGRWVNFNWES 236 (248)
T ss_pred hhHHHHHHHhhCCCeEEEeCCcC
Confidence 5667777763 235665554
No 221
>PRK13765 ATP-dependent protease Lon; Provisional
Probab=99.12 E-value=1.8e-09 Score=118.05 Aligned_cols=138 Identities=17% Similarity=0.194 Sum_probs=88.2
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC------------------CCCCCEEEEEeeCCC--CCCCHHHH
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------------------DQSKDIVLALATNRP--GDLDSAVA 387 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~~~viiI~ttN~~--~~l~~al~ 387 (512)
+++|||||++.| +...+..|..+|+.-. ..+.++.+|+++|.. ..++|+|.
T Consensus 227 GGtL~LDei~~L---------~~~~q~~Llr~L~~~~i~i~g~~e~~~~~~~~~~~ip~dvrvI~a~~~~ll~~~dpdL~ 297 (637)
T PRK13765 227 KGVLFIDEINTL---------DLESQQSLLTAMQEKKFPITGQSERSSGAMVRTEPVPCDFIMVAAGNLDALENMHPALR 297 (637)
T ss_pred CcEEEEeChHhC---------CHHHHHHHHHHHHhCCEEecccccccccccCCCcceeeeeEEEEecCcCHHHhhhHHHH
Confidence 468899999987 3455556666664211 012367889998874 56799999
Q ss_pred cccc---ceeecCC---CCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC---C-
Q 010366 388 DRID---EVLEFPL---PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE---G- 457 (512)
Q Consensus 388 ~R~~---~~i~~~~---p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~---g- 457 (512)
.||. ..+.|+. -+.+.+..+++.........+ ....++++.+..|...+. |
T Consensus 298 ~rfk~~~v~v~f~~~~~d~~e~~~~~~~~iaqe~~~~G-------------------~l~~f~~eAVa~LI~~~~R~ag~ 358 (637)
T PRK13765 298 SRIKGYGYEVYMRDTMEDTPENRRKLVRFVAQEVKRDG-------------------KIPHFDRDAVEEIIREAKRRAGR 358 (637)
T ss_pred HHhccCeEEEEcccccCCCHHHHHHHHHHHHHHhhhcc-------------------CCCCCCHHHHHHHHHHHHHHhCC
Confidence 9985 4556543 234455555543333321110 012378887777776532 1
Q ss_pred -----CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 458 -----FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 458 -----~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
...++|..+++.+...+...+...++.+|+.+|+..
T Consensus 359 r~~lsl~~~~l~~l~r~a~~~a~~~~~~~i~~~~v~~a~~~ 399 (637)
T PRK13765 359 KGHLTLKLRDLGGLVRVAGDIARSEGAELTTAEHVLEAKKI 399 (637)
T ss_pred ccccccCHHHHHHHHHHHHHHHHhhccceecHHHHHHHHHh
Confidence 346899999988777777777788999999988854
No 222
>COG1239 ChlI Mg-chelatase subunit ChlI [Coenzyme metabolism]
Probab=99.11 E-value=4.3e-09 Score=107.07 Aligned_cols=248 Identities=16% Similarity=0.166 Sum_probs=145.6
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCC----CC-------
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD----VA------- 305 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~----~~------- 305 (512)
.|.-++|++..+..+.- ..-+....++||.|+.|||||+++|+||.-|.---+...|.. ..
T Consensus 15 pf~aivGqd~lk~aL~l--------~av~P~iggvLI~G~kGtaKSt~~Rala~LLp~~~~V~gc~f~cdP~~P~~~c~~ 86 (423)
T COG1239 15 PFTAIVGQDPLKLALGL--------NAVDPQIGGALIAGEKGTAKSTLARALADLLPEIEVVIGCPFNCDPDDPEEMCDE 86 (423)
T ss_pred chhhhcCchHHHHHHhh--------hhcccccceeEEecCCCccHHHHHHHHHHhCCccceecCCCCCCCCCChhhhhHH
Confidence 38899999999988831 112233468999999999999999999998742111111100 00
Q ss_pred ----------------------CCchhHHHHH------HHHHHH-HHh-------cCCCcEEEEccchhhhhhcccCCCC
Q 010366 306 ----------------------PLGPQAVTKI------HQLFDW-AKK-------SKRGLLLFIDEADAFLCERNKTYMS 349 (512)
Q Consensus 306 ----------------------~~~~~~~~~l------~~lf~~-a~~-------~~~~~vl~lDEid~l~~~~~~~~~~ 349 (512)
...+.+...+ ....+. ... ....+||++||+..| .
T Consensus 87 c~~k~~e~~~~~~~~r~v~~v~lPl~ateDrvvGslDi~ka~~~g~~af~PGlLa~AnRGIlYvDEvnlL---------~ 157 (423)
T COG1239 87 CRAKGDELEWLPREKRKVPFVALPLGATEDRLVGSLDIEKALEEGPKAFQPGLLARANRGILYVDEVNLL---------D 157 (423)
T ss_pred HHhhccccccccccceecceecCCCccchhhhccccCHHHHHhcCccccCCcchhhccCCEEEEeccccc---------c
Confidence 0011111111 111110 000 112469999999987 4
Q ss_pred HHHHHHHHHHHHHc----C------CCCCCEEEEEeeCCC-CCCCHHHHccccceeecCCC-CHHHHHHHHHHHHHHHhh
Q 010366 350 EAQRSALNALLFRT----G------DQSKDIVLALATNRP-GDLDSAVADRIDEVLEFPLP-GQEERFKLLKLYLDKYIA 417 (512)
Q Consensus 350 ~~~~~~l~~ll~~~----~------~~~~~viiI~ttN~~-~~l~~al~~R~~~~i~~~~p-~~~er~~Il~~~l~~~~~ 417 (512)
+....+|...+..- . ..+.++++|+|+|.- ..|-|.|++||...+....| +.++|..|+++.+.-.
T Consensus 158 d~lvd~LLd~aaeG~n~vereGisi~hpa~fvligTmNPEeGeLrpqLlDRfg~~v~~~~~~~~~~rv~Ii~r~~~f~-- 235 (423)
T COG1239 158 DHLVDALLDVAAEGVNDVEREGISIRHPARFLLIGTMNPEEGELRPQLLDRFGLEVDTHYPLDLEERVEIIRRRLAFE-- 235 (423)
T ss_pred HHHHHHHHHHHHhCCceeeeCceeeccCccEEEEeecCccccccchhhHhhhcceeeccCCCCHHHHHHHHHHHHHhh--
Confidence 45555555555431 1 245679999999985 57999999999999988666 7788999998887541
Q ss_pred hhCCCCCcchhhhhhhhhh-----------hhhhcCCCHHHHHHHHHHcC--CCc-HHHHHHHHHHHHHHHhCCCCCccC
Q 010366 418 QAGSRKPGLVHRLFKSEQQ-----------KIEIKGLTDDILMEAAAKTE--GFS-GREIAKLMASVQAAVYGSENCVLD 483 (512)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~l~~la~~t~--g~s-~~dI~~lv~~~~aa~~~~~~~~it 483 (512)
..|+.+...+..... .+.--.+++.....++..+. +.. .+.-..++..+.+.+.-.+...++
T Consensus 236 ----~~Pe~f~~~~~~~~~~lR~~ii~ar~~l~~V~l~~~~~~~ia~~~~~~~v~g~radi~~~r~a~a~aa~~Gr~~v~ 311 (423)
T COG1239 236 ----AVPEAFLEKYADAQRALRARIIAARSLLSEVELDDDAETKIAELCARLAVDGHRADIVVVRAAKALAALRGRTEVE 311 (423)
T ss_pred ----cCcHHHHHHHHHHHHHHHHHHHHHHhccccccCcHHHHHHHHHHHHHhccCCCchhhHHHHHHHHHHHhcCceeee
Confidence 123333333322211 11112355666666665532 111 122223334444444444557888
Q ss_pred HHHHHHHHHHHHHHHHHHHHHhhh
Q 010366 484 PSLFREVVDYKVAEHQQRRKLAAA 507 (512)
Q Consensus 484 ~e~~~~al~~~~~~~~~~~~~~~~ 507 (512)
.++++++..-......++..+...
T Consensus 312 ~~Di~~a~~l~l~hR~~~~~~~~~ 335 (423)
T COG1239 312 EEDIREAAELALLHRRRRKPFIRT 335 (423)
T ss_pred hhhHHHHHhhhhhhhhccccccCc
Confidence 899999998887766665554433
No 223
>KOG0741 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=99.09 E-value=2.3e-09 Score=110.53 Aligned_cols=144 Identities=23% Similarity=0.334 Sum_probs=98.4
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeC-CCCCCC-chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhc
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG-GDVAPL-GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~-~~~~~~-~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~ 343 (512)
.|..++||+||||+|||.||-.+|...+.||+.+-. .++..+ ...-...+..+|+.|.++. -+||++|+++.|+.-.
T Consensus 536 s~lvSvLl~Gp~~sGKTaLAA~iA~~S~FPFvKiiSpe~miG~sEsaKc~~i~k~F~DAYkS~-lsiivvDdiErLiD~v 614 (744)
T KOG0741|consen 536 SPLVSVLLEGPPGSGKTALAAKIALSSDFPFVKIISPEDMIGLSESAKCAHIKKIFEDAYKSP-LSIIVVDDIERLLDYV 614 (744)
T ss_pred CcceEEEEecCCCCChHHHHHHHHhhcCCCeEEEeChHHccCccHHHHHHHHHHHHHHhhcCc-ceEEEEcchhhhhccc
Confidence 455689999999999999999999999999997654 334432 2344567899999998765 7899999999986422
Q ss_pred cc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCC-HHHHccccceeecCCCCH-HHHHHHHHH
Q 010366 344 NK-TYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLD-SAVADRIDEVLEFPLPGQ-EERFKLLKL 410 (512)
Q Consensus 344 ~~-~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~-~al~~R~~~~i~~~~p~~-~er~~Il~~ 410 (512)
.- +..+....+.|..+|...-....+.+|++||....-+. -.+++.|+..+.+|..+. ++...++..
T Consensus 615 pIGPRfSN~vlQaL~VllK~~ppkg~kLli~~TTS~~~vL~~m~i~~~F~~~i~Vpnl~~~~~~~~vl~~ 684 (744)
T KOG0741|consen 615 PIGPRFSNLVLQALLVLLKKQPPKGRKLLIFGTTSRREVLQEMGILDCFSSTIHVPNLTTGEQLLEVLEE 684 (744)
T ss_pred ccCchhhHHHHHHHHHHhccCCCCCceEEEEecccHHHHHHHcCHHHhhhheeecCccCchHHHHHHHHH
Confidence 21 11222333334444433322333567777776655443 356678999999998866 666666654
No 224
>PRK10365 transcriptional regulatory protein ZraR; Provisional
Probab=99.08 E-value=2.5e-09 Score=113.69 Aligned_cols=304 Identities=15% Similarity=0.116 Sum_probs=167.5
Q ss_pred HhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhCC
Q 010366 119 LAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILGQ 198 (512)
Q Consensus 119 ~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~ 198 (512)
...|+.+.++.++.. .+++.+.......+.....+++........+......+.+++.+|.....+...+...+..
T Consensus 48 ~~~DlvilD~~m~~~----~G~~~~~~ir~~~~~~~vi~lt~~~~~~~~~~a~~~ga~~~l~Kp~~~~~L~~~l~~~l~~ 123 (441)
T PRK10365 48 QVFDLVLCDVRMAEM----DGIATLKEIKALNPAIPVLIMTAYSSVETAVEALKTGALDYLIKPLDFDNLQATLEKALAH 123 (441)
T ss_pred CCCCEEEEeCCCCCC----CHHHHHHHHHhhCCCCeEEEEECCCCHHHHHHHHHhhhHHHhcCCCCHHHHHHHHHHHHHH
Confidence 345666665554432 2333333332222222223344433344455556677788888888777777777665543
Q ss_pred CCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCC
Q 010366 199 PSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPG 278 (512)
Q Consensus 199 ~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppG 278 (512)
...... . .+ .... ....++|.......+..-+.... .. ...++++|++|
T Consensus 124 ~~~~~~-~---~~--------------------~~~~-~~~~lig~s~~~~~~~~~i~~~~---~~---~~~vli~ge~g 172 (441)
T PRK10365 124 THSIDA-E---TP--------------------AVTA-SQFGMVGKSPAMQHLLSEIALVA---PS---EATVLIHGDSG 172 (441)
T ss_pred HHHHHH-h---hh--------------------hhhc-cccceEecCHHHHHHHHHHhhcc---CC---CCeEEEEecCC
Confidence 211000 0 00 0000 11346776665555533222221 11 23599999999
Q ss_pred CchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHHHHHH--------------HhcCCCcEEEEccchhhhh
Q 010366 279 TGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWA--------------KKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 279 tGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a--------------~~~~~~~vl~lDEid~l~~ 341 (512)
|||+++|+++.... +.||+.++|..+... .... .+|... .....+++||||||+.|
T Consensus 173 ~gk~~~a~~ih~~s~~~~~~~i~~~c~~~~~~--~~~~---~lfg~~~~~~~~~~~~~~g~~~~a~~gtl~ldei~~l-- 245 (441)
T PRK10365 173 TGKELVARAIHASSARSEKPLVTLNCAALNES--LLES---ELFGHEKGAFTGADKRREGRFVEADGGTLFLDEIGDI-- 245 (441)
T ss_pred CCHHHHHHHHHHcCCCCCCCeeeeeCCCCCHH--HHHH---HhcCCCCCCcCCCCcCCCCceeECCCCEEEEeccccC--
Confidence 99999999997664 478999999876421 0111 111100 01123689999999997
Q ss_pred hcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHHHHH
Q 010366 342 ERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
+...+..+..++..-. ....++.+|+||+.. ..+.+.+..|+ ..+.+..|+..+|..
T Consensus 246 -------~~~~q~~l~~~l~~~~~~~~~~~~~~~~~~rii~~t~~~~~~~~~~~~~~~~l~~~l-~~~~i~~ppLreR~~ 317 (441)
T PRK10365 246 -------SPMMQVRLLRAIQEREVQRVGSNQTISVDVRLIAATHRDLAAEVNAGRFRQDLYYRL-NVVAIEVPSLRQRRE 317 (441)
T ss_pred -------CHHHHHHHHHHHccCcEEeCCCCceeeeceEEEEeCCCCHHHHHHcCCchHHHHHHh-ccceecCCChhhcch
Confidence 4455555555554321 012357788887653 35667777777 566777777776665
Q ss_pred HHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHH
Q 010366 407 LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSL 486 (512)
Q Consensus 407 Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~ 486 (512)
-+...+..+..... . ..+.....++++++..|..+.+..+.+++.+++..+... .....|+.++
T Consensus 318 Di~~l~~~~l~~~~------------~-~~~~~~~~~~~~a~~~L~~~~wpgN~reL~~~~~~~~~~---~~~~~i~~~~ 381 (441)
T PRK10365 318 DIPLLAGHFLQRFA------------E-RNRKAVKGFTPQAMDLLIHYDWPGNIRELENAVERAVVL---LTGEYISERE 381 (441)
T ss_pred hHHHHHHHHHHHHH------------H-HhCCCCCCcCHHHHHHHHhCCCCCHHHHHHHHHHHHHHh---CCCCccchHh
Confidence 44444333321100 0 000111238899999999888766778888877543332 2334566666
Q ss_pred HH
Q 010366 487 FR 488 (512)
Q Consensus 487 ~~ 488 (512)
+.
T Consensus 382 l~ 383 (441)
T PRK10365 382 LP 383 (441)
T ss_pred Cc
Confidence 54
No 225
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=99.07 E-value=1.4e-09 Score=110.33 Aligned_cols=132 Identities=20% Similarity=0.249 Sum_probs=91.7
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHhCC-------------------------CeEEEeCCCC-CCCc----hhHHHHH
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKSGL-------------------------DYALMTGGDV-APLG----PQAVTKI 315 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l~~-------------------------~~~~v~~~~~-~~~~----~~~~~~l 315 (512)
..+.++||+||+|+|||++|+.+|..+.+ +|++++...- ...+ .-..+.+
T Consensus 19 r~~hA~Lf~G~~G~GK~~la~~~a~~llC~~~~~~~~~Cg~C~~C~~~~~~~HpD~~~~~p~~~~~~~g~~~~~I~id~i 98 (325)
T PRK08699 19 RRPNAWLFAGKKGIGKTAFARFAAQALLCETPAPGHKPCGECMSCHLFGQGSHPDFYEITPLSDEPENGRKLLQIKIDAV 98 (325)
T ss_pred CcceEEEeECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCcCHHHHHHhcCCCCCEEEEecccccccccccCCCcCHHHH
Confidence 44457999999999999999999998642 1333332110 0001 0135566
Q ss_pred HHHHHHHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccc
Q 010366 316 HQLFDWAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDE 392 (512)
Q Consensus 316 ~~lf~~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~ 392 (512)
+.+.+.+... .+.-|+++|+++.+ +.... +.++..+++...++.||++|+.++.+.+.+.+|+ .
T Consensus 99 R~l~~~~~~~p~~~~~kV~iiEp~~~L---------d~~a~---naLLk~LEep~~~~~~Ilvth~~~~ll~ti~SRc-~ 165 (325)
T PRK08699 99 REIIDNVYLTSVRGGLRVILIHPAESM---------NLQAA---NSLLKVLEEPPPQVVFLLVSHAADKVLPTIKSRC-R 165 (325)
T ss_pred HHHHHHHhhCcccCCceEEEEechhhC---------CHHHH---HHHHHHHHhCcCCCEEEEEeCChHhChHHHHHHh-h
Confidence 7766666532 23469999999996 33334 4455555545566788889999999999999999 9
Q ss_pred eeecCCCCHHHHHHHHHH
Q 010366 393 VLEFPLPGQEERFKLLKL 410 (512)
Q Consensus 393 ~i~~~~p~~~er~~Il~~ 410 (512)
.+.|++|+.++....+..
T Consensus 166 ~~~~~~~~~~~~~~~L~~ 183 (325)
T PRK08699 166 KMVLPAPSHEEALAYLRE 183 (325)
T ss_pred hhcCCCCCHHHHHHHHHh
Confidence 999999999998877754
No 226
>PF07726 AAA_3: ATPase family associated with various cellular activities (AAA); InterPro: IPR011703 This entry includes some of the AAA proteins not detected by the IPR003959 from INTERPRO model. AAA ATPases form a large, functionally diverse protein family belonging to the AAA+ superfamily of ring-shaped P-loop NTPases, which exert their activity through the energy-dependent unfolding of macromolecules. AAA ATPases contain a P-loop NTPase domain, which is the most abundant class of NTP-binding protein fold, and is found throughout all kingdoms of life []. P-loop NTPase domains act to hydrolyse the beta-gamma phosphate bond of bound nucleoside triphosphate. There are two classes of P-loop domains: the KG (kinase-GTPase) division, and the ASCE division, the latter including the AAA+ group as well as several other ATPases. There are at least six major clades of AAA domains (metalloproteases, meiotic proteins, D1 and D2 domains of ATPases with two AAA domains, proteasome subunits, and BSC1), as well as several minor clades, some of which consist of hypothetical proteins []. The domain organisation of AAA ATPases consists of a non-ATPase N-terminal domain that acts in substrate recognition, followed by one or two AAA domains (D1 and D2), one of which may be degenerate.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 2R44_A.
Probab=99.05 E-value=1.7e-11 Score=105.52 Aligned_cols=112 Identities=25% Similarity=0.298 Sum_probs=57.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCC-CCCCC---chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhccc
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGG-DVAPL---GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNK 345 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~-~~~~~---~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~ 345 (512)
|+||.|+||+|||++|+++|..++..|..|.+. ++.+. |......-...|.....---..|+++||++..
T Consensus 1 HvLleg~PG~GKT~la~~lA~~~~~~f~RIq~tpdllPsDi~G~~v~~~~~~~f~~~~GPif~~ill~DEiNra------ 74 (131)
T PF07726_consen 1 HVLLEGVPGVGKTTLAKALARSLGLSFKRIQFTPDLLPSDILGFPVYDQETGEFEFRPGPIFTNILLADEINRA------ 74 (131)
T ss_dssp -EEEES---HHHHHHHHHHHHHTT--EEEEE--TT--HHHHHEEEEEETTTTEEEEEE-TT-SSEEEEETGGGS------
T ss_pred CEeeECCCccHHHHHHHHHHHHcCCceeEEEecCCCCcccceeeeeeccCCCeeEeecChhhhceeeecccccC------
Confidence 689999999999999999999999999988764 33210 00000000000000000000249999999985
Q ss_pred CCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCCC-----CCCHHHHccc
Q 010366 346 TYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRPG-----DLDSAVADRI 390 (512)
Q Consensus 346 ~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~~-----~l~~al~~R~ 390 (512)
+...+..+...+.+-. .-+.++.||+|.|..+ .++.++++||
T Consensus 75 ---ppktQsAlLeam~Er~Vt~~g~~~~lp~pf~ViATqNp~e~~Gty~Lpea~~DRF 129 (131)
T PF07726_consen 75 ---PPKTQSALLEAMEERQVTIDGQTYPLPDPFFVIATQNPVEQEGTYPLPEAQLDRF 129 (131)
T ss_dssp ----HHHHHHHHHHHHHSEEEETTEEEE--SS-EEEEEE-TT--S------HHHHTTS
T ss_pred ---CHHHHHHHHHHHHcCeEEeCCEEEECCCcEEEEEecCccccCceecCCHHHhccc
Confidence 4455555555554421 2456789999999865 6788999998
No 227
>PRK07952 DNA replication protein DnaC; Validated
Probab=99.03 E-value=1.1e-09 Score=106.46 Aligned_cols=152 Identities=20% Similarity=0.220 Sum_probs=89.4
Q ss_pred CCCCCCccccCh-HHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCch
Q 010366 234 NGNGFGDVILHP-SLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP 309 (512)
Q Consensus 234 ~~~~~~~vvg~~-~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~ 309 (512)
...+|+++...+ .....+..+......... ...+++|+||||||||+++.++|..+ +.++++++.+++.....
T Consensus 67 ~~~tFdnf~~~~~~q~~al~~a~~~~~~~~~---~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~it~~~l~~~l~ 143 (244)
T PRK07952 67 QNCSFENYRVECEGQMNALSKARQYVEEFDG---NIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLIITVADIMSAMK 143 (244)
T ss_pred cCCccccccCCCchHHHHHHHHHHHHHhhcc---CCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEHHHHHHHHH
Confidence 345688876443 333344444333332211 12479999999999999999999987 66777777655432111
Q ss_pred hHH----HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-----C
Q 010366 310 QAV----TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-----G 380 (512)
Q Consensus 310 ~~~----~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-----~ 380 (512)
... .....++... ....+|+|||++... .+......+..++..- ...+..+|.|||.. .
T Consensus 144 ~~~~~~~~~~~~~l~~l---~~~dlLvIDDig~~~-------~s~~~~~~l~~Ii~~R--y~~~~~tiitSNl~~~~l~~ 211 (244)
T PRK07952 144 DTFSNSETSEEQLLNDL---SNVDLLVIDEIGVQT-------ESRYEKVIINQIVDRR--SSSKRPTGMLTNSNMEEMTK 211 (244)
T ss_pred HHHhhccccHHHHHHHh---ccCCEEEEeCCCCCC-------CCHHHHHHHHHHHHHH--HhCCCCEEEeCCCCHHHHHH
Confidence 110 0111233322 346799999998842 1334455666666543 23344678889874 2
Q ss_pred CCCHHHHcccc----ceeecCCCC
Q 010366 381 DLDSAVADRID----EVLEFPLPG 400 (512)
Q Consensus 381 ~l~~al~~R~~----~~i~~~~p~ 400 (512)
.++..+.+|+- ..+.|.-++
T Consensus 212 ~~g~ri~sRl~~~~~~~i~f~~~s 235 (244)
T PRK07952 212 LLGERVMDRMRLGNSLWVIFNWDS 235 (244)
T ss_pred HhChHHHHHHHHCCceEEEeeCCc
Confidence 45677777772 356666555
No 228
>smart00763 AAA_PrkA PrkA AAA domain. This is a family of PrkA bacterial and archaeal serine kinases approximately 630 residues long. This is the N-terminal AAA domain.
Probab=99.02 E-value=5.8e-09 Score=105.69 Aligned_cols=62 Identities=18% Similarity=0.138 Sum_probs=47.6
Q ss_pred CC-ccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-------CeEEEeC
Q 010366 238 FG-DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-------DYALMTG 301 (512)
Q Consensus 238 ~~-~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-------~~~~v~~ 301 (512)
|+ +++|+++++..+...+...... .+.+.+.++|+||||||||++|++|++.++. +++.+..
T Consensus 49 F~~~~~G~~~~i~~lv~~l~~~a~g--~~~~r~il~L~GPPGsGKStla~~La~~l~~ys~t~eG~~Y~~~~ 118 (361)
T smart00763 49 FDHDFFGMEEAIERFVNYFKSAAQG--LEERKQILYLLGPVGGGKSSLVECLKRGLEEYSKTPEGRRYTFKW 118 (361)
T ss_pred cchhccCcHHHHHHHHHHHHHHHhc--CCCCCcEEEEECCCCCCHHHHHHHHHHHHhhhcccccCceEEEEe
Confidence 66 9999999988887655544421 1223356899999999999999999999875 7777765
No 229
>KOG0478 consensus DNA replication licensing factor, MCM4 component [Replication, recombination and repair]
Probab=99.00 E-value=1.5e-08 Score=107.54 Aligned_cols=217 Identities=18% Similarity=0.173 Sum_probs=130.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCc--------hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhh
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG--------PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~--------~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~ 341 (512)
++||+|.||||||.+.+.+++-+....+ .++-.-+..| .++.+-+ +-.-|.....++|-+|||||++
T Consensus 464 NILL~GDPGtsKSqlLqyv~~l~pRg~y-TSGkGsSavGLTayVtrd~dtkqlV--LesGALVLSD~GiCCIDEFDKM-- 538 (804)
T KOG0478|consen 464 NILLVGDPGTSKSQLLQYCHRLLPRGVY-TSGKGSSAVGLTAYVTKDPDTRQLV--LESGALVLSDNGICCIDEFDKM-- 538 (804)
T ss_pred eEEEecCCCcCHHHHHHHHHHhCCccee-ecCCccchhcceeeEEecCccceee--eecCcEEEcCCceEEchhhhhh--
Confidence 7999999999999999999887643322 1210000000 0000000 0000111233678999999997
Q ss_pred hcccCCCCHHHHHHHHHHHHHc----------CCCCCCEEEEEeeCCCC-------------CCCHHHHcccccee-ecC
Q 010366 342 ERNKTYMSEAQRSALNALLFRT----------GDQSKDIVLALATNRPG-------------DLDSAVADRIDEVL-EFP 397 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~----------~~~~~~viiI~ttN~~~-------------~l~~al~~R~~~~i-~~~ 397 (512)
+...+.+|...+++- ...+..+-|++++|... .++|.|+||||.++ .++
T Consensus 539 -------~dStrSvLhEvMEQQTvSIAKAGII~sLNAR~SVLAaANP~~skynp~k~i~eNI~LpptLLSRFDLIylllD 611 (804)
T KOG0478|consen 539 -------SDSTRSVLHEVMEQQTLSIAKAGIIASLNARCSVLAAANPIRSKYNPNKSIIENINLPPTLLSRFDLIFLLLD 611 (804)
T ss_pred -------hHHHHHHHHHHHHHhhhhHhhcceeeeccccceeeeeeccccccCCCCCchhhccCCChhhhhhhcEEEEEec
Confidence 567777877777642 13455677888888532 57899999998776 668
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCcchh----hhhhhhhhhhhhcCCCHHHHHHHHHHc---------CC---CcHH
Q 010366 398 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVH----RLFKSEQQKIEIKGLTDDILMEAAAKT---------EG---FSGR 461 (512)
Q Consensus 398 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~l~~la~~t---------~g---~s~~ 461 (512)
.|+...=+.|..+...-+...........+. +.+.....+..++.+++++...+.... .| -+++
T Consensus 612 ~~DE~~Dr~La~HivsLy~e~~~~~~~~~~d~~~lr~yi~yArk~i~p~l~~ea~~~l~~ayvd~rk~~~~~~~itat~r 691 (804)
T KOG0478|consen 612 KPDERSDRRLADHIVALYPETGEKQGSEAIDMNLLRDYIRYARKNIHPALSPEASQALIQAYVDMRKIGEGAGQITATPR 691 (804)
T ss_pred CcchhHHHHHHHHHHHhcccccccchhHHHhHHHHHHHHHHHhccCCccccHHHHHHHHHHhhhhhhhcccccccchhHH
Confidence 8877644455555544443322111111121 112222233334556777666654442 12 3568
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
+++.|++...+.+.-.....+...++++|+..+....
T Consensus 692 QlesLiRlsEahak~r~s~~ve~~dV~eA~~l~R~aL 728 (804)
T KOG0478|consen 692 QLESLIRLSEAHAKMRLSNRVEEIDVEEAVRLLREAL 728 (804)
T ss_pred HHHHHHHHHHHHHHhhcccccchhhHHHHHHHHHHHh
Confidence 9999998888888777778999999999998776543
No 230
>KOG2227 consensus Pre-initiation complex, subunit CDC6, AAA+ superfamily ATPase [Replication, recombination and repair; Cell cycle control, cell division, chromosome partitioning]
Probab=98.98 E-value=1e-08 Score=104.80 Aligned_cols=227 Identities=17% Similarity=0.161 Sum_probs=144.7
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC----C-CeEEEeCCCCCCCc----
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----L-DYALMTGGDVAPLG---- 308 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~----~-~~~~v~~~~~~~~~---- 308 (512)
-..++|.+.-+..+..+...-.... ..+++++.|-||||||.+...+-..+. . ..+++||..+....
T Consensus 149 p~~l~gRe~e~~~v~~F~~~hle~~----t~gSlYVsG~PGtgkt~~l~rvl~~~~~~~~~~~~v~inc~sl~~~~aiF~ 224 (529)
T KOG2227|consen 149 PGTLKGRELEMDIVREFFSLHLELN----TSGSLYVSGQPGTGKTALLSRVLDSLSKSSKSPVTVYINCTSLTEASAIFK 224 (529)
T ss_pred CCCccchHHHHHHHHHHHHhhhhcc----cCcceEeeCCCCcchHHHHHHHHHhhhhhcccceeEEEeeccccchHHHHH
Confidence 3678888888888877665433322 235899999999999999887655442 2 35788887653211
Q ss_pred ------------hhHHHHHHHHHHH-HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEe
Q 010366 309 ------------PQAVTKIHQLFDW-AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALA 375 (512)
Q Consensus 309 ------------~~~~~~l~~lf~~-a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~t 375 (512)
..........|.. ......+-++++||+|.|+... +.++..++..-.-....+++|+.
T Consensus 225 kI~~~~~q~~~s~~~~~~~~~~~~~h~~q~k~~~llVlDEmD~L~tr~---------~~vLy~lFewp~lp~sr~iLiGi 295 (529)
T KOG2227|consen 225 KIFSSLLQDLVSPGTGMQHLEKFEKHTKQSKFMLLLVLDEMDHLITRS---------QTVLYTLFEWPKLPNSRIILIGI 295 (529)
T ss_pred HHHHHHHHHhcCCchhHHHHHHHHHHHhcccceEEEEechhhHHhhcc---------cceeeeehhcccCCcceeeeeee
Confidence 1111112222322 2233346799999999997332 33555665554456778899999
Q ss_pred eCCCCCCCHH---HHccc---cceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHH
Q 010366 376 TNRPGDLDSA---VADRI---DEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILM 449 (512)
Q Consensus 376 tN~~~~l~~a---l~~R~---~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (512)
+|..+.-|.. +..|. +..+.|++|+.+++..|+...+..... ..+-+..+.
T Consensus 296 ANslDlTdR~LprL~~~~~~~P~~l~F~PYTk~qI~~Il~~rl~~~~t-----------------------~~~~~~Aie 352 (529)
T KOG2227|consen 296 ANSLDLTDRFLPRLNLDLTIKPKLLVFPPYTKDQIVEILQQRLSEEST-----------------------SIFLNAAIE 352 (529)
T ss_pred hhhhhHHHHHhhhhhhccCCCCceeeecCCCHHHHHHHHHHHHhcccc-----------------------cccchHHHH
Confidence 9987654433 33332 578899999999999999999876421 114446788
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHH---h----CC------------CCCccCHHHHHHHHHHHHHHHHHH
Q 010366 450 EAAAKTEGFSGREIAKLMASVQAAV---Y----GS------------ENCVLDPSLFREVVDYKVAEHQQR 501 (512)
Q Consensus 450 ~la~~t~g~s~~dI~~lv~~~~aa~---~----~~------------~~~~it~e~~~~al~~~~~~~~~~ 501 (512)
..|.+..|.|| |+++++..++.+. . .. ....|..+++..++..+......+
T Consensus 353 ~~ArKvaa~SG-DlRkaLdv~R~aiEI~E~e~r~~~~~~l~~~~~p~~~~~v~~~~va~viSk~~~s~~~~ 422 (529)
T KOG2227|consen 353 LCARKVAAPSG-DLRKALDVCRRAIEIAEIEKRKILDDPLSPGTSPEKKKKVGVEHVAAVISKVDGSPSAR 422 (529)
T ss_pred HHHHHhccCch-hHHHHHHHHHHHHHHHHHHHhhccccCCCCCCCcccccccchHHHHHHhhhhccChhhh
Confidence 89999989887 7777664444211 1 11 013455778888887665444333
No 231
>PF03215 Rad17: Rad17 cell cycle checkpoint protein
Probab=98.98 E-value=2.3e-08 Score=107.16 Aligned_cols=212 Identities=17% Similarity=0.212 Sum_probs=125.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEe-CCCCCC----
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT-GGDVAP---- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~-~~~~~~---- 306 (512)
++.|.+.+++..+..-.+.|+..+.... ....+.+-+||+||||||||++++.||++++..+..-. ...+..
T Consensus 12 ky~P~~~~eLavhkkKv~eV~~wl~~~~---~~~~~~~iLlLtGP~G~GKtttv~~La~elg~~v~Ew~np~~~~~~~~~ 88 (519)
T PF03215_consen 12 KYAPKTLDELAVHKKKVEEVRSWLEEMF---SGSSPKRILLLTGPSGCGKTTTVKVLAKELGFEVQEWINPVSFRESDNQ 88 (519)
T ss_pred hcCCCCHHHhhccHHHHHHHHHHHHHHh---ccCCCcceEEEECCCCCCHHHHHHHHHHHhCCeeEEecCCCCccccccc
Confidence 5778888999999887777766554322 22233456889999999999999999999997766532 222100
Q ss_pred ---Cc------h---hHHHHHHHH-HHHHHh----------cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 307 ---LG------P---QAVTKIHQL-FDWAKK----------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 307 ---~~------~---~~~~~l~~l-f~~a~~----------~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
+. . .....+... +...+. .....||+|||+-.++.... ...+..|..++..
T Consensus 89 ~~d~~s~~~~~~~f~sq~~~F~~f~l~~s~y~~l~~~g~~~~~~~kvILVEDlPN~~~~~~-----~~f~~~L~~~l~~- 162 (519)
T PF03215_consen 89 EDDFESDFNKFDEFLSQSDKFSEFLLRASKYSSLSMSGSNSSSNKKVILVEDLPNVFHRDT-----SRFREALRQYLRS- 162 (519)
T ss_pred cccccccccccccccchhhhhccccccccccccccccCCCcCCCceEEEeeccccccchhH-----HHHHHHHHHHHHc-
Confidence 00 0 000111111 111110 01346899999986543211 2334444444432
Q ss_pred CCCCC-CEEEEEe-e------CCC--------CCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCc
Q 010366 364 GDQSK-DIVLALA-T------NRP--------GDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPG 425 (512)
Q Consensus 364 ~~~~~-~viiI~t-t------N~~--------~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~ 425 (512)
... +++||.| + |.. ..+++.++. ++ ..|.|.+-...-..+.|...+.........
T Consensus 163 --~~~~PlV~iiSe~~~~~~~~~~~~~~~t~~~L~~~~il~~~~i-~~I~FNpIa~T~mkKaL~rI~~~E~~~~~~---- 235 (519)
T PF03215_consen 163 --SRCLPLVFIISETESLSGDNSYRSNSFTAERLFPKEILNHPGI-TRIKFNPIAPTFMKKALKRILKKEARSSSG---- 235 (519)
T ss_pred --CCCCCEEEEEecccccCCCCcccccchhhhhccCHHHHhCCCc-eEEEecCCCHHHHHHHHHHHHHHHhhhhcC----
Confidence 233 7788777 1 111 146677776 44 778999999988888888777653111000
Q ss_pred chhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 010366 426 LVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 426 ~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~ 475 (512)
... .......++.|+..+.| ||+.++..++..+.
T Consensus 236 -----------~~~-~p~~~~~l~~I~~~s~G----DIRsAIn~LQf~~~ 269 (519)
T PF03215_consen 236 -----------KNK-VPDKQSVLDSIAESSNG----DIRSAINNLQFWCL 269 (519)
T ss_pred -----------Ccc-CCChHHHHHHHHHhcCc----hHHHHHHHHHHHhc
Confidence 000 00123468899877654 99999999998876
No 232
>PRK05818 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=2.9e-08 Score=96.29 Aligned_cols=116 Identities=11% Similarity=0.081 Sum_probs=84.8
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCCC----------------------eEEEeCCCCCCCchhHHHHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGLD----------------------YALMTGGDVAPLGPQAVTKIHQLFDWAKK 324 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~~----------------------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~ 324 (512)
++..+||+||+|+||..+|.++|..+-+. +..+... ..+.+ .+.++.+......
T Consensus 6 ~~HA~Lf~G~~G~G~~~lA~~~A~~llC~~~~~~Cg~C~sC~~i~~~~HPDl~~i~p~-~~~I~---id~ir~l~~~l~~ 81 (261)
T PRK05818 6 KTHPLLLIERKGSFLKPFLYEYLTSIVCTKANGFCKTCESCLKILNGKYNDFYLIFDQ-KNPIK---KEDALSIINKLNR 81 (261)
T ss_pred CCcceeeeCCCCCcHHHHHHHHHHHHcCCCCCCCCCCCHHHHHHhcCCCCCEEEecCC-cccCC---HHHHHHHHHHHcc
Confidence 45679999999999999999999886321 1221111 01122 2334444433322
Q ss_pred ----cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCC
Q 010366 325 ----SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLP 399 (512)
Q Consensus 325 ----~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p 399 (512)
...+-|++||++|.+ .....|.||..+++++.++++|++|+.++.+.|.++||+ ..+.|+.+
T Consensus 82 ~s~e~~~~KV~II~~ae~m------------~~~AaNaLLK~LEEPp~~t~fiLit~~~~~lLpTI~SRC-q~~~~~~~ 147 (261)
T PRK05818 82 PSVESNGKKIYIIYGIEKL------------NKQSANSLLKLIEEPPKNTYGIFTTRNENNILNTILSRC-VQYVVLSK 147 (261)
T ss_pred CchhcCCCEEEEeccHhhh------------CHHHHHHHHHhhcCCCCCeEEEEEECChHhCchHhhhhe-eeeecCCh
Confidence 123579999999996 456779999999999999999999999999999999999 77888777
No 233
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=98.97 E-value=1.3e-08 Score=100.83 Aligned_cols=121 Identities=16% Similarity=0.139 Sum_probs=87.2
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------eEEEeCCCCCCCchhHHHHHHHHHHHHHhc---
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD----------------YALMTGGDVAPLGPQAVTKIHQLFDWAKKS--- 325 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~----------------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~--- 325 (512)
+.-+..+||+||+|+||+.+|.++|..+-+. +..+....-.. .-..+.++.+...+...
T Consensus 16 ~rl~HAyLf~G~~G~Gk~~lA~~~A~~llC~~~~~~c~~~~~~~HPD~~~i~p~~~~~--~I~idqiR~l~~~~~~~p~e 93 (290)
T PRK05917 16 QKVPSAIILHGQDLSNLSARAYELASLILKETSPEAAYKISQKIHPDIHEFSPQGKGR--LHSIETPRAIKKQIWIHPYE 93 (290)
T ss_pred CCcCeeEeeECCCCCcHHHHHHHHHHHHhCCCCccHHHHHhcCCCCCEEEEecCCCCC--cCcHHHHHHHHHHHhhCccC
Confidence 4444679999999999999999999887431 22221110000 01244455555444322
Q ss_pred CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCC
Q 010366 326 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 326 ~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~ 400 (512)
.++-|++||++|.+ ....-|.||..+++++.++++|+.|+.++.+.|.++||+ ..+.|+++.
T Consensus 94 ~~~kv~ii~~ad~m------------t~~AaNaLLK~LEEPp~~~~fiL~~~~~~~ll~TI~SRc-q~~~~~~~~ 155 (290)
T PRK05917 94 SPYKIYIIHEADRM------------TLDAISAFLKVLEDPPQHGVIILTSAKPQRLPPTIRSRS-LSIHIPMEE 155 (290)
T ss_pred CCceEEEEechhhc------------CHHHHHHHHHHhhcCCCCeEEEEEeCChhhCcHHHHhcc-eEEEccchh
Confidence 33569999999996 345678888889999999999999999999999999999 888888753
No 234
>PF14532 Sigma54_activ_2: Sigma-54 interaction domain; PDB: 3CO5_B 3N70_H.
Probab=98.96 E-value=1.2e-09 Score=97.29 Aligned_cols=126 Identities=24% Similarity=0.404 Sum_probs=80.5
Q ss_pred ccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---CCeEEEeCCCCCCCchhHHHHHHHH
Q 010366 242 ILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPLGPQAVTKIHQL 318 (512)
Q Consensus 242 vg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~~~~~~~~~~~~~~~l~~l 318 (512)
||....++.+..-+...+.. +. +|+|+|+|||||+++|++|....+ .+|+.++|.... ..+
T Consensus 1 vG~S~~~~~l~~~l~~~a~~---~~---pvli~GE~GtGK~~~A~~lh~~~~~~~~~~~~~~~~~~~----------~~~ 64 (138)
T PF14532_consen 1 VGKSPAMRRLRRQLERLAKS---SS---PVLITGEPGTGKSLLARALHRYSGRANGPFIVIDCASLP----------AEL 64 (138)
T ss_dssp --SCHHHHHHHHHHHHHHCS---SS----EEEECCTTSSHHHHHHCCHHTTTTCCS-CCCCCHHCTC----------HHH
T ss_pred CCCCHHHHHHHHHHHHHhCC---CC---cEEEEcCCCCCHHHHHHHHHhhcCccCCCeEEechhhCc----------HHH
Confidence 46666677775555444322 23 499999999999999999988765 356666665533 223
Q ss_pred HHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-------CCCCHHHHcccc
Q 010366 319 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-------GDLDSAVADRID 391 (512)
Q Consensus 319 f~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-------~~l~~al~~R~~ 391 (512)
++.+ .+++|||+|+|.+ +...+..+..++.... ..++.+|+++..+ ..+++.+..|+.
T Consensus 65 l~~a----~~gtL~l~~i~~L---------~~~~Q~~L~~~l~~~~--~~~~RlI~ss~~~l~~l~~~~~~~~~L~~~l~ 129 (138)
T PF14532_consen 65 LEQA----KGGTLYLKNIDRL---------SPEAQRRLLDLLKRQE--RSNVRLIASSSQDLEELVEEGRFSPDLYYRLS 129 (138)
T ss_dssp HHHC----TTSEEEEECGCCS----------HHHHHHHHHHHHHCT--TTTSEEEEEECC-CCCHHHHSTHHHHHHHHCS
T ss_pred HHHc----CCCEEEECChHHC---------CHHHHHHHHHHHHhcC--CCCeEEEEEeCCCHHHHhhccchhHHHHHHhC
Confidence 3333 3789999999997 5566777777776643 4566777777542 246778888884
Q ss_pred -ceeecCC
Q 010366 392 -EVLEFPL 398 (512)
Q Consensus 392 -~~i~~~~ 398 (512)
..|.+|+
T Consensus 130 ~~~i~lPp 137 (138)
T PF14532_consen 130 QLEIHLPP 137 (138)
T ss_dssp TCEEEE--
T ss_pred CCEEeCCC
Confidence 3445554
No 235
>PRK07132 DNA polymerase III subunit delta'; Validated
Probab=98.96 E-value=3.3e-08 Score=98.91 Aligned_cols=130 Identities=18% Similarity=0.118 Sum_probs=95.2
Q ss_pred cCCCCcceEEecCCCCchHHHHHHHHHHhCC-----------C--eEEEeCCCCCCCchhHHHHHHHHHHHHHhcC----
Q 010366 264 HNAPFRNMLFYGPPGTGKTMAARELARKSGL-----------D--YALMTGGDVAPLGPQAVTKIHQLFDWAKKSK---- 326 (512)
Q Consensus 264 ~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-----------~--~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~---- 326 (512)
.+.-...+||+|+.|+||+.+|+.++..+-+ | +..++... ..-....++.+.+.....+
T Consensus 14 ~~~l~haYLf~G~eg~gk~~~a~~~a~~l~c~~~~~~~~~~~p~n~~~~d~~g----~~i~vd~Ir~l~~~~~~~~~~~~ 89 (299)
T PRK07132 14 QNKISHSFLLKSNYNEDIDEKILYFLNKFNNLQITNLNEQELPANIILFDIFD----KDLSKSEFLSAINKLYFSSFVQS 89 (299)
T ss_pred hCCCCeEEEEeCCCCCCHHHHHHHHHHHHcCcCCCCCCCCCCCcceEEeccCC----CcCCHHHHHHHHHHhccCCcccC
Confidence 3334457889999999999999999998722 1 22232100 1112344555555443322
Q ss_pred CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHH
Q 010366 327 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 327 ~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
.+-|++||++|.+ .....|.||..+++++.++++|++|+.+..+-|.+.+|+ .++.|++|+.++...
T Consensus 90 ~~KvvII~~~e~m------------~~~a~NaLLK~LEEPp~~t~~il~~~~~~kll~TI~SRc-~~~~f~~l~~~~l~~ 156 (299)
T PRK07132 90 QKKILIIKNIEKT------------SNSLLNALLKTIEEPPKDTYFLLTTKNINKVLPTIVSRC-QVFNVKEPDQQKILA 156 (299)
T ss_pred CceEEEEeccccc------------CHHHHHHHHHHhhCCCCCeEEEEEeCChHhChHHHHhCe-EEEECCCCCHHHHHH
Confidence 4679999999985 244677888889999999999999989999999999999 999999999998887
Q ss_pred HHHH
Q 010366 407 LLKL 410 (512)
Q Consensus 407 Il~~ 410 (512)
.+..
T Consensus 157 ~l~~ 160 (299)
T PRK07132 157 KLLS 160 (299)
T ss_pred HHHH
Confidence 6654
No 236
>COG1241 MCM2 Predicted ATPase involved in replication control, Cdc46/Mcm family [DNA replication, recombination, and repair]
Probab=98.95 E-value=1.2e-08 Score=110.97 Aligned_cols=220 Identities=18% Similarity=0.175 Sum_probs=130.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE-eCCCCCCCchhHH-HHH-HH--HHHHHHhcCCCcEEEEccchhhhhhcc
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM-TGGDVAPLGPQAV-TKI-HQ--LFDWAKKSKRGLLLFIDEADAFLCERN 344 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v-~~~~~~~~~~~~~-~~l-~~--lf~~a~~~~~~~vl~lDEid~l~~~~~ 344 (512)
|+||.|.||||||.|.+.+++.+...++.- .++.-.+...... ... .+ +-.-|.....++|++|||+|++
T Consensus 321 nILLvGDPgtaKSqlLk~v~~~aPr~vytsgkgss~~GLTAav~rd~~tge~~LeaGALVlAD~Gv~cIDEfdKm----- 395 (682)
T COG1241 321 HILLVGDPGTAKSQLLKYVAKLAPRGVYTSGKGSSAAGLTAAVVRDKVTGEWVLEAGALVLADGGVCCIDEFDKM----- 395 (682)
T ss_pred eEEEcCCCchhHHHHHHHHHhhCCceEEEccccccccCceeEEEEccCCCeEEEeCCEEEEecCCEEEEEeccCC-----
Confidence 799999999999999999998765433321 1111111000000 000 00 0000111233689999999985
Q ss_pred cCCCCHHHHHHHHHHHHHc--C--------CCCCCEEEEEeeCCCC-------------CCCHHHHccccceee-cCCCC
Q 010366 345 KTYMSEAQRSALNALLFRT--G--------DQSKDIVLALATNRPG-------------DLDSAVADRIDEVLE-FPLPG 400 (512)
Q Consensus 345 ~~~~~~~~~~~l~~ll~~~--~--------~~~~~viiI~ttN~~~-------------~l~~al~~R~~~~i~-~~~p~ 400 (512)
+...+..+...+.+- . ..+..+-|++++|... .++++|++|||.++. .+.|+
T Consensus 396 ----~~~dr~aihEaMEQQtIsIaKAGI~atLnARcsvLAAaNP~~Gryd~~~~~~enI~l~~~lLSRFDLifvl~D~~d 471 (682)
T COG1241 396 ----NEEDRVAIHEAMEQQTISIAKAGITATLNARCSVLAAANPKFGRYDPKKTVAENINLPAPLLSRFDLIFVLKDDPD 471 (682)
T ss_pred ----ChHHHHHHHHHHHhcEeeecccceeeecchhhhhhhhhCCCCCcCCCCCCHHHhcCCChhHHhhCCeeEEecCCCC
Confidence 445555555554431 0 1233456777788743 477899999998764 46677
Q ss_pred HHHHHHHHHHHHHHHhhhhCCC-------------CCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc------------
Q 010366 401 QEERFKLLKLYLDKYIAQAGSR-------------KPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT------------ 455 (512)
Q Consensus 401 ~~er~~Il~~~l~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t------------ 455 (512)
.+.=..+..+.+.......... ..+++.++..-...+ ..+.+++++.+.|...+
T Consensus 472 ~~~D~~ia~hil~~h~~~~~~~~~~~~~~~~~~~~~~~~lrkYI~YAR~~-v~P~lt~ea~e~l~~~Yv~~Rk~~~~~~~ 550 (682)
T COG1241 472 EEKDEEIAEHILDKHRGEEPEETISLDGVDEVEERDFELLRKYISYARKN-VTPVLTEEAREELEDYYVEMRKKSALVEE 550 (682)
T ss_pred ccchHHHHHHHHHHHhccccccccccccccccccCcHHHHHHHHHHHhcc-CCcccCHHHHHHHHHHHHHhhhccccccc
Confidence 7655666666665542111000 011122221111111 22568888877776653
Q ss_pred ---CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHH
Q 010366 456 ---EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 456 ---~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~ 499 (512)
..-+.|+++.+++.+.+.+..+-...++.+|+.+|++-......
T Consensus 551 ~~~~piT~RqLEsiiRLaeA~Ak~rLS~~V~~eD~~eAi~lv~~~l~ 597 (682)
T COG1241 551 KRTIPITARQLESIIRLAEAHAKMRLSDVVEEEDVDEAIRLVDFSLK 597 (682)
T ss_pred cCcccccHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHHHH
Confidence 12568999999999999999888899999999999987765443
No 237
>KOG0480 consensus DNA replication licensing factor, MCM6 component [Replication, recombination and repair]
Probab=98.91 E-value=4.9e-08 Score=102.95 Aligned_cols=250 Identities=15% Similarity=0.108 Sum_probs=143.7
Q ss_pred CCccccChHHHHHHH-HHHHHhhchhhcCCCCc---ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCc-----
Q 010366 238 FGDVILHPSLQKRIR-QLSGATANTKAHNAPFR---NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG----- 308 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~-~~~~~~~~~~~~~~p~~---~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~----- 308 (512)
|-.|.|++.++.-|. .+.--.......+.|.+ +++++|.|||||+-+.++.+..+...++. ++..-+..|
T Consensus 344 ~PsIyGhe~VK~GilL~LfGGv~K~a~eg~~lRGDinv~iVGDPgt~KSQfLk~v~~fsPR~vYt-sGkaSSaAGLTaaV 422 (764)
T KOG0480|consen 344 FPSIYGHELVKAGILLSLFGGVHKSAGEGTSLRGDINVCIVGDPGTGKSQFLKAVCAFSPRSVYT-SGKASSAAGLTAAV 422 (764)
T ss_pred CccccchHHHHhhHHHHHhCCccccCCCCccccCCceEEEeCCCCccHHHHHHHHhccCCcceEe-cCcccccccceEEE
Confidence 677888888888773 22211111112233333 79999999999999999999877554332 221110000
Q ss_pred ---hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC---------CCCCCEEEEEee
Q 010366 309 ---PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---------DQSKDIVLALAT 376 (512)
Q Consensus 309 ---~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~---------~~~~~viiI~tt 376 (512)
.++.....+ .-|......+|-+|||||++- ...+...+..+=++.- .-+...-||+++
T Consensus 423 vkD~esgdf~iE--AGALmLADnGICCIDEFDKMd--------~~dqvAihEAMEQQtISIaKAGv~aTLnARtSIlAAA 492 (764)
T KOG0480|consen 423 VKDEESGDFTIE--AGALMLADNGICCIDEFDKMD--------VKDQVAIHEAMEQQTISIAKAGVVATLNARTSILAAA 492 (764)
T ss_pred EecCCCCceeee--cCcEEEccCceEEechhcccC--------hHhHHHHHHHHHhheehheecceEEeecchhhhhhhc
Confidence 000000000 001112336799999999972 1123333333333211 123345677888
Q ss_pred CCCC-------------CCCHHHHcccccee-ecCCCCHHHHHHHHHHHHHHHhhhhCCCCC--cchhhhhhhh--hhhh
Q 010366 377 NRPG-------------DLDSAVADRIDEVL-EFPLPGQEERFKLLKLYLDKYIAQAGSRKP--GLVHRLFKSE--QQKI 438 (512)
Q Consensus 377 N~~~-------------~l~~al~~R~~~~i-~~~~p~~~er~~Il~~~l~~~~~~~~~~~~--~~~~~~~~~~--~~~~ 438 (512)
|... .++++++||||..+ -++.|++..=..|-++.++....-.....+ .+-...+... ..+.
T Consensus 493 NPv~GhYdR~ktl~eNi~msApimSRFDL~FiLlD~~nE~~D~~ia~hIld~h~~i~~~~~~~~~~~~e~vrkYi~yAR~ 572 (764)
T KOG0480|consen 493 NPVGGHYDRKKTLRENINMSAPIMSRFDLFFILLDDCNEVVDYAIARHILDLHRGIDDATERVCVYTLEQVRKYIRYARN 572 (764)
T ss_pred CCcCCccccccchhhhcCCCchhhhhhcEEEEEecCCchHHHHHHHHHHHHHhccccccccccccccHHHHHHHHHHHHh
Confidence 8743 46899999999765 678999888777777777653221111111 0100101100 0011
Q ss_pred hhcCCCHHHHHHHHHH---------------cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 439 EIKGLTDDILMEAAAK---------------TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 439 ~~~~~~~~~l~~la~~---------------t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
..+.++.+.-+.|.+. +.+.+.|+|+.|++...|.+...-...+|++++.+|++-.....
T Consensus 573 ~~P~ls~ea~~~lve~Y~~lR~~~~~~~~~~s~~ITvRqLESlIRLsEA~Ar~~~~devt~~~v~ea~eLlk~Si 647 (764)
T KOG0480|consen 573 FKPKLSKEASEMLVEKYKGLRQRDAQGNNRSSYRITVRQLESLIRLSEARARVECRDEVTKEDVEEAVELLKKSI 647 (764)
T ss_pred cCccccHHHHHHHHHHHHHHHHhhccccCcccccccHHHHHHHHHHHHHHHhhhhhhhccHHHHHHHHHHHHhhh
Confidence 1134555555554444 23667899999999999988887778999999999998776554
No 238
>PF12775 AAA_7: P-loop containing dynein motor region D3; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=98.90 E-value=1.8e-08 Score=99.80 Aligned_cols=216 Identities=18% Similarity=0.268 Sum_probs=109.9
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC-e--EEEeCCCCCCCchhHHH
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD-Y--ALMTGGDVAPLGPQAVT 313 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~-~--~~v~~~~~~~~~~~~~~ 313 (512)
.|.+++.+-.--.+...++.... ..+. ++||+||+|||||++++.+-..+... + ..++++.. .+..
T Consensus 8 ~~~~~~VpT~dt~r~~~ll~~l~---~~~~---pvLl~G~~GtGKT~li~~~l~~l~~~~~~~~~~~~s~~-----Tts~ 76 (272)
T PF12775_consen 8 PFNEILVPTVDTVRYSYLLDLLL---SNGR---PVLLVGPSGTGKTSLIQNFLSSLDSDKYLVITINFSAQ-----TTSN 76 (272)
T ss_dssp -----T---HHHHHHHHHHHHHH---HCTE---EEEEESSTTSSHHHHHHHHHHCSTTCCEEEEEEES-TT-----HHHH
T ss_pred ccceEEeCcHHHHHHHHHHHHHH---HcCC---cEEEECCCCCchhHHHHhhhccCCccccceeEeeccCC-----CCHH
Confidence 35565554333333333443332 2233 59999999999999998877665433 2 23333321 2223
Q ss_pred HHHHHHHHHHhc----------CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCC---------CCCEEEEE
Q 010366 314 KIHQLFDWAKKS----------KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ---------SKDIVLAL 374 (512)
Q Consensus 314 ~l~~lf~~a~~~----------~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~---------~~~viiI~ 374 (512)
.+..+.+..... .+..|+||||++.-....- + .....+.|.+++..-+.+ -.++.+|+
T Consensus 77 ~~q~~ie~~l~k~~~~~~gP~~~k~lv~fiDDlN~p~~d~y--g-tq~~iElLRQ~i~~~g~yd~~~~~~~~i~~i~~va 153 (272)
T PF12775_consen 77 QLQKIIESKLEKRRGRVYGPPGGKKLVLFIDDLNMPQPDKY--G-TQPPIELLRQLIDYGGFYDRKKLEWKSIEDIQFVA 153 (272)
T ss_dssp HHHHCCCTTECECTTEEEEEESSSEEEEEEETTT-S---TT--S---HHHHHHHHHHHCSEEECTTTTEEEEECSEEEEE
T ss_pred HHHHHHhhcEEcCCCCCCCCCCCcEEEEEecccCCCCCCCC--C-CcCHHHHHHHHHHhcCcccCCCcEEEEEeeeEEEE
Confidence 333322211111 1235999999987433222 1 123345666666543211 13588889
Q ss_pred eeCCCC---CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHH
Q 010366 375 ATNRPG---DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEA 451 (512)
Q Consensus 375 ttN~~~---~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l 451 (512)
++|.+. .+++.++|.| .++.++.|+.+....|+..++........-. ..+..... .+. ..+=+.+..+
T Consensus 154 a~~p~~Gr~~is~R~~r~f-~i~~~~~p~~~sl~~If~~il~~~l~~~~f~--~~v~~~~~----~lv--~ati~ly~~i 224 (272)
T PF12775_consen 154 AMNPTGGRNPISPRFLRHF-NILNIPYPSDESLNTIFSSILQSHLKNGGFP--EDVQKLAD----KLV--QATIELYQKI 224 (272)
T ss_dssp EESSTTT--SHHHHHHTTE-EEEE----TCCHHHHHHHHHHHHHTCHTTSS--GGGCCCHH----HHH--HHHHHHHHHH
T ss_pred ecCCCCCCCCCChHHhhhe-EEEEecCCChHHHHHHHHHHHhhhcccCCCC--hHHHHHHH----HHH--HHHHHHHHhh
Confidence 888643 4778888888 8999999999999999999987654321100 00000000 000 0111223333
Q ss_pred HHH--------cCCCcHHHHHHHHHHHHHHHh
Q 010366 452 AAK--------TEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 452 a~~--------t~g~s~~dI~~lv~~~~aa~~ 475 (512)
... ..-|+.|||.+++..+..+..
T Consensus 225 ~~~~~ptp~k~HY~FnlRDlsrv~qGil~~~~ 256 (272)
T PF12775_consen 225 RQQFLPTPSKPHYTFNLRDLSRVFQGILLASP 256 (272)
T ss_dssp HHHS-TTTTCTTTTSHHHHHHHHHHHHHHHHC
T ss_pred hcccCCCCccceeeccHHHHHHHHHHHHhcCh
Confidence 333 235899999999988876643
No 239
>PF01637 Arch_ATPase: Archaeal ATPase; InterPro: IPR011579 This domain has been found in a number of bacterial and archaeal proteins, all of which contain a conserved P-loop motif that is involved in binding ATP.; GO: 0005524 ATP binding; PDB: 2FNA_A 2QEN_A.
Probab=98.90 E-value=3.2e-08 Score=95.10 Aligned_cols=186 Identities=18% Similarity=0.285 Sum_probs=98.6
Q ss_pred ccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC---CeEEEeCCCCCC------------
Q 010366 242 ILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---DYALMTGGDVAP------------ 306 (512)
Q Consensus 242 vg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~---~~~~v~~~~~~~------------ 306 (512)
+|.+...+.|..++.. .+...++|+||.|+|||++++.+...+.. ..+++.......
T Consensus 2 ~gR~~el~~l~~~l~~--------~~~~~~~l~G~rg~GKTsLl~~~~~~~~~~~~~~~y~~~~~~~~~~~~~~~~~~~~ 73 (234)
T PF01637_consen 2 FGREKELEKLKELLES--------GPSQHILLYGPRGSGKTSLLKEFINELKEKGYKVVYIDFLEESNESSLRSFIEETS 73 (234)
T ss_dssp -S-HHHHHHHHHCHHH----------SSEEEEEESTTSSHHHHHHHHHHHCT--EECCCHHCCTTBSHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHh--------hcCcEEEEEcCCcCCHHHHHHHHHHHhhhcCCcEEEEecccchhhhHHHHHHHHHH
Confidence 4555555555544321 12347999999999999999999998732 122222111100
Q ss_pred ------------------------CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhh-hhcccCCCCHHHHHHHHHHHH
Q 010366 307 ------------------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFL-CERNKTYMSEAQRSALNALLF 361 (512)
Q Consensus 307 ------------------------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~-~~~~~~~~~~~~~~~l~~ll~ 361 (512)
........+..++..........||+|||++.+. .... .......+..++.
T Consensus 74 ~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~iiviDe~~~~~~~~~~----~~~~~~~l~~~~~ 149 (234)
T PF01637_consen 74 LADELSEALGISIPSITLEKISKDLSEDSFSALERLLEKLKKKGKKVIIVIDEFQYLAIASEE----DKDFLKSLRSLLD 149 (234)
T ss_dssp HHCHCHHHHHHHCCTSTTEEEECTS-GG-G--HHHHHHHHHHCHCCEEEEEETGGGGGBCTTT----THHHHHHHHHHHH
T ss_pred HHHHHHHHHhhhcccccchhhhhcchhhHHHHHHHHHHHHHhcCCcEEEEEecHHHHhhcccc----hHHHHHHHHHHHh
Confidence 0112234455566666655545899999999986 1111 1233334444444
Q ss_pred HcCCCCCCEEEEEeeCCC------CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhh
Q 010366 362 RTGDQSKDIVLALATNRP------GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQ 435 (512)
Q Consensus 362 ~~~~~~~~viiI~ttN~~------~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~ 435 (512)
... ...++.+|+++... ..-...+..|+.. +.+++.+.++..+++...+... ..
T Consensus 150 ~~~-~~~~~~~v~~~S~~~~~~~~~~~~~~~~~~~~~-~~l~~l~~~e~~~~~~~~~~~~-~~----------------- 209 (234)
T PF01637_consen 150 SLL-SQQNVSIVITGSSDSLMEEFLDDKSPLFGRFSH-IELKPLSKEEAREFLKELFKEL-IK----------------- 209 (234)
T ss_dssp H-----TTEEEEEEESSHHHHHHTT-TTSTTTT---E-EEE----HHHHHHHHHHHHHCC--------------------
T ss_pred hcc-ccCCceEEEECCchHHHHHhhcccCccccccce-EEEeeCCHHHHHHHHHHHHHHh-hc-----------------
Confidence 422 23444444443321 1234456678855 9999999999999999987653 11
Q ss_pred hhhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 436 QKIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 436 ~~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
+ ..+++.++.+...+.| .|+-|..
T Consensus 210 ----~-~~~~~~~~~i~~~~gG-~P~~l~~ 233 (234)
T PF01637_consen 210 ----L-PFSDEDIEEIYSLTGG-NPRYLQE 233 (234)
T ss_dssp ---------HHHHHHHHHHHTT--HHHHHH
T ss_pred ----c-cCCHHHHHHHHHHhCC-CHHHHhc
Confidence 0 1588899999999977 5766654
No 240
>PRK13406 bchD magnesium chelatase subunit D; Provisional
Probab=98.90 E-value=1.3e-08 Score=110.55 Aligned_cols=201 Identities=12% Similarity=0.093 Sum_probs=130.9
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCCCCC--Cchh-HHHHH--------HHHHHHHHhcCCCcEEEEc
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAP--LGPQ-AVTKI--------HQLFDWAKKSKRGLLLFID 334 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~~~~--~~~~-~~~~l--------~~lf~~a~~~~~~~vl~lD 334 (512)
.++|+|.|++|||||+++++++..+.. ||+.+..+.-.. .|+. ....+ ..++.. ...+|||||
T Consensus 25 ~gGv~i~g~~G~~ks~~~r~l~~llp~~~p~r~~p~~~t~~~L~Gg~Dl~~~l~~g~~~~~pGlla~----Ah~GvL~lD 100 (584)
T PRK13406 25 LGGVVLRARAGPVRDRWLAALRALLPAGTPLRRLPPGIADDRLLGGLDLAATLRAGRPVAQRGLLAE----ADGGVLVLA 100 (584)
T ss_pred cceEEEEcCCCcHHHHHHHHHHHhcCCCCCcccCCCCCcHHHccCCchHHhHhhcCCcCCCCCceee----ccCCEEEec
Confidence 368999999999999999999998864 776554322111 1211 11111 011111 124799999
Q ss_pred cchhhhhhcccCCCCHHHHHHHHHHHHHcCC-------------CCCCEEEEEeeCCC---CCCCHHHHccccceeecCC
Q 010366 335 EADAFLCERNKTYMSEAQRSALNALLFRTGD-------------QSKDIVLALATNRP---GDLDSAVADRIDEVLEFPL 398 (512)
Q Consensus 335 Eid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-------------~~~~viiI~ttN~~---~~l~~al~~R~~~~i~~~~ 398 (512)
|+..+ ...++..|++.+++ .+.++++|+|.|.. ..+.+++++||+..+.++.
T Consensus 101 e~n~~------------~~~~~~aLleame~G~vtIeR~G~s~~~Pa~F~LIat~~~~~~~~~L~~~lLDRf~l~v~v~~ 168 (584)
T PRK13406 101 MAERL------------EPGTAARLAAALDTGEVRLERDGLALRLPARFGLVALDEGAEEDERAPAALADRLAFHLDLDG 168 (584)
T ss_pred CcccC------------CHHHHHHHHHHHhCCcEEEEECCcEEecCCCcEEEecCCChhcccCCCHHhHhheEEEEEcCC
Confidence 99986 23455566655542 34678888874432 4589999999999999999
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCC-cHHHHHHHHHHHHHHHh
Q 010366 399 PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGF-SGREIAKLMASVQAAVY 475 (512)
Q Consensus 399 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~-s~~dI~~lv~~~~aa~~ 475 (512)
|+..+..... .... ..... ...+.--.+++..+.+++..+ .|. |.|.-..++..+.+.+.
T Consensus 169 ~~~~~~~~~~-------------~~~~---~I~~A-R~rl~~v~v~~~~l~~i~~~~~~~gv~S~Ra~i~llraARa~Aa 231 (584)
T PRK13406 169 LALRDAREIP-------------IDAD---DIAAA-RARLPAVGPPPEAIAALCAAAAALGIASLRAPLLALRAARAAAA 231 (584)
T ss_pred CChHHhcccC-------------CCHH---HHHHH-HHHHccCCCCHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHHHHH
Confidence 9876543100 0000 00000 001111237888888776653 365 78888899988888888
Q ss_pred CCCCCccCHHHHHHHHHHHHHHHHHH
Q 010366 476 GSENCVLDPSLFREVVDYKVAEHQQR 501 (512)
Q Consensus 476 ~~~~~~it~e~~~~al~~~~~~~~~~ 501 (512)
-.+...|+.+|+.+|+..++.+...+
T Consensus 232 L~Gr~~V~~~dv~~Aa~lvL~hR~~~ 257 (584)
T PRK13406 232 LAGRTAVEEEDLALAARLVLAPRATR 257 (584)
T ss_pred HcCCCCCCHHHHHHHHHHHHHhhccC
Confidence 88889999999999999988776544
No 241
>PRK08939 primosomal protein DnaI; Reviewed
Probab=98.86 E-value=9.4e-09 Score=103.48 Aligned_cols=132 Identities=16% Similarity=0.199 Sum_probs=73.3
Q ss_pred CCCCCccccChHHHH-HHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchh
Q 010366 235 GNGFGDVILHPSLQK-RIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ 310 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~-~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~ 310 (512)
..+|+++...+.... .+............ +...++++|+||||||||+|+.++|+++ |.++..+..+++......
T Consensus 123 ~atf~~~~~~~~~~~~~~~~~~~fi~~~~~-~~~~~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~~~~l~~~lk~ 201 (306)
T PRK08939 123 QASLADIDLDDRDRLDALMAALDFLEAYPP-GEKVKGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLHFPEFIRELKN 201 (306)
T ss_pred cCcHHHhcCCChHHHHHHHHHHHHHHHhhc-cCCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEEHHHHHHHHHH
Confidence 456777765543222 22222222222221 2234689999999999999999999987 667777766554221111
Q ss_pred HH--HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHH-HHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 311 AV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQR-SALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 311 ~~--~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~-~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.. ..+...+. ......+|+|||++.-. .++..+ .+|..+++.- ...+..+|.|||.+
T Consensus 202 ~~~~~~~~~~l~---~l~~~dlLiIDDiG~e~-------~s~~~~~~ll~~Il~~R--~~~~~~ti~TSNl~ 261 (306)
T PRK08939 202 SISDGSVKEKID---AVKEAPVLMLDDIGAEQ-------MSSWVRDEVLGVILQYR--MQEELPTFFTSNFD 261 (306)
T ss_pred HHhcCcHHHHHH---HhcCCCEEEEecCCCcc-------ccHHHHHHHHHHHHHHH--HHCCCeEEEECCCC
Confidence 10 01122222 23446799999998631 123333 3455554322 12345678899875
No 242
>PRK07276 DNA polymerase III subunit delta'; Validated
Probab=98.86 E-value=1.7e-07 Score=93.10 Aligned_cols=130 Identities=22% Similarity=0.281 Sum_probs=89.6
Q ss_pred cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeE-------------EE---eCCCCC---CCch-hHHHHHHHHHHHHH
Q 010366 264 HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYA-------------LM---TGGDVA---PLGP-QAVTKIHQLFDWAK 323 (512)
Q Consensus 264 ~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~-------------~v---~~~~~~---~~~~-~~~~~l~~lf~~a~ 323 (512)
.+..+..+||+|| +||+++|+.+|..+-+.-. .+ +.+|+. +.+. -..+.++.+...+.
T Consensus 20 ~~rl~hAyLf~G~--~G~~~~A~~~A~~llC~~~~~~~~Cg~C~~C~~i~~~~HPD~~~i~p~~~~I~idqIR~l~~~~~ 97 (290)
T PRK07276 20 QDRLNHAYLFSGD--FASFEMALFLAQSLFCEQKEGVLPCGHCRSCRLIEQGEFSDVTVIEPQGQVIKTDTIRELVKNFS 97 (290)
T ss_pred cCCcceeeeeeCC--ccHHHHHHHHHHHHcCCCCCCCCCCCCCHHHHHHhcCCCCCeeeecCCCCcCCHHHHHHHHHHHh
Confidence 3445568999996 6899999999987632110 00 011111 1111 12345555555444
Q ss_pred h---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCC
Q 010366 324 K---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 324 ~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~ 400 (512)
. ..++.|++||++|.+ ....-|.||..+++++.++++|++|+.++.+-|.++||+ ..+.|++ +
T Consensus 98 ~~p~~~~~kV~II~~ad~m------------~~~AaNaLLKtLEEPp~~t~~iL~t~~~~~lLpTI~SRc-q~i~f~~-~ 163 (290)
T PRK07276 98 QSGYEGKQQVFIIKDADKM------------HVNAANSLLKVIEEPQSEIYIFLLTNDENKVLPTIKSRT-QIFHFPK-N 163 (290)
T ss_pred hCcccCCcEEEEeehhhhc------------CHHHHHHHHHHhcCCCCCeEEEEEECChhhCchHHHHcc-eeeeCCC-c
Confidence 3 233569999999996 345678899999999999999999999999999999999 8899976 5
Q ss_pred HHHHHHHHH
Q 010366 401 QEERFKLLK 409 (512)
Q Consensus 401 ~~er~~Il~ 409 (512)
.++..+++.
T Consensus 164 ~~~~~~~L~ 172 (290)
T PRK07276 164 EAYLIQLLE 172 (290)
T ss_pred HHHHHHHHH
Confidence 555555554
No 243
>PRK08181 transposase; Validated
Probab=98.83 E-value=3e-09 Score=104.92 Aligned_cols=121 Identities=21% Similarity=0.283 Sum_probs=72.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHH--HHHHHHHHHHHhcCCCcEEEEccchhhhhhc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAV--TKIHQLFDWAKKSKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~--~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~ 343 (512)
.+++|+||||||||+||.+++..+ |..+++++..++........ ......+.. ...+.+|+|||++.+..
T Consensus 107 ~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~~~~L~~~l~~a~~~~~~~~~l~~---l~~~dLLIIDDlg~~~~-- 181 (269)
T PRK08181 107 ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTRTTDLVQKLQVARRELQLESAIAK---LDKFDLLILDDLAYVTK-- 181 (269)
T ss_pred ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeeeHHHHHHHHHHHHhCCcHHHHHHH---HhcCCEEEEeccccccC--
Confidence 479999999999999999998754 66777777655432111100 111222222 23467999999987532
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC----------CCCHHHHcccc---ceeecCCCCHH
Q 010366 344 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG----------DLDSAVADRID---EVLEFPLPGQE 402 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~----------~l~~al~~R~~---~~i~~~~p~~~ 402 (512)
+......+..++....+. ..+|.|||.+. .+..++++|+- .++.|.-.+..
T Consensus 182 -----~~~~~~~Lf~lin~R~~~---~s~IiTSN~~~~~w~~~~~D~~~a~aildRL~h~~~~i~~~g~s~R 245 (269)
T PRK08181 182 -----DQAETSVLFELISARYER---RSILITANQPFGEWNRVFPDPAMTLAAVDRLVHHATIFEMNVESYR 245 (269)
T ss_pred -----CHHHHHHHHHHHHHHHhC---CCEEEEcCCCHHHHHHhcCCccchhhHHHhhhcCceEEecCCccch
Confidence 223344555565544222 24777888742 23457778773 34666655543
No 244
>PRK06835 DNA replication protein DnaC; Validated
Probab=98.82 E-value=1.7e-08 Score=102.47 Aligned_cols=111 Identities=23% Similarity=0.318 Sum_probs=67.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhH----HHHHHHHHHHHHhcCCCcEEEEccchhhhh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA----VTKIHQLFDWAKKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~----~~~l~~lf~~a~~~~~~~vl~lDEid~l~~ 341 (512)
.+++|+||||||||+||.++|+++ |..+++++..++....... .......+... ....+|+|||++....
T Consensus 184 ~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~t~~~l~~~l~~~~~~~~~~~~~~~~~l---~~~DLLIIDDlG~e~~ 260 (329)
T PRK06835 184 ENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYRTADELIEILREIRFNNDKELEEVYDLL---INCDLLIIDDLGTEKI 260 (329)
T ss_pred CcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEEHHHHHHHHHHHHhccchhHHHHHHHh---ccCCEEEEeccCCCCC
Confidence 579999999999999999999986 6678888776653311110 00001112222 2357999999987421
Q ss_pred hcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-----CCCCHHHHcccc
Q 010366 342 ERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-----GDLDSAVADRID 391 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-----~~l~~al~~R~~ 391 (512)
.+.....+..+++..... +..+|.|||.+ ..+++.+.+|+-
T Consensus 261 -------t~~~~~~Lf~iin~R~~~--~k~tIiTSNl~~~el~~~~~eri~SRL~ 306 (329)
T PRK06835 261 -------TEFSKSELFNLINKRLLR--QKKMIISTNLSLEELLKTYSERISSRLL 306 (329)
T ss_pred -------CHHHHHHHHHHHHHHHHC--CCCEEEECCCCHHHHHHHHhHHHHHHHH
Confidence 233444555555543222 23467788863 235678888873
No 245
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=98.81 E-value=2.4e-07 Score=88.43 Aligned_cols=188 Identities=23% Similarity=0.226 Sum_probs=123.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCC---eEEEeCCCCCCC------------------chhHHHHHHHHHHHHHhcCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAPL------------------GPQAVTKIHQLFDWAKKSKRG 328 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~---~~~v~~~~~~~~------------------~~~~~~~l~~lf~~a~~~~~~ 328 (512)
-+.++|+.|||||+++|++...+... .++++...++.. -......-+.+.....+..+|
T Consensus 53 ~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~~~~~~ai~~~l~~~p~~~~~~~~e~~~~~L~al~~~g~r~ 132 (269)
T COG3267 53 ILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSDATLLEAIVADLESQPKVNVNAVLEQIDRELAALVKKGKRP 132 (269)
T ss_pred eEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhHHHHHHHHHHHhccCccchhHHHHHHHHHHHHHHHHhCCCC
Confidence 48899999999999999777666432 233333222110 011122234444555555667
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCC--EEEEEeeCCCCCCC----HHHHccccceeecCCCCHH
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD--IVLALATNRPGDLD----SAVADRIDEVLEFPLPGQE 402 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~--viiI~ttN~~~~l~----~al~~R~~~~i~~~~p~~~ 402 (512)
.++++||++.+ ....-..+..|.+...+..+. +++|+=......+- ..+-.|++..|.+++.+.+
T Consensus 133 v~l~vdEah~L---------~~~~le~Lrll~nl~~~~~~~l~ivL~Gqp~L~~~lr~~~l~e~~~R~~ir~~l~P~~~~ 203 (269)
T COG3267 133 VVLMVDEAHDL---------NDSALEALRLLTNLEEDSSKLLSIVLIGQPKLRPRLRLPVLRELEQRIDIRIELPPLTEA 203 (269)
T ss_pred eEEeehhHhhh---------ChhHHHHHHHHHhhcccccCceeeeecCCcccchhhchHHHHhhhheEEEEEecCCcChH
Confidence 89999999997 334445555555554455555 44443221111111 2333489766999999999
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCcc
Q 010366 403 ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 482 (512)
Q Consensus 403 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~i 482 (512)
+....++..++..... .+.++++.+..+...+.| .|+.|..++..+..+++..++..|
T Consensus 204 ~t~~yl~~~Le~a~~~---------------------~~l~~~~a~~~i~~~sqg-~P~lin~~~~~Al~~a~~a~~~~v 261 (269)
T COG3267 204 ETGLYLRHRLEGAGLP---------------------EPLFSDDALLLIHEASQG-IPRLINNLATLALDAAYSAGEDGV 261 (269)
T ss_pred HHHHHHHHHHhccCCC---------------------cccCChhHHHHHHHHhcc-chHHHHHHHHHHHHHHHHcCCCcc
Confidence 9999999999775211 123788999999999999 589999999888888887777888
Q ss_pred CHHHHH
Q 010366 483 DPSLFR 488 (512)
Q Consensus 483 t~e~~~ 488 (512)
+...+.
T Consensus 262 ~~a~~~ 267 (269)
T COG3267 262 SEAEIK 267 (269)
T ss_pred chhhcc
Confidence 876654
No 246
>PF13173 AAA_14: AAA domain
Probab=98.78 E-value=1.7e-08 Score=88.60 Aligned_cols=118 Identities=19% Similarity=0.188 Sum_probs=73.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC--CCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 347 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~ 347 (512)
.++|+||.|||||++++.++..+. ..++++++.+.......... +...+.... .....+||||||+.+
T Consensus 4 ~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi~~~~~~~~~~~~~~-~~~~~~~~~-~~~~~~i~iDEiq~~-------- 73 (128)
T PF13173_consen 4 IIILTGPRGVGKTTLLKQLAKDLLPPENILYINFDDPRDRRLADPD-LLEYFLELI-KPGKKYIFIDEIQYL-------- 73 (128)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhcccccceeeccCCHHHHHHhhhh-hHHHHHHhh-ccCCcEEEEehhhhh--------
Confidence 599999999999999999998876 77888887765432111101 122222221 123679999999986
Q ss_pred CCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC----CCHHHHccccceeecCCCCHHHH
Q 010366 348 MSEAQRSALNALLFRTGDQSKDIVLALATNRPGD----LDSAVADRIDEVLEFPLPGQEER 404 (512)
Q Consensus 348 ~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~----l~~al~~R~~~~i~~~~p~~~er 404 (512)
+.....+..+.. ...++.||+|++.... ....+..|. ..+.+.|++..|.
T Consensus 74 --~~~~~~lk~l~d----~~~~~~ii~tgS~~~~l~~~~~~~l~gr~-~~~~l~Plsf~E~ 127 (128)
T PF13173_consen 74 --PDWEDALKFLVD----NGPNIKIILTGSSSSLLSKDIAESLAGRV-IEIELYPLSFREF 127 (128)
T ss_pred --ccHHHHHHHHHH----hccCceEEEEccchHHHhhcccccCCCeE-EEEEECCCCHHHh
Confidence 123344444443 2245566666554333 344555677 6788888887763
No 247
>PRK06921 hypothetical protein; Provisional
Probab=98.77 E-value=3.8e-08 Score=97.29 Aligned_cols=115 Identities=19% Similarity=0.187 Sum_probs=63.0
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchh-hhhh
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA-FLCE 342 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~-l~~~ 342 (512)
..+++|+||||||||+|+.++|+.+ +..+++++..++..............+ .......+|+|||++. +.+.
T Consensus 117 ~~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~~~~l~~~l~~~~~~~~~~~---~~~~~~dlLiIDDl~~~~~g~ 193 (266)
T PRK06921 117 KNSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFPFVEGFGDLKDDFDLLEAKL---NRMKKVEVLFIDDLFKPVNGK 193 (266)
T ss_pred CCeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEEHHHHHHHHHHHHHHHHHHH---HHhcCCCEEEEeccccccCCC
Confidence 3579999999999999999999875 456677765443221111111111111 2233467999999943 1111
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-C---CCCHHHHccc
Q 010366 343 RNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-G---DLDSAVADRI 390 (512)
Q Consensus 343 ~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-~---~l~~al~~R~ 390 (512)
...++.....|..+++....... .+|.|||.+ . .+++.+.+|+
T Consensus 194 ---e~~t~~~~~~lf~iin~R~~~~k--~tIitsn~~~~el~~~~~~l~sRi 240 (266)
T PRK06921 194 ---PRATEWQIEQMYSVLNYRYLNHK--PILISSELTIDELLDIDEALGSRI 240 (266)
T ss_pred ---ccCCHHHHHHHHHHHHHHHHCCC--CEEEECCCCHHHHhhhhhHHHHHH
Confidence 11122334445555554322222 356788763 2 2356666654
No 248
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=98.76 E-value=3e-08 Score=97.28 Aligned_cols=126 Identities=22% Similarity=0.292 Sum_probs=69.4
Q ss_pred CccccChHHH-HHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHH
Q 010366 239 GDVILHPSLQ-KRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTK 314 (512)
Q Consensus 239 ~~vvg~~~~~-~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~ 314 (512)
-++=+.+... ..+..+........ ...+++|+||||||||+||-++++++ |.++..++.+++......+...
T Consensus 79 ~d~~~~~~~~~~~l~~~~~~~~~~~----~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 79 FDFEFQPGIDKKALEDLASLVEFFE----RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred ccccCCcchhHHHHHHHHHHHHHhc----cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 4444444433 33344443332332 33589999999999999999998886 6777777766653311111110
Q ss_pred HHHHHHH-HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 315 IHQLFDW-AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 315 l~~lf~~-a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
...-.. ........+|+|||+...- .+......+..++...... ... |.|||.+
T Consensus 155 -~~~~~~l~~~l~~~dlLIiDDlG~~~-------~~~~~~~~~~q~I~~r~~~--~~~-~~tsN~~ 209 (254)
T COG1484 155 -GRLEEKLLRELKKVDLLIIDDIGYEP-------FSQEEADLLFQLISRRYES--RSL-IITSNLS 209 (254)
T ss_pred -CchHHHHHHHhhcCCEEEEecccCcc-------CCHHHHHHHHHHHHHHHhh--ccc-eeecCCC
Confidence 000001 1113447799999998842 2333444444444433222 222 8888875
No 249
>PRK06526 transposase; Provisional
Probab=98.73 E-value=1.3e-08 Score=99.80 Aligned_cols=100 Identities=26% Similarity=0.295 Sum_probs=57.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhccc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNK 345 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~ 345 (512)
.+++|+||||||||++|.+|+..+ |..+.+++..++........ ....+........++.+|+|||++.+..
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t~~~l~~~l~~~~-~~~~~~~~l~~l~~~dlLIIDD~g~~~~---- 173 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFATAAQWVARLAAAH-HAGRLQAELVKLGRYPLLIVDEVGYIPF---- 173 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhhHHHHHHHHHHHH-hcCcHHHHHHHhccCCEEEEcccccCCC----
Confidence 479999999999999999998764 45555444433221000000 0001111222234478999999997521
Q ss_pred CCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 346 TYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 346 ~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
+......+..++....+. ..+|+|||.+
T Consensus 174 ---~~~~~~~L~~li~~r~~~---~s~IitSn~~ 201 (254)
T PRK06526 174 ---EPEAANLFFQLVSSRYER---ASLIVTSNKP 201 (254)
T ss_pred ---CHHHHHHHHHHHHHHHhc---CCEEEEcCCC
Confidence 234445566666543222 2477788875
No 250
>KOG1970 consensus Checkpoint RAD17-RFC complex, RAD17/RAD24 component [Cell cycle control, cell division, chromosome partitioning; Replication, recombination and repair]
Probab=98.73 E-value=1e-06 Score=92.08 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=120.0
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCC-C---CC
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD-V---AP 306 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~-~---~~ 306 (512)
.++.|.+.+++-.+..-+..+...+..... ..++.+.+-+||+||+||||||+++.|+.++|..++.-+.+- + ..
T Consensus 74 eKy~P~t~eeLAVHkkKI~eVk~WL~~~~~-~~~~l~~~iLLltGPsGcGKSTtvkvLskelg~~~~Ew~Npi~~~~~~~ 152 (634)
T KOG1970|consen 74 EKYKPRTLEELAVHKKKISEVKQWLKQVAE-FTPKLGSRILLLTGPSGCGKSTTVKVLSKELGYQLIEWSNPINLKEPEN 152 (634)
T ss_pred HhcCcccHHHHhhhHHhHHHHHHHHHHHHH-hccCCCceEEEEeCCCCCCchhHHHHHHHhhCceeeeecCCcccccccc
Confidence 366777888887777767777655442222 223344456999999999999999999999998777544211 1 00
Q ss_pred Cch-------hHHHHH---HHHHHHHHh-----------cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC
Q 010366 307 LGP-------QAVTKI---HQLFDWAKK-----------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 365 (512)
Q Consensus 307 ~~~-------~~~~~l---~~lf~~a~~-----------~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 365 (512)
... -....+ ......+.+ ...+.+||+||+=..+... .....+.+|. ++...
T Consensus 153 ~h~~t~~~~~~~~s~L~~fesFler~~kyg~l~~~g~~~~~~~~liLveDLPn~~~~d----~~~~f~evL~-~y~s~-- 225 (634)
T KOG1970|consen 153 LHNETSFLMFPYQSQLAVFESFLLRATKYGSLQMSGDDLRTDKKLILVEDLPNQFYRD----DSETFREVLR-LYVSI-- 225 (634)
T ss_pred ccccchhcccchhhHHHHHHHHHHHHHhhchhhhcccccccCceEEEeeccchhhhhh----hHHHHHHHHH-HHHhc--
Confidence 000 011111 112222211 1124489999997754321 1223444444 22222
Q ss_pred CCCCEEEEEe-eCCCCCCCHH------HH--ccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhh
Q 010366 366 QSKDIVLALA-TNRPGDLDSA------VA--DRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQ 436 (512)
Q Consensus 366 ~~~~viiI~t-tN~~~~l~~a------l~--~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
...+++||.| ++.++..++. +. .|+ ..|.|.|-...-.++.+...+.......+.
T Consensus 226 g~~PlIf~iTd~~~~g~nnq~rlf~~d~q~~~ri-~~IsFNPIa~T~MKK~L~ric~~e~~~~s~--------------- 289 (634)
T KOG1970|consen 226 GRCPLIFIITDSLSNGNNNQDRLFPKDIQEEPRI-SNISFNPIAPTIMKKFLKRICRIEANKKSG--------------- 289 (634)
T ss_pred CCCcEEEEEeccccCCCcchhhhchhhhhhccCc-ceEeecCCcHHHHHHHHHHHHHHhcccccC---------------
Confidence 2233555554 2333333221 11 266 788999998888888877777654322110
Q ss_pred hhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 010366 437 KIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV 474 (512)
Q Consensus 437 ~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~ 474 (512)
++ .-+...++.++..+ ++||+.+++.+|..+
T Consensus 290 -~k--~~~~~~v~~i~~~s----~GDIRsAInsLQlss 320 (634)
T KOG1970|consen 290 -IK--VPDTAEVELICQGS----GGDIRSAINSLQLSS 320 (634)
T ss_pred -Cc--CchhHHHHHHHHhc----CccHHHHHhHhhhhc
Confidence 11 12244567777554 449999999998874
No 251
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=98.72 E-value=4e-09 Score=97.96 Aligned_cols=110 Identities=27% Similarity=0.359 Sum_probs=54.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchh--HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ--AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~--~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~ 343 (512)
.+++|+||||||||++|.+++.++ |.++.+++..++...... ........+.... ...+|+|||+....
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~~~~L~~~l~~~~~~~~~~~~~~~l~---~~dlLilDDlG~~~--- 121 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFITASDLLDELKQSRSDGSYEELLKRLK---RVDLLILDDLGYEP--- 121 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEHHHHHHHHHCCHCCTTHCHHHHHHH---TSSCEEEETCTSS----
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEeecCceeccccccccccchhhhcCccc---cccEecccccceee---
Confidence 589999999999999999998764 677777776554220000 0001112233232 25799999997631
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC----------CCCCHHHHcccc
Q 010366 344 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP----------GDLDSAVADRID 391 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~----------~~l~~al~~R~~ 391 (512)
.+......+..++..-.+ . -.+|.|||.. ..+..++++|+-
T Consensus 122 ----~~~~~~~~l~~ii~~R~~--~-~~tIiTSN~~~~~l~~~~~d~~~a~aildRl~ 172 (178)
T PF01695_consen 122 ----LSEWEAELLFEIIDERYE--R-KPTIITSNLSPSELEEVLGDRALAEAILDRLL 172 (178)
T ss_dssp ------HHHHHCTHHHHHHHHH--T--EEEEEESS-HHHHHT----------------
T ss_pred ----ecccccccchhhhhHhhc--c-cCeEeeCCCchhhHhhcccccccccccccccc
Confidence 122333444445444322 2 2466799974 123456666663
No 252
>PF12774 AAA_6: Hydrolytic ATP binding site of dynein motor region D1; PDB: 3VKH_A 3VKG_A 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A.
Probab=98.70 E-value=3.9e-07 Score=87.94 Aligned_cols=147 Identities=18% Similarity=0.231 Sum_probs=83.6
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQL 318 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~l 318 (512)
..+|.-|-...-...+..+.... .+-.++||+|||||++++.+|..+|.+++.++|++-.+. ..+.++
T Consensus 10 ~rlv~Tplt~r~~~~l~~al~~~-------~~~~~~GpagtGKtetik~La~~lG~~~~vfnc~~~~~~-----~~l~ri 77 (231)
T PF12774_consen 10 PRLVITPLTDRCFLTLTQALSLN-------LGGALSGPAGTGKTETIKDLARALGRFVVVFNCSEQMDY-----QSLSRI 77 (231)
T ss_dssp ------HHHHHHHHHHHHHHCTT-------TEEEEESSTTSSHHHHHHHHHHCTT--EEEEETTSSS-H-----HHHHHH
T ss_pred CCceechHHHHHHHHHHHHhccC-------CCCCCcCCCCCCchhHHHHHHHHhCCeEEEecccccccH-----HHHHHH
Confidence 35666666666555555444221 246789999999999999999999999999999885532 334445
Q ss_pred HHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc----CC-------------CCCCEEEEEeeCC---
Q 010366 319 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----GD-------------QSKDIVLALATNR--- 378 (512)
Q Consensus 319 f~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~~-------------~~~~viiI~ttN~--- 378 (512)
+.-+... ++.++|||++.+ +...-.++...+..+ .. -..++-++.|.|.
T Consensus 78 l~G~~~~--GaW~cfdefnrl---------~~~vLS~i~~~i~~i~~al~~~~~~~~~~g~~i~l~~~~~iFiT~np~y~ 146 (231)
T PF12774_consen 78 LKGLAQS--GAWLCFDEFNRL---------SEEVLSVISQQIQSIQDALRAKQKSFTLEGQEIKLNPNCGIFITMNPGYA 146 (231)
T ss_dssp HHHHHHH--T-EEEEETCCCS---------SHHHHHHHHHHHHHHHHHHHCTSSEEEETTCEEE--TT-EEEEEE-B-CC
T ss_pred HHHHhhc--Cchhhhhhhhhh---------hHHHHHHHHHHHHHHHHhhcccccccccCCCEEEEccceeEEEeeccccC
Confidence 5544433 789999999997 323333333322221 11 1224556667774
Q ss_pred -CCCCCHHHHccccceeecCCCCHHHHHHHHH
Q 010366 379 -PGDLDSAVADRIDEVLEFPLPGQEERFKLLK 409 (512)
Q Consensus 379 -~~~l~~al~~R~~~~i~~~~p~~~er~~Il~ 409 (512)
...+++.+..-| +.+.+..||.....+++-
T Consensus 147 gr~~LP~nLk~lF-Rpvam~~PD~~~I~ei~L 177 (231)
T PF12774_consen 147 GRSELPENLKALF-RPVAMMVPDLSLIAEILL 177 (231)
T ss_dssp CC--S-HHHCTTE-EEEE--S--HHHHHHHHH
T ss_pred CcccCCHhHHHHh-heeEEeCCCHHHHHHHHH
Confidence 346788887778 889999999877766643
No 253
>PF00493 MCM: MCM2/3/5 family This family extends the MCM domain of Prosite.; InterPro: IPR001208 MCM proteins are DNA-dependent ATPases required for the initiation of eukaryotic DNA replication [, , ]. In eukaryotes there is a family of six proteins, MCM2 to MCM7. They were first identified in yeast where most of them have a direct role in the initiation of chromosomal DNA replication by interacting directly with autonomously replicating sequences (ARS). They were thus called minichromosome maintenance proteins, MCM proteins []. This family is also present in the archebacteria in 1 to 4 copies. Methanocaldococcus jannaschii (Methanococcus jannaschii) has four members, MJ0363, MJ0961, MJ1489 and MJECL13. The "MCM motif" contains Walker-A and Walker-B type nucleotide binding motifs. The diagnostic sequence defining the MCMs is IDEFDKM. Only Mcm2 (aka Cdc19 or Nda1) has been subjected to mutational analysis in this region, and most mutations abolish its activity []. The presence of a putative ATP-binding domain implies that these proteins may be involved in an ATP-consuming step in the initiation of DNA replication in eukaryotes. The MCM proteins bind together in a large complex []. Within this complex, individual subunits associate with different affinities, and there is a tightly associated core of Mcm4 (Cdc21), Mcm6 (Mis5) and Mcm7 []. This core complex in human MCMs has been associated with helicase activity in vitro [], leading to the suggestion that the MCM proteins are the eukaryotic replicative helicase. Schizosaccharomyces pombe (Fission yeast) MCMs, like those in metazoans, are found in the nucleus throughout the cell cycle. This is in contrast to the Saccharomyces cerevisiae (Baker's yeast) in which MCM proteins move in and out of the nucleus during each cell cycle. The assembly of the MCM complex in S. pombe is required for MCM localisation, ensuring that only intact MCM complexes remain in the nucleus [].; GO: 0003677 DNA binding, 0005524 ATP binding, 0006260 DNA replication; PDB: 3F8T_A 3F9V_A.
Probab=98.70 E-value=2.5e-08 Score=101.76 Aligned_cols=242 Identities=18% Similarity=0.155 Sum_probs=127.7
Q ss_pred CccccChHHHHHHH-HHHHHhhchhhc---CCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCch-----
Q 010366 239 GDVILHPSLQKRIR-QLSGATANTKAH---NAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGP----- 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~-~~~~~~~~~~~~---~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~----- 309 (512)
-.+.|.+.++..+. .+.......... .+..-|+||+|.||||||.+.+.++..... .+++++......|-
T Consensus 24 P~i~g~~~iK~aill~L~~~~~~~~~~~~~~r~~ihiLlvGdpg~gKS~ll~~~~~~~pr-~v~~~g~~~s~~gLta~~~ 102 (331)
T PF00493_consen 24 PSIYGHEDIKKAILLQLFGGVEKNDPDGTRIRGNIHILLVGDPGTGKSQLLKYVAKLAPR-SVYTSGKGSSAAGLTASVS 102 (331)
T ss_dssp STTTT-HHHHHHHCCCCTT--SCCCCT-TEE--S--EEEECSCHHCHHHHHHCCCCT-SS-EEEEECCGSTCCCCCEEEC
T ss_pred CcCcCcHHHHHHHHHHHHhccccccccccccccccceeeccchhhhHHHHHHHHHhhCCc-eEEECCCCcccCCccceec
Confidence 46778888777762 222111110000 012238999999999999999988654433 33444322211000
Q ss_pred ----hHHHHHH-HHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc----CC------CCCCEEEEE
Q 010366 310 ----QAVTKIH-QLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----GD------QSKDIVLAL 374 (512)
Q Consensus 310 ----~~~~~l~-~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~~------~~~~viiI~ 374 (512)
.....+. ..+- ...++|++|||+|++ ....+..+...+..- .. .+..+.|++
T Consensus 103 ~d~~~~~~~leaGalv----lad~GiccIDe~dk~---------~~~~~~~l~eaMEqq~isi~kagi~~~l~ar~svla 169 (331)
T PF00493_consen 103 RDPVTGEWVLEAGALV----LADGGICCIDEFDKM---------KEDDRDALHEAMEQQTISIAKAGIVTTLNARCSVLA 169 (331)
T ss_dssp CCGGTSSECEEE-HHH----HCTTSEEEECTTTT-----------CHHHHHHHHHHHCSCEEECTSSSEEEEE---EEEE
T ss_pred cccccceeEEeCCchh----cccCceeeecccccc---------cchHHHHHHHHHHcCeeccchhhhcccccchhhhHH
Confidence 0000000 0111 133789999999996 334455555555431 11 234578899
Q ss_pred eeCCCC-------------CCCHHHHccccceeec-CCCCHHHHHHHHHHHHHHHhhhhC-----------CCCCcchhh
Q 010366 375 ATNRPG-------------DLDSAVADRIDEVLEF-PLPGQEERFKLLKLYLDKYIAQAG-----------SRKPGLVHR 429 (512)
Q Consensus 375 ttN~~~-------------~l~~al~~R~~~~i~~-~~p~~~er~~Il~~~l~~~~~~~~-----------~~~~~~~~~ 429 (512)
++|... .+++.+++|||.++.+ +.|+.+.-..+.++.+........ ......+..
T Consensus 170 a~NP~~g~~~~~~~~~~ni~l~~~LLSRFDLif~l~D~~d~~~D~~la~~il~~~~~~~~~~~~~~~~~~~~~~~~~lr~ 249 (331)
T PF00493_consen 170 AANPKFGRYDPNKSLSENINLPPPLLSRFDLIFLLRDKPDEEEDERLAEHILDSHRNGKKSKEKKIKKNDKPISEDLLRK 249 (331)
T ss_dssp EE--TT--S-TTS-CGCCT-S-CCCHCC-SEEECC--TTT-HHHHHHHHHHHTTT---S--------SSS-TT-HCCCHH
T ss_pred HHhhhhhhcchhhhhHHhcccchhhHhhcCEEEEeccccccccccccceEEEeccccccccccccccccCCccCHHHHHH
Confidence 998754 4778999999988765 667766666666666654432210 001122222
Q ss_pred hhhhhhhhhhhcCCCHHHHHHHHHHcC-------------CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 430 LFKSEQQKIEIKGLTDDILMEAAAKTE-------------GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~~~~l~~la~~t~-------------g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
++.-... ...+.+++++.+.|...+. ..++|.++.|++.+++.+...-...++.+|+..|+.-..
T Consensus 250 yI~yar~-~~~P~ls~ea~~~I~~~Yv~lR~~~~~~~~~~~iT~R~LeSLIRLseA~AKl~lr~~V~~~Dv~~Ai~L~~ 327 (331)
T PF00493_consen 250 YIAYARQ-NIHPVLSEEAKELIINYYVELRKESKSNNKSIPITIRQLESLIRLSEAHAKLRLRDEVTEEDVEEAIRLFE 327 (331)
T ss_dssp HHHHHHH-HC--EE-HHCHHHHHHHHCCCCHCHHCHSS-B-SSCCCCCHHHHHHHHHHHCTTSSECSHHHHHHHHHHHH
T ss_pred HHHHHHh-hcccccCHHHHHHHHHHHHHhcccccccccccccchhhHHHHHHHHHHHHHHhccCceeHHHHHHHHHHHH
Confidence 2221111 2224588888887776631 356788999999999999988889999999999997654
No 254
>COG3284 AcoR Transcriptional activator of acetoin/glycerol metabolism [Secondary metabolites biosynthesis, transport, and catabolism / Transcription]
Probab=98.69 E-value=1.2e-07 Score=100.85 Aligned_cols=178 Identities=24% Similarity=0.260 Sum_probs=117.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHh--CCCeEEEeCCCCCCC--chhHHHHHHHHHHHHHh--------cCCCcEEEEccch
Q 010366 270 NMLFYGPPGTGKTMAARELARKS--GLDYALMTGGDVAPL--GPQAVTKIHQLFDWAKK--------SKRGLLLFIDEAD 337 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l--~~~~~~v~~~~~~~~--~~~~~~~l~~lf~~a~~--------~~~~~vl~lDEid 337 (512)
.+++.|.|||||-.+++++.... ..||+.+||..++.. +.+....+..-|.-+.. ...++.+|+|||.
T Consensus 338 pvll~GEtGtGKe~laraiH~~s~~~gpfvAvNCaAip~~liesELFGy~~GafTga~~kG~~g~~~~A~gGtlFldeIg 417 (606)
T COG3284 338 PVLLQGETGTGKEVLARAIHQNSEAAGPFVAVNCAAIPEALIESELFGYVAGAFTGARRKGYKGKLEQADGGTLFLDEIG 417 (606)
T ss_pred CeEecCCcchhHHHHHHHHHhcccccCCeEEEEeccchHHhhhHHHhccCccccccchhccccccceecCCCccHHHHhh
Confidence 39999999999999999996654 478999999988652 11222222222222221 2236799999999
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHc-----C--CCCCCEEEEEeeCCC-------CCCCHHHHccccceeecCCCCHHH
Q 010366 338 AFLCERNKTYMSEAQRSALNALLFRT-----G--DQSKDIVLALATNRP-------GDLDSAVADRIDEVLEFPLPGQEE 403 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~l~~ll~~~-----~--~~~~~viiI~ttN~~-------~~l~~al~~R~~~~i~~~~p~~~e 403 (512)
.+ +.+.+..|..+|++- + ....+|.||+||+.+ ..+...+.=|+ ..+.+..|+..+
T Consensus 418 d~---------p~~~Qs~LLrVl~e~~v~p~g~~~~~vdirvi~ath~dl~~lv~~g~fredLyyrL-~~~~i~lP~lr~ 487 (606)
T COG3284 418 DM---------PLALQSRLLRVLQEGVVTPLGGTRIKVDIRVIAATHRDLAQLVEQGRFREDLYYRL-NAFVITLPPLRE 487 (606)
T ss_pred hc---------hHHHHHHHHHHHhhCceeccCCcceeEEEEEEeccCcCHHHHHHcCCchHHHHHHh-cCeeeccCchhc
Confidence 86 667777777777752 1 134468999999873 35666666687 667777777777
Q ss_pred HHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 010366 404 RFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 404 r~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~ 475 (512)
|..-+.....-+...+.+. -.++++.+..|..+-+..+-+++.+++..+.+.+.
T Consensus 488 R~d~~~~l~~~~~~~~~~~------------------~~l~~~~~~~l~~~~WPGNirel~~v~~~~~~l~~ 541 (606)
T COG3284 488 RSDRIPLLDRILKRENDWR------------------LQLDDDALARLLAYRWPGNIRELDNVIERLAALSD 541 (606)
T ss_pred ccccHHHHHHHHHHccCCC------------------ccCCHHHHHHHHhCCCCCcHHHHHHHHHHHHHcCC
Confidence 7654333332222111111 13889999999888777788888888865555443
No 255
>KOG2170 consensus ATPase of the AAA+ superfamily [General function prediction only]
Probab=98.69 E-value=4.1e-07 Score=88.58 Aligned_cols=166 Identities=14% Similarity=0.134 Sum_probs=104.1
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC-----CCeEEE--eCCCCCC--Cch
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALM--TGGDVAP--LGP 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v--~~~~~~~--~~~ 309 (512)
..+.||.-+++.|...+........+..| -.+=|+|+|||||.++++.||+.+. .+++.. ....++. ...
T Consensus 82 ~~lfGQHla~~~Vv~alk~~~~n~~p~KP-LvLSfHG~tGTGKN~Va~iiA~n~~~~Gl~S~~V~~fvat~hFP~~~~ie 160 (344)
T KOG2170|consen 82 RALFGQHLAKQLVVNALKSHWANPNPRKP-LVLSFHGWTGTGKNYVAEIIAENLYRGGLRSPFVHHFVATLHFPHASKIE 160 (344)
T ss_pred HHhhchHHHHHHHHHHHHHHhcCCCCCCC-eEEEecCCCCCchhHHHHHHHHHHHhccccchhHHHhhhhccCCChHHHH
Confidence 45789999988886666555444444344 3566899999999999999999863 333321 1222222 112
Q ss_pred hHHHHHHH-HHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc----CCCCCCEEEEEeeCCCC----
Q 010366 310 QAVTKIHQ-LFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----GDQSKDIVLALATNRPG---- 380 (512)
Q Consensus 310 ~~~~~l~~-lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----~~~~~~viiI~ttN~~~---- 380 (512)
.....+.. +.+.+.... .++.++||+|++ ++..-+++.-+|+.. +-...+.++|+-+|...
T Consensus 161 ~Yk~eL~~~v~~~v~~C~-rslFIFDE~DKm---------p~gLld~lkpfLdyyp~v~gv~frkaIFIfLSN~gg~eI~ 230 (344)
T KOG2170|consen 161 DYKEELKNRVRGTVQACQ-RSLFIFDEVDKL---------PPGLLDVLKPFLDYYPQVSGVDFRKAIFIFLSNAGGSEIA 230 (344)
T ss_pred HHHHHHHHHHHHHHHhcC-CceEEechhhhc---------CHhHHHHHhhhhccccccccccccceEEEEEcCCcchHHH
Confidence 22223322 223333333 579999999997 567777788888742 23556788888887521
Q ss_pred -------------------CCCHHHH-------------------ccccceeecCCCCHHHHHHHHHHHHHHH
Q 010366 381 -------------------DLDSAVA-------------------DRIDEVLEFPLPGQEERFKLLKLYLDKY 415 (512)
Q Consensus 381 -------------------~l~~al~-------------------~R~~~~i~~~~p~~~er~~Il~~~l~~~ 415 (512)
.+.|++. .++|..|.|.|.+.......++..+...
T Consensus 231 ~~aL~~~~~g~~re~~~l~~~E~~L~~~~~n~~~~Gl~~S~li~~~lid~fIPFLPLek~hV~~C~r~el~~r 303 (344)
T KOG2170|consen 231 RIALENARNGKPREQLRLKSFEPALMQSAFNEKAGGLVHSRLISNNLIDHFIPFLPLEKRHVRSCIRAELRKR 303 (344)
T ss_pred HHHHHHHHcCCCcccchhhhhhHHHHHhhhccccccccccccchhhHHhhccCcCcccHHHHHHHHHHHHHhc
Confidence 1122111 1567788888888888888877777653
No 256
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=98.60 E-value=2.5e-06 Score=87.93 Aligned_cols=195 Identities=18% Similarity=0.175 Sum_probs=96.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 348 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~ 348 (512)
-|+++.||||||||+++.+++...- ..++ .+.. .......+.. ........+.+|+|||+..+...
T Consensus 210 ~Nli~lGp~GTGKThla~~l~~~~a----~~sG-~f~T-~a~Lf~~L~~--~~lg~v~~~DlLI~DEvgylp~~------ 275 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLSPYVI----LISG-GTIT-VAKLFYNIST--RQIGLVGRWDVVAFDEVATLKFA------ 275 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHhHHHH----HHcC-CcCc-HHHHHHHHHH--HHHhhhccCCEEEEEcCCCCcCC------
Confidence 4799999999999999999876610 0011 1110 0111111111 22223345789999999986322
Q ss_pred CHHHHHHHHHHHHHcCC-----------CCCCEEEEEeeCC---------------CCC-CCHHHHcccccee---ecCC
Q 010366 349 SEAQRSALNALLFRTGD-----------QSKDIVLALATNR---------------PGD-LDSAVADRIDEVL---EFPL 398 (512)
Q Consensus 349 ~~~~~~~l~~ll~~~~~-----------~~~~viiI~ttN~---------------~~~-l~~al~~R~~~~i---~~~~ 398 (512)
...+.+..+-..+.+ ....+++++-+|. |+. -|.||++||.-.+ ++|.
T Consensus 276 --~~~~~v~imK~yMesg~fsRG~~~~~a~as~vfvGNi~~~v~~~~~~~~Lf~~lP~~~~DsAflDRiH~yiPGWeipk 353 (449)
T TIGR02688 276 --KPKELIGILKNYMESGSFTRGDETKSSDASFVFLGNVPLTSEHMVKNSDLFSPLPEFMRDSAFLDRIHGYLPGWEIPK 353 (449)
T ss_pred --chHHHHHHHHHHHHhCceeccceeeeeeeEEEEEcccCCcchhhcCcccccccCChhhhhhHHHHhhhccCCCCcCcc
Confidence 112233333333321 1122344443332 111 1557777874333 4555
Q ss_pred CCHHHHH---HHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh
Q 010366 399 PGQEERF---KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVY 475 (512)
Q Consensus 399 p~~~er~---~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~ 475 (512)
.+.+... .++--++...... +.+ . ++ .+.++.......+++.||..++-..+.....
T Consensus 354 ~~~e~~t~~yGl~~DylsE~l~~-----------lR~-----~---~~-~~~~~~~~~l~~~~~~RD~~aV~kt~SgllK 413 (449)
T TIGR02688 354 IRKEMFSNGYGFVVDYFAEALRE-----------LRE-----R---EY-ADIVDRHFSLSPNLNTRDVIAVKKTFSGLMK 413 (449)
T ss_pred CCHHHcccCCcchHHHHHHHHHH-----------HHh-----h---HH-HHhhhhheecCCCcchhhHHHHHHHHHHHHH
Confidence 5543221 1222222222111 000 0 01 1123444444567899998877655444332
Q ss_pred C-CCCCccCHHHHHHHHHHHHHHHH
Q 010366 476 G-SENCVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 476 ~-~~~~~it~e~~~~al~~~~~~~~ 499 (512)
- -+...+|.++++.+++.++...+
T Consensus 414 LL~P~~~~~~ee~~~~l~~Ale~Rr 438 (449)
T TIGR02688 414 ILFPHGTITKEEFTECLEPALEGRQ 438 (449)
T ss_pred HhCCCCCCCHHHHHHHHHHHHHHHH
Confidence 1 34467999999999987776543
No 257
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.58 E-value=1.5e-07 Score=82.30 Aligned_cols=71 Identities=30% Similarity=0.401 Sum_probs=44.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh--------CCCeEEEeCCCCCC----------------Cc-hhHHHHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS--------GLDYALMTGGDVAP----------------LG-PQAVTKIHQLFDWAK 323 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l--------~~~~~~v~~~~~~~----------------~~-~~~~~~l~~lf~~a~ 323 (512)
+.++++||||+|||++++.++..+ ..+++.+++..... .. .........+.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~l~~~~~~~l~ 84 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKSRQTSDELRSLLIDALD 84 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSSTS-HHHHHHHHHHHHH
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccccCCHHHHHHHHHHHHH
Confidence 469999999999999999999887 66777777543321 11 112222333333344
Q ss_pred hcCCCcEEEEccchhhh
Q 010366 324 KSKRGLLLFIDEADAFL 340 (512)
Q Consensus 324 ~~~~~~vl~lDEid~l~ 340 (512)
... ..+|+|||+|.+.
T Consensus 85 ~~~-~~~lviDe~~~l~ 100 (131)
T PF13401_consen 85 RRR-VVLLVIDEADHLF 100 (131)
T ss_dssp HCT-EEEEEEETTHHHH
T ss_pred hcC-CeEEEEeChHhcC
Confidence 333 4699999999973
No 258
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=98.51 E-value=1.4e-06 Score=78.54 Aligned_cols=107 Identities=19% Similarity=0.253 Sum_probs=61.6
Q ss_pred eEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC------------------------CchhHHHHHHHHHHHHH
Q 010366 271 MLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------------------------LGPQAVTKIHQLFDWAK 323 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~------------------------~~~~~~~~l~~lf~~a~ 323 (512)
++|+||||+|||+++..++... +.++++++...... .................
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEIEELTERLIGESLKGALDNLIIVFATADDPAAARLLSKAERLR 81 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcchHHHHHHHhhhhhccccccEEEEEcCCCCCcHHHHHHHHHHHH
Confidence 7899999999999999998876 45666665433221 00011111112222333
Q ss_pred hcCCCcEEEEccchhhhhhccc--CCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 324 KSKRGLLLFIDEADAFLCERNK--TYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 324 ~~~~~~vl~lDEid~l~~~~~~--~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
...++.+|+|||+..+...... ..........+..++..... .++.+|++++..
T Consensus 82 ~~~~~~~lviDe~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~--~~~~vv~~~~~~ 137 (165)
T cd01120 82 ERGGDDLIILDELTRLVRALREIREGYPGELDEELRELLERARK--GGVTVIFTLQVP 137 (165)
T ss_pred hCCCCEEEEEEcHHHHHHHHHHHHhcCChHHHHHHHHHHHHHhc--CCceEEEEEecC
Confidence 3455789999999998654321 11223445566666665533 355555555443
No 259
>PRK09183 transposase/IS protein; Provisional
Probab=98.51 E-value=2.2e-07 Score=91.60 Aligned_cols=99 Identities=22% Similarity=0.322 Sum_probs=57.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhH--HHHHHHHHHHHHhcCCCcEEEEccchhhhhhc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA--VTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~--~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~ 343 (512)
.+++|+||||||||+++.+++... |..+.++++.++....... ...+...+... ...+.+++|||++....
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~~~~l~~~l~~a~~~~~~~~~~~~~--~~~~dlLiiDdlg~~~~-- 178 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTTAADLLLQLSTAQRQGRYKTTLQRG--VMAPRLLIIDEIGYLPF-- 178 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeHHHHHHHHHHHHHCCcHHHHHHHH--hcCCCEEEEcccccCCC--
Confidence 479999999999999999997653 5666666654433110000 01122233322 23467999999987421
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 344 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
+......|..++....+. . .+|.|||.+
T Consensus 179 -----~~~~~~~lf~li~~r~~~--~-s~iiTsn~~ 206 (259)
T PRK09183 179 -----SQEEANLFFQVIAKRYEK--G-SMILTSNLP 206 (259)
T ss_pred -----ChHHHHHHHHHHHHHHhc--C-cEEEecCCC
Confidence 223333455555443222 2 367788874
No 260
>PF05729 NACHT: NACHT domain
Probab=98.51 E-value=6.7e-07 Score=81.15 Aligned_cols=140 Identities=18% Similarity=0.277 Sum_probs=78.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCC--------C-eEEEeCCCCCCCch--hHH-----------HHHHHHHHHHHhcCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGL--------D-YALMTGGDVAPLGP--QAV-----------TKIHQLFDWAKKSKR 327 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~--------~-~~~v~~~~~~~~~~--~~~-----------~~l~~lf~~a~~~~~ 327 (512)
-++|+|+||+|||++++.++..+.. + ++.+.+........ ... ......+.......+
T Consensus 2 ~l~I~G~~G~GKStll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (166)
T PF05729_consen 2 VLWISGEPGSGKSTLLRKLAQQLAEEEPPPSKFPYPFFFSLRDISDSNNSRSLADLLFDQLPESIAPIEELLQELLEKNK 81 (166)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHhcCcccccceEEEEEeehhhhhccccchHHHHHHHhhccchhhhHHHHHHHHHcCC
Confidence 4899999999999999999877621 1 22333333322110 011 111222223333455
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHcccc--ceeecCCCCHHHHH
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRID--EVLEFPLPGQEERF 405 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~--~~i~~~~p~~~er~ 405 (512)
..+|+||.+|.+...... .........+..++..- ...++.+|.|+.... ... +.+.+. ..+.+++.+.+++.
T Consensus 82 ~~llilDglDE~~~~~~~-~~~~~~~~~l~~l~~~~--~~~~~~liit~r~~~-~~~-~~~~~~~~~~~~l~~~~~~~~~ 156 (166)
T PF05729_consen 82 RVLLILDGLDELEEQDQS-QERQRLLDLLSQLLPQA--LPPGVKLIITSRPRA-FPD-LRRRLKQAQILELEPFSEEDIK 156 (166)
T ss_pred ceEEEEechHhcccchhh-hHHHHHHHHHHHHhhhc--cCCCCeEEEEEcCCh-HHH-HHHhcCCCcEEEECCCCHHHHH
Confidence 789999999998543221 00112233444444331 244566666664322 211 333332 56899999999999
Q ss_pred HHHHHHHHH
Q 010366 406 KLLKLYLDK 414 (512)
Q Consensus 406 ~Il~~~l~~ 414 (512)
++++.++..
T Consensus 157 ~~~~~~f~~ 165 (166)
T PF05729_consen 157 QYLRKYFSN 165 (166)
T ss_pred HHHHHHhhc
Confidence 999988753
No 261
>KOG0481 consensus DNA replication licensing factor, MCM5 component [Replication, recombination and repair]
Probab=98.47 E-value=2.2e-06 Score=88.59 Aligned_cols=249 Identities=15% Similarity=0.116 Sum_probs=135.0
Q ss_pred CccccChHHHHHHHHHHHHhhchhhc-C---CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAH-N---APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK 314 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~-~---~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~ 314 (512)
-.+.|++++++++.-++-.-.....+ + +.--+|||.|.|||.|+-|.+.+-.-....++. + +.-++..+-+..-
T Consensus 331 PSIfG~~DiKkAiaClLFgGsrK~LpDg~~lRGDINVLLLGDPgtAKSQlLKFvEkvsPIaVYT-S-GKGSSAAGLTASV 408 (729)
T KOG0481|consen 331 PSIFGHEDIKKAIACLLFGGSRKRLPDGVTLRGDINVLLLGDPGTAKSQLLKFVEKVSPIAVYT-S-GKGSSAAGLTASV 408 (729)
T ss_pred chhcCchhHHHHHHHHhhcCccccCCCcceeccceeEEEecCCchhHHHHHHHHHhcCceEEEe-c-CCCcccccceeeE
Confidence 45778888888886554321110000 0 111279999999999999999886553322221 1 1110000000000
Q ss_pred HHH----HH---HHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH---------c-CCCCCCEEEEEeeC
Q 010366 315 IHQ----LF---DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR---------T-GDQSKDIVLALATN 377 (512)
Q Consensus 315 l~~----lf---~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~---------~-~~~~~~viiI~ttN 377 (512)
++. -| .-|.-...++|++|||||++ .+..+..+...+.+ + -..+..+-|++++|
T Consensus 409 ~RD~~tReFylEGGAMVLADgGVvCIDEFDKM---------re~DRVAIHEAMEQQTISIAKAGITT~LNSRtSVLAAAN 479 (729)
T KOG0481|consen 409 IRDPSTREFYLEGGAMVLADGGVVCIDEFDKM---------REDDRVAIHEAMEQQTISIAKAGITTTLNSRTSVLAAAN 479 (729)
T ss_pred EecCCcceEEEecceEEEecCCEEEeehhhcc---------CchhhhHHHHHHHhhhHHHhhhcceeeecchhhhhhhcC
Confidence 000 00 00111234789999999996 22333333333221 0 01344566777777
Q ss_pred CCC-------------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhh--hCCC-----CCcch-hhhhhhh--
Q 010366 378 RPG-------------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQ--AGSR-----KPGLV-HRLFKSE-- 434 (512)
Q Consensus 378 ~~~-------------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~--~~~~-----~~~~~-~~~~~~~-- 434 (512)
.+. .+-|.+++|||.++.+..--.+++-..+..+.-..... +... .+..+ -..++..
T Consensus 480 pvfGRyDd~Kt~~dNIDf~~TILSRFDmIFIVKD~h~~~~D~~lAkHVI~vH~~~~n~~~~~~~~~~~ei~~~~~KryI~ 559 (729)
T KOG0481|consen 480 PVFGRYDDTKTGEDNIDFMPTILSRFDMIFIVKDEHDEERDITLAKHVINVHVSKANAQTDSQEENEGEIPIEKLKRYIQ 559 (729)
T ss_pred CccccccccCCcccccchhhhHhhhccEEEEEeccCcchhhhHHHHHhhhhhccccccccCccccCCCcccHHHHHHHHH
Confidence 631 34589999999888776655554444333333222111 0000 11111 1112211
Q ss_pred hhhh-hhcCCCHHHHHHHHHHc-------------------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 435 QQKI-EIKGLTDDILMEAAAKT-------------------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 435 ~~~~-~~~~~~~~~l~~la~~t-------------------~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
.-+. +.+.+++++-+.|..+. -..+.|+++++++...+.+...-....|++|+++|+.-+
T Consensus 560 YcR~kc~PrLs~~AaekL~~~yV~~R~~~~q~e~~s~~rssIPITVRQLEAIiRI~ESLAKm~Ls~~ate~hV~EA~RLF 639 (729)
T KOG0481|consen 560 YCRLKCGPRLSAEAAEKLSSRYVTMRKGVRQHEQDSDKRSSIPITVRQLEAIIRIAESLAKMELSPFATEAHVEEALRLF 639 (729)
T ss_pred HHHhccCCCCCHHHHHHHHHHHhHHHHHHHHhhhcccccCCCceeHHHHHHHHHHHHHHHhhcCCccccHHHHHHHHHHH
Confidence 1122 22567777777666552 134669999999999998888888999999999999887
Q ss_pred HHHH
Q 010366 495 VAEH 498 (512)
Q Consensus 495 ~~~~ 498 (512)
....
T Consensus 640 ~vST 643 (729)
T KOG0481|consen 640 QVST 643 (729)
T ss_pred hHhh
Confidence 6554
No 262
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.47 E-value=2.7e-06 Score=97.29 Aligned_cols=132 Identities=22% Similarity=0.254 Sum_probs=95.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC------------CchhHHHHHHHHHHHHHhcCCCcEEEEccch
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEAD 337 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~------------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid 337 (512)
++||-|.||+|||+++.++|+..|..++.+|.++-.. .+++. .-...-|-.| .+.+..|+|||+.
T Consensus 1545 pilLEGsPGVGKTSlItaLAr~tG~kliRINLSeQTdL~DLfGsd~Pve~~Gef-~w~dapfL~a--mr~G~WVlLDEiN 1621 (4600)
T COG5271 1545 PILLEGSPGVGKTSLITALARKTGKKLIRINLSEQTDLCDLFGSDLPVEEGGEF-RWMDAPFLHA--MRDGGWVLLDEIN 1621 (4600)
T ss_pred ceeecCCCCccHHHHHHHHHHHhcCceEEeeccccchHHHHhCCCCCcccCcee-EecccHHHHH--hhcCCEEEeehhh
Confidence 5999999999999999999999999999999665321 11111 0011112222 2447899999998
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHcC-----------CCCCCEEEEEeeCCC------CCCCHHHHccccceeecCCCC
Q 010366 338 AFLCERNKTYMSEAQRSALNALLFRTG-----------DQSKDIVLALATNRP------GDLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~l~~ll~~~~-----------~~~~~viiI~ttN~~------~~l~~al~~R~~~~i~~~~p~ 400 (512)
-. +...-.-||..|..-. +...++.|++|-|.. ..++..|++|| .+|+++.++
T Consensus 1622 La---------SQSVlEGLNacLDhR~eayIPEld~~f~~HpnfrVFAaqNPq~qggGRKgLPkSF~nRF-svV~~d~lt 1691 (4600)
T COG5271 1622 LA---------SQSVLEGLNACLDHRREAYIPELDKTFDVHPNFRVFAAQNPQDQGGGRKGLPKSFLNRF-SVVKMDGLT 1691 (4600)
T ss_pred hh---------HHHHHHHHHHHHhhccccccccccceeeccCCeeeeeecCchhcCCCcccCCHHHhhhh-heEEecccc
Confidence 73 3345556777776432 134578888888764 36899999999 899999999
Q ss_pred HHHHHHHHHHHHHH
Q 010366 401 QEERFKLLKLYLDK 414 (512)
Q Consensus 401 ~~er~~Il~~~l~~ 414 (512)
.++...|....+..
T Consensus 1692 ~dDi~~Ia~~~yp~ 1705 (4600)
T COG5271 1692 TDDITHIANKMYPQ 1705 (4600)
T ss_pred cchHHHHHHhhCCc
Confidence 99999998877654
No 263
>COG5271 MDN1 AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=98.43 E-value=2.1e-06 Score=98.12 Aligned_cols=157 Identities=24% Similarity=0.277 Sum_probs=110.3
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC---Cchh-----
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP---LGPQ----- 310 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~---~~~~----- 310 (512)
+..|..|-+.+.+.++.++.. ..+.| +||-||+.+|||+.+..+|+..|..|+.+|..+... +.+.
T Consensus 865 ~hyIiTPfVqkn~ln~~Ra~s---~~~fP---~LiQGpTSSGKTSMI~yla~~tghkfVRINNHEHTdlqeYiGTyvTdd 938 (4600)
T COG5271 865 EHYIITPFVQKNYLNTMRAAS---LSNFP---LLIQGPTSSGKTSMILYLARETGHKFVRINNHEHTDLQEYIGTYVTDD 938 (4600)
T ss_pred ceeEecHHHHHHHHHHHHHHh---hcCCc---EEEecCCCCCcchHHHHHHHHhCccEEEecCcccchHHHHhhceeecC
Confidence 456777777776655554432 23344 999999999999999999999999999999765422 1110
Q ss_pred --HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC-----------CCCCCEEEEEeeC
Q 010366 311 --AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-----------DQSKDIVLALATN 377 (512)
Q Consensus 311 --~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-----------~~~~~viiI~ttN 377 (512)
+...-..++-.|.+ ++..|+|||..-. ....-.+||.||..-. -+..++++++|-|
T Consensus 939 ~G~lsFkEGvLVeAlR--~GyWIVLDELNLA---------pTDVLEaLNRLLDDNRelfIPETqevV~PHp~F~lFATQN 1007 (4600)
T COG5271 939 DGSLSFKEGVLVEALR--RGYWIVLDELNLA---------PTDVLEALNRLLDDNRELFIPETQEVVVPHPNFRLFATQN 1007 (4600)
T ss_pred CCceeeehhHHHHHHh--cCcEEEeeccccC---------cHHHHHHHHHhhccccceecCCcceeeccCCCeeEEeecC
Confidence 01111223333443 3678999999863 4466778888885421 1456788889989
Q ss_pred CCC------CCCHHHHccccceeecCCCCHHHHHHHHHHHHH
Q 010366 378 RPG------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLD 413 (512)
Q Consensus 378 ~~~------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~ 413 (512)
.|. .+..+|++|| ..++|..-+.++...|+...+.
T Consensus 1008 ppg~YgGRK~LSrAFRNRF-lE~hFddipedEle~ILh~rc~ 1048 (4600)
T COG5271 1008 PPGGYGGRKGLSRAFRNRF-LEMHFDDIPEDELEEILHGRCE 1048 (4600)
T ss_pred CCccccchHHHHHHHHhhh-HhhhcccCcHHHHHHHHhccCc
Confidence 875 5788999999 8889988889999998876653
No 264
>COG4650 RtcR Sigma54-dependent transcription regulator containing an AAA-type ATPase domain and a DNA-binding domain [Transcription / Signal transduction mechanisms]
Probab=98.43 E-value=7.7e-07 Score=86.13 Aligned_cols=206 Identities=19% Similarity=0.260 Sum_probs=113.2
Q ss_pred ceEEecCCCCchHHHHHHHH------HHhCCCeEEEeCCCCCCCchhH--HHHHHHHHHHHH-------hcCCCcEEEEc
Q 010366 270 NMLFYGPPGTGKTMAARELA------RKSGLDYALMTGGDVAPLGPQA--VTKIHQLFDWAK-------KSKRGLLLFID 334 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA------~~l~~~~~~v~~~~~~~~~~~~--~~~l~~lf~~a~-------~~~~~~vl~lD 334 (512)
.+||.||+|.||+.+|+.+- +++..+|+.+||..+...+..+ ...+...|.-+. +...++++|||
T Consensus 210 p~ll~gptgagksflarriyelk~arhq~sg~fvevncatlrgd~amsalfghvkgaftga~~~r~gllrsadggmlfld 289 (531)
T COG4650 210 PILLNGPTGAGKSFLARRIYELKQARHQFSGAFVEVNCATLRGDTAMSALFGHVKGAFTGARESREGLLRSADGGMLFLD 289 (531)
T ss_pred CeEeecCCCcchhHHHHHHHHHHHHHHhcCCceEEEeeeeecCchHHHHHHhhhccccccchhhhhhhhccCCCceEehH
Confidence 39999999999999999983 3467899999998876532211 122223332222 23447899999
Q ss_pred cchhhhhhcccCCCCHHHHHHHHHHHHHc-----C---CCCCCEEEEEeeCC-------CCCCCHHHHccccceeecCCC
Q 010366 335 EADAFLCERNKTYMSEAQRSALNALLFRT-----G---DQSKDIVLALATNR-------PGDLDSAVADRIDEVLEFPLP 399 (512)
Q Consensus 335 Eid~l~~~~~~~~~~~~~~~~l~~ll~~~-----~---~~~~~viiI~ttN~-------~~~l~~al~~R~~~~i~~~~p 399 (512)
||..|.. ..+..+...+.+- + ....++.+|+-|-. ...+...+..|+ ....|..|
T Consensus 290 eigelga---------deqamllkaieekrf~pfgsdr~v~sdfqliagtvrdlrq~vaeg~fredl~ari-nlwtf~lp 359 (531)
T COG4650 290 EIGELGA---------DEQAMLLKAIEEKRFYPFGSDRQVSSDFQLIAGTVRDLRQLVAEGKFREDLYARI-NLWTFTLP 359 (531)
T ss_pred hhhhcCc---------cHHHHHHHHHHhhccCCCCCccccccchHHhhhhHHHHHHHHhccchHHHHHHhh-heeeeecc
Confidence 9998732 2233333333321 1 12234555554432 234556677788 77789999
Q ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH---cCCCcHHHHHHHHHHHHHHHhC
Q 010366 400 GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---TEGFSGREIAKLMASVQAAVYG 476 (512)
Q Consensus 400 ~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---t~g~s~~dI~~lv~~~~aa~~~ 476 (512)
...+|.+-++-.+.-......... ...+.++.-..-.+-.++.. ....+.+++.+-+..+...+
T Consensus 360 gl~qr~ediepnldyelerha~~~-----------g~~vrfntearra~l~fa~spqa~w~gnfrelsasvtrmatla-- 426 (531)
T COG4650 360 GLRQRQEDIEPNLDYELERHASLT-----------GDSVRFNTEARRAWLAFATSPQATWRGNFRELSASVTRMATLA-- 426 (531)
T ss_pred ccccCccccCCCccHHHHHHHHhh-----------CceeeeehHHHHHHHHhccCcchhhcccHHHHhHHHHHHHHHh--
Confidence 998888766544432221111000 01111110111112122211 12334567766665554444
Q ss_pred CCCCccCHHHHHHHHHHHHHHHH
Q 010366 477 SENCVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 477 ~~~~~it~e~~~~al~~~~~~~~ 499 (512)
+...||.+.++.-+......++
T Consensus 427 -d~grit~~~ve~ei~rlr~~w~ 448 (531)
T COG4650 427 -DSGRITLDVVEDEINRLRYNWQ 448 (531)
T ss_pred -cCCceeHHHHHHHHHHHHHHhh
Confidence 3357888888887766655554
No 265
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=98.39 E-value=6.4e-06 Score=82.18 Aligned_cols=165 Identities=19% Similarity=0.164 Sum_probs=86.4
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHH--hCCC---eEEEeCCCCCCC--------------------chhHHHHHHHHHH
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARK--SGLD---YALMTGGDVAPL--------------------GPQAVTKIHQLFD 320 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~--l~~~---~~~v~~~~~~~~--------------------~~~~~~~l~~lf~ 320 (512)
.+.+.+.|+|++|+|||++|..+++. .... ++.++.+..... ..........+..
T Consensus 17 ~~~~~v~I~G~~G~GKT~LA~~~~~~~~~~~~f~~v~wv~~~~~~~~~~~~~~i~~~l~~~~~~~~~~~~~~~~~~~l~~ 96 (287)
T PF00931_consen 17 NEVRVVAIVGMGGIGKTTLARQVARDLRIKNRFDGVIWVSLSKNPSLEQLLEQILRQLGEPDSSISDPKDIEELQDQLRE 96 (287)
T ss_dssp TSSEEEEEEESTTSSHHHHHHHHHCHHHHCCCCTEEEEEEEES-SCCHHHHHHHHHHHTCC-STSSCCSSHHHHHHHHHH
T ss_pred CCeEEEEEEcCCcCCcceeeeecccccccccccccccccccccccccccccccccccccccccccccccccccccccchh
Confidence 34457999999999999999999977 4332 233332221110 1112222233333
Q ss_pred HHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCC
Q 010366 321 WAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 321 ~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~ 400 (512)
... ..+++|+||+++.. . .+..+...+.....+..||.||....... ..... ...+.++.++
T Consensus 97 ~L~--~~~~LlVlDdv~~~-----------~---~~~~l~~~~~~~~~~~kilvTTR~~~v~~-~~~~~-~~~~~l~~L~ 158 (287)
T PF00931_consen 97 LLK--DKRCLLVLDDVWDE-----------E---DLEELREPLPSFSSGSKILVTTRDRSVAG-SLGGT-DKVIELEPLS 158 (287)
T ss_dssp HHC--CTSEEEEEEEE-SH-----------H---HH-------HCHHSS-EEEEEESCGGGGT-THHSC-EEEEECSS--
T ss_pred hhc--cccceeeeeeeccc-----------c---ccccccccccccccccccccccccccccc-ccccc-cccccccccc
Confidence 322 23789999999873 1 22222222222233566777776533211 11111 4688999999
Q ss_pred HHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 010366 401 QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASV 470 (512)
Q Consensus 401 ~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~ 470 (512)
.++-..++.......... .....++....|+..+.| .|-.|..+...+
T Consensus 159 ~~ea~~L~~~~~~~~~~~---------------------~~~~~~~~~~~i~~~c~g-lPLal~~~a~~l 206 (287)
T PF00931_consen 159 EEEALELFKKRAGRKESE---------------------SPEDLEDLAKEIVEKCGG-LPLALKLIASYL 206 (287)
T ss_dssp HHHHHHHHHHHHTSHS-------------------------TTSCTHHHHHHHHTTT--HHHHHHHHHHH
T ss_pred cccccccccccccccccc---------------------cccccccccccccccccc-cccccccccccc
Confidence 999999998886442200 001223456788888866 566665555433
No 266
>PHA00729 NTP-binding motif containing protein
Probab=98.38 E-value=1e-06 Score=84.12 Aligned_cols=25 Identities=32% Similarity=0.456 Sum_probs=23.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+++|+|+||||||++|.+|+..++
T Consensus 18 ~nIlItG~pGvGKT~LA~aLa~~l~ 42 (226)
T PHA00729 18 VSAVIFGKQGSGKTTYALKVARDVF 42 (226)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3799999999999999999999876
No 267
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=98.38 E-value=1.1e-05 Score=95.71 Aligned_cols=152 Identities=20% Similarity=0.242 Sum_probs=87.3
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe---EEEeCCCCCC----Cc
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY---ALMTGGDVAP----LG 308 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~---~~v~~~~~~~----~~ 308 (512)
..++++||.+...+.+..++.. .....+.+-|+||+|+||||+|+++++.+...| +.++...+.. ..
T Consensus 181 ~~~~~~vG~~~~l~~l~~lL~l------~~~~~~vvgI~G~gGiGKTTLA~~l~~~l~~~F~g~vfv~~~~v~~~~~~~~ 254 (1153)
T PLN03210 181 NDFEDFVGIEDHIAKMSSLLHL------ESEEVRMVGIWGSSGIGKTTIARALFSRLSRQFQSSVFIDRAFISKSMEIYS 254 (1153)
T ss_pred cccccccchHHHHHHHHHHHcc------ccCceEEEEEEcCCCCchHHHHHHHHHHHhhcCCeEEEeeccccccchhhcc
Confidence 3478999999888888765521 122345799999999999999999988765432 2222110000 00
Q ss_pred ------hh-H----HHHHHHH-------------HHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 309 ------PQ-A----VTKIHQL-------------FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 309 ------~~-~----~~~l~~l-------------f~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
.. . ...+..+ ..... ..+..+|+|||++.. ..+..+.....
T Consensus 255 ~~~~~~~~~~~~l~~~~l~~il~~~~~~~~~~~~~~~~L-~~krvLLVLDdv~~~--------------~~l~~L~~~~~ 319 (1153)
T PLN03210 255 SANPDDYNMKLHLQRAFLSEILDKKDIKIYHLGAMEERL-KHRKVLIFIDDLDDQ--------------DVLDALAGQTQ 319 (1153)
T ss_pred cccccccchhHHHHHHHHHHHhCCCCcccCCHHHHHHHH-hCCeEEEEEeCCCCH--------------HHHHHHHhhCc
Confidence 00 0 0001111 11111 234578999999762 22333333232
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHH
Q 010366 365 DQSKDIVLALATNRPGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLD 413 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~ 413 (512)
....+..||.||... .+.. .++.++.++.|+.++..+++..++-
T Consensus 320 ~~~~GsrIIiTTrd~-----~vl~~~~~~~~~~v~~l~~~ea~~LF~~~Af 365 (1153)
T PLN03210 320 WFGSGSRIIVITKDK-----HFLRAHGIDHIYEVCLPSNELALEMFCRSAF 365 (1153)
T ss_pred cCCCCcEEEEEeCcH-----HHHHhcCCCeEEEecCCCHHHHHHHHHHHhc
Confidence 223345566676543 3332 3567889999999999888887653
No 268
>PF03969 AFG1_ATPase: AFG1-like ATPase; InterPro: IPR005654 ATPase family gene 1 (AFG1) ATPase is a 377 amino acid putative protein with an ATPase motif typical of the protein family including SEC18p PAS1, CDC48-VCP and TBP. AFG1 also has substantial homology to these proteins outside the ATPase domain []. This family of proteins contains a P-loop motif.; GO: 0005524 ATP binding
Probab=98.34 E-value=1.1e-06 Score=90.30 Aligned_cols=99 Identities=23% Similarity=0.296 Sum_probs=58.5
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC-eEEEeCCCCCCCchhHHHH----------HHHHHHHHHhcCCCcEEEE
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD-YALMTGGDVAPLGPQAVTK----------IHQLFDWAKKSKRGLLLFI 333 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~-~~~v~~~~~~~~~~~~~~~----------l~~lf~~a~~~~~~~vl~l 333 (512)
..+++|++||||+|+|||+|.-.+...+... -..+- +-....+.... +..+.+... ....+|+|
T Consensus 59 ~~~~~GlYl~G~vG~GKT~Lmd~f~~~lp~~~k~R~H---Fh~Fm~~vh~~l~~~~~~~~~l~~va~~l~--~~~~lLcf 133 (362)
T PF03969_consen 59 PPPPKGLYLWGPVGRGKTMLMDLFYDSLPIKRKRRVH---FHEFMLDVHSRLHQLRGQDDPLPQVADELA--KESRLLCF 133 (362)
T ss_pred CCCCceEEEECCCCCchhHHHHHHHHhCCcccccccc---ccHHHHHHHHHHHHHhCCCccHHHHHHHHH--hcCCEEEE
Confidence 4567899999999999999999998876531 00000 00001111111 111222221 12349999
Q ss_pred ccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 334 DEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 334 DEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
||+..- ..+....+..|+..+ ...++++|+|||.+
T Consensus 134 DEF~V~---------DiaDAmil~rLf~~l--~~~gvvlVaTSN~~ 168 (362)
T PF03969_consen 134 DEFQVT---------DIADAMILKRLFEAL--FKRGVVLVATSNRP 168 (362)
T ss_pred eeeecc---------chhHHHHHHHHHHHH--HHCCCEEEecCCCC
Confidence 999862 224445566666665 45689999999983
No 269
>KOG0482 consensus DNA replication licensing factor, MCM7 component [Replication, recombination and repair]
Probab=98.28 E-value=4.1e-06 Score=86.49 Aligned_cols=241 Identities=15% Similarity=0.141 Sum_probs=130.5
Q ss_pred CccccChHHHHHHHHHHHH-hhchhhcCCCC---cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHH
Q 010366 239 GDVILHPSLQKRIRQLSGA-TANTKAHNAPF---RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTK 314 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~-~~~~~~~~~p~---~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~ 314 (512)
-.+.|++++++.+.-++-- .......|... -+++|.|.||+.||-|.+.+.+-.....+...- .-+..|-.. .-
T Consensus 342 PEIyGheDVKKaLLLlLVGgvd~~~~dGMKIRGdINicLmGDPGVAKSQLLkyi~rlapRgvYTTGr-GSSGVGLTA-AV 419 (721)
T KOG0482|consen 342 PEIYGHEDVKKALLLLLVGGVDKSPGDGMKIRGDINICLMGDPGVAKSQLLKYISRLAPRGVYTTGR-GSSGVGLTA-AV 419 (721)
T ss_pred hhhccchHHHHHHHHHhhCCCCCCCCCCceeecceeEEecCCCchhHHHHHHHHHhcCcccceecCC-CCCccccch-hh
Confidence 3567888888877443321 11111122222 279999999999999999998765444333221 111111000 00
Q ss_pred HH-HHH------HHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc----------CCCCCCEEEEEeeC
Q 010366 315 IH-QLF------DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----------GDQSKDIVLALATN 377 (512)
Q Consensus 315 l~-~lf------~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----------~~~~~~viiI~ttN 377 (512)
++ .+. .-|.-...++|-+|||||++ .+..+..+...+.+- -..+..+.|++++|
T Consensus 420 mkDpvTgEM~LEGGALVLAD~GICCIDEfDKM---------~e~DRtAIHEVMEQQTISIaKAGI~TtLNAR~sILaAAN 490 (721)
T KOG0482|consen 420 MKDPVTGEMVLEGGALVLADGGICCIDEFDKM---------DESDRTAIHEVMEQQTISIAKAGINTTLNARTSILAAAN 490 (721)
T ss_pred hcCCCCCeeEeccceEEEccCceEeehhhhhh---------hhhhhHHHHHHHHhhhhhhhhhccccchhhhHHhhhhcC
Confidence 00 000 00111223678899999997 334444444444331 11234567778888
Q ss_pred CCC-------------CCCHHHHcccccee-ecCCCCHHHHHHHHHHHHHHHhhhhCCCCC--------cchhhhhhhhh
Q 010366 378 RPG-------------DLDSAVADRIDEVL-EFPLPGQEERFKLLKLYLDKYIAQAGSRKP--------GLVHRLFKSEQ 435 (512)
Q Consensus 378 ~~~-------------~l~~al~~R~~~~i-~~~~p~~~er~~Il~~~l~~~~~~~~~~~~--------~~~~~~~~~~~ 435 (512)
... .|+++++||||... ..+.|+.+.=..+.++...-. .+....+ ..+..++....
T Consensus 491 PayGRYnprrs~e~NI~LPaALLSRFDll~Li~D~pdrd~D~~LA~HiTyVH--~H~~qp~~~fepl~~~~mR~yI~~ak 568 (721)
T KOG0482|consen 491 PAYGRYNPRRSPEQNINLPAALLSRFDLLWLIQDRPDRDNDLRLAQHITYVH--QHEEQPPLDFEPLDPNLMRRYISLAK 568 (721)
T ss_pred ccccccCcccChhHhcCCcHHHHHhhhhhhhhccCCcccchHHHHHHhHhhh--ccCCCCCccCCCCCHHHHHHHHHHHh
Confidence 632 57899999998665 457777665555554433211 1111111 11111111111
Q ss_pred hhhhhcCCCHHHHHHHHHHc------------C-CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 436 QKIEIKGLTDDILMEAAAKT------------E-GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 436 ~~~~~~~~~~~~l~~la~~t------------~-g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
. .-+.++++.-++++..+ . --|+|-|-.+++...+.+.-+-...+..+|+++|+.-.
T Consensus 569 ~--~~P~vp~~l~dyi~~AYv~~Rrea~~~~~~t~ttpRtLL~IlRls~AlarLRls~~V~~~DV~EALRLm 638 (721)
T KOG0482|consen 569 R--KNPVVPEALADYITGAYVELRREARSSKDFTYTTPRTLLGILRLSTALARLRLSDSVEEDDVNEALRLM 638 (721)
T ss_pred h--cCCCCCHHHHHHHHHHHHHHHHHhhccCCCcccCHHHHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 1 11335555555554331 1 23788898898888887777777899999999999754
No 270
>PRK06581 DNA polymerase III subunit delta'; Validated
Probab=98.26 E-value=3.1e-05 Score=74.03 Aligned_cols=134 Identities=16% Similarity=0.119 Sum_probs=97.6
Q ss_pred CcceEEecCCC-CchHHHHHHHHHHhCC---------CeEEEeCCCCC--CCchhHHHHHHHHHHHHHh---cCCCcEEE
Q 010366 268 FRNMLFYGPPG-TGKTMAARELARKSGL---------DYALMTGGDVA--PLGPQAVTKIHQLFDWAKK---SKRGLLLF 332 (512)
Q Consensus 268 ~~~vLL~GppG-tGKT~lA~alA~~l~~---------~~~~v~~~~~~--~~~~~~~~~l~~lf~~a~~---~~~~~vl~ 332 (512)
....||.|..+ +||..++..++..+.+ ++..+....-. ....-....++.+...+.. ..++-|++
T Consensus 15 shAYLfeG~n~~~~~~~~~~f~~~~l~~~~i~~~~HPD~~~I~pe~~~~~~~~~I~IdqIReL~~~l~~~p~~g~~KViI 94 (263)
T PRK06581 15 YNSWLIEAENIEQALKDLEKFIYIKLFKNSIPLENNPDYHFIARETSATSNAKNISIEQIRKLQDFLSKTSAISGYKVAI 94 (263)
T ss_pred hheeeEeCCChhhHHHHHHHHHHHHHhccCcccCCCCCEEEEeccccccccCCcccHHHHHHHHHHHhhCcccCCcEEEE
Confidence 34799999998 9999999988877632 23334322100 0011134455555555443 23456999
Q ss_pred EccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHH
Q 010366 333 IDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 333 lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l 412 (512)
|+++|.+ .....|.+|..+++++.++++|++|+.+..+.|.++||| ..+.|+.|+...-.+++...+
T Consensus 95 I~~ae~m------------t~~AANALLKtLEEPP~~t~fILit~~~~~LLpTIrSRC-q~i~~~~p~~~~~~e~~~~~~ 161 (263)
T PRK06581 95 IYSAELM------------NLNAANSCLKILEDAPKNSYIFLITSRAASIISTIRSRC-FKINVRSSILHAYNELYSQFI 161 (263)
T ss_pred EechHHh------------CHHHHHHHHHhhcCCCCCeEEEEEeCChhhCchhHhhce-EEEeCCCCCHHHHHHHHHHhc
Confidence 9999996 356778999999999999999999999999999999999 999999999977777766655
Q ss_pred HH
Q 010366 413 DK 414 (512)
Q Consensus 413 ~~ 414 (512)
..
T Consensus 162 ~p 163 (263)
T PRK06581 162 QP 163 (263)
T ss_pred cc
Confidence 43
No 271
>KOG0477 consensus DNA replication licensing factor, MCM2 component [Replication, recombination and repair]
Probab=98.23 E-value=7.5e-06 Score=86.46 Aligned_cols=216 Identities=17% Similarity=0.174 Sum_probs=105.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC---------CC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhh
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV---------AP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAF 339 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~---------~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l 339 (512)
++||+|.|||||+-+.+.+++.....++...-+.- -. ...++. +-.-|.-....+|-+|||||++
T Consensus 484 nvLL~GDPGTaKSQFLKY~eK~s~RAV~tTGqGASavGLTa~v~KdPvtrEWT-----LEaGALVLADkGvClIDEFDKM 558 (854)
T KOG0477|consen 484 NVLLLGDPGTAKSQFLKYAEKTSPRAVFTTGQGASAVGLTAYVRKDPVTREWT-----LEAGALVLADKGVCLIDEFDKM 558 (854)
T ss_pred eEEEecCCCccHHHHHHHHHhcCcceeEeccCCccccceeEEEeeCCccceee-----eccCeEEEccCceEEeehhhhh
Confidence 79999999999999999998876544443221110 00 011100 0000111223578899999997
Q ss_pred hhhcccCCCCHHH--------HHHHHHHHHHcCCCCCCEEEEEeeCCCC-------------CCCHHHHccccceeecC-
Q 010366 340 LCERNKTYMSEAQ--------RSALNALLFRTGDQSKDIVLALATNRPG-------------DLDSAVADRIDEVLEFP- 397 (512)
Q Consensus 340 ~~~~~~~~~~~~~--------~~~l~~ll~~~~~~~~~viiI~ttN~~~-------------~l~~al~~R~~~~i~~~- 397 (512)
-.....+. ++++ +.-+..-| ...+.+|+|+|... .+...++||||....+.
T Consensus 559 ndqDRtSI-HEAMEQQSISISKAGIVtsL------qArctvIAAanPigGRY~~s~tFaqNV~ltePIlSRFDiLcVvkD 631 (854)
T KOG0477|consen 559 NDQDRTSI-HEAMEQQSISISKAGIVTSL------QARCTVIAAANPIGGRYNPSLTFAQNVDLTEPILSRFDILCVVKD 631 (854)
T ss_pred cccccchH-HHHHHhcchhhhhhhHHHHH------HhhhhhheecCCCCCccCCccchhhccccccchhhhcceeeeeec
Confidence 33221111 1111 11122222 34577899988721 45678999997554332
Q ss_pred --CCCHHHHH--HHHHHHHHHHhhh---hCCCCCc-------chhhhhhhh----hhhhhhcCCCHHHHHHHHHH-----
Q 010366 398 --LPGQEERF--KLLKLYLDKYIAQ---AGSRKPG-------LVHRLFKSE----QQKIEIKGLTDDILMEAAAK----- 454 (512)
Q Consensus 398 --~p~~~er~--~Il~~~l~~~~~~---~~~~~~~-------~~~~~~~~~----~~~~~~~~~~~~~l~~la~~----- 454 (512)
.|-.+++. -++..+....... .+...++ ....++.+. ..++. +.+.+-+.+.++..
T Consensus 632 ~vd~~~De~lA~fVV~Sh~r~hp~~~~~~~~~e~~~~~~v~~ipq~lLrkyI~yar~~v~-PkL~q~d~~K~s~vya~lR 710 (854)
T KOG0477|consen 632 TVDPVQDEKLAKFVVGSHVRHHPSNKEEDGLEEPQMPARVEPIPQELLRKYIIYAREKVR-PKLNQMDMDKISSVYADLR 710 (854)
T ss_pred ccCchhHHHHHHHHHHhHhhcCCcccccCcccccccccccccChHHHHHHHHHHHHHhcc-cccccccHHHHHHHHHHHH
Confidence 12222222 2344444332211 0000000 011111111 11111 11222222222222
Q ss_pred --c--CC---CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 455 --T--EG---FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 455 --t--~g---~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
+ .| .+.+-|..++....+-+...-...++.+|+..|+.-.+..+
T Consensus 711 kES~~tGs~piTvRHieS~ir~seAhArm~Lr~~V~~~d~~~AI~v~ldSf 761 (854)
T KOG0477|consen 711 KESMATGSLPITVRHIESMIRMSEAHARMHLREYVTEEDVDMAIRVMLDSF 761 (854)
T ss_pred hhccccCCchhhHHHHHHHHHHHHHHHHHHHHhhccHhHHHHHHHHHHHHH
Confidence 1 12 35588888886666655555567899999999987766554
No 272
>COG5245 DYN1 Dynein, heavy chain [Cytoskeleton]
Probab=98.20 E-value=2.6e-05 Score=89.05 Aligned_cols=200 Identities=16% Similarity=0.144 Sum_probs=110.5
Q ss_pred cceEEecCCCCchHHH-HHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHh------cC----CCcEEEEccch
Q 010366 269 RNMLFYGPPGTGKTMA-ARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKK------SK----RGLLLFIDEAD 337 (512)
Q Consensus 269 ~~vLL~GppGtGKT~l-A~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~------~~----~~~vl~lDEid 337 (512)
++++++||||+|||++ .-+|-+.+-..++++|.+.-... ......+..-...... .+ ...|||.|||+
T Consensus 1495 R~~i~cGppGSgK~mlM~~sLrs~~~~ev~~~Nfs~~t~T-~s~ls~Ler~t~yy~~tg~~~l~PK~~vK~lVLFcDeIn 1573 (3164)
T COG5245 1495 RSYIYCGPPGSGKEMLMCPSLRSELITEVKYFNFSTCTMT-PSKLSVLERETEYYPNTGVVRLYPKPVVKDLVLFCDEIN 1573 (3164)
T ss_pred ceEEEECCCCCccchhcchhhhhhhheeeeEEeeccccCC-HHHHHHHHhhceeeccCCeEEEccCcchhheEEEeeccC
Confidence 5899999999999996 66777777788888876543211 1111111111111100 01 12489999999
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHcCC---------CCCCEEEEEeeCCCCCCC-----HHHHccccceeecCCCCHHH
Q 010366 338 AFLCERNKTYMSEAQRSALNALLFRTGD---------QSKDIVLALATNRPGDLD-----SAVADRIDEVLEFPLPGQEE 403 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~l~~ll~~~~~---------~~~~viiI~ttN~~~~l~-----~al~~R~~~~i~~~~p~~~e 403 (512)
| +...... ++...-.+..++..-+. .-.++.+.++||.+.... ..++++- ..+++.+|....
T Consensus 1574 -L-p~~~~y~-~~~vI~FlR~l~e~QGfw~s~~~~wvTI~~i~l~Gacnp~td~gRv~~~eRf~r~~-v~vf~~ype~~S 1649 (3164)
T COG5245 1574 -L-PYGFEYY-PPTVIVFLRPLVERQGFWSSIAVSWVTICGIILYGACNPGTDEGRVKYYERFIRKP-VFVFCCYPELAS 1649 (3164)
T ss_pred -C-ccccccC-CCceEEeeHHHHHhcccccchhhhHhhhcceEEEccCCCCCCcccCccHHHHhcCc-eEEEecCcchhh
Confidence 3 3322221 11222223344433211 224688889999976543 4555554 778899999999
Q ss_pred HHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCC
Q 010366 404 RFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGS 477 (512)
Q Consensus 404 r~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~ 477 (512)
...|...++..-.... +++...-...-...+.+.....+..........||+|||+...++++..++...
T Consensus 1650 L~~Iyea~l~~s~l~~----~ef~~~se~~~~aSv~ly~~~k~~~k~~lq~~y~y~pReLtR~lr~i~~yaeT~ 1719 (3164)
T COG5245 1650 LRNIYEAVLMGSYLCF----DEFNRLSEETMSASVELYLSSKDKTKFFLQMNYGYKPRELTRSLRAIFGYAETR 1719 (3164)
T ss_pred HHHHHHHHHHHHHHhh----HHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccChHHHHHHHHHHHhHHhcC
Confidence 9999998876543221 000000001111122222222222333333346899999999999888877654
No 273
>PF00910 RNA_helicase: RNA helicase; InterPro: IPR000605 Helicases have been classified in 5 superfamilies (SF1-SF5). All of the proteins bind ATP and, consequently, all of them carry the classical Walker A (phosphate-binding loop or P-loop) and Walker B (Mg2+-binding aspartic acid) motifs. Superfamily 3 consists of helicases encoded mainly by small DNA viruses and some large nucleocytoplasmic DNA viruses [, ]. Small viruses are very dependent on the host-cell machinery to replicate. SF3 helicase in small viruses is associated with an origin-binding domain. By pairing a domain that recognises the ori with a helicase, the virus can bypass the host-cell-based regulation pathway and initiate its own replication. The protein binds to the viral ori leading to origin unwinding. Cellular replication proteins are then recruited to the ori and the viral DNA is replicated. In SF3 helicases the Walker A and Walker B motifs are separated by spacers of rather uniform, and relatively short, length. In addition to the A and B motifs this family is characterised by a third motif (C) which resides between the B motif and the C terminus of the conserved region. This motif consists of an Asn residue preceded by a run of hydrophobic residues []. Several structures of SF3 helicases have been solved []. They all possess the same core alpha/beta fold, consisting of a five-stranded parallel beta sheet flanked on both sides by several alpha helices. In contrast to SF1 and SF2 helicases, which have RecA-like core folds, the strand connectivity within the alpha/beta core domain is that of AAA+ proteins []. The SF3 helicase proteins assemble into a hexameric ring. Some proteins known to contain an SF3 helicase domain are listed below: Polyomavirus large T antigen. It initiates DNA unwinding and replication via interactions with the viral origin of replication. Papillomavirus E1 protein. An ATP-dependent DNA helicase required for initiation of viral DNA replication. Parvovirus Rep/NS1 protein, which is also required for the initiation of viral replication. Poxviridae and other large DNA viruses D5 protein. Bacteriophage DNA primase/helicase protein. Bacterial prophage DNA primase/helicase protein. The entry represents the core alpha/beta fold of the SF3 helicase domain found predominantly in DNA viruses.; GO: 0003723 RNA binding, 0003724 RNA helicase activity
Probab=98.20 E-value=1.9e-06 Score=73.11 Aligned_cols=23 Identities=48% Similarity=0.865 Sum_probs=20.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhC
Q 010366 271 MLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~ 293 (512)
|+|+||||+|||++|+.||..+.
T Consensus 1 I~i~G~~G~GKS~l~~~l~~~l~ 23 (107)
T PF00910_consen 1 IWIYGPPGIGKSTLAKELAKDLL 23 (107)
T ss_pred CEEECCCCCCHHHHHHHHHHHHH
Confidence 57999999999999999988764
No 274
>KOG1968 consensus Replication factor C, subunit RFC1 (large subunit) [Replication, recombination and repair]
Probab=98.16 E-value=4.7e-06 Score=93.78 Aligned_cols=163 Identities=22% Similarity=0.269 Sum_probs=108.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHH---------HHHHHHH---HHHH-hcCCCcEEEEccch
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV---------TKIHQLF---DWAK-KSKRGLLLFIDEAD 337 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~---------~~l~~lf---~~a~-~~~~~~vl~lDEid 337 (512)
++++||||+|||+.+...|..+|..++.+|.++... ..... ..+...+ .... ......||++||+|
T Consensus 360 ~l~~G~pGigKT~~~h~~~k~~g~~v~E~Nas~~RS-k~~l~~~~~~~~~s~si~~~~~~~~~~~~~~~~~~vil~devD 438 (871)
T KOG1968|consen 360 LLLSGPPGIGKTTAAHKAAKELGFKVVEKNASDVRS-KKELLNKLGNATSSHSIKGSKKKKGNRQSLNSDHFLILMDEVD 438 (871)
T ss_pred HHhcCCCCCCchhhHhhhhhhcccceeecCcccccc-ccHHHhhhhccccccchhhhhcccccccccccceeEEEEeccc
Confidence 699999999999999999999999999999887642 11111 1111222 0000 11223499999999
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhh
Q 010366 338 AFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIA 417 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~ 417 (512)
-+.. ..+..+..+..... ....-+|+++|.........+.+....++|+.|+...+..-+-..+.....
T Consensus 439 ~~~~---------~dRg~v~~l~~l~~--ks~~Piv~~cndr~~p~sr~~~~~~~~l~f~kP~~~~i~~ri~si~~se~~ 507 (871)
T KOG1968|consen 439 GMFG---------EDRGGVSKLSSLCK--KSSRPLVCTCNDRNLPKSRALSRACSDLRFSKPSSELIRSRIMSICKSEGI 507 (871)
T ss_pred cccc---------hhhhhHHHHHHHHH--hccCCeEEEecCCCCccccchhhhcceeeecCCcHHHHHhhhhhhhcccce
Confidence 8754 22333333333332 344568899999887777667776688999999999887766666544222
Q ss_pred hhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 010366 418 QAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAA 473 (512)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa 473 (512)
. +++..++.+...+ +.||++.+..++..
T Consensus 508 k------------------------i~~~~l~~~s~~~----~~DiR~~i~~lq~~ 535 (871)
T KOG1968|consen 508 K------------------------ISDDVLEEISKLS----GGDIRQIIMQLQFW 535 (871)
T ss_pred e------------------------cCcHHHHHHHHhc----ccCHHHHHHHHhhh
Confidence 1 7888999999887 44777766544444
No 275
>PF13191 AAA_16: AAA ATPase domain; PDB: 2V1U_A.
Probab=98.15 E-value=2.1e-06 Score=79.64 Aligned_cols=58 Identities=26% Similarity=0.331 Sum_probs=33.5
Q ss_pred cccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---eEEEeCCC
Q 010366 241 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGD 303 (512)
Q Consensus 241 vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---~~~v~~~~ 303 (512)
++|.++..+.+..++. ......+++++|+||+|+|||++++.+...+..+ ++.+++..
T Consensus 2 fvgR~~e~~~l~~~l~-----~~~~~~~~~~ll~G~~G~GKT~ll~~~~~~~~~~~~~~~~~~~~~ 62 (185)
T PF13191_consen 2 FVGREEEIERLRDLLD-----AAQSGSPRNLLLTGESGSGKTSLLRALLDRLAERGGYVISINCDD 62 (185)
T ss_dssp -TT-HHHHHHHHHTTG-----GTSS-----EEE-B-TTSSHHHHHHHHHHHHHHHT--EEEEEEET
T ss_pred CCCHHHHHHHHHHHHH-----HHHcCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEEEec
Confidence 5777777777766553 1222233689999999999999999887665322 55555433
No 276
>KOG2228 consensus Origin recognition complex, subunit 4 [Replication, recombination and repair]
Probab=98.15 E-value=2.8e-05 Score=77.06 Aligned_cols=162 Identities=20% Similarity=0.251 Sum_probs=97.3
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHH-HHH--HhCCCeEEEe--CCCCCC-------
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARE-LAR--KSGLDYALMT--GGDVAP------- 306 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~a-lA~--~l~~~~~~v~--~~~~~~------- 306 (512)
-.+.|..+-.+.+..++....-.... .++++.||.|+|||++... ++. +.|-.++.+. +.-..+
T Consensus 24 ~~l~g~~~~~~~l~~~lkqt~~~gEs----nsviiigprgsgkT~li~~~Ls~~q~~~E~~l~v~Lng~~~~dk~al~~I 99 (408)
T KOG2228|consen 24 INLFGVQDEQKHLSELLKQTILHGES----NSVIIIGPRGSGKTILIDTRLSDIQENGENFLLVRLNGELQTDKIALKGI 99 (408)
T ss_pred cceeehHHHHHHHHHHHHHHHHhcCC----CceEEEccCCCCceEeeHHHHhhHHhcCCeEEEEEECccchhhHHHHHHH
Confidence 55677777777776666544433322 4799999999999987544 444 5666665443 322110
Q ss_pred -------------CchhHHHHHHHHHHHHHh---cCC-CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCC
Q 010366 307 -------------LGPQAVTKIHQLFDWAKK---SKR-GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD 369 (512)
Q Consensus 307 -------------~~~~~~~~l~~lf~~a~~---~~~-~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 369 (512)
..+...+.+..++...+. ... +.|.++||||-+++. ..+..+..+++.......+
T Consensus 100 ~rql~~e~~~~~k~~gsfte~l~~lL~~L~~~~~~t~~~ViFIldEfDlf~~h--------~rQtllYnlfDisqs~r~P 171 (408)
T KOG2228|consen 100 TRQLALELNRIVKSFGSFTENLSKLLEALKKGDETTSGKVIFILDEFDLFAPH--------SRQTLLYNLFDISQSARAP 171 (408)
T ss_pred HHHHHHHHhhhheeecccchhHHHHHHHHhcCCCCCCceEEEEeehhhccccc--------hhhHHHHHHHHHHhhcCCC
Confidence 011111222333332221 111 235567899987432 3344566666666666778
Q ss_pred EEEEEeeCCC---CCCCHHHHccccce-eec-CCCCHHHHHHHHHHHH
Q 010366 370 IVLALATNRP---GDLDSAVADRIDEV-LEF-PLPGQEERFKLLKLYL 412 (512)
Q Consensus 370 viiI~ttN~~---~~l~~al~~R~~~~-i~~-~~p~~~er~~Il~~~l 412 (512)
+.||+.|... +.+...+.+||... |++ |..+..+...+++..+
T Consensus 172 iciig~Ttrld~lE~LEKRVKSRFshr~I~m~~~~~l~~yv~l~r~ll 219 (408)
T KOG2228|consen 172 ICIIGVTTRLDILELLEKRVKSRFSHRVIFMLPSLPLGDYVDLYRKLL 219 (408)
T ss_pred eEEEEeeccccHHHHHHHHHHhhcccceeeccCCCChHHHHHHHHHHh
Confidence 8888877664 45678889999755 544 4457788888888877
No 277
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=98.14 E-value=1.5e-05 Score=68.72 Aligned_cols=53 Identities=17% Similarity=0.175 Sum_probs=39.9
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
.++.||+-+.+.+...+...-....+..| -.+-|+||||||||++++.||+.+
T Consensus 25 ~~l~GQhla~~~v~~ai~~~l~~~~p~Kp-LVlSfHG~tGtGKn~v~~liA~~l 77 (127)
T PF06309_consen 25 RNLFGQHLAVEVVVNAIKGHLANPNPRKP-LVLSFHGWTGTGKNFVSRLIAEHL 77 (127)
T ss_pred HHccCcHHHHHHHHHHHHHHHcCCCCCCC-EEEEeecCCCCcHHHHHHHHHHHH
Confidence 78999999998886655544333333333 356699999999999999999985
No 278
>TIGR01618 phage_P_loop phage nucleotide-binding protein. This model represents an uncharacterized family of proteins from a number of phage of Gram-positive bacteria. This protein contains a P-loop motif, G/A-X-X-G-X-G-K-T near its amino end. The function of this protein is unknown.
Probab=98.14 E-value=8.5e-06 Score=77.87 Aligned_cols=104 Identities=19% Similarity=0.181 Sum_probs=54.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCC----------CCC-CchhHHHHHHHHHHHHH-hcCCCcEEEEccc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD----------VAP-LGPQAVTKIHQLFDWAK-KSKRGLLLFIDEA 336 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~----------~~~-~~~~~~~~l~~lf~~a~-~~~~~~vl~lDEi 336 (512)
..+||||+||+|||++|+.++.. ..++..+++. +.. ......+.+...+..+. ...++.+|+||.+
T Consensus 13 ~~~liyG~~G~GKtt~a~~~~~~--~~~~~~d~~~~~l~g~~~~~v~~~d~~~~~~~~~d~l~~~~~~~~~ydtVVIDsI 90 (220)
T TIGR01618 13 NMYLIYGKPGTGKTSTIKYLPGK--TLVLSFDMSSKVLIGDENVDIADHDDMPPIQAMVEFYVMQNIQAVKYDNIVIDNI 90 (220)
T ss_pred cEEEEECCCCCCHHHHHHhcCCC--CEEEeccccchhccCCCCCceeecCCCCCHHHHHHHHHHHHhccccCCEEEEecH
Confidence 46999999999999999999632 1122222211 000 00011122222222222 1345789999999
Q ss_pred hhhhh------hccc-C-----CCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 010366 337 DAFLC------ERNK-T-----YMSEAQRSALNALLFRTGDQSKDIVLAL 374 (512)
Q Consensus 337 d~l~~------~~~~-~-----~~~~~~~~~l~~ll~~~~~~~~~viiI~ 374 (512)
+.+.. .+.. . ..-......+..++..+...+.+|++++
T Consensus 91 ~~l~~~~~~~~~r~~k~~~~~~~~yg~~~~~fl~~l~~L~~~g~nII~tA 140 (220)
T TIGR01618 91 SALQNLWLENIGRAAKNGQPELQHYQKLDLWFLDLLTVLKESNKNIYATA 140 (220)
T ss_pred HHHHHHHHHHHhhhcCCCCcccccHHHHHHHHHHHHHHHHhCCCcEEEEE
Confidence 99754 1211 1 1112344455666666655566666665
No 279
>COG1618 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=98.12 E-value=5.9e-05 Score=67.39 Aligned_cols=23 Identities=35% Similarity=0.589 Sum_probs=21.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.++++||||+||||++..++..+
T Consensus 7 ki~ITG~PGvGKtTl~~ki~e~L 29 (179)
T COG1618 7 KIFITGRPGVGKTTLVLKIAEKL 29 (179)
T ss_pred EEEEeCCCCccHHHHHHHHHHHH
Confidence 69999999999999999999887
No 280
>PRK04841 transcriptional regulator MalT; Provisional
Probab=98.12 E-value=0.00019 Score=83.32 Aligned_cols=183 Identities=16% Similarity=0.194 Sum_probs=105.7
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC------
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL------ 307 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~------ 307 (512)
||..-.++|-.+.+...+... ...+-++++||+|.|||+++..++...+ ++..++.....+.
T Consensus 9 ~p~~~~~~~~R~rl~~~l~~~-----------~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l~~~d~~~~~f~~ 76 (903)
T PRK04841 9 RPVRLHNTVVRERLLAKLSGA-----------NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSLDESDNQPERFAS 76 (903)
T ss_pred CCCCccccCcchHHHHHHhcc-----------cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEecCcccCCHHHHHH
Confidence 333346777777777766321 1223699999999999999999887766 6655554221100
Q ss_pred -----------c--h------------hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH
Q 010366 308 -----------G--P------------QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR 362 (512)
Q Consensus 308 -----------~--~------------~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~ 362 (512)
. . .....+..++........|.+|+|||++.+- .......+..++..
T Consensus 77 ~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lvlDD~h~~~--------~~~~~~~l~~l~~~ 148 (903)
T PRK04841 77 YLIAALQQATNGHCSKSEALAQKRQYASLSSLFAQLFIELADWHQPLYLVIDDYHLIT--------NPEIHEAMRFFLRH 148 (903)
T ss_pred HHHHHHHHhcCcccchhhhhhccCCcCCHHHHHHHHHHHHhcCCCCEEEEEeCcCcCC--------ChHHHHHHHHHHHh
Confidence 0 0 0011122333333333568899999999861 22344566666654
Q ss_pred cCCCCCCEEEEEeeCCCCCCCHHHHccccceeecC----CCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhh
Q 010366 363 TGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP----LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKI 438 (512)
Q Consensus 363 ~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~----~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 438 (512)
. +.++.+|++|.....+.-.-++.-+..+.+. +.+.++...++...+..
T Consensus 149 ~---~~~~~lv~~sR~~~~~~~~~l~~~~~~~~l~~~~l~f~~~e~~~ll~~~~~~------------------------ 201 (903)
T PRK04841 149 Q---PENLTLVVLSRNLPPLGIANLRVRDQLLEIGSQQLAFDHQEAQQFFDQRLSS------------------------ 201 (903)
T ss_pred C---CCCeEEEEEeCCCCCCchHhHHhcCcceecCHHhCCCCHHHHHHHHHhccCC------------------------
Confidence 3 4556665666442223211111112334444 77888888888765432
Q ss_pred hhcCCCHHHHHHHHHHcCCCcHHHHHHHH
Q 010366 439 EIKGLTDDILMEAAAKTEGFSGREIAKLM 467 (512)
Q Consensus 439 ~~~~~~~~~l~~la~~t~g~s~~dI~~lv 467 (512)
.++++.+..+...|.|+ |.-+..+.
T Consensus 202 ---~~~~~~~~~l~~~t~Gw-p~~l~l~~ 226 (903)
T PRK04841 202 ---PIEAAESSRLCDDVEGW-ATALQLIA 226 (903)
T ss_pred ---CCCHHHHHHHHHHhCCh-HHHHHHHH
Confidence 16778888999999885 44454333
No 281
>PHA02774 E1; Provisional
Probab=98.11 E-value=2.7e-05 Score=83.23 Aligned_cols=107 Identities=21% Similarity=0.236 Sum_probs=60.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE-EeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL-MTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 347 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~-v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~ 347 (512)
++++|+||||||||++|.+|++.++..++. +|...- +. +..+.. -.+++|||+-.-+
T Consensus 435 nciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~~s~--Fw----------Lqpl~d---~ki~vlDD~t~~~------- 492 (613)
T PHA02774 435 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNSKSH--FW----------LQPLAD---AKIALLDDATHPC------- 492 (613)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEECccc--cc----------cchhcc---CCEEEEecCcchH-------
Confidence 579999999999999999999998755543 554211 10 111221 3589999992210
Q ss_pred CCHHHHHHHHHHHHHc----CCC------CCCEEEEEeeCCCCCCCH---HHHccccceeecCCC
Q 010366 348 MSEAQRSALNALLFRT----GDQ------SKDIVLALATNRPGDLDS---AVADRIDEVLEFPLP 399 (512)
Q Consensus 348 ~~~~~~~~l~~ll~~~----~~~------~~~viiI~ttN~~~~l~~---al~~R~~~~i~~~~p 399 (512)
.......+..+|..- +.. -....+|.|||..-.-++ .|.+|+ ..+.|+.|
T Consensus 493 -w~y~d~~Lrn~LdG~~v~lD~Khk~~~q~k~pPlIITSN~d~~~~~~~~yL~sRi-~~f~F~n~ 555 (613)
T PHA02774 493 -WDYIDTYLRNALDGNPVSIDCKHKAPVQIKCPPLLITSNIDVKAEDRYKYLHSRI-TVFEFPNP 555 (613)
T ss_pred -HHHHHHHHHHHcCCCcceeeecccCcccccCCCEEEecCCCcccchhhHHhhhhE-EEEECCCC
Confidence 011222333333211 000 011356778986544444 455688 77777554
No 282
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=98.10 E-value=3.5e-05 Score=77.64 Aligned_cols=160 Identities=23% Similarity=0.228 Sum_probs=86.3
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC-----------
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL----------- 307 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~----------- 307 (512)
..|.+.+.....+..++ .+.. ..-|.+++|+|.+|||||.+++.+-+.++.+.+.+++-+...+
T Consensus 6 ~~v~~Re~qi~~L~~Ll---g~~~--~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~ecft~~~lle~IL~~~ 80 (438)
T KOG2543|consen 6 PNVPCRESQIRRLKSLL---GNNS--CTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVECFTYAILLEKILNKS 80 (438)
T ss_pred cCccchHHHHHHHHHHh---CCCC--cccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHHhccHHHHHHHHHHHh
Confidence 34445555555554443 2111 1233467999999999999999999999999888886553221
Q ss_pred -----ch-------hHHHHHHHHHHH---HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEE
Q 010366 308 -----GP-------QAVTKIHQLFDW---AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 372 (512)
Q Consensus 308 -----~~-------~~~~~l~~lf~~---a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~vii 372 (512)
.+ +....+..+|.. +.+.....+|++|.+|.+- +++...-..+..+-..+.. ..+.|
T Consensus 81 ~~~d~dg~~~~~~~en~~d~i~~l~q~~~~t~~d~~~~liLDnad~lr------D~~a~ll~~l~~L~el~~~--~~i~i 152 (438)
T KOG2543|consen 81 QLADKDGDKVEGDAENFSDFIYLLVQWPAATNRDQKVFLILDNADALR------DMDAILLQCLFRLYELLNE--PTIVI 152 (438)
T ss_pred ccCCCchhhhhhHHHHHHHHHHHHHhhHHhhccCceEEEEEcCHHhhh------ccchHHHHHHHHHHHHhCC--CceEE
Confidence 11 111112222322 2222335689999999983 1122222222222222222 24444
Q ss_pred EEeeCCCCCCCHHHHccc-cceeecCCCCHHHHHHHHHHH
Q 010366 373 ALATNRPGDLDSAVADRI-DEVLEFPLPGQEERFKLLKLY 411 (512)
Q Consensus 373 I~ttN~~~~l~~al~~R~-~~~i~~~~p~~~er~~Il~~~ 411 (512)
|+..-.....-..=.+-+ ..+++||.|+.++...|+..-
T Consensus 153 ils~~~~e~~y~~n~g~~~i~~l~fP~Ys~~e~~~Il~~~ 192 (438)
T KOG2543|consen 153 ILSAPSCEKQYLINTGTLEIVVLHFPQYSVEETQVILSRD 192 (438)
T ss_pred EEeccccHHHhhcccCCCCceEEecCCCCHHHHHHHHhcC
Confidence 444322211110001111 257799999999999887653
No 283
>PF07693 KAP_NTPase: KAP family P-loop domain; InterPro: IPR011646 The KAP (after Kidins220/ARMS and PifA) family of predicted NTPases are sporadically distributed across a wide phylogenetic range in bacteria and in animals. Many of the prokaryotic KAP NTPases are encoded in plasmids and tend to undergo disruption to form pseudogenes. A unique feature of all eukaryotic and certain bacterial KAP NTPases is the presence of two or four transmembrane helices inserted into the P-loop NTPase domain. These transmembrane helices anchor KAP NTPases in the membrane such that the P-loop domain is located on the intracellular side [].
Probab=98.08 E-value=0.00065 Score=69.06 Aligned_cols=133 Identities=17% Similarity=0.166 Sum_probs=71.3
Q ss_pred CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC---------------CCCCHHHHc-c
Q 010366 326 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP---------------GDLDSAVAD-R 389 (512)
Q Consensus 326 ~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~---------------~~l~~al~~-R 389 (512)
..+-||||||+|.+. ++....++..+ ..+- ...++++|.+.+.. .......+. -
T Consensus 171 ~~~iViiIDdLDR~~--------~~~i~~~l~~i-k~~~-~~~~i~~Il~~D~~~l~~ai~~~~~~~~~~~~~~~yLeKi 240 (325)
T PF07693_consen 171 KKRIVIIIDDLDRCS--------PEEIVELLEAI-KLLL-DFPNIIFILAFDPEILEKAIEKNYGEGFDEIDGREYLEKI 240 (325)
T ss_pred CceEEEEEcchhcCC--------cHHHHHHHHHH-HHhc-CCCCeEEEEEecHHHHHHHHHhhcCcccccccHHHHHHhh
Confidence 346799999999972 22333333332 2222 34788888887641 022234555 4
Q ss_pred ccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCCcHHHHHHHH
Q 010366 390 IDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSGREIAKLM 467 (512)
Q Consensus 390 ~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~s~~dI~~lv 467 (512)
|+..+.+|+|+..+...++...+............. ....... ..........+..+.... ...+||++.+++
T Consensus 241 iq~~~~lP~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~npR~ikr~i 315 (325)
T PF07693_consen 241 IQVPFSLPPPSPSDLERYLNELLESLESETNESDDI--ETLSNSA---SNENLRIDEILNDIIDSIDFSIGNPRDIKRFI 315 (325)
T ss_pred cCeEEEeCCCCHHHHHHHHHHHHHHhhhccccccch--hhhhhcc---hhhhhhHHHHHHHHHHhhhhcCCCHHHHHHHH
Confidence 567789999999998888888876654332211100 0000000 000000123344444332 245899999999
Q ss_pred HHHHHH
Q 010366 468 ASVQAA 473 (512)
Q Consensus 468 ~~~~aa 473 (512)
+.....
T Consensus 316 N~~~~~ 321 (325)
T PF07693_consen 316 NSLSLL 321 (325)
T ss_pred HHHHHH
Confidence 766543
No 284
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=98.01 E-value=7.2e-05 Score=68.89 Aligned_cols=105 Identities=22% Similarity=0.253 Sum_probs=62.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHH-----------------HHHHHHHh-cCCCcEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIH-----------------QLFDWAKK-SKRGLLL 331 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~-----------------~lf~~a~~-~~~~~vl 331 (512)
.++++||||+|||++|..++..++.+++++...... ..+...++. .+-..... ...+.+|
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~--~~e~~~ri~~h~~~R~~~w~t~E~~~~l~~~i~~~~~~~~~V 80 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPF--DDEMAARIAHHRQRRPAHWQTVEEPLDLAELLRADAAPGRCV 80 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCC--hHHHHHHHHHHHhcCCCCCeEecccccHHHHHHhhcCCCCEE
Confidence 489999999999999999999988888877765532 222222210 12222222 2336689
Q ss_pred EEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 332 FIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 332 ~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
+||-+..+....-...........+..++..+......+ |+++|.
T Consensus 81 lID~Lt~~~~n~l~~~~~~~~~~~l~~li~~L~~~~~tv--VlVs~E 125 (170)
T PRK05800 81 LVDCLTTWVTNLLFEEGEEAIAAEIDALLAALQQLPAKI--ILVTNE 125 (170)
T ss_pred EehhHHHHHHHHhcccchHHHHHHHHHHHHHHHcCCCCE--EEEEcC
Confidence 999999886543221100223445566666665444444 444444
No 285
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=5.7e-05 Score=84.70 Aligned_cols=166 Identities=19% Similarity=0.242 Sum_probs=111.0
Q ss_pred CCccccC-hHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC----------CCeEEEeCCCCCC
Q 010366 238 FGDVILH-PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----------LDYALMTGGDVAP 306 (512)
Q Consensus 238 ~~~vvg~-~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~----------~~~~~v~~~~~~~ 306 (512)
++.++|. ++-...+.+++... ..++-+|.|.||+|||.++.-+|...- ..++.++.+.+..
T Consensus 185 ldPvigr~deeirRvi~iL~Rr--------tk~NPvLVG~~gvgktaiv~gla~ri~~G~vp~~l~~~~l~~l~~g~l~a 256 (898)
T KOG1051|consen 185 LDPVIGRHDEEIRRVIEILSRK--------TKNNPVLVGEPGVGKTAIVEGLAQRIATGDVPETLKDKKLIALDFGSLVA 256 (898)
T ss_pred CCCccCCchHHHHHHHHHHhcc--------CCCCceEEecCCCCchhHHHHHHHHhhcCCCCccccccceEEEEhhhccc
Confidence 5778886 44444444433111 114689999999999999999998752 3456666544322
Q ss_pred ---CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC----
Q 010366 307 ---LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP---- 379 (512)
Q Consensus 307 ---~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~---- 379 (512)
.-++....+..+...+....++.||||||++-+.+.....+ .......|..++ ....+-+|+||..-
T Consensus 257 Ga~~rge~E~rlk~l~k~v~~~~~gvILfigelh~lvg~g~~~~-~~d~~nlLkp~L-----~rg~l~~IGatT~e~Y~k 330 (898)
T KOG1051|consen 257 GAKRRGEFEERLKELLKEVESGGGGVILFLGELHWLVGSGSNYG-AIDAANLLKPLL-----ARGGLWCIGATTLETYRK 330 (898)
T ss_pred CcccchHHHHHHHHHHHHHhcCCCcEEEEecceeeeecCCCcch-HHHHHHhhHHHH-----hcCCeEEEecccHHHHHH
Confidence 45667788888888877666688999999999877655422 112222333333 22338888876532
Q ss_pred -CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhh
Q 010366 380 -GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQ 418 (512)
Q Consensus 380 -~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~ 418 (512)
-.-+|++-+|| ..+.++.|+.++...|+...-..+...
T Consensus 331 ~iekdPalErrw-~l~~v~~pS~~~~~~iL~~l~~~~e~~ 369 (898)
T KOG1051|consen 331 CIEKDPALERRW-QLVLVPIPSVENLSLILPGLSERYEVH 369 (898)
T ss_pred HHhhCcchhhCc-ceeEeccCcccchhhhhhhhhhhhccc
Confidence 24589999999 778899999888777877776664443
No 286
>COG1485 Predicted ATPase [General function prediction only]
Probab=97.95 E-value=0.00011 Score=73.59 Aligned_cols=98 Identities=19% Similarity=0.208 Sum_probs=57.5
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCCe-EEEeCCCCCCCchhHHHH----------HHHHHHHHHhcCCCcEEEE
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLDY-ALMTGGDVAPLGPQAVTK----------IHQLFDWAKKSKRGLLLFI 333 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~-~~v~~~~~~~~~~~~~~~----------l~~lf~~a~~~~~~~vl~l 333 (512)
..|+++++|+||-|+|||+|.-.+-..+..+- ..+-...+ .....+. +..+-.... +..-||+|
T Consensus 62 ~~~~~GlYl~GgVGrGKT~LMD~Fy~~lp~~~k~R~HFh~F---M~~vH~~l~~l~g~~dpl~~iA~~~~--~~~~vLCf 136 (367)
T COG1485 62 HGPVRGLYLWGGVGRGKTMLMDLFYESLPGERKRRLHFHRF---MARVHQRLHTLQGQTDPLPPIADELA--AETRVLCF 136 (367)
T ss_pred CCCCceEEEECCCCccHHHHHHHHHhhCCccccccccHHHH---HHHHHHHHHHHcCCCCccHHHHHHHH--hcCCEEEe
Confidence 34778999999999999999998877654321 00000000 0000001 111111111 12459999
Q ss_pred ccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 334 DEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 334 DEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
||+..= .-.....|..|+..+ ...+|++|+|||.
T Consensus 137 DEF~Vt---------DI~DAMiL~rL~~~L--f~~GV~lvaTSN~ 170 (367)
T COG1485 137 DEFEVT---------DIADAMILGRLLEAL--FARGVVLVATSNT 170 (367)
T ss_pred eeeeec---------ChHHHHHHHHHHHHH--HHCCcEEEEeCCC
Confidence 999751 224445677777766 4568999999997
No 287
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=97.95 E-value=7.2e-06 Score=70.71 Aligned_cols=31 Identities=39% Similarity=0.733 Sum_probs=27.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
++|+|||||||||+|+.||+.++.+++.++.
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~i~~d~ 32 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPVISMDD 32 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEEEEEHH
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeEEEecc
Confidence 7899999999999999999999887776654
No 288
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=97.92 E-value=0.00011 Score=68.44 Aligned_cols=32 Identities=34% Similarity=0.355 Sum_probs=25.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
.++++||||||||+++..++... |.++++++.
T Consensus 1 ~~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~ 35 (187)
T cd01124 1 STLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTL 35 (187)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEEC
Confidence 37999999999999999886543 566666654
No 289
>PF10236 DAP3: Mitochondrial ribosomal death-associated protein 3; InterPro: IPR019368 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. This entry represents a family of conserved proteins which were originally described as death-associated-protein-3 (DAP-3). The proteins carry a P-loop DNA-binding motif, and induce apoptosis []. DAP3 has been shown to be a pro-apoptotic factor in the mitochondrial matrix [] and to be crucial for mitochondrial biogenesis and so has also been designated as MRP-S29 (mitochondrial ribosomal protein subunit 29).
Probab=97.91 E-value=0.0012 Score=66.96 Aligned_cols=129 Identities=19% Similarity=0.172 Sum_probs=72.9
Q ss_pred HHHHHHHHHhcC--CCcEEEEccchhhhhhcccC-----CCCHHHHHHHHHHHHHc--CCCCCC-EEE--EEeeCC---C
Q 010366 315 IHQLFDWAKKSK--RGLLLFIDEADAFLCERNKT-----YMSEAQRSALNALLFRT--GDQSKD-IVL--ALATNR---P 379 (512)
Q Consensus 315 l~~lf~~a~~~~--~~~vl~lDEid~l~~~~~~~-----~~~~~~~~~l~~ll~~~--~~~~~~-vii--I~ttN~---~ 379 (512)
+..+++...... .|.++.||++..++....-. ......-.....|+..+ .....+ .++ +.+|.. +
T Consensus 142 ~~~l~~EL~~~~~~~PVL~avD~~n~l~~~S~Y~~~~~~~I~~~~L~l~~~f~~~~s~~~~~~nG~~v~~l~~t~~~~~~ 221 (309)
T PF10236_consen 142 FQALIRELKAQSKRPPVLVAVDGFNALFGPSAYRDPDFKPIHPHDLTLVRLFLDLLSGKRDFKNGAVVTALAATSVSNAP 221 (309)
T ss_pred HHHHHHHHHhcccCCceEEEehhhHHhhCCccccCCCCccccHHHhhHHHHHHHHhcCccccCCCeEEEEEecccccccc
Confidence 445555555444 37788999999998764221 12334444555555542 223233 333 333322 2
Q ss_pred C--CCCHHHHcccc---------------------ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhh
Q 010366 380 G--DLDSAVADRID---------------------EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQ 436 (512)
Q Consensus 380 ~--~l~~al~~R~~---------------------~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~ 436 (512)
. .++.++..+-. ..|.++.++.+|...+++.+.........
T Consensus 222 ~~~~l~~~L~~~~~~~~~dPy~~~d~~~~~~l~~~~~i~v~~~s~~E~~~ll~yy~~~~~l~~~---------------- 285 (309)
T PF10236_consen 222 KSPTLPVALGGKEGFPHLDPYVKRDPRVAESLKGVKPIEVPRLSKEEARSLLEYYADSGWLRSR---------------- 285 (309)
T ss_pred CCccchhhhccccCCCCCCCcccccHHHHHHhcCCceEEeCCCCHHHHHHHHHHHHHCCccccC----------------
Confidence 2 34444443221 26799999999999999999876432210
Q ss_pred hhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 437 KIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 437 ~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
..++...+.+.-.+. .+|+++.+
T Consensus 286 -----~~~~~~~e~~~~~s~-GNp~el~k 308 (309)
T PF10236_consen 286 -----VDEELVLEKLFLSSN-GNPRELEK 308 (309)
T ss_pred -----CCCHHHHHHHHHhcC-CCHHHhcc
Confidence 244556666665554 47888764
No 290
>PF12780 AAA_8: P-loop containing dynein motor region D4; InterPro: IPR024317 The 380 kDa motor unit of dynein belongs to the AAA class of chaperone-like ATPases. The core of the 380 kDa motor unit contains a concatenated chain of six AAA modules, of which four (D1 - D4) correspond to the ATP binding sites with P-loop signatures described previously, and two (D5, D6) are modules in which the P loop has been lost in evolution. This particular entry represents the D4 ATP-binding domain of the motor [].; PDB: 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=97.91 E-value=0.00041 Score=68.56 Aligned_cols=165 Identities=13% Similarity=0.175 Sum_probs=94.0
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCc-hhHHHHHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG-PQAVTKIHQ 317 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~-~~~~~~l~~ 317 (512)
-++|.-+++.+.+..+.+... .|.+|.||.|.+||||+++++..|.-.+..++.+.... .++ .+..+.++.
T Consensus 8 m~lVlf~~ai~hi~ri~RvL~------~~~Gh~LLvG~~GsGr~sl~rLaa~i~~~~~~~i~~~~--~y~~~~f~~dLk~ 79 (268)
T PF12780_consen 8 MNLVLFDEAIEHIARISRVLS------QPRGHALLVGVGGSGRQSLARLAAFICGYEVFQIEITK--GYSIKDFKEDLKK 79 (268)
T ss_dssp ------HHHHHHHHHHHHHHC------STTEEEEEECTTTSCHHHHHHHHHHHTTEEEE-TTTST--TTHHHHHHHHHHH
T ss_pred cceeeHHHHHHHHHHHHHHHc------CCCCCeEEecCCCccHHHHHHHHHHHhccceEEEEeeC--CcCHHHHHHHHHH
Confidence 678888898888877776654 34468999999999999999988888888888776543 222 233456777
Q ss_pred HHHHHHhcCCCcEEEEccchh-----------hhhhcccCC-C-CHHHHHH--------------------HHHHHHHcC
Q 010366 318 LFDWAKKSKRGLLLFIDEADA-----------FLCERNKTY-M-SEAQRSA--------------------LNALLFRTG 364 (512)
Q Consensus 318 lf~~a~~~~~~~vl~lDEid~-----------l~~~~~~~~-~-~~~~~~~--------------------l~~ll~~~~ 364 (512)
++..+.-.+.+.+++|+|-+- |+....-++ . .++.... ++.|+...
T Consensus 80 ~~~~ag~~~~~~vfll~d~qi~~~~fLe~in~LL~sGeip~LF~~eE~~~i~~~l~~~~~~~~~~~~~~~~~~~F~~rv- 158 (268)
T PF12780_consen 80 ALQKAGIKGKPTVFLLTDSQIVDESFLEDINSLLSSGEIPNLFTKEELDNIISSLREEAKAEGISDSRESLYEFFIERV- 158 (268)
T ss_dssp HHHHHHCS-S-EEEEEECCCSSSCHHHHHHHHHHHCSS-TTTS-TCHHHHHHHHHHHHHHHCT--SSHHHHHHHHHHHH-
T ss_pred HHHHHhccCCCeEEEecCcccchHhHHHHHHHHHhCCCCCCCccHHHHHHHHHHhHHHHHHcCCCCchHHHHHHHHHHH-
Confidence 777777666678888766432 222111111 0 1111112 22222222
Q ss_pred CCCCCEEEEEeeCCC-CCCC------HHHHccccceeecCCCCHHHHHHHHHHHHHHH
Q 010366 365 DQSKDIVLALATNRP-GDLD------SAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 415 (512)
Q Consensus 365 ~~~~~viiI~ttN~~-~~l~------~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~ 415 (512)
..+.-||++.+.. ..+. |++.+++ .+..|.+-+.+....+-..++...
T Consensus 159 --r~nLHivl~~sp~~~~~r~~~~~fPaL~~~c-tIdW~~~W~~eaL~~Va~~~l~~~ 213 (268)
T PF12780_consen 159 --RKNLHIVLCMSPVGPNFRDRCRSFPALVNCC-TIDWFDPWPEEALLSVANKFLSDI 213 (268)
T ss_dssp --CCCEEEEEEESTTTTCCCHHHHHHCCHHHHS-EEEEEES--HHHHHHHHHHHCCHH
T ss_pred --HhheeEEEEECCCCchHHHHHHhCcchhccc-EEEeCCcCCHHHHHHHHHHHHHhh
Confidence 2344455544432 2333 6777777 666777777788888888877664
No 291
>PRK15455 PrkA family serine protein kinase; Provisional
Probab=97.91 E-value=2e-05 Score=84.14 Aligned_cols=63 Identities=16% Similarity=0.173 Sum_probs=47.1
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC-CCeEEEeC
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-LDYALMTG 301 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-~~~~~v~~ 301 (512)
-|+++.|.++++++|..++........ .+...++|+||||+|||+||+.||+.+. .|++.+.+
T Consensus 74 fF~d~yGlee~ieriv~~l~~Aa~gl~--~~~~IL~LvGPpG~GKSsLa~~la~~le~~~~Y~~kg 137 (644)
T PRK15455 74 AFEEFYGMEEAIEQIVSYFRHAAQGLE--EKKQILYLLGPVGGGKSSLAERLKSLMERVPIYVLKA 137 (644)
T ss_pred chhcccCcHHHHHHHHHHHHHHHHhcC--CCCceEEEecCCCCCchHHHHHHHHHHHhCcceeecC
Confidence 489999999999999776643332222 2224799999999999999999999875 45555544
No 292
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=97.88 E-value=1.9e-05 Score=74.43 Aligned_cols=122 Identities=21% Similarity=0.281 Sum_probs=59.7
Q ss_pred eEEecCCCCchHHHHHHH-HHH-h--CCCeEEEeCCCC--CCCch---hHHH-------------HHHHHHHHHHhcCCC
Q 010366 271 MLFYGPPGTGKTMAAREL-ARK-S--GLDYALMTGGDV--APLGP---QAVT-------------KIHQLFDWAKKSKRG 328 (512)
Q Consensus 271 vLL~GppGtGKT~lA~al-A~~-l--~~~~~~v~~~~~--~~~~~---~~~~-------------~l~~lf~~a~~~~~~ 328 (512)
.+++|.||+|||+.|-.. ... + |.+++. |...+ ..... .... .......+.. ...+
T Consensus 3 ~~~~G~pGsGKS~~av~~~i~~~l~~gr~V~t-ni~gL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 80 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSYVIIPALKKGRPVYT-NIPGLNIEKIQPVLGYDIPTRLIDLSDPDFEEDWDDPDDWRK-LPKG 80 (193)
T ss_dssp EEEE--TTSSHHHHHHHHHHH-GGGS---EEE---TTB-S--EEEE--TTT-S-----S--SSSEEGGGHHHHTT-SGTT
T ss_pred EEEEcCCCCcHhHHHHHHHHHHHHhCCCEEEE-ccCCcchhhhhhhccccccccccccccccchhhhhhhhhhcc-cCCC
Confidence 689999999999977554 332 2 455443 33211 11000 0000 0011222221 2257
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCC
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLP 399 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p 399 (512)
++|+|||+..+++.+.... ......+ .++... ...+.-||++|..+..+|+.+++.++..+.+..+
T Consensus 81 ~liviDEa~~~~~~r~~~~--~~~~~~~-~~l~~h--Rh~g~diiliTQ~~~~id~~ir~lve~~~~~~k~ 146 (193)
T PF05707_consen 81 SLIVIDEAQNFFPSRSWKG--KKVPEII-EFLAQH--RHYGWDIILITQSPSQIDKFIRDLVEYHYHCRKL 146 (193)
T ss_dssp -EEEETTGGGTSB---T-T------HHH-HGGGGC--CCTT-EEEEEES-GGGB-HHHHCCEEEEEEEEE-
T ss_pred cEEEEECChhhcCCCcccc--ccchHHH-HHHHHh--CcCCcEEEEEeCCHHHHhHHHHHHHheEEEEEee
Confidence 8999999999988876631 1223334 444333 4556788999999999999999877776665443
No 293
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=97.85 E-value=0.00016 Score=66.47 Aligned_cols=104 Identities=20% Similarity=0.251 Sum_probs=62.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHH-----------------HHHHHHHHhcCCCcEEEE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKI-----------------HQLFDWAKKSKRGLLLFI 333 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l-----------------~~lf~~a~~~~~~~vl~l 333 (512)
+|++||||+|||++|..++...+.+.+++...... +.+....+ ..+.+.......+.+|+|
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~--d~em~~rI~~H~~~R~~~w~t~E~~~~l~~~l~~~~~~~~VLI 79 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAF--DDEMAERIARHRKRRPAHWRTIETPRDLVSALKELDPGDVVLI 79 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcC--CHHHHHHHHHHHHhCCCCceEeecHHHHHHHHHhcCCCCEEEE
Confidence 68999999999999999998877788887655432 22222221 222222322223678999
Q ss_pred ccchhhhhhcccCCCC---HHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 334 DEADAFLCERNKTYMS---EAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 334 DEid~l~~~~~~~~~~---~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
|-+..+...-...... ......+..++..+...... +|+++|.
T Consensus 80 Dclt~~~~n~l~~~~~~~~~~~~~~i~~l~~~l~~~~~~--~viVsnE 125 (169)
T cd00544 80 DCLTLWVTNLLFADLEEWEAAIADEIDALLAAVRNKPGT--LILVSNE 125 (169)
T ss_pred EcHhHHHHHhCCCccccchhHHHHHHHHHHHHHHcCCCc--EEEEECC
Confidence 9998876654332111 22344556677666443333 4445665
No 294
>PF14516 AAA_35: AAA-like domain
Probab=97.84 E-value=0.0014 Score=67.12 Aligned_cols=164 Identities=20% Similarity=0.187 Sum_probs=92.1
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchh--------------------------------H
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ--------------------------------A 311 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~--------------------------------~ 311 (512)
|...+.|+||..+|||++...+.+.+ +...+++++..+...... .
T Consensus 30 ~G~~~~I~apRq~GKTSll~~l~~~l~~~~~~~v~id~~~~~~~~~~~~~~f~~~~~~~i~~~L~l~~~l~~~w~~~~~~ 109 (331)
T PF14516_consen 30 PGSYIRIKAPRQMGKTSLLLRLLERLQQQGYRCVYIDLQQLGSAIFSDLEQFLRWFCEEISRQLKLDEKLDEYWDEEIGS 109 (331)
T ss_pred CCCEEEEECcccCCHHHHHHHHHHHHHHCCCEEEEEEeecCCCcccCCHHHHHHHHHHHHHHHcCCChhHHHHHHHhcCC
Confidence 33469999999999999998886655 677778877664321000 0
Q ss_pred HHHHHHHHHH--HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc-C-----CCCCCEEEEEeeCCCC---
Q 010366 312 VTKIHQLFDW--AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT-G-----DQSKDIVLALATNRPG--- 380 (512)
Q Consensus 312 ~~~l~~lf~~--a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~-~-----~~~~~viiI~ttN~~~--- 380 (512)
.......|+. ......|-||+|||||.++.... .....+ .+|... . .....+.+|++.....
T Consensus 110 ~~~~~~~~~~~ll~~~~~~lVL~iDEiD~l~~~~~------~~~dF~-~~LR~~~~~~~~~~~~~~L~li~~~~t~~~~~ 182 (331)
T PF14516_consen 110 KISCTEYFEEYLLKQIDKPLVLFIDEIDRLFEYPQ------IADDFF-GLLRSWYEQRKNNPIWQKLRLILAGSTEDYII 182 (331)
T ss_pred hhhHHHHHHHHHHhcCCCCEEEEEechhhhccCcc------hHHHHH-HHHHHHHHhcccCcccceEEEEEecCcccccc
Confidence 0111222222 22334578999999999864211 112222 222221 1 1123444554432211
Q ss_pred -CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 381 -DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 381 -~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
.....-. .+...+.++..+.++...+++.+-.. +++..++.|-..+.|.
T Consensus 183 ~~~~~SPF-NIg~~i~L~~Ft~~ev~~L~~~~~~~----------------------------~~~~~~~~l~~~tgGh- 232 (331)
T PF14516_consen 183 LDINQSPF-NIGQPIELPDFTPEEVQELAQRYGLE----------------------------FSQEQLEQLMDWTGGH- 232 (331)
T ss_pred cCCCCCCc-ccccceeCCCCCHHHHHHHHHhhhcc----------------------------CCHHHHHHHHHHHCCC-
Confidence 1111111 34467889999999988887765321 5566688888888774
Q ss_pred HHHHHHHH
Q 010366 460 GREIAKLM 467 (512)
Q Consensus 460 ~~dI~~lv 467 (512)
|-=+..+|
T Consensus 233 P~Lv~~~~ 240 (331)
T PF14516_consen 233 PYLVQKAC 240 (331)
T ss_pred HHHHHHHH
Confidence 54445554
No 295
>COG1373 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=97.84 E-value=0.00012 Score=76.75 Aligned_cols=121 Identities=20% Similarity=0.197 Sum_probs=76.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 349 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~ 349 (512)
.++|+||.+||||++++.+.......+++++..+...........+.... .+... ....+|||||+.+
T Consensus 39 i~~i~GpR~~GKTtll~~l~~~~~~~~iy~~~~d~~~~~~~l~d~~~~~~-~~~~~-~~~yifLDEIq~v---------- 106 (398)
T COG1373 39 IILILGPRQVGKTTLLKLLIKGLLEEIIYINFDDLRLDRIELLDLLRAYI-ELKER-EKSYIFLDEIQNV---------- 106 (398)
T ss_pred EEEEECCccccHHHHHHHHHhhCCcceEEEEecchhcchhhHHHHHHHHH-Hhhcc-CCceEEEecccCc----------
Confidence 69999999999999998888887665777776666544333322222222 22211 2468999999985
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEeeCC---CCCCCHHHHccccceeecCCCCHHHHHHH
Q 010366 350 EAQRSALNALLFRTGDQSKDIVLALATNR---PGDLDSAVADRIDEVLEFPLPGQEERFKL 407 (512)
Q Consensus 350 ~~~~~~l~~ll~~~~~~~~~viiI~ttN~---~~~l~~al~~R~~~~i~~~~p~~~er~~I 407 (512)
......+..+.... ..+++ |.++|. .....+.+..|. ..+.+.|.+..|...+
T Consensus 107 ~~W~~~lk~l~d~~---~~~v~-itgsss~ll~~~~~~~L~GR~-~~~~l~PlSF~Efl~~ 162 (398)
T COG1373 107 PDWERALKYLYDRG---NLDVL-ITGSSSSLLSKEISESLAGRG-KDLELYPLSFREFLKL 162 (398)
T ss_pred hhHHHHHHHHHccc---cceEE-EECCchhhhccchhhhcCCCc-eeEEECCCCHHHHHhh
Confidence 23444555555322 11343 333333 334556666786 8889999999998653
No 296
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.80 E-value=0.00011 Score=76.20 Aligned_cols=134 Identities=18% Similarity=0.216 Sum_probs=69.8
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh-------CCCeEEEeCCCCCC-----------------CchhHHHHHHHHHHHHH
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS-------GLDYALMTGGDVAP-----------------LGPQAVTKIHQLFDWAK 323 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l-------~~~~~~v~~~~~~~-----------------~~~~~~~~l~~lf~~a~ 323 (512)
+..++|+||+|+||||++..+|..+ +..+..+++..+.. ........+...+ .
T Consensus 174 ~~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvpv~~~~~~~~l~~~L---~ 250 (388)
T PRK12723 174 KRVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIPVKAIESFKDLKEEI---T 250 (388)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcceEeeCcHHHHHHHH---H
Confidence 3579999999999999999998765 23444444433210 0011112222222 2
Q ss_pred hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEE-eeCCCCCCCHHHHccc----cceeecCC
Q 010366 324 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLAL-ATNRPGDLDSAVADRI----DEVLEFPL 398 (512)
Q Consensus 324 ~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~-ttN~~~~l~~al~~R~----~~~i~~~~ 398 (512)
....+.+|+||.++.... ....-.-+..++..... ...+++|+ +|.....+. .+.++| ...+.|..
T Consensus 251 ~~~~~DlVLIDTaGr~~~-------~~~~l~el~~~l~~~~~-~~e~~LVlsat~~~~~~~-~~~~~~~~~~~~~~I~TK 321 (388)
T PRK12723 251 QSKDFDLVLVDTIGKSPK-------DFMKLAEMKELLNACGR-DAEFHLAVSSTTKTSDVK-EIFHQFSPFSYKTVIFTK 321 (388)
T ss_pred HhCCCCEEEEcCCCCCcc-------CHHHHHHHHHHHHhcCC-CCeEEEEEcCCCCHHHHH-HHHHHhcCCCCCEEEEEe
Confidence 234578999999987521 11122334444443332 22344444 444444444 333433 14556666
Q ss_pred CCHHHHHHHHHHHHH
Q 010366 399 PGQEERFKLLKLYLD 413 (512)
Q Consensus 399 p~~~er~~Il~~~l~ 413 (512)
.|...+.-.+-..+.
T Consensus 322 lDet~~~G~~l~~~~ 336 (388)
T PRK12723 322 LDETTCVGNLISLIY 336 (388)
T ss_pred ccCCCcchHHHHHHH
Confidence 666655544444443
No 297
>KOG0479 consensus DNA replication licensing factor, MCM3 component [Replication, recombination and repair]
Probab=97.79 E-value=0.0011 Score=70.07 Aligned_cols=243 Identities=16% Similarity=0.160 Sum_probs=136.9
Q ss_pred ccccChHHHHHHHHHHHH-hhchhhcCCCC---cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC--------
Q 010366 240 DVILHPSLQKRIRQLSGA-TANTKAHNAPF---RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL-------- 307 (512)
Q Consensus 240 ~vvg~~~~~~~l~~~~~~-~~~~~~~~~p~---~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~-------- 307 (512)
.|.|++.++++|.-++-- ....-.+|... -++|+.|.|-|.|+-|.+.+-+.....+....-+. +..
T Consensus 302 SI~GH~~vKkAillLLlGGvEk~L~NGshlRGDINiLlvGDPSvAKSQLLRyVLntAplAI~TTGRGS-SGVGLTAAVTt 380 (818)
T KOG0479|consen 302 SIYGHDYVKKAILLLLLGGVEKNLENGSHLRGDINILLVGDPSVAKSQLLRYVLNTAPLAIATTGRGS-SGVGLTAAVTT 380 (818)
T ss_pred ccccHHHHHHHHHHHHhccceeccCCCceeccceeEEEecCchHHHHHHHHHHHhcccccccccCCCC-CCccceeEEee
Confidence 456778888777543321 11111122211 27999999999999999999765432221111000 000
Q ss_pred -chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc----------CCCCCCEEEEEee
Q 010366 308 -GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT----------GDQSKDIVLALAT 376 (512)
Q Consensus 308 -~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~----------~~~~~~viiI~tt 376 (512)
...++.++.. -|--....+||+|||||++ ++..+..+...+.+- ...+..+.|+++.
T Consensus 381 D~eTGERRLEA---GAMVLADRGVVCIDEFDKM---------sDiDRvAIHEVMEQqtVTIaKAGIHasLNARCSVlAAA 448 (818)
T KOG0479|consen 381 DQETGERRLEA---GAMVLADRGVVCIDEFDKM---------SDIDRVAIHEVMEQQTVTIAKAGIHASLNARCSVLAAA 448 (818)
T ss_pred ccccchhhhhc---CceEEccCceEEehhcccc---------cchhHHHHHHHHhcceEEeEeccchhhhccceeeeeec
Confidence 0111222211 1111223579999999996 556677777776541 1245578899999
Q ss_pred CCCC-------------CCCHHHHccccceee-cCCCCHHHHHHHHHHHHHH--HhhhhCCCC---Cc-----ch-----
Q 010366 377 NRPG-------------DLDSAVADRIDEVLE-FPLPGQEERFKLLKLYLDK--YIAQAGSRK---PG-----LV----- 427 (512)
Q Consensus 377 N~~~-------------~l~~al~~R~~~~i~-~~~p~~~er~~Il~~~l~~--~~~~~~~~~---~~-----~~----- 427 (512)
|... .++.++++|||..+. ++.-+.+.=..|-.+.+.- +..++...+ +. .+
T Consensus 449 NPvyG~Yd~~k~P~eNIgLpDSLLSRFDLlFv~lD~~d~~~D~~iSeHVLRmHrY~~pg~~dGe~~~~g~~v~~~~~~~~ 528 (818)
T KOG0479|consen 449 NPVYGQYDQSKTPMENIGLPDSLLSRFDLLFVVLDDIDADIDRMISEHVLRMHRYLTPGEEDGEPVPEGNGVEGLSTENM 528 (818)
T ss_pred CccccccCCCCChhhccCCcHHHHhhhcEEEEEeccccchHHHHHHHHHHHHhhccCCcccCCCcccCCCcccccccccc
Confidence 9742 467899999987654 4444444333343333322 111111100 00 00
Q ss_pred ---------hh---h-----------------hhhh--hhhhhh-cCCCHHHHHHHHHHc---------------CCCcH
Q 010366 428 ---------HR---L-----------------FKSE--QQKIEI-KGLTDDILMEAAAKT---------------EGFSG 460 (512)
Q Consensus 428 ---------~~---~-----------------~~~~--~~~~~~-~~~~~~~l~~la~~t---------------~g~s~ 460 (512)
.. + +.+. ..+..+ +.++++....||+.+ ...++
T Consensus 529 e~~~et~v~ek~n~llhg~~k~~~~k~lti~F~rKYIhyAk~ri~P~Lt~ea~e~Ia~~Y~~LR~~d~~~d~~rt~PiTA 608 (818)
T KOG0479|consen 529 EDKKETEVFEKFNTLLHGKAKQQHEKLLTIDFMRKYIHYAKSRIKPKLTQEAAEYIAEEYTDLRNDDSRKDQERTSPITA 608 (818)
T ss_pred cccccchhHhhhhhhhhccccccccceeeHHHHHHHHHHHHhhcCccccHHHHHHHHHHHhhhhccccccccccccCCcH
Confidence 00 0 0000 111212 567888888888763 24577
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
|.++-|++.+.+.+...-+..++.+|...|++-..
T Consensus 609 RtLETlIRLaTAhAKaRlSk~V~~~DAe~A~~Ll~ 643 (818)
T KOG0479|consen 609 RTLETLIRLATAHAKARLSKVVEKDDAEAAVNLLR 643 (818)
T ss_pred HHHHHHHHHHHHHHHhhhcceeehhhHHHHHHHHH
Confidence 99999998888888777778999999988876543
No 298
>PRK04296 thymidine kinase; Provisional
Probab=97.79 E-value=0.00016 Score=67.96 Aligned_cols=70 Identities=21% Similarity=0.346 Sum_probs=40.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC-C-------CCC-CchhH----HHHHHHHHHHHH-hcCCCcEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGG-D-------VAP-LGPQA----VTKIHQLFDWAK-KSKRGLLLF 332 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~-~-------~~~-~~~~~----~~~l~~lf~~a~-~~~~~~vl~ 332 (512)
-.+++||||+|||+++..++..+ +..++.+.+. + +.. .+... ......++..+. ....+.+|+
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~~~d~~~~~~~i~~~lg~~~~~~~~~~~~~~~~~~~~~~~~~dvvi 83 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKPAIDDRYGEGKVVSRIGLSREAIPVSSDTDIFELIEEEGEKIDCVL 83 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEeccccccccCCcEecCCCCcccceEeCChHHHHHHHHhhCCCCCEEE
Confidence 37899999999999998887765 4455555331 1 000 11100 011223333332 233468999
Q ss_pred Eccchhh
Q 010366 333 IDEADAF 339 (512)
Q Consensus 333 lDEid~l 339 (512)
|||++.+
T Consensus 84 IDEaq~l 90 (190)
T PRK04296 84 IDEAQFL 90 (190)
T ss_pred EEccccC
Confidence 9999764
No 299
>PTZ00202 tuzin; Provisional
Probab=97.78 E-value=0.002 Score=66.99 Aligned_cols=61 Identities=20% Similarity=0.245 Sum_probs=46.5
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCC
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGG 302 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~ 302 (512)
...+++|.+.....+..++.... ... ++-+.|+||+|||||++++.++..++.+.+++|..
T Consensus 260 ~~~~FVGReaEla~Lr~VL~~~d----~~~-privvLtG~~G~GKTTLlR~~~~~l~~~qL~vNpr 320 (550)
T PTZ00202 260 VIRQFVSREAEESWVRQVLRRLD----TAH-PRIVVFTGFRGCGKSSLCRSAVRKEGMPAVFVDVR 320 (550)
T ss_pred CccCCCCcHHHHHHHHHHHhccC----CCC-ceEEEEECCCCCCHHHHHHHHHhcCCceEEEECCC
Confidence 35789999999999877764321 112 24688999999999999999999988776666654
No 300
>PRK07261 topology modulation protein; Provisional
Probab=97.78 E-value=0.00011 Score=67.69 Aligned_cols=102 Identities=17% Similarity=0.203 Sum_probs=63.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 349 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~ 349 (512)
.++|+|+||+||||+|+.|+..++.+++.++.-... +... +.+ .
T Consensus 2 ri~i~G~~GsGKSTla~~l~~~~~~~~i~~D~~~~~----------------------~~~~---~~~-----------~ 45 (171)
T PRK07261 2 KIAIIGYSGSGKSTLARKLSQHYNCPVLHLDTLHFQ----------------------PNWQ---ERD-----------D 45 (171)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhCCCeEecCCEEec----------------------cccc---cCC-----------H
Confidence 489999999999999999999988887765432110 0000 000 0
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHH
Q 010366 350 EAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 414 (512)
Q Consensus 350 ~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~ 414 (512)
......+..++ .... .|+-.|....+-+..+.++|.+|.+..|-......+++..+..
T Consensus 46 ~~~~~~~~~~~-----~~~~--wIidg~~~~~~~~~~l~~ad~vI~Ld~p~~~~~~R~lkR~~~~ 103 (171)
T PRK07261 46 DDMIADISNFL-----LKHD--WIIDGNYSWCLYEERMQEADQIIFLNFSRFNCLYRAFKRYLKY 103 (171)
T ss_pred HHHHHHHHHHH-----hCCC--EEEcCcchhhhHHHHHHHCCEEEEEcCCHHHHHHHHHHHHHHH
Confidence 01111222222 1122 4445555443435556688999999999888888888887754
No 301
>KOG3928 consensus Mitochondrial ribosome small subunit component, mediator of apoptosis DAP3 [Translation, ribosomal structure and biogenesis]
Probab=97.78 E-value=0.0013 Score=67.01 Aligned_cols=118 Identities=13% Similarity=0.061 Sum_probs=67.6
Q ss_pred CcEEEEccchhhhh----hccc-CCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeC---CCC--------------CCCHH
Q 010366 328 GLLLFIDEADAFLC----ERNK-TYMSEAQRSALNALLFRTGDQSKDIVLALATN---RPG--------------DLDSA 385 (512)
Q Consensus 328 ~~vl~lDEid~l~~----~~~~-~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN---~~~--------------~l~~a 385 (512)
+.+|.||++..++. .+.. ....+..-..+..+...+..+...-.+|++.. .+. .+++.
T Consensus 316 kVLvaID~~n~l~~~T~~k~~~~~~v~P~dl~li~~~~~~i~ndwt~g~vi~a~s~~~~~~a~~h~gv~~y~pr~llg~e 395 (461)
T KOG3928|consen 316 KVLVAIDNFNSLFTVTAYKSEDNKPVTPLDLTLIHLLRDIISNDWTFGSVIMAISGVTTPSAFGHLGVAPYVPRKLLGEE 395 (461)
T ss_pred cEEEEEcCcchheeeeeeeccccCcCCchhhhHHHHHHHHHhcccccceEEEEecccccchhccccccccCCchHhcCcc
Confidence 45888999999987 2222 22233334445555555543333324444443 111 12232
Q ss_pred HHc---cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 386 VAD---RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 386 l~~---R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
... -| ..|+++.++.+|-..++.++++..... . +.-+++..+.+--.+ +++|+.
T Consensus 396 gfe~lqpf-~pi~v~nYt~~E~~~~i~YYl~~nwl~-k--------------------kv~~Ee~~kql~fLS-ngNP~l 452 (461)
T KOG3928|consen 396 GFEALQPF-VPIEVENYTLDEFEALIDYYLQSNWLL-K--------------------KVPGEENIKQLYFLS-NGNPSL 452 (461)
T ss_pred chhhccCc-CccccCCCCHHHHHHHHHHHHHhhHHH-h--------------------hcCcccchhhhhhhc-CCCHHH
Confidence 222 34 457889999999999999999875432 0 012245555555555 557888
Q ss_pred HHHHHH
Q 010366 463 IAKLMA 468 (512)
Q Consensus 463 I~~lv~ 468 (512)
++.+|.
T Consensus 453 ~~~lca 458 (461)
T KOG3928|consen 453 MERLCA 458 (461)
T ss_pred HHHHHH
Confidence 887774
No 302
>PHA02624 large T antigen; Provisional
Probab=97.76 E-value=9.7e-05 Score=79.36 Aligned_cols=35 Identities=31% Similarity=0.313 Sum_probs=30.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~ 303 (512)
+.++|+||||||||+++.+|++.++...+.+|++.
T Consensus 432 ~~il~~GPpnTGKTtf~~sLl~~L~G~vlsVNsPt 466 (647)
T PHA02624 432 RYWLFKGPVNSGKTTLAAALLDLCGGKSLNVNCPP 466 (647)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEEEeeCCc
Confidence 47999999999999999999999977777777543
No 303
>PRK00131 aroK shikimate kinase; Reviewed
Probab=97.74 E-value=3.1e-05 Score=71.07 Aligned_cols=32 Identities=31% Similarity=0.458 Sum_probs=28.7
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
+..++|+||||||||++|+.||..++.+++..
T Consensus 4 ~~~i~l~G~~GsGKstla~~La~~l~~~~~d~ 35 (175)
T PRK00131 4 GPNIVLIGFMGAGKSTIGRLLAKRLGYDFIDT 35 (175)
T ss_pred CCeEEEEcCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 45799999999999999999999999888854
No 304
>PRK08118 topology modulation protein; Reviewed
Probab=97.73 E-value=2.8e-05 Score=71.45 Aligned_cols=102 Identities=18% Similarity=0.216 Sum_probs=63.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMS 349 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~ 349 (512)
.++++||||+||||+|+.|++.++.+++.++.-... ++....++
T Consensus 3 rI~I~G~~GsGKSTlak~L~~~l~~~~~~lD~l~~~----------------------~~w~~~~~-------------- 46 (167)
T PRK08118 3 KIILIGSGGSGKSTLARQLGEKLNIPVHHLDALFWK----------------------PNWEGVPK-------------- 46 (167)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCceecchhhcc----------------------cCCcCCCH--------------
Confidence 599999999999999999999999998877642110 00000000
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHH
Q 010366 350 EAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKY 415 (512)
Q Consensus 350 ~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~ 415 (512)
......+..++. ..+ .|+-.|.+..++. .+.++|.+|.++.|...-...+++..+...
T Consensus 47 ~~~~~~~~~~~~-----~~~--wVidG~~~~~~~~-~l~~~d~vi~Ld~p~~~~~~R~~~R~~~~~ 104 (167)
T PRK08118 47 EEQITVQNELVK-----EDE--WIIDGNYGGTMDI-RLNAADTIIFLDIPRTICLYRAFKRRVQYR 104 (167)
T ss_pred HHHHHHHHHHhc-----CCC--EEEeCCcchHHHH-HHHhCCEEEEEeCCHHHHHHHHHHHHHHHc
Confidence 011112222221 112 4455555554543 335788999999998888888888887643
No 305
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.71 E-value=0.0002 Score=73.82 Aligned_cols=35 Identities=34% Similarity=0.544 Sum_probs=26.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----C-CCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----G-LDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~-~~~~~v~~~~ 303 (512)
..++|+||+|+||||++..||..+ | ..+..++...
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~ 177 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDS 177 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 479999999999999999998763 3 2445555444
No 306
>PF03266 NTPase_1: NTPase; InterPro: IPR004948 This entry represents a family of nucleoside-triphosphatases which have activity towards ATP, GTP, CTP, TTP and UTP and may hydrolyse nucleoside diphosphates with lower efficiency []. It includes proteins from bacteria to human, and the function was determined first in a hyperthermophilic bacterium to be an NTPase []. The structure of one member-sequence represents a variation of the RecA fold, and implies that the function might be that of a DNA/RNA modifying enzyme []. The sequence carries both a Walker A and Walker B motif which together are characteristic of ATPases or GTPases. The protein exhibits an increased expression profile in human liver cholangiocarcinoma when compared to normal tissue [].; GO: 0005524 ATP binding, 0016740 transferase activity, 0019204 nucleotide phosphatase activity; PDB: 1YE8_A 2I3B_A.
Probab=97.70 E-value=1.7e-05 Score=72.89 Aligned_cols=23 Identities=30% Similarity=0.680 Sum_probs=20.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
+++|+|+||+||||+++.+.+.+
T Consensus 1 ~i~iTG~pG~GKTTll~k~i~~l 23 (168)
T PF03266_consen 1 HIFITGPPGVGKTTLLKKVIEEL 23 (168)
T ss_dssp EEEEES-TTSSHHHHHHHHHHHH
T ss_pred CEEEECcCCCCHHHHHHHHHHHh
Confidence 48999999999999999998887
No 307
>KOG2383 consensus Predicted ATPase [General function prediction only]
Probab=97.67 E-value=8.8e-05 Score=75.17 Aligned_cols=27 Identities=30% Similarity=0.508 Sum_probs=22.9
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHH
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..||++++|||.-|||||+|.-.+-..
T Consensus 111 ~~~PkGlYlYG~VGcGKTmLMDlFy~~ 137 (467)
T KOG2383|consen 111 PGPPKGLYLYGSVGCGKTMLMDLFYDA 137 (467)
T ss_pred CCCCceEEEecccCcchhHHHHHHhhc
Confidence 356799999999999999998877544
No 308
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.66 E-value=0.0005 Score=64.87 Aligned_cols=101 Identities=23% Similarity=0.250 Sum_probs=53.0
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC---------------------chhHHHHHHHHHHHHH
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL---------------------GPQAVTKIHQLFDWAK 323 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~---------------------~~~~~~~l~~lf~~a~ 323 (512)
|+.++|+||+|+||||++-.||..+ +..+..+++..+..- ..+....+...++...
T Consensus 1 p~vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp~~~~~~~~~~~~~~~~~l~~~~ 80 (196)
T PF00448_consen 1 PKVIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVPFYVARTESDPAEIAREALEKFR 80 (196)
T ss_dssp SEEEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEEEEESSTTSCHHHHHHHHHHHHH
T ss_pred CEEEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccccchhhcchhhHHHHHHHHHHHh
Confidence 3569999999999999988887765 444444444332110 0011122223333333
Q ss_pred hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 324 KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 324 ~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
. ....+||||=..... ........+..++..+ .+..+.+|+.++.
T Consensus 81 ~-~~~D~vlIDT~Gr~~-------~d~~~~~el~~~~~~~--~~~~~~LVlsa~~ 125 (196)
T PF00448_consen 81 K-KGYDLVLIDTAGRSP-------RDEELLEELKKLLEAL--NPDEVHLVLSATM 125 (196)
T ss_dssp H-TTSSEEEEEE-SSSS-------THHHHHHHHHHHHHHH--SSSEEEEEEEGGG
T ss_pred h-cCCCEEEEecCCcch-------hhHHHHHHHHHHhhhc--CCccceEEEeccc
Confidence 2 225688888776521 1123334455555555 3445666665544
No 309
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=97.66 E-value=0.00048 Score=65.00 Aligned_cols=91 Identities=22% Similarity=0.285 Sum_probs=49.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHH-----------HHHHHh--------cCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQL-----------FDWAKK--------SKR 327 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~l-----------f~~a~~--------~~~ 327 (512)
.+++.||||||||++++.++..+ +..++.+.... .....+..- +..... ..+
T Consensus 20 ~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~------~Aa~~L~~~~~~~a~Ti~~~l~~~~~~~~~~~~~~~~ 93 (196)
T PF13604_consen 20 VSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTN------KAAKELREKTGIEAQTIHSFLYRIPNGDDEGRPELPK 93 (196)
T ss_dssp EEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSH------HHHHHHHHHHTS-EEEHHHHTTEECCEECCSSCC-TS
T ss_pred EEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcH------HHHHHHHHhhCcchhhHHHHHhcCCcccccccccCCc
Confidence 58889999999999999987655 44555554321 111111111 000000 233
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
..+|+|||+..+ ....+..++........++++++-.+.
T Consensus 94 ~~vliVDEasmv------------~~~~~~~ll~~~~~~~~klilvGD~~Q 132 (196)
T PF13604_consen 94 KDVLIVDEASMV------------DSRQLARLLRLAKKSGAKLILVGDPNQ 132 (196)
T ss_dssp TSEEEESSGGG-------------BHHHHHHHHHHS-T-T-EEEEEE-TTS
T ss_pred ccEEEEeccccc------------CHHHHHHHHHHHHhcCCEEEEECCcch
Confidence 579999999885 233456666666544555666665543
No 310
>PF13479 AAA_24: AAA domain
Probab=97.64 E-value=0.00025 Score=67.80 Aligned_cols=102 Identities=17% Similarity=0.204 Sum_probs=57.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeE-EEeCCC--C------CCCchhHHHHHHHHHHHH-HhcCCCcEEEEccchhh
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYA-LMTGGD--V------APLGPQAVTKIHQLFDWA-KKSKRGLLLFIDEADAF 339 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~-~v~~~~--~------~~~~~~~~~~l~~lf~~a-~~~~~~~vl~lDEid~l 339 (512)
.++||||||+|||++|..+ +.+++ .+..+. + ......+...+.+.+.++ ....++.+|+||-++.+
T Consensus 5 ~~lIyG~~G~GKTt~a~~~----~k~l~id~E~g~~~~~~~~~~~~i~i~s~~~~~~~~~~l~~~~~~y~tiVIDsis~~ 80 (213)
T PF13479_consen 5 KILIYGPPGSGKTTLAASL----PKPLFIDTENGSDSLKFLDDGDVIPITSWEDFLEALDELEEDEADYDTIVIDSISWL 80 (213)
T ss_pred EEEEECCCCCCHHHHHHhC----CCeEEEEeCCCccchhhhcCCCeeCcCCHHHHHHHHHHHHhccCCCCEEEEECHHHH
Confidence 6999999999999999888 33332 222221 0 111122445555555543 23456889999988875
Q ss_pred hh--------------hcccC----CCCHHHHHHHHHHHHHc-CCCCCCEEEEEe
Q 010366 340 LC--------------ERNKT----YMSEAQRSALNALLFRT-GDQSKDIVLALA 375 (512)
Q Consensus 340 ~~--------------~~~~~----~~~~~~~~~l~~ll~~~-~~~~~~viiI~t 375 (512)
.. ++... ..-......+..++..+ ...+.+|++++-
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~yg~~~~~~~~~i~~l~~~~~~~VI~tah 135 (213)
T PF13479_consen 81 EDMCLEYICRQNKKKIKRSGDPDYGKGYGELQQEFMRFIDKLLNALGKNVIFTAH 135 (213)
T ss_pred HHHHHHHHhhhhcccccccCCCcccchHHHHHHHHHHHHHHHHHHCCCcEEEEEE
Confidence 11 01011 11123445556666643 336777877773
No 311
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=97.63 E-value=0.00036 Score=66.34 Aligned_cols=40 Identities=28% Similarity=0.379 Sum_probs=30.6
Q ss_pred cCCCC-cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCC
Q 010366 264 HNAPF-RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 303 (512)
Q Consensus 264 ~~~p~-~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~ 303 (512)
+|.|. ..++|+||||||||+++..++... +.+.++++...
T Consensus 7 GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 7 GGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 34443 458999999999999999987543 56788888765
No 312
>KOG3347 consensus Predicted nucleotide kinase/nuclear protein involved oxidative stress response [Nucleotide transport and metabolism]
Probab=97.63 E-value=4.6e-05 Score=67.04 Aligned_cols=31 Identities=48% Similarity=0.834 Sum_probs=28.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
++|++|.||||||+++..||..++.+++.++
T Consensus 9 NILvtGTPG~GKstl~~~lae~~~~~~i~is 39 (176)
T KOG3347|consen 9 NILVTGTPGTGKSTLAERLAEKTGLEYIEIS 39 (176)
T ss_pred CEEEeCCCCCCchhHHHHHHHHhCCceEehh
Confidence 7999999999999999999999998887664
No 313
>PF05272 VirE: Virulence-associated protein E; InterPro: IPR007936 This family contains several bacterial virulence-associated protein E like proteins.
Probab=97.63 E-value=0.00039 Score=65.60 Aligned_cols=104 Identities=18% Similarity=0.187 Sum_probs=62.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 348 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~ 348 (512)
..++|.|+.|+|||++.+.|+... + .+. .......+....+.. .-++.|||++.+.
T Consensus 53 ~~lvl~G~QG~GKStf~~~L~~~~----~-~d~-~~~~~~kd~~~~l~~----------~~iveldEl~~~~-------- 108 (198)
T PF05272_consen 53 TVLVLVGKQGIGKSTFFRKLGPEY----F-SDS-INDFDDKDFLEQLQG----------KWIVELDELDGLS-------- 108 (198)
T ss_pred eeeeEecCCcccHHHHHHHHhHHh----c-cCc-cccCCCcHHHHHHHH----------hHheeHHHHhhcc--------
Confidence 368889999999999999996651 1 111 111111222111111 3588999999863
Q ss_pred CHHHHHHHHHHHHHcC------------CCCCCEEEEEeeCCCCCC-CHHHHccccceeecCC
Q 010366 349 SEAQRSALNALLFRTG------------DQSKDIVLALATNRPGDL-DSAVADRIDEVLEFPL 398 (512)
Q Consensus 349 ~~~~~~~l~~ll~~~~------------~~~~~viiI~ttN~~~~l-~~al~~R~~~~i~~~~ 398 (512)
......+..++.... ..+...++|+|||..+-+ |+.--||| ..|.+..
T Consensus 109 -k~~~~~lK~~iT~~~~~~R~pY~~~~~~~~R~~~figTtN~~~~L~D~TGnRRf-~~v~v~~ 169 (198)
T PF05272_consen 109 -KKDVEALKSFITRRTDTYRPPYGRDPEEFPRRAVFIGTTNDDDFLKDPTGNRRF-WPVEVSK 169 (198)
T ss_pred -hhhHHHHHHHhcccceeeecCCcCcceeeceeEEEEeccCCcceeeCCCCCeEE-EEEEEcC
Confidence 233455666664421 234468899999997755 33445688 6666554
No 314
>PF04665 Pox_A32: Poxvirus A32 protein; InterPro: IPR006758 This entry contains uncharacterised proteins belonging to the B354L family which include the pox virus A32 protein. This is thought to be an ATPase involved in viral DNA packaging [].
Probab=97.62 E-value=0.0017 Score=62.87 Aligned_cols=131 Identities=13% Similarity=0.179 Sum_probs=76.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC--eEEEeCCCCCC-C-----------c--hhH-HHHH---HH-HHHHHH----
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAP-L-----------G--PQA-VTKI---HQ-LFDWAK---- 323 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~--~~~v~~~~~~~-~-----------~--~~~-~~~l---~~-lf~~a~---- 323 (512)
-.+++.||+|||||+++..+...+... .+.+-+..... + . .+. ...+ .. +-....
T Consensus 14 fr~viIG~sGSGKT~li~~lL~~~~~~f~~I~l~t~~~n~~~~~~i~p~~i~~~~~~e~le~~l~~~k~~I~k~~~k~~~ 93 (241)
T PF04665_consen 14 FRMVIIGKSGSGKTTLIKSLLYYLRHKFDHIFLITPEYNNEYYKYIWPDHIFKVFDKEELEYILIRQKEKIEKYIKKSPQ 93 (241)
T ss_pred ceEEEECCCCCCHHHHHHHHHHhhcccCCEEEEEecCCchhhhhhcchhhccccccHHHHHHHHHHHHHHHHHHhhhhcc
Confidence 369999999999999999997766432 22222111111 0 0 000 0011 11 111111
Q ss_pred -hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHH
Q 010366 324 -KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQE 402 (512)
Q Consensus 324 -~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~ 402 (512)
...+..+|+|||+..- ..-...+..++.. ...-++.+|..+.....+++.++.-++.++.++ .+..
T Consensus 94 ~k~~~~~LiIlDD~~~~----------~~k~~~l~~~~~~--gRH~~is~i~l~Q~~~~lp~~iR~n~~y~i~~~-~s~~ 160 (241)
T PF04665_consen 94 KKNNPRFLIILDDLGDK----------KLKSKILRQFFNN--GRHYNISIIFLSQSYFHLPPNIRSNIDYFIIFN-NSKR 160 (241)
T ss_pred cCCCCCeEEEEeCCCCc----------hhhhHHHHHHHhc--ccccceEEEEEeeecccCCHHHhhcceEEEEec-CcHH
Confidence 1133679999998531 1122345555532 245568888888888999999988887777776 5677
Q ss_pred HHHHHHHHHH
Q 010366 403 ERFKLLKLYL 412 (512)
Q Consensus 403 er~~Il~~~l 412 (512)
++..|++.+.
T Consensus 161 dl~~i~~~~~ 170 (241)
T PF04665_consen 161 DLENIYRNMN 170 (241)
T ss_pred HHHHHHHhcc
Confidence 7766666553
No 315
>COG4088 Predicted nucleotide kinase [Nucleotide transport and metabolism]
Probab=97.61 E-value=0.00041 Score=64.51 Aligned_cols=24 Identities=42% Similarity=0.652 Sum_probs=22.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
-++|+|+||+|||++|+.||+.+.
T Consensus 3 LiIlTGyPgsGKTtfakeLak~L~ 26 (261)
T COG4088 3 LIILTGYPGSGKTTFAKELAKELR 26 (261)
T ss_pred eEEEecCCCCCchHHHHHHHHHHH
Confidence 489999999999999999999985
No 316
>PRK08233 hypothetical protein; Provisional
Probab=97.60 E-value=0.00036 Score=64.49 Aligned_cols=32 Identities=19% Similarity=0.153 Sum_probs=25.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC-CCeEEEeC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG-LDYALMTG 301 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~-~~~~~v~~ 301 (512)
-+.|.|+||+||||+|+.|+..++ .+++.++.
T Consensus 5 iI~I~G~~GsGKtTla~~L~~~l~~~~~~~~d~ 37 (182)
T PRK08233 5 IITIAAVSGGGKTTLTERLTHKLKNSKALYFDR 37 (182)
T ss_pred EEEEECCCCCCHHHHHHHHHhhCCCCceEEECC
Confidence 478899999999999999999986 44544443
No 317
>PRK13947 shikimate kinase; Provisional
Probab=97.59 E-value=6.4e-05 Score=69.04 Aligned_cols=31 Identities=26% Similarity=0.415 Sum_probs=28.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
+++|.|+||||||++++.||+.++.+|+..+
T Consensus 3 ~I~l~G~~GsGKst~a~~La~~lg~~~id~d 33 (171)
T PRK13947 3 NIVLIGFMGTGKTTVGKRVATTLSFGFIDTD 33 (171)
T ss_pred eEEEEcCCCCCHHHHHHHHHHHhCCCEEECc
Confidence 6999999999999999999999999987654
No 318
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=97.57 E-value=0.0004 Score=71.94 Aligned_cols=95 Identities=17% Similarity=0.181 Sum_probs=55.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCch---------------hHHHHHHHHHHHHHhcCCCcE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP---------------QAVTKIHQLFDWAKKSKRGLL 330 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~---------------~~~~~l~~lf~~a~~~~~~~v 330 (512)
.-++|+||||+|||+++..+|..+ +.+++++++.+...... .....+..++..+... .+.+
T Consensus 83 slvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EEs~~qi~~Ra~rlg~~~~~l~l~~e~~le~I~~~i~~~-~~~l 161 (372)
T cd01121 83 SVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEESPEQIKLRADRLGISTENLYLLAETNLEDILASIEEL-KPDL 161 (372)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCcCHHHHHHHHHHcCCCcccEEEEccCcHHHHHHHHHhc-CCcE
Confidence 458999999999999999998664 35677777644211000 0011234455555443 4789
Q ss_pred EEEccchhhhhhccc--CCCCHHHHHHHHHHHHHcC
Q 010366 331 LFIDEADAFLCERNK--TYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 331 l~lDEid~l~~~~~~--~~~~~~~~~~l~~ll~~~~ 364 (512)
|+||++..+...... .+.....+..+..|.....
T Consensus 162 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~lak 197 (372)
T cd01121 162 VIIDSIQTVYSSELTSAPGSVSQVRECTAELMRFAK 197 (372)
T ss_pred EEEcchHHhhccccccCCCCHHHHHHHHHHHHHHHH
Confidence 999999988643321 1112234445555554443
No 319
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.57 E-value=0.00038 Score=73.18 Aligned_cols=90 Identities=18% Similarity=0.185 Sum_probs=58.7
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeE-EEeCCCCCC-------
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYA-LMTGGDVAP------- 306 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~-~v~~~~~~~------- 306 (512)
..+|+++...+.....+..++ ..|.+-+|++||+|+|||++..++...++.+.. .++..|...
T Consensus 234 ~l~l~~Lg~~~~~~~~~~~~~---------~~p~GliLvTGPTGSGKTTTLY~~L~~ln~~~~nI~TiEDPVE~~~~gI~ 304 (500)
T COG2804 234 ILDLEKLGMSPFQLARLLRLL---------NRPQGLILVTGPTGSGKTTTLYAALSELNTPERNIITIEDPVEYQLPGIN 304 (500)
T ss_pred cCCHHHhCCCHHHHHHHHHHH---------hCCCeEEEEeCCCCCCHHHHHHHHHHHhcCCCceEEEeeCCeeeecCCcc
Confidence 455777777777777776655 345567999999999999999999888865433 222222111
Q ss_pred -------CchhHHHHHHHHHHHHHhcCCCcEEEEccchh
Q 010366 307 -------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 338 (512)
Q Consensus 307 -------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~ 338 (512)
.|-.... .+....+.. |+||++.||-.
T Consensus 305 Q~qVN~k~gltfa~----~LRa~LRqD-PDvImVGEIRD 338 (500)
T COG2804 305 QVQVNPKIGLTFAR----ALRAILRQD-PDVIMVGEIRD 338 (500)
T ss_pred eeecccccCCCHHH----HHHHHhccC-CCeEEEeccCC
Confidence 1222222 333344444 89999999975
No 320
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=97.56 E-value=0.0011 Score=60.23 Aligned_cols=115 Identities=21% Similarity=0.218 Sum_probs=64.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEE---EeCCC-----------------------CC--CCchhHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYAL---MTGGD-----------------------VA--PLGPQAVTKIHQL 318 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~---v~~~~-----------------------~~--~~~~~~~~~l~~l 318 (512)
-+.+|+++|+|||++|-.+|-.. |..+.. +.+.. .. .............
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~~~~gE~~~l~~l~~v~~~~~g~~~~~~~~~~~~~~~~a~~~ 83 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGGWKYGELKALERLPNIEIHRMGRGFFWTTENDEEDIAAAAEG 83 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCCCccCHHHHHHhCCCcEEEECCCCCccCCCChHHHHHHHHHH
Confidence 47889999999999999886553 444433 22210 00 0000111122233
Q ss_pred HHH---HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceee
Q 010366 319 FDW---AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLE 395 (512)
Q Consensus 319 f~~---a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~ 395 (512)
+.. +.....+.+|+|||+...+.-.-- . ...++..+...+.+.-+|+|... .++.++.+.|.+-+
T Consensus 84 ~~~a~~~~~~~~~dLlVLDEi~~a~~~gli------~---~~~v~~ll~~rp~~~evIlTGr~---~p~~l~e~AD~VTE 151 (159)
T cd00561 84 WAFAKEAIASGEYDLVILDEINYALGYGLL------D---VEEVVDLLKAKPEDLELVLTGRN---APKELIEAADLVTE 151 (159)
T ss_pred HHHHHHHHhcCCCCEEEEechHhHhhCCCC------C---HHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCceeee
Confidence 333 233456899999999875432211 1 12333344456667778888755 56777777766655
Q ss_pred c
Q 010366 396 F 396 (512)
Q Consensus 396 ~ 396 (512)
+
T Consensus 152 m 152 (159)
T cd00561 152 M 152 (159)
T ss_pred c
Confidence 4
No 321
>PRK11823 DNA repair protein RadA; Provisional
Probab=97.55 E-value=0.00042 Score=73.64 Aligned_cols=94 Identities=18% Similarity=0.205 Sum_probs=55.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCch---------------hHHHHHHHHHHHHHhcCCCcE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP---------------QAVTKIHQLFDWAKKSKRGLL 330 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~---------------~~~~~l~~lf~~a~~~~~~~v 330 (512)
..++|+||||+|||+++..+|... +.++++++..+...... .....+..++..+... .+.+
T Consensus 81 s~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ees~~qi~~ra~rlg~~~~~l~~~~e~~l~~i~~~i~~~-~~~l 159 (446)
T PRK11823 81 SVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEESASQIKLRAERLGLPSDNLYLLAETNLEAILATIEEE-KPDL 159 (446)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccccHHHHHHHHHHcCCChhcEEEeCCCCHHHHHHHHHhh-CCCE
Confidence 357899999999999999998765 56788887654321000 0001233444545443 4789
Q ss_pred EEEccchhhhhhccc--CCCCHHHHHHHHHHHHHc
Q 010366 331 LFIDEADAFLCERNK--TYMSEAQRSALNALLFRT 363 (512)
Q Consensus 331 l~lDEid~l~~~~~~--~~~~~~~~~~l~~ll~~~ 363 (512)
|+||.+..+....-. .+.....+..+..|....
T Consensus 160 VVIDSIq~l~~~~~~~~~g~~~qvr~~~~~L~~~a 194 (446)
T PRK11823 160 VVIDSIQTMYSPELESAPGSVSQVRECAAELMRLA 194 (446)
T ss_pred EEEechhhhccccccCCCCCHHHHHHHHHHHHHHH
Confidence 999999988653221 111223444455555444
No 322
>PRK05973 replicative DNA helicase; Provisional
Probab=97.55 E-value=0.00086 Score=64.95 Aligned_cols=33 Identities=33% Similarity=0.390 Sum_probs=25.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
..++|.|+||+|||+++-.++... |.+.++++.
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSl 100 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTL 100 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEE
Confidence 368899999999999998886543 666666664
No 323
>PRK14528 adenylate kinase; Provisional
Probab=97.54 E-value=0.00062 Score=63.66 Aligned_cols=31 Identities=32% Similarity=0.653 Sum_probs=27.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
+.+++.||||+|||++|+.+|..++.+++.+
T Consensus 2 ~~i~i~G~pGsGKtt~a~~la~~~~~~~is~ 32 (186)
T PRK14528 2 KNIIFMGPPGAGKGTQAKILCERLSIPQIST 32 (186)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeC
Confidence 3589999999999999999999998776543
No 324
>PRK14531 adenylate kinase; Provisional
Probab=97.52 E-value=0.00072 Score=63.03 Aligned_cols=30 Identities=40% Similarity=0.675 Sum_probs=26.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++++||||+||||+++.||..+|.+++.+
T Consensus 4 ~i~i~G~pGsGKsT~~~~la~~~g~~~is~ 33 (183)
T PRK14531 4 RLLFLGPPGAGKGTQAARLCAAHGLRHLST 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCeEec
Confidence 599999999999999999999998766543
No 325
>PRK04040 adenylate kinase; Provisional
Probab=97.52 E-value=0.0005 Score=64.43 Aligned_cols=26 Identities=27% Similarity=0.422 Sum_probs=23.5
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+..++++|+|||||||+++.++..+.
T Consensus 2 ~~~i~v~G~pG~GKtt~~~~l~~~l~ 27 (188)
T PRK04040 2 MKVVVVTGVPGVGKTTVLNKALEKLK 27 (188)
T ss_pred CeEEEEEeCCCCCHHHHHHHHHHHhc
Confidence 35699999999999999999999984
No 326
>PRK06762 hypothetical protein; Provisional
Probab=97.52 E-value=0.0004 Score=63.48 Aligned_cols=33 Identities=27% Similarity=0.461 Sum_probs=27.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
.-++|+|+|||||||+|+.|+..++..++.++.
T Consensus 3 ~li~i~G~~GsGKST~A~~L~~~l~~~~~~i~~ 35 (166)
T PRK06762 3 TLIIIRGNSGSGKTTIAKQLQERLGRGTLLVSQ 35 (166)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEecH
Confidence 358999999999999999999998656666653
No 327
>PRK00625 shikimate kinase; Provisional
Probab=97.52 E-value=8.6e-05 Score=68.59 Aligned_cols=31 Identities=26% Similarity=0.376 Sum_probs=28.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
+++|+|+||+|||++++.+|+.++.+++.++
T Consensus 2 ~I~LiG~pGsGKTT~~k~La~~l~~~~id~D 32 (173)
T PRK00625 2 QIFLCGLPTVGKTSFGKALAKFLSLPFFDTD 32 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCEEEhh
Confidence 5899999999999999999999999998765
No 328
>cd03281 ABC_MSH5_euk MutS5 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.51 E-value=0.00074 Score=64.61 Aligned_cols=107 Identities=18% Similarity=0.126 Sum_probs=54.8
Q ss_pred cceEEecCCCCchHHHHHHHHH-----HhCCCeE--------------EEeCCC-CCCCchhHHHHHHHHHHHHHhcCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELAR-----KSGLDYA--------------LMTGGD-VAPLGPQAVTKIHQLFDWAKKSKRG 328 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~-----~l~~~~~--------------~v~~~~-~~~~~~~~~~~l~~lf~~a~~~~~~ 328 (512)
+.++|+||.|+|||++.+.++. ..|..+. .+...+ +..........+..+.........+
T Consensus 30 ~~~~itGpNg~GKStlLk~i~~~~~la~~G~~v~a~~~~~~~~d~i~~~l~~~~si~~~~S~f~~el~~l~~~l~~~~~~ 109 (213)
T cd03281 30 SIMVITGPNSSGKSVYLKQVALIVFLAHIGSFVPADSATIGLVDKIFTRMSSRESVSSGQSAFMIDLYQVSKALRLATRR 109 (213)
T ss_pred eEEEEECCCCCChHHHHHHHHHHHHHHhCCCeeEcCCcEEeeeeeeeeeeCCccChhhccchHHHHHHHHHHHHHhCCCC
Confidence 5699999999999999999973 2332211 111111 1111112223334443333334557
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCC-CCCEEEEEeeCCCCCC
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ-SKDIVLALATNRPGDL 382 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~-~~~viiI~ttN~~~~l 382 (512)
.+++|||+..-.. .......+..++..+... .....+|++|...+.+
T Consensus 110 slvllDE~~~gtd-------~~~~~~~~~ail~~l~~~~~~~~~vli~TH~~~l~ 157 (213)
T cd03281 110 SLVLIDEFGKGTD-------TEDGAGLLIATIEHLLKRGPECPRVIVSTHFHELF 157 (213)
T ss_pred cEEEeccccCCCC-------HHHHHHHHHHHHHHHHhcCCCCcEEEEEcChHHHH
Confidence 8999999976210 112233334444444222 2234566677655433
No 329
>PRK03839 putative kinase; Provisional
Probab=97.50 E-value=8.5e-05 Score=68.98 Aligned_cols=31 Identities=39% Similarity=0.621 Sum_probs=27.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.++|.|+||+||||+++.||+.++.+++.++
T Consensus 2 ~I~l~G~pGsGKsT~~~~La~~~~~~~id~d 32 (180)
T PRK03839 2 IIAITGTPGVGKTTVSKLLAEKLGYEYVDLT 32 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEehh
Confidence 3899999999999999999999998887553
No 330
>PRK08485 DNA polymerase III subunit delta'; Validated
Probab=97.50 E-value=0.0057 Score=57.09 Aligned_cols=86 Identities=16% Similarity=0.163 Sum_probs=67.1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccc
Q 010366 313 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDE 392 (512)
Q Consensus 313 ~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~ 392 (512)
..++.+...+........++|+++|.+ .....|.+|..+++++.+++||+.|..+..+.|.++|||..
T Consensus 40 d~iReii~~~~~~~~~~k~iI~~a~~l------------~~~A~NaLLK~LEEPp~~~~fiL~t~~~~~llpTI~SRc~~ 107 (206)
T PRK08485 40 EDAKEVIAEAYIAESEEKIIVIAAPSY------------GIEAQNALLKILEEPPKNICFIIVAKSKNLLLPTIRSRLII 107 (206)
T ss_pred HHHHHHHHHHhhCCCCcEEEEEchHhh------------CHHHHHHHHHHhcCCCCCeEEEEEeCChHhCchHHHhhhee
Confidence 344445554443333345668899985 45678999999999999999999999999999999999943
Q ss_pred ------------eeecCCCCHHHHHHHHHH
Q 010366 393 ------------VLEFPLPGQEERFKLLKL 410 (512)
Q Consensus 393 ------------~i~~~~p~~~er~~Il~~ 410 (512)
.+.+.+.+.++....++.
T Consensus 108 ~~~~~~~~~~~l~l~l~~l~~~~i~~~L~~ 137 (206)
T PRK08485 108 EKRKQKKPVKPLDLDLKKLDLKDIYEFLKE 137 (206)
T ss_pred ccccccccccccccccCCCCHHHHHHHHHH
Confidence 467889999999988887
No 331
>PRK13695 putative NTPase; Provisional
Probab=97.50 E-value=0.0014 Score=60.43 Aligned_cols=23 Identities=35% Similarity=0.543 Sum_probs=20.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.++|+|+||+|||++++.++..+
T Consensus 2 ~i~ltG~~G~GKTTll~~i~~~l 24 (174)
T PRK13695 2 KIGITGPPGVGKTTLVLKIAELL 24 (174)
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 48999999999999999987664
No 332
>PRK14974 cell division protein FtsY; Provisional
Probab=97.49 E-value=0.0025 Score=64.99 Aligned_cols=34 Identities=32% Similarity=0.443 Sum_probs=26.3
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
+..++|+||||+||||++..+|..+ +..+..+++
T Consensus 140 ~~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~ 176 (336)
T PRK14974 140 PVVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAG 176 (336)
T ss_pred CeEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 4579999999999999999888765 344555544
No 333
>COG2909 MalT ATP-dependent transcriptional regulator [Transcription]
Probab=97.49 E-value=0.0023 Score=70.81 Aligned_cols=173 Identities=23% Similarity=0.268 Sum_probs=101.9
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh--CCCeEEEeC--CCCC--------
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS--GLDYALMTG--GDVA-------- 305 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l--~~~~~~v~~--~~~~-------- 305 (512)
..+.|..+.+...+. .+...+-++|+-|.|.||||++-.++... +..+..+++ ++-.
T Consensus 18 ~~~~v~R~rL~~~L~-----------~~~~~RL~li~APAGfGKttl~aq~~~~~~~~~~v~Wlslde~dndp~rF~~yL 86 (894)
T COG2909 18 PDNYVVRPRLLDRLR-----------RANDYRLILISAPAGFGKTTLLAQWRELAADGAAVAWLSLDESDNDPARFLSYL 86 (894)
T ss_pred cccccccHHHHHHHh-----------cCCCceEEEEeCCCCCcHHHHHHHHHHhcCcccceeEeecCCccCCHHHHHHHH
Confidence 455565566555552 22334579999999999999999997633 333444443 3211
Q ss_pred ---------CCchh------------HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 306 ---------PLGPQ------------AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 306 ---------~~~~~------------~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
..+.. ...-+..+|........|.+|||||.+.+- .+.....+..|++..
T Consensus 87 i~al~~~~p~~~~~a~~l~q~~~~~~l~~l~~~L~~Ela~~~~pl~LVlDDyHli~--------~~~l~~~l~fLl~~~- 157 (894)
T COG2909 87 IAALQQATPTLGDEAQTLLQKHQYVSLESLLSSLLNELASYEGPLYLVLDDYHLIS--------DPALHEALRFLLKHA- 157 (894)
T ss_pred HHHHHHhCccccHHHHHHHHhcccccHHHHHHHHHHHHHhhcCceEEEeccccccC--------cccHHHHHHHHHHhC-
Confidence 11111 112356667777777778999999999862 345666777777654
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHccccceeec----CCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhh
Q 010366 365 DQSKDIVLALATNRPGDLDSAVADRIDEVLEF----PLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 440 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~----~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
+.++.+|.||...-.+.-+-++-=+..+++ =..+.+|-.+++....+.
T Consensus 158 --P~~l~lvv~SR~rP~l~la~lRlr~~llEi~~~~Lrf~~eE~~~fl~~~~~l-------------------------- 209 (894)
T COG2909 158 --PENLTLVVTSRSRPQLGLARLRLRDELLEIGSEELRFDTEEAAAFLNDRGSL-------------------------- 209 (894)
T ss_pred --CCCeEEEEEeccCCCCcccceeehhhHHhcChHhhcCChHHHHHHHHHcCCC--------------------------
Confidence 677888887754322221111100111222 123556666666654422
Q ss_pred cCCCHHHHHHHHHHcCCCc
Q 010366 441 KGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 441 ~~~~~~~l~~la~~t~g~s 459 (512)
.++...+..|...|+|+.
T Consensus 210 -~Ld~~~~~~L~~~teGW~ 227 (894)
T COG2909 210 -PLDAADLKALYDRTEGWA 227 (894)
T ss_pred -CCChHHHHHHHhhcccHH
Confidence 167778888888888863
No 334
>COG0563 Adk Adenylate kinase and related kinases [Nucleotide transport and metabolism]
Probab=97.49 E-value=0.00013 Score=67.61 Aligned_cols=33 Identities=42% Similarity=0.843 Sum_probs=26.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
.++|.||||+||||+|+.||+. .++.+++.+++
T Consensus 2 riiilG~pGaGK~T~A~~La~~--~~i~hlstgd~ 34 (178)
T COG0563 2 RILILGPPGAGKSTLAKKLAKK--LGLPHLDTGDI 34 (178)
T ss_pred eEEEECCCCCCHHHHHHHHHHH--hCCcEEcHhHH
Confidence 4899999999999999999999 44555554443
No 335
>cd00464 SK Shikimate kinase (SK) is the fifth enzyme in the shikimate pathway, a seven-step biosynthetic pathway which converts erythrose-4-phosphate to chorismic acid, found in bacteria, fungi and plants. Chorismic acid is a important intermediate in the synthesis of aromatic compounds, such as aromatic amino acids, p-aminobenzoic acid, folate and ubiquinone. Shikimate kinase catalyses the phosphorylation of the 3-hydroxyl group of shikimic acid using ATP.
Probab=97.48 E-value=0.00011 Score=66.12 Aligned_cols=31 Identities=35% Similarity=0.571 Sum_probs=27.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
+++|+||||+|||++|+.||..++.+++..+
T Consensus 1 ~i~l~G~~GsGKstla~~la~~l~~~~~~~d 31 (154)
T cd00464 1 NIVLIGMMGAGKTTVGRLLAKALGLPFVDLD 31 (154)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHhCCCEEEch
Confidence 4899999999999999999999998877554
No 336
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=97.48 E-value=0.0008 Score=64.79 Aligned_cols=39 Identities=28% Similarity=0.389 Sum_probs=30.5
Q ss_pred cCCCCc-ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 264 HNAPFR-NMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 264 ~~~p~~-~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
+|.|.+ .++|+||||+|||+++..+|... +.+.++++..
T Consensus 18 GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 18 GGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 344433 57999999999999999998643 6778888876
No 337
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=97.47 E-value=0.00087 Score=67.81 Aligned_cols=79 Identities=20% Similarity=0.222 Sum_probs=49.2
Q ss_pred cCCCCc-ceEEecCCCCchHHHHHHHHHH---hCCCeEEEeCCCCCC----------------CchhHHHHHHHHHHHHH
Q 010366 264 HNAPFR-NMLFYGPPGTGKTMAARELARK---SGLDYALMTGGDVAP----------------LGPQAVTKIHQLFDWAK 323 (512)
Q Consensus 264 ~~~p~~-~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~~~~~~----------------~~~~~~~~l~~lf~~a~ 323 (512)
+|.|.+ .+.++||||||||+||-.++.. .+...++++...... ......+....+.....
T Consensus 50 GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~i~~~li 129 (325)
T cd00983 50 GGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVYAKKLGVDLDNLLISQPDTGEQALEIADSLV 129 (325)
T ss_pred CCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHHHHHcCCCHHHheecCCCCHHHHHHHHHHHH
Confidence 455544 5789999999999999988644 366777776533111 00111122223333334
Q ss_pred hcCCCcEEEEccchhhhhh
Q 010366 324 KSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 324 ~~~~~~vl~lDEid~l~~~ 342 (512)
+...+.+|+||-+-.+.+.
T Consensus 130 ~s~~~~lIVIDSvaal~~~ 148 (325)
T cd00983 130 RSGAVDLIVVDSVAALVPK 148 (325)
T ss_pred hccCCCEEEEcchHhhccc
Confidence 4455789999999998764
No 338
>PRK10536 hypothetical protein; Provisional
Probab=97.47 E-value=0.0008 Score=65.52 Aligned_cols=22 Identities=27% Similarity=0.330 Sum_probs=20.3
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++++||+|||||++|.+++..
T Consensus 76 lV~i~G~aGTGKT~La~a~a~~ 97 (262)
T PRK10536 76 LIFATGEAGCGKTWISAAKAAE 97 (262)
T ss_pred eEEEECCCCCCHHHHHHHHHHH
Confidence 5999999999999999999874
No 339
>COG4619 ABC-type uncharacterized transport system, ATPase component [General function prediction only]
Probab=97.47 E-value=0.0016 Score=58.79 Aligned_cols=24 Identities=25% Similarity=0.374 Sum_probs=21.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
-.++|+||+|||||++.+.+|.-.
T Consensus 30 e~iaitGPSG~GKStllk~va~Li 53 (223)
T COG4619 30 EFIAITGPSGCGKSTLLKIVASLI 53 (223)
T ss_pred ceEEEeCCCCccHHHHHHHHHhcc
Confidence 469999999999999999999865
No 340
>PF13671 AAA_33: AAA domain; PDB: 1LTQ_A 2IA5_K 1RC8_A 1LY1_A 1RRC_A 1RPZ_A 3ZVM_A 1YJ5_A 3ZVL_A 3U7E_B ....
Probab=97.46 E-value=0.00012 Score=64.78 Aligned_cols=23 Identities=43% Similarity=0.985 Sum_probs=22.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhC
Q 010366 271 MLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~ 293 (512)
++++|||||||||+|+.++..++
T Consensus 2 ii~~G~pgsGKSt~a~~l~~~~~ 24 (143)
T PF13671_consen 2 IILCGPPGSGKSTLAKRLAKRLG 24 (143)
T ss_dssp EEEEESTTSSHHHHHHHHHHHST
T ss_pred EEEECCCCCCHHHHHHHHHHHCC
Confidence 78999999999999999999988
No 341
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=97.45 E-value=0.00089 Score=64.50 Aligned_cols=102 Identities=21% Similarity=0.231 Sum_probs=57.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCCCCC--------C--------------------------chh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAP--------L--------------------------GPQ 310 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~~~~--------~--------------------------~~~ 310 (512)
..+|++||||||||+++..++... |.+.++++...-+. . ...
T Consensus 20 s~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~~~~l~~~~~s~g~d~~~~~~~g~l~~~d~~~~~~~~~~~~ 99 (226)
T PF06745_consen 20 SVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEPPEELIENMKSFGWDLEEYEDSGKLKIIDAFPERIGWSPND 99 (226)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS-HHHHHHHHHTTTS-HHHHHHTTSEEEEESSGGGST-TSCC
T ss_pred cEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCCHHHHHHHHHHcCCcHHHHhhcCCEEEEecccccccccccC
Confidence 468999999999999998875432 77777776433200 0 011
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeC
Q 010366 311 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN 377 (512)
Q Consensus 311 ~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN 377 (512)
....+..+...+...+ +.+++||-+..+ ..... ....+..+..+...+. ..++.+|+|+.
T Consensus 100 ~~~l~~~i~~~i~~~~-~~~vVIDsls~l-~~~~~---~~~~r~~l~~l~~~l~--~~~~t~llt~~ 159 (226)
T PF06745_consen 100 LEELLSKIREAIEELK-PDRVVIDSLSAL-LLYDD---PEELRRFLRALIKFLK--SRGVTTLLTSE 159 (226)
T ss_dssp HHHHHHHHHHHHHHHT-SSEEEEETHHHH-TTSSS---GGGHHHHHHHHHHHHH--HTTEEEEEEEE
T ss_pred HHHHHHHHHHHHHhcC-CCEEEEECHHHH-hhcCC---HHHHHHHHHHHHHHHH--HCCCEEEEEEc
Confidence 1222333333344444 689999999998 22222 2244556666666652 33455555544
No 342
>cd02027 APSK Adenosine 5'-phosphosulfate kinase (APSK) catalyzes the phosphorylation of adenosine 5'-phosphosulfate to form 3'-phosphoadenosine 5'-phosphosulfate (PAPS). The end-product PAPS is a biologically "activated" sulfate form important for the assimilation of inorganic sulfate.
Probab=97.45 E-value=0.00057 Score=61.48 Aligned_cols=31 Identities=32% Similarity=0.526 Sum_probs=26.6
Q ss_pred eEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 271 MLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++|+|+||+|||++|+.|+..+ +.+.+.++.
T Consensus 2 i~i~G~~GsGKSTla~~L~~~l~~~g~~~~~i~~ 35 (149)
T cd02027 2 IWLTGLSGSGKSTIARALEEKLFQRGRPVYVLDG 35 (149)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcC
Confidence 7899999999999999999988 566666654
No 343
>TIGR03574 selen_PSTK L-seryl-tRNA(Sec) kinase, archaeal. Members of this protein are L-seryl-tRNA(Sec) kinase. This enzyme is part of a two-step pathway in Eukaryota and Archaea for performing selenocysteine biosynthesis by changing serine misacylated on selenocysteine-tRNA to selenocysteine. This enzyme performs the first step, phosphorylation of the OH group of the serine side chain. This family represents archaeal proteins with this activity.
Probab=97.45 E-value=0.00052 Score=67.25 Aligned_cols=34 Identities=29% Similarity=0.574 Sum_probs=27.7
Q ss_pred eEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCC
Q 010366 271 MLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 304 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~ 304 (512)
++|+|+||+||||+|+.++..+ +.+++.++...+
T Consensus 2 Ivl~G~pGSGKST~a~~La~~l~~~~~~v~~i~~D~l 38 (249)
T TIGR03574 2 IILTGLPGVGKSTFSKELAKKLSEKNIDVIILGTDLI 38 (249)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHcCCceEEEccHHH
Confidence 7899999999999999999887 456677665333
No 344
>PRK13949 shikimate kinase; Provisional
Probab=97.44 E-value=0.00012 Score=67.38 Aligned_cols=32 Identities=31% Similarity=0.537 Sum_probs=28.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
..++|+||||+|||++++.||..++.+++..+
T Consensus 2 ~~I~liG~~GsGKstl~~~La~~l~~~~id~D 33 (169)
T PRK13949 2 ARIFLVGYMGAGKTTLGKALARELGLSFIDLD 33 (169)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCCeeccc
Confidence 36999999999999999999999998888654
No 345
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=97.43 E-value=0.0019 Score=62.61 Aligned_cols=33 Identities=24% Similarity=0.358 Sum_probs=24.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
..++++||||||||+++..++... +.+.++++.
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~ 60 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVST 60 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeC
Confidence 468999999999999986654433 455666653
No 346
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=97.43 E-value=0.0011 Score=68.18 Aligned_cols=35 Identities=23% Similarity=0.399 Sum_probs=27.1
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
++.++|+||+|+||||++..||..+ +..+..+++.
T Consensus 241 ~~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aD 278 (436)
T PRK11889 241 VQTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTD 278 (436)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecC
Confidence 3679999999999999999998776 3445555543
No 347
>cd01131 PilT Pilus retraction ATPase PilT. PilT is a nucleotide binding protein responsible for the retraction of type IV pili, likely by pili disassembly. This retraction provides the force required for travel of bacteria in low water environments by a mechanism known as twitching motility.
Probab=97.42 E-value=0.00069 Score=64.04 Aligned_cols=24 Identities=25% Similarity=0.430 Sum_probs=21.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
-++|+||+|+||||++++++..+.
T Consensus 3 lilI~GptGSGKTTll~~ll~~~~ 26 (198)
T cd01131 3 LVLVTGPTGSGKSTTLAAMIDYIN 26 (198)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 589999999999999999988774
No 348
>PRK14700 recombination factor protein RarA; Provisional
Probab=97.41 E-value=0.0021 Score=63.70 Aligned_cols=107 Identities=21% Similarity=0.239 Sum_probs=77.9
Q ss_pred CCCCEEEEEee--CCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 366 QSKDIVLALAT--NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 366 ~~~~viiI~tt--N~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
..+.+++|++| |..-.+.++++||+ .++.|.+++.++...+++..+......+. .. -.+
T Consensus 5 E~G~i~LIGATTENP~f~vn~ALlSR~-~v~~l~~L~~~di~~il~ral~~~~~~~~---------------~~---~~i 65 (300)
T PRK14700 5 ESGKIILIGATTENPTYYLNDALVSRL-FILRLKRLSLVATQKLIEKALSQDEVLAK---------------HK---FKI 65 (300)
T ss_pred cCCcEEEEeecCCCccceecHhhhhhh-heeeecCCCHHHHHHHHHHHHHhhhccCC---------------cC---CCc
Confidence 35667888865 66678999999999 99999999999999999999875211000 00 138
Q ss_pred CHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHh-C--CCCCccCHHHHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEGFSGREIAKLMASVQAAVY-G--SENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 444 ~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~-~--~~~~~it~e~~~~al~~~~ 495 (512)
+++.++.|+..+.| |.+.+++.+..+.. . .+...||.+++.+++....
T Consensus 66 ~~~al~~ia~~a~G----DaR~aLN~LE~a~~~~~~~~~~~it~~~~~~~~~~~~ 116 (300)
T PRK14700 66 DDGLYNAMHNYNEG----DCRKILNLLERMFLISTRGDEIYLNKELFDQAVGETS 116 (300)
T ss_pred CHHHHHHHHHhcCC----HHHHHHHHHHHHHhhccccCCCccCHHHHHHHHhHHH
Confidence 99999999988876 66777766665443 1 1123499999999886553
No 349
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=97.41 E-value=0.00032 Score=65.84 Aligned_cols=136 Identities=21% Similarity=0.191 Sum_probs=59.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 348 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~ 348 (512)
-++|+||+|||||.+|-.+|+.+|.|++..+...... ....+.+.... ... . -.=++|||-..- .+.
T Consensus 3 v~~i~GpT~tGKt~~ai~lA~~~g~pvI~~Driq~y~~l~v~Sgrp~~~---el~--~-~~RiyL~~r~l~----~G~-- 70 (233)
T PF01745_consen 3 VYLIVGPTGTGKTALAIALAQKTGAPVISLDRIQCYPELSVGSGRPTPS---ELK--G-TRRIYLDDRPLS----DGI-- 70 (233)
T ss_dssp EEEEE-STTSSHHHHHHHHHHHH--EEEEE-SGGG-GGGTTTTT---SG---GGT--T--EEEES----GG----G-S--
T ss_pred EEEEECCCCCChhHHHHHHHHHhCCCEEEecceecccccccccCCCCHH---HHc--c-cceeeecccccc----CCC--
Confidence 4799999999999999999999999999888544322 00001000000 000 0 112677765431 000
Q ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHc-----ccc-ceeecCCCCHHHHHHHHHHHHHHHhhh
Q 010366 349 SEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD-----RID-EVLEFPLPGQEERFKLLKLYLDKYIAQ 418 (512)
Q Consensus 349 ~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~-----R~~-~~i~~~~p~~~er~~Il~~~l~~~~~~ 418 (512)
-........|+..+.+....-.+|+-.-..+.+..-..+ .|. .+..++.|+.+.-..-.+....+....
T Consensus 71 -i~a~ea~~~Li~~v~~~~~~~~~IlEGGSISLl~~m~~~~~w~~~f~w~i~rl~l~d~~~f~~ra~~Rv~~ML~p 145 (233)
T PF01745_consen 71 -INAEEAHERLISEVNSYSAHGGLILEGGSISLLNCMAQDPYWSLDFRWHIRRLRLPDEEVFMARAKRRVRQMLRP 145 (233)
T ss_dssp ---HHHHHHHHHHHHHTTTTSSEEEEEE--HHHHHHHHH-TTTSSSSEEEEEE-----HHHHHHHHHHHHHHHHS-
T ss_pred -cCHHHHHHHHHHHHHhccccCceEEeCchHHHHHHHHhcccccCCCeEEEEEEECCChHHHHHHHHHHHHHhcCC
Confidence 122334444444443322233444433332222221222 222 455778899888777777777776654
No 350
>PRK14532 adenylate kinase; Provisional
Probab=97.40 E-value=0.00013 Score=68.16 Aligned_cols=29 Identities=31% Similarity=0.687 Sum_probs=25.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
+++|.|||||||||+|+.||+.++.+++.
T Consensus 2 ~i~~~G~pGsGKsT~a~~la~~~g~~~is 30 (188)
T PRK14532 2 NLILFGPPAAGKGTQAKRLVEERGMVQLS 30 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCeEEe
Confidence 48999999999999999999998865553
No 351
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=97.40 E-value=0.00047 Score=68.86 Aligned_cols=36 Identities=33% Similarity=0.431 Sum_probs=28.3
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh----C-CCeEEEeCCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS----G-LDYALMTGGD 303 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l----~-~~~~~v~~~~ 303 (512)
+..++|+||+|+||||++..||..+ + ..+..+++..
T Consensus 194 ~~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~~D~ 234 (282)
T TIGR03499 194 GGVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALITTDT 234 (282)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEECCc
Confidence 3579999999999999999998765 3 5666666544
No 352
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=97.40 E-value=0.00054 Score=59.24 Aligned_cols=23 Identities=35% Similarity=0.473 Sum_probs=20.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
+++++||||+|||+++-.++..+
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~ 24 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILEL 24 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHH
Confidence 68999999999999888876665
No 353
>cd01128 rho_factor Transcription termination factor rho is a bacterial ATP-dependent RNA/DNA helicase. It is a homohexamer. Each monomer consists of an N-terminal domain of the OB fold, which is responsible for binding to cysteine rich nucleotides. This alignment is of the C-terminal ATP binding domain.
Probab=97.40 E-value=0.00051 Score=67.20 Aligned_cols=25 Identities=28% Similarity=0.361 Sum_probs=22.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGL 294 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~ 294 (512)
.++|.||+|||||++++.+++.+..
T Consensus 18 r~~I~G~~G~GKTTLlr~I~n~l~~ 42 (249)
T cd01128 18 RGLIVAPPKAGKTTLLQSIANAITK 42 (249)
T ss_pred EEEEECCCCCCHHHHHHHHHhcccc
Confidence 5999999999999999999988754
No 354
>cd03283 ABC_MutS-like MutS-like homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form slid
Probab=97.40 E-value=0.001 Score=62.94 Aligned_cols=23 Identities=22% Similarity=0.354 Sum_probs=20.2
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
.-++|+||+|+|||++.+.++..
T Consensus 26 ~~~~ltGpNg~GKSTllr~i~~~ 48 (199)
T cd03283 26 NGILITGSNMSGKSTFLRTIGVN 48 (199)
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 35899999999999999999743
No 355
>TIGR01359 UMP_CMP_kin_fam UMP-CMP kinase family. This subfamily of the adenylate kinase superfamily contains examples of UMP-CMP kinase, as well as others proteins with unknown specificity, some currently designated adenylate kinase. All known members are eukaryotic.
Probab=97.39 E-value=0.00014 Score=67.52 Aligned_cols=32 Identities=25% Similarity=0.618 Sum_probs=26.3
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
++|+|||||||||+|+.||..++.+ +++.+++
T Consensus 2 i~i~G~pGsGKst~a~~la~~~~~~--~is~~d~ 33 (183)
T TIGR01359 2 VFVLGGPGSGKGTQCAKIVENFGFT--HLSAGDL 33 (183)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCe--EEECChH
Confidence 7899999999999999999998754 4454443
No 356
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=97.39 E-value=0.00083 Score=67.91 Aligned_cols=79 Identities=19% Similarity=0.247 Sum_probs=47.8
Q ss_pred cCCCCc-ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC------C----------chhHHHHHHHHHHHHH
Q 010366 264 HNAPFR-NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------L----------GPQAVTKIHQLFDWAK 323 (512)
Q Consensus 264 ~~~p~~-~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~------~----------~~~~~~~l~~lf~~a~ 323 (512)
+|.|.+ .++|+||||||||+||..++... +.+.++++...... . .....+....+.....
T Consensus 50 GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~~a~~lGvd~~~l~v~~p~~~eq~l~~~~~li 129 (321)
T TIGR02012 50 GGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYARKLGVDIDNLLVSQPDTGEQALEIAETLV 129 (321)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 455544 68899999999999988875543 56677776433211 0 0011112222233333
Q ss_pred hcCCCcEEEEccchhhhhh
Q 010366 324 KSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 324 ~~~~~~vl~lDEid~l~~~ 342 (512)
+...+.+|+||-+..+.+.
T Consensus 130 ~~~~~~lIVIDSv~al~~~ 148 (321)
T TIGR02012 130 RSGAVDIIVVDSVAALVPK 148 (321)
T ss_pred hccCCcEEEEcchhhhccc
Confidence 3445789999999998764
No 357
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=97.39 E-value=0.0084 Score=63.37 Aligned_cols=35 Identities=31% Similarity=0.388 Sum_probs=26.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~ 303 (512)
+.++|+||+|+||||++..||..+ +..+..+++..
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~ 261 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDT 261 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCc
Confidence 479999999999999998887654 34566666544
No 358
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=97.38 E-value=0.0015 Score=67.19 Aligned_cols=24 Identities=29% Similarity=0.452 Sum_probs=21.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+|+||||||||++++.|++...
T Consensus 171 R~lIvgppGvGKTTLaK~Ian~I~ 194 (416)
T PRK09376 171 RGLIVAPPKAGKTVLLQNIANSIT 194 (416)
T ss_pred eEEEeCCCCCChhHHHHHHHHHHH
Confidence 489999999999999999998764
No 359
>COG1102 Cmk Cytidylate kinase [Nucleotide transport and metabolism]
Probab=97.38 E-value=0.00015 Score=64.80 Aligned_cols=28 Identities=46% Similarity=0.681 Sum_probs=26.0
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
+-+.|||||||||+|+.||+.+|.+++.
T Consensus 3 ItIsG~pGsG~TTva~~lAe~~gl~~vs 30 (179)
T COG1102 3 ITISGLPGSGKTTVARELAEHLGLKLVS 30 (179)
T ss_pred EEeccCCCCChhHHHHHHHHHhCCceee
Confidence 6789999999999999999999998874
No 360
>COG0529 CysC Adenylylsulfate kinase and related kinases [Inorganic ion transport and metabolism]
Probab=97.37 E-value=0.00079 Score=61.21 Aligned_cols=39 Identities=31% Similarity=0.444 Sum_probs=32.0
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCC
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 304 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~ 304 (512)
..+..+.|+|.||+||||+|.++...+ |...+.+++..+
T Consensus 21 ~~~~viW~TGLSGsGKSTiA~ale~~L~~~G~~~y~LDGDnv 62 (197)
T COG0529 21 QKGAVIWFTGLSGSGKSTIANALEEKLFAKGYHVYLLDGDNV 62 (197)
T ss_pred CCCeEEEeecCCCCCHHHHHHHHHHHHHHcCCeEEEecChhH
Confidence 344579999999999999999998876 677888887554
No 361
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=97.37 E-value=0.0021 Score=67.82 Aligned_cols=38 Identities=32% Similarity=0.472 Sum_probs=29.8
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 304 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~ 304 (512)
+|..++|+||+|+||||++..+|..+ +..+..+++..+
T Consensus 94 ~p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~~D~~ 134 (437)
T PRK00771 94 KPQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVAADTY 134 (437)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEecCCCC
Confidence 45689999999999999999998876 455666665443
No 362
>cd00227 CPT Chloramphenicol (Cm) phosphotransferase (CPT). Cm-inactivating enzyme; modifies the primary (C-3) hydroxyl of the antibiotic. Related structurally to shikimate kinase II.
Probab=97.37 E-value=0.00014 Score=67.34 Aligned_cols=33 Identities=21% Similarity=0.258 Sum_probs=28.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
+.++|+||||+||||+|+.|+..++.+++.++.
T Consensus 3 ~~i~l~G~~gsGKst~a~~l~~~~~~~~~~~~~ 35 (175)
T cd00227 3 RIIILNGGSSAGKSSIARALQSVLAEPWLHFGV 35 (175)
T ss_pred CEEEEECCCCCCHHHHHHHHHHhhCCCccccCc
Confidence 359999999999999999999998877765543
No 363
>PRK06217 hypothetical protein; Validated
Probab=97.37 E-value=0.00018 Score=67.11 Aligned_cols=31 Identities=19% Similarity=0.263 Sum_probs=28.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.|+|.|+||+||||+++.|+..++.+++..+
T Consensus 3 ~I~i~G~~GsGKSTla~~L~~~l~~~~~~~D 33 (183)
T PRK06217 3 RIHITGASGSGTTTLGAALAERLDIPHLDTD 33 (183)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEEEcC
Confidence 5999999999999999999999998877554
No 364
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=97.36 E-value=0.00022 Score=70.67 Aligned_cols=98 Identities=16% Similarity=0.203 Sum_probs=57.1
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---eEEEeC-CCCCC---
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTG-GDVAP--- 306 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---~~~v~~-~~~~~--- 306 (512)
...+++++.-.+.....+..++...... .++++|+||+|+|||++++++...+... ++.+.. .++..
T Consensus 99 ~~~sle~l~~~~~~~~~~~~~l~~~v~~------~~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E~~l~~~ 172 (270)
T PF00437_consen 99 KPFSLEDLGESGSIPEEIAEFLRSAVRG------RGNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPELRLPGP 172 (270)
T ss_dssp S--CHCCCCHTHHCHHHHHHHHHHCHHT------TEEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-S--SCS
T ss_pred ccccHhhccCchhhHHHHHHHHhhcccc------ceEEEEECCCccccchHHHHHhhhccccccceEEeccccceeeccc
Confidence 4446788877766666665555433211 1479999999999999999999887543 333331 11110
Q ss_pred ----Cc-hhHHHHHHHHHHHHHhcCCCcEEEEccchh
Q 010366 307 ----LG-PQAVTKIHQLFDWAKKSKRGLLLFIDEADA 338 (512)
Q Consensus 307 ----~~-~~~~~~l~~lf~~a~~~~~~~vl~lDEid~ 338 (512)
.. ......+..++..+.+.. |.+|+++|+-.
T Consensus 173 ~~~~~~~~~~~~~~~~~l~~~LR~~-pD~iiigEiR~ 208 (270)
T PF00437_consen 173 NQIQIQTRRDEISYEDLLKSALRQD-PDVIIIGEIRD 208 (270)
T ss_dssp SEEEEEEETTTBSHHHHHHHHTTS---SEEEESCE-S
T ss_pred ceEEEEeecCcccHHHHHHHHhcCC-CCcccccccCC
Confidence 00 011123445666666655 89999999975
No 365
>PRK13948 shikimate kinase; Provisional
Probab=97.35 E-value=0.00022 Score=66.38 Aligned_cols=34 Identities=29% Similarity=0.323 Sum_probs=30.7
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
++.+++|.|++|||||++++.||..++.+|+..+
T Consensus 9 ~~~~I~LiG~~GsGKSTvg~~La~~lg~~~iD~D 42 (182)
T PRK13948 9 PVTWVALAGFMGTGKSRIGWELSRALMLHFIDTD 42 (182)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHcCCCEEECC
Confidence 5578999999999999999999999999998554
No 366
>COG3854 SpoIIIAA ncharacterized protein conserved in bacteria [Function unknown]
Probab=97.34 E-value=0.0011 Score=62.75 Aligned_cols=23 Identities=48% Similarity=0.735 Sum_probs=21.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
+.|+.|||||||||+.+-+|+-+
T Consensus 139 ntLiigpP~~GKTTlLRdiaR~~ 161 (308)
T COG3854 139 NTLIIGPPQVGKTTLLRDIARLL 161 (308)
T ss_pred eeEEecCCCCChHHHHHHHHHHh
Confidence 69999999999999999998876
No 367
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=97.34 E-value=0.0011 Score=65.63 Aligned_cols=25 Identities=44% Similarity=0.579 Sum_probs=22.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+++|.||||+||||+.+.++..+.
T Consensus 112 ~~~~i~g~~g~GKttl~~~l~~~~~ 136 (270)
T TIGR02858 112 LNTLIISPPQCGKTTLLRDLARILS 136 (270)
T ss_pred eEEEEEcCCCCCHHHHHHHHhCccC
Confidence 5899999999999999999998864
No 368
>PRK08154 anaerobic benzoate catabolism transcriptional regulator; Reviewed
Probab=97.34 E-value=0.00038 Score=70.55 Aligned_cols=56 Identities=23% Similarity=0.376 Sum_probs=40.9
Q ss_pred hHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 245 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
++..+.+..++.........-.|...++|+|+||||||++++.||..+|.+|+.++
T Consensus 110 ~~~~~~~~~~l~~~~~~~~~~~~~~~I~l~G~~GsGKStvg~~La~~Lg~~~id~D 165 (309)
T PRK08154 110 PAQLARVRDALSGMLGAGRRAARRRRIALIGLRGAGKSTLGRMLAARLGVPFVELN 165 (309)
T ss_pred HHHHHHHHHHHHHHHhhhhhccCCCEEEEECCCCCCHHHHHHHHHHHcCCCEEeHH
Confidence 44445555555554433333345568999999999999999999999999998443
No 369
>smart00534 MUTSac ATPase domain of DNA mismatch repair MUTS family.
Probab=97.33 E-value=0.0029 Score=59.12 Aligned_cols=101 Identities=15% Similarity=0.104 Sum_probs=51.8
Q ss_pred eEEecCCCCchHHHHHHHHH-----HhCCCe--------------EEEeCCCCCC-CchhHHHHHHHHHHHHHhcCCCcE
Q 010366 271 MLFYGPPGTGKTMAARELAR-----KSGLDY--------------ALMTGGDVAP-LGPQAVTKIHQLFDWAKKSKRGLL 330 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~-----~l~~~~--------------~~v~~~~~~~-~~~~~~~~l~~lf~~a~~~~~~~v 330 (512)
++|+||.|+|||++.+.++- ..|.++ ..+...+... ..+.....+..+...+.....+.+
T Consensus 2 ~~ltG~N~~GKst~l~~i~~~~~la~~G~~v~a~~~~~~~~d~il~~~~~~d~~~~~~s~fs~~~~~l~~~l~~~~~~~l 81 (185)
T smart00534 2 VIITGPNMGGKSTYLRQVGLIVIMAQIGSFVPAESAELPVFDRIFTRIGASDSLAQGLSTFMVEMKETANILKNATENSL 81 (185)
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHHHhCCCeeehheEecccceEEEEeCCCCchhccccHHHHHHHHHHHHHHhCCCCeE
Confidence 78999999999999999972 233221 1122222111 111222233333333333335789
Q ss_pred EEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 331 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 331 l~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
+++||...-. ........+..++..+... .+..+|++|...
T Consensus 82 lllDEp~~g~-------d~~~~~~~~~~~l~~l~~~-~~~~iii~TH~~ 122 (185)
T smart00534 82 VLLDELGRGT-------STYDGVAIAAAVLEYLLEK-IGALTLFATHYH 122 (185)
T ss_pred EEEecCCCCC-------CHHHHHHHHHHHHHHHHhc-CCCeEEEEecHH
Confidence 9999997621 1112233344555544321 234556666554
No 370
>cd02020 CMPK Cytidine monophosphate kinase (CMPK) catalyzes the reversible phosphorylation of cytidine monophosphate (CMP) to produce cytidine diphosphate (CDP), using ATP as the preferred phosphoryl donor.
Probab=97.33 E-value=0.0002 Score=63.71 Aligned_cols=30 Identities=40% Similarity=0.625 Sum_probs=27.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
++|.|+||||||++|+.||..++.+++..+
T Consensus 2 I~i~G~~GsGKst~a~~la~~~~~~~~~~~ 31 (147)
T cd02020 2 IAIDGPAGSGKSTVAKLLAKKLGLPYLDTG 31 (147)
T ss_pred EEEECCCCCCHHHHHHHHHHHhCCceeccc
Confidence 689999999999999999999999987665
No 371
>PRK14527 adenylate kinase; Provisional
Probab=97.32 E-value=0.001 Score=62.38 Aligned_cols=30 Identities=40% Similarity=0.719 Sum_probs=26.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.-++++||||+|||++|+.||..++...+.
T Consensus 7 ~~i~i~G~pGsGKsT~a~~La~~~~~~~is 36 (191)
T PRK14527 7 KVVIFLGPPGAGKGTQAERLAQELGLKKLS 36 (191)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCCCC
Confidence 469999999999999999999998865543
No 372
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.30 E-value=0.036 Score=57.91 Aligned_cols=35 Identities=37% Similarity=0.616 Sum_probs=26.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~ 303 (512)
..++|+||+|+||||++..||..+ |..+..+++..
T Consensus 224 ~vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt 262 (432)
T PRK12724 224 KVVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDN 262 (432)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccc
Confidence 458899999999999999998654 34455555433
No 373
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=97.30 E-value=0.0002 Score=65.29 Aligned_cols=32 Identities=28% Similarity=0.422 Sum_probs=29.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.+++|+|++|+||||+.++||+.++.+|+-.+
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F~D~D 34 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPFIDTD 34 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCcccch
Confidence 46999999999999999999999999998665
No 374
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=97.29 E-value=0.00086 Score=66.32 Aligned_cols=92 Identities=15% Similarity=0.183 Sum_probs=54.0
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC---CeEEEeC-CCCCC------
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---DYALMTG-GDVAP------ 306 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~---~~~~v~~-~~~~~------ 306 (512)
+++++-..+.....+..++. .+.+.++|+||+|+||||+++++...+.. .++.+.. .++..
T Consensus 58 ~l~~lg~~~~~~~~l~~~~~---------~~~GlilisG~tGSGKTT~l~all~~i~~~~~~iitiEdp~E~~~~~~~q~ 128 (264)
T cd01129 58 DLEKLGLKPENLEIFRKLLE---------KPHGIILVTGPTGSGKTTTLYSALSELNTPEKNIITVEDPVEYQIPGINQV 128 (264)
T ss_pred CHHHcCCCHHHHHHHHHHHh---------cCCCEEEEECCCCCcHHHHHHHHHhhhCCCCCeEEEECCCceecCCCceEE
Confidence 45666555666666644431 12235999999999999999999777642 2344321 11110
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchh
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 338 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~ 338 (512)
............+..+.+.. |.+|+++|+..
T Consensus 129 ~v~~~~~~~~~~~l~~~lR~~-PD~i~vgEiR~ 160 (264)
T cd01129 129 QVNEKAGLTFARGLRAILRQD-PDIIMVGEIRD 160 (264)
T ss_pred EeCCcCCcCHHHHHHHHhccC-CCEEEeccCCC
Confidence 00010112344555566655 89999999965
No 375
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=97.29 E-value=0.0027 Score=61.55 Aligned_cols=37 Identities=27% Similarity=0.474 Sum_probs=27.0
Q ss_pred CCCC-cceEEecCCCCchHHHHHHHHHH---hCCCeEEEeC
Q 010366 265 NAPF-RNMLFYGPPGTGKTMAARELARK---SGLDYALMTG 301 (512)
Q Consensus 265 ~~p~-~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~ 301 (512)
|.|. ..++++||||||||+++..++.. .+.+.++++.
T Consensus 21 G~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~ 61 (234)
T PRK06067 21 GIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITT 61 (234)
T ss_pred CCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEc
Confidence 4443 46888999999999999999654 2556666554
No 376
>COG1936 Predicted nucleotide kinase (related to CMP and AMP kinases) [Nucleotide transport and metabolism]
Probab=97.28 E-value=0.00018 Score=65.14 Aligned_cols=30 Identities=27% Similarity=0.431 Sum_probs=26.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.++++|.|||||||+++.|+ .+|.+++.++
T Consensus 2 ~I~ITGTPGvGKTT~~~~L~-~lg~~~i~l~ 31 (180)
T COG1936 2 LIAITGTPGVGKTTVCKLLR-ELGYKVIELN 31 (180)
T ss_pred eEEEeCCCCCchHHHHHHHH-HhCCceeeHH
Confidence 48999999999999999999 8888888665
No 377
>PRK14530 adenylate kinase; Provisional
Probab=97.28 E-value=0.00024 Score=68.01 Aligned_cols=30 Identities=30% Similarity=0.584 Sum_probs=26.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|.||||+||||+++.||..++.+++.+
T Consensus 5 ~I~i~G~pGsGKsT~~~~La~~~~~~~i~~ 34 (215)
T PRK14530 5 RILLLGAPGAGKGTQSSNLAEEFGVEHVTT 34 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 599999999999999999999998776643
No 378
>PRK06547 hypothetical protein; Provisional
Probab=97.28 E-value=0.00027 Score=65.25 Aligned_cols=35 Identities=29% Similarity=0.468 Sum_probs=29.1
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.++..++++||||||||++|+.|+..++.+++.++
T Consensus 13 ~~~~~i~i~G~~GsGKTt~a~~l~~~~~~~~~~~d 47 (172)
T PRK06547 13 GGMITVLIDGRSGSGKTTLAGALAARTGFQLVHLD 47 (172)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHhCCCeeccc
Confidence 34457889999999999999999999887776554
No 379
>cd02021 GntK Gluconate kinase (GntK) catalyzes the phosphoryl transfer from ATP to gluconate. The resulting product gluconate-6-phoshate is an important precursor of gluconate metabolism. GntK acts as a dimmer composed of two identical subunits.
Probab=97.27 E-value=0.00023 Score=63.83 Aligned_cols=27 Identities=26% Similarity=0.592 Sum_probs=24.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
++|+|+||+||||+|+.++..++..++
T Consensus 2 i~l~G~~GsGKST~a~~l~~~~~~~~i 28 (150)
T cd02021 2 IVVMGVSGSGKSTVGKALAERLGAPFI 28 (150)
T ss_pred EEEEcCCCCCHHHHHHHHHhhcCCEEE
Confidence 789999999999999999999876554
No 380
>PF08303 tRNA_lig_kinase: tRNA ligase kinase domain; InterPro: IPR015966 This entry represents a kinase domain found in fungal tRNA ligases []. Please see the following relevant references: [, ].; GO: 0003972 RNA ligase (ATP) activity, 0005524 ATP binding, 0006388 tRNA splicing, via endonucleolytic cleavage and ligation
Probab=97.26 E-value=0.0099 Score=53.72 Aligned_cols=131 Identities=11% Similarity=0.124 Sum_probs=77.9
Q ss_pred ecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHH
Q 010366 274 YGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQR 353 (512)
Q Consensus 274 ~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~ 353 (512)
.+++||||||++.+|++-++- +-.+...++... .....+....+.+.... ..+||.|=-.... ..+
T Consensus 5 IAtiGCGKTTva~aL~~LFg~-wgHvQnDnI~~k--~~~~f~~~~l~~L~~~~-~~vViaDRNNh~~----------reR 70 (168)
T PF08303_consen 5 IATIGCGKTTVALALSNLFGE-WGHVQNDNITGK--RKPKFIKAVLELLAKDT-HPVVIADRNNHQK----------RER 70 (168)
T ss_pred ecCCCcCHHHHHHHHHHHcCC-CCccccCCCCCC--CHHHHHHHHHHHHhhCC-CCEEEEeCCCchH----------HHH
Confidence 589999999999999999874 555666566433 23344444555553223 5688888655532 333
Q ss_pred HHHHHHHHHcCC----CCCCEEEEEeeCCCCCCCHHH--------Hccccc--eeecCCCCHHHHHHHHHHHHHHHhhh
Q 010366 354 SALNALLFRTGD----QSKDIVLALATNRPGDLDSAV--------ADRIDE--VLEFPLPGQEERFKLLKLYLDKYIAQ 418 (512)
Q Consensus 354 ~~l~~ll~~~~~----~~~~viiI~ttN~~~~l~~al--------~~R~~~--~i~~~~p~~~er~~Il~~~l~~~~~~ 418 (512)
..+...+..+.. +..++.+|+-.=....-.+.+ +.|=|. .|.....+......|+..++..+..-
T Consensus 71 ~ql~~~~~~~~~~yl~~~~~~r~VaL~fv~~~~~~~i~~it~~RV~~RGDNHQTika~~~~~~~~~~Im~gFi~rfep~ 149 (168)
T PF08303_consen 71 KQLFEDVSQLKPDYLPYDTNVRFVALNFVHDDDLDEIRRITQDRVLARGDNHQTIKADSKDEKKVEGIMEGFIKRFEPV 149 (168)
T ss_pred HHHHHHHHHhcccccccCCCeEEEEEEccCCCCHHHHHHHHHHHHHhcCcCcceeecCCCCHHHHHHHHHHHHHhcCCC
Confidence 333333333321 334677777553333222332 235443 45666667788888999998886543
No 381
>TIGR01313 therm_gnt_kin carbohydrate kinase, thermoresistant glucokinase family. This model represents a subfamily of proteins that includes thermoresistant and thermosensitve isozymes of gluconate kinase (gluconokinase) in E. coli and other related proteins; members of this family are often named by similarity to the thermostable isozyme. These proteins show homology to shikimate kinases and adenylate kinases but not to gluconate kinases from the FGGY family of carbohydrate kinases.
Probab=97.25 E-value=0.00023 Score=64.90 Aligned_cols=32 Identities=31% Similarity=0.640 Sum_probs=25.9
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
++|+|||||||||+|+.++..++.+++ +..++
T Consensus 1 i~l~G~~GsGKSTla~~l~~~l~~~~v--~~D~~ 32 (163)
T TIGR01313 1 FVLMGVAGSGKSTIASALAHRLGAKFI--EGDDL 32 (163)
T ss_pred CEEECCCCCCHHHHHHHHHHhcCCeEE--eCccc
Confidence 578999999999999999999985554 44443
No 382
>PF10923 DUF2791: P-loop Domain of unknown function (DUF2791); InterPro: IPR021228 This is a family of proteins found in archaea and bacteria. Some of the proteins in this family are annotated as being methyl-accepting chemotaxis proteins and ATP/GTP binding proteins.
Probab=97.25 E-value=0.068 Score=55.92 Aligned_cols=50 Identities=16% Similarity=0.228 Sum_probs=34.0
Q ss_pred CCCcc-ccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHH
Q 010366 237 GFGDV-ILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 237 ~~~~v-vg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
+.+.+ ||.+...+.+..-+..++. ++. ..-++.|.-|+|||++.+.+...
T Consensus 22 Gl~~~~VGr~~e~~~l~~~l~~v~~---G~s--~~kfi~G~YGsGKTf~l~~i~~~ 72 (416)
T PF10923_consen 22 GLDHIAVGREREIEALDRDLDRVAD---GGS--SFKFIRGEYGSGKTFFLRLIRER 72 (416)
T ss_pred cCcceeechHHHHHHHHHHHHHHhC---CCC--eEEEEEeCCCCcHHHHHHHHHHH
Confidence 34444 7888888888665544432 221 24788999999999999888543
No 383
>CHL00195 ycf46 Ycf46; Provisional
Probab=97.25 E-value=0.025 Score=60.79 Aligned_cols=140 Identities=19% Similarity=0.277 Sum_probs=92.0
Q ss_pred HHHHHhcCC--CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeec
Q 010366 319 FDWAKKSKR--GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEF 396 (512)
Q Consensus 319 f~~a~~~~~--~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~ 396 (512)
+++.....+ +++++|.|++.++. .......+..+....... .+.+||.+.+ ..+++++.+-+ .++.+
T Consensus 71 l~~i~~~~~~~~~~~vl~d~h~~~~-------~~~~~r~l~~l~~~~~~~-~~~~i~~~~~--~~~p~el~~~~-~~~~~ 139 (489)
T CHL00195 71 LEFIEKLTPETPALFLLKDFNRFLN-------DISISRKLRNLSRILKTQ-PKTIIIIASE--LNIPKELKDLI-TVLEF 139 (489)
T ss_pred HHHHHhcCCCCCcEEEEecchhhhc-------chHHHHHHHHHHHHHHhC-CCEEEEEcCC--CCCCHHHHhce-eEEee
Confidence 334444343 68999999999872 123444455555444333 3455555542 34566665544 88899
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC
Q 010366 397 PLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG 476 (512)
Q Consensus 397 ~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~ 476 (512)
|.|+.+|+..++........ ..+++..++.++..+.|+|..+++.++..+...
T Consensus 140 ~lP~~~ei~~~l~~~~~~~~------------------------~~~~~~~~~~l~~~~~gls~~~~~~~~~~~~~~--- 192 (489)
T CHL00195 140 PLPTESEIKKELTRLIKSLN------------------------IKIDSELLENLTRACQGLSLERIRRVLSKIIAT--- 192 (489)
T ss_pred cCcCHHHHHHHHHHHHHhcC------------------------CCCCHHHHHHHHHHhCCCCHHHHHHHHHHHHHH---
Confidence 99999999999977664321 127888999999999999999999998653321
Q ss_pred CCCCccCHHHHHHHHHHHHHHH
Q 010366 477 SENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 477 ~~~~~it~e~~~~al~~~~~~~ 498 (512)
...++.+++...++.+....
T Consensus 193 --~~~~~~~~~~~i~~~k~q~~ 212 (489)
T CHL00195 193 --YKTIDENSIPLILEEKKQII 212 (489)
T ss_pred --cCCCChhhHHHHHHHHHHHH
Confidence 14577777766666554443
No 384
>cd01428 ADK Adenylate kinase (ADK) catalyzes the reversible phosphoryl transfer from adenosine triphosphates (ATP) to adenosine monophosphates (AMP) and to yield adenosine diphosphates (ADP). This enzyme is required for the biosynthesis of ADP and is essential for homeostasis of adenosine phosphates.
Probab=97.25 E-value=0.00026 Score=66.29 Aligned_cols=29 Identities=45% Similarity=0.737 Sum_probs=25.5
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
++|+||||+|||++|+.||..++.+++.+
T Consensus 2 I~i~G~pGsGKst~a~~La~~~~~~~i~~ 30 (194)
T cd01428 2 ILLLGPPGSGKGTQAERLAKKYGLPHIST 30 (194)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCeEEEC
Confidence 89999999999999999999988665543
No 385
>PF01583 APS_kinase: Adenylylsulphate kinase; InterPro: IPR002891 Protein phosphorylation, which plays a key role in most cellular activities, is a reversible process mediated by protein kinases and phosphoprotein phosphatases. Protein kinases catalyse the transfer of the gamma phosphate from nucleotide triphosphates (often ATP) to one or more amino acid residues in a protein substrate side chain, resulting in a conformational change affecting protein function. Phosphoprotein phosphatases catalyse the reverse process. Protein kinases fall into three broad classes, characterised with respect to substrate specificity []: Serine/threonine-protein kinases Tyrosine-protein kinases Dual specific protein kinases (e.g. MEK - phosphorylates both Thr and Tyr on target proteins) Protein kinase function has been evolutionarily conserved from Escherichia coli to human []. Protein kinases play a role in a multitude of cellular processes, including division, proliferation, apoptosis, and differentiation []. Phosphorylation usually results in a functional change of the target protein by changing enzyme activity, cellular location, or association with other proteins. The catalytic subunits of protein kinases are highly conserved, and several structures have been solved [], leading to large screens to develop kinase-specific inhibitors for the treatments of a number of diseases []. This domain contains an ATP binding P-loop motif [].; GO: 0005524 ATP binding, 0016301 kinase activity, 0016772 transferase activity, transferring phosphorus-containing groups, 0000103 sulfate assimilation; PDB: 1M7H_B 1M7G_B 3CR7_B 1D6J_A 2OFW_G 1X6V_B 1XNJ_A 1XJQ_B 2PEY_A 2PEZ_B ....
Probab=97.24 E-value=0.00075 Score=60.96 Aligned_cols=36 Identities=33% Similarity=0.559 Sum_probs=29.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDV 304 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~ 304 (512)
..+.|+|.||+|||++|++|...+ +.+.+.+++..+
T Consensus 3 ~vIwltGlsGsGKtTlA~~L~~~L~~~g~~~~~LDgD~l 41 (156)
T PF01583_consen 3 FVIWLTGLSGSGKTTLARALERRLFARGIKVYLLDGDNL 41 (156)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTS-EEEEEHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEecCcch
Confidence 358999999999999999998876 678888876544
No 386
>KOG1808 consensus AAA ATPase containing von Willebrand factor type A (vWA) domain [General function prediction only]
Probab=97.24 E-value=0.00048 Score=82.24 Aligned_cols=151 Identities=28% Similarity=0.347 Sum_probs=93.5
Q ss_pred cccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC---c--------h
Q 010366 241 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL---G--------P 309 (512)
Q Consensus 241 vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~---~--------~ 309 (512)
+|..+.+++.+..++......+ . .+||-||+|||||.+++.+|..+|..++.++....... . +
T Consensus 419 ~i~T~~vq~~la~~~~a~~~~~---~---pillqG~tssGKtsii~~la~~~g~~~vrinnhehtd~qeyig~y~~~~~g 492 (1856)
T KOG1808|consen 419 YIITPRVQKNLADLARAISSGK---F---PILLQGPTSSGKTSIIKELARATGKNIVRINNHEHTDLQEYIGTYVADDNG 492 (1856)
T ss_pred eeccHHHHHHHHHHHHHHhcCC---C---CeEEecCcCcCchhHHHHHHHHhccCceehhccccchHHHHHHhhhcCCCC
Confidence 5556666666666554443221 2 39999999999999999999999999998885543221 0 0
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHc---C--------CCCCCEEEEEeeCC
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRT---G--------DQSKDIVLALATNR 378 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~---~--------~~~~~viiI~ttN~ 378 (512)
...-.-..+...+ ..++.+|||+++.. ....-.+|+.++..- . ....++++++|-|.
T Consensus 493 ~l~freg~LV~Al---r~G~~~vlD~lnla---------~~dvL~aLnrllddnRel~ipe~~rlv~~h~~f~lfatqn~ 560 (1856)
T KOG1808|consen 493 DLVFREGVLVQAL---RNGDWIVLDELNLA---------PHDVLEALNRLLDDNRELFIPETQRLVKAHPEFMLFATQNP 560 (1856)
T ss_pred CeeeehhHHHHHH---HhCCEEEecccccc---------chHHHHHHHhhhhhhccccccccceeeccCcchhhhhhccC
Confidence 1000111122222 23889999999874 335556677776541 1 12345677777777
Q ss_pred CC------CCCHHHHccccceeecCCCCHHHHHHHHHH
Q 010366 379 PG------DLDSAVADRIDEVLEFPLPGQEERFKLLKL 410 (512)
Q Consensus 379 ~~------~l~~al~~R~~~~i~~~~p~~~er~~Il~~ 410 (512)
+. .+..+|++|| ..++|..-..++...|+..
T Consensus 561 ~~~y~grk~lsRa~~~rf-~e~~f~~~~e~e~~~i~~~ 597 (1856)
T KOG1808|consen 561 PGTYGGRKILSRALRNRF-IELHFDDIGEEELEEILEH 597 (1856)
T ss_pred ccccchhhhhhhcccccc-hhhhhhhcCchhhhhhhcc
Confidence 64 3456777888 5555555555555555543
No 387
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=97.24 E-value=0.0049 Score=57.44 Aligned_cols=117 Identities=15% Similarity=0.135 Sum_probs=67.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEe------------------------CCC-CC-C--CchhHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT------------------------GGD-VA-P--LGPQAVTKIHQ 317 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~------------------------~~~-~~-~--~~~~~~~~l~~ 317 (512)
..+++||++|.|||++|-.+|-.. |.++..+. ++. +. . ...........
T Consensus 23 g~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~~GE~~~l~~l~~v~~~~~g~~~~~~~~~~~e~~~~~~~ 102 (191)
T PRK05986 23 GLLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWSTGERNLLEFGGGVEFHVMGTGFTWETQDRERDIAAARE 102 (191)
T ss_pred CeEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCccCHHHHHhcCCCcEEEECCCCCcccCCCcHHHHHHHHH
Confidence 579999999999999999987553 33322221 111 00 0 00111223344
Q ss_pred HHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHcccccee
Q 010366 318 LFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVL 394 (512)
Q Consensus 318 lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i 394 (512)
.+..+.. ...+.+|+|||+-..+.-.-- . ...++..+...+.++=||+|... .+++++...|.+-
T Consensus 103 ~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli------~---~eevi~~L~~rp~~~evVlTGR~---~p~~Lie~ADlVT 170 (191)
T PRK05986 103 GWEEAKRMLADESYDLVVLDELTYALKYGYL------D---VEEVLEALNARPGMQHVVITGRG---APRELIEAADLVT 170 (191)
T ss_pred HHHHHHHHHhCCCCCEEEEehhhHHHHCCCc------c---HHHHHHHHHcCCCCCEEEEECCC---CCHHHHHhCchhe
Confidence 4554443 456899999999875432110 1 12233333446777788888754 5677777776665
Q ss_pred ecC
Q 010366 395 EFP 397 (512)
Q Consensus 395 ~~~ 397 (512)
++.
T Consensus 171 Em~ 173 (191)
T PRK05986 171 EMR 173 (191)
T ss_pred ecc
Confidence 554
No 388
>cd00267 ABC_ATPase ABC (ATP-binding cassette) transporter nucleotide-binding domain; ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. The nucleotide-binding domain shows the highest similarity between all members of the family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=97.20 E-value=0.003 Score=57.15 Aligned_cols=97 Identities=24% Similarity=0.295 Sum_probs=54.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC--eEEEeCCCCCC---------------CchhHHHHHHHHHHHHHhcCCCcEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD--YALMTGGDVAP---------------LGPQAVTKIHQLFDWAKKSKRGLLL 331 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~--~~~v~~~~~~~---------------~~~~~~~~l~~lf~~a~~~~~~~vl 331 (512)
..+.|.||+|+|||+++++++..+... -+.+++..+.. ..+.....+ .+..+.... |.++
T Consensus 26 ~~~~i~G~nGsGKStll~~l~g~~~~~~G~i~~~~~~~~~~~~~~~~~~i~~~~qlS~G~~~r~--~l~~~l~~~-~~i~ 102 (157)
T cd00267 26 EIVALVGPNGSGKSTLLRAIAGLLKPTSGEILIDGKDIAKLPLEELRRRIGYVPQLSGGQRQRV--ALARALLLN-PDLL 102 (157)
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCCCCccEEEECCEEcccCCHHHHHhceEEEeeCCHHHHHHH--HHHHHHhcC-CCEE
Confidence 468999999999999999998875421 23333322111 111111111 122222223 6799
Q ss_pred EEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 332 FIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 332 ~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
++||...= ........+..++..+... +..+|++|..
T Consensus 103 ilDEp~~~--------lD~~~~~~l~~~l~~~~~~--~~tii~~sh~ 139 (157)
T cd00267 103 LLDEPTSG--------LDPASRERLLELLRELAEE--GRTVIIVTHD 139 (157)
T ss_pred EEeCCCcC--------CCHHHHHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 99999752 2334555666666655322 2345556554
No 389
>PRK06696 uridine kinase; Validated
Probab=97.20 E-value=0.00076 Score=64.98 Aligned_cols=38 Identities=26% Similarity=0.180 Sum_probs=31.9
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA 305 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~ 305 (512)
+.-|.|.|+||+||||+|+.|+..+ |.+++.++..++.
T Consensus 22 ~~iI~I~G~sgsGKSTlA~~L~~~l~~~g~~v~~~~~Ddf~ 62 (223)
T PRK06696 22 PLRVAIDGITASGKTTFADELAEEIKKRGRPVIRASIDDFH 62 (223)
T ss_pred ceEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecccccc
Confidence 3478999999999999999999998 6677777766664
No 390
>cd03216 ABC_Carb_Monos_I This family represents the domain I of the carbohydrate uptake proteins that transport only monosaccharides (Monos). The Carb_Monos family is involved in the uptake of monosaccharides, such as pentoses (such as xylose, arabinose, and ribose) and hexoses (such as xylose, arabinose, and ribose), that cannot be broken down to simple sugars by hydrolysis. Pentoses include xylose, arabinose, and ribose. Important hexoses include glucose, galactose, and fructose. In members of the Carb_monos family, the single hydrophobic gene product forms a homodimer while the ABC protein represents a fusion of two nucleotide-binding domains. However, it is assumed that two copies of the ABC domains are present in the assembled transporter.
Probab=97.20 E-value=0.0034 Score=57.30 Aligned_cols=101 Identities=19% Similarity=0.185 Sum_probs=54.9
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCCCCCCc--------------hhHHHHHHHHHHHHHhcCCCcE
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAPLG--------------PQAVTKIHQLFDWAKKSKRGLL 330 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~~~~~~--------------~~~~~~l~~lf~~a~~~~~~~v 330 (512)
|...+.|.||+|+|||+|.+.++..... .-+.+++.++.... -+..+.-+-.+..+.- .+|.+
T Consensus 25 ~Ge~~~l~G~nGsGKSTLl~~i~G~~~~~~G~v~~~g~~~~~~~~~~~~~~~i~~~~qLS~G~~qrl~laral~-~~p~i 103 (163)
T cd03216 25 RGEVHALLGENGAGKSTLMKILSGLYKPDSGEILVDGKEVSFASPRDARRAGIAMVYQLSVGERQMVEIARALA-RNARL 103 (163)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCCCCCCeEEEECCEECCcCCHHHHHhcCeEEEEecCHHHHHHHHHHHHHh-cCCCE
Confidence 3346899999999999999999876531 12333332221100 0001111112222333 34789
Q ss_pred EEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 331 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 331 l~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
+++||-..- .....+..+..++..+... +..+|++|..
T Consensus 104 lllDEP~~~--------LD~~~~~~l~~~l~~~~~~--~~tiii~sh~ 141 (163)
T cd03216 104 LILDEPTAA--------LTPAEVERLFKVIRRLRAQ--GVAVIFISHR 141 (163)
T ss_pred EEEECCCcC--------CCHHHHHHHHHHHHHHHHC--CCEEEEEeCC
Confidence 999998652 2345566676777665322 3345555544
No 391
>PF13245 AAA_19: Part of AAA domain
Probab=97.19 E-value=0.00059 Score=53.96 Aligned_cols=23 Identities=43% Similarity=0.635 Sum_probs=17.0
Q ss_pred ceEEecCCCCchH-HHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKT-MAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT-~lA~alA~~l 292 (512)
.+++.|||||||| +++..++...
T Consensus 12 ~~vv~g~pGtGKT~~~~~~i~~l~ 35 (76)
T PF13245_consen 12 LFVVQGPPGTGKTTTLAARIAELL 35 (76)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 3666999999999 4555665554
No 392
>PRK03731 aroL shikimate kinase II; Reviewed
Probab=97.19 E-value=0.00039 Score=63.87 Aligned_cols=31 Identities=26% Similarity=0.429 Sum_probs=28.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.++|+|+||||||++++.||..++.+++..+
T Consensus 4 ~i~~~G~~GsGKst~~~~la~~lg~~~~d~D 34 (171)
T PRK03731 4 PLFLVGARGCGKTTVGMALAQALGYRFVDTD 34 (171)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEcc
Confidence 5899999999999999999999999987553
No 393
>PTZ00088 adenylate kinase 1; Provisional
Probab=97.18 E-value=0.00036 Score=67.46 Aligned_cols=31 Identities=32% Similarity=0.565 Sum_probs=27.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.++|.||||+||||+|+.||+.++.+++.+.
T Consensus 8 rIvl~G~PGsGK~T~a~~La~~~g~~~is~g 38 (229)
T PTZ00088 8 KIVLFGAPGVGKGTFAEILSKKENLKHINMG 38 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEECC
Confidence 4999999999999999999999987766543
No 394
>PRK13946 shikimate kinase; Provisional
Probab=97.18 E-value=0.00034 Score=65.29 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=29.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
..|+|+|+||||||++++.||+.+|.+|+..+
T Consensus 11 ~~I~l~G~~GsGKsti~~~LA~~Lg~~~id~D 42 (184)
T PRK13946 11 RTVVLVGLMGAGKSTVGRRLATMLGLPFLDAD 42 (184)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCeECcC
Confidence 47999999999999999999999999987554
No 395
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=97.17 E-value=0.0053 Score=56.44 Aligned_cols=34 Identities=32% Similarity=0.400 Sum_probs=27.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 303 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~ 303 (512)
.++++||||+|||+++..+|..+ +..+..+++..
T Consensus 2 ~~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~~D~ 38 (173)
T cd03115 2 VILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVAADT 38 (173)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEEcCC
Confidence 37899999999999999998775 56677777654
No 396
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=97.17 E-value=0.0013 Score=68.23 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.9
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+..+++.||.|||||++.++|...+.
T Consensus 22 ~~~~fv~G~~GtGKs~l~~~i~~~~~ 47 (364)
T PF05970_consen 22 GLNFFVTGPAGTGKSFLIKAIIDYLR 47 (364)
T ss_pred CcEEEEEcCCCCChhHHHHHHHHHhc
Confidence 35799999999999999999987764
No 397
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.17 E-value=0.002 Score=66.59 Aligned_cols=23 Identities=43% Similarity=0.577 Sum_probs=21.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+++.|.||||||.+|-.++..+
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l 25 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKEL 25 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHh
Confidence 48999999999999999999988
No 398
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=97.16 E-value=0.0055 Score=60.89 Aligned_cols=37 Identities=35% Similarity=0.447 Sum_probs=28.1
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
.+++.++|+||||+||||++..+|..+ +..+..+++.
T Consensus 70 ~~~~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~~D 109 (272)
T TIGR00064 70 NKPNVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAAGD 109 (272)
T ss_pred CCCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeCC
Confidence 345678999999999999999998776 4455555543
No 399
>PRK03846 adenylylsulfate kinase; Provisional
Probab=97.15 E-value=0.0039 Score=58.81 Aligned_cols=37 Identities=27% Similarity=0.376 Sum_probs=28.8
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
.++..+.|+|+||+|||++++.|+..+ +...+.+++.
T Consensus 22 ~~~~~i~i~G~~GsGKSTla~~l~~~l~~~~~~~~~ld~d 61 (198)
T PRK03846 22 HKGVVLWFTGLSGSGKSTVAGALEEALHELGVSTYLLDGD 61 (198)
T ss_pred CCCEEEEEECCCCCCHHHHHHHHHHHHHhCCCCEEEEcCE
Confidence 344579999999999999999999876 3445666543
No 400
>PRK05057 aroK shikimate kinase I; Reviewed
Probab=97.15 E-value=0.00042 Score=63.95 Aligned_cols=33 Identities=30% Similarity=0.600 Sum_probs=29.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
.+++|.||+|+|||++++.+|..++.+++..+.
T Consensus 5 ~~I~liG~~GaGKStl~~~La~~l~~~~vd~D~ 37 (172)
T PRK05057 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFYDSDQ 37 (172)
T ss_pred CEEEEECCCCcCHHHHHHHHHHHcCCcEEECCc
Confidence 469999999999999999999999988876553
No 401
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=97.14 E-value=0.00081 Score=62.85 Aligned_cols=69 Identities=16% Similarity=0.183 Sum_probs=41.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCC-CC----C----------CchhHHHHHHHHHHHHHhcCCCcEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGD-VA----P----------LGPQAVTKIHQLFDWAKKSKRGLLL 331 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~-~~----~----------~~~~~~~~l~~lf~~a~~~~~~~vl 331 (512)
..++|.||+|+||||++++++..+.. ..+.+.... +. . ...........++..+.+.. |.++
T Consensus 26 ~~i~I~G~tGSGKTTll~aL~~~i~~~~~~i~ied~~E~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~lR~~-pd~i 104 (186)
T cd01130 26 KNILISGGTGSGKTTLLNALLAFIPPDERIITIEDTAELQLPHPNWVRLVTRPGNVEGSGEVTMADLLRSALRMR-PDRI 104 (186)
T ss_pred CEEEEECCCCCCHHHHHHHHHhhcCCCCCEEEECCccccCCCCCCEEEEEEecCCCCCCCccCHHHHHHHHhccC-CCEE
Confidence 46999999999999999999987642 222222110 00 0 00001112344555555555 7899
Q ss_pred EEccchh
Q 010366 332 FIDEADA 338 (512)
Q Consensus 332 ~lDEid~ 338 (512)
+++|+-.
T Consensus 105 ~igEir~ 111 (186)
T cd01130 105 IVGEVRG 111 (186)
T ss_pred EEEccCc
Confidence 9999964
No 402
>cd03243 ABC_MutS_homologs The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, and recognition of specific DNA stru
Probab=97.14 E-value=0.0038 Score=59.10 Aligned_cols=21 Identities=33% Similarity=0.506 Sum_probs=19.5
Q ss_pred cceEEecCCCCchHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA 289 (512)
..++|+||.|+|||++.+.++
T Consensus 30 ~~~~l~G~Ng~GKStll~~i~ 50 (202)
T cd03243 30 RLLLITGPNMGGKSTYLRSIG 50 (202)
T ss_pred eEEEEECCCCCccHHHHHHHH
Confidence 359999999999999999998
No 403
>cd00984 DnaB_C DnaB helicase C terminal domain. The hexameric helicase DnaB unwinds the DNA duplex at the chromosome replication fork. Although the mechanism by which DnaB both couples ATP hydrolysis to translocation along DNA and denatures the duplex is unknown, a change in the quaternary structure of the protein involving dimerization of the N-terminal domain has been observed and may occur during the enzymatic cycle. This C-terminal domain contains an ATP-binding site and is therefore probably the site of ATP hydrolysis.
Probab=97.13 E-value=0.004 Score=60.51 Aligned_cols=33 Identities=21% Similarity=0.254 Sum_probs=26.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~ 301 (512)
.-++|.||||+|||+++..++... +.++++++.
T Consensus 14 ~l~lI~G~~G~GKT~~~~~~~~~~~~~~g~~vly~s~ 50 (242)
T cd00984 14 DLIIIAARPSMGKTAFALNIAENIAKKQGKPVLFFSL 50 (242)
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhCCCceEEEeC
Confidence 468999999999999998886543 677777774
No 404
>PLN02200 adenylate kinase family protein
Probab=97.13 E-value=0.00045 Score=67.07 Aligned_cols=35 Identities=23% Similarity=0.459 Sum_probs=28.5
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
+..++++|||||||||+|+.||..+|.+ +++.+++
T Consensus 43 ~~ii~I~G~PGSGKsT~a~~La~~~g~~--his~gdl 77 (234)
T PLN02200 43 PFITFVLGGPGSGKGTQCEKIVETFGFK--HLSAGDL 77 (234)
T ss_pred CEEEEEECCCCCCHHHHHHHHHHHhCCe--EEEccHH
Confidence 3468999999999999999999998765 4555554
No 405
>cd02022 DPCK Dephospho-coenzyme A kinase (DPCK, EC 2.7.1.24) catalyzes the phosphorylation of dephosphocoenzyme A (dCoA) to yield CoA, which is the final step in CoA biosynthesis.
Probab=97.13 E-value=0.0015 Score=60.71 Aligned_cols=28 Identities=25% Similarity=0.309 Sum_probs=23.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
+.|+|+|||||||+++.+++ +|.+++..
T Consensus 2 i~itG~~gsGKst~~~~l~~-~g~~~i~~ 29 (179)
T cd02022 2 IGLTGGIGSGKSTVAKLLKE-LGIPVIDA 29 (179)
T ss_pred EEEECCCCCCHHHHHHHHHH-CCCCEEec
Confidence 78999999999999999998 77665433
No 406
>PRK02496 adk adenylate kinase; Provisional
Probab=97.13 E-value=0.0004 Score=64.64 Aligned_cols=30 Identities=33% Similarity=0.541 Sum_probs=26.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|.||||+|||++++.||..++.+.+.+
T Consensus 3 ~i~i~G~pGsGKst~a~~la~~~~~~~i~~ 32 (184)
T PRK02496 3 RLIFLGPPGAGKGTQAVVLAEHLHIPHIST 32 (184)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEEh
Confidence 489999999999999999999998776644
No 407
>TIGR01420 pilT_fam pilus retraction protein PilT. This model represents the PilT subfamily of proteins related to GspE, a protein involved in type II secretion (also called the General Secretion Pathway). PilT is an apparent cytosolic ATPase associated with type IV pilus systems. It is not required for pilin biogenesis, but is required for twitching motility and social gliding behaviors, shown in some species, powered by pilus retraction. Members of this family may be found in some species that type IV pili but have related structures for DNA uptake and natural transformation.
Probab=97.12 E-value=0.00074 Score=69.46 Aligned_cols=68 Identities=13% Similarity=0.133 Sum_probs=40.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC----CeEEEeCC-CCC--C--------CchhHHHHHHHHHHHHHhcCCCcEEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL----DYALMTGG-DVA--P--------LGPQAVTKIHQLFDWAKKSKRGLLLFI 333 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~----~~~~v~~~-~~~--~--------~~~~~~~~l~~lf~~a~~~~~~~vl~l 333 (512)
+.++|+||+|+||||+.+++...+.. .++.+... ++. . ..+.....+...+..+.+.. |.+|++
T Consensus 123 g~ili~G~tGSGKTT~l~al~~~i~~~~~~~i~tiEdp~E~~~~~~~~~i~q~evg~~~~~~~~~l~~~lr~~-pd~i~v 201 (343)
T TIGR01420 123 GLILVTGPTGSGKSTTLASMIDYINKNAAGHIITIEDPIEYVHRNKRSLINQREVGLDTLSFANALRAALRED-PDVILI 201 (343)
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhCcCCCCEEEEEcCChhhhccCccceEEccccCCCCcCHHHHHHHhhccC-CCEEEE
Confidence 46999999999999999999887642 22222111 110 0 00110112344455555555 889999
Q ss_pred ccch
Q 010366 334 DEAD 337 (512)
Q Consensus 334 DEid 337 (512)
||+-
T Consensus 202 gEir 205 (343)
T TIGR01420 202 GEMR 205 (343)
T ss_pred eCCC
Confidence 9995
No 408
>PF08433 KTI12: Chromatin associated protein KTI12 ; InterPro: IPR013641 This is a family of chromatin associated proteins which interact with the Elongator complex, a component of the elongating form of RNA polymerase II []. The Elongator complex has histone acetyltransferase activity. ; PDB: 3ADB_B 3ADC_B 3A4M_B 3A4N_B 3AM1_A 3A4L_B 3ADD_A.
Probab=97.12 E-value=0.0039 Score=61.75 Aligned_cols=82 Identities=17% Similarity=0.295 Sum_probs=42.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCC----CC-chhHHHHH----HHHHHHHHhcCCCcEEEEccch
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA----PL-GPQAVTKI----HQLFDWAKKSKRGLLLFIDEAD 337 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~----~~-~~~~~~~l----~~lf~~a~~~~~~~vl~lDEid 337 (512)
-++|+|.||+|||++|+.|+..+ +..++.++...+. .+ ....++.+ ...+..+. ....||++|+..
T Consensus 3 Liil~G~P~SGKTt~a~~L~~~~~~~~~~v~~i~~~~~~~~~~~y~~~~~Ek~~R~~l~s~v~r~l--s~~~iVI~Dd~n 80 (270)
T PF08433_consen 3 LIILCGLPCSGKTTRAKELKKYLEEKGKEVVIISDDSLGIDRNDYADSKKEKEARGSLKSAVERAL--SKDTIVILDDNN 80 (270)
T ss_dssp EEEEE--TTSSHHHHHHHHHHHHHHTT--EEEE-THHHH-TTSSS--GGGHHHHHHHHHHHHHHHH--TT-SEEEE-S--
T ss_pred EEEEEcCCCCcHHHHHHHHHHHHHhcCCEEEEEcccccccchhhhhchhhhHHHHHHHHHHHHHhh--ccCeEEEEeCCc
Confidence 38999999999999999998875 4566666632221 11 22223333 33333333 335799999998
Q ss_pred hhhhhcccCCCCHHHHHHHHHHHHHc
Q 010366 338 AFLCERNKTYMSEAQRSALNALLFRT 363 (512)
Q Consensus 338 ~l~~~~~~~~~~~~~~~~l~~ll~~~ 363 (512)
.+- ..+.-+..+-...
T Consensus 81 YiK----------g~RYelyclAr~~ 96 (270)
T PF08433_consen 81 YIK----------GMRYELYCLARAY 96 (270)
T ss_dssp -SH----------HHHHHHHHHHHHT
T ss_pred hHH----------HHHHHHHHHHHHc
Confidence 852 3455555555444
No 409
>cd02019 NK Nucleoside/nucleotide kinase (NK) is a protein superfamily consisting of multiple families of enzymes that share structural similarity and are functionally related to the catalysis of the reversible phosphate group transfer from nucleoside triphosphates to nucleosides/nucleotides, nucleoside monophosphates, or sugars. Members of this family play a wide variety of essential roles in nucleotide metabolism, the biosynthesis of coenzymes and aromatic compounds, as well as the metabolism of sugar and sulfate.
Probab=97.12 E-value=0.00074 Score=52.27 Aligned_cols=29 Identities=28% Similarity=0.526 Sum_probs=23.4
Q ss_pred eEEecCCCCchHHHHHHHHHHh-CCCeEEE
Q 010366 271 MLFYGPPGTGKTMAARELARKS-GLDYALM 299 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l-~~~~~~v 299 (512)
+.+.|+||+|||++++.++..+ +.++..+
T Consensus 2 i~i~G~~gsGKst~~~~l~~~l~~~~~~~i 31 (69)
T cd02019 2 IAITGGSGSGKSTVAKKLAEQLGGRSVVVL 31 (69)
T ss_pred EEEECCCCCCHHHHHHHHHHHhcCCCEEEE
Confidence 6789999999999999999986 2344444
No 410
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=97.11 E-value=0.0091 Score=54.85 Aligned_cols=116 Identities=16% Similarity=0.142 Sum_probs=66.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEe---CC----C-----------------CC--C-CchhHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMT---GG----D-----------------VA--P-LGPQAVTKIHQLF 319 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~---~~----~-----------------~~--~-~~~~~~~~l~~lf 319 (512)
-+.+|+++|.|||+.|-.+|-.. |.++..+. +. + +. . ............+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~~~~GE~~~l~~~~~~~~~~g~g~~~~~~~~~~~~~~~~~~~ 86 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGAWPNGERAAFEPHGVEFQVMGTGFTWETQNREADTAIAKAAW 86 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCcccChHHHHHhcCcEEEECCCCCeecCCCcHHHHHHHHHHH
Confidence 48899999999999999987553 44443221 11 1 00 0 0001112234444
Q ss_pred HHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeec
Q 010366 320 DWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEF 396 (512)
Q Consensus 320 ~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~ 396 (512)
..++. ...+.+|+|||+-..+.-.-- + . ..++..+...+.++=+|+|... .++.++...|.+-++
T Consensus 87 ~~a~~~l~~~~~DlvVLDEi~~A~~~gli---~---~---~~v~~lL~~rp~~~evVlTGR~---~p~~l~e~AD~VTEm 154 (173)
T TIGR00708 87 QHAKEMLADPELDLVLLDELTYALKYGYL---D---V---EEVVEALQERPGHQHVIITGRG---CPQDLLELADLVTEM 154 (173)
T ss_pred HHHHHHHhcCCCCEEEehhhHHHHHCCCc---C---H---HHHHHHHHhCCCCCEEEEECCC---CCHHHHHhCceeeee
Confidence 44443 456899999999875332110 0 1 1233333446777788888754 467777777766555
Q ss_pred C
Q 010366 397 P 397 (512)
Q Consensus 397 ~ 397 (512)
.
T Consensus 155 ~ 155 (173)
T TIGR00708 155 R 155 (173)
T ss_pred c
Confidence 3
No 411
>TIGR01360 aden_kin_iso1 adenylate kinase, isozyme 1 subfamily. Members of this family are adenylate kinase, EC 2.7.4.3. This clade is found only in eukaryotes and includes human adenylate kinase isozyme 1 (myokinase). Within the adenylate kinase superfamily, this set appears specifically closely related to a subfamily of eukaryotic UMP-CMP kinases (TIGR01359), rather than to the large clade of bacterial, archaeal, and eukaryotic adenylate kinase family members in TIGR01351.
Probab=97.11 E-value=0.00048 Score=64.06 Aligned_cols=29 Identities=24% Similarity=0.461 Sum_probs=25.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
-++|.|||||||||+++.++..+|...+.
T Consensus 5 ii~i~G~~GsGKsTl~~~l~~~~g~~~~~ 33 (188)
T TIGR01360 5 IIFIVGGPGSGKGTQCEKIVEKYGFTHLS 33 (188)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEe
Confidence 58999999999999999999998765443
No 412
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=97.09 E-value=0.0058 Score=59.40 Aligned_cols=37 Identities=24% Similarity=0.382 Sum_probs=26.0
Q ss_pred cCCCC-cceEEecCCCCchHHHHHHHHHH---hCCCeEEEe
Q 010366 264 HNAPF-RNMLFYGPPGTGKTMAARELARK---SGLDYALMT 300 (512)
Q Consensus 264 ~~~p~-~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~ 300 (512)
+|.|+ ..+|++||||||||+++..++.. -|.+.++++
T Consensus 16 GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs 56 (237)
T TIGR03877 16 GGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVA 56 (237)
T ss_pred CCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEE
Confidence 34443 46889999999999999876543 255555555
No 413
>PF13238 AAA_18: AAA domain; PDB: 3IIK_A 3IIJ_A 3IIL_A 1RKB_A 3IIM_A 2AXP_A 3KB2_A 1KHT_A 1NKS_A 3H86_C ....
Probab=97.08 E-value=0.0004 Score=60.02 Aligned_cols=22 Identities=45% Similarity=0.665 Sum_probs=20.9
Q ss_pred eEEecCCCCchHHHHHHHHHHh
Q 010366 271 MLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l 292 (512)
|+|.|+|||||||+|+.|+..+
T Consensus 1 I~i~G~~GsGKtTia~~L~~~~ 22 (129)
T PF13238_consen 1 IGISGIPGSGKTTIAKELAERL 22 (129)
T ss_dssp EEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEECCCCCCHHHHHHHHHHHH
Confidence 6899999999999999999987
No 414
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=97.08 E-value=0.0014 Score=66.07 Aligned_cols=69 Identities=17% Similarity=0.281 Sum_probs=43.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC-----CCeEEEeCC-CCC----C---C-chhHHHHHHHHHHHHHhcCCCcEEEEc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGG-DVA----P---L-GPQAVTKIHQLFDWAKKSKRGLLLFID 334 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v~~~-~~~----~---~-~~~~~~~l~~lf~~a~~~~~~~vl~lD 334 (512)
++++++||+|+||||+++++...+. ..++.+... ++. + . .......+..++..+.+.. |..|++.
T Consensus 133 ~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~El~~~~~~~v~~~~~~~~~~~~~~l~~aLR~~-pD~iivG 211 (299)
T TIGR02782 133 KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRELQCAAPNVVQLRTSDDAISMTRLLKATLRLR-PDRIIVG 211 (299)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchhhcCCCCCEEEEEecCCCCCHHHHHHHHhcCC-CCEEEEe
Confidence 4799999999999999999998862 223332211 100 0 0 0000113455667777766 8899999
Q ss_pred cchh
Q 010366 335 EADA 338 (512)
Q Consensus 335 Eid~ 338 (512)
|+-.
T Consensus 212 EiR~ 215 (299)
T TIGR02782 212 EVRG 215 (299)
T ss_pred ccCC
Confidence 9964
No 415
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=97.07 E-value=0.041 Score=55.94 Aligned_cols=35 Identities=34% Similarity=0.376 Sum_probs=26.9
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++..++|+||+|+||||++..||..+ +..+..+++
T Consensus 113 ~~~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~~ 150 (318)
T PRK10416 113 KPFVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAAG 150 (318)
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEec
Confidence 34678999999999999999998876 344444444
No 416
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=97.07 E-value=0.00065 Score=68.82 Aligned_cols=69 Identities=14% Similarity=0.237 Sum_probs=43.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC-----CCeEEEeC-CCCC----C---CchhHHHHHHHHHHHHHhcCCCcEEEEcc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG-----LDYALMTG-GDVA----P---LGPQAVTKIHQLFDWAKKSKRGLLLFIDE 335 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v~~-~~~~----~---~~~~~~~~l~~lf~~a~~~~~~~vl~lDE 335 (512)
.+++++||+|+||||++++|+..+. ..++.+.. .++. . ......-....++..+.+.+ |..|++.|
T Consensus 145 ~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El~~~~~n~v~l~~~~~~~~~~lv~~aLR~~-PD~IivGE 223 (323)
T PRK13833 145 LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEIQCAAENAVALHTSDTVDMARLLKSTMRLR-PDRIIVGE 223 (323)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCcccccCCCCEEEeccCCCcCHHHHHHHHhCCC-CCEEEEee
Confidence 4799999999999999999998762 22333221 1111 0 00001112455666666665 88999999
Q ss_pred chh
Q 010366 336 ADA 338 (512)
Q Consensus 336 id~ 338 (512)
+-.
T Consensus 224 iRg 226 (323)
T PRK13833 224 VRD 226 (323)
T ss_pred cCC
Confidence 954
No 417
>TIGR01351 adk adenylate kinases. Adenylate kinase (EC 2.7.4.3) converts ATP + AMP to ADP + ADP, that is, uses ATP as a phosphate donor for AMP. Most members of this family are known or believed to be adenylate kinase. However, some members accept other nucleotide triphosphates as donors, may be unable to use ATP, and may fail to complement adenylate kinase mutants. An example of a nucleoside-triphosphate--adenylate kinase (EC 2.7.4.10) is a GTP:AMP phosphotransferase. This family is designated subfamily rather than equivalog for this reason.
Probab=97.07 E-value=0.00048 Score=65.68 Aligned_cols=29 Identities=38% Similarity=0.701 Sum_probs=25.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
++|+||||+||||+|+.||..++.+++.+
T Consensus 2 I~i~G~pGsGKsT~a~~La~~~g~~~is~ 30 (210)
T TIGR01351 2 LVLLGPPGSGKGTQAKRIAEKYGLPHIST 30 (210)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCCeeeh
Confidence 89999999999999999999988766543
No 418
>cd03287 ABC_MSH3_euk MutS3 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=97.07 E-value=0.0054 Score=58.97 Aligned_cols=22 Identities=27% Similarity=0.324 Sum_probs=19.8
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
..++|+||.|+|||++.+.++.
T Consensus 32 ~~~~itG~N~~GKStll~~i~~ 53 (222)
T cd03287 32 YCQIITGPNMGGKSSYIRQVAL 53 (222)
T ss_pred cEEEEECCCCCCHHHHHHHHHH
Confidence 3589999999999999999976
No 419
>cd03280 ABC_MutS2 MutS2 homologs in bacteria and eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family also possess a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clamps, a
Probab=97.07 E-value=0.0051 Score=58.14 Aligned_cols=20 Identities=30% Similarity=0.577 Sum_probs=19.0
Q ss_pred ceEEecCCCCchHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA 289 (512)
.++|+||.|+|||++.+.++
T Consensus 30 ~~~ltG~Ng~GKStll~~i~ 49 (200)
T cd03280 30 VLVITGPNAGGKTVTLKTLG 49 (200)
T ss_pred EEEEECCCCCChHHHHHHHH
Confidence 59999999999999999987
No 420
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=97.06 E-value=0.0052 Score=60.60 Aligned_cols=34 Identities=21% Similarity=0.242 Sum_probs=25.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH---hCCCeEEEeCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARK---SGLDYALMTGG 302 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~~ 302 (512)
..++++||||||||+++..+|.. .|.+.++++..
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45888999999999999988654 25566666643
No 421
>PRK13808 adenylate kinase; Provisional
Probab=97.06 E-value=0.0033 Score=63.83 Aligned_cols=30 Identities=30% Similarity=0.614 Sum_probs=26.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.|+|+||||+|||++++.||..++.+++.+
T Consensus 2 rIiv~GpPGSGK~T~a~~LA~~ygl~~is~ 31 (333)
T PRK13808 2 RLILLGPPGAGKGTQAQRLVQQYGIVQLST 31 (333)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCceecc
Confidence 489999999999999999999988755544
No 422
>PF10443 RNA12: RNA12 protein; InterPro: IPR018850 Mitochondrial escape protein 2 (also known as RNA12) plays a role in maintaining the mitochondrial genome and in controlling mtDNA escape [, ]. It is also involved in the regulation of mtDNA nucleotide structure and number []. Additionally, this protein have a dispensable role in the early maturation of pre-rRNA [].
Probab=97.06 E-value=0.027 Score=58.60 Aligned_cols=81 Identities=14% Similarity=0.089 Sum_probs=47.9
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC--CCCCCHHHHccccceeecCCCCHHHHHH
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR--PGDLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~--~~~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
.||+||.|..-. .. .......|...-..+-...---+|++|++. ...|..++.+|.-..|.+...+++.-+.
T Consensus 150 PVVVIdnF~~k~---~~---~~~iy~~laeWAa~Lv~~nIAHVIFlT~dv~~~k~LskaLPn~vf~tI~L~Das~~~Ak~ 223 (431)
T PF10443_consen 150 PVVVIDNFLHKA---EE---NDFIYDKLAEWAASLVQNNIAHVIFLTDDVSYSKPLSKALPNRVFKTISLSDASPESAKQ 223 (431)
T ss_pred CEEEEcchhccC---cc---cchHHHHHHHHHHHHHhcCccEEEEECCCCchhhhHHHhCCCCceeEEeecCCCHHHHHH
Confidence 388999996521 11 112222222222222122222344445443 4567788888776999999999999999
Q ss_pred HHHHHHHHH
Q 010366 407 LLKLYLDKY 415 (512)
Q Consensus 407 Il~~~l~~~ 415 (512)
.+..++...
T Consensus 224 yV~~~L~~~ 232 (431)
T PF10443_consen 224 YVLSQLDED 232 (431)
T ss_pred HHHHHhccc
Confidence 988888654
No 423
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=97.05 E-value=0.0025 Score=58.69 Aligned_cols=24 Identities=29% Similarity=0.508 Sum_probs=18.2
Q ss_pred cceEEecCCCCchHH-HHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTM-AARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~-lA~alA~~l 292 (512)
+++++.||+|||||+ ++..+...+
T Consensus 25 ~~~~i~~~~GsGKT~~~~~~~~~~~ 49 (201)
T smart00487 25 RDVILAAPTGSGKTLAALLPALEAL 49 (201)
T ss_pred CcEEEECCCCCchhHHHHHHHHHHh
Confidence 369999999999999 455554443
No 424
>COG2874 FlaH Predicted ATPases involved in biogenesis of archaeal flagella [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=97.05 E-value=0.0043 Score=58.29 Aligned_cols=117 Identities=23% Similarity=0.266 Sum_probs=63.0
Q ss_pred cCCCCcc-eEEecCCCCchHHHHHHHHHHh---CCCeEEEe----------------------------------CCCCC
Q 010366 264 HNAPFRN-MLFYGPPGTGKTMAARELARKS---GLDYALMT----------------------------------GGDVA 305 (512)
Q Consensus 264 ~~~p~~~-vLL~GppGtGKT~lA~alA~~l---~~~~~~v~----------------------------------~~~~~ 305 (512)
+|.|.++ +++-|+.|||||.+++.++.-+ +....+++ ...+.
T Consensus 23 GGiP~GsL~lIEGd~~tGKSvLsqr~~YG~L~~g~~v~yvsTe~T~refi~qm~sl~ydv~~~~l~G~l~~~~~~~~~~~ 102 (235)
T COG2874 23 GGIPVGSLILIEGDNGTGKSVLSQRFAYGFLMNGYRVTYVSTELTVREFIKQMESLSYDVSDFLLSGRLLFFPVNLEPVN 102 (235)
T ss_pred CCCccCeEEEEECCCCccHHHHHHHHHHHHHhCCceEEEEEechhHHHHHHHHHhcCCCchHHHhcceeEEEEecccccc
Confidence 4456555 6778999999999999987543 22222222 11111
Q ss_pred CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCC-CCEEEEEeeCCCCCCCH
Q 010366 306 PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS-KDIVLALATNRPGDLDS 384 (512)
Q Consensus 306 ~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~-~~viiI~ttN~~~~l~~ 384 (512)
.........+..+.+..+.+ ...||+||-+..+.... ....++.++..+.... .+-+||+| -+|..++.
T Consensus 103 ~~~~~~~~~L~~l~~~~k~~-~~dViIIDSls~~~~~~--------~~~~vl~fm~~~r~l~d~gKvIilT-vhp~~l~e 172 (235)
T COG2874 103 WGRRSARKLLDLLLEFIKRW-EKDVIIIDSLSAFATYD--------SEDAVLNFMTFLRKLSDLGKVIILT-VHPSALDE 172 (235)
T ss_pred cChHHHHHHHHHHHhhHHhh-cCCEEEEecccHHhhcc--------cHHHHHHHHHHHHHHHhCCCEEEEE-eChhhcCH
Confidence 11122333455555555544 47899999998875322 1112233333322111 22234444 46677888
Q ss_pred HHHccc
Q 010366 385 AVADRI 390 (512)
Q Consensus 385 al~~R~ 390 (512)
+++.|+
T Consensus 173 ~~~~ri 178 (235)
T COG2874 173 DVLTRI 178 (235)
T ss_pred HHHHHH
Confidence 777765
No 425
>PRK09354 recA recombinase A; Provisional
Probab=97.05 E-value=0.0032 Score=64.27 Aligned_cols=79 Identities=22% Similarity=0.257 Sum_probs=48.2
Q ss_pred cCCCCc-ceEEecCCCCchHHHHHHHHHH---hCCCeEEEeCCCCCC------C----------chhHHHHHHHHHHHHH
Q 010366 264 HNAPFR-NMLFYGPPGTGKTMAARELARK---SGLDYALMTGGDVAP------L----------GPQAVTKIHQLFDWAK 323 (512)
Q Consensus 264 ~~~p~~-~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~~~~~~------~----------~~~~~~~l~~lf~~a~ 323 (512)
+|.|.+ .++|+||||||||+||-.++.. .+...++++...-.. . .....+....+.....
T Consensus 55 GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~~~a~~lGvdld~lli~qp~~~Eq~l~i~~~li 134 (349)
T PRK09354 55 GGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPVYAKKLGVDIDNLLVSQPDTGEQALEIADTLV 134 (349)
T ss_pred CCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHh
Confidence 455544 5789999999999999887543 366677776543211 0 0011122223333333
Q ss_pred hcCCCcEEEEccchhhhhh
Q 010366 324 KSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 324 ~~~~~~vl~lDEid~l~~~ 342 (512)
+...+.+|+||-+-.+.+.
T Consensus 135 ~s~~~~lIVIDSvaaL~~~ 153 (349)
T PRK09354 135 RSGAVDLIVVDSVAALVPK 153 (349)
T ss_pred hcCCCCEEEEeChhhhcch
Confidence 4455789999999998763
No 426
>cd03222 ABC_RNaseL_inhibitor The ABC ATPase RNase L inhibitor (RLI) is a key enzyme in ribosomal biogenesis, formation of translation preinitiation complexes, and assembly of HIV capsids. RLI's are not transport proteins, and thus cluster with a group of soluble proteins that lack the transmembrane components commonly found in other members of the family. Structurally, RLI's have an N-terminal Fe-S domain and two nucleotide-binding domains, which are arranged to form two composite active sites in their interface cleft. RLI is one of the most conserved enzymes between archaea and eukaryotes with a sequence identity more than 48%. The high degree of evolutionary conservation suggests that RLI performs a central role in archaeal and eukaryotic physiology.
Probab=97.04 E-value=0.0058 Score=56.65 Aligned_cols=99 Identities=20% Similarity=0.187 Sum_probs=51.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCCC---CC-C-chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDV---AP-L-GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~~---~~-~-~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~ 341 (512)
..+.|.||+|+|||||++.++..... --+.+++..+ .. . ...+..+.- .+..+.. ..|.++++||--.-
T Consensus 26 e~~~l~G~nGsGKSTLl~~l~Gl~~p~~G~i~~~g~~i~~~~q~~~LSgGq~qrv-~laral~-~~p~lllLDEPts~-- 101 (177)
T cd03222 26 EVIGIVGPNGTGKTTAVKILAGQLIPNGDNDEWDGITPVYKPQYIDLSGGELQRV-AIAAALL-RNATFYLFDEPSAY-- 101 (177)
T ss_pred CEEEEECCCCChHHHHHHHHHcCCCCCCcEEEECCEEEEEEcccCCCCHHHHHHH-HHHHHHh-cCCCEEEEECCccc--
Confidence 35889999999999999999986531 1222222111 11 0 111112211 2222222 34789999998652
Q ss_pred hcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 342 ERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
.....+..+..++..+...... .+|++|..
T Consensus 102 ------LD~~~~~~l~~~l~~~~~~~~~-tiiivsH~ 131 (177)
T cd03222 102 ------LDIEQRLNAARAIRRLSEEGKK-TALVVEHD 131 (177)
T ss_pred ------CCHHHHHHHHHHHHHHHHcCCC-EEEEEECC
Confidence 1334455555555554222223 34445543
No 427
>cd03238 ABC_UvrA The excision repair protein UvrA; Nucleotide excision repair in eubacteria is a process that repairs DNA damage by the removal of a 12-13-mer oligonucleotide containing the lesion. Recognition and cleavage of the damaged DNA is a multistep ATP-dependent reaction that requires the UvrA, UvrB, and UvrC proteins. Both UvrA and UvrB are ATPases, with UvrA having two ATP binding sites, which have the characteristic signature of the family of ABC proteins, and UvrB having one ATP binding site that is structurally related to that of helicases.
Probab=97.04 E-value=0.014 Score=54.01 Aligned_cols=22 Identities=23% Similarity=0.244 Sum_probs=19.5
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
.-+.|.||+|+|||||.+.+..
T Consensus 22 ~~~~l~G~nG~GKSTLl~~il~ 43 (176)
T cd03238 22 VLVVVTGVSGSGKSTLVNEGLY 43 (176)
T ss_pred CEEEEECCCCCCHHHHHHHHhh
Confidence 4589999999999999999964
No 428
>PRK00279 adk adenylate kinase; Reviewed
Probab=97.03 E-value=0.00057 Score=65.40 Aligned_cols=29 Identities=34% Similarity=0.650 Sum_probs=25.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.|+++||||+|||++|+.||..++.+.+.
T Consensus 2 ~I~v~G~pGsGKsT~a~~la~~~~~~~is 30 (215)
T PRK00279 2 RLILLGPPGAGKGTQAKFIAEKYGIPHIS 30 (215)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEE
Confidence 38999999999999999999998865554
No 429
>PRK13900 type IV secretion system ATPase VirB11; Provisional
Probab=97.03 E-value=0.002 Score=65.74 Aligned_cols=69 Identities=14% Similarity=0.169 Sum_probs=43.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC--eEEEeC-CCCC-----C-------C--chhHHHHHHHHHHHHHhcCCCcEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD--YALMTG-GDVA-----P-------L--GPQAVTKIHQLFDWAKKSKRGLLL 331 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~--~~~v~~-~~~~-----~-------~--~~~~~~~l~~lf~~a~~~~~~~vl 331 (512)
++++++||+|+||||+++++...+... ++.+.. .++. + . .+...-.+..++..+.+.+ |.+|
T Consensus 161 ~nili~G~tgSGKTTll~aL~~~ip~~~ri~tiEd~~El~l~~~~n~~~~~~~~~~~~~~~~~~~~ll~~~LR~~-PD~I 239 (332)
T PRK13900 161 KNIIISGGTSTGKTTFTNAALREIPAIERLITVEDAREIVLSNHPNRVHLLASKGGQGRAKVTTQDLIEACLRLR-PDRI 239 (332)
T ss_pred CcEEEECCCCCCHHHHHHHHHhhCCCCCeEEEecCCCccccccCCCEEEEEecCCCCCcCcCcHHHHHHHHhccC-CCeE
Confidence 479999999999999999999887532 222210 0010 0 0 0011112455667677666 8899
Q ss_pred EEccchh
Q 010366 332 FIDEADA 338 (512)
Q Consensus 332 ~lDEid~ 338 (512)
++.|+-.
T Consensus 240 ivGEiR~ 246 (332)
T PRK13900 240 IVGELRG 246 (332)
T ss_pred EEEecCC
Confidence 9999974
No 430
>PRK14730 coaE dephospho-CoA kinase; Provisional
Probab=97.03 E-value=0.0016 Score=61.43 Aligned_cols=29 Identities=21% Similarity=0.279 Sum_probs=25.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.+.++|++|+|||++++.++..+|.+++.
T Consensus 3 ~i~itG~~gsGKst~~~~l~~~~g~~~i~ 31 (195)
T PRK14730 3 RIGLTGGIASGKSTVGNYLAQQKGIPILD 31 (195)
T ss_pred EEEEECCCCCCHHHHHHHHHHhhCCeEee
Confidence 48899999999999999999988877763
No 431
>cd01853 Toc34_like Toc34-like (Translocon at the Outer-envelope membrane of Chloroplasts). This family contains several Toc proteins, including Toc34, Toc33, Toc120, Toc159, Toc86, Toc125, and Toc90. The Toc complex at the outer envelope membrane of chloroplasts is a molecular machine of ~500 kDa that contains a single Toc159 protein, four Toc75 molecules, and four or five copies of Toc34. Toc64 and Toc12 are associated with the translocon, but do not appear to be part of the core complex. The Toc translocon initiates the import of nuclear-encoded preproteins from the cytosol into the organelle. Toc34 and Toc159 are both GTPases, while Toc75 is a beta-barrel integral membrane protein. Toc159 is equally distributed between a soluble cytoplasmic form and a membrane-inserted form, suggesting that assembly of the Toc complex is dynamic. Toc34 and Toc75 act sequentially to mediate docking and insertion of Toc159 resulting in assembly of the functional translocon.
Probab=97.02 E-value=0.009 Score=58.53 Aligned_cols=26 Identities=19% Similarity=0.279 Sum_probs=22.1
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHH
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++..|+|.|++|+|||+++.+|...
T Consensus 29 ~~~~~IllvG~tGvGKSSliNaLlg~ 54 (249)
T cd01853 29 DFSLTILVLGKTGVGKSSTINSIFGE 54 (249)
T ss_pred cCCeEEEEECCCCCcHHHHHHHHhCC
Confidence 34458999999999999999999754
No 432
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=97.02 E-value=0.0061 Score=64.01 Aligned_cols=37 Identities=27% Similarity=0.406 Sum_probs=29.6
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD 303 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~ 303 (512)
++..++|+||+|+||||++..||..+ |..+..+++..
T Consensus 99 ~~~vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~ 138 (429)
T TIGR01425 99 KQNVIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADT 138 (429)
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcc
Confidence 45679999999999999999998776 56666666543
No 433
>PRK14529 adenylate kinase; Provisional
Probab=97.02 E-value=0.0043 Score=59.62 Aligned_cols=28 Identities=32% Similarity=0.584 Sum_probs=25.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
.++|.||||+||||+++.||..++.+.+
T Consensus 2 ~I~l~G~PGsGK~T~a~~La~~~~~~~i 29 (223)
T PRK14529 2 NILIFGPNGSGKGTQGALVKKKYDLAHI 29 (223)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCCCc
Confidence 4899999999999999999999987654
No 434
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=97.01 E-value=0.0048 Score=59.66 Aligned_cols=35 Identities=20% Similarity=0.196 Sum_probs=27.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---------CCCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---------~~~~~~v~~~~ 303 (512)
.-+.|+||||||||+++..++... +...++++...
T Consensus 20 ~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 20 SITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 357999999999999999997542 25677777654
No 435
>PF01926 MMR_HSR1: 50S ribosome-binding GTPase; InterPro: IPR002917 Human HSR1, has been localized to the human MHC class I region and is highly homologous to a putative GTP-binding protein, MMR1 from mouse. These proteins represent a new subfamily of GTP-binding proteins that has both prokaryote and eukaryote members [].; GO: 0005525 GTP binding, 0005622 intracellular; PDB: 2DWQ_B 2DBY_A 3CNN_A 3CNO_A 3CNL_A 3IBY_A 1PUI_B 1WXQ_A 1LNZ_A 3GEE_A ....
Probab=97.01 E-value=0.0031 Score=53.80 Aligned_cols=21 Identities=29% Similarity=0.480 Sum_probs=19.5
Q ss_pred eEEecCCCCchHHHHHHHHHH
Q 010366 271 MLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~ 291 (512)
|+|.|+||+|||++.++|...
T Consensus 2 V~iiG~~~~GKSTlin~l~~~ 22 (116)
T PF01926_consen 2 VAIIGRPNVGKSTLINALTGK 22 (116)
T ss_dssp EEEEESTTSSHHHHHHHHHTS
T ss_pred EEEECCCCCCHHHHHHHHhcc
Confidence 789999999999999999864
No 436
>cd03221 ABCF_EF-3 ABCF_EF-3 Elongation factor 3 (EF-3) is a cytosolic protein required by fungal ribosomes for in vitro protein synthesis and for in vivo growth. EF-3 stimulates the binding of the EF-1: GTP: aa-tRNA ternary complex to the ribosomal A site by facilitated release of the deacylated tRNA from the E site. The reaction requires ATP hydrolysis. EF-3 contains two ATP nucleotide binding sequence (NBS) motifs. NBSI is sufficient for the intrinsic ATPase activity. NBSII is essential for the ribosome-stimulated functions.
Probab=97.00 E-value=0.0071 Score=54.00 Aligned_cols=95 Identities=15% Similarity=0.113 Sum_probs=51.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCC----CCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTGG----DVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~----~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~ 342 (512)
..+.|.||+|+|||++++.++..... .-+.+++. -++...+....++ .+..+.. .+|.++++||-..=
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~~~~~G~i~~~~~~~i~~~~~lS~G~~~rv--~laral~-~~p~illlDEP~~~--- 100 (144)
T cd03221 27 DRIGLVGRNGAGKSTLLKLIAGELEPDEGIVTWGSTVKIGYFEQLSGGEKMRL--ALAKLLL-ENPNLLLLDEPTNH--- 100 (144)
T ss_pred CEEEEECCCCCCHHHHHHHHcCCCCCCceEEEECCeEEEEEEccCCHHHHHHH--HHHHHHh-cCCCEEEEeCCccC---
Confidence 46899999999999999999887531 11222211 0011111111221 1222222 34789999998752
Q ss_pred cccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 343 RNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 343 ~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.....+..+..++..+ . ..+|++|..+
T Consensus 101 -----LD~~~~~~l~~~l~~~----~-~til~~th~~ 127 (144)
T cd03221 101 -----LDLESIEALEEALKEY----P-GTVILVSHDR 127 (144)
T ss_pred -----CCHHHHHHHHHHHHHc----C-CEEEEEECCH
Confidence 1334555566666554 1 2455565543
No 437
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=97.00 E-value=0.0043 Score=59.59 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=27.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---C------CCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---G------LDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~------~~~~~v~~~~ 303 (512)
.-+.|+||||+|||+++..+|... + ...++++...
T Consensus 20 ~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~ 63 (226)
T cd01393 20 RITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEG 63 (226)
T ss_pred cEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCC
Confidence 358999999999999999997653 2 4567777644
No 438
>PRK10867 signal recognition particle protein; Provisional
Probab=96.99 E-value=0.0095 Score=62.85 Aligned_cols=39 Identities=26% Similarity=0.307 Sum_probs=29.5
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCCC
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDV 304 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~~ 304 (512)
.+|..++|+||+|+||||++-.+|..+ |..+..+++..+
T Consensus 98 ~~p~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~~D~~ 140 (433)
T PRK10867 98 KPPTVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVAADVY 140 (433)
T ss_pred CCCEEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEEcccc
Confidence 345679999999999999888887754 556666666543
No 439
>PRK13764 ATPase; Provisional
Probab=96.99 E-value=0.00099 Score=72.69 Aligned_cols=25 Identities=36% Similarity=0.563 Sum_probs=23.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+++|++|||||||||++++++..+.
T Consensus 258 ~~ILIsG~TGSGKTTll~AL~~~i~ 282 (602)
T PRK13764 258 EGILIAGAPGAGKSTFAQALAEFYA 282 (602)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4799999999999999999998875
No 440
>TIGR02653 Lon_rel_chp conserved hypothetical protein. This model describes a protein family of unknown function, about 690 residues in length, in which some members show C-terminal sequence similarity to Pfam model pfam05362, which is the Lon protease C-terminal proteolytic domain, from MEROPS family S16. However, the annotated catalytic sites of E. coli Lon protease are not conserved in members of this family. Members have a motif GP[RK][GS]TGKS, similar to the ATP-binding P-loop motif GxxGxGK[ST].
Probab=96.98 E-value=0.0048 Score=67.08 Aligned_cols=189 Identities=20% Similarity=0.263 Sum_probs=98.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhc-----CCCcEEEEccchhhhhhcc
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKS-----KRGLLLFIDEADAFLCERN 344 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~-----~~~~vl~lDEid~l~~~~~ 344 (512)
|++=.||.|||||++=+-++ .....++++.... ..+|-..... ..+.+|.|||+..+...
T Consensus 218 Nl~ELgPrgTGKS~~y~eiS----p~~~liSGG~~T~---------A~LFyn~~~~~~GlVg~~D~VaFDEva~i~f~-- 282 (675)
T TIGR02653 218 NLCELGPRGTGKSHVYKECS----PNSILMSGGQTTV---------ANLFYNMSTRQIGLVGMWDVVAFDEVAGIEFK-- 282 (675)
T ss_pred ceEEECCCCCCcceeeeccC----CceEEEECCccch---------hHeeEEcCCCceeEEeeccEEEEeeccccccC--
Confidence 68889999999999866443 2344555544321 1122111111 12468999999876321
Q ss_pred cCCCCHHHHHHHHHHHHHcCC-----------CCCCEEEEEeeCC---------------CCCC--CHHHHcccccee--
Q 010366 345 KTYMSEAQRSALNALLFRTGD-----------QSKDIVLALATNR---------------PGDL--DSAVADRIDEVL-- 394 (512)
Q Consensus 345 ~~~~~~~~~~~l~~ll~~~~~-----------~~~~viiI~ttN~---------------~~~l--~~al~~R~~~~i-- 394 (512)
....+..+-..|.+ ....+++++-.|. |+.+ |.||++||.-.+
T Consensus 283 -------d~d~v~imK~YM~sG~FsRG~~~~~a~as~vfvGNi~~~v~~~~k~~~lf~~lP~~~~~DsAflDRiH~yiPG 355 (675)
T TIGR02653 283 -------DKDGVQIMKDYMASGSFARGKESIEGKASIVFVGNINQSVETLVKTSHLFAPFPEAMRIDTAFFDRFHYYIPG 355 (675)
T ss_pred -------CHHHHHHHHHHhhcCcccccccccccceeEEEEcccCCchHHHhhcccccccCChhhcccchHHHHhhccCcC
Confidence 12223322222221 1223555555552 2333 568888885333
Q ss_pred -ecCCCCHHHHH---HHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHH
Q 010366 395 -EFPLPGQEERF---KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASV 470 (512)
Q Consensus 395 -~~~~p~~~er~---~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~ 470 (512)
++|..+.+... .++--++...... +.+ .++ .+.++.......+++.||..++-..+
T Consensus 356 WeiPk~~~e~~t~~yGl~~DylsE~l~~-----------lR~--------~~~-~~~~~~~~~l~~~~~~RD~~aV~kt~ 415 (675)
T TIGR02653 356 WEIPKMRPEYFTNRYGFIVDYLAEYMRE-----------MRK--------RSF-ADAIDRFFKLGNNLNQRDVIAVRKTV 415 (675)
T ss_pred CcCccCCHHHcccCCcchHHHHHHHHHH-----------HHh--------hhH-HHHHHhhEecCCCCchhhHHHHHHHH
Confidence 56666554322 1222333322111 000 001 12244444446788999988777555
Q ss_pred HHHHhC-CCCCccCHHHHHHHHHHHHHHHHH
Q 010366 471 QAAVYG-SENCVLDPSLFREVVDYKVAEHQQ 500 (512)
Q Consensus 471 ~aa~~~-~~~~~it~e~~~~al~~~~~~~~~ 500 (512)
.....- -....+|.++++.+++.++...++
T Consensus 416 SgllKLl~P~~~~~~ee~e~~l~~Ale~Rrr 446 (675)
T TIGR02653 416 SGLLKLLYPDGEYTKDDVRECLTYAMEGRRR 446 (675)
T ss_pred HHHHHHhCCCCCCCHHHHHHHHHHHHHHHHH
Confidence 443322 344789999999999877766433
No 441
>PRK10436 hypothetical protein; Provisional
Probab=96.98 E-value=0.005 Score=65.60 Aligned_cols=93 Identities=15% Similarity=0.210 Sum_probs=55.0
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---eEEEeC-CCCCCC----
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTG-GDVAPL---- 307 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---~~~v~~-~~~~~~---- 307 (512)
.+++++-..+.....+..++. .|.+.+|++||+|+||||+..++...+..+ ++.+.. .++.-.
T Consensus 195 ~~L~~LG~~~~~~~~l~~~~~---------~~~GliLvtGpTGSGKTTtL~a~l~~~~~~~~~i~TiEDPvE~~l~gi~Q 265 (462)
T PRK10436 195 LDLETLGMTPAQLAQFRQALQ---------QPQGLILVTGPTGSGKTVTLYSALQTLNTAQINICSVEDPVEIPLAGINQ 265 (462)
T ss_pred CCHHHcCcCHHHHHHHHHHHH---------hcCCeEEEECCCCCChHHHHHHHHHhhCCCCCEEEEecCCccccCCCcce
Confidence 356777666666666665541 233469999999999999998877776432 333321 111100
Q ss_pred ---chhHHHHHHHHHHHHHhcCCCcEEEEccchh
Q 010366 308 ---GPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 338 (512)
Q Consensus 308 ---~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~ 338 (512)
.......+...+..+.+.. |.+|++.|+-.
T Consensus 266 ~~v~~~~g~~f~~~lr~~LR~d-PDvI~vGEIRD 298 (462)
T PRK10436 266 TQIHPKAGLTFQRVLRALLRQD-PDVIMVGEIRD 298 (462)
T ss_pred EeeCCccCcCHHHHHHHHhcCC-CCEEEECCCCC
Confidence 0001112334445555555 89999999965
No 442
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=96.98 E-value=0.0061 Score=65.26 Aligned_cols=24 Identities=33% Similarity=0.562 Sum_probs=21.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|+||+|+|||+++..||..+
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~l 374 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRF 374 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 579999999999999999998653
No 443
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=96.97 E-value=0.0069 Score=58.22 Aligned_cols=38 Identities=21% Similarity=0.239 Sum_probs=27.9
Q ss_pred CCCC-cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 265 NAPF-RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 265 ~~p~-~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
|.|. ..+++.|+||+|||+++..++... +.+.++++..
T Consensus 12 Gi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e 53 (224)
T TIGR03880 12 GFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLE 53 (224)
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECC
Confidence 4443 468889999999999999886542 6667677643
No 444
>PF00519 PPV_E1_C: Papillomavirus helicase; InterPro: IPR001177 Papillomaviruses are a large family of DNA tumour viruses which give rise to warts in their host species. The helicase E1 protein is an ATP-dependent DNA helicase required for initiation of viral DNA replication []. It forms a complex with the viral E2 protein, which is a site-specific DNA-binding transcriptional activator. The E1-E2 complex binds to the replication origin which contains binding sites for both proteins []. The E1 protein is a 70 kDa polypeptide with a central DNA-binding domain and a C-terminal ATPase/helicase domain. It binds specific 18 bp DNA sequences at the origin of replication, melts the DNA duplex and functions as a 3' to 5' helicase []. In addition to E2 it also interacts with DNA polymerase alpha and replication protein A to effect DNA replication. The DNA-binding domain forms a five-stranded antiparallel beta sheet bordered by four loosely packed alpha helices on one side and two tightly packed helices on the other []. Two structural modules within this domain, an extended loop and a helix, contain conserved residues and are critical for DNA binding. In solution E1 is a monomer, but binds DNA as a dimer. Recruitment of more E1 subunits to the complex leads to melting of the origin and ultimately to the formation of an E1 hexamer with helicase activity []. The entry represents the C-terminal region of E1, containing both the DNA-binding and ATPase/helical domains.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding, 0006260 DNA replication; PDB: 1TUE_K 1R9W_A 2V9P_B 2GXA_I 1KSX_J 1KSY_A 1F08_B.
Probab=96.97 E-value=0.0061 Score=62.23 Aligned_cols=31 Identities=29% Similarity=0.449 Sum_probs=27.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|||||+||||+++..|-+.++..++..
T Consensus 263 nClvi~GPPdTGKS~F~~SLi~Fl~GkViSf 293 (432)
T PF00519_consen 263 NCLVIYGPPDTGKSMFCMSLIKFLKGKVISF 293 (432)
T ss_dssp SEEEEESSCCCSHHHHHHHHHHHHTSEEE-G
T ss_pred cEEEEECCCCCchhHHHHHHHHHhCCEEEEe
Confidence 4699999999999999999999998887754
No 445
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=96.96 E-value=0.0046 Score=65.91 Aligned_cols=76 Identities=18% Similarity=0.222 Sum_probs=47.5
Q ss_pred CCCC-cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC--------Cchh-------HHHHHHHHHHHHHhc
Q 010366 265 NAPF-RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--------LGPQ-------AVTKIHQLFDWAKKS 325 (512)
Q Consensus 265 ~~p~-~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~--------~~~~-------~~~~l~~lf~~a~~~ 325 (512)
|.++ ..++|+|+||+|||+++..++... +.+++++++.+... .+.. ....+..+...+...
T Consensus 90 Gi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EEs~~qi~~ra~rlg~~~~~l~~~~e~~~~~I~~~i~~~ 169 (454)
T TIGR00416 90 GIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEESLQQIKMRAIRLGLPEPNLYVLSETNWEQICANIEEE 169 (454)
T ss_pred CccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcCCHHHHHHHHHHcCCChHHeEEcCCCCHHHHHHHHHhc
Confidence 4343 358889999999999999987654 35677777643211 0000 001233444444443
Q ss_pred CCCcEEEEccchhhhh
Q 010366 326 KRGLLLFIDEADAFLC 341 (512)
Q Consensus 326 ~~~~vl~lDEid~l~~ 341 (512)
.+.+|+||.+..+..
T Consensus 170 -~~~~vVIDSIq~l~~ 184 (454)
T TIGR00416 170 -NPQACVIDSIQTLYS 184 (454)
T ss_pred -CCcEEEEecchhhcc
Confidence 478999999998754
No 446
>TIGR02525 plasmid_TraJ plasmid transfer ATPase TraJ. Members of this protein family are predicted ATPases associated with plasmid transfer loci in bacteria. This family is most similar to the DotB ATPase of a type-IV secretion-like system of obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii (TIGR02524).
Probab=96.95 E-value=0.0032 Score=65.19 Aligned_cols=68 Identities=16% Similarity=0.198 Sum_probs=42.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC-----CCeEEEeCC-CCC-------------CCchhHHHHHHHHHHHHHhcCCCc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGG-DVA-------------PLGPQAVTKIHQLFDWAKKSKRGL 329 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v~~~-~~~-------------~~~~~~~~~l~~lf~~a~~~~~~~ 329 (512)
+.++++||+|+||||+++++...+. ..++.+... ++. ..+. ....+...+..+.+.+ |.
T Consensus 150 GlilI~G~TGSGKTT~l~al~~~i~~~~~~~~IvtiEdp~E~~~~~~~~~~~~~q~evg~-~~~~~~~~l~~aLR~~-PD 227 (372)
T TIGR02525 150 GLGLICGETGSGKSTLAASIYQHCGETYPDRKIVTYEDPIEYILGSPDDLLPPAQSQIGR-DVDSFANGIRLALRRA-PK 227 (372)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEecCchhccCCCceeecccccccCC-CccCHHHHHHHhhccC-CC
Confidence 3689999999999999999988763 233433211 110 0011 1112344555566665 89
Q ss_pred EEEEccchh
Q 010366 330 LLFIDEADA 338 (512)
Q Consensus 330 vl~lDEid~ 338 (512)
+|++.|+-.
T Consensus 228 ~I~vGEiRd 236 (372)
T TIGR02525 228 IIGVGEIRD 236 (372)
T ss_pred EEeeCCCCC
Confidence 999999975
No 447
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=96.95 E-value=0.0015 Score=57.49 Aligned_cols=27 Identities=30% Similarity=0.453 Sum_probs=24.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
..++|.|+.|+|||++++.+++.++.+
T Consensus 23 ~~i~l~G~lGaGKTtl~~~l~~~lg~~ 49 (133)
T TIGR00150 23 TVVLLKGDLGAGKTTLVQGLLQGLGIQ 49 (133)
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCC
Confidence 468999999999999999999998854
No 448
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=96.94 E-value=0.00081 Score=68.25 Aligned_cols=69 Identities=16% Similarity=0.278 Sum_probs=43.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---C--CCeEEEe-CCCCC----C---CchhHHHHHHHHHHHHHhcCCCcEEEEcc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---G--LDYALMT-GGDVA----P---LGPQAVTKIHQLFDWAKKSKRGLLLFIDE 335 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~--~~~~~v~-~~~~~----~---~~~~~~~~l~~lf~~a~~~~~~~vl~lDE 335 (512)
++++++||+|+|||+++++|+..+ . ..++.+. ..++. + +.....-.+..++..+.+.+ |..|++.|
T Consensus 149 ~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El~~~~~~~v~~~~~~~~~~~~ll~~aLR~~-PD~IivGE 227 (319)
T PRK13894 149 RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEIQCAAENYVQYHTSIDVNMTALLKTTLRMR-PDRILVGE 227 (319)
T ss_pred CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCccccCCCCEEEEecCCCCCHHHHHHHHhcCC-CCEEEEec
Confidence 479999999999999999999864 1 2233222 11111 0 00011113456777777766 89999999
Q ss_pred chh
Q 010366 336 ADA 338 (512)
Q Consensus 336 id~ 338 (512)
+-.
T Consensus 228 iR~ 230 (319)
T PRK13894 228 VRG 230 (319)
T ss_pred cCC
Confidence 964
No 449
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=96.93 E-value=0.0026 Score=65.82 Aligned_cols=25 Identities=28% Similarity=0.468 Sum_probs=22.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++|+||||||||++++.+++.+.
T Consensus 169 q~~~IvG~~g~GKTtL~~~i~~~I~ 193 (415)
T TIGR00767 169 QRGLIVAPPKAGKTVLLQKIAQAIT 193 (415)
T ss_pred CEEEEECCCCCChhHHHHHHHHhhc
Confidence 3599999999999999999999854
No 450
>TIGR02533 type_II_gspE general secretory pathway protein E. This family describes GspE, the E protein of the type II secretion system, also called the main terminal branch of the general secretion pathway. This model separates GspE from the PilB protein of type IV pilin biosynthesis.
Probab=96.92 E-value=0.0038 Score=67.04 Aligned_cols=94 Identities=15% Similarity=0.191 Sum_probs=55.3
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC---CeEEEeCCC-CC--C--
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---DYALMTGGD-VA--P-- 306 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~---~~~~v~~~~-~~--~-- 306 (512)
..+++++-..++....+..++. .|.+-++++||+|+||||+..++...+.. .++.+..+. +. .
T Consensus 218 ~~~l~~Lg~~~~~~~~l~~~~~---------~~~GlilitGptGSGKTTtL~a~L~~l~~~~~~iiTiEDpvE~~~~~~~ 288 (486)
T TIGR02533 218 RLDLETLGMSPELLSRFERLIR---------RPHGIILVTGPTGSGKTTTLYAALSRLNTPERNILTVEDPVEYQIEGIG 288 (486)
T ss_pred CCCHHHcCCCHHHHHHHHHHHh---------cCCCEEEEEcCCCCCHHHHHHHHHhccCCCCCcEEEEcCCeeeecCCCc
Confidence 3456777666777777765542 22235899999999999999988776642 344432211 10 0
Q ss_pred ---CchhHHHHHHHHHHHHHhcCCCcEEEEccchh
Q 010366 307 ---LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 338 (512)
Q Consensus 307 ---~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~ 338 (512)
...............+.+.. |.+|++.|+-.
T Consensus 289 q~~v~~~~g~~f~~~lr~~LR~d-PDvI~vGEiRd 322 (486)
T TIGR02533 289 QIQVNPKIGLTFAAGLRAILRQD-PDIIMVGEIRD 322 (486)
T ss_pred eEEEccccCccHHHHHHHHHhcC-CCEEEEeCCCC
Confidence 00000012233444455555 89999999975
No 451
>cd01122 GP4d_helicase GP4d_helicase is a homohexameric 5'-3' helicases. Helicases couple NTP hydrolysis to the unwinding of nucleic acid duplexes into their component strands.
Probab=96.92 E-value=0.0061 Score=60.32 Aligned_cols=33 Identities=24% Similarity=0.297 Sum_probs=25.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~ 301 (512)
..++|.||||+|||+++..++... +.++.+++.
T Consensus 31 ~~~~i~g~~G~GKT~l~~~~~~~~~~~~g~~vl~iS~ 67 (271)
T cd01122 31 ELIILTAGTGVGKTTFLREYALDLITQHGVRVGTISL 67 (271)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHHhcCceEEEEEc
Confidence 468999999999999999886653 556666664
No 452
>TIGR02524 dot_icm_DotB Dot/Icm secretion system ATPase DotB. Members of this protein family are the DotB component of Dot/Icm secretion systems, as found in obligate intracellular pathogens Legionella pneumophila and Coxiella burnetii. While this system resembles type IV secretion systems and has been called a form of type IV, the liturature now seems to favor calling this the Dot/Icm system. This family is most closely related to TraJ proteins of plasmid transfer, rather than to proteins of other type IV secretion systems.
Probab=96.91 E-value=0.0048 Score=63.66 Aligned_cols=24 Identities=21% Similarity=0.383 Sum_probs=22.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+.++++||+|+||||++++++..+
T Consensus 135 glilI~GpTGSGKTTtL~aLl~~i 158 (358)
T TIGR02524 135 GIVFITGATGSGKSTLLAAIIREL 158 (358)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 469999999999999999999876
No 453
>PRK00081 coaE dephospho-CoA kinase; Reviewed
Probab=96.91 E-value=0.0021 Score=60.51 Aligned_cols=32 Identities=22% Similarity=0.267 Sum_probs=25.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
.+.|+|++|||||++++.++. +|.+++ ++..+
T Consensus 4 ~i~ltG~~gsGKst~~~~l~~-~g~~~i--~~D~~ 35 (194)
T PRK00081 4 IIGLTGGIGSGKSTVANLFAE-LGAPVI--DADAI 35 (194)
T ss_pred EEEEECCCCCCHHHHHHHHHH-cCCEEE--EecHH
Confidence 589999999999999999998 776544 44443
No 454
>cd03230 ABC_DR_subfamily_A This family of ATP-binding proteins belongs to a multisubunit transporter involved in drug resistance (BcrA and DrrA), nodulation, lipid transport, and lantibiotic immunity. In bacteria and archaea, these transporters usually include an ATP-binding protein and one or two integral membrane proteins. Eukaryote systems of the ABCA subfamily display ABC domains that are quite similar to this family. The ATP-binding domain shows the highest similarity between all members of the ABC transporter family. ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.90 E-value=0.012 Score=54.25 Aligned_cols=24 Identities=25% Similarity=0.301 Sum_probs=21.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||+|.+.++...
T Consensus 27 e~~~i~G~nGsGKStLl~~l~G~~ 50 (173)
T cd03230 27 EIYGLLGPNGAGKTTLIKIILGLL 50 (173)
T ss_pred cEEEEECCCCCCHHHHHHHHhCCC
Confidence 469999999999999999998764
No 455
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=96.90 E-value=0.0012 Score=62.37 Aligned_cols=23 Identities=39% Similarity=0.504 Sum_probs=18.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+++.||+|||||++|-+.|-.+
T Consensus 21 ~v~~~G~AGTGKT~LA~a~Al~~ 43 (205)
T PF02562_consen 21 LVIVNGPAGTGKTFLALAAALEL 43 (205)
T ss_dssp EEEEE--TTSSTTHHHHHHHHHH
T ss_pred eEEEECCCCCcHHHHHHHHHHHH
Confidence 58999999999999999988654
No 456
>cd03227 ABC_Class2 ABC-type Class 2 contains systems involved in cellular processes other than transport. These families are characterised by the fact that the ABC subunit is made up of duplicated, fused ABC modules (ABC2). No known transmembrane proteins or domains are associated with these proteins.
Probab=96.90 E-value=0.0071 Score=55.12 Aligned_cols=22 Identities=23% Similarity=0.440 Sum_probs=19.5
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
+..+++||.|+|||++.++++-
T Consensus 22 ~~~~i~G~NgsGKS~~l~~i~~ 43 (162)
T cd03227 22 SLTIITGPNGSGKSTILDAIGL 43 (162)
T ss_pred CEEEEECCCCCCHHHHHHHHHH
Confidence 4799999999999999999853
No 457
>PF13337 Lon_2: Putative ATP-dependent Lon protease
Probab=96.89 E-value=0.0084 Score=62.69 Aligned_cols=194 Identities=19% Similarity=0.243 Sum_probs=96.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcC-----CCcEEEEccchhhhhhc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSK-----RGLLLFIDEADAFLCER 343 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~-----~~~vl~lDEid~l~~~~ 343 (512)
-|++=.||.|||||++=+-+... ...++++.... ..+|-...... ...+|+||||..+..+.
T Consensus 209 ~NliELgPrGTGKS~vy~eiSp~----~~liSGG~~T~---------A~LFyn~~~~~~GlV~~~D~VafDEv~~i~f~d 275 (457)
T PF13337_consen 209 YNLIELGPRGTGKSYVYKEISPY----GILISGGQVTV---------AKLFYNMSTGQIGLVGRWDVVAFDEVAGIKFKD 275 (457)
T ss_pred cceEEEcCCCCCceeehhhcCcc----cEEEECCCcch---------HHheeeccCCcceeeeeccEEEEEeccCcccCC
Confidence 47999999999999986655432 34455544321 11222222211 24689999999873221
Q ss_pred ccCCCCHHHHHHHHHHHHHcC------CCCCCEEEEEeeCCCC-----------------CC-CHHHHcccccee---ec
Q 010366 344 NKTYMSEAQRSALNALLFRTG------DQSKDIVLALATNRPG-----------------DL-DSAVADRIDEVL---EF 396 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~------~~~~~viiI~ttN~~~-----------------~l-~~al~~R~~~~i---~~ 396 (512)
.+.. ..+...+..-. ......-+|+..|... .+ |.||++||.-.+ ++
T Consensus 276 -----~d~i-~imK~YMesG~fsRG~~~i~a~as~vf~GNi~~~v~~~~~~~~lf~~lP~~~~DsAflDRiH~~iPGWei 349 (457)
T PF13337_consen 276 -----KDEI-QIMKDYMESGSFSRGKEEINADASMVFVGNINQSVENMLKTSHLFEPLPEEMRDSAFLDRIHGYIPGWEI 349 (457)
T ss_pred -----hHHH-HHHHHHHhccceeecccccccceeEEEEcCcCCcchhccccchhhhhcCHHHHHHHHHhHhheeccCccc
Confidence 1122 33333332110 1122344444444321 11 568888885444 45
Q ss_pred CCCCHHHHHH---HHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHH
Q 010366 397 PLPGQEERFK---LLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAA 473 (512)
Q Consensus 397 ~~p~~~er~~---Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa 473 (512)
|....+.... ++--++...... +.+ .++ .+.++.......+++.||..++-..+.+.
T Consensus 350 Pk~~~e~~t~~~gl~~Dy~aE~l~~-----------LR~--------~~~-~~~~~~~~~lg~~~~~RD~~AV~kt~Sgl 409 (457)
T PF13337_consen 350 PKIRPEMFTNGYGLIVDYFAEILHE-----------LRK--------QSY-SDAVDKYFKLGSNLSQRDTKAVKKTVSGL 409 (457)
T ss_pred cccCHHHccCCceeeHHHHHHHHHH-----------HHH--------HHH-HHHHHhhEeeCCCcchhhHHHHHHHHHHH
Confidence 5554432211 222222221110 000 001 12234444445668888887776444433
Q ss_pred Hh-CCCCCccCHHHHHHHHHHHHHHHHHH
Q 010366 474 VY-GSENCVLDPSLFREVVDYKVAEHQQR 501 (512)
Q Consensus 474 ~~-~~~~~~it~e~~~~al~~~~~~~~~~ 501 (512)
.. --++..+|.++++.+++.++...++=
T Consensus 410 lKLL~P~~~~~~ee~~~~l~~A~e~R~rV 438 (457)
T PF13337_consen 410 LKLLFPHGEFTKEELEECLRPALEMRRRV 438 (457)
T ss_pred HHhhCCCCCCCHHHHHHHHHHHHHHHHHH
Confidence 21 23447899999999998887665443
No 458
>PF06414 Zeta_toxin: Zeta toxin; InterPro: IPR010488 This entry represents a domain originally identified in bacterial zeta toxin proteins, where it comprises the whole protein []. It has subsequently been found in a number of other proteins, such as polynucleotide kinase and 2',3'-cyclic-nucleotide 3'-phosphodiesterase. It appears to function as a kinase domain [, ].; GO: 0005524 ATP binding, 0016301 kinase activity; PDB: 2P5T_H 1GVN_B 3Q8X_D.
Probab=96.89 E-value=0.0019 Score=61.05 Aligned_cols=40 Identities=23% Similarity=0.394 Sum_probs=30.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh-CCCeEEEeCCCCCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS-GLDYALMTGGDVAP 306 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l-~~~~~~v~~~~~~~ 306 (512)
.|.-+++.|+||+|||+++..+...+ +..++.++..++..
T Consensus 14 ~P~~~i~aG~~GsGKSt~~~~~~~~~~~~~~v~i~~D~~r~ 54 (199)
T PF06414_consen 14 KPTLIIIAGQPGSGKSTLARQLLEEFGGGGIVVIDADEFRQ 54 (199)
T ss_dssp S-EEEEEES-TTSTTHHHHHHHHHHT-TT-SEEE-GGGGGG
T ss_pred CCEEEEEeCCCCCCHHHHHHHhhhhccCCCeEEEehHHHHH
Confidence 34578999999999999999999988 77888888777543
No 459
>PRK12608 transcription termination factor Rho; Provisional
Probab=96.89 E-value=0.003 Score=64.86 Aligned_cols=24 Identities=29% Similarity=0.479 Sum_probs=21.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+|+||||||||++++.+++.+.
T Consensus 135 R~LIvG~pGtGKTTLl~~la~~i~ 158 (380)
T PRK12608 135 RGLIVAPPRAGKTVLLQQIAAAVA 158 (380)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHH
Confidence 589999999999999999988763
No 460
>cd01878 HflX HflX subfamily. A distinct conserved domain with a glycine-rich segment N-terminal of the GTPase domain characterizes the HflX subfamily. The E. coli HflX has been implicated in the control of the lambda cII repressor proteolysis, but the actual biological functions of these GTPases remain unclear. HflX is widespread, but not universally represented in all three superkingdoms.
Probab=96.89 E-value=0.026 Score=53.17 Aligned_cols=23 Identities=17% Similarity=0.236 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|+||+|||+|.+.+...
T Consensus 42 ~~I~iiG~~g~GKStLl~~l~~~ 64 (204)
T cd01878 42 PTVALVGYTNAGKSTLFNALTGA 64 (204)
T ss_pred CeEEEECCCCCCHHHHHHHHhcc
Confidence 47999999999999999999764
No 461
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=96.89 E-value=0.008 Score=57.46 Aligned_cols=34 Identities=41% Similarity=0.581 Sum_probs=27.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
..++++||||||||+++..+|... +.+.++++..
T Consensus 20 ~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 20 TVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 358899999999999999998764 5677777754
No 462
>PRK04182 cytidylate kinase; Provisional
Probab=96.88 E-value=0.00093 Score=61.56 Aligned_cols=29 Identities=48% Similarity=0.670 Sum_probs=26.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.++|+|+||||||++++.||..++.+++.
T Consensus 2 ~I~i~G~~GsGKstia~~la~~lg~~~id 30 (180)
T PRK04182 2 IITISGPPGSGKTTVARLLAEKLGLKHVS 30 (180)
T ss_pred EEEEECCCCCCHHHHHHHHHHHcCCcEec
Confidence 38899999999999999999999987764
No 463
>PLN02674 adenylate kinase
Probab=96.88 E-value=0.001 Score=64.77 Aligned_cols=30 Identities=23% Similarity=0.418 Sum_probs=26.0
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
...++|.||||+||||.++.||..++.+.+
T Consensus 31 ~~~i~l~G~PGsGKgT~a~~La~~~~~~hi 60 (244)
T PLN02674 31 DKRLILIGPPGSGKGTQSPIIKDEYCLCHL 60 (244)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCcEE
Confidence 357999999999999999999999875544
No 464
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=96.86 E-value=0.0012 Score=67.53 Aligned_cols=69 Identities=17% Similarity=0.252 Sum_probs=42.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC--CeEEEeC-CCCC----C--------Cc-hhHHHHHHHHHHHHHhcCCCcEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTG-GDVA----P--------LG-PQAVTKIHQLFDWAKKSKRGLLLF 332 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~-~~~~----~--------~~-~~~~~~l~~lf~~a~~~~~~~vl~ 332 (512)
.+++++||+|+||||++++++..+.. .++.+.. .++. . .+ +...-....++..+.+.. |..|+
T Consensus 163 ~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El~l~~~~~v~l~~~~~~~~~~~~t~~~ll~~~LR~~-pD~Ii 241 (344)
T PRK13851 163 LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLELVIPHENHVRLLYSKNGAGLGAVTAEHLLQASLRMR-PDRIL 241 (344)
T ss_pred CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccccCCCCCEEEEEeeccccCcCccCHHHHHHHHhcCC-CCeEE
Confidence 47999999999999999999988643 2222211 0110 0 00 000112345666676665 88999
Q ss_pred Eccchh
Q 010366 333 IDEADA 338 (512)
Q Consensus 333 lDEid~ 338 (512)
+.|+-.
T Consensus 242 vGEiR~ 247 (344)
T PRK13851 242 LGEMRD 247 (344)
T ss_pred EEeeCc
Confidence 999964
No 465
>PF00406 ADK: Adenylate kinase; InterPro: IPR000850 Adenylate kinases (ADK) are phosphotransferases that catalyse the reversible reaction AMP + MgATP = ADP + MgADP an essential reaction for many processes in living cells. Two ADK isozymes have been identified in mammalian cells. These specifically bind AMP and favour binding to ATP over other nucleotide triphosphates (AK1 is cytosolic and AK2 is located in the mitochondria). A third ADK has been identified in bovine heart and human cells [], this is a mitochondrial GTP:AMP phosphotransferase, also specific for the phosphorylation of AMP, but can only use GTP or ITP as a substrate []. ADK has also been identified in different bacterial species and in yeast []. Two further enzymes are known to be related to the ADK family, i.e. yeast uridine monophosphokinase and slime mold UMP-CMP kinase. Within the ADK family there are several conserved regions, including the ATP-binding domains. One of the most conserved areas includes an Arg residue, whose modification inactivates the enzyme, together with an Asp that resides in the catalytic cleft of the enzyme and participates in a salt bridge.; GO: 0005524 ATP binding, 0019205 nucleobase-containing compound kinase activity, 0006139 nucleobase-containing compound metabolic process; PDB: 1ZD8_A 3TLX_D 1TEV_A 1ZAK_B 3CM0_A 3ADK_A 1ZIP_A 1ZIO_A 1ZIN_A 3NDP_A ....
Probab=96.86 E-value=0.0007 Score=60.91 Aligned_cols=26 Identities=42% Similarity=0.728 Sum_probs=22.3
Q ss_pred EecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 273 FYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 273 L~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
|.||||+|||++|+.||..++...+.
T Consensus 1 i~G~PgsGK~t~~~~la~~~~~~~is 26 (151)
T PF00406_consen 1 ILGPPGSGKGTQAKRLAKRYGLVHIS 26 (151)
T ss_dssp EEESTTSSHHHHHHHHHHHHTSEEEE
T ss_pred CcCCCCCChHHHHHHHHHhcCcceec
Confidence 68999999999999999998764443
No 466
>COG2274 SunT ABC-type bacteriocin/lantibiotic exporters, contain an N-terminal double-glycine peptidase domain [Defense mechanisms]
Probab=96.86 E-value=0.67 Score=52.20 Aligned_cols=26 Identities=23% Similarity=0.310 Sum_probs=22.1
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
|...+.|.|++||||||++|.+....
T Consensus 498 ~Ge~vaIvG~SGsGKSTL~KLL~gly 523 (709)
T COG2274 498 PGEKVAIVGRSGSGKSTLLKLLLGLY 523 (709)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhcCC
Confidence 33459999999999999999998764
No 467
>cd03282 ABC_MSH4_euk MutS4 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding c
Probab=96.86 E-value=0.0086 Score=56.85 Aligned_cols=21 Identities=29% Similarity=0.483 Sum_probs=19.1
Q ss_pred cceEEecCCCCchHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA 289 (512)
.-++|+||+|+|||++.+.++
T Consensus 30 ~~~~l~G~n~~GKstll~~i~ 50 (204)
T cd03282 30 RFHIITGPNMSGKSTYLKQIA 50 (204)
T ss_pred cEEEEECCCCCCHHHHHHHHH
Confidence 459999999999999999986
No 468
>COG2805 PilT Tfp pilus assembly protein, pilus retraction ATPase PilT [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=96.85 E-value=0.004 Score=61.32 Aligned_cols=70 Identities=17% Similarity=0.232 Sum_probs=44.1
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCCCCCC--------------chhHHHHHHHHHHHHHhcCCCcE
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAPL--------------GPQAVTKIHQLFDWAKKSKRGLL 330 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~~~~~--------------~~~~~~~l~~lf~~a~~~~~~~v 330 (512)
|.+-||++||+|+||||+.-++-.+++. +...++-.|...+ |..+ ..+...+..|.+.. |+|
T Consensus 124 ~~GLILVTGpTGSGKSTTlAamId~iN~~~~~HIlTIEDPIE~vh~skkslI~QREvG~dT-~sF~~aLraALReD-PDV 201 (353)
T COG2805 124 PRGLILVTGPTGSGKSTTLAAMIDYINKHKAKHILTIEDPIEYVHESKKSLINQREVGRDT-LSFANALRAALRED-PDV 201 (353)
T ss_pred CCceEEEeCCCCCcHHHHHHHHHHHHhccCCcceEEecCchHhhhcchHhhhhHHHhcccH-HHHHHHHHHHhhcC-CCE
Confidence 3345899999999999999999888763 2333333332221 1111 22334445566655 899
Q ss_pred EEEccchh
Q 010366 331 LFIDEADA 338 (512)
Q Consensus 331 l~lDEid~ 338 (512)
|++-|+-.
T Consensus 202 IlvGEmRD 209 (353)
T COG2805 202 ILVGEMRD 209 (353)
T ss_pred EEEecccc
Confidence 99999865
No 469
>cd03228 ABCC_MRP_Like The MRP (Mutidrug Resistance Protein)-like transporters are involved in drug, peptide, and lipid export. They belong to the subfamily C of the ATP-binding cassette (ABC) superfamily of transport proteins. The ABCC subfamily contains transporters with a diverse functional spectrum that includes ion transport, cell surface receptor, and toxin secretion activities. The MRP-like family, simlar to all ABC proteins, have a common four-domain core structure constituted by two membrane-spanning domains, each composed of six transmembrane (TM) helices, and two nucleotide-binding domains (NBD). ABC transporters are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to, the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzing proteins.
Probab=96.85 E-value=0.011 Score=54.35 Aligned_cols=26 Identities=31% Similarity=0.492 Sum_probs=22.6
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+...+.|.||+|+|||+|.+.++...
T Consensus 27 ~G~~~~l~G~nGsGKstLl~~i~G~~ 52 (171)
T cd03228 27 PGEKVAIVGPSGSGKSTLLKLLLRLY 52 (171)
T ss_pred CCCEEEEECCCCCCHHHHHHHHHcCC
Confidence 33469999999999999999998875
No 470
>PRK01184 hypothetical protein; Provisional
Probab=96.84 E-value=0.0011 Score=61.79 Aligned_cols=29 Identities=31% Similarity=0.528 Sum_probs=24.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
-++|+||||+||||+++ ++..+|.+++..
T Consensus 3 ~i~l~G~~GsGKsT~a~-~~~~~g~~~i~~ 31 (184)
T PRK01184 3 IIGVVGMPGSGKGEFSK-IAREMGIPVVVM 31 (184)
T ss_pred EEEEECCCCCCHHHHHH-HHHHcCCcEEEh
Confidence 58999999999999987 788888777644
No 471
>TIGR02173 cyt_kin_arch cytidylate kinase, putative. Proteins in this family are believed to be cytidylate kinase. Members of this family are found in the archaea and in spirochaetes, and differ considerably from the common bacterial form of cytidylate kinase described by TIGR00017.
Probab=96.84 E-value=0.0011 Score=60.68 Aligned_cols=28 Identities=43% Similarity=0.647 Sum_probs=25.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
+.|+|+||+|||++|+.+++.++.+++.
T Consensus 3 I~i~G~~GSGKstia~~la~~lg~~~~~ 30 (171)
T TIGR02173 3 ITISGPPGSGKTTVAKILAEKLSLKLIS 30 (171)
T ss_pred EEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 7899999999999999999999888654
No 472
>COG4178 ABC-type uncharacterized transport system, permease and ATPase components [General function prediction only]
Probab=96.84 E-value=0.0066 Score=65.85 Aligned_cols=27 Identities=37% Similarity=0.437 Sum_probs=23.6
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHh
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
.|...+|+.||+|||||++.|+||.-.
T Consensus 417 ~~G~~llI~G~SG~GKTsLlRaiaGLW 443 (604)
T COG4178 417 RPGERLLITGESGAGKTSLLRALAGLW 443 (604)
T ss_pred CCCCEEEEECCCCCCHHHHHHHHhccC
Confidence 355689999999999999999999764
No 473
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=96.84 E-value=0.011 Score=63.88 Aligned_cols=96 Identities=16% Similarity=0.063 Sum_probs=56.4
Q ss_pred cCCCC-cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC--------Cc---------------------hh
Q 010366 264 HNAPF-RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP--------LG---------------------PQ 310 (512)
Q Consensus 264 ~~~p~-~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~--------~~---------------------~~ 310 (512)
+|.|+ ..+|+.||||||||+++..++... |.+.++++..+-.. .+ ..
T Consensus 258 GG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~eEs~~~i~~~~~~lg~~~~~~~~~g~l~~~~~~p~~~~ 337 (484)
T TIGR02655 258 GGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAYEESRAQLLRNAYSWGIDFEEMEQQGLLKIICAYPESAG 337 (484)
T ss_pred CCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCHHHHHHHHHHcCCChHHHhhCCcEEEEEcccccCC
Confidence 34444 468999999999999999887653 55666666433210 00 01
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 311 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 311 ~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
....+..+.+.+.... +.+|+||-+..+...- . ....+..+..|...+.
T Consensus 338 ~~~~~~~i~~~i~~~~-~~~vvIDsi~~~~~~~-~---~~~~r~~~~~l~~~lk 386 (484)
T TIGR02655 338 LEDHLQIIKSEIADFK-PARIAIDSLSALARGV-S---NNAFRQFVIGVTGYAK 386 (484)
T ss_pred hHHHHHHHHHHHHHcC-CCEEEEcCHHHHHHhc-C---HHHHHHHHHHHHHHHh
Confidence 1334555555555544 7899999999875421 1 1233444445555443
No 474
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=96.83 E-value=0.0079 Score=61.96 Aligned_cols=26 Identities=35% Similarity=0.519 Sum_probs=20.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+.+.+.|.||+|+||||+.-.||..+
T Consensus 202 ~~~vi~LVGPTGVGKTTTlAKLAar~ 227 (407)
T COG1419 202 QKRVIALVGPTGVGKTTTLAKLAARY 227 (407)
T ss_pred cCcEEEEECCCCCcHHHHHHHHHHHH
Confidence 45679999999999998766665544
No 475
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.83 E-value=0.0013 Score=63.39 Aligned_cols=22 Identities=27% Similarity=0.623 Sum_probs=19.8
Q ss_pred eEEecCCCCchHHHHHHHHHHh
Q 010366 271 MLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l 292 (512)
++++|+||+|||++++.+....
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~ 22 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR 22 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc
Confidence 4789999999999999998874
No 476
>PF13521 AAA_28: AAA domain; PDB: 1LW7_A.
Probab=96.79 E-value=0.00092 Score=60.91 Aligned_cols=26 Identities=35% Similarity=0.544 Sum_probs=20.6
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
|.|+|+||||||||++.|+.. |.+++
T Consensus 2 I~i~G~~stGKTTL~~~L~~~-g~~~v 27 (163)
T PF13521_consen 2 IVITGGPSTGKTTLIEALAAR-GYPVV 27 (163)
T ss_dssp EEEE--TTSHHHHHHHHHHHH-T-EEE
T ss_pred EEEECCCCCCHHHHHHHHHHc-CCeEE
Confidence 789999999999999999988 76655
No 477
>PF05872 DUF853: Bacterial protein of unknown function (DUF853); InterPro: IPR008571 Members of this family have a P-loop containing nucleotide triphosphate hydrolases fold. This family is restricted to bacterial proteins, none of which have currently been characterised.
Probab=96.79 E-value=0.0081 Score=62.48 Aligned_cols=71 Identities=15% Similarity=0.281 Sum_probs=49.5
Q ss_pred EEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHcccccee--ecCCCCHHHHHHH
Q 010366 330 LLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVL--EFPLPGQEERFKL 407 (512)
Q Consensus 330 vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i--~~~~p~~~er~~I 407 (512)
|+||||++-|+... +....+.+.+....+ .++.|-|++.|..|.+++..+++-+...| -+..+++.+.+.+
T Consensus 258 VfFfDEAHLLF~da-----~kall~~ieqvvrLI--RSKGVGv~fvTQ~P~DiP~~VL~QLGnrIQHaLRAfTP~DqKav 330 (502)
T PF05872_consen 258 VFFFDEAHLLFNDA-----PKALLDKIEQVVRLI--RSKGVGVYFVTQNPTDIPDDVLGQLGNRIQHALRAFTPKDQKAV 330 (502)
T ss_pred EEEEechhhhhcCC-----CHHHHHHHHHHHHHh--hccCceEEEEeCCCCCCCHHHHHhhhhHHHHHHhcCCHhHHHHH
Confidence 78899999887432 334444455554444 56677788889999999999998766666 5556666666654
No 478
>cd03246 ABCC_Protease_Secretion This family represents the ABC component of the protease secretion system PrtD, a 60-kDa integral membrane protein sharing 37% identity with HlyB, the ABC component of the alpha-hemolysin secretion pathway, in the C-terminal domain. They export degradative enzymes by using a type I protein secretion system and lack an N-terminal signal peptide, but contain a C-terminal secretion signal. The Type I secretion apparatus is made up of three components, an ABC transporter, a membrane fusion protein (MFP), and an outer membrane protein (OMP). For the HlyA transporter complex, HlyB (ABC transporter) and HlyD (MFP) reside in the inner membrane of E. coli. The OMP component is TolC, which is thought to interact with the MFP to form a continuous channel across the periplasm from the cytoplasm to the exterior. HlyB belongs to the family of ABC transporters, which are ubiquitous, ATP-dependent transmembrane pumps or channels. The spectrum of transport substra
Probab=96.78 E-value=0.017 Score=53.11 Aligned_cols=24 Identities=29% Similarity=0.502 Sum_probs=21.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||+|.+.|+...
T Consensus 29 e~~~i~G~nGsGKStLl~~l~G~~ 52 (173)
T cd03246 29 ESLAIIGPSGSGKSTLARLILGLL 52 (173)
T ss_pred CEEEEECCCCCCHHHHHHHHHhcc
Confidence 358999999999999999999765
No 479
>PRK14526 adenylate kinase; Provisional
Probab=96.77 E-value=0.0013 Score=62.82 Aligned_cols=28 Identities=32% Similarity=0.609 Sum_probs=24.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
.++|+|||||||||+++.||..++.+++
T Consensus 2 ~i~l~G~pGsGKsT~a~~La~~~~~~~i 29 (211)
T PRK14526 2 KLVFLGPPGSGKGTIAKILSNELNYYHI 29 (211)
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcee
Confidence 4889999999999999999999876544
No 480
>TIGR00152 dephospho-CoA kinase. This model produces scores in the range of 0-25 bits against adenylate, guanylate, uridine, and thymidylate kinases.
Probab=96.77 E-value=0.0022 Score=60.03 Aligned_cols=28 Identities=29% Similarity=0.250 Sum_probs=23.8
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
+.|+|++|||||++++.++...+.+++.
T Consensus 2 i~itG~~gsGKst~~~~l~~~~~~~~i~ 29 (188)
T TIGR00152 2 IGLTGGIGSGKSTVANYLADKYHFPVID 29 (188)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCeEEe
Confidence 7899999999999999999986565543
No 481
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=96.77 E-value=0.013 Score=60.26 Aligned_cols=108 Identities=19% Similarity=0.189 Sum_probs=68.5
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHhC--CCeEEEeCCCCCC---------------CchhHHHHHHHHHHHHHhcCCC
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAP---------------LGPQAVTKIHQLFDWAKKSKRG 328 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~~~~~~~---------------~~~~~~~~l~~lf~~a~~~~~~ 328 (512)
.|..-+||-|.||.|||||.-.++..+. .++.|+++.+-.. ..--.+.++..+...+...+ |
T Consensus 91 V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEES~~QiklRA~RL~~~~~~l~l~aEt~~e~I~~~l~~~~-p 169 (456)
T COG1066 91 VPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEESLQQIKLRADRLGLPTNNLYLLAETNLEDIIAELEQEK-P 169 (456)
T ss_pred ccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCcCHHHHHHHHHHhCCCccceEEehhcCHHHHHHHHHhcC-C
Confidence 3444588889999999999888877653 3788998765321 11122344566666666544 8
Q ss_pred cEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCCCCCCEEEEE
Q 010366 329 LLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGDQSKDIVLAL 374 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~~~~~viiI~ 374 (512)
.+++||-|..+....-.+ +.-...++.-..|..........+++|+
T Consensus 170 ~lvVIDSIQT~~s~~~~SapGsVsQVRe~t~~L~~~AK~~~i~~fiVG 217 (456)
T COG1066 170 DLVVIDSIQTLYSEEITSAPGSVSQVREVAAELMRLAKTKNIAIFIVG 217 (456)
T ss_pred CEEEEeccceeecccccCCCCcHHHHHHHHHHHHHHHHHcCCeEEEEE
Confidence 999999999987665322 2224456666666655544444444444
No 482
>PRK04328 hypothetical protein; Provisional
Probab=96.77 E-value=0.01 Score=58.17 Aligned_cols=36 Identities=25% Similarity=0.414 Sum_probs=24.8
Q ss_pred CCCC-cceEEecCCCCchHHHHHHHHHH---hCCCeEEEe
Q 010366 265 NAPF-RNMLFYGPPGTGKTMAARELARK---SGLDYALMT 300 (512)
Q Consensus 265 ~~p~-~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~ 300 (512)
|.|+ ..+|++||||||||+++..++.. .|.+.++++
T Consensus 19 Gip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis 58 (249)
T PRK04328 19 GIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVA 58 (249)
T ss_pred CCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEE
Confidence 4443 46888999999999998877543 244554444
No 483
>TIGR02788 VirB11 P-type DNA transfer ATPase VirB11. The VirB11 protein is found in the vir locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for DNA transfer. VirB11 is believed to be an ATPase. VirB11 is a homolog of the P-like conjugation system TrbB protein and the Flp pilus sytem protein TadA.
Probab=96.75 E-value=0.0064 Score=61.59 Aligned_cols=69 Identities=14% Similarity=0.189 Sum_probs=42.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC--CeEEEeC-CCCC----CC---------chhHHHHHHHHHHHHHhcCCCcEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL--DYALMTG-GDVA----PL---------GPQAVTKIHQLFDWAKKSKRGLLLF 332 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~-~~~~----~~---------~~~~~~~l~~lf~~a~~~~~~~vl~ 332 (512)
.+++|+||+|+||||++++++..+.. ..+.+.. .++. .. .+...-.+..++..+.+.. |.+|+
T Consensus 145 ~~ili~G~tGsGKTTll~al~~~~~~~~~iv~ied~~El~~~~~~~~~l~~~~~~~~~~~~~~~~~l~~~Lr~~-pd~ii 223 (308)
T TIGR02788 145 KNIIISGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLAKVTPKDLLQSCLRMR-PDRII 223 (308)
T ss_pred CEEEEECCCCCCHHHHHHHHHccCCccccEEEEcCccccCCCCCCEEEEEecCCCCCcCccCHHHHHHHHhcCC-CCeEE
Confidence 47999999999999999999887642 2222221 0110 00 0000112344565566655 88999
Q ss_pred Eccchh
Q 010366 333 IDEADA 338 (512)
Q Consensus 333 lDEid~ 338 (512)
+||+-.
T Consensus 224 ~gE~r~ 229 (308)
T TIGR02788 224 LGELRG 229 (308)
T ss_pred EeccCC
Confidence 999974
No 484
>PRK05541 adenylylsulfate kinase; Provisional
Probab=96.74 E-value=0.0018 Score=59.78 Aligned_cols=27 Identities=26% Similarity=0.263 Sum_probs=23.9
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
++..++|+|+||+|||++++.++..+.
T Consensus 6 ~~~~I~i~G~~GsGKst~a~~l~~~l~ 32 (176)
T PRK05541 6 NGYVIWITGLAGSGKTTIAKALYERLK 32 (176)
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHHH
Confidence 345799999999999999999999885
No 485
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=96.74 E-value=0.022 Score=55.34 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=18.9
Q ss_pred eEEecCCCCchHHHHHHHHHH
Q 010366 271 MLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~ 291 (512)
-+|+||||+|||+++..+|-.
T Consensus 4 ~ll~g~~G~GKS~lal~la~~ 24 (239)
T cd01125 4 SALVAPGGTGKSSLLLVLALA 24 (239)
T ss_pred eEEEcCCCCCHHHHHHHHHHH
Confidence 689999999999999999764
No 486
>cd03214 ABC_Iron-Siderophores_B12_Hemin ABC transporters, involved in the uptake of siderophores, heme, and vitamin B12, are widely conserved in bacteria and archaea. Only very few species lack representatives of the siderophore family transporters. The E. coli BtuCD protein is an ABC transporter mediating vitamin B12 uptake. The two ATP-binding cassettes (BtuD) are in close contact with each other, as are the two membrane-spanning subunits (BtuC); this arrangement is distinct from that observed for the E. coli lipid flippase MsbA. The BtuC subunits provide 20 transmembrane helices grouped around a translocation pathway that is closed to the cytoplasm by a gate region, whereas the dimer arrangement of the BtuD subunits resembles the ATP-bound form of the Rad50 DNA repair enzyme. A prominent cytoplasmic loop of BtuC forms the contact region with the ATP-binding cassette and represent a conserved motif among the ABC transporters.
Probab=96.74 E-value=0.014 Score=54.20 Aligned_cols=25 Identities=28% Similarity=0.311 Sum_probs=22.0
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
...+.|.||+|+|||++++.++...
T Consensus 25 G~~~~l~G~nGsGKStLl~~i~G~~ 49 (180)
T cd03214 25 GEIVGILGPNGAGKSTLLKTLAGLL 49 (180)
T ss_pred CCEEEEECCCCCCHHHHHHHHhCCC
Confidence 3468999999999999999998765
No 487
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=96.73 E-value=0.0011 Score=63.38 Aligned_cols=22 Identities=41% Similarity=0.683 Sum_probs=17.5
Q ss_pred eEEecCCCCchHHHHHHHHHHh
Q 010366 271 MLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l 292 (512)
.++.||||||||+++..++..+
T Consensus 20 ~~i~GpPGTGKT~~l~~~i~~~ 41 (236)
T PF13086_consen 20 TLIQGPPGTGKTTTLASIIAQL 41 (236)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCChHHHHHHHHHHh
Confidence 8999999999998777766655
No 488
>PF01580 FtsK_SpoIIIE: FtsK/SpoIIIE family; InterPro: IPR002543 The FtsK/SpoIIIE domain is found extensively in a wide variety of proteins from prokaryotes and plasmids [] some of which contain up to three copies.The domain contains a putative ATP binding P-loop motif. A mutation in FtsK causes a temperature sensitive block in cell division and it is involved in peptidoglycan synthesis or modification []. The SpoIIIE protein is implicated in intercellular chromosomal DNA transfer []. ; GO: 0000166 nucleotide binding, 0003677 DNA binding, 0005524 ATP binding, 0007049 cell cycle, 0007059 chromosome segregation, 0051301 cell division, 0016021 integral to membrane; PDB: 2IUS_E 2IUU_A 2IUT_A.
Probab=96.73 E-value=0.0091 Score=56.52 Aligned_cols=23 Identities=30% Similarity=0.485 Sum_probs=18.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
|+|+.|+||+|||++.+.++..+
T Consensus 40 h~li~G~tgsGKS~~l~~ll~~l 62 (205)
T PF01580_consen 40 HLLIAGATGSGKSTLLRTLLLSL 62 (205)
T ss_dssp SEEEE--TTSSHHHHHHHHHHHH
T ss_pred eEEEEcCCCCCccHHHHHHHHHH
Confidence 89999999999999999886654
No 489
>TIGR02538 type_IV_pilB type IV-A pilus assembly ATPase PilB. This model describes a protein of type IV pilus biogenesis designated PilB in Pseudomonas aeruginosa but PilF in Neisseria gonorrhoeae; the more common usage, reflected here, is PilB. This protein is an ATPase involved in protein export for pilin assembly and is closely related to GspE (TIGR02533) of type II secretion, also called the main terminal branch of the general secretion pathway. Note that type IV pilus systems are often divided into type IV-A and IV-B, with the latter group including bundle-forming pilus, mannose-sensitive hemagglutinin, etc. Members of this family are found in type IV-A systems.
Probab=96.72 E-value=0.0051 Score=67.47 Aligned_cols=93 Identities=12% Similarity=0.161 Sum_probs=54.7
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC---CeEEEeCC-CCC--C---
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL---DYALMTGG-DVA--P--- 306 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~---~~~~v~~~-~~~--~--- 306 (512)
.+++++-..+.....+..++. .+.+.+|++||+|+||||+..++.+.++. .++.+..+ ++. .
T Consensus 293 ~~l~~lg~~~~~~~~l~~~~~---------~~~Glilv~G~tGSGKTTtl~a~l~~~~~~~~~i~tiEdpvE~~~~~~~q 363 (564)
T TIGR02538 293 LDIDKLGFEPDQKALFLEAIH---------KPQGMVLVTGPTGSGKTVSLYTALNILNTEEVNISTAEDPVEINLPGINQ 363 (564)
T ss_pred CCHHHcCCCHHHHHHHHHHHH---------hcCCeEEEECCCCCCHHHHHHHHHHhhCCCCceEEEecCCceecCCCceE
Confidence 456777666766666655442 12246899999999999999888777642 23322211 110 0
Q ss_pred --CchhHHHHHHHHHHHHHhcCCCcEEEEccchh
Q 010366 307 --LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 338 (512)
Q Consensus 307 --~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~ 338 (512)
............+..+.+.. |.+|++.|+-.
T Consensus 364 ~~v~~~~g~~~~~~l~~~LR~d-PDvI~vGEiRd 396 (564)
T TIGR02538 364 VNVNPKIGLTFAAALRSFLRQD-PDIIMVGEIRD 396 (564)
T ss_pred EEeccccCCCHHHHHHHHhccC-CCEEEeCCCCC
Confidence 00000012333445555555 89999999975
No 490
>PF13481 AAA_25: AAA domain; PDB: 1G8Y_J 1OLO_A 1NLF_C.
Probab=96.70 E-value=0.0072 Score=56.40 Aligned_cols=23 Identities=48% Similarity=0.650 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-++|+||||+|||+++..++..+
T Consensus 34 l~~i~g~~g~GKT~~~~~l~~~~ 56 (193)
T PF13481_consen 34 LTLIAGPPGSGKTTLALQLAAAL 56 (193)
T ss_dssp EEEEEECSTSSHHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHHH
Confidence 48999999999999999887654
No 491
>PRK10078 ribose 1,5-bisphosphokinase; Provisional
Probab=96.68 E-value=0.0014 Score=61.31 Aligned_cols=27 Identities=22% Similarity=0.434 Sum_probs=23.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDY 296 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~ 296 (512)
.++|.||+|+||||+++.|+..++.++
T Consensus 4 ~i~l~G~sGsGKsTl~~~l~~~~~~~~ 30 (186)
T PRK10078 4 LIWLMGPSGSGKDSLLAALRQREQTQL 30 (186)
T ss_pred EEEEECCCCCCHHHHHHHHhccCCCeE
Confidence 589999999999999999998877554
No 492
>PRK05480 uridine/cytidine kinase; Provisional
Probab=96.68 E-value=0.0026 Score=60.51 Aligned_cols=36 Identities=22% Similarity=0.262 Sum_probs=28.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC-CCeEEEeCCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG-LDYALMTGGDV 304 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~-~~~~~v~~~~~ 304 (512)
..+.|.|||||||||+++.|+..++ ..+..++..++
T Consensus 7 ~iI~I~G~sGsGKTTl~~~l~~~l~~~~~~~i~~D~~ 43 (209)
T PRK05480 7 IIIGIAGGSGSGKTTVASTIYEELGDESIAVIPQDSY 43 (209)
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhCCCceEEEeCCcc
Confidence 4689999999999999999999984 34555555444
No 493
>PRK12339 2-phosphoglycerate kinase; Provisional
Probab=96.68 E-value=0.0018 Score=61.13 Aligned_cols=28 Identities=32% Similarity=0.453 Sum_probs=25.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDY 296 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~ 296 (512)
.-++++|+||+|||++|+.+|..++..+
T Consensus 4 ~~i~i~G~~G~GKst~a~~l~~~~~~~~ 31 (197)
T PRK12339 4 TIHFIGGIPGVGKTSISGYIARHRAIDI 31 (197)
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 3589999999999999999999987654
No 494
>cd03247 ABCC_cytochrome_bd The CYD subfamily implicated in cytochrome bd biogenesis. The CydC and CydD proteins are important for the formation of cytochrome bd terminal oxidase of E. coli and it has been proposed that they were necessary for biosynthesis of the cytochrome bd quinol oxidase and for periplasmic c-type cytochromes. CydCD were proposed to determine a heterooligomeric complex important for heme export into the periplasm or to be involved in the maintenance of the proper redox state of the periplasmic space. In Bacillus subtilius, the absence of CydCD does not affect the presence of halo-cytochrome c in the membrane and this observation suggests that CydCD proteins are not involved in the export of heme in this organism.
Probab=96.67 E-value=0.018 Score=53.15 Aligned_cols=26 Identities=19% Similarity=0.287 Sum_probs=22.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+...+.|.||+|+|||+|++.++...
T Consensus 27 ~Ge~~~i~G~nGsGKStLl~~l~G~~ 52 (178)
T cd03247 27 QGEKIALLGRSGSGKSTLLQLLTGDL 52 (178)
T ss_pred CCCEEEEECCCCCCHHHHHHHHhccC
Confidence 33468999999999999999998764
No 495
>PLN02199 shikimate kinase
Probab=96.67 E-value=0.0026 Score=63.12 Aligned_cols=33 Identities=24% Similarity=0.355 Sum_probs=29.7
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
..+++|+|++|||||++++.+|+.++.+|+..+
T Consensus 102 ~~~I~LIG~~GSGKSTVgr~LA~~Lg~~fIDtD 134 (303)
T PLN02199 102 GRSMYLVGMMGSGKTTVGKLMSKVLGYTFFDCD 134 (303)
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEehH
Confidence 357999999999999999999999999988654
No 496
>cd03284 ABC_MutS1 MutS1 homolog in eukaryotes. The MutS protein initiates DNA mismatch repair by recognizing mispaired and unpaired bases embedded in duplex DNA and activating endo- and exonucleases to remove the mismatch. Members of the MutS family possess C-terminal domain with a conserved ATPase activity that belongs to the ATP binding cassette (ABC) superfamily. MutS homologs (MSH) have been identified in most prokaryotic and all eukaryotic organisms examined. Prokaryotes have two homologs (MutS1 and MutS2), whereas seven MSH proteins (MSH1 to MSH7) have been identified in eukaryotes. The homodimer MutS1 and heterodimers MSH2-MSH3 and MSH2-MSH6 are primarily involved in mitotic mismatch repair, whereas MSH4-MSH5 is involved in resolution of Holliday junctions during meiosis. All members of the MutS family contain the highly conserved Walker A/B ATPase domain, and many share a common mechanism of action. MutS1, MSH2-MSH3, MSH2-MSH6, and MSH4-MSH5 dimerize to form sliding clam
Probab=96.67 E-value=0.014 Score=55.93 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
.-++|+||+|+|||++.+.++.
T Consensus 31 ~~~~l~Gpn~sGKstllr~i~~ 52 (216)
T cd03284 31 QILLITGPNMAGKSTYLRQVAL 52 (216)
T ss_pred eEEEEECCCCCChHHHHHHHHH
Confidence 3589999999999999999863
No 497
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=96.66 E-value=0.012 Score=59.51 Aligned_cols=40 Identities=20% Similarity=0.229 Sum_probs=29.2
Q ss_pred cCCCCc-ceEEecCCCCchHHHHHHHHHHh---------CCCeEEEeCCC
Q 010366 264 HNAPFR-NMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGD 303 (512)
Q Consensus 264 ~~~p~~-~vLL~GppGtGKT~lA~alA~~l---------~~~~~~v~~~~ 303 (512)
+|.|.+ .++|+||||||||+++-.+|... +...++++...
T Consensus 90 GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~ 139 (310)
T TIGR02236 90 GGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTEN 139 (310)
T ss_pred CCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCC
Confidence 344443 46899999999999999997653 23677777655
No 498
>PRK10263 DNA translocase FtsK; Provisional
Probab=96.66 E-value=0.023 Score=66.26 Aligned_cols=76 Identities=17% Similarity=0.313 Sum_probs=52.8
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC--CCCHHHHccccceeecCCCCHHHHHH
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG--DLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~--~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
.||+|||+..|..... ......+..+.+.- ...++.+|++|.+|+ .+...+.+-|...|-|..-+..+-..
T Consensus 1142 IVVIIDE~AdLm~~~~-----kevE~lI~rLAqkG--RAaGIHLILATQRPsvDVItg~IKAN~ptRIAfrVsS~~DSrt 1214 (1355)
T PRK10263 1142 IVVLVDEFADLMMTVG-----KKVEELIARLAQKA--RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT 1214 (1355)
T ss_pred EEEEEcChHHHHhhhh-----HHHHHHHHHHHHHh--hhcCeEEEEEecCcccccchHHHHhhccceEEEEcCCHHHHHH
Confidence 5899999988754211 12233343443322 456788999999886 56777788888899999999888888
Q ss_pred HHHHH
Q 010366 407 LLKLY 411 (512)
Q Consensus 407 Il~~~ 411 (512)
||...
T Consensus 1215 ILd~~ 1219 (1355)
T PRK10263 1215 ILDQA 1219 (1355)
T ss_pred hcCCc
Confidence 87653
No 499
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=96.65 E-value=0.023 Score=59.97 Aligned_cols=38 Identities=29% Similarity=0.316 Sum_probs=29.1
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDV 304 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~~ 304 (512)
+|..++++||||+||||++..+|..+ |..+..+++..+
T Consensus 98 ~p~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~~D~~ 139 (428)
T TIGR00959 98 PPTVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVACDLY 139 (428)
T ss_pred CCEEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEecccc
Confidence 34679999999999999988888763 456666666543
No 500
>PHA02530 pseT polynucleotide kinase; Provisional
Probab=96.64 E-value=0.0016 Score=65.45 Aligned_cols=31 Identities=35% Similarity=0.447 Sum_probs=25.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
-++|+|||||||||+|+.|+..+. ++..++.
T Consensus 4 liil~G~pGSGKSTla~~L~~~~~-~~~~l~~ 34 (300)
T PHA02530 4 IILTVGVPGSGKSTWAREFAAKNP-KAVNVNR 34 (300)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHCC-CCEEEec
Confidence 588999999999999999999983 3344443
Done!