Query 010366
Match_columns 512
No_of_seqs 490 out of 3118
Neff 8.1
Searched_HMMs 29240
Date Mon Mar 25 05:15:18 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010366.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010366hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4b4t_J 26S protease regulatory 100.0 6.6E-37 2.3E-41 313.9 25.2 240 232-497 141-392 (405)
2 4b4t_L 26S protease subunit RP 100.0 1.2E-37 4.2E-42 324.1 19.3 239 232-496 174-424 (437)
3 4b4t_I 26S protease regulatory 100.0 4.5E-36 1.5E-40 308.4 23.5 240 232-497 175-426 (437)
4 4b4t_H 26S protease regulatory 100.0 1.6E-35 5.4E-40 307.1 23.0 243 232-500 202-456 (467)
5 4b4t_M 26S protease regulatory 100.0 1.8E-35 6.2E-40 307.5 23.2 238 232-495 174-423 (434)
6 4b4t_K 26S protease regulatory 100.0 1.1E-34 3.7E-39 301.5 25.5 238 232-495 165-415 (428)
7 1xwi_A SKD1 protein; VPS4B, AA 100.0 1.4E-29 4.7E-34 256.3 26.1 213 232-470 5-226 (322)
8 3eie_A Vacuolar protein sortin 100.0 4E-30 1.4E-34 260.3 18.0 213 232-470 11-231 (322)
9 2qz4_A Paraplegin; AAA+, SPG7, 100.0 3.5E-29 1.2E-33 245.0 21.4 245 235-504 2-259 (262)
10 2qp9_X Vacuolar protein sortin 100.0 3.5E-29 1.2E-33 256.7 21.5 215 232-472 44-266 (355)
11 3cf2_A TER ATPase, transitiona 100.0 3.5E-31 1.2E-35 293.6 4.8 241 232-498 470-747 (806)
12 1lv7_A FTSH; alpha/beta domain 100.0 5.2E-28 1.8E-32 236.7 24.7 238 232-495 5-253 (257)
13 3cf2_A TER ATPase, transitiona 100.0 1.2E-29 4.2E-34 281.2 13.1 236 232-494 197-459 (806)
14 2ce7_A Cell division protein F 100.0 2.6E-28 8.9E-33 257.6 22.6 239 233-497 10-259 (476)
15 3h4m_A Proteasome-activating n 100.0 8.1E-28 2.8E-32 238.6 24.3 241 232-498 10-262 (285)
16 2zan_A Vacuolar protein sortin 100.0 3.3E-28 1.1E-32 256.6 19.6 213 232-470 127-348 (444)
17 3d8b_A Fidgetin-like protein 1 100.0 2.7E-27 9.1E-32 243.0 23.8 239 232-496 77-336 (357)
18 3b9p_A CG5977-PA, isoform A; A 99.9 5.6E-27 1.9E-31 234.0 21.0 238 232-495 14-273 (297)
19 3cf0_A Transitional endoplasmi 99.9 4.6E-28 1.6E-32 242.9 13.1 238 232-495 8-282 (301)
20 3vfd_A Spastin; ATPase, microt 99.9 1.3E-26 4.4E-31 240.6 22.8 237 232-494 108-365 (389)
21 3hu3_A Transitional endoplasmi 99.9 2.7E-26 9.3E-31 243.9 20.8 240 233-499 198-464 (489)
22 2x8a_A Nuclear valosin-contain 99.9 2.1E-26 7.2E-31 227.6 18.3 241 233-497 4-267 (274)
23 2dhr_A FTSH; AAA+ protein, hex 99.9 2.3E-26 7.8E-31 244.1 19.7 238 234-497 26-274 (499)
24 1ixz_A ATP-dependent metallopr 99.9 7.5E-26 2.6E-30 220.9 20.2 234 232-491 9-253 (254)
25 2r62_A Cell division protease 99.9 1.2E-28 4E-33 242.6 -1.6 241 232-498 4-257 (268)
26 1iy2_A ATP-dependent metallopr 99.9 8E-25 2.7E-29 216.6 22.6 233 233-491 34-277 (278)
27 1qvr_A CLPB protein; coiled co 99.9 3.6E-23 1.2E-27 235.0 26.3 361 36-469 400-814 (854)
28 3pfi_A Holliday junction ATP-d 99.9 3.3E-21 1.1E-25 195.7 25.3 217 232-493 22-253 (338)
29 1ypw_A Transitional endoplasmi 99.9 2.8E-25 9.6E-30 249.8 -6.1 218 232-475 470-699 (806)
30 3uk6_A RUVB-like 2; hexameric 99.9 1.2E-21 4.1E-26 201.1 20.3 222 233-494 38-330 (368)
31 3t15_A Ribulose bisphosphate c 99.9 2.9E-22 9.9E-27 199.9 13.9 174 238-414 6-200 (293)
32 3syl_A Protein CBBX; photosynt 99.9 5.1E-22 1.7E-26 198.9 15.7 202 239-471 31-259 (309)
33 1hqc_A RUVB; extended AAA-ATPa 99.9 9.3E-21 3.2E-25 190.9 23.1 217 232-493 5-237 (324)
34 2c9o_A RUVB-like 1; hexameric 99.9 4.8E-21 1.7E-25 202.7 20.1 231 233-495 31-438 (456)
35 1ofh_A ATP-dependent HSL prote 99.9 3.5E-21 1.2E-25 192.4 15.4 240 239-493 15-298 (310)
36 3pxi_A Negative regulator of g 99.9 1.5E-20 5.2E-25 211.0 21.7 203 238-468 490-718 (758)
37 3u61_B DNA polymerase accessor 99.8 2.5E-20 8.4E-25 188.2 16.6 214 231-493 18-236 (324)
38 1ypw_A Transitional endoplasmi 99.8 2.5E-20 8.4E-25 209.7 17.2 211 233-470 198-418 (806)
39 2chg_A Replication factor C sm 99.8 4.2E-19 1.5E-23 167.4 22.5 205 232-492 10-224 (226)
40 1d2n_A N-ethylmaleimide-sensit 99.8 9.7E-20 3.3E-24 179.4 16.3 205 238-474 32-246 (272)
41 2v1u_A Cell division control p 99.8 1E-18 3.4E-23 179.7 23.7 229 234-496 14-278 (387)
42 3pvs_A Replication-associated 99.8 5E-19 1.7E-23 186.2 20.7 215 232-493 19-243 (447)
43 4fcw_A Chaperone protein CLPB; 99.8 3.2E-19 1.1E-23 178.5 17.9 208 238-470 16-274 (311)
44 3m6a_A ATP-dependent protease 99.8 2.1E-19 7.3E-24 193.7 17.6 229 238-493 80-340 (543)
45 1njg_A DNA polymerase III subu 99.8 1.4E-18 4.7E-23 165.9 21.0 206 232-491 16-248 (250)
46 1in4_A RUVB, holliday junction 99.8 7.3E-18 2.5E-22 171.1 26.2 217 233-494 19-250 (334)
47 3hws_A ATP-dependent CLP prote 99.8 2.9E-19 1E-23 183.4 14.7 238 239-491 15-346 (363)
48 1r6b_X CLPA protein; AAA+, N-t 99.8 9.9E-19 3.4E-23 196.3 19.1 206 238-468 457-709 (758)
49 1sxj_D Activator 1 41 kDa subu 99.8 1.4E-18 4.8E-23 176.8 18.0 210 232-492 30-261 (353)
50 2r44_A Uncharacterized protein 99.8 5.8E-19 2E-23 178.7 14.5 236 238-496 26-299 (331)
51 3bos_A Putative DNA replicatio 99.8 1.7E-18 5.7E-23 166.0 15.7 210 234-492 23-241 (242)
52 2chq_A Replication factor C sm 99.8 2.1E-18 7.3E-23 172.7 15.4 208 232-491 10-223 (319)
53 1iqp_A RFCS; clamp loader, ext 99.8 6.6E-18 2.3E-22 169.7 18.9 204 232-491 18-231 (327)
54 1fnn_A CDC6P, cell division co 99.8 4.3E-17 1.5E-21 167.8 25.3 224 235-494 13-274 (389)
55 1jr3_A DNA polymerase III subu 99.8 1.7E-17 5.7E-22 170.1 21.7 206 232-491 9-241 (373)
56 1g8p_A Magnesium-chelatase 38 99.8 1E-17 3.5E-22 170.3 19.4 248 233-497 18-325 (350)
57 2z4s_A Chromosomal replication 99.8 8.8E-18 3E-22 176.7 19.4 222 232-495 98-333 (440)
58 2qby_B CDC6 homolog 3, cell di 99.8 1.7E-17 5.7E-22 170.8 21.0 215 239-495 20-271 (384)
59 1um8_A ATP-dependent CLP prote 99.8 4.1E-18 1.4E-22 175.7 16.3 238 239-491 21-362 (376)
60 1l8q_A Chromosomal replication 99.8 6E-18 2.1E-22 170.7 16.8 221 233-494 5-240 (324)
61 1sxj_A Activator 1 95 kDa subu 99.8 1.5E-18 5.2E-23 186.3 12.9 220 232-493 32-273 (516)
62 1sxj_B Activator 1 37 kDa subu 99.8 2.6E-17 9E-22 165.0 21.0 205 232-492 14-229 (323)
63 2qby_A CDC6 homolog 1, cell di 99.7 4.3E-17 1.5E-21 167.2 20.5 228 234-496 15-274 (386)
64 1jbk_A CLPB protein; beta barr 99.7 2.1E-18 7.1E-23 158.8 8.7 161 233-408 16-194 (195)
65 1g41_A Heat shock protein HSLU 99.7 7.7E-17 2.6E-21 167.8 21.2 241 239-494 15-433 (444)
66 1r6b_X CLPA protein; AAA+, N-t 99.7 6.2E-17 2.1E-21 181.7 19.9 227 233-494 180-433 (758)
67 2bjv_A PSP operon transcriptio 99.7 1.2E-16 4.2E-21 156.4 19.0 210 237-487 4-250 (265)
68 3pxg_A Negative regulator of g 99.7 4.4E-17 1.5E-21 172.7 16.6 186 232-467 173-378 (468)
69 3te6_A Regulatory protein SIR3 99.7 5.6E-17 1.9E-21 162.3 15.6 160 241-415 22-214 (318)
70 1sxj_C Activator 1 40 kDa subu 99.7 1.6E-16 5.5E-21 161.4 18.9 207 232-492 18-237 (340)
71 1ojl_A Transcriptional regulat 99.7 1.4E-16 4.9E-21 159.4 16.7 210 239-487 2-245 (304)
72 1qvr_A CLPB protein; coiled co 99.7 3.3E-16 1.1E-20 177.8 20.6 205 232-471 163-389 (854)
73 1sxj_E Activator 1 40 kDa subu 99.7 4.8E-16 1.6E-20 158.4 19.7 191 232-470 7-240 (354)
74 2p65_A Hypothetical protein PF 99.7 7.4E-17 2.5E-21 148.0 9.0 154 233-400 16-187 (187)
75 3pxi_A Negative regulator of g 99.7 1.5E-15 5.1E-20 170.4 19.2 189 232-470 173-381 (758)
76 3nbx_X ATPase RAVA; AAA+ ATPas 99.7 2.3E-16 7.8E-21 167.5 11.0 229 239-488 22-280 (500)
77 1a5t_A Delta prime, HOLB; zinc 99.6 1E-14 3.5E-19 147.9 17.6 156 265-465 21-203 (334)
78 3f9v_A Minichromosome maintena 99.6 3E-16 1E-20 170.7 6.7 241 239-497 295-590 (595)
79 1w5s_A Origin recognition comp 99.6 1.1E-13 3.9E-18 143.3 22.4 231 236-494 19-293 (412)
80 3n70_A Transport activator; si 99.6 5E-15 1.7E-19 131.6 10.2 132 240-399 2-144 (145)
81 1ny5_A Transcriptional regulat 99.6 3.2E-15 1.1E-19 154.6 8.1 307 118-490 42-383 (387)
82 3dzd_A Transcriptional regulat 99.5 4.1E-14 1.4E-18 145.2 14.0 284 118-471 42-358 (368)
83 3co5_A Putative two-component 99.5 4.6E-15 1.6E-19 131.6 5.2 132 240-399 5-142 (143)
84 3k1j_A LON protease, ATP-depen 99.5 5.3E-13 1.8E-17 145.8 21.2 224 232-493 34-374 (604)
85 2gno_A DNA polymerase III, gam 99.5 1.1E-13 3.9E-18 138.2 12.4 143 243-412 1-152 (305)
86 4akg_A Glutathione S-transfera 99.3 1.5E-10 5.1E-15 142.4 22.6 139 269-416 1268-1435(2695)
87 3f8t_A Predicted ATPase involv 99.3 8.7E-11 3E-15 121.7 16.2 194 270-498 241-487 (506)
88 3ec2_A DNA replication protein 99.2 1.3E-11 4.4E-16 113.3 7.0 135 233-381 4-145 (180)
89 2kjq_A DNAA-related protein; s 99.1 1.2E-10 4.2E-15 103.7 9.7 106 267-397 35-146 (149)
90 2w58_A DNAI, primosome compone 99.1 1E-10 3.4E-15 109.2 5.5 102 234-339 20-127 (202)
91 2qen_A Walker-type ATPase; unk 99.0 7.4E-09 2.5E-13 104.2 17.8 187 237-467 10-246 (350)
92 2fna_A Conserved hypothetical 99.0 8.1E-09 2.8E-13 104.1 15.7 157 237-414 11-224 (357)
93 1jr3_D DNA polymerase III, del 98.9 8.9E-09 3.1E-13 104.2 14.3 180 269-494 19-209 (343)
94 4akg_A Glutathione S-transfera 98.9 8.3E-08 2.9E-12 118.4 25.1 148 239-410 623-791 (2695)
95 1tue_A Replication protein E1; 98.9 3.2E-09 1.1E-13 98.6 9.4 109 269-400 59-180 (212)
96 3vkg_A Dynein heavy chain, cyt 98.8 6.9E-08 2.4E-12 119.8 20.3 137 270-415 1306-1472(3245)
97 2qgz_A Helicase loader, putati 98.8 1.3E-09 4.4E-14 109.0 1.9 98 234-339 119-226 (308)
98 2r2a_A Uncharacterized protein 98.7 1.4E-08 4.8E-13 94.7 5.8 126 270-402 7-156 (199)
99 2vhj_A Ntpase P4, P4; non- hyd 98.7 3.9E-08 1.3E-12 97.7 8.6 112 269-386 124-242 (331)
100 1u0j_A DNA replication protein 98.7 1.7E-07 5.9E-12 90.7 12.5 117 268-410 104-249 (267)
101 3cmw_A Protein RECA, recombina 98.6 9.1E-08 3.1E-12 113.4 12.5 144 233-378 1014-1217(1706)
102 3kw6_A 26S protease regulatory 98.6 5.5E-08 1.9E-12 76.4 6.7 75 397-496 1-75 (78)
103 2krk_A 26S protease regulatory 98.5 1.6E-07 5.6E-12 75.1 5.6 76 395-495 7-82 (86)
104 3vkg_A Dynein heavy chain, cyt 98.4 3.2E-06 1.1E-10 105.3 17.9 147 239-409 582-750 (3245)
105 3vlf_B 26S protease regulatory 98.3 4.1E-07 1.4E-11 73.1 3.4 79 400-503 2-80 (88)
106 1ye8_A Protein THEP1, hypothet 98.2 3E-06 1E-10 77.4 8.7 26 270-295 2-27 (178)
107 1z6t_A APAF-1, apoptotic prote 98.2 4.5E-05 1.5E-09 82.5 17.9 146 237-413 122-300 (591)
108 3aji_B S6C, proteasome (prosom 98.1 2.3E-06 7.9E-11 67.8 4.4 76 399-499 1-76 (83)
109 1svm_A Large T antigen; AAA+ f 97.9 8.2E-06 2.8E-10 83.3 6.5 112 266-396 167-282 (377)
110 3cmu_A Protein RECA, recombina 97.9 2.2E-05 7.5E-10 94.4 9.8 76 267-343 1426-1521(2050)
111 2orw_A Thymidine kinase; TMTK, 97.8 4.7E-06 1.6E-10 76.5 1.8 30 270-299 5-37 (184)
112 3upu_A ATP-dependent DNA helic 97.8 7.8E-05 2.7E-09 78.3 11.3 53 232-292 17-69 (459)
113 2iut_A DNA translocase FTSK; n 97.7 0.00061 2.1E-08 72.7 16.8 75 328-409 344-420 (574)
114 3sfz_A APAF-1, apoptotic pepti 97.7 0.00052 1.8E-08 80.3 17.8 148 236-412 121-299 (1249)
115 2b8t_A Thymidine kinase; deoxy 97.7 0.0001 3.5E-09 69.6 9.5 114 269-397 13-150 (223)
116 2ehv_A Hypothetical protein PH 97.7 0.00022 7.6E-09 67.7 11.0 33 269-301 31-67 (251)
117 1g5t_A COB(I)alamin adenosyltr 97.7 0.00034 1.2E-08 64.4 11.5 117 269-397 29-178 (196)
118 2r8r_A Sensor protein; KDPD, P 97.7 0.00033 1.1E-08 65.9 11.7 119 270-402 8-168 (228)
119 1qhx_A CPT, protein (chloramph 97.7 3.5E-05 1.2E-09 69.5 4.9 33 269-301 4-36 (178)
120 2cvh_A DNA repair and recombin 97.6 0.00016 5.5E-09 67.3 9.5 35 269-303 21-55 (220)
121 1gvn_B Zeta; postsegregational 97.6 6.9E-05 2.4E-09 73.7 7.1 57 245-301 10-66 (287)
122 2p5t_B PEZT; postsegregational 97.6 4.9E-05 1.7E-09 73.2 5.7 58 247-304 11-68 (253)
123 3trf_A Shikimate kinase, SK; a 97.6 3.1E-05 1.1E-09 70.4 3.9 32 268-299 5-36 (185)
124 1xp8_A RECA protein, recombina 97.6 0.00028 9.7E-09 71.7 10.7 73 269-341 75-166 (366)
125 2dzn_B 26S protease regulatory 97.5 1.3E-05 4.6E-10 63.2 0.3 50 446-495 20-69 (82)
126 2a5y_B CED-4; apoptosis; HET: 97.5 0.0018 6.2E-08 69.4 16.9 143 242-411 131-305 (549)
127 3vaa_A Shikimate kinase, SK; s 97.5 4.9E-05 1.7E-09 70.2 4.0 33 267-299 24-56 (199)
128 2w0m_A SSO2452; RECA, SSPF, un 97.5 0.00028 9.6E-09 66.0 9.0 32 269-300 24-58 (235)
129 1n0w_A DNA repair protein RAD5 97.5 0.00034 1.2E-08 66.1 9.7 35 269-303 25-68 (243)
130 3cmu_A Protein RECA, recombina 97.5 0.0003 1E-08 84.7 10.5 77 267-343 1080-1175(2050)
131 3hr8_A Protein RECA; alpha and 97.5 0.00042 1.4E-08 70.0 10.1 73 269-341 62-153 (356)
132 2zr9_A Protein RECA, recombina 97.4 0.00048 1.6E-08 69.6 10.4 73 269-341 62-153 (349)
133 3kb2_A SPBC2 prophage-derived 97.4 8.7E-05 3E-09 66.2 4.4 31 270-300 3-33 (173)
134 3iij_A Coilin-interacting nucl 97.4 8.4E-05 2.9E-09 67.3 3.9 31 269-299 12-42 (180)
135 2iyv_A Shikimate kinase, SK; t 97.4 9.2E-05 3.1E-09 67.2 3.9 30 270-299 4-33 (184)
136 1u94_A RECA protein, recombina 97.4 0.00047 1.6E-08 69.8 9.5 73 269-341 64-155 (356)
137 2cdn_A Adenylate kinase; phosp 97.4 0.00011 3.7E-09 67.8 4.3 31 269-299 21-51 (201)
138 1zuh_A Shikimate kinase; alpha 97.4 9.3E-05 3.2E-09 66.2 3.7 31 269-299 8-38 (168)
139 1via_A Shikimate kinase; struc 97.4 0.0001 3.5E-09 66.4 4.0 29 270-298 6-34 (175)
140 2ius_A DNA translocase FTSK; n 97.4 0.002 6.9E-08 68.1 14.3 75 329-410 299-375 (512)
141 2z43_A DNA repair and recombin 97.3 0.00096 3.3E-08 66.6 11.0 74 269-342 108-218 (324)
142 1kag_A SKI, shikimate kinase I 97.3 0.00013 4.5E-09 65.3 4.1 29 269-297 5-33 (173)
143 2rhm_A Putative kinase; P-loop 97.3 0.00015 5.2E-09 66.0 4.5 30 269-298 6-35 (193)
144 1y63_A LMAJ004144AAA protein; 97.3 0.0001 3.6E-09 67.1 3.3 31 269-299 11-42 (184)
145 3dm5_A SRP54, signal recogniti 97.3 0.002 7E-08 66.7 12.9 72 267-339 99-194 (443)
146 3io5_A Recombination and repai 97.3 0.00039 1.3E-08 68.8 7.0 79 264-342 24-126 (333)
147 2i3b_A HCR-ntpase, human cance 97.3 0.0005 1.7E-08 63.2 7.3 23 270-292 3-25 (189)
148 1v5w_A DMC1, meiotic recombina 97.3 0.0016 5.3E-08 65.6 11.6 39 265-303 118-166 (343)
149 2c95_A Adenylate kinase 1; tra 97.2 0.00015 5.2E-09 66.2 3.6 31 269-299 10-40 (196)
150 4a74_A DNA repair and recombin 97.2 0.0013 4.4E-08 61.4 10.1 35 269-303 26-69 (231)
151 1zp6_A Hypothetical protein AT 97.2 0.00012 4E-09 66.8 2.8 34 269-302 10-43 (191)
152 3lw7_A Adenylate kinase relate 97.2 0.00013 4.6E-09 64.9 3.1 29 270-299 3-31 (179)
153 2ze6_A Isopentenyl transferase 97.2 0.00019 6.3E-09 69.2 4.3 32 270-301 3-34 (253)
154 1e6c_A Shikimate kinase; phosp 97.2 0.00021 7.1E-09 63.9 4.3 29 270-298 4-32 (173)
155 3t61_A Gluconokinase; PSI-biol 97.2 0.00026 9E-09 65.3 4.8 30 269-298 19-48 (202)
156 1tev_A UMP-CMP kinase; ploop, 97.2 0.00022 7.6E-09 64.8 4.2 30 269-298 4-33 (196)
157 1aky_A Adenylate kinase; ATP:A 97.2 0.00024 8.4E-09 66.5 4.5 31 269-299 5-35 (220)
158 2vli_A Antibiotic resistance p 97.2 0.00018 6.2E-09 65.0 3.4 29 269-297 6-34 (183)
159 1knq_A Gluconate kinase; ALFA/ 97.2 0.00029 1E-08 63.2 4.6 30 268-297 8-37 (175)
160 3cm0_A Adenylate kinase; ATP-b 97.2 0.00023 7.7E-09 64.6 3.8 29 270-298 6-34 (186)
161 2pez_A Bifunctional 3'-phospho 97.2 0.00034 1.2E-08 63.2 5.0 35 267-301 4-41 (179)
162 2pt5_A Shikimate kinase, SK; a 97.1 0.00023 7.9E-09 63.4 3.7 30 270-299 2-31 (168)
163 3dl0_A Adenylate kinase; phosp 97.1 0.00022 7.5E-09 66.5 3.6 30 270-299 2-31 (216)
164 3fb4_A Adenylate kinase; psych 97.1 0.00023 7.9E-09 66.3 3.7 30 270-299 2-31 (216)
165 3be4_A Adenylate kinase; malar 97.1 0.00022 7.7E-09 66.7 3.6 31 269-299 6-36 (217)
166 2bwj_A Adenylate kinase 5; pho 97.1 0.00021 7.1E-09 65.4 3.3 30 269-298 13-42 (199)
167 1ukz_A Uridylate kinase; trans 97.1 0.00023 7.7E-09 65.7 3.5 31 269-299 16-46 (203)
168 3tlx_A Adenylate kinase 2; str 97.1 0.00031 1.1E-08 67.1 4.6 33 267-299 28-60 (243)
169 1ly1_A Polynucleotide kinase; 97.1 0.0002 6.7E-09 64.4 2.9 27 269-295 3-30 (181)
170 2zts_A Putative uncharacterize 97.1 0.0037 1.3E-07 59.0 12.0 33 269-301 31-67 (251)
171 1ak2_A Adenylate kinase isoenz 97.1 0.00034 1.2E-08 66.2 4.6 31 269-299 17-47 (233)
172 1kht_A Adenylate kinase; phosp 97.1 0.00026 8.8E-09 64.3 3.6 25 269-293 4-28 (192)
173 1pzn_A RAD51, DNA repair and r 97.1 0.0029 1E-07 63.8 11.6 35 269-303 132-175 (349)
174 1qf9_A UMP/CMP kinase, protein 97.1 0.00032 1.1E-08 63.7 3.9 31 269-299 7-37 (194)
175 1zd8_A GTP:AMP phosphotransfer 97.1 0.00024 8.1E-09 67.0 3.1 31 269-299 8-38 (227)
176 3e1s_A Exodeoxyribonuclease V, 97.1 0.0016 5.4E-08 70.2 9.9 31 269-299 205-238 (574)
177 3umf_A Adenylate kinase; rossm 97.1 0.00033 1.1E-08 65.8 4.0 29 269-297 30-58 (217)
178 3sr0_A Adenylate kinase; phosp 97.0 0.00038 1.3E-08 64.9 4.1 29 270-298 2-30 (206)
179 4eun_A Thermoresistant glucoki 97.0 0.0004 1.4E-08 64.0 4.2 35 268-304 29-63 (200)
180 1vt4_I APAF-1 related killer D 97.0 0.0055 1.9E-07 69.6 13.9 56 241-303 130-191 (1221)
181 1zak_A Adenylate kinase; ATP:A 97.0 0.00036 1.2E-08 65.5 3.8 30 269-298 6-35 (222)
182 2dr3_A UPF0273 protein PH0284; 97.0 0.0018 6.2E-08 61.1 8.7 33 269-301 24-59 (247)
183 2z0h_A DTMP kinase, thymidylat 97.0 0.0012 4.2E-08 60.1 7.0 31 271-301 3-36 (197)
184 3kl4_A SRP54, signal recogniti 97.0 0.0033 1.1E-07 65.1 10.8 36 267-302 96-134 (433)
185 2pbr_A DTMP kinase, thymidylat 97.0 0.00064 2.2E-08 61.8 4.9 31 270-300 2-35 (195)
186 1e4v_A Adenylate kinase; trans 96.9 0.00053 1.8E-08 63.9 4.3 30 270-299 2-31 (214)
187 3a4m_A L-seryl-tRNA(SEC) kinas 96.9 0.00069 2.3E-08 65.4 5.0 33 269-301 5-40 (260)
188 3cmw_A Protein RECA, recombina 96.9 0.0019 6.6E-08 77.0 9.5 76 268-343 34-128 (1706)
189 3uie_A Adenylyl-sulfate kinase 96.9 0.00084 2.9E-08 61.8 5.3 35 267-301 24-61 (200)
190 2eyu_A Twitching motility prot 96.9 0.001 3.5E-08 64.3 5.9 26 267-292 24-49 (261)
191 2fz4_A DNA repair protein RAD2 96.9 0.0016 5.6E-08 61.8 7.3 31 270-300 110-140 (237)
192 1cke_A CK, MSSA, protein (cyti 96.9 0.00063 2.2E-08 63.7 4.3 28 270-297 7-34 (227)
193 3crm_A TRNA delta(2)-isopenten 96.9 0.00054 1.8E-08 68.2 3.9 33 269-301 6-38 (323)
194 2jaq_A Deoxyguanosine kinase; 96.9 0.00058 2E-08 62.6 3.9 28 270-297 2-29 (205)
195 2wwf_A Thymidilate kinase, put 96.9 0.00051 1.8E-08 63.5 3.5 27 269-295 11-37 (212)
196 1nn5_A Similar to deoxythymidy 96.9 0.00056 1.9E-08 63.3 3.6 25 269-293 10-34 (215)
197 2xb4_A Adenylate kinase; ATP-b 96.8 0.00066 2.2E-08 63.8 4.1 30 270-299 2-31 (223)
198 1nks_A Adenylate kinase; therm 96.8 0.00039 1.3E-08 63.1 2.4 31 270-300 3-36 (194)
199 2v54_A DTMP kinase, thymidylat 96.8 0.00069 2.4E-08 62.2 4.0 32 269-300 5-37 (204)
200 2if2_A Dephospho-COA kinase; a 96.8 0.00049 1.7E-08 63.4 2.9 30 270-300 3-32 (204)
201 3lda_A DNA repair protein RAD5 96.8 0.0056 1.9E-07 62.8 11.0 35 269-303 179-222 (400)
202 1nlf_A Regulatory protein REPA 96.8 0.0059 2E-07 59.2 10.7 24 269-292 31-54 (279)
203 1w4r_A Thymidine kinase; type 96.8 0.0028 9.7E-08 58.1 7.5 68 269-339 21-103 (195)
204 3ake_A Cytidylate kinase; CMP 96.7 0.00094 3.2E-08 61.4 4.2 30 270-299 4-33 (208)
205 3jvv_A Twitching mobility prot 96.7 0.00076 2.6E-08 68.3 3.8 68 269-337 124-206 (356)
206 1jjv_A Dephospho-COA kinase; P 96.7 0.00076 2.6E-08 62.3 3.6 28 270-298 4-31 (206)
207 1cr0_A DNA primase/helicase; R 96.7 0.0054 1.9E-07 60.0 10.0 32 269-300 36-71 (296)
208 3r20_A Cytidylate kinase; stru 96.7 0.00097 3.3E-08 63.3 4.3 29 269-297 10-38 (233)
209 2bbw_A Adenylate kinase 4, AK4 96.7 0.001 3.6E-08 63.3 4.6 30 268-297 27-56 (246)
210 3nwj_A ATSK2; P loop, shikimat 96.7 0.001 3.4E-08 64.0 4.2 31 269-299 49-79 (250)
211 2plr_A DTMP kinase, probable t 96.7 0.00088 3E-08 61.7 3.7 27 269-295 5-31 (213)
212 2i1q_A DNA repair and recombin 96.7 0.0047 1.6E-07 61.3 9.2 23 269-291 99-121 (322)
213 2grj_A Dephospho-COA kinase; T 96.7 0.00082 2.8E-08 61.8 3.3 30 270-299 14-43 (192)
214 1xx6_A Thymidine kinase; NESG, 96.7 0.0027 9.3E-08 58.3 6.7 31 269-299 9-42 (191)
215 2qor_A Guanylate kinase; phosp 96.7 0.001 3.5E-08 61.5 3.9 27 267-293 11-37 (204)
216 1vma_A Cell division protein F 96.7 0.0052 1.8E-07 60.7 9.2 35 267-301 103-140 (306)
217 2px0_A Flagellar biosynthesis 96.6 0.0088 3E-07 58.8 10.7 37 267-303 104-144 (296)
218 3lxw_A GTPase IMAP family memb 96.6 0.041 1.4E-06 52.3 15.1 23 269-291 22-44 (247)
219 2pt7_A CAG-ALFA; ATPase, prote 96.6 0.002 6.9E-08 64.4 5.8 68 270-338 173-251 (330)
220 1uj2_A Uridine-cytidine kinase 96.6 0.0013 4.4E-08 63.0 4.1 38 269-306 23-68 (252)
221 2r6a_A DNAB helicase, replicat 96.6 0.0066 2.3E-07 63.4 9.9 33 269-301 204-240 (454)
222 3foz_A TRNA delta(2)-isopenten 96.6 0.0014 4.7E-08 64.7 4.3 33 269-301 11-43 (316)
223 4e22_A Cytidylate kinase; P-lo 96.6 0.0014 4.9E-08 62.8 4.4 29 269-297 28-56 (252)
224 3a8t_A Adenylate isopentenyltr 96.6 0.001 3.5E-08 66.5 3.3 33 269-301 41-73 (339)
225 1uf9_A TT1252 protein; P-loop, 96.5 0.0014 4.9E-08 59.9 4.0 29 269-298 9-37 (203)
226 3bh0_A DNAB-like replicative h 96.5 0.006 2E-07 60.5 8.4 33 269-301 69-104 (315)
227 1kgd_A CASK, peripheral plasma 96.5 0.0016 5.3E-08 59.0 3.8 25 269-293 6-30 (180)
228 3zvl_A Bifunctional polynucleo 96.5 0.0054 1.9E-07 63.3 8.3 34 269-304 259-292 (416)
229 3tau_A Guanylate kinase, GMP k 96.5 0.0015 5E-08 60.7 3.6 26 268-293 8-33 (208)
230 1ex7_A Guanylate kinase; subst 96.5 0.0021 7.1E-08 58.8 4.5 26 270-295 3-28 (186)
231 2ged_A SR-beta, signal recogni 96.5 0.011 3.8E-07 53.2 9.4 24 268-291 48-71 (193)
232 4i1u_A Dephospho-COA kinase; s 96.4 0.006 2.1E-07 56.8 7.5 125 270-410 11-152 (210)
233 2v3c_C SRP54, signal recogniti 96.4 0.0083 2.9E-07 62.2 9.3 35 268-302 99-136 (432)
234 1q3t_A Cytidylate kinase; nucl 96.4 0.0021 7.2E-08 60.8 4.4 30 269-298 17-46 (236)
235 2h92_A Cytidylate kinase; ross 96.4 0.0022 7.4E-08 59.7 4.3 31 269-299 4-34 (219)
236 2q6t_A DNAB replication FORK h 96.4 0.0097 3.3E-07 61.9 9.7 33 269-301 201-237 (444)
237 1w36_D RECD, exodeoxyribonucle 96.4 0.011 3.7E-07 64.2 10.3 24 269-292 165-188 (608)
238 2bdt_A BH3686; alpha-beta prot 96.4 0.0021 7.3E-08 58.3 4.0 24 270-293 4-27 (189)
239 1rz3_A Hypothetical protein rb 96.4 0.0048 1.6E-07 56.8 6.4 34 268-301 22-58 (201)
240 2yvu_A Probable adenylyl-sulfa 96.4 0.0021 7.3E-08 58.2 3.9 34 267-300 12-48 (186)
241 1vht_A Dephospho-COA kinase; s 96.4 0.0021 7.3E-08 59.8 4.0 30 269-299 5-34 (218)
242 2ewv_A Twitching motility prot 96.4 0.0025 8.7E-08 64.8 4.8 26 267-292 135-160 (372)
243 2j41_A Guanylate kinase; GMP, 96.3 0.0018 6.3E-08 59.4 3.4 24 269-292 7-30 (207)
244 1m7g_A Adenylylsulfate kinase; 96.3 0.0025 8.5E-08 59.1 4.3 33 269-301 26-62 (211)
245 2qt1_A Nicotinamide riboside k 96.3 0.0013 4.6E-08 60.6 2.3 29 269-297 22-51 (207)
246 3d3q_A TRNA delta(2)-isopenten 96.3 0.002 6.7E-08 64.5 3.5 30 270-299 9-38 (340)
247 3c8u_A Fructokinase; YP_612366 96.3 0.0042 1.4E-07 57.5 5.4 27 267-293 21-47 (208)
248 3exa_A TRNA delta(2)-isopenten 96.3 0.0019 6.5E-08 63.8 3.1 29 270-298 5-33 (322)
249 2axn_A 6-phosphofructo-2-kinas 96.2 0.012 4.1E-07 62.5 9.4 32 269-300 36-70 (520)
250 3tr0_A Guanylate kinase, GMP k 96.2 0.0027 9.2E-08 58.2 3.8 25 269-293 8-32 (205)
251 3eph_A TRNA isopentenyltransfe 96.2 0.0024 8.3E-08 65.2 3.8 31 269-299 3-33 (409)
252 2ga8_A Hypothetical 39.9 kDa p 96.2 0.0025 8.4E-08 64.1 3.7 30 269-298 25-54 (359)
253 3fdi_A Uncharacterized protein 96.2 0.0029 1E-07 58.5 4.0 29 270-298 8-36 (201)
254 2f6r_A COA synthase, bifunctio 96.2 0.0029 1E-07 61.7 4.2 30 269-299 76-105 (281)
255 1c9k_A COBU, adenosylcobinamid 96.2 0.0061 2.1E-07 55.3 6.0 33 271-304 2-34 (180)
256 3asz_A Uridine kinase; cytidin 96.2 0.0023 7.9E-08 59.1 3.2 34 267-300 5-38 (211)
257 1ltq_A Polynucleotide kinase; 96.2 0.0024 8.2E-08 62.6 3.3 29 269-297 3-32 (301)
258 3ney_A 55 kDa erythrocyte memb 96.2 0.0042 1.4E-07 57.3 4.7 25 269-293 20-44 (197)
259 1lvg_A Guanylate kinase, GMP k 96.2 0.0027 9.4E-08 58.4 3.5 25 269-293 5-29 (198)
260 3a00_A Guanylate kinase, GMP k 96.2 0.0028 9.7E-08 57.5 3.5 24 270-293 3-26 (186)
261 2xxa_A Signal recognition part 96.1 0.017 5.9E-07 59.8 9.5 38 267-304 99-140 (433)
262 1t6n_A Probable ATP-dependent 96.1 0.11 3.7E-06 47.8 14.3 23 269-291 52-74 (220)
263 1j8m_F SRP54, signal recogniti 96.1 0.017 5.8E-07 56.8 8.9 35 268-302 98-135 (297)
264 2qmh_A HPR kinase/phosphorylas 96.0 0.0026 9E-08 58.5 2.7 25 269-293 35-59 (205)
265 1zu4_A FTSY; GTPase, signal re 96.0 0.022 7.4E-07 56.6 9.5 35 267-301 104-141 (320)
266 3def_A T7I23.11 protein; chlor 96.0 0.015 5E-07 55.9 8.0 25 267-291 35-59 (262)
267 2j9r_A Thymidine kinase; TK1, 96.0 0.013 4.5E-07 54.5 7.3 31 270-300 30-63 (214)
268 4a1f_A DNAB helicase, replicat 96.0 0.0098 3.4E-07 59.5 6.8 33 269-301 47-82 (338)
269 1q57_A DNA primase/helicase; d 96.0 0.02 7E-07 60.4 9.6 33 269-301 243-279 (503)
270 2j37_W Signal recognition part 95.9 0.02 6.8E-07 60.4 9.2 35 267-301 100-137 (504)
271 3llm_A ATP-dependent RNA helic 95.9 0.036 1.2E-06 52.1 10.0 20 269-288 77-96 (235)
272 3thx_A DNA mismatch repair pro 95.9 0.03 1E-06 63.5 10.8 20 270-289 664-683 (934)
273 2orv_A Thymidine kinase; TP4A 95.8 0.039 1.3E-06 51.9 9.8 67 270-339 21-102 (234)
274 3bgw_A DNAB-like replicative h 95.8 0.028 9.4E-07 58.5 9.8 33 269-301 198-233 (444)
275 1x6v_B Bifunctional 3'-phospho 95.8 0.0069 2.4E-07 65.5 5.2 35 267-301 51-88 (630)
276 1odf_A YGR205W, hypothetical 3 95.8 0.011 3.7E-07 57.9 6.2 27 267-293 30-56 (290)
277 3p32_A Probable GTPase RV1496/ 95.8 0.041 1.4E-06 55.4 10.5 32 269-300 80-114 (355)
278 1z6g_A Guanylate kinase; struc 95.7 0.006 2E-07 57.0 3.8 24 269-292 24-47 (218)
279 3thx_B DNA mismatch repair pro 95.7 0.027 9.1E-07 63.7 9.6 22 269-290 674-695 (918)
280 3gmt_A Adenylate kinase; ssgci 95.7 0.0072 2.5E-07 57.0 4.2 30 270-299 10-39 (230)
281 1h65_A Chloroplast outer envel 95.7 0.019 6.6E-07 55.3 7.4 26 266-291 37-62 (270)
282 2yhs_A FTSY, cell division pro 95.7 0.071 2.4E-06 55.9 12.1 25 268-292 293-317 (503)
283 2oap_1 GSPE-2, type II secreti 95.7 0.005 1.7E-07 65.3 3.2 68 269-337 261-343 (511)
284 4gp7_A Metallophosphoesterase; 95.6 0.0055 1.9E-07 54.9 3.0 20 269-288 10-29 (171)
285 1qde_A EIF4A, translation init 95.6 0.026 9E-07 52.2 7.8 16 269-284 52-67 (224)
286 3lxx_A GTPase IMAP family memb 95.6 0.021 7.3E-07 53.7 7.2 23 269-291 30-52 (239)
287 1kao_A RAP2A; GTP-binding prot 95.6 0.096 3.3E-06 45.2 11.0 22 270-291 5-26 (167)
288 1gtv_A TMK, thymidylate kinase 95.6 0.003 1E-07 58.3 1.1 24 270-293 2-25 (214)
289 1a7j_A Phosphoribulokinase; tr 95.6 0.0041 1.4E-07 61.0 2.1 36 270-305 7-45 (290)
290 1s96_A Guanylate kinase, GMP k 95.6 0.0072 2.5E-07 56.6 3.7 25 269-293 17-41 (219)
291 1bif_A 6-phosphofructo-2-kinas 95.6 0.021 7.3E-07 59.7 7.7 25 269-293 40-64 (469)
292 1znw_A Guanylate kinase, GMP k 95.5 0.0076 2.6E-07 55.7 3.7 25 269-293 21-45 (207)
293 1htw_A HI0065; nucleotide-bind 95.5 0.0079 2.7E-07 53.4 3.7 24 269-292 34-57 (158)
294 3hdt_A Putative kinase; struct 95.5 0.0072 2.5E-07 56.8 3.6 29 270-298 16-44 (223)
295 1ls1_A Signal recognition part 95.5 0.042 1.4E-06 53.8 9.3 35 267-301 97-134 (295)
296 3b9q_A Chloroplast SRP recepto 95.5 0.037 1.3E-06 54.5 8.7 26 267-292 99-124 (302)
297 1vec_A ATP-dependent RNA helic 95.5 0.033 1.1E-06 50.8 7.8 18 269-286 41-58 (206)
298 4eaq_A DTMP kinase, thymidylat 95.5 0.0087 3E-07 56.4 3.9 30 269-298 27-58 (229)
299 2ffh_A Protein (FFH); SRP54, s 95.4 0.045 1.6E-06 56.4 9.4 35 267-301 97-134 (425)
300 2jeo_A Uridine-cytidine kinase 95.4 0.0091 3.1E-07 56.7 3.9 27 269-295 26-52 (245)
301 1tf7_A KAIC; homohexamer, hexa 95.4 0.048 1.7E-06 57.9 9.8 103 269-378 282-416 (525)
302 3tqc_A Pantothenate kinase; bi 95.3 0.019 6.6E-07 57.0 6.1 25 269-293 93-117 (321)
303 1p9r_A General secretion pathw 95.3 0.02 7E-07 59.0 6.4 49 236-293 144-192 (418)
304 3k53_A Ferrous iron transport 95.3 0.066 2.2E-06 51.5 9.7 23 269-291 4-26 (271)
305 3aez_A Pantothenate kinase; tr 95.3 0.021 7E-07 56.6 6.1 27 267-293 89-115 (312)
306 3fe2_A Probable ATP-dependent 95.3 0.034 1.2E-06 52.4 7.5 18 269-286 67-84 (242)
307 2gxq_A Heat resistant RNA depe 95.3 0.057 1.9E-06 49.1 8.8 23 269-291 39-62 (207)
308 1rj9_A FTSY, signal recognitio 95.3 0.011 3.9E-07 58.2 4.1 38 267-304 101-140 (304)
309 2v9p_A Replication protein E1; 95.2 0.011 3.7E-07 58.4 3.8 27 267-293 125-151 (305)
310 3lnc_A Guanylate kinase, GMP k 95.2 0.0066 2.3E-07 57.0 2.2 24 269-292 28-52 (231)
311 3vkw_A Replicase large subunit 95.2 0.073 2.5E-06 55.0 10.1 22 269-290 162-183 (446)
312 4b3f_X DNA-binding protein smu 95.2 0.019 6.3E-07 62.8 6.0 37 243-289 190-226 (646)
313 1wb9_A DNA mismatch repair pro 95.2 0.057 1.9E-06 60.3 9.9 23 269-291 608-630 (800)
314 3dkp_A Probable ATP-dependent 95.1 0.07 2.4E-06 50.2 9.1 17 269-285 67-83 (245)
315 3iuy_A Probable ATP-dependent 95.1 0.084 2.9E-06 49.0 9.5 18 269-286 58-75 (228)
316 1m8p_A Sulfate adenylyltransfe 95.0 0.015 5.2E-07 62.4 4.6 33 269-301 397-433 (573)
317 1xjc_A MOBB protein homolog; s 95.0 0.014 4.9E-07 52.3 3.6 33 269-301 5-40 (169)
318 3e70_C DPA, signal recognition 94.9 0.015 5.1E-07 58.0 3.9 26 267-292 128-153 (328)
319 1sky_E F1-ATPase, F1-ATP synth 94.9 0.045 1.6E-06 56.9 7.5 23 270-292 153-175 (473)
320 3dz8_A RAS-related protein RAB 94.9 0.072 2.5E-06 47.8 8.2 23 270-292 25-47 (191)
321 4dsu_A GTPase KRAS, isoform 2B 94.9 0.11 3.9E-06 45.9 9.4 22 270-291 6-27 (189)
322 3pey_A ATP-dependent RNA helic 94.9 0.26 8.8E-06 49.2 13.0 20 269-288 45-64 (395)
323 3iby_A Ferrous iron transport 94.8 0.16 5.5E-06 48.4 10.8 22 270-291 3-24 (256)
324 3tqf_A HPR(Ser) kinase; transf 94.8 0.014 4.6E-07 52.5 2.9 23 269-291 17-39 (181)
325 3pqc_A Probable GTP-binding pr 94.8 0.089 3E-06 46.9 8.5 22 270-291 25-46 (195)
326 3bor_A Human initiation factor 94.8 0.038 1.3E-06 51.9 6.2 18 269-286 68-85 (237)
327 2pl3_A Probable ATP-dependent 94.8 0.061 2.1E-06 50.3 7.6 18 269-286 63-80 (236)
328 3iev_A GTP-binding protein ERA 94.8 0.077 2.6E-06 52.2 8.6 26 266-291 8-33 (308)
329 1s2m_A Putative ATP-dependent 94.8 0.096 3.3E-06 52.8 9.6 21 269-289 59-79 (400)
330 3kta_A Chromosome segregation 94.8 0.019 6.7E-07 51.4 3.9 25 269-293 27-51 (182)
331 3qf4_A ABC transporter, ATP-bi 94.7 0.19 6.4E-06 54.1 12.2 27 267-293 368-394 (587)
332 3ber_A Probable ATP-dependent 94.7 0.063 2.1E-06 50.9 7.6 18 269-286 81-98 (249)
333 3ice_A Transcription terminati 94.7 0.044 1.5E-06 55.6 6.6 24 269-292 175-198 (422)
334 1np6_A Molybdopterin-guanine d 94.7 0.019 6.5E-07 51.8 3.6 24 269-292 7-30 (174)
335 2v6i_A RNA helicase; membrane, 94.7 0.05 1.7E-06 56.3 7.3 17 269-285 3-19 (431)
336 1hv8_A Putative ATP-dependent 94.7 0.11 3.9E-06 51.3 9.8 23 269-291 45-67 (367)
337 1xti_A Probable ATP-dependent 94.7 0.37 1.3E-05 48.2 13.7 21 269-289 46-66 (391)
338 1ewq_A DNA mismatch repair pro 94.7 0.083 2.8E-06 58.6 9.4 23 269-291 577-599 (765)
339 2www_A Methylmalonic aciduria 94.7 0.097 3.3E-06 52.5 9.1 25 268-292 74-98 (349)
340 3t34_A Dynamin-related protein 94.6 0.11 3.7E-06 52.2 9.5 21 270-290 36-56 (360)
341 3ly5_A ATP-dependent RNA helic 94.6 0.06 2.1E-06 51.5 7.2 18 269-286 92-109 (262)
342 3tif_A Uncharacterized ABC tra 94.6 0.017 5.7E-07 54.7 3.0 25 269-293 32-56 (235)
343 3tmk_A Thymidylate kinase; pho 94.5 0.039 1.3E-06 51.5 5.5 32 269-300 6-37 (216)
344 2og2_A Putative signal recogni 94.5 0.02 6.8E-07 57.8 3.6 26 267-292 156-181 (359)
345 1p5z_B DCK, deoxycytidine kina 94.5 0.0086 2.9E-07 57.5 0.9 26 268-293 24-49 (263)
346 2p67_A LAO/AO transport system 94.5 0.13 4.5E-06 51.3 9.7 25 268-292 56-80 (341)
347 1zd9_A ADP-ribosylation factor 94.5 0.061 2.1E-06 48.2 6.6 22 270-291 24-45 (188)
348 3v9p_A DTMP kinase, thymidylat 94.5 0.032 1.1E-06 52.5 4.8 31 270-300 27-64 (227)
349 1sq5_A Pantothenate kinase; P- 94.5 0.021 7.1E-07 56.3 3.6 25 269-293 81-105 (308)
350 3b85_A Phosphate starvation-in 94.4 0.017 5.9E-07 53.6 2.8 22 270-291 24-45 (208)
351 2qm8_A GTPase/ATPase; G protei 94.4 0.06 2.1E-06 53.8 7.0 24 269-292 56-79 (337)
352 2cbz_A Multidrug resistance-as 94.4 0.019 6.4E-07 54.4 3.0 24 269-292 32-55 (237)
353 1g8f_A Sulfate adenylyltransfe 94.4 0.026 9E-07 59.6 4.4 26 269-294 396-421 (511)
354 2pcj_A ABC transporter, lipopr 94.4 0.017 5.8E-07 54.2 2.6 24 270-293 32-55 (224)
355 3t1o_A Gliding protein MGLA; G 94.4 0.27 9.1E-06 43.7 10.6 23 270-292 16-38 (198)
356 2ocp_A DGK, deoxyguanosine kin 94.4 0.02 6.9E-07 54.0 3.1 25 269-293 3-27 (241)
357 2f1r_A Molybdopterin-guanine d 94.4 0.013 4.3E-07 52.8 1.6 24 270-293 4-27 (171)
358 2onk_A Molybdate/tungstate ABC 94.3 0.023 7.7E-07 54.0 3.4 25 269-293 25-49 (240)
359 3oiy_A Reverse gyrase helicase 94.3 0.12 4.1E-06 52.6 9.1 20 269-288 37-56 (414)
360 4edh_A DTMP kinase, thymidylat 94.2 0.025 8.5E-07 52.7 3.4 31 270-300 8-41 (213)
361 2gza_A Type IV secretion syste 94.2 0.019 6.5E-07 58.0 2.8 32 269-300 176-209 (361)
362 3sop_A Neuronal-specific septi 94.2 0.022 7.7E-07 55.0 3.1 23 270-292 4-26 (270)
363 2xau_A PRE-mRNA-splicing facto 94.2 0.086 2.9E-06 58.7 8.3 55 233-290 69-131 (773)
364 2oxc_A Probable ATP-dependent 94.2 0.1 3.4E-06 48.7 7.6 17 269-285 62-78 (230)
365 2dyk_A GTP-binding protein; GT 94.2 0.026 9E-07 48.8 3.2 22 270-291 3-24 (161)
366 2f9l_A RAB11B, member RAS onco 94.2 0.025 8.7E-07 51.4 3.2 22 270-291 7-28 (199)
367 3szr_A Interferon-induced GTP- 94.2 0.13 4.4E-06 55.6 9.3 23 270-292 47-69 (608)
368 1q0u_A Bstdead; DEAD protein, 94.1 0.34 1.2E-05 44.5 11.0 18 269-286 42-59 (219)
369 1b0u_A Histidine permease; ABC 94.1 0.023 8E-07 54.7 3.0 25 269-293 33-57 (262)
370 1nrj_B SR-beta, signal recogni 94.1 0.031 1.1E-06 51.4 3.7 24 269-292 13-36 (218)
371 1sgw_A Putative ABC transporte 94.1 0.023 8E-07 53.0 2.9 24 270-293 37-60 (214)
372 1oix_A RAS-related protein RAB 94.1 0.024 8.4E-07 51.2 3.0 23 270-292 31-53 (191)
373 2o8b_B DNA mismatch repair pro 94.1 0.17 5.8E-06 58.0 10.5 21 269-289 790-810 (1022)
374 3i8s_A Ferrous iron transport 94.1 0.27 9.2E-06 47.3 10.6 23 269-291 4-26 (274)
375 2xtp_A GTPase IMAP family memb 94.0 0.12 4.1E-06 49.1 7.9 24 268-291 22-45 (260)
376 3fvq_A Fe(3+) IONS import ATP- 94.0 0.022 7.7E-07 57.3 2.8 23 270-292 32-54 (359)
377 1mv5_A LMRA, multidrug resista 94.0 0.023 8E-07 54.0 2.8 24 269-292 29-52 (243)
378 3eiq_A Eukaryotic initiation f 94.0 0.25 8.6E-06 49.8 10.7 19 269-287 78-96 (414)
379 2d2e_A SUFC protein; ABC-ATPas 94.0 0.029 1E-06 53.5 3.4 22 270-291 31-52 (250)
380 2gk6_A Regulator of nonsense t 94.0 0.027 9.2E-07 61.2 3.5 22 270-291 197-218 (624)
381 2zu0_C Probable ATP-dependent 94.0 0.031 1.1E-06 54.0 3.5 23 269-291 47-69 (267)
382 2ghi_A Transport protein; mult 93.9 0.027 9.1E-07 54.2 3.0 24 269-292 47-70 (260)
383 1g6h_A High-affinity branched- 93.9 0.026 8.7E-07 54.2 2.9 23 270-292 35-57 (257)
384 2ff7_A Alpha-hemolysin translo 93.9 0.026 8.8E-07 53.8 2.9 24 269-292 36-59 (247)
385 3cr8_A Sulfate adenylyltranfer 93.9 0.024 8.2E-07 60.5 2.9 25 269-293 370-394 (552)
386 2pze_A Cystic fibrosis transme 93.9 0.026 9E-07 53.1 2.9 25 269-293 35-59 (229)
387 1lw7_A Transcriptional regulat 93.9 0.027 9.2E-07 56.9 3.1 27 269-295 171-197 (365)
388 3lv8_A DTMP kinase, thymidylat 93.9 0.033 1.1E-06 52.7 3.6 25 269-293 28-52 (236)
389 1z2a_A RAS-related protein RAB 93.9 0.033 1.1E-06 48.5 3.2 22 270-291 7-28 (168)
390 2olj_A Amino acid ABC transpor 93.9 0.028 9.6E-07 54.2 3.0 25 269-293 51-75 (263)
391 3ozx_A RNAse L inhibitor; ATP 93.9 0.22 7.5E-06 53.0 10.2 23 270-292 296-318 (538)
392 3e2i_A Thymidine kinase; Zn-bi 93.9 0.057 1.9E-06 50.2 4.9 31 270-300 30-63 (219)
393 1ji0_A ABC transporter; ATP bi 93.9 0.027 9.4E-07 53.4 2.9 24 270-293 34-57 (240)
394 2ixe_A Antigen peptide transpo 93.8 0.028 9.7E-07 54.4 3.0 24 269-292 46-69 (271)
395 3gfo_A Cobalt import ATP-bindi 93.8 0.027 9.3E-07 54.6 2.9 23 270-292 36-58 (275)
396 1z47_A CYSA, putative ABC-tran 93.8 0.029 9.8E-07 56.5 3.1 23 270-292 43-65 (355)
397 1u8z_A RAS-related protein RAL 93.8 0.036 1.2E-06 48.0 3.3 23 269-291 5-27 (168)
398 2qi9_C Vitamin B12 import ATP- 93.7 0.029 9.9E-07 53.6 2.9 24 269-292 27-50 (249)
399 1vpl_A ABC transporter, ATP-bi 93.7 0.03 1E-06 53.7 3.0 24 269-292 42-65 (256)
400 4g1u_C Hemin import ATP-bindin 93.7 0.029 9.9E-07 54.1 2.9 24 269-292 38-61 (266)
401 2f7s_A C25KG, RAS-related prot 93.7 0.14 4.6E-06 46.9 7.4 22 270-291 27-48 (217)
402 3ld9_A DTMP kinase, thymidylat 93.7 0.041 1.4E-06 51.6 3.8 26 269-294 22-47 (223)
403 2wji_A Ferrous iron transport 93.7 0.034 1.2E-06 48.8 3.1 21 270-290 5-25 (165)
404 2ce2_X GTPase HRAS; signaling 93.7 0.034 1.2E-06 48.0 3.0 22 270-291 5-26 (166)
405 2yyz_A Sugar ABC transporter, 93.7 0.036 1.2E-06 55.9 3.6 23 270-292 31-53 (359)
406 2zej_A Dardarin, leucine-rich 93.7 0.028 9.6E-07 50.4 2.5 21 270-290 4-24 (184)
407 1yrb_A ATP(GTP)binding protein 93.7 0.072 2.5E-06 50.5 5.6 36 266-301 12-49 (262)
408 2it1_A 362AA long hypothetical 93.7 0.036 1.2E-06 56.0 3.5 23 270-292 31-53 (362)
409 2yz2_A Putative ABC transporte 93.7 0.032 1.1E-06 53.8 3.0 24 269-292 34-57 (266)
410 3rlf_A Maltose/maltodextrin im 93.7 0.036 1.2E-06 56.2 3.5 23 270-292 31-53 (381)
411 4dcu_A GTP-binding protein ENG 93.6 0.11 3.9E-06 53.9 7.4 22 269-290 24-45 (456)
412 1ek0_A Protein (GTP-binding pr 93.6 0.039 1.3E-06 48.0 3.2 22 270-291 5-26 (170)
413 3o8b_A HCV NS3 protease/helica 93.6 0.19 6.4E-06 54.7 9.2 43 328-379 319-361 (666)
414 2ihy_A ABC transporter, ATP-bi 93.6 0.032 1.1E-06 54.2 2.9 24 270-293 49-72 (279)
415 1v43_A Sugar-binding transport 93.6 0.038 1.3E-06 56.0 3.5 23 270-292 39-61 (372)
416 1g29_1 MALK, maltose transport 93.5 0.033 1.1E-06 56.4 3.1 23 270-292 31-53 (372)
417 1z0j_A RAB-22, RAS-related pro 93.5 0.041 1.4E-06 47.9 3.2 23 270-292 8-30 (170)
418 2nq2_C Hypothetical ABC transp 93.5 0.033 1.1E-06 53.3 2.8 23 270-292 33-55 (253)
419 2zj8_A DNA helicase, putative 93.5 0.095 3.2E-06 57.8 6.9 18 269-286 40-57 (720)
420 3con_A GTPase NRAS; structural 93.5 0.033 1.1E-06 49.8 2.7 23 269-291 22-44 (190)
421 2gj8_A MNME, tRNA modification 93.5 0.036 1.2E-06 49.2 2.9 23 269-291 5-27 (172)
422 1wms_A RAB-9, RAB9, RAS-relate 93.5 0.041 1.4E-06 48.4 3.2 23 269-291 8-30 (177)
423 2nzj_A GTP-binding protein REM 93.5 0.039 1.3E-06 48.4 3.0 22 269-290 5-26 (175)
424 3l9o_A ATP-dependent RNA helic 93.5 0.14 4.9E-06 59.2 8.5 20 269-288 200-219 (1108)
425 1ky3_A GTP-binding protein YPT 93.4 0.043 1.5E-06 48.4 3.2 23 269-291 9-31 (182)
426 1g16_A RAS-related protein SEC 93.4 0.041 1.4E-06 47.9 3.0 22 270-291 5-26 (170)
427 1z08_A RAS-related protein RAB 93.4 0.044 1.5E-06 47.8 3.2 22 270-291 8-29 (170)
428 3d31_A Sulfate/molybdate ABC t 93.4 0.032 1.1E-06 56.1 2.5 23 270-292 28-50 (348)
429 4dhe_A Probable GTP-binding pr 93.4 0.24 8.2E-06 45.4 8.5 23 269-291 30-52 (223)
430 1c1y_A RAS-related protein RAP 93.3 0.047 1.6E-06 47.4 3.2 22 270-291 5-26 (167)
431 2wsm_A Hydrogenase expression/ 93.3 0.044 1.5E-06 50.5 3.2 25 269-293 31-55 (221)
432 2vp4_A Deoxynucleoside kinase; 93.2 0.044 1.5E-06 51.4 3.2 28 269-297 21-48 (230)
433 2pjz_A Hypothetical protein ST 93.2 0.035 1.2E-06 53.4 2.5 23 270-292 32-54 (263)
434 1r8s_A ADP-ribosylation factor 93.2 0.048 1.7E-06 47.2 3.2 22 270-291 2-23 (164)
435 3q85_A GTP-binding protein REM 93.2 0.045 1.5E-06 47.7 3.1 20 270-289 4-23 (169)
436 1r2q_A RAS-related protein RAB 93.2 0.049 1.7E-06 47.3 3.2 22 270-291 8-29 (170)
437 2x2e_A Dynamin-1; nitration, h 93.2 0.4 1.4E-05 47.9 10.4 22 269-290 32-53 (353)
438 1f2t_A RAD50 ABC-ATPase; DNA d 93.2 0.05 1.7E-06 47.5 3.2 24 269-292 24-47 (149)
439 4tmk_A Protein (thymidylate ki 93.2 0.046 1.6E-06 50.9 3.2 23 270-292 5-27 (213)
440 2erx_A GTP-binding protein DI- 93.2 0.046 1.6E-06 47.6 3.0 22 270-291 5-26 (172)
441 2wjg_A FEOB, ferrous iron tran 93.1 0.046 1.6E-06 48.7 3.1 23 269-291 8-30 (188)
442 3bc1_A RAS-related protein RAB 93.1 0.049 1.7E-06 48.5 3.2 23 269-291 12-34 (195)
443 3q72_A GTP-binding protein RAD 93.1 0.048 1.6E-06 47.4 3.0 20 270-289 4-23 (166)
444 1wf3_A GTP-binding protein; GT 93.1 0.39 1.3E-05 46.9 10.0 22 270-291 9-30 (301)
445 3gd7_A Fusion complex of cysti 93.1 0.047 1.6E-06 55.7 3.3 24 269-292 48-71 (390)
446 2lkc_A Translation initiation 93.1 0.058 2E-06 47.5 3.6 22 269-290 9-30 (178)
447 2wjy_A Regulator of nonsense t 93.1 0.045 1.5E-06 61.2 3.4 22 270-291 373-394 (800)
448 4f4c_A Multidrug resistance pr 93.1 0.18 6E-06 59.6 8.6 27 267-293 443-469 (1321)
449 1upt_A ARL1, ADP-ribosylation 93.0 0.059 2E-06 47.0 3.5 23 269-291 8-30 (171)
450 1z0f_A RAB14, member RAS oncog 92.9 0.056 1.9E-06 47.5 3.2 23 269-291 16-38 (179)
451 2y8e_A RAB-protein 6, GH09086P 92.9 0.052 1.8E-06 47.7 3.0 23 269-291 15-37 (179)
452 2a9k_A RAS-related protein RAL 92.9 0.052 1.8E-06 48.0 3.0 23 269-291 19-41 (187)
453 3kkq_A RAS-related protein M-R 92.9 0.059 2E-06 47.8 3.4 25 267-291 17-41 (183)
454 2fn4_A P23, RAS-related protei 92.9 0.053 1.8E-06 47.7 3.1 23 269-291 10-32 (181)
455 2bbs_A Cystic fibrosis transme 92.9 0.046 1.6E-06 53.4 2.8 24 269-292 65-88 (290)
456 2p6r_A Afuhel308 helicase; pro 92.9 0.078 2.7E-06 58.3 5.0 18 269-286 41-58 (702)
457 1oxx_K GLCV, glucose, ABC tran 92.9 0.033 1.1E-06 56.0 1.8 23 270-292 33-55 (353)
458 4ag6_A VIRB4 ATPase, type IV s 92.9 0.093 3.2E-06 53.3 5.2 32 269-300 36-70 (392)
459 1svi_A GTP-binding protein YSX 92.9 0.06 2.1E-06 48.3 3.4 23 269-291 24-46 (195)
460 2va8_A SSO2462, SKI2-type heli 92.9 0.13 4.3E-06 56.7 6.7 19 269-287 47-65 (715)
461 2hf9_A Probable hydrogenase ni 92.9 0.06 2.1E-06 49.8 3.5 25 269-293 39-63 (226)
462 2hxs_A RAB-26, RAS-related pro 92.9 0.054 1.9E-06 47.6 3.0 22 269-290 7-28 (178)
463 2oil_A CATX-8, RAS-related pro 92.8 0.058 2E-06 48.4 3.2 22 270-291 27-48 (193)
464 3tw8_B RAS-related protein RAB 92.8 0.051 1.8E-06 47.8 2.9 22 269-290 10-31 (181)
465 2qtf_A Protein HFLX, GTP-bindi 92.8 0.48 1.7E-05 47.7 10.4 22 270-291 181-202 (364)
466 1m7b_A RND3/RHOE small GTP-bin 92.8 0.054 1.9E-06 48.3 3.0 23 269-291 8-30 (184)
467 4hlc_A DTMP kinase, thymidylat 92.8 0.19 6.6E-06 46.2 6.8 30 271-300 5-36 (205)
468 1nij_A Hypothetical protein YJ 92.8 0.11 3.6E-06 51.4 5.4 23 270-292 6-28 (318)
469 1dek_A Deoxynucleoside monopho 92.8 0.11 3.8E-06 49.2 5.2 27 270-296 3-29 (241)
470 2bov_A RAla, RAS-related prote 92.8 0.062 2.1E-06 48.6 3.3 23 269-291 15-37 (206)
471 2efe_B Small GTP-binding prote 92.7 0.062 2.1E-06 47.4 3.2 23 269-291 13-35 (181)
472 2bme_A RAB4A, RAS-related prot 92.7 0.058 2E-06 47.9 3.0 22 270-291 12-33 (186)
473 2npi_A Protein CLP1; CLP1-PCF1 92.7 0.097 3.3E-06 54.6 5.1 24 269-292 139-162 (460)
474 1m2o_B GTP-binding protein SAR 92.7 0.06 2.1E-06 48.5 3.1 23 269-291 24-46 (190)
475 3ch4_B Pmkase, phosphomevalona 92.7 0.076 2.6E-06 48.9 3.8 29 266-294 9-37 (202)
476 1tq4_A IIGP1, interferon-induc 92.6 0.092 3.2E-06 53.9 4.8 22 270-291 71-92 (413)
477 3clv_A RAB5 protein, putative; 92.6 0.063 2.1E-06 48.1 3.2 23 269-291 8-30 (208)
478 2g6b_A RAS-related protein RAB 92.6 0.066 2.3E-06 47.2 3.2 23 269-291 11-33 (180)
479 3nh6_A ATP-binding cassette SU 92.6 0.041 1.4E-06 54.2 2.0 26 267-292 79-104 (306)
480 1mh1_A RAC1; GTP-binding, GTPa 92.5 0.067 2.3E-06 47.3 3.2 22 270-291 7-28 (186)
481 2cxx_A Probable GTP-binding pr 92.5 0.057 2E-06 48.1 2.7 22 270-291 3-24 (190)
482 2obl_A ESCN; ATPase, hydrolase 92.4 0.094 3.2E-06 52.6 4.4 26 270-295 73-98 (347)
483 2gf9_A RAS-related protein RAB 92.4 0.071 2.4E-06 47.7 3.2 22 270-291 24-45 (189)
484 3tui_C Methionine import ATP-b 92.4 0.072 2.5E-06 53.7 3.5 24 269-292 55-78 (366)
485 3bwd_D RAC-like GTP-binding pr 92.4 0.073 2.5E-06 47.0 3.2 23 269-291 9-31 (182)
486 1tf7_A KAIC; homohexamer, hexa 92.4 0.12 4E-06 54.9 5.3 34 269-302 40-77 (525)
487 2xzl_A ATP-dependent helicase 92.4 0.064 2.2E-06 59.9 3.4 21 270-290 377-397 (802)
488 3fho_A ATP-dependent RNA helic 92.3 0.33 1.1E-05 51.1 8.8 18 269-286 159-176 (508)
489 3ihw_A Centg3; RAS, centaurin, 92.3 0.073 2.5E-06 47.7 3.2 22 270-291 22-43 (184)
490 2iwr_A Centaurin gamma 1; ANK 92.3 0.058 2E-06 47.6 2.5 23 269-291 8-30 (178)
491 3tkl_A RAS-related protein RAB 92.3 0.076 2.6E-06 47.6 3.2 23 269-291 17-39 (196)
492 3c5c_A RAS-like protein 12; GD 92.2 0.076 2.6E-06 47.6 3.2 22 270-291 23-44 (187)
493 2atv_A RERG, RAS-like estrogen 92.2 0.083 2.8E-06 47.6 3.4 23 269-291 29-51 (196)
494 2dpy_A FLII, flagellum-specifi 92.2 0.1 3.5E-06 54.1 4.4 26 270-295 159-184 (438)
495 1ko7_A HPR kinase/phosphatase; 92.2 0.08 2.7E-06 52.2 3.5 23 269-291 145-167 (314)
496 1x3s_A RAS-related protein RAB 92.1 0.08 2.7E-06 47.3 3.2 23 269-291 16-38 (195)
497 1vg8_A RAS-related protein RAB 92.1 0.079 2.7E-06 48.0 3.2 23 269-291 9-31 (207)
498 2fg5_A RAB-22B, RAS-related pr 92.1 0.073 2.5E-06 47.8 3.0 22 270-291 25-46 (192)
499 1pui_A ENGB, probable GTP-bind 92.1 0.043 1.5E-06 50.0 1.4 22 269-290 27-48 (210)
500 3t5g_A GTP-binding protein RHE 92.1 0.076 2.6E-06 46.9 3.0 23 269-291 7-29 (181)
No 1
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=6.6e-37 Score=313.85 Aligned_cols=240 Identities=23% Similarity=0.318 Sum_probs=202.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchh---h-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTK---A-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~~---~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+++++.|.+.+.. ..++. . +-.||+++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 141 ~~p~v~~~dIgGl~~~k~~l~e~v~~Pl~~pe~f~~~gi~~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~l~s 220 (405)
T 4b4t_J 141 KVPDSTYDMVGGLTKQIKEIKEVIELPVKHPELFESLGIAQPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAELVQ 220 (405)
T ss_dssp CSCSCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGGGSC
T ss_pred CCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHHhhc
Confidence 56788999999999999999886665 33332 2 4467899999999999999999999999999999999998866
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC--CHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|+... ||||||||+|.+++.+..... +.....+++.||..++ ....+++||+|||.|+.
T Consensus 221 k~vGese~~vr~lF~~Ar~~a-P~IIFiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~V~vIaATNrpd~ 299 (405)
T 4b4t_J 221 KYIGEGSRMVRELFVMAREHA-PSIIFMDEIDSIGSTRVEGSGGGDSEVQRTMLELLNQLDGFETSKNIKIIMATNRLDI 299 (405)
T ss_dssp SSTTHHHHHHHHHHHHHHHTC-SEEEEEESSSCCTTSCSCSSSGGGGHHHHHHHHHHHHHHTTTCCCCEEEEEEESCSSS
T ss_pred cccchHHHHHHHHHHHHHHhC-CceEeeecchhhccCCCCCCCCCcHHHHHHHHHHHHhhhccCCCCCeEEEeccCChhh
Confidence 77889999999999999876 899999999999988755432 3456778899999886 45668999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||+++| |||..|+|++|+.++|.+||+.++.+... .++.+++.||..|+|||
T Consensus 300 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~l-------------------------~~dvdl~~lA~~t~G~S 354 (405)
T 4b4t_J 300 LDPALLRPGRIDRKIEFPPPSVAARAEILRIHSRKMNL-------------------------TRGINLRKVAEKMNGCS 354 (405)
T ss_dssp SCHHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSBC-------------------------CSSCCHHHHHHHCCSCC
T ss_pred CCHhHcCCCcCceEEEcCCcCHHHHHHHHHHHhcCCCC-------------------------CccCCHHHHHHHCCCCC
Confidence 9999998 99999999999999999999988865421 12335899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
|+||..+|..+...+...+...||.+||..|++.....
T Consensus 355 GADi~~l~~eA~~~Air~~~~~vt~~Df~~Al~~v~~~ 392 (405)
T 4b4t_J 355 GADVKGVCTEAGMYALRERRIHVTQEDFELAVGKVMNK 392 (405)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhCc
Confidence 99999999655544444555789999999999887654
No 2
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.2e-37 Score=324.12 Aligned_cols=239 Identities=23% Similarity=0.363 Sum_probs=199.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchh----hcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTK----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~~----~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+++++.|...+.. ..++. .+-.||+++|||||||||||++|+++|.+++.+|+.++++++.+
T Consensus 174 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~f~~~g~~~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~l~s 253 (437)
T 4b4t_L 174 EQGEITFDGIGGLTEQIRELREVIELPLKNPEIFQRVGIKPPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASGIVD 253 (437)
T ss_dssp ESCSSCSGGGCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred cCCCCChhHhCChHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhhhcc
Confidence 56788999999999999999886665 33322 23467899999999999999999999999999999999998866
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|.... ||||||||+|.+++++...+ .+.....+++.||..++ ....+++||+|||.|+.
T Consensus 254 k~~Gese~~ir~~F~~A~~~~-P~IifiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~vivI~ATNrp~~ 332 (437)
T 4b4t_L 254 KYIGESARIIREMFAYAKEHE-PCIIFMDEVDAIGGRRFSEGTSADREIQRTLMELLTQMDGFDNLGQTKIIMATNRPDT 332 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHSC-SEEEEEECCCSSSCCCSSSCCSSTTHHHHHHHHHHHHHHSSSCTTSSEEEEEESSTTS
T ss_pred ccchHHHHHHHHHHHHHHhcC-CceeeeecccccccccccCCCCcchHHHHHHHHHHHHhhcccCCCCeEEEEecCCchh
Confidence 77888999999999999876 89999999999998875433 23456778889998885 34457999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||+++| |||..|+||+|+.++|..||+.++..... .++.++..||..|+|||
T Consensus 333 LDpAllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-------------------------~~d~dl~~lA~~t~G~s 387 (437)
T 4b4t_L 333 LDPALLRPGRLDRKVEIPLPNEAGRLEIFKIHTAKVKK-------------------------TGEFDFEAAVKMSDGFN 387 (437)
T ss_dssp SCTTTTSTTSEEEEECCCCCCHHHHHHHHHHHHHTSCB-------------------------CSCCCHHHHHHTCCSCC
T ss_pred hCHHHhCCCccceeeecCCcCHHHHHHHHHHHhcCCCC-------------------------CcccCHHHHHHhCCCCC
Confidence 9999998 69999999999999999999999876421 22335899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~ 496 (512)
|+||..+|..+...+...+...||.+||..|++....
T Consensus 388 GADi~~l~~eA~~~air~~~~~i~~~d~~~Al~~v~~ 424 (437)
T 4b4t_L 388 GADIRNCATEAGFFAIRDDRDHINPDDLMKAVRKVAE 424 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHHh
Confidence 9999999965544444445578999999999987654
No 3
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.5e-36 Score=308.36 Aligned_cols=240 Identities=20% Similarity=0.289 Sum_probs=201.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhc---hhh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TAN---TKA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~---~~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+++++.|.+.+.. ..+ ... +..|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 175 ~~p~v~~~DIgGld~~k~~L~e~v~~Pl~~pe~f~~~Gi~~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s~l~s 254 (437)
T 4b4t_I 175 KSPTESYSDIGGLESQIQEIKESVELPLTHPELYEEMGIKPPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGSELIQ 254 (437)
T ss_dssp SSCCCCGGGTCSCHHHHHHHHHHHHHHHHCCHHHHHHTCCCCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESGGGCC
T ss_pred cCCCCcceecCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHHHhhh
Confidence 56788999999999999999886665 332 222 3467799999999999999999999999999999999999876
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|.... ||||||||+|.+++.+.... .+.....+++.+|..++ ....+++||+|||.++.
T Consensus 255 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~LL~~lDg~~~~~~ViVIaATNrpd~ 333 (437)
T 4b4t_I 255 KYLGDGPRLCRQIFKVAGENA-PSIVFIDEIDAIGTKRYDSNSGGEREIQRTMLELLNQLDGFDDRGDVKVIMATNKIET 333 (437)
T ss_dssp SSSSHHHHHHHHHHHHHHHTC-SEEEEEEEESSSSCCCSCSSCSSCCHHHHHHHHHHHHHHHCCCSSSEEEEEEESCSTT
T ss_pred ccCchHHHHHHHHHHHHHhcC-CcEEEEehhhhhcccCCCCCCCccHHHHHHHHHHHHHhhCcCCCCCEEEEEeCCChhh
Confidence 77889999999999999876 89999999999998885433 23456778888988875 45568999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||+++| |||..|+|++|+.++|.+||+.++..... -++.+++.||..|+|||
T Consensus 334 LDpALlRpGRfD~~I~v~lPd~~~R~~Il~~~l~~~~l-------------------------~~dvdl~~LA~~T~GfS 388 (437)
T 4b4t_I 334 LDPALIRPGRIDRKILFENPDLSTKKKILGIHTSKMNL-------------------------SEDVNLETLVTTKDDLS 388 (437)
T ss_dssp CCTTSSCTTTEEEEECCCCCCHHHHHHHHHHHHTTSCB-------------------------CSCCCHHHHHHHCCSCC
T ss_pred cCHHHhcCCceeEEEEcCCcCHHHHHHHHHHHhcCCCC-------------------------CCcCCHHHHHHhCCCCC
Confidence 9999998 99999999999999999999998865321 12335899999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
|+||..+|..+...+.......||.+||..|++.....
T Consensus 389 GADI~~l~~eA~~~Air~~~~~It~eDf~~Al~rv~~~ 426 (437)
T 4b4t_I 389 GADIQAMCTEAGLLALRERRMQVTAEDFKQAKERVMKN 426 (437)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhCC
Confidence 99999999665555444555789999999999877654
No 4
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.6e-35 Score=307.08 Aligned_cols=243 Identities=23% Similarity=0.333 Sum_probs=201.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+++++.|.+.+.. ...+ .. +-.|++++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 202 e~P~vt~~DIgGl~~~k~~L~e~V~~pl~~pe~f~~~Gi~pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~L~s 281 (467)
T 4b4t_H 202 EKPDVTYSDVGGCKDQIEKLREVVELPLLSPERFATLGIDPPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSELVQ 281 (467)
T ss_dssp SSCSCCCSSCTTCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHhcCHHHHHHCCCCCCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHHhhc
Confidence 46788999999999999999876554 3332 22 3468899999999999999999999999999999999999866
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC--CHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM--SEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~--~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|.... ||||||||+|.++..+..... .......++.+|..++ ....+++||+|||+++.
T Consensus 282 k~vGesek~ir~lF~~Ar~~a-P~IIfiDEiDai~~~R~~~~~~~~~~~~~~l~~lL~~lDg~~~~~~ViVIaATNrpd~ 360 (467)
T 4b4t_H 282 KYVGEGARMVRELFEMARTKK-ACIIFFDEIDAVGGARFDDGAGGDNEVQRTMLELITQLDGFDPRGNIKVMFATNRPNT 360 (467)
T ss_dssp CSSSHHHHHHHHHHHHHHHTC-SEEEEEECCTTTSBCCSSSSCGGGGHHHHHHHHHHHHHHSSCCTTTEEEEEECSCTTS
T ss_pred ccCCHHHHHHHHHHHHHHhcC-CceEeecccccccccccCcCCCccHHHHHHHHHHHHHhhccCCCCcEEEEeCCCCccc
Confidence 77889999999999999876 899999999999988765432 3455677888888875 34567999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||+++| |||..|+|++|+.++|.+||+.++..... -.+.+++.||..|+|||
T Consensus 361 LDpALlRpGRFD~~I~i~lPd~~~R~~Ilk~~l~~~~l-------------------------~~dvdl~~LA~~T~GfS 415 (467)
T 4b4t_H 361 LDPALLRPGRIDRKVEFSLPDLEGRANIFRIHSKSMSV-------------------------ERGIRWELISRLCPNST 415 (467)
T ss_dssp BCHHHHSTTTCCEEECCCCCCHHHHHHHHHHHHTTSCB-------------------------CSSCCHHHHHHHCCSCC
T ss_pred CChhhhccccccEEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------CCCCCHHHHHHHCCCCC
Confidence 9999998 99999999999999999999998865421 12234889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQ 500 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~ 500 (512)
|+||..+|..+...+.......||.+||..|++..+.....
T Consensus 416 GADI~~l~~eAa~~Air~~~~~it~~Df~~Al~kV~~g~~k 456 (467)
T 4b4t_H 416 GAELRSVCTEAGMFAIRARRKVATEKDFLKAVDKVISGYKK 456 (467)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHHHHHHCC
T ss_pred HHHHHHHHHHHHHHHHHcCCCccCHHHHHHHHHHHhcCccc
Confidence 99999999655444333445789999999999988776543
No 5
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.8e-35 Score=307.53 Aligned_cols=238 Identities=23% Similarity=0.293 Sum_probs=197.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+++++.|.+.+.. ..++ .. +..||+++|||||||||||++|+++|.+++.+|+.++++++..
T Consensus 174 ~~p~~t~~digGl~~~k~~l~e~v~~pl~~pe~f~~~g~~~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~l~~ 253 (434)
T 4b4t_M 174 EKPTETYSDVGGLDKQIEELVEAIVLPMKRADKFKDMGIRAPKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQLVQ 253 (434)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHTHHHHHCSHHHHHHCCCCCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGGGCS
T ss_pred CCCCCChHhcCcHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhhhhh
Confidence 56788999999999999999775443 3332 22 3467899999999999999999999999999999999999876
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|.... ||||||||+|.+++.+.... .......+++.||..++. ...+++||+|||.|+.
T Consensus 254 ~~vGese~~ir~lF~~A~~~a-P~IifiDEiDal~~~R~~~~~~~~~~~~~~~~~lL~~ldg~~~~~~ViVIaaTNrp~~ 332 (434)
T 4b4t_M 254 MYIGEGAKLVRDAFALAKEKA-PTIIFIDELDAIGTKRFDSEKSGDREVQRTMLELLNQLDGFSSDDRVKVLAATNRVDV 332 (434)
T ss_dssp SCSSHHHHHHHHHHHHHHHHC-SEEEEEECTHHHHCCCSSGGGGTTHHHHHHHHHHHHHHTTSCSSCSSEEEEECSSCCC
T ss_pred cccchHHHHHHHHHHHHHhcC-CeEEeecchhhhhhccCCCCCCCchHHHHHHHHHHHHhhccCCCCCEEEEEeCCCchh
Confidence 77889999999999999877 89999999999998875433 234567788999998863 3457999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||++++ |||..|+|++|+.++|.+||+.++.+... -++.+++.||..|+|||
T Consensus 333 LD~AllRpGRfD~~I~i~lPd~~~R~~Il~~~~~~~~~-------------------------~~dvdl~~lA~~t~G~s 387 (434)
T 4b4t_M 333 LDPALLRSGRLDRKIEFPLPSEDSRAQILQIHSRKMTT-------------------------DDDINWQELARSTDEFN 387 (434)
T ss_dssp CCTTTCSTTSEEEEEECCCCCHHHHHHHHHHHHHHSCB-------------------------CSCCCHHHHHHHCSSCC
T ss_pred cCHhHhcCCceeEEEEeCCcCHHHHHHHHHHHhcCCCC-------------------------CCcCCHHHHHHhCCCCC
Confidence 9999988 99999999999999999999999876421 12234889999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
|+||..+|..+...+...+...|+.+||.+|++...
T Consensus 388 GADi~~l~~eA~~~a~r~~~~~i~~~Df~~Al~~v~ 423 (434)
T 4b4t_M 388 GAQLKAVTVEAGMIALRNGQSSVKHEDFVEGISEVQ 423 (434)
T ss_dssp HHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHSCS
T ss_pred HHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHh
Confidence 999999996554444334457899999999997643
No 6
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-34 Score=301.51 Aligned_cols=238 Identities=25% Similarity=0.356 Sum_probs=198.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++|.|.+++++.|...+.. ..++ .. +-.|++++|||||||||||++|+++|++++.+|+.++++++..
T Consensus 165 ~~p~v~~~digGl~~~k~~l~e~v~~pl~~p~~~~~~g~~~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~~l~~ 244 (428)
T 4b4t_K 165 EKPDVTYADVGGLDMQKQEIREAVELPLVQADLYEQIGIDPPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGSEFVH 244 (428)
T ss_dssp SSCSCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGGGTCC
T ss_pred CCCCCCHHHhccHHHHHHHHHHHHHHHHhCHHHHHhCCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecchhhc
Confidence 56778999999999999999876654 3332 22 4467899999999999999999999999999999999998765
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+++...++.+|..|.... ||||||||+|.+++.+.... .+.....+++.||..++ ....+++||+|||.++.
T Consensus 245 ~~~Ge~e~~ir~lF~~A~~~a-P~IifiDEiD~i~~~R~~~~~~~~~~~~r~l~~lL~~ldg~~~~~~v~vI~aTN~~~~ 323 (428)
T 4b4t_K 245 KYLGEGPRMVRDVFRLARENA-PSIIFIDEVDSIATKRFDAQTGSDREVQRILIELLTQMDGFDQSTNVKVIMATNRADT 323 (428)
T ss_dssp SSCSHHHHHHHHHHHHHHHTC-SEEEEEECTHHHHCSCSSSCSCCCCHHHHHHHHHHHHHHHSCSSCSEEEEEEESCSSS
T ss_pred cccchhHHHHHHHHHHHHHcC-CCeeechhhhhhhccccCCCCCCChHHHHHHHHHHHHhhCCCCCCCEEEEEecCChhh
Confidence 77889999999999999876 89999999999998875432 23456778888988886 45568999999999999
Q ss_pred CCHHHHc--cccceeecC-CCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCC
Q 010366 382 LDSAVAD--RIDEVLEFP-LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 458 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~-~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 458 (512)
+||+++| |||..|+|| +|+.++|..||+.++..... .++.+++.||..|+||
T Consensus 324 LD~AllRpGRfd~~I~~p~lPd~~~R~~Il~~~~~~~~l-------------------------~~~~dl~~lA~~t~G~ 378 (428)
T 4b4t_K 324 LDPALLRPGRLDRKIEFPSLRDRRERRLIFGTIASKMSL-------------------------APEADLDSLIIRNDSL 378 (428)
T ss_dssp CCHHHHSSSSEEEEEECCSSCCHHHHHHHHHHHHHSSCB-------------------------CTTCCHHHHHHHTTTC
T ss_pred cChhhhcCCcceEEEEcCCCCCHHHHHHHHHHHhcCCCC-------------------------CcccCHHHHHHHCCCC
Confidence 9999998 999999996 89999999999998865421 2233589999999999
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 459 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 459 s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
||+||..+|..+...+...+...|+.+||.+|+...+
T Consensus 379 sgadi~~l~~eA~~~a~r~~~~~i~~~d~~~A~~~~~ 415 (428)
T 4b4t_K 379 SGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 415 (428)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHS
T ss_pred CHHHHHHHHHHHHHHHHHCCCCCCCHHHHHHHHHHhh
Confidence 9999999996554444445557899999999997643
No 7
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=99.97 E-value=1.4e-29 Score=256.32 Aligned_cols=213 Identities=26% Similarity=0.428 Sum_probs=175.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hchh---hcCCCCcceEEecCCCCchHHHHHHHHHHh-CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANTK---AHNAPFRNMLFYGPPGTGKTMAARELARKS-GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~~---~~~~p~~~vLL~GppGtGKT~lA~alA~~l-~~~~~~v~~~~~~~ 306 (512)
..|..+|++|+|.+++++.+...+... ..+. ....|++++|||||||||||++|+++|+.+ +.+++.++++++..
T Consensus 5 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~~~l~~ 84 (322)
T 1xwi_A 5 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 84 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCGGGSCTTCCCCSEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEECCSSCC
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHHhCHHHHhCCCCCCceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEhHHHHh
Confidence 356677999999999999998766432 2221 123567899999999999999999999999 88999999988765
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC---CCCCEEEEEeeCCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---QSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~viiI~ttN~~~~l 382 (512)
+.+.+...+..+|..+.... |+||||||+|.+.+.+.... ......+++.++..++. ...+++||+|||.++.+
T Consensus 85 ~~~g~~~~~~~~lf~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~ld~~~~~~~~v~vI~atn~~~~l 162 (322)
T 1xwi_A 85 KWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 162 (322)
T ss_dssp SSCCSCHHHHHHHHHHHHHTS-SEEEEEETTTGGGCCSSSCC-TTHHHHHHHHHHHHHHCSSSCCTTEEEEEEESCTTTS
T ss_pred hhhhHHHHHHHHHHHHHHhcC-CcEEEeecHHHhcccccccc-chHHHHHHHHHHHHHhcccccCCCEEEEEecCCcccC
Confidence 45667788899999888655 89999999999988766543 34556677778777653 45789999999999999
Q ss_pred CHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 383 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 383 ~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++++++||+..+++++|+.++|..|++.++..... .+++.++..|+..+.||||+|
T Consensus 163 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~------------------------~l~~~~l~~la~~t~G~sgad 218 (322)
T 1xwi_A 163 DSAIRRRFEKRIYIPLPEPHARAAMFKLHLGTTQN------------------------SLTEADFRELGRKTDGYSGAD 218 (322)
T ss_dssp CHHHHHTCCEEEECCCCCHHHHHHHHHHHHTTCCB------------------------CCCHHHHHHHHHTCTTCCHHH
T ss_pred CHHHHhhcCeEEEeCCcCHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999998865321 267889999999999999999
Q ss_pred HHHHHHHH
Q 010366 463 IAKLMASV 470 (512)
Q Consensus 463 I~~lv~~~ 470 (512)
|..+|..+
T Consensus 219 l~~l~~~A 226 (322)
T 1xwi_A 219 ISIIVRDA 226 (322)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999543
No 8
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=99.97 E-value=4e-30 Score=260.31 Aligned_cols=213 Identities=27% Similarity=0.419 Sum_probs=170.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhc-h---hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATAN-T---KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~-~---~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..+...|++|+|.+.+++.+...+..... + .....|++++|||||||||||++|+++|+.++.+++.++++++..
T Consensus 11 ~~~~~~~~di~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 90 (322)
T 3eie_A 11 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 90 (322)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHTHHHHHCGGGCCTTCCCCCEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEHHHHHTT
T ss_pred cCCCCCHHHhcChHHHHHHHHHHHHHHHhCHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHHCCCEEEEchHHHhhc
Confidence 56777899999999999999876643322 1 234467789999999999999999999999999999999988643
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC---CCCCCEEEEEeeCCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---DQSKDIVLALATNRPGDLD 383 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~---~~~~~viiI~ttN~~~~l~ 383 (512)
+.+.....+..+|..+.... |+||||||+|.+.+.+.... ......+.+.++..++ ....+++||+|||.++.++
T Consensus 91 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vi~atn~~~~ld 168 (322)
T 3eie_A 91 WMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 168 (322)
T ss_dssp TGGGHHHHHHHHHHHHHHTS-SEEEEEECGGGGSCC-------CCTHHHHHHHHHHHGGGGTSCCCEEEEEEESCGGGSC
T ss_pred ccchHHHHHHHHHHHHHhcC-CeEEEechhhhhhccCCCCc-chHHHHHHHHHHHHhccccccCCceEEEEecCChhhCC
Confidence 66777888999999998765 79999999999987664322 1122344455555443 4567899999999999999
Q ss_pred HHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHH
Q 010366 384 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 463 (512)
Q Consensus 384 ~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI 463 (512)
+++++||+..+++++|+.++|..|++.++..... .+++..+..|+..+.||+|+||
T Consensus 169 ~al~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~------------------------~~~~~~l~~la~~t~g~sg~di 224 (322)
T 3eie_A 169 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPC------------------------VLTKEDYRTLGAMTEGYSGSDI 224 (322)
T ss_dssp HHHHHHCCEEEECCCCCHHHHHHHHHHHHTTCCC------------------------CCCHHHHHHHHHTTTTCCHHHH
T ss_pred HHHHcccCeEEEeCCCCHHHHHHHHHHHhccCCC------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999998865321 2688899999999999999999
Q ss_pred HHHHHHH
Q 010366 464 AKLMASV 470 (512)
Q Consensus 464 ~~lv~~~ 470 (512)
..+|..+
T Consensus 225 ~~l~~~a 231 (322)
T 3eie_A 225 AVVVKDA 231 (322)
T ss_dssp HHHHHHH
T ss_pred HHHHHHH
Confidence 9999544
No 9
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=99.97 E-value=3.5e-29 Score=244.95 Aligned_cols=245 Identities=23% Similarity=0.351 Sum_probs=180.4
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cch
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGP 309 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~ 309 (512)
..+|++++|.+.+++.+..++.....+.. +..+++++||+||||||||++|+++|..++.+++.++++++.. +.+
T Consensus 2 ~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~ 81 (262)
T 2qz4_A 2 GVSFKDVAGMHEAKLEVREFVDYLKSPERFLQLGAKVPKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGAEFVEVIGG 81 (262)
T ss_dssp CCCTTSSCSCHHHHHHHHHHHHHHHCCC------CCCCCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETTTTSSSSTT
T ss_pred CCCHHHhCCHHHHHHHHHHHHHHHHCHHHHHHcCCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEechHHHHhhccC
Confidence 34689999999999999888776554332 1245678999999999999999999999999999999998765 556
Q ss_pred hHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC---CCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCCCH
Q 010366 310 QAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY---MSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLDS 384 (512)
Q Consensus 310 ~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~---~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l~~ 384 (512)
.+...+..+|..+.... ++||||||+|.+...+.... ........++.++..++. ...+++||+|||.++.+++
T Consensus 82 ~~~~~~~~~~~~a~~~~-~~vl~iDeid~l~~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vi~~tn~~~~ld~ 160 (262)
T 2qz4_A 82 LGAARVRSLFKEARARA-PCIVYIDEIDAVGKKRSTTMSGFSNTEEEQTLNQLLVEMDGMGTTDHVIVLASTNRADILDG 160 (262)
T ss_dssp HHHHHHHHHHHHHHHTC-SEEEEEECC-------------------CHHHHHHHHHHHTCCTTCCEEEEEEESCGGGGGS
T ss_pred hhHHHHHHHHHHHHhcC-CeEEEEeCcchhhccccccccCccchhHHHHHHHHHHHhhCcCCCCCEEEEecCCChhhcCH
Confidence 66778888999888654 79999999999977654321 122344567777776643 3457999999999999999
Q ss_pred HHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCH-HHHHHHHHHcCCCcHH
Q 010366 385 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD-DILMEAAAKTEGFSGR 461 (512)
Q Consensus 385 al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~la~~t~g~s~~ 461 (512)
++++ ||+..++|++|+.++|..|++.++...... .++ ..+..++..+.||+++
T Consensus 161 ~l~~~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~~------------------------~~~~~~~~~l~~~~~g~~~~ 216 (262)
T 2qz4_A 161 ALMRPGRLDRHVFIDLPTLQERREIFEQHLKSLKLT------------------------QSSTFYSQRLAELTPGFSGA 216 (262)
T ss_dssp GGGSTTSCCEEEECCSCCHHHHHHHHHHHHHHTTCC------------------------BTHHHHHHHHHHTCTTCCHH
T ss_pred HHhcCCcCCeEEEeCCcCHHHHHHHHHHHHHhCCCC------------------------cchhhHHHHHHHHCCCCCHH
Confidence 9999 999999999999999999999998764321 222 3468899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEHQQRRKL 504 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~~~~~~~ 504 (512)
+|..++..+...+...+...|+.++|..|++........+.+.
T Consensus 217 ~l~~l~~~a~~~a~~~~~~~i~~~d~~~a~~~~~~~~~~~~~~ 259 (262)
T 2qz4_A 217 DIANICNEAALHAAREGHTSVHTLNFEYAVERVLAGTAKKSKI 259 (262)
T ss_dssp HHHHHHHHHHTC--------CCBCCHHHHHHHHHHHHHCC---
T ss_pred HHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHhccChhhhhHh
Confidence 9999997666555555567899999999999988776665544
No 10
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=99.96 E-value=3.5e-29 Score=256.67 Aligned_cols=215 Identities=27% Similarity=0.406 Sum_probs=165.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~---~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..+..+|++|+|.+.+++.+...+... ..+ .....|++++|||||||||||++|+++|..++.+++.++++++..
T Consensus 44 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~~~l~~~ 123 (355)
T 2qp9_X 44 EKPNVKWEDVAGLEGAKEALKEAVILPVKFPHLFKGNRKPTSGILLYGPPGTGKSYLAKAVATEANSTFFSVSSSDLVSK 123 (355)
T ss_dssp ---CCCGGGSCCGGGHHHHHHHHTHHHHHCGGGGCSSCCCCCCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEHHHHHSC
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHHhCHHHHhcCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeHHHHhhh
Confidence 456778999999999999998765433 211 223466789999999999999999999999999999999877643
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC---CCCCCEEEEEeeCCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG---DQSKDIVLALATNRPGDLD 383 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~---~~~~~viiI~ttN~~~~l~ 383 (512)
+.+.....+..+|..+.... ++||||||+|.+.+.+.... ......+.+.++..++ ....+++||+|||.++.++
T Consensus 124 ~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~r~~~~-~~~~~~~~~~ll~~l~~~~~~~~~v~vI~atn~~~~ld 201 (355)
T 2qp9_X 124 WMGESEKLVKQLFAMARENK-PSIIFIDQVDALTGTRGEGE-SEASRRIKTELLVQMNGVGNDSQGVLVLGATNIPWQLD 201 (355)
T ss_dssp C---CHHHHHHHHHHHHHTS-SEEEEEECGGGGTC-------CTHHHHHHHHHHHHHHHCC---CCEEEEEEESCGGGSC
T ss_pred hcchHHHHHHHHHHHHHHcC-CeEEEEechHhhcccCCCCc-chHHHHHHHHHHHHhhcccccCCCeEEEeecCCcccCC
Confidence 44566778888998887655 89999999999987664432 2344555566665553 3456899999999999999
Q ss_pred HHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHH
Q 010366 384 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 463 (512)
Q Consensus 384 ~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI 463 (512)
+++++||+..+++++|+.++|..|++.++..... .+++.++..|+..+.||+|+||
T Consensus 202 ~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~------------------------~~~~~~l~~la~~t~G~sg~dl 257 (355)
T 2qp9_X 202 SAIRRRFERRIYIPLPDLAARTTMFEINVGDTPS------------------------VLTKEDYRTLGAMTEGYSGSDI 257 (355)
T ss_dssp HHHHHTCCEEEECCCCCHHHHHHHHHHHHTTSCB------------------------CCCHHHHHHHHHHTTTCCHHHH
T ss_pred HHHHcccCEEEEeCCcCHHHHHHHHHHHHhhCCC------------------------CCCHHHHHHHHHHcCCCCHHHH
Confidence 9999999999999999999999999998865321 2678899999999999999999
Q ss_pred HHHHHHHHH
Q 010366 464 AKLMASVQA 472 (512)
Q Consensus 464 ~~lv~~~~a 472 (512)
..+|..+..
T Consensus 258 ~~l~~~A~~ 266 (355)
T 2qp9_X 258 AVVVKDALM 266 (355)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 999954443
No 11
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=3.5e-31 Score=293.56 Aligned_cols=241 Identities=24% Similarity=0.371 Sum_probs=158.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhh-ch----hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATA-NT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~-~~----~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|...|+++.|.+++++.+.+.+.... .+ ..+..|++++|||||||||||++|+++|.+++.+|+.++++++.+
T Consensus 470 ~~p~v~w~diggl~~~k~~l~e~v~~p~~~p~~f~~~g~~~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~~~~l~s 549 (806)
T 3cf2_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp BCCCCCSTTCCSCHHHHHHHTTTTTTTTTCSGGGSSSCCCCCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECCHHHHHT
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHhhhhCHHHHHhcCCCCCceEEEecCCCCCchHHHHHHHHHhCCceEEeccchhhc
Confidence 3566779999999999999977654432 21 123367789999999999999999999999999999999888654
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.++++..++.+|..|+... ||||||||+|.+++.|+.. ..+.....+++.||..++ ....+|+||+|||.|+.
T Consensus 550 ~~vGese~~vr~lF~~Ar~~~-P~IifiDEiDsl~~~R~~~~~~~~~~~~rv~~~lL~~mdg~~~~~~V~vi~aTN~p~~ 628 (806)
T 3cf2_A 550 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp TTCSSCHHHHHHHHHHHHTTC-SEEEECSCGGGCC--------------CHHHHHHHHHHHSSCSSSSEEEECC-CCSSS
T ss_pred cccchHHHHHHHHHHHHHHcC-CceeechhhhHHhhccCCCCCCCchHHHHHHHHHHHHHhCCCCCCCEEEEEeCCCchh
Confidence 77888999999999998766 8999999999999988643 223456678999999886 34567999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+||+++| ||+..|+|++|+.++|.+||+.++.+... .++.+++.||..|+|||
T Consensus 629 lD~AllRpgRfd~~i~v~lPd~~~R~~il~~~l~~~~~-------------------------~~~~dl~~la~~t~g~S 683 (806)
T 3cf2_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------------------AKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp SCHHHHSTTTSCCEEEC-----CHHHHTTTTTSSCC---------------------------CCC--------------
T ss_pred CCHhHcCCCcceEEEEECCcCHHHHHHHHHHHhcCCCC-------------------------CCCCCHHHHHHhCCCCC
Confidence 9999999 99999999999999999999988755321 23456899999999999
Q ss_pred HHHHHHHHHHHHHHHhC-------------------------CCCCccCHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYG-------------------------SENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~-------------------------~~~~~it~e~~~~al~~~~~~~ 498 (512)
|+||..+|..+...+.. .....|+.+||.+|+....+.-
T Consensus 684 Gadi~~l~~~A~~~a~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~pSv 747 (806)
T 3cf2_A 684 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFARRSV 747 (806)
T ss_dssp --CHHHHHHHHHHHHHHHHHC-----------------------CCC----CCTTTC-------
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhhccCccccccccccccCccCHHHHHHHHHhCCCCC
Confidence 99999999544322210 0013589999999998877653
No 12
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=99.96 E-value=5.2e-28 Score=236.65 Aligned_cols=238 Identities=25% Similarity=0.348 Sum_probs=187.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..++..|++++|.+.+++.+..++.....+.. +..++++++|+||||||||++|+++|..++.+++.++++++..
T Consensus 5 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~i~~~~~~~~ 84 (257)
T 1lv7_A 5 DQIKTTFADVAGCDEAKEEVAELVEYLREPSRFQKLGGKIPKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISGSDFVEM 84 (257)
T ss_dssp CSSCCCGGGSCSCHHHHHHTHHHHHHHHCGGGC-----CCCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEECSCSSTTS
T ss_pred cCCCCCHHHhcCcHHHHHHHHHHHHHHhCHHHHHHcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCCEEEEeHHHHHHH
Confidence 35667899999999999999887776554322 2245678999999999999999999999999999999988765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l 382 (512)
+.+.....+..+|..+.... |+++||||+|.+...+... .........++.++..++. ...+++||+|||.++.+
T Consensus 85 ~~~~~~~~~~~~~~~a~~~~-~~il~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~~vI~~tn~~~~l 163 (257)
T 1lv7_A 85 FVGVGASRVRDMFEQAKKAA-PCIIFIDEIDAVGRQRGAGLGGGHDEREQTLNQMLVEMDGFEGNEGIIVIAATNRPDVL 163 (257)
T ss_dssp CCCCCHHHHHHHHHHHHTTC-SEEEEETTHHHHTCCCSTTSCCTTCHHHHHHHHHHHHHHTCCSSSCEEEEEEESCTTTS
T ss_pred hhhhhHHHHHHHHHHHHHcC-CeeehhhhhhhhccCCCCCcCCCchHHHHHHHHHHHHhhCcccCCCEEEEEeeCCchhC
Confidence 33455667888898887544 7899999999998765432 1122344667777777652 35679999999999999
Q ss_pred CHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH
Q 010366 383 DSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 460 (512)
Q Consensus 383 ~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~ 460 (512)
++++++ ||+..+.|++|+.++|.+|++.++..... .++..+..++..+.||++
T Consensus 164 ~~~l~r~~rf~~~i~i~~P~~~~r~~il~~~~~~~~l-------------------------~~~~~~~~la~~~~G~~~ 218 (257)
T 1lv7_A 164 DPALLRPGRFDRQVVVGLPDVRGREQILKVHMRRVPL-------------------------APDIDAAIIARGTPGFSG 218 (257)
T ss_dssp CGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHTCTTCCH
T ss_pred CHHHcCCCcCCeEEEeCCCCHHHHHHHHHHHHhcCCC-------------------------CccccHHHHHHHcCCCCH
Confidence 999998 99999999999999999999888754211 122336778999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
+||..+|..+...+...+...||.++|.+|++...
T Consensus 219 ~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~ 253 (257)
T 1lv7_A 219 ADLANLVNEAALFAARGNKRVVSMVEFEKAKDKIM 253 (257)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhCCCcccHHHHHHHHHHHh
Confidence 99999997766666555567999999999998764
No 13
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=99.96 E-value=1.2e-29 Score=281.18 Aligned_cols=236 Identities=27% Similarity=0.421 Sum_probs=189.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHH-hhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGA-TANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..+..+|++|.|.++.++.|++++.. ...+.. +..||+++|||||||||||++|+++|++++.+++.++++++.+
T Consensus 197 ~~~~v~~~dIgGl~~~~~~l~e~v~~pl~~p~~f~~~g~~~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~~~l~s 276 (806)
T 3cf2_A 197 SLNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMS 276 (806)
T ss_dssp CSSSCCGGGCCSCCTTHHHHHHHHHHHHHCCGGGTSCCCCCCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEHHHHHS
T ss_pred cCCCCChhhhcCHHHHHHHHHHHHHHHccCHHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEhHHhhc
Confidence 34667899999999999999887764 333322 2368899999999999999999999999999999999988754
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 383 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~ 383 (512)
+.+++...++.+|..|.... ||||||||+|.|++++.... +...+.+++.|+..++ ....+++||+|||.++.+|
T Consensus 277 k~~gese~~lr~lF~~A~~~~-PsIIfIDEiDal~~~r~~~~-~~~~~riv~~LL~~mdg~~~~~~V~VIaaTN~~d~LD 354 (806)
T 3cf2_A 277 KLAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSID 354 (806)
T ss_dssp SCTTHHHHHHHHHHHHHTTSC-SEEEEEESGGGTCCTTTTCC-CTTHHHHHHHHHTHHHHCCGGGCEEEEEECSSTTTSC
T ss_pred ccchHHHHHHHHHHHHHHHcC-CeEEEEehhcccccccCCCC-ChHHHHHHHHHHHHHhcccccCCEEEEEecCChhhcC
Confidence 77888999999999998766 89999999999998876544 3345667777777664 2345799999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++ ||+..|+|+.|+.++|.+||+.++..... .++.++..||..|.||+|+
T Consensus 355 ~ALrR~GRFd~~I~i~~Pd~~~R~~IL~~~l~~~~~-------------------------~~dvdl~~lA~~T~Gfsga 409 (806)
T 3cf2_A 355 PALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------------------ADDVDLEQVANETHGHVGA 409 (806)
T ss_dssp TTTTSTTSSCEEEECCCCCHHHHHHHHHHTCSSSEE-------------------------CTTCCHHHHHHHCCSCCHH
T ss_pred HHHhCCcccceEEecCCCCHHHHHHHHHHHhcCCCC-------------------------CcccCHHHHHHhcCCCCHH
Confidence 99999 99999999999999999999988755321 2344589999999999999
Q ss_pred HHHHHHHHHHHHHhC--------C---------CCCccCHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYG--------S---------ENCVLDPSLFREVVDYK 494 (512)
Q Consensus 462 dI~~lv~~~~aa~~~--------~---------~~~~it~e~~~~al~~~ 494 (512)
||..+|..+...+.. . ....++.+||..|+...
T Consensus 410 DL~~Lv~eA~~~A~~r~~~~i~~~~~~~~~e~~~~~~v~~~Df~~Al~~~ 459 (806)
T 3cf2_A 410 DLAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQS 459 (806)
T ss_dssp HHHHHHHHHHHHHHHHHHHHGGGTCCCCSHHHHHHCEECTTHHHHHHSSS
T ss_pred HHHHHHHHHHHHHHHhccccccccccccchhhhccceeeHHHHHHHHHhC
Confidence 999999544322211 0 01357888888887654
No 14
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=99.96 E-value=2.6e-28 Score=257.57 Aligned_cols=239 Identities=25% Similarity=0.330 Sum_probs=188.0
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-C
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 307 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~ 307 (512)
.+..+|++|+|.++++..+.+++.....+.. +..+++++||+||||||||++|+++|..++.+|+.++++++.. +
T Consensus 10 ~~~~~f~di~G~~~~~~~l~e~v~~l~~~~~~~~~g~~~p~gvLL~GppGtGKT~Laraia~~~~~~f~~is~~~~~~~~ 89 (476)
T 2ce7_A 10 NKRVTFKDVGGAEEAIEELKEVVEFLKDPSKFNRIGARMPKGILLVGPPGTGKTLLARAVAGEANVPFFHISGSDFVELF 89 (476)
T ss_dssp SCCCCGGGCCSCHHHHHHHHHHHHHHHCTHHHHTTTCCCCSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGTTTCC
T ss_pred CCCCCHHHhCCcHHHHHHHHHHHHHhhChHHHhhcCCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCCHHHHHHHH
Confidence 3456799999999999999988876654321 2346678999999999999999999999999999999988865 4
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCC
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLD 383 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~ 383 (512)
.+.+...++.+|..+.... |+||||||+|.+...+... +........++.++..++ ....+++||+|||.++.++
T Consensus 90 ~g~~~~~~r~lf~~A~~~~-p~ILfIDEid~l~~~r~~~~~g~~~~~~~~l~~LL~~ld~~~~~~~viVIaaTn~~~~Ld 168 (476)
T 2ce7_A 90 VGVGAARVRDLFAQAKAHA-PCIVFIDEIDAVGRHRGAGLGGGHDEREQTLNQLLVEMDGFDSKEGIIVMAATNRPDILD 168 (476)
T ss_dssp TTHHHHHHHHHHHHHHHTC-SEEEEEETGGGTCCC---------CHHHHHHHHHHHHHHHSCGGGTEEEEEEESCGGGSC
T ss_pred hcccHHHHHHHHHHHHhcC-CCEEEEechhhhhhhcccccCcCcHHHHHHHHHHHHHHhccCCCCCEEEEEecCChhhhc
Confidence 5556778889999998755 8999999999998766432 112344567788887764 2345799999999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++ ||+..+.|++|+.++|.+|++.++..... .++.++..++..+.||+|+
T Consensus 169 ~allR~gRFd~~i~i~~Pd~~~R~~Il~~~~~~~~l-------------------------~~~v~l~~la~~t~G~sga 223 (476)
T 2ce7_A 169 PALLRPGRFDKKIVVDPPDMLGRKKILEIHTRNKPL-------------------------AEDVNLEIIAKRTPGFVGA 223 (476)
T ss_dssp GGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHTCTTCCHH
T ss_pred hhhcccCcceeEeecCCCCHHHHHHHHHHHHHhCCC-------------------------cchhhHHHHHHhcCCCcHH
Confidence 99997 99999999999999999999887754311 1222377799999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
||.++|+.+...+...+...|+.++|..|++.....
T Consensus 224 dL~~lv~~Aal~A~~~~~~~I~~~dl~~al~~v~~~ 259 (476)
T 2ce7_A 224 DLENLVNEAALLAAREGRDKITMKDFEEAIDRVIAG 259 (476)
T ss_dssp HHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHC--
T ss_pred HHHHHHHHHHHHHHHcCCCeecHHHHHHHHHHHhcC
Confidence 999999766554444455789999999999887654
No 15
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=99.96 E-value=8.1e-28 Score=238.57 Aligned_cols=241 Identities=25% Similarity=0.389 Sum_probs=193.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..+...|++++|.+.+++.+...+... ... .. +..++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 10 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~ 89 (285)
T 3h4m_A 10 ERPNVRYEDIGGLEKQMQEIREVVELPLKHPELFEKVGIEPPKGILLYGPPGTGKTLLAKAVATETNATFIRVVGSELVK 89 (285)
T ss_dssp SSCCCCGGGSCSCHHHHHHHHHHTHHHHHCHHHHHHHCCCCCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEGGGGCC
T ss_pred CCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehHHHHH
Confidence 355667999999999999998766442 211 11 2245678999999999999999999999999999999988755
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+.....+..+|..+.... |+||||||+|.+.+++.... ........+..++..++ ....+++||+|||.++.
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~~~~~vI~ttn~~~~ 168 (285)
T 3h4m_A 90 KFIGEGASLVKDIFKLAKEKA-PSIIFIDEIDAIAAKRTDALTGGDREVQRTLMQLLAEMDGFDARGDVKIIGATNRPDI 168 (285)
T ss_dssp CSTTHHHHHHHHHHHHHHHTC-SEEEEEETTHHHHBCCSSSCCGGGGHHHHHHHHHHHHHHTTCSSSSEEEEEECSCGGG
T ss_pred hccchHHHHHHHHHHHHHHcC-CeEEEEECHHHhcccCccccCCccHHHHHHHHHHHHHhhCCCCCCCEEEEEeCCCchh
Confidence 55667778888998888765 79999999999987665432 13355677778887764 34567999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+++++++ ||+..+.|++|+.+++.+|++.++..... ..+..+..++..+.|++
T Consensus 169 l~~~l~~~~Rf~~~i~~~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~l~~~~~g~~ 223 (285)
T 3h4m_A 169 LDPAILRPGRFDRIIEVPAPDEKGRLEILKIHTRKMNL-------------------------AEDVNLEEIAKMTEGCV 223 (285)
T ss_dssp BCHHHHSTTSEEEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHHCTTCC
T ss_pred cCHHHcCCCcCCeEEEECCCCHHHHHHHHHHHHhcCCC-------------------------CCcCCHHHHHHHcCCCC
Confidence 9999999 99999999999999999999988755321 12334788999999999
Q ss_pred HHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
+++|..+|..+...+.......||.+++.+|++......
T Consensus 224 ~~~i~~l~~~a~~~a~~~~~~~I~~~d~~~al~~~~~~~ 262 (285)
T 3h4m_A 224 GAELKAICTEAGMNAIRELRDYVTMDDFRKAVEKIMEKK 262 (285)
T ss_dssp HHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhccCcCCHHHHHHHHHHHHhcc
Confidence 999999998777777666668899999999999887654
No 16
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=99.96 E-value=3.3e-28 Score=256.64 Aligned_cols=213 Identities=26% Similarity=0.428 Sum_probs=168.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch---hhcCCCCcceEEecCCCCchHHHHHHHHHHh-CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KAHNAPFRNMLFYGPPGTGKTMAARELARKS-GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~---~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-~~~~~~v~~~~~~~ 306 (512)
..+...|++|+|.+.++..+...+... ..+ .....|++++||+||||||||++|+++|..+ +.+|+.++++++..
T Consensus 127 ~~~~~~~~di~G~~~~k~~l~~~v~~p~~~~~~~~~~~~~~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~~~~l~~ 206 (444)
T 2zan_A 127 ERPNVKWSDVAGLEGAKEALKEAVILPIKFPHLFTGKRTPWRGILLFGPPGTGKSYLAKAVATEANNSTFFSISSSDLVS 206 (444)
T ss_dssp CCCCCCGGGSCSCHHHHHHHHHHHTHHHHCTTTTSGGGCCCSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEECCC----
T ss_pred cCCCCCHHHhcCHHHHHHHHHHHHHHHhhCHHHhhccCCCCceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEeHHHHHh
Confidence 456677999999999999997765332 111 1123567899999999999999999999999 88999999988754
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC---CCCCEEEEEeeCCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---QSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---~~~~viiI~ttN~~~~l 382 (512)
+.+.+...+..+|..+.... |+||||||+|.+++.+.... ......+++.++..++. ...+++||+|||.++.+
T Consensus 207 ~~~g~~~~~~~~~f~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~v~vI~atn~~~~l 284 (444)
T 2zan_A 207 KWLGESEKLVKNLFQLARENK-PSIIFIDEIDSLCGSRSENE-SEAARRIKTEFLVQMQGVGVDNDGILVLGATNIPWVL 284 (444)
T ss_dssp -----CCCTHHHHHHHHHHSC-SEEEEESCTTTTCCCSSCCC-CGGGHHHHHHHHTTTTCSSCCCSSCEEEEEESCGGGS
T ss_pred hhcchHHHHHHHHHHHHHHcC-CeEEEEechHhhccCCCCcc-ccHHHHHHHHHHHHHhCcccCCCCEEEEecCCCcccc
Confidence 34444556788888887655 89999999999987765443 34456778888887764 45689999999999999
Q ss_pred CHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 383 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 383 ~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++++++||+..+++++|+.++|..|++.++..... .+++.++..|+..+.||||+|
T Consensus 285 d~al~rRf~~~i~i~~P~~~~r~~il~~~l~~~~~------------------------~l~~~~l~~la~~t~G~sgad 340 (444)
T 2zan_A 285 DSAIRRRFEKRIYIPLPEAHARAAMFRLHLGSTQN------------------------SLTEADFQELGRKTDGYSGAD 340 (444)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCE------------------------ECCHHHHHHHHHHTTTCCHHH
T ss_pred CHHHHhhcceEEEeCCcCHHHHHHHHHHHHhcCCC------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999998865321 267889999999999999999
Q ss_pred HHHHHHHH
Q 010366 463 IAKLMASV 470 (512)
Q Consensus 463 I~~lv~~~ 470 (512)
|..+|..+
T Consensus 341 l~~l~~~a 348 (444)
T 2zan_A 341 ISIIVRDA 348 (444)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99999543
No 17
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=99.95 E-value=2.7e-27 Score=242.96 Aligned_cols=239 Identities=21% Similarity=0.332 Sum_probs=185.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hchh---hcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANTK---AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~~---~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..++..|++++|.+.+++.+...+... ..+. ....+++++||+||||||||++|+++|..++.+++.++++++..
T Consensus 77 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~~~l~~~ 156 (357)
T 3d8b_A 77 HGPPVNWEDIAGVEFAKATIKEIVVWPMLRPDIFTGLRGPPKGILLFGPPGTGKTLIGKCIASQSGATFFSISASSLTSK 156 (357)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGSCCSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEGGGGCCS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHHHhhChHhHhhccCCCceEEEECCCCCCHHHHHHHHHHHcCCeEEEEehHHhhcc
Confidence 456788999999999999998766542 1111 12346679999999999999999999999999999999988765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----CCCCCEEEEEeeCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~viiI~ttN~~~~l 382 (512)
+.+.....+..+|..+.... ++||||||+|.+...+.... .......++.++..++ ....+++||+|||.++.+
T Consensus 157 ~~g~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~lL~~l~~~~~~~~~~v~vI~atn~~~~l 234 (357)
T 3d8b_A 157 WVGEGEKMVRALFAVARCQQ-PAVIFIDEIDSLLSQRGDGE-HESSRRIKTEFLVQLDGATTSSEDRILVVGATNRPQEI 234 (357)
T ss_dssp STTHHHHHHHHHHHHHHHTC-SEEEEEETHHHHTBC-------CHHHHHHHHHHHHHHC----CCCCEEEEEEESCGGGB
T ss_pred ccchHHHHHHHHHHHHHhcC-CeEEEEeCchhhhccCCCCc-chHHHHHHHHHHHHHhcccccCCCCEEEEEecCChhhC
Confidence 45566777888888887654 79999999999987654322 2244556666666654 235689999999999999
Q ss_pred CHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 383 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 383 ~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++++++||+..+++++|+.++|..|+..++..... .++++.+..++..+.||++++
T Consensus 235 ~~~l~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~------------------------~l~~~~l~~la~~t~G~s~~d 290 (357)
T 3d8b_A 235 DEAARRRLVKRLYIPLPEASARKQIVINLMSKEQC------------------------CLSEEEIEQIVQQSDAFSGAD 290 (357)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHHTSCB------------------------CCCHHHHHHHHHHTTTCCHHH
T ss_pred CHHHHhhCceEEEeCCcCHHHHHHHHHHHHhhcCC------------------------CccHHHHHHHHHHcCCCCHHH
Confidence 99999999999999999999999999988865321 278889999999999999999
Q ss_pred HHHHHHHHHHHHhC------------CCCCccCHHHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYG------------SENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 463 I~~lv~~~~aa~~~------------~~~~~it~e~~~~al~~~~~ 496 (512)
|..+|..+...+.. .....|+.+||..|+.....
T Consensus 291 l~~l~~~a~~~~ir~l~~~~~~~~~~~~~~~i~~~d~~~al~~~~p 336 (357)
T 3d8b_A 291 MTQLCREASLGPIRSLQTADIATITPDQVRPIAYIDFENAFRTVRP 336 (357)
T ss_dssp HHHHHHHHHTHHHHHCCC----------CCCBCHHHHHHHHHHHGG
T ss_pred HHHHHHHHHHHHHHHhhhhhhccccccccCCcCHHHHHHHHHhcCC
Confidence 99999544322221 22367999999999987754
No 18
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=99.95 E-value=5.6e-27 Score=234.01 Aligned_cols=238 Identities=24% Similarity=0.361 Sum_probs=178.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhc-h---hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATAN-T---KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~-~---~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..++.+|++++|++.+++.+...+..... + .....|+.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 14 ~~~~~~~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~~~l~~~ 93 (297)
T 3b9p_A 14 GGAKVEWTDIAGQDVAKQALQEMVILPSVRPELFTGLRAPAKGLLLFGPPGNGKTLLARAVATECSATFLNISAASLTSK 93 (297)
T ss_dssp CSSCCCGGGSCCCHHHHHHHHHHTHHHHHCGGGSCGGGCCCSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEESTTTSSS
T ss_pred CCCCCCHHHhCChHHHHHHHHHHHHhhhhCHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeHHHHhhc
Confidence 45667899999999999999876644321 1 112245679999999999999999999999999999999988765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-----CCCCEEEEEeeCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-----QSKDIVLALATNRPGD 381 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-----~~~~viiI~ttN~~~~ 381 (512)
+.+.....+..+|..+.... |+||||||+|.+...+.... ........+.++..++. ...+++||+|||.++.
T Consensus 94 ~~~~~~~~~~~~~~~~~~~~-~~vl~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~~v~vi~~tn~~~~ 171 (297)
T 3b9p_A 94 YVGDGEKLVRALFAVARHMQ-PSIIFIDEVDSLLSERSSSE-HEASRRLKTEFLVEFDGLPGNPDGDRIVVLAATNRPQE 171 (297)
T ss_dssp SCSCHHHHHHHHHHHHHHTC-SEEEEEETGGGTSBCC------CCSHHHHHHHHHHHHHCC------CEEEEEEESCGGG
T ss_pred ccchHHHHHHHHHHHHHHcC-CcEEEeccHHHhccccccCc-chHHHHHHHHHHHHHhcccccCCCCcEEEEeecCChhh
Confidence 44556677788888887654 79999999999987654321 11112333444443321 2256999999999999
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++++||+..+++++|+.++|..|++.++..... .++++.+..++..+.||+++
T Consensus 172 l~~~l~~R~~~~i~~~~p~~~~r~~il~~~~~~~~~------------------------~~~~~~~~~la~~~~g~~~~ 227 (297)
T 3b9p_A 172 LDEAALRRFTKRVYVSLPDEQTRELLLNRLLQKQGS------------------------PLDTEALRRLAKITDGYSGS 227 (297)
T ss_dssp BCHHHHHHCCEEEECCCCCHHHHHHHHHHHHGGGSC------------------------CSCHHHHHHHHHHTTTCCHH
T ss_pred CCHHHHhhCCeEEEeCCcCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHcCCCCHH
Confidence 999999999999999999999999999988865321 26788999999999999999
Q ss_pred HHHHHHHHHHHHHhC------------CCCCccCHHHHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYG------------SENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 462 dI~~lv~~~~aa~~~------------~~~~~it~e~~~~al~~~~ 495 (512)
+|..+|..+...+.. .....||.+||..|+....
T Consensus 228 ~l~~l~~~a~~~a~r~~~~~~~~~~~~~~~~~i~~~d~~~a~~~~~ 273 (297)
T 3b9p_A 228 DLTALAKDAALEPIRELNVEQVKCLDISAMRAITEQDFHSSLKRIR 273 (297)
T ss_dssp HHHHHHHHHTTHHHHTCC--------CCCCCCCCHHHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHHhhhhcccccccccCCcCHHHHHHHHHHcC
Confidence 999999544322221 1235799999999986543
No 19
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=99.95 E-value=4.6e-28 Score=242.90 Aligned_cols=238 Identities=24% Similarity=0.382 Sum_probs=176.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHh-hch----hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGAT-ANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~----~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..|..+|++++|.+.+++.+...+... ..+ ..+..++.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 8 ~~~~~~~~di~G~~~~~~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~~~~l~~ 87 (301)
T 3cf0_A 8 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 87 (301)
T ss_dssp ECCCCCGGGSCSCHHHHHHHHHHHHHHHHCHHHHHHHCCCCCSEEEEECSSSSSHHHHHHHHHHHTTCEEEEECHHHHHH
T ss_pred cCCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCceEEEECCCCcCHHHHHHHHHHHhCCCEEEEEhHHHHh
Confidence 456677999999999999998876543 111 112356678999999999999999999999999999999876532
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+.....+..+|..+.... |+||||||+|.+...+.... .......+++.++..++ ....+++||+|||.++.
T Consensus 88 ~~~g~~~~~~~~~f~~a~~~~-p~il~iDEid~l~~~~~~~~~~~~~~~~~~~~~lL~~l~~~~~~~~v~vi~atn~~~~ 166 (301)
T 3cf0_A 88 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 166 (301)
T ss_dssp HHHTTCTTHHHHHHHHHHHTC-SEEEEECSTTHHHHHHTTTTCCSSCSCCHHHHHHHHHHHSSCTTSSEEEEEEESCGGG
T ss_pred hhcCchHHHHHHHHHHHHhcC-CeEEEEEChHHHhhccCCCcCCcchHHHHHHHHHHHHhhcccCCCCEEEEEecCCccc
Confidence 22333456778898887655 89999999999987764321 01112234455555553 23467999999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+++++++ ||+..++|++|+.++|..|++.++..... ..+..+..++..+.||+
T Consensus 167 ld~al~r~gRf~~~i~i~~p~~~~r~~il~~~l~~~~~-------------------------~~~~~~~~la~~~~g~s 221 (301)
T 3cf0_A 167 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------------------AKDVDLEFLAKMTNGFS 221 (301)
T ss_dssp SCGGGGSTTSSCEEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CSSCCHHHHHHTCSSCC
T ss_pred cChHHhcCCccceEEecCCcCHHHHHHHHHHHHccCCC-------------------------CccchHHHHHHHcCCCC
Confidence 9999998 99999999999999999999988865321 12234678888999999
Q ss_pred HHHHHHHHHHHHHHHhCC-------------------------CCCccCHHHHHHHHHHHH
Q 010366 460 GREIAKLMASVQAAVYGS-------------------------ENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~~~-------------------------~~~~it~e~~~~al~~~~ 495 (512)
|+||..+|..+...+... ....|+.+||..|++...
T Consensus 222 g~dl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~al~~~~ 282 (301)
T 3cf0_A 222 GADLTEICQRACKLAIRESIESEIRRERERQTNPSAMEVEEDDPVPEIRRDHFEEAMRFAR 282 (301)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHC--------------------CCCBCHHHHHHHHTTCC
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccccccccccccccCCccCHHHHHHHHHHcC
Confidence 999999995443322110 014689999999998764
No 20
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=99.95 E-value=1.3e-26 Score=240.60 Aligned_cols=237 Identities=27% Similarity=0.389 Sum_probs=176.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhch----hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANT----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~----~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..++..|++++|++.+++.+..++...... ...+.+++++||+||||||||++|+++|..++.+|+.++++.+..
T Consensus 108 ~~~~~~~~~iiG~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~~~l~~~ 187 (389)
T 3vfd_A 108 NGTAVKFDDIAGQDLAKQALQEIVILPSLRPELFTGLRAPARGLLLFGPPGNGKTMLAKAVAAESNATFFNISAASLTSK 187 (389)
T ss_dssp CSCCCCGGGSCSCHHHHHHHHHHTHHHHHCTTTSCGGGCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECSCCC---
T ss_pred cCCCCChHHhCCHHHHHHHHHHHHHHhccCHHHhcccCCCCceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeHHHhhcc
Confidence 567788999999999999998766543221 112345679999999999999999999999999999999998765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----CCCCCEEEEEeeCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----DQSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----~~~~~viiI~ttN~~~~l 382 (512)
+.+.....+..+|..+.... ++||||||||.++..+.... .......++.++..++ ....+++||+|||.++.+
T Consensus 188 ~~g~~~~~~~~~~~~a~~~~-~~il~iDEid~l~~~~~~~~-~~~~~~~~~~ll~~l~~~~~~~~~~v~vI~atn~~~~l 265 (389)
T 3vfd_A 188 YVGEGEKLVRALFAVARELQ-PSIIFIDQVDSLLCERREGE-HDASRRLKTEFLIEFDGVQSAGDDRVLVMGATNRPQEL 265 (389)
T ss_dssp ----CHHHHHHHHHHHHHSS-SEEEEEETGGGGC---------CTHHHHHHHHHHHHHHHC-----CEEEEEEESCGGGC
T ss_pred ccchHHHHHHHHHHHHHhcC-CeEEEEECchhhcccCCCcc-chHHHHHHHHHHHHhhcccccCCCCEEEEEecCCchhc
Confidence 44556677888999888765 78999999999977654322 1123334444444432 235679999999999999
Q ss_pred CHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 383 DSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 383 ~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++++++||+..++|+.|+.++|..|++.++..... .++++.+..|+..+.||++++
T Consensus 266 ~~~l~~R~~~~i~i~~p~~~~r~~il~~~~~~~~~------------------------~l~~~~~~~la~~~~g~~~~~ 321 (389)
T 3vfd_A 266 DEAVLRRFIKRVYVSLPNEETRLLLLKNLLCKQGS------------------------PLTQKELAQLARMTDGYSGSD 321 (389)
T ss_dssp CHHHHTTCCEEEECCCCCHHHHHHHHHHHHTTSCC------------------------CSCHHHHHHHHHHTTTCCHHH
T ss_pred CHHHHcCcceEEEcCCcCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHcCCCCHHH
Confidence 99999999989999999999999999988765321 278889999999999999999
Q ss_pred HHHHHHHHHHHHhCC------------CCCccCHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGS------------ENCVLDPSLFREVVDYK 494 (512)
Q Consensus 463 I~~lv~~~~aa~~~~------------~~~~it~e~~~~al~~~ 494 (512)
|..|+..+...+... ....|+.+||..++...
T Consensus 322 l~~L~~~a~~~~~rel~~~~~~~~~~~~~~~i~~~d~~~al~~~ 365 (389)
T 3vfd_A 322 LTALAKDAALGPIRELKPEQVKNMSASEMRNIRLSDFTESLKKI 365 (389)
T ss_dssp HHHHHHHHTTHHHHTSCCC---CCSSSCCCCCCHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHhhhhhhhhccchhhcCCcCHHHHHHHHHHc
Confidence 999995443322211 23579999999998753
No 21
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=99.94 E-value=2.7e-26 Score=243.88 Aligned_cols=240 Identities=27% Similarity=0.413 Sum_probs=188.8
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHh-hch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGAT-ANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~-~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
.+..+|++++|.+..+..+...+... ..+ .. +..++.++|||||||||||++|+++|..++.+|+.++|+++..
T Consensus 198 ~~~~~~~~i~G~~~~~~~l~~~i~~~l~~~~~~~~~g~~~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn~~~l~~~ 277 (489)
T 3hu3_A 198 LNEVGYDDIGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (489)
T ss_dssp HTCCCGGGCCSCHHHHHHHHHHTHHHHHCHHHHHHHTCCCCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEEHHHHHTS
T ss_pred cCCCCHHHcCCHHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEEchHhhhh
Confidence 45567999999999999998766543 111 11 2356679999999999999999999999999999999988754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCH
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 384 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 384 (512)
+.+.....+..+|..+.... |++|||||||.+.+++.... ......+++.|+..++ ....+++||+|||.++.+++
T Consensus 278 ~~g~~~~~~~~~f~~A~~~~-p~iLfLDEId~l~~~~~~~~-~~~~~~~~~~LL~~ld~~~~~~~v~vIaaTn~~~~Ld~ 355 (489)
T 3hu3_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (489)
T ss_dssp CTTHHHHHHHHHHHHHHHTC-SEEEEEESHHHHCBCTTSCC-CHHHHHHHHHHHHHHHHSCTTSCEEEEEEESCGGGBCG
T ss_pred hcchhHHHHHHHHHHHHhcC-CcEEEecchhhhcccccccc-chHHHHHHHHHHHHhhccccCCceEEEEecCCccccCH
Confidence 55677788899999998765 79999999999988765433 3444556666666554 34568999999999999999
Q ss_pred HHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++.+ ||+..++|++|+.++|..|++.++..... ..+..+..++..+.||+++|
T Consensus 356 al~r~gRf~~~i~i~~P~~~eR~~IL~~~~~~~~l-------------------------~~~~~l~~la~~t~g~s~~d 410 (489)
T 3hu3_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------------------ADDVDLEQVANETHGHVGAD 410 (489)
T ss_dssp GGGSTTSSCEEEECCCCCHHHHHHHHHHHTTTSCB-------------------------CTTCCHHHHHHTCTTCCHHH
T ss_pred HHhCCCcCceEEEeCCCCHHHHHHHHHHHHhcCCC-------------------------cchhhHHHHHHHccCCcHHH
Confidence 9998 99999999999999999999988765321 22335788999999999999
Q ss_pred HHHHHHHHHHHHhCCCC-----------------CccCHHHHHHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGSEN-----------------CVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 463 I~~lv~~~~aa~~~~~~-----------------~~it~e~~~~al~~~~~~~~ 499 (512)
|..||..+...+..... ..||.++|..|++...+...
T Consensus 411 L~~L~~~A~~~a~r~~~~~i~~~~~~~~~~~~~~~~vt~edf~~Al~~~~ps~~ 464 (489)
T 3hu3_A 411 LAALCSEAALQAIRKKMDLIDLEDETIDAEVMNSLAVTMDDFRWALSQSNPSAL 464 (489)
T ss_dssp HHHHHHHHHHHHHHTTTTTCCTTCSSCCHHHHHHCCBCHHHHHHHHTSHHHHHH
T ss_pred HHHHHHHHHHHHHHhccccccccccccchhhcccCcCCHHHHHHHHHhCCchhh
Confidence 99999655444332211 25899999999998877654
No 22
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=99.94 E-value=2.1e-26 Score=227.59 Aligned_cols=241 Identities=23% Similarity=0.331 Sum_probs=170.5
Q ss_pred cCCCCCCccccChHHHHHHHHHH-HHhhch---hh-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLS-GATANT---KA-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~-~~~~~~---~~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
.|..+|++|.|.+++++.+...+ ....+. .. +-.++++++|+||||||||++++++|..++.+++.+++.++..
T Consensus 4 ~~~~~~~di~g~~~~~~~l~~~i~~~~~~~~~l~~~~l~~~~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~g~~l~~~ 83 (274)
T 2x8a_A 4 VPNVTWADIGALEDIREELTMAILAPVRNPDQFKALGLVTPAGVLLAGPPGCGKTLLAKAVANESGLNFISVKGPELLNM 83 (274)
T ss_dssp --------CCHHHHHHHHHHHHHTHHHHSHHHHHHTTCCCCSEEEEESSTTSCHHHHHHHHHHHTTCEEEEEETTTTCSS
T ss_pred CCCCCHHHhCCHHHHHHHHHHHHHHHhhCHHHHHHcCCCCCCeEEEECCCCCcHHHHHHHHHHHcCCCEEEEEcHHHHhh
Confidence 35567999999999999997643 333322 11 2245578999999999999999999999999999999988765
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCH
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 384 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 384 (512)
+.+.....+..+|..+.... |+++|+||+|.++..+.... .......++.++..++ .....++++++||.|+.+|+
T Consensus 84 ~~~~~~~~i~~vf~~a~~~~-p~i~~~Deid~~~~~r~~~~-~~~~~~~~~~~l~~Lsgg~~~~~~i~ia~tn~p~~LD~ 161 (274)
T 2x8a_A 84 YVGESERAVRQVFQRAKNSA-PCVIFFDEVDALCPRRSDRE-TGASVRVVNQLLTEMDGLEARQQVFIMAATNRPDIIDP 161 (274)
T ss_dssp TTHHHHHHHHHHHHHHHHTC-SEEEEEETCTTTCC----------CTTHHHHHHHHHHTCCSTTCEEEEEEESCGGGSCH
T ss_pred hhhHHHHHHHHHHHHHHhcC-CCeEeeehhhhhhcccCCCc-chHHHHHHHHHHHhhhcccccCCEEEEeecCChhhCCH
Confidence 45566778889999886554 79999999999876543221 1122345677777664 34556888999999999999
Q ss_pred HHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--CCCcH
Q 010366 385 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--EGFSG 460 (512)
Q Consensus 385 al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--~g~s~ 460 (512)
++++ ||+..|++++|+.++|.+|++.++...... ....+.++..+|..+ +||||
T Consensus 162 al~r~gRfd~~i~~~~P~~~~r~~il~~~~~~~~~~----------------------~~~~~~~~~~la~~~~~~g~sg 219 (274)
T 2x8a_A 162 AILRPGRLDKTLFVGLPPPADRLAILKTITKNGTKP----------------------PLDADVNLEAIAGDLRCDCYTG 219 (274)
T ss_dssp HHHSTTSSCEEEECCSCCHHHHHHHHHHHTTTTBTT----------------------BBCTTCCHHHHHTCSGGGSCCH
T ss_pred hhcCcccCCeEEEeCCcCHHHHHHHHHHHHhcccCC----------------------CCccccCHHHHHHhhccCCcCH
Confidence 9998 999999999999999999999887531100 012334578888864 59999
Q ss_pred HHHHHHHHHHHHHHhC-----------CCCCccCHHHHHHHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYG-----------SENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~-----------~~~~~it~e~~~~al~~~~~~ 497 (512)
+||..+|..+...+.. .....|+.+||..|++...+.
T Consensus 220 adl~~l~~~a~~~a~~~~~~~~~~~~~~~~~~i~~~df~~al~~~~ps 267 (274)
T 2x8a_A 220 ADLSALVREASICALRQEMARQKSGNEKGELKVSHKHFEEAFKKVRSS 267 (274)
T ss_dssp HHHHHHHHHHHHHHHHHHC-----------CCBCHHHHHHHHTTCCCC
T ss_pred HHHHHHHHHHHHHHHHHHHhhccccccccCCeecHHHHHHHHHHhcCC
Confidence 9999999544332221 122479999999999876543
No 23
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=99.94 E-value=2.3e-26 Score=244.08 Aligned_cols=238 Identities=24% Similarity=0.320 Sum_probs=189.1
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-Cc
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LG 308 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~ 308 (512)
+..+|++|+|.++++..+.+++.....+.. +..++++++|+||||||||++|+++|..++.+++.++++++.. +.
T Consensus 26 ~~~~f~dv~G~~~~k~~l~~lv~~l~~~~~~~~lg~~ip~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g~~~~~~~~ 105 (499)
T 2dhr_A 26 PKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMFV 105 (499)
T ss_dssp CCCCTTSSCSCHHHHHHHHHHHHHHHCGGGTTTTSCCCCSEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEGGGGTSSCT
T ss_pred CCCCHHHcCCcHHHHHHHHHHHHHhhchhhhhhccCCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEehhHHHHhhh
Confidence 566799999999999999988877655432 2245578999999999999999999999999999999988765 44
Q ss_pred hhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCH
Q 010366 309 PQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 384 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 384 (512)
+.....+..+|+.+.... |+++||||+|.+...+... .........++.++..++ .....+++|++||.|+.+|+
T Consensus 106 g~~~~~v~~lfq~a~~~~-p~il~IDEId~l~~~r~~~~~~~~~e~~~~l~~LL~~Ldg~~~~~~viviAatn~p~~LD~ 184 (499)
T 2dhr_A 106 GVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILDP 184 (499)
T ss_dssp THHHHHHHHHTTTSSSSS-SCEEEEECGGGTCCCSSSSTTTSSHHHHHHHHHHHHHGGGCCSSCCCEEEECCSCGGGSCT
T ss_pred hhHHHHHHHHHHHHHhcC-CCEEEEehHHHHHHhhccCcCCCcHHHHHHHHHHHHHhcccccCccEEEEEecCChhhcCc
Confidence 555667788888775433 7999999999987665431 224556678899998875 34456889999999999999
Q ss_pred HHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++++ ||+..+.|++|+.++|.+|++.++.... ..++..+..+|..+.||+|+|
T Consensus 185 aLlr~gRfdr~i~i~~Pd~~~R~~IL~~~~~~~~-------------------------l~~dv~l~~lA~~t~G~~gad 239 (499)
T 2dhr_A 185 ALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-------------------------LAEDVDLALLAKRTPGFVGAD 239 (499)
T ss_dssp TTSSTTSSCCEEECCCCCHHHHHHHHHHTTSSSC-------------------------CCCSSTTHHHHTTSCSCCHHH
T ss_pred ccccccccceEEecCCCCHHHHHHHHHHHHhcCC-------------------------CChHHHHHHHHHhcCCCCHHH
Confidence 9998 9999999999999999999987654311 012334788999999999999
Q ss_pred HHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 463 I~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
|..+|+.+...+...+...||.++|..|++.....
T Consensus 240 L~~lv~~Aa~~A~~~~~~~It~~dl~~al~~v~~~ 274 (499)
T 2dhr_A 240 LENLLNEAALLAAREGRRKITMKDLEEAADRVMML 274 (499)
T ss_dssp HHHHHHHHHHHHTTTCCSSCCSHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHhCCCccCHHHHHHHHHHHhcc
Confidence 99999766655554455789999999999876543
No 24
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=99.94 E-value=7.5e-26 Score=220.88 Aligned_cols=234 Identities=24% Similarity=0.327 Sum_probs=176.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchh---h-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTK---A-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~---~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..|..+|++++|.++++..+..+........ . ...++++++|+||||||||+++++++..++.+++.+++.++..
T Consensus 9 ~~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~~~~~~~~~~~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~~~~~~~~ 88 (254)
T 1ixz_A 9 EAPKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEM 88 (254)
T ss_dssp CCCSCCGGGCCSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCSEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHS
T ss_pred CCCCCCHHHhCCcHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCCCCHHHHHHHHHHHhCCCEEEeeHHHHHHH
Confidence 4567789999999999999988776654321 1 1234567999999999999999999999999999998766532
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDL 382 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l 382 (512)
..+.....+..+|+.+.... |+++|+||+|.+...+... .........++.++..++ .....++++++||.|+.+
T Consensus 89 ~~~~~~~~i~~~~~~~~~~~-~~i~~~Deid~l~~~~~~~~~~~~~~~~~~~~~ll~~l~g~~~~~~~i~~a~t~~p~~l 167 (254)
T 1ixz_A 89 FVGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDIL 167 (254)
T ss_dssp CTTHHHHHHHHHHHHHTTSS-SEEEEEETHHHHHC---------CHHHHHHHHHHHHHHHTCCTTCCEEEEEEESCGGGS
T ss_pred HhhHHHHHHHHHHHHHHhcC-CeEEEehhhhhhhcccCccccccchHHHHHHHHHHHHHhCCCCCCCEEEEEccCCchhC
Confidence 23344566778888876443 7899999999987655421 123445667778877764 334567888999999999
Q ss_pred CHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH
Q 010366 383 DSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 460 (512)
Q Consensus 383 ~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~ 460 (512)
|+++++ ||+..++|++|+.++|.+|++.++.... ..++..+..+|..+.||++
T Consensus 168 d~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~-------------------------~~~~~~~~~la~~~~G~~~ 222 (254)
T 1ixz_A 168 DPALLRPGRFDRQIAIDAPDVKGREQILRIHARGKP-------------------------LAEDVDLALLAKRTPGFVG 222 (254)
T ss_dssp CGGGGSTTSSCEEEECCSCCHHHHHHHHHHHHTTSC-------------------------BCTTCCHHHHHHTCTTCCH
T ss_pred CHHHcCCCcCCeEEeeCCcCHHHHHHHHHHHHcCCC-------------------------CCcccCHHHHHHHcCCCCH
Confidence 999998 9999999999999999999987764321 0123347889999999999
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
+||..+|..+...+.......||.+++.+|+
T Consensus 223 ~dl~~~~~~a~~~a~~~~~~~I~~~dl~~a~ 253 (254)
T 1ixz_A 223 ADLENLLNEAALLAAREGRRKITMKDLEEAA 253 (254)
T ss_dssp HHHHHHHHHHHHHHHHTTCSSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHhcCCCcCHHHHHHHh
Confidence 9999999766555444445789999999885
No 25
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=99.94 E-value=1.2e-28 Score=242.56 Aligned_cols=241 Identities=24% Similarity=0.337 Sum_probs=177.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
..+...|++++|++.+++.+..++.....+.. ...+++++||+||||||||++|+++|..++.+++.++++.+..
T Consensus 4 ~~~~~~~~~i~G~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~~~~~~~~v~~~~~~~~ 83 (268)
T 2r62_A 4 EKPNVRFKDMAGNEEAKEEVVEIVDFLKYPERYANLGAKIPKGVLLVGPPGTGKTLLAKAVAGEAHVPFFSMGGSSFIEM 83 (268)
T ss_dssp CCCCCCSTTSSSCTTTHHHHHHHHHHHHCHHHHHHHSCCCCSCCCCBCSSCSSHHHHHHHHHHHHTCCCCCCCSCTTTTS
T ss_pred cCCCCCHHHhCCcHHHHHHHHHHHHHHHChHHHHHCCCCCCceEEEECCCCCcHHHHHHHHHHHhCCCEEEechHHHHHh
Confidence 35567799999999999999887776544322 2345578999999999999999999999999999999888754
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC---CHHHHHHHHHHHHHcCC---CCCCEEEEEeeCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM---SEAQRSALNALLFRTGD---QSKDIVLALATNRPG 380 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~---~~~~~~~l~~ll~~~~~---~~~~viiI~ttN~~~ 380 (512)
+.+.....+..+|..+.... ++||||||+|.+...+..... .......++.++..++. ...+++||+|||.++
T Consensus 84 ~~~~~~~~~~~~~~~a~~~~-~~vl~iDEid~l~~~~~~~~~~~~~~~~~~~~~~ll~~l~~~~~~~~~v~vi~ttn~~~ 162 (268)
T 2r62_A 84 FVGLGASRVRDLFETAKKQA-PSIIFIDEIDAIGKSRAAGGVVSGNDEREQTLNQLLAEMDGFGSENAPVIVLAATNRPE 162 (268)
T ss_dssp CSSSCSSSSSTTHHHHHHSC-SCEEEESCGGGTTC----------CCCSCSSTTTTTTTTTCSSCSCSCCEEEECBSCCT
T ss_pred hcchHHHHHHHHHHHHHhcC-CeEEEEeChhhhcccccccccCCCchhHHHHHHHHHHHhhCcccCCCCEEEEEecCCch
Confidence 22222334456777777654 789999999999765432110 00112234556655543 334589999999999
Q ss_pred CCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCC
Q 010366 381 DLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGF 458 (512)
Q Consensus 381 ~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~ 458 (512)
.+++++++ ||+..+.|++|+.++|..|++.++..... .++..+..++..+.||
T Consensus 163 ~ld~~l~r~~Rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~la~~~~g~ 217 (268)
T 2r62_A 163 ILDPALMRPGRFDRQVLVDKPDFNGRVEILKVHIKGVKL-------------------------ANDVNLQEVAKLTAGL 217 (268)
T ss_dssp TSCGGGGSSSSSCCCCBCCCCCTTTHHHHHHHHTSSSCC-------------------------CSSCCTTTTTSSSCSS
T ss_pred hcCHhHcCCCCCCeEEEecCcCHHHHHHHHHHHHhcCCC-------------------------CCccCHHHHHHHcCCC
Confidence 99999998 99999999999999999999888754311 1222356678889999
Q ss_pred cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 459 SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 459 s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
+|++|..+|..+...+...+...|+.+++.+++.......
T Consensus 218 ~g~dl~~l~~~a~~~a~~~~~~~i~~~~~~~a~~~~~~~~ 257 (268)
T 2r62_A 218 AGADLANIINEAALLAGRNNQKEVRQQHLKEAVERGIAGL 257 (268)
T ss_dssp CHHHHHHHHHHHHHTTSSSCCCSCCHHHHHTSCTTCCCCC
T ss_pred CHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHhhcc
Confidence 9999999998777766666567899999999887654443
No 26
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=99.93 E-value=8e-25 Score=216.65 Aligned_cols=233 Identities=24% Similarity=0.328 Sum_probs=176.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchh---h-cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-C
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTK---A-HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-L 307 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~---~-~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~ 307 (512)
.+..+|++++|.++++..+..+........ . ....+++++|+||||||||+++++++..++.+++.+++.++.. .
T Consensus 34 ~~~~~~~~i~g~~~~~~~l~~l~~~~~~~~~l~~~~~~~~~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~~~~~~~~~ 113 (278)
T 1iy2_A 34 APKVTFKDVAGAEEAKEELKEIVEFLKNPSRFHEMGARIPKGVLLVGPPGVGKTHLARAVAGEARVPFITASGSDFVEMF 113 (278)
T ss_dssp CCCCCGGGSSSCHHHHHHHHHHHHHHHCHHHHHHTTCCCCCEEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHHHST
T ss_pred CCCCCHHHhCChHHHHHHHHHHHHHHHCHHHHHHcCCCCCCeEEEECCCcChHHHHHHHHHHHcCCCEEEecHHHHHHHH
Confidence 466779999999999999988776654322 1 1234457999999999999999999999999999998766532 2
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC--CCCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCCCCCCC
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT--YMSEAQRSALNALLFRTGD--QSKDIVLALATNRPGDLD 383 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~--~~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~~~~l~ 383 (512)
.+.....+..+|+.+.... |+++|+||+|.+...+... .........++.++..++. ....++++++||.|+.+|
T Consensus 114 ~~~~~~~i~~~~~~~~~~~-~~i~~iDeid~l~~~~~~~~~~~~~~~~~~~~~ll~~lsgg~~~~~~i~~a~t~~p~~ld 192 (278)
T 1iy2_A 114 VGVGAARVRDLFETAKRHA-PCIVFIDEIDAVGRKRGSGVGGGNDEREQTLNQLLVEMDGFEKDTAIVVMAATNRPDILD 192 (278)
T ss_dssp TTHHHHHHHHHHHHHHTSC-SEEEEEETHHHHHCC--------CHHHHHHHHHHHHHHTTCCTTCCEEEEEEESCTTSSC
T ss_pred hhHHHHHHHHHHHHHHhcC-CcEEehhhhHhhhcccccccCCcchHHHHHHHHHHHHHhCCCCCCCEEEEEecCCchhCC
Confidence 3344566778888876544 7899999999987654321 1133456677888887752 344578889999999999
Q ss_pred HHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 384 SAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 384 ~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++ ||+..++|++|+.++|.+|++.++..... .++..+..++..+.|++++
T Consensus 193 ~~l~r~~rf~~~i~i~~p~~~~r~~il~~~~~~~~~-------------------------~~~~~~~~la~~~~G~~~~ 247 (278)
T 1iy2_A 193 PALLRPGRFDRQIAIDAPDVKGREQILRIHARGKPL-------------------------AEDVDLALLAKRTPGFVGA 247 (278)
T ss_dssp HHHHSTTSSCCEEECCCCCHHHHHHHHHHHHTTSCB-------------------------CTTCCHHHHHHTCTTCCHH
T ss_pred HhHcCCCcCCeEEEeCCcCHHHHHHHHHHHHccCCC-------------------------CcccCHHHHHHHcCCCCHH
Confidence 99998 99999999999999999999977643210 1223477899999999999
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
||..+|..+...+...+...||.+++.+|+
T Consensus 248 dl~~l~~~a~~~a~~~~~~~I~~~dl~~a~ 277 (278)
T 1iy2_A 248 DLENLLNEAALLAAREGRRKITMKDLEEAA 277 (278)
T ss_dssp HHHHHHHHHHHHHHHTTCCSBCHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHhCCCCcCHHHHHHHh
Confidence 999999766554444444689999999886
No 27
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.91 E-value=3.6e-23 Score=235.01 Aligned_cols=361 Identities=18% Similarity=0.184 Sum_probs=232.1
Q ss_pred hhhhhHHHHHHHHHHHHHHHHhhHHHHHhhHHhhHhHHHHHHhhHHHHHHHHHHhHHHHHHHhHHHHHHHHHHHHhhHHH
Q 010366 36 FRHVYKFDWHLLQAENEYHRARNQELVKMQEESSIRLEQARRATEEQIQAQKRQTEREKAEIERETIRVRAMAEAEGRAH 115 (512)
Q Consensus 36 ~~~~~~l~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 115 (512)
-..|+.++|++.+++.+..++.++.+....+ +....++....+..++..+..+|..++..++.....+...++....+.
T Consensus 400 p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 478 (854)
T 1qvr_A 400 PEEIDALERKKLQLEIEREALKKEKDPDSQE-RLKAIEAEIAKLTEEIAKLRAEWEREREILRKLREAQHRLDEVRREIE 478 (854)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSSCSSHHHHS-CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHHHHHHhccccccHH-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHH
Confidence 4678999999999999999888775432222 223333333566678888888888888888777777666665554444
Q ss_pred HHHHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHH
Q 010366 116 EAKLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRI 195 (512)
Q Consensus 116 ~~~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~ 195 (512)
...++.|.... .+.++..++.+.......... .....+..++.....+...|.++
T Consensus 479 ~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~-------------------~~~~~~~~~~v~~~~l~~~v~~~ 533 (854)
T 1qvr_A 479 LAERQYDLNRA------AELRYGELPKLEAEVEALSEK-------------------LRGARFVRLEVTEEDIAEIVSRW 533 (854)
T ss_dssp HHTTTTCHHHH------HHHHTTHHHHHHHHHHHHHHH-------------------SSSCSSCCSEECHHHHHHHHHTT
T ss_pred HHHhcccHHHH------HHHhhhhhHHHHHHHHHHHhh-------------------hcccccccCCcCHHHHHHHHHHH
Confidence 44444333322 333334444443332221110 00123344556666777777777
Q ss_pred hCCCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhc-hhhcCCCCcceEEe
Q 010366 196 LGQPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATAN-TKAHNAPFRNMLFY 274 (512)
Q Consensus 196 l~~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~-~~~~~~p~~~vLL~ 274 (512)
++.|.. .+.......+..+.... +++|+|++.++..+...+..... ...++.|..++||+
T Consensus 534 ~~ip~~------------~~~~~~~~~l~~l~~~l-------~~~viG~~~a~~~l~~~i~~~~~g~~~~~~p~~~vLl~ 594 (854)
T 1qvr_A 534 TGIPVS------------KLLEGEREKLLRLEEEL-------HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFL 594 (854)
T ss_dssp SSCHHH------------HTTCCHHHHHHSHHHHH-------HHHSCSCHHHHHHHHHHHHHHGGGCSCSSSCSEEEEEB
T ss_pred hCCChH------------hhcHHHHHHHHHHHHHH-------hcccCCcHHHHHHHHHHHHHHhcccCCCCCCceEEEEE
Confidence 775431 11111111222211111 47899999999999776655433 34455666789999
Q ss_pred cCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchh-----------HHHHHHHHHHHHHhcCCCcEEEEccchhhh
Q 010366 275 GPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQ-----------AVTKIHQLFDWAKKSKRGLLLFIDEADAFL 340 (512)
Q Consensus 275 GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~-----------~~~~l~~lf~~a~~~~~~~vl~lDEid~l~ 340 (512)
||||||||++|++++..+ +.+++.++|+.+...... +..... .+..+....+++||||||++.+
T Consensus 595 Gp~GtGKT~lA~~la~~~~~~~~~~i~i~~~~~~~~~~~s~l~g~~~~~~G~~~~g-~l~~~~~~~~~~vl~lDEi~~l- 672 (854)
T 1qvr_A 595 GPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVSRLIGAPPGYVGYEEGG-QLTEAVRRRPYSVILFDEIEKA- 672 (854)
T ss_dssp SCSSSSHHHHHHHHHHHHHSSGGGEEEECTTTCCSSGGGGGC---------------CHHHHHHHCSSEEEEESSGGGS-
T ss_pred CCCCCCHHHHHHHHHHHhcCCCCcEEEEechhccchhHHHHHcCCCCCCcCccccc-hHHHHHHhCCCeEEEEeccccc-
Confidence 999999999999999998 789999999887652100 111112 2333334466899999999986
Q ss_pred hhcccCCCCHHHHHHHHHHHHHcCCC-----------CCCEEEEEeeCC--------------------------CCCCC
Q 010366 341 CERNKTYMSEAQRSALNALLFRTGDQ-----------SKDIVLALATNR--------------------------PGDLD 383 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~ll~~~~~~-----------~~~viiI~ttN~--------------------------~~~l~ 383 (512)
+. .+++.|++.+++. ..+++||+|||. ...+.
T Consensus 673 --------~~---~~~~~Ll~~l~~~~~~~~~g~~vd~~~~iiI~tsn~~~~~~~~~~~~~~~~~~l~~~v~~~~~~~f~ 741 (854)
T 1qvr_A 673 --------HP---DVFNILLQILDDGRLTDSHGRTVDFRNTVIILTSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFR 741 (854)
T ss_dssp --------CH---HHHHHHHHHHTTTEECCSSSCCEECTTEEEEEECCTTHHHHHHHHHTTCCHHHHHHHHHHHHHTTSC
T ss_pred --------CH---HHHHHHHHHhccCceECCCCCEeccCCeEEEEecCcChHHHhhhcccccchHHHHHHHHHHHHhhCC
Confidence 33 4455555555422 357889999997 24688
Q ss_pred HHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC--CCcHH
Q 010366 384 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSGR 461 (512)
Q Consensus 384 ~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--g~s~~ 461 (512)
|+|++||+.++.|++|+.+++..|+..++..+..... .. ++. ..+++++++.|+.+.+ .++.|
T Consensus 742 ~~l~~Rl~~~i~~~pl~~edi~~i~~~~l~~~~~~~~------------~~--~~~-~~~~~~a~~~L~~~~~~~~gn~R 806 (854)
T 1qvr_A 742 PEFLNRLDEIVVFRPLTKEQIRQIVEIQLSYLRARLA------------EK--RIS-LELTEAAKDFLAERGYDPVFGAR 806 (854)
T ss_dssp HHHHHTCSBCCBCCCCCHHHHHHHHHHHHHHHHHHHH------------TT--TCE-EEECHHHHHHHHHHHCBTTTBTS
T ss_pred HHHHHhcCeEEeCCCCCHHHHHHHHHHHHHHHHHHHH------------hC--Cce-EEECHHHHHHHHHcCCCCCCChH
Confidence 9999999999999999999999999999887543211 00 111 2389999999999876 67889
Q ss_pred HHHHHHHH
Q 010366 462 EIAKLMAS 469 (512)
Q Consensus 462 dI~~lv~~ 469 (512)
+|..++..
T Consensus 807 ~L~~~i~~ 814 (854)
T 1qvr_A 807 PLRRVIQR 814 (854)
T ss_dssp THHHHHHH
T ss_pred HHHHHHHH
Confidence 99998843
No 28
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=99.88 E-value=3.3e-21 Score=195.71 Aligned_cols=217 Identities=19% Similarity=0.227 Sum_probs=164.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhH
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~ 311 (512)
.+.+.+|++++|++.++..+...+.... ..+.++.++||+||||||||++|+++|+.++.+|+.++++.+..
T Consensus 22 ~~~p~~~~~iiG~~~~~~~l~~~l~~~~---~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~~~~~~~~----- 93 (338)
T 3pfi_A 22 SLRPSNFDGYIGQESIKKNLNVFIAAAK---KRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTTAAPMIEK----- 93 (338)
T ss_dssp -CCCCSGGGCCSCHHHHHHHHHHHHHHH---HTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEEEGGGCCS-----
T ss_pred ccCCCCHHHhCChHHHHHHHHHHHHHHH---hcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEecchhccc-----
Confidence 4566689999999999999977765443 22345568999999999999999999999999999999977642
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC---------------CCCCEEEEEee
Q 010366 312 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------------QSKDIVLALAT 376 (512)
Q Consensus 312 ~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---------------~~~~viiI~tt 376 (512)
...+...+. ....+++|||||++.+ +......|..+++.... ...++++|++|
T Consensus 94 ~~~~~~~~~---~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~at 161 (338)
T 3pfi_A 94 SGDLAAILT---NLSEGDILFIDEIHRL---------SPAIEEVLYPAMEDYRLDIIIGSGPAAQTIKIDLPKFTLIGAT 161 (338)
T ss_dssp HHHHHHHHH---TCCTTCEEEEETGGGC---------CHHHHHHHHHHHHTSCC---------CCCCCCCCCCCEEEEEE
T ss_pred hhHHHHHHH---hccCCCEEEEechhhc---------CHHHHHHHHHHHHhccchhhcccCccccceecCCCCeEEEEeC
Confidence 122222322 2355899999999997 33445555555543210 11248999999
Q ss_pred CCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC
Q 010366 377 NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 456 (512)
Q Consensus 377 N~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 456 (512)
|....+++++++||+.++.|++|+.+++..++..++..... .++++.+..++..+.
T Consensus 162 n~~~~l~~~L~~R~~~~i~l~~~~~~e~~~il~~~~~~~~~------------------------~~~~~~~~~l~~~~~ 217 (338)
T 3pfi_A 162 TRAGMLSNPLRDRFGMQFRLEFYKDSELALILQKAALKLNK------------------------TCEEKAALEIAKRSR 217 (338)
T ss_dssp SCGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC------------------------EECHHHHHHHHHTTT
T ss_pred CCccccCHHHHhhcCEEeeCCCcCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHHC
Confidence 99999999999999999999999999999999988765421 278889999999665
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 457 GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 457 g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
| +++++..++..+...+.......|+.+++..++..
T Consensus 218 G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 253 (338)
T 3pfi_A 218 S-TPRIALRLLKRVRDFADVNDEEIITEKRANEALNS 253 (338)
T ss_dssp T-CHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHH
T ss_pred c-CHHHHHHHHHHHHHHHHhhcCCccCHHHHHHHHHH
Confidence 5 78899998876654444444578999999988865
No 29
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.88 E-value=2.8e-25 Score=249.85 Aligned_cols=218 Identities=25% Similarity=0.405 Sum_probs=170.9
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhch-----hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANT-----KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~-----~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~ 306 (512)
..+...|++++|.+.+++.+..++...... .....|+.++||+||||||||++|+++|..++.+++.++++++..
T Consensus 470 ~~~~v~~~di~gl~~vk~~l~~~v~~~~~~~~~~~~~~~~~~~~vLL~GppGtGKT~Lakala~~~~~~~i~v~~~~l~~ 549 (806)
T 1ypw_A 470 EVPQVTWEDIGGLEDVKRELQELVQYPVEHPDKFLKFGMTPSKGVLFYGPPGCGKTLLAKAIANECQANFISIKGPELLT 549 (806)
T ss_dssp CCCCCSSCSSSCCCCHHHHHHTTTTSSSSSCTTTTCCCCCCCCCCCCBCCTTSSHHHHHHHHHHHHTCCCCCCCCSSSTT
T ss_pred cCccccccccccchhhhhhHHHHHHhhhhchHHHHhcCCCCCceeEEECCCCCCHHHHHHHHHHHhCCCEEEEechHhhh
Confidence 345667999999999999997755322111 112246678999999999999999999999999999999998765
Q ss_pred -CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC--CCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCC
Q 010366 307 -LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY--MSEAQRSALNALLFRTG--DQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 -~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~--~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~ 381 (512)
+.+.....+..+|..+.... |+||||||+|.++..+.... .......+++.||..++ ....+++||+|||.++.
T Consensus 550 ~~~g~~~~~i~~~f~~a~~~~-p~vl~iDEid~l~~~r~~~~~~~~~~~~~v~~~LL~~ld~~~~~~~v~vI~tTN~~~~ 628 (806)
T 1ypw_A 550 MWFGESEANVREIFDKARQAA-PCVLFFDELDSIAKARGGNIGDGGGAADRVINQILTEMDGMSTKKNVFIIGATNRPDI 628 (806)
T ss_dssp CCTTTSSHHHHHHHHHHHHHC-SBCCCCSSHHHHCCTTTTCCSHHHHHHHHHHHHHHTTCC------CCBCCCCCBSCGG
T ss_pred hhcCccHHHHHHHHHHHHhcC-CeEEEEEChhhhhhhccCCCCCcchhHHHHHHHHHHHHhcccccCCeEEEEecCCccc
Confidence 55667788899999998876 79999999999988775432 13456778899998886 34567899999999999
Q ss_pred CCHHHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCc
Q 010366 382 LDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFS 459 (512)
Q Consensus 382 l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s 459 (512)
+|+++++ ||+..|+|++|+.++|..|++.++..... ..+..+..++..+.|||
T Consensus 629 ld~allrpgRf~~~i~~~~p~~~~r~~Il~~~l~~~~~-------------------------~~~~~l~~la~~t~g~s 683 (806)
T 1ypw_A 629 IDPAILRPGRLDQLIYIPLPDEKSRVAILKANLRKSPV-------------------------AKDVDLEFLAKMTNGFS 683 (806)
T ss_dssp GSCTTSSGGGTTSCCCCCCCCCSHHHHHTTTTTSCC-----------------------------CCCCSCSCGGGSSSC
T ss_pred CCHHHhCccccCceeecCCCCHHHHHHHHHHHhccCCC-------------------------CcccCHHHHHHhccccC
Confidence 9999999 99999999999999999999988765321 11223566788899999
Q ss_pred HHHHHHHHHHHHHHHh
Q 010366 460 GREIAKLMASVQAAVY 475 (512)
Q Consensus 460 ~~dI~~lv~~~~aa~~ 475 (512)
++||..+|..+...+.
T Consensus 684 gadi~~l~~~a~~~a~ 699 (806)
T 1ypw_A 684 GADLTEICQRACKLAI 699 (806)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 9999999965554443
No 30
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=99.88 E-value=1.2e-21 Score=201.07 Aligned_cols=222 Identities=13% Similarity=0.161 Sum_probs=162.1
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC--CeEEEeCCCCCCCc--
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL--DYALMTGGDVAPLG-- 308 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~--~~~~v~~~~~~~~~-- 308 (512)
.|...|++++|++.++..+..+....... ..|++++||+||||||||++|+++|..++. +++.+++..+....
T Consensus 38 ~p~~~~~~ivG~~~~~~~l~~l~~~~~~~---~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~~~ 114 (368)
T 3uk6_A 38 EPRQASQGMVGQLAARRAAGVVLEMIREG---KIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIAGSEIFSLEMS 114 (368)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHTT---CCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEEGGGGSCSSSC
T ss_pred CcCcchhhccChHHHHHHHHHHHHHHHcC---CCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCcccccchhhhhcccc
Confidence 34445999999999999887776655432 234578999999999999999999999974 78888865532211
Q ss_pred ------------------------------------------------hhHHHHHHHHHHHHHh----cCC----CcEEE
Q 010366 309 ------------------------------------------------PQAVTKIHQLFDWAKK----SKR----GLLLF 332 (512)
Q Consensus 309 ------------------------------------------------~~~~~~l~~lf~~a~~----~~~----~~vl~ 332 (512)
+.....+...+..+.. ... |+|||
T Consensus 115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ld~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~g~~~~~~~vl~ 194 (368)
T 3uk6_A 115 KTEALTQAFRRSIGVRIKAGAVHTVSLHEIDVINSRTQGFLALFSGDTGEIKSEVREQINAKVAEWREEGKAEIIPGVLF 194 (368)
T ss_dssp HHHHHHHHHHHSBEECC------CEEHHHHHHHTC----CCSCC-------CHHHHHHHHHHHHHHHHHTC---CBCEEE
T ss_pred hhHHHHHHHHHHHHHHhhhhccccccHhhhhhhhcccccchhhccCcccccHHHHHHHHHHHHHHhhhhccccccCceEE
Confidence 1112233344433322 111 47999
Q ss_pred EccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee-----------CCCCCCCHHHHccccceeecCCCCH
Q 010366 333 IDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT-----------NRPGDLDSAVADRIDEVLEFPLPGQ 401 (512)
Q Consensus 333 lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt-----------N~~~~l~~al~~R~~~~i~~~~p~~ 401 (512)
|||+|.+. ...++.|+..+++...+++++++. |.+..+++++++||. .+.|++|+.
T Consensus 195 IDEi~~l~------------~~~~~~L~~~le~~~~~~~ii~t~~~~~~i~~t~~~~~~~l~~~l~sR~~-~i~~~~~~~ 261 (368)
T 3uk6_A 195 IDEVHMLD------------IESFSFLNRALESDMAPVLIMATNRGITRIRGTSYQSPHGIPIDLLDRLL-IVSTTPYSE 261 (368)
T ss_dssp EESGGGSB------------HHHHHHHHHHTTCTTCCEEEEEESCSEEECBTSSCEEETTCCHHHHTTEE-EEEECCCCH
T ss_pred EhhccccC------------hHHHHHHHHHhhCcCCCeeeeecccceeeeeccCCCCcccCCHHHHhhcc-EEEecCCCH
Confidence 99999972 234556666666666666655554 347789999999994 589999999
Q ss_pred HHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCc
Q 010366 402 EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCV 481 (512)
Q Consensus 402 ~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~ 481 (512)
+++..|++..+..... .++++.+..++..+.+.+++++..++..+...+...+...
T Consensus 262 ~e~~~il~~~~~~~~~------------------------~~~~~~l~~l~~~~~~G~~r~~~~ll~~a~~~A~~~~~~~ 317 (368)
T 3uk6_A 262 KDTKQILRIRCEEEDV------------------------EMSEDAYTVLTRIGLETSLRYAIQLITAASLVCRKRKGTE 317 (368)
T ss_dssp HHHHHHHHHHHHHTTC------------------------CBCHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCSS
T ss_pred HHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHHHhCCCC
Confidence 9999999988765321 2889999999999985699999999977666655556689
Q ss_pred cCHHHHHHHHHHH
Q 010366 482 LDPSLFREVVDYK 494 (512)
Q Consensus 482 it~e~~~~al~~~ 494 (512)
||.+++.++++..
T Consensus 318 It~~~v~~a~~~~ 330 (368)
T 3uk6_A 318 VQVDDIKRVYSLF 330 (368)
T ss_dssp BCHHHHHHHHHHS
T ss_pred CCHHHHHHHHHHh
Confidence 9999999999863
No 31
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=99.87 E-value=2.9e-22 Score=199.87 Aligned_cols=174 Identities=15% Similarity=0.208 Sum_probs=113.3
Q ss_pred CCccccChHHHHHHHH-HHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-CchhHHHHH
Q 010366 238 FGDVILHPSLQKRIRQ-LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP-LGPQAVTKI 315 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~-~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~-~~~~~~~~l 315 (512)
+.++...+...+.+.. ++..... .....+|.++|||||||||||++|+++|+.++.+++.++++++.. +.+.....+
T Consensus 6 ~~~~y~~~~~~~~~~~~~~k~~l~-~~~~~~p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~~~l~~~~~g~~~~~i 84 (293)
T 3t15_A 6 LDGFYIAPAFMDKLVVHITKNFLK-LPNIKVPLILGIWGGKGQGKSFQCELVFRKMGINPIMMSAGELESGNAGEPAKLI 84 (293)
T ss_dssp ETTEECCHHHHHHHHHHHHHTTSC-CTTCCCCSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEHHHHHCC---HHHHHH
T ss_pred cCcccCCHHHHHHHHHHHHHHHHh-cCCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeHHHhhhccCchhHHHH
Confidence 3445555555554422 2221111 122355679999999999999999999999999999999887644 556677788
Q ss_pred HHHHHHHH---hcCCCcEEEEccchhhhhhcccCCC-CHHHHHHHHHHHHHcC-------------CCCCCEEEEEeeCC
Q 010366 316 HQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYM-SEAQRSALNALLFRTG-------------DQSKDIVLALATNR 378 (512)
Q Consensus 316 ~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~-~~~~~~~l~~ll~~~~-------------~~~~~viiI~ttN~ 378 (512)
..+|..+. +...|+||||||||++++....... ....+.+.+.|++.++ ....+++||+|||.
T Consensus 85 ~~~f~~a~~~~~~~~~~vl~iDEiD~~~~~~~~~~~~~~~~~~v~~~Ll~~ld~~~~~~~~~~~~~~~~~~v~vI~ttN~ 164 (293)
T 3t15_A 85 RQRYREAAEIIRKGNMCCLFINDLDAGAGRMGGTTQYTVNNQMVNATLMNIADNPTNVQLPGMYNKQENARVPIIVTGND 164 (293)
T ss_dssp HHHHHHHHHHHTTSSCCCEEEECCC--------------CHHHHHHHHHHHHHCCC-----------CCCCCCEEEECSS
T ss_pred HHHHHHHHHHHhcCCCeEEEEechhhhcCCCCCCccccchHHHHHHHHHHHhccccccccccccccccCCCcEEEEecCC
Confidence 88898883 2345899999999999875543221 1122234444444432 13457999999999
Q ss_pred CCCCCHHHHc--cccceeecCCCCHHHHHHHHHHHHHH
Q 010366 379 PGDLDSAVAD--RIDEVLEFPLPGQEERFKLLKLYLDK 414 (512)
Q Consensus 379 ~~~l~~al~~--R~~~~i~~~~p~~~er~~Il~~~l~~ 414 (512)
++.+++++++ ||+..+. .|+.++|..|++.++..
T Consensus 165 ~~~ld~al~R~~R~d~~i~--~P~~~~r~~Il~~~~~~ 200 (293)
T 3t15_A 165 FSTLYAPLIRDGRMEKFYW--APTREDRIGVCTGIFRT 200 (293)
T ss_dssp CCC--CHHHHHHHEEEEEE--CCCHHHHHHHHHHHHGG
T ss_pred cccCCHHHhCCCCCceeEe--CcCHHHHHHHHHHhccC
Confidence 9999999996 9988786 46999999999977653
No 32
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=99.87 E-value=5.1e-22 Score=198.92 Aligned_cols=202 Identities=25% Similarity=0.292 Sum_probs=151.3
Q ss_pred CccccChHHHHHHHHHHHHhhchhh-------cCCCCcceEEecCCCCchHHHHHHHHHHhC-------CCeEEEeCCCC
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKA-------HNAPFRNMLFYGPPGTGKTMAARELARKSG-------LDYALMTGGDV 304 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~-------~~~p~~~vLL~GppGtGKT~lA~alA~~l~-------~~~~~v~~~~~ 304 (512)
.+++|++.+++.+..++........ ...+..++||+||||||||++|+++|+.++ .+++.++++++
T Consensus 31 ~~i~G~~~~~~~l~~~~~~~~~~~~~~~~g~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~~~~~~~~~~~~~l 110 (309)
T 3syl_A 31 RELIGLKPVKDRIRETAALLLVERARQKLGLAHETPTLHMSFTGNPGTGKTTVALKMAGLLHRLGYVRKGHLVSVTRDDL 110 (309)
T ss_dssp HHSSSCHHHHHHHHHHHHHHHHHHHHHHHTCCSSCCCCEEEEEECTTSSHHHHHHHHHHHHHHTTSSSSCCEEEECGGGT
T ss_pred HHccChHHHHHHHHHHHHHHHhHHHHHHcCCCCCCCCceEEEECCCCCCHHHHHHHHHHHHHhcCCcCCCcEEEEcHHHh
Confidence 3799999999999887765432211 134556899999999999999999999873 48999998887
Q ss_pred CC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC---
Q 010366 305 AP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG--- 380 (512)
Q Consensus 305 ~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~--- 380 (512)
.. +.+.....+..+|..+. ++||||||+|.++..+.....+ ...++.|+..++....+++||++||.+.
T Consensus 111 ~~~~~g~~~~~~~~~~~~~~----~~vl~iDEid~l~~~~~~~~~~---~~~~~~Ll~~l~~~~~~~~~i~~~~~~~~~~ 183 (309)
T 3syl_A 111 VGQYIGHTAPKTKEVLKRAM----GGVLFIDEAYYLYRPDNERDYG---QEAIEILLQVMENNRDDLVVILAGYADRMEN 183 (309)
T ss_dssp CCSSTTCHHHHHHHHHHHHT----TSEEEEETGGGSCCCC---CCT---HHHHHHHHHHHHHCTTTCEEEEEECHHHHHH
T ss_pred hhhcccccHHHHHHHHHhcC----CCEEEEEChhhhccCCCccccc---HHHHHHHHHHHhcCCCCEEEEEeCChHHHHH
Confidence 55 44455566677777663 6899999999997655433323 3455556665555667889999998653
Q ss_pred --CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH----
Q 010366 381 --DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK---- 454 (512)
Q Consensus 381 --~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~---- 454 (512)
.++|++.+||+.++.|++|+.+++..|++.++..... .++++.+..++..
T Consensus 184 ~~~~~~~l~~R~~~~i~~~~~~~~~~~~il~~~l~~~~~------------------------~~~~~~~~~l~~~~~~~ 239 (309)
T 3syl_A 184 FFQSNPGFRSRIAHHIEFPDYSDEELFEIAGHMLDDQNY------------------------QMTPEAETALRAYIGLR 239 (309)
T ss_dssp HHHHSTTHHHHEEEEEEECCCCHHHHHHHHHHHHHHTTC------------------------EECHHHHHHHHHHHHHH
T ss_pred HHhhCHHHHHhCCeEEEcCCcCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHHHHh
Confidence 3579999999999999999999999999999876432 2788888888876
Q ss_pred ---cCCCcHHHHHHHHHHHH
Q 010366 455 ---TEGFSGREIAKLMASVQ 471 (512)
Q Consensus 455 ---t~g~s~~dI~~lv~~~~ 471 (512)
....+++++..++..+.
T Consensus 240 ~~~~~~gn~r~l~~~l~~a~ 259 (309)
T 3syl_A 240 RNQPHFANARSIRNALDRAR 259 (309)
T ss_dssp TTSSSCCHHHHHHHHHHHHH
T ss_pred ccCCCCCcHHHHHHHHHHHH
Confidence 34456899999885443
No 33
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=99.87 E-value=9.3e-21 Score=190.90 Aligned_cols=217 Identities=20% Similarity=0.264 Sum_probs=163.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhH
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQA 311 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~ 311 (512)
.+.+.+|++++|.+..+..+...+..... .+.++.++||+||||||||++|+++++.++.+++.++++.+..
T Consensus 5 ~~~p~~~~~~ig~~~~~~~l~~~l~~~~~---~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~----- 76 (324)
T 1hqc_A 5 ALRPKTLDEYIGQERLKQKLRVYLEAAKA---RKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVTSGPAIEK----- 76 (324)
T ss_dssp CCCCCSTTTCCSCHHHHHHHHHHHHHHHH---HCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEECTTTCCS-----
T ss_pred ccCcccHHHhhCHHHHHHHHHHHHHHHHc---cCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEEeccccCC-----
Confidence 34566799999999999998776654432 2234467999999999999999999999999999999887643
Q ss_pred HHHHHHHHHHHHh-cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC------C---------CCCCEEEEEe
Q 010366 312 VTKIHQLFDWAKK-SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------D---------QSKDIVLALA 375 (512)
Q Consensus 312 ~~~l~~lf~~a~~-~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------~---------~~~~viiI~t 375 (512)
... ++..... ...+++|||||++.+ +......+..++.... . ...++++|++
T Consensus 77 ~~~---l~~~l~~~~~~~~~l~lDEi~~l---------~~~~~~~L~~~l~~~~~~~v~~~~~~~~~~~~~~~~~~~i~~ 144 (324)
T 1hqc_A 77 PGD---LAAILANSLEEGDILFIDEIHRL---------SRQAEEHLYPAMEDFVMDIVIGQGPAARTIRLELPRFTLIGA 144 (324)
T ss_dssp HHH---HHHHHTTTCCTTCEEEETTTTSC---------CHHHHHHHHHHHHHSEEEECCSSSSSCCCEEEECCCCEEEEE
T ss_pred hHH---HHHHHHHhccCCCEEEEECCccc---------ccchHHHHHHHHHhhhhHHhccccccccccccCCCCEEEEEe
Confidence 122 2222222 345789999999987 3344555555655431 0 1135789999
Q ss_pred eCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc
Q 010366 376 TNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT 455 (512)
Q Consensus 376 tN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t 455 (512)
||.+..+++++.+||+.++.|++|+.+++..++..++..... .++++.+..++..+
T Consensus 145 t~~~~~~~~~l~~R~~~~i~l~~~~~~e~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~ 200 (324)
T 1hqc_A 145 TTRPGLITAPLLSRFGIVEHLEYYTPEELAQGVMRDARLLGV------------------------RITEEAALEIGRRS 200 (324)
T ss_dssp ESCCSSCSCSTTTTCSCEEECCCCCHHHHHHHHHHHHHTTTC------------------------CCCHHHHHHHHHHS
T ss_pred CCCcccCCHHHHhcccEEEecCCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHc
Confidence 999999999999999889999999999999999888764321 27889999999998
Q ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 456 EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 456 ~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
.| +++++..++..+...+.......|+.+++..++..
T Consensus 201 ~G-~~r~l~~~l~~~~~~a~~~~~~~i~~~~~~~~~~~ 237 (324)
T 1hqc_A 201 RG-TMRVAKRLFRRVRDFAQVAGEEVITRERALEALAA 237 (324)
T ss_dssp CS-CHHHHHHHHHHHTTTSTTTSCSCCCHHHHHHHHHH
T ss_pred cC-CHHHHHHHHHHHHHHHHHhcCCCCCHHHHHHHHHH
Confidence 66 68899888876655544444568999999887754
No 34
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=99.86 E-value=4.8e-21 Score=202.67 Aligned_cols=231 Identities=15% Similarity=0.173 Sum_probs=174.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC--CCeEEEeCCCCCC-Cch
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAP-LGP 309 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~~~~~~~-~~~ 309 (512)
.+...|++++|++++++.+..++..... +..|++++||+||||||||++|+++|+.++ .+|+.++++++.. +.+
T Consensus 31 ~~~~~~~~iiG~~~~~~~l~~~~~~~~~---~~~~~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~~~~~~~~~~ 107 (456)
T 2c9o_A 31 LAKQAASGLVGQENAREACGVIVELIKS---KKMAGRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVGSEVYSTEIK 107 (456)
T ss_dssp CBCSEETTEESCHHHHHHHHHHHHHHHT---TCCTTCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEGGGGCCSSSC
T ss_pred ChhhchhhccCHHHHHHHHHHHHHHHHh---CCCCCCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeHHHHHHHhhh
Confidence 3445589999999999999877765432 334668999999999999999999999999 9999999998876 444
Q ss_pred hHHHHHHHHHHHH---HhcCCCcEEEEccchhhhhhcccCC---------------------------------------
Q 010366 310 QAVTKIHQLFDWA---KKSKRGLLLFIDEADAFLCERNKTY--------------------------------------- 347 (512)
Q Consensus 310 ~~~~~l~~lf~~a---~~~~~~~vl~lDEid~l~~~~~~~~--------------------------------------- 347 (512)
.+.. +...|..+ ... .|+||||||+|.+++.+....
T Consensus 108 ~~~~-~~~~f~~a~~~~~~-~~~il~iDEid~l~~~r~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ll~~l~~~~~ 185 (456)
T 2c9o_A 108 KTEV-LMENFRRAIGLRIK-ETKEVYEGEVTELTPCETENPMGGYGKTISHVIIGLKTAKGTKQLKLDPSIFESLQKERV 185 (456)
T ss_dssp HHHH-HHHHHHHTEEEEEE-EEEEEEEEEEEEEEEC--------------CEEEEEEETTEEEEEEECHHHHHHHHHTTC
T ss_pred hhHH-HHHHHHHHHhhhhc-CCcEEEEechhhcccccCCCCCCCcchHHHHHHHHHhccccchhHhhhHHHHHHHhhccC
Confidence 4444 88889887 333 479999999998875432110
Q ss_pred -------------------------------------CC-H---------------------------------------
Q 010366 348 -------------------------------------MS-E--------------------------------------- 350 (512)
Q Consensus 348 -------------------------------------~~-~--------------------------------------- 350 (512)
.+ .
T Consensus 186 ~~~~~v~i~attn~~~~ld~a~~r~~rfd~~~~~~v~~p~~~~~~R~~il~~~~~~dl~~~a~~t~ggadl~~l~~~i~~ 265 (456)
T 2c9o_A 186 EAGDVIYIEANSGAVKRQGRCDTYATEFDLEAEEYVPLPKGDVHKKKEIIQDVTLHDLDVANARPQGGQDILSMMGQLMK 265 (456)
T ss_dssp CTTEEEEEETTTCCEEEEEEETTSCCTTSCSSSSEECCCCSCSEEEEEEEEEEEHHHHHHTC------------------
T ss_pred CCCCEEEEEcCCCCcccCChhhcCCcccCcceeEecCCCchhHHHHHHHHHHHHHHHHHHHHHhCCChhHHHHHHhhhcc
Confidence 00 0
Q ss_pred -----------------------------------------HHHHHHHHHHHHcCCCCCCEEEEEeeCC-----------
Q 010366 351 -----------------------------------------AQRSALNALLFRTGDQSKDIVLALATNR----------- 378 (512)
Q Consensus 351 -----------------------------------------~~~~~l~~ll~~~~~~~~~viiI~ttN~----------- 378 (512)
-....++.|+..+++++.++ ||++||.
T Consensus 266 p~~~~I~~~lr~~I~~~l~~~~~~g~~~v~~~VliIDEa~~l~~~a~~aLlk~lEe~~~~~-~il~tn~~~~~i~~~~~~ 344 (456)
T 2c9o_A 266 PKKTEITDKLRGEINKVVNKYIDQGIAELVPGVLFVDEVHMLDIECFTYLHRALESSIAPI-VIFASNRGNCVIRGTEDI 344 (456)
T ss_dssp -----------CHHHHHHHHHHHTTSEEEEECEEEEESGGGCBHHHHHHHHHHTTSTTCCE-EEEEECCSEEECBTTSSC
T ss_pred cchhhHHHHHHHHHHHHHHHHHHhccccccceEEEEechhhcCHHHHHHHHHHhhccCCCE-EEEecCCccccccccccc
Confidence 00135667777777777774 5555533
Q ss_pred --CCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc-
Q 010366 379 --PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT- 455 (512)
Q Consensus 379 --~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t- 455 (512)
+..++|.+++|| ..+.|++|+.++...+++..+..... .++++.+..++..+
T Consensus 345 ~~~~~l~~~i~sR~-~~~~~~~~~~~e~~~iL~~~~~~~~~------------------------~~~~~~~~~i~~~a~ 399 (456)
T 2c9o_A 345 TSPHGIPLDLLDRV-MIIRTMLYTPQEMKQIIKIRAQTEGI------------------------NISEEALNHLGEIGT 399 (456)
T ss_dssp EEETTCCHHHHTTE-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CBCHHHHHHHHHHHH
T ss_pred cccccCChhHHhhc-ceeeCCCCCHHHHHHHHHHHHHHhCC------------------------CCCHHHHHHHHHHcc
Confidence 778999999999 45799999999999999988764321 27899999999888
Q ss_pred CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 456 EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 456 ~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
.| +++....++..+...+...+...||.+++.+++..+.
T Consensus 400 ~g-~~r~a~~ll~~a~~~A~~~~~~~v~~~~v~~~~~~~~ 438 (456)
T 2c9o_A 400 KT-TLRYSVQLLTPANLLAKINGKDSIEKEHVEEISELFY 438 (456)
T ss_dssp HS-CHHHHHHTHHHHHHHHHHTTCSSBCHHHHHHHHHHSC
T ss_pred CC-CHHHHHHHHHHHHHHHhhcCCCccCHHHHHHHHHHhc
Confidence 65 8888888887776666656668999999999997754
No 35
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=99.86 E-value=3.5e-21 Score=192.45 Aligned_cols=240 Identities=19% Similarity=0.261 Sum_probs=158.4
Q ss_pred CccccChHHHHHHHHHHHHh-hc-----hhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC---ch
Q 010366 239 GDVILHPSLQKRIRQLSGAT-AN-----TKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL---GP 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~-~~-----~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~---~~ 309 (512)
++++|++.++..+...+... .. ....+.++.++||+||||||||++|+++|+.++.+++.++++.+... +.
T Consensus 15 ~~i~G~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~~~~~~~~~~~~ 94 (310)
T 1ofh_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (310)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHTTSSCHHHHHHCCCCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEGGGGSSCCSGGG
T ss_pred hhcCChHHHHHHHHHHHHHHHhhhhhcccccccCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcchhcccCCccCc
Confidence 67999999999997655431 10 00112345689999999999999999999999999999999887542 11
Q ss_pred hHHHHHHHHHHHH----HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC----------CCCCEEEEEe
Q 010366 310 QAVTKIHQLFDWA----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALA 375 (512)
Q Consensus 310 ~~~~~l~~lf~~a----~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~viiI~t 375 (512)
.....+..++..+ ....+++||||||+|.+...............+.+.|+..++. ...+++||++
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~~i~~ 174 (310)
T 1ofh_A 95 EVDSIIRDLTDSAGGAIDAVEQNGIVFIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIAS 174 (310)
T ss_dssp STTHHHHHHHHTTTTCHHHHHHHCEEEEECGGGGSCCSSCCSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEE
T ss_pred cHHHHHHHHHHHhhHHHhhccCCCEEEEEChhhcCccccccccchhHHHHHHHHHHHhcCCeEecccccccCCcEEEEEc
Confidence 2223344554421 1111267999999999976654332222222234555554432 2346888888
Q ss_pred e----CCCCCCCHHHHccccceeecCCCCHHHHHHHHHHH----HHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHH
Q 010366 376 T----NRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLY----LDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDI 447 (512)
Q Consensus 376 t----N~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~----l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 447 (512)
+ +.+..+++++.+||+..+.|++|+.+++..|++.. +..+.. .+... +.. ..+++++
T Consensus 175 ~~~~~~~~~~l~~~l~~R~~~~i~~~~~~~~~~~~il~~~~~~~~~~~~~------------~~~~~--~~~-~~~~~~a 239 (310)
T 1ofh_A 175 GAFQVARPSDLIPELQGRLPIRVELTALSAADFERILTEPHASLTEQYKA------------LMATE--GVN-IAFTTDA 239 (310)
T ss_dssp ECCSSSCGGGSCHHHHHTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHH------------HHHHT--TCE-EEECHHH
T ss_pred CCcccCCcccCCHHHHhhCCceEEcCCcCHHHHHHHHHhhHHHHHHHHHH------------HHHhc--CCe-eccCHHH
Confidence 4 56788999999999988999999999999999842 222110 00000 000 1378999
Q ss_pred HHHHHHHcC-------CCcHHHHHHHHHHHHH-----HHhCCCC-CccCHHHHHHHHHH
Q 010366 448 LMEAAAKTE-------GFSGREIAKLMASVQA-----AVYGSEN-CVLDPSLFREVVDY 493 (512)
Q Consensus 448 l~~la~~t~-------g~s~~dI~~lv~~~~a-----a~~~~~~-~~it~e~~~~al~~ 493 (512)
++.|+..+. +.++|++..++..+.. .....+. ..||.+++.+++..
T Consensus 240 ~~~l~~~~~~~~~~~~~g~~R~l~~~l~~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~ 298 (310)
T 1ofh_A 240 VKKIAEAAFRVNEKTENIGARRLHTVMERLMDKISFSASDMNGQTVNIDAAYVADALGE 298 (310)
T ss_dssp HHHHHHHHHHHHHHSCCCTTHHHHHHHHHHSHHHHHHGGGCTTCEEEECHHHHHHHTCS
T ss_pred HHHHHHHhhhhcccccccCcHHHHHHHHHHHHhhhcCCccccCCEEEEeeHHHHHHHHh
Confidence 999999873 4688999998854431 1111222 25999999998864
No 36
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.85 E-value=1.5e-20 Score=210.96 Aligned_cols=203 Identities=16% Similarity=0.206 Sum_probs=146.7
Q ss_pred CCccccChHHHHHHHHHHHHhh-chhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHH
Q 010366 238 FGDVILHPSLQKRIRQLSGATA-NTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVT 313 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~-~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~ 313 (512)
.++++|++.++..+...+.... ....++.|..++||+||||||||++|+++|..+ +.+++.++|+.+.........
T Consensus 490 ~~~viGq~~a~~~l~~~i~~~~~~~~~~~~p~~~~Ll~Gp~GtGKT~lA~ala~~l~~~~~~~i~i~~s~~~~~~~~~~~ 569 (758)
T 3pxi_A 490 HSRVIGQDEAVVAVAKAVRRARAGLKDPKRPIGSFIFLGPTGVGKTELARALAESIFGDEESMIRIDMSEYMEKHSTSGG 569 (758)
T ss_dssp HTTSCSCHHHHHHHHHHHHHHTTTCSCTTSCSEEEEEESCTTSSHHHHHHHHHHHHHSCTTCEEEEEGGGGCSSCCCC--
T ss_pred hCcCcChHHHHHHHHHHHHHHHcccCCCCCCceEEEEECCCCCCHHHHHHHHHHHhcCCCcceEEEechhcccccccccc
Confidence 3789999999999977665443 333345566689999999999999999999997 688999999988763322211
Q ss_pred HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCCCC----
Q 010366 314 KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRPGD---- 381 (512)
Q Consensus 314 ~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~~~---- 381 (512)
.+..+.+..+++||||||||.+ +......|..+++.-. ....+++||+|||.+..
T Consensus 570 ----~l~~~~~~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~g~~~~~~g~~~~~~~~~iI~ttn~~~~~~~~ 636 (758)
T 3pxi_A 570 ----QLTEKVRRKPYSVVLLDAIEKA---------HPDVFNILLQVLEDGRLTDSKGRTVDFRNTILIMTSNVGASEKDK 636 (758)
T ss_dssp -----CHHHHHHCSSSEEEEECGGGS---------CHHHHHHHHHHHHHSBCC-----CCBCTTCEEEEEESSSTTCCHH
T ss_pred ----hhhHHHHhCCCeEEEEeCcccc---------CHHHHHHHHHHhccCeEEcCCCCEeccCCeEEEEeCCCChhhHHH
Confidence 2222333456899999999986 4455556666665421 14467899999997654
Q ss_pred --------CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHH
Q 010366 382 --------LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAA 453 (512)
Q Consensus 382 --------l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~ 453 (512)
+.|+|++||+.+|.|++|+.+++..|+..++..+..... .. +.. ..+++++++.|+.
T Consensus 637 ~~~~~~~~f~p~l~~Rl~~~i~~~~l~~~~~~~i~~~~l~~~~~~~~------------~~--~~~-~~~~~~a~~~l~~ 701 (758)
T 3pxi_A 637 VMGELKRAFRPEFINRIDEIIVFHSLEKKHLTEIVSLMSDQLTKRLK------------EQ--DLS-IELTDAAKAKVAE 701 (758)
T ss_dssp HHHHHHHHSCHHHHTTSSEEEECC--CHHHHHHHHHHHHHHHHHHHH------------TT--TCE-EEECHHHHHHHHG
T ss_pred HHHHHHhhCCHHHHhhCCeEEecCCCCHHHHHHHHHHHHHHHHHHHH------------hC--CCe-EEECHHHHHHHHH
Confidence 899999999999999999999999999999887543211 10 111 2389999999987
Q ss_pred H--cCCCcHHHHHHHHH
Q 010366 454 K--TEGFSGREIAKLMA 468 (512)
Q Consensus 454 ~--t~g~s~~dI~~lv~ 468 (512)
. ...+..|+|..++.
T Consensus 702 ~~~~~~~~~R~L~~~i~ 718 (758)
T 3pxi_A 702 EGVDLEYGARPLRRAIQ 718 (758)
T ss_dssp GGCCTTTTTTTHHHHHH
T ss_pred hCCCCCCCChHHHHHHH
Confidence 4 45567788888874
No 37
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=99.84 E-value=2.5e-20 Score=188.19 Aligned_cols=214 Identities=17% Similarity=0.272 Sum_probs=145.9
Q ss_pred hccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchh
Q 010366 231 ASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQ 310 (512)
Q Consensus 231 ~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~ 310 (512)
.++.+.+|++++|+++++..+...+. .+.++..+|++||||||||++|+++|+.++.+++++++++..
T Consensus 18 ~k~rP~~~~~ivg~~~~~~~l~~~l~-------~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~~~----- 85 (324)
T 3u61_B 18 QKYRPSTIDECILPAFDKETFKSITS-------KGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSDCK----- 85 (324)
T ss_dssp HHSCCCSTTTSCCCHHHHHHHHHHHH-------TTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTTCC-----
T ss_pred HhhCCCCHHHHhCcHHHHHHHHHHHH-------cCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccccC-----
Confidence 35778889999999999988877664 234445688899999999999999999999999999987643
Q ss_pred HHHHHHHHHHHHHhc----CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHH
Q 010366 311 AVTKIHQLFDWAKKS----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAV 386 (512)
Q Consensus 311 ~~~~l~~lf~~a~~~----~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al 386 (512)
...+...+...... ..+.||||||+|.+.+ ......|..++.. ...++.||+|||.+..+++++
T Consensus 86 -~~~i~~~~~~~~~~~~~~~~~~vliiDEi~~l~~--------~~~~~~L~~~le~---~~~~~~iI~~~n~~~~l~~~l 153 (324)
T 3u61_B 86 -IDFVRGPLTNFASAASFDGRQKVIVIDEFDRSGL--------AESQRHLRSFMEA---YSSNCSIIITANNIDGIIKPL 153 (324)
T ss_dssp -HHHHHTHHHHHHHBCCCSSCEEEEEEESCCCGGG--------HHHHHHHHHHHHH---HGGGCEEEEEESSGGGSCTTH
T ss_pred -HHHHHHHHHHHHhhcccCCCCeEEEEECCcccCc--------HHHHHHHHHHHHh---CCCCcEEEEEeCCccccCHHH
Confidence 23333333332222 1468999999999731 2334445555443 346788999999999999999
Q ss_pred HccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCH-HHHHHHHHHcCCCcHHHHHH
Q 010366 387 ADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTD-DILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 387 ~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~l~~la~~t~g~s~~dI~~ 465 (512)
.+|| .++.|++|+.+++..|+..++...... .. ..++ .+++ +.+..++..+.| +++.
T Consensus 154 ~sR~-~~i~~~~~~~~e~~~il~~~~~~l~~~------------~~--~~~~---~~~~~~~~~~l~~~~~g----d~R~ 211 (324)
T 3u61_B 154 QSRC-RVITFGQPTDEDKIEMMKQMIRRLTEI------------CK--HEGI---AIADMKVVAALVKKNFP----DFRK 211 (324)
T ss_dssp HHHS-EEEECCCCCHHHHHHHHHHHHHHHHHH------------HH--HHTC---CBSCHHHHHHHHHHTCS----CTTH
T ss_pred HhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHH------------HH--HcCC---CCCcHHHHHHHHHhCCC----CHHH
Confidence 9999 689999999999998888776554211 00 1111 2666 899999998766 3344
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 466 LMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 466 lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
+++.++.++ . ...||.+++..++..
T Consensus 212 a~~~L~~~~-~--~~~i~~~~v~~~~~~ 236 (324)
T 3u61_B 212 TIGELDSYS-S--KGVLDAGILSLVTND 236 (324)
T ss_dssp HHHHHHHHG-G--GTCBCC---------
T ss_pred HHHHHHHHh-c--cCCCCHHHHHHHhCC
Confidence 444445544 2 245888887776544
No 38
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=99.83 E-value=2.5e-20 Score=209.69 Aligned_cols=211 Identities=29% Similarity=0.465 Sum_probs=167.9
Q ss_pred cCCCCCCccccChHHHHHHHHHHHH-hhchhh----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC-
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGA-TANTKA----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP- 306 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~-~~~~~~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~- 306 (512)
.+..+|++|+|.+..++.+...+.. ...+.. ...++.++||+||||||||++|+++|..++.+++.+++.++..
T Consensus 198 ~~~v~~~di~G~~~~~~~l~e~i~~~l~~~~~~~~l~i~~~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~~~~l~~~ 277 (806)
T 1ypw_A 198 LNEVGYDDVGGCRKQLAQIKEMVELPLRHPALFKAIGVKPPRGILLYGPPGTGKTLIARAVANETGAFFFLINGPEIMSK 277 (806)
T ss_dssp SSSCCGGGCCSCSGGGGHHHHHHHHHHHCGGGGTSSCCCCCCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEEHHHHSSS
T ss_pred cCCCCHHHhCChHHHHHHHHHHHHHHhhCHHHHHhcCCCCCCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEEchHhhhh
Confidence 4567899999999999999887654 222221 2356678999999999999999999999999999999887654
Q ss_pred CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--CCCCCEEEEEeeCCCCCCCH
Q 010366 307 LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--DQSKDIVLALATNRPGDLDS 384 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~~~~~viiI~ttN~~~~l~~ 384 (512)
+.+.....+..+|..+.... |+++||||+|.++..+.... ......++..++..++ ....++++|+|||.++.+++
T Consensus 278 ~~g~~~~~l~~vf~~a~~~~-p~il~iDEid~l~~~~~~~~-~~~~~~~~~~Ll~ll~g~~~~~~v~vI~atn~~~~ld~ 355 (806)
T 1ypw_A 278 LAGESESNLRKAFEEAEKNA-PAIIFIDELDAIAPKREKTH-GEVERRIVSQLLTLMDGLKQRAHVIVMAATNRPNSIDP 355 (806)
T ss_dssp STTHHHHHHHHHHHHHHHHC-SEEEEEESGGGTSCTTSCCC-SHHHHHHHHHHHHHHHSSCTTSCCEEEEECSCTTTSCT
T ss_pred hhhhHHHHHHHHHHHHHhcC-CcEEEeccHHHhhhcccccc-chHHHHHHHHHHHHhhhhcccccEEEecccCCchhcCH
Confidence 45667788899999988765 79999999999987765433 3344556666666554 23457899999999999999
Q ss_pred HHHc--cccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVAD--RIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~--R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++.+ ||+..+.++.|+.++|..|++.++..... ..+..+..++..+.||++++
T Consensus 356 al~r~gRf~~~i~i~~p~~~~r~~il~~~~~~~~l-------------------------~~~~~l~~la~~t~g~~g~d 410 (806)
T 1ypw_A 356 ALRRFGRFDREVDIGIPDATGRLEILQIHTKNMKL-------------------------ADDVDLEQVANETHGHVGAD 410 (806)
T ss_dssp TTTSTTSSCEEECCCCCCHHHHHHHHHHTTTTSCC-------------------------CTTCCTHHHHHSCSSCCHHH
T ss_pred HHhcccccccccccCCCCHHHHHHHHHHHHhcCCC-------------------------cccchhHHHHHhhcCcchHH
Confidence 9998 99999999999999999999987655321 22334778999999999999
Q ss_pred HHHHHHHH
Q 010366 463 IAKLMASV 470 (512)
Q Consensus 463 I~~lv~~~ 470 (512)
+..++..+
T Consensus 411 l~~l~~ea 418 (806)
T 1ypw_A 411 LAALCSEA 418 (806)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 99998543
No 39
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=99.83 E-value=4.2e-19 Score=167.42 Aligned_cols=205 Identities=22% Similarity=0.246 Sum_probs=148.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~ 306 (512)
.+++..|++++|.+.....+...+.. . ...+++|+||||||||++++++++.+ ..+++.++++....
T Consensus 10 ~~~p~~~~~~~g~~~~~~~l~~~l~~------~--~~~~~ll~G~~G~GKT~l~~~l~~~~~~~~~~~~~~~~~~~~~~~ 81 (226)
T 2chg_A 10 KYRPRTLDEVVGQDEVIQRLKGYVER------K--NIPHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (226)
T ss_dssp HTSCSSGGGCCSCHHHHHHHHHHHHT------T--CCCCEEEECSTTSSHHHHHHHHHHHHHGGGGGGGEEEEETTCTTC
T ss_pred hcCCCCHHHHcCcHHHHHHHHHHHhC------C--CCCeEEEECCCCCCHHHHHHHHHHHHhccccccceEEeccccccC
Confidence 46677799999999999888766532 1 12359999999999999999999886 35688888765432
Q ss_pred CchhHHHHHHHHHHHHHh-----cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKK-----SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~-----~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~ 381 (512)
. ..+...+..... ...+.+|||||++.+. ......+..++.. ...++.+|++||.+..
T Consensus 82 ~-----~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~~~~~~l~~~l~~---~~~~~~~i~~~~~~~~ 144 (226)
T 2chg_A 82 I-----DVVRHKIKEFARTAPIGGAPFKIIFLDEADALT---------ADAQAALRRTMEM---YSKSCRFILSCNYVSR 144 (226)
T ss_dssp H-----HHHHHHHHHHHTSCCSTTCSCEEEEEETGGGSC---------HHHHHHHHHHHHH---TTTTEEEEEEESCGGG
T ss_pred h-----HHHHHHHHHHhcccCCCccCceEEEEeChhhcC---------HHHHHHHHHHHHh---cCCCCeEEEEeCChhh
Confidence 1 122222222221 1447899999999972 2333444444443 4567899999999999
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+++++.+||. .+.|++|+.++...++...+..... .++++.+..++..+.| +++
T Consensus 145 ~~~~l~~r~~-~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~g-~~r 198 (226)
T 2chg_A 145 IIEPIQSRCA-VFRFKPVPKEAMKKRLLEICEKEGV------------------------KITEDGLEALIYISGG-DFR 198 (226)
T ss_dssp SCHHHHTTSE-EEECCCCCHHHHHHHHHHHHHHHTC------------------------CBCHHHHHHHHHHHTT-CHH
T ss_pred cCHHHHHhCc-eeecCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CHH
Confidence 9999999995 9999999999999999988765422 2788889999988866 666
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
.+..++..+.. .. ..||.+++++++.
T Consensus 199 ~l~~~l~~~~~---~~--~~I~~~~v~~~~~ 224 (226)
T 2chg_A 199 KAINALQGAAA---IG--EVVDADTIYQITA 224 (226)
T ss_dssp HHHHHHHHHHH---TC--SCBCHHHHHHHHH
T ss_pred HHHHHHHHHHh---cC--ceecHHHHHHHhc
Confidence 66666543322 22 5899999999875
No 40
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=99.82 E-value=9.7e-20 Score=179.36 Aligned_cols=205 Identities=21% Similarity=0.272 Sum_probs=136.4
Q ss_pred CCccccChHHHHHHHH----HHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCC-C-CchhH
Q 010366 238 FGDVILHPSLQKRIRQ----LSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA-P-LGPQA 311 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~----~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~-~-~~~~~ 311 (512)
..+++|.+...+.+.. +....... ...++.++||+||||||||++|+++|..++.+++.+++++.. . .....
T Consensus 32 ~~~~i~~~~~~~~i~~~~~~l~~~l~~~--~~~~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~~~~~~~g~~~~~~ 109 (272)
T 1d2n_A 32 MNGIIKWGDPVTRVLDDGELLVQQTKNS--DRTPLVSVLLEGPPHSGKTALAAKIAEESNFPFIKICSPDKMIGFSETAK 109 (272)
T ss_dssp TTCCCCCSHHHHHHHHHHHHHHHHHHHC--SSCSEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEECGGGCTTCCHHHH
T ss_pred hcCCCCccHHHHHHHHHHHHHHHHHhcc--CCCCCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEeCHHHhcCCchHHH
Confidence 4678898887766654 23222211 234567899999999999999999999999999999876522 1 22233
Q ss_pred HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccC-CCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCH-HHHcc
Q 010366 312 VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKT-YMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDS-AVADR 389 (512)
Q Consensus 312 ~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~-~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~-al~~R 389 (512)
...+..+|..+... ++++|||||+|.+++.+... .........|..++........+++||+|||.++.+++ .+.+|
T Consensus 110 ~~~~~~~~~~~~~~-~~~vl~iDEid~l~~~~~~~~~~~~~~l~~L~~~~~~~~~~~~~~~ii~ttn~~~~l~~~~l~~r 188 (272)
T 1d2n_A 110 CQAMKKIFDDAYKS-QLSCVVVDDIERLLDYVPIGPRFSNLVLQALLVLLKKAPPQGRKLLIIGTTSRKDVLQEMEMLNA 188 (272)
T ss_dssp HHHHHHHHHHHHTS-SEEEEEECCHHHHTTCBTTTTBCCHHHHHHHHHHTTCCCSTTCEEEEEEEESCHHHHHHTTCTTT
T ss_pred HHHHHHHHHHHHhc-CCcEEEEEChhhhhccCCCChhHHHHHHHHHHHHhcCccCCCCCEEEEEecCChhhcchhhhhcc
Confidence 45677788777643 37899999999997654322 12233333333333222234557889999999988887 67889
Q ss_pred ccceeecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH-HHHHHHH
Q 010366 390 IDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG-REIAKLM 467 (512)
Q Consensus 390 ~~~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~-~dI~~lv 467 (512)
|+..+.+|+++. ++...++.. . ..++++.+..++..+.|++. .++..++
T Consensus 189 f~~~i~~p~l~~r~~i~~i~~~---~--------------------------~~~~~~~~~~l~~~~~g~~~~g~ir~l~ 239 (272)
T 1d2n_A 189 FSTTIHVPNIATGEQLLEALEL---L--------------------------GNFKDKERTTIAQQVKGKKVWIGIKKLL 239 (272)
T ss_dssp SSEEEECCCEEEHHHHHHHHHH---H--------------------------TCSCHHHHHHHHHHHTTSEEEECHHHHH
T ss_pred cceEEcCCCccHHHHHHHHHHh---c--------------------------CCCCHHHHHHHHHHhcCCCccccHHHHH
Confidence 989999987766 444444432 1 12788899999999988721 1244444
Q ss_pred HHHHHHH
Q 010366 468 ASVQAAV 474 (512)
Q Consensus 468 ~~~~aa~ 474 (512)
+.+..+.
T Consensus 240 ~~l~~a~ 246 (272)
T 1d2n_A 240 MLIEMSL 246 (272)
T ss_dssp HHHHHHT
T ss_pred HHHHHHh
Confidence 4444444
No 41
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=99.82 E-value=1e-18 Score=179.65 Aligned_cols=229 Identities=16% Similarity=0.111 Sum_probs=163.0
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---------CCCeEEEeCCCC
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGDV 304 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---------~~~~~~v~~~~~ 304 (512)
+...+++++|.+.....+...+... . .+..+.+++|+||||||||++++++++.+ +.++++++|...
T Consensus 14 ~~~~p~~~~gr~~~~~~l~~~l~~~---~-~~~~~~~vll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 89 (387)
T 2v1u_A 14 PDYVPDVLPHREAELRRLAEVLAPA---L-RGEKPSNALLYGLTGTGKTAVARLVLRRLEARASSLGVLVKPIYVNARHR 89 (387)
T ss_dssp TTCCCSCCTTCHHHHHHHHHTTGGG---T-SSCCCCCEEECBCTTSSHHHHHHHHHHHHHHHHHHHTCCEEEEEEETTTS
T ss_pred CccCCCCCCCHHHHHHHHHHHHHHH---H-cCCCCCcEEEECCCCCCHHHHHHHHHHHHHHHHhccCCCeEEEEEECCcC
Confidence 3344589999999988886654321 1 12344689999999999999999999988 788999998765
Q ss_pred CCC------------------chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCC
Q 010366 305 APL------------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 366 (512)
Q Consensus 305 ~~~------------------~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 366 (512)
... +......+..++........+++|||||+|.+.... .....+..++......
T Consensus 90 ~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDEi~~l~~~~-------~~~~~l~~l~~~~~~~ 162 (387)
T 2v1u_A 90 ETPYRVASAIAEAVGVRVPFTGLSVGEVYERLVKRLSRLRGIYIIVLDEIDFLPKRP-------GGQDLLYRITRINQEL 162 (387)
T ss_dssp CSHHHHHHHHHHHHSCCCCSSCCCHHHHHHHHHHHHTTSCSEEEEEEETTTHHHHST-------THHHHHHHHHHGGGCC
T ss_pred CCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEccHhhhcccC-------CCChHHHhHhhchhhc
Confidence 421 111222234444444444457799999999984321 1346677777766432
Q ss_pred --CCCEEEEEeeCCC---CCCCHHHHccccc-eeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhh
Q 010366 367 --SKDIVLALATNRP---GDLDSAVADRIDE-VLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 440 (512)
Q Consensus 367 --~~~viiI~ttN~~---~~l~~al~~R~~~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
..++.+|++||.+ ..+++.+.+||.. .+.|++|+.+++..|+...+......
T Consensus 163 ~~~~~~~~I~~t~~~~~~~~l~~~l~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~---------------------- 220 (387)
T 2v1u_A 163 GDRVWVSLVGITNSLGFVENLEPRVKSSLGEVELVFPPYTAPQLRDILETRAEEAFNP---------------------- 220 (387)
T ss_dssp -----CEEEEECSCSTTSSSSCHHHHTTTTSEECCBCCCCHHHHHHHHHHHHHHHBCT----------------------
T ss_pred CCCceEEEEEEECCCchHhhhCHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHHhhccC----------------------
Confidence 5678899999887 7889999999976 89999999999999999988642111
Q ss_pred cCCCHHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 010366 441 KGLTDDILMEAAAKTE---GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 441 ~~~~~~~l~~la~~t~---g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~ 496 (512)
..++++.+..++..+. | .++.+..++..+...+...+...||.+++..++.....
T Consensus 221 ~~~~~~~~~~l~~~~~~~~G-~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 278 (387)
T 2v1u_A 221 GVLDPDVVPLCAALAAREHG-DARRALDLLRVAGEIAERRREERVRREHVYSARAEIER 278 (387)
T ss_dssp TTBCSSHHHHHHHHHHSSSC-CHHHHHHHHHHHHHHHHHTTCSCBCHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHhcc-CHHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHHhh
Confidence 1267778888888886 5 67888888866655554445578999999999987643
No 42
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=99.81 E-value=5e-19 Score=186.17 Aligned_cols=215 Identities=25% Similarity=0.310 Sum_probs=151.1
Q ss_pred ccCCCCCCccccChHHH---HHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQ---KRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~---~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~ 308 (512)
...+.+|++++|+++++ ..+...+.. +.+ .++||+||||||||++|+++|+.++.+++.+++....
T Consensus 19 r~rP~~l~~ivGq~~~~~~~~~L~~~i~~-------~~~-~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~a~~~~--- 87 (447)
T 3pvs_A 19 RMRPENLAQYIGQQHLLAAGKPLPRAIEA-------GHL-HSMILWGPPGTGKTTLAEVIARYANADVERISAVTSG--- 87 (447)
T ss_dssp HTCCCSTTTCCSCHHHHSTTSHHHHHHHH-------TCC-CEEEEECSTTSSHHHHHHHHHHHTTCEEEEEETTTCC---
T ss_pred HhCCCCHHHhCCcHHHHhchHHHHHHHHc-------CCC-cEEEEECCCCCcHHHHHHHHHHHhCCCeEEEEeccCC---
Confidence 35567899999999998 555444422 111 4799999999999999999999999999999875422
Q ss_pred hhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEee--CCCCCCC
Q 010366 309 PQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALAT--NRPGDLD 383 (512)
Q Consensus 309 ~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~tt--N~~~~l~ 383 (512)
...+..++..+.. ...++||||||+|.+.. ..+. .|+..+++ ..++||++| |....++
T Consensus 88 ---~~~ir~~~~~a~~~~~~~~~~iLfIDEI~~l~~---------~~q~---~LL~~le~--~~v~lI~att~n~~~~l~ 150 (447)
T 3pvs_A 88 ---VKEIREAIERARQNRNAGRRTILFVDEVHRFNK---------SQQD---AFLPHIED--GTITFIGATTENPSFELN 150 (447)
T ss_dssp ---HHHHHHHHHHHHHHHHTTCCEEEEEETTTCC------------------CCHHHHHT--TSCEEEEEESSCGGGSSC
T ss_pred ---HHHHHHHHHHHHHhhhcCCCcEEEEeChhhhCH---------HHHH---HHHHHHhc--CceEEEecCCCCcccccC
Confidence 2344455554442 34578999999999732 2222 33433432 456777766 5556899
Q ss_pred HHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHH
Q 010366 384 SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREI 463 (512)
Q Consensus 384 ~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI 463 (512)
+++++|+ .++.|++|+.+++..++...+......... .. ..++++.++.|+..+.| +.|++
T Consensus 151 ~aL~sR~-~v~~l~~l~~edi~~il~~~l~~~~~~~~~--------------~~---~~i~~~al~~L~~~~~G-d~R~l 211 (447)
T 3pvs_A 151 SALLSRA-RVYLLKSLSTEDIEQVLTQAMEDKTRGYGG--------------QD---IVLPDETRRAIAELVNG-DARRA 211 (447)
T ss_dssp HHHHTTE-EEEECCCCCHHHHHHHHHHHHHCTTTSSTT--------------SS---EECCHHHHHHHHHHHCS-CHHHH
T ss_pred HHHhCce-eEEeeCCcCHHHHHHHHHHHHHHHhhhhcc--------------cc---CcCCHHHHHHHHHHCCC-CHHHH
Confidence 9999999 588899999999999999998753211000 00 13899999999999765 77888
Q ss_pred HHHHHHHHHHHhCC--CCCccCHHHHHHHHHH
Q 010366 464 AKLMASVQAAVYGS--ENCVLDPSLFREVVDY 493 (512)
Q Consensus 464 ~~lv~~~~aa~~~~--~~~~it~e~~~~al~~ 493 (512)
..++..+...+... +...||.+++.+++..
T Consensus 212 ln~Le~a~~~a~~~~~~~~~It~e~v~~~l~~ 243 (447)
T 3pvs_A 212 LNTLEMMADMAEVDDSGKRVLKPELLTEIAGE 243 (447)
T ss_dssp HHHHHHHHHHSCBCTTSCEECCHHHHHHHHTC
T ss_pred HHHHHHHHHhcccccCCCCccCHHHHHHHHhh
Confidence 88876555554322 3468999999998864
No 43
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=99.81 E-value=3.2e-19 Score=178.53 Aligned_cols=208 Identities=17% Similarity=0.198 Sum_probs=148.3
Q ss_pred CCccccChHHHHHHHHHHHHhh-chhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHH
Q 010366 238 FGDVILHPSLQKRIRQLSGATA-NTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVT 313 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~-~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~ 313 (512)
.++++|++.+++.+...+.... ....++.|..+++|+||||||||++|+++|..+ +.+++.++|+.+....... .
T Consensus 16 ~~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~~~~~~~~~~~~-~ 94 (311)
T 4fcw_A 16 HKRVVGQDEAIRAVADAIRRARAGLKDPNRPIGSFLFLGPTGVGKTELAKTLAATLFDTEEAMIRIDMTEYMEKHAVS-R 94 (311)
T ss_dssp HTTCCSCHHHHHHHHHHHHHHHHTCSCTTSCSEEEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEEGGGCCSTTHHH-H
T ss_pred hhhcCCHHHHHHHHHHHHHHHhcCCCCCCCCceEEEEECCCCcCHHHHHHHHHHHHcCCCcceEEeecccccccccHH-H
Confidence 3678999999999977665443 233344565689999999999999999999987 4679999988765421110 0
Q ss_pred HH-----------HHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--C------CCCCEEEEE
Q 010366 314 KI-----------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--D------QSKDIVLAL 374 (512)
Q Consensus 314 ~l-----------~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~------~~~~viiI~ 374 (512)
.+ ...+..+....++++|||||+|.+ +......|..++.... . ...+++||+
T Consensus 95 l~g~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEi~~l---------~~~~~~~Ll~~le~~~~~~~~~~~~~~~~~iiI~ 165 (311)
T 4fcw_A 95 LIGAPPGYVGYEEGGQLTEAVRRRPYSVILFDAIEKA---------HPDVFNILLQMLDDGRLTDSHGRTVDFRNTVIIM 165 (311)
T ss_dssp HHCCCTTSTTTTTCCHHHHHHHHCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEECTTSCEEECTTEEEEE
T ss_pred hcCCCCccccccccchHHHHHHhCCCeEEEEeChhhc---------CHHHHHHHHHHHhcCEEEcCCCCEEECCCcEEEE
Confidence 00 012333333455799999999997 3455555555555421 0 124788999
Q ss_pred eeCC--------------------------CCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchh
Q 010366 375 ATNR--------------------------PGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVH 428 (512)
Q Consensus 375 ttN~--------------------------~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~ 428 (512)
|||. ...++++|++||+.++.|++|+.+++..|+..++..+......
T Consensus 166 ttn~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~l~~R~~~~~~~~p~~~~~~~~i~~~~l~~~~~~~~~------- 238 (311)
T 4fcw_A 166 TSNLGSPLILEGLQKGWPYERIRDEVFKVLQQHFRPEFLNRLDEIVVFRPLTKEQIRQIVEIQMSYLRARLAE------- 238 (311)
T ss_dssp EESTTHHHHHTTTTSCCCSSTHHHHTHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHTHHHHHHHHT-------
T ss_pred ecccCHHHHHhhhcccccHHHHHHHHHHHHHHhCCHHHHhcCCeEEEeCCCCHHHHHHHHHHHHHHHHHHHHh-------
Confidence 9998 4578999999999999999999999999999998875432110
Q ss_pred hhhhhhhhhhhhcCCCHHHHHHHHHHcC--CCcHHHHHHHHHHH
Q 010366 429 RLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSGREIAKLMASV 470 (512)
Q Consensus 429 ~~~~~~~~~~~~~~~~~~~l~~la~~t~--g~s~~dI~~lv~~~ 470 (512)
.+. ...++++++..|+.... .++.|+|..++..+
T Consensus 239 -------~~~-~~~~~~~~~~~l~~~~~~~~gn~R~L~~~i~~~ 274 (311)
T 4fcw_A 239 -------KRI-SLELTEAAKDFLAERGYDPVFGARPLRRVIQRE 274 (311)
T ss_dssp -------TTC-EEEECHHHHHHHHHHSCBTTTBTTTHHHHHHHH
T ss_pred -------CCc-EEEeCHHHHHHHHHhCCCccCCchhHHHHHHHH
Confidence 000 12388999999999876 67889999988533
No 44
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=99.81 E-value=2.1e-19 Score=193.74 Aligned_cols=229 Identities=16% Similarity=0.190 Sum_probs=146.7
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC----------C
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP----------L 307 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~----------~ 307 (512)
.++++|.++++..+........... ..+..+++|+||||||||++|+++|..++.++..++++.+.. +
T Consensus 80 ~~di~G~~~vk~~i~~~~~l~~~~~--~~~g~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i~~~~~~~~~~~~g~~~~~ 157 (543)
T 3m6a_A 80 DEEHHGLEKVKERILEYLAVQKLTK--SLKGPILCLAGPPGVGKTSLAKSIAKSLGRKFVRISLGGVRDESEIRGHRRTY 157 (543)
T ss_dssp HHHCSSCHHHHHHHHHHHHHHHHSS--SCCSCEEEEESSSSSSHHHHHHHHHHHHTCEEEEECCCC--------------
T ss_pred HHHhccHHHHHHHHHHHHHHHHhcc--cCCCCEEEEECCCCCCHHHHHHHHHHhcCCCeEEEEecccchhhhhhhHHHHH
Confidence 4679999999999966544322211 125568999999999999999999999999999999876532 1
Q ss_pred chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCC---------------CCCEEE
Q 010366 308 GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ---------------SKDIVL 372 (512)
Q Consensus 308 ~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~---------------~~~vii 372 (512)
.+.....+...|..+... .+|+||||+|.+...... ...+.|+..++.. ..+++|
T Consensus 158 ig~~~~~~~~~~~~a~~~--~~vl~lDEid~l~~~~~~--------~~~~~LL~~ld~~~~~~~~~~~~~~~~~~~~v~i 227 (543)
T 3m6a_A 158 VGAMPGRIIQGMKKAGKL--NPVFLLDEIDKMSSDFRG--------DPSSAMLEVLDPEQNSSFSDHYIEETFDLSKVLF 227 (543)
T ss_dssp ------CHHHHHHTTCSS--SEEEEEEESSSCC-----------------CCGGGTCTTTTTBCCCSSSCCCCBCSSCEE
T ss_pred hccCchHHHHHHHHhhcc--CCEEEEhhhhhhhhhhcc--------CHHHHHHHHHhhhhcceeecccCCeeecccceEE
Confidence 122223344455544333 349999999998544321 1334455544321 156899
Q ss_pred EEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHH
Q 010366 373 ALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAA 452 (512)
Q Consensus 373 I~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la 452 (512)
|+|||.++.++|+|++|| .+|.|++|+.+++..|+..++........... ... -.++++.+..++
T Consensus 228 I~ttN~~~~l~~aL~~R~-~vi~~~~~~~~e~~~Il~~~l~~~~~~~~~~~-----------~~~---i~i~~~~l~~l~ 292 (543)
T 3m6a_A 228 IATANNLATIPGPLRDRM-EIINIAGYTEIEKLEIVKDHLLPKQIKEHGLK-----------KSN---LQLRDQAILDII 292 (543)
T ss_dssp EEECSSTTTSCHHHHHHE-EEEECCCCCHHHHHHHHHHTHHHHHHHHTTCC-----------GGG---CEECHHHHHHHH
T ss_pred EeccCccccCCHHHHhhc-ceeeeCCCCHHHHHHHHHHHHHHHHHHHcCCC-----------ccc---ccCCHHHHHHHH
Confidence 999999999999999999 68999999999999999988744221111000 001 126888999987
Q ss_pred HHcC-CCcHHHHHHHH----HHHHHHHhC--CCCCccCHHHHHHHHHH
Q 010366 453 AKTE-GFSGREIAKLM----ASVQAAVYG--SENCVLDPSLFREVVDY 493 (512)
Q Consensus 453 ~~t~-g~s~~dI~~lv----~~~~aa~~~--~~~~~it~e~~~~al~~ 493 (512)
..+. ....|++++.+ ..+...... .....||.+++.+++..
T Consensus 293 ~~~~~~~~vR~L~~~i~~~~~~aa~~~~~~~~~~~~It~~~l~~~Lg~ 340 (543)
T 3m6a_A 293 RYYTREAGVRSLERQLAAICRKAAKAIVAEERKRITVTEKNLQDFIGK 340 (543)
T ss_dssp HHHCCCSSSHHHHHHHHHHHHHHHHHHHTTCCSCCEECTTTTHHHHCS
T ss_pred HhCChhhchhHHHHHHHHHHHHHHHHHHhcCCcceecCHHHHHHHhCC
Confidence 7544 34556666555 222111111 23357999999988754
No 45
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=99.81 E-value=1.4e-18 Score=165.88 Aligned_cols=206 Identities=21% Similarity=0.214 Sum_probs=149.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe---------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY--------------- 296 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~--------------- 296 (512)
.+.+..|++++|.+...+.+...+.. +..+..++|+||||||||++++.+++.++...
T Consensus 16 ~~~p~~~~~~~g~~~~~~~l~~~l~~-------~~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~ 88 (250)
T 1njg_A 16 KWRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 88 (250)
T ss_dssp HTCCCSGGGCCSCHHHHHHHHHHHHH-------TCCCSEEEEECSTTSCHHHHHHHHHHHHHCTTCSCSSCCSCSHHHHH
T ss_pred ccCCccHHHHhCcHHHHHHHHHHHHc-------CCCCeEEEEECCCCCCHHHHHHHHHHHhcCCCCCCCCCCcccHHHHH
Confidence 45667789999999999988766532 22334799999999999999999998875321
Q ss_pred ---------EEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 297 ---------ALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 297 ---------~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
+.++.. .......+..++..+.. ...+.+|||||++.+ ... .++.++..++
T Consensus 89 ~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~vlviDe~~~l---------~~~---~~~~l~~~l~ 151 (250)
T 1njg_A 89 IEQGRFVDLIEIDAA-----SRTKVEDTRDLLDNVQYAPARGRFKVYLIDEVHML---------SRH---SFNALLKTLE 151 (250)
T ss_dssp HHTTCCSSEEEEETT-----CGGGHHHHHHHHHSCCCSCSSSSSEEEEEETGGGS---------CHH---HHHHHHHHHH
T ss_pred HhccCCcceEEecCc-----ccccHHHHHHHHHHhhhchhcCCceEEEEECcccc---------cHH---HHHHHHHHHh
Confidence 222211 11223344455544321 224689999999986 222 3444555555
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 365 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
....++.+|++||.+..+++.+.+|+ ..+.|++|+.++...++..++..... .++
T Consensus 152 ~~~~~~~~i~~t~~~~~~~~~l~~r~-~~i~l~~l~~~e~~~~l~~~~~~~~~------------------------~~~ 206 (250)
T 1njg_A 152 EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI------------------------AHE 206 (250)
T ss_dssp SCCTTEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHTTC------------------------CBC
T ss_pred cCCCceEEEEEeCChHhCCHHHHHHh-hhccCCCCCHHHHHHHHHHHHHhcCC------------------------CCC
Confidence 55678999999999999999999998 88999999999999999988765321 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 445 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 445 ~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++.+..++..+.| +++.+..++..+ +..+. ..||.+++++++
T Consensus 207 ~~~~~~l~~~~~G-~~~~~~~~~~~~--~~~~~--~~i~~~~v~~~~ 248 (250)
T 1njg_A 207 PRALQLLARAAEG-SLRDALSLTDQA--IASGD--GQVSTQAVSAML 248 (250)
T ss_dssp HHHHHHHHHHHTT-CHHHHHHHHHHH--HTTTT--SSBCHHHHHHHS
T ss_pred HHHHHHHHHHcCC-CHHHHHHHHHHH--HhccC--ceecHHHHHHHh
Confidence 8889999999977 788888888644 22332 489999999875
No 46
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=99.80 E-value=7.3e-18 Score=171.10 Aligned_cols=217 Identities=19% Similarity=0.232 Sum_probs=156.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHH
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAV 312 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~ 312 (512)
..+..|++++|++.+...+...+... ...+.++.+++|+|||||||||+++++|..++.++...++..+.. +
T Consensus 19 lr~~~l~~~~g~~~~~~~l~~~i~~~---~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~~~~sg~~~~~-~---- 90 (334)
T 1in4_A 19 LRPKSLDEFIGQENVKKKLSLALEAA---KMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNIHVTSGPVLVK-Q---- 90 (334)
T ss_dssp TSCSSGGGCCSCHHHHHHHHHHHHHH---HHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCEEEEETTTCCS-H----
T ss_pred cCCccHHHccCcHHHHHHHHHHHHHH---HhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEechHhcC-H----
Confidence 34557899999998888776554332 223455678999999999999999999999999888777655432 1
Q ss_pred HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC---------------CCCCEEEEEeeC
Q 010366 313 TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD---------------QSKDIVLALATN 377 (512)
Q Consensus 313 ~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~---------------~~~~viiI~ttN 377 (512)
..+..++. ....+.|+||||++.+.. ...+.+...+..... ....+.++.+++
T Consensus 91 ~~l~~~~~---~~~~~~v~~iDE~~~l~~---------~~~e~L~~~~~~~~~~i~~~~~~~~~~i~~~l~~~~li~at~ 158 (334)
T 1in4_A 91 GDMAAILT---SLERGDVLFIDEIHRLNK---------AVEELLYSAIEDFQIDIMIGKGPSAKSIRIDIQPFTLVGATT 158 (334)
T ss_dssp HHHHHHHH---HCCTTCEEEEETGGGCCH---------HHHHHHHHHHHTSCCCC---------------CCCEEEEEES
T ss_pred HHHHHHHH---HccCCCEEEEcchhhcCH---------HHHHHHHHHHHhcccceeeccCcccccccccCCCeEEEEecC
Confidence 12222222 223468999999998732 223333333322110 112467788999
Q ss_pred CCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 378 RPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 378 ~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
.+..+++++++||...+.|++|+.+++.+|++........ .++++.+..||..+.|
T Consensus 159 ~~~~Ls~~l~sR~~l~~~Ld~~~~~~l~~iL~~~~~~~~~------------------------~~~~~~~~~ia~~~~G 214 (334)
T 1in4_A 159 RSGLLSSPLRSRFGIILELDFYTVKELKEIIKRAASLMDV------------------------EIEDAAAEMIAKRSRG 214 (334)
T ss_dssp CGGGSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHTTC------------------------CBCHHHHHHHHHTSTT
T ss_pred CcccCCHHHHHhcCceeeCCCCCHHHHHHHHHHHHHHcCC------------------------CcCHHHHHHHHHhcCC
Confidence 9999999999999888999999999999999988764321 2788999999999877
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 458 FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 458 ~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
+++.+..++..+...+...+...||.+++.++++..
T Consensus 215 -~~R~a~~ll~~~~~~a~~~~~~~It~~~v~~al~~~ 250 (334)
T 1in4_A 215 -TPRIAIRLTKRVRDMLTVVKADRINTDIVLKTMEVL 250 (334)
T ss_dssp -CHHHHHHHHHHHHHHHHHHTCSSBCHHHHHHHHHHH
T ss_pred -ChHHHHHHHHHHHHHHHHcCCCCcCHHHHHHHHHHh
Confidence 788888888766554443444689999999999764
No 47
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=99.80 E-value=2.9e-19 Score=183.42 Aligned_cols=238 Identities=18% Similarity=0.232 Sum_probs=150.9
Q ss_pred CccccChHHHHHHHHHHHHh-hchhh------cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC--ch
Q 010366 239 GDVILHPSLQKRIRQLSGAT-ANTKA------HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL--GP 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~-~~~~~------~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~--~~ 309 (512)
+.|+|++.+++.+...+... ..... ...++.++||+||||||||++|+++|..++.+|+.++++.+... .+
T Consensus 15 ~~i~G~~~~~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~~~l~~~~~~g 94 (363)
T 3hws_A 15 DYVIGQEQAKKVLAVAVYNHYKRLRNGDTSNGVELGKSNILLIGPTGSGKTLLAETLARLLDVPFTMADATTLTEAGYVG 94 (363)
T ss_dssp HHCCSCHHHHHHHHHHHHHHHHHHHTTSCSSSCCCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEHHHHTTCHHHH
T ss_pred hhccCHHHHHHHHHHHHHHHHhhhccccccccccCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEechHHhccccccc
Confidence 34799999999997655322 22111 11356789999999999999999999999999999999887643 22
Q ss_pred hH-HHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCCC--HHHHHHHHHHHHHcCC------------------
Q 010366 310 QA-VTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYMS--EAQRSALNALLFRTGD------------------ 365 (512)
Q Consensus 310 ~~-~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~~--~~~~~~l~~ll~~~~~------------------ 365 (512)
.. ...+..++..+. ...+++||||||+|.+...+.....+ .....+.+.|+..++.
T Consensus 95 ~~~~~~~~~~~~~~~~~~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~~~~~~Ll~~leg~~~~~~~~~~~~~~~~~~ 174 (363)
T 3hws_A 95 EDVENIIQKLLQKCDYDVQKAQRGIVYIDQIDKISRKSDNPSITRDVSGEGVQQALLKLIEGTVAAVPPQGGRKHPQQEF 174 (363)
T ss_dssp HHHTHHHHHHHHHTTTCHHHHHHCEEEEECHHHHCCCSSCC---CHHHHHHHHHHHHHHHHCC----------------C
T ss_pred ccHHHHHHHHHHHhhhhHHhcCCcEEEEeChhhhcccccccccccccchHHHHHHHHHHhcCceeeccCccccccCCCce
Confidence 22 334555555431 11236899999999997765443211 1112244444444331
Q ss_pred ---CCCCEEEEEeeCCC----------CC-----------------------------------CCHHHHccccceeecC
Q 010366 366 ---QSKDIVLALATNRP----------GD-----------------------------------LDSAVADRIDEVLEFP 397 (512)
Q Consensus 366 ---~~~~viiI~ttN~~----------~~-----------------------------------l~~al~~R~~~~i~~~ 397 (512)
...++++|+++|.. .. +.|+|++||+.++.|+
T Consensus 175 ~~i~tsn~~~i~~g~~~~l~~~i~~~~~~~~~~gf~~~~~~~~~~~~~~~l~~~v~~~~l~~~~~~~~l~~R~~~~~~~~ 254 (363)
T 3hws_A 175 LQVDTSKILFICGGAFAGLDKVISHRVETGSGIGFGATVKAKSDKASEGELLAQVEPEDLIKFGLIPEFIGRLPVVATLN 254 (363)
T ss_dssp CCCCTTSSEEEEEECCTTHHHHHHHHHCCCC------------CCSCHHHHHHTCCHHHHHHHTCCHHHHTTCCEEEECC
T ss_pred EEEECCCceEEecCCcHHHHHHHHHhhhccccCCccccccccccchhhHHHHHhCCHHHHHHcCCCHHHhcccCeeeecC
Confidence 22345566665542 11 7899999999999999
Q ss_pred CCCHHHHHHHHHH----HHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH--cCCCcHHHHHHHHHHHH
Q 010366 398 LPGQEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK--TEGFSGREIAKLMASVQ 471 (512)
Q Consensus 398 ~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~--t~g~s~~dI~~lv~~~~ 471 (512)
+|+.+++.+|+.. ++..+... +... ++. ..+++++++.|+.. ...+..|+|++++..+.
T Consensus 255 pl~~~~~~~I~~~~~~~l~~~~~~~------------~~~~--~~~-l~~~~~a~~~L~~~~~~~~~gaR~L~~~ie~~~ 319 (363)
T 3hws_A 255 ELSEEALIQILKEPKNALTKQYQAL------------FNLE--GVD-LEFRDEALDAIAKKAMARKTGARGLRSIVEAAL 319 (363)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHH------------HHTT--TCE-EEECHHHHHHHHHHHHHTTCTTTTHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHHHHHHHHHHH------------HHhc--Cce-EEECHHHHHHHHHhhcCCccCchHHHHHHHHHH
Confidence 9999999999987 44332211 1100 111 13789999999964 45667899999985443
Q ss_pred HH-Hh-C-CCC----CccCHHHHHHHH
Q 010366 472 AA-VY-G-SEN----CVLDPSLFREVV 491 (512)
Q Consensus 472 aa-~~-~-~~~----~~it~e~~~~al 491 (512)
.. .. . ... ..||.+++++.+
T Consensus 320 ~~~l~~~~~~~~~~~~~I~~~~v~~~~ 346 (363)
T 3hws_A 320 LDTMYDLPSMEDVEKVVIDESVIDGQS 346 (363)
T ss_dssp HHHHHSTTTCCCSEEEECHHHHTTCCS
T ss_pred HHHHHhcccccCCceeEEcHHHHhCcC
Confidence 22 22 1 111 257777776543
No 48
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.79 E-value=9.9e-19 Score=196.33 Aligned_cols=206 Identities=16% Similarity=0.198 Sum_probs=146.1
Q ss_pred CCccccChHHHHHHHHHHHHhh-chhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC---------
Q 010366 238 FGDVILHPSLQKRIRQLSGATA-NTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL--------- 307 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~-~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~--------- 307 (512)
.++++|++.++..+...+.... ....++.|..++||+||||||||++|+++|..++.+++.++++++...
T Consensus 457 ~~~v~g~~~~~~~l~~~i~~~~~g~~~~~~p~~~~ll~G~~GtGKT~la~~la~~l~~~~~~i~~s~~~~~~~~~~l~g~ 536 (758)
T 1r6b_X 457 KMLVFGQDKAIEALTEAIKMARAGLGHEHKPVGSFLFAGPTGVGKTEVTVQLSKALGIELLRFDMSEYMERHTVSRLIGA 536 (758)
T ss_dssp TTTSCSCHHHHHHHHHHHHHHHTTCSCTTSCSEEEEEECSTTSSHHHHHHHHHHHHTCEEEEEEGGGCSSSSCCSSSCCC
T ss_pred HhhccCHHHHHHHHHHHHHHHhcccCCCCCCceEEEEECCCCCcHHHHHHHHHHHhcCCEEEEechhhcchhhHhhhcCC
Confidence 3789999999999876555433 333455677789999999999999999999999999999998876431
Q ss_pred --chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--C------CCCCEEEEEeeC
Q 010366 308 --GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--D------QSKDIVLALATN 377 (512)
Q Consensus 308 --~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~------~~~~viiI~ttN 377 (512)
+.........+..... ..+++||||||||++ +......|..+++.-. + ...+++||+|||
T Consensus 537 ~~g~~g~~~~~~l~~~~~-~~~~~vl~lDEi~~~---------~~~~~~~Ll~~le~~~~~~~~g~~~~~~~~~iI~tsN 606 (758)
T 1r6b_X 537 PPGYVGFDQGGLLTDAVI-KHPHAVLLLDEIEKA---------HPDVFNILLQVMDNGTLTDNNGRKADFRNVVLVMTTN 606 (758)
T ss_dssp CSCSHHHHHTTHHHHHHH-HCSSEEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTTEEEECTTEEEEEEEC
T ss_pred CCCCcCccccchHHHHHH-hCCCcEEEEeCcccc---------CHHHHHHHHHHhcCcEEEcCCCCEEecCCeEEEEecC
Confidence 1111111122333333 355899999999986 3344444444444310 0 136789999999
Q ss_pred CCC-------------------------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhh
Q 010366 378 RPG-------------------------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFK 432 (512)
Q Consensus 378 ~~~-------------------------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~ 432 (512)
.+. .++|+|++||+.+|.|++|+.+++..|+..++..+... +.
T Consensus 607 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~l~~R~~~~i~~~~l~~~~~~~i~~~~l~~~~~~------------~~ 674 (758)
T 1r6b_X 607 AGVRETERKSIGLIHQDNSTDAMEEIKKIFTPEFRNRLDNIIWFDHLSTDVIHQVVDKFIVELQVQ------------LD 674 (758)
T ss_dssp SSCC-----------------CHHHHHHHSCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHHHH------------HH
T ss_pred cchhhhhhcccCccccchHHHHHHHHHHhcCHHHHhhCCcceeeCCCCHHHHHHHHHHHHHHHHHH------------HH
Confidence 854 67899999999999999999999999999998765322 11
Q ss_pred hhhhhhhhcCCCHHHHHHHHHHcC--CCcHHHHHHHHH
Q 010366 433 SEQQKIEIKGLTDDILMEAAAKTE--GFSGREIAKLMA 468 (512)
Q Consensus 433 ~~~~~~~~~~~~~~~l~~la~~t~--g~s~~dI~~lv~ 468 (512)
. .++. ..+++++++.|+.... .++.|++..++.
T Consensus 675 ~--~~~~-~~~~~~a~~~l~~~~~~~~~g~R~l~~~i~ 709 (758)
T 1r6b_X 675 Q--KGVS-LEVSQEARNWLAEKGYDRAMGARPMARVIQ 709 (758)
T ss_dssp H--TTEE-EEECHHHHHHHHHHHCBTTTBTTTHHHHHH
T ss_pred H--CCcE-EEeCHHHHHHHHHhCCCcCCCchHHHHHHH
Confidence 1 0111 1378999999998753 455788888874
No 49
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.79 E-value=1.4e-18 Score=176.80 Aligned_cols=210 Identities=17% Similarity=0.172 Sum_probs=146.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC------CCeEEEeCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG------LDYALMTGGDVA 305 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~------~~~~~v~~~~~~ 305 (512)
++.+..|++++|++++++.+...+. .+.+ .++||+||||||||++|++++..++ ..++.+++++..
T Consensus 30 k~~p~~~~~i~g~~~~~~~l~~~l~-------~~~~-~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 101 (353)
T 1sxj_D 30 KYRPKNLDEVTAQDHAVTVLKKTLK-------SANL-PHMLFYGPPGTGKTSTILALTKELYGPDLMKSRILELNASDER 101 (353)
T ss_dssp HTCCSSTTTCCSCCTTHHHHHHHTT-------CTTC-CCEEEECSTTSSHHHHHHHHHHHHHHHHHHTTSEEEECSSSCC
T ss_pred hcCCCCHHHhhCCHHHHHHHHHHHh-------cCCC-CEEEEECCCCCCHHHHHHHHHHHhCCCcccccceEEEcccccc
Confidence 5778889999999999988865541 1222 3599999999999999999998864 467888877643
Q ss_pred CCchhHHHHHHHHHHHHH---------------hcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCE
Q 010366 306 PLGPQAVTKIHQLFDWAK---------------KSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDI 370 (512)
Q Consensus 306 ~~~~~~~~~l~~lf~~a~---------------~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~v 370 (512)
. .. .+...+.... ....+.||||||+|.+. ......|..++ ++...++
T Consensus 102 ~--~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vliiDE~~~l~---------~~~~~~Ll~~l---e~~~~~~ 164 (353)
T 1sxj_D 102 G--IS---IVREKVKNFARLTVSKPSKHDLENYPCPPYKIIILDEADSMT---------ADAQSALRRTM---ETYSGVT 164 (353)
T ss_dssp C--HH---HHTTHHHHHHHSCCCCCCTTHHHHSCCCSCEEEEETTGGGSC---------HHHHHHHHHHH---HHTTTTE
T ss_pred c--hH---HHHHHHHHHhhhcccccchhhcccCCCCCceEEEEECCCccC---------HHHHHHHHHHH---HhcCCCc
Confidence 2 11 1111111111 11335699999999972 23333444444 4345678
Q ss_pred EEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHH
Q 010366 371 VLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILME 450 (512)
Q Consensus 371 iiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 450 (512)
.+|++||.+..+.+++.+|+ ..+.|++|+.++...++...+..... .++++.+..
T Consensus 165 ~~il~~~~~~~l~~~l~sR~-~~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~i~~~~l~~ 219 (353)
T 1sxj_D 165 RFCLICNYVTRIIDPLASQC-SKFRFKALDASNAIDRLRFISEQENV------------------------KCDDGVLER 219 (353)
T ss_dssp EEEEEESCGGGSCHHHHHHS-EEEECCCCCHHHHHHHHHHHHHTTTC------------------------CCCHHHHHH
T ss_pred eEEEEeCchhhCcchhhccC-ceEEeCCCCHHHHHHHHHHHHHHhCC------------------------CCCHHHHHH
Confidence 88899999999999999999 58999999999999999887754221 278999999
Q ss_pred HHHHcCCCcHHHHHHHHHHHHHHHhCCC-CCccCHHHHHHHHH
Q 010366 451 AAAKTEGFSGREIAKLMASVQAAVYGSE-NCVLDPSLFREVVD 492 (512)
Q Consensus 451 la~~t~g~s~~dI~~lv~~~~aa~~~~~-~~~it~e~~~~al~ 492 (512)
++..+.| +++.+..++..+.......+ ...||.+++.+++.
T Consensus 220 l~~~~~G-~~r~~~~~l~~~~~~~~~~~~~~~It~~~v~~~~~ 261 (353)
T 1sxj_D 220 ILDISAG-DLRRGITLLQSASKGAQYLGDGKNITSTQVEELAG 261 (353)
T ss_dssp HHHHTSS-CHHHHHHHHHHTHHHHHHHCSCCCCCHHHHHHHHT
T ss_pred HHHHcCC-CHHHHHHHHHHHHHhcCCCccCccccHHHHHHHhC
Confidence 9999987 56666666644333322111 12799999887764
No 50
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=99.79 E-value=5.8e-19 Score=178.68 Aligned_cols=236 Identities=15% Similarity=0.108 Sum_probs=154.2
Q ss_pred CCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCC----chhHHH
Q 010366 238 FGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPL----GPQAVT 313 (512)
Q Consensus 238 ~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~----~~~~~~ 313 (512)
+++++|++.++..+...+.. + .++||+||||||||++|+++|+.++.+++.+++...... +.....
T Consensus 26 ~~~i~g~~~~~~~l~~~l~~-------~---~~vll~G~pGtGKT~la~~la~~~~~~~~~i~~~~~~~~~~l~g~~~~~ 95 (331)
T 2r44_A 26 GKVVVGQKYMINRLLIGICT-------G---GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQFTPDLLPSDLIGTMIYN 95 (331)
T ss_dssp TTTCCSCHHHHHHHHHHHHH-------T---CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEECCTTCCHHHHHEEEEEE
T ss_pred ccceeCcHHHHHHHHHHHHc-------C---CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEecCCCCChhhcCCceeec
Confidence 68999999998887554422 1 369999999999999999999999999999987432110 000000
Q ss_pred HHHHHHHHHHhcC--CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCCC---
Q 010366 314 KIHQLFDWAKKSK--RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRPG--- 380 (512)
Q Consensus 314 ~l~~lf~~a~~~~--~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~~--- 380 (512)
.....+. .... .++||||||++.+ +......|...+.... ..+.+++||+|+|..+
T Consensus 96 ~~~~~~~--~~~g~l~~~vl~iDEi~~~---------~~~~~~~Ll~~l~~~~~~~~g~~~~~~~~~~viat~np~~~~~ 164 (331)
T 2r44_A 96 QHKGNFE--VKKGPVFSNFILADEVNRS---------PAKVQSALLECMQEKQVTIGDTTYPLDNPFLVLATQNPVEQEG 164 (331)
T ss_dssp TTTTEEE--EEECTTCSSEEEEETGGGS---------CHHHHHHHHHHHHHSEEEETTEEEECCSSCEEEEEECTTCCSC
T ss_pred CCCCceE--eccCcccccEEEEEccccC---------CHHHHHHHHHHHhcCceeeCCEEEECCCCEEEEEecCCCcccC
Confidence 0000000 0001 0279999999996 3344555555554321 1345688888888543
Q ss_pred --CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc---
Q 010366 381 --DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT--- 455 (512)
Q Consensus 381 --~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t--- 455 (512)
.+++++++||+..+.+++|+.+++.+|++..+..... ....+......+........--.++++.++.++...
T Consensus 165 ~~~l~~~l~~Rf~~~i~i~~p~~~~~~~il~~~~~~~~~--~~~~~~~~~~~i~~~~~~~~~v~~~~~~~~~i~~~~~~~ 242 (331)
T 2r44_A 165 TYPLPEAQVDRFMMKIHLTYLDKESELEVMRRVSNMNFN--YQVQKIVSKNDVLEIRNEINKVTISESLEKYIIELVFAT 242 (331)
T ss_dssp CCCCCHHHHTTSSEEEECCCCCHHHHHHHHHHHHCTTCC--CCCCCCSCHHHHHHHHHHHHTCBCCHHHHHHHHHHHHHH
T ss_pred cccCCHHHHhheeEEEEcCCCCHHHHHHHHHhccccCcc--hhccccCCHHHHHHHHHHhccCCCCHHHHHHHHHHHHHH
Confidence 3899999999888999999999999999988754210 000000001111111111111237888888877643
Q ss_pred ----------------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 010366 456 ----------------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 456 ----------------~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~ 496 (512)
.|.|+|....++..+.+.+.-.+...++.+|+.+++.....
T Consensus 243 r~~~~~~~~~~~~~~~~~~s~R~~~~ll~~a~a~A~l~g~~~v~~~dv~~~~~~vl~ 299 (331)
T 2r44_A 243 RFPAEYGLEAEASYILYGASTRAAINLNRVAKAMAFFNNRDYVLPEDIKEVAYDILN 299 (331)
T ss_dssp HSGGGGTCHHHHHHEEECCCHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHHHHHT
T ss_pred hccccccccccccccccCcChhHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHHhH
Confidence 25699999999988888777666678999999999988753
No 51
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=99.78 E-value=1.7e-18 Score=166.02 Aligned_cols=210 Identities=14% Similarity=0.146 Sum_probs=139.2
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---CCeEEEeCCCCCCCchh
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPLGPQ 310 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~~~~~~~~~~~ 310 (512)
+..+|+++++.+.....+..+...... .+..+++|+||||||||++|++++..+. .+++++++.++......
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~l~~~~~~-----~~~~~~ll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 97 (242)
T 3bos_A 23 DDETFTSYYPAAGNDELIGALKSAASG-----DGVQAIYLWGPVKSGRTHLIHAACARANELERRSFYIPLGIHASISTA 97 (242)
T ss_dssp TTCSTTTSCC--CCHHHHHHHHHHHHT-----CSCSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEGGGGGGSCGG
T ss_pred CCCChhhccCCCCCHHHHHHHHHHHhC-----CCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHH
Confidence 446799999843222333332222221 1345899999999999999999998874 77888888765443221
Q ss_pred HHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC-CC---CCCHHH
Q 010366 311 AVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PG---DLDSAV 386 (512)
Q Consensus 311 ~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~-~~---~l~~al 386 (512)
. +. ....+.+|||||++.+.... .....+..++..... ...+.+|++||. +. .+++.+
T Consensus 98 ~-------~~---~~~~~~vliiDe~~~~~~~~-------~~~~~l~~~l~~~~~-~~~~~ii~~~~~~~~~~~~~~~~l 159 (242)
T 3bos_A 98 L-------LE---GLEQFDLICIDDVDAVAGHP-------LWEEAIFDLYNRVAE-QKRGSLIVSASASPMEAGFVLPDL 159 (242)
T ss_dssp G-------GT---TGGGSSEEEEETGGGGTTCH-------HHHHHHHHHHHHHHH-HCSCEEEEEESSCTTTTTCCCHHH
T ss_pred H-------HH---hccCCCEEEEeccccccCCH-------HHHHHHHHHHHHHHH-cCCCeEEEEcCCCHHHHHHhhhhh
Confidence 1 11 11336899999999974321 123344444443321 122335555553 33 456999
Q ss_pred Hcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHH
Q 010366 387 ADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIA 464 (512)
Q Consensus 387 ~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~ 464 (512)
.+||. .++.|++|+.+++..++..++..... .++++.++.++..+.| +.+++.
T Consensus 160 ~~r~~~~~~i~l~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~g-~~r~l~ 214 (242)
T 3bos_A 160 VSRMHWGLTYQLQPMMDDEKLAALQRRAAMRGL------------------------QLPEDVGRFLLNRMAR-DLRTLF 214 (242)
T ss_dssp HHHHHHSEEEECCCCCGGGHHHHHHHHHHHTTC------------------------CCCHHHHHHHHHHTTT-CHHHHH
T ss_pred hhHhhcCceEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHccC-CHHHHH
Confidence 99996 88999999999999999998864321 2789999999999866 788998
Q ss_pred HHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 465 KLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 465 ~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
.++..+...+...+ ..||.+++.++++
T Consensus 215 ~~l~~~~~~a~~~~-~~It~~~v~~~l~ 241 (242)
T 3bos_A 215 DVLDRLDKASMVHQ-RKLTIPFVKEMLR 241 (242)
T ss_dssp HHHHHHHHHHHHHT-CCCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHhC-CCCcHHHHHHHhh
Confidence 88866655543222 5699999998874
No 52
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=99.77 E-value=2.1e-18 Score=172.68 Aligned_cols=208 Identities=24% Similarity=0.229 Sum_probs=146.0
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~ 306 (512)
++.+..|++++|++..+..+...+. . +.. .++||+||||||||++|+++++.+ +.+++.+++++...
T Consensus 10 k~~p~~~~~~~g~~~~~~~l~~~l~------~-~~~-~~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 81 (319)
T 2chq_A 10 KYRPRTLDEVVGQDEVIQRLKGYVE------R-KNI-PHLLFSGPPGTGKTATAIALARDLFGENWRDNFIEMNASDERG 81 (319)
T ss_dssp TTSCSSGGGSCSCHHHHHHHHTTTT------T-TCC-CCEEEESSSSSSHHHHHHHHHHHHHTTCHHHHCEEEETTSTTC
T ss_pred hcCCCCHHHHhCCHHHHHHHHHHHh------C-CCC-CeEEEECcCCcCHHHHHHHHHHHhcCCcccCCeEEEeCccccC
Confidence 5677889999999999988865442 1 222 259999999999999999999986 34578888876533
Q ss_pred CchhHHHHHHHHHHHH-HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHH
Q 010366 307 LGPQAVTKIHQLFDWA-KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSA 385 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a-~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~a 385 (512)
... ....+....... ....++.||+|||+|.+. . ...+.|+..++..+.++++|++||.+..+.++
T Consensus 82 ~~~-~~~~~~~~~~~~~~~~~~~~vliiDe~~~l~---------~---~~~~~L~~~le~~~~~~~~i~~~~~~~~l~~~ 148 (319)
T 2chq_A 82 IDV-VRHKIKEFARTAPIGGAPFKIIFLDEADALT---------A---DAQAALRRTMEMYSKSCRFILSCNYVSRIIEP 148 (319)
T ss_dssp TTT-SSHHHHHHHHSCCSSSCCCEEEEEETGGGSC---------H---HHHHTTGGGTSSSSSSEEEEEEESCGGGSCHH
T ss_pred hHH-HHHHHHHHHhcCCCCCCCceEEEEeCCCcCC---------H---HHHHHHHHHHHhcCCCCeEEEEeCChhhcchH
Confidence 111 111111111000 001347899999999972 1 23455666667777889999999999999999
Q ss_pred HHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 386 VADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 386 l~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
+.+|+ ..+.|++|+.+++..++...+..... .++++.+..++..+.| +.+.+..
T Consensus 149 l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~i~~~~l~~l~~~~~G-~~r~~~~ 202 (319)
T 2chq_A 149 IQSRC-AVFRFKPVPKEAMKKRLLEICEKEGV------------------------KITEDGLEALIYISGG-DFRKAIN 202 (319)
T ss_dssp HHTTC-EEEECCCCCHHHHHHHHHHHHHTTCC------------------------CBCHHHHHHHHHTTTT-CHHHHHH
T ss_pred HHhhC-eEEEecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CHHHHHH
Confidence 99999 58999999999999999888764321 2788999999987755 5555555
Q ss_pred HHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 466 LMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 466 lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++. .++... ..||.+++..++
T Consensus 203 ~l~---~~~~~~--~~i~~~~v~~~~ 223 (319)
T 2chq_A 203 ALQ---GAAAIG--EVVDADTIYQIT 223 (319)
T ss_dssp HHH---HHHHSS--SCBCHHHHHHHT
T ss_pred HHH---HHHHcC--CCCCHHHHHHHH
Confidence 543 333322 467877776554
No 53
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=99.77 E-value=6.6e-18 Score=169.70 Aligned_cols=204 Identities=22% Similarity=0.261 Sum_probs=141.4
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC-----CCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG-----LDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~-----~~~~~v~~~~~~~ 306 (512)
++.+..|++++|++..+..+...+.. +.+ .++||+||||||||++|+++++.+. .+++.+++++..
T Consensus 18 k~~p~~~~~~~g~~~~~~~l~~~l~~-------~~~-~~~ll~G~~G~GKT~la~~l~~~l~~~~~~~~~~~~~~~~~~- 88 (327)
T 1iqp_A 18 KYRPQRLDDIVGQEHIVKRLKHYVKT-------GSM-PHLLFAGPPGVGKTTAALALARELFGENWRHNFLELNASDER- 88 (327)
T ss_dssp HTCCCSTTTCCSCHHHHHHHHHHHHH-------TCC-CEEEEESCTTSSHHHHHHHHHHHHHGGGHHHHEEEEETTCHH-
T ss_pred ccCCCCHHHhhCCHHHHHHHHHHHHc-------CCC-CeEEEECcCCCCHHHHHHHHHHHhcCCcccCceEEeeccccC-
Confidence 57788899999999999988766532 222 2599999999999999999999864 347777765431
Q ss_pred CchhHHHHHHHHHHHHHh-----cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKK-----SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~-----~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~ 381 (512)
....+...+..... ..++.+|+|||+|.+ +...... |+..++..+.+++||++||.+..
T Consensus 89 ----~~~~~~~~~~~~~~~~~~~~~~~~vliiDe~~~l---------~~~~~~~---L~~~le~~~~~~~~i~~~~~~~~ 152 (327)
T 1iqp_A 89 ----GINVIREKVKEFARTKPIGGASFKIIFLDEADAL---------TQDAQQA---LRRTMEMFSSNVRFILSCNYSSK 152 (327)
T ss_dssp ----HHHTTHHHHHHHHHSCCGGGCSCEEEEEETGGGS---------CHHHHHH---HHHHHHHTTTTEEEEEEESCGGG
T ss_pred ----chHHHHHHHHHHHhhCCcCCCCCeEEEEeCCCcC---------CHHHHHH---HHHHHHhcCCCCeEEEEeCCccc
Confidence 11122222221111 134789999999997 2233333 44444445678899999999999
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+.+.+.+|+ ..+.|++|+.++...++...+..... .++++.+..++..+.| +++
T Consensus 153 l~~~l~sr~-~~~~~~~l~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~g-~~r 206 (327)
T 1iqp_A 153 IIEPIQSRC-AIFRFRPLRDEDIAKRLRYIAENEGL------------------------ELTEEGLQAILYIAEG-DMR 206 (327)
T ss_dssp SCHHHHHTE-EEEECCCCCHHHHHHHHHHHHHTTTC------------------------EECHHHHHHHHHHHTT-CHH
T ss_pred cCHHHHhhC-cEEEecCCCHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHHCCC-CHH
Confidence 999999999 58999999999999999887754321 1788899999988866 566
Q ss_pred HHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
.+..++. .+.... ..||.+++..++
T Consensus 207 ~~~~~l~---~~~~~~--~~i~~~~v~~~~ 231 (327)
T 1iqp_A 207 RAINILQ---AAAALD--KKITDENVFMVA 231 (327)
T ss_dssp HHHHHHH---HHHTTC--SEECHHHHHHHT
T ss_pred HHHHHHH---HHHhcC--CCCCHHHHHHHH
Confidence 6555553 333222 356666555443
No 54
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=99.77 E-value=4.3e-17 Score=167.82 Aligned_cols=224 Identities=17% Similarity=0.180 Sum_probs=157.1
Q ss_pred CCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCCCCCC---
Q 010366 235 GNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPL--- 307 (512)
Q Consensus 235 ~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~~~~~--- 307 (512)
...+++++|.+.....+...+........+ .+++++|+||||||||+++++++..+ +.++++++|......
T Consensus 13 ~~~p~~l~gr~~~~~~l~~~l~~~~~~~~~--~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~~~~~~~~~~~ 90 (389)
T 1fnn_A 13 SYVPKRLPHREQQLQQLDILLGNWLRNPGH--HYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYINGFIYRNFTAI 90 (389)
T ss_dssp TCCCSCCTTCHHHHHHHHHHHHHHHHSTTS--SCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEETTTCCSHHHH
T ss_pred ccCCCCCCChHHHHHHHHHHHHHHHcCCCC--CCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEeCccCCCHHHH
Confidence 334588999999999887766543221111 11279999999999999999999998 567889997664321
Q ss_pred ---------------chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCC----C
Q 010366 308 ---------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQS----K 368 (512)
Q Consensus 308 ---------------~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~----~ 368 (512)
+......+..+.........+.||||||++.+ . ...+..++..+.... .
T Consensus 91 ~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l---------~---~~~~~~L~~~~~~~~~~~~~ 158 (389)
T 1fnn_A 91 IGEIARSLNIPFPRRGLSRDEFLALLVEHLRERDLYMFLVLDDAFNL---------A---PDILSTFIRLGQEADKLGAF 158 (389)
T ss_dssp HHHHHHHTTCCCCSSCCCHHHHHHHHHHHHHHTTCCEEEEEETGGGS---------C---HHHHHHHHHHTTCHHHHSSC
T ss_pred HHHHHHHhCccCCCCCCCHHHHHHHHHHHHhhcCCeEEEEEECcccc---------c---hHHHHHHHHHHHhCCCCCcC
Confidence 11112222333333334455789999999996 1 233444444443222 5
Q ss_pred CEEEEEeeCCC---CCCCHHHHccccc-eeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 369 DIVLALATNRP---GDLDSAVADRIDE-VLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 369 ~viiI~ttN~~---~~l~~al~~R~~~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
++.||++||.+ ..+++.+.+||.. .+.|++|+.++...++...+...... ..++
T Consensus 159 ~~~iI~~~~~~~~~~~l~~~~~~r~~~~~i~~~pl~~~~~~~~l~~~~~~~~~~----------------------~~~~ 216 (389)
T 1fnn_A 159 RIALVIVGHNDAVLNNLDPSTRGIMGKYVIRFSPYTKDQIFDILLDRAKAGLAE----------------------GSYS 216 (389)
T ss_dssp CEEEEEEESSTHHHHTSCHHHHHHHTTCEEECCCCBHHHHHHHHHHHHHHHBCT----------------------TSSC
T ss_pred CEEEEEEECCchHHHHhCHHhhhcCCCceEEeCCCCHHHHHHHHHHHHHhhcCC----------------------CCCC
Confidence 88999999987 6789999999965 79999999999999999888653211 1388
Q ss_pred HHHHHHHHHHcC--------CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 445 DDILMEAAAKTE--------GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 445 ~~~l~~la~~t~--------g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
++.+..++..+. +..++.+..++..+...+...+...++.+++..++...
T Consensus 217 ~~~~~~l~~~~~~~~~~~~~~G~~r~~~~~l~~a~~~a~~~~~~~i~~~~v~~~~~~~ 274 (389)
T 1fnn_A 217 EDILQMIADITGAQTPLDTNRGDARLAIDILYRSAYAAQQNGRKHIAPEDVRKSSKEV 274 (389)
T ss_dssp HHHHHHHHHHHSBSSTTCTTSCCHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhcccCCCCCCcHHHHHHHHHHHHHHHHHhCCCCcCHHHHHHHHHHH
Confidence 999999999984 33678888888666555554555789999999887654
No 55
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=99.77 E-value=1.7e-17 Score=170.14 Aligned_cols=206 Identities=21% Similarity=0.218 Sum_probs=149.5
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---------------- 295 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---------------- 295 (512)
++.+..|++++|++.....+...+.. +..+..+||+||||||||++|+++++.++..
T Consensus 9 k~rp~~~~~~vg~~~~~~~L~~~l~~-------~~~~~~~ll~G~~G~GKT~la~~la~~l~~~~~~~~~~~~~~~~~~~ 81 (373)
T 1jr3_A 9 KWRPQTFADVVGQEHVLTALANGLSL-------GRIHHAYLFSGTRGVGKTSIARLLAKGLNCETGITATPCGVCDNCRE 81 (373)
T ss_dssp HTCCCSTTTSCSCHHHHHHHHHHHHH-------TCCCSEEEEESCTTSSHHHHHHHHHHHHSCTTCSCSSCCSSSHHHHH
T ss_pred hhCCCchhhccCcHHHHHHHHHHHHh-------CCCCeEEEEECCCCCCHHHHHHHHHHHhCCCCCCCCCCCcccHHHHH
Confidence 56778899999999999988766532 2333468999999999999999999988642
Q ss_pred --------eEEEeCCCCCCCchhHHHHHHHHHHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC
Q 010366 296 --------YALMTGGDVAPLGPQAVTKIHQLFDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG 364 (512)
Q Consensus 296 --------~~~v~~~~~~~~~~~~~~~l~~lf~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~ 364 (512)
++.+++.... + ...+..++..+.. ...+.||+|||+|.+ +. ..++.++..++
T Consensus 82 ~~~~~~~~~~~~~~~~~~--~---~~~~~~l~~~~~~~~~~~~~~vliiDe~~~l---------~~---~~~~~Ll~~le 144 (373)
T 1jr3_A 82 IEQGRFVDLIEIDAASRT--K---VEDTRDLLDNVQYAPARGRFKVYLIDEVHML---------SR---HSFNALLKTLE 144 (373)
T ss_dssp HHTSCCSSCEEEETTCSC--C---SSCHHHHHHHTTSCCSSSSSEEEEEECGGGS---------CH---HHHHHHHHHHH
T ss_pred HhccCCCceEEecccccC--C---HHHHHHHHHHHhhccccCCeEEEEEECcchh---------cH---HHHHHHHHHHh
Confidence 2333332211 1 1123445544432 223679999999997 22 23455565566
Q ss_pred CCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 365 DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 365 ~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
+.+.++++|++|+.+..+.+.+.+|+ ..+.|++|+.++...++...+..... .++
T Consensus 145 ~~~~~~~~Il~~~~~~~l~~~l~sr~-~~i~~~~l~~~~~~~~l~~~~~~~~~------------------------~~~ 199 (373)
T 1jr3_A 145 EPPEHVKFLLATTDPQKLPVTILSRC-LQFHLKALDVEQIRHQLEHILNEEHI------------------------AHE 199 (373)
T ss_dssp SCCSSEEEEEEESCGGGSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CBC
T ss_pred cCCCceEEEEEeCChHhCcHHHHhhe-eEeeCCCCCHHHHHHHHHHHHHHcCC------------------------CCC
Confidence 66778999999999999999999999 89999999999999999988866432 278
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHH
Q 010366 445 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVV 491 (512)
Q Consensus 445 ~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al 491 (512)
++.+..++..+.| +++.+..++..+.. ++. ..||.+++.+++
T Consensus 200 ~~a~~~l~~~~~G-~~r~~~~~l~~~~~--~~~--~~i~~~~v~~~~ 241 (373)
T 1jr3_A 200 PRALQLLARAAEG-SLRDALSLTDQAIA--SGD--GQVSTQAVSAML 241 (373)
T ss_dssp HHHHHHHHHHSSS-CHHHHHHHHHHHHH--HTT--TCBCHHHHHHHT
T ss_pred HHHHHHHHHHCCC-CHHHHHHHHHHHHH--hcC--CcccHHHHHHHh
Confidence 8899999999966 78888888754432 232 468888887664
No 56
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=99.77 E-value=1e-17 Score=170.33 Aligned_cols=248 Identities=15% Similarity=0.136 Sum_probs=148.3
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeE----EEeCCCCCC--
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYA----LMTGGDVAP-- 306 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~----~v~~~~~~~-- 306 (512)
.++.+|++++|++.++..+.... ... ...++||+||||||||++|++++..++.... .++|.....
T Consensus 18 ~~~~~f~~i~G~~~~~~~l~~~~---~~~-----~~~~vLl~G~~GtGKT~la~~la~~~~~~~~~~~~~~~~~~~~~~~ 89 (350)
T 1g8p_A 18 RPVFPFSAIVGQEDMKLALLLTA---VDP-----GIGGVLVFGDRGTGKSTAVRALAALLPEIEAVEGCPVSSPNVEMIP 89 (350)
T ss_dssp CCCCCGGGSCSCHHHHHHHHHHH---HCG-----GGCCEEEECCGGGCTTHHHHHHHHHSCCEEEETTCTTCCSSGGGSC
T ss_pred CCCCCchhccChHHHHHHHHHHh---hCC-----CCceEEEECCCCccHHHHHHHHHHhCcccccccccccccccccccc
Confidence 45567999999998776542211 111 1236999999999999999999998863100 011111100
Q ss_pred --------------------CchhHHHHH------HHHHHHHH-h-------cCCCcEEEEccchhhhhhcccCCCCHHH
Q 010366 307 --------------------LGPQAVTKI------HQLFDWAK-K-------SKRGLLLFIDEADAFLCERNKTYMSEAQ 352 (512)
Q Consensus 307 --------------------~~~~~~~~l------~~lf~~a~-~-------~~~~~vl~lDEid~l~~~~~~~~~~~~~ 352 (512)
..+.+...+ ...+.... . ...+++|||||++.+ +...
T Consensus 90 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~g~~~~a~~~vl~iDEi~~l---------~~~~ 160 (350)
T 1g8p_A 90 DWATVLSTNVIRKPTPVVDLPLGVSEDRVVGALDIERAISKGEKAFEPGLLARANRGYLYIDECNLL---------EDHI 160 (350)
T ss_dssp TTCCCSCCCEEEECCCEEEECTTCCHHHHHCEECHHHHHHHCGGGEECCHHHHHTTEEEEETTGGGS---------CHHH
T ss_pred chhhhhccccccCCCcccccCCCcchhhheeechhhhhhcCCceeecCceeeecCCCEEEEeChhhC---------CHHH
Confidence 000001111 11111110 0 012679999999997 3344
Q ss_pred HHHHHHHHHH----cCC------CCCCEEEEEeeCCCC-CCCHHHHccccceeecCCC-CHHHHHHHHHHHHHHHhhhhC
Q 010366 353 RSALNALLFR----TGD------QSKDIVLALATNRPG-DLDSAVADRIDEVLEFPLP-GQEERFKLLKLYLDKYIAQAG 420 (512)
Q Consensus 353 ~~~l~~ll~~----~~~------~~~~viiI~ttN~~~-~l~~al~~R~~~~i~~~~p-~~~er~~Il~~~l~~~~~~~~ 420 (512)
...|..++.. +.. .+.++++|+|||... .+++++++||+..+.+++| +.+++..|+...+........
T Consensus 161 ~~~Ll~~le~~~~~~~~~g~~~~~~~~~~li~~~n~~~~~l~~~L~~R~~~~~~l~~~~~~~~~~~il~~~~~~~~~~~~ 240 (350)
T 1g8p_A 161 VDLLLDVAQSGENVVERDGLSIRHPARFVLVGSGNPEEGDLRPQLLDRFGLSVEVLSPRDVETRVEVIRRRDTYDADPKA 240 (350)
T ss_dssp HHHHHHHHHHSEEEECCTTCCEEEECCEEEEEEECSCSCCCCHHHHTTCSEEEECCCCCSHHHHHHHHHHHHHHHHCHHH
T ss_pred HHHHHHHHhcCceEEEecceEEeeCCceEEEEEeCCCCCCCCHHHHhhcceEEEcCCCCcHHHHHHHHHHHHhcccCchh
Confidence 5555555544 111 123789999999744 8999999999888999999 577777998875432110000
Q ss_pred -----CCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC--C-cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 421 -----SRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG--F-SGREIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 421 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g--~-s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
......+...+........--.++++++..|+..+.+ . +.|.+..++..+.+.+...+...|+.+|+.+|+.
T Consensus 241 ~~~~~~~~~~~~~~~i~~~~~~~~~~~ls~~~~~~l~~~~~~~~~~~~R~~~~ll~~a~~~A~~~~~~~v~~~~v~~a~~ 320 (350)
T 1g8p_A 241 FLEEWRPKDMDIRNQILEARERLPKVEAPNTALYDCAALCIALGSDGLRGELTLLRSARALAALEGATAVGRDHLKRVAT 320 (350)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHGGGCBCCHHHHHHHHHHHHHSSSCSHHHHHHHHHHHHHHHHHTTCSBCCHHHHHHHHH
T ss_pred hccccccchHHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHHhCCCCccHHHHHHHHHHHHHHHcCCCcCCHHHHHHHHH
Confidence 0000000000000000011115899999999888654 2 6799999998887777666667899999999998
Q ss_pred HHHHH
Q 010366 493 YKVAE 497 (512)
Q Consensus 493 ~~~~~ 497 (512)
....+
T Consensus 321 ~~l~~ 325 (350)
T 1g8p_A 321 MALSH 325 (350)
T ss_dssp HHHGG
T ss_pred HHHhh
Confidence 87654
No 57
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=99.77 E-value=8.8e-18 Score=176.69 Aligned_cols=222 Identities=13% Similarity=0.170 Sum_probs=145.7
Q ss_pred ccCCCCCCccc-cChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCC
Q 010366 232 SKNGNGFGDVI-LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVA 305 (512)
Q Consensus 232 ~~~~~~~~~vv-g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~ 305 (512)
..+..+|++++ |..... .+..+...... ++. +.+++||||||||||++|+++++.+ +.+++++++..+.
T Consensus 98 l~~~~tfd~fv~g~~n~~-a~~~~~~~a~~---~~~-~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~~~~~ 172 (440)
T 2z4s_A 98 LNPDYTFENFVVGPGNSF-AYHAALEVAKH---PGR-YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITSEKFL 172 (440)
T ss_dssp CCTTCSGGGCCCCTTTHH-HHHHHHHHHHS---TTS-SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEHHHHH
T ss_pred CCCCCChhhcCCCCchHH-HHHHHHHHHhC---CCC-CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeHHHHH
Confidence 35566899998 544332 33333322222 222 4579999999999999999999988 7889999876542
Q ss_pred CCchhHHHHHHH--HHHHHHhcC-CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC-
Q 010366 306 PLGPQAVTKIHQ--LFDWAKKSK-RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD- 381 (512)
Q Consensus 306 ~~~~~~~~~l~~--lf~~a~~~~-~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~- 381 (512)
. .....+.. ......... .++||||||++.+.... ..+..+..++..+. ..+..+||+|.+.+..
T Consensus 173 ~---~~~~~~~~~~~~~~~~~~~~~~~vL~IDEi~~l~~~~-------~~q~~l~~~l~~l~-~~~~~iIitt~~~~~~l 241 (440)
T 2z4s_A 173 N---DLVDSMKEGKLNEFREKYRKKVDILLIDDVQFLIGKT-------GVQTELFHTFNELH-DSGKQIVICSDREPQKL 241 (440)
T ss_dssp H---HHHHHHHTTCHHHHHHHHTTTCSEEEEECGGGGSSCH-------HHHHHHHHHHHHHH-TTTCEEEEEESSCGGGC
T ss_pred H---HHHHHHHcccHHHHHHHhcCCCCEEEEeCcccccCCh-------HHHHHHHHHHHHHH-HCCCeEEEEECCCHHHH
Confidence 1 11111110 001111223 47899999999985321 22333434443332 1233444444444443
Q ss_pred --CCHHHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCC
Q 010366 382 --LDSAVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEG 457 (512)
Q Consensus 382 --l~~al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g 457 (512)
+++.+.+||. .++.+++|+.+++..|+...+..... .++++.+..|+..+.|
T Consensus 242 ~~l~~~L~sR~~~g~~i~l~~p~~e~r~~iL~~~~~~~~~------------------------~i~~e~l~~la~~~~g 297 (440)
T 2z4s_A 242 SEFQDRLVSRFQMGLVAKLEPPDEETRKSIARKMLEIEHG------------------------ELPEEVLNFVAENVDD 297 (440)
T ss_dssp SSCCHHHHHHHHSSBCCBCCCCCHHHHHHHHHHHHHHHTC------------------------CCCTTHHHHHHHHCCS
T ss_pred HHHHHHHHhhccCCeEEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHhcCC
Confidence 8899999996 78999999999999999988865321 2778889999999876
Q ss_pred CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 458 FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 458 ~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
++|++..++..+.+.+...+ ..||.+++.+++....
T Consensus 298 -n~R~l~~~L~~~~~~a~~~~-~~It~~~~~~~l~~~~ 333 (440)
T 2z4s_A 298 -NLRRLRGAIIKLLVYKETTG-KEVDLKEAILLLKDFI 333 (440)
T ss_dssp -CHHHHHHHHHHHHHHHHHSS-SCCCHHHHHHHTSTTT
T ss_pred -CHHHHHHHHHHHHHHHHHhC-CCCCHHHHHHHHHHHh
Confidence 89999999976666554333 4699999999987654
No 58
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.77 E-value=1.7e-17 Score=170.79 Aligned_cols=215 Identities=16% Similarity=0.177 Sum_probs=151.5
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----------CCCeEEEeCCCCC-C
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----------GLDYALMTGGDVA-P 306 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----------~~~~~~v~~~~~~-~ 306 (512)
++++|.+...+.+...+..... +.++++++|+||||||||++|+++++.+ +.++++++|.... .
T Consensus 20 ~~l~gr~~~~~~l~~~l~~~~~----~~~~~~vll~G~~G~GKT~la~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 95 (384)
T 2qby_B 20 KEIPFREDILRDAAIAIRYFVK----NEVKFSNLFLGLTGTGKTFVSKYIFNEIEEVKKEDEEYKDVKQAYVNCREVGGT 95 (384)
T ss_dssp SSCTTCHHHHHHHHHHHHHHHT----TCCCCEEEEEECTTSSHHHHHHHHHHHHHHHHHHSSSSTTCEEEEEEHHHHCSC
T ss_pred CCCCChHHHHHHHHHHHHHHHc----CCCCCcEEEECCCCCCHHHHHHHHHHHHHHHhhhhcCCCCceEEEEECccCCCC
Confidence 8899999999988776644322 2334589999999999999999999987 8899999976543 1
Q ss_pred C-------------------chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHH-HHHHHHHcCCC
Q 010366 307 L-------------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSA-LNALLFRTGDQ 366 (512)
Q Consensus 307 ~-------------------~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~-l~~ll~~~~~~ 366 (512)
. +......+..++..+.. . +.+|||||+|.+..... ... +..++...
T Consensus 96 ~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~l~~~l~~-~-~~vlilDEi~~l~~~~~--------~~~~l~~l~~~~--- 162 (384)
T 2qby_B 96 PQAVLSSLAGKLTGFSVPKHGINLGEYIDKIKNGTRN-I-RAIIYLDEVDTLVKRRG--------GDIVLYQLLRSD--- 162 (384)
T ss_dssp HHHHHHHHHHHHHCSCCCSSSSCTHHHHHHHHHHHSS-S-CEEEEEETTHHHHHSTT--------SHHHHHHHHTSS---
T ss_pred HHHHHHHHHHHhcCCCCCCCCCCHHHHHHHHHHHhcc-C-CCEEEEECHHHhccCCC--------CceeHHHHhcCC---
Confidence 0 11111223333333332 2 33999999999853210 223 44454332
Q ss_pred CCCEEEEEeeCCC---CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 367 SKDIVLALATNRP---GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 367 ~~~viiI~ttN~~---~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
.++.||+|||.+ ..+++.+.+||...+.|++|+.+++..|+..++...... ..+
T Consensus 163 -~~~~iI~~t~~~~~~~~l~~~l~sr~~~~i~l~~l~~~~~~~il~~~~~~~~~~----------------------~~~ 219 (384)
T 2qby_B 163 -ANISVIMISNDINVRDYMEPRVLSSLGPSVIFKPYDAEQLKFILSKYAEYGLIK----------------------GTY 219 (384)
T ss_dssp -SCEEEEEECSSTTTTTTSCHHHHHTCCCEEEECCCCHHHHHHHHHHHHHHTSCT----------------------TSC
T ss_pred -cceEEEEEECCCchHhhhCHHHHhcCCCeEEECCCCHHHHHHHHHHHHHhhccc----------------------CCc
Confidence 788999999987 678999999997899999999999999999988631100 127
Q ss_pred CHHHHHHHHHHcCC--CcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 444 TDDILMEAAAKTEG--FSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 444 ~~~~l~~la~~t~g--~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
+++.+..++..+.+ .+++.+..++..+...+. +...|+.+++..+++...
T Consensus 220 ~~~~~~~i~~~~~~~~G~~r~a~~~l~~a~~~a~--~~~~i~~~~v~~~~~~~~ 271 (384)
T 2qby_B 220 DDEILSYIAAISAKEHGDARKAVNLLFRAAQLAS--GGGIIRKEHVDKAIVDYE 271 (384)
T ss_dssp CSHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHTT--SSSCCCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHhc--CCCccCHHHHHHHHHHHh
Confidence 78889999988862 256666666654444433 447899999999998765
No 59
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=99.77 E-value=4.1e-18 Score=175.66 Aligned_cols=238 Identities=16% Similarity=0.204 Sum_probs=144.9
Q ss_pred CccccChHHHHHHHHHHH----Hhhc-h-----------------hhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCe
Q 010366 239 GDVILHPSLQKRIRQLSG----ATAN-T-----------------KAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDY 296 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~----~~~~-~-----------------~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~ 296 (512)
+.|+|++.+++.+...+. .... . .....+..++||+||||||||++|+++|+.++.++
T Consensus 21 ~~viGq~~ak~~l~~~~~~~~~~~~~g~~~~~~~~~~~~~p~~~~~~~~~~~~~ill~Gp~GtGKT~la~~la~~l~~~~ 100 (376)
T 1um8_A 21 NYVIGQEQAKKVFSVAVYNHYKRLSFKEKLKKQDNQDSNVELEHLEEVELSKSNILLIGPTGSGKTLMAQTLAKHLDIPI 100 (376)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCE
T ss_pred hHccCcHHHHHHHHHHHHHHHHHHHhhhhhhhccccccccccccccccccCCCCEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 568999999999976552 1110 0 01223456899999999999999999999999999
Q ss_pred EEEeCCCCCCC---chhHHHHHHHHHHHHH---hcCCCcEEEEccchhhhhhcccCCC-----CHHHHHHHHHHHHHcC-
Q 010366 297 ALMTGGDVAPL---GPQAVTKIHQLFDWAK---KSKRGLLLFIDEADAFLCERNKTYM-----SEAQRSALNALLFRTG- 364 (512)
Q Consensus 297 ~~v~~~~~~~~---~~~~~~~l~~lf~~a~---~~~~~~vl~lDEid~l~~~~~~~~~-----~~~~~~~l~~ll~~~~- 364 (512)
+.+++..+... +......+..++..+. ....++||||||+|.+...+..... .......|..+++...
T Consensus 101 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~vl~iDEi~~l~~~~~~~~~~~~~~~~~~~~~Ll~~le~~~~ 180 (376)
T 1um8_A 101 AISDATSLTEAGYVGEDVENILTRLLQASDWNVQKAQKGIVFIDEIDKISRLSENRSITRDVSGEGVQQALLKIVEGSLV 180 (376)
T ss_dssp EEEEGGGCC--------CTHHHHHHHHHTTTCHHHHTTSEEEEETGGGC--------------CHHHHHHHHHHHHCCEE
T ss_pred EEecchhhhhcCcCCccHHHHHHHHHhhccchhhhcCCeEEEEcCHHHHhhhcCCCceecccchHHHHHHHHHHhhccce
Confidence 99999887532 1111223344443221 1124789999999998765332110 1123444444443210
Q ss_pred -----------------CCCCCEEEEEeeCC-----------------------------------------CCCCCHHH
Q 010366 365 -----------------DQSKDIVLALATNR-----------------------------------------PGDLDSAV 386 (512)
Q Consensus 365 -----------------~~~~~viiI~ttN~-----------------------------------------~~~l~~al 386 (512)
-...++++|+|+|. ...+.|+|
T Consensus 181 ~~~~~~~~~~~~~~~~~i~t~n~~~I~~~~~~~l~~~l~~R~~~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~~~~p~l 260 (376)
T 1um8_A 181 NIPPKGGRKHPEGNFIQIDTSDILFICAGAFDGLAEIIKKRTTQNVLGFTQEKMSKKEQEAILHLVQTHDLVTYGLIPEL 260 (376)
T ss_dssp C---------------CEECTTCEEEEEECCTTHHHHTTTSCSSCCCSCCCSSCCTTTTTTSGGGCCHHHHHHTTCCHHH
T ss_pred ecccccccccCCcceEEEecCCeEEEecCCHHHHHHHHHHHhcccccCCCchhhhccchhHHHhhcCHHHHhhcCCChHH
Confidence 01245678888762 11367999
Q ss_pred HccccceeecCCCCHHHHHHHHHH----HHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC--CCcH
Q 010366 387 ADRIDEVLEFPLPGQEERFKLLKL----YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE--GFSG 460 (512)
Q Consensus 387 ~~R~~~~i~~~~p~~~er~~Il~~----~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~--g~s~ 460 (512)
.+||+.++.|++++.++...|+.. ++..+... +... +.. ..++++++..|+.... ....
T Consensus 261 ~~R~~~~i~~~~l~~~~l~~i~~~~~~~~~~~~~~~------------~~~~--~~~-~~~~~~a~~~l~~~~~~~~~~~ 325 (376)
T 1um8_A 261 IGRLPVLSTLDSISLEAMVDILQKPKNALIKQYQQL------------FKMD--EVD-LIFEEEAIKEIAQLALERKTGA 325 (376)
T ss_dssp HTTCCEEEECCCCCHHHHHHHHHSSTTCHHHHHHHH------------HHTT--TCE-EEECHHHHHHHHHHHHHTTCTG
T ss_pred hcCCCceeeccCCCHHHHHHHHhhhHHHHHHHHHHH------------Hhhc--Cce-EEECHHHHHHHHHHhcccccCc
Confidence 999999999999999999999973 33322111 0000 011 1378999999998854 3578
Q ss_pred HHHHHHHHHHHHH-HhC-----CCCCccCHHHHHHHH
Q 010366 461 REIAKLMASVQAA-VYG-----SENCVLDPSLFREVV 491 (512)
Q Consensus 461 ~dI~~lv~~~~aa-~~~-----~~~~~it~e~~~~al 491 (512)
|++..++..+... ... .....||.+++.++.
T Consensus 326 R~L~~~le~~~~~~~~~~~~~~~~~~~i~~~~v~~~~ 362 (376)
T 1um8_A 326 RGLRAIIEDFCLDIMFDLPKLKGSEVRITKDCVLKQA 362 (376)
T ss_dssp GGHHHHHHHHHHHHHHTGGGGTTSEEEECHHHHTTSS
T ss_pred HHHHHHHHHHHHHHHhhccCCCCCEEEEeHHHhcCCC
Confidence 9999988544332 111 122358999887644
No 60
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=99.76 E-value=6e-18 Score=170.74 Aligned_cols=221 Identities=16% Similarity=0.179 Sum_probs=140.0
Q ss_pred cCCCCCCccc-cChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCc
Q 010366 233 KNGNGFGDVI-LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLG 308 (512)
Q Consensus 233 ~~~~~~~~vv-g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~ 308 (512)
.+..+|++++ |+.. ...+..+...... ++..+.+++|+||||||||++|+++++.+ +.+++++++.++....
T Consensus 5 ~~~~~f~~fv~g~~~-~~a~~~~~~~~~~---~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~~~~~~~~ 80 (324)
T 1l8q_A 5 NPKYTLENFIVGEGN-RLAYEVVKEALEN---LGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSADDFAQAM 80 (324)
T ss_dssp CTTCCSSSCCCCTTT-HHHHHHHHHHHHT---TTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEHHHHHHHH
T ss_pred CCCCCcccCCCCCcH-HHHHHHHHHHHhC---cCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEHHHHHHHH
Confidence 4567799998 5433 2223222222222 22234579999999999999999999998 8999999876542110
Q ss_pred hhHH-HHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC---CCCH
Q 010366 309 PQAV-TKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG---DLDS 384 (512)
Q Consensus 309 ~~~~-~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~---~l~~ 384 (512)
.... ......|.... ..+++|||||++.+.... ..+..+..++.... .....+|+++++.+. .+++
T Consensus 81 ~~~~~~~~~~~~~~~~--~~~~vL~iDEi~~l~~~~-------~~~~~l~~~l~~~~-~~~~~iii~~~~~~~~l~~l~~ 150 (324)
T 1l8q_A 81 VEHLKKGTINEFRNMY--KSVDLLLLDDVQFLSGKE-------RTQIEFFHIFNTLY-LLEKQIILASDRHPQKLDGVSD 150 (324)
T ss_dssp HHHHHHTCHHHHHHHH--HTCSEEEEECGGGGTTCH-------HHHHHHHHHHHHHH-HTTCEEEEEESSCGGGCTTSCH
T ss_pred HHHHHcCcHHHHHHHh--cCCCEEEEcCcccccCCh-------HHHHHHHHHHHHHH-HCCCeEEEEecCChHHHHHhhh
Confidence 0000 00011122121 237899999999974321 22333333433321 123345555555554 6899
Q ss_pred HHHcccc--ceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHH
Q 010366 385 AVADRID--EVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGRE 462 (512)
Q Consensus 385 al~~R~~--~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~d 462 (512)
++.+||. .++.|++ +.+++..|+...+..... .++++.++.|+..+ | +.++
T Consensus 151 ~L~sR~~~~~~i~l~~-~~~e~~~il~~~~~~~~~------------------------~l~~~~l~~l~~~~-g-~~r~ 203 (324)
T 1l8q_A 151 RLVSRFEGGILVEIEL-DNKTRFKIIKEKLKEFNL------------------------ELRKEVIDYLLENT-K-NVRE 203 (324)
T ss_dssp HHHHHHHTSEEEECCC-CHHHHHHHHHHHHHHTTC------------------------CCCHHHHHHHHHHC-S-SHHH
T ss_pred HhhhcccCceEEEeCC-CHHHHHHHHHHHHHhcCC------------------------CCCHHHHHHHHHhC-C-CHHH
Confidence 9999996 6789999 999999999998865321 28899999999999 5 7888
Q ss_pred HHHHHHHHHHHH---h-CCCCCcc-CHHHHHHHHHHH
Q 010366 463 IAKLMASVQAAV---Y-GSENCVL-DPSLFREVVDYK 494 (512)
Q Consensus 463 I~~lv~~~~aa~---~-~~~~~~i-t~e~~~~al~~~ 494 (512)
+..++..+.+.. . ......| |.+++.+++..+
T Consensus 204 l~~~l~~~~~~~~~~l~~~~~~~i~t~~~i~~~~~~~ 240 (324)
T 1l8q_A 204 IEGKIKLIKLKGFEGLERKERKERDKLMQIVEFVANY 240 (324)
T ss_dssp HHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCHHHhccccccCCCCHHHHHHHHHHH
Confidence 888876554440 0 0112457 888888877654
No 61
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=1.5e-18 Score=186.27 Aligned_cols=220 Identities=16% Similarity=0.203 Sum_probs=143.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchh-----h----cCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTK-----A----HNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGG 302 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~-----~----~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~ 302 (512)
++.+.+|++++|++..++.+...+....... . +..+++++||+||||||||++|+++|+.++.+++.++++
T Consensus 32 kyrP~~~~dliG~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 32 KYAPTNLQQVCGNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 5778889999999999999987765432211 1 112457899999999999999999999999999999998
Q ss_pred CCCCCchhHHHH---------HHHHHHHH----HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCC
Q 010366 303 DVAPLGPQAVTK---------IHQLFDWA----KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD 369 (512)
Q Consensus 303 ~~~~~~~~~~~~---------l~~lf~~a----~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 369 (512)
+...... .... +..+|..+ .....++||||||+|.+..... .....+..++.. ....
T Consensus 112 ~~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~vliIDEid~l~~~~~------~~l~~L~~~l~~---~~~~ 181 (516)
T 1sxj_A 112 DVRSKTL-LNAGVKNALDNMSVVGYFKHNEEAQNLNGKHFVIIMDEVDGMSGGDR------GGVGQLAQFCRK---TSTP 181 (516)
T ss_dssp SCCCHHH-HHHTGGGGTTBCCSTTTTTC----CCSSTTSEEEEECSGGGCCTTST------THHHHHHHHHHH---CSSC
T ss_pred CcchHHH-HHHHHHHHhccccHHHHHhhhhhhhhccCCCeEEEEECCCccchhhH------HHHHHHHHHHHh---cCCC
Confidence 7654110 0000 11112211 1124478999999999854321 112334444433 2334
Q ss_pred EEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHH
Q 010366 370 IVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILM 449 (512)
Q Consensus 370 viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 449 (512)
+++|+++.....+ +.+.+|+ ..+.|++|+.+++..++...+..... .++++.+.
T Consensus 182 iIli~~~~~~~~l-~~l~~r~-~~i~f~~~~~~~~~~~L~~i~~~~~~------------------------~i~~~~l~ 235 (516)
T 1sxj_A 182 LILICNERNLPKM-RPFDRVC-LDIQFRRPDANSIKSRLMTIAIREKF------------------------KLDPNVID 235 (516)
T ss_dssp EEEEESCTTSSTT-GGGTTTS-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CCCTTHHH
T ss_pred EEEEEcCCCCccc-hhhHhce-EEEEeCCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHH
Confidence 4444433333334 3455565 79999999999999999887765322 17778899
Q ss_pred HHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 450 EAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 450 ~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
.|+..+.| +++.+++.++.++... ..|+.+++..++..
T Consensus 236 ~la~~s~G----diR~~i~~L~~~~~~~--~~It~~~v~~~~~~ 273 (516)
T 1sxj_A 236 RLIQTTRG----DIRQVINLLSTISTTT--KTINHENINEISKA 273 (516)
T ss_dssp HHHHHTTT----CHHHHHHHHTHHHHHS--SCCCTTHHHHHHHH
T ss_pred HHHHHcCC----cHHHHHHHHHHHHhcC--CCCchHHHHHHHHh
Confidence 99998865 4444444444444433 57888888888764
No 62
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.76 E-value=2.6e-17 Score=165.01 Aligned_cols=205 Identities=18% Similarity=0.207 Sum_probs=147.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~ 306 (512)
++.+..|++++|++.....+...+. .+.++ +++|+||||||||++|+++++.+ +.+++.+++++...
T Consensus 14 ~~~p~~~~~~~g~~~~~~~l~~~l~-------~~~~~-~~ll~G~~G~GKt~la~~l~~~l~~~~~~~~~~~~~~~~~~~ 85 (323)
T 1sxj_B 14 KYRPQVLSDIVGNKETIDRLQQIAK-------DGNMP-HMIISGMPGIGKTTSVHCLAHELLGRSYADGVLELNASDDRG 85 (323)
T ss_dssp HTCCSSGGGCCSCTHHHHHHHHHHH-------SCCCC-CEEEECSTTSSHHHHHHHHHHHHHGGGHHHHEEEECTTSCCS
T ss_pred hcCCCCHHHHHCCHHHHHHHHHHHH-------cCCCC-eEEEECcCCCCHHHHHHHHHHHhcCCcccCCEEEecCccccC
Confidence 4677789999999999998876652 12232 49999999999999999999986 34577888765322
Q ss_pred CchhHHHHHHHHHHHHHh------cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKK------SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG 380 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~------~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~ 380 (512)
...+..++..... ..++.||+|||+|.+. ... .+.|+..++..+.++++|++||.+.
T Consensus 86 -----~~~i~~~~~~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~---~~~L~~~le~~~~~~~~il~~~~~~ 148 (323)
T 1sxj_B 86 -----IDVVRNQIKHFAQKKLHLPPGKHKIVILDEADSMT---------AGA---QQALRRTMELYSNSTRFAFACNQSN 148 (323)
T ss_dssp -----HHHHHTHHHHHHHBCCCCCTTCCEEEEEESGGGSC---------HHH---HHTTHHHHHHTTTTEEEEEEESCGG
T ss_pred -----hHHHHHHHHHHHhccccCCCCCceEEEEECcccCC---------HHH---HHHHHHHHhccCCCceEEEEeCChh
Confidence 2334444444331 1236799999999972 222 3334444444567889999999999
Q ss_pred CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcH
Q 010366 381 DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSG 460 (512)
Q Consensus 381 ~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~ 460 (512)
.+.+.+.+|+ ..+.|++|+.+++..++...+..... .++++.+..++..+.| ++
T Consensus 149 ~l~~~l~sr~-~~i~~~~~~~~~~~~~l~~~~~~~~~------------------------~~~~~~~~~l~~~~~G-~~ 202 (323)
T 1sxj_B 149 KIIEPLQSQC-AILRYSKLSDEDVLKRLLQIIKLEDV------------------------KYTNDGLEAIIFTAEG-DM 202 (323)
T ss_dssp GSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTC------------------------CBCHHHHHHHHHHHTT-CH
T ss_pred hchhHHHhhc-eEEeecCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CH
Confidence 9999999999 59999999999999999988765321 2788899999999866 56
Q ss_pred HHHHHHHHHHHHHHhCCCCCccCHHHHHHHHH
Q 010366 461 REIAKLMASVQAAVYGSENCVLDPSLFREVVD 492 (512)
Q Consensus 461 ~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~ 492 (512)
+.+..++..+... . ..+|.+++.+++.
T Consensus 203 r~a~~~l~~~~~~---~--~~i~~~~v~~~~~ 229 (323)
T 1sxj_B 203 RQAINNLQSTVAG---H--GLVNADNVFKIVD 229 (323)
T ss_dssp HHHHHHHHHHHHH---H--SSBCHHHHHHHHT
T ss_pred HHHHHHHHHHHhc---C--CCcCHHHHHHHHC
Confidence 6655555433221 1 4688888877764
No 63
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=99.75 E-value=4.3e-17 Score=167.23 Aligned_cols=228 Identities=17% Similarity=0.172 Sum_probs=157.8
Q ss_pred CCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh------CCCeEEEeCCCCCC-
Q 010366 234 NGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS------GLDYALMTGGDVAP- 306 (512)
Q Consensus 234 ~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l------~~~~~~v~~~~~~~- 306 (512)
+...+++++|.+...+.+...+.... .+.++.+++|+||||||||++++.++..+ +.+++++++.....
T Consensus 15 ~~~~p~~~~gr~~e~~~l~~~l~~~~----~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~~~~~~~~ 90 (386)
T 2qby_A 15 PDYIPDELPHREDQIRKIASILAPLY----REEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYINTRQIDTP 90 (386)
T ss_dssp SSCCCSCCTTCHHHHHHHHHSSGGGG----GTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEEHHHHCSH
T ss_pred CccCCCCCCChHHHHHHHHHHHHHHH----cCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEECCCCCCH
Confidence 34456899999998888866543211 12344589999999999999999999988 88899998643211
Q ss_pred -----------------CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC-CCC
Q 010366 307 -----------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD-QSK 368 (512)
Q Consensus 307 -----------------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~-~~~ 368 (512)
.+.........++........+.+|+|||++.+..... ...+..++..++. ...
T Consensus 91 ~~~~~~i~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~vlilDE~~~l~~~~~--------~~~l~~l~~~~~~~~~~ 162 (386)
T 2qby_A 91 YRVLADLLESLDVKVPFTGLSIAELYRRLVKAVRDYGSQVVIVLDEIDAFVKKYN--------DDILYKLSRINSEVNKS 162 (386)
T ss_dssp HHHHHHHTTTTSCCCCSSSCCHHHHHHHHHHHHHTCCSCEEEEEETHHHHHHSSC--------STHHHHHHHHHHSCCC-
T ss_pred HHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHhccCCeEEEEEcChhhhhccCc--------CHHHHHHhhchhhcCCC
Confidence 11112233444555555444478999999999854321 1234445444432 355
Q ss_pred CEEEEEeeCCC---CCCCHHHHccccc-eeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 369 DIVLALATNRP---GDLDSAVADRIDE-VLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 369 ~viiI~ttN~~---~~l~~al~~R~~~-~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
++.+|++||.+ ..+++.+.+||.. .+.|++|+.++...++...+...... ..++
T Consensus 163 ~~~~I~~~~~~~~~~~~~~~~~~r~~~~~i~l~~l~~~~~~~il~~~~~~~~~~----------------------~~~~ 220 (386)
T 2qby_A 163 KISFIGITNDVKFVDLLDPRVKSSLSEEEIIFPPYNAEELEDILTKRAQMAFKP----------------------GVLP 220 (386)
T ss_dssp -EEEEEEESCGGGGGGCTTHHHHTTTTEEEEECCCCHHHHHHHHHHHHHHHBCS----------------------SCSC
T ss_pred eEEEEEEECCCChHhhhCHHHhccCCCeeEEeCCCCHHHHHHHHHHHHHhhccC----------------------CCCC
Confidence 78899999876 4688899999864 89999999999999999887543210 1378
Q ss_pred HHHHHHHHHHcC---CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHH
Q 010366 445 DDILMEAAAKTE---GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 445 ~~~l~~la~~t~---g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~ 496 (512)
++.+..++..+. | +++.+..++..+...+...+...||.+++..++.....
T Consensus 221 ~~~~~~l~~~~~~~~G-~~r~~~~ll~~a~~~a~~~~~~~i~~~~v~~a~~~~~~ 274 (386)
T 2qby_A 221 DNVIKLCAALAAREHG-DARRALDLLRVSGEIAERMKDTKVKEEYVYMAKEEIER 274 (386)
T ss_dssp HHHHHHHHHHHHHTTC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcC-CHHHHHHHHHHHHHHHHhcCCCccCHHHHHHHHHHHhh
Confidence 888999988876 5 67777777765554444445578999999999877653
No 64
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=99.74 E-value=2.1e-18 Score=158.83 Aligned_cols=161 Identities=19% Similarity=0.237 Sum_probs=115.4
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 302 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~ 302 (512)
..+..|++++|.++....+...+.. ..+.+++|+||||||||++|+++++.+ +.+++.+++.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~~ll~G~~G~GKT~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (195)
T 1jbk_A 16 AEQGKLDPVIGRDEEIRRTIQVLQR--------RTKNNPVLIGEPGVGKTAIVEGLAQRIINGEVPEGLKGRRVLALDMG 87 (195)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEECCTTSCHHHHHHHHHHHHHHTCSCGGGTTCEEEEECHH
T ss_pred HhhccccccccchHHHHHHHHHHhc--------CCCCceEEECCCCCCHHHHHHHHHHHHHhCCCchhhcCCcEEEeeHH
Confidence 4456799999999888777654321 223579999999999999999999986 6778888875
Q ss_pred CCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 303 DVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 303 ~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.+. ...+.....+..++..+.....++||||||+|.+........ .......+..++ ...++.+|++||.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~-~~~~~~~l~~~~-----~~~~~~~i~~~~~~ 161 (195)
T 1jbk_A 88 ALVAGAKYRGEFEERLKGVLNDLAKQEGNVILFIDELHTMVGAGKADG-AMDAGNMLKPAL-----ARGELHCVGATTLD 161 (195)
T ss_dssp HHHTTTCSHHHHHHHHHHHHHHHHHSTTTEEEEEETGGGGTT-------CCCCHHHHHHHH-----HTTSCCEEEEECHH
T ss_pred HHhccCCccccHHHHHHHHHHHHhhcCCCeEEEEeCHHHHhccCcccc-hHHHHHHHHHhh-----ccCCeEEEEeCCHH
Confidence 542 234445566777777666666678999999999865432211 112233444444 23467888888876
Q ss_pred C-----CCCHHHHccccceeecCCCCHHHHHHHH
Q 010366 380 G-----DLDSAVADRIDEVLEFPLPGQEERFKLL 408 (512)
Q Consensus 380 ~-----~l~~al~~R~~~~i~~~~p~~~er~~Il 408 (512)
. .+++++.+||. .+.|++|+.+++.+|+
T Consensus 162 ~~~~~~~~~~~l~~r~~-~i~~~~p~~~~~~~il 194 (195)
T 1jbk_A 162 EYRQYIEKDAALERRFQ-KVFVAEPSVEDTIAIL 194 (195)
T ss_dssp HHHHHTTTCHHHHTTEE-EEECCCCCHHHHHTTC
T ss_pred HHHHHHhcCHHHHHHhc-eeecCCCCHHHHHHHh
Confidence 5 78999999996 7999999999998875
No 65
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=99.74 E-value=7.7e-17 Score=167.84 Aligned_cols=241 Identities=19% Similarity=0.268 Sum_probs=152.4
Q ss_pred CccccChHHHHHHHHHHHHh-hchh-----hcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCC--Cch-
Q 010366 239 GDVILHPSLQKRIRQLSGAT-ANTK-----AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAP--LGP- 309 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~-~~~~-----~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~--~~~- 309 (512)
++|+|++++++.+...+... .... ....+++++||+||||||||++|+++|..++.+|+.++++.+.. +.+
T Consensus 15 ~~IvGqe~ak~~l~~av~~~~~r~~~~~~~~~~~~~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~~~~~~~g~vG~ 94 (444)
T 1g41_A 15 QHIIGQADAKRAVAIALRNRWRRMQLQEPLRHEVTPKNILMIGPTGVGKTEIARRLAKLANAPFIKVEATKFTEVGYVGK 94 (444)
T ss_dssp TTCCSCHHHHHHHHHHHHHHHHHHHSCTTTTTTCCCCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEGGGGC----CCC
T ss_pred HHhCCHHHHHHHHHHHHHHHHhhhccccccccccCCceEEEEcCCCCCHHHHHHHHHHHcCCCceeecchhhcccceeec
Confidence 67999999999996655321 1111 11235679999999999999999999999999999999876644 222
Q ss_pred hHHHHHHHHHHHHH------------------------------------------------------------------
Q 010366 310 QAVTKIHQLFDWAK------------------------------------------------------------------ 323 (512)
Q Consensus 310 ~~~~~l~~lf~~a~------------------------------------------------------------------ 323 (512)
+....+..+|..+.
T Consensus 95 d~e~~lr~lf~~a~~~~~~De~d~~~~~~~~~~e~rvl~~LL~~~dg~~~~~~v~a~~TN~~~~ld~aL~rggr~D~~i~ 174 (444)
T 1g41_A 95 EVDSIIRDLTDSAMKLVRQQEIAKNRARAEDVAEERILDALLPPAKNQWGEVENHDSHSSTRQAFRKKLREGQLDDKEIE 174 (444)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHSCC------------------------------------------------------
T ss_pred cHHHHHHHHHHHHHhcchhhhhhhhhccchhhHHHHHHHHHHHHhhccccccccccccccCHHHHHHHHHcCCCcceEEE
Confidence 23334443333220
Q ss_pred -----------------------------------------------------------------------hc-CCCcEE
Q 010366 324 -----------------------------------------------------------------------KS-KRGLLL 331 (512)
Q Consensus 324 -----------------------------------------------------------------------~~-~~~~vl 331 (512)
.. .+.++|
T Consensus 175 i~lP~~~~~~~ei~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~v~~a~~~l~~~e~~~l~~~~~~~~~ai~~ae~~~il 254 (444)
T 1g41_A 175 IDVSAGVSMGVEIMAPPGMEEMTNQLQSLFQNLGSDKTKKRKMKIKDALKALIDDEAAKLINPEELKQKAIDAVEQNGIV 254 (444)
T ss_dssp ---------------------------------------------------CCGGGSCSSCCHHHHHHHHHHHHHHHCEE
T ss_pred EcCCCCccchhhhhcCCChHHHHHHHHHHHHhhcCCCCcceeeeHHHHHHHHHHHHHHHccCHHHHHHHHHHHhccCCee
Confidence 00 024589
Q ss_pred EEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC----------CCCCEEEEEee----CCCCCCCHHHHccccceeecC
Q 010366 332 FIDEADAFLCERNKTYMSEAQRSALNALLFRTGD----------QSKDIVLALAT----NRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 332 ~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~----------~~~~viiI~tt----N~~~~l~~al~~R~~~~i~~~ 397 (512)
++||||++..+..+.........+...||..++. +..+++||+|. +.+..+.|+|++||+.++.|+
T Consensus 255 ~~DEidki~~~~~~~~~D~s~egvq~aLL~~le~~~~~~~~~~~d~~~ilfI~~gaf~~~~~~dlipel~~R~~i~i~l~ 334 (444)
T 1g41_A 255 FIDEIDKICKKGEYSGADVSREGVQRDLLPLVEGSTVSTKHGMVKTDHILFIASGAFQVARPSDLIPELQGRLPIRVELT 334 (444)
T ss_dssp EEETGGGGSCCSSCSSSHHHHHHHHHHHHHHHHCCEEEETTEEEECTTCEEEEEECCSSCCGGGSCHHHHTTCCEEEECC
T ss_pred eHHHHHHHhhccCCCCCCchHHHHHHHHHHHhcccccccccceecCCcEEEEeccccccCChhhcchHHhcccceeeeCC
Confidence 9999999986643222111222244555555542 45678999987 234456699999999999999
Q ss_pred CCCHHHHHHHHH---H-HHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH-------cCCCcHHHHHHH
Q 010366 398 LPGQEERFKLLK---L-YLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK-------TEGFSGREIAKL 466 (512)
Q Consensus 398 ~p~~~er~~Il~---~-~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~-------t~g~s~~dI~~l 466 (512)
.++.++...|+. . .+.++... +......+ .++++++..|+.. +...-+|-++.+
T Consensus 335 ~lt~~e~~~Il~~~~~~l~~q~~~~------------~~~~~~~l---~~~~~al~~i~~~a~~~~~~t~~~GaR~L~~~ 399 (444)
T 1g41_A 335 ALSAADFERILTEPHASLTEQYKAL------------MATEGVNI---AFTTDAVKKIAEAAFRVNEKTENIGARRLHTV 399 (444)
T ss_dssp CCCHHHHHHHHHSSTTCHHHHHHHH------------HHTTTCEE---EECHHHHHHHHHHHHHHHHHSCCCGGGHHHHH
T ss_pred CCCHHHHHHHHHHHHHhHHHHHHHH------------hcccCceE---EECHHHHHHHHHHHHHhccCCccCCchHHHHH
Confidence 999999999994 2 22222111 11111111 3789999998874 455566777776
Q ss_pred HHHHH-HHHh----C-CCCCccCHHHHHHHHHHH
Q 010366 467 MASVQ-AAVY----G-SENCVLDPSLFREVVDYK 494 (512)
Q Consensus 467 v~~~~-aa~~----~-~~~~~it~e~~~~al~~~ 494 (512)
+..+. ..++ . .....||.+.+.+.+...
T Consensus 400 ie~~~~~~~~~~~~~~~~~~~i~~~~v~~~l~~~ 433 (444)
T 1g41_A 400 MERLMDKISFSASDMNGQTVNIDAAYVADALGEV 433 (444)
T ss_dssp HHHHHHHHHHHGGGCTTCEEEECHHHHHHHHTTT
T ss_pred HHHHHHHHHhhccccCCCeEEEeHHHHHHhcCcc
Confidence 63222 1111 1 222568999998877543
No 66
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=99.73 E-value=6.2e-17 Score=181.69 Aligned_cols=227 Identities=18% Similarity=0.138 Sum_probs=158.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 302 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~ 302 (512)
..+..|+++||.+.....+..++. .....++||+||||||||++|+++|..+ +..++.++++
T Consensus 180 ~~~~~~d~~iGr~~~i~~l~~~l~--------~~~~~~vlL~G~~GtGKT~la~~la~~l~~~~v~~~~~~~~~~~~~~~ 251 (758)
T 1r6b_X 180 ARVGGIDPLIGREKELERAIQVLC--------RRRKNNPLLVGESGVGKTAIAEGLAWRIVQGDVPEVMADCTIYSLDIG 251 (758)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHT--------SSSSCEEEEECCTTSSHHHHHHHHHHHHHHTCSCGGGTTCEEEECCCC
T ss_pred HhcCCCCCccCCHHHHHHHHHHHh--------ccCCCCeEEEcCCCCCHHHHHHHHHHHHHhCCCChhhcCCEEEEEcHH
Confidence 455679999999998888766542 1234579999999999999999999987 4556777666
Q ss_pred CCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 303 DVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 303 ~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.+. .+.+.....+..++..+.... ++||||||++.+.+........ ....+.+...+ ...++.+|++||.+
T Consensus 252 ~l~~~~~~~g~~e~~l~~~~~~~~~~~-~~iL~IDEi~~l~~~~~~~~~~---~~~~~~L~~~l--~~~~~~~I~at~~~ 325 (758)
T 1r6b_X 252 SLLAGTKYRGDFEKRFKALLKQLEQDT-NSILFIDEIHTIIGAGAASGGQ---VDAANLIKPLL--SSGKIRVIGSTTYQ 325 (758)
T ss_dssp ---CCCCCSSCHHHHHHHHHHHHSSSS-CEEEEETTTTTTTTSCCSSSCH---HHHHHHHSSCS--SSCCCEEEEEECHH
T ss_pred HHhccccccchHHHHHHHHHHHHHhcC-CeEEEEechHHHhhcCCCCcch---HHHHHHHHHHH--hCCCeEEEEEeCch
Confidence 553 244566778888888887543 7999999999997765432211 22333333223 34567888888864
Q ss_pred -----CCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH
Q 010366 380 -----GDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 454 (512)
Q Consensus 380 -----~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 454 (512)
..+++++.+||. .+.|+.|+.+++..|++..+..+..... ..++++.+..++..
T Consensus 326 ~~~~~~~~d~aL~~Rf~-~i~v~~p~~~e~~~il~~l~~~~~~~~~--------------------v~~~~~al~~~~~~ 384 (758)
T 1r6b_X 326 EFSNIFEKDRALARRFQ-KIDITEPSIEETVQIINGLKPKYEAHHD--------------------VRYTAKAVRAAVEL 384 (758)
T ss_dssp HHHCCCCCTTSSGGGEE-EEECCCCCHHHHHHHHHHHHHHHHHHHT--------------------CCCCHHHHHHHHHH
T ss_pred HHhhhhhcCHHHHhCce-EEEcCCCCHHHHHHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHH
Confidence 357899999995 7999999999999999988876543211 12778888888777
Q ss_pred cCC-----CcHHHHHHHHHHHHHHHhC----CCCCccCHHHHHHHHHHH
Q 010366 455 TEG-----FSGREIAKLMASVQAAVYG----SENCVLDPSLFREVVDYK 494 (512)
Q Consensus 455 t~g-----~s~~dI~~lv~~~~aa~~~----~~~~~it~e~~~~al~~~ 494 (512)
+.| +.+..+..++..+.+.... .....++.+++..++...
T Consensus 385 s~~~i~~~~lp~~~i~lld~a~~~~~~~~~~~~~~~v~~~di~~~~~~~ 433 (758)
T 1r6b_X 385 AVKYINDRHLPDKAIDVIDEAGARARLMPVSKRKKTVNVADIESVVARI 433 (758)
T ss_dssp HHHHCTTSCTTHHHHHHHHHHHHHHHHSSSCCCCCSCCHHHHHHHHHHH
T ss_pred hhhhcccccCchHHHHHHHHHHHHHhcccccccCCccCHHHHHHHHHHh
Confidence 544 5566677777544333221 234678999999988653
No 67
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=99.73 E-value=1.2e-16 Score=156.42 Aligned_cols=210 Identities=14% Similarity=0.106 Sum_probs=132.2
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC---CCeEEEeCCCCCCCchhHHH
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVAPLGPQAVT 313 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~~~~~~~~~~~~~~ 313 (512)
+|++++|++.....+...+..... ...++||+||||||||++|++++..+. .+++.++|+.+.... ...
T Consensus 4 ~f~~~ig~~~~~~~~~~~~~~~~~------~~~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~~~~~~~~--~~~ 75 (265)
T 2bjv_A 4 YKDNLLGEANSFLEVLEQVSHLAP------LDKPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNCAALNENL--LDS 75 (265)
T ss_dssp ------CCCHHHHHHHHHHHHHTT------SCSCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEGGGSCHHH--HHH
T ss_pred ccccceeCCHHHHHHHHHHHHHhC------CCCCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEecCCCChhH--HHH
Confidence 589999999988888665544322 124699999999999999999999875 689999998764210 000
Q ss_pred HH---------------HHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCE
Q 010366 314 KI---------------HQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDI 370 (512)
Q Consensus 314 ~l---------------~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~v 370 (512)
.+ ...+.. ..+++|||||++.+ +...+..|..+++.-. ....++
T Consensus 76 ~l~g~~~~~~~g~~~~~~~~l~~----a~~~~l~lDEi~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~ 142 (265)
T 2bjv_A 76 ELFGHEAGAFTGAQKRHPGRFER----ADGGTLFLDELATA---------PMMVQEKLLRVIEYGELERVGGSQPLQVNV 142 (265)
T ss_dssp HHHCCC---------CCCCHHHH----TTTSEEEEESGGGS---------CHHHHHHHHHHHHHCEECCCCC--CEECCC
T ss_pred HhcCCcccccccccccccchhhh----cCCcEEEEechHhc---------CHHHHHHHHHHHHhCCeecCCCcccccCCe
Confidence 00 011111 23689999999997 3445555666665421 123468
Q ss_pred EEEEeeCCC-------CCCCHHHHcccc-ceeecCCCCH--HHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhh
Q 010366 371 VLALATNRP-------GDLDSAVADRID-EVLEFPLPGQ--EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEI 440 (512)
Q Consensus 371 iiI~ttN~~-------~~l~~al~~R~~-~~i~~~~p~~--~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 440 (512)
.||+|||.+ ..+.+.+.+||. ..+.+|++.. ++...++..++........ ...
T Consensus 143 ~iI~atn~~~~~~~~~~~~~~~L~~Rl~~~~i~lp~L~~R~~di~~l~~~~l~~~~~~~~-----------------~~~ 205 (265)
T 2bjv_A 143 RLVCATNADLPAMVNEGTFRADLLDALAFDVVQLPPLRERESDIMLMAEYFAIQMCREIK-----------------LPL 205 (265)
T ss_dssp EEEEEESSCHHHHHHHTSSCHHHHHHHCSEEEECCCGGGCHHHHHHHHHHHHHHHHHHTT-----------------CSS
T ss_pred EEEEecCcCHHHHHHcCCccHHHHHhhcCcEEeCCChhhhhHHHHHHHHHHHHHHHHHhC-----------------CCc
Confidence 899999984 358899999995 3456666544 4566666666655432211 111
Q ss_pred -cCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHH
Q 010366 441 -KGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLF 487 (512)
Q Consensus 441 -~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~ 487 (512)
..++++++..|.......+.+++.+++..+...+. ...|+.+++
T Consensus 206 ~~~~~~~a~~~L~~~~~~gn~reL~~~l~~~~~~~~---~~~i~~~~l 250 (265)
T 2bjv_A 206 FPGFTERARETLLNYRWPGNIRELKNVVERSVYRHG---TSDYPLDDI 250 (265)
T ss_dssp CCCBCHHHHHHHHHSCCTTHHHHHHHHHHHHHHHHC---CSSSCBCCC
T ss_pred ccCcCHHHHHHHHhCCCCCCHHHHHHHHHHHHHhCC---CCcCcHHHc
Confidence 24889999999888766678888888866544432 235555544
No 68
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=99.72 E-value=4.4e-17 Score=172.73 Aligned_cols=186 Identities=21% Similarity=0.284 Sum_probs=127.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTG 301 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~ 301 (512)
...+..|++|||++..+..+..++.. ....++||+||||||||++|+++|..+ +.+++.+++
T Consensus 173 ~~r~~~ld~iiGr~~~i~~l~~~l~r--------~~~~~~LL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 244 (468)
T 3pxg_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (468)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHhcCCCCCccCcHHHHHHHHHHHhc--------cCCCCeEEECCCCCCHHHHHHHHHHHHHhCCCChhhcCCeEEEeeC
Confidence 45567799999999999888765521 223579999999999999999999997 677888887
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC-
Q 010366 302 GDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG- 380 (512)
Q Consensus 302 ~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~- 380 (512)
+ ..+.+.....+..+|..+.... ++||||| .. ....+.|+..+ ..+.+.+|++||.+.
T Consensus 245 ~--~~~~g~~e~~~~~~~~~~~~~~-~~iLfiD--~~--------------~~a~~~L~~~L--~~g~v~vI~at~~~e~ 303 (468)
T 3pxg_A 245 G--TKYRGEFEDRLKKVMDEIRQAG-NIILFID--AA--------------IDASNILKPSL--ARGELQCIGATTLDEY 303 (468)
T ss_dssp ----------CTTHHHHHHHHHTCC-CCEEEEC--C----------------------CCCT--TSSSCEEEEECCTTTT
T ss_pred C--ccccchHHHHHHHHHHHHHhcC-CeEEEEe--Cc--------------hhHHHHHHHhh--cCCCEEEEecCCHHHH
Confidence 7 3333444456777888887654 7899999 10 11233344333 345789999999987
Q ss_pred ----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcC
Q 010366 381 ----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTE 456 (512)
Q Consensus 381 ----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~ 456 (512)
.+++++.+||. .|.|++|+.+++..|++.++..+..... ..++++.+..++..+.
T Consensus 304 ~~~~~~~~al~~Rf~-~i~v~~p~~e~~~~iL~~~~~~~~~~~~--------------------~~i~~~al~~l~~~s~ 362 (468)
T 3pxg_A 304 RKYIEKDAALERRFQ-PIQVDQPSVDESIQILQGLRDRYEAHHR--------------------VSITDDAIEAAVKLSD 362 (468)
T ss_dssp HHHHTTCSHHHHSEE-EEECCCCCHHHHHHHHHHTTTTSGGGSS--------------------CSCCHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHhCc-cceeCCCCHHHHHHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHHH
Confidence 68999999995 6999999999999999987765432211 1278888888887754
Q ss_pred CC-----cHHHHHHHH
Q 010366 457 GF-----SGREIAKLM 467 (512)
Q Consensus 457 g~-----s~~dI~~lv 467 (512)
+| .++....++
T Consensus 363 ~~~~~~~lp~~ai~ll 378 (468)
T 3pxg_A 363 RYISDRFLPDKAIDLI 378 (468)
T ss_dssp HSSCCSCTTHHHHHHH
T ss_pred HHhccCcCCcHHHHHH
Confidence 43 344555555
No 69
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=99.72 E-value=5.6e-17 Score=162.35 Aligned_cols=160 Identities=10% Similarity=0.091 Sum_probs=113.5
Q ss_pred cccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCCCCCCC---
Q 010366 241 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGGDVAPL--- 307 (512)
Q Consensus 241 vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~~~~~~--- 307 (512)
+.+.++....+..++... .. +.++.+++|+||||||||++++++++.+ ...++++||..+...
T Consensus 22 L~~Re~E~~~i~~~L~~~---i~-~~~~~~lli~GpPGTGKT~~v~~v~~~L~~~~~~~~~~~~~~v~INc~~~~t~~~~ 97 (318)
T 3te6_A 22 LKSQVEDFTRIFLPIYDS---LM-SSQNKLFYITNADDSTKFQLVNDVMDELITSSARKELPIFDYIHIDALELAGMDAL 97 (318)
T ss_dssp HHHHHHHHHHHHHHHHHH---HH-TTCCCEEEEECCCSHHHHHHHHHHHHHHHHTTTTTSSCCEEEEEEETTCCC--HHH
T ss_pred cCCHHHHHHHHHHHHHHH---hc-CCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhhhccCCceEEEEEeccccCCHHHH
Confidence 445555555554433322 22 2344689999999999999999999998 346889998775431
Q ss_pred --------------chhHHHHHHHHHHHH-HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEE
Q 010366 308 --------------GPQAVTKIHQLFDWA-KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVL 372 (512)
Q Consensus 308 --------------~~~~~~~l~~lf~~a-~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~vii 372 (512)
.+.....+...|... .....+.||||||+|.|. .+.+|..++........+++|
T Consensus 98 ~~~I~~~L~g~~~~~~~~~~~L~~~f~~~~~~~~~~~ii~lDE~d~l~-----------~q~~L~~l~~~~~~~~s~~~v 166 (318)
T 3te6_A 98 YEKIWFAISKENLCGDISLEALNFYITNVPKAKKRKTLILIQNPENLL-----------SEKILQYFEKWISSKNSKLSI 166 (318)
T ss_dssp HHHHHHHHSCCC--CCCCHHHHHHHHHHSCGGGSCEEEEEEECCSSSC-----------CTHHHHHHHHHHHCSSCCEEE
T ss_pred HHHHHHHhcCCCCCchHHHHHHHHHHHHhhhccCCceEEEEecHHHhh-----------cchHHHHHHhcccccCCcEEE
Confidence 122344566667654 223457899999999985 235666676654445678999
Q ss_pred EEeeCCCCCC----CHHHHcccc-ceeecCCCCHHHHHHHHHHHHHHH
Q 010366 373 ALATNRPGDL----DSAVADRID-EVLEFPLPGQEERFKLLKLYLDKY 415 (512)
Q Consensus 373 I~ttN~~~~l----~~al~~R~~-~~i~~~~p~~~er~~Il~~~l~~~ 415 (512)
|+++|..+.. ++++.+||. ..|.|++|+.++...|++..+...
T Consensus 167 I~i~n~~d~~~~~L~~~v~SR~~~~~i~F~pYt~~el~~Il~~Rl~~~ 214 (318)
T 3te6_A 167 ICVGGHNVTIREQINIMPSLKAHFTEIKLNKVDKNELQQMIITRLKSL 214 (318)
T ss_dssp EEECCSSCCCHHHHHTCHHHHTTEEEEECCCCCHHHHHHHHHHHHHHH
T ss_pred EEEecCcccchhhcchhhhccCCceEEEeCCCCHHHHHHHHHHHHHhh
Confidence 9999987654 445677986 689999999999999999999875
No 70
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.72 E-value=1.6e-16 Score=161.45 Aligned_cols=207 Identities=20% Similarity=0.211 Sum_probs=141.2
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-----CeEEEeCCCCCC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL-----DYALMTGGDVAP 306 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~-----~~~~v~~~~~~~ 306 (512)
++.+..|++++|++.+...+...+. .+..+ +++|+||||||||++|+++|..+.. .+..++.++..
T Consensus 18 k~rp~~~~~~~g~~~~~~~L~~~i~-------~g~~~-~~ll~Gp~G~GKTtla~~la~~l~~~~~~~~~~~~~~~~~~- 88 (340)
T 1sxj_C 18 KYRPETLDEVYGQNEVITTVRKFVD-------EGKLP-HLLFYGPPGTGKTSTIVALAREIYGKNYSNMVLELNASDDR- 88 (340)
T ss_dssp HTCCSSGGGCCSCHHHHHHHHHHHH-------TTCCC-CEEEECSSSSSHHHHHHHHHHHHHTTSHHHHEEEECTTSCC-
T ss_pred HhCCCcHHHhcCcHHHHHHHHHHHh-------cCCCc-eEEEECCCCCCHHHHHHHHHHHHcCCCccceEEEEcCcccc-
Confidence 5778889999999998888865542 22222 5999999999999999999998743 35667665532
Q ss_pred CchhHHHHHHHHHHHHHh-c----CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC
Q 010366 307 LGPQAVTKIHQLFDWAKK-S----KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 381 (512)
Q Consensus 307 ~~~~~~~~l~~lf~~a~~-~----~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~ 381 (512)
+ ...++..+..... . ..+.|++|||+|.+. .... +.|+..++..+.++.+|++||.+..
T Consensus 89 -~---~~~ir~~i~~~~~~~~~~~~~~~viiiDe~~~l~---------~~~~---~~L~~~le~~~~~~~~il~~n~~~~ 152 (340)
T 1sxj_C 89 -G---IDVVRNQIKDFASTRQIFSKGFKLIILDEADAMT---------NAAQ---NALRRVIERYTKNTRFCVLANYAHK 152 (340)
T ss_dssp -S---HHHHHTHHHHHHHBCCSSSCSCEEEEETTGGGSC---------HHHH---HHHHHHHHHTTTTEEEEEEESCGGG
T ss_pred -c---HHHHHHHHHHHHhhcccCCCCceEEEEeCCCCCC---------HHHH---HHHHHHHhcCCCCeEEEEEecCccc
Confidence 2 2233333332221 1 236799999999872 2333 3444444446678889999999999
Q ss_pred CCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHH
Q 010366 382 LDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGR 461 (512)
Q Consensus 382 l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~ 461 (512)
+.+++.+|+ ..+.|++++.++...++...+..... .++++.+..++..+.| +.+
T Consensus 153 i~~~i~sR~-~~~~~~~l~~~~~~~~l~~~~~~~~~------------------------~i~~~~~~~i~~~s~G-~~r 206 (340)
T 1sxj_C 153 LTPALLSQC-TRFRFQPLPQEAIERRIANVLVHEKL------------------------KLSPNAEKALIELSNG-DMR 206 (340)
T ss_dssp SCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHTTTC------------------------CBCHHHHHHHHHHHTT-CHH
T ss_pred cchhHHhhc-eeEeccCCCHHHHHHHHHHHHHHcCC------------------------CCCHHHHHHHHHHcCC-CHH
Confidence 999999999 58999999999999988877743211 2788889999988755 344
Q ss_pred HHHHHHHHHHHHHhCCC---CCccCHHHHHHHHH
Q 010366 462 EIAKLMASVQAAVYGSE---NCVLDPSLFREVVD 492 (512)
Q Consensus 462 dI~~lv~~~~aa~~~~~---~~~it~e~~~~al~ 492 (512)
.+..++ +.+..... ...||.+++..++.
T Consensus 207 ~~~~~l---~~~~~~~~~~~~~~it~~~v~~~~~ 237 (340)
T 1sxj_C 207 RVLNVL---QSCKATLDNPDEDEISDDVIYECCG 237 (340)
T ss_dssp HHHHHT---TTTTTTTCSSSCCCBCHHHHHHHTT
T ss_pred HHHHHH---HHHHHhcCCcccccccHHHHHHHhC
Confidence 433333 33322211 23688888766554
No 71
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=99.71 E-value=1.4e-16 Score=159.41 Aligned_cols=210 Identities=19% Similarity=0.170 Sum_probs=136.8
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhH----
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQA---- 311 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~---- 311 (512)
++++|.+..+..+...+..... ...++||+||||||||++|++++... +.||+.++|+.+......+
T Consensus 2 ~~iig~s~~~~~~~~~~~~~a~------~~~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~~~~~~~~l~~~~lfg 75 (304)
T 1ojl_A 2 SHMIGSSPAMQHLLNEIAMVAP------SDATVLIHGDSGTGKELVARALHACSARSDRPLVTLNCAALNESLLESELFG 75 (304)
T ss_dssp -CCCCCSHHHHHHHHHHHHHCS------TTSCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEECSSCCHHHHHHHHTC
T ss_pred CCcEECCHHHHHHHHHHHHHhC------CCCcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEeCCCCChHHHHHHhcC
Confidence 4689999888888776655432 22469999999999999999999975 5789999998864310000
Q ss_pred ---------HHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEE
Q 010366 312 ---------VTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLAL 374 (512)
Q Consensus 312 ---------~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ 374 (512)
.......|..+. +++||||||+.+ +...+..|..+++... ....++.||+
T Consensus 76 ~~~g~~tg~~~~~~g~~~~a~----~g~L~LDEi~~l---------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~riI~ 142 (304)
T 1ojl_A 76 HEKGAFTGADKRREGRFVEAD----GGTLFLDEIGDI---------SPLMQVRLLRAIQEREVQRVGSNQTISVDVRLIA 142 (304)
T ss_dssp CCSSCCC---CCCCCHHHHHT----TSEEEEESCTTC---------CHHHHHHHHHHHHSSBCCBTTBCCCCBCCCEEEE
T ss_pred ccccccCchhhhhcCHHHhcC----CCEEEEeccccC---------CHHHHHHHHHHHhcCEeeecCCcccccCCeEEEE
Confidence 000112333332 579999999997 3345555555555421 1234689999
Q ss_pred eeCCC-------CCCCHHHHcccc-ceeecCCCC--HHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCC
Q 010366 375 ATNRP-------GDLDSAVADRID-EVLEFPLPG--QEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLT 444 (512)
Q Consensus 375 ttN~~-------~~l~~al~~R~~-~~i~~~~p~--~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 444 (512)
|||.+ ..+++.+.+||. ..+.+|++. .++...++..++..+...... ....++
T Consensus 143 atn~~l~~~v~~g~fr~~L~~Rl~~~~i~lPpL~eR~edi~~l~~~~l~~~~~~~~~-----------------~~~~~s 205 (304)
T 1ojl_A 143 ATHRDLAEEVSAGRFRQDLYYRLNVVAIEMPSLRQRREDIPLLADHFLRRFAERNRK-----------------VVKGFT 205 (304)
T ss_dssp EESSCHHHHHHHTSSCHHHHHHHSSEEEECCCSGGGGGGHHHHHHHHHHHHHHHTTC-----------------CCCCBC
T ss_pred ecCccHHHHHHhCCcHHHHHhhcCeeEEeccCHHHhHhhHHHHHHHHHHHHHHHhcc-----------------CccCCC
Confidence 99985 367889999994 234555554 355666777776654322110 112488
Q ss_pred HHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHH
Q 010366 445 DDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLF 487 (512)
Q Consensus 445 ~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~ 487 (512)
++++..|..+.+..+.+++.+++..+...+. ...|+.+++
T Consensus 206 ~~a~~~L~~~~wpGnvReL~~~l~~~~~~~~---~~~i~~~~l 245 (304)
T 1ojl_A 206 PQAMDLLIHYDWPGNIRELENAIERAVVLLT---GEYISEREL 245 (304)
T ss_dssp HHHHHHHHHCCCSSHHHHHHHHHHHHHHHCC---SSSBCGGGS
T ss_pred HHHHHHHHcCCCCCCHHHHHHHHHHHHHhCC---CCcccHHhh
Confidence 9999999998866688888888865544332 245555554
No 72
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=99.70 E-value=3.3e-16 Score=177.85 Aligned_cols=205 Identities=20% Similarity=0.239 Sum_probs=135.7
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTG 301 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~ 301 (512)
...+..|+++||.++....+..++. . ...++++|+||||||||++|+++|..+ +.+++.+++
T Consensus 163 ~~r~~~ld~viGr~~~i~~l~~~l~------~--~~~~~vlL~G~pG~GKT~la~~la~~l~~~~~p~~l~~~~~~~l~~ 234 (854)
T 1qvr_A 163 LAAEGKLDPVIGRDEEIRRVIQILL------R--RTKNNPVLIGEPGVGKTAIVEGLAQRIVKGDVPEGLKGKRIVSLQM 234 (854)
T ss_dssp HHHTTCSCCCCSCHHHHHHHHHHHH------C--SSCCCCEEEECTTSCHHHHHHHHHHHHHHTCSCTTSTTCEEEEECC
T ss_pred HHhcCCCcccCCcHHHHHHHHHHHh------c--CCCCceEEEcCCCCCHHHHHHHHHHHHhcCCCchhhcCCeEEEeeh
Confidence 3456789999999988888766542 1 223479999999999999999999987 788999998
Q ss_pred CCCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 302 GDVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 302 ~~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
+.+. .+.++....+..++..+.....++||||||++.+.+.....+ .......+..++ ....+.+|++||.
T Consensus 235 ~~l~~g~~~~g~~~~~l~~~~~~~~~~~~~~iL~IDEi~~l~~~~~~~g-~~~~~~~L~~~l-----~~~~i~~I~at~~ 308 (854)
T 1qvr_A 235 GSLLAGAKYRGEFEERLKAVIQEVVQSQGEVILFIDELHTVVGAGKAEG-AVDAGNMLKPAL-----ARGELRLIGATTL 308 (854)
T ss_dssp -----------CHHHHHHHHHHHHHTTCSSEEEEECCC--------------------HHHH-----HTTCCCEEEEECH
T ss_pred HHhhccCccchHHHHHHHHHHHHHHhcCCCeEEEEecHHHHhccCCccc-hHHHHHHHHHHH-----hCCCeEEEEecCc
Confidence 8774 244566778888998888765678999999999876543321 122233444444 2356778898887
Q ss_pred CC----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHH
Q 010366 379 PG----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAK 454 (512)
Q Consensus 379 ~~----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~ 454 (512)
+. .+++++.+||+ .+.|++|+.+++..|++.++..+..... ..++++.+..++..
T Consensus 309 ~~~~~~~~d~aL~rRf~-~i~l~~p~~~e~~~iL~~~~~~~~~~~~--------------------~~i~~~al~~~~~l 367 (854)
T 1qvr_A 309 DEYREIEKDPALERRFQ-PVYVDEPTVEETISILRGLKEKYEVHHG--------------------VRISDSAIIAAATL 367 (854)
T ss_dssp HHHHHHTTCTTTCSCCC-CEEECCCCHHHHHHHHHHHHHHHHHHTT--------------------CEECHHHHHHHHHH
T ss_pred hHHhhhccCHHHHhCCc-eEEeCCCCHHHHHHHHHhhhhhhhhhcC--------------------CCCCHHHHHHHHHH
Confidence 64 47999999996 5999999999999999988876543211 12677777777776
Q ss_pred c-----CCCcHHHHHHHHHHHH
Q 010366 455 T-----EGFSGREIAKLMASVQ 471 (512)
Q Consensus 455 t-----~g~s~~dI~~lv~~~~ 471 (512)
+ .+|.+.....++..+.
T Consensus 368 s~r~i~~~~lp~kai~lldea~ 389 (854)
T 1qvr_A 368 SHRYITERRLPDKAIDLIDEAA 389 (854)
T ss_dssp HHHHCCSSCTHHHHHHHHHHHH
T ss_pred HhhhcccccChHHHHHHHHHHH
Confidence 4 3456666666664333
No 73
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=99.70 E-value=4.8e-16 Score=158.38 Aligned_cols=191 Identities=20% Similarity=0.251 Sum_probs=130.3
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCC-----------------
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGL----------------- 294 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~----------------- 294 (512)
++.|.+|++++|++.+...+...+. ..+..+ +++|+||||||||+++++++..+..
T Consensus 7 kyrP~~~~~~vg~~~~~~~l~~~~~------~~~~~~-~~ll~Gp~G~GKTtl~~~la~~l~~~~~g~i~~~~~~~~~~~ 79 (354)
T 1sxj_E 7 KYRPKSLNALSHNEELTNFLKSLSD------QPRDLP-HLLLYGPNGTGKKTRCMALLESIFGPGVYRLKIDVRQFVTAS 79 (354)
T ss_dssp TTCCCSGGGCCSCHHHHHHHHTTTT------CTTCCC-CEEEECSTTSSHHHHHHTHHHHHSCTTCCC------------
T ss_pred ccCCCCHHHhcCCHHHHHHHHHHHh------hCCCCC-eEEEECCCCCCHHHHHHHHHHHHcCCCCCeEEecceeecccc
Confidence 5778889999999998887754430 223332 4999999999999999999996421
Q ss_pred ------------CeEEEeCCCCCCCchhHHHHHHHHHHHHHh-------------cCCCcEEEEccchhhhhhcccCCCC
Q 010366 295 ------------DYALMTGGDVAPLGPQAVTKIHQLFDWAKK-------------SKRGLLLFIDEADAFLCERNKTYMS 349 (512)
Q Consensus 295 ------------~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~-------------~~~~~vl~lDEid~l~~~~~~~~~~ 349 (512)
+++.++.++...... ..+...+..+.. ..++.||+|||++.+ .
T Consensus 80 ~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~i~~~~~~~~~~~~~~ls~l~~~~~vlilDE~~~L---------~ 147 (354)
T 1sxj_E 80 NRKLELNVVSSPYHLEITPSDMGNNDR---IVIQELLKEVAQMEQVDFQDSKDGLAHRYKCVIINEANSL---------T 147 (354)
T ss_dssp ------CCEECSSEEEECCC----CCH---HHHHHHHHHHTTTTC------------CCEEEEEECTTSS---------C
T ss_pred cccceeeeecccceEEecHhhcCCcch---HHHHHHHHHHHHhccccccccccccCCCCeEEEEeCcccc---------C
Confidence 122333222111110 123333333321 124679999999986 3
Q ss_pred HHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhh
Q 010366 350 EAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHR 429 (512)
Q Consensus 350 ~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~ 429 (512)
......+..++.. ...++.||++||.+..+.+.+.+|+ ..+.|++|+.+++..++...+......
T Consensus 148 ~~~~~~L~~~le~---~~~~~~~Il~t~~~~~l~~~l~sR~-~~~~~~~~~~~~~~~~l~~~~~~~~~~----------- 212 (354)
T 1sxj_E 148 KDAQAALRRTMEK---YSKNIRLIMVCDSMSPIIAPIKSQC-LLIRCPAPSDSEISTILSDVVTNERIQ----------- 212 (354)
T ss_dssp HHHHHHHHHHHHH---STTTEEEEEEESCSCSSCHHHHTTS-EEEECCCCCHHHHHHHHHHHHHHHTCE-----------
T ss_pred HHHHHHHHHHHHh---hcCCCEEEEEeCCHHHHHHHHHhhc-eEEecCCcCHHHHHHHHHHHHHHcCCC-----------
Confidence 3334444444443 4567899999999999999999999 899999999999999999888654321
Q ss_pred hhhhhhhhhhhcCCC-HHHHHHHHHHcCCCcHHHHHHHHHHH
Q 010366 430 LFKSEQQKIEIKGLT-DDILMEAAAKTEGFSGREIAKLMASV 470 (512)
Q Consensus 430 ~~~~~~~~~~~~~~~-~~~l~~la~~t~g~s~~dI~~lv~~~ 470 (512)
++ ++.+..++..+.| +.|++..++..+
T Consensus 213 -------------~~~~~~l~~i~~~~~G-~~r~a~~~l~~~ 240 (354)
T 1sxj_E 213 -------------LETKDILKRIAQASNG-NLRVSLLMLESM 240 (354)
T ss_dssp -------------ECCSHHHHHHHHHHTT-CHHHHHHHHTHH
T ss_pred -------------CCcHHHHHHHHHHcCC-CHHHHHHHHHHH
Confidence 66 7889999988866 666666666433
No 74
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=99.67 E-value=7.4e-17 Score=148.01 Aligned_cols=154 Identities=18% Similarity=0.214 Sum_probs=107.7
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTGG 302 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~~ 302 (512)
..+..|++++|.+.....+...+.. ....+++|+||||||||++|++++..+ +.+++.+++.
T Consensus 16 ~~~~~~~~~~g~~~~~~~l~~~l~~--------~~~~~vll~G~~G~GKT~la~~~~~~~~~~~~~~~~~~~~~~~~~~~ 87 (187)
T 2p65_A 16 ARAGKLDPVIGRDTEIRRAIQILSR--------RTKNNPILLGDPGVGKTAIVEGLAIKIVQGDVPDSLKGRKLVSLDLS 87 (187)
T ss_dssp HHTTCSCCCCSCHHHHHHHHHHHTS--------SSSCEEEEESCGGGCHHHHHHHHHHHHHTTCSCTTTTTCEEEEECHH
T ss_pred HhccccchhhcchHHHHHHHHHHhC--------CCCCceEEECCCCCCHHHHHHHHHHHHHhcCCcchhcCCeEEEEeHH
Confidence 4456789999999887777554411 223579999999999999999999987 6677777765
Q ss_pred CCC---CCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 303 DVA---PLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 303 ~~~---~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
.+. ...+.....+..++..+.....+.+|||||++.+...+............+..++ ...++++|+++|.+
T Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vl~iDe~~~l~~~~~~~~~~~~~~~~l~~~~-----~~~~~~ii~~~~~~ 162 (187)
T 2p65_A 88 SLIAGAKYRGDFEERLKSILKEVQDAEGQVVMFIDEIHTVVGAGAVAEGALDAGNILKPML-----ARGELRCIGATTVS 162 (187)
T ss_dssp HHHHHCCSHHHHHHHHHHHHHHHHHTTTSEEEEETTGGGGSSSSSSCTTSCCTHHHHHHHH-----HTTCSCEEEEECHH
T ss_pred HhhcCCCchhHHHHHHHHHHHHHHhcCCceEEEEeCHHHhcccccccccchHHHHHHHHHH-----hcCCeeEEEecCHH
Confidence 432 1334445566777777776655789999999998654331111112233344443 23567899999876
Q ss_pred C-----CCCHHHHccccceeecCCCC
Q 010366 380 G-----DLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 380 ~-----~l~~al~~R~~~~i~~~~p~ 400 (512)
. .+++++.+||. .+.+++|+
T Consensus 163 ~~~~~~~~~~~l~~R~~-~i~i~~p~ 187 (187)
T 2p65_A 163 EYRQFIEKDKALERRFQ-QILVEQPS 187 (187)
T ss_dssp HHHHHTTTCHHHHHHEE-EEECCSCC
T ss_pred HHHHHHhccHHHHHhcC-cccCCCCC
Confidence 5 68999999996 59999886
No 75
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=99.66 E-value=1.5e-15 Score=170.39 Aligned_cols=189 Identities=21% Similarity=0.267 Sum_probs=131.1
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----------CCCeEEEeC
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----------GLDYALMTG 301 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----------~~~~~~v~~ 301 (512)
...+..|+.+||.+..+..+..++.. ....++||+||||||||++|+++|..+ +.+++.+++
T Consensus 173 ~~~~~~ld~iiG~~~~i~~l~~~l~~--------~~~~~vLL~G~pGtGKT~la~~la~~l~~~~~p~~l~~~~~~~~~~ 244 (758)
T 3pxi_A 173 IAKEDSLDPVIGRSKEIQRVIEVLSR--------RTKNNPVLIGEPGVGKTAIAEGLAQQIINNEVPEILRDKRVMTLDM 244 (758)
T ss_dssp HTTSSCSCCCCCCHHHHHHHHHHHHC--------SSSCEEEEESCTTTTTHHHHHHHHHHHHSSCSCTTTSSCCEECC--
T ss_pred HHhhCCCCCccCchHHHHHHHHHHhC--------CCCCCeEEECCCCCCHHHHHHHHHHHHhcCCCChhhcCCeEEEecc
Confidence 34567799999999999988765521 233579999999999999999999997 677887777
Q ss_pred CCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC-
Q 010366 302 GDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG- 380 (512)
Q Consensus 302 ~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~- 380 (512)
...+.++....+..+|..+... .++||||| .. ....+.++..+ ....+.+|++||...
T Consensus 245 --g~~~~G~~e~~l~~~~~~~~~~-~~~iLfiD--~~--------------~~~~~~L~~~l--~~~~v~~I~at~~~~~ 303 (758)
T 3pxi_A 245 --GTKYRGEFEDRLKKVMDEIRQA-GNIILFID--AA--------------IDASNILKPSL--ARGELQCIGATTLDEY 303 (758)
T ss_dssp ----------CTTHHHHHHHHHTC-CCCEEEEC--C----------------------CCCT--TSSSCEEEEECCTTTT
T ss_pred --cccccchHHHHHHHHHHHHHhc-CCEEEEEc--Cc--------------hhHHHHHHHHH--hcCCEEEEeCCChHHH
Confidence 2223445556778888888774 47899999 11 11223344334 355789999999988
Q ss_pred ----CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc-
Q 010366 381 ----DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT- 455 (512)
Q Consensus 381 ----~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t- 455 (512)
.+++++.+|| ..|.|++|+.+++..|++.+...+..... ..++++.+..++..+
T Consensus 304 ~~~~~~d~al~rRf-~~i~v~~p~~~~~~~il~~~~~~~~~~~~--------------------~~i~~~al~~~~~~s~ 362 (758)
T 3pxi_A 304 RKYIEKDAALERRF-QPIQVDQPSVDESIQILQGLRDRYEAHHR--------------------VSITDDAIEAAVKLSD 362 (758)
T ss_dssp HHHHTTCSHHHHSE-EEEECCCCCHHHHHHHHHHTTTTSGGGSS--------------------CSCCHHHHHHHHHHHH
T ss_pred HHHhhccHHHHhhC-cEEEeCCCCHHHHHHHHHHHHHHHHHhcC--------------------CCCCHHHHHHHHHHhh
Confidence 7999999999 67999999999999999977655432111 137888888887764
Q ss_pred ----CCCcHHHHHHHHHHH
Q 010366 456 ----EGFSGREIAKLMASV 470 (512)
Q Consensus 456 ----~g~s~~dI~~lv~~~ 470 (512)
.++.++....++..+
T Consensus 363 ~~i~~~~~p~~ai~ll~~a 381 (758)
T 3pxi_A 363 RYISDRFLPDKAIDLIDEA 381 (758)
T ss_dssp HSSCCSCTTHHHHHHHHHH
T ss_pred cccccCcCCcHHHHHHHHH
Confidence 355666666666433
No 76
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=99.65 E-value=2.3e-16 Score=167.54 Aligned_cols=229 Identities=16% Similarity=0.121 Sum_probs=137.4
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC--CCeEEEeCCCCCC---CchhHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAP---LGPQAVT 313 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~~~~~~~---~~~~~~~ 313 (512)
..++|+++++..+...+.. + .++||+||||||||++|+++|..++ .+|..+++....+ .+.....
T Consensus 22 ~~ivGq~~~i~~l~~al~~-------~---~~VLL~GpPGtGKT~LAraLa~~l~~~~~f~~~~~~~~t~~dL~G~~~~~ 91 (500)
T 3nbx_X 22 KGLYERSHAIRLCLLAALS-------G---ESVFLLGPPGIAKSLIARRLKFAFQNARAFEYLMTRFSTPEEVFGPLSIQ 91 (500)
T ss_dssp TTCSSCHHHHHHHHHHHHH-------T---CEEEEECCSSSSHHHHHHHGGGGBSSCCEEEEECCTTCCHHHHHCCBC--
T ss_pred hhhHHHHHHHHHHHHHHhc-------C---CeeEeecCchHHHHHHHHHHHHHHhhhhHHHHHHHhcCCHHHhcCcccHH
Confidence 6789999998877544321 1 3699999999999999999999885 3566665542111 0000000
Q ss_pred H--HHHHHHHHHhcC--CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC--------CCCCCEEEEEeeCCCC-
Q 010366 314 K--IHQLFDWAKKSK--RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG--------DQSKDIVLALATNRPG- 380 (512)
Q Consensus 314 ~--l~~lf~~a~~~~--~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--------~~~~~viiI~ttN~~~- 380 (512)
. -...|..+.... .++|||||||+.+ +...+..|..++..-. ..+.. ++|+|||.+.
T Consensus 92 ~~~~~g~~~~~~~g~l~~~~IL~IDEI~r~---------~~~~q~~LL~~lee~~v~i~G~~~~~~~~-~iI~ATN~lpe 161 (500)
T 3nbx_X 92 ALKDEGRYERLTSGYLPEAEIVFLDEIWKA---------GPAILNTLLTAINERQFRNGAHVEKIPMR-LLVAASNELPE 161 (500)
T ss_dssp --------CBCCTTSGGGCSEEEEESGGGC---------CHHHHHHHHHHHHSSEEECSSSEEECCCC-EEEEEESSCCC
T ss_pred HHhhchhHHhhhccCCCcceeeeHHhHhhh---------cHHHHHHHHHHHHHHhccCCCCcCCcchh-hhhhccccCCC
Confidence 0 011111111100 2568999999875 4455555555554210 11223 4577788633
Q ss_pred --CCCHHHHccccceeecCCCCH-HHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHc--
Q 010366 381 --DLDSAVADRIDEVLEFPLPGQ-EERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKT-- 455 (512)
Q Consensus 381 --~l~~al~~R~~~~i~~~~p~~-~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t-- 455 (512)
.+.+++++||...+.+++|+. +++..|+.......... ....+......+..-...+.--.++++.++.++...
T Consensus 162 ~~~~~~aLldRF~~~i~v~~p~~~ee~~~IL~~~~~~~~~~-~~~~~~~~~e~l~~~~~~~~~v~v~d~v~e~i~~l~~~ 240 (500)
T 3nbx_X 162 ADSSLEALYDRMLIRLWLDKVQDKANFRSMLTSQQDENDNP-VPDALQVTDEEYERWQKEIGEITLPDHVFELIFMLRQQ 240 (500)
T ss_dssp TTCTTHHHHTTCCEEEECCSCCCHHHHHHHHTCCCCTTSCC-SCTTTSBCHHHHHHHHHHHTTCBCCHHHHHHHHHHHHH
T ss_pred ccccHHHHHHHHHHHHHHHHhhhhhhHHHHHhcccccCCCC-CCccceecHHHHHHHHhcCCcccCchHHHHHHHHHHHH
Confidence 255799999988899999987 67888887654321100 000011111111111111112247888888887765
Q ss_pred -------CCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHH
Q 010366 456 -------EGFSGREIAKLMASVQAAVYGSENCVLDPSLFR 488 (512)
Q Consensus 456 -------~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~ 488 (512)
.|.|+|.+..++..+.+.+.-.+...++.+|+.
T Consensus 241 lr~~r~~~~iS~R~~~~llr~A~A~A~l~gr~~Vt~eDv~ 280 (500)
T 3nbx_X 241 LDKLPDAPYVSDRRWKKAIRLLQASAFFSGRSAVAPVDLI 280 (500)
T ss_dssp HHHCSSSCCCCHHHHHHHHHHHHHHHHHTTCSBCCGGGGG
T ss_pred hhcCCCCCccchhHHHHHHHHHHHHHhhcCCccccchHHH
Confidence 488999999999888888877777888998887
No 77
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=99.61 E-value=1e-14 Score=147.89 Aligned_cols=156 Identities=17% Similarity=0.211 Sum_probs=113.5
Q ss_pred CCCCcceEEecCCCCchHHHHHHHHHHhCCC------------------------eEEEeCCCCCCCchhHHHHHHHHHH
Q 010366 265 NAPFRNMLFYGPPGTGKTMAARELARKSGLD------------------------YALMTGGDVAPLGPQAVTKIHQLFD 320 (512)
Q Consensus 265 ~~p~~~vLL~GppGtGKT~lA~alA~~l~~~------------------------~~~v~~~~~~~~~~~~~~~l~~lf~ 320 (512)
+..+..+||+||||||||++|+++|+.+.+. +..+++..-. .......++.+++
T Consensus 21 ~~~~~a~L~~G~~G~GKt~~a~~la~~l~~~~~~~~~~c~~c~~c~~~~~~~~~d~~~~~~~~~~--~~~~i~~ir~l~~ 98 (334)
T 1a5t_A 21 GRGHHALLIQALPGMGDDALIYALSRYLLCQQPQGHKSCGHCRGCQLMQAGTHPDYYTLAPEKGK--NTLGVDAVREVTE 98 (334)
T ss_dssp TCCCSEEEEECCTTSCHHHHHHHHHHHHTCSSCBTTBCCSCSHHHHHHHHTCCTTEEEECCCTTC--SSBCHHHHHHHHH
T ss_pred CCcceeEEEECCCCchHHHHHHHHHHHHhCCCCCCCCCCCCCHHHHHHhcCCCCCEEEEeccccC--CCCCHHHHHHHHH
Confidence 4444579999999999999999999987542 3333332100 1123345666666
Q ss_pred HHHhc---CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceeecC
Q 010366 321 WAKKS---KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 321 ~a~~~---~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~ 397 (512)
.+... .++.|++|||+|.+. ....+.|+..+++++.++++|++||.++.+.|.+.||+ ..+.|+
T Consensus 99 ~~~~~~~~~~~kvviIdead~l~------------~~a~naLLk~lEep~~~~~~Il~t~~~~~l~~ti~SRc-~~~~~~ 165 (334)
T 1a5t_A 99 KLNEHARLGGAKVVWVTDAALLT------------DAAANALLKTLEEPPAETWFFLATREPERLLATLRSRC-RLHYLA 165 (334)
T ss_dssp HTTSCCTTSSCEEEEESCGGGBC------------HHHHHHHHHHHTSCCTTEEEEEEESCGGGSCHHHHTTS-EEEECC
T ss_pred HHhhccccCCcEEEEECchhhcC------------HHHHHHHHHHhcCCCCCeEEEEEeCChHhCcHHHhhcc-eeeeCC
Confidence 65432 246799999999972 23467788888888889999999999999999999999 789999
Q ss_pred CCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHH
Q 010366 398 LPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAK 465 (512)
Q Consensus 398 ~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~ 465 (512)
+|+.++...++.... .++++.+..++..+.| +++.+..
T Consensus 166 ~~~~~~~~~~L~~~~-----------------------------~~~~~~~~~l~~~s~G-~~r~a~~ 203 (334)
T 1a5t_A 166 PPPEQYAVTWLSREV-----------------------------TMSQDALLAALRLSAG-SPGAALA 203 (334)
T ss_dssp CCCHHHHHHHHHHHC-----------------------------CCCHHHHHHHHHHTTT-CHHHHHH
T ss_pred CCCHHHHHHHHHHhc-----------------------------CCCHHHHHHHHHHcCC-CHHHHHH
Confidence 999999998887654 0566677777777655 4444433
No 78
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=99.61 E-value=3e-16 Score=170.69 Aligned_cols=241 Identities=13% Similarity=0.086 Sum_probs=146.6
Q ss_pred CccccChHHHHHHHHHHHHhhchh------hcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEe----CCCCCC-C
Q 010366 239 GDVILHPSLQKRIRQLSGATANTK------AHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMT----GGDVAP-L 307 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~------~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~----~~~~~~-~ 307 (512)
..++|++.++..+...+ .... .......++||+||||||||++|+++|..++..++... +..+.. .
T Consensus 295 ~~I~G~e~vk~al~~~l---~~g~~~~~~~~~~r~~~~vLL~GppGtGKT~LAr~la~~~~r~~~~~~~~~~~~~l~~~~ 371 (595)
T 3f9v_A 295 PSIYGHWELKEALALAL---FGGVPKVLEDTRIRGDIHILIIGDPGTAKSQMLQFISRVAPRAVYTTGKGSTAAGLTAAV 371 (595)
T ss_dssp STTSCCHHHHHHHTTTT---TCCCCEETTTTEECCSCCEEEEESSCCTHHHHHHSSSTTCSCEECCCTTCSTTTTSEEEC
T ss_pred chhcChHHHHHHHHHHH---hCCCcccccCCCcCCCcceEEECCCchHHHHHHHHHHHhCCCceecCCCcccccccccee
Confidence 56788888777663211 1100 00011227999999999999999999998876544321 122111 0
Q ss_pred chhH-HH---HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC----------CCCCCEEEE
Q 010366 308 GPQA-VT---KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG----------DQSKDIVLA 373 (512)
Q Consensus 308 ~~~~-~~---~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~----------~~~~~viiI 373 (512)
.... .. .-...+..+ .++|+||||||.+ +...+..|..++..-. ..+.++.||
T Consensus 372 ~~~~~~g~~~~~~G~l~~A----~~gil~IDEid~l---------~~~~q~~Ll~~le~~~i~i~~~g~~~~~~~~~~vI 438 (595)
T 3f9v_A 372 VREKGTGEYYLEAGALVLA----DGGIAVIDEIDKM---------RDEDRVAIHEAMEQQTVSIAKAGIVAKLNARAAVI 438 (595)
T ss_dssp SSGGGTSSCSEEECHHHHH----SSSEECCTTTTCC---------CSHHHHHHHHHHHSSSEEEESSSSEEEECCCCEEE
T ss_pred eeccccccccccCCeeEec----CCCcEEeehhhhC---------CHhHhhhhHHHHhCCEEEEecCCcEEEecCceEEE
Confidence 0000 00 000112222 2689999999996 3344555555554311 123568899
Q ss_pred EeeCCCC-------------CCCHHHHcccccee-ecCCCCHHHHHHHHHHHHHHHhhh--hCCCCCcchhhhhhhhhhh
Q 010366 374 LATNRPG-------------DLDSAVADRIDEVL-EFPLPGQEERFKLLKLYLDKYIAQ--AGSRKPGLVHRLFKSEQQK 437 (512)
Q Consensus 374 ~ttN~~~-------------~l~~al~~R~~~~i-~~~~p~~~er~~Il~~~l~~~~~~--~~~~~~~~~~~~~~~~~~~ 437 (512)
+|||.+. .+++++++|||..+ ..+.|+.+ ...|.+..+...... ......+.+.++.......
T Consensus 439 aatNp~~G~~~~~~~~~~ni~l~~aLl~RFDl~~~~~~~~~~e-~~~i~~~il~~~~~~~~~~~l~~~~l~~~i~~ar~~ 517 (595)
T 3f9v_A 439 AAGNPKFGRYISERPVSDNINLPPTILSRFDLIFILKDQPGEQ-DRELANYILDVHSGKSTKNIIDIDTLRKYIAYARKY 517 (595)
T ss_dssp EEECCTTCCSCTTSCSCTTTCSCSSSGGGCSCCEEECCTTHHH-HHHHHHHHHTTTCCCSSSSTTCCTTTHHHHHHHHHH
T ss_pred EEcCCcCCccCcccCchhccCCCHHHHhhCeEEEEeCCCCCHH-HHHHHHHHHHHhhccccccCCCHHHHHHHHHHHHHh
Confidence 9999876 89999999998655 55666666 777777666542210 0011112222222211111
Q ss_pred hhhcCCCHHHHHHHHHH--------------cCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHH
Q 010366 438 IEIKGLTDDILMEAAAK--------------TEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAE 497 (512)
Q Consensus 438 ~~~~~~~~~~l~~la~~--------------t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~ 497 (512)
+ .+.+++++.+.|... ..+.|+|.+..++..+.+.+.......++.+|+.+|+......
T Consensus 518 ~-~p~ls~ea~~~l~~~y~~lR~~~~~~~~~~~~~s~R~l~~lirla~a~A~l~~~~~V~~~dv~~Ai~l~~~s 590 (595)
T 3f9v_A 518 V-TPKITSEAKNLITDFFVEMRKKSSETPDSPILITPRQLEALIRISEAYAKMALKAEVTREDAERAINIMRLF 590 (595)
T ss_dssp H-CCCCCCCTHHHHHHHHTTSSCSCCBCSSSCBCSSTTTTTHHHHHHHHHHHTTSSCCSSHHHHHHHHHHHHHH
T ss_pred C-CCCCCHHHHHHHHHHHHHHHHhhccCCCccccccHHHHHHHHHHHHHHHHHhCcCCCCHHHHHHHHHHHHHH
Confidence 1 134677677777766 4578999999999999998888888999999999999876544
No 79
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=99.58 E-value=1.1e-13 Score=143.34 Aligned_cols=231 Identities=16% Similarity=0.133 Sum_probs=146.8
Q ss_pred CCCCccccChHHHHHHHHHH-HHhhchhhcCCCCcceEE--ecCCCCchHHHHHHHHHHh---------CCCeEEEeCCC
Q 010366 236 NGFGDVILHPSLQKRIRQLS-GATANTKAHNAPFRNMLF--YGPPGTGKTMAARELARKS---------GLDYALMTGGD 303 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~-~~~~~~~~~~~p~~~vLL--~GppGtGKT~lA~alA~~l---------~~~~~~v~~~~ 303 (512)
...+.++|.+...+.+...+ ...... ....+.+++| +||||||||++++.+++.+ +.++++++|..
T Consensus 19 ~~p~~l~gR~~el~~l~~~l~~~~~~~--~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 96 (412)
T 1w5s_A 19 YIPPELRVRRGEAEALARIYLNRLLSG--AGLSDVNMIYGSIGRVGIGKTTLAKFTVKRVSEAAAKEGLTVKQAYVNAFN 96 (412)
T ss_dssp CCCSSCSSSCHHHHHHHHHHHHHHHTS--SCBCCEEEEEECTTCCSSSHHHHHHHHHHHHHHHHHHTTCCEEEEEEEGGG
T ss_pred cCCCCCCChHHHHHHHHHHHhHHHhcC--CCCCCCEEEEeCcCcCCCCHHHHHHHHHHHHHHHHhccCCceeEEEEECCC
Confidence 34588999999888887665 433211 0022357999 9999999999999998876 45677888643
Q ss_pred CCCC------------------chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC
Q 010366 304 VAPL------------------GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 365 (512)
Q Consensus 304 ~~~~------------------~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 365 (512)
.... +......+..+.........+.+|+|||++.+...... +......+..++.....
T Consensus 97 ~~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~l~~~l~~~~~~~llvlDe~~~l~~~~~~---~~~~l~~l~~~~~~~~~ 173 (412)
T 1w5s_A 97 APNLYTILSLIVRQTGYPIQVRGAPALDILKALVDNLYVENHYLLVILDEFQSMLSSPRI---AAEDLYTLLRVHEEIPS 173 (412)
T ss_dssp CCSHHHHHHHHHHHHTCCCCCTTCCHHHHHHHHHHHHHHHTCEEEEEEESTHHHHSCTTS---CHHHHHHHHTHHHHSCC
T ss_pred CCCHHHHHHHHHHHhCCCCCCCCCCHHHHHHHHHHHHHhcCCeEEEEEeCHHHHhhccCc---chHHHHHHHHHHHhccc
Confidence 2110 11111122223333333344789999999998432110 11222222223333221
Q ss_pred CC--CCEEEEEeeCCCC---CCC---HHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhh
Q 010366 366 QS--KDIVLALATNRPG---DLD---SAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQK 437 (512)
Q Consensus 366 ~~--~~viiI~ttN~~~---~l~---~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 437 (512)
.. .++.||++||.++ .++ +.+.+++...+.|++++.++..+++...+......
T Consensus 174 ~~~~~~v~lI~~~~~~~~~~~l~~~~~~~~~~~~~~i~l~~l~~~e~~~ll~~~~~~~~~~------------------- 234 (412)
T 1w5s_A 174 RDGVNRIGFLLVASDVRALSYMREKIPQVESQIGFKLHLPAYKSRELYTILEQRAELGLRD------------------- 234 (412)
T ss_dssp TTSCCBEEEEEEEEETHHHHHHHHHCHHHHTTCSEEEECCCCCHHHHHHHHHHHHHHHBCT-------------------
T ss_pred CCCCceEEEEEEeccccHHHHHhhhcchhhhhcCCeeeeCCCCHHHHHHHHHHHHHhcCCC-------------------
Confidence 13 6788888887654 344 66777876669999999999999998877643211
Q ss_pred hhhcCCCHHHHHHHHHHcC------CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 438 IEIKGLTDDILMEAAAKTE------GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 438 ~~~~~~~~~~l~~la~~t~------g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
..++++.+..++..+. | .++.+..++..+...+...+...++.+++..++...
T Consensus 235 ---~~~~~~~~~~i~~~~~~~~~~~G-~p~~~~~l~~~a~~~a~~~~~~~i~~~~v~~~~~~~ 293 (412)
T 1w5s_A 235 ---TVWEPRHLELISDVYGEDKGGDG-SARRAIVALKMACEMAEAMGRDSLSEDLVRKAVSEN 293 (412)
T ss_dssp ---TSCCHHHHHHHHHHHCGGGTSCC-CHHHHHHHHHHHHHHHHHTTCSSCCHHHHHHHHHHC
T ss_pred ---CCCChHHHHHHHHHHHHhccCCC-cHHHHHHHHHHHHHHHHHcCCCCCCHHHHHHHHHHH
Confidence 1277888999999987 6 688888888655444444444678888888877553
No 80
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=99.58 E-value=5e-15 Score=131.64 Aligned_cols=132 Identities=14% Similarity=0.164 Sum_probs=92.1
Q ss_pred ccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHH
Q 010366 240 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIH 316 (512)
Q Consensus 240 ~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~ 316 (512)
+++|.+.....+...+..... ...++||+||||||||++|++++... +.+|+ ++|+.+... ....
T Consensus 2 ~iiG~s~~~~~~~~~~~~~a~------~~~~vll~G~~GtGKt~lA~~i~~~~~~~~~~~v-~~~~~~~~~-----~~~~ 69 (145)
T 3n70_A 2 ELIGRSEWINQYRRRLQQLSE------TDIAVWLYGAPGTGRMTGARYLHQFGRNAQGEFV-YRELTPDNA-----PQLN 69 (145)
T ss_dssp --CCSSHHHHHHHHHHHHHTT------CCSCEEEESSTTSSHHHHHHHHHHSSTTTTSCCE-EEECCTTTS-----SCHH
T ss_pred CceeCCHHHHHHHHHHHHHhC------CCCCEEEECCCCCCHHHHHHHHHHhCCccCCCEE-EECCCCCcc-----hhhh
Confidence 578998888888665544321 12369999999999999999999986 67899 999887654 1223
Q ss_pred HHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-------CCCCHHHHcc
Q 010366 317 QLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-------GDLDSAVADR 389 (512)
Q Consensus 317 ~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-------~~l~~al~~R 389 (512)
..+..+. +++|||||+|.+ +...+..+..++ .....++.+|+|||.+ ..+.+.+..|
T Consensus 70 ~~~~~a~----~g~l~ldei~~l---------~~~~q~~Ll~~l---~~~~~~~~~I~~t~~~~~~~~~~~~~~~~L~~r 133 (145)
T 3n70_A 70 DFIALAQ----GGTLVLSHPEHL---------TREQQYHLVQLQ---SQEHRPFRLIGIGDTSLVELAASNHIIAELYYC 133 (145)
T ss_dssp HHHHHHT----TSCEEEECGGGS---------CHHHHHHHHHHH---HSSSCSSCEEEEESSCHHHHHHHSCCCHHHHHH
T ss_pred cHHHHcC----CcEEEEcChHHC---------CHHHHHHHHHHH---hhcCCCEEEEEECCcCHHHHHHcCCCCHHHHHH
Confidence 3455443 679999999997 334444454444 3345578899999974 3678888888
Q ss_pred ccc-eeecCCC
Q 010366 390 IDE-VLEFPLP 399 (512)
Q Consensus 390 ~~~-~i~~~~p 399 (512)
+.. .|.+|+.
T Consensus 134 l~~~~i~lPpL 144 (145)
T 3n70_A 134 FAMTQIACLPL 144 (145)
T ss_dssp HHHHEEECCCC
T ss_pred hcCCEEeCCCC
Confidence 743 3566653
No 81
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=99.56 E-value=3.2e-15 Score=154.56 Aligned_cols=307 Identities=18% Similarity=0.164 Sum_probs=194.4
Q ss_pred HHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhC
Q 010366 118 KLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILG 197 (512)
Q Consensus 118 ~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 197 (512)
....|+.+.++.++.. ++++.+.......+.....+++........+..+..++.+++.+|.....+...|.+.+.
T Consensus 42 ~~~~DlvllD~~mp~~----dG~ell~~lr~~~~~~pvIvlT~~~~~~~~~~a~~~Ga~dyl~KP~~~~~L~~~i~~~l~ 117 (387)
T 1ny5_A 42 EKHFNVVLLDLLLPDV----NGLEILKWIKERSPETEVIVITGHGTIKTAVEAMKMGAYDFLTKPCMLEEIELTINKAIE 117 (387)
T ss_dssp HSCCSEEEEESBCSSS----BHHHHHHHHHHHCTTSEEEEEEETTCHHHHHHHHTTTCCEEEEESCCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCC----CHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHhcCceEEecCCCCHHHHHHHHHHHHH
Confidence 3456777777766543 344444444433333333455666666667777778888999999988888888887765
Q ss_pred CCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCC
Q 010366 198 QPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPP 277 (512)
Q Consensus 198 ~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~Gpp 277 (512)
...+..+ ...+. .. .. ..+..++|.+.....+...+...+.. . .+++|+|++
T Consensus 118 ~~~l~~~---------------~~~l~---~~--~~--~~~~~~ig~s~~m~~l~~~i~~~a~~---~---~~vli~Ge~ 169 (387)
T 1ny5_A 118 HRKLRKE---------------NELLR---RE--KD--LKEEEYVFESPKMKEILEKIKKISCA---E---CPVLITGES 169 (387)
T ss_dssp HHHHHHH---------------HHHHH---HH--HH--TTCCCCCCCSHHHHHHHHHHHHHTTC---C---SCEEEECST
T ss_pred HHHHHHH---------------HHHhh---hh--hh--hcchhhhhccHHhhHHHHHHHHhcCC---C---CCeEEecCC
Confidence 3221110 00000 00 00 11567899888777776665554322 2 359999999
Q ss_pred CCchHHHHHHHHHHhC---CCeEEEeCCCCCCCchhHH-------------HHHHHHHHHHHhcCCCcEEEEccchhhhh
Q 010366 278 GTGKTMAARELARKSG---LDYALMTGGDVAPLGPQAV-------------TKIHQLFDWAKKSKRGLLLFIDEADAFLC 341 (512)
Q Consensus 278 GtGKT~lA~alA~~l~---~~~~~v~~~~~~~~~~~~~-------------~~l~~lf~~a~~~~~~~vl~lDEid~l~~ 341 (512)
|||||++|+++....+ .||+.++|+.++....++. ......|..+ .+++||||||+.+
T Consensus 170 GtGK~~lAr~ih~~s~r~~~~fv~v~~~~~~~~~~~~elfg~~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l-- 243 (387)
T 1ny5_A 170 GVGKEVVARLIHKLSDRSKEPFVALNVASIPRDIFEAELFGYEKGAFTGAVSSKEGFFELA----DGGTLFLDEIGEL-- 243 (387)
T ss_dssp TSSHHHHHHHHHHHSTTTTSCEEEEETTTSCHHHHHHHHHCBCTTSSTTCCSCBCCHHHHT----TTSEEEEESGGGC--
T ss_pred CcCHHHHHHHHHHhcCCCCCCeEEEecCCCCHHHHHHHhcCCCCCCCCCcccccCCceeeC----CCcEEEEcChhhC--
Confidence 9999999999988764 6899999998753110000 0001233333 2689999999997
Q ss_pred hcccCCCCHHHHHHHHHHHHHc-----CC---CCCCEEEEEeeCC-------CCCCCHHHHccccceeecCCCCH----H
Q 010366 342 ERNKTYMSEAQRSALNALLFRT-----GD---QSKDIVLALATNR-------PGDLDSAVADRIDEVLEFPLPGQ----E 402 (512)
Q Consensus 342 ~~~~~~~~~~~~~~l~~ll~~~-----~~---~~~~viiI~ttN~-------~~~l~~al~~R~~~~i~~~~p~~----~ 402 (512)
+...+..|..+++.- +. ...++.||+|||. ...+.+.+..|+ ..+.+..|+. +
T Consensus 244 -------~~~~q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~~~~g~fr~dl~~rl-~~~~i~lPpLreR~~ 315 (387)
T 1ny5_A 244 -------SLEAQAKLLRVIESGKFYRLGGRKEIEVNVRILAATNRNIKELVKEGKFREDLYYRL-GVIEIEIPPLRERKE 315 (387)
T ss_dssp -------CHHHHHHHHHHHHHSEECCBTCCSBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHH-TTEEEECCCGGGCHH
T ss_pred -------CHHHHHHHHHHHhcCcEEeCCCCceeeccEEEEEeCCCCHHHHHHcCCccHHHHHhh-cCCeecCCcchhccc
Confidence 567777777777752 11 2247889999997 357888888888 4444555555 4
Q ss_pred HHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCcc
Q 010366 403 ERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVL 482 (512)
Q Consensus 403 er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~i 482 (512)
++..++..++..+....+. ....++++.+..+..+.+..+.+++++++..+...+ .+..|
T Consensus 316 Di~~l~~~~l~~~~~~~~~-----------------~~~~~~~~a~~~l~~~~wpGNvreL~~~i~~~~~~~---~~~~i 375 (387)
T 1ny5_A 316 DIIPLANHFLKKFSRKYAK-----------------EVEGFTKSAQELLLSYPWYGNVRELKNVIERAVLFS---EGKFI 375 (387)
T ss_dssp HHHHHHHHHHHHHHHHTTC-----------------CCCEECHHHHHHHHHSCCTTHHHHHHHHHHHHHHHC---CSSEE
T ss_pred cHHHHHHHHHHHHHHHcCC-----------------CCCCCCHHHHHHHHhCCCCcHHHHHHHHHHHHHHhC---CCCcC
Confidence 4555666666554322111 112378999999998887777888888886554433 33689
Q ss_pred CHHHHHHH
Q 010366 483 DPSLFREV 490 (512)
Q Consensus 483 t~e~~~~a 490 (512)
+.+++...
T Consensus 376 ~~~~l~~~ 383 (387)
T 1ny5_A 376 DRGELSCL 383 (387)
T ss_dssp CHHHHHHH
T ss_pred cHHHCcHh
Confidence 98887544
No 82
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=99.54 E-value=4.1e-14 Score=145.24 Aligned_cols=284 Identities=16% Similarity=0.129 Sum_probs=183.9
Q ss_pred HHhhhhhHHhhHHHHHHHHHHHHHHHHHHhhhhhhhHHHHhhhhHHHHHHHHHHHHHHhhhhhcccchHHHHHHHHHHhC
Q 010366 118 KLAEDVNRRMLVDRANAEREKWIAAINTTFDHIGGGLRAILTDQNKLVVAVGGATALAAGIYTTREGAKVIWGYVDRILG 197 (512)
Q Consensus 118 ~~~~d~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~i~~~l~ 197 (512)
....|+.+.|+.++.. ++++.++......+.....+++........+.....++.+++.+|.....+...|.+.+.
T Consensus 42 ~~~~DlvllDi~mP~~----dG~ell~~lr~~~~~~pvI~lT~~~~~~~~~~a~~~Ga~~yl~KP~~~~~L~~~i~~~l~ 117 (368)
T 3dzd_A 42 ELFFPVIVLDVWMPDG----DGVNFIDFIKENSPDSVVIVITGHGSVDTAVKAIKKGAYEFLEKPFSVERFLLTIKHAFE 117 (368)
T ss_dssp HBCCSEEEEESEETTE----ETTTHHHHHHHHCTTCEEEEEECSSCCHHHHHHHHHTCCEEEESSCCHHHHHHHHHHHHH
T ss_pred hCCCCEEEEeCCCCCC----CHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHhcCcceEEeCCCCHHHHHHHHHHHHH
Confidence 4457877777776643 344444444433333333445554445556666777888999999998888888887765
Q ss_pred CCCccccccCCCCCcchhhhhhhhhccCCchhhhccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCC
Q 010366 198 QPSLIRESSRGKYPWSGLFSRTLKSLRGGDKELASKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPP 277 (512)
Q Consensus 198 ~~~~~~e~~~~~~~w~~~~~~~~~~l~~l~~~~~~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~Gpp 277 (512)
......+.. .-..++|.+.....+...+...+... ..++++|++
T Consensus 118 ~~~~~~~~~------------------------------~~~~~ig~s~~~~~~~~~~~~~a~~~------~~vli~Ges 161 (368)
T 3dzd_A 118 EYSKKAPPQ------------------------------EEIEFVGEHPKILEIKRLIPKIAKSK------APVLITGES 161 (368)
T ss_dssp HHSCCCCCC------------------------------CCCCCCCCSHHHHHHHHHHHHHHTSC------SCEEEECCT
T ss_pred Hhhhhhccc------------------------------ccccccccchHHHHHHhhhhhhhccc------hhheEEeCC
Confidence 432111000 01467888888887766665443222 249999999
Q ss_pred CCchHHHHHHHHHHhCC--CeEEEeCCCCCCCchhHHH-------------HHHHHHHHHHhcCCCcEEEEccchhhhhh
Q 010366 278 GTGKTMAARELARKSGL--DYALMTGGDVAPLGPQAVT-------------KIHQLFDWAKKSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 278 GtGKT~lA~alA~~l~~--~~~~v~~~~~~~~~~~~~~-------------~l~~lf~~a~~~~~~~vl~lDEid~l~~~ 342 (512)
||||+++|+++....+. +|+.++|+.++....++.- .-...|+.+ .+++||||||+.+
T Consensus 162 GtGKe~lAr~ih~~s~r~~~fv~vnc~~~~~~~~~~~lfg~~~g~~tga~~~~~g~~~~a----~~gtlfldei~~l--- 234 (368)
T 3dzd_A 162 GTGKEIVARLIHRYSGRKGAFVDLNCASIPQELAESELFGHEKGAFTGALTRKKGKLELA----DQGTLFLDEVGEL--- 234 (368)
T ss_dssp TSSHHHHHHHHHHHHCCCSCEEEEESSSSCTTTHHHHHHEECSCSSSSCCCCEECHHHHT----TTSEEEEETGGGS---
T ss_pred CchHHHHHHHHHHhccccCCcEEEEcccCChHHHHHHhcCccccccCCcccccCChHhhc----CCCeEEecChhhC---
Confidence 99999999999988754 3999999988653222110 001123333 3679999999997
Q ss_pred cccCCCCHHHHHHHHHHHHHcC-----C---CCCCEEEEEeeCCC-------CCCCHHHHccccc-eeecCCCCH--HHH
Q 010366 343 RNKTYMSEAQRSALNALLFRTG-----D---QSKDIVLALATNRP-------GDLDSAVADRIDE-VLEFPLPGQ--EER 404 (512)
Q Consensus 343 ~~~~~~~~~~~~~l~~ll~~~~-----~---~~~~viiI~ttN~~-------~~l~~al~~R~~~-~i~~~~p~~--~er 404 (512)
+...+..|..+++.-. . ...++.+|+|||.. ..+.+.+..|+.. .|.+|+... +++
T Consensus 235 ------~~~~Q~~Ll~~l~~~~~~~~g~~~~~~~~~rii~at~~~l~~~v~~g~fr~dL~~rl~~~~i~lPpLreR~~Di 308 (368)
T 3dzd_A 235 ------DQRVQAKLLRVLETGSFTRLGGNQKIEVDIRVISATNKNLEEEIKKGNFREDLYYRLSVFQIYLPPLRERGKDV 308 (368)
T ss_dssp ------CHHHHHHHHHHHHHSEECCBTCCCBEECCCEEEEEESSCHHHHHHTTSSCHHHHHHHTSEEEECCCGGGSTTHH
T ss_pred ------CHHHHHHHHHHHHhCCcccCCCCcceeeeeEEEEecCCCHHHHHHcCCccHHHHHHhCCeEEeCCChhhchhhH
Confidence 6677777877776521 1 12368899999863 4678889999843 245666554 566
Q ss_pred HHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHH
Q 010366 405 FKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQ 471 (512)
Q Consensus 405 ~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~ 471 (512)
..++..++.++...... ....++++++..|..+.+..+.+++.+++..+.
T Consensus 309 ~~l~~~~l~~~~~~~~~-----------------~~~~~~~~a~~~L~~~~wpGNvreL~n~i~~~~ 358 (368)
T 3dzd_A 309 ILLAEYFLKKFAKEYKK-----------------NCFELSEETKEYLMKQEWKGNVRELKNLIERAV 358 (368)
T ss_dssp HHHHHHHHHHHHHHTTC-----------------CCCCBCHHHHHHHHTCCCTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCC-----------------CCCCcCHHHHHHHHhCCCCcHHHHHHHHHHHHH
Confidence 66777777665432111 112489999999998876667788887775443
No 83
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=99.53 E-value=4.6e-15 Score=131.57 Aligned_cols=132 Identities=12% Similarity=0.188 Sum_probs=89.0
Q ss_pred ccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHH
Q 010366 240 DVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLF 319 (512)
Q Consensus 240 ~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf 319 (512)
+++|.+..+..+...+..... ...++||+||||||||++|++++...+ +++.++|+.+.. .....++
T Consensus 5 ~~iG~s~~~~~l~~~~~~~~~------~~~~vll~G~~GtGKt~lA~~i~~~~~-~~~~~~~~~~~~------~~~~~~~ 71 (143)
T 3co5_A 5 DKLGNSAAIQEMNREVEAAAK------RTSPVFLTGEAGSPFETVARYFHKNGT-PWVSPARVEYLI------DMPMELL 71 (143)
T ss_dssp ---CCCHHHHHHHHHHHHHHT------CSSCEEEEEETTCCHHHHHGGGCCTTS-CEECCSSTTHHH------HCHHHHH
T ss_pred CceeCCHHHHHHHHHHHHHhC------CCCcEEEECCCCccHHHHHHHHHHhCC-CeEEechhhCCh------HhhhhHH
Confidence 688999988888776654431 123699999999999999999999887 999999876432 1133445
Q ss_pred HHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC-CC----CCHHHHcccc-ce
Q 010366 320 DWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP-GD----LDSAVADRID-EV 393 (512)
Q Consensus 320 ~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~-~~----l~~al~~R~~-~~ 393 (512)
..+ .+++|||||+|.+ +...+..+..++... ...++.+|+|||.+ .. +++.+..|+. ..
T Consensus 72 ~~a----~~~~l~lDei~~l---------~~~~q~~Ll~~l~~~--~~~~~~iI~~tn~~~~~~~~~~~~~L~~rl~~~~ 136 (143)
T 3co5_A 72 QKA----EGGVLYVGDIAQY---------SRNIQTGITFIIGKA--ERCRVRVIASCSYAAGSDGISCEEKLAGLFSESV 136 (143)
T ss_dssp HHT----TTSEEEEEECTTC---------CHHHHHHHHHHHHHH--TTTTCEEEEEEEECTTTC--CHHHHHHHHSSSEE
T ss_pred HhC----CCCeEEEeChHHC---------CHHHHHHHHHHHHhC--CCCCEEEEEecCCCHHHHHhCccHHHHHHhcCcE
Confidence 443 2689999999997 344555555665544 24568889988864 33 4556677763 34
Q ss_pred eecCCC
Q 010366 394 LEFPLP 399 (512)
Q Consensus 394 i~~~~p 399 (512)
|.+|+.
T Consensus 137 i~lPpL 142 (143)
T 3co5_A 137 VRIPPL 142 (143)
T ss_dssp EEECCC
T ss_pred EeCCCC
Confidence 566653
No 84
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=99.51 E-value=5.3e-13 Score=145.80 Aligned_cols=224 Identities=19% Similarity=0.182 Sum_probs=143.8
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCC---eEEEeCCCCCCCc
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLD---YALMTGGDVAPLG 308 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~---~~~v~~~~~~~~~ 308 (512)
..++..|++++|++.+.+.+...+. .+ .+++|+||||||||++|+++|..+... .+.+.+.......
T Consensus 34 ~~rp~~l~~i~G~~~~l~~l~~~i~-------~g---~~vll~Gp~GtGKTtlar~ia~~l~~~~~~~~~~~~~~~~~~~ 103 (604)
T 3k1j_A 34 EVPEKLIDQVIGQEHAVEVIKTAAN-------QK---RHVLLIGEPGTGKSMLGQAMAELLPTETLEDILVFPNPEDENM 103 (604)
T ss_dssp CCCSSHHHHCCSCHHHHHHHHHHHH-------TT---CCEEEECCTTSSHHHHHHHHHHTSCCSSCEEEEEECCTTCTTS
T ss_pred cccccccceEECchhhHhhcccccc-------CC---CEEEEEeCCCCCHHHHHHHHhccCCcccCCeEEEeCCcccccC
Confidence 4667779999999999887765442 11 369999999999999999999987532 2222222111000
Q ss_pred --------hhHHH-------------------------------------------------HHHHHHHHH---------
Q 010366 309 --------PQAVT-------------------------------------------------KIHQLFDWA--------- 322 (512)
Q Consensus 309 --------~~~~~-------------------------------------------------~l~~lf~~a--------- 322 (512)
+.... ....+|...
T Consensus 104 p~i~~~p~g~~~~~~e~~~~~~~~~~~~r~~~~~~~~~~~~~nl~v~~~~~~~~~~v~~~~~~~~~L~G~~~~~~~~~g~ 183 (604)
T 3k1j_A 104 PRIKTVPACQGRRIVEKYREKAKSQESVKSSNMRLKSTVLVPKLLVDNCGRTKAPFIDATGAHAGALLGDVRHDPFQSGG 183 (604)
T ss_dssp CEEEEEETTHHHHHHHHHHHHHHHHTCC-----------CCCEEEECCTTCSSCCEEECTTCCHHHHHCEECCCCC----
T ss_pred CcEEEEecchHHHHHHHHHHhhccchhhhhhcccccccccccceeeccccCCCCCEEEcCCCCHHhcCceEEechhhcCC
Confidence 00000 001111100
Q ss_pred -------------HhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC------------------CCCCCEE
Q 010366 323 -------------KKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG------------------DQSKDIV 371 (512)
Q Consensus 323 -------------~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~------------------~~~~~vi 371 (512)
.....+++|||||++.+ +...+..|..+|+.-. ..+.++.
T Consensus 184 ~~~g~~~~i~~g~~~~a~~gvL~LDEi~~l---------~~~~q~~Ll~~Le~~~~~~~g~~~~~~~~~l~~~~~p~~~~ 254 (604)
T 3k1j_A 184 LGTPAHERVEPGMIHRAHKGVLFIDEIATL---------SLKMQQSLLTAMQEKKFPITGQSEMSSGAMVRTEPVPCDFV 254 (604)
T ss_dssp CCCCGGGGEECCHHHHTTTSEEEETTGGGS---------CHHHHHHHHHHHHHSEECCBCSCTTSGGGGCBCSCEECCCE
T ss_pred ccccccccccCceeeecCCCEEEEechhhC---------CHHHHHHHHHHHHcCcEEecccccccccccCCCCccceeEE
Confidence 00123679999999997 4455666666665321 1134688
Q ss_pred EEEeeCCC--CCCCHHHHcccc---ceeecCCC---CHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCC
Q 010366 372 LALATNRP--GDLDSAVADRID---EVLEFPLP---GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGL 443 (512)
Q Consensus 372 iI~ttN~~--~~l~~al~~R~~---~~i~~~~p---~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 443 (512)
||+|||.. ..++++|++||. ..+.|+.. +.+....+++.+........ ....+
T Consensus 255 vI~atn~~~~~~l~~~l~~R~~v~~i~i~l~~~~~~~~~~~~~~l~~~~~~~~~~~-------------------~~~~l 315 (604)
T 3k1j_A 255 LVAAGNLDTVDKMHPALRSRIRGYGYEVYMRTTMPDTIENRRKLVQFVAQEVKRDG-------------------KIPHF 315 (604)
T ss_dssp EEEEECHHHHHHSCHHHHHHHHHHSEEEECCSEEECCHHHHHHHHHHHHHHHHHHC-------------------SSCCB
T ss_pred EEEecCHHHHhhcCHHHHHHhhccceEeeccccccCCHHHHHHHHHHHHHHHhhcc-------------------CcccC
Confidence 99999986 679999999996 45566443 34556666655444332110 11238
Q ss_pred CHHHHHHHHHHc---CCC------cHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHH
Q 010366 444 TDDILMEAAAKT---EGF------SGREIAKLMASVQAAVYGSENCVLDPSLFREVVDY 493 (512)
Q Consensus 444 ~~~~l~~la~~t---~g~------s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~ 493 (512)
+++.+..|+..+ .|- +.|++.+++..+...+.......|+.+|+.+|+..
T Consensus 316 s~eAl~~Li~~~~r~~g~r~~l~~~~R~l~~llr~A~~~A~~~~~~~I~~edv~~A~~~ 374 (604)
T 3k1j_A 316 TKEAVEEIVREAQKRAGRKGHLTLRLRDLGGIVRAAGDIAVKKGKKYVEREDVIEAVKM 374 (604)
T ss_dssp BHHHHHHHHHHHHHTTCSTTEEECCHHHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhccccccccCHHHHHHHHHHHHHHHHhcCcccccHHHHHHHHHh
Confidence 899999988765 442 68999999988777766666689999999999965
No 85
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=99.49 E-value=1.1e-13 Score=138.18 Aligned_cols=143 Identities=15% Similarity=0.122 Sum_probs=106.8
Q ss_pred cChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh------CCCeEEEeCCCCCCCchhHHHHHH
Q 010366 243 LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS------GLDYALMTGGDVAPLGPQAVTKIH 316 (512)
Q Consensus 243 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l------~~~~~~v~~~~~~~~~~~~~~~l~ 316 (512)
|++++.+.+...+. . +. ..++|||||||||||++|+++|+.+ ..++..++++.- ......++
T Consensus 1 g~~~~~~~L~~~i~------~-~~-~~~~Lf~Gp~G~GKtt~a~~la~~~~~~~~~~~d~~~l~~~~~----~~~id~ir 68 (305)
T 2gno_A 1 GAKDQLETLKRIIE------K-SE-GISILINGEDLSYPREVSLELPEYVEKFPPKASDVLEIDPEGE----NIGIDDIR 68 (305)
T ss_dssp ---CHHHHHHHHHH------T-CS-SEEEEEECSSSSHHHHHHHHHHHHHHTSCCCTTTEEEECCSSS----CBCHHHHH
T ss_pred ChHHHHHHHHHHHH------C-CC-CcEEEEECCCCCCHHHHHHHHHHhCchhhccCCCEEEEcCCcC----CCCHHHHH
Confidence 45666666655442 1 22 3489999999999999999999874 346777765421 12344566
Q ss_pred HHHHHHHhcC---CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccce
Q 010366 317 QLFDWAKKSK---RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEV 393 (512)
Q Consensus 317 ~lf~~a~~~~---~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~ 393 (512)
.+++.+...+ ++.|+||||+|.+. ....+.|+..+++++.+++||++||.+..+.|++.+| +
T Consensus 69 ~li~~~~~~p~~~~~kvviIdead~lt------------~~a~naLLk~LEep~~~t~fIl~t~~~~kl~~tI~SR---~ 133 (305)
T 2gno_A 69 TIKDFLNYSPELYTRKYVIVHDCERMT------------QQAANAFLKALEEPPEYAVIVLNTRRWHYLLPTIKSR---V 133 (305)
T ss_dssp HHHHHHTSCCSSSSSEEEEETTGGGBC------------HHHHHHTHHHHHSCCTTEEEEEEESCGGGSCHHHHTT---S
T ss_pred HHHHHHhhccccCCceEEEeccHHHhC------------HHHHHHHHHHHhCCCCCeEEEEEECChHhChHHHHce---e
Confidence 6777765432 24699999999972 2346778888888889999999999999999999999 8
Q ss_pred eecCCCCHHHHHHHHHHHH
Q 010366 394 LEFPLPGQEERFKLLKLYL 412 (512)
Q Consensus 394 i~~~~p~~~er~~Il~~~l 412 (512)
+.|++|+.++...++...+
T Consensus 134 ~~f~~l~~~~i~~~L~~~~ 152 (305)
T 2gno_A 134 FRVVVNVPKEFRDLVKEKI 152 (305)
T ss_dssp EEEECCCCHHHHHHHHHHH
T ss_pred EeCCCCCHHHHHHHHHHHh
Confidence 9999999999999998775
No 86
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=99.27 E-value=1.5e-10 Score=142.45 Aligned_cols=139 Identities=20% Similarity=0.304 Sum_probs=97.0
Q ss_pred cceEEecCCCCchHHHHHHH-HHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHh--------------cCCCcEEEE
Q 010366 269 RNMLFYGPPGTGKTMAAREL-ARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKK--------------SKRGLLLFI 333 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~al-A~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~--------------~~~~~vl~l 333 (512)
+++||+||||||||++|+.+ +...+.+++.++++.... ...+...++.... ....+||||
T Consensus 1268 ~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts-----~~~~~~~i~~~~~~~~~~~g~~~~P~~~gk~~VlFi 1342 (2695)
T 4akg_A 1268 RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTT-----TEHILSALHRHTNYVTTSKGLTLLPKSDIKNLVLFC 1342 (2695)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCC-----HHHHHHHHHHHBCCEEETTTEEEEEBSSSSCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCC-----HHHHHHHHHHHhhhccccCCccccCCCCCceEEEEe
Confidence 36999999999999999554 544467788888766542 1233334433210 112469999
Q ss_pred ccchhhhhhcccCCCCHHHHHHHHHHHHHcC--C-CC------CCEEEEEeeCCCC-----CCCHHHHccccceeecCCC
Q 010366 334 DEADAFLCERNKTYMSEAQRSALNALLFRTG--D-QS------KDIVLALATNRPG-----DLDSAVADRIDEVLEFPLP 399 (512)
Q Consensus 334 DEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~-~~------~~viiI~ttN~~~-----~l~~al~~R~~~~i~~~~p 399 (512)
||++.....+.+ .....+.+..++..-+ + .. .++.+|+|||.+. .++|+++||| .++.++.|
T Consensus 1343 DEinmp~~d~yg---~q~~lelLRq~le~gg~yd~~~~~~~~~~~i~lIaA~Npp~~gGR~~l~~rllRrf-~vi~i~~P 1418 (2695)
T 4akg_A 1343 DEINLPKLDKYG---SQNVVLFLRQLMEKQGFWKTPENKWVTIERIHIVGACNPPTDPGRIPMSERFTRHA-AILYLGYP 1418 (2695)
T ss_dssp ETTTCSCCCSSS---CCHHHHHHHHHHHTSSEECTTTCCEEEEESEEEEEEECCTTSTTCCCCCHHHHTTE-EEEECCCC
T ss_pred cccccccccccC---chhHHHHHHHHHhcCCEEEcCCCcEEEecCEEEEEecCCCccCCCccCChhhhhee-eEEEeCCC
Confidence 999863322221 2245667777775422 1 11 2589999999984 7999999999 99999999
Q ss_pred CHHHHHHHHHHHHHHHh
Q 010366 400 GQEERFKLLKLYLDKYI 416 (512)
Q Consensus 400 ~~~er~~Il~~~l~~~~ 416 (512)
+.+++..|+..++....
T Consensus 1419 ~~~~l~~I~~~il~~~l 1435 (2695)
T 4akg_A 1419 SGKSLSQIYEIYYKAIF 1435 (2695)
T ss_dssp TTTHHHHHHHHHHHHHT
T ss_pred CHHHHHHHHHHHHHHHh
Confidence 99999999999987654
No 87
>3f8t_A Predicted ATPase involved in replication control, CDC46/MCM family; helicase, MCM homolog, DNA replication, ATP-binding, DNA-binding; 1.90A {Methanopyrus kandleri AV19}
Probab=99.25 E-value=8.7e-11 Score=121.74 Aligned_cols=194 Identities=16% Similarity=0.048 Sum_probs=115.2
Q ss_pred ceEEecCCCCchHHHHHHH-HHHhCCCeEEEeCCCCCCCch---h-----HHHHHHHHHHHHHhcCCCcEEEEccchhhh
Q 010366 270 NMLFYGPPGTGKTMAAREL-ARKSGLDYALMTGGDVAPLGP---Q-----AVTKIHQLFDWAKKSKRGLLLFIDEADAFL 340 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~al-A~~l~~~~~~v~~~~~~~~~~---~-----~~~~l~~lf~~a~~~~~~~vl~lDEid~l~ 340 (512)
|+||.|+||| ||++|+++ +..+.. .++..+. .+...+ . ....-...+..| .++++|+|||+.+
T Consensus 241 hVLL~G~PGt-KS~Lar~i~~~i~pR-~~ft~g~-~ss~~gLt~s~r~~tG~~~~~G~l~LA----dgGvl~lDEIn~~- 312 (506)
T 3f8t_A 241 HVLLAGYPVV-CSEILHHVLDHLAPR-GVYVDLR-RTELTDLTAVLKEDRGWALRAGAAVLA----DGGILAVDHLEGA- 312 (506)
T ss_dssp CEEEESCHHH-HHHHHHHHHHHTCSS-EEEEEGG-GCCHHHHSEEEEESSSEEEEECHHHHT----TTSEEEEECCTTC-
T ss_pred eEEEECCCCh-HHHHHHHHHHHhCCC-eEEecCC-CCCccCceEEEEcCCCcccCCCeeEEc----CCCeeehHhhhhC-
Confidence 7999999999 99999999 665433 2222211 000000 0 000000112222 2689999999996
Q ss_pred hhcccCCCCHHHHHHHHHHHHHcC------CCCCCEEEEEeeCCCC-----------CCCHHHHcccccee-ecCCCCHH
Q 010366 341 CERNKTYMSEAQRSALNALLFRTG------DQSKDIVLALATNRPG-----------DLDSAVADRIDEVL-EFPLPGQE 402 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~l~~ll~~~~------~~~~~viiI~ttN~~~-----------~l~~al~~R~~~~i-~~~~p~~~ 402 (512)
+...+..|...++.-. ..+.++.||+|+|... .+++++++|||..+ .++.|+.+
T Consensus 313 --------~~~~qsaLlEaMEe~~VtI~G~~lparf~VIAA~NP~~~yd~~~s~~~~~Lp~alLDRFDLi~i~~d~pd~e 384 (506)
T 3f8t_A 313 --------PEPHRWALMEAMDKGTVTVDGIALNARCAVLAAINPGEQWPSDPPIARIDLDQDFLSHFDLIAFLGVDPRPG 384 (506)
T ss_dssp --------CHHHHHHHHHHHHHSEEEETTEEEECCCEEEEEECCCC--CCSCGGGGCCSCHHHHTTCSEEEETTC-----
T ss_pred --------CHHHHHHHHHHHhCCcEEECCEEcCCCeEEEEEeCcccccCCCCCccccCCChHHhhheeeEEEecCCCChh
Confidence 5566666666665411 2346789999999865 78899999998755 45666554
Q ss_pred HHH---------HHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHH-----------------HcC
Q 010366 403 ERF---------KLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAA-----------------KTE 456 (512)
Q Consensus 403 er~---------~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~-----------------~t~ 456 (512)
.-. +.++.+..... .......++++..++|.. ...
T Consensus 385 ~d~e~~~~~ls~e~L~~yi~~ar-------------------~~~~~p~ls~ea~~yI~~~y~~tR~~~~~~~~~~~~~~ 445 (506)
T 3f8t_A 385 EPEEQDTEVPSYTLLRRYLLYAI-------------------REHPAPELTEEARKRLEHWYETRREEVEERLGMGLPTL 445 (506)
T ss_dssp ---------CCHHHHHHHHHHHH-------------------HHCSCCEECHHHHHHHHHHHHHHHHHHHHHHHTTCCCC
T ss_pred HhhcccCCCCCHHHHHHHHHHHH-------------------hcCCCceeCHHHHHHHHHHHHHHhcCcccccccccccc
Confidence 321 11111111110 000011244444433332 134
Q ss_pred CCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHHHHH
Q 010366 457 GFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKVAEH 498 (512)
Q Consensus 457 g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~~~~ 498 (512)
|.|+|.+..|++.+++.+.-.....++.+|+..|+.-.....
T Consensus 446 giSpR~leaLiRlA~A~A~L~gR~~V~~eDV~~Ai~L~~~Sl 487 (506)
T 3f8t_A 446 PVTRRQLESVERLAKAHARMRLSDDVEPEDVDIAAELVDWYL 487 (506)
T ss_dssp CCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHcCcCCCCHHHHHHHHHHHHHHH
Confidence 789999999999999999888889999999999998765543
No 88
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=99.21 E-value=1.3e-11 Score=113.29 Aligned_cols=135 Identities=15% Similarity=0.105 Sum_probs=77.5
Q ss_pred cCCCCCCccccC-hHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCCCCCC
Q 010366 233 KNGNGFGDVILH-PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDVAPL 307 (512)
Q Consensus 233 ~~~~~~~~vvg~-~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~~~~~ 307 (512)
+.+.+|+++++. +.....+..+.....+.... +..+++|+||||||||+++++++..+ |..++++++.++...
T Consensus 4 ~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~--~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~~~~~~~~~ 81 (180)
T 3ec2_A 4 YWNANLDTYHPKNVSQNRALLTIRVFVHNFNPE--EGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFFDTKDLIFR 81 (180)
T ss_dssp CTTCCSSSCCCCSHHHHHHHHHHHHHHHSCCGG--GCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEEEHHHHHHH
T ss_pred hhhCccccccCCCHHHHHHHHHHHHHHHhcccc--CCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEEEHHHHHHH
Confidence 455679999884 44444554444444433221 23579999999999999999999876 556666654332110
Q ss_pred chhHHH--HHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCC
Q 010366 308 GPQAVT--KIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGD 381 (512)
Q Consensus 308 ~~~~~~--~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~ 381 (512)
...... .....+.. ...+.+|+|||++... ........+..++.... ..+..+|+|||.+..
T Consensus 82 ~~~~~~~~~~~~~~~~---~~~~~llilDE~~~~~-------~~~~~~~~l~~ll~~~~--~~~~~ii~tsn~~~~ 145 (180)
T 3ec2_A 82 LKHLMDEGKDTKFLKT---VLNSPVLVLDDLGSER-------LSDWQRELISYIITYRY--NNLKSTIITTNYSLQ 145 (180)
T ss_dssp HHHHHHHTCCSHHHHH---HHTCSEEEEETCSSSC-------CCHHHHHHHHHHHHHHH--HTTCEEEEECCCCSC
T ss_pred HHHHhcCchHHHHHHH---hcCCCEEEEeCCCCCc-------CCHHHHHHHHHHHHHHH--HcCCCEEEEcCCChh
Confidence 000000 00011111 1247899999998531 23455566666665542 234567778887543
No 89
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=99.14 E-value=1.2e-10 Score=103.73 Aligned_cols=106 Identities=15% Similarity=0.226 Sum_probs=70.1
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhc
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCER 343 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~ 343 (512)
+...++|+||+|+|||+++++++..+ |...+++++.++.... + ...+.+|+|||++.+..
T Consensus 35 ~g~~~~l~G~~G~GKTtL~~~i~~~~~~~g~~~~~~~~~~~~~~~---------~------~~~~~lLilDE~~~~~~-- 97 (149)
T 2kjq_A 35 HGQFIYVWGEEGAGKSHLLQAWVAQALEAGKNAAYIDAASMPLTD---------A------AFEAEYLAVDQVEKLGN-- 97 (149)
T ss_dssp CCSEEEEESSSTTTTCHHHHHHHHHHHTTTCCEEEEETTTSCCCG---------G------GGGCSEEEEESTTCCCS--
T ss_pred CCCEEEEECCCCCCHHHHHHHHHHHHHhcCCcEEEEcHHHhhHHH---------H------HhCCCEEEEeCccccCh--
Confidence 34579999999999999999999887 6778888887765440 0 12368999999988522
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC-CCCCC--HHHHccccceeecC
Q 010366 344 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR-PGDLD--SAVADRIDEVLEFP 397 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~-~~~l~--~al~~R~~~~i~~~ 397 (512)
..+..+..++....+.. ..++|+|||. |..+. +.+.+|+..-..+.
T Consensus 98 -------~~~~~l~~li~~~~~~g-~~~iiits~~~p~~l~~~~~L~SRl~~g~~~~ 146 (149)
T 2kjq_A 98 -------EEQALLFSIFNRFRNSG-KGFLLLGSEYTPQQLVIREDLRTRMAYCLVYE 146 (149)
T ss_dssp -------HHHHHHHHHHHHHHHHT-CCEEEEEESSCTTTSSCCHHHHHHGGGSEECC
T ss_pred -------HHHHHHHHHHHHHHHcC-CcEEEEECCCCHHHccccHHHHHHHhcCeeEE
Confidence 12444555555442222 2235556664 44332 89999996555443
No 90
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=99.06 E-value=1e-10 Score=109.19 Aligned_cols=102 Identities=19% Similarity=0.187 Sum_probs=59.9
Q ss_pred CCCCCCccccChHH-HHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCch
Q 010366 234 NGNGFGDVILHPSL-QKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGP 309 (512)
Q Consensus 234 ~~~~~~~vvg~~~~-~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~ 309 (512)
...+|+++++.+.. ...+..+.......... .++.+++|+||||||||++|++++..+ +.+++++++.++.....
T Consensus 20 ~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~~~~~~~~~~ 98 (202)
T 2w58_A 20 LRASLSDVDLNDDGRIKAIRFAERFVAEYEPG-KKMKGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVYVPELFRELK 98 (202)
T ss_dssp GCCCTTSSCCSSHHHHHHHHHHHHHHHHCCSS-CCCCEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEEHHHHHHHHH
T ss_pred HcCCHhhccCCChhHHHHHHHHHHHHHHhhhc-cCCCeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEhHHHHHHHH
Confidence 45679999987643 33434333333322211 123689999999999999999999887 56777777654311000
Q ss_pred hH--HHHHHHHHHHHHhcCCCcEEEEccchhh
Q 010366 310 QA--VTKIHQLFDWAKKSKRGLLLFIDEADAF 339 (512)
Q Consensus 310 ~~--~~~l~~lf~~a~~~~~~~vl~lDEid~l 339 (512)
.. ...+..++..... +.+|||||++..
T Consensus 99 ~~~~~~~~~~~~~~~~~---~~~lilDei~~~ 127 (202)
T 2w58_A 99 HSLQDQTMNEKLDYIKK---VPVLMLDDLGAE 127 (202)
T ss_dssp HC---CCCHHHHHHHHH---SSEEEEEEECCC
T ss_pred HHhccchHHHHHHHhcC---CCEEEEcCCCCC
Confidence 00 0001112222222 469999999764
No 91
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=99.02 E-value=7.4e-09 Score=104.16 Aligned_cols=187 Identities=12% Similarity=0.099 Sum_probs=111.8
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCC------CC---
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA------PL--- 307 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~------~~--- 307 (512)
.-..++|.+.....+...+.. + +.++|+||+|+|||++++.+++..+ ++++++.... +.
T Consensus 10 ~~~~~~gR~~el~~L~~~l~~-------~---~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~ 77 (350)
T 2qen_A 10 RREDIFDREEESRKLEESLEN-------Y---PLTLLLGIRRVGKSSLLRAFLNERP--GILIDCRELYAERGHITREEL 77 (350)
T ss_dssp SGGGSCSCHHHHHHHHHHHHH-------C---SEEEEECCTTSSHHHHHHHHHHHSS--EEEEEHHHHHHTTTCBCHHHH
T ss_pred ChHhcCChHHHHHHHHHHHhc-------C---CeEEEECCCcCCHHHHHHHHHHHcC--cEEEEeecccccccCCCHHHH
Confidence 347789999988888765532 1 4799999999999999999998875 6666653221 00
Q ss_pred -------------------------c------hhHHHH-HHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHH
Q 010366 308 -------------------------G------PQAVTK-IHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSA 355 (512)
Q Consensus 308 -------------------------~------~~~~~~-l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~ 355 (512)
+ ...... +..+...+.... +.+|+|||++.+..... ..+......
T Consensus 78 ~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~vlvlDe~~~~~~~~~--~~~~~~~~~ 154 (350)
T 2qen_A 78 IKELQSTISPFQKFQSKFKISLNLKFLTLEPRKLSLREVFRELNDLGEELG-EFIVAFDEAQYLRFYGS--RGGKELLAL 154 (350)
T ss_dssp HHHHHHHSCSHHHHHHHHTCCCCCGGGTSCGGGCCHHHHHHHHHHHHHHHS-CEEEEEETGGGGGGBTT--TTTHHHHHH
T ss_pred HHHHHHHHHHHHhHhhhceeEEEecceeeccccchHHHHHHHHHHHHhccC-CEEEEEeCHHHHhccCc--cchhhHHHH
Confidence 0 001111 111222222223 78999999999743100 001233344
Q ss_pred HHHHHHHcCCCCCCEEEEEeeCCCC---------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcc
Q 010366 356 LNALLFRTGDQSKDIVLALATNRPG---------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIAQAGSRKPGL 426 (512)
Q Consensus 356 l~~ll~~~~~~~~~viiI~ttN~~~---------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~ 426 (512)
+..++... .++.+|+|+.... .....+..|+...+.+++++.++..+++...+.....
T Consensus 155 L~~~~~~~----~~~~~il~g~~~~~l~~~l~~~~~~~~l~~~~~~~i~l~pl~~~e~~~~l~~~~~~~~~--------- 221 (350)
T 2qen_A 155 FAYAYDSL----PNLKIILTGSEVGLLHDFLKITDYESPLYGRIAGEVLVKPFDKDTSVEFLKRGFREVNL--------- 221 (350)
T ss_dssp HHHHHHHC----TTEEEEEEESSHHHHHHHHCTTCTTSTTTTCCCEEEECCCCCHHHHHHHHHHHHHTTTC---------
T ss_pred HHHHHHhc----CCeEEEEECCcHHHHHHHHhhcCCCCccccCccceeeCCCCCHHHHHHHHHHHHHHcCC---------
Confidence 44444332 4677777765421 1222344466568999999999999998876543211
Q ss_pred hhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHH
Q 010366 427 VHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLM 467 (512)
Q Consensus 427 ~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv 467 (512)
.++++.+..+...+.|+ |.-+..++
T Consensus 222 ---------------~~~~~~~~~i~~~tgG~-P~~l~~~~ 246 (350)
T 2qen_A 222 ---------------DVPENEIEEAVELLDGI-PGWLVVFG 246 (350)
T ss_dssp ---------------CCCHHHHHHHHHHHTTC-HHHHHHHH
T ss_pred ---------------CCCHHHHHHHHHHhCCC-HHHHHHHH
Confidence 15566777777777664 55555554
No 92
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=98.97 E-value=8.1e-09 Score=104.06 Aligned_cols=157 Identities=16% Similarity=0.140 Sum_probs=98.8
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCC----CCchhH-
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVA----PLGPQA- 311 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~----~~~~~~- 311 (512)
....++|.+.....+.. +. . +.++|+||+|+|||++++.+++..+.+++++++.... ......
T Consensus 11 ~~~~~~gR~~el~~L~~-l~---~--------~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 78 (357)
T 2fna_A 11 NRKDFFDREKEIEKLKG-LR---A--------PITLVLGLRRTGKSSIIKIGINELNLPYIYLDLRKFEERNYISYKDFL 78 (357)
T ss_dssp SGGGSCCCHHHHHHHHH-TC---S--------SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEEGGGGTTCSCCCHHHHH
T ss_pred CHHHhcChHHHHHHHHH-hc---C--------CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEEchhhccccCCCHHHHH
Confidence 34778999887777754 31 1 3799999999999999999999988778888865431 000000
Q ss_pred ------------------------------------------HHHHHHHHHHHHhcC-CCcEEEEccchhhhhhcccCCC
Q 010366 312 ------------------------------------------VTKIHQLFDWAKKSK-RGLLLFIDEADAFLCERNKTYM 348 (512)
Q Consensus 312 ------------------------------------------~~~l~~lf~~a~~~~-~~~vl~lDEid~l~~~~~~~~~ 348 (512)
...+..++....... .+.+|+|||++.+......
T Consensus 79 ~~l~~~l~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~vlvlDe~~~~~~~~~~--- 155 (357)
T 2fna_A 79 LELQKEINKLVKRLPSLLKALKNIQGIVIMGNEIKFNWNRKDRLSFANLLESFEQASKDNVIIVLDEAQELVKLRGV--- 155 (357)
T ss_dssp HHHHHHHHHHHHHCTTHHHHTTTSTTEEECSSSEEEC-----CCCHHHHHHHHHHTCSSCEEEEEETGGGGGGCTTC---
T ss_pred HHHHHHHHHHhhhhhHHHHHhcccceEEecceEEEeccCCcchhhHHHHHHHHHhcCCCCeEEEEECHHHhhccCch---
Confidence 011233444443332 2789999999997542111
Q ss_pred CHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC---------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHH
Q 010366 349 SEAQRSALNALLFRTGDQSKDIVLALATNRPG---------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDK 414 (512)
Q Consensus 349 ~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~---------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~ 414 (512)
.....+..+.... .++.+|+|++... .....+..|+...+.+++++.++..+++...+..
T Consensus 156 --~~~~~l~~~~~~~----~~~~~i~~g~~~~~l~~~l~~~~~~~~l~~r~~~~i~l~~l~~~e~~~~l~~~~~~ 224 (357)
T 2fna_A 156 --NLLPALAYAYDNL----KRIKFIMSGSEMGLLYDYLRVEDPESPLFGRAFSTVELKPFSREEAIEFLRRGFQE 224 (357)
T ss_dssp --CCHHHHHHHHHHC----TTEEEEEEESSHHHHHHHTTTTCTTSTTTTCCCEEEEECCCCHHHHHHHHHHHHHH
T ss_pred --hHHHHHHHHHHcC----CCeEEEEEcCchHHHHHHHhccCCCCccccCccceeecCCCCHHHHHHHHHHHHHH
Confidence 1123344444322 3677777776431 1122344466578999999999999999887654
No 93
>1jr3_D DNA polymerase III, delta subunit; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1jqj_C* 1xxh_A* 1xxi_A* 3glf_A* 3glg_A* 3glh_A* 3gli_A*
Probab=98.93 E-value=8.9e-09 Score=104.20 Aligned_cols=180 Identities=14% Similarity=0.057 Sum_probs=121.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CC-CeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchh-hhhhc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GL-DYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA-FLCER 343 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~-~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~-l~~~~ 343 (512)
..+|||||+|+||++.++.++..+ +. ++..+.... ......+........-..++-||+|||++. +.
T Consensus 19 ~~yl~~G~e~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~plf~~~kvvii~~~~~kl~--- 90 (343)
T 1jr3_D 19 AAYLLLGNDPLLLQESQDAVRQVAAAQGFEEHHTFSIDP-----NTDWNAIFSLCQAMSLFASRQTLLLLLPENGPN--- 90 (343)
T ss_dssp SEEEEEESCHHHHHHHHHHHHHHHHHHTCCEEEEEECCT-----TCCHHHHHHHHHHHHHCCSCEEEEEECCSSCCC---
T ss_pred cEEEEECCcHHHHHHHHHHHHHHHHhCCCCeeEEEEecC-----CCCHHHHHHHhcCcCCccCCeEEEEECCCCCCC---
Confidence 479999999999999999998865 22 222222111 111222222222222234567999999987 52
Q ss_pred ccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC------CCCHHHHccccceeecCCCCHHHHHHHHHHHHHHHhh
Q 010366 344 NKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG------DLDSAVADRIDEVLEFPLPGQEERFKLLKLYLDKYIA 417 (512)
Q Consensus 344 ~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~------~l~~al~~R~~~~i~~~~p~~~er~~Il~~~l~~~~~ 417 (512)
....+.|+..+++.+.++++|++++.++ .+.+.+.+|+ .++.|.+++..+....+...+...+.
T Consensus 91 ---------~~~~~aLl~~le~p~~~~~~il~~~~~~~~~~~~k~~~~i~sr~-~~~~~~~l~~~~l~~~l~~~~~~~g~ 160 (343)
T 1jr3_D 91 ---------AAINEQLLTLTGLLHDDLLLIVRGNKLSKAQENAAWFTALANRS-VQVTCQTPEQAQLPRWVAARAKQLNL 160 (343)
T ss_dssp ---------TTHHHHHHHHHTTCBTTEEEEEEESCCCTTTTTSHHHHHHTTTC-EEEEECCCCTTHHHHHHHHHHHHTTC
T ss_pred ---------hHHHHHHHHHHhcCCCCeEEEEEcCCCChhhHhhHHHHHHHhCc-eEEEeeCCCHHHHHHHHHHHHHHcCC
Confidence 1244566666777777888887776543 4567888899 88999999999999999888876432
Q ss_pred hhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHH
Q 010366 418 QAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYK 494 (512)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~ 494 (512)
. ++++.+..|+..+.| +.+++.+.+..+... . ++..||.+++...+...
T Consensus 161 ~------------------------i~~~a~~~l~~~~~g-dl~~~~~elekl~l~--~-~~~~It~e~V~~~~~~~ 209 (343)
T 1jr3_D 161 E------------------------LDDAANQVLCYCYEG-NLLALAQALERLSLL--W-PDGKLTLPRVEQAVNDA 209 (343)
T ss_dssp E------------------------ECHHHHHHHHHSSTT-CHHHHHHHHHHHHHH--C-TTCEECHHHHHHHHHHH
T ss_pred C------------------------CCHHHHHHHHHHhch-HHHHHHHHHHHHHHh--c-CCCCCCHHHHHHHHhhh
Confidence 2 889999999988865 566666655544332 2 23579999988876543
No 94
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=98.92 E-value=8.3e-08 Score=118.42 Aligned_cols=148 Identities=18% Similarity=0.219 Sum_probs=106.4
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQL 318 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~l 318 (512)
..+|-.|-....+..+..+.... .+.++.||+|||||++++++|+.+|.+++.++|++-... ..+..+
T Consensus 623 ~rlViTPltdr~~~tl~~Al~~~-------~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~e~ld~-----~~lg~~ 690 (2695)
T 4akg_A 623 ERLIYTPLLLIGFATLTDSLHQK-------YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCDDSFDY-----QVLSRL 690 (2695)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTT-------CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETTSSCCH-----HHHHHH
T ss_pred CcceecHHHHHHHHHHHHHHHhC-------CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECCCCCCh-----hHhhHH
Confidence 45677777766665555444322 258999999999999999999999999999999875532 344556
Q ss_pred HHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH----cC-------------CCCCCEEEEEeeCC---
Q 010366 319 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR----TG-------------DQSKDIVLALATNR--- 378 (512)
Q Consensus 319 f~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~----~~-------------~~~~~viiI~ttN~--- 378 (512)
|..+... +++++||||+.+ ......++...+.. +. ....++.|++|.|.
T Consensus 691 ~~g~~~~--Gaw~~~DE~nr~---------~~evLs~l~~~l~~i~~al~~~~~~i~~~g~~i~l~~~~~vfiT~NPgy~ 759 (2695)
T 4akg_A 691 LVGITQI--GAWGCFDEFNRL---------DEKVLSAVSANIQQIQNGLQVGKSHITLLEEETPLSPHTAVFITLNPGYN 759 (2695)
T ss_dssp HHHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEEECSSSEEECCTTCEEEEEECCCSS
T ss_pred HHHHHhc--CCEeeehhhhhc---------ChHHHHHHHHHHHHHHHHHHcCCcEEeeCCcEEecCCCceEEEEeCCCcc
Confidence 6666544 689999999986 33444444333321 10 12346778889984
Q ss_pred -CCCCCHHHHccccceeecCCCCHHHHHHHHHH
Q 010366 379 -PGDLDSAVADRIDEVLEFPLPGQEERFKLLKL 410 (512)
Q Consensus 379 -~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~ 410 (512)
...+++++.+|| ..+.+..|+.+...+|+-.
T Consensus 760 g~~eLP~~Lk~~F-r~v~m~~Pd~~~i~ei~l~ 791 (2695)
T 4akg_A 760 GRSELPENLKKSF-REFSMKSPQSGTIAEMILQ 791 (2695)
T ss_dssp SSCCCCHHHHTTE-EEEECCCCCHHHHHHHHHH
T ss_pred CcccccHHHHhhe-EEEEeeCCCHHHHHHHHHH
Confidence 457999999999 8899999999988887643
No 95
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=98.91 E-value=3.2e-09 Score=98.56 Aligned_cols=109 Identities=17% Similarity=0.138 Sum_probs=63.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYM 348 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~ 348 (512)
++++||||||||||++|.++|+.+...++.+..+. .... ........+|+|||++.-.
T Consensus 59 n~ili~GPPGtGKTt~a~ala~~l~g~i~~fans~-s~f~-------------l~~l~~~kIiiLDEad~~~-------- 116 (212)
T 1tue_A 59 NCLVFCGPANTGKSYFGMSFIHFIQGAVISFVNST-SHFW-------------LEPLTDTKVAMLDDATTTC-------- 116 (212)
T ss_dssp SEEEEESCGGGCHHHHHHHHHHHHTCEECCCCCSS-SCGG-------------GGGGTTCSSEEEEEECHHH--------
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCCeeeEEecc-chhh-------------hcccCCCCEEEEECCCchh--------
Confidence 46999999999999999999999865443221111 0000 0011124599999998521
Q ss_pred CHHHHHHHHHHHHHc----CCCC------CCEEEEEeeCCC---CCCCHHHHccccceeecCCCC
Q 010366 349 SEAQRSALNALLFRT----GDQS------KDIVLALATNRP---GDLDSAVADRIDEVLEFPLPG 400 (512)
Q Consensus 349 ~~~~~~~l~~ll~~~----~~~~------~~viiI~ttN~~---~~l~~al~~R~~~~i~~~~p~ 400 (512)
.......+..++... +... ....+|.|||.. +..-+.+.+|+ ..+.|+.|-
T Consensus 117 ~~~~d~~lrn~ldG~~~~iD~Khr~~~~~~~~PlIITtN~~~~~~~~~~~L~SRi-~~f~F~~~~ 180 (212)
T 1tue_A 117 WTYFDTYMRNALDGNPISIDRKHKPLIQLKCPPILLTTNIHPAKDNRWPYLESRI-TVFEFPNAF 180 (212)
T ss_dssp HHHHHHHCHHHHHTCCEEEC----CCEEECCCCEEEEESSCTTSSSSCHHHHTSC-EEEECCSCC
T ss_pred HHHHHHHHHHHhCCCcccHHHhhcCccccCCCCEEEecCCCcccccchhhhhhhE-EEEEcCCCC
Confidence 011222333444331 1111 124688899983 33346788999 788887553
No 96
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.84 E-value=6.9e-08 Score=119.84 Aligned_cols=137 Identities=17% Similarity=0.244 Sum_probs=91.9
Q ss_pred ceEEecCCCCchHHHHHHH-HHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHH----h------c-----CCCcEEEE
Q 010366 270 NMLFYGPPGTGKTMAAREL-ARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAK----K------S-----KRGLLLFI 333 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~al-A~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~----~------~-----~~~~vl~l 333 (512)
++||+||||||||+++..+ +...+.+++.++++.... ...+...++... . . ++..|+||
T Consensus 1306 pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tt-----a~~l~~~~e~~~e~~~~~~~G~~~~p~~~Gk~~VlFi 1380 (3245)
T 3vkg_A 1306 PLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATT-----PELLLKTFDHHCEYKRTPSGETVLRPTQLGKWLVVFC 1380 (3245)
T ss_dssp CCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCC-----HHHHHHHHHHHEEEEECTTSCEEEEESSTTCEEEEEE
T ss_pred cEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCC-----HHHHHHHHhhcceEEeccCCCcccCCCcCCceEEEEe
Confidence 4999999999999877654 443456677788766432 223333333210 0 0 11259999
Q ss_pred ccchhhhhhcccCCCCHHHHHHHHHHHHHcC--C-------CCCCEEEEEeeCCCC-----CCCHHHHccccceeecCCC
Q 010366 334 DEADAFLCERNKTYMSEAQRSALNALLFRTG--D-------QSKDIVLALATNRPG-----DLDSAVADRIDEVLEFPLP 399 (512)
Q Consensus 334 DEid~l~~~~~~~~~~~~~~~~l~~ll~~~~--~-------~~~~viiI~ttN~~~-----~l~~al~~R~~~~i~~~~p 399 (512)
||++.-.. +..+ .....+.|..++..-+ + .-.++.+|+|+|.|. .++++|+||| .++.++.|
T Consensus 1381 DDiNmp~~--D~yG-tQ~~ielLrqlld~~g~yd~~~~~~~~i~d~~~vaamnPp~~gGr~~l~~Rf~r~F-~vi~i~~p 1456 (3245)
T 3vkg_A 1381 DEINLPST--DKYG-TQRVITFIRQMVEKGGFWRTSDHTWIKLDKIQFVGACNPPTDAGRVQLTHRFLRHA-PILLVDFP 1456 (3245)
T ss_dssp TTTTCCCC--CTTS-CCHHHHHHHHHHHHSEEEETTTTEEEEESSEEEEEEECCTTSTTCCCCCHHHHTTC-CEEECCCC
T ss_pred cccCCCCc--cccc-cccHHHHHHHHHHcCCeEECCCCeEEEecCeEEEEEcCCCCCCCCccCCHHHHhhc-eEEEeCCC
Confidence 99986322 2111 2245567777776432 1 113688999999873 6899999999 88999999
Q ss_pred CHHHHHHHHHHHHHHH
Q 010366 400 GQEERFKLLKLYLDKY 415 (512)
Q Consensus 400 ~~~er~~Il~~~l~~~ 415 (512)
+.++...|+..++...
T Consensus 1457 s~esL~~If~til~~~ 1472 (3245)
T 3vkg_A 1457 STSSLTQIYGTFNRAL 1472 (3245)
T ss_dssp CHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHH
Confidence 9999999998887654
No 97
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=98.78 E-value=1.3e-09 Score=108.95 Aligned_cols=98 Identities=15% Similarity=0.199 Sum_probs=56.0
Q ss_pred CCCCCCccccChHH-HHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC----CCeEEEeCCCCCC--
Q 010366 234 NGNGFGDVILHPSL-QKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG----LDYALMTGGDVAP-- 306 (512)
Q Consensus 234 ~~~~~~~vvg~~~~-~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~----~~~~~v~~~~~~~-- 306 (512)
...+|+++++.+.. ...+..+........ ..+..+++|+||||||||++|.++|..+. .++++++++++..
T Consensus 119 ~~~tfd~f~~~~~~~~~~~~~~~~~i~~~~--~~~~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~~~~l~~~l 196 (308)
T 2qgz_A 119 RHIHLSDIDVNNASRMEAFSAILDFVEQYP--SAEQKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLHFPSFAIDV 196 (308)
T ss_dssp GSCCGGGSCCCSHHHHHHHHHHHHHHHHCS--CSSCCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEEHHHHHHHH
T ss_pred HhCCHhhCcCCChHHHHHHHHHHHHHHhcc--ccCCceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEEHHHHHHHH
Confidence 34679999986532 223332333332221 11246899999999999999999998654 6777776543211
Q ss_pred ---CchhHHHHHHHHHHHHHhcCCCcEEEEccchhh
Q 010366 307 ---LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAF 339 (512)
Q Consensus 307 ---~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l 339 (512)
.... .+...+.... ...+|||||++..
T Consensus 197 ~~~~~~~---~~~~~~~~~~---~~~lLiiDdig~~ 226 (308)
T 2qgz_A 197 KNAISNG---SVKEEIDAVK---NVPVLILDDIGAE 226 (308)
T ss_dssp HCCCC-------CCTTHHHH---TSSEEEEETCCC-
T ss_pred HHHhccc---hHHHHHHHhc---CCCEEEEcCCCCC
Confidence 0000 0111122222 2569999999764
No 98
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=98.69 E-value=1.4e-08 Score=94.75 Aligned_cols=126 Identities=17% Similarity=0.238 Sum_probs=77.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH--------hC-CCeEEEeCCCCCC-Cc----------hhHHH--HHHHHHHHH-HhcC
Q 010366 270 NMLFYGPPGTGKTMAARELARK--------SG-LDYALMTGGDVAP-LG----------PQAVT--KIHQLFDWA-KKSK 326 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~--------l~-~~~~~v~~~~~~~-~~----------~~~~~--~l~~lf~~a-~~~~ 326 (512)
..|++|+||||||++|..++.. .| .+++..++.++.. .. ....+ ....++.++ ....
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~~~~~~~~~~g~r~v~~~~~~gL~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMANDEMFKPDENGIRRKVFTNIKGLKIPHTYIETDAKKLPKSTDEQLSAHDMYEWIKKPEN 86 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHCGGGSCCTTSCCCCEEECCTTBCSCCEEEECCTTTCSSCCSSCEEGGGHHHHTTSGGG
T ss_pred EEEEEeCCCCCHHHHHHHHHHHHHhhcccccCceEEEEecCCCccccccccchhhhhccccCcccccHHHHHHHhhcccc
Confidence 5899999999999998886443 34 5665566544321 10 00000 012233332 1123
Q ss_pred CCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcC-CCCCCEEEEEeeCCCCCCCHHHHccccceeecCCCCHH
Q 010366 327 RGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTG-DQSKDIVLALATNRPGDLDSAVADRIDEVLEFPLPGQE 402 (512)
Q Consensus 327 ~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~-~~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~ 402 (512)
+++||+|||++.+.+.+..... . . .++..+. ......-||++|+.+..++.++.+|+...+++++|...
T Consensus 87 ~~~vliIDEAq~l~~~~~~~~e--~-~----rll~~l~~~r~~~~~iil~tq~~~~l~~~lr~ri~~~~~l~~~~~~ 156 (199)
T 2r2a_A 87 IGSIVIVDEAQDVWPARSAGSK--I-P----ENVQWLNTHRHQGIDIFVLTQGPKLLDQNLRTLVRKHYHIASNKMG 156 (199)
T ss_dssp TTCEEEETTGGGTSBCCCTTCC--C-C----HHHHGGGGTTTTTCEEEEEESCGGGBCHHHHTTEEEEEEEEECSSC
T ss_pred CceEEEEEChhhhccCccccch--h-H----HHHHHHHhcCcCCeEEEEECCCHHHHhHHHHHHhheEEEEcCcccC
Confidence 4789999999998765422110 1 1 1333332 23445677888888999999999999999999876543
No 99
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=98.67 E-value=3.9e-08 Score=97.66 Aligned_cols=112 Identities=15% Similarity=0.149 Sum_probs=63.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC--CCCCC-CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhccc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG--GDVAP-LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNK 345 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~--~~~~~-~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~ 345 (512)
..++|+||||||||++|..+|...+.+..+++. .+... +.......+..+.+.+... . +||||+++.+......
T Consensus 124 sviLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~~~eE~v~~~~~~le~~l~~i~~~l~~~--~-LLVIDsI~aL~~~~~~ 200 (331)
T 2vhj_A 124 GMVIVTGKGNSGKTPLVHALGEALGGKDKYATVRFGEPLSGYNTDFNVFVDDIARAMLQH--R-VIVIDSLKNVIGAAGG 200 (331)
T ss_dssp EEEEEECSCSSSHHHHHHHHHHHHHTTSCCEEEEBSCSSTTCBCCHHHHHHHHHHHHHHC--S-EEEEECCTTTC-----
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEecchhhhhhhhcCHHHHHHHHHHHHhhC--C-EEEEeccccccccccc
Confidence 357999999999999999999876555333333 22211 2223344445555555543 2 9999999998554332
Q ss_pred CC----CCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHH
Q 010366 346 TY----MSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAV 386 (512)
Q Consensus 346 ~~----~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al 386 (512)
.. .....+..+..|..... ..++.+|+++| +...++++
T Consensus 201 ~s~~G~v~~~lrqlL~~L~~~~k--~~gvtVIlttn-p~s~deal 242 (331)
T 2vhj_A 201 NTTSGGISRGAFDLLSDIGAMAA--SRGCVVIASLN-PTSNDDKI 242 (331)
T ss_dssp ------CCHHHHHHHHHHHHHHH--HHTCEEEEECC-CSSCSSSH
T ss_pred ccccchHHHHHHHHHHHHHHHHh--hCCCEEEEEeC-CcccchhH
Confidence 11 12234455555544332 23567788888 44455443
No 100
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=98.65 E-value=1.7e-07 Score=90.74 Aligned_cols=117 Identities=16% Similarity=0.222 Sum_probs=70.7
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTY 347 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~ 347 (512)
.++++||||||||||++|.+||+.++. +-.++.+.-.. .+. ......|++.||....-
T Consensus 104 ~n~~~l~GppgtGKt~~a~ala~~~~l-~G~vn~~~~~f-----------~l~---~~~~k~i~l~Ee~~~~~------- 161 (267)
T 1u0j_A 104 RNTIWLFGPATTGKTNIAEAIAHTVPF-YGCVNWTNENF-----------PFN---DCVDKMVIWWEEGKMTA------- 161 (267)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHSSC-EEECCTTCSSC-----------TTG---GGSSCSEEEECSCCEET-------
T ss_pred CcEEEEECCCCCCHHHHHHHHHhhhcc-cceeecccccc-----------ccc---cccccEEEEeccccchh-------
Confidence 357999999999999999999998654 22333221100 011 11223466667665431
Q ss_pred CCHHHHHHHHHHHHH----cC-C-----CCCCEEEEEeeCC-C----------CCCCHHHHccccceeecC--------C
Q 010366 348 MSEAQRSALNALLFR----TG-D-----QSKDIVLALATNR-P----------GDLDSAVADRIDEVLEFP--------L 398 (512)
Q Consensus 348 ~~~~~~~~l~~ll~~----~~-~-----~~~~viiI~ttN~-~----------~~l~~al~~R~~~~i~~~--------~ 398 (512)
.....+..++.. ++ . .-....+|+|||. + +...++|.+|+ .++.|+ +
T Consensus 162 ---d~~~~lr~i~~G~~~~id~K~k~~~~v~~tPvIitsN~~i~~~~~g~~~s~~~~~~L~sR~-~~f~F~~~~p~~~~~ 237 (267)
T 1u0j_A 162 ---KVVESAKAILGGSKVRVDQKCKSSAQIDPTPVIVTSNTNMCAVIDGNSTTFEHQQPLQDRM-FKFELTRRLDHDFGK 237 (267)
T ss_dssp ---TTHHHHHHHHTTCCEEC------CCEECCCCEEEEESSCTTCEEETTEEECTTHHHHHTTE-EEEECCSCCCTTSCC
T ss_pred ---HHHHHHHHHhCCCcEEEecCcCCcccccCCCEEEEecCCcccccccCccchhhhHHHhhhE-EEEECCCcCCcccCC
Confidence 111233444431 11 1 1134678888887 1 24568899999 888887 7
Q ss_pred CCHHHHHHHHHH
Q 010366 399 PGQEERFKLLKL 410 (512)
Q Consensus 399 p~~~er~~Il~~ 410 (512)
.+.++....+..
T Consensus 238 lt~~~~~~f~~w 249 (267)
T 1u0j_A 238 VTKQEVKDFFRW 249 (267)
T ss_dssp CCHHHHHHHHHH
T ss_pred CCHHHHHHHHHH
Confidence 788888888873
No 101
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=98.65 E-value=9.1e-08 Score=113.42 Aligned_cols=144 Identities=11% Similarity=0.103 Sum_probs=89.1
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHhh-c-------------hhh-----------------cCCCCcc--eEEecCCCC
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGATA-N-------------TKA-----------------HNAPFRN--MLFYGPPGT 279 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~~-~-------------~~~-----------------~~~p~~~--vLL~GppGt 279 (512)
.+..+|.++-|.++++..+...+...- . ... .|.+|++ +|+||||||
T Consensus 1014 ~~~~~~~~~~~~~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tG~~glD~~lg~GG~p~g~~~l~~G~~g~ 1093 (1706)
T 3cmw_A 1014 ASGSSTGSMSAIDENKQKALAAALGQIEKQFGKGSIMRLGEDRSMDVETISTGSLSLDIALGAGGLPMGRIVEIYGPESS 1093 (1706)
T ss_dssp ----------CTTHHHHHHHHHHHHHHHHHHCGGGSEEGGGCGGGSCCEECCSCHHHHHHTSSSSEETTSEEEEECSTTS
T ss_pred cCCceeeecCCccHHHHHHHHHHHHHHhhccCcccchhchhhhhccccccccCchhHHHHhccCCCCCCCEEEEEcCCCC
Confidence 445779999999988877754333222 1 111 1334455 999999999
Q ss_pred chHHHHHHHHHHh---CCCeEEEeCCCCCC-------------Cchh----HHHHHHHHHHHHHhcCCCcEEEEccchhh
Q 010366 280 GKTMAARELARKS---GLDYALMTGGDVAP-------------LGPQ----AVTKIHQLFDWAKKSKRGLLLFIDEADAF 339 (512)
Q Consensus 280 GKT~lA~alA~~l---~~~~~~v~~~~~~~-------------~~~~----~~~~l~~lf~~a~~~~~~~vl~lDEid~l 339 (512)
|||++|++++.+. +.|.+.++.....+ +..+ ++..+..+|..|+... +++||+|+++.|
T Consensus 1094 GKT~la~~~~~~~~~~g~~~~fi~~~~~~~~~~~~~~G~d~~~~~~~~~~~~e~~l~~~~~~ar~~~-~~~i~~d~~~al 1172 (1706)
T 3cmw_A 1094 GKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA-VDVIVVDSVAAL 1172 (1706)
T ss_dssp SHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTC-CSEEEESCGGGC
T ss_pred ChHHHHHHHHHHhhhcCCceeEEEcccchHHHHHHHhCCCHHHHhhccccchHHHHHHHHHHHHhcC-CeEEEeCchHhc
Confidence 9999999998765 56666676655331 2233 6778888887777655 899999999999
Q ss_pred hhhccc---CC--CCHHHHHHHHHHHHHcCC--CCCCEEEEEeeCC
Q 010366 340 LCERNK---TY--MSEAQRSALNALLFRTGD--QSKDIVLALATNR 378 (512)
Q Consensus 340 ~~~~~~---~~--~~~~~~~~l~~ll~~~~~--~~~~viiI~ttN~ 378 (512)
++.+.. .. .......+++++|..++. ...+|+|| +||.
T Consensus 1173 ~~~~~~~g~~~~~~~~~~~r~~~q~l~~~~~~~~~~~v~v~-~~n~ 1217 (1706)
T 3cmw_A 1173 TPKAEIEGEIGDSHMGLAARMMSQAMRKLAGNLKQSNTLLI-FINQ 1217 (1706)
T ss_dssp CCHHHHHSCTTCCCTTHHHHHHHHHHHHHHHHHHHTTCEEE-EEEC
T ss_pred CcccccccccccccccHHHHHHHHHHHHHHhhhccCCeEEE-Eecc
Confidence 988431 11 123445578888887742 33566666 6665
No 102
>3kw6_A 26S protease regulatory subunit 8; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; 2.10A {Homo sapiens}
Probab=98.63 E-value=5.5e-08 Score=76.41 Aligned_cols=75 Identities=20% Similarity=0.200 Sum_probs=61.0
Q ss_pred CCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhC
Q 010366 397 PLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYG 476 (512)
Q Consensus 397 ~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~ 476 (512)
|+|+.++|.+||+.++..... -++.++..||..|+||||+||..+|..+...+..
T Consensus 1 plPd~~~R~~Il~~~l~~~~~-------------------------~~~~dl~~la~~t~G~SGADi~~l~~eA~~~a~~ 55 (78)
T 3kw6_A 1 PPPNEEARLDILKIHSRKMNL-------------------------TRGINLRKIAELMPGASGAEVKGVCTEAGMYALR 55 (78)
T ss_dssp CCCCHHHHHHHHHHHHTTSEE-------------------------CTTCCHHHHHHTCTTCCHHHHHHHHHHHHHHHHH
T ss_pred CcCCHHHHHHHHHHHhcCCCC-------------------------CCccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHH
Confidence 789999999999999876421 1334599999999999999999999666655555
Q ss_pred CCCCccCHHHHHHHHHHHHH
Q 010366 477 SENCVLDPSLFREVVDYKVA 496 (512)
Q Consensus 477 ~~~~~it~e~~~~al~~~~~ 496 (512)
.+...||.+||..|++....
T Consensus 56 ~~~~~i~~~d~~~Al~~v~~ 75 (78)
T 3kw6_A 56 ERRVHVTQEDFEMAVAKVMQ 75 (78)
T ss_dssp TTCSEECHHHHHHHHHHHHC
T ss_pred hCCCCCCHHHHHHHHHHHHh
Confidence 56689999999999987653
No 103
>2krk_A 26S protease regulatory subunit 8; structural genomics, northeast structural genomics consortium (NESG), target HR3102A, PSI-2; NMR {Homo sapiens}
Probab=98.47 E-value=1.6e-07 Score=75.11 Aligned_cols=76 Identities=18% Similarity=0.170 Sum_probs=60.8
Q ss_pred ecCCCCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHH
Q 010366 395 EFPLPGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAV 474 (512)
Q Consensus 395 ~~~~p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~ 474 (512)
.-.+|+.++|.+||+.++..... -++.+++.||..|+||||+||..+|..+...+
T Consensus 7 ~~~~Pd~~~R~~IL~~~l~~~~l-------------------------~~dvdl~~LA~~T~G~SGADL~~l~~eAa~~a 61 (86)
T 2krk_A 7 HHSHPNEEARLDILKIHSRKMNL-------------------------TRGINLRKIAELMPGASGAEVKGVCTEAGMYA 61 (86)
T ss_dssp CCCCCCHHHHHHHHHHHTTTSEE-------------------------CTTCCCHHHHHTCSSCCHHHHHHHHHHHHHHH
T ss_pred CCCCcCHHHHHHHHHHHHcCCCC-------------------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHH
Confidence 45789999999999999876421 12345889999999999999999997665555
Q ss_pred hCCCCCccCHHHHHHHHHHHH
Q 010366 475 YGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 475 ~~~~~~~it~e~~~~al~~~~ 495 (512)
.......|+.+||..|++...
T Consensus 62 lr~~~~~I~~~df~~Al~~v~ 82 (86)
T 2krk_A 62 LRERRVHVTQEDFEMAVAKVM 82 (86)
T ss_dssp HHTTCSEECHHHHHHHHHHHH
T ss_pred HHHcCCCCCHHHHHHHHHHHc
Confidence 555558899999999998764
No 104
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=98.42 E-value=3.2e-06 Score=105.26 Aligned_cols=147 Identities=18% Similarity=0.216 Sum_probs=101.7
Q ss_pred CccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHH
Q 010366 239 GDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQL 318 (512)
Q Consensus 239 ~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~l 318 (512)
..+|-.|-...-...+..+..... +..+.||+|||||.+++.+|+.+|.+++.++|++-..+ ..+..+
T Consensus 582 ~rLViTPLTdrcy~tl~~Al~~~~-------gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~d~-----~~~g~i 649 (3245)
T 3vkg_A 582 ERLVQTPLTDRCYLTLTQALESRM-------GGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGFDL-----QAMSRI 649 (3245)
T ss_dssp CCCCCCHHHHHHHHHHHHHHHTTC-------EEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCCCH-----HHHHHH
T ss_pred CCCcCChHHHHHHHHHHHHHHhcC-------CCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCCCH-----HHHHHH
Confidence 355666655555555544433221 46789999999999999999999999999999875543 234445
Q ss_pred HHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHH-----------c----C---CCCCCEEEEEeeCC--
Q 010366 319 FDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFR-----------T----G---DQSKDIVLALATNR-- 378 (512)
Q Consensus 319 f~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~-----------~----~---~~~~~viiI~ttN~-- 378 (512)
|.-+... ++..+||||+.+ ....-.++...+.. + + ....++.|++|.|.
T Consensus 650 ~~G~~~~--GaW~cfDEfNrl---------~~~vLSvv~~qi~~I~~a~~~~~~~~~~~~G~~i~l~~~~~vfiTmNpgY 718 (3245)
T 3vkg_A 650 FVGLCQC--GAWGCFDEFNRL---------EERILSAVSQQIQTIQVALKENSKEVELLGGKNISLHQDMGIFVTMNPGY 718 (3245)
T ss_dssp HHHHHHH--TCEEEEETTTSS---------CHHHHHHHHHHHHHHHHHHHHTCSEECCC---CEECCTTCEEEECBCCCG
T ss_pred HhhHhhc--CcEEEehhhhcC---------CHHHHHHHHHHHHHHHHHHHcCCCeEEecCCCEEeecCCeEEEEEeCCCc
Confidence 5555543 789999999996 22333333332221 0 1 02335788889985
Q ss_pred --CCCCCHHHHccccceeecCCCCHHHHHHHHH
Q 010366 379 --PGDLDSAVADRIDEVLEFPLPGQEERFKLLK 409 (512)
Q Consensus 379 --~~~l~~al~~R~~~~i~~~~p~~~er~~Il~ 409 (512)
...+++.+.+|| ..|.++.|+.+...+|+-
T Consensus 719 ~gr~eLP~nLk~lF-r~v~m~~Pd~~~i~ei~L 750 (3245)
T 3vkg_A 719 AGRSNLPDNLKKLF-RSMAMIKPDREMIAQVML 750 (3245)
T ss_dssp GGCCCSCHHHHTTE-EEEECCSCCHHHHHHHHH
T ss_pred cCcccChHHHHhhc-EEEEEeCCCHHHHHHHHH
Confidence 468999999999 789999999998888764
No 105
>3vlf_B 26S protease regulatory subunit 7 homolog; heat repeat, chaperone, chaperone-protein binding complex; HET: DNA; 3.80A {Saccharomyces cerevisiae} PDB: 4a3v_B*
Probab=98.26 E-value=4.1e-07 Score=73.13 Aligned_cols=79 Identities=10% Similarity=0.030 Sum_probs=56.4
Q ss_pred CHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCC
Q 010366 400 GQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSEN 479 (512)
Q Consensus 400 ~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~ 479 (512)
+.++|.+||+.++..... -++.+++.||..|+||||+||..+|..+...+.....
T Consensus 2 d~~~R~~Il~~~~~~~~~-------------------------~~dvdl~~lA~~t~G~SGADl~~l~~eAa~~a~r~~~ 56 (88)
T 3vlf_B 2 DLEGRANIFRIHSKSMSV-------------------------ERGIRWELISRLCPNSTGAELRSVCTEAGMFAIRARR 56 (88)
T ss_dssp CSSHHHHHHHHHHTTSCB-------------------------CSCCCHHHHHHTCSSCCHHHHHHHHHHHHHHHHHHSC
T ss_pred CHHHHHHHHHHHHCCCCC-------------------------CCccCHHHHHHHcCCCcHHHHHHHHHHHHHHHHHhcc
Confidence 557899999988866421 1334589999999999999999999655444444445
Q ss_pred CccCHHHHHHHHHHHHHHHHHHHH
Q 010366 480 CVLDPSLFREVVDYKVAEHQQRRK 503 (512)
Q Consensus 480 ~~it~e~~~~al~~~~~~~~~~~~ 503 (512)
..|+.+||..|++........+..
T Consensus 57 ~~i~~~df~~Al~~v~~~~~~~~~ 80 (88)
T 3vlf_B 57 KVATEKDFLKAVDKVISGYKKFSS 80 (88)
T ss_dssp SSBCHHHHHHHHHHHTC-------
T ss_pred ccCCHHHHHHHHHHHhcCcccccc
Confidence 789999999999998877666554
No 106
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=98.22 E-value=3e-06 Score=77.40 Aligned_cols=26 Identities=27% Similarity=0.617 Sum_probs=22.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
.+.|+||+|+||||+++.++..++..
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l~i~ 27 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERLGKR 27 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHGGG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 48899999999999999999887643
No 107
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=98.16 E-value=4.5e-05 Score=82.50 Aligned_cols=146 Identities=17% Similarity=0.098 Sum_probs=81.1
Q ss_pred CCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHH-------hCCCeEEEeCCCCCC---
Q 010366 237 GFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK-------SGLDYALMTGGDVAP--- 306 (512)
Q Consensus 237 ~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~-------l~~~~~~v~~~~~~~--- 306 (512)
....+||.+.....+...+... ....+.++|+||+|+|||++|..+++. +...++.++.+....
T Consensus 122 ~~~~~vGR~~~l~~L~~~L~~~------~~~~~~v~I~G~~GiGKTtLa~~~~~~~~~~~~~f~~~v~wv~~~~~~~~~~ 195 (591)
T 1z6t_A 122 RPVVFVTRKKLVNAIQQKLSKL------KGEPGWVTIHGMAGCGKSVLAAEAVRDHSLLEGCFPGGVHWVSVGKQDKSGL 195 (591)
T ss_dssp CCSSCCCCHHHHHHHHHHHTTS------TTSCEEEEEECCTTSSHHHHHHHHHCCHHHHHHHCTTCEEEEEEESCCHHHH
T ss_pred CCCeecccHHHHHHHHHHHhcc------cCCCceEEEEcCCCCCHHHHHHHHHhchhHHHhhCCCceEEEECCCCchHHH
Confidence 3578999999998887665321 122357999999999999999998642 222344444322110
Q ss_pred -------------------C-chhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCC
Q 010366 307 -------------------L-GPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQ 366 (512)
Q Consensus 307 -------------------~-~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~ 366 (512)
. ..........+........++.+|+|||++.. . .+..+
T Consensus 196 ~~~l~~l~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LLVLDdv~~~-----------~-------~l~~l--- 254 (591)
T 1z6t_A 196 LMKLQNLCTRLDQDESFSQRLPLNIEEAKDRLRILMLRKHPRSLLILDDVWDS-----------W-------VLKAF--- 254 (591)
T ss_dssp HHHHHHHHHHHCSSCCSCSSCCCSHHHHHHHHHHHHHHTCTTCEEEEEEECCH-----------H-------HHHTT---
T ss_pred HHHHHHHHHHhccccccccCCCCCHHHHHHHHHHHHccCCCCeEEEEeCCCCH-----------H-------HHHHh---
Confidence 0 00011111222222222224789999999862 1 12222
Q ss_pred CCCEEEEEeeCCCCCCCHHHHccccceeec---CCCCHHHHHHHHHHHHH
Q 010366 367 SKDIVLALATNRPGDLDSAVADRIDEVLEF---PLPGQEERFKLLKLYLD 413 (512)
Q Consensus 367 ~~~viiI~ttN~~~~l~~al~~R~~~~i~~---~~p~~~er~~Il~~~l~ 413 (512)
..++.||.||........ . . ...+.+ ++++.++-.+++...+.
T Consensus 255 ~~~~~ilvTsR~~~~~~~-~-~--~~~~~v~~l~~L~~~ea~~L~~~~~~ 300 (591)
T 1z6t_A 255 DSQCQILLTTRDKSVTDS-V-M--GPKYVVPVESSLGKEKGLEILSLFVN 300 (591)
T ss_dssp CSSCEEEEEESCGGGGTT-C-C--SCEEEEECCSSCCHHHHHHHHHHHHT
T ss_pred cCCCeEEEECCCcHHHHh-c-C--CCceEeecCCCCCHHHHHHHHHHHhC
Confidence 345677777765331110 0 0 122333 47899998888887653
No 108
>3aji_B S6C, proteasome (prosome, macropain) 26S subunit, ATPA; gankyrin, S6 ATPase, P-benzoyl-L-phenylalanine, PBPA, amber suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dwz_B* 2dvw_B*
Probab=98.09 E-value=2.3e-06 Score=67.81 Aligned_cols=76 Identities=9% Similarity=0.105 Sum_probs=58.8
Q ss_pred CCHHHHHHHHHHHHHHHhhhhCCCCCcchhhhhhhhhhhhhhcCCCHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCC
Q 010366 399 PGQEERFKLLKLYLDKYIAQAGSRKPGLVHRLFKSEQQKIEIKGLTDDILMEAAAKTEGFSGREIAKLMASVQAAVYGSE 478 (512)
Q Consensus 399 p~~~er~~Il~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~ 478 (512)
.+.++|.+||+.++..... -++.++..||..|+||||+||..+|..+...+....
T Consensus 1 ~d~~~R~~Il~~~l~~~~~-------------------------~~~vdl~~la~~t~G~SGADi~~l~~eA~~~a~~~~ 55 (83)
T 3aji_B 1 MDRRQKRLIFSTITSKMNL-------------------------SEEVDLEDYVARPDKISGADINSICQESGMLAVREN 55 (83)
T ss_dssp CCHHHHHHHHHHHHTTSCB-------------------------CTTCCTHHHHTSSCCCCHHHHHHHHHHHHHGGGTSC
T ss_pred CCHHHHHHHHHHHhCCCCC-------------------------CcccCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhc
Confidence 3678999999998876421 123458999999999999999999977766666666
Q ss_pred CCccCHHHHHHHHHHHHHHHH
Q 010366 479 NCVLDPSLFREVVDYKVAEHQ 499 (512)
Q Consensus 479 ~~~it~e~~~~al~~~~~~~~ 499 (512)
...||.+||..|++...+...
T Consensus 56 ~~~i~~~df~~Al~~~~ps~~ 76 (83)
T 3aji_B 56 RYIVLAKDFEKAYKTVIKKDE 76 (83)
T ss_dssp CSSBCHHHHHHHHHHHCC---
T ss_pred cCCcCHHHHHHHHHHHccCch
Confidence 688999999999998766544
No 109
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=97.95 E-value=8.2e-06 Score=83.33 Aligned_cols=112 Identities=14% Similarity=0.053 Sum_probs=62.2
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCCCCCchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhh-hcc
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDVAPLGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLC-ERN 344 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~-~~~ 344 (512)
.+...++|+|||||||||+++.++..++..++.+.... .. ..-.+.. .....++++||++.+.. .+.
T Consensus 167 ~~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~~~~~~---~~--~~~~lg~-------~~q~~~~l~dd~~~~~~~~r~ 234 (377)
T 1svm_A 167 PKKRYWLFKGPIDSGKTTLAAALLELCGGKALNVNLPL---DR--LNFELGV-------AIDQFLVVFEDVKGTGGESRD 234 (377)
T ss_dssp TTCCEEEEECSTTSSHHHHHHHHHHHHCCEEECCSSCT---TT--HHHHHGG-------GTTCSCEEETTCCCSTTTTTT
T ss_pred CCCCEEEEECCCCCCHHHHHHHHHhhcCCcEEEEeccc---hh--HHHHHHH-------hcchhHHHHHHHHHHHHHHhh
Confidence 34457999999999999999999998877655433221 11 1111111 12245789999998764 221
Q ss_pred cCCCCHH-HHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHc--cccceeec
Q 010366 345 KTYMSEA-QRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVAD--RIDEVLEF 396 (512)
Q Consensus 345 ~~~~~~~-~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~--R~~~~i~~ 396 (512)
....... ....+...+ .+.+.+++++|+++.+ +++++ |++..+..
T Consensus 235 l~~~~~~~~~~~l~~~l------dG~v~v~~~tn~~~~l-~alf~pg~ld~~~~~ 282 (377)
T 1svm_A 235 LPSGQGINNLDNLRDYL------DGSVKVNLEKKHLNKR-TQIFPPGIVTMNEYS 282 (377)
T ss_dssp CCCCSHHHHHHTTHHHH------HCSSCEEECCSSSCCE-EECCCCEEEEECSCC
T ss_pred ccccCcchHHHHHHHHh------cCCCeEeeccCchhhH-HHhhcCcccChhHHh
Confidence 1110111 112222222 1235677888888877 45544 44443333
No 110
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.90 E-value=2.2e-05 Score=94.37 Aligned_cols=76 Identities=17% Similarity=0.186 Sum_probs=51.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC------C-----------chhHHHHHHHHHHHHHhcC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------L-----------GPQAVTKIHQLFDWAKKSK 326 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~------~-----------~~~~~~~l~~lf~~a~~~~ 326 (512)
+..+++|+||||||||+||.+++.+. |....+++...... . ....+..+..++..++. .
T Consensus 1426 ~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~~~~l~a~~~G~dl~~l~v~~~~~~E~~l~~~~~lvr~-~ 1504 (2050)
T 3cmu_A 1426 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARS-G 1504 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHH-T
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccccCHHHHHHcCCCchhceeecCChHHHHHHHHHHHHhc-C
Confidence 45689999999999999999997664 55666666554321 0 11223444444444544 4
Q ss_pred CCcEEEEccchhhhhhc
Q 010366 327 RGLLLFIDEADAFLCER 343 (512)
Q Consensus 327 ~~~vl~lDEid~l~~~~ 343 (512)
.+++||||+++.+.+..
T Consensus 1505 ~~~lVVIDsi~al~p~~ 1521 (2050)
T 3cmu_A 1505 AVDVIVVDSVAALTPKA 1521 (2050)
T ss_dssp CCSEEEESCGGGCCCHH
T ss_pred CCCEEEEcChhHhcccc
Confidence 58999999999887643
No 111
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.82 E-value=4.7e-06 Score=76.49 Aligned_cols=30 Identities=20% Similarity=0.175 Sum_probs=22.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v 299 (512)
-++++||||+|||+++..++..+ +..++.+
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~ 37 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVF 37 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEE
Confidence 48899999999999986666543 4444444
No 112
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=97.81 E-value=7.8e-05 Score=78.29 Aligned_cols=53 Identities=17% Similarity=0.256 Sum_probs=35.6
Q ss_pred ccCCCCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh
Q 010366 232 SKNGNGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 232 ~~~~~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
++.+.+|+++ .++....+..+...+... . +.++|.||||||||+++.+++..+
T Consensus 17 ~~~p~~~~~L--n~~Q~~av~~~~~~i~~~----~--~~~li~G~aGTGKT~ll~~~~~~l 69 (459)
T 3upu_A 17 RGSHMTFDDL--TEGQKNAFNIVMKAIKEK----K--HHVTINGPAGTGATTLTKFIIEAL 69 (459)
T ss_dssp ----CCSSCC--CHHHHHHHHHHHHHHHSS----S--CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred ccCCCccccC--CHHHHHHHHHHHHHHhcC----C--CEEEEEeCCCCCHHHHHHHHHHHH
Confidence 5677778887 456666665555443321 1 269999999999999999998776
No 113
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=97.74 E-value=0.00061 Score=72.65 Aligned_cols=75 Identities=16% Similarity=0.297 Sum_probs=56.9
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC--CCCHHHHccccceeecCCCCHHHHH
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG--DLDSAVADRIDEVLEFPLPGQEERF 405 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~--~l~~al~~R~~~~i~~~~p~~~er~ 405 (512)
+.+|+|||+..|+.... ......+..+...- ...++.+|++|.+|. .++..+.+-|...|.|...+..+..
T Consensus 344 ~ivvVIDE~~~L~~~~~-----~~~~~~L~~Iar~G--Ra~GIhLIlaTQRPs~d~I~~~Iran~~~RI~lrv~s~~Dsr 416 (574)
T 2iut_A 344 TIVVVVDEFADMMMIVG-----KKVEELIARIAQKA--RAAGIHLILATQRPSVDVITGLIKANIPTRIAFQVSSKIDSR 416 (574)
T ss_dssp EEEEEESCCTTHHHHTC-----HHHHHHHHHHHHHC--TTTTEEEEEEESCCCTTTSCHHHHHTCCEEEEECCSCHHHHH
T ss_pred cEEEEEeCHHHHhhhhh-----HHHHHHHHHHHHHH--hhCCeEEEEEecCcccccccHHHHhhhccEEEEEcCCHHHHH
Confidence 46899999998865321 23344555555443 566789999999987 8999999999999999999998888
Q ss_pred HHHH
Q 010366 406 KLLK 409 (512)
Q Consensus 406 ~Il~ 409 (512)
.|+.
T Consensus 417 ~ILd 420 (574)
T 2iut_A 417 TILD 420 (574)
T ss_dssp HHHS
T ss_pred HhcC
Confidence 8874
No 114
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=97.73 E-value=0.00052 Score=80.26 Aligned_cols=148 Identities=19% Similarity=0.158 Sum_probs=84.4
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHh-------CCCeEEEeCCCCCCC-
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKS-------GLDYALMTGGDVAPL- 307 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l-------~~~~~~v~~~~~~~~- 307 (512)
.....+||.+.....|...+... ....+.+.|+|++|+|||+||+.+++.. ...++.++.+.....
T Consensus 121 ~~~~~~vgR~~~~~~l~~~l~~~------~~~~~~v~i~G~gG~GKTtLa~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~ 194 (1249)
T 3sfz_A 121 QRPVIFVTRKKLVHAIQQKLWKL------NGEPGWVTIYGMAGCGKSVLAAEAVRDHSLLEGCFSGGVHWVSIGKQDKSG 194 (1249)
T ss_dssp CCCSSCCCCHHHHHHHHHHHHTT------TTSCEEEEEECSTTSSHHHHHHHHTCCHHHHTTTSTTCEEEEECCSCCHHH
T ss_pred CCCceeccHHHHHHHHHHHHhhc------cCCCCEEEEEeCCCCCHHHHHHHHhcChhHHHhhCCCeEEEEEECCcCchH
Confidence 34577999999998887765321 1233568999999999999999987652 223345554332110
Q ss_pred ---------------------chhHHHHHHHHHHH-HHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCC
Q 010366 308 ---------------------GPQAVTKIHQLFDW-AKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGD 365 (512)
Q Consensus 308 ---------------------~~~~~~~l~~lf~~-a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~ 365 (512)
.......+...+.. .....+..+|+||+++.. . .+..
T Consensus 195 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~LlvlDd~~~~-----------~-------~~~~--- 253 (1249)
T 3sfz_A 195 LLMKLQNLCMRLDQEESFSQRLPLNIEEAKDRLRVLMLRKHPRSLLILDDVWDP-----------W-------VLKA--- 253 (1249)
T ss_dssp HHHHHHHHHHHHTTTCTTCSSCCSSHHHHHHHHHHHTSSSSCSCEEEEESCCCH-----------H-------HHTT---
T ss_pred HHHHHHHHHHHhhhhcccccCCCCCHHHHHHHHHHHHhccCCCEEEEEecCCCH-----------H-------HHHh---
Confidence 00011111111111 111123679999999863 1 1111
Q ss_pred CCCCEEEEEeeCCCCCCCHHHHccccceeecCC-CCHHHHHHHHHHHH
Q 010366 366 QSKDIVLALATNRPGDLDSAVADRIDEVLEFPL-PGQEERFKLLKLYL 412 (512)
Q Consensus 366 ~~~~viiI~ttN~~~~l~~al~~R~~~~i~~~~-p~~~er~~Il~~~l 412 (512)
...+..||.||........ . ......+.+++ ++.++-.+++..+.
T Consensus 254 ~~~~~~ilvTtR~~~~~~~-~-~~~~~~~~~~~~l~~~~a~~l~~~~~ 299 (1249)
T 3sfz_A 254 FDNQCQILLTTRDKSVTDS-V-MGPKHVVPVESGLGREKGLEILSLFV 299 (1249)
T ss_dssp TCSSCEEEEEESSTTTTTT-C-CSCBCCEECCSSCCHHHHHHHHHHHH
T ss_pred hcCCCEEEEEcCCHHHHHh-h-cCCceEEEecCCCCHHHHHHHHHHhh
Confidence 2345677788865543211 0 11235677775 89999888887665
No 115
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.73 E-value=0.0001 Score=69.60 Aligned_cols=114 Identities=15% Similarity=0.180 Sum_probs=61.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCC-------CCC-CchhH----HHHHHHHHHHHHh---cCCCcE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGD-------VAP-LGPQA----VTKIHQLFDWAKK---SKRGLL 330 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~-------~~~-~~~~~----~~~l~~lf~~a~~---~~~~~v 330 (512)
.-++++||||+|||+++..++..+ +..++.+.... +.. .+... ......++..+.. ..++.+
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d~r~~~~i~srlG~~~~~~~~~~~~~i~~~i~~~~~~~~~dv 92 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKIDTRSIRNIQSRTGTSLPSVEVESAPEILNYIMSNSFNDETKV 92 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCCGGGCSSCCCCCCCSSCCEEESSTHHHHHHHHSTTSCTTCCE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccCchHHHHHHHhcCCCccccccCCHHHHHHHHHHHhhCCCCCE
Confidence 358889999999999988887665 45566553221 111 11000 0111234444443 234789
Q ss_pred EEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeC------CCCCCCHHHHccccceeecC
Q 010366 331 LFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATN------RPGDLDSAVADRIDEVLEFP 397 (512)
Q Consensus 331 l~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN------~~~~l~~al~~R~~~~i~~~ 397 (512)
|+|||+..+ +......+..+.. . ++.||++.- .|....+.++..-|.+..+.
T Consensus 93 ViIDEaQ~l---------~~~~ve~l~~L~~----~--gi~Vil~Gl~~df~~~~F~~~~~Ll~lAD~V~el~ 150 (223)
T 2b8t_A 93 IGIDEVQFF---------DDRICEVANILAE----N--GFVVIISGLDKNFKGEPFGPIAKLFTYADKITKLT 150 (223)
T ss_dssp EEECSGGGS---------CTHHHHHHHHHHH----T--TCEEEEECCSBCTTSSBCTTHHHHHHHCSEEEECC
T ss_pred EEEecCccC---------cHHHHHHHHHHHh----C--CCeEEEEeccccccCCcCCCcHHHHHHhheEeecc
Confidence 999999875 2223333333321 1 455666543 22334456666555555544
No 116
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=97.66 E-value=0.00022 Score=67.67 Aligned_cols=33 Identities=30% Similarity=0.324 Sum_probs=24.4
Q ss_pred cceEEecCCCCchHHHHHHHH--HH--hCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELA--RK--SGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA--~~--l~~~~~~v~~ 301 (512)
..+.|+||+|+|||||++.++ .. .+...++++.
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~ 67 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEc
Confidence 358999999999999999998 32 2444444443
No 117
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=97.66 E-value=0.00034 Score=64.40 Aligned_cols=117 Identities=15% Similarity=0.165 Sum_probs=70.8
Q ss_pred cceEEecCCCCchHHHHHHHHHH---hCCCeEEEeCCCC-CC---------Cc-------------h----hHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK---SGLDYALMTGGDV-AP---------LG-------------P----QAVTKIHQL 318 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~~~~-~~---------~~-------------~----~~~~~l~~l 318 (512)
..+++|+++|.||||+|-.+|-. .|..+..+....- .. .+ . .........
T Consensus 29 g~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~v~~~~~g~gf~~~~~~~~~~~~~a~~~ 108 (196)
T 1g5t_A 29 GIIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHGVEFQVMATGFTWETQNREADTAACMAV 108 (196)
T ss_dssp CCEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGTCEEEECCTTCCCCGGGHHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCCcEEEEcccccccCCCCcHHHHHHHHHH
Confidence 46999999999999999998655 3666666632221 00 00 0 011223334
Q ss_pred HHHHHh---cCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCCCCCHHHHccccceee
Q 010366 319 FDWAKK---SKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPGDLDSAVADRIDEVLE 395 (512)
Q Consensus 319 f~~a~~---~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~~l~~al~~R~~~~i~ 395 (512)
+..+.. ...+.+|+|||+.....-.-- . ...++..+...+.+.-+|+|+|.+ +++++...|.+-+
T Consensus 109 l~~a~~~l~~~~yDlvILDEi~~al~~g~l-----~----~~ev~~~l~~Rp~~~~vIlTGr~a---p~~l~e~AD~VTe 176 (196)
T 1g5t_A 109 WQHGKRMLADPLLDMVVLDELTYMVAYDYL-----P----LEEVISALNARPGHQTVIITGRGC---HRDILDLADTVSE 176 (196)
T ss_dssp HHHHHHHTTCTTCSEEEEETHHHHHHTTSS-----C----HHHHHHHHHTSCTTCEEEEECSSC---CHHHHHHCSEEEE
T ss_pred HHHHHHHHhcCCCCEEEEeCCCccccCCCC-----C----HHHHHHHHHhCcCCCEEEEECCCC---cHHHHHhCcceee
Confidence 444443 256899999999764322111 1 122334444567778899999884 6788887776665
Q ss_pred cC
Q 010366 396 FP 397 (512)
Q Consensus 396 ~~ 397 (512)
+.
T Consensus 177 m~ 178 (196)
T 1g5t_A 177 LR 178 (196)
T ss_dssp CC
T ss_pred ec
Confidence 53
No 118
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=97.65 E-value=0.00033 Score=65.94 Aligned_cols=119 Identities=18% Similarity=0.203 Sum_probs=68.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC------------Cc-------hh--HHHHHHHHHHHHHhc
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP------------LG-------PQ--AVTKIHQLFDWAKKS 325 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~------------~~-------~~--~~~~l~~lf~~a~~~ 325 (512)
++++.|+|||||||++-.+|..+ |..++.++...-.. .. +. ....+..++ ..
T Consensus 8 ~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d~D~q~~~~~~al~~gl~~~~~~~~~~~~~~~~e~~l~~~L----~~ 83 (228)
T 2r8r_A 8 KVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGVVETHGRAETEALLNGLPQQPLLRTEYRGMTLEEMDLDALL----KA 83 (228)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEECCCTTCHHHHHHHTTSCBCCCEEEEETTEEEEECCHHHHH----HH
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEEeCCCCChhHHHHhcCccccCcceeecCCcccccccHHHHH----hc
Confidence 69999999999999999988765 66665554422100 00 00 001122221 12
Q ss_pred CCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC------------------CCCCCHHHH
Q 010366 326 KRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR------------------PGDLDSAVA 387 (512)
Q Consensus 326 ~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~------------------~~~l~~al~ 387 (512)
.|.+|++||+...-..... +....+.+..++ ...+-++.|+|. .+.++..++
T Consensus 84 -~pdlvIVDElG~~~~~~~r---~~~~~qDV~~~l------~sgidVitT~Nlqh~esl~d~v~~itg~~v~e~vpd~~~ 153 (228)
T 2r8r_A 84 -APSLVLVDELAHTNAPGSR---HTKRWQDIQELL------AAGIDVYTTVNVQHLESLNDQVRGITGVQVRETLPDWVL 153 (228)
T ss_dssp -CCSEEEESCTTCBCCTTCS---SSBHHHHHHHHH------HTTCEEEEEEEGGGBGGGHHHHHHHHSCCCCSCBCHHHH
T ss_pred -CCCEEEEeCCCCCCcccch---hHHHHHHHHHHH------cCCCCEEEEccccccccHHHHHHHHcCCCcCCcCccHHH
Confidence 3789999999864111111 111112222222 344567788773 246778888
Q ss_pred ccccceeecCCCCHH
Q 010366 388 DRIDEVLEFPLPGQE 402 (512)
Q Consensus 388 ~R~~~~i~~~~p~~~ 402 (512)
.+.+.+..++.|+.+
T Consensus 154 ~~a~~v~lvD~~p~~ 168 (228)
T 2r8r_A 154 QEAFDLVLIDLPPRE 168 (228)
T ss_dssp HTCSEEEEBCCCHHH
T ss_pred hhCCeEEEecCCHHH
Confidence 888888888888765
No 119
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=97.65 E-value=3.5e-05 Score=69.49 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=29.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
..++|+||||+||||+++.|+..++.+++.++.
T Consensus 4 ~~i~l~G~~GsGKST~a~~La~~l~~~~~~~~~ 36 (178)
T 1qhx_A 4 RMIILNGGSSAGKSGIVRCLQSVLPEPWLAFGV 36 (178)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHSSSCEEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCeEEecc
Confidence 468999999999999999999999988887653
No 120
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=97.65 E-value=0.00016 Score=67.29 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=29.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~ 303 (512)
..++|+||||+|||+++..++...+.+.++++...
T Consensus 21 ~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~ 55 (220)
T 2cvh_A 21 VLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEG 55 (220)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCC
Confidence 35899999999999999999886677788887654
No 121
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=97.64 E-value=6.9e-05 Score=73.69 Aligned_cols=57 Identities=16% Similarity=0.225 Sum_probs=39.3
Q ss_pred hHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 245 PSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 245 ~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
++....+..++............+..++|+||||+||||+++.|+..++..++.+++
T Consensus 10 ~~~~~~~~~~~~~~l~~~~~~~~~~livl~G~sGsGKSTla~~L~~~~~~~~~~Is~ 66 (287)
T 1gvn_B 10 KQFENRLNDNLEELIQGKKAVESPTAFLLGGQPGSGKTSLRSAIFEETQGNVIVIDN 66 (287)
T ss_dssp HHHHHHHHHHHHHHHTTCCCCSSCEEEEEECCTTSCTHHHHHHHHHHTTTCCEEECT
T ss_pred HHHHHHHHHHHHHHhccccCCCCCeEEEEECCCCCCHHHHHHHHHHHhCCCeEEEec
Confidence 344455555554443333333344679999999999999999999988656677765
No 122
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=97.62 E-value=4.9e-05 Score=73.18 Aligned_cols=58 Identities=16% Similarity=0.205 Sum_probs=39.8
Q ss_pred HHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 247 LQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 247 ~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
....+..+............++..++|.||||+||||+++.|+..++.+++.+++..+
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~~~~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~~D~~ 68 (253)
T 2p5t_B 11 FKHALARNLRSLTRGKKSSKQPIAILLGGQSGAGKTTIHRIKQKEFQGNIVIIDGDSF 68 (253)
T ss_dssp HHHHHHHHHHHHHTTCCCCSSCEEEEEESCGGGTTHHHHHHHHHHTTTCCEEECGGGG
T ss_pred HHHHHHHHHHHHHccCCcccCCeEEEEECCCCCCHHHHHHHHHHhcCCCcEEEecHHH
Confidence 3344444444333322333445679999999999999999999999876777776554
No 123
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=97.61 E-value=3.1e-05 Score=70.40 Aligned_cols=32 Identities=25% Similarity=0.265 Sum_probs=28.6
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
+..++|+|||||||||+++.||..++.+++..
T Consensus 5 ~~~i~l~G~~GsGKst~a~~La~~l~~~~i~~ 36 (185)
T 3trf_A 5 LTNIYLIGLMGAGKTSVGSQLAKLTKRILYDS 36 (185)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred CCEEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 34799999999999999999999999888754
No 124
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=97.57 E-value=0.00028 Score=71.66 Aligned_cols=73 Identities=21% Similarity=0.285 Sum_probs=48.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC------c----------hhHHHHHHHHHHHHHhcCCCc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL------G----------PQAVTKIHQLFDWAKKSKRGL 329 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~------~----------~~~~~~l~~lf~~a~~~~~~~ 329 (512)
..++|+||||+|||++|..+|... +.++++++....... + ......+...+....+...+.
T Consensus 75 ~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s~~~~~a~~~g~d~~~l~i~~~~~~e~~l~~l~~l~~~~~~~ 154 (366)
T 1xp8_A 75 RITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHALDPVYARALGVNTDELLVSQPDNGEQALEIMELLVRSGAID 154 (366)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCChhHHHHHHcCCCHHHceeecCCcHHHHHHHHHHHHhcCCCC
Confidence 468999999999999999987654 567888876542210 0 011233333444444445578
Q ss_pred EEEEccchhhhh
Q 010366 330 LLFIDEADAFLC 341 (512)
Q Consensus 330 vl~lDEid~l~~ 341 (512)
+||||.+..+.+
T Consensus 155 lVVIDsl~~l~~ 166 (366)
T 1xp8_A 155 VVVVDSVAALTP 166 (366)
T ss_dssp EEEEECTTTCCC
T ss_pred EEEEeChHHhcc
Confidence 999999999874
No 125
>2dzn_B 26S protease regulatory subunit 6B homolog; ankyrin repeats, A-helical domain, structural genomics, NPPSFA; 2.20A {Saccharomyces cerevisiae} PDB: 2dzo_B
Probab=97.54 E-value=1.3e-05 Score=63.22 Aligned_cols=50 Identities=20% Similarity=0.175 Sum_probs=40.6
Q ss_pred HHHHHHHHHcCCCcHHHHHHHHHHHHHHHhCCCCCccCHHHHHHHHHHHH
Q 010366 446 DILMEAAAKTEGFSGREIAKLMASVQAAVYGSENCVLDPSLFREVVDYKV 495 (512)
Q Consensus 446 ~~l~~la~~t~g~s~~dI~~lv~~~~aa~~~~~~~~it~e~~~~al~~~~ 495 (512)
.++..||..|+||||+||..+|..+...+.......||.+||..|++...
T Consensus 20 vdl~~lA~~t~G~SGADi~~l~~eAa~~ai~~~~~~i~~~df~~Al~~v~ 69 (82)
T 2dzn_B 20 ADLDSLIIRNDSLSGAVIAAIMQEAGLRAVRKNRYVILQSDLEEAYATQV 69 (82)
T ss_dssp CCSTTTTTSSCCCCHHHHHHHHHHHHHHHHHTTCSEECHHHHHHHHHTTC
T ss_pred CCHHHHHHHcCCCCHHHHHHHHHHHHHHHHHhccCCcCHHHHHHHHHHHH
Confidence 34788999999999999999996655444444557899999999998874
No 126
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=97.53 E-value=0.0018 Score=69.41 Aligned_cols=143 Identities=13% Similarity=0.154 Sum_probs=79.0
Q ss_pred ccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHH----HhCCC---eEEEeCCCCCC--------
Q 010366 242 ILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELAR----KSGLD---YALMTGGDVAP-------- 306 (512)
Q Consensus 242 vg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~----~l~~~---~~~v~~~~~~~-------- 306 (512)
+|.+.....|...+... .....+.+.|+|++|+|||+||+.+++ ..... .+.++.+....
T Consensus 131 ~GR~~~~~~l~~~L~~~-----~~~~~~vv~I~G~gGvGKTtLA~~v~~~~~~~~~~~F~~~~wv~vs~~~~~~~~~~~~ 205 (549)
T 2a5y_B 131 YIREYHVDRVIKKLDEM-----CDLDSFFLFLHGRAGSGKSVIASQALSKSDQLIGINYDSIVWLKDSGTAPKSTFDLFT 205 (549)
T ss_dssp CCCHHHHHHHHHHHHHH-----TTSSSEEEEEECSTTSSHHHHHHHHHHHCSSTBTTTBSEEEEEECCCCSTTHHHHHHH
T ss_pred CCchHHHHHHHHHHhcc-----cCCCceEEEEEcCCCCCHHHHHHHHHHhhhHHHhccCCcEEEEEECCCCCCCHHHHHH
Confidence 49888888887665321 122335799999999999999999997 33222 23333333210
Q ss_pred -----------------CchhHHHHHHHHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCC
Q 010366 307 -----------------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKD 369 (512)
Q Consensus 307 -----------------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~ 369 (512)
........+...+......++..+|+||+++.. ... .+. .. .+
T Consensus 206 ~il~~l~~~~~~~~~~~~~~~~~~~l~~~l~~~L~~~kr~LlVLDdv~~~-----------~~~----~~~-~~----~g 265 (549)
T 2a5y_B 206 DILLMLKSEDDLLNFPSVEHVTSVVLKRMICNALIDRPNTLFVFDDVVQE-----------ETI----RWA-QE----LR 265 (549)
T ss_dssp HHHHHHTTTSCCTTCCCCTTCCHHHHHHHHHHHHTTSTTEEEEEEEECCH-----------HHH----HHH-HH----TT
T ss_pred HHHHHHhcCcccccccccccccHHHHHHHHHHHHcCCCcEEEEEECCCCc-----------hhh----ccc-cc----CC
Confidence 000001111222222222222679999999873 111 111 11 34
Q ss_pred EEEEEeeCCCCCCCHHHHccccceeecCCCCHHHHHHHHHHH
Q 010366 370 IVLALATNRPGDLDSAVADRIDEVLEFPLPGQEERFKLLKLY 411 (512)
Q Consensus 370 viiI~ttN~~~~l~~al~~R~~~~i~~~~p~~~er~~Il~~~ 411 (512)
..||.||....... ...-....+.+++++.++-.+++..+
T Consensus 266 s~ilvTTR~~~v~~--~~~~~~~~~~l~~L~~~ea~~Lf~~~ 305 (549)
T 2a5y_B 266 LRCLVTTRDVEISN--AASQTCEFIEVTSLEIDECYDFLEAY 305 (549)
T ss_dssp CEEEEEESBGGGGG--GCCSCEEEEECCCCCHHHHHHHHHHT
T ss_pred CEEEEEcCCHHHHH--HcCCCCeEEECCCCCHHHHHHHHHHH
Confidence 56777776532111 00112256899999999988888876
No 127
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=97.52 E-value=4.9e-05 Score=70.23 Aligned_cols=33 Identities=24% Similarity=0.421 Sum_probs=28.8
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
+...++|+|||||||||+++.||..++.+++..
T Consensus 24 ~~~~i~l~G~~GsGKsTl~~~La~~l~~~~i~~ 56 (199)
T 3vaa_A 24 AMVRIFLTGYMGAGKTTLGKAFARKLNVPFIDL 56 (199)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred CCCEEEEEcCCCCCHHHHHHHHHHHcCCCEEcc
Confidence 335799999999999999999999999887644
No 128
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=97.50 E-value=0.00028 Score=66.03 Aligned_cols=32 Identities=31% Similarity=0.403 Sum_probs=24.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~ 300 (512)
..++|+||||+|||++++.++..+ +.++++++
T Consensus 24 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~ 58 (235)
T 2w0m_A 24 FFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVT 58 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEE
Confidence 368999999999999999998553 44555554
No 129
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=97.50 E-value=0.00034 Score=66.06 Aligned_cols=35 Identities=20% Similarity=0.108 Sum_probs=28.1
Q ss_pred cceEEecCCCCchHHHHHHHHHH--h-------CCCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARK--S-------GLDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~--l-------~~~~~~v~~~~ 303 (512)
..++|+||||+|||++++.++.. + +...+++++..
T Consensus 25 ~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 25 SITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 35899999999999999999985 3 34577777655
No 130
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=97.46 E-value=0.0003 Score=84.74 Aligned_cols=77 Identities=17% Similarity=0.161 Sum_probs=52.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHH---hCCCeEEEeCCCCCCCch----------------hHHHHHHHHHHHHHhcCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARK---SGLDYALMTGGDVAPLGP----------------QAVTKIHQLFDWAKKSKR 327 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~~~~~~~~~----------------~~~~~l~~lf~~a~~~~~ 327 (512)
+..+++|+||||||||++|.+++.+ .|.+..+++..+...... ...+....+.....+...
T Consensus 1080 ~g~~vll~G~~GtGKT~la~~~~~ea~k~Ge~~~Fit~ee~~~~L~a~~~G~dl~~l~~~~pd~~e~~~~i~~~l~~~~~ 1159 (2050)
T 3cmu_A 1080 MGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGA 1159 (2050)
T ss_dssp TTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSCCCHHHHHHTTCCTTTCEEECCSSHHHHHHHHHHHHHHTC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEEccccHHHHHHHHcCCChhHheeecCcchHHHHHHHHHHHHhCC
Confidence 4457999999999999999999654 367788887766433111 011223344444455566
Q ss_pred CcEEEEccchhhhhhc
Q 010366 328 GLLLFIDEADAFLCER 343 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~ 343 (512)
+.+|+||++..|.+..
T Consensus 1160 ~dlvVIDsl~~L~~~~ 1175 (2050)
T 3cmu_A 1160 VDVIVVDSVAALTPKA 1175 (2050)
T ss_dssp CSEEEESCGGGCCCHH
T ss_pred CCEEEECCcccccccc
Confidence 8999999999986543
No 131
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=97.45 E-value=0.00042 Score=70.01 Aligned_cols=73 Identities=19% Similarity=0.193 Sum_probs=47.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC----------------chhHHHHHHHHHHHHHhcCCCc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL----------------GPQAVTKIHQLFDWAKKSKRGL 329 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~----------------~~~~~~~l~~lf~~a~~~~~~~ 329 (512)
..++|+||||||||+|+..++..+ +.++++++....... .......+............+.
T Consensus 62 ~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~~~~ra~rlgv~~~~l~i~~~~~~e~~l~~~~~l~~~~~~d 141 (356)
T 3hr8_A 62 RIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHALDPVYAKNLGVDLKSLLISQPDHGEQALEIVDELVRSGVVD 141 (356)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHHTCCGGGCEEECCSSHHHHHHHHHHHHHTSCCS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEecccccchHHHHHcCCchhhhhhhhccCHHHHHHHHHHHhhhcCCC
Confidence 368999999999999999998764 567777876543210 0111122222333333334578
Q ss_pred EEEEccchhhhh
Q 010366 330 LLFIDEADAFLC 341 (512)
Q Consensus 330 vl~lDEid~l~~ 341 (512)
+++||.+..+.+
T Consensus 142 lvVIDSi~~l~~ 153 (356)
T 3hr8_A 142 LIVVDSVAALVP 153 (356)
T ss_dssp EEEEECTTTCCC
T ss_pred eEEehHhhhhcC
Confidence 999999998875
No 132
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=97.44 E-value=0.00048 Score=69.56 Aligned_cols=73 Identities=23% Similarity=0.297 Sum_probs=47.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC------c----------hhHHHHHHHHHHHHHhcCCCc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL------G----------PQAVTKIHQLFDWAKKSKRGL 329 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~------~----------~~~~~~l~~lf~~a~~~~~~~ 329 (512)
..++|+||||+|||+++..++... +.+.++++....... + ......+..+.........+.
T Consensus 62 ~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~~~~~~a~~lG~~~~~l~i~~~~~~e~~l~~~~~l~~~~~~~ 141 (349)
T 2zr9_A 62 RVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHALDPEYAKKLGVDTDSLLVSQPDTGEQALEIADMLVRSGALD 141 (349)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHTTTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCCcCHHHHHHcCCCHHHeEEecCCCHHHHHHHHHHHHhcCCCC
Confidence 458999999999999999997653 567777775442210 0 001222223333333334588
Q ss_pred EEEEccchhhhh
Q 010366 330 LLFIDEADAFLC 341 (512)
Q Consensus 330 vl~lDEid~l~~ 341 (512)
+|+||++..+.+
T Consensus 142 lIVIDsl~~l~~ 153 (349)
T 2zr9_A 142 IIVIDSVAALVP 153 (349)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcChHhhcc
Confidence 999999999874
No 133
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=97.44 E-value=8.7e-05 Score=66.25 Aligned_cols=31 Identities=16% Similarity=0.154 Sum_probs=27.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.++|.|||||||||+++.|+..++.+++..+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~~i~~d 33 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYPIIKGS 33 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCCEEECC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeeecCc
Confidence 5899999999999999999999998776443
No 134
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=97.40 E-value=8.4e-05 Score=67.27 Aligned_cols=31 Identities=52% Similarity=0.817 Sum_probs=27.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|+|+||+||||+++.|+..++.+++..
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~~~~ 42 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKYINV 42 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeEEEH
Confidence 4699999999999999999999998777643
No 135
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=97.39 E-value=9.2e-05 Score=67.22 Aligned_cols=30 Identities=30% Similarity=0.530 Sum_probs=27.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|+|+|||||||+|+.|+..++.+++..
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id~ 33 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVGLLDT 33 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCCEEeC
Confidence 599999999999999999999999887754
No 136
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=97.38 E-value=0.00047 Score=69.76 Aligned_cols=73 Identities=21% Similarity=0.305 Sum_probs=48.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCC------c----------hhHHHHHHHHHHHHHhcCCCc
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPL------G----------PQAVTKIHQLFDWAKKSKRGL 329 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~------~----------~~~~~~l~~lf~~a~~~~~~~ 329 (512)
..++|+||||+|||++|..+|... +.++++++....... + ......+..++....+...+.
T Consensus 64 ~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~~~~~a~~~g~~~~~l~i~~~~~~e~~~~~~~~l~~~~~~~ 143 (356)
T 1u94_A 64 RIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAVD 143 (356)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCCS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCccHHHHHHcCCChhheeeeCCCCHHHHHHHHHHHHhccCCC
Confidence 468999999999999999997653 567888876432210 0 011233334444333334588
Q ss_pred EEEEccchhhhh
Q 010366 330 LLFIDEADAFLC 341 (512)
Q Consensus 330 vl~lDEid~l~~ 341 (512)
+|+||.+..+..
T Consensus 144 lVVIDsl~~l~~ 155 (356)
T 1u94_A 144 VIVVDSVAALTP 155 (356)
T ss_dssp EEEEECGGGCCC
T ss_pred EEEEcCHHHhcc
Confidence 999999999875
No 137
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=97.37 E-value=0.00011 Score=67.83 Aligned_cols=31 Identities=39% Similarity=0.604 Sum_probs=27.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|+|||||||||+|+.|+..++.+++.+
T Consensus 21 ~~I~l~G~~GsGKST~a~~La~~l~~~~i~~ 51 (201)
T 2cdn_A 21 MRVLLLGPPGAGKGTQAVKLAEKLGIPQIST 51 (201)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCcEEeh
Confidence 4699999999999999999999999887654
No 138
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=97.37 E-value=9.3e-05 Score=66.17 Aligned_cols=31 Identities=26% Similarity=0.343 Sum_probs=28.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.+++|.|+|||||||+++.||..++.+++..
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~id~ 38 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVLDT 38 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 4799999999999999999999999988754
No 139
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=97.37 E-value=0.0001 Score=66.41 Aligned_cols=29 Identities=38% Similarity=0.553 Sum_probs=26.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.++|.|||||||||+++.||..++.+++.
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~~~~d 34 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDLVFLD 34 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCEEc
Confidence 59999999999999999999999987764
No 140
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=97.36 E-value=0.002 Score=68.07 Aligned_cols=75 Identities=17% Similarity=0.327 Sum_probs=52.5
Q ss_pred cEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCCC--CCCHHHHccccceeecCCCCHHHHHH
Q 010366 329 LLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRPG--DLDSAVADRIDEVLEFPLPGQEERFK 406 (512)
Q Consensus 329 ~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~~--~l~~al~~R~~~~i~~~~p~~~er~~ 406 (512)
.+|+|||+..++.... ......+..+.+.- ...++.+|++|..+. .++..+.+.|...|.|...+..+...
T Consensus 299 ivlvIDE~~~ll~~~~-----~~~~~~l~~Lar~g--Ra~GI~LIlaTQrp~~dvl~~~i~~n~~~RI~lrv~s~~dsr~ 371 (512)
T 2ius_A 299 IVVLVDEFADLMMTVG-----KKVEELIARLAQKA--RAAGIHLVLATQRPSVDVITGLIKANIPTRIAFTVSSKIDSRT 371 (512)
T ss_dssp EEEEEETHHHHHHHHH-----HHHHHHHHHHHHHC--GGGTEEEEEEESCCCTTTSCHHHHHHCCEEEEECCSSHHHHHH
T ss_pred EEEEEeCHHHHHhhhh-----HHHHHHHHHHHHHh--hhCCcEEEEEecCCccccccHHHHhhcCCeEEEEcCCHHHHHH
Confidence 4899999988754211 12233344443332 334678888888876 68888888898899999999999888
Q ss_pred HHHH
Q 010366 407 LLKL 410 (512)
Q Consensus 407 Il~~ 410 (512)
|+..
T Consensus 372 ilg~ 375 (512)
T 2ius_A 372 ILDQ 375 (512)
T ss_dssp HHSS
T ss_pred hcCC
Confidence 8754
No 141
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=97.33 E-value=0.00096 Score=66.58 Aligned_cols=74 Identities=18% Similarity=0.226 Sum_probs=47.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---------CCCeEEEeCCCCCC----------Cch---------------hHH--
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGDVAP----------LGP---------------QAV-- 312 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---------~~~~~~v~~~~~~~----------~~~---------------~~~-- 312 (512)
..++|+||||+|||+++..+|... +.+.++++...... .+. ...
T Consensus 108 ~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~~g~~~~~~~~~l~~~~~~~~~~~ 187 (324)
T 2z43_A 108 TMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKALGLDIDNVMNNIYYIRAINTDHQ 187 (324)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHHTTCCHHHHHHTEEEEECCSHHHH
T ss_pred cEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHHhCCCHHHHhccEEEEeCCCHHHH
Confidence 468999999999999999998764 45677777654210 000 001
Q ss_pred -HHHHHHHHHHHhcCCCcEEEEccchhhhhh
Q 010366 313 -TKIHQLFDWAKKSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 313 -~~l~~lf~~a~~~~~~~vl~lDEid~l~~~ 342 (512)
..+..+...+.....+.+|+||.+..+...
T Consensus 188 ~~~l~~l~~~~~~~~~~~lvVIDsl~~l~~~ 218 (324)
T 2z43_A 188 IAIVDDLQELVSKDPSIKLIVVDSVTSHFRA 218 (324)
T ss_dssp HHHHHHHHHHHHHCTTEEEEEETTTTHHHHH
T ss_pred HHHHHHHHHHHHhccCCCEEEEeCcHHHhhh
Confidence 112223333333245789999999998753
No 142
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=97.32 E-value=0.00013 Score=65.30 Aligned_cols=29 Identities=34% Similarity=0.756 Sum_probs=25.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
..+.|+|||||||||+++.||..++.+++
T Consensus 5 ~~i~l~G~~GsGKSTl~~~La~~l~~~~i 33 (173)
T 1kag_A 5 RNIFLVGPMGAGKSTIGRQLAQQLNMEFY 33 (173)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHTTCEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 35999999999999999999999886554
No 143
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=97.32 E-value=0.00015 Score=66.00 Aligned_cols=30 Identities=30% Similarity=0.347 Sum_probs=26.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
..++|.|+||+||||+++.|+..++.+++.
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~~i~ 35 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLPLLS 35 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCeEec
Confidence 468999999999999999999999877664
No 144
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=97.31 E-value=0.0001 Score=67.14 Aligned_cols=31 Identities=39% Similarity=0.566 Sum_probs=26.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH-hCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARK-SGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~-l~~~~~~v 299 (512)
..++|+|+|||||||+++.|+.. +|.+++.+
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~l~g~~~id~ 42 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAELDGFQHLEV 42 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHSTTEEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCEEeeH
Confidence 46999999999999999999999 67666643
No 145
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=97.27 E-value=0.002 Score=66.74 Aligned_cols=72 Identities=22% Similarity=0.286 Sum_probs=47.5
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCC---------------------CchhHHHHHHHHHHHH
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAP---------------------LGPQAVTKIHQLFDWA 322 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~---------------------~~~~~~~~l~~lf~~a 322 (512)
++..++++||+|+||||++..||..+ |..+..+++..+.+ .+......+...+..+
T Consensus 99 ~p~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~~D~~R~aa~eqL~~~~~~~gvpv~~~~~~~dp~~i~~~al~~a 178 (443)
T 3dm5_A 99 KPTILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVCSDTWRPGAYHQLRQLLDRYHIEVFGNPQEKDAIKLAKEGVDYF 178 (443)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEECCCSSTHHHHHHHHHHGGGTCEEECCTTCCCHHHHHHHHHHHH
T ss_pred CCeEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCcchhHHHHHHHHHHhcCCcEEecCCCCCHHHHHHHHHHHH
Confidence 45689999999999999999998776 56666666543311 1122233344455555
Q ss_pred HhcCCCcEEEEccchhh
Q 010366 323 KKSKRGLLLFIDEADAF 339 (512)
Q Consensus 323 ~~~~~~~vl~lDEid~l 339 (512)
.... +.+|+||-...+
T Consensus 179 ~~~~-~DvVIIDTaGrl 194 (443)
T 3dm5_A 179 KSKG-VDIIIVDTAGRH 194 (443)
T ss_dssp HHTT-CSEEEEECCCCS
T ss_pred HhCC-CCEEEEECCCcc
Confidence 5433 789999988653
No 146
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=97.27 E-value=0.00039 Score=68.78 Aligned_cols=79 Identities=10% Similarity=0.126 Sum_probs=50.1
Q ss_pred cCCCCcceEEecCCCCchHHHHHHHHHHh-----CCCeEEEeCCCCCC------Cc----------hhHHHHH-HHHHHH
Q 010366 264 HNAPFRNMLFYGPPGTGKTMAARELARKS-----GLDYALMTGGDVAP------LG----------PQAVTKI-HQLFDW 321 (512)
Q Consensus 264 ~~~p~~~vLL~GppGtGKT~lA~alA~~l-----~~~~~~v~~~~~~~------~~----------~~~~~~l-~~lf~~ 321 (512)
+|.|++.++|+||||+|||+|+..++... +...++++...-.. .+ ....+.+ ..+.+.
T Consensus 24 GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~ra~~lGvd~d~llv~~~~~~E~~~l~i~~~ 103 (333)
T 3io5_A 24 GGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPAYLRSMGVDPERVIHTPVQSLEQLRIDMVNQ 103 (333)
T ss_dssp CCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHHHHHHTTCCGGGEEEEECSBHHHHHHHHHHH
T ss_pred CCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHHHHHHhCCCHHHeEEEcCCCHHHHHHHHHHH
Confidence 55666678999999999999988775543 56677887654321 00 0111222 223333
Q ss_pred H--HhcCCCcEEEEccchhhhhh
Q 010366 322 A--KKSKRGLLLFIDEADAFLCE 342 (512)
Q Consensus 322 a--~~~~~~~vl~lDEid~l~~~ 342 (512)
+ .+...+.+|+||-+..+.+.
T Consensus 104 l~~i~~~~~~lvVIDSI~aL~~~ 126 (333)
T 3io5_A 104 LDAIERGEKVVVFIDSLGNLASK 126 (333)
T ss_dssp HHTCCTTCCEEEEEECSTTCBCC
T ss_pred HHHhhccCceEEEEecccccccc
Confidence 3 23345899999999998753
No 147
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=97.26 E-value=0.0005 Score=63.16 Aligned_cols=23 Identities=30% Similarity=0.599 Sum_probs=21.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+.|+||+|+||||+++.++..+
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g~~ 25 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASEVL 25 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHhhc
Confidence 48899999999999999999876
No 148
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=97.26 E-value=0.0016 Score=65.61 Aligned_cols=39 Identities=18% Similarity=0.152 Sum_probs=29.7
Q ss_pred CCCC-cceEEecCCCCchHHHHHHHHHHh---------CCCeEEEeCCC
Q 010366 265 NAPF-RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGD 303 (512)
Q Consensus 265 ~~p~-~~vLL~GppGtGKT~lA~alA~~l---------~~~~~~v~~~~ 303 (512)
+.|. ..++|+||||+|||+++..+|... +.+.++++...
T Consensus 118 Gl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~ 166 (343)
T 1v5w_A 118 GIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTEN 166 (343)
T ss_dssp SBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSS
T ss_pred CCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCC
Confidence 4343 357999999999999999998862 45677777654
No 149
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=97.24 E-value=0.00015 Score=66.21 Aligned_cols=31 Identities=23% Similarity=0.409 Sum_probs=27.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|.|||||||||+++.|+..++.+++..
T Consensus 10 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~~ 40 (196)
T 2c95_A 10 NIIFVVGGPGSGKGTQCEKIVQKYGYTHLST 40 (196)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEcH
Confidence 4699999999999999999999998776643
No 150
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=97.24 E-value=0.0013 Score=61.44 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=26.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC---------CCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG---------LDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~---------~~~~~v~~~~ 303 (512)
.-+.|+||+|+||||+++.++.... ...++++...
T Consensus 26 ~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 26 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 3589999999999999999997542 2366666543
No 151
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=97.23 E-value=0.00012 Score=66.80 Aligned_cols=34 Identities=29% Similarity=0.480 Sum_probs=29.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGG 302 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~ 302 (512)
..+.|.||||+||||+++.|+...+.+.+.+++.
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i~~d 43 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHFHSD 43 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEECTT
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEEccc
Confidence 4689999999999999999999877777777654
No 152
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=97.23 E-value=0.00013 Score=64.89 Aligned_cols=29 Identities=34% Similarity=0.580 Sum_probs=25.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|+|||||||||+++.| ..+|.+++.+
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~i~~ 31 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKVIVM 31 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcEEEH
Confidence 4899999999999999999 8888876654
No 153
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=97.23 E-value=0.00019 Score=69.19 Aligned_cols=32 Identities=31% Similarity=0.488 Sum_probs=28.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
.++|+|||||||||+|+.||..++.+++..+.
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~~i~~D~ 34 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWPVVALDR 34 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCCEEECCS
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCeEEeccH
Confidence 48999999999999999999999988775543
No 154
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=97.23 E-value=0.00021 Score=63.93 Aligned_cols=29 Identities=34% Similarity=0.590 Sum_probs=26.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.++|+|+|||||||+++.|+..++.+++.
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~~id 32 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYEFVD 32 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCEEEE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCcEEc
Confidence 59999999999999999999999987664
No 155
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=97.19 E-value=0.00026 Score=65.26 Aligned_cols=30 Identities=20% Similarity=0.457 Sum_probs=26.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
..++|+||||+||||+++.|+..++..++.
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg~~~i~ 48 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACGYPFIE 48 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHTCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCEEEe
Confidence 469999999999999999999999876654
No 156
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=97.19 E-value=0.00022 Score=64.85 Aligned_cols=30 Identities=23% Similarity=0.368 Sum_probs=26.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
..++|.|+|||||||+++.|+..++.+++.
T Consensus 4 ~~I~l~G~~GsGKsT~a~~L~~~~~~~~i~ 33 (196)
T 1tev_A 4 LVVFVLGGPGAGKGTQCARIVEKYGYTHLS 33 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHCCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCeEEe
Confidence 468999999999999999999999876653
No 157
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=97.18 E-value=0.00024 Score=66.48 Aligned_cols=31 Identities=29% Similarity=0.438 Sum_probs=27.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|.|||||||||+++.||..++.+++..
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 35 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHAAHLAT 35 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeh
Confidence 4699999999999999999999999776644
No 158
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=97.18 E-value=0.00018 Score=64.98 Aligned_cols=29 Identities=28% Similarity=0.382 Sum_probs=22.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
..++|+|+|||||||+++.|+..++.+++
T Consensus 6 ~~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 6 PIIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp CEEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 46899999999999999999999998876
No 159
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=97.16 E-value=0.00029 Score=63.23 Aligned_cols=30 Identities=23% Similarity=0.402 Sum_probs=25.6
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
...++|+||||+||||+++.|+..+|..++
T Consensus 8 g~~i~l~G~~GsGKSTl~~~l~~~~g~~~i 37 (175)
T 1knq_A 8 HHIYVLMGVSGSGKSAVASEVAHQLHAAFL 37 (175)
T ss_dssp SEEEEEECSTTSCHHHHHHHHHHHHTCEEE
T ss_pred CcEEEEEcCCCCCHHHHHHHHHHhhCcEEE
Confidence 346999999999999999999998875444
No 160
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=97.16 E-value=0.00023 Score=64.58 Aligned_cols=29 Identities=38% Similarity=0.705 Sum_probs=25.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.++|+|||||||||+++.|+..++.+++.
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~~~~i~ 34 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELGFKKLS 34 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEec
Confidence 58999999999999999999999876553
No 161
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=97.16 E-value=0.00034 Score=63.16 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.0
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
+...+.|+|++||||||+++.|+..+ |.+++.+++
T Consensus 4 ~g~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~d~ 41 (179)
T 2pez_A 4 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 41 (179)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEECC
Confidence 33468899999999999999999987 888887764
No 162
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=97.14 E-value=0.00023 Score=63.36 Aligned_cols=30 Identities=17% Similarity=0.258 Sum_probs=26.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|+|+|||||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~i~~ 31 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPFYDV 31 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCEEEH
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCEEEC
Confidence 489999999999999999999999877643
No 163
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=97.13 E-value=0.00022 Score=66.49 Aligned_cols=30 Identities=27% Similarity=0.513 Sum_probs=26.6
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|+|||||||||+|+.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEEeH
Confidence 488999999999999999999998777654
No 164
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=97.13 E-value=0.00023 Score=66.29 Aligned_cols=30 Identities=27% Similarity=0.453 Sum_probs=26.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|+|||||||||+|+.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~~i~~ 31 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIPHIST 31 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCcEeeH
Confidence 388999999999999999999998877654
No 165
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=97.13 E-value=0.00022 Score=66.72 Aligned_cols=31 Identities=26% Similarity=0.510 Sum_probs=27.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|.|+|||||||+++.||..++.+++..
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 36 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGLAHLST 36 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCceEEeh
Confidence 4699999999999999999999999877654
No 166
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=97.13 E-value=0.00021 Score=65.43 Aligned_cols=30 Identities=27% Similarity=0.493 Sum_probs=26.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
..++|+|||||||||+++.|+..++.+++.
T Consensus 13 ~~I~l~G~~GsGKsT~a~~L~~~l~~~~i~ 42 (199)
T 2bwj_A 13 KIIFIIGGPGSGKGTQCEKLVEKYGFTHLS 42 (199)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHTCEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCeEEc
Confidence 369999999999999999999999866554
No 167
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=97.12 E-value=0.00023 Score=65.67 Aligned_cols=31 Identities=19% Similarity=0.331 Sum_probs=26.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|+|+|||||||+++.|++.++.+++..
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~~~i~~ 46 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSFVHLSA 46 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCceEEeH
Confidence 4689999999999999999999988766543
No 168
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=97.12 E-value=0.00031 Score=67.11 Aligned_cols=33 Identities=24% Similarity=0.377 Sum_probs=28.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
++..++|+||||+||||+|+.|+..++.+++.+
T Consensus 28 ~~~~I~l~G~~GsGKsT~a~~L~~~~g~~~is~ 60 (243)
T 3tlx_A 28 PDGRYIFLGAPGSGKGTQSLNLKKSHCYCHLST 60 (243)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHhCCeEEec
Confidence 445799999999999999999999998766644
No 169
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=97.11 E-value=0.0002 Score=64.38 Aligned_cols=27 Identities=37% Similarity=0.594 Sum_probs=22.6
Q ss_pred cceEEecCCCCchHHHHHHHHH-HhCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELAR-KSGLD 295 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~-~l~~~ 295 (512)
..++|.||||+||||+|+.|+. .++..
T Consensus 3 ~~I~i~G~~GsGKST~a~~L~~~~~~~~ 30 (181)
T 1ly1_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFY 30 (181)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEE
T ss_pred eEEEEecCCCCCHHHHHHHHHhhcCCcE
Confidence 3589999999999999999998 45433
No 170
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=97.11 E-value=0.0037 Score=59.01 Aligned_cols=33 Identities=33% Similarity=0.352 Sum_probs=25.2
Q ss_pred cceEEecCCCCchHHHHHHHHHH----hCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARK----SGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~----l~~~~~~v~~ 301 (512)
.-++|+|+||+|||++|..+|.. .+.++++++.
T Consensus 31 ~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~ 67 (251)
T 2zts_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTL 67 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEES
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecc
Confidence 35899999999999999887543 3566666653
No 171
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=97.10 E-value=0.00034 Score=66.20 Aligned_cols=31 Identities=29% Similarity=0.426 Sum_probs=27.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|.|+|||||||+++.||..++.+++..
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 47 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCVCHLAT 47 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceecH
Confidence 4699999999999999999999998776644
No 172
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=97.10 E-value=0.00026 Score=64.27 Aligned_cols=25 Identities=20% Similarity=0.349 Sum_probs=23.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++|.|||||||||+++.|+..++
T Consensus 4 ~~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 4 KVVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 3589999999999999999999887
No 173
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=97.09 E-value=0.0029 Score=63.77 Aligned_cols=35 Identities=23% Similarity=0.184 Sum_probs=27.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC---------CCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG---------LDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~---------~~~~~v~~~~ 303 (512)
..+.|+||||+|||+|++.++.... ...++++...
T Consensus 132 ~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 132 AITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 4688999999999999999998762 3457777644
No 174
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=97.07 E-value=0.00032 Score=63.70 Aligned_cols=31 Identities=23% Similarity=0.359 Sum_probs=26.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|+|+|||||||+++.|+..++.+++..
T Consensus 7 ~~I~l~G~~GsGKsT~~~~L~~~l~~~~i~~ 37 (194)
T 1qf9_A 7 NVVFVLGGPGSGKGTQCANIVRDFGWVHLSA 37 (194)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhCCeEeeH
Confidence 4689999999999999999999998766543
No 175
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=97.07 E-value=0.00024 Score=66.96 Aligned_cols=31 Identities=19% Similarity=0.323 Sum_probs=27.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..++|.|||||||||+++.||..++.+++.+
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~~~i~~ 38 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFELKHLSS 38 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSSEEEEH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCeEEec
Confidence 4699999999999999999999998766643
No 176
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=97.06 E-value=0.0016 Score=70.21 Aligned_cols=31 Identities=35% Similarity=0.648 Sum_probs=24.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v 299 (512)
+.++|+||||||||+++.+++..+ +.++..+
T Consensus 205 ~~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ 238 (574)
T 3e1s_A 205 RLVVLTGGPGTGKSTTTKAVADLAESLGLEVGLC 238 (574)
T ss_dssp SEEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 369999999999999999997754 4555544
No 177
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=97.06 E-value=0.00033 Score=65.82 Aligned_cols=29 Identities=24% Similarity=0.474 Sum_probs=25.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
+.++|.||||+||+|.|+.|++.++.+.+
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g~~hI 58 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFHFNHL 58 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHCCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHCCceE
Confidence 56889999999999999999999986544
No 178
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=97.04 E-value=0.00038 Score=64.91 Aligned_cols=29 Identities=38% Similarity=0.715 Sum_probs=25.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.++|.||||+||+|.|+.||+.++.+.+.
T Consensus 2 ~Iil~GpPGsGKgTqa~~La~~~g~~~is 30 (206)
T 3sr0_A 2 ILVFLGPPGAGKGTQAKRLAKEKGFVHIS 30 (206)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHCCeEEc
Confidence 37899999999999999999999876543
No 179
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=97.03 E-value=0.0004 Score=64.05 Aligned_cols=35 Identities=29% Similarity=0.498 Sum_probs=27.6
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
+..+.|.||+|+||||+++.|+..+|. +.+++.++
T Consensus 29 g~~i~l~G~~GsGKSTl~~~L~~~~g~--~~i~~d~~ 63 (200)
T 4eun_A 29 TRHVVVMGVSGSGKTTIAHGVADETGL--EFAEADAF 63 (200)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHCC--EEEEGGGG
T ss_pred CcEEEEECCCCCCHHHHHHHHHHhhCC--eEEccccc
Confidence 346999999999999999999999865 44444443
No 180
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=97.02 E-value=0.0055 Score=69.61 Aligned_cols=56 Identities=20% Similarity=0.196 Sum_probs=39.1
Q ss_pred cccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHH------hCCCeEEEeCCC
Q 010366 241 VILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARK------SGLDYALMTGGD 303 (512)
Q Consensus 241 vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~------l~~~~~~v~~~~ 303 (512)
.||.+.....|...+... .+.+.+.|+||+|+|||+||+.+++. +....+.++.+.
T Consensus 130 ~VGRe~eLeeL~elL~~~-------d~~RVV~IvGmGGIGKTTLAk~Vy~d~rV~~~Fd~gV~WVsVs~ 191 (1221)
T 1vt4_I 130 NVSRLQPYLKLRQALLEL-------RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKN 191 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHC-------CSSCEEEECCSTTSSHHHHHHHHHHHCHHHHHHSSCEEEEECCC
T ss_pred CCCcHHHHHHHHHHHhcc-------CCCeEEEEEcCCCccHHHHHHHHHHhhHHHHhCCCcEEEEEeCC
Confidence 389888888887655321 12357999999999999999999853 334455555443
No 181
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=97.02 E-value=0.00036 Score=65.45 Aligned_cols=30 Identities=20% Similarity=0.287 Sum_probs=26.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
..++|.|||||||||+++.||..++.+++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~~~i~ 35 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQLAHIS 35 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCCEECC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCceec
Confidence 469999999999999999999999875543
No 182
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=97.00 E-value=0.0018 Score=61.10 Aligned_cols=33 Identities=27% Similarity=0.393 Sum_probs=24.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
..++|+||||+|||+++..++... +.+.++++.
T Consensus 24 ~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~ 59 (247)
T 2dr3_A 24 NVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVAL 59 (247)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEES
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEc
Confidence 368999999999999998886542 445555543
No 183
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=96.97 E-value=0.0012 Score=60.06 Aligned_cols=31 Identities=29% Similarity=0.364 Sum_probs=26.7
Q ss_pred eEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 271 MLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
+.|.||+||||||+++.|++.+ |.+++....
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~~~ 36 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILKRE 36 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEEES
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEeeC
Confidence 7899999999999999999998 888876643
No 184
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=96.96 E-value=0.0033 Score=65.07 Aligned_cols=36 Identities=28% Similarity=0.320 Sum_probs=28.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
++..++|+||+|+||||++..||..+ |..+..+++.
T Consensus 96 ~~~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~~D 134 (433)
T 3kl4_A 96 LPFIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVAAD 134 (433)
T ss_dssp SSEEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecC
Confidence 35679999999999999999998765 5666665543
No 185
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=96.95 E-value=0.00064 Score=61.77 Aligned_cols=31 Identities=32% Similarity=0.383 Sum_probs=27.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~ 300 (512)
.+.|+|+|||||||+++.|+..+ |.+++..+
T Consensus 2 ~I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~~d 35 (195)
T 2pbr_A 2 LIAFEGIDGSGKTTQAKKLYEYLKQKGYFVSLYR 35 (195)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 37899999999999999999988 88877665
No 186
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=96.94 E-value=0.00053 Score=63.88 Aligned_cols=30 Identities=23% Similarity=0.386 Sum_probs=26.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|.||||+||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~~i~~ 31 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIPQIST 31 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEeH
Confidence 489999999999999999999998877655
No 187
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=96.92 E-value=0.00069 Score=65.36 Aligned_cols=33 Identities=24% Similarity=0.507 Sum_probs=28.1
Q ss_pred cceEEecCCCCchHHHHHHHHHH---hCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARK---SGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~ 301 (512)
..++|+|+||+||||+|+.|+.. .|.+++.++.
T Consensus 5 ~lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~~~ 40 (260)
T 3a4m_A 5 MLIILTGLPGVGKSTFSKNLAKILSKNNIDVIVLGS 40 (260)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEECT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEECc
Confidence 46999999999999999999998 6777775554
No 188
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=96.91 E-value=0.0019 Score=76.96 Aligned_cols=76 Identities=18% Similarity=0.220 Sum_probs=52.4
Q ss_pred CcceEEecCCCCchHHHHHHHHHH---hCCCeEEEeCCCCCCCc----------------hhHHHHHHHHHHHHHhcCCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARK---SGLDYALMTGGDVAPLG----------------PQAVTKIHQLFDWAKKSKRG 328 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~---l~~~~~~v~~~~~~~~~----------------~~~~~~l~~lf~~a~~~~~~ 328 (512)
...++|+||||||||++|..++.. .|.+.++++........ ....+.+..++........+
T Consensus 34 G~i~lI~G~pGsGKT~LAlqla~~~~~~G~~vlYI~te~~~~~l~~~~lg~dl~~i~i~~p~t~e~l~~ll~~L~~~~~~ 113 (1706)
T 3cmw_A 34 GRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIYARKLGVDIDNLLCSQPDTGEQALEICDALARSGAV 113 (1706)
T ss_dssp TSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHHHHHTTCCGGGCEEECCSSHHHHHHHHHHHHHHTCC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhCCCceEEEEecCccHHHHHHhhccCccceeeeccCcHHHHHHHHHHHHhccCC
Confidence 347999999999999999999765 36778888876543210 01123344555555444558
Q ss_pred cEEEEccchhhhhhc
Q 010366 329 LLLFIDEADAFLCER 343 (512)
Q Consensus 329 ~vl~lDEid~l~~~~ 343 (512)
.+|+||++..+....
T Consensus 114 ~LVVIDSLt~L~~~~ 128 (1706)
T 3cmw_A 114 DVIVVDSVAALTPKA 128 (1706)
T ss_dssp SEEEESCSTTCCCHH
T ss_pred CEEEEcchhhhcccc
Confidence 899999999987643
No 189
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=96.91 E-value=0.00084 Score=61.84 Aligned_cols=35 Identities=23% Similarity=0.230 Sum_probs=27.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++..+.|.||+||||||+++.|+..+ |...+++++
T Consensus 24 ~g~~i~l~G~sGsGKSTl~~~La~~l~~~G~~~~~~d~ 61 (200)
T 3uie_A 24 KGCVIWVTGLSGSGKSTLACALNQMLYQKGKLCYILDG 61 (200)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhcCceEEEecC
Confidence 44579999999999999999999987 444345553
No 190
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=96.89 E-value=0.001 Score=64.33 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+...++|+||+|+||||++++++..+
T Consensus 24 ~g~~v~i~Gp~GsGKSTll~~l~g~~ 49 (261)
T 2eyu_A 24 KMGLILVTGPTGSGKSTTIASMIDYI 49 (261)
T ss_dssp SSEEEEEECSTTCSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCccHHHHHHHHHHhC
Confidence 33469999999999999999998765
No 191
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=96.89 E-value=0.0016 Score=61.80 Aligned_cols=31 Identities=19% Similarity=0.169 Sum_probs=26.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.++++||+|+|||.++..++..++.+.+.+.
T Consensus 110 ~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~ 140 (237)
T 2fz4_A 110 RGCIVLPTGSGKTHVAMAAINELSTPTLIVV 140 (237)
T ss_dssp EEEEEESSSTTHHHHHHHHHHHSCSCEEEEE
T ss_pred CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEe
Confidence 5999999999999999999888876666554
No 192
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=96.89 E-value=0.00063 Score=63.67 Aligned_cols=28 Identities=21% Similarity=0.355 Sum_probs=25.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
.+.|.|||||||||+++.|+..++.+++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g~~~~ 34 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQWHLL 34 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 5899999999999999999999887655
No 193
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=96.88 E-value=0.00054 Score=68.17 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=28.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
..++|+||||||||++++.||..++..++.++.
T Consensus 6 ~~i~i~GptGsGKTtla~~La~~l~~~iis~Ds 38 (323)
T 3crm_A 6 PAIFLMGPTAAGKTDLAMALADALPCELISVDS 38 (323)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEEECT
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCcEEeccc
Confidence 368999999999999999999999877776653
No 194
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=96.87 E-value=0.00058 Score=62.59 Aligned_cols=28 Identities=25% Similarity=0.576 Sum_probs=25.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
.+.|.|+|||||||+++.|+..++.+++
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~~~ 29 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYEIF 29 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCEEE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCcEE
Confidence 4889999999999999999999997655
No 195
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=96.87 E-value=0.00051 Score=63.52 Aligned_cols=27 Identities=19% Similarity=0.276 Sum_probs=23.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
..++|+|+|||||||+++.|+..++.+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 37 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYLKNN 37 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHT
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHc
Confidence 469999999999999999999987643
No 196
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=96.85 E-value=0.00056 Score=63.31 Aligned_cols=25 Identities=20% Similarity=0.284 Sum_probs=22.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++|+|+|||||||+++.|+..++
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l~ 34 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEALC 34 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4699999999999999999999865
No 197
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=96.85 E-value=0.00066 Score=63.84 Aligned_cols=30 Identities=30% Similarity=0.479 Sum_probs=25.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|.|||||||||+++.|+..++.+++..
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg~~~i~~ 31 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYSLAHIES 31 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCeEEch
Confidence 389999999999999999999998765543
No 198
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=96.84 E-value=0.00039 Score=63.08 Aligned_cols=31 Identities=16% Similarity=0.322 Sum_probs=25.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC---CCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG---LDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~ 300 (512)
.++|.|||||||||+++.|+..++ .++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~~~g~~~~~~~ 36 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILDNQGINNKIIN 36 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhcCceEEEEE
Confidence 489999999999999999999876 3355553
No 199
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=96.83 E-value=0.00069 Score=62.20 Aligned_cols=32 Identities=16% Similarity=0.217 Sum_probs=27.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHh-CCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS-GLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l-~~~~~~v~ 300 (512)
..+.|.|+|||||||+++.|+..+ |.+++.+.
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~~ 37 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYLN 37 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEEe
Confidence 468999999999999999999998 56777654
No 200
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=96.82 E-value=0.00049 Score=63.43 Aligned_cols=30 Identities=20% Similarity=0.176 Sum_probs=25.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.+.|+||+||||||+++.|+. +|.+++..+
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g~~~i~~d 32 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LGAYVLDAD 32 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TTCEEEEHH
T ss_pred EEEEECCCCcCHHHHHHHHHH-CCCEEEEcc
Confidence 589999999999999999999 887666543
No 201
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=96.81 E-value=0.0056 Score=62.81 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=26.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---------CCCeEEEeCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---------GLDYALMTGGD 303 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---------~~~~~~v~~~~ 303 (512)
..++|+||||||||+|++.++-.. +...++++...
T Consensus 179 ei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 179 SITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred cEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 468999999999999999876443 23467777654
No 202
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=96.81 E-value=0.0059 Score=59.25 Aligned_cols=24 Identities=33% Similarity=0.407 Sum_probs=20.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..++|+||||+|||+|+..++..+
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~ 54 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQI 54 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998643
No 203
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.77 E-value=0.0028 Score=58.13 Aligned_cols=68 Identities=18% Similarity=0.172 Sum_probs=40.8
Q ss_pred cceEEecCCCCchH-HHHHHHHHHh--CCCeEEEeCCCCCCCchhHHHH------------HHHHHHHHHhcCCCcEEEE
Q 010366 269 RNMLFYGPPGTGKT-MAARELARKS--GLDYALMTGGDVAPLGPQAVTK------------IHQLFDWAKKSKRGLLLFI 333 (512)
Q Consensus 269 ~~vLL~GppGtGKT-~lA~alA~~l--~~~~~~v~~~~~~~~~~~~~~~------------l~~lf~~a~~~~~~~vl~l 333 (512)
.-.++|||.|+||| +|.+++.+.. +..++++...--..++...... ...++... .+..+|+|
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~D~R~~~~i~S~~g~~~~A~~~~~~~d~~~~~---~~~DvIlI 97 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA---LGVAVIGI 97 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETTCCCGGGSCCHHHHHHSEEEEESSGGGGHHHH---HTCSEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEccccCccchhhhhhccCCcccceecCCHHHHHHhc---cCCCEEEE
Confidence 35888999999999 8888886653 5677777643111111000111 11222222 23679999
Q ss_pred ccchhh
Q 010366 334 DEADAF 339 (512)
Q Consensus 334 DEid~l 339 (512)
||+.-|
T Consensus 98 DEaQFf 103 (195)
T 1w4r_A 98 DEGQFF 103 (195)
T ss_dssp SSGGGC
T ss_pred Echhhh
Confidence 999986
No 204
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=96.75 E-value=0.00094 Score=61.44 Aligned_cols=30 Identities=30% Similarity=0.464 Sum_probs=26.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.+.|.|++||||||+++.||..+|.+++..
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg~~~~d~ 33 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALGVPYLSS 33 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCCEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCceecc
Confidence 589999999999999999999999777643
No 205
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=96.74 E-value=0.00076 Score=68.25 Aligned_cols=68 Identities=12% Similarity=0.135 Sum_probs=39.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC----CCeEEEeC-CCCCCC----------chhHHHHHHHHHHHHHhcCCCcEEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG----LDYALMTG-GDVAPL----------GPQAVTKIHQLFDWAKKSKRGLLLFI 333 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~----~~~~~v~~-~~~~~~----------~~~~~~~l~~lf~~a~~~~~~~vl~l 333 (512)
..++|+||+|+||||+.++++..+. ..++.+.. .++... .+.....+...+..+.... |.+|++
T Consensus 124 g~i~I~GptGSGKTTlL~~l~g~~~~~~~~~i~t~ed~~e~~~~~~~~~v~q~~~~~~~~~~~~~La~aL~~~-Pdvill 202 (356)
T 3jvv_A 124 GLVLVTGPTGSGKSTTLAAMLDYLNNTKYHHILTIEDPIEFVHESKKCLVNQREVHRDTLGFSEALRSALRED-PDIILV 202 (356)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHHCCCEEEEEESSCCSCCCCSSSEEEEEEBTTTBSCHHHHHHHHTTSC-CSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcccCCCCcEEEEccCcHHhhhhccccceeeeeeccccCCHHHHHHHHhhhC-cCEEec
Confidence 4699999999999999999987753 22332221 111000 0000011223444555555 889999
Q ss_pred ccch
Q 010366 334 DEAD 337 (512)
Q Consensus 334 DEid 337 (512)
||+-
T Consensus 203 DEp~ 206 (356)
T 3jvv_A 203 GEMR 206 (356)
T ss_dssp SCCC
T ss_pred CCCC
Confidence 9995
No 206
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=96.74 E-value=0.00076 Score=62.26 Aligned_cols=28 Identities=25% Similarity=0.237 Sum_probs=24.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.+.|+||+||||||+++.|+. +|.+++.
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg~~~id 31 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LGVPLVD 31 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TTCCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcccc
Confidence 488999999999999999998 7777653
No 207
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=96.74 E-value=0.0054 Score=59.96 Aligned_cols=32 Identities=22% Similarity=0.269 Sum_probs=25.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~ 300 (512)
.-++|.||||+|||+|++.+|..+ |.++++++
T Consensus 36 ~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~ 71 (296)
T 1cr0_A 36 EVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAM 71 (296)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEe
Confidence 358899999999999999998764 43565554
No 208
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=96.74 E-value=0.00097 Score=63.29 Aligned_cols=29 Identities=41% Similarity=0.601 Sum_probs=25.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
..+.|.|||||||||+++.||..++.+++
T Consensus 10 ~~i~i~G~~GsGKsTla~~la~~lg~~~~ 38 (233)
T 3r20_A 10 LVVAVDGPAGTGKSSVSRGLARALGARYL 38 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCcc
Confidence 36999999999999999999999987654
No 209
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=96.73 E-value=0.001 Score=63.33 Aligned_cols=30 Identities=30% Similarity=0.617 Sum_probs=26.0
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
+..+.|.||||+||||+++.|+..+|....
T Consensus 27 ~~~i~l~G~~GsGKSTl~k~La~~lg~~~~ 56 (246)
T 2bbw_A 27 LLRAVILGPPGSGKGTVCQRIAQNFGLQHL 56 (246)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHHHCCCCE
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhCCeEe
Confidence 357999999999999999999999886544
No 210
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=96.71 E-value=0.001 Score=63.96 Aligned_cols=31 Identities=32% Similarity=0.489 Sum_probs=27.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..+.|.||||+||||+++.||..++.+++..
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~~~d~ 79 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYTFFDC 79 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEH
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCcEEeC
Confidence 3699999999999999999999999877753
No 211
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=96.70 E-value=0.00088 Score=61.73 Aligned_cols=27 Identities=30% Similarity=0.283 Sum_probs=24.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
..++|.|+|||||||+++.|+..++..
T Consensus 5 ~~I~i~G~~GsGKsT~~~~L~~~l~~~ 31 (213)
T 2plr_A 5 VLIAFEGIDGSGKSSQATLLKDWIELK 31 (213)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHTTT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhhc
Confidence 358999999999999999999998763
No 212
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=96.70 E-value=0.0047 Score=61.33 Aligned_cols=23 Identities=26% Similarity=0.254 Sum_probs=20.6
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|+||||+|||++|..+|..
T Consensus 99 ~i~~i~G~~gsGKT~la~~la~~ 121 (322)
T 2i1q_A 99 SVTEFAGVFGSGKTQIMHQSCVN 121 (322)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHH
Confidence 45899999999999999999875
No 213
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=96.69 E-value=0.00082 Score=61.84 Aligned_cols=30 Identities=27% Similarity=0.270 Sum_probs=26.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.+.|+|++||||||+++.|+..+|.+++..
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg~~vid~ 43 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYGAHVVNV 43 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCEEEEH
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCEEEEC
Confidence 488999999999999999999988777643
No 214
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=96.67 E-value=0.0027 Score=58.29 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=24.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v 299 (512)
.-.+++||+|+|||+.+-.++..+ +..+..+
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~ 42 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVF 42 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEE
Confidence 358889999999999888887765 5555544
No 215
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=96.66 E-value=0.001 Score=61.45 Aligned_cols=27 Identities=19% Similarity=0.383 Sum_probs=23.8
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
++..++|+||||+||||+++.|+..++
T Consensus 11 ~~~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 11 RIPPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCCCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred cCCEEEEECCCCCCHHHHHHHHHHhCc
Confidence 445699999999999999999999874
No 216
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=96.66 E-value=0.0052 Score=60.70 Aligned_cols=35 Identities=31% Similarity=0.406 Sum_probs=27.1
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++..++|+||+|+||||++..||..+ +..+..+++
T Consensus 103 ~~~vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~~ 140 (306)
T 1vma_A 103 PPFVIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAAA 140 (306)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEcc
Confidence 34578999999999999999998775 445555544
No 217
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=96.65 E-value=0.0088 Score=58.78 Aligned_cols=37 Identities=27% Similarity=0.410 Sum_probs=28.6
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGD 303 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~ 303 (512)
++..++|+||+|+||||++..||..+ |..+..+++..
T Consensus 104 ~g~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~~D~ 144 (296)
T 2px0_A 104 HSKYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFITTDT 144 (296)
T ss_dssp CSSEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEECCC
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEecCc
Confidence 34579999999999999999998664 44666666543
No 218
>3lxw_A GTPase IMAP family member 1; immunity, structural genomics consortium, SGC, immune system; HET: GDP; 2.21A {Homo sapiens} PDB: 3v70_A*
Probab=96.63 E-value=0.041 Score=52.28 Aligned_cols=23 Identities=22% Similarity=0.563 Sum_probs=20.2
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..|+|.|+||+|||+|+.+|...
T Consensus 22 l~I~lvG~~g~GKSSlin~l~~~ 44 (247)
T 3lxw_A 22 RRLILVGRTGAGKSATGNSILGQ 44 (247)
T ss_dssp EEEEEESSTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCcHHHHHHHHhCC
Confidence 46999999999999999998643
No 219
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=96.61 E-value=0.002 Score=64.43 Aligned_cols=68 Identities=12% Similarity=0.069 Sum_probs=42.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC--CCeEEEeCCCCCC---------CchhHHHHHHHHHHHHHhcCCCcEEEEccchh
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDVAP---------LGPQAVTKIHQLFDWAKKSKRGLLLFIDEADA 338 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~~~~~~~---------~~~~~~~~l~~lf~~a~~~~~~~vl~lDEid~ 338 (512)
.++|.||+|+||||++++++..+. ...+.+++..... +........+..+..+...+ |.+|++||.-.
T Consensus 173 ~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~~~e~~~~~~~~~i~~~~ggg~~~r~~la~aL~~~-p~ilildE~~~ 251 (330)
T 2pt7_A 173 NVIVCGGTGSGKTTYIKSIMEFIPKEERIISIEDTEEIVFKHHKNYTQLFFGGNITSADCLKSCLRMR-PDRIILGELRS 251 (330)
T ss_dssp CEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEESSCCCCCSSCSSEEEEECBTTBCHHHHHHHHTTSC-CSEEEECCCCS
T ss_pred EEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECCeeccccccchhEEEEEeCCChhHHHHHHHHhhhC-CCEEEEcCCCh
Confidence 599999999999999999998864 2345555432110 00001112233444454444 78999999864
No 220
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=96.59 E-value=0.0013 Score=63.04 Aligned_cols=38 Identities=11% Similarity=0.163 Sum_probs=30.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC--------eEEEeCCCCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD--------YALMTGGDVAP 306 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~--------~~~v~~~~~~~ 306 (512)
..|.|+|||||||||+|+.|+..++.+ +..++..++..
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~~~~d~~~~~~~~i~~D~~~~ 68 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQNEVDYRQKQVVILSQDSFYR 68 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTGGGSCGGGCSEEEEEGGGGBC
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhhhcccccCCceEEEecCcccc
Confidence 469999999999999999999998876 33566655543
No 221
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=96.59 E-value=0.0066 Score=63.40 Aligned_cols=33 Identities=21% Similarity=0.274 Sum_probs=26.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~ 301 (512)
.-++|.|+||+|||+++..+|... |.++.+++.
T Consensus 204 ~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~ 240 (454)
T 2r6a_A 204 DLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSL 240 (454)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEES
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 468999999999999999987653 557777764
No 222
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=96.58 E-value=0.0014 Score=64.67 Aligned_cols=33 Identities=24% Similarity=0.434 Sum_probs=27.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
.-++|.||+|||||++|..||..++..++..+.
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~~~iis~Ds 43 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILPVELISVDS 43 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSCEEEEECCT
T ss_pred cEEEEECCCccCHHHHHHHHHHhCCCcEEeccc
Confidence 468899999999999999999998866655543
No 223
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=96.58 E-value=0.0014 Score=62.80 Aligned_cols=29 Identities=24% Similarity=0.350 Sum_probs=26.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
..+.|.||+||||||+++.||..+|.+++
T Consensus 28 ~~I~I~G~~GsGKSTl~k~La~~Lg~~~~ 56 (252)
T 4e22_A 28 PVITVDGPSGAGKGTLCKALAESLNWRLL 56 (252)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHhcCCCcC
Confidence 46899999999999999999999987655
No 224
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=96.58 E-value=0.001 Score=66.46 Aligned_cols=33 Identities=24% Similarity=0.338 Sum_probs=28.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~ 301 (512)
+.++|.||+|||||+|+..||..++..++..+.
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~~eiIs~Ds 73 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFPLEVINSDK 73 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSCEEEEECCS
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCCCcEEcccc
Confidence 369999999999999999999999877665543
No 225
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=96.54 E-value=0.0014 Score=59.91 Aligned_cols=29 Identities=24% Similarity=0.143 Sum_probs=25.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
..+.|+|++||||||+++.|+.. |.+++.
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~-g~~~id 37 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW-GYPVLD 37 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT-TCCEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHC-CCEEEc
Confidence 46999999999999999999998 766653
No 226
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=96.50 E-value=0.006 Score=60.52 Aligned_cols=33 Identities=24% Similarity=0.141 Sum_probs=26.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
.-++|.|+||+|||+++..+|... +.++++++.
T Consensus 69 ~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~sl 104 (315)
T 3bh0_A 69 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 104 (315)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEEC
Confidence 358999999999999999998654 356666663
No 227
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=96.50 E-value=0.0016 Score=59.00 Aligned_cols=25 Identities=20% Similarity=0.446 Sum_probs=22.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.-+.|+||+|+||||+++.|+..+.
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~~ 30 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKHP 30 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 4589999999999999999998764
No 228
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=96.48 E-value=0.0054 Score=63.32 Aligned_cols=34 Identities=21% Similarity=0.287 Sum_probs=27.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
.-++|+|+||+||||+|+.|+..++..+ ++...+
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~~~~--i~~D~~ 292 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAGYVH--VNRDTL 292 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGTCEE--CCGGGS
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcCcEE--EccchH
Confidence 4688999999999999999999886544 444443
No 229
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=96.47 E-value=0.0015 Score=60.69 Aligned_cols=26 Identities=19% Similarity=0.328 Sum_probs=23.0
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+.-+.|+||+|+||||+++.|+..+.
T Consensus 8 g~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 8 GLLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred CcEEEEECcCCCCHHHHHHHHHhhCC
Confidence 34689999999999999999998875
No 230
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=96.47 E-value=0.0021 Score=58.81 Aligned_cols=26 Identities=27% Similarity=0.433 Sum_probs=22.5
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
.++|+||+|+|||++++.|.......
T Consensus 3 pIVi~GPSG~GK~Tl~~~L~~~~~~~ 28 (186)
T 1ex7_A 3 PIVISGPSGTGKSTLLKKLFAEYPDS 28 (186)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHCTTT
T ss_pred EEEEECCCCCCHHHHHHHHHHhCCCC
Confidence 49999999999999999998876433
No 231
>2ged_A SR-beta, signal recognition particle receptor beta subunit; protein transport, G protein, proline isomerization, circular permutation; 2.20A {Saccharomyces cerevisiae}
Probab=96.46 E-value=0.011 Score=53.21 Aligned_cols=24 Identities=25% Similarity=0.387 Sum_probs=21.3
Q ss_pred CcceEEecCCCCchHHHHHHHHHH
Q 010366 268 FRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
...+++.|++|+|||+++..+...
T Consensus 48 ~~~i~vvG~~g~GKSsll~~l~~~ 71 (193)
T 2ged_A 48 QPSIIIAGPQNSGKTSLLTLLTTD 71 (193)
T ss_dssp CCEEEEECCTTSSHHHHHHHHHHS
T ss_pred CCEEEEECCCCCCHHHHHHHHhcC
Confidence 347999999999999999999765
No 232
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=96.45 E-value=0.006 Score=56.79 Aligned_cols=125 Identities=20% Similarity=0.161 Sum_probs=67.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEEeCC--CCCCCchhHHHHHHHHHHHHHhcCCCcEEEEc---cchh--hhhh
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALMTGG--DVAPLGPQAVTKIHQLFDWAKKSKRGLLLFID---EADA--FLCE 342 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~--~~~~~~~~~~~~l~~lf~~a~~~~~~~vl~lD---Eid~--l~~~ 342 (512)
.+-|+|..||||||+++.++. +|.+++..+.- .+...++.....+...|... + ++ .+|. |..-
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~~vidaD~ia~~l~~~~~~~~~~i~~~fG~~-------~--~~~dg~ldR~~L~~~ 80 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGASLVDTDLIAHRITAPAGLAMPAIEQTFGPA-------F--VAADGSLDRARMRAL 80 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTCEEEEHHHHHHHHTSTTCTTHHHHHHHHCGG-------G--BCTTSSBCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCCcEEECcHHHHHHhcCCcHHHHHHHHHhChh-------h--cCCCCCCcHHHHHHH
Confidence 689999999999999999998 88887754421 11222333334444444211 1 11 1221 0000
Q ss_pred cccCCCCHHHHHHHH---------HHHHHcCCCCCCEEEEEeeCCCCCCC-HHHHccccceeecCCCCHHHHHHHHHH
Q 010366 343 RNKTYMSEAQRSALN---------ALLFRTGDQSKDIVLALATNRPGDLD-SAVADRIDEVLEFPLPGQEERFKLLKL 410 (512)
Q Consensus 343 ~~~~~~~~~~~~~l~---------~ll~~~~~~~~~viiI~ttN~~~~l~-~al~~R~~~~i~~~~p~~~er~~Il~~ 410 (512)
.-. .+.....|+ .+...+.....+++|+- .|-.+. ..+...||.++.+..|....+..+...
T Consensus 81 vF~---d~~~~~~L~~i~HP~I~~~~~~~~~~~~~~~vv~d---~pLL~E~~~~~~~~D~vi~V~ap~e~r~~Rl~~R 152 (210)
T 4i1u_A 81 IFS---DEDARRRLEAITHPLIRAETEREARDAQGPYVIFV---VPLLVESRNWKARCDRVLVVDCPVDTQIARVMQR 152 (210)
T ss_dssp HHH---CHHHHHHHHHHHHHHHHHHHHHHHHTCCSSSEEEE---CTTCTTCHHHHHHCSEEEEEECCHHHHHHHHHHH
T ss_pred HhC---CHHHHHHHHHHhhHHHHHHHHHHHHhcCCCEEEEE---EecccccCCccccCCeEEEEECCHHHHHHHHHhc
Confidence 000 112222222 22223322333444432 345566 777778999999999877766666643
No 233
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=96.43 E-value=0.0083 Score=62.18 Aligned_cols=35 Identities=40% Similarity=0.528 Sum_probs=28.2
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
+..++|+|+||+||||++..||..+ |..+..+++.
T Consensus 99 ~~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~~D 136 (432)
T 2v3c_C 99 QNVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIAAD 136 (432)
T ss_dssp CCCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEECCS
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEecc
Confidence 4579999999999999999998775 4566666654
No 234
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=96.43 E-value=0.0021 Score=60.81 Aligned_cols=30 Identities=27% Similarity=0.492 Sum_probs=26.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
..+.|.|++|||||++++.|+..+|.+++.
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg~~~~d 46 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFGFTYLD 46 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCCceec
Confidence 468999999999999999999999876653
No 235
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=96.41 E-value=0.0022 Score=59.68 Aligned_cols=31 Identities=26% Similarity=0.417 Sum_probs=27.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..+.|+|++|||||++++.|+..+|.+++..
T Consensus 4 ~~i~i~G~~gsGkst~~~~l~~~~g~~~~~~ 34 (219)
T 2h92_A 4 INIALDGPAAAGKSTIAKRVASELSMIYVDT 34 (219)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCceecC
Confidence 3599999999999999999999998776643
No 236
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=96.40 E-value=0.0097 Score=61.93 Aligned_cols=33 Identities=21% Similarity=0.293 Sum_probs=26.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~ 301 (512)
.-++|+|+||+|||+++..+|... +.++++++.
T Consensus 201 ~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~sl 237 (444)
T 2q6t_A 201 SLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSL 237 (444)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEC
Confidence 458999999999999999987653 567777764
No 237
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=96.39 E-value=0.011 Score=64.17 Aligned_cols=24 Identities=38% Similarity=0.498 Sum_probs=20.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+.++++||||||||+++..+...+
T Consensus 165 ~~~vi~G~pGTGKTt~l~~ll~~l 188 (608)
T 1w36_D 165 RISVISGGPGTGKTTTVAKLLAAL 188 (608)
T ss_dssp SEEEEECCTTSTHHHHHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHHHHHH
Confidence 369999999999999988876554
No 238
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=96.37 E-value=0.0021 Score=58.29 Aligned_cols=24 Identities=29% Similarity=0.556 Sum_probs=21.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.++|.||+|+||||+++.|+...+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~ 27 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLD 27 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccC
Confidence 478999999999999999998654
No 239
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=96.37 E-value=0.0048 Score=56.77 Aligned_cols=34 Identities=21% Similarity=0.223 Sum_probs=27.1
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
+..+.|+||+|+||||+++.|+..+ +.+++.++.
T Consensus 22 ~~~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~~~ 58 (201)
T 1rz3_A 22 RLVLGIDGLSRSGKTTLANQLSQTLREQGISVCVFHM 58 (201)
T ss_dssp SEEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEEG
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEecc
Confidence 3468999999999999999999876 555655543
No 240
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=96.36 E-value=0.0021 Score=58.20 Aligned_cols=34 Identities=26% Similarity=0.278 Sum_probs=26.7
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC---CCeEEEe
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG---LDYALMT 300 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~ 300 (512)
++..++|.|+||+||||+++.|+..++ .++..++
T Consensus 12 ~~~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~~ 48 (186)
T 2yvu_A 12 KGIVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVLD 48 (186)
T ss_dssp CCEEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEee
Confidence 335689999999999999999998874 4455554
No 241
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=96.36 E-value=0.0021 Score=59.79 Aligned_cols=30 Identities=23% Similarity=0.300 Sum_probs=25.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..+.|.|++||||||+++.|+. +|.+++..
T Consensus 5 ~~I~i~G~~GSGKST~~~~L~~-lg~~~id~ 34 (218)
T 1vht_A 5 YIVALTGGIGSGKSTVANAFAD-LGINVIDA 34 (218)
T ss_dssp EEEEEECCTTSCHHHHHHHHHH-TTCEEEEH
T ss_pred eEEEEECCCCCCHHHHHHHHHH-cCCEEEEc
Confidence 3589999999999999999998 77665543
No 242
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=96.36 E-value=0.0025 Score=64.81 Aligned_cols=26 Identities=23% Similarity=0.411 Sum_probs=22.5
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+...++|+||+|+||||++++++..+
T Consensus 135 ~g~~i~ivG~~GsGKTTll~~l~~~~ 160 (372)
T 2ewv_A 135 KMGLILVTGPTGSGKSTTIASMIDYI 160 (372)
T ss_dssp SSEEEEEECSSSSSHHHHHHHHHHHH
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhc
Confidence 33469999999999999999998865
No 243
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=96.35 E-value=0.0018 Score=59.38 Aligned_cols=24 Identities=21% Similarity=0.458 Sum_probs=22.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|+||||+||||+++.|+..+
T Consensus 7 ~~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 7 LLIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp CEEEEECSTTSCHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999999876
No 244
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=96.33 E-value=0.0025 Score=59.14 Aligned_cols=33 Identities=21% Similarity=0.265 Sum_probs=27.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC----CCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG----LDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~----~~~~~v~~ 301 (512)
..++|.|+||+||||+++.|+..++ .+++.+++
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~~~~g~~~~~~~~ 62 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLVRDRRVHAYRLDG 62 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEECH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhccccCCcEEEECC
Confidence 4689999999999999999998764 55777763
No 245
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=96.31 E-value=0.0013 Score=60.65 Aligned_cols=29 Identities=21% Similarity=0.197 Sum_probs=24.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh-CCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS-GLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l-~~~~~ 297 (512)
..+.|+||||+||||+++.|+..+ +.+++
T Consensus 22 ~~i~i~G~~GsGKSTl~~~L~~~~~~~~~i 51 (207)
T 2qt1_A 22 FIIGISGVTNSGKTTLAKNLQKHLPNCSVI 51 (207)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTTSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCcEEE
Confidence 468899999999999999999876 44433
No 246
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=96.30 E-value=0.002 Score=64.53 Aligned_cols=30 Identities=27% Similarity=0.310 Sum_probs=25.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.++|.||+|+|||++|+.||..++..++..
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~~~iis~ 38 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFNGEIISG 38 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTTEEEEEC
T ss_pred eEEEECCCcCcHHHHHHHHHHHcCCceecc
Confidence 589999999999999999999988554443
No 247
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=96.26 E-value=0.0042 Score=57.46 Aligned_cols=27 Identities=26% Similarity=0.383 Sum_probs=23.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+...+.|.||+|+|||||++.|+..+.
T Consensus 21 ~g~~v~I~G~sGsGKSTl~~~l~~~~~ 47 (208)
T 3c8u_A 21 GRQLVALSGAPGSGKSTLSNPLAAALS 47 (208)
T ss_dssp SCEEEEEECCTTSCTHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 334688999999999999999998875
No 248
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=96.26 E-value=0.0019 Score=63.77 Aligned_cols=29 Identities=24% Similarity=0.290 Sum_probs=24.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
-++|.||+|||||+++..||..++..++.
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~~~iis 33 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLNGEVIS 33 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTTEEEEE
T ss_pred EEEEECCCcCCHHHHHHHHHHhCccceee
Confidence 58899999999999999999988754443
No 249
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=96.23 E-value=0.012 Score=62.53 Aligned_cols=32 Identities=22% Similarity=0.408 Sum_probs=26.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC---CCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG---LDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~ 300 (512)
..|+|+|+||+||||+|+.||..++ .+...++
T Consensus 36 ~lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 36 TVIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 3589999999999999999999884 4444444
No 250
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=96.23 E-value=0.0027 Score=58.21 Aligned_cols=25 Identities=28% Similarity=0.478 Sum_probs=22.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.-+.|.||+|+||||+++.|+..+.
T Consensus 8 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 32 (205)
T 3tr0_A 8 NLFIISAPSGAGKTSLVRALVKALA 32 (205)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSS
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998853
No 251
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=96.22 E-value=0.0024 Score=65.20 Aligned_cols=31 Identities=23% Similarity=0.294 Sum_probs=26.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.-++|.||+|+|||+++..||..++..++..
T Consensus 3 ~~i~i~GptgsGKttla~~La~~~~~~iis~ 33 (409)
T 3eph_A 3 KVIVIAGTTGVGKSQLSIQLAQKFNGEVINS 33 (409)
T ss_dssp EEEEEEECSSSSHHHHHHHHHHHHTEEEEEC
T ss_pred cEEEEECcchhhHHHHHHHHHHHCCCeEeec
Confidence 4688999999999999999999988655443
No 252
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=96.22 E-value=0.0025 Score=64.10 Aligned_cols=30 Identities=30% Similarity=0.516 Sum_probs=26.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.+++|+||||+|||+++++||..++.+|+.
T Consensus 25 ~~i~l~G~~G~GKTTl~~~la~~l~~~f~~ 54 (359)
T 2ga8_A 25 VCVILVGSPGSGKSTIAEELCQIINEKYHT 54 (359)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCcHHHHHHHHHHHhCCCeee
Confidence 369999999999999999999999877744
No 253
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=96.21 E-value=0.0029 Score=58.49 Aligned_cols=29 Identities=17% Similarity=0.190 Sum_probs=27.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.|.|.||+|||||++++.||..+|.+|+-
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~D 36 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLYS 36 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEEC
Confidence 58999999999999999999999999883
No 254
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=96.21 E-value=0.0029 Score=61.70 Aligned_cols=30 Identities=23% Similarity=0.216 Sum_probs=25.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
..|.|+|+|||||||+|+.|+ .+|.+++..
T Consensus 76 ~iI~I~G~~GSGKSTva~~La-~lg~~~id~ 105 (281)
T 2f6r_A 76 YVLGLTGISGSGKSSVAQRLK-NLGAYIIDS 105 (281)
T ss_dssp EEEEEEECTTSCHHHHHHHHH-HHTCEEEEH
T ss_pred EEEEEECCCCCCHHHHHHHHH-HCCCcEEeh
Confidence 468999999999999999999 577765543
No 255
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=96.20 E-value=0.0061 Score=55.29 Aligned_cols=33 Identities=18% Similarity=0.284 Sum_probs=29.0
Q ss_pred eEEecCCCCchHHHHHHHHHHhCCCeEEEeCCCC
Q 010366 271 MLFYGPPGTGKTMAARELARKSGLDYALMTGGDV 304 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~~~~~~v~~~~~ 304 (512)
+|++|++|+|||++|..++.. +.+.+++..+..
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~ 34 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQI 34 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCC
Confidence 789999999999999999988 888888877553
No 256
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=96.20 E-value=0.0023 Score=59.14 Aligned_cols=34 Identities=32% Similarity=0.290 Sum_probs=26.2
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
++..+.|.||+|+||||+++.|+..++..+.+++
T Consensus 5 ~~~~i~i~G~~GsGKSTl~~~l~~~~~~~i~~v~ 38 (211)
T 3asz_A 5 KPFVIGIAGGTASGKTTLAQALARTLGERVALLP 38 (211)
T ss_dssp CCEEEEEEESTTSSHHHHHHHHHHHHGGGEEEEE
T ss_pred CcEEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 3346889999999999999999998772233333
No 257
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=96.17 E-value=0.0024 Score=62.59 Aligned_cols=29 Identities=38% Similarity=0.561 Sum_probs=23.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHh-CCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS-GLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l-~~~~~ 297 (512)
..++|.||||+||||+++.|+..+ +.+++
T Consensus 3 ~~I~l~G~~GsGKST~a~~L~~~~~~~~~i 32 (301)
T 1ltq_A 3 KIILTIGCPGSGKSTWAREFIAKNPGFYNI 32 (301)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHSTTEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHhCCCcEEe
Confidence 358999999999999999999864 54433
No 258
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=96.16 E-value=0.0042 Score=57.27 Aligned_cols=25 Identities=16% Similarity=0.468 Sum_probs=22.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+-+.|+||+|+|||+|++.|+....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4689999999999999999998764
No 259
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=96.16 E-value=0.0027 Score=58.40 Aligned_cols=25 Identities=28% Similarity=0.612 Sum_probs=22.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|+||+|+||||+++.|+..+.
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~~ 29 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEHS 29 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCc
Confidence 4699999999999999999998763
No 260
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=96.15 E-value=0.0028 Score=57.53 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=21.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+.|.||+|+||||+++.|+..+.
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~~ 26 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEYP 26 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHCG
T ss_pred EEEEECCCCCCHHHHHHHHHhhCC
Confidence 488999999999999999998764
No 261
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=96.10 E-value=0.017 Score=59.83 Aligned_cols=38 Identities=21% Similarity=0.253 Sum_probs=30.7
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh----CCCeEEEeCCCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS----GLDYALMTGGDV 304 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~~~~ 304 (512)
+++.++++|++|+||||++-.||..+ |..+..+++...
T Consensus 99 ~~~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd~D~~ 140 (433)
T 2xxa_A 99 PPAVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVSADVY 140 (433)
T ss_dssp SSEEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEECCCS
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEecCCC
Confidence 45689999999999999999998665 677777777543
No 262
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=96.09 E-value=0.11 Score=47.85 Aligned_cols=23 Identities=22% Similarity=0.193 Sum_probs=18.0
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
+++++.+|+|+|||..+-..+-.
T Consensus 52 ~~~li~~~TGsGKT~~~~~~~~~ 74 (220)
T 1t6n_A 52 MDVLCQAKSGMGKTAVFVLATLQ 74 (220)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHH
T ss_pred CCEEEECCCCCchhhhhhHHHHH
Confidence 36999999999999876555433
No 263
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=96.07 E-value=0.017 Score=56.78 Aligned_cols=35 Identities=31% Similarity=0.382 Sum_probs=27.7
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS---GLDYALMTGG 302 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~ 302 (512)
+..+++.||+|+||||++..+|..+ +..+..+++.
T Consensus 98 ~~vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~D 135 (297)
T 1j8m_F 98 PYVIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGAD 135 (297)
T ss_dssp SEEEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEECC
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEecC
Confidence 3568889999999999999998775 5666666654
No 264
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=96.04 E-value=0.0026 Score=58.53 Aligned_cols=25 Identities=32% Similarity=0.492 Sum_probs=22.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++|.||||+|||++|..|+....
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4699999999999999999998865
No 265
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=96.02 E-value=0.022 Score=56.63 Aligned_cols=35 Identities=23% Similarity=0.369 Sum_probs=27.0
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++..++|+||+|+||||++..||..+ +..+..+++
T Consensus 104 ~~~vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid~ 141 (320)
T 1zu4_A 104 RLNIFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAAA 141 (320)
T ss_dssp SCEEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeC
Confidence 44579999999999999999998765 445555443
No 266
>3def_A T7I23.11 protein; chloroplast, TOC33, GTPase, hydrolase; HET: GDP; 1.96A {Arabidopsis thaliana} PDB: 3bb3_A* 3bb4_A* 2j3e_A*
Probab=96.01 E-value=0.015 Score=55.91 Aligned_cols=25 Identities=24% Similarity=0.352 Sum_probs=21.5
Q ss_pred CCcceEEecCCCCchHHHHHHHHHH
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
....++|.|++|+|||+|+.++...
T Consensus 35 ~~~~I~lvG~~g~GKSSLin~l~~~ 59 (262)
T 3def_A 35 NSMTVLVLGKGGVGKSSTVNSLIGE 59 (262)
T ss_dssp CEEEEEEEECTTSSHHHHHHHHHTS
T ss_pred CCcEEEEECCCCCCHHHHHHHHhCC
Confidence 3357999999999999999999754
No 267
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=96.00 E-value=0.013 Score=54.49 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=23.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~ 300 (512)
-.+++||.|+|||+.+-.++... +..++.+.
T Consensus 30 l~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k 63 (214)
T 2j9r_A 30 IEVICGSMFSGKSEELIRRVRRTQFAKQHAIVFK 63 (214)
T ss_dssp EEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEE
Confidence 36789999999999888876654 56666665
No 268
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=95.98 E-value=0.0098 Score=59.51 Aligned_cols=33 Identities=15% Similarity=0.155 Sum_probs=26.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 47 ~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSl 82 (338)
T 4a1f_A 47 SLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSL 82 (338)
T ss_dssp CEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEES
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeC
Confidence 458999999999999999997663 566666653
No 269
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=95.95 E-value=0.02 Score=60.43 Aligned_cols=33 Identities=15% Similarity=0.071 Sum_probs=26.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHh----CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS----GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l----~~~~~~v~~ 301 (512)
.-++|.|+||+|||+++..+|... +.++.+++.
T Consensus 243 ~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~ 279 (503)
T 1q57_A 243 EVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAML 279 (503)
T ss_dssp CEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEES
T ss_pred eEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEec
Confidence 458899999999999999998764 456777764
No 270
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=95.93 E-value=0.02 Score=60.45 Aligned_cols=35 Identities=29% Similarity=0.422 Sum_probs=27.7
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++..|+|+|+||+||||++..||..+ |..+..+++
T Consensus 100 ~~~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 100 KQNVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp --EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 34579999999999999999998765 566666665
No 271
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=95.87 E-value=0.036 Score=52.08 Aligned_cols=20 Identities=25% Similarity=0.479 Sum_probs=16.6
Q ss_pred cceEEecCCCCchHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAREL 288 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~al 288 (512)
..+++.||+|||||++...+
T Consensus 77 ~~~~i~g~TGsGKTt~~~~~ 96 (235)
T 3llm_A 77 SVVIIRGATGCGKTTQVPQF 96 (235)
T ss_dssp SEEEEECCTTSSHHHHHHHH
T ss_pred CEEEEEeCCCCCcHHhHHHH
Confidence 36999999999999866554
No 272
>3thx_A DNA mismatch repair protein MSH2; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 2o8c_A* 2o8d_A* 2o8f_A* 3thw_A* 2o8b_A* 3thy_A* 3thz_A* 2o8e_A*
Probab=95.86 E-value=0.03 Score=63.48 Aligned_cols=20 Identities=25% Similarity=0.326 Sum_probs=18.4
Q ss_pred ceEEecCCCCchHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA 289 (512)
-++|+||.|+||||+.+.+|
T Consensus 664 i~~ItGpNGsGKSTlLr~ia 683 (934)
T 3thx_A 664 FHIITGPNMGGKSTYIRQTG 683 (934)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 48999999999999999984
No 273
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=95.85 E-value=0.039 Score=51.89 Aligned_cols=67 Identities=16% Similarity=0.144 Sum_probs=36.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCCCCchhHHHH------------HHHHHHHHHhcCCCcEEEEc
Q 010366 270 NMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVAPLGPQAVTK------------IHQLFDWAKKSKRGLLLFID 334 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~~~~~~~~~~------------l~~lf~~a~~~~~~~vl~lD 334 (512)
-.++|||.|+|||+.+-..+... |..++.+....-..++...... ...++..+ .++.+|+||
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D~Ryg~~i~sr~G~~~~a~~i~~~~di~~~~---~~~dvViID 97 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKDTRYSSSFCTHDRNTMEALPACLLRDVAQEA---LGVAVIGID 97 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTCCCC-----------CEEEEESSGGGGHHHH---TTCSEEEES
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCCccchHHHHhhcCCeeEEEecCCHHHHHHHh---ccCCEEEEE
Confidence 47889999999997666555443 4555555422111111110111 01233333 347899999
Q ss_pred cchhh
Q 010366 335 EADAF 339 (512)
Q Consensus 335 Eid~l 339 (512)
|+..+
T Consensus 98 EaQF~ 102 (234)
T 2orv_A 98 EGQFF 102 (234)
T ss_dssp SGGGC
T ss_pred chhhh
Confidence 99986
No 274
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=95.84 E-value=0.028 Score=58.51 Aligned_cols=33 Identities=24% Similarity=0.141 Sum_probs=26.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
.-++|.|+||+|||+++..+|... |.++.+++.
T Consensus 198 ~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSl 233 (444)
T 3bgw_A 198 NFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSL 233 (444)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECS
T ss_pred cEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEEC
Confidence 468999999999999999887654 567777664
No 275
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=95.82 E-value=0.0069 Score=65.50 Aligned_cols=35 Identities=23% Similarity=0.293 Sum_probs=30.5
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
.+..|+|+|+||+||||+|+.|+..+ |.+++.+++
T Consensus 51 ~g~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~lDg 88 (630)
T 1x6v_B 51 RGCTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTLDG 88 (630)
T ss_dssp CCEEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEESH
T ss_pred CCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEech
Confidence 33569999999999999999999998 889888763
No 276
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=95.81 E-value=0.011 Score=57.93 Aligned_cols=27 Identities=22% Similarity=0.363 Sum_probs=23.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
++.-+.|.||+|+||||+++.|+..++
T Consensus 30 ~~~ii~I~G~sGsGKSTla~~L~~~l~ 56 (290)
T 1odf_A 30 CPLFIFFSGPQGSGKSFTSIQIYNHLM 56 (290)
T ss_dssp SCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHhh
Confidence 345688999999999999999998875
No 277
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=95.79 E-value=0.041 Score=55.38 Aligned_cols=32 Identities=28% Similarity=0.429 Sum_probs=25.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~ 300 (512)
..+.|+|+||+|||+++..|+..+ |..+..++
T Consensus 80 ~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 80 HRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 479999999999999999998775 44544444
No 278
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=95.72 E-value=0.006 Score=57.04 Aligned_cols=24 Identities=25% Similarity=0.488 Sum_probs=21.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+||||+++.|+...
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~ 47 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEF 47 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHS
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 358999999999999999999876
No 279
>3thx_B DNA mismatch repair protein MSH3; ABC family ATPase, mismatch recognition, mismatched unpaired DNA binding protein-DNA complex; HET: DNA ADP; 2.70A {Homo sapiens} PDB: 3thw_B* 3thy_B* 3thz_B*
Probab=95.71 E-value=0.027 Score=63.68 Aligned_cols=22 Identities=32% Similarity=0.466 Sum_probs=19.5
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
..++|+||.|+||||+.+.++.
T Consensus 674 ~i~~ItGPNGaGKSTlLr~i~~ 695 (918)
T 3thx_B 674 RVMIITGPNMGGKSSYIKQVAL 695 (918)
T ss_dssp CEEEEESCCCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCchHHHHHHHHH
Confidence 3589999999999999999864
No 280
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=95.71 E-value=0.0072 Score=57.05 Aligned_cols=30 Identities=27% Similarity=0.479 Sum_probs=26.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYALM 299 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~v 299 (512)
.+-|.||||+||||+|+.|+..++.+++..
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~~is~ 39 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIPQIST 39 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCCEECH
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCCeeec
Confidence 478999999999999999999998877644
No 281
>1h65_A Chloroplast outer envelope protein OEP34; GTPase, translocon; HET: GDP; 2.0A {Pisum sativum} SCOP: c.37.1.8 PDB: 3bb1_A*
Probab=95.70 E-value=0.019 Score=55.27 Aligned_cols=26 Identities=19% Similarity=0.327 Sum_probs=21.8
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHH
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+...+++.|++|+|||+|+.++...
T Consensus 37 ~~~~~I~vvG~~g~GKSSLin~l~~~ 62 (270)
T 1h65_A 37 VNSLTILVMGKGGVGKSSTVNSIIGE 62 (270)
T ss_dssp CCEEEEEEEESTTSSHHHHHHHHHTS
T ss_pred CCCeEEEEECCCCCCHHHHHHHHhCC
Confidence 33457999999999999999999754
No 282
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=95.69 E-value=0.071 Score=55.85 Aligned_cols=25 Identities=36% Similarity=0.398 Sum_probs=22.2
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+..++|.||+|+||||+++.|+..+
T Consensus 293 GeVI~LVGpNGSGKTTLl~~LAgll 317 (503)
T 2yhs_A 293 PFVILMVGVNGVGKTTTIGKLARQF 317 (503)
T ss_dssp TEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEEECCCcccHHHHHHHHHHHh
Confidence 3468899999999999999999875
No 283
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=95.65 E-value=0.005 Score=65.30 Aligned_cols=68 Identities=10% Similarity=0.105 Sum_probs=41.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC--CCeEEEeCCC-CCCCc------------hhHHHHHHHHHHHHHhcCCCcEEEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGD-VAPLG------------PQAVTKIHQLFDWAKKSKRGLLLFI 333 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~~~~-~~~~~------------~~~~~~l~~lf~~a~~~~~~~vl~l 333 (512)
.+++|+||+|+||||++++++..+. ...+.+.+.. +.... ....-.+..++..+.+.. |.++++
T Consensus 261 ~~i~I~GptGSGKTTlL~aL~~~i~~~~giitied~~E~~~~~~~~v~~~~r~~~~~~~~~~~~~l~~~LR~~-PD~iiv 339 (511)
T 2oap_1 261 FSAIVVGETASGKTTTLNAIMMFIPPDAKVVSIEDTREIKLYHENWIAEVTRTGMGEGEIDMYDLLRAALRQR-PDYIIV 339 (511)
T ss_dssp CCEEEEESTTSSHHHHHHHHGGGSCTTCCEEEEESSCCCCCCCSSEEEEECBCCSSSCCBCHHHHHHTTGGGC-CSEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCCCCEEEEcCcccccCCCCCeEEEEeecccccCCcCHHHHHHHhhccC-CCeEEe
Confidence 3699999999999999999998874 3355554432 11000 000001223344444544 789999
Q ss_pred ccch
Q 010366 334 DEAD 337 (512)
Q Consensus 334 DEid 337 (512)
+|+-
T Consensus 340 gEir 343 (511)
T 2oap_1 340 GEVR 343 (511)
T ss_dssp SCCC
T ss_pred CCcC
Confidence 9985
No 284
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=95.63 E-value=0.0055 Score=54.86 Aligned_cols=20 Identities=25% Similarity=0.497 Sum_probs=17.5
Q ss_pred cceEEecCCCCchHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAREL 288 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~al 288 (512)
.-+.|+||+|+||||+++.+
T Consensus 10 ei~~l~G~nGsGKSTl~~~~ 29 (171)
T 4gp7_A 10 SLVVLIGSSGSGKSTFAKKH 29 (171)
T ss_dssp EEEEEECCTTSCHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHH
Confidence 35889999999999999953
No 285
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=95.61 E-value=0.026 Score=52.24 Aligned_cols=16 Identities=38% Similarity=0.493 Sum_probs=14.5
Q ss_pred cceEEecCCCCchHHH
Q 010366 269 RNMLFYGPPGTGKTMA 284 (512)
Q Consensus 269 ~~vLL~GppGtGKT~l 284 (512)
+++++.+|+|+|||..
T Consensus 52 ~~~lv~~pTGsGKT~~ 67 (224)
T 1qde_A 52 HDVLAQAQSGTGKTGT 67 (224)
T ss_dssp CCEEEECCTTSSHHHH
T ss_pred CCEEEECCCCCcHHHH
Confidence 4699999999999987
No 286
>3lxx_A GTPase IMAP family member 4; structural genomics consortium, SGC, coiled coil, GTP- binding, nucleotide-binding, immune system; HET: GDP; 2.15A {Homo sapiens}
Probab=95.61 E-value=0.021 Score=53.73 Aligned_cols=23 Identities=17% Similarity=0.466 Sum_probs=20.5
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..|+|.|++|+|||+|+.+|...
T Consensus 30 ~~i~lvG~~g~GKStlin~l~g~ 52 (239)
T 3lxx_A 30 LRIVLVGKTGAGKSATGNSILGR 52 (239)
T ss_dssp EEEEEECCTTSSHHHHHHHHHTS
T ss_pred eEEEEECCCCCCHHHHHHHHcCC
Confidence 47999999999999999999754
No 287
>1kao_A RAP2A; GTP-binding protein, small G protein, GDP, RAS; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2rap_A* 3rap_R*
Probab=95.59 E-value=0.096 Score=45.16 Aligned_cols=22 Identities=18% Similarity=0.407 Sum_probs=20.0
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 5 ~i~v~G~~~~GKSsli~~l~~~ 26 (167)
T 1kao_A 5 KVVVLGSGGVGKSALTVQFVTG 26 (167)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 288
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=95.58 E-value=0.003 Score=58.28 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
-+.|.||+|+||||+++.|+..++
T Consensus 2 ~I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 2 LIAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHH
Confidence 378999999999999999999875
No 289
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=95.58 E-value=0.0041 Score=61.02 Aligned_cols=36 Identities=11% Similarity=0.203 Sum_probs=26.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC---CCeEEEeCCCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG---LDYALMTGGDVA 305 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~~~~~~ 305 (512)
-+.|+||+|+||||+|+.|+..++ ..+..++..++.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~~D~~~ 45 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIEGDAFH 45 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEEGGGGB
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEeecchhh
Confidence 588999999999999999998775 446666666654
No 290
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=95.57 E-value=0.0072 Score=56.65 Aligned_cols=25 Identities=20% Similarity=0.360 Sum_probs=22.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.-+.|.||+|+|||||.+.|+....
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~~ 41 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQP 41 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCCCCHHHHHHHHhccCC
Confidence 4588999999999999999998764
No 291
>1bif_A 6-phosphofructo-2-kinase/ fructose-2,6-bisphospha; transferase (phospho), phosphatase, hydrolase (phosp glycolysis, bifunctional enzyme; HET: AGS; 2.00A {Rattus norvegicus} SCOP: c.37.1.7 c.60.1.4 PDB: 3bif_A* 2bif_A* 1k6m_A* 1c80_A* 1c7z_A* 1c81_A* 1tip_A* 1fbt_A
Probab=95.56 E-value=0.021 Score=59.75 Aligned_cols=25 Identities=28% Similarity=0.476 Sum_probs=22.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++|+|.||+|||++++.|+..++
T Consensus 40 ~~IvlvGlpGsGKSTia~~La~~l~ 64 (469)
T 1bif_A 40 TLIVMVGLPARGKTYISKKLTRYLN 64 (469)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4699999999999999999999875
No 292
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=95.55 E-value=0.0076 Score=55.66 Aligned_cols=25 Identities=28% Similarity=0.491 Sum_probs=22.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.||+|+||||+++.|+..+.
T Consensus 21 ei~~l~GpnGsGKSTLl~~l~gl~~ 45 (207)
T 1znw_A 21 RVVVLSGPSAVGKSTVVRCLRERIP 45 (207)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHST
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCC
Confidence 3588999999999999999998874
No 293
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=95.55 E-value=0.0079 Score=53.36 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=22.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||.|+|||||++.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 358899999999999999999987
No 294
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=95.55 E-value=0.0072 Score=56.84 Aligned_cols=29 Identities=17% Similarity=0.313 Sum_probs=26.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCeEE
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDYAL 298 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~~~ 298 (512)
.+.|.|++|||||++++.||..+|.+++.
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~~d 44 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHFYD 44 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEEEC
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcEEc
Confidence 58899999999999999999999988863
No 295
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=95.54 E-value=0.042 Score=53.83 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=26.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++..+.++||+|+||||++..+|..+ +..+..+++
T Consensus 97 ~~~~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~~ 134 (295)
T 1ls1_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (295)
T ss_dssp SSEEEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEecC
Confidence 34568889999999999999998765 445554443
No 296
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=95.50 E-value=0.037 Score=54.46 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.7
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
++..+.|.||+|+||||+++.||..+
T Consensus 99 ~g~vi~lvG~nGsGKTTll~~Lag~l 124 (302)
T 3b9q_A 99 KPAVIMIVGVNGGGKTTSLGKLAHRL 124 (302)
T ss_dssp SCEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCcEEEEEcCCCCCHHHHHHHHHHHH
Confidence 34568899999999999999999875
No 297
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=95.47 E-value=0.033 Score=50.81 Aligned_cols=18 Identities=39% Similarity=0.431 Sum_probs=15.2
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (206)
T 1vec_A 41 RDILARAKNGTGKSGAYL 58 (206)
T ss_dssp CCEEEECCSSSTTHHHHH
T ss_pred CCEEEECCCCCchHHHHH
Confidence 469999999999997544
No 298
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=95.46 E-value=0.0087 Score=56.44 Aligned_cols=30 Identities=30% Similarity=0.463 Sum_probs=25.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC--CCeEE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG--LDYAL 298 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~--~~~~~ 298 (512)
.-+.|.||||+||||+++.|+..++ .+++.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~~~~~~~~ 58 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLVKDYDVIM 58 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHTTTSCEEE
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHhcCCCcee
Confidence 3588999999999999999999986 34443
No 299
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=95.43 E-value=0.045 Score=56.41 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=27.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
++..++|+||+|+||||++..||..+ +..+..+++
T Consensus 97 ~~~vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd~ 134 (425)
T 2ffh_A 97 DRNLWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVAA 134 (425)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEEC
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEeec
Confidence 44578899999999999999998776 445555554
No 300
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=95.43 E-value=0.0091 Score=56.73 Aligned_cols=27 Identities=15% Similarity=0.194 Sum_probs=23.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
.-+-|.||+|+||||+++.|+..+|..
T Consensus 26 ~iigI~G~~GsGKSTl~k~L~~~lG~~ 52 (245)
T 2jeo_A 26 FLIGVSGGTASGKSTVCEKIMELLGQN 52 (245)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHTGG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhchh
Confidence 358899999999999999999988743
No 301
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=95.37 E-value=0.048 Score=57.89 Aligned_cols=103 Identities=14% Similarity=0.106 Sum_probs=56.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeCCCCC----------CCc-------------------hhHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTGGDVA----------PLG-------------------PQAVTKIH 316 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~~~~~----------~~~-------------------~~~~~~l~ 316 (512)
..++|.||||+|||+|++.++... |.+.+++...+.. ... ....+..+
T Consensus 282 ~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~~~~l~~~~~~~g~~~~~~~~~g~~~~~~~~p~~LS~g~~q~ 361 (525)
T 1tf7_A 282 SIILATGATGTGKTLLVSRFVENACANKERAILFAYEESRAQLLRNAYSWGMDFEEMERQNLLKIVCAYPESAGLEDHLQ 361 (525)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSCHHHHHHHHHTTSCCHHHHHHTTSEEECCCCGGGSCHHHHHH
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCCHHHHHHHHHHcCCCHHHHHhCCCEEEEEeccccCCHHHHHH
Confidence 358899999999999999998654 3445555432210 000 01222333
Q ss_pred HHHHHHHhcCCCcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCC
Q 010366 317 QLFDWAKKSKRGLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNR 378 (512)
Q Consensus 317 ~lf~~a~~~~~~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~ 378 (512)
.++..+... .|.+|+||=+..|-.... ....+..+..++..+... ++.+|+++..
T Consensus 362 ~~~a~~l~~-~p~llilDp~~~Ld~~~~----~~~~~~~i~~ll~~l~~~--g~tvilvsh~ 416 (525)
T 1tf7_A 362 IIKSEINDF-KPARIAIDSLSALARGVS----NNAFRQFVIGVTGYAKQE--EITGLFTNTS 416 (525)
T ss_dssp HHHHHHHTT-CCSEEEEECHHHHTSSSC----HHHHHHHHHHHHHHHHHT--TCEEEEEEEC
T ss_pred HHHHHHHhh-CCCEEEEcChHHHHhhCC----hHHHHHHHHHHHHHHHhC--CCEEEEEECc
Confidence 344444433 478999996655532210 122555666666665322 3444444433
No 302
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=95.34 E-value=0.019 Score=56.96 Aligned_cols=25 Identities=20% Similarity=0.167 Sum_probs=22.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.-+.|.||+||||||+++.|+..++
T Consensus 93 ~iigI~GpsGSGKSTl~~~L~~ll~ 117 (321)
T 3tqc_A 93 YIIGIAGSVAVGKSTTSRVLKALLS 117 (321)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4688999999999999999998875
No 303
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=95.32 E-value=0.02 Score=58.95 Aligned_cols=49 Identities=18% Similarity=0.282 Sum_probs=33.9
Q ss_pred CCCCccccChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 236 NGFGDVILHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 236 ~~~~~vvg~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++++-..+.....+..++ ..+...++|+||+|+||||+.++++..+.
T Consensus 144 ~~l~~Lg~~~~~~~~L~~l~---------~~~ggii~I~GpnGSGKTTlL~allg~l~ 192 (418)
T 1p9r_A 144 LDLHSLGMTAHNHDNFRRLI---------KRPHGIILVTGPTGSGKSTTLYAGLQELN 192 (418)
T ss_dssp CCGGGSCCCHHHHHHHHHHH---------TSSSEEEEEECSTTSCHHHHHHHHHHHHC
T ss_pred CCHHHcCCCHHHHHHHHHHH---------HhcCCeEEEECCCCCCHHHHHHHHHhhcC
Confidence 34666655555544454432 12334589999999999999999998875
No 304
>3k53_A Ferrous iron transport protein B; GTPase fold, helical bundle, G-protein, prokaryote, GTP-BIND nucleotide-binding, metal transport; 2.70A {Pyrococcus furiosus}
Probab=95.31 E-value=0.066 Score=51.49 Aligned_cols=23 Identities=26% Similarity=0.416 Sum_probs=20.6
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+.|.|+||+|||+|..++...
T Consensus 4 ~~i~lvG~~g~GKTTL~n~l~g~ 26 (271)
T 3k53_A 4 KTVALVGNPNVGKTTIFNALTGL 26 (271)
T ss_dssp EEEEEEECSSSSHHHHHHHHHTT
T ss_pred eEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999754
No 305
>3aez_A Pantothenate kinase; transferase, homodimer, COA biosynthesis, nucleotide binding binding, cytoplasm, nucleotide-binding; HET: GDP PAZ; 2.20A {Mycobacterium tuberculosis} PDB: 2ges_A* 2geu_A* 2gev_A* 2zs7_A* 2zs8_A* 2zs9_A* 2zsa_A* 2zsb_A* 2zsd_A* 2zse_A* 2zsf_A* 2get_A* 3af0_A* 3af1_A* 3af2_A* 3af3_A* 3af4_A* 3avp_A* 3avo_A* 3avq_A*
Probab=95.30 E-value=0.021 Score=56.57 Aligned_cols=27 Identities=22% Similarity=0.078 Sum_probs=23.0
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
++.-+.|.||+|+|||||++.|+..+.
T Consensus 89 ~g~ivgI~G~sGsGKSTL~~~L~gll~ 115 (312)
T 3aez_A 89 VPFIIGVAGSVAVGKSTTARVLQALLA 115 (312)
T ss_dssp CCEEEEEECCTTSCHHHHHHHHHHHHH
T ss_pred CCEEEEEECCCCchHHHHHHHHHhhcc
Confidence 334688999999999999999998763
No 306
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=95.30 E-value=0.034 Score=52.36 Aligned_cols=18 Identities=28% Similarity=0.373 Sum_probs=15.3
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 67 ~~~l~~apTGsGKT~~~~ 84 (242)
T 3fe2_A 67 LDMVGVAQTGSGKTLSYL 84 (242)
T ss_dssp CCEEEEECTTSCHHHHHH
T ss_pred CCEEEECCCcCHHHHHHH
Confidence 369999999999998743
No 307
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=95.29 E-value=0.057 Score=49.13 Aligned_cols=23 Identities=30% Similarity=0.505 Sum_probs=17.2
Q ss_pred cceEEecCCCCchHHHHH-HHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR-ELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~-alA~~ 291 (512)
+++++.+|+|+|||..+- .+...
T Consensus 39 ~~~li~~~TGsGKT~~~~~~~~~~ 62 (207)
T 2gxq_A 39 KDLIGQARTGTGKTLAFALPIAER 62 (207)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHHH
Confidence 369999999999998743 33343
No 308
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=95.28 E-value=0.011 Score=58.23 Aligned_cols=38 Identities=29% Similarity=0.334 Sum_probs=27.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC--CCeEEEeCCCC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG--LDYALMTGGDV 304 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~~~~~ 304 (512)
++..+.|.||+|+||||+++.||..+. ..-+.+.+.+.
T Consensus 101 ~g~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g~D~ 140 (304)
T 1rj9_A 101 KGRVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCAGDT 140 (304)
T ss_dssp SSSEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEECCCC
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEeecC
Confidence 345789999999999999999998763 12334444444
No 309
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=95.25 E-value=0.011 Score=58.37 Aligned_cols=27 Identities=37% Similarity=0.588 Sum_probs=23.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+...+.|+||+|+|||||++.|+..+.
T Consensus 125 ~Ge~vaIvGpsGsGKSTLl~lL~gl~~ 151 (305)
T 2v9p_A 125 KKNCLAFIGPPNTGKSMLCNSLIHFLG 151 (305)
T ss_dssp TCSEEEEECSSSSSHHHHHHHHHHHHT
T ss_pred CCCEEEEECCCCCcHHHHHHHHhhhcC
Confidence 334689999999999999999999873
No 310
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=95.24 E-value=0.0066 Score=57.03 Aligned_cols=24 Identities=29% Similarity=0.517 Sum_probs=15.4
Q ss_pred cceEEecCCCCchHHHHHHHH-HHh
Q 010366 269 RNMLFYGPPGTGKTMAARELA-RKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA-~~l 292 (512)
.-+.|+||+|+||||+++.|+ ..+
T Consensus 28 ~ii~l~Gp~GsGKSTl~~~L~~~~~ 52 (231)
T 3lnc_A 28 VILVLSSPSGCGKTTVANKLLEKQK 52 (231)
T ss_dssp CEEEEECSCC----CHHHHHHC---
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCC
Confidence 358899999999999999999 765
No 311
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=95.21 E-value=0.073 Score=55.01 Aligned_cols=22 Identities=32% Similarity=0.428 Sum_probs=19.0
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
+-.++.|+||||||+++..++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~ 183 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVN 183 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCC
T ss_pred cEEEEEcCCCCCHHHHHHHHhc
Confidence 4578999999999999988764
No 312
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=95.20 E-value=0.019 Score=62.78 Aligned_cols=37 Identities=30% Similarity=0.426 Sum_probs=24.4
Q ss_pred cChHHHHHHHHHHHHhhchhhcCCCCcceEEecCCCCchHHHHHHHH
Q 010366 243 LHPSLQKRIRQLSGATANTKAHNAPFRNMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 243 g~~~~~~~l~~~~~~~~~~~~~~~p~~~vLL~GppGtGKT~lA~alA 289 (512)
.++..++++...+. ..+ -.||.||||||||+++-.+.
T Consensus 190 LN~~Q~~AV~~al~--------~~~--~~lI~GPPGTGKT~ti~~~I 226 (646)
T 4b3f_X 190 LDTSQKEAVLFALS--------QKE--LAIIHGPPGTGKTTTVVEII 226 (646)
T ss_dssp CCHHHHHHHHHHHH--------CSS--EEEEECCTTSCHHHHHHHHH
T ss_pred CCHHHHHHHHHHhc--------CCC--ceEEECCCCCCHHHHHHHHH
Confidence 46666777655431 112 48999999999998655443
No 313
>1wb9_A DNA mismatch repair protein MUTS; DNA-binding, ATP-binding, DNA binding, DNA repair, mismatch recognition; HET: DNA ADP; 2.10A {Escherichia coli} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1wbb_A* 1e3m_A* 1oh5_A* 1oh6_A* 1oh7_A* 1oh8_A* 1w7a_A* 2wtu_A* 1wbd_A* 1ng9_A* 3k0s_A*
Probab=95.19 E-value=0.057 Score=60.26 Aligned_cols=23 Identities=30% Similarity=0.391 Sum_probs=20.4
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|+||.|+||||+.+.++..
T Consensus 608 ~i~~ItGpNGsGKSTlLr~iagl 630 (800)
T 1wb9_A 608 RMLIITGPNMGGKSTYMRQTALI 630 (800)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHHH
Confidence 46899999999999999999754
No 314
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=95.11 E-value=0.07 Score=50.16 Aligned_cols=17 Identities=47% Similarity=0.778 Sum_probs=14.8
Q ss_pred cceEEecCCCCchHHHH
Q 010366 269 RNMLFYGPPGTGKTMAA 285 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA 285 (512)
+++++.+|+|+|||..+
T Consensus 67 ~~~l~~a~TGsGKT~~~ 83 (245)
T 3dkp_A 67 RELLASAPTGSGKTLAF 83 (245)
T ss_dssp CCEEEECCTTSCHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 36999999999999864
No 315
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=95.11 E-value=0.084 Score=49.01 Aligned_cols=18 Identities=28% Similarity=0.477 Sum_probs=15.2
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 58 ~~~l~~apTGsGKT~~~~ 75 (228)
T 3iuy_A 58 IDLIVVAQTGTGKTLSYL 75 (228)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999998643
No 316
>1m8p_A Sulfate adenylyltransferase; rossmann fold, phosphosulfate binding, T-state; HET: PPS; 2.60A {Penicillium chrysogenum} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1i2d_A*
Probab=95.04 E-value=0.015 Score=62.43 Aligned_cols=33 Identities=24% Similarity=0.313 Sum_probs=28.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC----CCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG----LDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~----~~~~~v~~ 301 (512)
..++|+|+||+||||+|+.|+..++ .+++.++.
T Consensus 397 ~~I~l~GlsGSGKSTiA~~La~~L~~~G~~~~~~lD~ 433 (573)
T 1m8p_A 397 FTIFLTGYMNSGKDAIARALQVTLNQQGGRSVSLLLG 433 (573)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHHCSSCEEEEEH
T ss_pred eEEEeecCCCCCHHHHHHHHHHHhcccCCceEEEECc
Confidence 4689999999999999999999986 67777763
No 317
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=95.01 E-value=0.014 Score=52.28 Aligned_cols=33 Identities=15% Similarity=0.127 Sum_probs=26.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEeC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMTG 301 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~~ 301 (512)
..+.|.|++|+|||+++..|+..+ +..+..+..
T Consensus 5 ~~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik~ 40 (169)
T 1xjc_A 5 NVWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVKH 40 (169)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEEe
Confidence 368999999999999999998875 455555553
No 318
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=94.92 E-value=0.015 Score=57.97 Aligned_cols=26 Identities=31% Similarity=0.335 Sum_probs=23.0
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
++..+.|.||+|+||||+++.||..+
T Consensus 128 ~g~vi~lvG~nGaGKTTll~~Lag~l 153 (328)
T 3e70_C 128 KPYVIMFVGFNGSGKTTTIAKLANWL 153 (328)
T ss_dssp SSEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CCeEEEEECCCCCCHHHHHHHHHHHH
Confidence 44579999999999999999999875
No 319
>1sky_E F1-ATPase, F1-ATP synthase; F1FO ATP synthase, alpha3BETA3 SUBC F1-ATPase, hydrolase; 3.20A {Bacillus SP} SCOP: a.69.1.1 b.49.1.1 c.37.1.11
Probab=94.90 E-value=0.045 Score=56.93 Aligned_cols=23 Identities=30% Similarity=0.547 Sum_probs=20.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.++|+||||+|||+|+..++...
T Consensus 153 ~~~i~G~sGvGKTtL~~~l~~~~ 175 (473)
T 1sky_E 153 KIGLFGGAGVGKTVLIQELIHNI 175 (473)
T ss_dssp EEEEECCSSSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCccHHHHHHHhhh
Confidence 58999999999999999887653
No 320
>3dz8_A RAS-related protein RAB-3B; GDP, GTPase, structural genomics consortium, SGC, cell GTP-binding, lipoprotein, membrane, methylation; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=94.90 E-value=0.072 Score=47.79 Aligned_cols=23 Identities=26% Similarity=0.336 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.|+|.|++|+|||+|+..+....
T Consensus 25 ki~v~G~~~~GKSsli~~l~~~~ 47 (191)
T 3dz8_A 25 KLLIIGNSSVGKTSFLFRYADDT 47 (191)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHT
T ss_pred EEEEECCCCcCHHHHHHHHhcCC
Confidence 69999999999999999998754
No 321
>4dsu_A GTPase KRAS, isoform 2B; small G-protein, signaling, hydrolase; HET: GDP; 1.70A {Homo sapiens} PDB: 4dsn_A* 4dst_A* 4dso_A*
Probab=94.88 E-value=0.11 Score=45.93 Aligned_cols=22 Identities=23% Similarity=0.486 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 6 ki~v~G~~~~GKSsli~~l~~~ 27 (189)
T 4dsu_A 6 KLVVVGADGVGKSALTIQLIQN 27 (189)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 6999999999999999999864
No 322
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=94.87 E-value=0.26 Score=49.23 Aligned_cols=20 Identities=45% Similarity=0.479 Sum_probs=16.6
Q ss_pred cceEEecCCCCchHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAREL 288 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~al 288 (512)
+++++.+|+|+|||..+-..
T Consensus 45 ~~~lv~a~TGsGKT~~~~~~ 64 (395)
T 3pey_A 45 RNMIAQSQSGTGKTAAFSLT 64 (395)
T ss_dssp CCEEEECCTTSCHHHHHHHH
T ss_pred CeEEEECCCCCcHHHHHHHH
Confidence 57999999999999865443
No 323
>3iby_A Ferrous iron transport protein B; G protein, G domain, iron uptake, cell inner membrane, cell GTP-binding, ION transport, membrane; 2.50A {Legionella pneumophila}
Probab=94.83 E-value=0.16 Score=48.44 Aligned_cols=22 Identities=32% Similarity=0.486 Sum_probs=20.0
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+.|.|+||+|||+|..++...
T Consensus 3 kI~lvG~~n~GKSTL~n~L~g~ 24 (256)
T 3iby_A 3 HALLIGNPNCGKTTLFNALTNA 24 (256)
T ss_dssp EEEEEESTTSSHHHHHHHHHTT
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 6999999999999999999754
No 324
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=94.82 E-value=0.014 Score=52.51 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=21.2
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++||.|+||+|||++|..+...
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 47999999999999999999874
No 325
>3pqc_A Probable GTP-binding protein ENGB; rossmann fold, GTPase, cell cycle, hydrolase; HET: GDP; 1.90A {Thermotoga maritima} PDB: 3pr1_A
Probab=94.81 E-value=0.089 Score=46.91 Aligned_cols=22 Identities=23% Similarity=0.398 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 25 ~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 3pqc_A 25 EVAFVGRSNVGKSSLLNALFNR 46 (195)
T ss_dssp EEEEEEBTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 326
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=94.79 E-value=0.038 Score=51.90 Aligned_cols=18 Identities=28% Similarity=0.370 Sum_probs=15.2
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 68 ~~~li~apTGsGKT~~~~ 85 (237)
T 3bor_A 68 YDVIAQAQSGTGKTATFA 85 (237)
T ss_dssp CCEEECCCSSHHHHHHHH
T ss_pred CCEEEECCCCCcHHHHHH
Confidence 369999999999997643
No 327
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=94.78 E-value=0.061 Score=50.27 Aligned_cols=18 Identities=33% Similarity=0.449 Sum_probs=15.2
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 63 ~~~li~a~TGsGKT~~~~ 80 (236)
T 2pl3_A 63 KDVLGAAKTGSGKTLAFL 80 (236)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEeCCCCcHHHHHH
Confidence 369999999999998643
No 328
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=94.77 E-value=0.077 Score=52.18 Aligned_cols=26 Identities=19% Similarity=0.285 Sum_probs=21.6
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHH
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
.|++-|.|+|+||+|||+|..++...
T Consensus 8 ~~~g~v~ivG~~nvGKSTLin~l~g~ 33 (308)
T 3iev_A 8 MKVGYVAIVGKPNVGKSTLLNNLLGT 33 (308)
T ss_dssp CEEEEEEEECSTTSSHHHHHHHHHTS
T ss_pred CCCCEEEEECCCCCcHHHHHHHHhCC
Confidence 34456899999999999999999654
No 329
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=94.76 E-value=0.096 Score=52.82 Aligned_cols=21 Identities=38% Similarity=0.362 Sum_probs=16.6
Q ss_pred cceEEecCCCCchHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA 289 (512)
+++++.+|+|+|||..+-..+
T Consensus 59 ~~~li~a~TGsGKT~~~~~~~ 79 (400)
T 1s2m_A 59 RDILARAKNGTGKTAAFVIPT 79 (400)
T ss_dssp CCEEEECCTTSCHHHHHHHHH
T ss_pred CCEEEECCCCcHHHHHHHHHH
Confidence 369999999999998654443
No 330
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=94.75 E-value=0.019 Score=51.38 Aligned_cols=25 Identities=20% Similarity=0.239 Sum_probs=22.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+-.+|+||+|+|||+++++|+-.++
T Consensus 27 g~~~i~G~NGsGKStll~ai~~~l~ 51 (182)
T 3kta_A 27 GFTAIVGANGSGKSNIGDAILFVLG 51 (182)
T ss_dssp SEEEEEECTTSSHHHHHHHHHHHTT
T ss_pred CcEEEECCCCCCHHHHHHHHHHHHc
Confidence 3578999999999999999988765
No 331
>3qf4_A ABC transporter, ATP-binding protein; multidrug transporter, transport protein; HET: ANP; 2.90A {Thermotoga maritima}
Probab=94.74 E-value=0.19 Score=54.14 Aligned_cols=27 Identities=22% Similarity=0.301 Sum_probs=22.8
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+...+.|+||+|+||||+++.++..+.
T Consensus 368 ~Ge~~~ivG~sGsGKSTll~~l~g~~~ 394 (587)
T 3qf4_A 368 PGSLVAVLGETGSGKSTLMNLIPRLID 394 (587)
T ss_dssp TTCEEEEECSSSSSHHHHHHTTTTSSC
T ss_pred CCCEEEEECCCCCCHHHHHHHHhCCcc
Confidence 334699999999999999999987653
No 332
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=94.74 E-value=0.063 Score=50.95 Aligned_cols=18 Identities=33% Similarity=0.436 Sum_probs=15.3
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 81 ~~~lv~a~TGsGKT~~~~ 98 (249)
T 3ber_A 81 RDIIGLAETGSGKTGAFA 98 (249)
T ss_dssp CCEEEECCTTSCHHHHHH
T ss_pred CCEEEEcCCCCCchhHhH
Confidence 469999999999998643
No 333
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=94.71 E-value=0.044 Score=55.56 Aligned_cols=24 Identities=33% Similarity=0.542 Sum_probs=21.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..++|.||||||||++++.|++..
T Consensus 175 Qr~~IvG~sG~GKTtLl~~Iar~i 198 (422)
T 3ice_A 175 QRGLIVAPPKAGKTMLLQNIAQSI 198 (422)
T ss_dssp CEEEEECCSSSSHHHHHHHHHHHH
T ss_pred cEEEEecCCCCChhHHHHHHHHHH
Confidence 469999999999999999998764
No 334
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=94.71 E-value=0.019 Score=51.75 Aligned_cols=24 Identities=29% Similarity=0.286 Sum_probs=21.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
.-+.|.||+|+|||++++.+...+
T Consensus 7 ~~i~i~G~sGsGKTTl~~~l~~~l 30 (174)
T 1np6_A 7 PLLAFAAWSGTGKTTLLKKLIPAL 30 (174)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEEeCCCCCHHHHHHHHHHhc
Confidence 468999999999999999998764
No 335
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=94.70 E-value=0.05 Score=56.26 Aligned_cols=17 Identities=29% Similarity=0.339 Sum_probs=15.2
Q ss_pred cceEEecCCCCchHHHH
Q 010366 269 RNMLFYGPPGTGKTMAA 285 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA 285 (512)
++++++||+|+|||..+
T Consensus 3 ~~~lv~a~TGsGKT~~~ 19 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRV 19 (431)
T ss_dssp CEEEEECCTTSCTTTTH
T ss_pred CEEEEEcCCCCCHHHHH
Confidence 47999999999999875
No 336
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=94.70 E-value=0.11 Score=51.30 Aligned_cols=23 Identities=22% Similarity=0.183 Sum_probs=18.1
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
+++++.+|+|+|||..+-..+-.
T Consensus 45 ~~~l~~~~TGsGKT~~~~~~~~~ 67 (367)
T 1hv8_A 45 YNIVAQARTGSGKTASFAIPLIE 67 (367)
T ss_dssp SEEEEECCSSSSHHHHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHHHHHHH
Confidence 36999999999999986554433
No 337
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=94.69 E-value=0.37 Score=48.16 Aligned_cols=21 Identities=24% Similarity=0.222 Sum_probs=17.0
Q ss_pred cceEEecCCCCchHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA 289 (512)
+++++.+|+|+|||..+-..+
T Consensus 46 ~~~lv~a~TGsGKT~~~~~~~ 66 (391)
T 1xti_A 46 MDVLCQAKSGMGKTAVFVLAT 66 (391)
T ss_dssp CCEEEECSSCSSHHHHHHHHH
T ss_pred CcEEEECCCCCcHHHHHHHHH
Confidence 469999999999998764443
No 338
>1ewq_A DNA mismatch repair protein MUTS; multiple domains of protein, mostly mixed alpha-beta structures, one domain is entirely helical; HET: DNA; 2.20A {Thermus aquaticus} SCOP: a.113.1.1 c.37.1.12 c.55.6.1 d.75.2.1 PDB: 1nne_A* 1fw6_A* 1ewr_A*
Probab=94.68 E-value=0.083 Score=58.61 Aligned_cols=23 Identities=30% Similarity=0.333 Sum_probs=20.2
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|+||+|+||||+.+.++..
T Consensus 577 ~i~~I~GpNGsGKSTlLr~iagl 599 (765)
T 1ewq_A 577 ELVLITGPNMAGKSTFLRQTALI 599 (765)
T ss_dssp CEEEEESCSSSSHHHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHHhh
Confidence 35899999999999999999754
No 339
>2www_A Methylmalonic aciduria type A protein, mitochondrial; transport protein, nucleotide-binding; HET: GDP 2PE; 2.64A {Homo sapiens}
Probab=94.65 E-value=0.097 Score=52.51 Aligned_cols=25 Identities=24% Similarity=0.376 Sum_probs=21.7
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
...+.|.|+||+|||||..+++..+
T Consensus 74 ~~~v~lvG~pgaGKSTLln~L~~~~ 98 (349)
T 2www_A 74 AFRVGLSGPPGAGKSTFIEYFGKML 98 (349)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHH
T ss_pred ceEEEEEcCCCCCHHHHHHHHHHHh
Confidence 3468999999999999999998754
No 340
>3t34_A Dynamin-related protein 1A, linker, dynamin-relat 1A; dynamin-like protein 1A, GTPase, membrane fission, motor Pro; HET: GDP; 2.40A {Arabidopsis thaliana} PDB: 3t35_A*
Probab=94.63 E-value=0.11 Score=52.19 Aligned_cols=21 Identities=14% Similarity=0.287 Sum_probs=19.9
Q ss_pred ceEEecCCCCchHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~ 290 (512)
.|.++|++|+|||++..+|..
T Consensus 36 ~I~vvG~~~sGKSSLln~l~g 56 (360)
T 3t34_A 36 AIAVVGGQSSGKSSVLESIVG 56 (360)
T ss_dssp EEEEECBTTSSHHHHHHHHHT
T ss_pred EEEEECCCCCcHHHHHHHHhC
Confidence 799999999999999999986
No 341
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=94.63 E-value=0.06 Score=51.49 Aligned_cols=18 Identities=39% Similarity=0.562 Sum_probs=15.3
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 92 ~~~lv~a~TGsGKT~~~~ 109 (262)
T 3ly5_A 92 RDLLAAAKTGSGKTLAFL 109 (262)
T ss_dssp CCCEECCCTTSCHHHHHH
T ss_pred CcEEEEccCCCCchHHHH
Confidence 369999999999998644
No 342
>3tif_A Uncharacterized ABC transporter ATP-binding prote; nucleotide-binding domain, ABC transporter ATPase; HET: ADP; 1.80A {Methanocaldococcus jannaschii dsm 2661ORGANISM_TAXID} PDB: 1l2t_A* 1f3o_A*
Probab=94.58 E-value=0.017 Score=54.75 Aligned_cols=25 Identities=20% Similarity=0.336 Sum_probs=21.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.||+|+|||||.+.++....
T Consensus 32 e~~~iiG~nGsGKSTLl~~l~Gl~~ 56 (235)
T 3tif_A 32 EFVSIMGPSGSGKSTMLNIIGCLDK 56 (235)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCcHHHHHHHHhcCCC
Confidence 3588999999999999999987653
No 343
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=94.55 E-value=0.039 Score=51.49 Aligned_cols=32 Identities=28% Similarity=0.311 Sum_probs=26.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~~v~ 300 (512)
.-+.|.|++|+||||+++.|+..++.+...+.
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~~~~~~ 37 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPNCKLLK 37 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSSEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhcccceEEE
Confidence 35889999999999999999999987544433
No 344
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=94.54 E-value=0.02 Score=57.81 Aligned_cols=26 Identities=27% Similarity=0.345 Sum_probs=22.8
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
++..+.|.||+|+||||+++.||..+
T Consensus 156 ~g~vi~lvG~nGsGKTTll~~Lag~l 181 (359)
T 2og2_A 156 KPAVIMIVGVNGGGKTTSLGKLAHRL 181 (359)
T ss_dssp SSEEEEEECCTTSCHHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCChHHHHHHHHHhhc
Confidence 34568999999999999999999876
No 345
>1p5z_B DCK, deoxycytidine kinase; nucleoside kinase, P-loop, ARAC, cytarabine, transferase; HET: AR3 ADP; 1.60A {Homo sapiens} SCOP: c.37.1.1 PDB: 1p60_A* 1p61_B* 1p62_B* 2a7q_A* 2qrn_A* 2qro_A* 3exk_A* 3hp1_A* 2no7_A* 2no1_A* 2no6_A* 2no0_A* 2no9_A* 2noa_A* 2zi5_A* 2zi4_A* 2zi6_A* 2zi7_B* 2zia_A* 3kfx_A* ...
Probab=94.53 E-value=0.0086 Score=57.50 Aligned_cols=26 Identities=15% Similarity=0.204 Sum_probs=23.2
Q ss_pred CcceEEecCCCCchHHHHHHHHHHhC
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
+.-|+|.|++|+||||+++.|+..++
T Consensus 24 ~~~I~ieG~~GsGKST~~~~L~~~l~ 49 (263)
T 1p5z_B 24 IKKISIEGNIAAGKSTFVNILKQLCE 49 (263)
T ss_dssp CEEEEEECSTTSSHHHHHTTTGGGCT
T ss_pred ceEEEEECCCCCCHHHHHHHHHHhcC
Confidence 34689999999999999999999984
No 346
>2p67_A LAO/AO transport system kinase; ARGK, structural GEN PSI-2, protein structure initiative, NEW YORK SGX research for structural genomics; 1.80A {Escherichia coli} SCOP: c.37.1.10
Probab=94.52 E-value=0.13 Score=51.29 Aligned_cols=25 Identities=20% Similarity=0.244 Sum_probs=21.7
Q ss_pred CcceEEecCCCCchHHHHHHHHHHh
Q 010366 268 FRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
...+.|.|+||+||||++..|+..+
T Consensus 56 ~~~i~i~G~~g~GKSTl~~~l~~~~ 80 (341)
T 2p67_A 56 TLRLGVTGTPGAGKSTFLEAFGMLL 80 (341)
T ss_dssp SEEEEEEECTTSCHHHHHHHHHHHH
T ss_pred CEEEEEEcCCCCCHHHHHHHHHHHH
Confidence 3468999999999999999998764
No 347
>1zd9_A ADP-ribosylation factor-like 10B; transport protein, GDP-binding, membrane trafficking, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2al7_A* 2h18_A*
Probab=94.50 E-value=0.061 Score=48.22 Aligned_cols=22 Identities=23% Similarity=0.255 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 24 ki~v~G~~~~GKSsli~~l~~~ 45 (188)
T 1zd9_A 24 ELTLVGLQYSGKTTFVNVIASG 45 (188)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 348
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=94.49 E-value=0.032 Score=52.49 Aligned_cols=31 Identities=23% Similarity=0.296 Sum_probs=22.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHh-------CCCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKS-------GLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l-------~~~~~~v~ 300 (512)
-|.|.||+|+||||+++.|+..+ +.+++...
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l~~~~~~~g~~v~~~r 64 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRLQERLGPAGRHVVVTR 64 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHHHHHHGGGTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHhhccccceeeeeec
Confidence 48889999999999999999887 55555443
No 349
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=94.48 E-value=0.021 Score=56.32 Aligned_cols=25 Identities=24% Similarity=0.218 Sum_probs=22.6
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.||+|+||||+++.|+..++
T Consensus 81 ~iigI~G~~GsGKSTl~~~L~~~l~ 105 (308)
T 1sq5_A 81 YIISIAGSVAVGKSTTARVLQALLS 105 (308)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEEECCCCCCHHHHHHHHHHHHh
Confidence 4688999999999999999999875
No 350
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=94.44 E-value=0.017 Score=53.57 Aligned_cols=22 Identities=36% Similarity=0.449 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+.|.||+|+|||||++.++..
T Consensus 24 ~~~liG~nGsGKSTLl~~l~Gl 45 (208)
T 3b85_A 24 IVFGLGPAGSGKTYLAMAKAVQ 45 (208)
T ss_dssp EEEEECCTTSSTTHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 4889999999999999999875
No 351
>2qm8_A GTPase/ATPase; G protein, G3E, metallochaperone, chaperone; HET: MSE; 1.70A {Methylobacterium extorquens} SCOP: c.37.1.10 PDB: 2qm7_A*
Probab=94.44 E-value=0.06 Score=53.75 Aligned_cols=24 Identities=25% Similarity=0.328 Sum_probs=21.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||||+||||+.+.++..+
T Consensus 56 ~~v~i~G~~GaGKSTLl~~l~g~~ 79 (337)
T 2qm8_A 56 IRVGITGVPGVGKSTTIDALGSLL 79 (337)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHhh
Confidence 468999999999999999998764
No 352
>2cbz_A Multidrug resistance-associated protein 1; ABC proteins, MRP1/ABCC1, nucleotide-binding domain, ATP- binding, hydrolysis, transport; HET: ATP; 1.5A {Homo sapiens}
Probab=94.42 E-value=0.019 Score=54.44 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||++.|+..+
T Consensus 32 e~~~i~G~nGsGKSTLl~~l~Gl~ 55 (237)
T 2cbz_A 32 ALVAVVGQVGCGKSSLLSALLAEM 55 (237)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTCS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 468999999999999999998764
No 353
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=94.41 E-value=0.026 Score=59.56 Aligned_cols=26 Identities=4% Similarity=-0.115 Sum_probs=24.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL 294 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~ 294 (512)
..++|.|++||||||++++||..++.
T Consensus 396 ~~I~l~GlsGsGKSTIa~~La~~L~~ 421 (511)
T 1g8f_A 396 FSIVLGNSLTVSREQLSIALLSTFLQ 421 (511)
T ss_dssp EEEEECTTCCSCHHHHHHHHHHHHTT
T ss_pred eEEEecccCCCCHHHHHHHHHHHHHH
Confidence 46999999999999999999999974
No 354
>2pcj_A ABC transporter, lipoprotein-releasing system ATP-binding protein; structural genomics; 1.70A {Aquifex aeolicus} PDB: 2pcl_A
Probab=94.40 E-value=0.017 Score=54.25 Aligned_cols=24 Identities=21% Similarity=0.239 Sum_probs=21.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+.|.||+|+|||||.+.++....
T Consensus 32 ~~~iiG~nGsGKSTLl~~l~Gl~~ 55 (224)
T 2pcj_A 32 FVSIIGASGSGKSTLLYILGLLDA 55 (224)
T ss_dssp EEEEEECTTSCHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999987653
No 355
>3t1o_A Gliding protein MGLA; G domain containing protein, bacterial GTPase, bacterial POL motility, POLE localisation, alpha/beta protein; HET: GDP; 1.90A {Thermus thermophilus} PDB: 3t12_A* 3t1q_A* 3t1t_A* 3t1v_A*
Probab=94.38 E-value=0.27 Score=43.73 Aligned_cols=23 Identities=30% Similarity=0.564 Sum_probs=20.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.++|.|++|+|||+|++.+....
T Consensus 16 ki~vvG~~~~GKssL~~~l~~~~ 38 (198)
T 3t1o_A 16 KIVYYGPGLSGKTTNLKWIYSKV 38 (198)
T ss_dssp EEEEECSTTSSHHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHHhhc
Confidence 69999999999999998887654
No 356
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=94.36 E-value=0.02 Score=54.02 Aligned_cols=25 Identities=20% Similarity=0.267 Sum_probs=22.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.-+.|.|++|+||||+++.|+..++
T Consensus 3 ~~i~~~G~~g~GKtt~~~~l~~~l~ 27 (241)
T 2ocp_A 3 RRLSIEGNIAVGKSTFVKLLTKTYP 27 (241)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHHCT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHcC
Confidence 3589999999999999999999984
No 357
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=94.35 E-value=0.013 Score=52.76 Aligned_cols=24 Identities=17% Similarity=0.174 Sum_probs=21.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+.|.||+|+||||+++.|+..+.
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~~ 27 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPILR 27 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHhh
Confidence 588999999999999999998864
No 358
>2onk_A Molybdate/tungstate ABC transporter, ATP-binding protein; membrane protein; 3.10A {Archaeoglobus fulgidus} SCOP: c.37.1.12
Probab=94.34 E-value=0.023 Score=54.03 Aligned_cols=25 Identities=24% Similarity=0.397 Sum_probs=22.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.||+|+|||||.+.++....
T Consensus 25 e~~~liG~nGsGKSTLl~~l~Gl~~ 49 (240)
T 2onk_A 25 DYCVLLGPTGAGKSVFLELIAGIVK 49 (240)
T ss_dssp SEEEEECCTTSSHHHHHHHHHTSSC
T ss_pred EEEEEECCCCCCHHHHHHHHhCCCC
Confidence 4688999999999999999997653
No 359
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=94.30 E-value=0.12 Score=52.59 Aligned_cols=20 Identities=25% Similarity=0.403 Sum_probs=16.1
Q ss_pred cceEEecCCCCchHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAREL 288 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~al 288 (512)
+++++.+|+|+|||.++-..
T Consensus 37 ~~~lv~apTGsGKT~~~l~~ 56 (414)
T 3oiy_A 37 KSFTMVAPTGVGKTTFGMMT 56 (414)
T ss_dssp CCEECCSCSSSSHHHHHHHH
T ss_pred CCEEEEeCCCCCHHHHHHHH
Confidence 36999999999999954443
No 360
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=94.25 E-value=0.025 Score=52.69 Aligned_cols=31 Identities=26% Similarity=0.410 Sum_probs=24.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC---CCeEEEe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG---LDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~---~~~~~v~ 300 (512)
-+.|.||+|+||||+++.|+..+. .+++.+.
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l~~~~~~v~~~~ 41 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERLRERGIEVQLTR 41 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCCccccc
Confidence 478899999999999999998874 4554443
No 361
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=94.23 E-value=0.019 Score=58.03 Aligned_cols=32 Identities=22% Similarity=0.340 Sum_probs=25.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC--CCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG--LDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~--~~~~~v~ 300 (512)
..++|+||+|+||||++++++..+. ...+.+.
T Consensus 176 ~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 176 RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 3699999999999999999998764 2344444
No 362
>3sop_A Neuronal-specific septin-3; hydrolase; HET: GDP; 2.88A {Homo sapiens}
Probab=94.22 E-value=0.022 Score=55.05 Aligned_cols=23 Identities=26% Similarity=0.504 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
++.|.||+|+|||||.+.|+...
T Consensus 4 ~v~lvG~nGaGKSTLln~L~g~~ 26 (270)
T 3sop_A 4 NIMVVGQSGLGKSTLVNTLFKSQ 26 (270)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 363
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=94.22 E-value=0.086 Score=58.71 Aligned_cols=55 Identities=18% Similarity=0.211 Sum_probs=31.5
Q ss_pred cCCCCCCccccChHHHHHHHHHHHHh--------hchhhcCCCCcceEEecCCCCchHHHHHHHHH
Q 010366 233 KNGNGFGDVILHPSLQKRIRQLSGAT--------ANTKAHNAPFRNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 233 ~~~~~~~~vvg~~~~~~~l~~~~~~~--------~~~~~~~~p~~~vLL~GppGtGKT~lA~alA~ 290 (512)
.+...|+++-..+...+.+...-... ...... ...+++.||+|+|||+++..+..
T Consensus 69 ~~~~~f~~~~l~~~~~~~l~~r~~lP~~~q~~~i~~~l~~---~~~vii~gpTGSGKTtllp~ll~ 131 (773)
T 2xau_A 69 GKINPFTGREFTPKYVDILKIRRELPVHAQRDEFLKLYQN---NQIMVFVGETGSGKTTQIPQFVL 131 (773)
T ss_dssp SSBCTTTCSBCCHHHHHHHHHHTTSGGGGGHHHHHHHHHH---CSEEEEECCTTSSHHHHHHHHHH
T ss_pred CCCCCccccCCCHHHHHHHHHhhcCChHHHHHHHHHHHhC---CCeEEEECCCCCCHHHHHHHHHH
Confidence 34456777766666655553211000 000001 13599999999999997666643
No 364
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=94.19 E-value=0.1 Score=48.66 Aligned_cols=17 Identities=29% Similarity=0.444 Sum_probs=14.8
Q ss_pred cceEEecCCCCchHHHH
Q 010366 269 RNMLFYGPPGTGKTMAA 285 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA 285 (512)
+++++.+|+|+|||..+
T Consensus 62 ~~~l~~a~TGsGKT~~~ 78 (230)
T 2oxc_A 62 LDLIVQAKSGTGKTCVF 78 (230)
T ss_dssp CCEEEECCTTSSHHHHH
T ss_pred CCEEEECCCCCcHHHHH
Confidence 46999999999999863
No 365
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=94.18 E-value=0.026 Score=48.77 Aligned_cols=22 Identities=27% Similarity=0.510 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+++..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLKK 24 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 6899999999999999999764
No 366
>2f9l_A RAB11B, member RAS oncogene family; RAB11B GTPase, vesicle transport, hydrolase; HET: GDP; 1.55A {Homo sapiens} SCOP: c.37.1.8 PDB: 2f9m_A* 1yzk_A* 2hv8_A* 2gzd_A* 2gzh_A* 2d7c_A* 3bfk_A*
Probab=94.16 E-value=0.025 Score=51.36 Aligned_cols=22 Identities=23% Similarity=0.507 Sum_probs=20.4
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+.|.||+|+|||+|.+.++..
T Consensus 7 kv~lvG~~g~GKSTLl~~l~~~ 28 (199)
T 2f9l_A 7 KVVLIGDSGVGKSNLLSRFTRN 28 (199)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 5899999999999999999875
No 367
>3szr_A Interferon-induced GTP-binding protein MX1; interferon-induced antiviral GTPase, membrane associated, PR binding; 3.50A {Homo sapiens} PDB: 3zys_B
Probab=94.15 E-value=0.13 Score=55.63 Aligned_cols=23 Identities=17% Similarity=0.302 Sum_probs=20.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+.|.||+|+||||+.++|+...
T Consensus 47 ~iaIvG~nGsGKSTLL~~I~Gl~ 69 (608)
T 3szr_A 47 AIAVIGDQSSGKSSVLEALSGVA 69 (608)
T ss_dssp CEECCCCTTSCHHHHHHHHHSCC
T ss_pred eEEEECCCCChHHHHHHHHhCCC
Confidence 59999999999999999998653
No 368
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=94.12 E-value=0.34 Score=44.52 Aligned_cols=18 Identities=39% Similarity=0.351 Sum_probs=15.2
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 42 ~~~lv~a~TGsGKT~~~~ 59 (219)
T 1q0u_A 42 ESMVGQSQTGTGKTHAYL 59 (219)
T ss_dssp CCEEEECCSSHHHHHHHH
T ss_pred CCEEEECCCCChHHHHHH
Confidence 369999999999998643
No 369
>1b0u_A Histidine permease; ABC transporter, transport protein; HET: ATP; 1.50A {Salmonella typhimurium} SCOP: c.37.1.12
Probab=94.12 E-value=0.023 Score=54.67 Aligned_cols=25 Identities=20% Similarity=0.254 Sum_probs=21.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.||+|+|||||.+.|+..+.
T Consensus 33 e~~~liG~nGsGKSTLlk~l~Gl~~ 57 (262)
T 1b0u_A 33 DVISIIGSSGSGKSTFLRCINFLEK 57 (262)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhcCCC
Confidence 3588999999999999999987654
No 370
>1nrj_B SR-beta, signal recognition particle receptor beta subunit; transmembrane, endoplasmic reticulum, GTP-binding; HET: GTP; 1.70A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=94.11 E-value=0.031 Score=51.42 Aligned_cols=24 Identities=29% Similarity=0.454 Sum_probs=21.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..++|+|++|+|||+++..+....
T Consensus 13 ~~i~~~G~~g~GKTsl~~~l~~~~ 36 (218)
T 1nrj_B 13 PSIIIAGPQNSGKTSLLTLLTTDS 36 (218)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 479999999999999999998764
No 371
>1sgw_A Putative ABC transporter; structural genomics, P protein structure initiative, southeast collaboratory for S genomics, secsg; 1.70A {Pyrococcus furiosus} SCOP: c.37.1.12
Probab=94.11 E-value=0.023 Score=52.95 Aligned_cols=24 Identities=29% Similarity=0.429 Sum_probs=21.2
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+.|.||+|+|||||.+.++..+.
T Consensus 37 ~~~iiG~NGsGKSTLlk~l~Gl~~ 60 (214)
T 1sgw_A 37 VVNFHGPNGIGKTTLLKTISTYLK 60 (214)
T ss_dssp CEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhcCCC
Confidence 588999999999999999987653
No 372
>1oix_A RAS-related protein RAB-11A; small G protein, intracellular trafficking, GTP-binding, lipoprotein, prenylation, protein transport; HET: GDP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1oiw_A* 1oiv_A* 3rwo_B* 3rwm_B*
Probab=94.10 E-value=0.024 Score=51.25 Aligned_cols=23 Identities=22% Similarity=0.488 Sum_probs=20.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+.|.||+|+|||+|++.++...
T Consensus 31 kv~lvG~~g~GKSTLl~~l~~~~ 53 (191)
T 1oix_A 31 KVVLIGDSGVGKSNLLSRFTRNE 53 (191)
T ss_dssp EEEEEECTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHhcCC
Confidence 58999999999999999998754
No 373
>2o8b_B DNA mismatch repair protein MSH6; DNA damage response, somatic hypermutat protein-DNA complex, DNA mispair, cancer; HET: DNA ADP; 2.75A {Homo sapiens} PDB: 2o8c_B* 2o8d_B* 2o8e_B* 2o8f_B*
Probab=94.09 E-value=0.17 Score=57.95 Aligned_cols=21 Identities=29% Similarity=0.373 Sum_probs=18.9
Q ss_pred cceEEecCCCCchHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA 289 (512)
..++|+||.|+||||+.+.++
T Consensus 790 ~i~~ItGpNgsGKSTlLr~iG 810 (1022)
T 2o8b_B 790 YCVLVTGPNMGGKSTLMRQAG 810 (1022)
T ss_dssp CEEEEECCTTSSHHHHHHHHH
T ss_pred cEEEEECCCCCChHHHHHHHH
Confidence 468999999999999999984
No 374
>3i8s_A Ferrous iron transport protein B; GTPase, GPCR, iron uptake, FEO, cell inner membrane, cell ME GTP-binding, ION transport, membrane; 1.80A {Escherichia coli} PDB: 3i8x_A* 3i92_A* 3hyr_A 3hyt_A* 2wic_A* 2wib_A* 2wia_A*
Probab=94.07 E-value=0.27 Score=47.30 Aligned_cols=23 Identities=26% Similarity=0.390 Sum_probs=20.4
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+.|.|+||+|||+|..++...
T Consensus 4 ~~I~lvG~~n~GKSTLin~l~g~ 26 (274)
T 3i8s_A 4 LTIGLIGNPNSGKTTLFNQLTGS 26 (274)
T ss_dssp EEEEEEECTTSSHHHHHHHHHTT
T ss_pred cEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999754
No 375
>2xtp_A GTPase IMAP family member 2; immune system, G protein; HET: MSE; 1.50A {Homo sapiens} PDB: 2xto_A* 2xtm_A* 2xtn_A* 3p1j_A
Probab=94.05 E-value=0.12 Score=49.09 Aligned_cols=24 Identities=33% Similarity=0.544 Sum_probs=21.0
Q ss_pred CcceEEecCCCCchHHHHHHHHHH
Q 010366 268 FRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 268 ~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
...|+|.|+||+|||+|...+...
T Consensus 22 ~~~I~lvG~~g~GKStl~n~l~~~ 45 (260)
T 2xtp_A 22 ELRIILVGKTGTGKSAAGNSILRK 45 (260)
T ss_dssp CEEEEEEECTTSCHHHHHHHHHTS
T ss_pred ceEEEEECCCCCCHHHHHHHHhCC
Confidence 357999999999999999999754
No 376
>3fvq_A Fe(3+) IONS import ATP-binding protein FBPC; nucleotide binding domain, ABC motor domain, ferric iron TRA ATP-binding, cell inner membrane; HET: ATP; 1.90A {Neisseria gonorrhoeae}
Probab=94.05 E-value=0.022 Score=57.34 Aligned_cols=23 Identities=35% Similarity=0.421 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 32 ~~~llGpsGsGKSTLLr~iaGl~ 54 (359)
T 3fvq_A 32 ILFIIGASGCGKTTLLRCLAGFE 54 (359)
T ss_dssp EEEEEESTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 48899999999999999999765
No 377
>1mv5_A LMRA, multidrug resistance ABC transporter ATP-binding and permease protein; asymmetric dimer, tetramer, P-glycoprotein; HET: ATP ADP; 3.10A {Lactococcus lactis} SCOP: c.37.1.12
Probab=94.04 E-value=0.023 Score=53.95 Aligned_cols=24 Identities=33% Similarity=0.436 Sum_probs=21.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||.+.|+..+
T Consensus 29 e~~~i~G~nGsGKSTLl~~l~Gl~ 52 (243)
T 1mv5_A 29 SIIAFAGPSGGGKSTIFSLLERFY 52 (243)
T ss_dssp EEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998764
No 378
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=94.00 E-value=0.25 Score=49.84 Aligned_cols=19 Identities=26% Similarity=0.303 Sum_probs=15.7
Q ss_pred cceEEecCCCCchHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARE 287 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~a 287 (512)
+++++.+|+|+|||..+-.
T Consensus 78 ~~~lv~a~TGsGKT~~~~~ 96 (414)
T 3eiq_A 78 YDVIAQAQSGTGKTATFAI 96 (414)
T ss_dssp CCEEECCCSCSSSHHHHHH
T ss_pred CCEEEECCCCCcccHHHHH
Confidence 3699999999999987433
No 379
>2d2e_A SUFC protein; ABC-ATPase, SUF protein, 310-helix, riken structural genomics/proteomics initiative, RSGI, structural genomics, binding; 1.70A {Thermus thermophilus} PDB: 2d2f_A*
Probab=93.99 E-value=0.029 Score=53.54 Aligned_cols=22 Identities=32% Similarity=0.508 Sum_probs=20.4
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+.|.||+|+|||||.+.|+..
T Consensus 31 ~~~l~G~nGsGKSTLlk~l~Gl 52 (250)
T 2d2e_A 31 VHALMGPNGAGKSTLGKILAGD 52 (250)
T ss_dssp EEEEECSTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5889999999999999999985
No 380
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=93.97 E-value=0.027 Score=61.23 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=18.5
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.||||||||+++..++..
T Consensus 197 ~~li~GppGTGKT~~~~~~i~~ 218 (624)
T 2gk6_A 197 LSLIQGPPGTGKTVTSATIVYH 218 (624)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred CeEEECCCCCCHHHHHHHHHHH
Confidence 5899999999999987776554
No 381
>2zu0_C Probable ATP-dependent transporter SUFC; iron-sulfur cluster, ABC-ATPase, ATP-binding, cytoplasm, nucleotide-binding; HET: MES; 2.20A {Escherichia coli} PDB: 2d3w_A
Probab=93.96 E-value=0.031 Score=53.95 Aligned_cols=23 Identities=30% Similarity=0.521 Sum_probs=20.9
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+.|.||+|+|||||++.|+..
T Consensus 47 e~~~l~G~NGsGKSTLlk~l~Gl 69 (267)
T 2zu0_C 47 EVHAIMGPNGSGKSTLSATLAGR 69 (267)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 35889999999999999999985
No 382
>2ghi_A Transport protein; multidrug resistance protein, MDR, structural genomics, structural genomics consortium, SGC; 2.20A {Plasmodium yoelii yoelii str}
Probab=93.95 E-value=0.027 Score=54.19 Aligned_cols=24 Identities=29% Similarity=0.366 Sum_probs=21.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||.+.|+..+
T Consensus 47 e~~~i~G~nGsGKSTLl~~l~Gl~ 70 (260)
T 2ghi_A 47 TTCALVGHTGSGKSTIAKLLYRFY 70 (260)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhccC
Confidence 468999999999999999998764
No 383
>1g6h_A High-affinity branched-chain amino acid transport ATP-binding protein; beta-core domain; HET: ADP; 1.60A {Methanocaldococcus jannaschii} SCOP: c.37.1.12 PDB: 1gaj_A 1g9x_A*
Probab=93.94 E-value=0.026 Score=54.19 Aligned_cols=23 Identities=26% Similarity=0.392 Sum_probs=20.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+.|.||+|+|||||.+.++..+
T Consensus 35 ~~~liG~nGsGKSTLlk~l~Gl~ 57 (257)
T 1g6h_A 35 VTLIIGPNGSGKSTLINVITGFL 57 (257)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 384
>2ff7_A Alpha-hemolysin translocation ATP-binding protein HLYB; ABC-transporter, transport protein; HET: ADP; 1.60A {Escherichia coli} SCOP: c.37.1.12 PDB: 2ffb_A* 2fgk_A* 2ffa_A* 2fgj_A* 2pmk_A* 3b5j_A* 1mt0_A 1xef_A*
Probab=93.93 E-value=0.026 Score=53.84 Aligned_cols=24 Identities=21% Similarity=0.314 Sum_probs=21.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||++.|+..+
T Consensus 36 e~~~i~G~nGsGKSTLl~~l~Gl~ 59 (247)
T 2ff7_A 36 EVIGIVGRSGSGKSTLTKLIQRFY 59 (247)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 385
>3cr8_A Sulfate adenylyltranferase, adenylylsulfate kinase; APS kinase, transferase, sulfate metabolism, nucleotide 2 kinase; 2.95A {Thiobacillus denitrificans}
Probab=93.91 E-value=0.024 Score=60.54 Aligned_cols=25 Identities=36% Similarity=0.499 Sum_probs=22.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.|++||||||++++|+..++
T Consensus 370 ~iI~LiG~sGSGKSTLar~La~~L~ 394 (552)
T 3cr8_A 370 FTVFFTGLSGAGKSTLARALAARLM 394 (552)
T ss_dssp EEEEEEESSCHHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCChHHHHHHHHHHhhc
Confidence 4689999999999999999999875
No 386
>2pze_A Cystic fibrosis transmembrane conductance regulat; NBD, ABC transporter, CFTR, hydrolase; HET: ATP; 1.70A {Homo sapiens} PDB: 2pzg_A* 2pzf_A* 1ckx_A 1cky_A 1ckw_A 1ckz_A
Probab=93.91 E-value=0.026 Score=53.11 Aligned_cols=25 Identities=20% Similarity=0.222 Sum_probs=21.9
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.||+|+|||||.+.++..+.
T Consensus 35 e~~~i~G~nGsGKSTLl~~l~Gl~~ 59 (229)
T 2pze_A 35 QLLAVAGSTGAGKTSLLMMIMGELE 59 (229)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEECCCCCCHHHHHHHHhCCCc
Confidence 3588999999999999999987753
No 387
>1lw7_A Transcriptional regulator NADR; NMN, NMN adenylyl transferase, ribosylnicotinamide KINA transferase; HET: NAD; 2.90A {Haemophilus influenzae} SCOP: c.26.1.3 c.37.1.1
Probab=93.90 E-value=0.027 Score=56.87 Aligned_cols=27 Identities=19% Similarity=0.306 Sum_probs=23.7
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
..+.|.||+|+|||||++.|+..+...
T Consensus 171 ~k~~IvG~nGsGKSTLlk~L~gl~~~~ 197 (365)
T 1lw7_A 171 KTVAILGGESSGKSVLVNKLAAVFNTT 197 (365)
T ss_dssp EEEEEECCTTSHHHHHHHHHHHHTTCE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 468999999999999999999987543
No 388
>3lv8_A DTMP kinase, thymidylate kinase; structural genomics, in diseases, center for structural genomics of infectious DISE ATP-binding; HET: ADP TMP TYD; 1.80A {Vibrio cholerae o1 biovar eltor} PDB: 3n2i_A*
Probab=93.90 E-value=0.033 Score=52.72 Aligned_cols=25 Identities=20% Similarity=0.327 Sum_probs=22.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.-+.|.||+|+||||+++.|+..+.
T Consensus 28 ~~i~~eG~~GsGKsT~~~~l~~~l~ 52 (236)
T 3lv8_A 28 KFIVIEGLEGAGKSTAIQVVVETLQ 52 (236)
T ss_dssp CEEEEEESTTSCHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHH
Confidence 4588999999999999999998763
No 389
>1z2a_A RAS-related protein RAB-23; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 1.90A {Mus musculus} SCOP: c.37.1.8 PDB: 1z22_A*
Probab=93.87 E-value=0.033 Score=48.46 Aligned_cols=22 Identities=18% Similarity=0.348 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+..+...
T Consensus 7 ~i~v~G~~~~GKssl~~~l~~~ 28 (168)
T 1z2a_A 7 KMVVVGNGAVGKSSMIQRYCKG 28 (168)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999864
No 390
>2olj_A Amino acid ABC transporter; ABC domain, ATPase, hydrolase; HET: ADP; 2.05A {Geobacillus stearothermophilus} PDB: 2olk_A* 2ouk_A 2q0h_A* 3c4j_A* 3c41_J*
Probab=93.86 E-value=0.028 Score=54.16 Aligned_cols=25 Identities=28% Similarity=0.432 Sum_probs=21.8
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..+.|.||+|+|||||.+.|+..+.
T Consensus 51 ei~~liG~NGsGKSTLlk~l~Gl~~ 75 (263)
T 2olj_A 51 EVVVVIGPSGSGKSTFLRCLNLLED 75 (263)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSSC
T ss_pred CEEEEEcCCCCcHHHHHHHHHcCCC
Confidence 3588999999999999999987653
No 391
>3ozx_A RNAse L inhibitor; ATP binding cassette protein, hydrolase, translation; HET: ADP; 2.05A {Sulfolobus solfataricus}
Probab=93.86 E-value=0.22 Score=52.97 Aligned_cols=23 Identities=39% Similarity=0.463 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+.|.||+|+|||||++.|+..+
T Consensus 296 i~~i~G~nGsGKSTLl~~l~Gl~ 318 (538)
T 3ozx_A 296 IIGILGPNGIGKTTFARILVGEI 318 (538)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998764
No 392
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=93.86 E-value=0.057 Score=50.23 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=20.4
Q ss_pred ceEEecCCCCchHH-HHHHHHHH--hCCCeEEEe
Q 010366 270 NMLFYGPPGTGKTM-AARELARK--SGLDYALMT 300 (512)
Q Consensus 270 ~vLL~GppGtGKT~-lA~alA~~--l~~~~~~v~ 300 (512)
-.+++||.|+|||+ +.+.+-+. .+..++.+.
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~k 63 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFK 63 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEE
Confidence 47889999999999 55554332 245555443
No 393
>1ji0_A ABC transporter; ATP binding protein, structural genomics, PSI, protein structure initiative, midwest center for structural genomics, MCSG; HET: ATP; 2.00A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.85 E-value=0.027 Score=53.39 Aligned_cols=24 Identities=25% Similarity=0.321 Sum_probs=21.3
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+.|.||+|+|||||.+.|+..+.
T Consensus 34 ~~~l~G~nGsGKSTLl~~l~Gl~~ 57 (240)
T 1ji0_A 34 IVTLIGANGAGKTTTLSAIAGLVR 57 (240)
T ss_dssp EEEEECSTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCCHHHHHHHHhCCCC
Confidence 588999999999999999987653
No 394
>2ixe_A Antigen peptide transporter 1; ABC ATPase, hydrolase; HET: ATP; 2.0A {Rattus norvegicus} PDB: 2ixg_A* 2ixf_A* 1jj7_A*
Probab=93.85 E-value=0.028 Score=54.36 Aligned_cols=24 Identities=29% Similarity=0.430 Sum_probs=21.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||++.|+..+
T Consensus 46 e~~~i~G~nGsGKSTLlk~l~Gl~ 69 (271)
T 2ixe_A 46 KVTALVGPNGSGKSTVAALLQNLY 69 (271)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 395
>3gfo_A Cobalt import ATP-binding protein CBIO 1; structural genomics, cell membrane, cobalt transport, hydrolase, ION transport; 2.30A {Clostridium perfringens atcc 13124}
Probab=93.83 E-value=0.027 Score=54.64 Aligned_cols=23 Identities=17% Similarity=0.202 Sum_probs=20.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|+|||||++.|+..+
T Consensus 36 ~~~iiGpnGsGKSTLl~~l~Gl~ 58 (275)
T 3gfo_A 36 VTAILGGNGVGKSTLFQNFNGIL 58 (275)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHHcCC
Confidence 58999999999999999998765
No 396
>1z47_A CYSA, putative ABC-transporter ATP-binding protein; alpha/beta motif, beta sandwich, ligand binding protein; 1.90A {Alicyclobacillus acidocaldarius}
Probab=93.80 E-value=0.029 Score=56.51 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 43 ~~~llGpnGsGKSTLLr~iaGl~ 65 (355)
T 1z47_A 43 MVGLLGPSGSGKTTILRLIAGLE 65 (355)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999765
No 397
>1u8z_A RAS-related protein RAL-A; GNP, GTP, GMPPNP, GPPNHP, GDP, GTPase, signaling protein; HET: GDP; 1.50A {Saguinus oedipus} SCOP: c.37.1.8 PDB: 1u8y_A* 1u90_A* 1uad_A* 1zc3_A* 1zc4_A* 2kwi_A* 2ke5_A*
Probab=93.77 E-value=0.036 Score=48.02 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|+..+...
T Consensus 5 ~~i~v~G~~~~GKssl~~~l~~~ 27 (168)
T 1u8z_A 5 HKVIMVGSGGVGKSALTLQFMYD 27 (168)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999764
No 398
>2qi9_C Vitamin B12 import ATP-binding protein BTUD; inner membrane, membrane, transmembrane, transport, ATP- binding, hydrolase, nucleotide-binding, periplasm; HET: 1PE; 2.60A {Escherichia coli} PDB: 1l7v_C* 4dbl_C
Probab=93.75 E-value=0.029 Score=53.59 Aligned_cols=24 Identities=25% Similarity=0.450 Sum_probs=21.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||.+.++..+
T Consensus 27 e~~~liG~NGsGKSTLlk~l~Gl~ 50 (249)
T 2qi9_C 27 EILHLVGPNGAGKSTLLARMAGMT 50 (249)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999998765
No 399
>1vpl_A ABC transporter, ATP-binding protein; TM0544, structural GENO joint center for structural genomics, JCSG, protein structu initiative, PSI; 2.10A {Thermotoga maritima} SCOP: c.37.1.12
Probab=93.74 E-value=0.03 Score=53.67 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||.+.|+...
T Consensus 42 ei~~l~G~NGsGKSTLlk~l~Gl~ 65 (256)
T 1vpl_A 42 EIFGLIGPNGAGKTTTLRIISTLI 65 (256)
T ss_dssp CEEEEECCTTSSHHHHHHHHTTSS
T ss_pred cEEEEECCCCCCHHHHHHHHhcCC
Confidence 358899999999999999998765
No 400
>4g1u_C Hemin import ATP-binding protein HMUV; membrane transporter, type II ABC importer, HMUT, plasma MEM transport protein-hydrolase complex; 3.01A {Yersinia pestis}
Probab=93.73 E-value=0.029 Score=54.15 Aligned_cols=24 Identities=29% Similarity=0.404 Sum_probs=21.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||++.++..+
T Consensus 38 e~~~liG~nGsGKSTLl~~l~Gl~ 61 (266)
T 4g1u_C 38 EMVAIIGPNGAGKSTLLRLLTGYL 61 (266)
T ss_dssp CEEEEECCTTSCHHHHHHHHTSSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358899999999999999998765
No 401
>2f7s_A C25KG, RAS-related protein RAB-27B; G-protein, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 2.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 2iez_A*
Probab=93.73 E-value=0.14 Score=46.93 Aligned_cols=22 Identities=27% Similarity=0.397 Sum_probs=19.9
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.|+|.|++|+|||+|+..+...
T Consensus 27 ki~vvG~~~~GKSsLi~~l~~~ 48 (217)
T 2f7s_A 27 KLLALGDSGVGKTTFLYRYTDN 48 (217)
T ss_dssp EEEEESCTTSSHHHHHHHHHCS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999753
No 402
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=93.72 E-value=0.041 Score=51.64 Aligned_cols=26 Identities=31% Similarity=0.293 Sum_probs=22.5
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGL 294 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~ 294 (512)
.-+.|.|++|+||||+++.|+..++.
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l~~ 47 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYLSE 47 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHhh
Confidence 45888999999999999999987654
No 403
>2wji_A Ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GNP; 1.90A {Methanocaldococcus jannaschii} PDB: 2wjj_A* 2wjh_A*
Probab=93.70 E-value=0.034 Score=48.84 Aligned_cols=21 Identities=24% Similarity=0.456 Sum_probs=19.5
Q ss_pred ceEEecCCCCchHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~ 290 (512)
.+.|.|+||+|||+|.+.++.
T Consensus 5 ~v~lvG~~gvGKStL~~~l~~ 25 (165)
T 2wji_A 5 EIALIGNPNVGKSTIFNALTG 25 (165)
T ss_dssp EEEEECSTTSSHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 589999999999999999975
No 404
>2ce2_X GTPase HRAS; signaling protein, guanine nucleotide binding protein, fluor membrane, lipoprotein, palmitate, prenylation; HET: GDP XY2; 1.0A {Homo sapiens} PDB: 2cl0_X* 2cl6_X* 2cl7_X* 2clc_X* 2evw_X* 2cld_X* 1aa9_A* 1ioz_A* 1q21_A* 6q21_A* 3k9l_A* 3k9n_A* 1ctq_A* 1bkd_R 1crp_A* 1crq_A* 1crr_A* 121p_A* 1gnp_A* 1gnq_A* ...
Probab=93.70 E-value=0.034 Score=48.03 Aligned_cols=22 Identities=23% Similarity=0.472 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssl~~~l~~~ 26 (166)
T 2ce2_X 5 KLVVVGAGGVGKSALTIQLIQN 26 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhC
Confidence 5899999999999999999765
No 405
>2yyz_A Sugar ABC transporter, ATP-binding protein; sugar transport, alpha and beta proteins (A/B) TM0421, structural genomics, NPPSFA; 2.11A {Thermotoga maritima}
Probab=93.70 E-value=0.036 Score=55.92 Aligned_cols=23 Identities=35% Similarity=0.411 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (359)
T 2yyz_A 31 FVALLGPSGCGKTTTLLMLAGIY 53 (359)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHCCC
Confidence 58899999999999999999765
No 406
>2zej_A Dardarin, leucine-rich repeat kinase 2; parkinson'S disease, LRRK2, ROC, GTPase, ROCO, ATP-B disease mutation, GTP-binding, GTPase activation; HET: GDP; 2.00A {Homo sapiens} PDB: 3d6t_B*
Probab=93.68 E-value=0.028 Score=50.37 Aligned_cols=21 Identities=29% Similarity=0.615 Sum_probs=19.4
Q ss_pred ceEEecCCCCchHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~ 290 (512)
.++|.|+||+|||+|++.++.
T Consensus 4 kv~ivG~~gvGKStLl~~l~~ 24 (184)
T 2zej_A 4 KLMIVGNTGSGKTTLLQQLMK 24 (184)
T ss_dssp EEEEESCTTSSHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHhc
Confidence 589999999999999999975
No 407
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=93.68 E-value=0.072 Score=50.50 Aligned_cols=36 Identities=25% Similarity=0.310 Sum_probs=28.0
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHh--CCCeEEEeC
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKS--GLDYALMTG 301 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l--~~~~~~v~~ 301 (512)
.....+++.|.+|+||||++..+|..+ +..+..++.
T Consensus 12 ~~~~i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd~ 49 (262)
T 1yrb_A 12 MASMIVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVNL 49 (262)
T ss_dssp CCCEEEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEEC
T ss_pred cceEEEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEeC
Confidence 334568999999999999999998776 556666653
No 408
>2it1_A 362AA long hypothetical maltose/maltodextrin transport ATP-binding protein; structural genomics, NPPSFA; 1.94A {Pyrococcus horikoshii}
Probab=93.68 E-value=0.036 Score=55.97 Aligned_cols=23 Identities=30% Similarity=0.455 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (362)
T 2it1_A 31 FMALLGPSGSGKSTLLYTIAGIY 53 (362)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCchHHHHHHHHhcCC
Confidence 57899999999999999999765
No 409
>2yz2_A Putative ABC transporter ATP-binding protein TM_0; cobalt transport, TM02 hydrolase, inner membrane, membrane, nucleotide-binding; 2.30A {Thermotoga maritima}
Probab=93.66 E-value=0.032 Score=53.80 Aligned_cols=24 Identities=25% Similarity=0.329 Sum_probs=21.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||.+.|+..+
T Consensus 34 e~~~liG~nGsGKSTLl~~i~Gl~ 57 (266)
T 2yz2_A 34 ECLLVAGNTGSGKSTLLQIVAGLI 57 (266)
T ss_dssp CEEEEECSTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhCCC
Confidence 358899999999999999998764
No 410
>3rlf_A Maltose/maltodextrin import ATP-binding protein M; integral membrane protein, ATPase, ABC transporter, membrane transmembrane; HET: UMQ MAL PGV ANP; 2.20A {Escherichia coli} PDB: 1q1e_A 1q12_A* 2awo_A* 3fh6_A 3puv_A* 3puw_A* 3pux_A* 3puy_A* 3puz_A* 3pv0_A* 2awn_A* 2r6g_A* 1q1b_A
Probab=93.65 E-value=0.036 Score=56.24 Aligned_cols=23 Identities=35% Similarity=0.583 Sum_probs=21.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 31 ~~~llGpsGsGKSTLLr~iaGl~ 53 (381)
T 3rlf_A 31 FVVFVGPSGCGKSTLLRMIAGLE 53 (381)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEEcCCCchHHHHHHHHHcCC
Confidence 58899999999999999999765
No 411
>4dcu_A GTP-binding protein ENGA; GTPase, GDP, protein binding, hydrolase; HET: GDP; 2.00A {Bacillus subtilis} PDB: 4dct_A* 4dcs_A* 4dcv_A* 2hjg_A*
Probab=93.62 E-value=0.11 Score=53.93 Aligned_cols=22 Identities=23% Similarity=0.356 Sum_probs=19.6
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
..|+|.|+||+|||+|...|..
T Consensus 24 ~~V~lvG~~nvGKSTL~n~l~~ 45 (456)
T 4dcu_A 24 PVVAIVGRPNVGKSTIFNRIAG 45 (456)
T ss_dssp CEEEEECSSSSSHHHHHHHHEE
T ss_pred CEEEEECCCCCcHHHHHHHHhC
Confidence 3699999999999999999853
No 412
>1ek0_A Protein (GTP-binding protein YPT51); vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase; HET: MHO GNP GDP; 1.48A {Saccharomyces cerevisiae} SCOP: c.37.1.8
Probab=93.59 E-value=0.039 Score=47.98 Aligned_cols=22 Identities=14% Similarity=0.371 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+.++...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1ek0_A 5 KLVLLGEAAVGKSSIVLRFVSN 26 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999999754
No 413
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=93.58 E-value=0.19 Score=54.75 Aligned_cols=43 Identities=12% Similarity=0.179 Sum_probs=25.5
Q ss_pred CcEEEEccchhhhhhcccCCCCHHHHHHHHHHHHHcCCCCCCEEEEEeeCCC
Q 010366 328 GLLLFIDEADAFLCERNKTYMSEAQRSALNALLFRTGDQSKDIVLALATNRP 379 (512)
Q Consensus 328 ~~vl~lDEid~l~~~~~~~~~~~~~~~~l~~ll~~~~~~~~~viiI~ttN~~ 379 (512)
..+|+|||++.+ +......+..++..+.......+|++++..+
T Consensus 319 l~~lVlDEAH~l---------~~~~~~~l~~Il~~l~~~~~~llil~SAT~~ 361 (666)
T 3o8b_A 319 YDIIICDECHST---------DSTTILGIGTVLDQAETAGARLVVLATATPP 361 (666)
T ss_dssp CSEEEETTTTCC---------SHHHHHHHHHHHHHTTTTTCSEEEEEESSCT
T ss_pred ccEEEEccchhc---------CccHHHHHHHHHHhhhhcCCceEEEECCCCC
Confidence 578999999764 2334444666666665444444555554443
No 414
>2ihy_A ABC transporter, ATP-binding protein; ATPase, ABC cassette, hydrolase; HET: MSE; 1.90A {Staphylococcus aureus}
Probab=93.57 E-value=0.032 Score=54.25 Aligned_cols=24 Identities=29% Similarity=0.411 Sum_probs=21.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
.+.|.||+|+|||||.+.|+..+.
T Consensus 49 ~~~liG~NGsGKSTLlk~l~Gl~~ 72 (279)
T 2ihy_A 49 KWILYGLNGAGKTTLLNILNAYEP 72 (279)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSSC
T ss_pred EEEEECCCCCcHHHHHHHHhCCCC
Confidence 588999999999999999987653
No 415
>1v43_A Sugar-binding transport ATP-binding protein; ATPase, active transport, sugar uptake and regulation, transport protein; 2.20A {Pyrococcus horikoshii} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 1vci_A*
Probab=93.57 E-value=0.038 Score=55.97 Aligned_cols=23 Identities=35% Similarity=0.585 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 39 ~~~llGpnGsGKSTLLr~iaGl~ 61 (372)
T 1v43_A 39 FLVLLGPSGCGKTTTLRMIAGLE 61 (372)
T ss_dssp EEEEECCTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCChHHHHHHHHHcCC
Confidence 58899999999999999999765
No 416
>1g29_1 MALK, maltose transport protein MALK; ATPase, active transport, maltose uptake and regulation, sugar binding protein; 1.90A {Thermococcus litoralis} SCOP: b.40.6.3 b.40.6.3 c.37.1.12 PDB: 2d62_A
Probab=93.55 E-value=0.033 Score=56.44 Aligned_cols=23 Identities=39% Similarity=0.621 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 31 ~~~llGpnGsGKSTLLr~iaGl~ 53 (372)
T 1g29_1 31 FMILLGPSGCGKTTTLRMIAGLE 53 (372)
T ss_dssp EEEEECSTTSSHHHHHHHHHTSS
T ss_pred EEEEECCCCcHHHHHHHHHHcCC
Confidence 58899999999999999999765
No 417
>1z0j_A RAB-22, RAS-related protein RAB-22A; RAB GTPase, RAB22 GTPase, rabenosyn, endosomal trafficking; HET: GTP; 1.32A {Mus musculus} SCOP: c.37.1.8 PDB: 1yvd_A*
Probab=93.51 E-value=0.041 Score=47.94 Aligned_cols=23 Identities=22% Similarity=0.406 Sum_probs=20.7
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+++.|++|+|||++++.+....
T Consensus 8 ~i~v~G~~~~GKSsli~~l~~~~ 30 (170)
T 1z0j_A 8 KVCLLGDTGVGKSSIMWRFVEDS 30 (170)
T ss_dssp EEEEECCTTSSHHHHHHHHHHSC
T ss_pred EEEEECcCCCCHHHHHHHHHcCC
Confidence 69999999999999999997653
No 418
>2nq2_C Hypothetical ABC transporter ATP-binding protein HI1470; putative iron chelatin ABC transporter, nucleotide binding domain; 2.40A {Haemophilus influenzae}
Probab=93.51 E-value=0.033 Score=53.30 Aligned_cols=23 Identities=22% Similarity=0.222 Sum_probs=21.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+.|.||+|+|||||.+.++..+
T Consensus 33 ~~~l~G~nGsGKSTLl~~l~Gl~ 55 (253)
T 2nq2_C 33 ILAVLGQNGCGKSTLLDLLLGIH 55 (253)
T ss_dssp EEEEECCSSSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 419
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=93.50 E-value=0.095 Score=57.82 Aligned_cols=18 Identities=39% Similarity=0.578 Sum_probs=15.9
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
.+++++||+|+|||+.+-
T Consensus 40 ~~~lv~apTGsGKT~~~~ 57 (720)
T 2zj8_A 40 KNALISIPTASGKTLIAE 57 (720)
T ss_dssp CEEEEECCGGGCHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 479999999999998873
No 420
>3con_A GTPase NRAS; structural genomics consortium, SGC, GDP, oncogene, disease mutation, golgi apparatus, GTP-binding, lipoprotein membrane, methylation; HET: GDP; 1.65A {Homo sapiens} PDB: 2pmx_A* 3gft_A* 4q21_A*
Probab=93.49 E-value=0.033 Score=49.84 Aligned_cols=23 Identities=22% Similarity=0.426 Sum_probs=20.8
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
-.+++.|++|+|||+|+..++..
T Consensus 22 ~ki~vvG~~~~GKSsli~~l~~~ 44 (190)
T 3con_A 22 YKLVVVGAGGVGKSALTIQLIQN 44 (190)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999865
No 421
>2gj8_A MNME, tRNA modification GTPase TRME; G-domain dimer, alpha-beta-sandwich, hydrolase; HET: GDP; 1.70A {Escherichia coli BL21} SCOP: c.37.1.8 PDB: 2gj9_A* 2gja_A* 1rfl_A
Probab=93.49 E-value=0.036 Score=49.18 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.6
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+.|.|+||+|||+|.+.++..
T Consensus 5 ~ki~ivG~~g~GKStLl~~l~~~ 27 (172)
T 2gj8_A 5 MKVVIAGRPNAGKSSLLNALAGR 27 (172)
T ss_dssp EEEEEEESTTSSHHHHHHHHHTS
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 46999999999999999999864
No 422
>1wms_A RAB-9, RAB9, RAS-related protein RAB-9A; GTPase, protein transport; HET: GDP; 1.25A {Homo sapiens} SCOP: c.37.1.8 PDB: 1s8f_A* 1yzl_A* 2ocb_A*
Probab=93.48 E-value=0.041 Score=48.42 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.5
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKSsli~~l~~~ 30 (177)
T 1wms_A 8 FKVILLGDGGVGKSSLMNRYVTN 30 (177)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 423
>2nzj_A GTP-binding protein REM 1; GDP/GTP binding, GTP hydrolysis, RAD and GEM like GTP protein 1, structural genomics; HET: GDP; 2.50A {Homo sapiens}
Probab=93.46 E-value=0.039 Score=48.37 Aligned_cols=22 Identities=36% Similarity=0.554 Sum_probs=19.7
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
-.++|.|+||+|||+|+..+..
T Consensus 5 ~ki~i~G~~~vGKSsl~~~l~~ 26 (175)
T 2nzj_A 5 YRVVLLGDPGVGKTSLASLFAG 26 (175)
T ss_dssp EEEEEECCTTSSHHHHHHHHHC
T ss_pred EEEEEECCCCccHHHHHHHHhc
Confidence 3699999999999999999964
No 424
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=93.46 E-value=0.14 Score=59.24 Aligned_cols=20 Identities=25% Similarity=0.310 Sum_probs=16.7
Q ss_pred cceEEecCCCCchHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAREL 288 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~al 288 (512)
.++|++||+|+|||..+-..
T Consensus 200 ~dvLV~ApTGSGKTlva~l~ 219 (1108)
T 3l9o_A 200 ESVLVSAHTSAGKTVVAEYA 219 (1108)
T ss_dssp CCEEEECCSSSHHHHHHHHH
T ss_pred CCEEEECCCCCChHHHHHHH
Confidence 46999999999999876544
No 425
>1ky3_A GTP-binding protein YPT7P; vesicular traffic, GTP hydrolysis, YPT/RAB protein, endocytosis, hydrolase, endocytosis/exocytosis complex; HET: GDP; 1.35A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1ky2_A*
Probab=93.40 E-value=0.043 Score=48.40 Aligned_cols=23 Identities=22% Similarity=0.404 Sum_probs=20.6
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|+..+...
T Consensus 9 ~~i~v~G~~~~GKSsli~~l~~~ 31 (182)
T 1ky3_A 9 LKVIILGDSGVGKTSLMHRYVND 31 (182)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999764
No 426
>1g16_A RAS-related protein SEC4; G protein RAB, signaling protein, endocytosis/exocytosis complex; HET: GDP; 1.80A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 1g17_A* 2ocy_C 2eqb_A
Probab=93.38 E-value=0.041 Score=47.92 Aligned_cols=22 Identities=23% Similarity=0.469 Sum_probs=19.9
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (170)
T 1g16_A 5 KILLIGDSGVGKSCLLVRFVED 26 (170)
T ss_dssp EEEEEESTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHhC
Confidence 6999999999999999999754
No 427
>1z08_A RAS-related protein RAB-21; RAB GTPase, vesicular trafficking, protein transport; HET: GNP; 1.80A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ot3_B 1yzu_A* 1z0i_A 1yzt_A*
Probab=93.38 E-value=0.044 Score=47.79 Aligned_cols=22 Identities=18% Similarity=0.280 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+..+...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1z08_A 8 KVVLLGEGCVGKTSLVLRYCEN 29 (170)
T ss_dssp EEEEECCTTSCHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHHcC
Confidence 6999999999999999999865
No 428
>3d31_A Sulfate/molybdate ABC transporter, ATP-binding protein; ATP-binding, nucleotide-binding, membrane, transmembrane, transport protein; 3.00A {Methanosarcina acetivorans} SCOP: b.40.6.3 c.37.1.12
Probab=93.36 E-value=0.032 Score=56.08 Aligned_cols=23 Identities=30% Similarity=0.499 Sum_probs=20.9
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 28 ~~~llGpnGsGKSTLLr~iaGl~ 50 (348)
T 3d31_A 28 YFVILGPTGAGKTLFLELIAGFH 50 (348)
T ss_dssp EEEEECCCTHHHHHHHHHHHTSS
T ss_pred EEEEECCCCccHHHHHHHHHcCC
Confidence 58899999999999999999765
No 429
>4dhe_A Probable GTP-binding protein ENGB; melioidosis, RAS-like GTPase, cell division, cell cycle, SEP GTP-binding; 2.20A {Burkholderia thailandensis}
Probab=93.35 E-value=0.24 Score=45.36 Aligned_cols=23 Identities=26% Similarity=0.439 Sum_probs=20.5
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+.++...
T Consensus 30 ~~i~v~G~~~~GKSslin~l~~~ 52 (223)
T 4dhe_A 30 PEIAFAGRSNAGKSTAINVLCNQ 52 (223)
T ss_dssp CEEEEEESCHHHHHHHHHHHTTC
T ss_pred CEEEEEcCCCCCHHHHHHHHhCC
Confidence 37999999999999999999754
No 430
>1c1y_A RAS-related protein RAP-1A; GTP-binding proteins, protein-protein complex, effectors, signaling protein; HET: GTP; 1.90A {Homo sapiens} SCOP: c.37.1.8 PDB: 3kuc_A* 1gua_A* 3cf6_R* 3brw_D*
Probab=93.28 E-value=0.047 Score=47.35 Aligned_cols=22 Identities=18% Similarity=0.451 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+.++...
T Consensus 5 ki~v~G~~~~GKssli~~l~~~ 26 (167)
T 1c1y_A 5 KLVVLGSGGVGKSALTVQFVQG 26 (167)
T ss_dssp EEEEECSTTSSHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 431
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=93.26 E-value=0.044 Score=50.51 Aligned_cols=25 Identities=24% Similarity=0.391 Sum_probs=22.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++|.|++|+|||+++..++..+.
T Consensus 31 ~~i~i~G~~g~GKTTl~~~l~~~~~ 55 (221)
T 2wsm_A 31 VAVNIMGAIGSGKTLLIERTIERIG 55 (221)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 3799999999999999999988764
No 432
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=93.23 E-value=0.044 Score=51.35 Aligned_cols=28 Identities=25% Similarity=0.292 Sum_probs=23.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhCCCeE
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSGLDYA 297 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~~~~~ 297 (512)
.-+.|.||.|+||||+++.|+.. +..+.
T Consensus 21 ~~i~i~G~~GsGKSTl~~~L~~~-~g~v~ 48 (230)
T 2vp4_A 21 FTVLIEGNIGSGKTTYLNHFEKY-KNDIC 48 (230)
T ss_dssp EEEEEECSTTSCHHHHHHTTGGG-TTTEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhc-cCCeE
Confidence 45889999999999999999887 44443
No 433
>2pjz_A Hypothetical protein ST1066; ATP binding protein, structural genomics, NPPSFA; 1.90A {Sulfolobus tokodaii}
Probab=93.22 E-value=0.035 Score=53.45 Aligned_cols=23 Identities=30% Similarity=0.585 Sum_probs=21.0
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
.+.|.||+|+|||||.+.++..+
T Consensus 32 ~~~i~G~NGsGKSTLlk~l~Gl~ 54 (263)
T 2pjz_A 32 KVIILGPNGSGKTTLLRAISGLL 54 (263)
T ss_dssp EEEEECCTTSSHHHHHHHHTTSS
T ss_pred EEEEECCCCCCHHHHHHHHhCCC
Confidence 58899999999999999998765
No 434
>1r8s_A ADP-ribosylation factor 1; protein transport/exchange factor, protein transport-exchang complex; HET: GDP; 1.46A {Bos taurus} SCOP: c.37.1.8 PDB: 1re0_A* 1s9d_A* 1u81_A* 1r8q_A* 1rrf_A* 1rrg_A* 1hur_A* 1o3y_A* 1j2j_A* 2j59_A* 1mr3_F* 2k5u_A* 3lrp_A* 3tjz_A* 3rd1_A* 2ksq_A* 2a5d_A* 2a5f_A* 2j5x_A* 1e0s_A* ...
Probab=93.22 E-value=0.048 Score=47.25 Aligned_cols=22 Identities=27% Similarity=0.326 Sum_probs=19.8
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+..+...
T Consensus 2 ki~~~G~~~~GKssl~~~l~~~ 23 (164)
T 1r8s_A 2 RILMVGLDAAGKTTILYKLKLG 23 (164)
T ss_dssp EEEEECSTTSSHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 4899999999999999999764
No 435
>3q85_A GTP-binding protein REM 2; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.76A {Mus musculus} SCOP: c.37.1.8 PDB: 4aii_A*
Probab=93.22 E-value=0.045 Score=47.71 Aligned_cols=20 Identities=25% Similarity=0.542 Sum_probs=18.6
Q ss_pred ceEEecCCCCchHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA 289 (512)
.++|.|+||+|||+|+..+.
T Consensus 4 ki~ivG~~~~GKSsli~~l~ 23 (169)
T 3q85_A 4 KVMLVGESGVGKSTLAGTFG 23 (169)
T ss_dssp EEEEECSTTSSHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 58999999999999999985
No 436
>1r2q_A RAS-related protein RAB-5A; GTPase, GNP, atomic resolution, protein transport; HET: GNP; 1.05A {Homo sapiens} SCOP: c.37.1.8 PDB: 1n6h_A* 1tu4_A* 1tu3_A* 1n6k_A* 1n6i_A* 1n6l_A* 1n6o_A* 1n6p_A* 1n6n_A* 1n6r_A* 3mjh_A* 1z0d_A* 1huq_A* 2hei_A* 1z07_A*
Probab=93.21 E-value=0.049 Score=47.34 Aligned_cols=22 Identities=14% Similarity=0.382 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+.++...
T Consensus 8 ~i~v~G~~~~GKssli~~l~~~ 29 (170)
T 1r2q_A 8 KLVLLGESAVGKSSLVLRFVKG 29 (170)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999863
No 437
>2x2e_A Dynamin-1; nitration, hydrolase, membrane fission, nucleotide-binding, endocytosis, motor protein; HET: GDP; 2.00A {Homo sapiens} PDB: 2x2f_A* 3zyc_A* 3zys_A
Probab=93.21 E-value=0.4 Score=47.94 Aligned_cols=22 Identities=14% Similarity=0.261 Sum_probs=19.8
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
..+.++|+||+|||++..+|..
T Consensus 32 ~~I~vvG~~~~GKSSLln~L~g 53 (353)
T 2x2e_A 32 PQIAVVGGQSAGKSSVLENFVG 53 (353)
T ss_dssp CEEEEECBTTSSHHHHHHTTTT
T ss_pred CeEEEECCCCCCHHHHHHHHhC
Confidence 3799999999999999999864
No 438
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=93.20 E-value=0.05 Score=47.49 Aligned_cols=24 Identities=21% Similarity=0.217 Sum_probs=21.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+-.+|+||.|+|||++..+|.-.+
T Consensus 24 g~~~I~G~NGsGKStil~Ai~~~l 47 (149)
T 1f2t_A 24 GINLIIGQNGSGKSSLLDAILVGL 47 (149)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHH
Confidence 358999999999999999998665
No 439
>4tmk_A Protein (thymidylate kinase); ATP:DTMP phosphotransferase, transferase; HET: T5A; 1.98A {Escherichia coli} SCOP: c.37.1.1 PDB: 5tmp_A*
Probab=93.20 E-value=0.046 Score=50.90 Aligned_cols=23 Identities=26% Similarity=0.355 Sum_probs=21.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-|.|.|++|+||||.++.|+..+
T Consensus 5 ~i~~eG~~gsGKsT~~~~l~~~l 27 (213)
T 4tmk_A 5 YIVIEGLEGAGKTTARNVVVETL 27 (213)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 47889999999999999999887
No 440
>2erx_A GTP-binding protein DI-RAS2; GTP hydrolysis, transport protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8
Probab=93.19 E-value=0.046 Score=47.61 Aligned_cols=22 Identities=18% Similarity=0.433 Sum_probs=19.9
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+++..+...
T Consensus 5 ~i~v~G~~~~GKssli~~l~~~ 26 (172)
T 2erx_A 5 RVAVFGAGGVGKSSLVLRFVKG 26 (172)
T ss_dssp EEEEECCTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 5999999999999999999753
No 441
>2wjg_A FEOB, ferrous iron transport protein B homolog; membrane G-proteins, cell membrane, ION transport, transmembrane; HET: GDP; 2.20A {Methanocaldococcus jannaschii}
Probab=93.14 E-value=0.046 Score=48.72 Aligned_cols=23 Identities=22% Similarity=0.408 Sum_probs=20.6
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|++.++..
T Consensus 8 ~~i~lvG~~gvGKStL~~~l~~~ 30 (188)
T 2wjg_A 8 YEIALIGNPNVGKSTIFNALTGE 30 (188)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 36999999999999999999863
No 442
>3bc1_A RAS-related protein RAB-27A; RAB27, GTPase, RAB, signaling protein, GDPNP, SLP2A, exophil GTP-binding, lipoprotein, membrane, methylation; HET: GNP; 1.80A {Mus musculus} PDB: 2iey_A* 2if0_A* 2zet_A*
Probab=93.14 E-value=0.049 Score=48.49 Aligned_cols=23 Identities=26% Similarity=0.342 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+..+...
T Consensus 12 ~ki~v~G~~~~GKSsli~~l~~~ 34 (195)
T 3bc1_A 12 IKFLALGDSGVGKTSVLYQYTDG 34 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999864
No 443
>3q72_A GTP-binding protein RAD; G-domain, CAV2 beta, signaling protein; HET: GNP; 1.66A {Homo sapiens} SCOP: c.37.1.8 PDB: 3q7p_A* 3q7q_A* 2gjs_A* 2dpx_A*
Probab=93.11 E-value=0.048 Score=47.39 Aligned_cols=20 Identities=40% Similarity=0.763 Sum_probs=18.6
Q ss_pred ceEEecCCCCchHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELA 289 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA 289 (512)
.++|.|+||+|||+|++.+.
T Consensus 4 ki~~vG~~~~GKSsli~~l~ 23 (166)
T 3q72_A 4 KVLLLGAPGVGKSALARIFG 23 (166)
T ss_dssp EEEEEESTTSSHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHc
Confidence 59999999999999999985
No 444
>1wf3_A GTP-binding protein; GTPase, riken structural genomics/prote initiative, RSGI, structural genomics, hydrolase; HET: GNP; 1.88A {Thermus thermophilus} SCOP: c.37.1.8 d.52.3.1
Probab=93.11 E-value=0.39 Score=46.92 Aligned_cols=22 Identities=23% Similarity=0.317 Sum_probs=19.8
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+.|.|.||+|||+|..++...
T Consensus 9 ~V~ivG~~nvGKSTLln~l~g~ 30 (301)
T 1wf3_A 9 FVAIVGKPNVGKSTLLNNLLGV 30 (301)
T ss_dssp EEEEECSTTSSHHHHHHHHHTS
T ss_pred EEEEECCCCCCHHHHHHHHhCC
Confidence 5899999999999999999754
No 445
>3gd7_A Fusion complex of cystic fibrosis transmembrane conductance regulator, residues 1193-1427...; CFTR, ABC transporter, nucleotide binding domain, NBD; HET: B44; 2.70A {Homo sapiens}
Probab=93.11 E-value=0.047 Score=55.69 Aligned_cols=24 Identities=21% Similarity=0.339 Sum_probs=21.1
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
.-+.|.||+|||||||.+.|+...
T Consensus 48 e~~~llGpsGsGKSTLLr~iaGl~ 71 (390)
T 3gd7_A 48 QRVGLLGRTGSGKSTLLSAFLRLL 71 (390)
T ss_dssp CEEEEEESTTSSHHHHHHHHHTCS
T ss_pred CEEEEECCCCChHHHHHHHHhCCC
Confidence 358999999999999999998753
No 446
>2lkc_A Translation initiation factor IF-2; NMR {Geobacillus stearothermophilus} PDB: 2lkd_A*
Probab=93.09 E-value=0.058 Score=47.47 Aligned_cols=22 Identities=18% Similarity=0.203 Sum_probs=20.1
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
..+++.|++|+|||+|+..+..
T Consensus 9 ~~i~v~G~~~~GKssl~~~l~~ 30 (178)
T 2lkc_A 9 PVVTIMGHVDHGKTTLLDAIRH 30 (178)
T ss_dssp CEEEEESCTTTTHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHhC
Confidence 4799999999999999999975
No 447
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=93.07 E-value=0.045 Score=61.17 Aligned_cols=22 Identities=41% Similarity=0.703 Sum_probs=18.6
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.||||||||+++..++..
T Consensus 373 ~~lI~GppGTGKT~ti~~~i~~ 394 (800)
T 2wjy_A 373 LSLIQGPPGTGKTVTSATIVYH 394 (800)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHHHH
Confidence 5899999999999987777554
No 448
>4f4c_A Multidrug resistance protein PGP-1; ABC transporter, ATPase, multi-drug transporter, exporter, A binding, hydrolase,protein transport; HET: NDG NAG BMA MAN 0SA; 3.40A {Caenorhabditis elegans}
Probab=93.06 E-value=0.18 Score=59.62 Aligned_cols=27 Identities=22% Similarity=0.268 Sum_probs=23.3
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHhC
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
|...+.|+||+|+||||+++.|...+.
T Consensus 443 ~G~~vaivG~sGsGKSTll~ll~~~~~ 469 (1321)
T 4f4c_A 443 AGQTVALVGSSGCGKSTIISLLLRYYD 469 (1321)
T ss_dssp TTCEEEEEECSSSCHHHHHHHHTTSSC
T ss_pred CCcEEEEEecCCCcHHHHHHHhccccc
Confidence 445699999999999999999988764
No 449
>1upt_A ARL1, ADP-ribosylation factor-like protein 1; hydrolase/protein-binding, complex (GTPase/golgin), golgin-245, GRIP, golgin, GTPase, G-protein; HET: GTP; 1.7A {Homo sapiens} SCOP: c.37.1.8 PDB: 1r4a_A*
Probab=93.01 E-value=0.059 Score=46.99 Aligned_cols=23 Identities=30% Similarity=0.377 Sum_probs=20.5
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|+..+...
T Consensus 8 ~~i~v~G~~~~GKssl~~~l~~~ 30 (171)
T 1upt_A 8 MRILILGLDGAGKTTILYRLQVG 30 (171)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 46999999999999999999753
No 450
>1z0f_A RAB14, member RAS oncogene family; RAB GTPase, vesicular trafficking, protein transport; HET: GDP; 2.15A {Homo sapiens} SCOP: c.37.1.8 PDB: 2aed_A* 4drz_A*
Probab=92.93 E-value=0.056 Score=47.45 Aligned_cols=23 Identities=22% Similarity=0.394 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKSsli~~l~~~ 38 (179)
T 1z0f_A 16 FKYIIIGDMGVGKSCLLHQFTEK 38 (179)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999765
No 451
>2y8e_A RAB-protein 6, GH09086P, RAB6; hydrolase, nucleotide binding, GTP binding; HET: GNP; 1.39A {Drosophila melanogaster} PDB: 3cwz_A* 1yzq_A* 2gil_A* 2e9s_A* 2fe4_A* 2ffq_A* 1d5c_A*
Probab=92.93 E-value=0.052 Score=47.68 Aligned_cols=23 Identities=22% Similarity=0.358 Sum_probs=20.4
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
-.++|.|++|+|||+|+..+...
T Consensus 15 ~~i~v~G~~~~GKssli~~l~~~ 37 (179)
T 2y8e_A 15 FKLVFLGEQSVGKTSLITRFMYD 37 (179)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999754
No 452
>2a9k_A RAS-related protein RAL-A; bacterial ADP-ribosyltransferase, RAL, RHO, GD binding; HET: GDP NAD; 1.73A {Homo sapiens} SCOP: c.37.1.8 PDB: 2a78_A*
Probab=92.92 E-value=0.052 Score=48.04 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.8
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+..+...
T Consensus 19 ~ki~v~G~~~~GKSsli~~l~~~ 41 (187)
T 2a9k_A 19 HKVIMVGSGGVGKSALTLQFMYD 41 (187)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHhhC
Confidence 47999999999999999999864
No 453
>3kkq_A RAS-related protein M-RAS; GTP-binding, GTPase, signaling protein; HET: GDP; 1.20A {Mus musculus} SCOP: c.37.1.8 PDB: 3kkp_A* 3kko_A* 3pit_A* 3pir_A* 1x1r_A* 1x1s_A*
Probab=92.92 E-value=0.059 Score=47.75 Aligned_cols=25 Identities=24% Similarity=0.436 Sum_probs=21.5
Q ss_pred CCcceEEecCCCCchHHHHHHHHHH
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~ 291 (512)
+...++|.|++|+|||+|+..+...
T Consensus 17 ~~~ki~v~G~~~~GKSsl~~~l~~~ 41 (183)
T 3kkq_A 17 PTYKLVVVGDGGVGKSALTIQFFQK 41 (183)
T ss_dssp CEEEEEEECSTTSSHHHHHHHHHHS
T ss_pred CceEEEEECCCCCCHHHHHHHHHhC
Confidence 3347999999999999999999865
No 454
>2fn4_A P23, RAS-related protein R-RAS; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GDP; 1.65A {Homo sapiens} SCOP: c.37.1.8 PDB: 2ery_A*
Probab=92.90 E-value=0.053 Score=47.69 Aligned_cols=23 Identities=17% Similarity=0.394 Sum_probs=20.8
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+.++...
T Consensus 10 ~~i~v~G~~~~GKssli~~l~~~ 32 (181)
T 2fn4_A 10 HKLVVVGGGGVGKSALTIQFIQS 32 (181)
T ss_dssp EEEEEEECTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999765
No 455
>2bbs_A Cystic fibrosis transmembrane conductance regulator; ATP binding cassette, transport protein; HET: ATP; 2.05A {Homo sapiens} PDB: 2bbt_A* 1xmi_A* 1xmj_A* 2bbo_A* 3si7_A* 1r0w_A 1q3h_A 1r0x_A* 1r0y_A* 1r0z_A* 1r10_A* 1xf9_A* 1xfa_A*
Probab=92.89 E-value=0.046 Score=53.43 Aligned_cols=24 Identities=21% Similarity=0.242 Sum_probs=21.4
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||.+.|+..+
T Consensus 65 e~~~i~G~NGsGKSTLlk~l~Gl~ 88 (290)
T 2bbs_A 65 QLLAVAGSTGAGKTSLLMMIMGEL 88 (290)
T ss_dssp CEEEEEESTTSSHHHHHHHHTTSS
T ss_pred CEEEEECCCCCcHHHHHHHHhcCC
Confidence 358899999999999999998765
No 456
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=92.88 E-value=0.078 Score=58.32 Aligned_cols=18 Identities=39% Similarity=0.650 Sum_probs=16.0
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
.+++++||+|+|||+.+-
T Consensus 41 ~~~lv~apTGsGKT~~~~ 58 (702)
T 2p6r_A 41 KNLLLAMPTAAGKTLLAE 58 (702)
T ss_dssp SCEEEECSSHHHHHHHHH
T ss_pred CcEEEEcCCccHHHHHHH
Confidence 479999999999999874
No 457
>1oxx_K GLCV, glucose, ABC transporter, ATP binding protein; ABC-ATPase, ATP-binding cassette, ATPase, transport protein; 1.45A {Sulfolobus solfataricus} SCOP: b.40.6.3 c.37.1.12 PDB: 1oxs_C 1oxt_A 1oxu_A* 1oxv_A*
Probab=92.87 E-value=0.033 Score=56.03 Aligned_cols=23 Identities=35% Similarity=0.488 Sum_probs=20.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-+.|.||+|||||||.+.||...
T Consensus 33 ~~~llGpnGsGKSTLLr~iaGl~ 55 (353)
T 1oxx_K 33 RFGILGPSGAGKTTFMRIIAGLD 55 (353)
T ss_dssp EEEEECSCHHHHHHHHHHHHTSS
T ss_pred EEEEECCCCCcHHHHHHHHhCCC
Confidence 58899999999999999999764
No 458
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=92.87 E-value=0.093 Score=53.35 Aligned_cols=32 Identities=25% Similarity=0.467 Sum_probs=25.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHh---CCCeEEEe
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS---GLDYALMT 300 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l---~~~~~~v~ 300 (512)
.++++.||+|+|||++++.++..+ +..++.++
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D 70 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIID 70 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEe
Confidence 489999999999999999997653 44444444
No 459
>1svi_A GTP-binding protein YSXC; ENGB, GTPase, GDP, hydrolase; HET: GDP; 1.95A {Bacillus subtilis} SCOP: c.37.1.8 PDB: 1sul_A* 1svw_A*
Probab=92.87 E-value=0.06 Score=48.26 Aligned_cols=23 Identities=17% Similarity=0.307 Sum_probs=20.4
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|+..+...
T Consensus 24 ~~i~v~G~~~~GKSsli~~l~~~ 46 (195)
T 1svi_A 24 PEIALAGRSNVGKSSFINSLINR 46 (195)
T ss_dssp CEEEEEEBTTSSHHHHHHHHHTC
T ss_pred CEEEEECCCCCCHHHHHHHHhCC
Confidence 47999999999999999999643
No 460
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=92.86 E-value=0.13 Score=56.72 Aligned_cols=19 Identities=37% Similarity=0.681 Sum_probs=16.5
Q ss_pred cceEEecCCCCchHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARE 287 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~a 287 (512)
.+++++||+|+|||+.+-.
T Consensus 47 ~~~lv~apTGsGKT~~~~l 65 (715)
T 2va8_A 47 NRLLLTSPTGSGKTLIAEM 65 (715)
T ss_dssp CCEEEECCTTSCHHHHHHH
T ss_pred CcEEEEcCCCCcHHHHHHH
Confidence 4799999999999998743
No 461
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=92.86 E-value=0.06 Score=49.77 Aligned_cols=25 Identities=28% Similarity=0.397 Sum_probs=22.0
Q ss_pred cceEEecCCCCchHHHHHHHHHHhC
Q 010366 269 RNMLFYGPPGTGKTMAARELARKSG 293 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l~ 293 (512)
..++|.|++|+|||+++..++....
T Consensus 39 ~~i~ivG~~gvGKTtl~~~l~~~~~ 63 (226)
T 2hf9_A 39 VAFDFMGAIGSGKTLLIEKLIDNLK 63 (226)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 4689999999999999999988753
No 462
>2hxs_A RAB-26, RAS-related protein RAB-28; GTPase, signaling protein; HET: G3D; 1.10A {Homo sapiens} PDB: 2hy4_A* 3e5h_A*
Probab=92.86 E-value=0.054 Score=47.63 Aligned_cols=22 Identities=23% Similarity=0.339 Sum_probs=19.8
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
-.++|.|++|+|||+|+..+..
T Consensus 7 ~ki~v~G~~~~GKssl~~~l~~ 28 (178)
T 2hxs_A 7 LKIVVLGDGASGKTSLTTCFAQ 28 (178)
T ss_dssp EEEEEECCTTSSHHHHHHHHHG
T ss_pred EEEEEECcCCCCHHHHHHHHHh
Confidence 3699999999999999999964
No 463
>2oil_A CATX-8, RAS-related protein RAB-25; G-protein, GDP, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 2.30A {Homo sapiens}
Probab=92.85 E-value=0.058 Score=48.43 Aligned_cols=22 Identities=27% Similarity=0.525 Sum_probs=20.3
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 27 ki~v~G~~~~GKSsLi~~l~~~ 48 (193)
T 2oil_A 27 KVVLIGESGVGKTNLLSRFTRN 48 (193)
T ss_dssp EEEEESSTTSSHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999764
No 464
>3tw8_B RAS-related protein RAB-35; longin domain, RAB GTPase, guanine exchange factor; 2.10A {Homo sapiens}
Probab=92.84 E-value=0.051 Score=47.80 Aligned_cols=22 Identities=27% Similarity=0.416 Sum_probs=19.7
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
..++|.|++|+|||+|+.++..
T Consensus 10 ~~i~v~G~~~~GKssl~~~l~~ 31 (181)
T 3tw8_B 10 FKLLIIGDSGVGKSSLLLRFAD 31 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHCS
T ss_pred eEEEEECCCCCCHHHHHHHHhc
Confidence 3699999999999999999854
No 465
>2qtf_A Protein HFLX, GTP-binding protein; beta-alpha-barrels, nucleotide-binding, nucleotide binding protein; 2.00A {Sulfolobus solfataricus P2} PDB: 2qth_A* 3kxi_A* 3kxl_A 3kxk_A
Probab=92.83 E-value=0.48 Score=47.66 Aligned_cols=22 Identities=23% Similarity=0.211 Sum_probs=19.7
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+.|.|+||+|||+|.++++..
T Consensus 181 ~V~lvG~~naGKSTLln~L~~~ 202 (364)
T 2qtf_A 181 SIGIVGYTNSGKTSLFNSLTGL 202 (364)
T ss_dssp EEEEECBTTSSHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHCC
Confidence 5889999999999999999753
No 466
>1m7b_A RND3/RHOE small GTP-binding protein; small GTPase, signaling protein; HET: GTP; 2.00A {Homo sapiens} SCOP: c.37.1.8 PDB: 2v55_B*
Probab=92.81 E-value=0.054 Score=48.31 Aligned_cols=23 Identities=22% Similarity=0.323 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|++.+...
T Consensus 8 ~ki~v~G~~~vGKSsli~~l~~~ 30 (184)
T 1m7b_A 8 CKIVVVGDSQCGKTALLHVFAKD 30 (184)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999865
No 467
>4hlc_A DTMP kinase, thymidylate kinase; TMK, MRSA, pipiridine, transfera transferase inhibitor complex; HET: T05; 1.55A {Staphylococcus aureus subsp} PDB: 2cck_A 4gfd_A* 4gsy_A* 4hdc_A* 4hej_A* 2ccj_A* 4hld_A* 2ccg_A*
Probab=92.80 E-value=0.19 Score=46.25 Aligned_cols=30 Identities=30% Similarity=0.495 Sum_probs=24.1
Q ss_pred eEEecCCCCchHHHHHHHHHHhC--CCeEEEe
Q 010366 271 MLFYGPPGTGKTMAARELARKSG--LDYALMT 300 (512)
Q Consensus 271 vLL~GppGtGKT~lA~alA~~l~--~~~~~v~ 300 (512)
|.|-|+.|+||||.++.|+..+. .+++...
T Consensus 5 I~~EG~dGsGKsTq~~~L~~~L~~~~~v~~~~ 36 (205)
T 4hlc_A 5 ITFEGPEGSGKTTVINEVYHRLVKDYDVIMTR 36 (205)
T ss_dssp EEEECCTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEECCCCCcHHHHHHHHHHHHHCCCCEEEee
Confidence 67789999999999999999884 4555443
No 468
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=92.79 E-value=0.11 Score=51.42 Aligned_cols=23 Identities=30% Similarity=0.388 Sum_probs=20.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHh
Q 010366 270 NMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l 292 (512)
-++|+||.|+||||+.+.++...
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~ 28 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQ 28 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhc
Confidence 58999999999999999998764
No 469
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=92.77 E-value=0.11 Score=49.19 Aligned_cols=27 Identities=15% Similarity=0.117 Sum_probs=23.8
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCCe
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLDY 296 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~~ 296 (512)
-+.|+|++|||||++++.++..+|.++
T Consensus 3 ~i~ltG~~~sGK~tv~~~l~~~~g~~~ 29 (241)
T 1dek_A 3 LIFLSGVKRSGKDTTADFIMSNYSAVK 29 (241)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSCEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCeE
Confidence 378999999999999999999888654
No 470
>2bov_A RAla, RAS-related protein RAL-A; C3BOT, exoenzyme, RAla, GTPase, ribosylating toxin, GTP-binding, lipoprotein, prenylation; HET: GDP; 2.66A {Homo sapiens}
Probab=92.75 E-value=0.062 Score=48.58 Aligned_cols=23 Identities=17% Similarity=0.404 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..|+|.|++|+|||+|+..+...
T Consensus 15 ~ki~v~G~~~~GKSsli~~l~~~ 37 (206)
T 2bov_A 15 HKVIMVGSGGVGKSALTLQFMYD 37 (206)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999754
No 471
>2efe_B Small GTP-binding protein-like; GEF, GTPase, VPS9, nucleotide, transport protein; HET: GNH; 2.08A {Arabidopsis thaliana} PDB: 2efd_B 2efc_B* 2efh_B*
Probab=92.70 E-value=0.062 Score=47.39 Aligned_cols=23 Identities=17% Similarity=0.442 Sum_probs=20.5
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|++|+|||+|+..+...
T Consensus 13 ~ki~v~G~~~~GKSsli~~l~~~ 35 (181)
T 2efe_B 13 AKLVLLGDVGAGKSSLVLRFVKD 35 (181)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHC
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999764
No 472
>2bme_A RAB4A, RAS-related protein RAB4A; GTP-binding protein, vesicular transport, endocytosis, prenylation, protein transport, transport; HET: GNP; 1.57A {Homo sapiens} SCOP: c.37.1.8 PDB: 2bmd_A* 1yu9_A* 1z0k_A*
Probab=92.68 E-value=0.058 Score=47.88 Aligned_cols=22 Identities=32% Similarity=0.546 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 12 ki~v~G~~~~GKSsli~~l~~~ 33 (186)
T 2bme_A 12 KFLVIGNAGTGKSCLLHQFIEK 33 (186)
T ss_dssp EEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 473
>2npi_A Protein CLP1; CLP1-PCF11 complex, ATP binding, ternary complex, transcript; HET: ATP; 2.95A {Saccharomyces cerevisiae}
Probab=92.68 E-value=0.097 Score=54.57 Aligned_cols=24 Identities=29% Similarity=0.394 Sum_probs=21.3
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
..+.|.||+|+|||||++.|+...
T Consensus 139 e~v~IvGpnGsGKSTLlr~L~Gl~ 162 (460)
T 2npi_A 139 PRVVIVGGSQTGKTSLSRTLCSYA 162 (460)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHTT
T ss_pred CEEEEECCCCCCHHHHHHHHhCcc
Confidence 469999999999999999998754
No 474
>1m2o_B GTP-binding protein SAR1, GTP binding protein; zinc-finger, beta barrel, VWA domain, gelsolin domain,; HET: GNP; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.8 PDB: 2qtv_B*
Probab=92.67 E-value=0.06 Score=48.51 Aligned_cols=23 Identities=30% Similarity=0.443 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..+++.|+||+|||++++.+...
T Consensus 24 ~ki~~vG~~~vGKSsli~~l~~~ 46 (190)
T 1m2o_B 24 GKLLFLGLDNAGKTTLLHMLKND 46 (190)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999863
No 475
>3ch4_B Pmkase, phosphomevalonate kinase; parallel beta-sheet with the strand order 23145, walker A motif, cholesterol biosynthesis, lipid synthesis; 1.76A {Homo sapiens}
Probab=92.67 E-value=0.076 Score=48.86 Aligned_cols=29 Identities=31% Similarity=0.482 Sum_probs=25.2
Q ss_pred CCCcceEEecCCCCchHHHHHHHHHHhCC
Q 010366 266 APFRNMLFYGPPGTGKTMAARELARKSGL 294 (512)
Q Consensus 266 ~p~~~vLL~GppGtGKT~lA~alA~~l~~ 294 (512)
.|..-++|+|.||+||+++|..+.+.++.
T Consensus 9 ~~~~II~itGk~~SGKd~va~~l~~~~g~ 37 (202)
T 3ch4_B 9 APRLVLLFSGKRKSGKDFVTEALQSRLGA 37 (202)
T ss_dssp CCSEEEEEEECTTSSHHHHHHHHHHHHCT
T ss_pred CCCEEEEEECCCCCChHHHHHHHHHHcCC
Confidence 46678999999999999999999887753
No 476
>1tq4_A IIGP1, interferon-inducible GTPase; interferon gamma, dimer, immunology, signaling protein; HET: GDP; 1.95A {Mus musculus} SCOP: c.37.1.8 PDB: 1tqd_A* 1tq6_A* 1tpz_A* 1tq2_A*
Probab=92.65 E-value=0.092 Score=53.90 Aligned_cols=22 Identities=27% Similarity=0.365 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+.|.||+|+|||||.++|+..
T Consensus 71 ~valvG~nGaGKSTLln~L~Gl 92 (413)
T 1tq4_A 71 NVAVTGETGSGKSSFINTLRGI 92 (413)
T ss_dssp EEEEEECTTSSHHHHHHHHHTC
T ss_pred EEEEECCCCCcHHHHHHHHhCC
Confidence 5889999999999999999873
No 477
>3clv_A RAB5 protein, putative; malaria, GTPase, structural genomics, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.89A {Plasmodium falciparum}
Probab=92.64 E-value=0.063 Score=48.13 Aligned_cols=23 Identities=17% Similarity=0.354 Sum_probs=20.9
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
-.++|.|++|+|||+|+.++...
T Consensus 8 ~ki~v~G~~~~GKSsli~~l~~~ 30 (208)
T 3clv_A 8 YKTVLLGESSVGKSSIVLRLTKD 30 (208)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 36999999999999999999875
No 478
>2g6b_A RAS-related protein RAB-26; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, unknown function; HET: GNP; 2.00A {Homo sapiens} SCOP: c.37.1.8
Probab=92.61 E-value=0.066 Score=47.18 Aligned_cols=23 Identities=22% Similarity=0.340 Sum_probs=20.6
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+..+...
T Consensus 11 ~~i~v~G~~~~GKssli~~l~~~ 33 (180)
T 2g6b_A 11 FKVMLVGDSGVGKTCLLVRFKDG 33 (180)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHhC
Confidence 36999999999999999999764
No 479
>3nh6_A ATP-binding cassette SUB-family B member 6, mitoc; ABC-transporter, ABCB6, nucleotide binding domain, heme BIOS transport protein; 2.00A {Homo sapiens} PDB: 3nh9_A* 3nha_A* 3nhb_A*
Probab=92.60 E-value=0.041 Score=54.24 Aligned_cols=26 Identities=35% Similarity=0.520 Sum_probs=22.4
Q ss_pred CCcceEEecCCCCchHHHHHHHHHHh
Q 010366 267 PFRNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 267 p~~~vLL~GppGtGKT~lA~alA~~l 292 (512)
+...+.|+||+|+|||||++.|+..+
T Consensus 79 ~Ge~vaivG~sGsGKSTLl~ll~gl~ 104 (306)
T 3nh6_A 79 PGQTLALVGPSGAGKSTILRLLFRFY 104 (306)
T ss_dssp TTCEEEEESSSCHHHHHHHHHHTTSS
T ss_pred CCCEEEEECCCCchHHHHHHHHHcCC
Confidence 33469999999999999999998765
No 480
>1mh1_A RAC1; GTP-binding, GTPase, small G-protein, RHO family, RAS super family; HET: GNP; 1.38A {Homo sapiens} SCOP: c.37.1.8 PDB: 1hh4_A* 2p2l_A* 2h7v_A* 1g4u_R* 1i4d_D* 1i4l_D* 2vrw_A 1e96_A* 1i4t_D* 2rmk_A* 2yin_C 1ryf_A* 1ryh_A* 3su8_A* 3sua_A* 2fju_A* 1he1_C* 2nz8_A 1foe_B 3bji_C ...
Probab=92.55 E-value=0.067 Score=47.32 Aligned_cols=22 Identities=18% Similarity=0.206 Sum_probs=20.0
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+..+...
T Consensus 7 ~i~~~G~~~~GKssl~~~l~~~ 28 (186)
T 1mh1_A 7 KCVVVGDGAVGKTCLLISYTTN 28 (186)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999754
No 481
>2cxx_A Probable GTP-binding protein ENGB; structural genomics, NPPSFA, national P protein structural and functional analyses; HET: GDP; 1.70A {Pyrococcus horikoshii} SCOP: c.37.1.8
Probab=92.53 E-value=0.057 Score=48.06 Aligned_cols=22 Identities=27% Similarity=0.474 Sum_probs=19.8
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++.|++|+|||+|+..+...
T Consensus 3 ki~v~G~~~~GKSsli~~l~~~ 24 (190)
T 2cxx_A 3 TIIFAGRSNVGKSTLIYRLTGK 24 (190)
T ss_dssp EEEEEEBTTSSHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHhCc
Confidence 5899999999999999999754
No 482
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=92.43 E-value=0.094 Score=52.58 Aligned_cols=26 Identities=15% Similarity=0.299 Sum_probs=23.4
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
.+.|.||+|+|||||.+.|+......
T Consensus 73 ~~gIiG~nGaGKTTLl~~I~g~~~~~ 98 (347)
T 2obl_A 73 RIGIFAGSGVGKSTLLGMICNGASAD 98 (347)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcCCCCC
Confidence 59999999999999999999987644
No 483
>2gf9_A RAS-related protein RAB-3D; G-protein, structural genomics, structural genomics consortium, SGC, protein transport; HET: GDP; 1.53A {Homo sapiens} PDB: 3rab_A*
Probab=92.41 E-value=0.071 Score=47.68 Aligned_cols=22 Identities=27% Similarity=0.344 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 24 ki~vvG~~~~GKSsli~~l~~~ 45 (189)
T 2gf9_A 24 KLLLIGNSSVGKTSFLFRYADD 45 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHcC
Confidence 6999999999999999999764
No 484
>3tui_C Methionine import ATP-binding protein METN; ABC-transporter, type I ABC type importer, methionine uptake transporter, membrane protein; HET: ADP; 2.90A {Escherichia coli} PDB: 3tuj_C 3tuz_C* 3dhw_C
Probab=92.39 E-value=0.072 Score=53.71 Aligned_cols=24 Identities=21% Similarity=0.221 Sum_probs=21.2
Q ss_pred cceEEecCCCCchHHHHHHHHHHh
Q 010366 269 RNMLFYGPPGTGKTMAARELARKS 292 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~l 292 (512)
.-+.|.||+|+|||||.+.|+...
T Consensus 55 ei~~IiGpnGaGKSTLlr~i~GL~ 78 (366)
T 3tui_C 55 QIYGVIGASGAGKSTLIRCVNLLE 78 (366)
T ss_dssp CEEEEECCTTSSHHHHHHHHHTSS
T ss_pred CEEEEEcCCCchHHHHHHHHhcCC
Confidence 358899999999999999998764
No 485
>3bwd_D RAC-like GTP-binding protein ARAC6; G domain, cytoplasm, lipoprotein, membrane, methylation, nucleotide-binding, prenylation, ----; HET: GDP; 1.53A {Arabidopsis thaliana} PDB: 2nty_C* 2wbl_C
Probab=92.38 E-value=0.073 Score=46.96 Aligned_cols=23 Identities=17% Similarity=0.130 Sum_probs=20.5
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
-.+++.|++|+|||+++..+...
T Consensus 9 ~ki~v~G~~~~GKssl~~~~~~~ 31 (182)
T 3bwd_D 9 IKCVTVGDGAVGKTCLLISYTSN 31 (182)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHS
T ss_pred EEEEEECCCCCCHHHHHHHHhcC
Confidence 36999999999999999999754
No 486
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=92.37 E-value=0.12 Score=54.90 Aligned_cols=34 Identities=26% Similarity=0.258 Sum_probs=24.2
Q ss_pred cceEEecCCCCchHHHHHHH--HHHh--CCCeEEEeCC
Q 010366 269 RNMLFYGPPGTGKTMAAREL--ARKS--GLDYALMTGG 302 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~al--A~~l--~~~~~~v~~~ 302 (512)
..++|.||+|||||||++.+ +... +...+++++.
T Consensus 40 e~~~l~G~nGsGKSTL~~~~ll~Gl~~~~~g~i~v~g~ 77 (525)
T 1tf7_A 40 RSTLVSGTSGTGKTLFSIQFLYNGIIEFDEPGVFVTFE 77 (525)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHHHCCCEEEEESS
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe
Confidence 46899999999999999994 3332 3445555543
No 487
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=92.36 E-value=0.064 Score=59.94 Aligned_cols=21 Identities=43% Similarity=0.727 Sum_probs=17.2
Q ss_pred ceEEecCCCCchHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~ 290 (512)
.+++.||||||||+++..+..
T Consensus 377 ~~lI~GppGTGKT~~i~~~i~ 397 (802)
T 2xzl_A 377 LSLIQGPPGTGKTVTSATIVY 397 (802)
T ss_dssp EEEEECSTTSSHHHHHHHHHH
T ss_pred CEEEECCCCCCHHHHHHHHHH
Confidence 489999999999988666543
No 488
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=92.33 E-value=0.33 Score=51.10 Aligned_cols=18 Identities=50% Similarity=0.547 Sum_probs=15.7
Q ss_pred cceEEecCCCCchHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAAR 286 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~ 286 (512)
+++++.+|+|+|||..+-
T Consensus 159 ~~~ll~apTGsGKT~~~~ 176 (508)
T 3fho_A 159 RNMIGQSQSGTGKTAAFA 176 (508)
T ss_dssp CCEEEECCSSTTSHHHHH
T ss_pred CCEEEECCCCccHHHHHH
Confidence 579999999999998743
No 489
>3ihw_A Centg3; RAS, centaurin, GTPase, structural genomics, structural genomics consortium, SGC, alternative splicing, ANK repeat, cytoplasm, GTP-binding; 1.92A {Homo sapiens} SCOP: c.37.1.0
Probab=92.33 E-value=0.073 Score=47.70 Aligned_cols=22 Identities=14% Similarity=0.172 Sum_probs=19.9
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 22 ki~ivG~~~vGKSsL~~~~~~~ 43 (184)
T 3ihw_A 22 KVGIVGNLSSGKSALVHRYLTG 43 (184)
T ss_dssp EEEEECCTTSCHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHhcC
Confidence 6999999999999999888764
No 490
>2iwr_A Centaurin gamma 1; ANK repeat, zinc-finger, GTP-binding, polymorphism, nucleotide-binding, alternative splicing, protein transport; HET: CAF; 1.5A {Homo sapiens} PDB: 2bmj_A
Probab=92.32 E-value=0.058 Score=47.59 Aligned_cols=23 Identities=13% Similarity=0.172 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
-.++|.|++|+|||+|+..+...
T Consensus 8 ~ki~~vG~~~vGKTsli~~l~~~ 30 (178)
T 2iwr_A 8 LRLGVLGDARSGKSSLIHRFLTG 30 (178)
T ss_dssp EEEEEECCGGGCHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 46999999999999999999864
No 491
>3tkl_A RAS-related protein RAB-1A; vesicle trafficking, protein transport-protein binding compl; HET: GTP; 2.18A {Homo sapiens}
Probab=92.28 E-value=0.076 Score=47.57 Aligned_cols=23 Identities=26% Similarity=0.427 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+.++...
T Consensus 17 ~ki~v~G~~~~GKSsli~~l~~~ 39 (196)
T 3tkl_A 17 FKLLLIGDSGVGKSCLLLRFADD 39 (196)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999864
No 492
>3c5c_A RAS-like protein 12; GDP, GTPase, structural genomics consortium, SGC, limited proteolysis, GTP-binding, nucleotide-binding, signaling protein; HET: GDP; 1.85A {Homo sapiens}
Probab=92.23 E-value=0.076 Score=47.60 Aligned_cols=22 Identities=27% Similarity=0.477 Sum_probs=20.1
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 23 ki~vvG~~~vGKTsLi~~l~~~ 44 (187)
T 3c5c_A 23 NLAILGRRGAGKSALTVKFLTK 44 (187)
T ss_dssp EEEEECCTTSSHHHHHHHHHHS
T ss_pred EEEEECCCCCcHHHHHHHHHhC
Confidence 6999999999999999998764
No 493
>2atv_A RERG, RAS-like estrogen-regulated growth inhibitor; GDP/GTP binding, GTP hydrolysis, structural genomics, structural genomics consortium, SGC; HET: GDP; 1.90A {Homo sapiens} SCOP: c.37.1.8
Probab=92.18 E-value=0.083 Score=47.61 Aligned_cols=23 Identities=22% Similarity=0.447 Sum_probs=20.8
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+..+...
T Consensus 29 ~ki~v~G~~~vGKSsli~~l~~~ 51 (196)
T 2atv_A 29 VKLAIFGRAGVGKSALVVRFLTK 51 (196)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHhC
Confidence 47999999999999999999765
No 494
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=92.17 E-value=0.1 Score=54.07 Aligned_cols=26 Identities=27% Similarity=0.418 Sum_probs=23.1
Q ss_pred ceEEecCCCCchHHHHHHHHHHhCCC
Q 010366 270 NMLFYGPPGTGKTMAARELARKSGLD 295 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~l~~~ 295 (512)
.+.|.||+|||||||++.|+......
T Consensus 159 ~~~IvG~sGsGKSTLl~~Iag~~~~~ 184 (438)
T 2dpy_A 159 RMGLFAGSGVGKSVLLGMMARYTRAD 184 (438)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHSCCS
T ss_pred EEEEECCCCCCHHHHHHHHhcccCCC
Confidence 58899999999999999999987543
No 495
>1ko7_A HPR kinase/phosphatase; protein kinase, phosphotransfer, protein phosphatase, dual activity, product, substrate, transferase, hydrolase; 1.95A {Staphylococcus xylosus} SCOP: c.98.2.1 c.91.1.2
Probab=92.16 E-value=0.08 Score=52.19 Aligned_cols=23 Identities=35% Similarity=0.547 Sum_probs=21.1
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
.+++|.|++|+|||++|.++...
T Consensus 145 ~~vl~~G~sG~GKSt~a~~l~~~ 167 (314)
T 1ko7_A 145 VGVLITGDSGIGKSETALELIKR 167 (314)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHT
T ss_pred EEEEEEeCCCCCHHHHHHHHHhc
Confidence 57999999999999999999875
No 496
>1x3s_A RAS-related protein RAB-18; GTPase, GNP, structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: GNP; 1.32A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.08 Score=47.29 Aligned_cols=23 Identities=22% Similarity=0.393 Sum_probs=20.7
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+..+...
T Consensus 16 ~~i~v~G~~~~GKssli~~l~~~ 38 (195)
T 1x3s_A 16 LKILIIGESGVGKSSLLLRFTDD 38 (195)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHS
T ss_pred eEEEEECCCCCCHHHHHHHHHcC
Confidence 36999999999999999999765
No 497
>1vg8_A RAS-related protein RAB-7; GTP-binding protein, protein transport; HET: GNP; 1.70A {Rattus norvegicus} SCOP: c.37.1.8 PDB: 1vg0_B* 3law_A* 1t91_A* 1yhn_A* 1vg1_A* 1vg9_B*
Probab=92.15 E-value=0.079 Score=47.99 Aligned_cols=23 Identities=26% Similarity=0.458 Sum_probs=20.8
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+..+...
T Consensus 9 ~ki~v~G~~~~GKSsli~~l~~~ 31 (207)
T 1vg8_A 9 LKVIILGDSGVGKTSLMNQYVNK 31 (207)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHS
T ss_pred eEEEEECcCCCCHHHHHHHHHcC
Confidence 47999999999999999999765
No 498
>2fg5_A RAB-22B, RAS-related protein RAB-31; G-protein, GTP analogue, structural genomics, structural genomics consortium, SGC, signaling protein; HET: GNP; 2.80A {Homo sapiens} SCOP: c.37.1.8
Probab=92.15 E-value=0.073 Score=47.84 Aligned_cols=22 Identities=18% Similarity=0.410 Sum_probs=20.2
Q ss_pred ceEEecCCCCchHHHHHHHHHH
Q 010366 270 NMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 270 ~vLL~GppGtGKT~lA~alA~~ 291 (512)
.++|.|++|+|||+|+..+...
T Consensus 25 ki~vvG~~~~GKSsli~~l~~~ 46 (192)
T 2fg5_A 25 KVCLLGDTGVGKSSIVCRFVQD 46 (192)
T ss_dssp EEEEEECTTSSHHHHHHHHHHC
T ss_pred EEEEECcCCCCHHHHHHHHhcC
Confidence 6999999999999999999764
No 499
>1pui_A ENGB, probable GTP-binding protein ENGB; structural genomics, nysgxrc T16, GTPase, PSI, protein structure initiative; 2.00A {Escherichia coli} SCOP: c.37.1.8
Probab=92.13 E-value=0.043 Score=50.05 Aligned_cols=22 Identities=27% Similarity=0.410 Sum_probs=19.5
Q ss_pred cceEEecCCCCchHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELAR 290 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~ 290 (512)
..+.|.|++|+|||+|.+.++.
T Consensus 27 ~~v~lvG~~g~GKSTLl~~l~g 48 (210)
T 1pui_A 27 IEVAFAGRSNAGKSSALNTLTN 48 (210)
T ss_dssp EEEEEEECTTSSHHHHHTTTCC
T ss_pred cEEEEECCCCCCHHHHHHHHhC
Confidence 3599999999999999998864
No 500
>3t5g_A GTP-binding protein RHEB; immunoglobulin-like beta sandwitch, PDE delta, RHEB; HET: GDP FAR; 1.70A {Homo sapiens} SCOP: c.37.1.8 PDB: 1xtq_A* 1xtr_A* 1xts_A* 2l0x_A* 3sea_A*
Probab=92.11 E-value=0.076 Score=46.93 Aligned_cols=23 Identities=17% Similarity=0.303 Sum_probs=20.4
Q ss_pred cceEEecCCCCchHHHHHHHHHH
Q 010366 269 RNMLFYGPPGTGKTMAARELARK 291 (512)
Q Consensus 269 ~~vLL~GppGtGKT~lA~alA~~ 291 (512)
..++|.|++|+|||+|+..+...
T Consensus 7 ~ki~~~G~~~~GKSsli~~l~~~ 29 (181)
T 3t5g_A 7 RKIAILGYRSVGKSSLTIQFVEG 29 (181)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHS
T ss_pred EEEEEECcCCCCHHHHHHHHHcC
Confidence 36999999999999999999743
Done!