Query 010367
Match_columns 512
No_of_seqs 386 out of 2647
Neff 8.9
Searched_HMMs 46136
Date Thu Mar 28 23:42:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010367.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010367hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1123 RNA polymerase II tran 100.0 1E-123 2E-128 907.4 34.0 477 1-488 278-754 (776)
2 TIGR00603 rad25 DNA repair hel 100.0 1.5E-96 3E-101 780.7 50.5 491 1-509 231-732 (732)
3 COG1061 SSL2 DNA or RNA helica 100.0 3.1E-53 6.8E-58 439.1 36.4 382 5-411 17-420 (442)
4 KOG0385 Chromatin remodeling c 100.0 7.6E-47 1.6E-51 385.9 29.7 347 23-400 165-614 (971)
5 KOG0384 Chromodomain-helicase 100.0 7.1E-47 1.5E-51 402.8 25.2 416 22-473 367-895 (1373)
6 PHA02558 uvsW UvsW helicase; P 100.0 4.6E-45 9.9E-50 385.4 38.7 357 23-409 112-495 (501)
7 PLN03142 Probable chromatin-re 100.0 4.2E-45 9.1E-50 402.0 34.6 347 24-400 168-614 (1033)
8 KOG0389 SNF2 family DNA-depend 100.0 3.8E-43 8.3E-48 360.1 28.5 363 12-400 386-903 (941)
9 KOG0392 SNF2 family DNA-depend 100.0 1.3E-41 2.8E-46 361.2 27.2 352 16-393 966-1462(1549)
10 KOG0387 Transcription-coupled 100.0 2.3E-41 5E-46 347.5 27.8 350 24-400 204-675 (923)
11 COG1111 MPH1 ERCC4-like helica 100.0 2.1E-39 4.6E-44 320.6 31.4 344 21-392 11-488 (542)
12 KOG0386 Chromatin remodeling c 100.0 1.4E-39 3.1E-44 341.1 22.8 385 23-445 392-889 (1157)
13 PRK04914 ATP-dependent helicas 100.0 2.7E-37 5.8E-42 339.5 36.7 348 22-397 149-617 (956)
14 KOG0390 DNA repair protein, SN 100.0 8E-37 1.7E-41 322.3 32.2 367 19-411 232-730 (776)
15 PTZ00110 helicase; Provisional 100.0 5E-37 1.1E-41 326.6 25.2 320 24-401 151-498 (545)
16 KOG0330 ATP-dependent RNA heli 100.0 2.2E-36 4.7E-41 288.8 21.9 318 24-400 82-420 (476)
17 PRK04837 ATP-dependent RNA hel 100.0 8.7E-37 1.9E-41 317.5 20.2 293 24-361 29-351 (423)
18 PRK10590 ATP-dependent RNA hel 100.0 3.7E-36 8.1E-41 315.0 24.6 292 24-361 22-341 (456)
19 TIGR00614 recQ_fam ATP-depende 100.0 4.8E-35 1E-39 307.5 32.5 286 24-361 10-322 (470)
20 PRK13766 Hef nuclease; Provisi 100.0 8.2E-35 1.8E-39 324.6 35.7 343 22-392 12-486 (773)
21 PRK11776 ATP-dependent RNA hel 100.0 6.6E-36 1.4E-40 314.2 25.1 302 24-385 25-349 (460)
22 PLN00206 DEAD-box ATP-dependen 100.0 1.2E-35 2.6E-40 315.1 27.1 294 24-361 142-464 (518)
23 PRK11192 ATP-dependent RNA hel 100.0 6.7E-36 1.4E-40 312.2 24.4 293 24-361 22-341 (434)
24 PRK01297 ATP-dependent RNA hel 100.0 1.3E-35 2.8E-40 312.9 26.7 293 24-361 108-431 (475)
25 PRK04537 ATP-dependent RNA hel 100.0 1.8E-35 4E-40 315.7 22.6 293 24-361 30-353 (572)
26 KOG0388 SNF2 family DNA-depend 100.0 3.5E-35 7.6E-40 297.2 23.2 346 23-395 565-1164(1185)
27 KOG1000 Chromatin remodeling p 100.0 1.1E-34 2.3E-39 284.3 25.6 354 24-403 197-621 (689)
28 KOG0331 ATP-dependent RNA heli 100.0 4.8E-35 1E-39 297.1 22.8 297 24-361 112-437 (519)
29 PRK11448 hsdR type I restricti 100.0 1.6E-34 3.6E-39 324.2 27.3 325 23-361 411-802 (1123)
30 PRK11057 ATP-dependent DNA hel 100.0 1.2E-33 2.5E-38 304.8 31.5 283 24-361 24-332 (607)
31 PTZ00424 helicase 45; Provisio 100.0 1.1E-34 2.4E-39 300.5 21.6 306 24-386 49-375 (401)
32 PRK11634 ATP-dependent RNA hel 100.0 2.1E-34 4.7E-39 309.2 24.0 292 24-361 27-341 (629)
33 KOG0391 SNF2 family DNA-depend 100.0 2.2E-34 4.8E-39 303.3 22.9 134 249-395 1258-1397(1958)
34 TIGR03817 DECH_helic helicase/ 100.0 6.4E-33 1.4E-37 303.4 32.6 333 24-399 35-400 (742)
35 TIGR00580 mfd transcription-re 100.0 4.4E-33 9.4E-38 307.6 30.9 315 22-400 448-785 (926)
36 TIGR01389 recQ ATP-dependent D 100.0 1.4E-32 3E-37 297.1 31.6 282 25-361 13-320 (591)
37 PLN03137 ATP-dependent DNA hel 100.0 1.1E-32 2.3E-37 300.5 29.4 289 24-361 459-776 (1195)
38 KOG4439 RNA polymerase II tran 100.0 8.3E-33 1.8E-37 280.8 25.0 367 21-400 321-873 (901)
39 COG0513 SrmB Superfamily II DN 100.0 1.4E-32 3E-37 289.9 27.8 303 24-384 50-379 (513)
40 PRK02362 ski2-like helicase; P 100.0 3.1E-32 6.7E-37 300.8 30.4 299 24-361 22-384 (737)
41 PRK10917 ATP-dependent DNA hel 100.0 2.9E-32 6.3E-37 297.0 29.5 291 22-361 258-578 (681)
42 TIGR00643 recG ATP-dependent D 100.0 3.9E-32 8.4E-37 294.2 29.3 291 22-361 232-555 (630)
43 KOG0354 DEAD-box like helicase 100.0 6.8E-32 1.5E-36 282.1 28.9 322 20-360 57-518 (746)
44 PRK10689 transcription-repair 100.0 6.2E-32 1.3E-36 304.5 30.1 316 21-400 596-934 (1147)
45 KOG1015 Transcription regulato 100.0 1.3E-32 2.8E-37 285.5 21.5 381 12-409 655-1298(1567)
46 PRK13767 ATP-dependent helicas 100.0 1.3E-31 2.8E-36 298.7 30.6 305 24-360 31-385 (876)
47 KOG1002 Nucleotide excision re 100.0 8.5E-32 1.8E-36 263.7 22.0 360 23-396 182-760 (791)
48 PRK00254 ski2-like helicase; P 100.0 1.3E-30 2.8E-35 287.3 28.2 297 24-361 22-375 (720)
49 KOG0345 ATP-dependent RNA heli 100.0 2.9E-31 6.2E-36 259.3 20.1 294 24-361 27-353 (567)
50 KOG0333 U5 snRNP-like RNA heli 100.0 1E-30 2.2E-35 258.2 22.4 310 24-392 266-631 (673)
51 PRK01172 ski2-like helicase; P 100.0 2E-30 4.3E-35 284.5 25.1 296 22-361 19-365 (674)
52 KOG0328 Predicted ATP-dependen 100.0 6.9E-31 1.5E-35 241.2 17.1 307 25-389 49-377 (400)
53 KOG0350 DEAD-box ATP-dependent 100.0 7.8E-31 1.7E-35 257.8 18.3 326 23-386 157-541 (620)
54 KOG0340 ATP-dependent RNA heli 100.0 9.2E-30 2E-34 240.8 23.3 316 24-389 28-365 (442)
55 TIGR00348 hsdR type I site-spe 100.0 9.3E-30 2E-34 276.2 26.9 342 23-383 236-649 (667)
56 KOG0342 ATP-dependent RNA heli 100.0 1E-30 2.3E-35 257.1 17.5 293 24-361 103-426 (543)
57 KOG0338 ATP-dependent RNA heli 100.0 2.1E-30 4.5E-35 255.1 19.3 308 24-386 202-534 (691)
58 KOG0343 RNA Helicase [RNA proc 100.0 1.7E-30 3.8E-35 257.8 17.2 293 24-361 90-411 (758)
59 COG0514 RecQ Superfamily II DN 100.0 7.2E-29 1.6E-33 256.8 28.9 288 24-361 16-326 (590)
60 COG4096 HsdR Type I site-speci 100.0 5.9E-30 1.3E-34 267.0 20.0 346 2-361 141-527 (875)
61 COG1201 Lhr Lhr-like helicases 100.0 3.8E-29 8.1E-34 267.8 25.0 299 23-360 20-350 (814)
62 KOG0348 ATP-dependent RNA heli 100.0 1.8E-29 3.9E-34 249.9 16.9 318 25-361 159-543 (708)
63 COG1197 Mfd Transcription-repa 100.0 5.3E-28 1.1E-32 262.4 29.5 328 20-415 589-946 (1139)
64 COG1204 Superfamily II helicas 100.0 5.4E-29 1.2E-33 269.9 21.2 300 25-361 31-395 (766)
65 TIGR01587 cas3_core CRISPR-ass 100.0 7.9E-28 1.7E-32 245.3 26.7 293 46-385 2-338 (358)
66 KOG0335 ATP-dependent RNA heli 100.0 1.9E-28 4.1E-33 245.1 19.4 297 23-361 94-433 (482)
67 TIGR02621 cas3_GSU0051 CRISPR- 100.0 2.2E-27 4.9E-32 255.6 28.8 301 23-361 13-379 (844)
68 KOG0336 ATP-dependent RNA heli 100.0 9.7E-29 2.1E-33 237.4 15.7 294 25-361 242-561 (629)
69 COG1200 RecG RecG-like helicas 100.0 3.7E-27 8E-32 243.4 27.5 321 23-409 260-613 (677)
70 COG1202 Superfamily II helicas 100.0 2.8E-28 6.1E-33 243.3 17.9 351 23-440 214-600 (830)
71 TIGR03158 cas3_cyano CRISPR-as 100.0 5.5E-27 1.2E-31 237.4 25.4 292 29-357 1-357 (357)
72 KOG0326 ATP-dependent RNA heli 100.0 3.2E-28 6.9E-33 227.2 14.1 303 25-386 107-430 (459)
73 KOG0341 DEAD-box protein abstr 100.0 4.3E-28 9.2E-33 231.5 12.2 308 23-389 190-532 (610)
74 PRK09751 putative ATP-dependen 100.0 1.4E-26 3E-31 262.8 25.6 288 48-360 1-372 (1490)
75 COG0553 HepA Superfamily II DN 99.9 2E-26 4.4E-31 261.6 25.9 353 23-398 336-835 (866)
76 KOG0347 RNA helicase [RNA proc 99.9 6.2E-28 1.3E-32 239.7 11.3 313 25-361 203-559 (731)
77 KOG0339 ATP-dependent RNA heli 99.9 4.5E-27 9.9E-32 231.4 17.2 306 24-388 244-578 (731)
78 PHA02653 RNA helicase NPH-II; 99.9 1.4E-25 3E-30 240.4 29.1 287 29-360 168-503 (675)
79 KOG0332 ATP-dependent RNA heli 99.9 1.2E-25 2.5E-30 214.3 21.5 321 25-399 112-456 (477)
80 KOG0344 ATP-dependent RNA heli 99.9 2.9E-26 6.2E-31 230.9 16.0 296 24-361 157-484 (593)
81 TIGR01970 DEAH_box_HrpB ATP-de 99.9 6.8E-25 1.5E-29 240.4 27.6 269 45-360 19-325 (819)
82 PRK09401 reverse gyrase; Revie 99.9 3.9E-25 8.5E-30 250.2 25.6 282 23-360 78-432 (1176)
83 PRK11664 ATP-dependent RNA hel 99.9 1.2E-24 2.6E-29 239.0 28.5 270 45-360 22-328 (812)
84 KOG4284 DEAD box protein [Tran 99.9 2.7E-26 5.8E-31 231.5 13.8 298 24-361 46-368 (980)
85 KOG0952 DNA/RNA helicase MER3/ 99.9 2.2E-25 4.8E-30 236.0 20.9 323 26-392 111-498 (1230)
86 COG1205 Distinct helicase fami 99.9 1.1E-24 2.4E-29 239.6 27.4 332 25-400 70-437 (851)
87 COG4098 comFA Superfamily II D 99.9 2.3E-24 5E-29 203.7 25.4 325 20-404 92-435 (441)
88 KOG0346 RNA helicase [RNA proc 99.9 2.6E-25 5.6E-30 215.9 18.8 307 25-386 41-411 (569)
89 TIGR03714 secA2 accessory Sec 99.9 6E-25 1.3E-29 234.6 19.7 322 24-361 67-526 (762)
90 PRK05580 primosome assembly pr 99.9 5.3E-24 1.2E-28 231.5 27.1 295 22-360 141-537 (679)
91 COG4889 Predicted helicase [Ge 99.9 1E-24 2.2E-29 226.0 15.1 336 17-364 153-577 (1518)
92 TIGR00595 priA primosomal prot 99.9 1.2E-23 2.7E-28 220.9 22.6 268 47-361 1-370 (505)
93 KOG0352 ATP-dependent DNA heli 99.9 1.5E-23 3.2E-28 202.9 18.8 313 27-386 22-366 (641)
94 KOG0337 ATP-dependent RNA heli 99.9 1.9E-24 4.1E-29 209.0 12.6 305 24-386 42-369 (529)
95 TIGR00963 secA preprotein tran 99.9 5.6E-24 1.2E-28 225.8 17.3 328 24-361 53-506 (745)
96 KOG0334 RNA helicase [RNA proc 99.9 8.3E-24 1.8E-28 225.9 18.2 306 25-384 387-719 (997)
97 KOG0351 ATP-dependent DNA heli 99.9 1.1E-23 2.3E-28 230.4 18.1 302 24-382 263-592 (941)
98 KOG1016 Predicted DNA helicase 99.9 1.1E-23 2.4E-28 215.7 16.7 375 24-415 253-876 (1387)
99 PRK09200 preprotein translocas 99.9 3.4E-23 7.5E-28 223.2 21.5 322 25-361 76-530 (790)
100 PRK12898 secA preprotein trans 99.9 8.4E-23 1.8E-27 215.8 21.9 323 23-361 101-575 (656)
101 TIGR01054 rgy reverse gyrase. 99.9 1.9E-22 4.1E-27 228.8 25.1 264 23-342 76-408 (1171)
102 PRK14701 reverse gyrase; Provi 99.9 1.5E-22 3.2E-27 234.0 23.1 284 23-361 77-445 (1638)
103 TIGR01967 DEAH_box_HrpA ATP-de 99.9 1.7E-21 3.8E-26 218.7 28.4 293 23-361 65-394 (1283)
104 PRK11131 ATP-dependent RNA hel 99.9 2.5E-21 5.4E-26 216.7 29.1 293 18-360 67-400 (1294)
105 PRK09694 helicase Cas3; Provis 99.9 1.6E-21 3.5E-26 214.0 25.7 311 23-362 284-665 (878)
106 KOG0327 Translation initiation 99.9 1.8E-22 3.9E-27 194.2 14.4 303 25-387 48-372 (397)
107 KOG0353 ATP-dependent DNA heli 99.9 1.8E-21 3.8E-26 185.9 19.9 282 25-351 94-403 (695)
108 COG0556 UvrB Helicase subunit 99.9 1.1E-20 2.3E-25 188.4 23.3 95 266-361 444-547 (663)
109 KOG0947 Cytoplasmic exosomal R 99.9 1.3E-21 2.7E-26 205.5 17.3 316 20-361 292-710 (1248)
110 KOG0951 RNA helicase BRR2, DEA 99.9 2E-21 4.4E-26 208.6 18.4 304 23-361 307-689 (1674)
111 PF04851 ResIII: Type III rest 99.9 3.9E-21 8.4E-26 176.6 12.7 160 23-183 1-184 (184)
112 TIGR00631 uvrb excinuclease AB 99.9 1.9E-19 4E-24 193.9 27.3 94 266-360 440-542 (655)
113 KOG1001 Helicase-like transcri 99.9 7.5E-21 1.6E-25 202.7 16.3 344 30-399 135-664 (674)
114 COG4581 Superfamily II RNA hel 99.9 6.9E-20 1.5E-24 199.6 23.8 316 21-361 115-524 (1041)
115 KOG0948 Nuclear exosomal RNA h 99.8 1.2E-20 2.7E-25 193.7 16.1 327 23-384 127-538 (1041)
116 PF00176 SNF2_N: SNF2 family N 99.8 1.4E-19 3E-24 179.8 18.2 198 29-234 1-258 (299)
117 KOG0950 DNA polymerase theta/e 99.8 3.8E-19 8.2E-24 188.3 17.9 311 24-361 222-598 (1008)
118 PRK13104 secA preprotein trans 99.8 4.8E-18 1E-22 183.3 26.2 116 251-381 428-586 (896)
119 PRK12906 secA preprotein trans 99.8 1.1E-18 2.4E-23 187.3 19.0 106 251-361 424-542 (796)
120 KOG0922 DEAH-box RNA helicase 99.8 9.3E-18 2E-22 172.4 24.0 330 27-419 53-433 (674)
121 PRK12904 preprotein translocas 99.8 2.7E-18 5.7E-23 185.1 20.1 304 45-361 96-562 (830)
122 PRK05298 excinuclease ABC subu 99.8 7.8E-17 1.7E-21 174.9 30.1 94 266-360 444-546 (652)
123 COG1203 CRISPR-associated heli 99.8 9.8E-18 2.1E-22 184.4 21.5 301 25-361 195-537 (733)
124 COG1198 PriA Primosomal protei 99.8 3.5E-17 7.5E-22 175.0 23.0 310 23-360 196-591 (730)
125 COG1643 HrpA HrpA-like helicas 99.8 1.7E-16 3.7E-21 172.2 27.0 334 25-419 50-431 (845)
126 PRK13107 preprotein translocas 99.7 1.3E-16 2.7E-21 171.9 22.7 116 251-381 433-590 (908)
127 KOG0329 ATP-dependent RNA heli 99.7 1.2E-17 2.5E-22 152.2 11.0 259 26-361 65-344 (387)
128 COG0610 Type I site-specific r 99.7 2E-16 4.3E-21 177.3 22.7 328 26-362 249-639 (962)
129 cd00268 DEADc DEAD-box helicas 99.7 2.9E-17 6.2E-22 153.8 13.1 149 24-183 20-186 (203)
130 PF00270 DEAD: DEAD/DEAH box h 99.7 1.2E-16 2.7E-21 144.7 14.0 145 27-182 1-163 (169)
131 KOG0923 mRNA splicing factor A 99.7 2.5E-15 5.3E-20 153.4 18.9 290 25-362 265-597 (902)
132 smart00487 DEXDc DEAD-like hel 99.7 1E-15 2.3E-20 141.5 14.7 153 22-184 5-173 (201)
133 cd00046 DEXDc DEAD-like helica 99.7 4.7E-16 1E-20 135.4 10.8 128 45-181 2-144 (144)
134 PRK12899 secA preprotein trans 99.7 2.4E-14 5.2E-19 154.8 25.4 131 24-158 91-228 (970)
135 TIGR01407 dinG_rel DnaQ family 99.6 2.7E-14 5.8E-19 160.4 25.3 103 255-360 662-802 (850)
136 KOG0924 mRNA splicing factor A 99.6 1.1E-14 2.4E-19 149.0 19.4 289 45-392 373-704 (1042)
137 KOG0949 Predicted helicase, DE 99.6 2.9E-14 6.2E-19 151.1 22.5 153 24-185 510-675 (1330)
138 KOG0926 DEAH-box RNA helicase 99.6 1.7E-14 3.7E-19 149.8 20.2 138 32-185 263-428 (1172)
139 cd00079 HELICc Helicase superf 99.6 2.4E-15 5.3E-20 129.9 11.3 108 251-361 12-124 (131)
140 PRK12900 secA preprotein trans 99.6 1.9E-14 4.2E-19 155.9 20.3 106 251-361 582-700 (1025)
141 COG1110 Reverse gyrase [DNA re 99.6 1.1E-13 2.5E-18 148.0 22.4 263 23-342 80-416 (1187)
142 KOG0383 Predicted helicase [Ge 99.6 3.1E-16 6.7E-21 165.4 2.8 289 23-327 293-696 (696)
143 KOG0349 Putative DEAD-box RNA 99.6 4.4E-15 9.5E-20 144.7 9.9 284 70-386 288-616 (725)
144 PRK12326 preprotein translocas 99.6 1.8E-13 4E-18 144.5 21.0 129 24-158 77-211 (764)
145 PF00271 Helicase_C: Helicase 99.6 5.5E-15 1.2E-19 115.8 5.7 69 290-360 10-78 (78)
146 KOG0920 ATP-dependent RNA heli 99.5 5.1E-13 1.1E-17 144.9 22.4 315 25-388 173-547 (924)
147 PRK13103 secA preprotein trans 99.5 3.6E-12 7.8E-17 138.0 25.1 129 26-158 81-215 (913)
148 PRK15483 type III restriction- 99.5 1E-11 2.2E-16 136.1 27.8 170 45-218 61-278 (986)
149 PRK07246 bifunctional ATP-depe 99.5 9.7E-12 2.1E-16 138.2 26.2 66 22-89 242-313 (820)
150 KOG0953 Mitochondrial RNA heli 99.4 2E-12 4.3E-17 130.2 15.8 249 46-362 194-464 (700)
151 KOG0925 mRNA splicing factor A 99.4 1.6E-11 3.5E-16 121.9 20.7 280 30-362 51-378 (699)
152 PRK12903 secA preprotein trans 99.4 4.4E-12 9.6E-17 136.0 17.1 114 251-381 410-538 (925)
153 smart00490 HELICc helicase sup 99.4 1.5E-12 3.2E-17 102.5 7.2 69 290-360 14-82 (82)
154 TIGR02562 cas3_yersinia CRISPR 99.3 3.6E-10 7.9E-15 123.7 24.5 323 25-363 408-883 (1110)
155 PF07652 Flavi_DEAD: Flaviviru 99.3 1.3E-11 2.8E-16 105.3 10.1 126 45-185 6-140 (148)
156 CHL00122 secA preprotein trans 99.3 1.1E-10 2.3E-15 126.1 19.3 110 45-158 91-209 (870)
157 PRK08074 bifunctional ATP-depe 99.2 2.4E-09 5.2E-14 121.3 26.7 104 255-360 740-881 (928)
158 PRK12902 secA preprotein trans 99.2 1.4E-10 3E-15 125.1 15.0 126 26-158 84-218 (939)
159 PRK14873 primosome assembly pr 99.2 4.9E-10 1.1E-14 121.1 17.0 121 45-182 162-304 (665)
160 PRK12901 secA preprotein trans 99.2 4.6E-09 1E-13 114.7 22.3 128 24-158 166-303 (1112)
161 PF13872 AAA_34: P-loop contai 99.1 2.5E-09 5.4E-14 102.8 17.2 210 23-233 35-300 (303)
162 COG3587 Restriction endonuclea 99.1 2.4E-09 5.1E-14 113.4 17.3 166 45-221 76-272 (985)
163 COG3421 Uncharacterized protei 99.1 4.2E-09 9.1E-14 107.5 16.4 167 48-218 2-199 (812)
164 PF02399 Herpes_ori_bp: Origin 99.1 1.2E-08 2.6E-13 109.4 20.4 290 45-361 51-378 (824)
165 COG1199 DinG Rad3-related DNA 99.1 9.7E-09 2.1E-13 113.2 20.2 67 21-89 11-84 (654)
166 KOG4150 Predicted ATP-dependen 99.0 1.6E-09 3.5E-14 109.5 12.3 325 26-399 287-654 (1034)
167 TIGR00604 rad3 DNA repair heli 99.0 1.9E-07 4.2E-12 103.3 26.9 66 25-90 10-82 (705)
168 KOG0951 RNA helicase BRR2, DEA 98.9 7.1E-08 1.5E-12 105.8 19.0 271 44-361 1160-1486(1674)
169 COG0653 SecA Preprotein transl 98.7 7.7E-08 1.7E-12 103.9 10.9 128 24-158 77-213 (822)
170 TIGR00596 rad1 DNA repair prot 98.7 1.6E-06 3.5E-11 95.7 20.4 66 111-184 5-75 (814)
171 TIGR03117 cas_csf4 CRISPR-asso 98.6 2E-07 4.3E-12 99.9 11.4 86 255-343 458-561 (636)
172 KOG0298 DEAD box-containing he 98.6 6.8E-08 1.5E-12 106.4 7.6 150 44-195 375-564 (1394)
173 PF13086 AAA_11: AAA domain; P 98.5 4.6E-07 1E-11 86.2 10.4 63 25-90 1-75 (236)
174 KOG1513 Nuclear helicase MOP-3 98.5 1.1E-06 2.5E-11 92.4 11.9 257 22-288 261-580 (1300)
175 PF02562 PhoH: PhoH-like prote 98.4 9E-07 2E-11 81.7 8.9 136 26-187 5-161 (205)
176 PF13604 AAA_30: AAA domain; P 98.4 4.1E-06 9E-11 77.7 12.0 128 25-183 1-132 (196)
177 PF07517 SecA_DEAD: SecA DEAD- 98.2 2.8E-06 6.1E-11 81.7 7.2 126 24-158 76-210 (266)
178 PRK10536 hypothetical protein; 98.1 4.7E-06 1E-10 79.1 6.8 149 21-187 55-218 (262)
179 PRK11747 dinG ATP-dependent DN 98.1 8E-06 1.7E-10 90.1 9.7 64 22-85 22-95 (697)
180 PF13401 AAA_22: AAA domain; P 98.0 2.9E-05 6.4E-10 66.7 9.5 111 44-182 5-126 (131)
181 KOG1803 DNA helicase [Replicat 98.0 1.5E-05 3.3E-10 82.5 8.5 65 23-89 183-250 (649)
182 KOG1802 RNA helicase nonsense 98.0 2.1E-05 4.5E-10 81.9 8.1 65 24-91 409-477 (935)
183 TIGR01448 recD_rel helicase, p 97.9 0.00014 3E-09 80.6 14.7 130 22-183 320-454 (720)
184 TIGR01447 recD exodeoxyribonuc 97.9 6.7E-05 1.5E-09 80.7 11.1 141 28-183 148-297 (586)
185 PF13307 Helicase_C_2: Helicas 97.9 7.4E-05 1.6E-09 67.4 9.8 92 266-360 7-138 (167)
186 PF09848 DUF2075: Uncharacteri 97.9 4E-05 8.6E-10 77.9 8.9 90 45-159 3-97 (352)
187 TIGR00376 DNA helicase, putati 97.9 0.00015 3.2E-09 79.2 13.5 66 24-91 156-224 (637)
188 PRK10875 recD exonuclease V su 97.8 9.5E-05 2.1E-09 79.8 10.4 144 26-183 153-303 (615)
189 smart00488 DEXDc2 DEAD-like he 97.8 7.6E-05 1.6E-09 73.5 8.9 68 22-91 5-84 (289)
190 smart00489 DEXDc3 DEAD-like he 97.8 7.6E-05 1.6E-09 73.5 8.9 68 22-91 5-84 (289)
191 PF12340 DUF3638: Protein of u 97.8 0.00013 2.7E-09 68.2 9.7 142 16-160 14-187 (229)
192 KOG0298 DEAD box-containing he 97.8 2.5E-05 5.4E-10 86.8 5.6 110 266-392 1219-1333(1394)
193 COG2256 MGS1 ATPase related to 97.7 0.00025 5.5E-09 70.5 11.2 104 33-182 38-141 (436)
194 PF13871 Helicase_C_4: Helicas 97.6 0.00027 5.8E-09 68.2 9.4 88 303-404 51-147 (278)
195 PF13245 AAA_19: Part of AAA d 97.6 0.00016 3.4E-09 55.9 6.3 54 33-88 2-62 (76)
196 COG1875 NYN ribonuclease and A 97.6 0.00018 3.9E-09 70.6 8.0 144 28-187 231-393 (436)
197 cd00009 AAA The AAA+ (ATPases 97.6 0.0012 2.5E-08 57.2 12.6 49 30-78 6-57 (151)
198 PRK04296 thymidine kinase; Pro 97.5 0.00043 9.3E-09 63.8 7.9 32 45-76 4-38 (190)
199 PRK13342 recombination factor 97.4 0.0013 2.8E-08 68.4 11.9 102 34-181 27-128 (413)
200 PRK06526 transposase; Provisio 97.4 0.00066 1.4E-08 65.5 8.8 96 44-183 99-203 (254)
201 KOG0921 Dosage compensation co 97.3 0.0016 3.4E-08 70.5 11.3 300 45-361 395-764 (1282)
202 PRK08181 transposase; Validate 97.3 0.0019 4.2E-08 62.6 10.6 54 26-82 88-147 (269)
203 PF06862 DUF1253: Protein of u 97.3 0.012 2.5E-07 60.7 16.6 93 266-360 298-397 (442)
204 TIGR03015 pepcterm_ATPase puta 97.3 0.0071 1.5E-07 58.9 14.5 44 25-68 23-68 (269)
205 KOG1805 DNA replication helica 97.3 0.00096 2.1E-08 72.8 8.8 121 24-162 668-813 (1100)
206 PRK12723 flagellar biosynthesi 97.2 0.0031 6.7E-08 64.4 11.9 111 44-185 175-301 (388)
207 KOG0952 DNA/RNA helicase MER3/ 97.2 0.00031 6.7E-09 77.1 4.8 110 45-160 945-1061(1230)
208 TIGR02768 TraA_Ti Ti-type conj 97.2 0.0018 3.8E-08 72.2 10.9 124 22-181 349-476 (744)
209 PRK05707 DNA polymerase III su 97.2 0.0024 5.3E-08 63.9 10.9 44 25-68 3-47 (328)
210 PRK13341 recombination factor 97.2 0.0025 5.5E-08 70.3 11.5 39 33-71 42-80 (725)
211 KOG1132 Helicase of the DEAD s 97.2 0.0018 3.8E-08 70.3 9.4 42 20-61 16-58 (945)
212 smart00382 AAA ATPases associa 97.2 0.0015 3.3E-08 55.9 7.6 36 44-79 3-41 (148)
213 PF00448 SRP54: SRP54-type pro 97.1 0.0068 1.5E-07 56.1 11.7 116 45-185 3-129 (196)
214 PF05496 RuvB_N: Holliday junc 97.1 0.003 6.4E-08 58.9 9.0 31 44-74 51-81 (233)
215 PRK12323 DNA polymerase III su 97.1 0.0037 8.1E-08 67.0 10.9 41 28-68 22-63 (700)
216 PRK13889 conjugal transfer rel 97.1 0.0025 5.4E-08 72.2 10.1 125 23-183 344-472 (988)
217 PLN03025 replication factor C 97.0 0.0047 1E-07 61.9 10.7 41 28-68 19-59 (319)
218 KOG0739 AAA+-type ATPase [Post 97.0 0.0056 1.2E-07 58.7 10.3 53 38-91 159-213 (439)
219 PRK14956 DNA polymerase III su 97.0 0.0052 1.1E-07 64.0 10.7 38 32-69 28-66 (484)
220 PRK07003 DNA polymerase III su 97.0 0.0062 1.4E-07 66.3 11.4 40 29-68 23-63 (830)
221 TIGR02881 spore_V_K stage V sp 97.0 0.0038 8.3E-08 60.6 9.1 24 44-67 43-66 (261)
222 PHA02544 44 clamp loader, smal 97.0 0.0091 2E-07 59.7 12.1 53 25-77 24-77 (316)
223 PRK14960 DNA polymerase III su 96.9 0.0076 1.6E-07 64.8 11.7 42 28-69 21-63 (702)
224 PRK14958 DNA polymerase III su 96.9 0.007 1.5E-07 64.4 11.5 40 29-68 23-63 (509)
225 PF05970 PIF1: PIF1-like helic 96.9 0.0031 6.8E-08 64.3 8.6 114 25-165 1-122 (364)
226 KOG2028 ATPase related to the 96.8 0.0066 1.4E-07 59.8 9.4 104 34-182 153-259 (554)
227 PRK14962 DNA polymerase III su 96.8 0.0094 2E-07 62.7 10.6 41 28-68 20-61 (472)
228 PRK13826 Dtr system oriT relax 96.7 0.0074 1.6E-07 69.0 10.1 126 22-183 378-507 (1102)
229 PRK14949 DNA polymerase III su 96.7 0.0092 2E-07 66.2 10.5 36 34-69 28-64 (944)
230 PRK12402 replication factor C 96.6 0.024 5.1E-07 57.2 12.4 43 26-68 19-61 (337)
231 PRK08084 DNA replication initi 96.6 0.019 4.1E-07 54.8 10.7 44 31-74 33-79 (235)
232 PRK08727 hypothetical protein; 96.6 0.029 6.3E-07 53.4 11.9 32 44-75 42-76 (233)
233 PRK07994 DNA polymerase III su 96.6 0.017 3.8E-07 62.6 11.3 40 30-69 24-64 (647)
234 KOG0989 Replication factor C, 96.6 0.0041 8.9E-08 60.0 5.7 41 29-69 40-83 (346)
235 PHA02533 17 large terminase pr 96.5 0.023 5E-07 60.7 12.0 143 23-183 57-211 (534)
236 PF02456 Adeno_IVa2: Adenoviru 96.5 0.14 3.1E-06 49.6 15.9 103 46-154 90-205 (369)
237 PRK14964 DNA polymerase III su 96.5 0.019 4.2E-07 60.3 11.1 125 29-181 20-155 (491)
238 PRK14951 DNA polymerase III su 96.5 0.018 3.9E-07 62.3 11.1 37 32-68 26-63 (618)
239 PRK11747 dinG ATP-dependent DN 96.5 0.021 4.6E-07 63.3 11.4 101 255-360 523-662 (697)
240 PHA03333 putative ATPase subun 96.4 0.023 5.1E-07 61.0 11.0 146 27-186 171-336 (752)
241 PRK06645 DNA polymerase III su 96.4 0.022 4.8E-07 60.3 10.7 39 30-68 26-68 (507)
242 PRK11889 flhF flagellar biosyn 96.4 0.044 9.5E-07 55.6 12.1 112 44-185 242-366 (436)
243 PRK07952 DNA replication prote 96.4 0.046 9.9E-07 52.3 11.8 58 28-90 79-144 (244)
244 PRK14969 DNA polymerase III su 96.4 0.036 7.7E-07 59.4 12.2 41 28-68 22-63 (527)
245 PRK14959 DNA polymerase III su 96.4 0.027 5.9E-07 60.7 11.2 41 28-68 22-63 (624)
246 PRK07764 DNA polymerase III su 96.4 0.027 5.8E-07 63.2 11.6 41 28-68 21-62 (824)
247 PF00004 AAA: ATPase family as 96.4 0.017 3.7E-07 49.2 8.1 34 46-79 1-34 (132)
248 PRK09111 DNA polymerase III su 96.3 0.026 5.6E-07 61.1 10.9 41 28-68 30-71 (598)
249 PF13177 DNA_pol3_delta2: DNA 96.3 0.083 1.8E-06 47.3 12.5 127 30-181 2-141 (162)
250 PRK14952 DNA polymerase III su 96.3 0.034 7.4E-07 59.9 11.7 41 28-68 19-60 (584)
251 TIGR03420 DnaA_homol_Hda DnaA 96.3 0.023 5E-07 53.7 9.4 37 31-67 26-62 (226)
252 PRK08691 DNA polymerase III su 96.3 0.041 9E-07 59.8 12.0 41 29-69 23-64 (709)
253 PRK14961 DNA polymerase III su 96.3 0.051 1.1E-06 55.5 12.3 39 30-68 21-63 (363)
254 smart00492 HELICc3 helicase su 96.3 0.029 6.3E-07 48.9 8.9 49 291-339 25-75 (141)
255 PF05621 TniB: Bacterial TniB 96.3 0.046 1E-06 53.3 11.0 131 24-182 36-190 (302)
256 PRK07940 DNA polymerase III su 96.2 0.043 9.4E-07 56.4 11.5 26 43-68 36-61 (394)
257 PF01443 Viral_helicase1: Vira 96.2 0.0096 2.1E-07 56.6 6.4 99 46-183 1-99 (234)
258 TIGR00635 ruvB Holliday juncti 96.2 0.03 6.6E-07 55.6 10.1 43 28-70 10-57 (305)
259 PF00580 UvrD-helicase: UvrD/R 96.2 0.011 2.4E-07 58.6 7.1 62 26-92 1-69 (315)
260 PRK06835 DNA replication prote 96.2 0.066 1.4E-06 53.6 12.2 59 24-83 159-225 (329)
261 PRK14974 cell division protein 96.2 0.063 1.4E-06 53.8 12.0 113 44-182 141-265 (336)
262 KOG1131 RNA polymerase II tran 96.2 0.08 1.7E-06 54.6 12.5 40 23-64 14-56 (755)
263 PRK14955 DNA polymerase III su 96.1 0.042 9.2E-07 56.8 11.0 41 29-69 23-64 (397)
264 PRK11034 clpA ATP-dependent Cl 96.1 0.035 7.7E-07 61.7 11.0 92 45-169 490-581 (758)
265 PRK08116 hypothetical protein; 96.1 0.065 1.4E-06 52.2 11.7 42 45-87 116-160 (268)
266 PRK14963 DNA polymerase III su 96.1 0.045 9.8E-07 58.2 11.3 39 30-68 19-61 (504)
267 PRK05896 DNA polymerase III su 96.1 0.024 5.3E-07 60.8 9.3 41 28-68 22-63 (605)
268 PRK06893 DNA replication initi 96.1 0.05 1.1E-06 51.7 10.6 31 45-75 41-74 (229)
269 TIGR03877 thermo_KaiC_1 KaiC d 96.1 0.06 1.3E-06 51.5 11.1 60 31-91 7-71 (237)
270 smart00491 HELICc2 helicase su 96.0 0.026 5.6E-07 49.3 7.5 40 300-339 31-76 (142)
271 COG1484 DnaC DNA replication p 96.0 0.088 1.9E-06 50.8 11.8 49 42-90 104-154 (254)
272 KOG0738 AAA+-type ATPase [Post 96.0 0.024 5.1E-07 56.5 7.8 47 44-91 246-292 (491)
273 TIGR02639 ClpA ATP-dependent C 96.0 0.046 9.9E-07 61.2 11.1 32 36-67 196-227 (731)
274 PRK00080 ruvB Holliday junctio 95.9 0.055 1.2E-06 54.5 10.5 47 25-71 28-79 (328)
275 PRK14957 DNA polymerase III su 95.9 0.076 1.7E-06 56.7 11.9 37 32-68 26-63 (546)
276 COG0542 clpA ATP-binding subun 95.9 0.069 1.5E-06 58.7 11.5 109 30-170 496-618 (786)
277 PRK12377 putative replication 95.9 0.051 1.1E-06 52.1 9.5 43 44-87 102-147 (248)
278 KOG0991 Replication factor C, 95.9 0.0099 2.2E-07 55.1 4.3 31 39-69 44-74 (333)
279 PRK10919 ATP-dependent DNA hel 95.9 0.035 7.7E-07 61.4 9.4 81 25-126 2-89 (672)
280 PRK04195 replication factor C 95.8 0.077 1.7E-06 56.4 11.6 52 25-76 17-72 (482)
281 PRK14965 DNA polymerase III su 95.8 0.076 1.6E-06 57.6 11.6 41 28-68 22-63 (576)
282 PRK04328 hypothetical protein; 95.8 0.1 2.2E-06 50.3 11.4 59 32-91 10-73 (249)
283 cd01121 Sms Sms (bacterial rad 95.8 0.069 1.5E-06 54.5 10.6 99 31-158 68-171 (372)
284 PF05876 Terminase_GpA: Phage 95.8 0.05 1.1E-06 58.7 10.1 147 23-185 14-183 (557)
285 cd01124 KaiC KaiC is a circadi 95.8 0.067 1.4E-06 48.8 9.6 45 46-91 2-49 (187)
286 PRK05642 DNA replication initi 95.8 0.077 1.7E-06 50.6 10.3 32 44-75 46-80 (234)
287 PRK05563 DNA polymerase III su 95.8 0.099 2.1E-06 56.4 12.1 42 27-68 21-63 (559)
288 PF00265 TK: Thymidine kinase; 95.8 0.1 2.3E-06 47.2 10.5 34 46-79 4-40 (176)
289 PHA02244 ATPase-like protein 95.8 0.11 2.4E-06 52.3 11.5 44 30-75 108-151 (383)
290 PRK06871 DNA polymerase III su 95.7 0.1 2.3E-06 52.0 11.3 43 25-67 2-48 (325)
291 PRK14948 DNA polymerase III su 95.7 0.1 2.2E-06 56.9 11.8 37 33-69 27-64 (620)
292 TIGR03117 cas_csf4 CRISPR-asso 95.7 0.11 2.4E-06 56.4 11.9 61 30-92 2-70 (636)
293 PRK06921 hypothetical protein; 95.7 0.053 1.2E-06 52.7 8.7 39 44-83 118-160 (266)
294 PRK14722 flhF flagellar biosyn 95.6 0.14 3E-06 52.1 11.9 111 44-185 138-261 (374)
295 TIGR02760 TraI_TIGR conjugativ 95.6 0.12 2.5E-06 63.7 13.3 137 23-182 427-567 (1960)
296 PRK00149 dnaA chromosomal repl 95.6 0.11 2.3E-06 54.8 11.6 40 44-84 149-193 (450)
297 PRK03992 proteasome-activating 95.6 0.041 8.8E-07 56.7 8.3 35 42-76 164-198 (389)
298 PRK08769 DNA polymerase III su 95.6 0.1 2.2E-06 52.0 10.7 44 24-67 3-50 (319)
299 PRK00440 rfc replication facto 95.6 0.18 3.8E-06 50.3 12.6 42 27-68 22-63 (319)
300 PRK14712 conjugal transfer nic 95.6 0.21 4.6E-06 59.4 14.6 127 24-182 834-968 (1623)
301 CHL00181 cbbX CbbX; Provisiona 95.6 0.061 1.3E-06 52.9 8.9 23 45-67 61-83 (287)
302 PRK11054 helD DNA helicase IV; 95.6 0.028 6E-07 62.0 7.1 80 23-126 194-280 (684)
303 PRK11823 DNA repair protein Ra 95.6 0.093 2E-06 55.0 10.7 99 31-158 66-169 (446)
304 TIGR00362 DnaA chromosomal rep 95.5 0.11 2.4E-06 53.9 11.1 31 45-75 138-173 (405)
305 TIGR01075 uvrD DNA helicase II 95.4 0.058 1.3E-06 60.3 9.2 81 25-127 4-91 (715)
306 PRK13709 conjugal transfer nic 95.4 0.15 3.3E-06 61.3 12.9 127 24-182 966-1100(1747)
307 TIGR02928 orc1/cdc6 family rep 95.4 0.19 4.1E-06 51.2 12.3 45 23-67 16-64 (365)
308 cd01120 RecA-like_NTPases RecA 95.4 0.076 1.6E-06 46.8 8.3 35 46-80 2-39 (165)
309 COG1222 RPT1 ATP-dependent 26S 95.4 0.05 1.1E-06 53.8 7.3 76 42-160 184-259 (406)
310 COG1419 FlhF Flagellar GTP-bin 95.4 0.41 8.9E-06 48.6 13.9 113 43-187 203-329 (407)
311 PRK06964 DNA polymerase III su 95.4 0.14 3.1E-06 51.4 10.8 42 26-67 2-45 (342)
312 PF13173 AAA_14: AAA domain 95.4 0.17 3.7E-06 43.2 10.0 31 44-74 3-35 (128)
313 TIGR01650 PD_CobS cobaltochela 95.3 0.28 6.1E-06 48.8 12.5 56 21-78 44-99 (327)
314 PTZ00293 thymidine kinase; Pro 95.3 0.13 2.9E-06 47.7 9.6 35 45-79 6-43 (211)
315 PRK06647 DNA polymerase III su 95.3 0.17 3.7E-06 54.6 11.9 40 29-68 23-63 (563)
316 PRK11773 uvrD DNA-dependent he 95.3 0.07 1.5E-06 59.7 9.2 81 25-127 9-96 (721)
317 PRK09112 DNA polymerase III su 95.3 0.2 4.3E-06 50.8 11.7 39 30-68 28-70 (351)
318 PRK06067 flagellar accessory p 95.3 0.11 2.4E-06 49.4 9.5 60 31-91 11-75 (234)
319 PRK00411 cdc6 cell division co 95.3 0.28 6E-06 50.7 13.1 45 23-67 31-79 (394)
320 PTZ00454 26S protease regulato 95.2 0.069 1.5E-06 55.0 8.3 35 42-76 178-212 (398)
321 TIGR02760 TraI_TIGR conjugativ 95.2 0.098 2.1E-06 64.3 10.9 126 23-182 1017-1150(1960)
322 TIGR02012 tigrfam_recA protein 95.2 0.12 2.5E-06 51.5 9.6 54 30-83 39-98 (321)
323 PRK08451 DNA polymerase III su 95.2 0.24 5.1E-06 52.8 12.3 37 31-67 23-60 (535)
324 PHA03368 DNA packaging termina 95.2 0.15 3.2E-06 54.8 10.6 127 41-182 252-391 (738)
325 PRK05703 flhF flagellar biosyn 95.2 0.22 4.7E-06 51.9 11.8 112 44-184 222-345 (424)
326 PRK14953 DNA polymerase III su 95.2 0.18 3.9E-06 53.4 11.3 36 33-68 27-63 (486)
327 TIGR01074 rep ATP-dependent DN 95.1 0.11 2.4E-06 57.6 10.3 81 26-127 2-89 (664)
328 cd00983 recA RecA is a bacter 95.0 0.11 2.5E-06 51.6 8.9 57 28-84 37-99 (325)
329 PRK07133 DNA polymerase III su 95.0 0.2 4.4E-06 55.0 11.5 40 29-68 25-65 (725)
330 CHL00095 clpC Clp protease ATP 95.0 0.06 1.3E-06 61.0 7.8 41 27-67 184-224 (821)
331 PRK06090 DNA polymerase III su 95.0 0.25 5.5E-06 49.2 11.1 44 24-67 2-49 (319)
332 TIGR02880 cbbX_cfxQ probable R 95.0 0.094 2E-06 51.5 8.1 24 44-67 59-82 (284)
333 PF01695 IstB_IS21: IstB-like 94.9 0.024 5.2E-07 51.6 3.6 32 44-75 48-82 (178)
334 PRK08533 flagellar accessory p 94.9 0.15 3.2E-06 48.5 9.0 47 44-91 25-74 (230)
335 COG0470 HolB ATPase involved i 94.9 0.2 4.2E-06 50.1 10.4 113 45-180 26-147 (325)
336 PRK14950 DNA polymerase III su 94.9 0.23 5.1E-06 54.0 11.6 36 33-68 27-63 (585)
337 PRK14954 DNA polymerase III su 94.9 0.25 5.3E-06 53.8 11.6 36 34-69 28-64 (620)
338 TIGR02237 recomb_radB DNA repa 94.9 0.16 3.5E-06 47.3 9.1 43 36-78 3-50 (209)
339 TIGR02397 dnaX_nterm DNA polym 94.9 0.31 6.7E-06 49.4 11.9 40 29-68 21-61 (355)
340 PRK09354 recA recombinase A; P 94.8 0.18 3.9E-06 50.7 9.7 53 30-82 44-102 (349)
341 TIGR01425 SRP54_euk signal rec 94.8 0.48 1E-05 49.1 12.8 116 45-185 102-228 (429)
342 COG1435 Tdk Thymidine kinase [ 94.8 0.28 6.2E-06 44.6 9.8 35 45-79 6-43 (201)
343 TIGR01242 26Sp45 26S proteasom 94.8 0.083 1.8E-06 54.0 7.4 33 43-75 156-188 (364)
344 TIGR00678 holB DNA polymerase 94.7 0.42 9.1E-06 43.7 11.3 35 34-68 4-39 (188)
345 PRK12724 flagellar biosynthesi 94.7 0.4 8.7E-06 49.3 11.9 109 45-185 225-348 (432)
346 TIGR03499 FlhF flagellar biosy 94.7 0.14 3.1E-06 50.2 8.5 32 44-75 195-231 (282)
347 cd01123 Rad51_DMC1_radA Rad51_ 94.7 0.2 4.2E-06 47.6 9.3 47 32-78 6-63 (235)
348 TIGR03878 thermo_KaiC_2 KaiC d 94.7 0.26 5.6E-06 47.8 10.2 34 44-77 37-73 (259)
349 COG1474 CDC6 Cdc6-related prot 94.6 0.2 4.3E-06 51.1 9.6 48 21-68 16-67 (366)
350 PF05127 Helicase_RecD: Helica 94.6 0.036 7.9E-07 50.0 3.8 117 47-183 1-125 (177)
351 PTZ00112 origin recognition co 94.6 0.47 1E-05 52.9 12.8 45 23-67 756-805 (1164)
352 TIGR01241 FtsH_fam ATP-depende 94.6 0.15 3.3E-06 54.4 9.2 34 42-75 87-120 (495)
353 PRK08903 DnaA regulatory inact 94.6 0.37 8.1E-06 45.5 11.0 47 29-75 27-77 (227)
354 COG1444 Predicted P-loop ATPas 94.6 0.48 1E-05 52.0 12.9 134 27-183 213-358 (758)
355 cd01393 recA_like RecA is a b 94.6 0.21 4.5E-06 47.2 9.2 49 32-80 6-65 (226)
356 PRK14971 DNA polymerase III su 94.6 0.43 9.3E-06 52.1 12.6 40 29-68 24-64 (614)
357 TIGR03346 chaperone_ClpB ATP-d 94.6 0.16 3.5E-06 57.8 9.8 38 30-67 178-218 (852)
358 PRK10865 protein disaggregatio 94.5 0.15 3.2E-06 58.0 9.3 38 30-67 183-223 (857)
359 PRK07471 DNA polymerase III su 94.5 0.26 5.6E-06 50.2 10.2 38 30-67 24-65 (365)
360 PRK07993 DNA polymerase III su 94.5 0.27 5.8E-06 49.5 10.2 43 25-67 2-48 (334)
361 PRK08699 DNA polymerase III su 94.5 0.4 8.7E-06 48.0 11.4 42 26-67 2-45 (325)
362 TIGR02238 recomb_DMC1 meiotic 94.5 0.23 4.9E-06 49.5 9.5 49 32-80 83-142 (313)
363 TIGR03345 VI_ClpV1 type VI sec 94.5 0.13 2.9E-06 58.2 8.8 91 45-169 598-692 (852)
364 COG1219 ClpX ATP-dependent pro 94.5 0.043 9.2E-07 53.4 4.0 32 44-75 98-129 (408)
365 TIGR03689 pup_AAA proteasome A 94.4 0.11 2.4E-06 55.0 7.5 29 42-70 215-243 (512)
366 PF06745 KaiC: KaiC; InterPro 94.4 0.082 1.8E-06 50.0 6.0 58 33-91 7-70 (226)
367 KOG2340 Uncharacterized conser 94.4 0.99 2.2E-05 47.0 13.8 93 266-360 550-652 (698)
368 COG2812 DnaX DNA polymerase II 94.4 0.1 2.3E-06 54.9 7.1 113 31-170 25-144 (515)
369 TIGR01243 CDC48 AAA family ATP 94.4 0.11 2.4E-06 58.2 7.8 34 43-76 487-520 (733)
370 KOG0733 Nuclear AAA ATPase (VC 94.3 0.19 4E-06 53.2 8.6 36 42-77 222-257 (802)
371 TIGR02639 ClpA ATP-dependent C 94.3 0.14 3.1E-06 57.3 8.4 92 45-169 486-577 (731)
372 CHL00176 ftsH cell division pr 94.2 0.25 5.3E-06 54.1 9.9 33 43-75 216-248 (638)
373 PRK11034 clpA ATP-dependent Cl 94.2 0.29 6.3E-06 54.6 10.4 29 38-66 202-230 (758)
374 TIGR00416 sms DNA repair prote 94.0 0.36 7.7E-06 50.8 10.3 99 31-158 80-183 (454)
375 PF03354 Terminase_1: Phage Te 94.0 0.24 5.1E-06 52.6 9.1 66 28-93 1-79 (477)
376 PF01745 IPT: Isopentenyl tran 94.0 0.057 1.2E-06 49.8 3.7 29 46-74 4-32 (233)
377 COG0464 SpoVK ATPases of the A 94.0 0.13 2.8E-06 54.9 7.1 47 43-90 276-322 (494)
378 PLN03187 meiotic recombination 94.0 0.36 7.7E-06 48.7 9.7 48 32-79 113-171 (344)
379 PF00308 Bac_DnaA: Bacterial d 93.9 0.89 1.9E-05 42.8 11.9 72 45-160 36-112 (219)
380 PRK14087 dnaA chromosomal repl 93.9 0.49 1.1E-05 49.7 11.1 44 44-88 142-190 (450)
381 PRK12422 chromosomal replicati 93.9 0.26 5.7E-06 51.6 8.9 33 44-76 142-177 (445)
382 TIGR01547 phage_term_2 phage t 93.9 0.42 9.1E-06 49.4 10.4 126 45-184 3-143 (396)
383 COG2255 RuvB Holliday junction 93.8 0.25 5.4E-06 47.5 7.7 28 43-70 52-79 (332)
384 PTZ00361 26 proteosome regulat 93.8 0.15 3.3E-06 53.0 6.9 35 42-76 216-250 (438)
385 PRK07399 DNA polymerase III su 93.8 0.75 1.6E-05 45.9 11.6 37 32-68 14-51 (314)
386 PRK06305 DNA polymerase III su 93.8 0.41 9E-06 50.3 10.2 39 30-68 22-64 (451)
387 TIGR01073 pcrA ATP-dependent D 93.7 0.2 4.4E-06 56.1 8.3 81 25-127 4-91 (726)
388 PRK08939 primosomal protein Dn 93.7 0.55 1.2E-05 46.7 10.3 32 44-75 157-191 (306)
389 PRK14086 dnaA chromosomal repl 93.6 0.42 9.1E-06 51.6 10.0 41 45-86 316-361 (617)
390 PRK06620 hypothetical protein; 93.5 0.35 7.6E-06 45.4 8.3 24 44-67 45-68 (214)
391 PRK08058 DNA polymerase III su 93.5 0.69 1.5E-05 46.5 11.0 35 33-67 17-52 (329)
392 CHL00195 ycf46 Ycf46; Provisio 93.5 0.15 3.3E-06 53.8 6.4 35 42-76 258-292 (489)
393 TIGR02655 circ_KaiC circadian 93.4 0.52 1.1E-05 50.1 10.4 63 28-91 246-313 (484)
394 PRK14970 DNA polymerase III su 93.4 0.9 2E-05 46.4 11.9 41 29-69 24-65 (367)
395 PRK14088 dnaA chromosomal repl 93.4 0.51 1.1E-05 49.5 10.1 32 44-75 131-167 (440)
396 PRK06731 flhF flagellar biosyn 93.3 1.3 2.8E-05 43.1 12.1 111 44-185 76-200 (270)
397 PRK09183 transposase/IS protei 93.3 0.084 1.8E-06 51.2 3.9 38 44-82 103-143 (259)
398 TIGR02640 gas_vesic_GvpN gas v 93.3 0.22 4.8E-06 48.3 6.8 49 27-77 4-55 (262)
399 PRK09361 radB DNA repair and r 93.3 0.56 1.2E-05 44.2 9.4 47 31-77 9-60 (225)
400 PRK12726 flagellar biosynthesi 93.3 1 2.2E-05 45.8 11.4 47 43-89 206-258 (407)
401 COG1223 Predicted ATPase (AAA+ 93.2 0.36 7.9E-06 45.8 7.5 37 42-78 150-186 (368)
402 PRK13833 conjugal transfer pro 93.1 0.17 3.8E-06 50.4 5.8 55 24-80 127-186 (323)
403 PRK00771 signal recognition pa 93.1 1.2 2.6E-05 46.5 12.1 33 43-75 95-130 (437)
404 PRK10416 signal recognition pa 93.1 1.6 3.5E-05 43.5 12.6 32 44-75 115-149 (318)
405 PRK04301 radA DNA repair and r 92.9 0.59 1.3E-05 46.7 9.4 48 32-79 89-147 (317)
406 PF08423 Rad51: Rad51; InterP 92.9 0.24 5.2E-06 47.9 6.4 59 32-90 25-94 (256)
407 PRK12727 flagellar biosynthesi 92.9 0.97 2.1E-05 47.9 11.1 32 44-75 351-387 (559)
408 PRK10867 signal recognition pa 92.8 0.73 1.6E-05 47.9 10.1 32 44-75 101-136 (433)
409 cd01125 repA Hexameric Replica 92.8 0.86 1.9E-05 43.5 10.0 32 45-76 3-49 (239)
410 COG4626 Phage terminase-like p 92.7 1.7 3.6E-05 45.9 12.4 64 21-84 57-134 (546)
411 PRK10865 protein disaggregatio 92.7 0.42 9.2E-06 54.4 8.8 93 45-169 600-694 (857)
412 CHL00095 clpC Clp protease ATP 92.7 0.27 5.9E-06 55.8 7.3 24 45-68 541-564 (821)
413 KOG1807 Helicases [Replication 92.7 0.2 4.4E-06 54.0 5.7 65 23-90 376-449 (1025)
414 TIGR02782 TrbB_P P-type conjug 92.6 0.24 5.1E-06 49.1 5.9 52 26-79 117-173 (299)
415 PHA03372 DNA packaging termina 92.5 0.83 1.8E-05 48.7 9.9 122 42-180 201-336 (668)
416 PF03237 Terminase_6: Terminas 92.5 1.9 4E-05 43.6 12.7 109 47-167 1-119 (384)
417 PRK05564 DNA polymerase III su 92.5 1.8 4E-05 43.1 12.3 41 28-68 10-51 (313)
418 CHL00206 ycf2 Ycf2; Provisiona 92.4 0.5 1.1E-05 56.7 8.9 43 41-84 1628-1670(2281)
419 COG1066 Sms Predicted ATP-depe 92.4 1.2 2.6E-05 45.2 10.5 102 30-160 78-183 (456)
420 COG3973 Superfamily I DNA and 92.4 0.29 6.2E-06 51.7 6.3 44 45-88 228-280 (747)
421 KOG0729 26S proteasome regulat 92.3 0.51 1.1E-05 44.9 7.3 43 42-85 210-252 (435)
422 PRK04132 replication factor C 92.3 0.71 1.5E-05 51.9 9.7 90 49-182 572-670 (846)
423 KOG0734 AAA+-type ATPase conta 92.3 0.84 1.8E-05 47.7 9.4 34 42-75 336-369 (752)
424 TIGR02236 recomb_radA DNA repa 92.2 0.92 2E-05 45.2 9.7 47 33-79 83-140 (310)
425 TIGR01243 CDC48 AAA family ATP 92.1 0.82 1.8E-05 51.4 10.2 33 43-75 212-244 (733)
426 PRK13894 conjugal transfer ATP 92.1 0.3 6.4E-06 48.8 5.9 54 25-80 132-190 (319)
427 KOG0740 AAA+-type ATPase [Post 92.1 0.34 7.5E-06 49.7 6.4 46 43-89 186-231 (428)
428 KOG0737 AAA+-type ATPase [Post 92.0 0.75 1.6E-05 45.9 8.4 48 43-91 127-174 (386)
429 TIGR03346 chaperone_ClpB ATP-d 91.9 0.51 1.1E-05 53.9 8.3 93 45-169 597-691 (852)
430 TIGR00064 ftsY signal recognit 91.9 2.9 6.3E-05 40.8 12.5 32 44-75 73-107 (272)
431 TIGR03345 VI_ClpV1 type VI sec 91.8 0.86 1.9E-05 51.8 9.9 38 30-67 192-232 (852)
432 PRK05800 cobU adenosylcobinami 91.8 0.32 6.9E-06 43.8 5.3 47 45-91 3-49 (170)
433 cd00544 CobU Adenosylcobinamid 91.8 0.4 8.6E-06 43.2 5.8 46 46-91 2-47 (169)
434 PF00931 NB-ARC: NB-ARC domain 91.6 1.2 2.6E-05 43.5 9.7 40 27-66 1-42 (287)
435 COG3598 RepA RecA-family ATPas 91.5 1.3 2.8E-05 43.5 9.3 113 30-157 78-206 (402)
436 COG2804 PulE Type II secretory 91.4 0.34 7.5E-06 50.4 5.7 43 26-69 242-284 (500)
437 KOG0745 Putative ATP-dependent 91.4 0.21 4.6E-06 50.7 4.0 30 45-74 228-257 (564)
438 PLN03186 DNA repair protein RA 91.4 1.1 2.3E-05 45.2 9.1 49 32-80 110-169 (342)
439 TIGR03880 KaiC_arch_3 KaiC dom 91.4 0.65 1.4E-05 43.8 7.2 58 33-91 4-66 (224)
440 PF06733 DEAD_2: DEAD_2; Inte 91.3 0.18 3.9E-06 45.6 3.2 42 111-160 117-160 (174)
441 TIGR02858 spore_III_AA stage I 91.3 0.96 2.1E-05 44.0 8.4 35 33-67 101-135 (270)
442 COG1702 PhoH Phosphate starvat 91.2 0.42 9.1E-06 47.3 5.8 142 26-186 129-284 (348)
443 TIGR00959 ffh signal recogniti 91.2 3.4 7.4E-05 43.0 12.8 32 44-75 100-135 (428)
444 KOG1133 Helicase of the DEAD s 91.2 0.36 7.7E-06 51.7 5.5 46 17-64 7-55 (821)
445 PRK09302 circadian clock prote 91.1 1 2.2E-05 48.3 9.2 61 30-91 258-323 (509)
446 cd01130 VirB11-like_ATPase Typ 91.1 0.68 1.5E-05 42.3 6.9 42 24-67 8-49 (186)
447 COG0467 RAD55 RecA-superfamily 91.0 0.61 1.3E-05 45.1 6.8 57 34-91 12-73 (260)
448 PF07728 AAA_5: AAA domain (dy 91.0 0.31 6.7E-06 42.1 4.2 34 45-78 1-34 (139)
449 TIGR00767 rho transcription te 91.0 0.8 1.7E-05 46.8 7.7 26 42-67 167-192 (415)
450 PTZ00035 Rad51 protein; Provis 90.8 1.2 2.7E-05 44.8 8.9 47 32-78 105-162 (337)
451 TIGR02655 circ_KaiC circadian 90.8 0.66 1.4E-05 49.3 7.3 60 31-91 7-72 (484)
452 KOG1051 Chaperone HSP104 and r 90.7 1.4 3E-05 49.5 9.9 106 28-168 565-683 (898)
453 PRK05986 cob(I)alamin adenolsy 90.7 0.69 1.5E-05 42.3 6.3 126 45-182 24-158 (191)
454 PRK06995 flhF flagellar biosyn 90.7 3.2 7E-05 43.8 12.1 23 45-67 258-280 (484)
455 PF00154 RecA: recA bacterial 90.7 1 2.2E-05 44.8 8.0 58 31-88 38-101 (322)
456 PF05707 Zot: Zonular occluden 90.5 0.65 1.4E-05 42.8 6.2 18 46-63 3-20 (193)
457 cd00561 CobA_CobO_BtuR ATP:cor 90.4 0.85 1.8E-05 40.5 6.5 126 45-182 4-138 (159)
458 PRK14723 flhF flagellar biosyn 90.3 2 4.4E-05 47.7 10.6 23 45-67 187-209 (767)
459 KOG0733 Nuclear AAA ATPase (VC 90.3 3.2 6.9E-05 44.4 11.3 44 43-87 545-588 (802)
460 TIGR03881 KaiC_arch_4 KaiC dom 90.2 0.98 2.1E-05 42.7 7.3 58 32-90 7-69 (229)
461 KOG2543 Origin recognition com 90.2 0.66 1.4E-05 46.5 6.1 71 20-92 4-77 (438)
462 PRK09519 recA DNA recombinatio 90.2 1.6 3.5E-05 48.6 9.7 52 31-82 45-102 (790)
463 PF13207 AAA_17: AAA domain; P 90.0 0.41 9E-06 40.0 4.1 26 46-71 2-27 (121)
464 cd01129 PulE-GspE PulE/GspE Th 89.8 0.58 1.3E-05 45.4 5.5 42 26-68 64-105 (264)
465 cd01394 radB RadB. The archaea 89.8 1.2 2.6E-05 41.8 7.5 46 32-77 6-56 (218)
466 PLN02165 adenylate isopentenyl 89.8 0.33 7.3E-06 48.3 3.7 31 39-69 39-69 (334)
467 cd03115 SRP The signal recogni 89.7 2.1 4.6E-05 38.4 8.8 30 46-75 3-35 (173)
468 PRK10733 hflB ATP-dependent me 89.6 0.88 1.9E-05 50.2 7.3 34 43-76 185-218 (644)
469 TIGR00708 cobA cob(I)alamin ad 89.6 4 8.7E-05 36.7 10.2 122 45-182 7-140 (173)
470 COG0324 MiaA tRNA delta(2)-iso 89.5 0.38 8.3E-06 47.3 3.9 28 45-72 5-32 (308)
471 PF00158 Sigma54_activat: Sigm 89.4 1.7 3.6E-05 39.1 7.7 93 44-170 23-118 (168)
472 PRK10917 ATP-dependent DNA hel 89.4 1.6 3.4E-05 48.6 9.1 75 266-341 308-392 (681)
473 TIGR00595 priA primosomal prot 89.3 2 4.4E-05 45.9 9.5 88 250-340 8-101 (505)
474 KOG0731 AAA+-type ATPase conta 89.3 0.35 7.6E-06 53.0 3.8 35 42-76 343-377 (774)
475 PF11496 HDA2-3: Class II hist 89.3 1.6 3.6E-05 43.0 8.1 130 247-390 92-250 (297)
476 PF04364 DNA_pol3_chi: DNA pol 89.3 6.1 0.00013 34.1 10.8 115 254-406 16-135 (137)
477 PRK05973 replicative DNA helic 89.2 0.92 2E-05 43.2 6.1 47 44-91 65-114 (237)
478 COG0593 DnaA ATPase involved i 89.1 1.5 3.3E-05 44.9 8.0 24 43-66 113-136 (408)
479 PRK09376 rho transcription ter 89.1 0.69 1.5E-05 47.1 5.4 27 41-67 167-193 (416)
480 PRK12608 transcription termina 88.8 1.2 2.6E-05 45.1 7.0 40 28-67 118-157 (380)
481 KOG0701 dsRNA-specific nucleas 88.8 0.28 6E-06 58.0 2.7 89 270-360 294-399 (1606)
482 COG0703 AroK Shikimate kinase 88.6 0.53 1.1E-05 42.2 3.8 28 44-71 3-30 (172)
483 PRK14721 flhF flagellar biosyn 88.6 4.2 9.1E-05 42.2 10.9 23 44-66 192-214 (420)
484 PRK10436 hypothetical protein; 88.5 0.78 1.7E-05 48.2 5.6 43 25-68 201-243 (462)
485 TIGR00602 rad24 checkpoint pro 88.4 4.4 9.5E-05 44.4 11.4 41 27-67 89-134 (637)
486 COG3267 ExeA Type II secretory 88.3 5.5 0.00012 38.0 10.5 39 44-82 52-92 (269)
487 TIGR02974 phageshock_pspF psp 88.2 3.5 7.6E-05 41.4 9.9 93 44-170 23-118 (329)
488 TIGR02688 conserved hypothetic 88.1 1.6 3.5E-05 44.9 7.4 21 44-64 210-230 (449)
489 PRK13851 type IV secretion sys 88.1 1 2.3E-05 45.4 6.0 45 34-80 155-201 (344)
490 PF07015 VirC1: VirC1 protein; 88.0 2.2 4.8E-05 40.2 7.7 38 51-89 10-52 (231)
491 TIGR02030 BchI-ChlI magnesium 88.0 2.4 5.1E-05 42.7 8.5 38 30-67 9-49 (337)
492 PRK05580 primosome assembly pr 87.9 3.5 7.5E-05 45.9 10.5 89 250-341 173-267 (679)
493 PRK14873 primosome assembly pr 87.9 3.2 6.8E-05 45.8 10.0 92 249-343 170-268 (665)
494 PRK05917 DNA polymerase III su 87.9 6.2 0.00013 38.7 11.0 37 32-68 7-44 (290)
495 PF06309 Torsin: Torsin; Inte 87.8 1.7 3.7E-05 36.8 6.1 49 44-92 52-113 (127)
496 PF00437 T2SE: Type II/IV secr 87.5 1 2.2E-05 43.8 5.5 36 44-79 128-166 (270)
497 PHA02774 E1; Provisional 87.5 4.8 0.0001 43.2 10.6 46 32-77 422-468 (613)
498 TIGR00150 HI0065_YjeE ATPase, 87.3 0.61 1.3E-05 40.1 3.2 39 45-83 24-62 (133)
499 PRK04841 transcriptional regul 87.2 7.6 0.00016 44.7 13.3 50 23-76 15-64 (903)
500 TIGR02239 recomb_RAD51 DNA rep 87.1 2.7 5.9E-05 41.9 8.3 47 32-78 83-140 (316)
No 1
>KOG1123 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 3'-5' helicase subunit SSL2 [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=1.1e-123 Score=907.44 Aligned_cols=477 Identities=73% Similarity=1.166 Sum_probs=465.5
Q ss_pred CccccccccCCCCCCCccCCCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhh
Q 010367 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (512)
Q Consensus 1 ~l~~yd~~~~~~~~~~~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L 80 (512)
||+||||+||+.||+++|+|||..++||||++++++||+|+++|+|||++|||+|||+++++++++++++|||+|.+.+.
T Consensus 278 lLeEYDFRND~~npdl~idLKPst~iRpYQEksL~KMFGNgRARSGiIVLPCGAGKtLVGvTAa~tikK~clvLcts~VS 357 (776)
T KOG1123|consen 278 LLEEYDFRNDNVNPDLDIDLKPSTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKTLVGVTAACTIKKSCLVLCTSAVS 357 (776)
T ss_pred hhhhhccccCCCCCCCCcCcCcccccCchHHHHHHHHhCCCcccCceEEEecCCCCceeeeeeeeeecccEEEEecCccC
Confidence 68999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 81 ~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
++||..+|..|+++.+..|++|+++.++.+..+++|+|+||.|+.+..+|+++++++++++..++||++|+||+|.+++.
T Consensus 358 VeQWkqQfk~wsti~d~~i~rFTsd~Ke~~~~~~gvvvsTYsMva~t~kRS~eaek~m~~l~~~EWGllllDEVHvvPA~ 437 (776)
T KOG1123|consen 358 VEQWKQQFKQWSTIQDDQICRFTSDAKERFPSGAGVVVTTYSMVAYTGKRSHEAEKIMDFLRGREWGLLLLDEVHVVPAK 437 (776)
T ss_pred HHHHHHHHHhhcccCccceEEeeccccccCCCCCcEEEEeeehhhhcccccHHHHHHHHHHhcCeeeeEEeehhccchHH
Confidence 99999999999999999999999999998899999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH
Q 010367 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (512)
Q Consensus 161 ~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (512)
+|++++..+.+|++||||||.+|+|+++.+|++++||++|+++|+++.+.|+|++++|.++||||+++||++|+ +...+
T Consensus 438 MFRRVlsiv~aHcKLGLTATLvREDdKI~DLNFLIGPKlYEAnWmdL~~kGhIA~VqCaEVWCpMt~eFy~eYL-~~~t~ 516 (776)
T KOG1123|consen 438 MFRRVLSIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMDLQKKGHIAKVQCAEVWCPMTPEFYREYL-RENTR 516 (776)
T ss_pred HHHHHHHHHHHHhhccceeEEeeccccccccceeecchhhhccHHHHHhCCceeEEeeeeeecCCCHHHHHHHH-hhhhh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 79999
Q ss_pred HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCCCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
++.++++|||+||++|++|+++|+ .+|+|+|||++++..+..+|-+|+.++|+|.+++.||++|+++|+.++.+++||.
T Consensus 517 kr~lLyvMNP~KFraCqfLI~~HE-~RgDKiIVFsDnvfALk~YAikl~KpfIYG~Tsq~ERm~ILqnFq~n~~vNTIFl 595 (776)
T KOG1123|consen 517 KRMLLYVMNPNKFRACQFLIKFHE-RRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQNERMKILQNFQTNPKVNTIFL 595 (776)
T ss_pred hhheeeecCcchhHHHHHHHHHHH-hcCCeEEEEeccHHHHHHHHHHcCCceEECCCchhHHHHHHHhcccCCccceEEE
Confidence 999999999999999999999999 8999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHH
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (512)
+++|+++||+|+|+|+|++++|.||+++.+||+||++|++++++ +++++|||+||++||.||+|+.+||+||+
T Consensus 596 SKVgDtSiDLPEAnvLIQISSH~GSRRQEAQRLGRILRAKk~~d-------e~fnafFYSLVS~DTqEM~YStKRQ~FLi 668 (776)
T KOG1123|consen 596 SKVGDTSIDLPEANVLIQISSHGGSRRQEAQRLGRILRAKKRND-------EEFNAFFYSLVSKDTQEMYYSTKRQQFLI 668 (776)
T ss_pred eeccCccccCCcccEEEEEcccccchHHHHHHHHHHHHHhhcCc-------cccceeeeeeeecchHHHHhhhhhhhhhh
Confidence 99999999999999999999999999999999999999999998 99999999999999999999999999999
Q ss_pred hcCCceEEeeCCCCCCCCCCCcCCCHHHHHHHHHHHHhcCCccccccccCCchhhhhhhhhhhcccccccccCCCCceee
Q 010367 401 DQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIALHKARRIAGSMSAMSGAQGMVYM 480 (512)
Q Consensus 401 ~~g~~~~~i~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 480 (512)
+|||+|+||+++++|++.+++.|.+++||++||+.||.++|.+.++|..++++ ...+++.|+.|+|++||||++|+||
T Consensus 669 dQGYsfkVit~L~gme~~~~l~y~skeeq~~LLq~Vl~a~d~~~e~E~~~~~~--~~~~~a~r~~gslssmsGgd~m~Y~ 746 (776)
T KOG1123|consen 669 DQGYSFKVITNLPGMENLEDLAYASKEEQLELLQKVLLASDLDAELEDLEDES--RASSKAVRSEGSLSSMSGGDDMAYM 746 (776)
T ss_pred hcCceEEEeecCCCcCcCcccccCCHHHHHHHHHHHHhcchhhhccccccccc--cccccceecccccccccCCCcceee
Confidence 99999999999999999999999999999999999999999999888775542 3356788999999999999999999
Q ss_pred eeecCccc
Q 010367 481 EYSTGQKK 488 (512)
Q Consensus 481 ~~~~~~~~ 488 (512)
||+.+++|
T Consensus 747 ey~~~~~k 754 (776)
T KOG1123|consen 747 EYNSSRNK 754 (776)
T ss_pred eecccccc
Confidence 99999993
No 2
>TIGR00603 rad25 DNA repair helicase rad25. All proteins in this family for which functions are known are DNA-DNA helicases used for the initiation of nucleotide excision repair and transacription as part of the TFIIH complex.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=1.5e-96 Score=780.73 Aligned_cols=491 Identities=72% Similarity=1.135 Sum_probs=451.1
Q ss_pred CccccccccCCCCCCCccCCCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhh
Q 010367 1 MLEEYDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (512)
Q Consensus 1 ~l~~yd~~~~~~~~~~~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L 80 (512)
+|+||||++|..+|++++++++.++|||||++|+.+|+.++++++|+|++|||+|||++++.+++.+++++|||||+.+|
T Consensus 231 ~~~~~~f~~~~~~~~~~i~L~~~~~LRpYQ~eAl~~~~~~gr~r~GIIvLPtGaGKTlvai~aa~~l~k~tLILvps~~L 310 (732)
T TIGR00603 231 LLEEYDFRNDTVNPDLNIDLKPTTQIRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVTAACTVKKSCLVLCTSAVS 310 (732)
T ss_pred hhhhhhhcccccCCCCCcccccCCCcCHHHHHHHHHHHhcCCCCCcEEEeCCCCChHHHHHHHHHHhCCCEEEEeCcHHH
Confidence 36899999999999999999999999999999999999887777999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 81 VDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 81 ~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
+.||.++|.+|+++++..|..++|+.++......+|+|+||+++.+..+|.......++.+....|++||+||||+++++
T Consensus 311 v~QW~~ef~~~~~l~~~~I~~~tg~~k~~~~~~~~VvVtTYq~l~~~~~r~~~~~~~l~~l~~~~~gLII~DEvH~lpA~ 390 (732)
T TIGR00603 311 VEQWKQQFKMWSTIDDSQICRFTSDAKERFHGEAGVVVSTYSMVAHTGKRSYESEKVMEWLTNREWGLILLDEVHVVPAA 390 (732)
T ss_pred HHHHHHHHHHhcCCCCceEEEEecCcccccccCCcEEEEEHHHhhcccccchhhhHHHHHhccccCCEEEEEccccccHH
Confidence 99999999999988888999999987766555688999999999987777766777888887789999999999999999
Q ss_pred HHHHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH
Q 010367 161 MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (512)
Q Consensus 161 ~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (512)
.|++++..++++++|||||||.|+|+.+.++++++||++|+.+|.++++.|+|+++.|.++||+|+++++.+|+ .....
T Consensus 391 ~fr~il~~l~a~~RLGLTATP~ReD~~~~~L~~LiGP~vye~~~~eLi~~G~LA~~~~~ev~v~~t~~~~~~yl-~~~~~ 469 (732)
T TIGR00603 391 MFRRVLTIVQAHCKLGLTATLVREDDKITDLNFLIGPKLYEANWMELQKKGFIANVQCAEVWCPMTPEFYREYL-RENSR 469 (732)
T ss_pred HHHHHHHhcCcCcEEEEeecCcccCCchhhhhhhcCCeeeecCHHHHHhCCccccceEEEEEecCCHHHHHHHH-Hhcch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999 55566
Q ss_pred HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCCCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
.+..++.+||+|+.+|..|+++|+ .+++++||||+++.+++.++..|+++++||++++.+|.+++++|+.++.+++||+
T Consensus 470 ~k~~l~~~np~K~~~~~~Li~~he-~~g~kiLVF~~~~~~l~~~a~~L~~~~I~G~ts~~ER~~il~~Fr~~~~i~vLv~ 548 (732)
T TIGR00603 470 KRMLLYVMNPNKFRACQFLIRFHE-QRGDKIIVFSDNVFALKEYAIKLGKPFIYGPTSQQERMQILQNFQHNPKVNTIFL 548 (732)
T ss_pred hhhHHhhhChHHHHHHHHHHHHHh-hcCCeEEEEeCCHHHHHHHHHHcCCceEECCCCHHHHHHHHHHHHhCCCccEEEE
Confidence 677888999999999999999998 7899999999999999999999999999999999999999999997668899999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCC-ceeEEEEEEEeCCcHhhHHHHHHHHHH
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKE-EYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~-~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (512)
|+++++|||+|++++||+++++++|+.+|+||+||++|.++++. . +++++||+||++||.|++++.+||+||
T Consensus 549 SkVgdeGIDlP~a~vvI~~s~~~gS~~q~iQRlGRilR~~~~~~-------~~~~~A~fY~lVs~dT~E~~~s~~Rq~fl 621 (732)
T TIGR00603 549 SKVGDTSIDLPEANVLIQISSHYGSRRQEAQRLGRILRAKKGSD-------AEEYNAFFYSLVSKDTQEMYYSTKRQRFL 621 (732)
T ss_pred ecccccccCCCCCCEEEEeCCCCCCHHHHHHHhcccccCCCCCc-------cccccceEEEEecCCchHHHHHHHHHHHH
Confidence 99999999999999999998888899999999999999997654 3 678999999999999999999999999
Q ss_pred HhcCCceEEeeCCCCCCCCCCCcCCCHHHHHHHHHHHHhcCCccccccccCCchhhhh----------hhhhhhcccccc
Q 010367 400 IDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLEQLDEDADDIA----------LHKARRIAGSMS 469 (512)
Q Consensus 400 ~~~g~~~~~i~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~ 469 (512)
.+|||+|++|++++++.+.+++.|.++++|.+||+.+|.+++.++++|..++|.+.+. ...+.|++|+|+
T Consensus 622 ~~qGY~~~vi~~~~~~~~~~~l~~~~~~~~~~ll~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 701 (732)
T TIGR00603 622 VDQGYSFKVITHLPGMDNESNLAYSSKEEQLELLQKVLLAGDLDAELEVLEGEFGSRALGASRSMSSASGKAVRRGGSLS 701 (732)
T ss_pred HHCCCeeEEEecCcccccccccccCCHHHHHHHHHHHHhCcccccchhccccchhccccccccccccccccceeccccHh
Confidence 9999999999999999988899999999999999999999988887666554422332 234789999999
Q ss_pred cccCCCCceeeeeecCccccCCCCCCCCCCCCccCccccc
Q 010367 470 AMSGAQGMVYMEYSTGQKKLGLGQKGKPKDPSKRHYLFKR 509 (512)
Q Consensus 470 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 509 (512)
+||||++|+|+||+++++ +.++ +.+||||||
T Consensus 702 ~~~g~~~~~~~~~~~~~~-------~~~~--~~~~~~~~~ 732 (732)
T TIGR00603 702 SLSGGDDMAYMEYRKPAI-------KKSK--KEVHPLFKK 732 (732)
T ss_pred hhcCCCCceeEEeecccc-------cccc--cccCcccCC
Confidence 999999999999999988 4443 236999986
No 3
>COG1061 SSL2 DNA or RNA helicases of superfamily II [Transcription / DNA replication, recombination, and repair]
Probab=100.00 E-value=3.1e-53 Score=439.08 Aligned_cols=382 Identities=36% Similarity=0.538 Sum_probs=325.1
Q ss_pred cccccCCCCCCCccCCCCCCCCcHHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHH
Q 010367 5 YDFRNDNVNPDLNMELKPHAQPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83 (512)
Q Consensus 5 yd~~~~~~~~~~~~~l~~~~~Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Q 83 (512)
+++..+...+.... ....++|||||++|++.|+.+.+ .+++++++|||+|||++++.+++.++.++|||||+.+|+.|
T Consensus 17 ~~~~~~~~~~~~~~-~~~~~~lr~yQ~~al~a~~~~~~~~~~gvivlpTGaGKT~va~~~~~~~~~~~Lvlv~~~~L~~Q 95 (442)
T COG1061 17 ADYVLDEGLPLKLI-VAFEFELRPYQEEALDALVKNRRTERRGVIVLPTGAGKTVVAAEAIAELKRSTLVLVPTKELLDQ 95 (442)
T ss_pred HHHhhhcCCccccc-cccCCCCcHHHHHHHHHHHhhcccCCceEEEeCCCCCHHHHHHHHHHHhcCCEEEEECcHHHHHH
Confidence 34444443444332 56778999999999999988522 35999999999999999999999999999999999999999
Q ss_pred HHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH
Q 010367 84 WAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163 (512)
Q Consensus 84 w~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~ 163 (512)
|.+.+.++++.+ ..++.++++.++.. . ..|.|+|++++.... .+..+..+.|++||+|||||++++.++
T Consensus 96 w~~~~~~~~~~~-~~~g~~~~~~~~~~-~-~~i~vat~qtl~~~~--------~l~~~~~~~~~liI~DE~Hh~~a~~~~ 164 (442)
T COG1061 96 WAEALKKFLLLN-DEIGIYGGGEKELE-P-AKVTVATVQTLARRQ--------LLDEFLGNEFGLIIFDEVHHLPAPSYR 164 (442)
T ss_pred HHHHHHHhcCCc-cccceecCceeccC-C-CcEEEEEhHHHhhhh--------hhhhhcccccCEEEEEccccCCcHHHH
Confidence 999999986554 46788888877532 2 579999999997631 345555568999999999999999999
Q ss_pred HHHHhcccce-EEEEcccCCCCc-chHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHH
Q 010367 164 KVISLTKSHC-KLGLTATLVRED-ERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (512)
Q Consensus 164 ~~l~~~~~~~-~l~LTATp~~~~-~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (512)
.+...+.+.+ +|||||||.|.| +.+..+..++||++|+.++.++++.|+++++.+..+++.++.+....|. ....+.
T Consensus 165 ~~~~~~~~~~~~LGLTATp~R~D~~~~~~l~~~~g~~vy~~~~~~li~~g~Lap~~~~~i~~~~t~~~~~~~~-~~~~~~ 243 (442)
T COG1061 165 RILELLSAAYPRLGLTATPEREDGGRIGDLFDLIGPIVYEVSLKELIDEGYLAPYKYVEIKVTLTEDEEREYA-KESARF 243 (442)
T ss_pred HHHHhhhcccceeeeccCceeecCCchhHHHHhcCCeEeecCHHHHHhCCCccceEEEEEEeccchHHHHHhh-hhhhhh
Confidence 9999999988 999999999999 7888999999999999999999999999999999999998888777666 222222
Q ss_pred ---------------HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCCC----ceeCCCCHHHH
Q 010367 242 ---------------KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKP----MIYGATSHVER 302 (512)
Q Consensus 242 ---------------~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~~----~i~g~~~~~eR 302 (512)
...+...++.+...+..++..+. ++.+++||+.++.+++.++..+..+ .++|+++..+|
T Consensus 244 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~lif~~~~~~a~~i~~~~~~~~~~~~it~~t~~~eR 321 (442)
T COG1061 244 RELLRARGTLRAENEARRIAIASERKIAAVRGLLLKHA--RGDKTLIFASDVEHAYEIAKLFLAPGIVEAITGETPKEER 321 (442)
T ss_pred hhhhhhhhhhhHHHHHHHHhhccHHHHHHHHHHHHHhc--CCCcEEEEeccHHHHHHHHHHhcCCCceEEEECCCCHHHH
Confidence 24556667778888888888774 5889999999999999999999888 99999999999
Q ss_pred HHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEE
Q 010367 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382 (512)
Q Consensus 303 ~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv 382 (512)
.+++++|+.+ .+++||+++++++|+|+|+++++|+.++ .+|+..|+||+||++|..+++ ....+++|.++
T Consensus 322 ~~il~~fr~g-~~~~lv~~~vl~EGvDiP~~~~~i~~~~-t~S~~~~~Q~lGR~LR~~~~k--------~~~~~~~~~~~ 391 (442)
T COG1061 322 EAILERFRTG-GIKVLVTVKVLDEGVDIPDADVLIILRP-TGSRRLFIQRLGRGLRPAEGK--------EDTLALDYSLV 391 (442)
T ss_pred HHHHHHHHcC-CCCEEEEeeeccceecCCCCcEEEEeCC-CCcHHHHHHHhhhhccCCCCC--------CceEEEEEEee
Confidence 9999999998 6999999999999999999999999966 679999999999999976443 34469999999
Q ss_pred eCCcHhhHHHHHHHHHHHhcCCceEEeeC
Q 010367 383 STDTQEMFYSTKRQQFLIDQGYSFKVITS 411 (512)
Q Consensus 383 ~~~t~e~~~~~~r~~~l~~~g~~~~~i~~ 411 (512)
..++.++..+..+..++..+|+.......
T Consensus 392 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~ 420 (442)
T COG1061 392 PDDLGEEDIARRRRLFLIRKGYTYRLLTA 420 (442)
T ss_pred cCcccccchhhhhhhhHHhccchhhhhhc
Confidence 99999999999999888888887655544
No 4
>KOG0385 consensus Chromatin remodeling complex WSTF-ISWI, small subunit [Transcription]
Probab=100.00 E-value=7.6e-47 Score=385.91 Aligned_cols=347 Identities=22% Similarity=0.338 Sum_probs=275.0
Q ss_pred CCCCcHHHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 23 HAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
..+|||||.++++|+. .++ -+||++++||+|||+++|+++..+ .+|.||+||.++ ..+|..+|++|
T Consensus 165 ~g~lr~YQveGlnWLi~l~eng--ingILaDEMGLGKTlQtIs~l~yl~~~~~~~GPfLVi~P~St-L~NW~~Ef~rf-- 239 (971)
T KOG0385|consen 165 GGELRDYQLEGLNWLISLYENG--INGILADEMGLGKTLQTISLLGYLKGRKGIPGPFLVIAPKST-LDNWMNEFKRF-- 239 (971)
T ss_pred CCccchhhhccHHHHHHHHhcC--cccEeehhcccchHHHHHHHHHHHHHhcCCCCCeEEEeeHhh-HHHHHHHHHHh--
Confidence 3789999999999874 444 489999999999999999888654 479999999998 78999999999
Q ss_pred CCCCcEEEEcCCcccc--------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHH
Q 010367 94 IQDDQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFR 163 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~ 163 (512)
.|...+.+|.|+...+ ..+..+|+||||++..+. ...|....|.++||||||++++. ...
T Consensus 240 ~P~l~~~~~~Gdk~eR~~~~r~~~~~~~fdV~iTsYEi~i~d----------k~~lk~~~W~ylvIDEaHRiKN~~s~L~ 309 (971)
T KOG0385|consen 240 TPSLNVVVYHGDKEERAALRRDIMLPGRFDVCITSYEIAIKD----------KSFLKKFNWRYLVIDEAHRIKNEKSKLS 309 (971)
T ss_pred CCCcceEEEeCCHHHHHHHHHHhhccCCCceEeehHHHHHhh----------HHHHhcCCceEEEechhhhhcchhhHHH
Confidence 4677899999986543 246899999999999764 45666789999999999999987 567
Q ss_pred HHHHhcccceEEEEcccCCCCcch--HhhhHhhhCCceeee----------------------------------cHHHH
Q 010367 164 KVISLTKSHCKLGLTATLVREDER--ITDLNFLIGPKLYEA----------------------------------NWLDL 207 (512)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~--~~~l~~l~gp~~~~~----------------------------------~~~~l 207 (512)
+++..+....+|++||||.+++-. |..|++++ |.++.. ...++
T Consensus 310 ~~lr~f~~~nrLLlTGTPLQNNL~ELWaLLnFll-PdiF~~~e~F~swF~~~~~~~~~e~v~~Lh~vL~pFlLRR~K~dV 388 (971)
T KOG0385|consen 310 KILREFKTDNRLLLTGTPLQNNLHELWALLNFLL-PDIFNSAEDFDSWFDFTNCEGDQELVSRLHKVLRPFLLRRIKSDV 388 (971)
T ss_pred HHHHHhcccceeEeeCCcccccHHHHHHHHHhhc-hhhccCHHHHHHHHcccccccCHHHHHHHHhhhhHHHHHHHHHhH
Confidence 889999999999999999998744 44444443 322211 11111
Q ss_pred HhCCCcccceeEEEEcCCCHH---HHHHHHHhhch--------HHHHHH------------------------------h
Q 010367 208 VKGGFIANVQCAEVWCPMTKE---FFSEYLKKENS--------KKKQAL------------------------------Y 246 (512)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~~~~---~~~~~l~~~~~--------~~~~~~------------------------------~ 246 (512)
. ..+.|.....++++|+.- +|...+..+.. .+.++. .
T Consensus 389 e--~sLppKkE~~iyvgms~mQkk~Y~~iL~kdl~~~n~~~~~~k~kL~NI~mQLRKccnHPYLF~g~ePg~pyttdehL 466 (971)
T KOG0385|consen 389 E--KSLPPKKELIIYVGMSSMQKKWYKAILMKDLDALNGEGKGEKTKLQNIMMQLRKCCNHPYLFDGAEPGPPYTTDEHL 466 (971)
T ss_pred h--hcCCCcceeeEeccchHHHHHHHHHHHHhcchhhcccccchhhHHHHHHHHHHHhcCCccccCCCCCCCCCCcchHH
Confidence 1 135566777888888754 44444422211 011111 1
Q ss_pred hcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCC--CccEEE
Q 010367 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR--DLNTIF 319 (512)
Q Consensus 247 ~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~--~~~vlv 319 (512)
+.+++|+.+++.|+..+. ..|++||||++....++.+..++. ...++|+++.++|...++.|+..+ ..-+++
T Consensus 467 v~nSGKm~vLDkLL~~Lk-~~GhRVLIFSQmt~mLDILeDyc~~R~y~ycRiDGSt~~eeR~~aI~~fn~~~s~~FiFlL 545 (971)
T KOG0385|consen 467 VTNSGKMLVLDKLLPKLK-EQGHRVLIFSQMTRMLDILEDYCMLRGYEYCRLDGSTSHEEREDAIEAFNAPPSEKFIFLL 545 (971)
T ss_pred HhcCcceehHHHHHHHHH-hCCCeEEEeHHHHHHHHHHHHHHHhcCceeEeecCCCCcHHHHHHHHhcCCCCcceEEEEE
Confidence 236789999999999888 899999999999999999999872 346999999999999999999974 233455
Q ss_pred EeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHH
Q 010367 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (512)
Q Consensus 320 ~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (512)
+|.+||.||||..|++||+|++.| ||+...|++.|+||+| |.++|.+|+|++.+|+|+.+..+...+|
T Consensus 546 STRAGGLGINL~aADtVIlyDSDW-NPQ~DLQAmDRaHRIG-----------Q~K~V~V~RLitentVEe~IveRA~~KL 613 (971)
T KOG0385|consen 546 STRAGGLGINLTAADTVILYDSDW-NPQVDLQAMDRAHRIG-----------QKKPVVVYRLITENTVEEKIVERAAAKL 613 (971)
T ss_pred eccccccccccccccEEEEecCCC-CchhhhHHHHHHHhhC-----------CcCceEEEEEeccchHHHHHHHHHHHHh
Confidence 699999999999999999999998 9999999999999999 6678999999999999998888777666
Q ss_pred H
Q 010367 400 I 400 (512)
Q Consensus 400 ~ 400 (512)
.
T Consensus 614 ~ 614 (971)
T KOG0385|consen 614 R 614 (971)
T ss_pred c
Confidence 3
No 5
>KOG0384 consensus Chromodomain-helicase DNA-binding protein [Transcription]
Probab=100.00 E-value=7.1e-47 Score=402.76 Aligned_cols=416 Identities=17% Similarity=0.241 Sum_probs=307.2
Q ss_pred CCCCCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 22 PHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
...+||+||.++++||+.. ....+||++++||+|||++.++++..+ .+|+|||||.+. +..|.++|..|+.+
T Consensus 367 ~g~~LRdyQLeGlNWl~~~W~~~~n~ILADEmgLgktvqti~fl~~l~~~~~~~gpflvvvplst-~~~W~~ef~~w~~m 445 (1373)
T KOG0384|consen 367 GGNELRDYQLEGLNWLLYSWYKRNNCILADEMGLGKTVQTITFLSYLFHSLQIHGPFLVVVPLST-ITAWEREFETWTDM 445 (1373)
T ss_pred ccchhhhhhcccchhHHHHHHhcccceehhhcCCCcchHHHHHHHHHHHhhhccCCeEEEeehhh-hHHHHHHHHHHhhh
Confidence 3478999999999987532 112399999999999999998888543 589999999997 88999999999754
Q ss_pred CCCcEEEEcCCcccc---------ccC-----CCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 95 QDDQICRFTSDSKER---------FRG-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~---------~~~-----~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
++.+|+|....+ ... ..++++|||+++.+. ..+|...+|.++++||||++++.
T Consensus 446 ---n~i~y~g~~~sr~~i~~ye~~~~~~~~~lkf~~lltTye~~LkD----------k~~L~~i~w~~~~vDeahrLkN~ 512 (1373)
T KOG0384|consen 446 ---NVIVYHGNLESRQLIRQYEFYHSSNTKKLKFNALLTTYEIVLKD----------KAELSKIPWRYLLVDEAHRLKND 512 (1373)
T ss_pred ---ceeeeecchhHHHHHHHHHheecCCccccccceeehhhHHHhcc----------HhhhccCCcceeeecHHhhcCch
Confidence 678888864422 112 588999999999876 56777889999999999999976
Q ss_pred --HHHHHHHhcccceEEEEcccCCCCcchHh-hhHhhhCCcee------------------------------eecHHHH
Q 010367 161 --MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKLY------------------------------EANWLDL 207 (512)
Q Consensus 161 --~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~l~gp~~~------------------------------~~~~~~l 207 (512)
..-..+..++..++|++||||.+|.-.+. .|..++-|.-+ +.-..+.
T Consensus 513 ~~~l~~~l~~f~~~~rllitgTPlQNsikEL~sLl~Fl~P~kf~~~~~f~~~~~~~~e~~~~~L~~~L~P~~lRr~kkdv 592 (1373)
T KOG0384|consen 513 ESKLYESLNQFKMNHRLLITGTPLQNSLKELWSLLHFLMPGKFDSWDEFLEEFDEETEEQVRKLQQILKPFLLRRLKKDV 592 (1373)
T ss_pred HHHHHHHHHHhcccceeeecCCCccccHHHHHHHhcccCCCCCCcHHHHHHhhcchhHHHHHHHHHHhhHHHHHHHHhhh
Confidence 33345777888899999999999764432 22233333222 1111111
Q ss_pred HhCCCcccceeEEEEcCCC---HHHHHHHHHhhch-----------------------------------------H---
Q 010367 208 VKGGFIANVQCAEVWCPMT---KEFFSEYLKKENS-----------------------------------------K--- 240 (512)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~-----------------------------------------~--- 240 (512)
- .-+++..-..+.+.|+ ..+|+..|.++.. +
T Consensus 593 e--kslp~k~E~IlrVels~lQk~yYk~ILtkN~~~LtKG~~g~~~~lLNimmELkKccNHpyLi~gaee~~~~~~~~~~ 670 (1373)
T KOG0384|consen 593 E--KSLPPKEETILRVELSDLQKQYYKAILTKNFSALTKGAKGSTPSLLNIMMELKKCCNHPYLIKGAEEKILGDFRDKM 670 (1373)
T ss_pred c--cCCCCCcceEEEeehhHHHHHHHHHHHHhhHHHHhccCCCCCchHHHHHHHHHHhcCCccccCcHHHHHHHhhhhcc
Confidence 1 2333444445555554 3445544422110 0
Q ss_pred --HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---CCC--ceeCCCCHHHHHHHHHHhhCC-
Q 010367 241 --KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---RKP--MIYGATSHVERTKILQAFKCS- 312 (512)
Q Consensus 241 --~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~~~--~i~g~~~~~eR~~il~~F~~~- 312 (512)
..-...+++++|+.+++.||..+. ..|++||||++.+.+++.|+++| +.+ .++|.++.+-|+..|+.|+..
T Consensus 671 ~d~~L~~lI~sSGKlVLLDKLL~rLk-~~GHrVLIFSQMVRmLDIL~eYL~~r~ypfQRLDGsvrgelRq~AIDhFnap~ 749 (1373)
T KOG0384|consen 671 RDEALQALIQSSGKLVLLDKLLPRLK-EGGHRVLIFSQMVRMLDILAEYLSLRGYPFQRLDGSVRGELRQQAIDHFNAPD 749 (1373)
T ss_pred hHHHHHHHHHhcCcEEeHHHHHHHHh-cCCceEEEhHHHHHHHHHHHHHHHHcCCcceeccCCcchHHHHHHHHhccCCC
Confidence 001123456788888999998888 89999999999999999999999 333 599999999999999999987
Q ss_pred -CCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHH
Q 010367 313 -RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (512)
Q Consensus 313 -~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (512)
+.+-+|++|.|||.||||..|++||+||+.| ||+..+|++.||||+| |.+.|.||+||+++|+|+.+
T Consensus 750 SddFvFLLSTRAGGLGINLatADTVIIFDSDW-NPQNDLQAqARaHRIG-----------Qkk~VnVYRLVTk~TvEeEi 817 (1373)
T KOG0384|consen 750 SDDFVFLLSTRAGGLGINLATADTVIIFDSDW-NPQNDLQAQARAHRIG-----------QKKHVNVYRLVTKNTVEEEI 817 (1373)
T ss_pred CCceEEEEecccCcccccccccceEEEeCCCC-CcchHHHHHHHHHhhc-----------ccceEEEEEEecCCchHHHH
Confidence 4555777899999999999999999999998 9999999999999999 56679999999999999999
Q ss_pred HHHHHHHHHhcCCceEEeeCCCCCCCCCCCcCCCHHHHHHHHHHHHhcCCcccccc---ccCCchhhhhhhhhhhccccc
Q 010367 392 STKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVGLE---QLDEDADDIALHKARRIAGSM 468 (512)
Q Consensus 392 ~~~r~~~l~~~g~~~~~i~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~ 468 (512)
..+..++| +..+.||+.+..-....+-.-.+++|-.++|..-...--.+.+.| ..+.|.|+| +.|++..+
T Consensus 818 lERAk~Km---vLD~aVIQ~m~t~~~~s~~~~f~K~ELsaILKfGA~~lfke~ene~s~~~e~DIDeI----L~rae~~~ 890 (1373)
T KOG0384|consen 818 LERAKLKM---VLDHAVIQRMDTKGKTSKSNPFSKEELSAILKFGAYELFKEEENEESKFCEMDIDEI----LERAETRI 890 (1373)
T ss_pred HHHHHHHh---hhHHHHHHhhccccccCCCCCCCHHHHHHHHHhchHHhhhccccccccccccCHHHH----Hhhccccc
Confidence 98877776 456778888765222333344456777788887655543333322 235677777 77777777
Q ss_pred ccccC
Q 010367 469 SAMSG 473 (512)
Q Consensus 469 ~~~~~ 473 (512)
+.-++
T Consensus 891 t~~~~ 895 (1373)
T KOG0384|consen 891 TEESD 895 (1373)
T ss_pred ccccc
Confidence 66664
No 6
>PHA02558 uvsW UvsW helicase; Provisional
Probab=100.00 E-value=4.6e-45 Score=385.43 Aligned_cols=357 Identities=17% Similarity=0.210 Sum_probs=275.1
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cC-CCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IK-KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~-~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
..+|||||.+|+..++.+. ++++++|||+|||++++.++.. .+ .++|||||+++|+.||.++|.+|...+...
T Consensus 112 ~~~~r~~Q~~av~~~l~~~---~~il~apTGsGKT~i~~~l~~~~~~~~~~~vLilvpt~eL~~Q~~~~l~~~~~~~~~~ 188 (501)
T PHA02558 112 KIEPHWYQYDAVYEGLKNN---RRLLNLPTSAGKSLIQYLLSRYYLENYEGKVLIIVPTTSLVTQMIDDFVDYRLFPREA 188 (501)
T ss_pred cCCCCHHHHHHHHHHHhcC---ceEEEeCCCCCHHHHHHHHHHHHHhcCCCeEEEEECcHHHHHHHHHHHHHhccccccc
Confidence 3789999999999998875 7999999999999998766532 23 389999999999999999999987665555
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc-ccceEEEE
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGL 177 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~-~~~~~l~L 177 (512)
+..+.++... .....|+|+|++++.... ..++ ..+++||+||||++.+..+..++..+ ++++++||
T Consensus 189 ~~~i~~g~~~--~~~~~I~VaT~qsl~~~~---------~~~~--~~~~~iIvDEaH~~~~~~~~~il~~~~~~~~~lGL 255 (501)
T PHA02558 189 MHKIYSGTAK--DTDAPIVVSTWQSAVKQP---------KEWF--DQFGMVIVDECHLFTGKSLTSIITKLDNCKFKFGL 255 (501)
T ss_pred eeEEecCccc--CCCCCEEEeeHHHHhhch---------hhhc--cccCEEEEEchhcccchhHHHHHHhhhccceEEEE
Confidence 5444444332 235789999999986531 1123 57899999999999999999998887 56789999
Q ss_pred cccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHH
Q 010367 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257 (512)
Q Consensus 178 TATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~ 257 (512)
||||.+.+.....+..++||..+..++.++++.|++.++.+..+.+..+......+. .............++.+...+.
T Consensus 256 TATp~~~~~~~~~~~~~fG~i~~~v~~~~li~~g~l~~~~~~~v~~~~~~~~~~~~~-~~~~~~~~~~l~~~~~Rn~~I~ 334 (501)
T PHA02558 256 TGSLRDGKANILQYVGLFGDIFKPVTTSQLMEEGQVTDLKINSIFLRYPDEDRVKLK-GEDYQEEIKYITSHTKRNKWIA 334 (501)
T ss_pred eccCCCccccHHHHHHhhCCceEEecHHHHHhCCCcCCceEEEEeccCCHHHhhhhc-ccchHHHHHHHhccHHHHHHHH
Confidence 999976555555567789999999999999999999999888777766544322110 0000011111223344555566
Q ss_pred HHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEe-CCCcccccCc
Q 010367 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDNSIDIP 331 (512)
Q Consensus 258 ~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t-~~~~~GlDlp 331 (512)
.++.... ..+.+++|||.++++++.+++.|+ +.++||++++++|.++++.|+.+ ...+||+| +++++|+|+|
T Consensus 335 ~~~~~~~-~~~~~~lV~~~~~~h~~~L~~~L~~~g~~v~~i~G~~~~~eR~~i~~~~~~~-~~~vLvaT~~~l~eG~Dip 412 (501)
T PHA02558 335 NLALKLA-KKGENTFVMFKYVEHGKPLYEMLKKVYDKVYYVSGEVDTEDRNEMKKIAEGG-KGIIIVASYGVFSTGISIK 412 (501)
T ss_pred HHHHHHH-hcCCCEEEEEEEHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHhCC-CCeEEEEEcceeccccccc
Confidence 6665554 567899999999999999999993 45799999999999999999986 78899987 8999999999
Q ss_pred cccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcH----------------hhHHHHHH
Q 010367 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ----------------EMFYSTKR 395 (512)
Q Consensus 332 ~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~----------------e~~~~~~r 395 (512)
++++||++++. .|...++|++||++|.+++++ .+.+|++++.-.+ ....+..|
T Consensus 413 ~ld~vIl~~p~-~s~~~~~QriGR~~R~~~~K~----------~~~i~D~vD~~~~~~~~~~~~~~~~~~~~~~~h~~~r 481 (501)
T PHA02558 413 NLHHVIFAHPS-KSKIIVLQSIGRVLRKHGSKS----------IATVWDIIDDLSVKPKSANAKKKYVHLNYALKHALER 481 (501)
T ss_pred cccEEEEecCC-cchhhhhhhhhccccCCCCCc----------eEEEEEeecccccccccccccchhhhhhHHHHHHHHH
Confidence 99999988655 499999999999999997544 7899999975442 23455667
Q ss_pred HHHHHhcCCceEEe
Q 010367 396 QQFLIDQGYSFKVI 409 (512)
Q Consensus 396 ~~~l~~~g~~~~~i 409 (512)
.+.+.++.+.+.++
T Consensus 482 ~~~y~~~~~~~~~~ 495 (501)
T PHA02558 482 IKIYNEEKFNYEIK 495 (501)
T ss_pred HHHHhhccCceEEE
Confidence 77788888877765
No 7
>PLN03142 Probable chromatin-remodeling complex ATPase chain; Provisional
Probab=100.00 E-value=4.2e-45 Score=402.03 Aligned_cols=347 Identities=19% Similarity=0.273 Sum_probs=264.4
Q ss_pred CCCcHHHHHHHHHHHh---CCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 24 AQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
.+|||||.+++.+|+. ++ .+|||+++||+|||+++++++..+ .+++|||||.+ ++.||.++|.+|+
T Consensus 168 ~~Lr~YQleGlnWLi~l~~~g--~gGILADEMGLGKTlQaIalL~~L~~~~~~~gp~LIVvP~S-lL~nW~~Ei~kw~-- 242 (1033)
T PLN03142 168 GKMRDYQLAGLNWLIRLYENG--INGILADEMGLGKTLQTISLLGYLHEYRGITGPHMVVAPKS-TLGNWMNEIRRFC-- 242 (1033)
T ss_pred cchHHHHHHHHHHHHHHHhcC--CCEEEEeCCCccHHHHHHHHHHHHHHhcCCCCCEEEEeChH-HHHHHHHHHHHHC--
Confidence 5899999999999864 33 489999999999999999888654 35899999976 5899999999995
Q ss_pred CCCcEEEEcCCcccc--------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHH
Q 010367 95 QDDQICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRK 164 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~ 164 (512)
+...+..++|....+ ..+..+|+||||+++... ...|....|++||+||||++++. ...+
T Consensus 243 p~l~v~~~~G~~~eR~~~~~~~~~~~~~dVvITSYe~l~~e----------~~~L~k~~W~~VIvDEAHrIKN~~Sklsk 312 (1033)
T PLN03142 243 PVLRAVKFHGNPEERAHQREELLVAGKFDVCVTSFEMAIKE----------KTALKRFSWRYIIIDEAHRIKNENSLLSK 312 (1033)
T ss_pred CCCceEEEeCCHHHHHHHHHHHhcccCCCcceecHHHHHHH----------HHHhccCCCCEEEEcCccccCCHHHHHHH
Confidence 455778888864321 135688999999998753 34555678999999999999986 4556
Q ss_pred HHHhcccceEEEEcccCCCCcchH-hhhHhhhCCcee----------------------------------eecHHHHHh
Q 010367 165 VISLTKSHCKLGLTATLVREDERI-TDLNFLIGPKLY----------------------------------EANWLDLVK 209 (512)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~~~-~~l~~l~gp~~~----------------------------------~~~~~~l~~ 209 (512)
++..+.+.++|+|||||.+++-.. ..+..++.|..+ +....++.
T Consensus 313 alr~L~a~~RLLLTGTPlqNnl~ELwsLL~FL~P~~f~s~~~F~~~f~~~~~~~~~e~i~~L~~~L~pf~LRR~KsdV~- 391 (1033)
T PLN03142 313 TMRLFSTNYRLLITGTPLQNNLHELWALLNFLLPEIFSSAETFDEWFQISGENDQQEVVQQLHKVLRPFLLRRLKSDVE- 391 (1033)
T ss_pred HHHHhhcCcEEEEecCCCCCCHHHHHHHHhcCCCCcCCCHHHHHHHHccccccchHHHHHHHHHHhhHHHhhhhHHHHh-
Confidence 777888999999999999876332 123333333322 11111211
Q ss_pred CCCcccceeEEEEcCCCHHHHHHH---HHhhc------hHHHHHH------------------------------hhcCc
Q 010367 210 GGFIANVQCAEVWCPMTKEFFSEY---LKKEN------SKKKQAL------------------------------YVMNP 250 (512)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~~~~~~---l~~~~------~~~~~~~------------------------------~~~~~ 250 (512)
..+.+.....++++|++.....| +.... .....++ ...++
T Consensus 392 -~~LPpK~e~iv~v~LS~~Qk~lY~~ll~k~~~~l~~g~~~~~LlnilmqLRk~cnHP~L~~~~ep~~~~~~~e~lie~S 470 (1033)
T PLN03142 392 -KGLPPKKETILKVGMSQMQKQYYKALLQKDLDVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGEHLVENS 470 (1033)
T ss_pred -hhCCCceeEEEeeCCCHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHhCCHHhhhcccccCcccchhHHhhhh
Confidence 13556667788899987654333 21100 0000000 11235
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCC--CccEEEEeCC
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSR--DLNTIFLSKV 323 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~--~~~vlv~t~~ 323 (512)
+|+.++..|+..+. ..|+|+||||+++..++.+..+| +...++|+++..+|.+++++|+..+ ...+|++|++
T Consensus 471 gKl~lLdkLL~~Lk-~~g~KVLIFSQft~~LdiLed~L~~~g~~y~rIdGsts~~eRq~~Id~Fn~~~s~~~VfLLSTrA 549 (1033)
T PLN03142 471 GKMVLLDKLLPKLK-ERDSRVLIFSQMTRLLDILEDYLMYRGYQYCRIDGNTGGEDRDASIDAFNKPGSEKFVFLLSTRA 549 (1033)
T ss_pred hHHHHHHHHHHHHH-hcCCeEEeehhHHHHHHHHHHHHHHcCCcEEEECCCCCHHHHHHHHHHhccccCCceEEEEeccc
Confidence 78889999998887 78999999999999999999887 2346999999999999999998752 2356778999
Q ss_pred CcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHH
Q 010367 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (512)
|+.||||+.|++||+++++| ||..+.|++||+||+| |.+.|.+|+|++.+|+|+.+..+..+++.
T Consensus 550 GGlGINLt~Ad~VIiyD~dW-NP~~d~QAidRaHRIG-----------Qkk~V~VyRLIt~gTIEEkIlera~~Kl~ 614 (1033)
T PLN03142 550 GGLGINLATADIVILYDSDW-NPQVDLQAQDRAHRIG-----------QKKEVQVFRFCTEYTIEEKVIERAYKKLA 614 (1033)
T ss_pred cccCCchhhCCEEEEeCCCC-ChHHHHHHHHHhhhcC-----------CCceEEEEEEEeCCcHHHHHHHHHHHHHH
Confidence 99999999999999999988 9999999999999999 56679999999999999988877666554
No 8
>KOG0389 consensus SNF2 family DNA-dependent ATPase [Chromatin structure and dynamics]
Probab=100.00 E-value=3.8e-43 Score=360.12 Aligned_cols=363 Identities=20% Similarity=0.291 Sum_probs=279.2
Q ss_pred CCCCCccCCCCCCCCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHH
Q 010367 12 VNPDLNMELKPHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQ 83 (512)
Q Consensus 12 ~~~~~~~~l~~~~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Q 83 (512)
++...+-.+.+.++|.|||.-+++|+ +.++ -+||++++||+|||++++++.+.+ .+|-|||||+++ +++
T Consensus 386 ~~~~qp~~l~s~i~LkdYQlvGvNWL~Llyk~~--l~gILADEMGLGKTiQvIaFlayLkq~g~~gpHLVVvPsST-leN 462 (941)
T KOG0389|consen 386 FITEQPKLLSSGIQLKDYQLVGVNWLLLLYKKK--LNGILADEMGLGKTIQVIAFLAYLKQIGNPGPHLVVVPSST-LEN 462 (941)
T ss_pred ccccCccccCCCCcccchhhhhHHHHHHHHHcc--ccceehhhccCcchhHHHHHHHHHHHcCCCCCcEEEecchh-HHH
Confidence 34444556788899999999999986 3333 489999999999999999888765 369999999998 899
Q ss_pred HHHHHHHhhCCCCCcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCC
Q 010367 84 WAFQFKLWSTIQDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (512)
Q Consensus 84 w~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEa 154 (512)
|.+||.+| .|...|..|+|...++ -....+|++|||+..... ..-..+|+..+|+++|+||+
T Consensus 463 WlrEf~kw--CPsl~Ve~YyGSq~ER~~lR~~i~~~~~~ydVllTTY~la~~~-------kdDRsflk~~~~n~viyDEg 533 (941)
T KOG0389|consen 463 WLREFAKW--CPSLKVEPYYGSQDERRELRERIKKNKDDYDVLLTTYNLAASS-------KDDRSFLKNQKFNYVIYDEG 533 (941)
T ss_pred HHHHHHHh--CCceEEEeccCcHHHHHHHHHHHhccCCCccEEEEEeecccCC-------hHHHHHHHhccccEEEecch
Confidence 99999999 5677899999975432 124799999999988754 23345677789999999999
Q ss_pred CCCCch---HHHHHHHhcccceEEEEcccCCCCcchHh-hhHhhhCCceeeecHHHHH---hC-----------------
Q 010367 155 HVVPAH---MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKLYEANWLDLV---KG----------------- 210 (512)
Q Consensus 155 H~~~~~---~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~l~gp~~~~~~~~~l~---~~----------------- 210 (512)
|.+++. .|+.++. +++.++|+|||||.+++-++. .|..++-|+++.....++- +.
T Consensus 534 HmLKN~~SeRy~~LM~-I~An~RlLLTGTPLQNNL~ELiSLL~FvlP~vF~~~~~dl~~if~~k~~~d~d~e~~~l~qer 612 (941)
T KOG0389|consen 534 HMLKNRTSERYKHLMS-INANFRLLLTGTPLQNNLKELISLLAFVLPKVFDSSMEDLDVIFKAKKTSDGDIENALLSQER 612 (941)
T ss_pred hhhhccchHHHHHhcc-ccccceEEeeCCcccccHHHHHHHHHHHhhHhhhccchHHHHHHhccCCccchhhHHHHHHHH
Confidence 999976 5555444 578999999999999886643 2333444444333221111 00
Q ss_pred ---------------------CCcccceeEEEEcCCCHHHHHHHHH---hh---------c-------h----HH-----
Q 010367 211 ---------------------GFIANVQCAEVWCPMTKEFFSEYLK---KE---------N-------S----KK----- 241 (512)
Q Consensus 211 ---------------------~~l~~~~~~~~~~~~~~~~~~~~l~---~~---------~-------~----~~----- 241 (512)
+.+++..-...+|+|+.....-|.. .. + . ++
T Consensus 613 IsrAK~im~PFILRR~K~qVL~~LPpK~~~Ie~c~mse~Q~~~Y~~~~~~~~~~~~~~~~ns~~~~~~vlmqlRK~AnHP 692 (941)
T KOG0389|consen 613 ISRAKTIMKPFILRRLKSQVLKQLPPKIQRIEYCEMSEKQKQLYDELIELYDVKLNEVSKNSELKSGNVLMQLRKAANHP 692 (941)
T ss_pred HHHHHHhhhHHHHHHHHHHHHHhcCCccceeEeeecchHHHHHHHHHHHHHhhhccccccccccccchHHHHHHHHhcCh
Confidence 2344555566778887655333221 00 0 0 00
Q ss_pred ----------------HHHH-------------------------------------------hhcCcchHHHHHHHHHH
Q 010367 242 ----------------KQAL-------------------------------------------YVMNPNKFRACEFLIRF 262 (512)
Q Consensus 242 ----------------~~~~-------------------------------------------~~~~~~k~~~l~~ll~~ 262 (512)
+.++ .++.++|+..+..|+..
T Consensus 693 LL~R~~Y~de~L~~mak~il~e~ay~~~n~qyIfEDm~~msDfelHqLc~~f~~~~~f~L~d~~~mdSgK~r~L~~LLp~ 772 (941)
T KOG0389|consen 693 LLFRSIYTDEKLRKMAKRILNEPAYKKANEQYIFEDMEVMSDFELHQLCCQFRHLSKFQLKDDLWMDSGKCRKLKELLPK 772 (941)
T ss_pred hHHHHhccHHHHHHHHHHHhCchhhhhcCHHHHHHHHHhhhHHHHHHHHHhcCCCcccccCCchhhhhhhHhHHHHHHHH
Confidence 0000 03357899999999998
Q ss_pred hhhcCCCeEEEEecCHHHHHHHHHHhC---C--CceeCCCCHHHHHHHHHHhhCCCCccEEE-EeCCCcccccCccccEE
Q 010367 263 HEQQRGDKIIVFADNLFALTEYAMKLR---K--PMIYGATSHVERTKILQAFKCSRDLNTIF-LSKVGDNSIDIPEANVI 336 (512)
Q Consensus 263 ~~~~~g~k~iVf~~~~~~~~~l~~~L~---~--~~i~g~~~~~eR~~il~~F~~~~~~~vlv-~t~~~~~GlDlp~~~~v 336 (512)
.. ..|++||+|++++.+++++...|+ . ..++|.|....|+.+++.|.....+.|++ +|++||.||||..|++|
T Consensus 773 ~k-~~G~RVLiFSQFTqmLDILE~~L~~l~~~ylRLDGsTqV~~RQ~lId~Fn~d~difVFLLSTKAGG~GINLt~An~V 851 (941)
T KOG0389|consen 773 IK-KKGDRVLIFSQFTQMLDILEVVLDTLGYKYLRLDGSTQVNDRQDLIDEFNTDKDIFVFLLSTKAGGFGINLTCANTV 851 (941)
T ss_pred Hh-hcCCEEEEeeHHHHHHHHHHHHHHhcCceEEeecCCccchHHHHHHHhhccCCceEEEEEeeccCcceecccccceE
Confidence 88 889999999999999999988884 2 35899999999999999999986676655 48999999999999999
Q ss_pred EEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHH
Q 010367 337 IQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (512)
Q Consensus 337 I~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (512)
|++|-.+ ||-...|+.+|+||.| |.++|.||+||+++|+|+.+.+..+.+|.
T Consensus 852 IihD~dF-NP~dD~QAEDRcHRvG-----------QtkpVtV~rLItk~TIEE~I~~lA~~KL~ 903 (941)
T KOG0389|consen 852 IIHDIDF-NPYDDKQAEDRCHRVG-----------QTKPVTVYRLITKSTIEEGILRLAKTKLA 903 (941)
T ss_pred EEeecCC-CCcccchhHHHHHhhC-----------CcceeEEEEEEecCcHHHHHHHHHHHhhh
Confidence 9998888 9999999999999999 77889999999999999999887777775
No 9
>KOG0392 consensus SNF2 family DNA-dependent ATPase domain-containing protein [Transcription]
Probab=100.00 E-value=1.3e-41 Score=361.16 Aligned_cols=352 Identities=18% Similarity=0.297 Sum_probs=264.4
Q ss_pred CccCCCCCCCCcHHHHHHHHHH-HhCCCCcceEEEcCCCCcHHHHHHHHHHh----c--------CCCEEEEEcChhhHH
Q 010367 16 LNMELKPHAQPRPYQEKSLSKM-FGNGRARSGIIVLPCGAGKSLVGVSAACR----I--------KKSCLCLATNAVSVD 82 (512)
Q Consensus 16 ~~~~l~~~~~Lr~yQ~~al~~~-~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~--------~~~~Lvl~P~~~L~~ 82 (512)
..|..+-+.+||.||+++++|+ |-+.+.-+||+|+.||+|||++++++++. . ..|.|||||+. |+.
T Consensus 966 y~Ip~pI~a~LRkYQqEGVnWLaFLnky~LHGILcDDMGLGKTLQticilAsd~y~r~s~~~e~~~~PSLIVCPsT-LtG 1044 (1549)
T KOG0392|consen 966 YKIPVPISAKLRKYQQEGVNWLAFLNKYKLHGILCDDMGLGKTLQTICILASDHYKRRSESSEFNRLPSLIVCPST-LTG 1044 (1549)
T ss_pred cccccchhHHHHHHHHhccHHHHHHHHhcccceeeccccccHHHHHHHHHHHHHHhhcccchhhccCCeEEECCch-hhh
Confidence 3444455689999999999986 44445568999999999999999988842 1 24799999966 899
Q ss_pred HHHHHHHHhhCCCCCcEEEEcCCccccc-----cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCC
Q 010367 83 QWAFQFKLWSTIQDDQICRFTSDSKERF-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (512)
Q Consensus 83 Qw~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~ 157 (512)
.|..|+.+|+.. .+|..|.|...++. -..++|+|++|+.+.+. .+.+.+..|.++|+||.|.+
T Consensus 1045 HW~~E~~kf~pf--L~v~~yvg~p~~r~~lR~q~~~~~iiVtSYDv~RnD----------~d~l~~~~wNYcVLDEGHVi 1112 (1549)
T KOG0392|consen 1045 HWKSEVKKFFPF--LKVLQYVGPPAERRELRDQYKNANIIVTSYDVVRND----------VDYLIKIDWNYCVLDEGHVI 1112 (1549)
T ss_pred HHHHHHHHhcch--hhhhhhcCChHHHHHHHhhccccceEEeeHHHHHHH----------HHHHHhcccceEEecCccee
Confidence 999999999654 67788887654432 24579999999999865 57777899999999999999
Q ss_pred Cch--HHHHHHHhcccceEEEEcccCCCCcchHh-hhHhhhCCceee----------------e----cHHHHHhCC---
Q 010367 158 PAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKLYE----------------A----NWLDLVKGG--- 211 (512)
Q Consensus 158 ~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~l~gp~~~~----------------~----~~~~l~~~~--- 211 (512)
++. ...+.++.+.+.++|.|||||++|+-.+. .|+.++-|.... . +-.+ .+.|
T Consensus 1113 kN~ktkl~kavkqL~a~hRLILSGTPIQNnvleLWSLFdFLMPGfLGtEKqFqsrf~kpI~asRd~K~Sske-~EaG~lA 1191 (1549)
T KOG0392|consen 1113 KNSKTKLTKAVKQLRANHRLILSGTPIQNNVLELWSLFDFLMPGFLGTEKQFQSRFGKPILASRDPKSSSKE-QEAGVLA 1191 (1549)
T ss_pred cchHHHHHHHHHHHhhcceEEeeCCCcccCHHHHHHHHHHhcccccCcHHHHHHHhcchhhhhcCcccchhH-HHhhHHH
Confidence 986 45667888899999999999999874422 233332222100 0 0000 0112
Q ss_pred ----------------------CcccceeEEEEcCCCHHH---HHHHHHhhc---------------hHH----HHHHh-
Q 010367 212 ----------------------FIANVQCAEVWCPMTKEF---FSEYLKKEN---------------SKK----KQALY- 246 (512)
Q Consensus 212 ----------------------~l~~~~~~~~~~~~~~~~---~~~~l~~~~---------------~~~----~~~~~- 246 (512)
-+.|..+..++|++++.+ |+++.++.+ ..+ +++.+
T Consensus 1192 leaLHKqVLPF~LRRlKedVL~DLPpKIIQDyyCeLs~lQ~kLY~df~~~~k~~~~~~~d~~~~S~gt~~~HvFqaLqYl 1271 (1549)
T KOG0392|consen 1192 LEALHKQVLPFLLRRLKEDVLKDLPPKIIQDYYCELSPLQKKLYRDFVKKAKQCVSSQIDGGEESLGTDKTHVFQALQYL 1271 (1549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhCChhhhhheeeccCHHHHHHHHHHHHHhccccccccccchhccCcchHHHHHHHHHH
Confidence 233556677888887654 444443200 000 01110
Q ss_pred ----------------------------------hcCcchHHHHHHHHHHhhh-------------cCCCeEEEEecCHH
Q 010367 247 ----------------------------------VMNPNKFRACEFLIRFHEQ-------------QRGDKIIVFADNLF 279 (512)
Q Consensus 247 ----------------------------------~~~~~k~~~l~~ll~~~~~-------------~~g~k~iVf~~~~~ 279 (512)
.....|+.++..|+..-.. -.+++++|||+.+.
T Consensus 1272 rKLcnHpaLvlt~~hp~la~i~~~l~~~~~~LHdi~hspKl~AL~qLL~eCGig~~~~~~~g~~s~vsqHRiLIFcQlK~ 1351 (1549)
T KOG0392|consen 1272 RKLCNHPALVLTPVHPDLAAIVSHLAHFNSSLHDIQHSPKLSALKQLLSECGIGNNSDSEVGTPSDVSQHRILIFCQLKS 1351 (1549)
T ss_pred HHhcCCcceeeCCCcchHHHHHHHHHHhhhhHHHhhhchhHHHHHHHHHHhCCCCCCcccccCcchhccceeEEeeeHHH
Confidence 1234577888888854321 14689999999999
Q ss_pred HHHHHHHHhC------CC--ceeCCCCHHHHHHHHHHhhCCCCccEEEE-eCCCcccccCccccEEEEecCCCCCHHHHH
Q 010367 280 ALTEYAMKLR------KP--MIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEA 350 (512)
Q Consensus 280 ~~~~l~~~L~------~~--~i~g~~~~~eR~~il~~F~~~~~~~vlv~-t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~ 350 (512)
+++.+.+-|- +. .++|+.++..|+++.++|+++|.++||+. |.+||.|+|+.+|++||++.-.| ||....
T Consensus 1352 mlDlVekDL~k~~mpsVtymRLDGSVpp~~R~kiV~~FN~DptIDvLlLTThVGGLGLNLTGADTVVFvEHDW-NPMrDL 1430 (1549)
T KOG0392|consen 1352 MLDLVEKDLFKKYMPSVTYMRLDGSVPPGDRQKIVERFNEDPTIDVLLLTTHVGGLGLNLTGADTVVFVEHDW-NPMRDL 1430 (1549)
T ss_pred HHHHHHHHHhhhhcCceeEEEecCCCCcHHHHHHHHHhcCCCceeEEEEeeeccccccccCCCceEEEEecCC-CchhhH
Confidence 9999988872 22 58999999999999999999999999887 69999999999999999996555 999999
Q ss_pred HHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHH
Q 010367 351 QRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYST 393 (512)
Q Consensus 351 Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~ 393 (512)
|+++||||+| |.+.+.+|++++++|.||++..
T Consensus 1431 QAMDRAHRIG-----------QKrvVNVyRlItrGTLEEKVMg 1462 (1549)
T KOG0392|consen 1431 QAMDRAHRIG-----------QKRVVNVYRLITRGTLEEKVMG 1462 (1549)
T ss_pred HHHHHHHhhc-----------CceeeeeeeehhcccHHHHHhh
Confidence 9999999999 7778999999999999997754
No 10
>KOG0387 consensus Transcription-coupled repair protein CSB/RAD26 (contains SNF2 family DNA-dependent ATPase domain) [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=2.3e-41 Score=347.52 Aligned_cols=350 Identities=18% Similarity=0.275 Sum_probs=263.7
Q ss_pred CCCcHHHHHHHHHHHhCC-CCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
..|+|||+++++|+++-. ...+|||.++||+|||++.+++++.+ -+|+|||||.. ++.||.+||..| .++
T Consensus 204 ~~Lf~yQreGV~WL~~L~~q~~GGILgDeMGLGKTIQiisFLaaL~~S~k~~~paLIVCP~T-ii~qW~~E~~~w--~p~ 280 (923)
T KOG0387|consen 204 SKLFPYQREGVQWLWELYCQRAGGILGDEMGLGKTIQIISFLAALHHSGKLTKPALIVCPAT-IIHQWMKEFQTW--WPP 280 (923)
T ss_pred HHhhHHHHHHHHHHHHHHhccCCCeecccccCccchhHHHHHHHHhhcccccCceEEEccHH-HHHHHHHHHHHh--Ccc
Confidence 369999999999987632 23589999999999999988877544 36999999966 799999999999 567
Q ss_pred CcEEEEcCCcc-------------c-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 97 DQICRFTSDSK-------------E-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 97 ~~v~~~~~~~~-------------~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
..|.++++... + ......+|+||||+.+... -+.+....|+++|+||+|++.
T Consensus 281 ~rv~ilh~t~s~~r~~~~~~~~~~~~~L~r~~~~~~~ilitty~~~r~~----------~d~l~~~~W~y~ILDEGH~Ir 350 (923)
T KOG0387|consen 281 FRVFILHGTGSGARYDASHSSHKKDKLLIRKVATDGGILITTYDGFRIQ----------GDDLLGILWDYVILDEGHRIR 350 (923)
T ss_pred eEEEEEecCCcccccccchhhhhhhhhheeeecccCcEEEEehhhhccc----------CcccccccccEEEecCccccc
Confidence 78888877533 1 1124577999999988654 234556899999999999999
Q ss_pred ch--HHHHHHHhcccceEEEEcccCCCCcchHh-hhHhhhCCce------------------------------------
Q 010367 159 AH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKL------------------------------------ 199 (512)
Q Consensus 159 ~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~l~gp~~------------------------------------ 199 (512)
++ .....+..++...+|+|||||.+|+-.+. .|+.++-|-.
T Consensus 351 Npns~islackki~T~~RiILSGTPiQNnL~ELwsLfDFv~PG~Lgt~~~F~~~f~~pI~~GgyaNAs~~qv~~aykca~ 430 (923)
T KOG0387|consen 351 NPNSKISLACKKIRTVHRIILSGTPIQNNLTELWSLFDFVFPGKLGTLPVFQQNFEHPINRGGYANASPRQVQTAYKCAV 430 (923)
T ss_pred CCccHHHHHHHhccccceEEeeCccccchHHHHHHHhhhccCCcccchHHHHhhhhhheeccccCCCCHHHHHHHHHHHH
Confidence 87 55556777888999999999999874432 3444443321
Q ss_pred ----------eeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHH--------H---------HHHh------
Q 010367 200 ----------YEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK--------K---------QALY------ 246 (512)
Q Consensus 200 ----------~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~---------~~~~------ 246 (512)
.+....+... -.+....-..++|.+++...+.|.+--.+.. + +.++
T Consensus 431 ~Lr~lI~PylLRR~K~dv~~-~~Lp~K~E~VlfC~LT~~QR~~Y~~fl~s~~v~~i~ng~~~~l~Gi~iLrkICnHPdll 509 (923)
T KOG0387|consen 431 ALRDLISPYLLRRMKSDVKG-LKLPKKEEIVLFCRLTKLQRRLYQRFLNSSEVNKILNGKRNCLSGIDILRKICNHPDLL 509 (923)
T ss_pred HHHHHhHHHHHHHHHHHhhh-ccCCCccceEEEEeccHHHHHHHHHHhhhHHHHHHHcCCccceechHHHHhhcCCcccc
Confidence 1111111111 1455666778999999877554442111100 0 0000
Q ss_pred ----------------hcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC------CCceeCCCCHHHHHH
Q 010367 247 ----------------VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTK 304 (512)
Q Consensus 247 ----------------~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~ 304 (512)
....+|+.++..|+..-. ..|+++|+|++++.+++.+...|. ...++|.++...|+.
T Consensus 510 ~~~~~~~~~~~D~~g~~k~sGKm~vl~~ll~~W~-kqg~rvllFsqs~~mLdilE~fL~~~~~ysylRmDGtT~~~~R~~ 588 (923)
T KOG0387|consen 510 DRRDEDEKQGPDYEGDPKRSGKMKVLAKLLKDWK-KQGDRVLLFSQSRQMLDILESFLRRAKGYSYLRMDGTTPAALRQK 588 (923)
T ss_pred cCcccccccCCCcCCChhhcchHHHHHHHHHHHh-hCCCEEEEehhHHHHHHHHHHHHHhcCCceEEEecCCCccchhhH
Confidence 112458889999986544 679999999999999999999884 234899999999999
Q ss_pred HHHHhhCCCCccEEE-EeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEe
Q 010367 305 ILQAFKCSRDLNTIF-LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVS 383 (512)
Q Consensus 305 il~~F~~~~~~~vlv-~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~ 383 (512)
++++|++++.+.|++ +|++||.|+||..||.||++||.| ||....|+..|+.|+|| .+.|.||+|++
T Consensus 589 lVd~Fne~~s~~VFLLTTrvGGLGlNLTgAnRVIIfDPdW-NPStD~QAreRawRiGQ-----------kkdV~VYRL~t 656 (923)
T KOG0387|consen 589 LVDRFNEDESIFVFLLTTRVGGLGLNLTGANRVIIFDPDW-NPSTDNQARERAWRIGQ-----------KKDVVVYRLMT 656 (923)
T ss_pred HHHhhcCCCceEEEEEEecccccccccccCceEEEECCCC-CCccchHHHHHHHhhcC-----------ccceEEEEEec
Confidence 999999986666655 479999999999999999999988 99999999999999994 55699999999
Q ss_pred CCcHhhHHHHHH--HHHHH
Q 010367 384 TDTQEMFYSTKR--QQFLI 400 (512)
Q Consensus 384 ~~t~e~~~~~~r--~~~l~ 400 (512)
.+|+|+.++.++ .++|.
T Consensus 657 ~gTIEEkiY~rQI~Kq~Lt 675 (923)
T KOG0387|consen 657 AGTIEEKIYHRQIFKQFLT 675 (923)
T ss_pred CCcHHHHHHHHHHHHHHHH
Confidence 999999777543 44443
No 11
>COG1111 MPH1 ERCC4-like helicases [DNA replication, recombination, and repair]
Probab=100.00 E-value=2.1e-39 Score=320.57 Aligned_cols=344 Identities=23% Similarity=0.300 Sum_probs=244.4
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
+...+.|.||.......+.. ++++++|||+|||++|+.++... ++++|+++||+-|+.|....|.+++++|+
T Consensus 11 p~~ie~R~YQ~~i~a~al~~----NtLvvlPTGLGKT~IA~~V~~~~l~~~~~kvlfLAPTKPLV~Qh~~~~~~v~~ip~ 86 (542)
T COG1111 11 PNTIEPRLYQLNIAAKALFK----NTLVVLPTGLGKTFIAAMVIANRLRWFGGKVLFLAPTKPLVLQHAEFCRKVTGIPE 86 (542)
T ss_pred cccccHHHHHHHHHHHHhhc----CeEEEecCCccHHHHHHHHHHHHHHhcCCeEEEecCCchHHHHHHHHHHHHhCCCh
Confidence 44579999999999988776 68999999999999999888643 45799999999999999999999999999
Q ss_pred CcEEEEcCCccc----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHHHHHH----
Q 010367 97 DQICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVIS---- 167 (512)
Q Consensus 97 ~~v~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~~~l~---- 167 (512)
..+..++|.... ..+....|+|+|||.+.+....+ -+...++.++|+||||+..++ .|..+..
T Consensus 87 ~~i~~ltGev~p~~R~~~w~~~kVfvaTPQvveNDl~~G--------rid~~dv~~lifDEAHRAvGnyAYv~Va~~y~~ 158 (542)
T COG1111 87 DEIAALTGEVRPEEREELWAKKKVFVATPQVVENDLKAG--------RIDLDDVSLLIFDEAHRAVGNYAYVFVAKEYLR 158 (542)
T ss_pred hheeeecCCCChHHHHHHHhhCCEEEeccHHHHhHHhcC--------ccChHHceEEEechhhhccCcchHHHHHHHHHH
Confidence 999999997542 24577889999999998764322 122257889999999998865 5554444
Q ss_pred hcccceEEEEcccCCCCcchHhhhHhhhCCceeee-cHHHHHhCCCcccceeEEEEcCCCHHH-----------------
Q 010367 168 LTKSHCKLGLTATLVREDERITDLNFLIGPKLYEA-NWLDLVKGGFIANVQCAEVWCPMTKEF----------------- 229 (512)
Q Consensus 168 ~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~-~~~~l~~~~~l~~~~~~~~~~~~~~~~----------------- 229 (512)
.-+.+.+|||||||....+.+...-.-+|-...+. +..+.--..|+.+....-+.+++++++
T Consensus 159 ~~k~~~ilgLTASPGs~~ekI~eV~~nLgIe~vevrTE~d~DV~~Yv~~~kve~ikV~lp~e~~~ir~~l~~~l~~~Lk~ 238 (542)
T COG1111 159 SAKNPLILGLTASPGSDLEKIQEVVENLGIEKVEVRTEEDPDVRPYVKKIKVEWIKVDLPEEIKEIRDLLRDALKPRLKP 238 (542)
T ss_pred hccCceEEEEecCCCCCHHHHHHHHHhCCcceEEEecCCCccHHHhhccceeEEEeccCcHHHHHHHHHHHHHHHHHHHH
Confidence 33445799999999876555443322222111000 000000011333333333333333222
Q ss_pred ---------------------------------------------------------------HHHHHHhh----ch--H
Q 010367 230 ---------------------------------------------------------------FSEYLKKE----NS--K 240 (512)
Q Consensus 230 ---------------------------------------------------------------~~~~l~~~----~~--~ 240 (512)
+..|+... .. .
T Consensus 239 L~~~g~~~~~~~~~~kdl~~~~~~~~~~a~~~~~~~~~~l~~~a~~~kl~~a~elletqGi~~~~~Yl~~l~e~~~~~~s 318 (542)
T COG1111 239 LKELGVIESSSPVSKKDLLELRQIRLIMAKNEDSDKFRLLSVLAEAIKLAHALELLETQGIRPFYQYLEKLEEEATKGGS 318 (542)
T ss_pred HHHcCceeccCcccHhHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHHHHHHhcccch
Confidence 00111000 00 0
Q ss_pred ------------HHH---HH----hhcCcchHHHHHHHHH-HhhhcCCCeEEEEecCHHHHHHHHHHhC-----CC--ce
Q 010367 241 ------------KKQ---AL----YVMNPNKFRACEFLIR-FHEQQRGDKIIVFADNLFALTEYAMKLR-----KP--MI 293 (512)
Q Consensus 241 ------------~~~---~~----~~~~~~k~~~l~~ll~-~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~--~i 293 (512)
.+. ++ ......|++.+..|++ ..+...+.++|||++++.+++.+.++|+ +. ++
T Consensus 319 k~a~~l~~d~~~~~al~~~~~~~~~~v~HPKl~~l~eilke~~~k~~~~RvIVFT~yRdTae~i~~~L~~~~~~~~~rFi 398 (542)
T COG1111 319 KAAKSLLADPYFKRALRLLIRADESGVEHPKLEKLREILKEQLEKNGDSRVIVFTEYRDTAEEIVNFLKKIGIKARVRFI 398 (542)
T ss_pred HHHHHHhcChhhHHHHHHHHHhccccCCCccHHHHHHHHHHHHhcCCCceEEEEehhHhHHHHHHHHHHhcCCcceeEEe
Confidence 000 00 0112347777777774 3333567899999999999999999993 21 21
Q ss_pred -------eCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCcccc
Q 010367 294 -------YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366 (512)
Q Consensus 294 -------~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~ 366 (512)
.-+|+|.+..+++++|++| +++|||+|++|++|+|+|+++.||+|++-+ |+...+||.||+||..
T Consensus 399 GQa~r~~~~GMsQkeQ~eiI~~Fr~G-e~nVLVaTSVgEEGLDIp~vDlVifYEpvp-SeIR~IQR~GRTGR~r------ 470 (542)
T COG1111 399 GQASREGDKGMSQKEQKEIIDQFRKG-EYNVLVATSVGEEGLDIPEVDLVIFYEPVP-SEIRSIQRKGRTGRKR------ 470 (542)
T ss_pred eccccccccccCHHHHHHHHHHHhcC-CceEEEEcccccccCCCCcccEEEEecCCc-HHHHHHHhhCccccCC------
Confidence 2468999999999999998 999999999999999999999999998766 9999999999999975
Q ss_pred ccCCCCceeEEEEEEEeCCcHhhHHH
Q 010367 367 MAGGKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 367 ~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
.+.+|-|++++|-++.|+
T Consensus 471 --------~Grv~vLvt~gtrdeayy 488 (542)
T COG1111 471 --------KGRVVVLVTEGTRDEAYY 488 (542)
T ss_pred --------CCeEEEEEecCchHHHHH
Confidence 467889999999998554
No 12
>KOG0386 consensus Chromatin remodeling complex SWI/SNF, component SWI2 and related ATPases (DNA/RNA helicase superfamily) [Chromatin structure and dynamics; Transcription]
Probab=100.00 E-value=1.4e-39 Score=341.14 Aligned_cols=385 Identities=18% Similarity=0.259 Sum_probs=285.3
Q ss_pred CCCCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..+|++||.++++||.+- +..-+||++++||+|||++.++++..+ .+|.|||||+++ ..+|..+|.+| .|
T Consensus 392 GG~Lk~YQl~GLqWmVSLyNNnLNGILADEMGLGKTIQtIsLitYLmE~K~~~GP~LvivPlst-L~NW~~Ef~kW--aP 468 (1157)
T KOG0386|consen 392 GGELKEYQLHGLQWMVSLYNNNLNGILADEMGLGKTIQTISLITYLMEHKQMQGPFLIIVPLST-LVNWSSEFPKW--AP 468 (1157)
T ss_pred CCCCchhhhhhhHHHhhccCCCcccccchhcccchHHHHHHHHHHHHHHcccCCCeEEeccccc-cCCchhhcccc--cc
Confidence 368999999999998642 122599999999999999999998654 579999999998 55799999999 45
Q ss_pred CCcEEEEcCCcccc-------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHH
Q 010367 96 DDQICRFTSDSKER-------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (512)
Q Consensus 96 ~~~v~~~~~~~~~~-------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l 166 (512)
......|.|....+ ..+.++|++|||+.+.+. ...|.+..|.++||||.|++++. .....+
T Consensus 469 Sv~~i~YkGtp~~R~~l~~qir~gKFnVLlTtyEyiikd----------k~lLsKI~W~yMIIDEGHRmKNa~~KLt~~L 538 (1157)
T KOG0386|consen 469 SVQKIQYKGTPQQRSGLTKQQRHGKFNVLLTTYEYIIKD----------KALLSKISWKYMIIDEGHRMKNAICKLTDTL 538 (1157)
T ss_pred ceeeeeeeCCHHHHhhHHHHHhcccceeeeeeHHHhcCC----------HHHHhccCCcceeecccccccchhhHHHHHh
Confidence 55566677753322 237899999999999874 45677789999999999999986 334444
Q ss_pred H-hcccceEEEEcccCCCCcch--HhhhHhhhCCceeeecHHHHHhCCCccccee-------------------------
Q 010367 167 S-LTKSHCKLGLTATLVREDER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQC------------------------- 218 (512)
Q Consensus 167 ~-~~~~~~~l~LTATp~~~~~~--~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~------------------------- 218 (512)
. .+.+.++|+|||||.+++.. |+.|++++ |.++.. ...++++|-+|+.-
T Consensus 539 ~t~y~~q~RLLLTGTPLQN~LpELWaLLNFlL-P~IFnS--~~~FeqWFN~PFantGek~eLteEEtlLIIrRLHkVLRP 615 (1157)
T KOG0386|consen 539 NTHYRAQRRLLLTGTPLQNNLPELWALLNFLL-PNIFNS--CKAFEQWFNQPFANTGEKVELTEEETLLIIRRLHKVLRP 615 (1157)
T ss_pred hccccchhhhhhcCChhhhccHHHHHHHHHhc-cchhhh--HhHHHHHhhhhhhhcCCcccccchHHHHHHHHHHHhhhH
Confidence 4 66778899999999998755 44555544 433221 11122222222211
Q ss_pred -------------------EEEEcCCCHHH---HHHHHHhh-----c--h------------HHHH--------------
Q 010367 219 -------------------AEVWCPMTKEF---FSEYLKKE-----N--S------------KKKQ-------------- 243 (512)
Q Consensus 219 -------------------~~~~~~~~~~~---~~~~l~~~-----~--~------------~~~~-------------- 243 (512)
..+.|.|+.-. |....... . . ..+.
T Consensus 616 FlLRRlKkeVE~~LPdKve~viKC~mSalQq~lY~~m~~~g~l~~d~~~g~~g~k~L~N~imqLRKiCNHP~lf~~ve~~ 695 (1157)
T KOG0386|consen 616 FLLRRLKKEVEQELPDKVEDVIKCDMSALQQSLYKQMQNKGQLLKDTAKGKKGYKPLFNTIMQLRKLCNHPYLFANVENS 695 (1157)
T ss_pred HHHHhhhHHHhhhCchhhhHhhheehhhhhHhhhHHHHhCCCCCcCchhccccchhhhhHhHHHHHhcCCchhhhhhccc
Confidence 12333333221 11110000 0 0 0000
Q ss_pred -------HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhC
Q 010367 244 -------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKC 311 (512)
Q Consensus 244 -------~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~ 311 (512)
...+...+|+.+++.++..+. +.|++++.||+.+..+..+..+|. ...++|.++.++|...++.|+.
T Consensus 696 ~~~~~~~~dL~R~sGKfELLDRiLPKLk-atgHRVLlF~qMTrlmdimEdyL~~~~~kYlRLDG~TK~~eRg~ll~~FN~ 774 (1157)
T KOG0386|consen 696 YTLHYDIKDLVRVSGKFELLDRILPKLK-ATGHRVLLFSQMTRLMDILEDYLQIREYKYLRLDGQTKVEERGDLLEIFNA 774 (1157)
T ss_pred cccccChhHHHHhccHHHHHHhhhHHHH-hcCcchhhHHHHHHHHHHHHHHHhhhhhheeeecCCcchhhHHHHHHHhcC
Confidence 011223579999999999998 899999999999999999999994 3468999999999999999998
Q ss_pred C-CCccE-EEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhh
Q 010367 312 S-RDLNT-IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 312 ~-~~~~v-lv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (512)
. .++.+ |.+|.+|+.|+|+..|++||++++.| ||.++.|+..|+||+|+ .+.|.++++++.+++|+
T Consensus 775 Pds~yf~FllstragglglNlQtadtviifdsdw-np~~d~qaqdrahrigq-----------~~evRv~rl~tv~sveE 842 (1157)
T KOG0386|consen 775 PDSPYFIFLLSTRAGGLGLNLQTADTVIIFDSDW-NPHQDLQAQDRAHRIGQ-----------KKEVRVLRLITVNSVEE 842 (1157)
T ss_pred CCCceeeeeeeecccccccchhhcceEEEecCCC-CchhHHHHHHHHHHhhc-----------hhheeeeeeehhhHHHH
Confidence 6 23333 44589999999999999999999988 99999999999999995 45599999999999999
Q ss_pred HHHHHHHHHHHhcCCceEEeeCCCCCCCCCCCcCCCHHHHHHHHHHHHhcCCcccc
Q 010367 390 FYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAGDDAVG 445 (512)
Q Consensus 390 ~~~~~r~~~l~~~g~~~~~i~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~~~~~~ 445 (512)
.+-...+.+| +.+-+||+. |.++. -++.++++++|+.++...+++++
T Consensus 843 ~il~~a~~Kl---~~d~kviqa--g~fdn----~st~~eR~~~Le~~l~~~~~~~~ 889 (1157)
T KOG0386|consen 843 KILAEAFYKL---DVDGKVIQA--GKFDN----KSTAEEREMFLEQLLEMEGDEEE 889 (1157)
T ss_pred HHHHHHHHhc---CchHhhhhc--ccccC----CCcHHHHHHHHHHHHhCCCcccc
Confidence 8877766555 445688877 66665 57889999999999998776554
No 13
>PRK04914 ATP-dependent helicase HepA; Validated
Probab=100.00 E-value=2.7e-37 Score=339.49 Aligned_cols=348 Identities=16% Similarity=0.169 Sum_probs=239.5
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
..+.|.|||..++..++... ..+++|++++|+|||+.+.+++..+ .+++|||||. .|+.||..|+.+|++++
T Consensus 149 ~~~~l~pHQl~~~~~vl~~~-~~R~LLADEvGLGKTIeAglil~~l~~~g~~~rvLIVvP~-sL~~QW~~El~~kF~l~- 225 (956)
T PRK04914 149 ARASLIPHQLYIAHEVGRRH-APRVLLADEVGLGKTIEAGMIIHQQLLTGRAERVLILVPE-TLQHQWLVEMLRRFNLR- 225 (956)
T ss_pred CCCCCCHHHHHHHHHHhhcc-CCCEEEEeCCcCcHHHHHHHHHHHHHHcCCCCcEEEEcCH-HHHHHHHHHHHHHhCCC-
Confidence 45789999999998776553 3578999999999999999888653 2599999997 58999999999888764
Q ss_pred CcEEEEcCCccc-------cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc------hHHH
Q 010367 97 DQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFR 163 (512)
Q Consensus 97 ~~v~~~~~~~~~-------~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~------~~~~ 163 (512)
..++.+.... ......+++|+||+.+... ....+.+....|++||+||||++.+ ..|+
T Consensus 226 --~~i~~~~~~~~~~~~~~~pf~~~~~vI~S~~~l~~~-------~~~~~~l~~~~wdlvIvDEAH~lk~~~~~~s~~y~ 296 (956)
T PRK04914 226 --FSLFDEERYAEAQHDADNPFETEQLVICSLDFLRRN-------KQRLEQALAAEWDLLVVDEAHHLVWSEEAPSREYQ 296 (956)
T ss_pred --eEEEcCcchhhhcccccCccccCcEEEEEHHHhhhC-------HHHHHHHhhcCCCEEEEechhhhccCCCCcCHHHH
Confidence 3444443211 1123467999999999753 1234455567999999999999972 2344
Q ss_pred HHHHhc-ccceEEEEcccCCCCcchH-hhhHhhhCCceeee---------------------------------------
Q 010367 164 KVISLT-KSHCKLGLTATLVREDERI-TDLNFLIGPKLYEA--------------------------------------- 202 (512)
Q Consensus 164 ~~l~~~-~~~~~l~LTATp~~~~~~~-~~l~~l~gp~~~~~--------------------------------------- 202 (512)
.+.... +.+++|+|||||.+++... ..+..++.|..+..
T Consensus 297 ~v~~La~~~~~~LLLTATP~q~~~~e~falL~lLdP~~f~~~~~F~~e~~~~~~~a~~v~~l~~~~~~~~~~~~~l~~ll 376 (956)
T PRK04914 297 VVEQLAEVIPGVLLLTATPEQLGQESHFARLRLLDPDRFHDYEAFVEEQQQYRPVADAVQALLAGEKLSDDALNALGELL 376 (956)
T ss_pred HHHHHhhccCCEEEEEcCcccCCcHHHHHhhhhhCCCcCCCHHHHHHHHHhhHHHHHHHHHHhcCCcCCHHHHHHHHHHh
Confidence 332221 3568999999999754331 12222333322100
Q ss_pred ---cHH------------------HHHh-----CC--------------CcccceeEEEEcCCCHHHHHHHHHhhc-hHH
Q 010367 203 ---NWL------------------DLVK-----GG--------------FIANVQCAEVWCPMTKEFFSEYLKKEN-SKK 241 (512)
Q Consensus 203 ---~~~------------------~l~~-----~~--------------~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~~ 241 (512)
... +++. .| -........+..+++.++ ........ ...
T Consensus 377 ~~~~~~~l~~~~~~~~~~~~~~~~~~i~~L~d~hg~~rvm~RntR~~v~~fp~R~~~~~~l~~~~~y-~~~~~~~~~~~~ 455 (956)
T PRK04914 377 GEQDIEPLLQAANSDSEEAQAARQELISELLDRHGTGRVLFRNTRAAVKGFPKRELHPIPLPLPEQY-QTAIKVSLEARA 455 (956)
T ss_pred cccchhHHHhhhcccccccHHHHHHHHHHHHhhcCcceEEEeccHHhhcCCCcCceeEeecCCCHHH-HHHHHHhHHHHH
Confidence 000 0000 00 011222334445554433 22211100 000
Q ss_pred H------HHH--------hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC------CCceeCCCCHHH
Q 010367 242 K------QAL--------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVE 301 (512)
Q Consensus 242 ~------~~~--------~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~------~~~i~g~~~~~e 301 (512)
+ ... ......|+..+..+++.+ .+.|+||||+++..+..+++.|. +..+||++++.+
T Consensus 456 ~~~l~pe~~~~~~~~~~~~~~~d~Ki~~L~~~L~~~---~~~KvLVF~~~~~t~~~L~~~L~~~~Gi~~~~ihG~~s~~e 532 (956)
T PRK04914 456 RDMLYPEQIYQEFEDNATWWNFDPRVEWLIDFLKSH---RSEKVLVICAKAATALQLEQALREREGIRAAVFHEGMSIIE 532 (956)
T ss_pred HhhcCHHHHHHHHhhhhhccccCHHHHHHHHHHHhc---CCCeEEEEeCcHHHHHHHHHHHhhccCeeEEEEECCCCHHH
Confidence 0 000 111224666666666544 37899999999999999999992 345999999999
Q ss_pred HHHHHHHhhCCC-CccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEE
Q 010367 302 RTKILQAFKCSR-DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYS 380 (512)
Q Consensus 302 R~~il~~F~~~~-~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~ 380 (512)
|.++++.|++++ ..+|||||.++++|+|++.+++||+++.|| ||..|.||+||++|+| +...+.+|.
T Consensus 533 R~~~~~~F~~~~~~~~VLIsTdvgseGlNlq~a~~VInfDlP~-nP~~~eQRIGR~~RiG-----------Q~~~V~i~~ 600 (956)
T PRK04914 533 RDRAAAYFADEEDGAQVLLCSEIGSEGRNFQFASHLVLFDLPF-NPDLLEQRIGRLDRIG-----------QKHDIQIHV 600 (956)
T ss_pred HHHHHHHHhcCCCCccEEEechhhccCCCcccccEEEEecCCC-CHHHHHHHhcccccCC-----------CCceEEEEE
Confidence 999999999862 699999999999999999999999999988 9999999999999999 555799999
Q ss_pred EEeCCcHhhHHHHHHHH
Q 010367 381 LVSTDTQEMFYSTKRQQ 397 (512)
Q Consensus 381 lv~~~t~e~~~~~~r~~ 397 (512)
++.++|+++.+.+.-.+
T Consensus 601 ~~~~~t~~e~i~~~~~~ 617 (956)
T PRK04914 601 PYLEGTAQERLFRWYHE 617 (956)
T ss_pred ccCCCCHHHHHHHHHhh
Confidence 99999999877654433
No 14
>KOG0390 consensus DNA repair protein, SNF2 family [Replication, recombination and repair]
Probab=100.00 E-value=8e-37 Score=322.29 Aligned_cols=367 Identities=20% Similarity=0.227 Sum_probs=259.3
Q ss_pred CCCCCCCCcHHHHHHHHHHHhC---C----CCcceEEEcCCCCcHHHHHHHHHHhc-----C-----CCEEEEEcChhhH
Q 010367 19 ELKPHAQPRPYQEKSLSKMFGN---G----RARSGIIVLPCGAGKSLVGVSAACRI-----K-----KSCLCLATNAVSV 81 (512)
Q Consensus 19 ~l~~~~~Lr~yQ~~al~~~~~~---~----~~~~~il~~~tG~GKTl~~i~~i~~~-----~-----~~~Lvl~P~~~L~ 81 (512)
++.....|||||+++++.++.+ . ...+||+++.+|+|||++.++++..+ . .+.|||||.. |+
T Consensus 232 dP~l~~~LrPHQ~EG~~FL~knl~g~~~~~~~~GCImAd~~GlGKTlq~IsflwtlLrq~P~~~~~~~k~lVV~P~s-Lv 310 (776)
T KOG0390|consen 232 DPLLKKILRPHQREGFEFLYKNLAGLIRPKNSGGCIMADEPGLGKTLQCISFIWTLLRQFPQAKPLINKPLVVAPSS-LV 310 (776)
T ss_pred cccHhhhcCchHHHHHHHHHhhhhcccccCCCCceEeeCCCCcchHHHHHHHHHHHHHhCcCccccccccEEEccHH-HH
Confidence 3444578999999999998653 1 34589999999999999999999654 2 5799999966 79
Q ss_pred HHHHHHHHHhhCCCCCcEEEEcCCcccc------------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEE
Q 010367 82 DQWAFQFKLWSTIQDDQICRFTSDSKER------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLL 149 (512)
Q Consensus 82 ~Qw~~~~~~~~~~~~~~v~~~~~~~~~~------------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lv 149 (512)
.+|++||.+|.+........+.+..++. ..-...|.+.+|+++.. ..+.+....++++
T Consensus 311 ~nWkkEF~KWl~~~~i~~l~~~~~~~~~w~~~~sil~~~~~~~~~~vli~sye~~~~----------~~~~il~~~~glL 380 (776)
T KOG0390|consen 311 NNWKKEFGKWLGNHRINPLDFYSTKKSSWIKLKSILFLGYKQFTTPVLIISYETASD----------YCRKILLIRPGLL 380 (776)
T ss_pred HHHHHHHHHhccccccceeeeecccchhhhhhHHHHHhhhhheeEEEEeccHHHHHH----------HHHHHhcCCCCeE
Confidence 9999999999764344555566655530 11345688888988753 3566667899999
Q ss_pred EEcCCCCCCch--HHHHHHHhcccceEEEEcccCCCCcchH-hhhHhhhCCceeee----------------c-------
Q 010367 150 LMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGPKLYEA----------------N------- 203 (512)
Q Consensus 150 IiDEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l~~l~gp~~~~~----------------~------- 203 (512)
|+||+|+..+. .+.+++..++.+++|+|||||.+||-.+ ..+..+..|..... .
T Consensus 381 VcDEGHrlkN~~s~~~kaL~~l~t~rRVLLSGTp~QNdl~EyFnlL~fvrP~~Lgs~~sf~k~~~~~i~~~~~~~~s~e~ 460 (776)
T KOG0390|consen 381 VCDEGHRLKNSDSLTLKALSSLKTPRRVLLTGTPIQNDLKEYFNLLDFVRPGFLGSISSFKKKFEIPILRGRDADASEED 460 (776)
T ss_pred EECCCCCccchhhHHHHHHHhcCCCceEEeeCCcccccHHHHHHHHhhcChhhccchHHHHHHhhcccccccCCCcchhh
Confidence 99999999976 6677888899999999999999988553 24444555532111 0
Q ss_pred ---------HHHHHh-----------CCCcccceeEEEEcCCCHHHHHHHHHhhch--HH-------------H------
Q 010367 204 ---------WLDLVK-----------GGFIANVQCAEVWCPMTKEFFSEYLKKENS--KK-------------K------ 242 (512)
Q Consensus 204 ---------~~~l~~-----------~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~--~~-------------~------ 242 (512)
+.+++. ..++.......+.|..++.+...|-+-... .. .
T Consensus 461 ~~~~~rl~eL~~~t~~fi~rrt~~il~k~LP~k~e~vv~~n~t~~Q~~~~~~l~~~~~~~~~~~~~l~~~~~L~k~cnhP 540 (776)
T KOG0390|consen 461 REREERLQELRELTNKFILRRTGDILLKYLPGKYEYVVFCNPTPIQKELYKKLLDSMKMRTLKGYALELITKLKKLCNHP 540 (776)
T ss_pred hhhHHHHHHHHHHHHhheeecccchhhhhCCCceeEEEEeCCcHHHHHHHHHHHHHHHhhhhhcchhhHHHHHHHHhcCH
Confidence 111111 135555666677777765543333211111 00 0
Q ss_pred HHHh--------------------------hc---CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---CC
Q 010367 243 QALY--------------------------VM---NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---RK 290 (512)
Q Consensus 243 ~~~~--------------------------~~---~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~~ 290 (512)
.++. .. -..|+..+..++.......-.++.+.++.+..++.+.... +.
T Consensus 541 ~L~~~~~~~~~e~~~~~~~~~~~~~~~~~~~~~~~ks~kl~~L~~ll~~~~ek~~~~~v~Isny~~tldl~e~~~~~~g~ 620 (776)
T KOG0390|consen 541 SLLLLCEKTEKEKAFKNPALLLDPGKLKLDAGDGSKSGKLLVLVFLLEVIREKLLVKSVLISNYTQTLDLFEQLCRWRGY 620 (776)
T ss_pred HhhcccccccccccccChHhhhcccccccccccchhhhHHHHHHHHHHHHhhhcceEEEEeccHHHHHHHHHHHHhhcCc
Confidence 0000 00 1246677777774444234456666667777666666555 33
Q ss_pred --CceeCCCCHHHHHHHHHHhhCCCCc-cEEEE-eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCcccc
Q 010367 291 --PMIYGATSHVERTKILQAFKCSRDL-NTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDR 366 (512)
Q Consensus 291 --~~i~g~~~~~eR~~il~~F~~~~~~-~vlv~-t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~ 366 (512)
..++|+++..+|+.+++.|++.+.. .|+++ |+|+|+||||-+|+.||++|++| ||....|+++|+.|.|
T Consensus 621 ~~~rLdG~~~~~qRq~~vd~FN~p~~~~~vfLlSsKAgg~GinLiGAsRlil~D~dW-NPa~d~QAmaR~~RdG------ 693 (776)
T KOG0390|consen 621 EVLRLDGKTSIKQRQKLVDTFNDPESPSFVFLLSSKAGGEGLNLIGASRLILFDPDW-NPAVDQQAMARAWRDG------ 693 (776)
T ss_pred eEEEEcCCCchHHHHHHHHhccCCCCCceEEEEecccccCceeecccceEEEeCCCC-CchhHHHHHHHhccCC------
Confidence 3589999999999999999997333 56555 79999999999999999999998 9999999999999999
Q ss_pred ccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHHhcCCceEEeeC
Q 010367 367 MAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITS 411 (512)
Q Consensus 367 ~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~~i~~ 411 (512)
|.+.+++|+|++.+|+|+.+.+++ ...++.+--++..
T Consensus 694 -----QKk~v~iYrLlatGtiEEk~~qrq---~~K~~lS~~v~~~ 730 (776)
T KOG0390|consen 694 -----QKKPVYIYRLLATGTIEEKIYQRQ---THKEGLSSMVFDE 730 (776)
T ss_pred -----CcceEEEEEeecCCCchHHHHHHH---HHhhhhhheEEec
Confidence 677899999999999999877544 3445555555544
No 15
>PTZ00110 helicase; Provisional
Probab=100.00 E-value=5e-37 Score=326.57 Aligned_cols=320 Identities=19% Similarity=0.212 Sum_probs=221.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-hc----------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
.+|+|+|.++++.++.+. +.|+++|||+|||++++.++. .+ +..+|||||+++|+.|+.+++.+|.
T Consensus 151 ~~pt~iQ~~aip~~l~G~---dvI~~ApTGSGKTlaylLP~l~~i~~~~~~~~~~gp~~LIL~PTreLa~Qi~~~~~~~~ 227 (545)
T PTZ00110 151 TEPTPIQVQGWPIALSGR---DMIGIAETGSGKTLAFLLPAIVHINAQPLLRYGDGPIVLVLAPTRELAEQIREQCNKFG 227 (545)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccccCCCCcEEEEECChHHHHHHHHHHHHHHh
Confidence 469999999999988765 999999999999999876553 21 1248999999999999999999986
Q ss_pred CCCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----H
Q 010367 93 TIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----R 163 (512)
Q Consensus 93 ~~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~----~ 163 (512)
......+....++... .+...++|+|+||+.|.....+. .+....+.+||+||||++....| .
T Consensus 228 ~~~~i~~~~~~gg~~~~~q~~~l~~~~~IlVaTPgrL~d~l~~~--------~~~l~~v~~lViDEAd~mld~gf~~~i~ 299 (545)
T PTZ00110 228 ASSKIRNTVAYGGVPKRGQIYALRRGVEILIACPGRLIDFLESN--------VTNLRRVTYLVLDEADRMLDMGFEPQIR 299 (545)
T ss_pred cccCccEEEEeCCCCHHHHHHHHHcCCCEEEECHHHHHHHHHcC--------CCChhhCcEEEeehHHhhhhcchHHHHH
Confidence 5544455555554321 12356889999999886542211 01114678999999999987644 4
Q ss_pred HHHHhcc-cceEEEEcccCCCCcchHhhhHhhhC--CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH
Q 010367 164 KVISLTK-SHCKLGLTATLVREDERITDLNFLIG--PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (512)
Q Consensus 164 ~~l~~~~-~~~~l~LTATp~~~~~~~~~l~~l~g--p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (512)
+++..+. ..+.+++|||+..+.... ...++. |........++.. ...+......+
T Consensus 300 ~il~~~~~~~q~l~~SAT~p~~v~~l--~~~l~~~~~v~i~vg~~~l~~---~~~i~q~~~~~----------------- 357 (545)
T PTZ00110 300 KIVSQIRPDRQTLMWSATWPKEVQSL--ARDLCKEEPVHVNVGSLDLTA---CHNIKQEVFVV----------------- 357 (545)
T ss_pred HHHHhCCCCCeEEEEEeCCCHHHHHH--HHHHhccCCEEEEECCCcccc---CCCeeEEEEEE-----------------
Confidence 4555543 346899999986432221 122222 2221111111000 00111011111
Q ss_pred HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCc
Q 010367 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDL 315 (512)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~ 315 (512)
....|...+..++.... ..+.++||||+++..++.++..|. +..+||++++.+|.++++.|+.+ ++
T Consensus 358 -------~~~~k~~~L~~ll~~~~-~~~~k~LIF~~t~~~a~~l~~~L~~~g~~~~~ihg~~~~~eR~~il~~F~~G-~~ 428 (545)
T PTZ00110 358 -------EEHEKRGKLKMLLQRIM-RDGDKILIFVETKKGADFLTKELRLDGWPALCIHGDKKQEERTWVLNEFKTG-KS 428 (545)
T ss_pred -------echhHHHHHHHHHHHhc-ccCCeEEEEecChHHHHHHHHHHHHcCCcEEEEECCCcHHHHHHHHHHHhcC-CC
Confidence 11123344555555443 357899999999999999999994 34699999999999999999997 99
Q ss_pred cEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHH
Q 010367 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (512)
Q Consensus 316 ~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r 395 (512)
+|||||+++++|||+|++++||+++.|. +...|+||+||++|.|. ....|.+++.+. ..++...
T Consensus 429 ~ILVaTdv~~rGIDi~~v~~VI~~d~P~-s~~~yvqRiGRtGR~G~-------------~G~ai~~~~~~~--~~~~~~l 492 (545)
T PTZ00110 429 PIMIATDVASRGLDVKDVKYVINFDFPN-QIEDYVHRIGRTGRAGA-------------KGASYTFLTPDK--YRLARDL 492 (545)
T ss_pred cEEEEcchhhcCCCcccCCEEEEeCCCC-CHHHHHHHhcccccCCC-------------CceEEEEECcch--HHHHHHH
Confidence 9999999999999999999999998886 99999999999999884 244566776653 3334444
Q ss_pred HHHHHh
Q 010367 396 QQFLID 401 (512)
Q Consensus 396 ~~~l~~ 401 (512)
.+.|.+
T Consensus 493 ~~~l~~ 498 (545)
T PTZ00110 493 VKVLRE 498 (545)
T ss_pred HHHHHH
Confidence 444544
No 16
>KOG0330 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=2.2e-36 Score=288.80 Aligned_cols=318 Identities=17% Similarity=0.189 Sum_probs=233.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--C----CCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--K----KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.+|.+.|.++++..+++. ++|..++||+|||.+++.++... . -.+||++|+++|+.|..+.|+.+...-..
T Consensus 82 ~~PT~IQ~~aiP~~L~g~---dvIglAeTGSGKT~afaLPIl~~LL~~p~~~~~lVLtPtRELA~QI~e~fe~Lg~~igl 158 (476)
T KOG0330|consen 82 KKPTKIQSEAIPVALGGR---DVIGLAETGSGKTGAFALPILQRLLQEPKLFFALVLTPTRELAQQIAEQFEALGSGIGL 158 (476)
T ss_pred CCCchhhhhhcchhhCCC---cEEEEeccCCCchhhhHHHHHHHHHcCCCCceEEEecCcHHHHHHHHHHHHHhccccCe
Confidence 578999999999999876 99999999999999988877432 2 25999999999999999999999665666
Q ss_pred cEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHH----h
Q 010367 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS----L 168 (512)
Q Consensus 98 ~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~----~ 168 (512)
.+.++.|+.... +...++|+|+||+.|...... ...++.....++|+|||+++.+..|...+. .
T Consensus 159 r~~~lvGG~~m~~q~~~L~kkPhilVaTPGrL~dhl~~-------Tkgf~le~lk~LVlDEADrlLd~dF~~~ld~ILk~ 231 (476)
T KOG0330|consen 159 RVAVLVGGMDMMLQANQLSKKPHILVATPGRLWDHLEN-------TKGFSLEQLKFLVLDEADRLLDMDFEEELDYILKV 231 (476)
T ss_pred EEEEEecCchHHHHHHHhhcCCCEEEeCcHHHHHHHHh-------ccCccHHHhHHHhhchHHhhhhhhhHHHHHHHHHh
Confidence 788888875432 357799999999998764221 122223456789999999999987765544 4
Q ss_pred ccc-ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 169 TKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 169 ~~~-~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
++. ++.+++|||...+..+... ..+-.|..... ...++. -...++..+..
T Consensus 232 ip~erqt~LfsATMt~kv~kL~r-asl~~p~~v~~----------------s~ky~t------------v~~lkQ~ylfv 282 (476)
T KOG0330|consen 232 IPRERQTFLFSATMTKKVRKLQR-ASLDNPVKVAV----------------SSKYQT------------VDHLKQTYLFV 282 (476)
T ss_pred cCccceEEEEEeecchhhHHHHh-hccCCCeEEec----------------cchhcc------------hHHhhhheEec
Confidence 443 4679999999865554220 11111211110 000000 01111112223
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
....|-..+.+|++... |..+||||++....+.++-.| + ..-+||+|++..|...++.|+++ ..+||+||+
T Consensus 283 ~~k~K~~yLV~ll~e~~---g~s~iVF~~t~~tt~~la~~L~~lg~~a~~LhGqmsq~~Rlg~l~~Fk~~-~r~iLv~TD 358 (476)
T KOG0330|consen 283 PGKDKDTYLVYLLNELA---GNSVIVFCNTCNTTRFLALLLRNLGFQAIPLHGQMSQSKRLGALNKFKAG-ARSILVCTD 358 (476)
T ss_pred cccccchhHHHHHHhhc---CCcEEEEEeccchHHHHHHHHHhcCcceecccchhhHHHHHHHHHHHhcc-CCcEEEecc
Confidence 33345567788887665 789999999988888777776 3 34599999999999999999997 999999999
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHH
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (512)
++++|+|+|.+++||+||.|. +..+|+||+||++|.|. .+...++|+. .|....++-...+-
T Consensus 359 VaSRGLDip~Vd~VVNyDiP~-~skDYIHRvGRtaRaGr-------------sG~~ItlVtq--yDve~~qrIE~~~g 420 (476)
T KOG0330|consen 359 VASRGLDIPHVDVVVNYDIPT-HSKDYIHRVGRTARAGR-------------SGKAITLVTQ--YDVELVQRIEHALG 420 (476)
T ss_pred hhcccCCCCCceEEEecCCCC-cHHHHHHHcccccccCC-------------CcceEEEEeh--hhhHHHHHHHHHHh
Confidence 999999999999999999998 99999999999999995 4667789998 44444444444443
No 17
>PRK04837 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=8.7e-37 Score=317.52 Aligned_cols=293 Identities=16% Similarity=0.166 Sum_probs=209.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c------------CCCEEEEEcChhhHHHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~------------~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
..+.|.|.++++.++.+. +.++.+|||+|||++++.++.. + +.++|||+|+++|+.|+.+++..
T Consensus 29 ~~pt~iQ~~aip~il~g~---dvi~~ApTGsGKTla~llp~l~~l~~~~~~~~~~~~~~~~lil~PtreLa~Qi~~~~~~ 105 (423)
T PRK04837 29 HNCTPIQALALPLTLAGR---DVAGQAQTGTGKTMAFLTATFHYLLSHPAPEDRKVNQPRALIMAPTRELAVQIHADAEP 105 (423)
T ss_pred CCCCHHHHHHHHHHhCCC---cEEEECCCCchHHHHHHHHHHHHHHhcccccccccCCceEEEECCcHHHHHHHHHHHHH
Confidence 478999999999988765 9999999999999998777632 1 13699999999999999999988
Q ss_pred hhCCCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH--
Q 010367 91 WSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (512)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~-- 163 (512)
+.......+..+.|+... .+...++|+|+||+.+.....+ ..+....+.++|+||||++....|.
T Consensus 106 l~~~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~TP~~l~~~l~~--------~~~~l~~v~~lViDEad~l~~~~f~~~ 177 (423)
T PRK04837 106 LAQATGLKLGLAYGGDGYDKQLKVLESGVDILIGTTGRLIDYAKQ--------NHINLGAIQVVVLDEADRMFDLGFIKD 177 (423)
T ss_pred HhccCCceEEEEECCCCHHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCcccccccEEEEecHHHHhhcccHHH
Confidence 865555667777765431 2345679999999988654221 1122357889999999999865443
Q ss_pred --HHHHhccc---ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhc
Q 010367 164 --KVISLTKS---HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (512)
Q Consensus 164 --~~l~~~~~---~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (512)
.++..++. ...+++|||+........ ...+..|.......... ....+.....+
T Consensus 178 i~~i~~~~~~~~~~~~~l~SAT~~~~~~~~~-~~~~~~p~~i~v~~~~~----~~~~i~~~~~~---------------- 236 (423)
T PRK04837 178 IRWLFRRMPPANQRLNMLFSATLSYRVRELA-FEHMNNPEYVEVEPEQK----TGHRIKEELFY---------------- 236 (423)
T ss_pred HHHHHHhCCCccceeEEEEeccCCHHHHHHH-HHHCCCCEEEEEcCCCc----CCCceeEEEEe----------------
Confidence 34444432 346899999863222110 11122232222111000 00000000011
Q ss_pred hHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCC
Q 010367 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSR 313 (512)
Q Consensus 239 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~ 313 (512)
.....|...+..++... ...++||||+++..++.++..|. +..+||++++.+|.++++.|+++
T Consensus 237 --------~~~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~g~~v~~lhg~~~~~~R~~~l~~F~~g- 304 (423)
T PRK04837 237 --------PSNEEKMRLLQTLIEEE---WPDRAIIFANTKHRCEEIWGHLAADGHRVGLLTGDVAQKKRLRILEEFTRG- 304 (423)
T ss_pred --------CCHHHHHHHHHHHHHhc---CCCeEEEEECCHHHHHHHHHHHHhCCCcEEEecCCCChhHHHHHHHHHHcC-
Confidence 11123444555565433 36799999999999999999983 45799999999999999999998
Q ss_pred CccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 314 ~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+++|||+|+++++|||+|++++||+++.|. |...|+||+||+||.|.
T Consensus 305 ~~~vLVaTdv~~rGiDip~v~~VI~~d~P~-s~~~yiqR~GR~gR~G~ 351 (423)
T PRK04837 305 DLDILVATDVAARGLHIPAVTHVFNYDLPD-DCEDYVHRIGRTGRAGA 351 (423)
T ss_pred CCcEEEEechhhcCCCccccCEEEEeCCCC-chhheEeccccccCCCC
Confidence 999999999999999999999999998887 99999999999999984
No 18
>PRK10590 ATP-dependent RNA helicase RhlE; Provisional
Probab=100.00 E-value=3.7e-36 Score=315.02 Aligned_cols=292 Identities=18% Similarity=0.204 Sum_probs=208.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-C-----------CCEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K-----------KSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~-----------~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..|+|+|.++++.++.+. +.++.+|||+|||++++.++... . .++|||||+++|+.||.+.+..+
T Consensus 22 ~~pt~iQ~~ai~~il~g~---dvlv~apTGsGKTla~~lpil~~l~~~~~~~~~~~~~~aLil~PtreLa~Qi~~~~~~~ 98 (456)
T PRK10590 22 REPTPIQQQAIPAVLEGR---DLMASAQTGTGKTAGFTLPLLQHLITRQPHAKGRRPVRALILTPTRELAAQIGENVRDY 98 (456)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHhhhcccccccCCCceEEEEeCcHHHHHHHHHHHHHH
Confidence 479999999999988764 89999999999999987776432 0 25999999999999999999998
Q ss_pred hCCCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----
Q 010367 92 STIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---- 162 (512)
Q Consensus 92 ~~~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~---- 162 (512)
.......+..+.++... .+...++|+|+|++.|.....+ ..+....++++|+||||++....|
T Consensus 99 ~~~~~~~~~~~~gg~~~~~~~~~l~~~~~IiV~TP~rL~~~~~~--------~~~~l~~v~~lViDEah~ll~~~~~~~i 170 (456)
T PRK10590 99 SKYLNIRSLVVFGGVSINPQMMKLRGGVDVLVATPGRLLDLEHQ--------NAVKLDQVEILVLDEADRMLDMGFIHDI 170 (456)
T ss_pred hccCCCEEEEEECCcCHHHHHHHHcCCCcEEEEChHHHHHHHHc--------CCcccccceEEEeecHHHHhccccHHHH
Confidence 76555566666665331 2346789999999988654211 111225688999999999986543
Q ss_pred HHHHHhccc-ceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH
Q 010367 163 RKVISLTKS-HCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (512)
Q Consensus 163 ~~~l~~~~~-~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (512)
..++..+.. .+.+++|||+....... ...++ .|.......... ....+......+ ..
T Consensus 171 ~~il~~l~~~~q~l~~SAT~~~~~~~l--~~~~~~~~~~i~~~~~~~----~~~~i~~~~~~~--~~------------- 229 (456)
T PRK10590 171 RRVLAKLPAKRQNLLFSATFSDDIKAL--AEKLLHNPLEIEVARRNT----ASEQVTQHVHFV--DK------------- 229 (456)
T ss_pred HHHHHhCCccCeEEEEeCCCcHHHHHH--HHHHcCCCeEEEEecccc----cccceeEEEEEc--CH-------------
Confidence 455555543 46899999986432111 11222 222221111000 000111111111 00
Q ss_pred HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCc
Q 010367 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDL 315 (512)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~ 315 (512)
..|..++..++.. ....++||||+++..++.+++.|. +..+||++++.+|.++++.|+++ ++
T Consensus 230 ---------~~k~~~l~~l~~~---~~~~~~lVF~~t~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~ 296 (456)
T PRK10590 230 ---------KRKRELLSQMIGK---GNWQQVLVFTRTKHGANHLAEQLNKDGIRSAAIHGNKSQGARTRALADFKSG-DI 296 (456)
T ss_pred ---------HHHHHHHHHHHHc---CCCCcEEEEcCcHHHHHHHHHHHHHCCCCEEEEECCCCHHHHHHHHHHHHcC-CC
Confidence 1122344444433 235789999999999999999983 35699999999999999999997 99
Q ss_pred cEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 316 ~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|||||+++++|||+|++++||+++.|. ++..|+||+||++|.|.
T Consensus 297 ~iLVaTdv~~rGiDip~v~~VI~~~~P~-~~~~yvqR~GRaGR~g~ 341 (456)
T PRK10590 297 RVLVATDIAARGLDIEELPHVVNYELPN-VPEDYVHRIGRTGRAAA 341 (456)
T ss_pred cEEEEccHHhcCCCcccCCEEEEeCCCC-CHHHhhhhccccccCCC
Confidence 9999999999999999999999998876 99999999999999884
No 19
>TIGR00614 recQ_fam ATP-dependent DNA helicase, RecQ family. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=100.00 E-value=4.8e-35 Score=307.55 Aligned_cols=286 Identities=17% Similarity=0.190 Sum_probs=206.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
..+||+|.++++.++.+. ++++++|||+|||++++.++....+.+|||+|+++|+.|+.+.+..+ ++ .+..++
T Consensus 10 ~~~r~~Q~~ai~~~l~g~---dvlv~apTGsGKTl~y~lp~l~~~~~~lVi~P~~~L~~dq~~~l~~~-gi---~~~~l~ 82 (470)
T TIGR00614 10 SSFRPVQLEVINAVLLGR---DCFVVMPTGGGKSLCYQLPALCSDGITLVISPLISLMEDQVLQLKAS-GI---PATFLN 82 (470)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHhHHHHHHHHHcCCcEEEEecHHHHHHHHHHHHHHc-CC---cEEEEe
Confidence 479999999999999875 89999999999999999888888889999999999999999999875 43 345555
Q ss_pred CCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHH-hcCCccEEEEcCCCCCCch------HHHH---
Q 010367 104 SDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH------MFRK--- 164 (512)
Q Consensus 104 ~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~lvIiDEaH~~~~~------~~~~--- 164 (512)
++.... ..+..+|+++||+.+.... .+...+ ....++++||||||++... .+..
T Consensus 83 ~~~~~~~~~~i~~~~~~~~~~il~~TPe~l~~~~-------~~~~~l~~~~~i~~iViDEaH~i~~~g~~fr~~~~~l~~ 155 (470)
T TIGR00614 83 SSQSKEQQKNVLTDLKDGKIKLLYVTPEKCSASN-------RLLQTLEERKGITLIAVDEAHCISQWGHDFRPDYKALGS 155 (470)
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHcCch-------hHHHHHHhcCCcCEEEEeCCcccCccccccHHHHHHHHH
Confidence 543321 1356789999999987531 123333 3478899999999998742 2222
Q ss_pred HHHhcccceEEEEcccCCCCcchHhhhHhhh---CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHH
Q 010367 165 VISLTKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (512)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~---gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (512)
+...++...+++||||+...... ++...+ .|..+..+ +-.+.....+... .
T Consensus 156 l~~~~~~~~~l~lTAT~~~~~~~--di~~~l~l~~~~~~~~s--------~~r~nl~~~v~~~-~--------------- 209 (470)
T TIGR00614 156 LKQKFPNVPIMALTATASPSVRE--DILRQLNLKNPQIFCTS--------FDRPNLYYEVRRK-T--------------- 209 (470)
T ss_pred HHHHcCCCceEEEecCCCHHHHH--HHHHHcCCCCCcEEeCC--------CCCCCcEEEEEeC-C---------------
Confidence 23344556789999999753221 222221 23322211 1011001111100 0
Q ss_pred HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCcc
Q 010367 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLN 316 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~ 316 (512)
...+..+..++... ..+.++||||+++..++.++..| .+..+||++++.+|.++++.|+.+ +++
T Consensus 210 --------~~~~~~l~~~l~~~--~~~~~~IIF~~s~~~~e~la~~L~~~g~~~~~~H~~l~~~eR~~i~~~F~~g-~~~ 278 (470)
T TIGR00614 210 --------PKILEDLLRFIRKE--FKGKSGIIYCPSRKKSEQVTASLQNLGIAAGAYHAGLEISARDDVHHKFQRD-EIQ 278 (470)
T ss_pred --------ccHHHHHHHHHHHh--cCCCceEEEECcHHHHHHHHHHHHhcCCCeeEeeCCCCHHHHHHHHHHHHcC-CCc
Confidence 01111122222211 34777899999999999999998 345799999999999999999997 999
Q ss_pred EEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 317 vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|||+|.++++|||+|++++||+++.|. |...|+|++||+||.|.
T Consensus 279 vLVaT~~~~~GID~p~V~~VI~~~~P~-s~~~y~Qr~GRaGR~G~ 322 (470)
T TIGR00614 279 VVVATVAFGMGINKPDVRFVIHYSLPK-SMESYYQESGRAGRDGL 322 (470)
T ss_pred EEEEechhhccCCcccceEEEEeCCCC-CHHHHHhhhcCcCCCCC
Confidence 999999999999999999999998876 99999999999999985
No 20
>PRK13766 Hef nuclease; Provisional
Probab=100.00 E-value=8.2e-35 Score=324.62 Aligned_cols=343 Identities=21% Similarity=0.286 Sum_probs=235.8
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
..+++|+||.+.+...+.+ ++++++|||+|||++++.++... ++++|||||+++|+.||.+.+..+++.++.
T Consensus 12 ~~~~~r~yQ~~~~~~~l~~----n~lv~~ptG~GKT~~a~~~i~~~l~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~~~~~~ 87 (773)
T PRK13766 12 NTIEARLYQQLLAATALKK----NTLVVLPTGLGKTAIALLVIAERLHKKGGKVLILAPTKPLVEQHAEFFRKFLNIPEE 87 (773)
T ss_pred CcCCccHHHHHHHHHHhcC----CeEEEcCCCccHHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHHHHHHHHhCCCCc
Confidence 4578999999999988765 78999999999999988777543 579999999999999999999999887766
Q ss_pred cEEEEcCCccc----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHHHHHHh----
Q 010367 98 QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISL---- 168 (512)
Q Consensus 98 ~v~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~~~l~~---- 168 (512)
.+..++|+... ......+|+|+||+.+.+... ...+....|++||+||||++.+. .+..++..
T Consensus 88 ~v~~~~g~~~~~~r~~~~~~~~iiv~T~~~l~~~l~--------~~~~~~~~~~liVvDEaH~~~~~~~~~~i~~~~~~~ 159 (773)
T PRK13766 88 KIVVFTGEVSPEKRAELWEKAKVIVATPQVIENDLI--------AGRISLEDVSLLIFDEAHRAVGNYAYVYIAERYHED 159 (773)
T ss_pred eEEEEeCCCCHHHHHHHHhCCCEEEECHHHHHHHHH--------cCCCChhhCcEEEEECCccccccccHHHHHHHHHhc
Confidence 78888886442 123467899999998865321 11122357899999999998754 33333332
Q ss_pred cccceEEEEcccCCCCcchHhhh-HhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHH----------------
Q 010367 169 TKSHCKLGLTATLVREDERITDL-NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS---------------- 231 (512)
Q Consensus 169 ~~~~~~l~LTATp~~~~~~~~~l-~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~---------------- 231 (512)
.+.+++++|||||......+..+ ..+....+.-.+..+..-..++.+.....+.+++++....
T Consensus 160 ~~~~~il~lTaTP~~~~~~i~~~~~~L~i~~v~~~~~~~~~v~~~~~~~~v~~~~v~l~~~~~~i~~~l~~~~~~~l~~l 239 (773)
T PRK13766 160 AKNPLVLGLTASPGSDEEKIKEVCENLGIEHVEVRTEDDPDVKPYVHKVKIEWVRVELPEELKEIRDLLNEALKDRLKKL 239 (773)
T ss_pred CCCCEEEEEEcCCCCCHHHHHHHHHhCCceEEEEcCCCChhHHhhhccceeEEEEeCCcHHHHHHHHHHHHHHHHHHHHH
Confidence 23457999999998665443322 2221111111110000001122222333333333322100
Q ss_pred -----------------------------------------------------------------HHHHhhch-------
Q 010367 232 -----------------------------------------------------------------EYLKKENS------- 239 (512)
Q Consensus 232 -----------------------------------------------------------------~~l~~~~~------- 239 (512)
.|+.....
T Consensus 240 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~~~~~~~~y~~~l~~~~~~~~~ 319 (773)
T PRK13766 240 KELGVIVSISPDVSKKELLGLQKKLQQEIANDDSEGYEAISILAEAMKLRHAVELLETQGVEALRRYLERLREEARSSGG 319 (773)
T ss_pred HHCCCcccCCCCcCHHHHHHHHHHHHHHhhcCchHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHhhccccCC
Confidence 00000000
Q ss_pred -----------HHHHHH-----hhcCcchHHHHHHHHHHhh-hcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCC-
Q 010367 240 -----------KKKQAL-----YVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGA- 296 (512)
Q Consensus 240 -----------~~~~~~-----~~~~~~k~~~l~~ll~~~~-~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~- 296 (512)
.....+ ......|+..+..+++... ...+.++||||+++.+++.+.+.|. ...++|.
T Consensus 320 ~~~~~~l~~~~~~~~~~~~~~~~~~~~pK~~~L~~il~~~~~~~~~~kvlIF~~~~~t~~~L~~~L~~~~~~~~~~~g~~ 399 (773)
T PRK13766 320 SKASKRLVEDPRFRKAVRKAKELDIEHPKLEKLREIVKEQLGKNPDSRIIVFTQYRDTAEKIVDLLEKEGIKAVRFVGQA 399 (773)
T ss_pred cHHHHHHHhCHHHHHHHHHHHhcccCChHHHHHHHHHHHHHhcCCCCeEEEEeCcHHHHHHHHHHHHhCCCceEEEEccc
Confidence 000000 0112347777777775432 2467899999999999999999982 2346665
Q ss_pred -------CCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccC
Q 010367 297 -------TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAG 369 (512)
Q Consensus 297 -------~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~ 369 (512)
+++.+|.+++++|+.+ ++++||+|+++++|+|+|.+++||+|++++ |+..++||+||++|.++
T Consensus 400 ~~~~~~~~~~~~r~~~~~~F~~g-~~~vLvaT~~~~eGldi~~~~~VI~yd~~~-s~~r~iQR~GR~gR~~~-------- 469 (773)
T PRK13766 400 SKDGDKGMSQKEQIEILDKFRAG-EFNVLVSTSVAEEGLDIPSVDLVIFYEPVP-SEIRSIQRKGRTGRQEE-------- 469 (773)
T ss_pred cccccCCCCHHHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEeCCCC-CHHHHHHHhcccCcCCC--------
Confidence 8899999999999997 899999999999999999999999999887 99999999999999883
Q ss_pred CCCceeEEEEEEEeCCcHhhHHH
Q 010367 370 GKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 370 ~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
+.+|.++..+|.|+.+.
T Consensus 470 ------~~v~~l~~~~t~ee~~y 486 (773)
T PRK13766 470 ------GRVVVLIAKGTRDEAYY 486 (773)
T ss_pred ------CEEEEEEeCCChHHHHH
Confidence 45788999999988443
No 21
>PRK11776 ATP-dependent RNA helicase DbpA; Provisional
Probab=100.00 E-value=6.6e-36 Score=314.23 Aligned_cols=302 Identities=17% Similarity=0.180 Sum_probs=217.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhC-CCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWST-IQD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~-~~~ 96 (512)
.+|+|+|.+|++.++.+. +.++++|||+|||++++.++... ...+||+||+++|+.||.+++..+.. .+.
T Consensus 25 ~~~t~iQ~~ai~~~l~g~---dvi~~a~TGsGKT~a~~lpil~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~~~~~~~~ 101 (460)
T PRK11776 25 TEMTPIQAQSLPAILAGK---DVIAQAKTGSGKTAAFGLGLLQKLDVKRFRVQALVLCPTRELADQVAKEIRRLARFIPN 101 (460)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHhhhccCCceEEEEeCCHHHHHHHHHHHHHHHhhCCC
Confidence 469999999999998765 89999999999999987776442 12699999999999999999998753 234
Q ss_pred CcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----HHHHH
Q 010367 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVIS 167 (512)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~----~~~l~ 167 (512)
..+..+.|+... .+....+|+|+||+.+.....+. .+....++++|+||||++....| ..++.
T Consensus 102 ~~v~~~~Gg~~~~~~~~~l~~~~~IvV~Tp~rl~~~l~~~--------~~~l~~l~~lViDEad~~l~~g~~~~l~~i~~ 173 (460)
T PRK11776 102 IKVLTLCGGVPMGPQIDSLEHGAHIIVGTPGRILDHLRKG--------TLDLDALNTLVLDEADRMLDMGFQDAIDAIIR 173 (460)
T ss_pred cEEEEEECCCChHHHHHHhcCCCCEEEEChHHHHHHHHcC--------CccHHHCCEEEEECHHHHhCcCcHHHHHHHHH
Confidence 567777776432 23467899999999886543221 11125678999999999886544 44455
Q ss_pred hccc-ceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 168 LTKS-HCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 168 ~~~~-~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
.++. ...+++|||+...-... ...++ .|....... ......+....+.++
T Consensus 174 ~~~~~~q~ll~SAT~~~~~~~l--~~~~~~~~~~i~~~~-----~~~~~~i~~~~~~~~--------------------- 225 (460)
T PRK11776 174 QAPARRQTLLFSATYPEGIAAI--SQRFQRDPVEVKVES-----THDLPAIEQRFYEVS--------------------- 225 (460)
T ss_pred hCCcccEEEEEEecCcHHHHHH--HHHhcCCCEEEEECc-----CCCCCCeeEEEEEeC---------------------
Confidence 4443 46799999996432211 11122 222222111 001111111112211
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
+..|...+..++..+ .+.++||||+++..++.+++.| .+..+||++++.+|.++++.|+++ .++||||
T Consensus 226 ---~~~k~~~l~~ll~~~---~~~~~lVF~~t~~~~~~l~~~L~~~~~~v~~~hg~~~~~eR~~~l~~F~~g-~~~vLVa 298 (460)
T PRK11776 226 ---PDERLPALQRLLLHH---QPESCVVFCNTKKECQEVADALNAQGFSALALHGDLEQRDRDQVLVRFANR-SCSVLVA 298 (460)
T ss_pred ---cHHHHHHHHHHHHhc---CCCceEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 112345556666543 3678999999999999999998 345799999999999999999997 9999999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCC
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~ 385 (512)
|+++++|+|+|++++||+++.|. ++..|+||+||+||.|. .+..|.+++.+
T Consensus 299 Tdv~~rGiDi~~v~~VI~~d~p~-~~~~yiqR~GRtGR~g~-------------~G~ai~l~~~~ 349 (460)
T PRK11776 299 TDVAARGLDIKALEAVINYELAR-DPEVHVHRIGRTGRAGS-------------KGLALSLVAPE 349 (460)
T ss_pred ecccccccchhcCCeEEEecCCC-CHhHhhhhcccccCCCC-------------cceEEEEEchh
Confidence 99999999999999999998876 99999999999999884 24566677654
No 22
>PLN00206 DEAD-box ATP-dependent RNA helicase; Provisional
Probab=100.00 E-value=1.2e-35 Score=315.06 Aligned_cols=294 Identities=16% Similarity=0.163 Sum_probs=207.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-------------cCCCEEEEEcChhhHHHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-------------IKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-------------~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
..|+|+|.++++.++.+. +.++++|||+|||++++.++.. .+..+|||+|+++|+.|+.+.+..
T Consensus 142 ~~ptpiQ~~aip~il~g~---dviv~ApTGSGKTlayllPil~~l~~~~~~~~~~~~~~~aLIL~PTreLa~Qi~~~~~~ 218 (518)
T PLN00206 142 EFPTPIQMQAIPAALSGR---SLLVSADTGSGKTASFLVPIISRCCTIRSGHPSEQRNPLAMVLTPTRELCVQVEDQAKV 218 (518)
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEecCCCCccHHHHHHHHHHHHhhccccccccCCceEEEEeCCHHHHHHHHHHHHH
Confidence 479999999999998764 9999999999999998877632 123699999999999999999988
Q ss_pred hhCCCCCcEEEE-cCCccc----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH--
Q 010367 91 WSTIQDDQICRF-TSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (512)
Q Consensus 91 ~~~~~~~~v~~~-~~~~~~----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~-- 163 (512)
+....+..+..+ .|.... .+....+|+|+||+.|.....+. .+....+.+||+||||++....|.
T Consensus 219 l~~~~~~~~~~~~gG~~~~~q~~~l~~~~~IiV~TPgrL~~~l~~~--------~~~l~~v~~lViDEad~ml~~gf~~~ 290 (518)
T PLN00206 219 LGKGLPFKTALVVGGDAMPQQLYRIQQGVELIVGTPGRLIDLLSKH--------DIELDNVSVLVLDEVDCMLERGFRDQ 290 (518)
T ss_pred HhCCCCceEEEEECCcchHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CccchheeEEEeecHHHHhhcchHHH
Confidence 754333344444 443221 23456899999999886542221 111256789999999999866443
Q ss_pred --HHHHhcccceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH
Q 010367 164 --KVISLTKSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (512)
Q Consensus 164 --~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (512)
.++..++..+++++|||..+...... ..+.. +......... .....+....++++
T Consensus 291 i~~i~~~l~~~q~l~~SATl~~~v~~l~--~~~~~~~~~i~~~~~~----~~~~~v~q~~~~~~---------------- 348 (518)
T PLN00206 291 VMQIFQALSQPQVLLFSATVSPEVEKFA--SSLAKDIILISIGNPN----RPNKAVKQLAIWVE---------------- 348 (518)
T ss_pred HHHHHHhCCCCcEEEEEeeCCHHHHHHH--HHhCCCCEEEEeCCCC----CCCcceeEEEEecc----------------
Confidence 45556667789999999975332211 11111 1111111000 00001111122222
Q ss_pred HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC------CCceeCCCCHHHHHHHHHHhhCCCC
Q 010367 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKCSRD 314 (512)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~il~~F~~~~~ 314 (512)
...|...+..++.... ....++||||+++..++.++..|. +..+||++++.+|.++++.|+.| +
T Consensus 349 --------~~~k~~~l~~~l~~~~-~~~~~~iVFv~s~~~a~~l~~~L~~~~g~~~~~~Hg~~~~~eR~~il~~Fr~G-~ 418 (518)
T PLN00206 349 --------TKQKKQKLFDILKSKQ-HFKPPAVVFVSSRLGADLLANAITVVTGLKALSIHGEKSMKERREVMKSFLVG-E 418 (518)
T ss_pred --------chhHHHHHHHHHHhhc-ccCCCEEEEcCCchhHHHHHHHHhhccCcceEEeeCCCCHHHHHHHHHHHHCC-C
Confidence 1112233344444333 234589999999999999998873 34699999999999999999998 9
Q ss_pred ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 315 ~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|||+|+++++|||+|++++||+++.|. +...|+||+||+||.|.
T Consensus 419 ~~ILVaTdvl~rGiDip~v~~VI~~d~P~-s~~~yihRiGRaGR~g~ 464 (518)
T PLN00206 419 VPVIVATGVLGRGVDLLRVRQVIIFDMPN-TIKEYIHQIGRASRMGE 464 (518)
T ss_pred CCEEEEecHhhccCCcccCCEEEEeCCCC-CHHHHHHhccccccCCC
Confidence 99999999999999999999999998876 99999999999999984
No 23
>PRK11192 ATP-dependent RNA helicase SrmB; Provisional
Probab=100.00 E-value=6.7e-36 Score=312.18 Aligned_cols=293 Identities=20% Similarity=0.162 Sum_probs=210.3
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
.+|+|+|.+++..++.+. +.++++|||+|||++++.++... ..++||++|+++|+.|+.+.+..+..
T Consensus 22 ~~p~~iQ~~ai~~~~~g~---d~l~~apTGsGKT~~~~lp~l~~l~~~~~~~~~~~~~lil~Pt~eLa~Q~~~~~~~l~~ 98 (434)
T PRK11192 22 TRPTAIQAEAIPPALDGR---DVLGSAPTGTGKTAAFLLPALQHLLDFPRRKSGPPRILILTPTRELAMQVADQARELAK 98 (434)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCceEEEECCcHHHHHHHHHHHHHHHc
Confidence 468999999999999764 89999999999999987776432 24799999999999999999998876
Q ss_pred CCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHh
Q 010367 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~ 168 (512)
.....+..++|+... .+....+|+|+|++.|...... ..+....+++||+||||++....|...+..
T Consensus 99 ~~~~~v~~~~gg~~~~~~~~~l~~~~~IlV~Tp~rl~~~~~~--------~~~~~~~v~~lViDEah~~l~~~~~~~~~~ 170 (434)
T PRK11192 99 HTHLDIATITGGVAYMNHAEVFSENQDIVVATPGRLLQYIKE--------ENFDCRAVETLILDEADRMLDMGFAQDIET 170 (434)
T ss_pred cCCcEEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHc--------CCcCcccCCEEEEECHHHHhCCCcHHHHHH
Confidence 666678888886432 1345678999999988643211 112235678999999999987655444433
Q ss_pred c----c-cceEEEEcccCCCCcchHhhhH-hhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHH
Q 010367 169 T----K-SHCKLGLTATLVREDERITDLN-FLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (512)
Q Consensus 169 ~----~-~~~~l~LTATp~~~~~~~~~l~-~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (512)
+ . ..+.+++|||+.... ...+. .++ .|.......... ....+......++
T Consensus 171 i~~~~~~~~q~~~~SAT~~~~~--~~~~~~~~~~~~~~i~~~~~~~----~~~~i~~~~~~~~----------------- 227 (434)
T PRK11192 171 IAAETRWRKQTLLFSATLEGDA--VQDFAERLLNDPVEVEAEPSRR----ERKKIHQWYYRAD----------------- 227 (434)
T ss_pred HHHhCccccEEEEEEeecCHHH--HHHHHHHHccCCEEEEecCCcc----cccCceEEEEEeC-----------------
Confidence 3 2 246799999996321 11111 111 122221111000 0000110001110
Q ss_pred HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCcc
Q 010367 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~ 316 (512)
....|..++..++.. ....++||||+++..++.++..|. +.++||++++.+|..+++.|+.+ +++
T Consensus 228 ------~~~~k~~~l~~l~~~---~~~~~~lVF~~s~~~~~~l~~~L~~~~~~~~~l~g~~~~~~R~~~l~~f~~G-~~~ 297 (434)
T PRK11192 228 ------DLEHKTALLCHLLKQ---PEVTRSIVFVRTRERVHELAGWLRKAGINCCYLEGEMVQAKRNEAIKRLTDG-RVN 297 (434)
T ss_pred ------CHHHHHHHHHHHHhc---CCCCeEEEEeCChHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHhCC-CCc
Confidence 011233455555543 246799999999999999999983 34799999999999999999997 999
Q ss_pred EEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 317 vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|||+|+++++|||+|++++||+++.|. |...|+||+||++|.|.
T Consensus 298 vLVaTd~~~~GiDip~v~~VI~~d~p~-s~~~yiqr~GR~gR~g~ 341 (434)
T PRK11192 298 VLVATDVAARGIDIDDVSHVINFDMPR-SADTYLHRIGRTGRAGR 341 (434)
T ss_pred EEEEccccccCccCCCCCEEEEECCCC-CHHHHhhcccccccCCC
Confidence 999999999999999999999998876 99999999999999884
No 24
>PRK01297 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.3e-35 Score=312.89 Aligned_cols=293 Identities=17% Similarity=0.194 Sum_probs=208.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-------------CCCEEEEEcChhhHHHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------------~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
..++|+|.++++.++.+. +.|+.+|||+|||++++.++... ..++|||+|+++|+.|+.+.+..
T Consensus 108 ~~~~~iQ~~ai~~~~~G~---dvi~~apTGSGKTlay~lpil~~l~~~~~~~~~~~~~~~aLil~PtreLa~Q~~~~~~~ 184 (475)
T PRK01297 108 PYCTPIQAQVLGYTLAGH---DAIGRAQTGTGKTAAFLISIINQLLQTPPPKERYMGEPRALIIAPTRELVVQIAKDAAA 184 (475)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhcCcccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 468999999999988765 89999999999999987766432 23699999999999999999998
Q ss_pred hhCCCCCcEEEEcCCccc-----c-ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH---
Q 010367 91 WSTIQDDQICRFTSDSKE-----R-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM--- 161 (512)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~-~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~--- 161 (512)
+.......+..+.|+... . ....++|+|+|+++|.....+. .+....+.+|||||||++....
T Consensus 185 l~~~~~~~v~~~~gg~~~~~~~~~~~~~~~~Iiv~TP~~Ll~~~~~~--------~~~l~~l~~lViDEah~l~~~~~~~ 256 (475)
T PRK01297 185 LTKYTGLNVMTFVGGMDFDKQLKQLEARFCDILVATPGRLLDFNQRG--------EVHLDMVEVMVLDEADRMLDMGFIP 256 (475)
T ss_pred hhccCCCEEEEEEccCChHHHHHHHhCCCCCEEEECHHHHHHHHHcC--------CcccccCceEEechHHHHHhcccHH
Confidence 765445567777776321 1 1346789999999986532211 1112567899999999998653
Q ss_pred -HHHHHHhcc---cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhh
Q 010367 162 -FRKVISLTK---SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (512)
Q Consensus 162 -~~~~l~~~~---~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 237 (512)
+..++..+. ..+.+++|||......... -..+..|............ ..+... +.
T Consensus 257 ~l~~i~~~~~~~~~~q~i~~SAT~~~~~~~~~-~~~~~~~~~v~~~~~~~~~----~~~~~~-~~--------------- 315 (475)
T PRK01297 257 QVRQIIRQTPRKEERQTLLFSATFTDDVMNLA-KQWTTDPAIVEIEPENVAS----DTVEQH-VY--------------- 315 (475)
T ss_pred HHHHHHHhCCCCCCceEEEEEeecCHHHHHHH-HHhccCCEEEEeccCcCCC----CcccEE-EE---------------
Confidence 445555543 3478999999753211110 0112233332221110000 000000 00
Q ss_pred chHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCC
Q 010367 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS 312 (512)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~ 312 (512)
...+..|...+..++.. ....++||||+++..++.++..|. +..+||++++.+|.++++.|++|
T Consensus 316 --------~~~~~~k~~~l~~ll~~---~~~~~~IVF~~s~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~Fr~G 384 (475)
T PRK01297 316 --------AVAGSDKYKLLYNLVTQ---NPWERVMVFANRKDEVRRIEERLVKDGINAAQLSGDVPQHKRIKTLEGFREG 384 (475)
T ss_pred --------EecchhHHHHHHHHHHh---cCCCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHhCC
Confidence 11122334455555543 335799999999999999999883 34689999999999999999998
Q ss_pred CCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 313 ~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++++||+|+++++|||+|++++||+++.+. |...|+||+||+||.|.
T Consensus 385 -~~~vLvaT~~l~~GIDi~~v~~VI~~~~P~-s~~~y~Qr~GRaGR~g~ 431 (475)
T PRK01297 385 -KIRVLVATDVAGRGIHIDGISHVINFTLPE-DPDDYVHRIGRTGRAGA 431 (475)
T ss_pred -CCcEEEEccccccCCcccCCCEEEEeCCCC-CHHHHHHhhCccCCCCC
Confidence 999999999999999999999999998876 99999999999999984
No 25
>PRK04537 ATP-dependent RNA helicase RhlB; Provisional
Probab=100.00 E-value=1.8e-35 Score=315.67 Aligned_cols=293 Identities=16% Similarity=0.139 Sum_probs=209.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c------------CCCEEEEEcChhhHHHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------------KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~------------~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
..++|.|.++++.++.+. +.++.+|||+|||++++.++.. + ..++|||+|+++|+.|+.+.+.+
T Consensus 30 ~~ptpiQ~~~ip~~l~G~---Dvi~~ApTGSGKTlafllpil~~l~~~~~~~~~~~~~~raLIl~PTreLa~Qi~~~~~~ 106 (572)
T PRK04537 30 TRCTPIQALTLPVALPGG---DVAGQAQTGTGKTLAFLVAVMNRLLSRPALADRKPEDPRALILAPTRELAIQIHKDAVK 106 (572)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCcHHHHHHHHHHHHHHhcccccccccCCceEEEEeCcHHHHHHHHHHHHH
Confidence 479999999999998775 8999999999999998877643 1 14799999999999999999999
Q ss_pred hhCCCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH--
Q 010367 91 WSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (512)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~-- 163 (512)
|+......+..++|+... .+....+|+|+|++.|....++. ..+....+.+|||||||++....|.
T Consensus 107 l~~~~~i~v~~l~Gg~~~~~q~~~l~~~~dIiV~TP~rL~~~l~~~-------~~~~l~~v~~lViDEAh~lld~gf~~~ 179 (572)
T PRK04537 107 FGADLGLRFALVYGGVDYDKQRELLQQGVDVIIATPGRLIDYVKQH-------KVVSLHACEICVLDEADRMFDLGFIKD 179 (572)
T ss_pred HhccCCceEEEEECCCCHHHHHHHHhCCCCEEEECHHHHHHHHHhc-------cccchhheeeeEecCHHHHhhcchHHH
Confidence 876555667777776432 13356789999999886542210 0112245688999999998765443
Q ss_pred --HHHHhcc---cceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhh
Q 010367 164 --KVISLTK---SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (512)
Q Consensus 164 --~~l~~~~---~~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 237 (512)
.++..+. ....+++|||....... ....++ .|.......... ....+. ..+..+
T Consensus 180 i~~il~~lp~~~~~q~ll~SATl~~~v~~--l~~~~l~~p~~i~v~~~~~----~~~~i~-q~~~~~------------- 239 (572)
T PRK04537 180 IRFLLRRMPERGTRQTLLFSATLSHRVLE--LAYEHMNEPEKLVVETETI----TAARVR-QRIYFP------------- 239 (572)
T ss_pred HHHHHHhcccccCceEEEEeCCccHHHHH--HHHHHhcCCcEEEeccccc----ccccee-EEEEec-------------
Confidence 3444444 34689999998642211 111111 222111110000 000000 111111
Q ss_pred chHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCC
Q 010367 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCS 312 (512)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~ 312 (512)
....|...+..++.. ..+.++||||+++..++.+++.| .+..+||++++.+|.++++.|+++
T Consensus 240 ----------~~~~k~~~L~~ll~~---~~~~k~LVF~nt~~~ae~l~~~L~~~g~~v~~lhg~l~~~eR~~il~~Fr~G 306 (572)
T PRK04537 240 ----------ADEEKQTLLLGLLSR---SEGARTMVFVNTKAFVERVARTLERHGYRVGVLSGDVPQKKRESLLNRFQKG 306 (572)
T ss_pred ----------CHHHHHHHHHHHHhc---ccCCcEEEEeCCHHHHHHHHHHHHHcCCCEEEEeCCCCHHHHHHHHHHHHcC
Confidence 011233444444443 34789999999999999999998 345799999999999999999997
Q ss_pred CCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 313 ~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+++|||+|+++++|||+|++++||+++.++ +...|+||+||++|.|.
T Consensus 307 -~~~VLVaTdv~arGIDip~V~~VInyd~P~-s~~~yvqRiGRaGR~G~ 353 (572)
T PRK04537 307 -QLEILVATDVAARGLHIDGVKYVYNYDLPF-DAEDYVHRIGRTARLGE 353 (572)
T ss_pred -CCeEEEEehhhhcCCCccCCCEEEEcCCCC-CHHHHhhhhcccccCCC
Confidence 999999999999999999999999998887 99999999999999984
No 26
>KOG0388 consensus SNF2 family DNA-dependent ATPase [Replication, recombination and repair]
Probab=100.00 E-value=3.5e-35 Score=297.22 Aligned_cols=346 Identities=16% Similarity=0.289 Sum_probs=253.5
Q ss_pred CCCCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..+|.+||.++++|+.+- ..+-+||++++||+|||++++.+++.+ .+|+|||+|.++ ..+|.+|+.+| +|
T Consensus 565 ~ctLKEYQlkGLnWLvnlYdqGiNGILADeMGLGKTVQsisvlAhLaE~~nIwGPFLVVtpaSt-L~NWaqEisrF--lP 641 (1185)
T KOG0388|consen 565 KCTLKEYQLKGLNWLVNLYDQGINGILADEMGLGKTVQSISVLAHLAETHNIWGPFLVVTPAST-LHNWAQEISRF--LP 641 (1185)
T ss_pred hhhhHHHhhccHHHHHHHHHccccceehhhhccchhHHHHHHHHHHHHhccCCCceEEeehHHH-HhHHHHHHHHh--Cc
Confidence 468999999999987442 122489999999999999999988765 489999999887 78999999999 67
Q ss_pred CCcEEEEcCCcccc--------------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH
Q 010367 96 DDQICRFTSDSKER--------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM 161 (512)
Q Consensus 96 ~~~v~~~~~~~~~~--------------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~ 161 (512)
..++..|.|+..++ -....+|+||+|+++... -..|.+.+|.++|+|||+.+++..
T Consensus 642 ~~k~lpywGs~~eRkiLrKfw~rKnmY~rna~fhVviTSYQlvVtD----------eky~qkvKWQYMILDEAQAIKSSs 711 (1185)
T KOG0388|consen 642 SFKVLPYWGSPSERKILRKFWNRKNMYRRNAPFHVVITSYQLVVTD----------EKYLQKVKWQYMILDEAQAIKSSS 711 (1185)
T ss_pred cceeecCcCChhhhHHHHHhcchhhhhccCCCceEEEEeeeeeech----------HHHHHhhhhhheehhHHHHhhhhh
Confidence 77889999875542 125689999999999865 234555799999999999999763
Q ss_pred ---HHHHHHhcccceEEEEcccCCCCcchHh-hhHhhhCCceeee--cHHHHHhC---------C---------------
Q 010367 162 ---FRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKLYEA--NWLDLVKG---------G--------------- 211 (512)
Q Consensus 162 ---~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~l~gp~~~~~--~~~~l~~~---------~--------------- 211 (512)
|..++ .++++.+|+|||||+++...+. .|..++-|.++.. .+.+.+.+ +
T Consensus 712 S~RWKtLL-sF~cRNRLLLTGTPIQNsMqELWALLHFIMPsLFDshneFseWFSKdIEshAe~~~tlneqqL~RLH~ILK 790 (1185)
T KOG0388|consen 712 SSRWKTLL-SFKCRNRLLLTGTPIQNSMQELWALLHFIMPSLFDSHNEFSEWFSKDIESHAEMNTTLNEQQLQRLHAILK 790 (1185)
T ss_pred hhHHHHHh-hhhccceeeecCCccchHHHHHHHHHHHHhhHhhhchHHHHHHHhhhhHhHHHhcCCcCHHHHHHHHHHHh
Confidence 44333 3577788999999999865532 2334444443221 00000000 0
Q ss_pred -------------CcccceeEEEEcCCCHHH---HHHHHHhhch------------------------------------
Q 010367 212 -------------FIANVQCAEVWCPMTKEF---FSEYLKKENS------------------------------------ 239 (512)
Q Consensus 212 -------------~l~~~~~~~~~~~~~~~~---~~~~l~~~~~------------------------------------ 239 (512)
-+.......+.|+++... |++.-.....
T Consensus 791 PFMLRRvKkdV~sELg~Kteidv~CdLs~RQ~~lYq~ik~~iS~~E~~~~vmQlrKVCNHPdLFer~e~~s~L~~~V~~n 870 (1185)
T KOG0388|consen 791 PFMLRRVKKDVISELGQKTEIDVYCDLSYRQKVLYQEIKRSISSMEMENLVMQLRKVCNHPDLFERLEPRSGLSLEVSDN 870 (1185)
T ss_pred HHHHHHHHHHHHHHhccceEEEEEechhHHHHHHHHHHHHHhhHHHHHHHHHHHHHhcCChHHHhhcCCcceeEEEcccC
Confidence 011122334556554322 1110000000
Q ss_pred --------------------------------------------------------------------------------
Q 010367 240 -------------------------------------------------------------------------------- 239 (512)
Q Consensus 240 -------------------------------------------------------------------------------- 239 (512)
T Consensus 871 l~dv~S~Grnpi~ykiP~L~~~d~le~~~fniye~i~~~~g~~~~v~Geg~~~w~~~l~~e~k~G~~~~~n~e~~~Kavt 950 (1185)
T KOG0388|consen 871 LGDVVSFGRNPIDYKIPSLVAKDALEMFRFNIYEMIERINGLRRIVNGEGPNAWYLRLSLEFKYGGYVFRNVEEAGKAVT 950 (1185)
T ss_pred HHHHHhCCCCceeecchHHHHHHHHHHHHHhHHHHHHHHhhhHhhhcCCCcchhcccceeeeccCCcccccHHHHHHHHH
Confidence
Q ss_pred ------------HHHHHHh------------------------------------------------------hcCcchH
Q 010367 240 ------------KKKQALY------------------------------------------------------VMNPNKF 253 (512)
Q Consensus 240 ------------~~~~~~~------------------------------------------------------~~~~~k~ 253 (512)
..++++. ...++|+
T Consensus 951 r~ll~p~~~~~e~~~rvi~~e~~~L~~~~y~y~P~v~apPvLI~~ead~PeId~E~~~~pLn~~i~~Ppm~~FitdSgKL 1030 (1185)
T KOG0388|consen 951 RNLLNPESSLLESMRRVIDEEAYRLQRHVYCYSPVVAAPPVLISNEADLPEIDLENRHIPLNTTIYVPPMNTFITDSGKL 1030 (1185)
T ss_pred HHhcCcccchhHHHHHHhhHHHHHhhhheeeeccccCCCCeeeecccCCCCCCccccCcccccceecCcHHhhhccccce
Confidence 0000000 1135688
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCC-----CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccc
Q 010367 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (512)
Q Consensus 254 ~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~-----~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~Gl 328 (512)
..++.|+..+. +.|+++|+|.+...+++.+.++|.. ..++|+.....|..++..|+..+.+-+|++|.+||.||
T Consensus 1031 ~~LDeLL~kLk-aegHRvL~yfQMTkM~dl~EdYl~yr~Y~ylRLDGSsk~~dRrd~vrDwQ~sdiFvFLLSTRAGGLGI 1109 (1185)
T KOG0388|consen 1031 VVLDELLPKLK-AEGHRVLMYFQMTKMIDLIEDYLVYRGYTYLRLDGSSKASDRRDVVRDWQASDIFVFLLSTRAGGLGI 1109 (1185)
T ss_pred eeHHHHHHHhh-cCCceEEehhHHHHHHHHHHHHHHhhccceEEecCcchhhHHHHHHhhccCCceEEEEEecccCcccc
Confidence 89999999998 8999999999999999999999943 34899999999999999999963334455689999999
Q ss_pred cCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHH
Q 010367 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (512)
Q Consensus 329 Dlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r 395 (512)
|+..|++||+|++.| ||....|+++|+||.| |.+.+.+|+|+..+|+|+.+..+.
T Consensus 1110 NLTAADTViFYdSDW-NPT~D~QAMDRAHRLG-----------QTrdvtvyrl~~rgTvEEk~l~rA 1164 (1185)
T KOG0388|consen 1110 NLTAADTVIFYDSDW-NPTADQQAMDRAHRLG-----------QTRDVTVYRLITRGTVEEKVLERA 1164 (1185)
T ss_pred cccccceEEEecCCC-CcchhhHHHHHHHhcc-----------CccceeeeeecccccHHHHHHHHh
Confidence 999999999999998 9999999999999999 666799999999999999775443
No 27
>KOG1000 consensus Chromatin remodeling protein HARP/SMARCAL1, DEAD-box superfamily [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-34 Score=284.30 Aligned_cols=354 Identities=18% Similarity=0.220 Sum_probs=241.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
-.|.|||++++...++.++ +++++++||+|||++|++++...+ .+.|||||.+ +...|.+++.+|++.-.. |.+
T Consensus 197 s~LlPFQreGv~faL~RgG--R~llADeMGLGKTiQAlaIA~yyraEwplliVcPAs-vrftWa~al~r~lps~~p-i~v 272 (689)
T KOG1000|consen 197 SRLLPFQREGVIFALERGG--RILLADEMGLGKTIQALAIARYYRAEWPLLIVCPAS-VRFTWAKALNRFLPSIHP-IFV 272 (689)
T ss_pred HhhCchhhhhHHHHHhcCC--eEEEecccccchHHHHHHHHHHHhhcCcEEEEecHH-HhHHHHHHHHHhcccccc-eEE
Confidence 4689999999999998874 899999999999999999997665 5999999976 589999999999864322 444
Q ss_pred EcCCccc--cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH---HHHHHhc-ccceEE
Q 010367 102 FTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---RKVISLT-KSHCKL 175 (512)
Q Consensus 102 ~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~---~~~l~~~-~~~~~l 175 (512)
..+.... .+.....|.|.+|+++... .+.+...+|.+||+||+|++++..- +.++..+ .+.++|
T Consensus 273 v~~~~D~~~~~~t~~~v~ivSye~ls~l----------~~~l~~~~~~vvI~DEsH~Lk~sktkr~Ka~~dllk~akhvI 342 (689)
T KOG1000|consen 273 VDKSSDPLPDVCTSNTVAIVSYEQLSLL----------HDILKKEKYRVVIFDESHMLKDSKTKRTKAATDLLKVAKHVI 342 (689)
T ss_pred EecccCCccccccCCeEEEEEHHHHHHH----------HHHHhcccceEEEEechhhhhccchhhhhhhhhHHHHhhheE
Confidence 4443322 2335577999999998754 3455557799999999999997533 2233322 346789
Q ss_pred EEcccCCCC--cch---HhhhHhhhCCceeeec--------------------HHHHH------------h---CCCccc
Q 010367 176 GLTATLVRE--DER---ITDLNFLIGPKLYEAN--------------------WLDLV------------K---GGFIAN 215 (512)
Q Consensus 176 ~LTATp~~~--~~~---~~~l~~l~gp~~~~~~--------------------~~~l~------------~---~~~l~~ 215 (512)
+|||||.-. .+. +..+...++|..++.. ..++. + -+-+.+
T Consensus 343 LLSGTPavSRP~elytqi~avd~tlfp~f~efa~rYCd~k~vr~~~Dykg~tnl~EL~~lL~k~lMIRRlK~dvL~qLPp 422 (689)
T KOG1000|consen 343 LLSGTPAVSRPSELYTQIRAVDHTLFPNFHEFAIRYCDGKQVRFCFDYKGCTNLEELAALLFKRLMIRRLKADVLKQLPP 422 (689)
T ss_pred EecCCcccCCchhhhhhhhhhcccccccHHHHHHHhcCccccceeeecCCCCCHHHHHHHHHHHHHHHHHHHHHHhhCCc
Confidence 999999632 111 1111122222221110 00000 0 012222
Q ss_pred cee-EEEEcCCCHHH-HHHHHH------hhchHHHH---HHhh---cCcchHH-HHHHHHH--HhhhcCCCeEEEEecCH
Q 010367 216 VQC-AEVWCPMTKEF-FSEYLK------KENSKKKQ---ALYV---MNPNKFR-ACEFLIR--FHEQQRGDKIIVFADNL 278 (512)
Q Consensus 216 ~~~-~~~~~~~~~~~-~~~~l~------~~~~~~~~---~~~~---~~~~k~~-~l~~ll~--~~~~~~g~k~iVf~~~~ 278 (512)
.+- ..+.++-.... ....+. ..+...+. ++.. ..-.|.. ++++|+. ++...++.|++|||...
T Consensus 423 Krr~Vv~~~~gr~da~~~~lv~~a~~~t~~~~~e~~~~~l~l~y~~tgiaK~~av~eyi~~~~~l~d~~~~KflVFaHH~ 502 (689)
T KOG1000|consen 423 KRREVVYVSGGRIDARMDDLVKAAADYTKVNSMERKHESLLLFYSLTGIAKAAAVCEYILENYFLPDAPPRKFLVFAHHQ 502 (689)
T ss_pred cceEEEEEcCCccchHHHHHHHHhhhcchhhhhhhhhHHHHHHHHHhcccccHHHHHHHHhCcccccCCCceEEEEehhH
Confidence 221 11112211111 111110 00000010 1111 1112333 4555554 12227789999999999
Q ss_pred HHHHHHHHHhC---C--CceeCCCCHHHHHHHHHHhhCCCCccEEEE-eCCCcccccCccccEEEEecCCCCCHHHHHHH
Q 010367 279 FALTEYAMKLR---K--PMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQR 352 (512)
Q Consensus 279 ~~~~~l~~~L~---~--~~i~g~~~~~eR~~il~~F~~~~~~~vlv~-t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~ 352 (512)
..++.+...++ + ..|+|.+++.+|..+.+.|+.++++.|-|. ..++++|+++..+++|++..-+| ||...+|+
T Consensus 503 ~vLd~Iq~~~~~r~vg~IRIDGst~s~~R~ll~qsFQ~seev~VAvlsItA~gvGLt~tAa~~VVFaEL~w-nPgvLlQA 581 (689)
T KOG1000|consen 503 IVLDTIQVEVNKRKVGSIRIDGSTPSHRRTLLCQSFQTSEEVRVAVLSITAAGVGLTLTAASVVVFAELHW-NPGVLLQA 581 (689)
T ss_pred HHHHHHHHHHHHcCCCeEEecCCCCchhHHHHHHHhccccceEEEEEEEeecccceeeeccceEEEEEecC-CCceEEec
Confidence 99999998883 3 358999999999999999999988888776 48999999999999999987777 99999999
Q ss_pred hhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHHhcC
Q 010367 353 LGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQG 403 (512)
Q Consensus 353 ~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g 403 (512)
-+|+||.| |...+++|.|+.++|.+++++..-+++|.-.+
T Consensus 582 EDRaHRiG-----------QkssV~v~ylvAKgT~Ddy~Wp~l~~KL~vl~ 621 (689)
T KOG1000|consen 582 EDRAHRIG-----------QKSSVFVQYLVAKGTADDYMWPMLQQKLDVLG 621 (689)
T ss_pred hhhhhhcc-----------ccceeeEEEEEecCchHHHHHHHHHHHHHHHh
Confidence 99999999 55579999999999999999999999886544
No 28
>KOG0331 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=100.00 E-value=4.8e-35 Score=297.14 Aligned_cols=297 Identities=19% Similarity=0.248 Sum_probs=218.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-hcC----------C-CEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK----------K-SCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~~----------~-~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..|.|.|..+++.++.+. +++..+.||+|||+.++.++. ++. . .+|||+||++|+.|..+++..+
T Consensus 112 ~~PtpIQaq~wp~~l~Gr---D~v~iA~TGSGKTLay~lP~i~~l~~~~~~~~~~~~P~vLVL~PTRELA~QV~~~~~~~ 188 (519)
T KOG0331|consen 112 EKPTPIQAQGWPIALSGR---DLVGIARTGSGKTLAYLLPAIVHLNNEQGKLSRGDGPIVLVLAPTRELAVQVQAEAREF 188 (519)
T ss_pred CCCchhhhcccceeccCC---ceEEEeccCCcchhhhhhHHHHHHHhccccccCCCCCeEEEEcCcHHHHHHHHHHHHHH
Confidence 479999999999888774 999999999999999876662 111 2 4999999999999999999999
Q ss_pred hCCCCC-cEEEEcCCccc----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HH
Q 010367 92 STIQDD-QICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MF 162 (512)
Q Consensus 92 ~~~~~~-~v~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~ 162 (512)
..-... .+++|.|..+. .+....+|+|+||+.|....+.. .+....+.++|+|||+++... ..
T Consensus 189 ~~~~~~~~~cvyGG~~~~~Q~~~l~~gvdiviaTPGRl~d~le~g--------~~~l~~v~ylVLDEADrMldmGFe~qI 260 (519)
T KOG0331|consen 189 GKSLRLRSTCVYGGAPKGPQLRDLERGVDVVIATPGRLIDLLEEG--------SLNLSRVTYLVLDEADRMLDMGFEPQI 260 (519)
T ss_pred cCCCCccEEEEeCCCCccHHHHHHhcCCcEEEeCChHHHHHHHcC--------CccccceeEEEeccHHhhhccccHHHH
Confidence 755444 44555554332 24567999999999886543221 122256789999999999865 55
Q ss_pred HHHHHhc-ccc-eEEEEcccCCCCcchHhhhHhhhCCceeeecHH-HHHhCCCcccceeEEEEcCCCHHHHHHHHHhhch
Q 010367 163 RKVISLT-KSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWL-DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (512)
Q Consensus 163 ~~~l~~~-~~~-~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~-~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (512)
++++..+ +.. +.|+.|||-......+.. .++-.|......-. ++. ....
T Consensus 261 ~~Il~~i~~~~rQtlm~saTwp~~v~~lA~-~fl~~~~~i~ig~~~~~~---------------------------a~~~ 312 (519)
T KOG0331|consen 261 RKILSQIPRPDRQTLMFSATWPKEVRQLAE-DFLNNPIQINVGNKKELK---------------------------ANHN 312 (519)
T ss_pred HHHHHhcCCCcccEEEEeeeccHHHHHHHH-HHhcCceEEEecchhhhh---------------------------hhcc
Confidence 6777777 444 489999998754333211 11112222111100 111 1111
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCC
Q 010367 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (512)
Q Consensus 240 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~ 314 (512)
..+....+....|...+..++..+....+.|+||||+++..++.++..|. +..|||+.++.+|+.+|+.|++| +
T Consensus 313 i~qive~~~~~~K~~~l~~lL~~~~~~~~~KvIIFc~tkr~~~~l~~~l~~~~~~a~~iHGd~sQ~eR~~~L~~FreG-~ 391 (519)
T KOG0331|consen 313 IRQIVEVCDETAKLRKLGKLLEDISSDSEGKVIIFCETKRTCDELARNLRRKGWPAVAIHGDKSQSERDWVLKGFREG-K 391 (519)
T ss_pred hhhhhhhcCHHHHHHHHHHHHHHHhccCCCcEEEEecchhhHHHHHHHHHhcCcceeeecccccHHHHHHHHHhcccC-C
Confidence 12222233344566777777765543567799999999999999999984 44799999999999999999998 9
Q ss_pred ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 315 ~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
..|||||+++++|||+|++++||+|++|. +...|+||+||+||.|.
T Consensus 392 ~~vLVATdVAaRGLDi~dV~lVInydfP~-~vEdYVHRiGRTGRa~~ 437 (519)
T KOG0331|consen 392 SPVLVATDVAARGLDVPDVDLVINYDFPN-NVEDYVHRIGRTGRAGK 437 (519)
T ss_pred cceEEEcccccccCCCccccEEEeCCCCC-CHHHHHhhcCccccCCC
Confidence 99999999999999999999999999886 99999999999999884
No 29
>PRK11448 hsdR type I restriction enzyme EcoKI subunit R; Provisional
Probab=100.00 E-value=1.6e-34 Score=324.20 Aligned_cols=325 Identities=18% Similarity=0.218 Sum_probs=218.8
Q ss_pred CCCCcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
.+.|||||.+|+..+... .+.+++++++|||+|||++++.++..+ .+++|+|||+.+|+.||.++|..+. .+
T Consensus 411 ~~~lR~YQ~~AI~ai~~a~~~g~r~~Ll~maTGSGKT~tai~li~~L~~~~~~~rVLfLvDR~~L~~Qa~~~F~~~~-~~ 489 (1123)
T PRK11448 411 GLGLRYYQEDAIQAVEKAIVEGQREILLAMATGTGKTRTAIALMYRLLKAKRFRRILFLVDRSALGEQAEDAFKDTK-IE 489 (1123)
T ss_pred CCCCCHHHHHHHHHHHHHHHhccCCeEEEeCCCCCHHHHHHHHHHHHHhcCccCeEEEEecHHHHHHHHHHHHHhcc-cc
Confidence 468999999999887531 123589999999999999988887554 2589999999999999999999873 22
Q ss_pred CC-cEE-EE--cCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc------------
Q 010367 96 DD-QIC-RF--TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------------ 159 (512)
Q Consensus 96 ~~-~v~-~~--~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~------------ 159 (512)
.. .+. .+ .+-..........|+|+|++++.+......+ ....+....+++||+||||+..+
T Consensus 490 ~~~~~~~i~~i~~L~~~~~~~~~~I~iaTiQtl~~~~~~~~~---~~~~~~~~~fdlIIiDEaHRs~~~d~~~~~~~~~~ 566 (1123)
T PRK11448 490 GDQTFASIYDIKGLEDKFPEDETKVHVATVQGMVKRILYSDD---PMDKPPVDQYDCIIVDEAHRGYTLDKEMSEGELQF 566 (1123)
T ss_pred cccchhhhhchhhhhhhcccCCCCEEEEEHHHHHHhhhcccc---ccccCCCCcccEEEEECCCCCCccccccccchhcc
Confidence 21 111 11 1111111234578999999988654211100 00112235788999999999752
Q ss_pred -------hHHHHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCccc----ceeEEEE----cC
Q 010367 160 -------HMFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIAN----VQCAEVW----CP 224 (512)
Q Consensus 160 -------~~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~----~~~~~~~----~~ 224 (512)
..|++++..+. ..+|||||||.+.. ..+||..++.++..++++.|++.+ +.+.... ..
T Consensus 567 ~~~~~~~~~yr~iL~yFd-A~~IGLTATP~r~t------~~~FG~pv~~Ysl~eAI~DG~Lv~~~~p~~i~t~~~~~gi~ 639 (1123)
T PRK11448 567 RDQLDYVSKYRRVLDYFD-AVKIGLTATPALHT------TEIFGEPVYTYSYREAVIDGYLIDHEPPIRIETRLSQEGIH 639 (1123)
T ss_pred chhhhHHHHHHHHHhhcC-ccEEEEecCCccch------hHHhCCeeEEeeHHHHHhcCCcccCcCCEEEEEEecccccc
Confidence 47788888775 47899999998632 457788899999999999999983 3332211 00
Q ss_pred CC-HHH---HHHH---HHhh-ch------HHHHHHhhcCcchH-HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC
Q 010367 225 MT-KEF---FSEY---LKKE-NS------KKKQALYVMNPNKF-RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR 289 (512)
Q Consensus 225 ~~-~~~---~~~~---l~~~-~~------~~~~~~~~~~~~k~-~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~ 289 (512)
.. .+. +... +... .. .....-...++... .++..+++......+.|+||||.++.+++.+++.|+
T Consensus 640 ~~~~e~~~~~~~~~~~i~~~~l~d~~~~~~~~~~~~vi~~~~~~~i~~~l~~~l~~~~~~KtiIF~~s~~HA~~i~~~L~ 719 (1123)
T PRK11448 640 FEKGEEVEVINTQTGEIDLATLEDEVDFEVEDFNRRVITESFNRVVCEELAKYLDPTGEGKTLIFAATDAHADMVVRLLK 719 (1123)
T ss_pred ccccchhhhcchhhhhhhhccCcHHHhhhHHHHHHHHhhHHHHHHHHHHHHHHHhccCCCcEEEEEcCHHHHHHHHHHHH
Confidence 00 110 1000 0000 00 00000001122211 245556655432334799999999999998877652
Q ss_pred --------------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhc
Q 010367 290 --------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355 (512)
Q Consensus 290 --------------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR 355 (512)
+..++|+++ ++.+++++|+++...+|+|+++++++|+|+|.+.+||++++. .|...|.|++||
T Consensus 720 ~~f~~~~~~~~~~~v~~itg~~~--~~~~li~~Fk~~~~p~IlVsvdmL~TG~DvP~v~~vVf~rpv-kS~~lf~QmIGR 796 (1123)
T PRK11448 720 EAFKKKYGQVEDDAVIKITGSID--KPDQLIRRFKNERLPNIVVTVDLLTTGIDVPSICNLVFLRRV-RSRILYEQMLGR 796 (1123)
T ss_pred HHHHhhcCCcCccceEEEeCCcc--chHHHHHHHhCCCCCeEEEEecccccCCCcccccEEEEecCC-CCHHHHHHHHhh
Confidence 123788875 578899999987333688999999999999999999999776 599999999999
Q ss_pred ccccCC
Q 010367 356 ILRAKG 361 (512)
Q Consensus 356 ~~R~g~ 361 (512)
+.|..+
T Consensus 797 gtR~~~ 802 (1123)
T PRK11448 797 ATRLCP 802 (1123)
T ss_pred hccCCc
Confidence 999986
No 30
>PRK11057 ATP-dependent DNA helicase RecQ; Provisional
Probab=100.00 E-value=1.2e-33 Score=304.80 Aligned_cols=283 Identities=17% Similarity=0.212 Sum_probs=206.3
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
.++||+|.++++.++.+. ++++++|||+|||++++.++....+.+|||+|+++|+.|+.+.|... ++ .+..+.
T Consensus 24 ~~~r~~Q~~ai~~il~g~---dvlv~apTGsGKTl~y~lpal~~~g~tlVisPl~sL~~dqv~~l~~~-gi---~~~~~~ 96 (607)
T PRK11057 24 QQFRPGQQEIIDAVLSGR---DCLVVMPTGGGKSLCYQIPALVLDGLTLVVSPLISLMKDQVDQLLAN-GV---AAACLN 96 (607)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHcCCCEEEEecHHHHHHHHHHHHHHc-CC---cEEEEc
Confidence 379999999999998765 89999999999999999888888889999999999999999999875 33 344444
Q ss_pred CCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------HHHH---H
Q 010367 104 SDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRK---V 165 (512)
Q Consensus 104 ~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~~~~---~ 165 (512)
+..... ..+...++++||+.+... .+.+.+....++++||||||++... .++. +
T Consensus 97 s~~~~~~~~~~~~~~~~g~~~il~~tPe~l~~~--------~~~~~l~~~~l~~iVIDEaH~i~~~G~~fr~~y~~L~~l 168 (607)
T PRK11057 97 STQTREQQLEVMAGCRTGQIKLLYIAPERLMMD--------NFLEHLAHWNPALLAVDEAHCISQWGHDFRPEYAALGQL 168 (607)
T ss_pred CCCCHHHHHHHHHHHhCCCCcEEEEChHHhcCh--------HHHHHHhhCCCCEEEEeCccccccccCcccHHHHHHHHH
Confidence 442211 135678999999988642 3345555567899999999998742 2322 2
Q ss_pred HHhcccceEEEEcccCCCCcchHhhhHhhh---CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHH
Q 010367 166 ISLTKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (512)
Q Consensus 166 l~~~~~~~~l~LTATp~~~~~~~~~l~~l~---gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (512)
...++...+++||||+...... ++...+ .|..+... +- ........+.
T Consensus 169 ~~~~p~~~~v~lTAT~~~~~~~--di~~~l~l~~~~~~~~~--------~~-r~nl~~~v~~------------------ 219 (607)
T PRK11057 169 RQRFPTLPFMALTATADDTTRQ--DIVRLLGLNDPLIQISS--------FD-RPNIRYTLVE------------------ 219 (607)
T ss_pred HHhCCCCcEEEEecCCChhHHH--HHHHHhCCCCeEEEECC--------CC-CCcceeeeee------------------
Confidence 3344556789999999754321 121111 22222111 00 0000000000
Q ss_pred HHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccE
Q 010367 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (512)
Q Consensus 243 ~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~v 317 (512)
...+ +..++.+.....+.++||||+++..++.++..|. +..+||++++.+|.++++.|+.+ +++|
T Consensus 220 ------~~~~---~~~l~~~l~~~~~~~~IIFc~tr~~~e~la~~L~~~g~~v~~~Ha~l~~~~R~~i~~~F~~g-~~~V 289 (607)
T PRK11057 220 ------KFKP---LDQLMRYVQEQRGKSGIIYCNSRAKVEDTAARLQSRGISAAAYHAGLDNDVRADVQEAFQRD-DLQI 289 (607)
T ss_pred ------ccch---HHHHHHHHHhcCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEecCCCCHHHHHHHHHHHHCC-CCCE
Confidence 0011 1222223222457899999999999999999983 45799999999999999999997 9999
Q ss_pred EEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 318 lv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
||+|.++++|||+|++++||+++.|. |...|+|++||+||.|.
T Consensus 290 LVaT~a~~~GIDip~V~~VI~~d~P~-s~~~y~Qr~GRaGR~G~ 332 (607)
T PRK11057 290 VVATVAFGMGINKPNVRFVVHFDIPR-NIESYYQETGRAGRDGL 332 (607)
T ss_pred EEEechhhccCCCCCcCEEEEeCCCC-CHHHHHHHhhhccCCCC
Confidence 99999999999999999999998876 99999999999999985
No 31
>PTZ00424 helicase 45; Provisional
Probab=100.00 E-value=1.1e-34 Score=300.45 Aligned_cols=306 Identities=18% Similarity=0.179 Sum_probs=210.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
..|+|+|.++++.++.+. +.++.+|||+|||++++.++... ..++|||+|+++|+.|+.+.+..+......
T Consensus 49 ~~~~~~Q~~ai~~i~~~~---d~ii~apTGsGKT~~~~l~~l~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~~~~~~ 125 (401)
T PTZ00424 49 EKPSAIQQRGIKPILDGY---DTIGQAQSGTGKTATFVIAALQLIDYDLNACQALILAPTRELAQQIQKVVLALGDYLKV 125 (401)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhcCCCCCceEEEECCCHHHHHHHHHHHHHHhhhcCc
Confidence 369999999999988775 89999999999999987766432 247999999999999999998887654444
Q ss_pred cEEEEcCCcc-----ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH----HHHHh
Q 010367 98 QICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISL 168 (512)
Q Consensus 98 ~v~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~----~~l~~ 168 (512)
.+....|+.. .......+|+|+|++.+.....+. .+....++++|+||||++....|. .++..
T Consensus 126 ~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~l~~i~lvViDEah~~~~~~~~~~~~~i~~~ 197 (401)
T PTZ00424 126 RCHACVGGTVVRDDINKLKAGVHMVVGTPGRVYDMIDKR--------HLRVDDLKLFILDEADEMLSRGFKGQIYDVFKK 197 (401)
T ss_pred eEEEEECCcCHHHHHHHHcCCCCEEEECcHHHHHHHHhC--------CcccccccEEEEecHHHHHhcchHHHHHHHHhh
Confidence 5555555432 112345789999999876532211 112367899999999998875544 33444
Q ss_pred cc-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 169 TK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 169 ~~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
+. ..+++++|||+........ ...+..|........+. .+.......+.++ ...
T Consensus 198 ~~~~~~~i~~SAT~~~~~~~~~-~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~--~~~------------------ 252 (401)
T PTZ00424 198 LPPDVQVALFSATMPNEILELT-TKFMRDPKRILVKKDEL----TLEGIRQFYVAVE--KEE------------------ 252 (401)
T ss_pred CCCCcEEEEEEecCCHHHHHHH-HHHcCCCEEEEeCCCCc----ccCCceEEEEecC--hHH------------------
Confidence 33 3478999999864211110 01111222111110000 0111111111111 100
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
.+...+..++.. ....++||||+++..++.++..|. +..+||++++.+|..+++.|++| +++|||+|+
T Consensus 253 ---~~~~~l~~~~~~---~~~~~~ivF~~t~~~~~~l~~~l~~~~~~~~~~h~~~~~~~R~~i~~~f~~g-~~~vLvaT~ 325 (401)
T PTZ00424 253 ---WKFDTLCDLYET---LTITQAIIYCNTRRKVDYLTKKMHERDFTVSCMHGDMDQKDRDLIMREFRSG-STRVLITTD 325 (401)
T ss_pred ---HHHHHHHHHHHh---cCCCeEEEEecCcHHHHHHHHHHHHCCCcEEEEeCCCCHHHHHHHHHHHHcC-CCCEEEEcc
Confidence 011223333332 235689999999999999999883 45799999999999999999997 999999999
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
++++|||+|++++||+++.+. |...|+||+||+||.|. .+.++.+++.+.
T Consensus 326 ~l~~GiDip~v~~VI~~~~p~-s~~~y~qr~GRagR~g~-------------~G~~i~l~~~~~ 375 (401)
T PTZ00424 326 LLARGIDVQQVSLVINYDLPA-SPENYIHRIGRSGRFGR-------------KGVAINFVTPDD 375 (401)
T ss_pred cccCCcCcccCCEEEEECCCC-CHHHEeecccccccCCC-------------CceEEEEEcHHH
Confidence 999999999999999998876 99999999999999874 244566776544
No 32
>PRK11634 ATP-dependent RNA helicase DeaD; Provisional
Probab=100.00 E-value=2.1e-34 Score=309.23 Aligned_cols=292 Identities=17% Similarity=0.188 Sum_probs=207.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c-----CCCEEEEEcChhhHHHHHHHHHHhhCC-CC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~-~~ 96 (512)
.+|+|+|.++++.++.+. +.|+.+|||+|||++++.++.. + ...+|||||+++|+.||.+++..|... ..
T Consensus 27 ~~ptpiQ~~ai~~ll~g~---dvl~~ApTGsGKT~af~lpll~~l~~~~~~~~~LIL~PTreLa~Qv~~~l~~~~~~~~~ 103 (629)
T PRK11634 27 EKPSPIQAECIPHLLNGR---DVLGMAQTGSGKTAAFSLPLLHNLDPELKAPQILVLAPTRELAVQVAEAMTDFSKHMRG 103 (629)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCCcHHHHHHHHHHHHhhhccCCCeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 579999999999988764 8999999999999998666532 2 237999999999999999999987643 34
Q ss_pred CcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH----HHHH
Q 010367 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVIS 167 (512)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~----~~l~ 167 (512)
..+..++++... .+...++|+|+|++.+.....+. .+...++.+||+||||.+....|. .++.
T Consensus 104 i~v~~~~gG~~~~~q~~~l~~~~~IVVgTPgrl~d~l~r~--------~l~l~~l~~lVlDEAd~ml~~gf~~di~~Il~ 175 (629)
T PRK11634 104 VNVVALYGGQRYDVQLRALRQGPQIVVGTPGRLLDHLKRG--------TLDLSKLSGLVLDEADEMLRMGFIEDVETIMA 175 (629)
T ss_pred ceEEEEECCcCHHHHHHHhcCCCCEEEECHHHHHHHHHcC--------CcchhhceEEEeccHHHHhhcccHHHHHHHHH
Confidence 456666665431 12356889999999886542221 111256789999999998866443 3444
Q ss_pred hcc-cceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 168 LTK-SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
.++ ....+++|||+......+ ...++ .|....... ............+.
T Consensus 176 ~lp~~~q~llfSAT~p~~i~~i--~~~~l~~~~~i~i~~------~~~~~~~i~q~~~~--------------------- 226 (629)
T PRK11634 176 QIPEGHQTALFSATMPEAIRRI--TRRFMKEPQEVRIQS------SVTTRPDISQSYWT--------------------- 226 (629)
T ss_pred hCCCCCeEEEEEccCChhHHHH--HHHHcCCCeEEEccC------ccccCCceEEEEEE---------------------
Confidence 444 346799999986432221 11111 222221110 00000011111100
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
.....|..++..++... ...++||||+++..++.++..|. +..+||++++.+|.+++++|+.+ +++|||+
T Consensus 227 -v~~~~k~~~L~~~L~~~---~~~~~IVF~~tk~~a~~l~~~L~~~g~~~~~lhgd~~q~~R~~il~~Fr~G-~~~ILVA 301 (629)
T PRK11634 227 -VWGMRKNEALVRFLEAE---DFDAAIIFVRTKNATLEVAEALERNGYNSAALNGDMNQALREQTLERLKDG-RLDILIA 301 (629)
T ss_pred -echhhHHHHHHHHHHhc---CCCCEEEEeccHHHHHHHHHHHHhCCCCEEEeeCCCCHHHHHHHHHHHhCC-CCCEEEE
Confidence 00112344555555443 35689999999999999999983 45699999999999999999997 9999999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|+++++|||+|++++||+++.|. ++..|+||+||++|.|.
T Consensus 302 Tdv~arGIDip~V~~VI~~d~P~-~~e~yvqRiGRtGRaGr 341 (629)
T PRK11634 302 TDVAARGLDVERISLVVNYDIPM-DSESYVHRIGRTGRAGR 341 (629)
T ss_pred cchHhcCCCcccCCEEEEeCCCC-CHHHHHHHhccccCCCC
Confidence 99999999999999999998887 99999999999999984
No 33
>KOG0391 consensus SNF2 family DNA-dependent ATPase [General function prediction only]
Probab=100.00 E-value=2.2e-34 Score=303.28 Aligned_cols=134 Identities=20% Similarity=0.293 Sum_probs=120.9
Q ss_pred CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCC-----CceeCCCCHHHHHHHHHHhhCCCCccEEEE-eC
Q 010367 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCSRDLNTIFL-SK 322 (512)
Q Consensus 249 ~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~-----~~i~g~~~~~eR~~il~~F~~~~~~~vlv~-t~ 322 (512)
+.+|++.+.-|+..+. ..|+++|||++...+++.+..+|+. ..++|.++.++|+.++++|+.++.+-++|. |.
T Consensus 1258 DcGKLQtLAiLLqQLk-~eghRvLIfTQMtkmLDVLeqFLnyHgylY~RLDg~t~vEqRQaLmerFNaD~RIfcfILSTr 1336 (1958)
T KOG0391|consen 1258 DCGKLQTLAILLQQLK-SEGHRVLIFTQMTKMLDVLEQFLNYHGYLYVRLDGNTSVEQRQALMERFNADRRIFCFILSTR 1336 (1958)
T ss_pred ccchHHHHHHHHHHHH-hcCceEEehhHHHHHHHHHHHHHhhcceEEEEecCCccHHHHHHHHHHhcCCCceEEEEEecc
Confidence 3578889999998888 8899999999999999999999964 348999999999999999999866665554 89
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHH
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKR 395 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r 395 (512)
.|+.||||.+|++||+||+.| |+.-..|+..|+||+| +.+++.||+||+..|+|+.+.++.
T Consensus 1337 SggvGiNLtgADTVvFYDsDw-NPtMDaQAQDrChRIG-----------qtRDVHIYRLISe~TIEeniLkka 1397 (1958)
T KOG0391|consen 1337 SGGVGINLTGADTVVFYDSDW-NPTMDAQAQDRCHRIG-----------QTRDVHIYRLISERTIEENILKKA 1397 (1958)
T ss_pred CCccccccccCceEEEecCCC-CchhhhHHHHHHHhhc-----------CccceEEEEeeccchHHHHHHhhh
Confidence 999999999999999999998 9999999999999999 666799999999999999888765
No 34
>TIGR03817 DECH_helic helicase/secretion neighborhood putative DEAH-box helicase. A conserved gene neighborhood widely spread in the Actinobacteria contains this uncharacterized DEAH-box family helicase encoded convergently towards an operon of genes for protein homologous to type II secretion and pilus formation proteins. The context suggests that this helicase may play a role in conjugal transfer of DNA.
Probab=100.00 E-value=6.4e-33 Score=303.41 Aligned_cols=333 Identities=15% Similarity=0.159 Sum_probs=223.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.+|+|+|.++++.++.+. +.++.+|||+|||++++.++.. + +.++|||+|+++|+.|..+++..+. .....
T Consensus 35 ~~p~~~Q~~ai~~il~G~---nvvv~apTGSGKTla~~LPiL~~l~~~~~~~aL~l~PtraLa~q~~~~l~~l~-~~~i~ 110 (742)
T TIGR03817 35 HRPWQHQARAAELAHAGR---HVVVATGTASGKSLAYQLPVLSALADDPRATALYLAPTKALAADQLRAVRELT-LRGVR 110 (742)
T ss_pred CcCCHHHHHHHHHHHCCC---CEEEECCCCCcHHHHHHHHHHHHHhhCCCcEEEEEcChHHHHHHHHHHHHHhc-cCCeE
Confidence 379999999999987765 8999999999999998777643 2 2479999999999999999999985 33457
Q ss_pred EEEEcCCccc----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHHHHHHhc--
Q 010367 99 ICRFTSDSKE----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT-- 169 (512)
Q Consensus 99 v~~~~~~~~~----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~~~l~~~-- 169 (512)
+..++|+... .+...++|+|+||+++....-..+ ......+ .+.++||+||||.+... .+..++..+
T Consensus 111 v~~~~Gdt~~~~r~~i~~~~~IivtTPd~L~~~~L~~~--~~~~~~l--~~l~~vViDEah~~~g~fg~~~~~il~rL~r 186 (742)
T TIGR03817 111 PATYDGDTPTEERRWAREHARYVLTNPDMLHRGILPSH--ARWARFL--RRLRYVVIDECHSYRGVFGSHVALVLRRLRR 186 (742)
T ss_pred EEEEeCCCCHHHHHHHhcCCCEEEEChHHHHHhhccch--hHHHHHH--hcCCEEEEeChhhccCccHHHHHHHHHHHHH
Confidence 7888887542 133568999999999874321111 1112223 57899999999998642 222222222
Q ss_pred -----c-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHH
Q 010367 170 -----K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (512)
Q Consensus 170 -----~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (512)
. ..+.+++|||...... ....++|....... ..+.........+|.+.-.+ .........+.
T Consensus 187 i~~~~g~~~q~i~~SATi~n~~~---~~~~l~g~~~~~i~-----~~~~~~~~~~~~~~~p~~~~----~~~~~~~~~r~ 254 (742)
T TIGR03817 187 LCARYGASPVFVLASATTADPAA---AASRLIGAPVVAVT-----EDGSPRGARTVALWEPPLTE----LTGENGAPVRR 254 (742)
T ss_pred HHHhcCCCCEEEEEecCCCCHHH---HHHHHcCCCeEEEC-----CCCCCcCceEEEEecCCccc----ccccccccccc
Confidence 1 3478999999875322 23445553322111 11111111112222221000 00000000000
Q ss_pred HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-------------CCCceeCCCCHHHHHHHHHHhh
Q 010367 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------RKPMIYGATSHVERTKILQAFK 310 (512)
Q Consensus 244 ~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-------------~~~~i~g~~~~~eR~~il~~F~ 310 (512)
.....+...+..++ ..+.++||||+++..++.++..| ++..+||++++++|.+++++|+
T Consensus 255 ---~~~~~~~~~l~~l~-----~~~~~~IVF~~sr~~ae~l~~~l~~~l~~~~~~l~~~v~~~hgg~~~~eR~~ie~~f~ 326 (742)
T TIGR03817 255 ---SASAEAADLLADLV-----AEGARTLTFVRSRRGAELVAAIARRLLGEVDPDLAERVAAYRAGYLPEDRRELERALR 326 (742)
T ss_pred ---chHHHHHHHHHHHH-----HCCCCEEEEcCCHHHHHHHHHHHHHHHHhhccccccchhheecCCCHHHHHHHHHHHH
Confidence 00011223444444 23679999999999999998875 2347899999999999999999
Q ss_pred CCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhH
Q 010367 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (512)
Q Consensus 311 ~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~ 390 (512)
+| ++++||+|+++++|||+|++++||+++.|. +...|+||+||+||.|. .+..+.+++.+..+.+
T Consensus 327 ~G-~i~vLVaTd~lerGIDI~~vd~VI~~~~P~-s~~~y~qRiGRaGR~G~-------------~g~ai~v~~~~~~d~~ 391 (742)
T TIGR03817 327 DG-ELLGVATTNALELGVDISGLDAVVIAGFPG-TRASLWQQAGRAGRRGQ-------------GALVVLVARDDPLDTY 391 (742)
T ss_pred cC-CceEEEECchHhccCCcccccEEEEeCCCC-CHHHHHHhccccCCCCC-------------CcEEEEEeCCChHHHH
Confidence 98 999999999999999999999999998876 99999999999999884 2445566666666666
Q ss_pred HHHHHHHHH
Q 010367 391 YSTKRQQFL 399 (512)
Q Consensus 391 ~~~~r~~~l 399 (512)
+....++++
T Consensus 392 ~~~~~~~~~ 400 (742)
T TIGR03817 392 LVHHPEALF 400 (742)
T ss_pred HHhCHHHHh
Confidence 555444444
No 35
>TIGR00580 mfd transcription-repair coupling factor (mfd). All proteins in this family for which functions are known are DNA-dependent ATPases that function in the process of transcription-coupled DNA repair in which the repair of the transcribed strand of actively transacribed genes is repaired at a higher rate than the repair of non-transcribed regions of the genome and than the non-transcribed strand of the same gene. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University). This family is closely related to the RecG and UvrB families.
Probab=100.00 E-value=4.4e-33 Score=307.62 Aligned_cols=315 Identities=19% Similarity=0.190 Sum_probs=216.5
Q ss_pred CCCCCcHHHHHHHHHHHhC---CCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..++|+|+|.+|++.++.. +++.+.++++|||+|||.+++.++.. .+++++|+|||.+|+.|+.+.|.+++..-
T Consensus 448 ~~f~~T~~Q~~aI~~I~~d~~~~~~~d~Ll~adTGsGKT~val~a~l~al~~g~qvlvLvPT~~LA~Q~~~~f~~~~~~~ 527 (926)
T TIGR00580 448 FPFEETPDQLKAIEEIKADMESPRPMDRLVCGDVGFGKTEVAMRAAFKAVLDGKQVAVLVPTTLLAQQHFETFKERFANF 527 (926)
T ss_pred CCCCCCHHHHHHHHHHHhhhcccCcCCEEEECCCCccHHHHHHHHHHHHHHhCCeEEEEeCcHHHHHHHHHHHHHHhccC
Confidence 3568999999999998764 33357899999999999998876643 35789999999999999999999876544
Q ss_pred CCcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHH
Q 010367 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (512)
Q Consensus 96 ~~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l 166 (512)
+..+..+++..... ..+..+|+|+|+..+... +.-.+++++|+||+|++....... +
T Consensus 528 ~i~v~~Lsg~~~~~e~~~~~~~l~~g~~dIVIGTp~ll~~~-------------v~f~~L~llVIDEahrfgv~~~~~-L 593 (926)
T TIGR00580 528 PVTIELLSRFRSAKEQNEILKELASGKIDILIGTHKLLQKD-------------VKFKDLGLLIIDEEQRFGVKQKEK-L 593 (926)
T ss_pred CcEEEEEeccccHHHHHHHHHHHHcCCceEEEchHHHhhCC-------------CCcccCCEEEeecccccchhHHHH-H
Confidence 55677777653211 124689999999766422 112577999999999986554443 4
Q ss_pred Hhc-ccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 167 SLT-KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 167 ~~~-~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
..+ ....+|+|||||.+..... .+.....+....... .+ -.++. ....+....
T Consensus 594 ~~~~~~~~vL~~SATpiprtl~~-~l~g~~d~s~I~~~p-----~~-R~~V~--t~v~~~~~~----------------- 647 (926)
T TIGR00580 594 KELRTSVDVLTLSATPIPRTLHM-SMSGIRDLSIIATPP-----ED-RLPVR--TFVMEYDPE----------------- 647 (926)
T ss_pred HhcCCCCCEEEEecCCCHHHHHH-HHhcCCCcEEEecCC-----CC-ccceE--EEEEecCHH-----------------
Confidence 444 3457999999997532211 111111111111100 00 00111 111111110
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-------CCceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
.+...+.... .++.+++|||++++.++.+++.|. +..+||++++.+|.+++++|+++ +++||
T Consensus 648 --------~i~~~i~~el--~~g~qv~if~n~i~~~e~l~~~L~~~~p~~~v~~lHG~m~~~eRe~im~~F~~G-k~~IL 716 (926)
T TIGR00580 648 --------LVREAIRREL--LRGGQVFYVHNRIESIEKLATQLRELVPEARIAIAHGQMTENELEEVMLEFYKG-EFQVL 716 (926)
T ss_pred --------HHHHHHHHHH--HcCCeEEEEECCcHHHHHHHHHHHHhCCCCeEEEecCCCCHHHHHHHHHHHHcC-CCCEE
Confidence 1111222222 347799999999999999888873 34699999999999999999998 99999
Q ss_pred EEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHH
Q 010367 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~ 398 (512)
|||+++++|+|+|++++||+++.+.-+..++.|++||+||.|. .+++|.++..+..--.-+.+|-+.
T Consensus 717 VaT~iie~GIDIp~v~~VIi~~a~~~gls~l~Qr~GRvGR~g~-------------~g~aill~~~~~~l~~~~~~RL~~ 783 (926)
T TIGR00580 717 VCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSKK-------------KAYAYLLYPHQKALTEDAQKRLEA 783 (926)
T ss_pred EECChhhcccccccCCEEEEecCCCCCHHHHHHHhcCCCCCCC-------------CeEEEEEECCcccCCHHHHHHHHH
Confidence 9999999999999999999987754477899999999999774 366677775543222344555555
Q ss_pred HH
Q 010367 399 LI 400 (512)
Q Consensus 399 l~ 400 (512)
+.
T Consensus 784 ~~ 785 (926)
T TIGR00580 784 IQ 785 (926)
T ss_pred HH
Confidence 54
No 36
>TIGR01389 recQ ATP-dependent DNA helicase RecQ. The ATP-dependent DNA helicase RecQ of E. coli is about 600 residues long. This model represents bacterial proteins with a high degree of similarity in domain architecture and in primary sequence to E. coli RecQ. The model excludes eukaryotic and archaeal proteins with RecQ-like regions, as well as more distantly related bacterial helicases related to RecQ.
Probab=100.00 E-value=1.4e-32 Score=297.10 Aligned_cols=282 Identities=19% Similarity=0.201 Sum_probs=207.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~ 104 (512)
++||+|.++++.++.+. +.++++|||+|||++++.++....+.++||+|+.+|+.|+.+.+... ++ .+..+++
T Consensus 13 ~fr~~Q~~~i~~il~g~---dvlv~~PTG~GKTl~y~lpal~~~g~~lVisPl~sL~~dq~~~l~~~-gi---~~~~~~s 85 (591)
T TIGR01389 13 DFRPGQEEIISHVLDGR---DVLVVMPTGGGKSLCYQVPALLLKGLTVVISPLISLMKDQVDQLRAA-GV---AAAYLNS 85 (591)
T ss_pred CCCHHHHHHHHHHHcCC---CEEEEcCCCccHhHHHHHHHHHcCCcEEEEcCCHHHHHHHHHHHHHc-CC---cEEEEeC
Confidence 69999999999999775 89999999999999999888877889999999999999999999885 43 4566666
Q ss_pred Ccccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc--h----HHHHH---H
Q 010367 105 DSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--H----MFRKV---I 166 (512)
Q Consensus 105 ~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~--~----~~~~~---l 166 (512)
+.... ..+..+|+++|++.+... .+...+....++++|+||||++.. . .+..+ .
T Consensus 86 ~~~~~~~~~~~~~l~~~~~~il~~tpe~l~~~--------~~~~~l~~~~l~~iViDEaH~i~~~g~~frp~y~~l~~l~ 157 (591)
T TIGR01389 86 TLSAKEQQDIEKALVNGELKLLYVAPERLEQD--------YFLNMLQRIPIALVAVDEAHCVSQWGHDFRPEYQRLGSLA 157 (591)
T ss_pred CCCHHHHHHHHHHHhCCCCCEEEEChhHhcCh--------HHHHHHhcCCCCEEEEeCCcccccccCccHHHHHHHHHHH
Confidence 53211 235678999999998642 234455557899999999999874 2 33332 3
Q ss_pred HhcccceEEEEcccCCCCcchHhhhHhhhC---CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHH
Q 010367 167 SLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (512)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~~~~~~l~~l~g---p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (512)
..++...+++||||+...... ++...++ +..+. ..+-.+-....+..
T Consensus 158 ~~~~~~~vi~lTAT~~~~~~~--~i~~~l~~~~~~~~~--------~~~~r~nl~~~v~~-------------------- 207 (591)
T TIGR01389 158 ERFPQVPRIALTATADAETRQ--DIRELLRLADANEFI--------TSFDRPNLRFSVVK-------------------- 207 (591)
T ss_pred HhCCCCCEEEEEeCCCHHHHH--HHHHHcCCCCCCeEe--------cCCCCCCcEEEEEe--------------------
Confidence 344455689999999753321 2222221 11111 01111100111110
Q ss_pred HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 244 ~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
...+...+..++.. ..+.++||||+++..++.+++.|. +..+||+++.++|..+++.|..+ +++||
T Consensus 208 -----~~~~~~~l~~~l~~---~~~~~~IIf~~sr~~~e~la~~L~~~g~~~~~~H~~l~~~~R~~i~~~F~~g-~~~vl 278 (591)
T TIGR01389 208 -----KNNKQKFLLDYLKK---HRGQSGIIYASSRKKVEELAERLESQGISALAYHAGLSNKVRAENQEDFLYD-DVKVM 278 (591)
T ss_pred -----CCCHHHHHHHHHHh---cCCCCEEEEECcHHHHHHHHHHHHhCCCCEEEEECCCCHHHHHHHHHHHHcC-CCcEE
Confidence 01122233333333 337789999999999999999983 34689999999999999999997 89999
Q ss_pred EEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|+|.++++|||+|++++||+++.|. |...|+|++||+||.|.
T Consensus 279 VaT~a~~~GID~p~v~~VI~~~~p~-s~~~y~Q~~GRaGR~G~ 320 (591)
T TIGR01389 279 VATNAFGMGIDKPNVRFVIHYDMPG-NLESYYQEAGRAGRDGL 320 (591)
T ss_pred EEechhhccCcCCCCCEEEEcCCCC-CHHHHhhhhccccCCCC
Confidence 9999999999999999999998876 99999999999999884
No 37
>PLN03137 ATP-dependent DNA helicase; Q4-like; Provisional
Probab=100.00 E-value=1.1e-32 Score=300.48 Aligned_cols=289 Identities=16% Similarity=0.149 Sum_probs=202.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
..+||+|.++|+.++.+. ++++++|||+|||++++.++....+.+|||+|+++|+.++...+... ++ .+..+.
T Consensus 459 ~sFRp~Q~eaI~aiL~Gr---DVLVimPTGSGKSLcYQLPAL~~~GiTLVISPLiSLmqDQV~~L~~~-GI---~Aa~L~ 531 (1195)
T PLN03137 459 HSFRPNQREIINATMSGY---DVFVLMPTGGGKSLTYQLPALICPGITLVISPLVSLIQDQIMNLLQA-NI---PAASLS 531 (1195)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEcCCCccHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhC-CC---eEEEEE
Confidence 479999999999998775 99999999999999999999888889999999999998766666553 33 344455
Q ss_pred CCcccc-----------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHh-cCCccEEEEcCCCCCCch------HHHH-
Q 010367 104 SDSKER-----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR-NREWGLLLMDEVHVVPAH------MFRK- 164 (512)
Q Consensus 104 ~~~~~~-----------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~-~~~~~lvIiDEaH~~~~~------~~~~- 164 (512)
++.... ..+..+|+++||+.|..... ....+..+. ...+.+|||||||++..- .|+.
T Consensus 532 s~~s~~eq~~ilr~l~s~~g~~~ILyvTPERL~~~d~----ll~~L~~L~~~~~LslIVIDEAHcVSqWGhDFRpdYr~L 607 (1195)
T PLN03137 532 AGMEWAEQLEILQELSSEYSKYKLLYVTPEKVAKSDS----LLRHLENLNSRGLLARFVIDEAHCVSQWGHDFRPDYQGL 607 (1195)
T ss_pred CCCCHHHHHHHHHHHHhcCCCCCEEEEChHHhhcchH----HHHHHHhhhhccccceeccCcchhhhhcccchHHHHHHH
Confidence 542210 11568999999999864210 111222222 134789999999998742 3332
Q ss_pred --HHHhcccceEEEEcccCCCCcchHhhhHhhh---CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhch
Q 010367 165 --VISLTKSHCKLGLTATLVREDERITDLNFLI---GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (512)
Q Consensus 165 --~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~---gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (512)
+...++...+++||||....... ++...+ .+.++.. ++-.+ ......++....
T Consensus 608 ~~Lr~~fp~vPilALTATAT~~V~e--DI~~~L~l~~~~vfr~--------Sf~Rp-NL~y~Vv~k~kk----------- 665 (1195)
T PLN03137 608 GILKQKFPNIPVLALTATATASVKE--DVVQALGLVNCVVFRQ--------SFNRP-NLWYSVVPKTKK----------- 665 (1195)
T ss_pred HHHHHhCCCCCeEEEEecCCHHHHH--HHHHHcCCCCcEEeec--------ccCcc-ceEEEEeccchh-----------
Confidence 23344556789999998754322 222222 2222221 11111 111111110000
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCC
Q 010367 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (512)
Q Consensus 240 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~ 314 (512)
....+..++... ..+...||||.++..++.++..|. +..+||++++.+|..++++|..+ +
T Consensus 666 ------------~le~L~~~I~~~--~~~esgIIYC~SRke~E~LAe~L~~~Gika~~YHAGLs~eeR~~vqe~F~~G-e 730 (1195)
T PLN03137 666 ------------CLEDIDKFIKEN--HFDECGIIYCLSRMDCEKVAERLQEFGHKAAFYHGSMDPAQRAFVQKQWSKD-E 730 (1195)
T ss_pred ------------HHHHHHHHHHhc--ccCCCceeEeCchhHHHHHHHHHHHCCCCeeeeeCCCCHHHHHHHHHHHhcC-C
Confidence 001122222211 225678999999999999999983 56799999999999999999997 9
Q ss_pred ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 315 ~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|||+|.++++|||+|++++||+++.|. |...|+|++||+||.|.
T Consensus 731 i~VLVATdAFGMGIDkPDVR~VIHydlPk-SiEsYyQriGRAGRDG~ 776 (1195)
T PLN03137 731 INIICATVAFGMGINKPDVRFVIHHSLPK-SIEGYHQECGRAGRDGQ 776 (1195)
T ss_pred CcEEEEechhhcCCCccCCcEEEEcCCCC-CHHHHHhhhcccCCCCC
Confidence 99999999999999999999999998876 99999999999999996
No 38
>KOG4439 consensus RNA polymerase II transcription termination factor TTF2/lodestar, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=100.00 E-value=8.3e-33 Score=280.82 Aligned_cols=367 Identities=18% Similarity=0.214 Sum_probs=255.0
Q ss_pred CCCCCCcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHhcC-------------CCEEEEEcChhhHHHHH
Q 010367 21 KPHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRIK-------------KSCLCLATNAVSVDQWA 85 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~~-------------~~~Lvl~P~~~L~~Qw~ 85 (512)
...+.|.|||+.++.||... ..+..||+.+.+|.|||++.+.++...+ .++|||||-+ |+.||.
T Consensus 321 g~~v~LmpHQkaal~Wl~wRE~q~~~GGILaddmGLGKTlsmislil~qK~~~~~~~~~~~~a~~TLII~PaS-li~qW~ 399 (901)
T KOG4439|consen 321 GLKVELMPHQKAALRWLLWRESQPPSGGILADDMGLGKTLSMISLILHQKAARKAREKKGESASKTLIICPAS-LIHQWE 399 (901)
T ss_pred cceeecchhhhhhhhhhcccccCCCCCcccccccccccchHHHHHHHHHHHHHHhhcccccccCCeEEeCcHH-HHHHHH
Confidence 34578999999999998643 3457899999999999999888885331 2599999965 799999
Q ss_pred HHHHHhhCCCCCcEEEEcCCccccc----cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-
Q 010367 86 FQFKLWSTIQDDQICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH- 160 (512)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~- 160 (512)
.|+.....-+...|.+|+|..+... -..++||||||..+.+......+......-|....|.-||+||||.+.+.
T Consensus 400 ~Ev~~rl~~n~LsV~~~HG~n~r~i~~~~L~~YDvViTTY~lva~~~~~e~~~~~~~spL~~I~W~RVILDEAH~IrN~~ 479 (901)
T KOG4439|consen 400 AEVARRLEQNALSVYLYHGPNKREISAKELRKYDVVITTYNLVANKPDDELEEGKNSSPLARIAWSRVILDEAHNIRNSN 479 (901)
T ss_pred HHHHHHHhhcceEEEEecCCccccCCHHHHhhcceEEEeeeccccCCchhhhcccCccHHHHhhHHHhhhhhhhhhcccc
Confidence 9999988777889999999885332 26799999999998872110000011112233467999999999999986
Q ss_pred -HHHHHHHhcccceEEEEcccCCCCcch--HhhhHhh-----------------------------hCCceeeecHHHHH
Q 010367 161 -MFRKVISLTKSHCKLGLTATLVREDER--ITDLNFL-----------------------------IGPKLYEANWLDLV 208 (512)
Q Consensus 161 -~~~~~l~~~~~~~~l~LTATp~~~~~~--~~~l~~l-----------------------------~gp~~~~~~~~~l~ 208 (512)
.....+..+.++++.+|||||+++..- ...+.|+ ..+...+.+...+.
T Consensus 480 tq~S~AVC~L~a~~RWclTGTPiqNn~~DvysLlrFLr~~pF~D~~~Wke~i~~~s~~g~~rlnll~K~LmLRRTKdQl~ 559 (901)
T KOG4439|consen 480 TQCSKAVCKLSAKSRWCLTGTPIQNNLWDVYSLLRFLRCPPFGDLKQWKENIDNMSKGGANRLNLLTKSLMLRRTKDQLQ 559 (901)
T ss_pred hhHHHHHHHHhhcceeecccCccccchhHHHHHHHHhcCCCcchHHHHHHhccCccccchhhhhhhhhhHHhhhhHHhhc
Confidence 455667778899999999999987633 1112221 11111222222222
Q ss_pred hCCC---cccceeEEEEcCCCHHHHH--------------HHHHhhch--------------------------------
Q 010367 209 KGGF---IANVQCAEVWCPMTKEFFS--------------EYLKKENS-------------------------------- 239 (512)
Q Consensus 209 ~~~~---l~~~~~~~~~~~~~~~~~~--------------~~l~~~~~-------------------------------- 239 (512)
..|- +....+......++.++.. .|+.....
T Consensus 560 a~~klv~Lp~k~i~l~~leLs~~E~~vY~i~~~askk~~kq~L~~~e~~~~~~~~~s~~~~~~~~~e~~~~~~~~pR~~a 639 (901)
T KOG4439|consen 560 ANGKLVNLPEKNIELHELELSGDEAKVYQIMMEASKKLFKQFLLQREDRNNDGGYQSRNRFIGGHDEFGNYYNIGPRFLA 639 (901)
T ss_pred cccccccCcccceEEEEEeecchHHHHHHHHHHHHHHHHHHHHHhhhhhccccCccccchhccccccccccccccchhhh
Confidence 2232 2233344444444443311 22210000
Q ss_pred ----------------HHHHHHh---------------------------------------------------------
Q 010367 240 ----------------KKKQALY--------------------------------------------------------- 246 (512)
Q Consensus 240 ----------------~~~~~~~--------------------------------------------------------- 246 (512)
+.++.-+
T Consensus 640 agsn~~~~s~IL~LLlrLRQ~ccH~~~~k~~ld~~~~~~~g~~~sde~~~e~~~l~el~k~~~T~~~~D~~ed~p~~~~~ 719 (901)
T KOG4439|consen 640 AGSNFEIMSHILVLLLRLRQACCHFGLLKAALDPEEFQMNGGDDSDEEQLEEDNLAELEKNDETDCSDDNCEDLPTAFPD 719 (901)
T ss_pred cCCchhhHHHHHHHHHHHHHHhcCcchhccccCHHHhhhcCcchhhhhhhhhhHHHhhhhcccccccccccccccccchh
Confidence 0000000
Q ss_pred -hc----CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCC-CCc
Q 010367 247 -VM----NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS-RDL 315 (512)
Q Consensus 247 -~~----~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~-~~~ 315 (512)
.. .+-|+....++++.......+|++|.++.+..+..+...++ ...++|.....+|+.+++.|+.. +..
T Consensus 720 q~Fe~~r~S~Ki~~~l~~le~i~~~skeK~viVSQwtsvLniv~~hi~~~g~~y~si~Gqv~vK~Rq~iv~~FN~~k~~~ 799 (901)
T KOG4439|consen 720 QAFEPDRPSCKIAMVLEILETILTSSKEKVVIVSQWTSVLNIVRKHIQKGGHIYTSITGQVLVKDRQEIVDEFNQEKGGA 799 (901)
T ss_pred hhcccccchhHHHHHHHHHHHHhhcccceeeehhHHHHHHHHHHHHHhhCCeeeeeecCccchhHHHHHHHHHHhccCCc
Confidence 00 01233344444433322567899999999999999999884 23589999999999999999876 347
Q ss_pred cEEEEe-CCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHH
Q 010367 316 NTIFLS-KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (512)
Q Consensus 316 ~vlv~t-~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (512)
+|++.+ .+||.|+||..++++|+++-|| ||....|+..|+.|.| |.+.++||++++.||+|..+...
T Consensus 800 rVmLlSLtAGGVGLNL~GaNHlilvDlHW-NPaLEqQAcDRIYR~G-----------QkK~V~IhR~~~~gTvEqrV~~L 867 (901)
T KOG4439|consen 800 RVMLLSLTAGGVGLNLIGANHLILVDLHW-NPALEQQACDRIYRMG-----------QKKDVFIHRLMCKGTVEQRVKSL 867 (901)
T ss_pred eEEEEEEccCcceeeecccceEEEEeccc-CHHHHHHHHHHHHHhc-----------ccCceEEEEEEecCcHHHHHHHH
Confidence 777765 8999999999999999999999 9999999999999999 56679999999999999988766
Q ss_pred HHHHHH
Q 010367 395 RQQFLI 400 (512)
Q Consensus 395 r~~~l~ 400 (512)
+..++.
T Consensus 868 QdkKld 873 (901)
T KOG4439|consen 868 QDKKLD 873 (901)
T ss_pred HHHHHH
Confidence 666664
No 39
>COG0513 SrmB Superfamily II DNA and RNA helicases [DNA replication, recombination, and repair / Transcription / Translation, ribosomal structure and biogenesis]
Probab=100.00 E-value=1.4e-32 Score=289.88 Aligned_cols=303 Identities=20% Similarity=0.218 Sum_probs=223.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-cC--C----C-EEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK--K----S-CLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~~--~----~-~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..+.|.|..+++.++.+. +.+..++||+|||+.++.++.. +. . . +||++||++|+.|..+++..+....
T Consensus 50 ~~pt~IQ~~~IP~~l~g~---Dvi~~A~TGsGKT~Af~lP~l~~l~~~~~~~~~~aLil~PTRELA~Qi~~~~~~~~~~~ 126 (513)
T COG0513 50 EEPTPIQLAAIPLILAGR---DVLGQAQTGTGKTAAFLLPLLQKILKSVERKYVSALILAPTRELAVQIAEELRKLGKNL 126 (513)
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHhcccccCCCceEEECCCHHHHHHHHHHHHHHHhhc
Confidence 579999999999998874 9999999999999998776643 22 1 2 9999999999999999999987554
Q ss_pred -CCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH----HH
Q 010367 96 -DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KV 165 (512)
Q Consensus 96 -~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~----~~ 165 (512)
...+..+.|+... .+....+|+|+||+.+.....+. .+......++|+|||+++....|. .+
T Consensus 127 ~~~~~~~i~GG~~~~~q~~~l~~~~~ivVaTPGRllD~i~~~--------~l~l~~v~~lVlDEADrmLd~Gf~~~i~~I 198 (513)
T COG0513 127 GGLRVAVVYGGVSIRKQIEALKRGVDIVVATPGRLLDLIKRG--------KLDLSGVETLVLDEADRMLDMGFIDDIEKI 198 (513)
T ss_pred CCccEEEEECCCCHHHHHHHHhcCCCEEEECccHHHHHHHcC--------CcchhhcCEEEeccHhhhhcCCCHHHHHHH
Confidence 4567777776431 13345999999999887543321 233357789999999999987554 45
Q ss_pred HHhccc-ceEEEEcccCCCCcchHhhh-H-hhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHH
Q 010367 166 ISLTKS-HCKLGLTATLVREDERITDL-N-FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (512)
Q Consensus 166 l~~~~~-~~~l~LTATp~~~~~~~~~l-~-~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (512)
+..++. .+.+++|||... . +..+ . .+-.|...+....... .....+....+.++
T Consensus 199 ~~~~p~~~qtllfSAT~~~-~--i~~l~~~~l~~p~~i~v~~~~~~--~~~~~i~q~~~~v~------------------ 255 (513)
T COG0513 199 LKALPPDRQTLLFSATMPD-D--IRELARRYLNDPVEIEVSVEKLE--RTLKKIKQFYLEVE------------------ 255 (513)
T ss_pred HHhCCcccEEEEEecCCCH-H--HHHHHHHHccCCcEEEEcccccc--ccccCceEEEEEeC------------------
Confidence 555553 678999999975 2 2222 1 1223433222210000 00111111111111
Q ss_pred HHHhhcCc-chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCcc
Q 010367 243 QALYVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (512)
Q Consensus 243 ~~~~~~~~-~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~ 316 (512)
.. .|+.++..+++... ..++||||+++..++.++..|. +..+||++++.+|.++++.|+++ +++
T Consensus 256 ------~~~~k~~~L~~ll~~~~---~~~~IVF~~tk~~~~~l~~~l~~~g~~~~~lhG~l~q~~R~~~l~~F~~g-~~~ 325 (513)
T COG0513 256 ------SEEEKLELLLKLLKDED---EGRVIVFVRTKRLVEELAESLRKRGFKVAALHGDLPQEERDRALEKFKDG-ELR 325 (513)
T ss_pred ------CHHHHHHHHHHHHhcCC---CCeEEEEeCcHHHHHHHHHHHHHCCCeEEEecCCCCHHHHHHHHHHHHcC-CCC
Confidence 11 36677888887654 4479999999999999999883 45799999999999999999997 999
Q ss_pred EEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeC
Q 010367 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (512)
Q Consensus 317 vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~ 384 (512)
|||||+++++|||+|++++||+|+.|. ++..|+||+||+||.|. .+..+++++.
T Consensus 326 vLVaTDvaaRGiDi~~v~~VinyD~p~-~~e~yvHRiGRTgRaG~-------------~G~ai~fv~~ 379 (513)
T COG0513 326 VLVATDVAARGLDIPDVSHVINYDLPL-DPEDYVHRIGRTGRAGR-------------KGVAISFVTE 379 (513)
T ss_pred EEEEechhhccCCccccceeEEccCCC-CHHHheeccCccccCCC-------------CCeEEEEeCc
Confidence 999999999999999999999999886 99999999999999995 2456677776
No 40
>PRK02362 ski2-like helicase; Provisional
Probab=100.00 E-value=3.1e-32 Score=300.80 Aligned_cols=299 Identities=17% Similarity=0.227 Sum_probs=203.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
.+|+|+|.+|++..+..+ +++++++|||+|||+++..++... ++++|||+|+++|+.|+.++|.++... ..++.
T Consensus 22 ~~l~p~Q~~ai~~~~~~g--~nvlv~APTGSGKTlia~lail~~l~~~~kal~i~P~raLa~q~~~~~~~~~~~-g~~v~ 98 (737)
T PRK02362 22 EELYPPQAEAVEAGLLDG--KNLLAAIPTASGKTLIAELAMLKAIARGGKALYIVPLRALASEKFEEFERFEEL-GVRVG 98 (737)
T ss_pred CcCCHHHHHHHHHHHhCC--CcEEEECCCcchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHHHHhhcC-CCEEE
Confidence 479999999999865554 399999999999999997776442 578999999999999999999987433 45788
Q ss_pred EEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhc----c
Q 010367 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----K 170 (512)
Q Consensus 101 ~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~----~ 170 (512)
.++|+.... ....++|+|+||+.+....++. ..++ .+++++|+||+|.+... .+..++..+ .
T Consensus 99 ~~tGd~~~~~~~l~~~~IiV~Tpek~~~llr~~------~~~l--~~v~lvViDE~H~l~d~~rg~~le~il~rl~~~~~ 170 (737)
T PRK02362 99 ISTGDYDSRDEWLGDNDIIVATSEKVDSLLRNG------APWL--DDITCVVVDEVHLIDSANRGPTLEVTLAKLRRLNP 170 (737)
T ss_pred EEeCCcCccccccCCCCEEEECHHHHHHHHhcC------hhhh--hhcCEEEEECccccCCCcchHHHHHHHHHHHhcCC
Confidence 888875432 2346889999999886543211 1223 56799999999999754 334344333 3
Q ss_pred cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeE-EEEcCCCHHHHHHHHHhhchHHHHHHhhcC
Q 010367 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA-EVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (512)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 249 (512)
..++++||||+.+.++ +...++...+...+ .|+... .+...-... +. . .. . ....
T Consensus 171 ~~qii~lSATl~n~~~----la~wl~~~~~~~~~---------rpv~l~~~v~~~~~~~-~~----~---~~-~--~~~~ 226 (737)
T PRK02362 171 DLQVVALSATIGNADE----LADWLDAELVDSEW---------RPIDLREGVFYGGAIH-FD----D---SQ-R--EVEV 226 (737)
T ss_pred CCcEEEEcccCCCHHH----HHHHhCCCcccCCC---------CCCCCeeeEecCCeec-cc----c---cc-c--cCCC
Confidence 4578999999975332 22233322211111 111110 000000000 00 0 00 0 0011
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----------------------------------------
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------------------------------- 288 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----------------------------------------- 288 (512)
+.+...+..+.+.+ ..+.++||||+++..++.++..|
T Consensus 227 ~~~~~~~~~~~~~~--~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~L~~~l~~ 304 (737)
T PRK02362 227 PSKDDTLNLVLDTL--EEGGQCLVFVSSRRNAEGFAKRAASALKKTLTAAERAELAELAEEIREVSDTETSKDLADCVAK 304 (737)
T ss_pred ccchHHHHHHHHHH--HcCCCeEEEEeCHHHHHHHHHHHHHHhhhcCCHHHHHHHHHHHHHHHhccCccccHHHHHHHHh
Confidence 11222333333333 25779999999999887766554
Q ss_pred CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE----ec-----CCCCCHHHHHHHhhccccc
Q 010367 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS-----SHAGSRRQEAQRLGRILRA 359 (512)
Q Consensus 289 ~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~----~~-----~~~~s~~~~~Q~~GR~~R~ 359 (512)
++.++||++++.+|..+++.|++| .++|||||+++++|+|+|..++||. |+ .+. +..+|.|++||+||.
T Consensus 305 gva~hHagl~~~eR~~ve~~Fr~G-~i~VLvaT~tla~GvnlPa~~VVI~~~~~yd~~~g~~~~-s~~~y~Qm~GRAGR~ 382 (737)
T PRK02362 305 GAAFHHAGLSREHRELVEDAFRDR-LIKVISSTPTLAAGLNLPARRVIIRDYRRYDGGAGMQPI-PVLEYHQMAGRAGRP 382 (737)
T ss_pred CEEeecCCCCHHHHHHHHHHHHcC-CCeEEEechhhhhhcCCCceEEEEecceeecCCCCceeC-CHHHHHHHhhcCCCC
Confidence 345689999999999999999998 9999999999999999999998886 43 233 889999999999999
Q ss_pred CC
Q 010367 360 KG 361 (512)
Q Consensus 360 g~ 361 (512)
|.
T Consensus 383 g~ 384 (737)
T PRK02362 383 GL 384 (737)
T ss_pred CC
Confidence 94
No 41
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=100.00 E-value=2.9e-32 Score=297.03 Aligned_cols=291 Identities=17% Similarity=0.176 Sum_probs=202.8
Q ss_pred CCCCCcHHHHHHHHHHHhCC---CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 22 PHAQPRPYQEKSLSKMFGNG---RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~---~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..++|+++|++|++.+...- ...+.++.+|||+|||++++.++.. .+.+++|++||.+|+.|+.+.|++++...
T Consensus 258 l~f~lt~~Q~~ai~~I~~d~~~~~~~~~Ll~~~TGSGKT~va~~~il~~~~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~ 337 (681)
T PRK10917 258 LPFELTGAQKRVVAEILADLASPKPMNRLLQGDVGSGKTVVAALAALAAIEAGYQAALMAPTEILAEQHYENLKKLLEPL 337 (681)
T ss_pred CCCCCCHHHHHHHHHHHHhhhccCCceEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEeccHHHHHHHHHHHHHHHhhc
Confidence 35789999999999987642 2347899999999999998877643 25689999999999999999999987544
Q ss_pred CCcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHH
Q 010367 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (512)
Q Consensus 96 ~~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l 166 (512)
...+..++|+.+.. ..+..+|+|+|+..+... +.-.++++||+||+|++.......+.
T Consensus 338 ~i~v~ll~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-------------v~~~~l~lvVIDE~Hrfg~~qr~~l~ 404 (681)
T PRK10917 338 GIRVALLTGSLKGKERREILEAIASGEADIVIGTHALIQDD-------------VEFHNLGLVIIDEQHRFGVEQRLALR 404 (681)
T ss_pred CcEEEEEcCCCCHHHHHHHHHHHhCCCCCEEEchHHHhccc-------------chhcccceEEEechhhhhHHHHHHHH
Confidence 46788899986521 135799999999877532 11157899999999998766655544
Q ss_pred HhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHh
Q 010367 167 SLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALY 246 (512)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 246 (512)
..-.....|+|||||...... + ..+|...... .. ....+ ..+ +...+....
T Consensus 405 ~~~~~~~iL~~SATp~prtl~---~-~~~g~~~~s~-i~-~~p~~-r~~--i~~~~~~~~-------------------- 455 (681)
T PRK10917 405 EKGENPHVLVMTATPIPRTLA---M-TAYGDLDVSV-ID-ELPPG-RKP--ITTVVIPDS-------------------- 455 (681)
T ss_pred hcCCCCCEEEEeCCCCHHHHH---H-HHcCCCceEE-Ee-cCCCC-CCC--cEEEEeCcc--------------------
Confidence 433346789999999743211 1 1112111000 00 00000 001 111111100
Q ss_pred hcCcchHHHHHHHHHHhhhcCCCeEEEEecCHH--------HHHHHHHHh-------CCCceeCCCCHHHHHHHHHHhhC
Q 010367 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKL-------RKPMIYGATSHVERTKILQAFKC 311 (512)
Q Consensus 247 ~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~--------~~~~l~~~L-------~~~~i~g~~~~~eR~~il~~F~~ 311 (512)
.+..++..+.+.. ..+.+++|||+.++ .++.+++.| ++..+||++++.+|.+++++|++
T Consensus 456 ----~~~~~~~~i~~~~--~~g~q~~v~~~~ie~s~~l~~~~~~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~F~~ 529 (681)
T PRK10917 456 ----RRDEVYERIREEI--AKGRQAYVVCPLIEESEKLDLQSAEETYEELQEAFPELRVGLLHGRMKPAEKDAVMAAFKA 529 (681)
T ss_pred ----cHHHHHHHHHHHH--HcCCcEEEEEcccccccchhHHHHHHHHHHHHHHCCCCcEEEEeCCCCHHHHHHHHHHHHc
Confidence 0112223333333 45889999998653 233344443 35579999999999999999999
Q ss_pred CCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 312 ~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+ +++|||+|+++++|+|+|++++||+++.+.-+..++.|++||+||.|.
T Consensus 530 g-~~~ILVaT~vie~GiDip~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 578 (681)
T PRK10917 530 G-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGAA 578 (681)
T ss_pred C-CCCEEEECcceeeCcccCCCcEEEEeCCCCCCHHHHHHHhhcccCCCC
Confidence 7 999999999999999999999999997765467899999999999874
No 42
>TIGR00643 recG ATP-dependent DNA helicase RecG.
Probab=100.00 E-value=3.9e-32 Score=294.22 Aligned_cols=291 Identities=16% Similarity=0.174 Sum_probs=203.0
Q ss_pred CCCCCcHHHHHHHHHHHhC---CCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 22 PHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..++|+++|++|++.++.. ..+.+.++.+|||+|||++++.++.. .+.+++|++|+++|+.|+.+.|.+++.-.
T Consensus 232 lpf~lt~~Q~~ai~~I~~~~~~~~~~~~Ll~g~TGSGKT~va~l~il~~~~~g~qvlilaPT~~LA~Q~~~~~~~l~~~~ 311 (630)
T TIGR00643 232 LPFKLTRAQKRVVKEILQDLKSDVPMNRLLQGDVGSGKTLVAALAMLAAIEAGYQVALMAPTEILAEQHYNSLRNLLAPL 311 (630)
T ss_pred CCCCCCHHHHHHHHHHHHHhccCCCccEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEECCHHHHHHHHHHHHHHHhccc
Confidence 3478999999999998765 22336799999999999998766643 35689999999999999999999987544
Q ss_pred CCcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHH
Q 010367 96 DDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI 166 (512)
Q Consensus 96 ~~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l 166 (512)
..++..++|+.... ..+..+|+|+|+..+... +.-.+++++|+||+|++.......+.
T Consensus 312 gi~v~lltg~~~~~~r~~~~~~i~~g~~~IiVgT~~ll~~~-------------~~~~~l~lvVIDEaH~fg~~qr~~l~ 378 (630)
T TIGR00643 312 GIEVALLTGSLKGKRRKELLETIASGQIHLVVGTHALIQEK-------------VEFKRLALVIIDEQHRFGVEQRKKLR 378 (630)
T ss_pred CcEEEEEecCCCHHHHHHHHHHHhCCCCCEEEecHHHHhcc-------------ccccccceEEEechhhccHHHHHHHH
Confidence 56788888875421 135689999999877532 11257899999999998876655555
Q ss_pred Hhcc---cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHH
Q 010367 167 SLTK---SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (512)
Q Consensus 167 ~~~~---~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (512)
.... ..++|+|||||....... ..++..- ....+....+ -.+ ....+....
T Consensus 379 ~~~~~~~~~~~l~~SATp~prtl~l----~~~~~l~--~~~i~~~p~~-r~~--i~~~~~~~~----------------- 432 (630)
T TIGR00643 379 EKGQGGFTPHVLVMSATPIPRTLAL----TVYGDLD--TSIIDELPPG-RKP--ITTVLIKHD----------------- 432 (630)
T ss_pred HhcccCCCCCEEEEeCCCCcHHHHH----HhcCCcc--eeeeccCCCC-CCc--eEEEEeCcc-----------------
Confidence 5443 567899999997532110 1111110 0000000000 001 111111100
Q ss_pred HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHH--------HHHHHHHHh-------CCCceeCCCCHHHHHHHHHH
Q 010367 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKL-------RKPMIYGATSHVERTKILQA 308 (512)
Q Consensus 244 ~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~--------~~~~l~~~L-------~~~~i~g~~~~~eR~~il~~ 308 (512)
.+..++..+.+.. ..+.+++|||+.++ .++.+++.| ++..+||++++.+|.+++++
T Consensus 433 -------~~~~~~~~i~~~l--~~g~q~~v~~~~i~~s~~~~~~~a~~~~~~L~~~~~~~~v~~lHG~m~~~eR~~i~~~ 503 (630)
T TIGR00643 433 -------EKDIVYEFIEEEI--AKGRQAYVVYPLIEESEKLDLKAAEALYERLKKAFPKYNVGLLHGRMKSDEKEAVMEE 503 (630)
T ss_pred -------hHHHHHHHHHHHH--HhCCcEEEEEccccccccchHHHHHHHHHHHHhhCCCCcEEEEeCCCCHHHHHHHHHH
Confidence 0112233333332 35789999998763 344444444 24579999999999999999
Q ss_pred hhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 309 F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|+++ +.+|||+|+++++|+|+|++++||+++.+.-+..++.|+.||+||.|.
T Consensus 504 F~~g-~~~ILVaT~vie~GvDiP~v~~VIi~~~~r~gls~lhQ~~GRvGR~g~ 555 (630)
T TIGR00643 504 FREG-EVDILVATTVIEVGVDVPNATVMVIEDAERFGLSQLHQLRGRVGRGDH 555 (630)
T ss_pred HHcC-CCCEEEECceeecCcccCCCcEEEEeCCCcCCHHHHHHHhhhcccCCC
Confidence 9997 999999999999999999999999997765478899999999999874
No 43
>KOG0354 consensus DEAD-box like helicase [General function prediction only]
Probab=100.00 E-value=6.8e-32 Score=282.15 Aligned_cols=322 Identities=21% Similarity=0.308 Sum_probs=209.9
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
++..+.||+||.+.+...+ .. ++||++|||+|||++|+.++... +.++++++|++-|+.|..+.|..++ .
T Consensus 57 ~p~~~~lR~YQ~eivq~AL-gk---Ntii~lPTG~GKTfIAa~Vm~nh~rw~p~~KiVF~aP~~pLv~QQ~a~~~~~~-~ 131 (746)
T KOG0354|consen 57 YPTNLELRNYQEELVQPAL-GK---NTIIALPTGSGKTFIAAVIMKNHFEWRPKGKVVFLAPTRPLVNQQIACFSIYL-I 131 (746)
T ss_pred ccCcccccHHHHHHhHHhh-cC---CeEEEeecCCCccchHHHHHHHHHhcCCcceEEEeeCCchHHHHHHHHHhhcc-C
Confidence 5677899999999999988 33 89999999999999999999654 3689999999999999998888874 4
Q ss_pred CCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHHHHHHh
Q 010367 95 QDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISL 168 (512)
Q Consensus 95 ~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~~~l~~ 168 (512)
+ ..+....++... ......+|+|+|++.+.+..+.... +.| ..+.++||||||+...+ .|..++..
T Consensus 132 ~-~~~T~~l~~~~~~~~r~~i~~s~~vff~TpQil~ndL~~~~~-----~~l--s~fs~iv~DE~Hra~kn~~Y~~Vmr~ 203 (746)
T KOG0354|consen 132 P-YSVTGQLGDTVPRSNRGEIVASKRVFFRTPQILENDLKSGLH-----DEL--SDFSLIVFDECHRTSKNHPYNNIMRE 203 (746)
T ss_pred c-ccceeeccCccCCCchhhhhcccceEEeChHhhhhhcccccc-----ccc--ceEEEEEEcccccccccccHHHHHHH
Confidence 4 445555554221 1245688999999999987654321 112 56899999999998754 66655533
Q ss_pred c-----ccceEEEEcccCCCCcchHh-hhHhhhCCceeee--------cHH-----------------------------
Q 010367 169 T-----KSHCKLGLTATLVREDERIT-DLNFLIGPKLYEA--------NWL----------------------------- 205 (512)
Q Consensus 169 ~-----~~~~~l~LTATp~~~~~~~~-~l~~l~gp~~~~~--------~~~----------------------------- 205 (512)
+ ...++|||||||...-+... .+..++-. .++ +..
T Consensus 204 ~l~~k~~~~qILgLTASpG~~~~~v~~~I~~L~as--ldvr~~ssi~~~y~~lr~~~~i~v~~~~~~~~~~~~f~~~i~p 281 (746)
T KOG0354|consen 204 YLDLKNQGNQILGLTASPGSKLEQVQNVIDNLCAS--LDVRTESSIKSNYEELREHVQIPVDLSLCERDIEDPFGMIIEP 281 (746)
T ss_pred HHHhhhccccEEEEecCCCccHHHHHHHHHhhhee--cccchhhhhhhhHHHHhccCcccCcHHHhhhhhhhhHHHHHHH
Confidence 2 33489999999985322211 11111110 000 000
Q ss_pred ---HHHhCCCcc---------------------cceeEEEEcCCCHHHHHHH---H---------------H---hhchH
Q 010367 206 ---DLVKGGFIA---------------------NVQCAEVWCPMTKEFFSEY---L---------------K---KENSK 240 (512)
Q Consensus 206 ---~l~~~~~l~---------------------~~~~~~~~~~~~~~~~~~~---l---------------~---~~~~~ 240 (512)
.+...++.. .......|+ +....+..| + . .....
T Consensus 282 ~l~~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~~-f~~~~~~~~~~~ll~~~gir~~~~l~~~~~f~~e~~~ 360 (746)
T KOG0354|consen 282 LLQQLQEEGLIEISDKSTSYEQWVVQAEKAAAPNGPENQRNC-FYALHLRKYNLALLISDGIRFVDALDYLEDFYEEVAL 360 (746)
T ss_pred HHHHHHhcCccccccccccccchhhhhhhhhccCCCccchhh-HHHHHHHHHHHHHHhhcchhhHHHHhhhhhhccccch
Confidence 000000000 000000100 000000000 0 0 00000
Q ss_pred HHH-HH-----------h--------hcC----cchHHHHHHHH-HHhhhcCCCeEEEEecCHHHHHHHHHHhCC-----
Q 010367 241 KKQ-AL-----------Y--------VMN----PNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLRK----- 290 (512)
Q Consensus 241 ~~~-~~-----------~--------~~~----~~k~~~l~~ll-~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~----- 290 (512)
++. .. . ..+ ..|++.+..++ +..+..+..++|||+.++..+..+...|.-
T Consensus 361 ~k~~~~~~e~~~~~~~~~~m~~~~~l~~~~~~~npkle~l~~~l~e~f~~~~dsR~IIFve~R~sa~~l~~~l~~~~~~~ 440 (746)
T KOG0354|consen 361 KKYLKLELEARLIRNFTENMNELEHLSLDPPKENPKLEKLVEILVEQFEQNPDSRTIIFVETRESALALKKWLLQLHELG 440 (746)
T ss_pred hHHHHHHhcchhhHHHHHHHHhhhhhhcCCCccChhHHHHHHHHHHHhhcCCCccEEEEEehHHHHHHHHHHHHhhhhcc
Confidence 000 00 0 001 12555555444 444446778999999999999999988841
Q ss_pred ---Ccee--------CCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhccccc
Q 010367 291 ---PMIY--------GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRA 359 (512)
Q Consensus 291 ---~~i~--------g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~ 359 (512)
..+. -++++.+..++++.|++| +++|||||++|++|||+++++.||-|+... |+...+||.|| ||+
T Consensus 441 ir~~~fiGq~~s~~~~gmtqk~Q~evl~~Fr~G-~~NvLVATSV~EEGLDI~ec~lVIcYd~~s-npIrmIQrrGR-gRa 517 (746)
T KOG0354|consen 441 IKAEIFIGQGKSTQSTGMTQKEQKEVLDKFRDG-EINVLVATSVAEEGLDIGECNLVICYDYSS-NPIRMVQRRGR-GRA 517 (746)
T ss_pred cccceeeeccccccccccCHHHHHHHHHHHhCC-CccEEEEecchhccCCcccccEEEEecCCc-cHHHHHHHhcc-ccc
Confidence 1122 357899999999999998 999999999999999999999999998766 89999999999 998
Q ss_pred C
Q 010367 360 K 360 (512)
Q Consensus 360 g 360 (512)
.
T Consensus 518 ~ 518 (746)
T KOG0354|consen 518 R 518 (746)
T ss_pred c
Confidence 8
No 44
>PRK10689 transcription-repair coupling factor; Provisional
Probab=100.00 E-value=6.2e-32 Score=304.55 Aligned_cols=316 Identities=18% Similarity=0.184 Sum_probs=213.9
Q ss_pred CCCCCCcHHHHHHHHHHHhC---CCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
...++++|.|.+|++.++.. .++.+.++++|||+|||.+++.++.. .+++++|||||++|+.|+.+.|.+++..
T Consensus 596 ~~~~~~T~~Q~~aI~~il~d~~~~~~~d~Ll~a~TGsGKT~val~aa~~~~~~g~qvlvLvPT~eLA~Q~~~~f~~~~~~ 675 (1147)
T PRK10689 596 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENHKQVAVLVPTTLLAQQHYDNFRDRFAN 675 (1147)
T ss_pred hCCCCCCHHHHHHHHHHHHHhhcCCCCCEEEEcCCCcCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHhhcc
Confidence 34578999999999998764 23458999999999999987755532 3678999999999999999999987654
Q ss_pred CCCcEEEEcCCcccc--------c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHH
Q 010367 95 QDDQICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~--------~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~ 165 (512)
.+..+..+++..... + .+..+|+|+|++.+.... . -.+++++|+||+|++.... ...
T Consensus 676 ~~v~i~~l~g~~s~~e~~~il~~l~~g~~dIVVgTp~lL~~~v----------~---~~~L~lLVIDEahrfG~~~-~e~ 741 (1147)
T PRK10689 676 WPVRIEMLSRFRSAKEQTQILAEAAEGKIDILIGTHKLLQSDV----------K---WKDLGLLIVDEEHRFGVRH-KER 741 (1147)
T ss_pred CCceEEEEECCCCHHHHHHHHHHHHhCCCCEEEECHHHHhCCC----------C---HhhCCEEEEechhhcchhH-HHH
Confidence 445676776643211 1 256899999998764321 1 1568999999999996544 334
Q ss_pred HHhcc-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHH
Q 010367 166 ISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (512)
Q Consensus 166 l~~~~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (512)
+..++ ...+|+|||||....... .+..+..+........ +.+ ++. .........
T Consensus 742 lk~l~~~~qvLl~SATpiprtl~l-~~~gl~d~~~I~~~p~-----~r~-~v~--~~~~~~~~~---------------- 796 (1147)
T PRK10689 742 IKAMRADVDILTLTATPIPRTLNM-AMSGMRDLSIIATPPA-----RRL-AVK--TFVREYDSL---------------- 796 (1147)
T ss_pred HHhcCCCCcEEEEcCCCCHHHHHH-HHhhCCCcEEEecCCC-----CCC-Cce--EEEEecCcH----------------
Confidence 44443 457899999997532211 1111122222211110 000 111 111110000
Q ss_pred HhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-------CCCceeCCCCHHHHHHHHHHhhCCCCccE
Q 010367 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDLNT 317 (512)
Q Consensus 245 ~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~il~~F~~~~~~~v 317 (512)
.....++... .++.+++|||+++..++.+++.| ++..+||++++.+|.+++++|+++ +++|
T Consensus 797 ---------~~k~~il~el--~r~gqv~vf~n~i~~ie~la~~L~~~~p~~~v~~lHG~m~q~eRe~im~~Fr~G-k~~V 864 (1147)
T PRK10689 797 ---------VVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNV 864 (1147)
T ss_pred ---------HHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCcEEEEeCCCCHHHHHHHHHHHHhc-CCCE
Confidence 0111222222 24678999999999988888877 244689999999999999999998 9999
Q ss_pred EEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHH
Q 010367 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQ 397 (512)
Q Consensus 318 lv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~ 397 (512)
||||+++++|||+|++++||+.++..-+..+|.|++||+||.|. .+++|.+...+..-...+.+|.+
T Consensus 865 LVaTdIierGIDIP~v~~VIi~~ad~fglaq~~Qr~GRvGR~g~-------------~g~a~ll~~~~~~~~~~~~~rl~ 931 (1147)
T PRK10689 865 LVCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKRLE 931 (1147)
T ss_pred EEECchhhcccccccCCEEEEecCCCCCHHHHHHHhhccCCCCC-------------ceEEEEEeCCCcccCHHHHHHHH
Confidence 99999999999999999999875543377899999999999874 35666555444322234555555
Q ss_pred HHH
Q 010367 398 FLI 400 (512)
Q Consensus 398 ~l~ 400 (512)
.+.
T Consensus 932 ~~~ 934 (1147)
T PRK10689 932 AIA 934 (1147)
T ss_pred HHH
Confidence 443
No 45
>KOG1015 consensus Transcription regulator XNP/ATRX, DEAD-box superfamily [Transcription]
Probab=100.00 E-value=1.3e-32 Score=285.55 Aligned_cols=381 Identities=18% Similarity=0.275 Sum_probs=266.2
Q ss_pred CCCCCccCCCCCCCCcHHHHHHHHHHHhC----------CCCcceEEEcCCCCcHHHHHHHHHHhc-------CCCEEEE
Q 010367 12 VNPDLNMELKPHAQPRPYQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCL 74 (512)
Q Consensus 12 ~~~~~~~~l~~~~~Lr~yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl 74 (512)
..+.+.+.-....+|.|||..++.+|+.. ..+-+|||+.-||+|||++.++++.++ -+++|||
T Consensus 655 ~e~~VqV~rslv~kLKpHQv~GvqFMwd~~~eSlkr~~~~~GsGcILAHcMGLGKTlQVvtflhTvL~c~klg~ktaLvV 734 (1567)
T KOG1015|consen 655 KEPLVQVHRSLVIKLKPHQVDGVQFMWDCCCESLKRTKKSPGSGCILAHCMGLGKTLQVVTFLHTVLLCDKLGFKTALVV 734 (1567)
T ss_pred ccchhhccHhHHhhcCcccccchhHHHHHHHHHHHhhcCCCCcchHHHHhhcccceehhhHHHHHHHHhhccCCceEEEE
Confidence 33444444344568999999999998531 234578999999999999998888654 2689999
Q ss_pred EcChhhHHHHHHHHHHhhCC-C---CCcEEEEcCCcc--c------cccCCCeEEEEchhhhhccCC-Cch----hHHHH
Q 010367 75 ATNAVSVDQWAFQFKLWSTI-Q---DDQICRFTSDSK--E------RFRGNAGVVVTTYNMVAFGGK-RSE----ESEKI 137 (512)
Q Consensus 75 ~P~~~L~~Qw~~~~~~~~~~-~---~~~v~~~~~~~~--~------~~~~~~~Ivv~T~~~l~~~~~-r~~----~~~~~ 137 (512)
||..+ +.+|..+|.+|..- . +..|..+..-.. + .+....+|.|.-|+|+..+.. |.- ....+
T Consensus 735 ~PlNt-~~NW~~EFekWm~~~e~~~~leV~eL~~vkr~e~R~~~L~~W~~~ggVmIiGYdmyRnLa~gr~vk~rk~ke~f 813 (1567)
T KOG1015|consen 735 CPLNT-ALNWMNEFEKWMEGLEDDEKLEVSELATVKRPEERSYMLQRWQEDGGVMIIGYDMYRNLAQGRNVKSRKLKEIF 813 (1567)
T ss_pred cchHH-HHHHHHHHHHhcccccccccceeehhhhccChHHHHHHHHHHHhcCCEEEEehHHHHHHhcccchhhhHHHHHH
Confidence 99887 88999999999742 1 223332222111 0 112445899999999987632 111 13344
Q ss_pred HHHHhcCCccEEEEcCCCCCCch--HHHHHHHhcccceEEEEcccCCCCcchHh-hh----------------HhhhCCc
Q 010367 138 IEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DL----------------NFLIGPK 198 (512)
Q Consensus 138 ~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l----------------~~l~gp~ 198 (512)
...+....+++||+||+|.+++. ...+.+..+...++|+|||||.+++..+. -+ +.++.|+
T Consensus 814 ~k~lvdpGPD~vVCDE~HiLKNeksa~Skam~~irtkRRI~LTGTPLQNNLmEY~CMVnFVKe~lLGs~~EfrNRFvNpI 893 (1567)
T KOG1015|consen 814 NKALVDPGPDFVVCDEGHILKNEKSAVSKAMNSIRTKRRIILTGTPLQNNLMEYHCMVNFVKENLLGSIKEFRNRFVNPI 893 (1567)
T ss_pred HHhccCCCCCeEEecchhhhccchHHHHHHHHHHHhheeEEeecCchhhhhHHHHHHHHhcccccccCcHHHHHhhcCcc
Confidence 55555678899999999999986 66778888899999999999998765422 11 2223332
Q ss_pred e----eeec-----------------HHHHHh-------CCCcccceeEEEEcCCCHH---HHHHHHHh------hchH-
Q 010367 199 L----YEAN-----------------WLDLVK-------GGFIANVQCAEVWCPMTKE---FFSEYLKK------ENSK- 240 (512)
Q Consensus 199 ~----~~~~-----------------~~~l~~-------~~~l~~~~~~~~~~~~~~~---~~~~~l~~------~~~~- 240 (512)
- ...+ +...++ ..+|.|...+.+.+.+++- .|+.|+.- ....
T Consensus 894 ~nGq~~dST~~DVr~Mk~RsHILye~LkgcVqRkDy~Vltk~LPPK~eyVi~vrltelQ~~LYq~yL~h~~~~G~d~eg~ 973 (1567)
T KOG1015|consen 894 QNGQCADSTMVDVRVMKKRSHILYEMLKGCVQRKDYTVLTKFLPPKHEYVIAVRLTELQCKLYQYYLDHLTGVGNDSEGG 973 (1567)
T ss_pred ccCccCCCcHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcccCCCceeEEEEEeccHHHHHHHHHHHhhccccCCccccc
Confidence 1 0000 001111 1356666666677666644 35555520 0000
Q ss_pred --HHHH----------H---------------------------------------------------------------
Q 010367 241 --KKQA----------L--------------------------------------------------------------- 245 (512)
Q Consensus 241 --~~~~----------~--------------------------------------------------------------- 245 (512)
..+. +
T Consensus 974 ~g~~arlf~dfqmlsrIwtHP~~lqL~s~~~enkR~~seddm~~fi~D~sde~e~s~~s~d~~~~~ks~~~s~~Desss~ 1053 (1567)
T KOG1015|consen 974 RGAGARLFQDFQMLSRIWTHPWCLQLDSISKENKRYFSEDDMDEFIADDSDETEMSLSSDDYTKKKKSGKKSKKDESSSG 1053 (1567)
T ss_pred cchhhhHHHHHHHHHHHhcCCCceeechhhhhhcccccccchhccccCCCccccccccccchhhcccccccccccccccc
Confidence 0000 0
Q ss_pred -------------------------------------------------------------------hhcCcchHHHHHH
Q 010367 246 -------------------------------------------------------------------YVMNPNKFRACEF 258 (512)
Q Consensus 246 -------------------------------------------------------------------~~~~~~k~~~l~~ 258 (512)
....++|+.++..
T Consensus 1054 ~~~~g~~ev~k~k~rk~r~~~~~~~~~~g~~~D~~l~ll~dlag~~s~~~d~ppew~kd~v~e~d~~v~~~SgKmiLLle 1133 (1567)
T KOG1015|consen 1054 SGSDGDVEVIKVKNRKSRGGGEGNVDETGNNPDVSLKLLEDLAGSSSNPSDPPPEWYKDFVTEADAEVLEHSGKMILLLE 1133 (1567)
T ss_pred cccCCchhhhhhhhhhccccccCcccccCCCcchHHHHhhcccccccCCCCCchHhHHhhhhhhhhhhhhcCcceehHHH
Confidence 0002456677888
Q ss_pred HHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---------------------------CCceeCCCCHHHHHHHHHHhhC
Q 010367 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKLR---------------------------KPMIYGATSHVERTKILQAFKC 311 (512)
Q Consensus 259 ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---------------------------~~~i~g~~~~~eR~~il~~F~~ 311 (512)
||...+ .-|+|+|||+++...++.|..+|. ...|+|.+...+|....++|++
T Consensus 1134 IL~mce-eIGDKlLVFSQSL~SLdLIe~fLe~v~r~gk~~~d~~~~~~~eGkW~~GkDyyriDGst~s~~R~k~~~~FNd 1212 (1567)
T KOG1015|consen 1134 ILRMCE-EIGDKLLVFSQSLISLDLIEDFLELVSREGKEDKDKPLIYKGEGKWLRGKDYYRLDGSTTSQSRKKWAEEFND 1212 (1567)
T ss_pred HHHHHH-HhcceeEEeecccchhHHHHHHHHhhcccCccccccccccccccceecCCceEEecCcccHHHHHHHHHHhcC
Confidence 887777 789999999999999999988881 1248999999999999999998
Q ss_pred CCCcc---EEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHh
Q 010367 312 SRDLN---TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (512)
Q Consensus 312 ~~~~~---vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (512)
....+ +||+|.+|+.|||+-.||.||+++..| ||.-..|.+=|+.|.| |.+++|+|+|+..+|+|
T Consensus 1213 p~NlRaRl~LISTRAGsLGiNLvAANRVIIfDasW-NPSyDtQSIFRvyRfG-----------QtKPvyiYRfiAqGTmE 1280 (1567)
T KOG1015|consen 1213 PTNLRARLFLISTRAGSLGINLVAANRVIIFDASW-NPSYDTQSIFRVYRFG-----------QTKPVYIYRFIAQGTME 1280 (1567)
T ss_pred cccceeEEEEEeeccCccccceeecceEEEEeccc-CCccchHHHHHHHhhc-----------CcCceeehhhhhcccHH
Confidence 64443 678899999999999999999999888 9999999999999999 77889999999999999
Q ss_pred hHHHHHHHHHHHhcCCceEEe
Q 010367 389 MFYSTKRQQFLIDQGYSFKVI 409 (512)
Q Consensus 389 ~~~~~~r~~~l~~~g~~~~~i 409 (512)
+.+++++ ...|+.+++|+
T Consensus 1281 eKIYkRQ---VTKqsls~RVV 1298 (1567)
T KOG1015|consen 1281 EKIYKRQ---VTKQSLSFRVV 1298 (1567)
T ss_pred HHHHHHH---HhHhhhhhhhh
Confidence 9888654 23344444444
No 46
>PRK13767 ATP-dependent helicase; Provisional
Probab=100.00 E-value=1.3e-31 Score=298.72 Aligned_cols=305 Identities=18% Similarity=0.252 Sum_probs=200.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c-----------CCCEEEEEcChhhHHHHHHHHH--
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----------KKSCLCLATNAVSVDQWAFQFK-- 89 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----------~~~~Lvl~P~~~L~~Qw~~~~~-- 89 (512)
..|+|+|.+|++.++.+. ++++++|||+|||++++.++.. + +..+|||+|+++|+.|+.+.+.
T Consensus 31 ~~~tpiQ~~Ai~~il~g~---nvli~APTGSGKTlaa~Lpil~~l~~~~~~~~~~~~~~~LyIsPtraLa~di~~~L~~~ 107 (876)
T PRK13767 31 GTFTPPQRYAIPLIHEGK---NVLISSPTGSGKTLAAFLAIIDELFRLGREGELEDKVYCLYVSPLRALNNDIHRNLEEP 107 (876)
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCCcHHHHHHHHHHHHHHhhccccCCCCCeEEEEEcCHHHHHHHHHHHHHHH
Confidence 469999999999987765 9999999999999998776642 1 1259999999999999987654
Q ss_pred -----Hhh-----CCCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCC
Q 010367 90 -----LWS-----TIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (512)
Q Consensus 90 -----~~~-----~~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEa 154 (512)
.+. .++...+.+.+|+.... ....++|+||||++|...... ......+ ..+++||+||+
T Consensus 108 l~~i~~~~~~~g~~~~~i~v~v~~Gdt~~~~r~~~l~~~p~IlVtTPE~L~~ll~~----~~~~~~l--~~l~~VVIDE~ 181 (876)
T PRK13767 108 LTEIREIAKERGEELPEIRVAIRTGDTSSYEKQKMLKKPPHILITTPESLAILLNS----PKFREKL--RTVKWVIVDEI 181 (876)
T ss_pred HHHHHHHHHhcCCCcCCeeEEEEcCCCCHHHHHHHHhCCCCEEEecHHHHHHHhcC----hhHHHHH--hcCCEEEEech
Confidence 222 22345678888875421 235689999999998654322 1222333 56789999999
Q ss_pred CCCCchH--------HHHHHHhc-ccceEEEEcccCCCCcchHhhhHhhhCCcee-eecHHHHHhCCCcccceeEEEEcC
Q 010367 155 HVVPAHM--------FRKVISLT-KSHCKLGLTATLVREDERITDLNFLIGPKLY-EANWLDLVKGGFIANVQCAEVWCP 224 (512)
Q Consensus 155 H~~~~~~--------~~~~l~~~-~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~-~~~~~~l~~~~~l~~~~~~~~~~~ 224 (512)
|.+.+.. +.++.... ...++++||||+...+.. ..++.+.... ......++...+..+.... +.++
T Consensus 182 H~l~~~~RG~~l~~~L~rL~~l~~~~~q~IglSATl~~~~~v---a~~L~~~~~~~~~r~~~iv~~~~~k~~~i~-v~~p 257 (876)
T PRK13767 182 HSLAENKRGVHLSLSLERLEELAGGEFVRIGLSATIEPLEEV---AKFLVGYEDDGEPRDCEIVDARFVKPFDIK-VISP 257 (876)
T ss_pred hhhccCccHHHHHHHHHHHHHhcCCCCeEEEEecccCCHHHH---HHHhcCccccCCCCceEEEccCCCccceEE-Eecc
Confidence 9998532 22233333 245789999998642221 1122221000 0000001111111111111 1122
Q ss_pred CCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----------CCce
Q 010367 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----------KPMI 293 (512)
Q Consensus 225 ~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----------~~~i 293 (512)
...- .. ..... ........+..++ ..+.++||||+++..++.++..|. +.++
T Consensus 258 ~~~l-~~----~~~~~-------~~~~l~~~L~~~i-----~~~~~~LVF~nTr~~ae~la~~L~~~~~~~~~~~~i~~h 320 (876)
T PRK13767 258 VDDL-IH----TPAEE-------ISEALYETLHELI-----KEHRTTLIFTNTRSGAERVLYNLRKRFPEEYDEDNIGAH 320 (876)
T ss_pred Cccc-cc----cccch-------hHHHHHHHHHHHH-----hcCCCEEEEeCCHHHHHHHHHHHHHhchhhccccceeee
Confidence 1100 00 00000 0000112222222 246789999999999999888762 4568
Q ss_pred eCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 294 YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 294 ~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
||++++++|..+++.|++| .+++||||+++++|||+|++++||+++.|. |...|+||+||+||.+
T Consensus 321 Hg~ls~~~R~~ve~~fk~G-~i~vLVaTs~Le~GIDip~Vd~VI~~~~P~-sv~~ylQRiGRaGR~~ 385 (876)
T PRK13767 321 HSSLSREVRLEVEEKLKRG-ELKVVVSSTSLELGIDIGYIDLVVLLGSPK-SVSRLLQRIGRAGHRL 385 (876)
T ss_pred eCCCCHHHHHHHHHHHHcC-CCeEEEECChHHhcCCCCCCcEEEEeCCCC-CHHHHHHhcccCCCCC
Confidence 9999999999999999998 899999999999999999999999998876 9999999999999865
No 47
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=100.00 E-value=8.5e-32 Score=263.66 Aligned_cols=360 Identities=18% Similarity=0.244 Sum_probs=247.0
Q ss_pred CCCCcHHHHHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh-c-CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR-I-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~-~-~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
...|-|||++.+.|+.... --.+||++++||.|||+++++++.. . +.++||+||+.+ +.||..++.++++ ...+
T Consensus 182 ii~LL~fQkE~l~Wl~~QE~Ss~~GGiLADEMGMGKTIQtIaLllae~~ra~tLVvaP~VA-lmQW~nEI~~~T~-gslk 259 (791)
T KOG1002|consen 182 IIPLLPFQKEGLAWLTSQEESSVAGGILADEMGMGKTIQTIALLLAEVDRAPTLVVAPTVA-LMQWKNEIERHTS-GSLK 259 (791)
T ss_pred eecchhhhHHHHHHHHHhhhhhhccceehhhhccchHHHHHHHHHhccccCCeeEEccHHH-HHHHHHHHHHhcc-CceE
Confidence 3689999999999875432 2247899999999999999887754 3 569999999887 7899999999976 5568
Q ss_pred EEEEcCCccccc---cCCCeEEEEchhhhhccCCC-------chhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHH
Q 010367 99 ICRFTSDSKERF---RGNAGVVVTTYNMVAFGGKR-------SEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVI 166 (512)
Q Consensus 99 v~~~~~~~~~~~---~~~~~Ivv~T~~~l~~~~~r-------~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l 166 (512)
+.+|+|..+++- -..++++.|||..+-+..++ .+...+-...|-..+|.-||+||||.+++. ...+.+
T Consensus 260 v~~YhG~~R~~nikel~~YDvVLTty~vvEs~yRk~~~GfrrKngv~ke~SlLHsi~~~RiIlDEAH~IK~R~snTArAV 339 (791)
T KOG1002|consen 260 VYIYHGAKRDKNIKELMNYDVVLTTYAVVESVYRKQDYGFRRKNGVDKEKSLLHSIKFYRIILDEAHNIKDRQSNTARAV 339 (791)
T ss_pred EEEEecccccCCHHHhhcCcEEEEecHHHHHHHHhccccccccCCcccccchhhhceeeeeehhhhcccccccccHHHHH
Confidence 899999866532 25689999999988765443 111222233444568889999999999976 333455
Q ss_pred HhcccceEEEEcccCCCCc-chHhhhHhh---------------------------------------------------
Q 010367 167 SLTKSHCKLGLTATLVRED-ERITDLNFL--------------------------------------------------- 194 (512)
Q Consensus 167 ~~~~~~~~l~LTATp~~~~-~~~~~l~~l--------------------------------------------------- 194 (512)
..+...++++|||||.++. +....|..+
T Consensus 340 ~~L~tt~rw~LSGTPLQNrigElySLiRFL~i~Pfsyyfc~~cdc~~~~~~ftdr~~c~~c~h~~m~h~~~~n~~mlk~I 419 (791)
T KOG1002|consen 340 FALETTYRWCLSGTPLQNRIGELYSLIRFLNINPFSYYFCTKCDCASLDWKFTDRMHCDHCSHNIMQHTCFFNHFMLKPI 419 (791)
T ss_pred HhhHhhhhhhccCCcchhhHHHHHHHHHHHccCcchhhhhhhccccccceeecccccCCcccchhhhhhhhhcccccccc
Confidence 5667889999999998742 110000000
Q ss_pred -----hCC--------------------------------ceeee----------------------cHHHHHhCCCcc-
Q 010367 195 -----IGP--------------------------------KLYEA----------------------NWLDLVKGGFIA- 214 (512)
Q Consensus 195 -----~gp--------------------------------~~~~~----------------------~~~~l~~~~~l~- 214 (512)
.|| .+... .....++.|.+-
T Consensus 420 qkfG~eGpGk~af~~~h~llk~ImlrrTkl~RAdDLgLPPRiv~vRrD~fn~eE~D~YeSLY~dSkrkfntyieeGvvlN 499 (791)
T KOG1002|consen 420 QKFGVEGPGKEAFNNIHTLLKNIMLRRTKLERADDLGLPPRIVTVRRDFFNEEEKDLYESLYKDSKRKFNTYIEEGVVLN 499 (791)
T ss_pred hhhcccCchHHHHHHHHHHHHHHHHHHhhcccccccCCCccceeeehhhhhhHHHHHHHHHHHhhHHhhhhHHhhhhhhh
Confidence 000 00000 000111111100
Q ss_pred -------------------------------cceeEEEEcCCCHHHHHHHHHhh-----------------ch-------
Q 010367 215 -------------------------------NVQCAEVWCPMTKEFFSEYLKKE-----------------NS------- 239 (512)
Q Consensus 215 -------------------------------~~~~~~~~~~~~~~~~~~~l~~~-----------------~~------- 239 (512)
.-....+.|.+..+..++|+... ..
T Consensus 500 NYAnIF~LitRmRQ~aDHP~LVl~S~~~n~~~enk~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP 579 (791)
T KOG1002|consen 500 NYANIFTLITRMRQAADHPDLVLYSANANLPDENKGEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCP 579 (791)
T ss_pred hHHHHHHHHHHHHHhccCcceeeehhhcCCCccccCceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCc
Confidence 01111333433222222222110 00
Q ss_pred -----------------------HHHHHHh------hcCcchHHHHHHHHHHhh-hcCCCeEEEEecCHHHHHHHHHHhC
Q 010367 240 -----------------------KKKQALY------VMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR 289 (512)
Q Consensus 240 -----------------------~~~~~~~------~~~~~k~~~l~~ll~~~~-~~~g~k~iVf~~~~~~~~~l~~~L~ 289 (512)
+....+. ...+.|++++.+-+.+.. ..+.-|.|||+++...++.+.-.|+
T Consensus 580 ~C~i~LsiDlse~alek~~l~~Fk~sSIlnRinm~~~qsSTKIEAL~EEl~~l~~rd~t~KsIVFSQFTSmLDLi~~rL~ 659 (791)
T KOG1002|consen 580 VCHIGLSIDLSEPALEKTDLKGFKASSILNRINMDDWQSSTKIEALVEELYFLRERDRTAKSIVFSQFTSMLDLIEWRLG 659 (791)
T ss_pred cccccccccccchhhhhcchhhhhhHHHhhhcchhhhcchhHHHHHHHHHHHHHHcccchhhhhHHHHHHHHHHHHHHhh
Confidence 0011111 123457777666554443 2345689999999999999998886
Q ss_pred CC-----ceeCCCCHHHHHHHHHHhhCCCCccEEEEe-CCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCc
Q 010367 290 KP-----MIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363 (512)
Q Consensus 290 ~~-----~i~g~~~~~eR~~il~~F~~~~~~~vlv~t-~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~ 363 (512)
.+ -+.|+|++..|...++.|++++.++|++.+ ++||..+|+..|+.|+++++|| ||....|+.+|+||+|
T Consensus 660 kaGfscVkL~GsMs~~ardatik~F~nd~~c~vfLvSLkAGGVALNLteASqVFmmDPWW-NpaVe~Qa~DRiHRIG--- 735 (791)
T KOG1002|consen 660 KAGFSCVKLVGSMSPAARDATIKYFKNDIDCRVFLVSLKAGGVALNLTEASQVFMMDPWW-NPAVEWQAQDRIHRIG--- 735 (791)
T ss_pred ccCceEEEeccCCChHHHHHHHHHhccCCCeEEEEEEeccCceEeeechhceeEeecccc-cHHHHhhhhhhHHhhc---
Confidence 43 489999999999999999999899987765 9999999999999999998887 9999999999999999
Q ss_pred cccccCCCCceeEEEEEEEeCCcHhhHHHHHHH
Q 010367 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQ 396 (512)
Q Consensus 364 ~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~ 396 (512)
|-+++.+.+++-++++|+.+-..+.
T Consensus 736 --------Q~rPvkvvrf~iEnsiE~kIieLQe 760 (791)
T KOG1002|consen 736 --------QYRPVKVVRFCIENSIEEKIIELQE 760 (791)
T ss_pred --------CccceeEEEeehhccHHHHHHHHHH
Confidence 6778999999999999997764433
No 48
>PRK00254 ski2-like helicase; Provisional
Probab=99.98 E-value=1.3e-30 Score=287.27 Aligned_cols=297 Identities=18% Similarity=0.227 Sum_probs=196.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.+|+|+|.+++...+..+ ++.++++|||+|||+++..++.. .++++|+|+|+++|+.|+.++|..|... ...|
T Consensus 22 ~~l~~~Q~~ai~~~~~~g--~nvlv~apTGsGKT~~~~l~il~~l~~~~~~~l~l~P~~aLa~q~~~~~~~~~~~-g~~v 98 (720)
T PRK00254 22 EELYPPQAEALKSGVLEG--KNLVLAIPTASGKTLVAEIVMVNKLLREGGKAVYLVPLKALAEEKYREFKDWEKL-GLRV 98 (720)
T ss_pred CCCCHHHHHHHHHHHhCC--CcEEEECCCCcHHHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHHHHHHHHhhc-CCEE
Confidence 479999999999755554 39999999999999999666532 2568999999999999999999987432 4567
Q ss_pred EEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcc-cc
Q 010367 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SH 172 (512)
Q Consensus 100 ~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~-~~ 172 (512)
..++|+.... ..+.++|+|+|++.+....++. ..++ .++++||+||+|.+... .+..++..+. ..
T Consensus 99 ~~~~Gd~~~~~~~~~~~~IiV~Tpe~~~~ll~~~------~~~l--~~l~lvViDE~H~l~~~~rg~~le~il~~l~~~~ 170 (720)
T PRK00254 99 AMTTGDYDSTDEWLGKYDIIIATAEKFDSLLRHG------SSWI--KDVKLVVADEIHLIGSYDRGATLEMILTHMLGRA 170 (720)
T ss_pred EEEeCCCCCchhhhccCCEEEEcHHHHHHHHhCC------chhh--hcCCEEEEcCcCccCCccchHHHHHHHHhcCcCC
Confidence 8888875422 2356889999999876543221 1223 56899999999999754 4444554443 45
Q ss_pred eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeE-EEEcCCCHHHHHHHHHhhchHHHHHHhhcCcc
Q 010367 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA-EVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 251 (512)
++++||||+.... ++...++...+...+ .++... .+... ... +. ......+ . ...
T Consensus 171 qiI~lSATl~n~~----~la~wl~~~~~~~~~---------rpv~l~~~~~~~-~~~----~~-~~~~~~~-~----~~~ 226 (720)
T PRK00254 171 QILGLSATVGNAE----ELAEWLNAELVVSDW---------RPVKLRKGVFYQ-GFL----FW-EDGKIER-F----PNS 226 (720)
T ss_pred cEEEEEccCCCHH----HHHHHhCCccccCCC---------CCCcceeeEecC-Cee----ec-cCcchhc-c----hHH
Confidence 7899999996432 223333322211110 111110 00000 000 00 0000000 0 000
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh--------------------------------------CCCce
Q 010367 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL--------------------------------------RKPMI 293 (512)
Q Consensus 252 k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L--------------------------------------~~~~i 293 (512)
....+..++ ..+.++||||+++..++.++..| ++.++
T Consensus 227 ~~~~~~~~i-----~~~~~vLVF~~sr~~~~~~a~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~h 301 (720)
T PRK00254 227 WESLVYDAV-----KKGKGALVFVNTRRSAEKEALELAKKIKRFLTKPELRALKELADSLEENPTNEKLKKALRGGVAFH 301 (720)
T ss_pred HHHHHHHHH-----HhCCCEEEEEcChHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHhcCCCcHHHHHHHhhCEEEe
Confidence 011222222 24679999999998876655333 35679
Q ss_pred eCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEe-------cCCCCCHHHHHHHhhcccccCC
Q 010367 294 YGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI-------SSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 294 ~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~-------~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
||++++++|..+.+.|++| .++|||||+++++|+|+|..++||.- ..+.-+...+.||+||+||.|.
T Consensus 302 Hagl~~~eR~~ve~~F~~G-~i~VLvaT~tLa~Gvnipa~~vVI~~~~~~~~~~~~~~~~~~~~Qm~GRAGR~~~ 375 (720)
T PRK00254 302 HAGLGRTERVLIEDAFREG-LIKVITATPTLSAGINLPAFRVIIRDTKRYSNFGWEDIPVLEIQQMMGRAGRPKY 375 (720)
T ss_pred CCCCCHHHHHHHHHHHHCC-CCeEEEeCcHHhhhcCCCceEEEECCceEcCCCCceeCCHHHHHHhhhccCCCCc
Confidence 9999999999999999998 99999999999999999998888841 1111145689999999999884
No 49
>KOG0345 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.98 E-value=2.9e-31 Score=259.31 Aligned_cols=294 Identities=19% Similarity=0.218 Sum_probs=213.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC---------C--CEEEEEcChhhHHHHHHHHHHhh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK---------K--SCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~---------~--~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
-+..|.|..+++.++++. +.++-++||+|||++++.++...- + -.|||+||++|+.|.......|.
T Consensus 27 ~~mTpVQa~tIPlll~~K---DVvveavTGSGKTlAFllP~le~i~rr~~~~~~~~vgalIIsPTRELa~QI~~V~~~F~ 103 (567)
T KOG0345|consen 27 EKMTPVQAATIPLLLKNK---DVVVEAVTGSGKTLAFLLPMLEIIYRREAKTPPGQVGALIISPTRELARQIREVAQPFL 103 (567)
T ss_pred cccCHHHHhhhHHHhcCC---ceEEEcCCCCCchhhHHHHHHHHHHhhccCCCccceeEEEecCcHHHHHHHHHHHHHHH
Confidence 368899999999988886 899999999999999998885431 1 48999999999999998877765
Q ss_pred C-CCCCcEEEEcCCcccc------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH--
Q 010367 93 T-IQDDQICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-- 163 (512)
Q Consensus 93 ~-~~~~~v~~~~~~~~~~------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~-- 163 (512)
. ++..++..+.|+..-. ....++|+|+||+.|.....|. ...+.-+...++|+|||+++....|.
T Consensus 104 ~~l~~l~~~l~vGG~~v~~Di~~fkee~~nIlVgTPGRL~di~~~~------~~~l~~rsLe~LVLDEADrLldmgFe~~ 177 (567)
T KOG0345|consen 104 EHLPNLNCELLVGGRSVEEDIKTFKEEGPNILVGTPGRLLDILQRE------AEKLSFRSLEILVLDEADRLLDMGFEAS 177 (567)
T ss_pred HhhhccceEEEecCccHHHHHHHHHHhCCcEEEeCchhHHHHHhch------hhhccccccceEEecchHhHhcccHHHH
Confidence 3 3566677777774311 1356889999999887654331 22333367889999999999987665
Q ss_pred --HHHHhcccceEE-EEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcC---CCHHHHHHHHHhh
Q 010367 164 --KVISLTKSHCKL-GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP---MTKEFFSEYLKKE 237 (512)
Q Consensus 164 --~~l~~~~~~~~l-~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~---~~~~~~~~~l~~~ 237 (512)
.++..++..++- ++|||-..+.+. +...|.-.++.+..-... .+......|+
T Consensus 178 ~n~ILs~LPKQRRTGLFSATq~~~v~d-------------------L~raGLRNpv~V~V~~k~~~~tPS~L~~~Y~--- 235 (567)
T KOG0345|consen 178 VNTILSFLPKQRRTGLFSATQTQEVED-------------------LARAGLRNPVRVSVKEKSKSATPSSLALEYL--- 235 (567)
T ss_pred HHHHHHhcccccccccccchhhHHHHH-------------------HHHhhccCceeeeecccccccCchhhcceee---
Confidence 456666655554 469998754332 223333333332211111 1111222222
Q ss_pred chHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-------CCCceeCCCCHHHHHHHHHHhh
Q 010367 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFK 310 (512)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~il~~F~ 310 (512)
.+....|+..|..++... ...|+|||..+....+.+...| .+..+||.+++..|..++..|.
T Consensus 236 --------v~~a~eK~~~lv~~L~~~---~~kK~iVFF~TCasVeYf~~~~~~~l~~~~i~~iHGK~~q~~R~k~~~~F~ 304 (567)
T KOG0345|consen 236 --------VCEADEKLSQLVHLLNNN---KDKKCIVFFPTCASVEYFGKLFSRLLKKREIFSIHGKMSQKARAKVLEAFR 304 (567)
T ss_pred --------EecHHHHHHHHHHHHhcc---ccccEEEEecCcchHHHHHHHHHHHhCCCcEEEecchhcchhHHHHHHHHH
Confidence 111223556666666543 3689999998888888877766 2335999999999999999999
Q ss_pred CCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 311 ~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+. .-.+|+||+++++|||+|+++.||++|+|. ++..++||.||++|.|+
T Consensus 305 ~~-~~~vl~~TDVaARGlDip~iD~VvQ~DpP~-~~~~FvHR~GRTaR~gr 353 (567)
T KOG0345|consen 305 KL-SNGVLFCTDVAARGLDIPGIDLVVQFDPPK-DPSSFVHRCGRTARAGR 353 (567)
T ss_pred hc-cCceEEeehhhhccCCCCCceEEEecCCCC-ChhHHHhhcchhhhccC
Confidence 96 778999999999999999999999999887 99999999999999995
No 50
>KOG0333 consensus U5 snRNP-like RNA helicase subunit [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=258.22 Aligned_cols=310 Identities=18% Similarity=0.201 Sum_probs=218.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH----Hhc-----------CCCEEEEEcChhhHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CRI-----------KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~~~-----------~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
..+.|.|+.|+.-++++. +.|.+++||+|||...+..+ ..+ +...+|++|+++|++|...|-
T Consensus 266 ~eptpIqR~aipl~lQ~r---D~igvaETgsGktaaf~ipLl~~IsslP~~~~~en~~~gpyaiilaptReLaqqIeeEt 342 (673)
T KOG0333|consen 266 KEPTPIQRQAIPLGLQNR---DPIGVAETGSGKTAAFLIPLLIWISSLPPMARLENNIEGPYAIILAPTRELAQQIEEET 342 (673)
T ss_pred CCCchHHHhhccchhccC---CeeeEEeccCCccccchhhHHHHHHcCCCcchhhhcccCceeeeechHHHHHHHHHHHH
Confidence 468899999999888775 89999999999997765443 222 346999999999999999999
Q ss_pred HHhhCCCCCcEEEEcCCcc-c----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---
Q 010367 89 KLWSTIQDDQICRFTSDSK-E----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--- 160 (512)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~-~----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--- 160 (512)
.+|+.....++..+.|+.. + .+...+.|+|+||..|..... ...-. ....-+||+|||+++...
T Consensus 343 ~kf~~~lg~r~vsvigg~s~EEq~fqls~gceiviatPgrLid~Le------nr~lv--l~qctyvvldeadrmiDmgfE 414 (673)
T KOG0333|consen 343 NKFGKPLGIRTVSVIGGLSFEEQGFQLSMGCEIVIATPGRLIDSLE------NRYLV--LNQCTYVVLDEADRMIDMGFE 414 (673)
T ss_pred HHhcccccceEEEEecccchhhhhhhhhccceeeecCchHHHHHHH------HHHHH--hccCceEeccchhhhhccccc
Confidence 9886554455555555432 2 245789999999998876532 11222 256779999999999854
Q ss_pred -HHHHHHHhccc--------------------------ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCc
Q 010367 161 -MFRKVISLTKS--------------------------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI 213 (512)
Q Consensus 161 -~~~~~l~~~~~--------------------------~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l 213 (512)
.+.+++..++. ...+.||||.....+.+.. ..+..|.....+ .+
T Consensus 415 ~dv~~iL~~mPssn~k~~tde~~~~~~~~~~~~~~k~yrqT~mftatm~p~verlar-~ylr~pv~vtig--------~~ 485 (673)
T KOG0333|consen 415 PDVQKILEQMPSSNAKPDTDEKEGEERVRKNFSSSKKYRQTVMFTATMPPAVERLAR-SYLRRPVVVTIG--------SA 485 (673)
T ss_pred HHHHHHHHhCCccccCCCccchhhHHHHHhhcccccceeEEEEEecCCChHHHHHHH-HHhhCCeEEEec--------cC
Confidence 45556655532 1346777776544333211 111222222111 11
Q ss_pred ccceeEEEEcCCCHHHHHHHHHhhchHHHH-HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---
Q 010367 214 ANVQCAEVWCPMTKEFFSEYLKKENSKKKQ-ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--- 289 (512)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~--- 289 (512)
. ....+..+ ...+....|+..+..+++.. ....+|||+|+++.++.+|+.|.
T Consensus 486 g---------------------k~~~rveQ~v~m~~ed~k~kkL~eil~~~---~~ppiIIFvN~kk~~d~lAk~LeK~g 541 (673)
T KOG0333|consen 486 G---------------------KPTPRVEQKVEMVSEDEKRKKLIEILESN---FDPPIIIFVNTKKGADALAKILEKAG 541 (673)
T ss_pred C---------------------CCccchheEEEEecchHHHHHHHHHHHhC---CCCCEEEEEechhhHHHHHHHHhhcc
Confidence 0 00011111 11222334556666666543 25689999999999999999994
Q ss_pred --CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccc
Q 010367 290 --KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367 (512)
Q Consensus 290 --~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~ 367 (512)
+..+||+-++++|+-+|+.|+.+ ..+|||||+++++|||+|++++||+|+... |...|.||+||+||+|+
T Consensus 542 ~~~~tlHg~k~qeQRe~aL~~fr~~-t~dIlVaTDvAgRGIDIpnVSlVinydmak-sieDYtHRIGRTgRAGk------ 613 (673)
T KOG0333|consen 542 YKVTTLHGGKSQEQRENALADFREG-TGDILVATDVAGRGIDIPNVSLVINYDMAK-SIEDYTHRIGRTGRAGK------ 613 (673)
T ss_pred ceEEEeeCCccHHHHHHHHHHHHhc-CCCEEEEecccccCCCCCccceeeecchhh-hHHHHHHHhcccccccc------
Confidence 34699999999999999999998 899999999999999999999999998876 99999999999999995
Q ss_pred cCCCCceeEEEEEEEeCCcHhhHHH
Q 010367 368 AGGKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 368 ~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
.+...++++....+.+|.
T Consensus 614 -------~GtaiSflt~~dt~v~yd 631 (673)
T KOG0333|consen 614 -------SGTAISFLTPADTAVFYD 631 (673)
T ss_pred -------CceeEEEeccchhHHHHH
Confidence 244556777666555443
No 51
>PRK01172 ski2-like helicase; Provisional
Probab=99.97 E-value=2e-30 Score=284.48 Aligned_cols=296 Identities=17% Similarity=0.183 Sum_probs=197.8
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
..++|+|+|.++++.+..+. +.++++|||+|||+++..++... ++++++++|+++|+.|+.++|.++... ...
T Consensus 19 ~~~~l~~~Q~~ai~~l~~~~---nvlv~apTGSGKTl~a~lail~~l~~~~k~v~i~P~raLa~q~~~~~~~l~~~-g~~ 94 (674)
T PRK01172 19 NDFELYDHQRMAIEQLRKGE---NVIVSVPTAAGKTLIAYSAIYETFLAGLKSIYIVPLRSLAMEKYEELSRLRSL-GMR 94 (674)
T ss_pred CCCCCCHHHHHHHHHHhcCC---cEEEECCCCchHHHHHHHHHHHHHHhCCcEEEEechHHHHHHHHHHHHHHhhc-CCe
Confidence 45789999999999976554 89999999999999988776442 578999999999999999999986432 346
Q ss_pred EEEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhc---
Q 010367 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT--- 169 (512)
Q Consensus 99 v~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~--- 169 (512)
+...+|+.... .....+|+|+|++.+....++. ...+ .++++||+||+|++... .+..++..+
T Consensus 95 v~~~~G~~~~~~~~~~~~dIiv~Tpek~~~l~~~~------~~~l--~~v~lvViDEaH~l~d~~rg~~le~ll~~~~~~ 166 (674)
T PRK01172 95 VKISIGDYDDPPDFIKRYDVVILTSEKADSLIHHD------PYII--NDVGLIVADEIHIIGDEDRGPTLETVLSSARYV 166 (674)
T ss_pred EEEEeCCCCCChhhhccCCEEEECHHHHHHHHhCC------hhHH--hhcCEEEEecchhccCCCccHHHHHHHHHHHhc
Confidence 66777764321 2246799999999776543221 1122 56899999999999754 344444332
Q ss_pred -ccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhc
Q 010367 170 -KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (512)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 248 (512)
...++++||||+.+.. ++...++...+...+ .-.+......... . .+. ...
T Consensus 167 ~~~~riI~lSATl~n~~----~la~wl~~~~~~~~~-------r~vpl~~~i~~~~--~----~~~-~~~---------- 218 (674)
T PRK01172 167 NPDARILALSATVSNAN----ELAQWLNASLIKSNF-------RPVPLKLGILYRK--R----LIL-DGY---------- 218 (674)
T ss_pred CcCCcEEEEeCccCCHH----HHHHHhCCCccCCCC-------CCCCeEEEEEecC--e----eee-ccc----------
Confidence 2347899999996432 233333322211110 0111111111100 0 000 000
Q ss_pred CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh------------------------------CCCceeCCCC
Q 010367 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------RKPMIYGATS 298 (512)
Q Consensus 249 ~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L------------------------------~~~~i~g~~~ 298 (512)
...... +..++.... ..+.++||||+++..++.++..| ++.++||+++
T Consensus 219 ~~~~~~-~~~~i~~~~-~~~~~vLVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~L~~~l~~gv~~~hagl~ 296 (674)
T PRK01172 219 ERSQVD-INSLIKETV-NDGGQVLVFVSSRKNAEDYAEMLIQHFPEFNDFKVSSENNNVYDDSLNEMLPHGVAFHHAGLS 296 (674)
T ss_pred cccccc-HHHHHHHHH-hCCCcEEEEeccHHHHHHHHHHHHHhhhhcccccccccccccccHHHHHHHhcCEEEecCCCC
Confidence 000011 122232222 35779999999999988888766 2345899999
Q ss_pred HHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCC--------CCCHHHHHHHhhcccccCC
Q 010367 299 HVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH--------AGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 299 ~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~--------~~s~~~~~Q~~GR~~R~g~ 361 (512)
+++|..+++.|++| .++|||+|+++++|+|+|...+|| .+.+ +-+..++.||+||+||.|.
T Consensus 297 ~~eR~~ve~~f~~g-~i~VLvaT~~la~Gvnipa~~VII-~~~~~~~~~~~~~~s~~~~~Qm~GRAGR~g~ 365 (674)
T PRK01172 297 NEQRRFIEEMFRNR-YIKVIVATPTLAAGVNLPARLVIV-RDITRYGNGGIRYLSNMEIKQMIGRAGRPGY 365 (674)
T ss_pred HHHHHHHHHHHHcC-CCeEEEecchhhccCCCcceEEEE-cCceEeCCCCceeCCHHHHHHHhhcCCCCCC
Confidence 99999999999997 999999999999999999755554 3211 1278899999999999984
No 52
>KOG0328 consensus Predicted ATP-dependent RNA helicase FAL1, involved in rRNA maturation, DEAD-box superfamily [Translation, ribosomal structure and biogenesis]
Probab=99.97 E-value=6.9e-31 Score=241.20 Aligned_cols=307 Identities=18% Similarity=0.183 Sum_probs=226.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHH-HHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGV-SAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i-~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
+|-..|..|+..++.+. +.|..+..|+|||.++. .++..+ .-.+||+.|+++|+.|..+.+....+.-..+
T Consensus 49 kPS~IQqrAi~~IlkGr---dViaQaqSGTGKTa~~si~vlq~~d~~~r~tQ~lilsPTRELa~Qi~~vi~alg~~mnvq 125 (400)
T KOG0328|consen 49 KPSAIQQRAIPQILKGR---DVIAQAQSGTGKTATFSISVLQSLDISVRETQALILSPTRELAVQIQKVILALGDYMNVQ 125 (400)
T ss_pred CchHHHhhhhhhhhccc---ceEEEecCCCCceEEEEeeeeeecccccceeeEEEecChHHHHHHHHHHHHHhcccccce
Confidence 45567999999998774 89999999999998743 222222 2479999999999999999988876555556
Q ss_pred EEEEcCCcc-----ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHH----HHHhc
Q 010367 99 ICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT 169 (512)
Q Consensus 99 v~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~----~l~~~ 169 (512)
+....|+.. .++..+.+++..||+.+....+| ..|+.+...++|+|||+.+.++.|.. +...+
T Consensus 126 ~hacigg~n~gedikkld~G~hvVsGtPGrv~dmikr--------~~L~tr~vkmlVLDEaDemL~kgfk~Qiydiyr~l 197 (400)
T KOG0328|consen 126 CHACIGGKNLGEDIKKLDYGQHVVSGTPGRVLDMIKR--------RSLRTRAVKMLVLDEADEMLNKGFKEQIYDIYRYL 197 (400)
T ss_pred EEEEecCCccchhhhhhcccceEeeCCCchHHHHHHh--------ccccccceeEEEeccHHHHHHhhHHHHHHHHHHhC
Confidence 666666544 34567789999999988766443 34445788999999999999876653 45555
Q ss_pred c-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhc
Q 010367 170 K-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (512)
Q Consensus 170 ~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 248 (512)
+ ..+++.+|||.+.+-.. ..+.-.-.|+.+....-.++.+-...|. +...
T Consensus 198 p~~~Qvv~~SATlp~eile-------------------mt~kfmtdpvrilvkrdeltlEgIKqf~----------v~ve 248 (400)
T KOG0328|consen 198 PPGAQVVLVSATLPHEILE-------------------MTEKFMTDPVRILVKRDELTLEGIKQFF----------VAVE 248 (400)
T ss_pred CCCceEEEEeccCcHHHHH-------------------HHHHhcCCceeEEEecCCCchhhhhhhe----------eeec
Confidence 5 56889999999742211 1111122233333333344444333333 1111
Q ss_pred Ccc-hHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 249 NPN-KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 249 ~~~-k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
..+ |+..+-.|-+.+. -.+++|||+++...+.+.+++. +..+||+++++||+++++.|+.+ ..+||++|+
T Consensus 249 ~EewKfdtLcdLYd~Lt---ItQavIFcnTk~kVdwLtekm~~~nftVssmHGDm~qkERd~im~dFRsg-~SrvLitTD 324 (400)
T KOG0328|consen 249 KEEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMEQKERDKIMNDFRSG-KSRVLITTD 324 (400)
T ss_pred hhhhhHhHHHHHhhhhe---hheEEEEecccchhhHHHHHHHhhCceeeeccCCcchhHHHHHHHHhhcC-CceEEEEec
Confidence 122 5667777776654 5689999999999999999983 45699999999999999999998 999999999
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhh
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (512)
+-++|+|+|.++.||+|+-|. ++..|+||+||.||.|+ ..+..++|..+..+.
T Consensus 325 VwaRGiDv~qVslviNYDLP~-nre~YIHRIGRSGRFGR-------------kGvainFVk~~d~~~ 377 (400)
T KOG0328|consen 325 VWARGIDVQQVSLVINYDLPN-NRELYIHRIGRSGRFGR-------------KGVAINFVKSDDLRI 377 (400)
T ss_pred hhhccCCcceeEEEEecCCCc-cHHHHhhhhccccccCC-------------cceEEEEecHHHHHH
Confidence 999999999999999998886 99999999999999996 356677877655443
No 53
>KOG0350 consensus DEAD-box ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=7.8e-31 Score=257.79 Aligned_cols=326 Identities=18% Similarity=0.190 Sum_probs=217.6
Q ss_pred CCCCcHHHHHHHHHHHhCC------CCcceEEEcCCCCcHHHHHHHHHHhc-C------CCEEEEEcChhhHHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGNG------RARSGIIVLPCGAGKSLVGVSAACRI-K------KSCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~------~~~~~il~~~tG~GKTl~~i~~i~~~-~------~~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
...++|.|...+.+++... +.++.++.+|||+|||+++..+|-.+ . -+++||+|+++|+.|.++.|.
T Consensus 157 is~~FPVQ~aVlp~ll~~~~~p~~~r~rDIcV~ApTGSGKTLaY~iPIVQ~L~~R~v~~LRavVivPtr~L~~QV~~~f~ 236 (620)
T KOG0350|consen 157 ISRLFPVQYAVLPSLLEEIRSPPPSRPRDICVNAPTGSGKTLAYVIPIVQLLSSRPVKRLRAVVIVPTRELALQVYDTFK 236 (620)
T ss_pred cccccchHHHHHHHHHHhhcCCCCCCCCceEEecCCCCCceeeehhHHHHHHccCCccceEEEEEeeHHHHHHHHHHHHH
Confidence 3578999999999986532 46788999999999999987777443 2 279999999999999999999
Q ss_pred HhhCCCCCcEEEEcCCccc-----cc-c----CCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc
Q 010367 90 LWSTIQDDQICRFTSDSKE-----RF-R----GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (512)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~-----~~-~----~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~ 159 (512)
.|..-....|+..+|...- ++ . ...+|+|+||+.|...... ...|...+..++|||||+++..
T Consensus 237 ~~~~~tgL~V~~~sgq~sl~~E~~qL~~~~~~~~~DIlVaTPGRLVDHl~~-------~k~f~Lk~LrfLVIDEADRll~ 309 (620)
T KOG0350|consen 237 RLNSGTGLAVCSLSGQNSLEDEARQLASDPPECRIDILVATPGRLVDHLNN-------TKSFDLKHLRFLVIDEADRLLD 309 (620)
T ss_pred HhccCCceEEEecccccchHHHHHHHhcCCCccccceEEcCchHHHHhccC-------CCCcchhhceEEEechHHHHHH
Confidence 9987776778888776431 11 1 2348999999988754321 1222235678999999999998
Q ss_pred hHHHHHHHhccc----ceEEE---------EcccCCCCcch-------HhhhHhhhCCceeeecHHHHHhCCCcccceeE
Q 010367 160 HMFRKVISLTKS----HCKLG---------LTATLVREDER-------ITDLNFLIGPKLYEANWLDLVKGGFIANVQCA 219 (512)
Q Consensus 160 ~~~~~~l~~~~~----~~~l~---------LTATp~~~~~~-------~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~ 219 (512)
..|+..+..+.. ..++. .+++|.-..+. ...+..++-+..+......+.+-.. ..++..
T Consensus 310 qsfQ~Wl~~v~~~~~~~k~~~~~~nii~~~~~~~pt~~~e~~t~~~~~~~~l~kL~~satLsqdP~Kl~~l~l-~~Prl~ 388 (620)
T KOG0350|consen 310 QSFQEWLDTVMSLCKTMKRVACLDNIIRQRQAPQPTVLSELLTKLGKLYPPLWKLVFSATLSQDPSKLKDLTL-HIPRLF 388 (620)
T ss_pred HHHHHHHHHHHHHhCCchhhcChhhhhhhcccCCchhhHHHHhhcCCcCchhHhhhcchhhhcChHHHhhhhc-CCCceE
Confidence 877765543321 11111 11122111000 1111122222222222222222111 111111
Q ss_pred EEEcC------CCHHHHHHHHHhhchHHHHHHhhcCc-chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---
Q 010367 220 EVWCP------MTKEFFSEYLKKENSKKKQALYVMNP-NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--- 289 (512)
Q Consensus 220 ~~~~~------~~~~~~~~~l~~~~~~~~~~~~~~~~-~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~--- 289 (512)
.+..+ +++. ...+ .....+ -|-..+-.++... ...++|+|+++++.+..++..|+
T Consensus 389 ~v~~~~~~ryslp~~-l~~~-----------~vv~~~~~kpl~~~~lI~~~---k~~r~lcf~~S~~sa~Rl~~~L~v~~ 453 (620)
T KOG0350|consen 389 HVSKPLIGRYSLPSS-LSHR-----------LVVTEPKFKPLAVYALITSN---KLNRTLCFVNSVSSANRLAHVLKVEF 453 (620)
T ss_pred EeecccceeeecChh-hhhc-----------eeecccccchHhHHHHHHHh---hcceEEEEecchHHHHHHHHHHHHHh
Confidence 11111 1111 1111 111111 2333445555443 37899999999999999998884
Q ss_pred ------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCc
Q 010367 290 ------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363 (512)
Q Consensus 290 ------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~ 363 (512)
+..+.|.+....|.+.+..|..| ++++||||+++++|+|+.++++||.|++|. +..+|+||+||++|+|+
T Consensus 454 ~~~~~~~s~~t~~l~~k~r~k~l~~f~~g-~i~vLIcSD~laRGiDv~~v~~VINYd~P~-~~ktyVHR~GRTARAgq-- 529 (620)
T KOG0350|consen 454 CSDNFKVSEFTGQLNGKRRYKMLEKFAKG-DINVLICSDALARGIDVNDVDNVINYDPPA-SDKTYVHRAGRTARAGQ-- 529 (620)
T ss_pred ccccchhhhhhhhhhHHHHHHHHHHHhcC-CceEEEehhhhhcCCcccccceEeecCCCc-hhhHHHHhhcccccccC--
Confidence 34588999999999999999998 999999999999999999999999999887 99999999999999996
Q ss_pred cccccCCCCceeEEEEEEEeCCc
Q 010367 364 EDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 364 ~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
.++.|++.+...
T Consensus 530 -----------~G~a~tll~~~~ 541 (620)
T KOG0350|consen 530 -----------DGYAITLLDKHE 541 (620)
T ss_pred -----------CceEEEeecccc
Confidence 367888887554
No 54
>KOG0340 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=9.2e-30 Score=240.84 Aligned_cols=316 Identities=18% Similarity=0.200 Sum_probs=228.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-cC-----CCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.++.|.|..++++++.+. +||-++-||+|||.....++.+ +. -=.||+.||++|+.|..++|......-..
T Consensus 28 ~~pTpiQ~~cIpkILeGr---dcig~AkTGsGKT~AFaLPil~rLsedP~giFalvlTPTrELA~QiaEQF~alGk~l~l 104 (442)
T KOG0340|consen 28 KKPTPIQQACIPKILEGR---DCIGCAKTGSGKTAAFALPILNRLSEDPYGIFALVLTPTRELALQIAEQFIALGKLLNL 104 (442)
T ss_pred CCCCchHhhhhHHHhccc---ccccccccCCCcchhhhHHHHHhhccCCCcceEEEecchHHHHHHHHHHHHHhcccccc
Confidence 578999999999999885 9999999999999997777754 32 24899999999999999999987666667
Q ss_pred cEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc---
Q 010367 98 QICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT--- 169 (512)
Q Consensus 98 ~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~--- 169 (512)
++.++.|+... .+...++++|+|++.+.....-..+. ..+. ..+..++|+|||+++.+..|...+..+
T Consensus 105 K~~vivGG~d~i~qa~~L~~rPHvVvatPGRlad~l~sn~~~---~~~~-~~rlkflVlDEADrvL~~~f~d~L~~i~e~ 180 (442)
T KOG0340|consen 105 KVSVIVGGTDMIMQAAILSDRPHVVVATPGRLADHLSSNLGV---CSWI-FQRLKFLVLDEADRVLAGCFPDILEGIEEC 180 (442)
T ss_pred eEEEEEccHHHhhhhhhcccCCCeEecCccccccccccCCcc---chhh-hhceeeEEecchhhhhccchhhHHhhhhcc
Confidence 88899887542 24678999999999998754322110 1111 246679999999999988777766543
Q ss_pred -cc-ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEE-EEcCCCHHHHHHHHHhhchHHHHHHh
Q 010367 170 -KS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE-VWCPMTKEFFSEYLKKENSKKKQALY 246 (512)
Q Consensus 170 -~~-~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~ 246 (512)
+. +..++||||....- ..+++-..-. ++ .+.+.. -..+.....+..|+ ..
T Consensus 181 lP~~RQtLlfSATitd~i------~ql~~~~i~k---------~~--a~~~e~~~~vstvetL~q~yI-~~--------- 233 (442)
T KOG0340|consen 181 LPKPRQTLLFSATITDTI------KQLFGCPITK---------SI--AFELEVIDGVSTVETLYQGYI-LV--------- 233 (442)
T ss_pred CCCccceEEEEeehhhHH------HHhhcCCccc---------cc--ceEEeccCCCCchhhhhhhee-ec---------
Confidence 33 37799999986322 2222211100 00 000000 00111223344444 11
Q ss_pred hcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEe
Q 010367 247 VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (512)
Q Consensus 247 ~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t 321 (512)
....|-..+-.++...++.....++||+++...++.++..|+ +..+|+.+++.+|...+.+|+.+ ..++||+|
T Consensus 234 -~~~vkdaYLv~~Lr~~~~~~~~simIFvnttr~cQ~l~~~l~~le~r~~~lHs~m~Q~eR~~aLsrFrs~-~~~iliaT 311 (442)
T KOG0340|consen 234 -SIDVKDAYLVHLLRDFENKENGSIMIFVNTTRECQLLSMTLKNLEVRVVSLHSQMPQKERLAALSRFRSN-AARILIAT 311 (442)
T ss_pred -chhhhHHHHHHHHhhhhhccCceEEEEeehhHHHHHHHHHHhhhceeeeehhhcchHHHHHHHHHHHhhc-CccEEEEe
Confidence 111222345556655552356789999999999999988873 45699999999999999999998 99999999
Q ss_pred CCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhh
Q 010367 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 322 ~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (512)
+++++|+|+|.++.||+++-|. .|..|+||+||..|+|+. +...++|++..++.
T Consensus 312 DVAsRGLDIP~V~LVvN~diPr-~P~~yiHRvGRtARAGR~-------------G~aiSivt~rDv~l 365 (442)
T KOG0340|consen 312 DVASRGLDIPTVELVVNHDIPR-DPKDYIHRVGRTARAGRK-------------GMAISIVTQRDVEL 365 (442)
T ss_pred chhhcCCCCCceeEEEecCCCC-CHHHHHHhhcchhcccCC-------------cceEEEechhhHHH
Confidence 9999999999999999998876 999999999999999963 33456777666665
No 55
>TIGR00348 hsdR type I site-specific deoxyribonuclease, HsdR family. Members of this family are assumed to differ from each other in DNA site specificity.
Probab=99.97 E-value=9.3e-30 Score=276.20 Aligned_cols=342 Identities=17% Similarity=0.158 Sum_probs=224.2
Q ss_pred CCCCcHHHHHHHHHHHhC---C----CCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGN---G----RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~----~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
+.-+|+||..|+.+++.. + ..++|+|+++||+|||++++.++..+ ..++|||||+..|..||.++|..
T Consensus 236 k~~~r~~Q~~av~~~~~~~~~~~~~~~~~~gli~~~TGsGKT~t~~~la~~l~~~~~~~~vl~lvdR~~L~~Q~~~~f~~ 315 (667)
T TIGR00348 236 KPYQRYMQYRAVKKIVESITRKTWGKDERGGLIWHTQGSGKTLTMLFAARKALELLKNPKVFFVVDRRELDYQLMKEFQS 315 (667)
T ss_pred eeehHHHHHHHHHHHHHHHHhcccCCCCceeEEEEecCCCccHHHHHHHHHHHhhcCCCeEEEEECcHHHHHHHHHHHHh
Confidence 355899999999987542 1 23689999999999999998888654 24799999999999999999999
Q ss_pred hhCCCCCcEEEEcCCccccc-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhc-CCccEEEEcCCCCCCchHHHHHH-H
Q 010367 91 WSTIQDDQICRFTSDSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVI-S 167 (512)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~lvIiDEaH~~~~~~~~~~l-~ 167 (512)
+.......+.. .+..+..+ .....|+|+|++++..... .....+.. ....+||+||||+.....+...+ .
T Consensus 316 ~~~~~~~~~~s-~~~L~~~l~~~~~~iivtTiQk~~~~~~------~~~~~~~~~~~~~lvIvDEaHrs~~~~~~~~l~~ 388 (667)
T TIGR00348 316 LQKDCAERIES-IAELKRLLEKDDGGIIITTIQKFDKKLK------EEEEKFPVDRKEVVVIFDEAHRSQYGELAKNLKK 388 (667)
T ss_pred hCCCCCcccCC-HHHHHHHHhCCCCCEEEEEhHHhhhhHh------hhhhccCCCCCCEEEEEEcCccccchHHHHHHHh
Confidence 85211111100 00011111 2346799999999975211 11111111 12238999999999998888777 4
Q ss_pred hcccceEEEEcccCCCCcchH-hh-hHhhhCCceeeecHHHHHhCCCcccceeEEEEcCC--CHHH----HHHHHHhh--
Q 010367 168 LTKSHCKLGLTATLVREDERI-TD-LNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TKEF----FSEYLKKE-- 237 (512)
Q Consensus 168 ~~~~~~~l~LTATp~~~~~~~-~~-l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~--~~~~----~~~~l~~~-- 237 (512)
.++..++|||||||.+.++.. .. ....+|+.++.++..++++.|++.++.+....... +.+. +.++....
T Consensus 389 ~~p~a~~lGfTaTP~~~~d~~t~~~f~~~fg~~i~~Y~~~~AI~dG~~~~i~Y~~~~~~~~~~~~~l~~~~~~~~~~~~~ 468 (667)
T TIGR00348 389 ALKNASFFGFTGTPIFKKDRDTSLTFAYVFGRYLHRYFITDAIRDGLTVKIDYEDRLPEDHLDRKKLDAFFDEIFELLPE 468 (667)
T ss_pred hCCCCcEEEEeCCCcccccccccccccCCCCCeEEEeeHHHHhhcCCeeeEEEEecchhhccChHHHHHHHHHHHHhhhc
Confidence 677789999999998754331 11 22336789999999999999999998876655432 2221 22221110
Q ss_pred --ch-----HHHH----HHhhcCcchH-HHHHHHHHHhh---hcCCCeEEEEecCHHHHHHHHHHhCC----------Cc
Q 010367 238 --NS-----KKKQ----ALYVMNPNKF-RACEFLIRFHE---QQRGDKIIVFADNLFALTEYAMKLRK----------PM 292 (512)
Q Consensus 238 --~~-----~~~~----~~~~~~~~k~-~~l~~ll~~~~---~~~g~k~iVf~~~~~~~~~l~~~L~~----------~~ 292 (512)
.. .++. .-...++... .++..+++... ...+.|++|||.++.+|..+.+.|.. .+
T Consensus 469 ~~~~~~~~~l~~~~~~~~~~~~~~~~~~~ia~~i~~h~~~~~~~~~~kamvv~~sr~~a~~~~~~l~~~~~~~~~~~~vv 548 (667)
T TIGR00348 469 RIREITKESLKEKLQKTKKILFNEDRLESIAKDIAEHYAKFKELFKFKAMVVAISRYACVEEKNALDEELNEKFEASAIV 548 (667)
T ss_pred cccHHHHHHHHHHHHHHHhhhcChHHHHHHHHHHHHHHHHhhhcccCceeEEEecHHHHHHHHHHHHhhcccccCCeeEE
Confidence 00 0000 0011223322 23444444331 12357999999999999998887621 13
Q ss_pred eeCCCCHH---------------------HHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHH
Q 010367 293 IYGATSHV---------------------ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (512)
Q Consensus 293 i~g~~~~~---------------------eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q 351 (512)
+++..... ...+++++|++.+.+++||.++++.+|+|.|.++++++..+ ..+ ..++|
T Consensus 549 ~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Fk~~~~~~ilIVvdmllTGFDaP~l~tLyldKp-lk~-h~LlQ 626 (667)
T TIGR00348 549 MTGKESDDAEIRDYNKHIRTKFDKSDGFEIYYKDLERFKKEENPKLLIVVDMLLTGFDAPILNTLYLDKP-LKY-HGLLQ 626 (667)
T ss_pred ecCCccchhHHHHHHHHhccccccchhhhHHHHHHHHhcCCCCceEEEEEcccccccCCCccceEEEecc-ccc-cHHHH
Confidence 44443221 23478999988658899999999999999999999998754 434 46899
Q ss_pred Hhhccccc-CCCccccccCCCCceeEEEEEEEe
Q 010367 352 RLGRILRA-KGKLEDRMAGGKEEYNAFFYSLVS 383 (512)
Q Consensus 352 ~~GR~~R~-g~~~~~~~~~~~~~~~~~~y~lv~ 383 (512)
++||+.|+ .++|+ .+.|++++.
T Consensus 627 ai~R~nR~~~~~K~----------~g~IvDy~g 649 (667)
T TIGR00348 627 AIARTNRIDGKDKT----------FGLIVDYRG 649 (667)
T ss_pred HHHHhccccCCCCC----------CEEEEECcC
Confidence 99999995 54333 356666654
No 56
>KOG0342 consensus ATP-dependent RNA helicase pitchoune [RNA processing and modification]
Probab=99.97 E-value=1e-30 Score=257.09 Aligned_cols=293 Identities=16% Similarity=0.158 Sum_probs=209.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
.++.+.|..++..++.+. +.+..+-||+|||++++.++.+. +-.++|||||++|+.|...+.+..+.
T Consensus 103 ~~MT~VQ~~ti~pll~gk---Dvl~~AKTGtGKTlAFLiPaie~l~k~~~~~r~~~~vlIi~PTRELA~Q~~~eak~Ll~ 179 (543)
T KOG0342|consen 103 ETMTPVQQKTIPPLLEGK---DVLAAAKTGTGKTLAFLLPAIELLRKLKFKPRNGTGVLIICPTRELAMQIFAEAKELLK 179 (543)
T ss_pred cchhHHHHhhcCccCCCc---cceeeeccCCCceeeehhHHHHHHHhcccCCCCCeeEEEecccHHHHHHHHHHHHHHHh
Confidence 368899999999988875 89999999999999988777543 12599999999999999999988765
Q ss_pred CC-CCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHH---
Q 010367 94 IQ-DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK--- 164 (512)
Q Consensus 94 ~~-~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~--- 164 (512)
.. ...+...-|+... ++...+.|+|+||+.|.....+.. .+..+...++|+|||+++....|++
T Consensus 180 ~h~~~~v~~viGG~~~~~e~~kl~k~~niliATPGRLlDHlqNt~-------~f~~r~~k~lvlDEADrlLd~GF~~di~ 252 (543)
T KOG0342|consen 180 YHESITVGIVIGGNNFSVEADKLVKGCNILIATPGRLLDHLQNTS-------GFLFRNLKCLVLDEADRLLDIGFEEDVE 252 (543)
T ss_pred hCCCcceEEEeCCccchHHHHHhhccccEEEeCCchHHhHhhcCC-------cchhhccceeEeecchhhhhcccHHHHH
Confidence 55 4466666666442 244689999999998865433211 1112445799999999999876654
Q ss_pred -HHHhcc-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCC-----CHHHHHHHHHhh
Q 010367 165 -VISLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-----TKEFFSEYLKKE 237 (512)
Q Consensus 165 -~l~~~~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~-----~~~~~~~~l~~~ 237 (512)
++..++ ..+.+++|||.......+..+ .+.+ .+..+.|.- +.+...+
T Consensus 253 ~Ii~~lpk~rqt~LFSAT~~~kV~~l~~~--------------------~L~~-d~~~v~~~d~~~~~The~l~Q----- 306 (543)
T KOG0342|consen 253 QIIKILPKQRQTLLFSATQPSKVKDLARG--------------------ALKR-DPVFVNVDDGGERETHERLEQ----- 306 (543)
T ss_pred HHHHhccccceeeEeeCCCcHHHHHHHHH--------------------hhcC-CceEeecCCCCCcchhhcccc-----
Confidence 444443 346799999987543332111 1111 111111111 1110000
Q ss_pred chHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCC
Q 010367 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCS 312 (512)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~ 312 (512)
..+......++..+-.+++.+. ...|+||||.+......+++.|+ +.-+||+.++..|..+..+|++.
T Consensus 307 -----gyvv~~~~~~f~ll~~~LKk~~--~~~KiiVF~sT~~~vk~~~~lL~~~dlpv~eiHgk~~Q~kRT~~~~~F~ka 379 (543)
T KOG0342|consen 307 -----GYVVAPSDSRFSLLYTFLKKNI--KRYKIIVFFSTCMSVKFHAELLNYIDLPVLEIHGKQKQNKRTSTFFEFCKA 379 (543)
T ss_pred -----eEEeccccchHHHHHHHHHHhc--CCceEEEEechhhHHHHHHHHHhhcCCchhhhhcCCcccccchHHHHHhhc
Confidence 0111112223455555665554 23899999999988888887774 34599999999999999999997
Q ss_pred CCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 313 ~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+.-||+||+++++|+|+|+++.||++++|. ++.+|+||+||++|.|.
T Consensus 380 -esgIL~cTDVaARGlD~P~V~~VvQ~~~P~-d~~~YIHRvGRTaR~gk 426 (543)
T KOG0342|consen 380 -ESGILVCTDVAARGLDIPDVDWVVQYDPPS-DPEQYIHRVGRTAREGK 426 (543)
T ss_pred -ccceEEecchhhccCCCCCceEEEEeCCCC-CHHHHHHHhccccccCC
Confidence 899999999999999999999999998886 99999999999999773
No 57
>KOG0338 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.97 E-value=2.1e-30 Score=255.13 Aligned_cols=308 Identities=17% Similarity=0.165 Sum_probs=218.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--C-------CCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--K-------KSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--~-------~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
..|.|.|..+|+-.+-+. ..+-++.||+|||-.++.++... . .+|||||||++|+-|....+++...+
T Consensus 202 ~~PTpIQ~a~IPvallgk---DIca~A~TGsGKTAAF~lPiLERLlYrPk~~~~TRVLVL~PTRELaiQv~sV~~qlaqF 278 (691)
T KOG0338|consen 202 KKPTPIQVATIPVALLGK---DICACAATGSGKTAAFALPILERLLYRPKKVAATRVLVLVPTRELAIQVHSVTKQLAQF 278 (691)
T ss_pred CCCCchhhhcccHHhhcc---hhhheecccCCchhhhHHHHHHHHhcCcccCcceeEEEEeccHHHHHHHHHHHHHHHhh
Confidence 478999999999666554 78889999999999988777542 1 27999999999999988777665555
Q ss_pred CCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHH---
Q 010367 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI--- 166 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l--- 166 (512)
....+++..|+..-+ +...++|+|+||+.|....+.+ ..|....+-++|+|||+++....|..-+
T Consensus 279 t~I~~~L~vGGL~lk~QE~~LRs~PDIVIATPGRlIDHlrNs-------~sf~ldsiEVLvlDEADRMLeegFademnEi 351 (691)
T KOG0338|consen 279 TDITVGLAVGGLDLKAQEAVLRSRPDIVIATPGRLIDHLRNS-------PSFNLDSIEVLVLDEADRMLEEGFADEMNEI 351 (691)
T ss_pred ccceeeeeecCccHHHHHHHHhhCCCEEEecchhHHHHhccC-------CCccccceeEEEechHHHHHHHHHHHHHHHH
Confidence 556788888875422 3467999999999887654322 2222356678999999999987665544
Q ss_pred -Hhcc-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEc-CCCHHHHHHHHHhhchHHHH
Q 010367 167 -SLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC-PMTKEFFSEYLKKENSKKKQ 243 (512)
Q Consensus 167 -~~~~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~ 243 (512)
...+ .++.+++|||.... +.+|..+ ..-.|+.+..-.. ...+...++|++-...+
T Consensus 352 i~lcpk~RQTmLFSATMtee---VkdL~sl----------------SL~kPvrifvd~~~~~a~~LtQEFiRIR~~r--- 409 (691)
T KOG0338|consen 352 IRLCPKNRQTMLFSATMTEE---VKDLASL----------------SLNKPVRIFVDPNKDTAPKLTQEFIRIRPKR--- 409 (691)
T ss_pred HHhccccccceeehhhhHHH---HHHHHHh----------------hcCCCeEEEeCCccccchhhhHHHheecccc---
Confidence 4333 45779999999632 2222211 1112222211111 11222334444111100
Q ss_pred HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 244 ~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
...+-.++..|+...- .+++|||+.+...+..+--.|+ +.-+||++++.+|.+.++.|++. +++||
T Consensus 410 -----e~dRea~l~~l~~rtf---~~~~ivFv~tKk~AHRl~IllGLlgl~agElHGsLtQ~QRlesL~kFk~~-eidvL 480 (691)
T KOG0338|consen 410 -----EGDREAMLASLITRTF---QDRTIVFVRTKKQAHRLRILLGLLGLKAGELHGSLTQEQRLESLEKFKKE-EIDVL 480 (691)
T ss_pred -----ccccHHHHHHHHHHhc---ccceEEEEehHHHHHHHHHHHHHhhchhhhhcccccHHHHHHHHHHHHhc-cCCEE
Confidence 0112345556664433 4689999999999887766663 34599999999999999999997 99999
Q ss_pred EEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
|+|+++++|||++++.+||+|..|. +...|+||+||+.|+|+ .| +-.+|+..+.
T Consensus 481 iaTDvAsRGLDI~gV~tVINy~mP~-t~e~Y~HRVGRTARAGR----------aG---rsVtlvgE~d 534 (691)
T KOG0338|consen 481 IATDVASRGLDIEGVQTVINYAMPK-TIEHYLHRVGRTARAGR----------AG---RSVTLVGESD 534 (691)
T ss_pred EEechhhccCCccceeEEEeccCch-hHHHHHHHhhhhhhccc----------Cc---ceEEEecccc
Confidence 9999999999999999999998776 99999999999999996 34 4446777663
No 58
>KOG0343 consensus RNA Helicase [RNA processing and modification]
Probab=99.97 E-value=1.7e-30 Score=257.80 Aligned_cols=293 Identities=16% Similarity=0.146 Sum_probs=217.3
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
..+...|..+|...+.+. ..+-++-||+|||++.+.++... +--+|||.||++|+.|....+.+...
T Consensus 90 v~~teiQ~~~Ip~aL~G~---DvlGAAkTGSGKTLAFlvPvlE~L~r~kWs~~DGlGalIISPTRELA~QtFevL~kvgk 166 (758)
T KOG0343|consen 90 VKMTEIQRDTIPMALQGH---DVLGAAKTGSGKTLAFLVPVLEALYRLKWSPTDGLGALIISPTRELALQTFEVLNKVGK 166 (758)
T ss_pred ccHHHHHHhhcchhccCc---ccccccccCCCceeeehHHHHHHHHHcCCCCCCCceeEEecchHHHHHHHHHHHHHHhh
Confidence 578899999999888775 88999999999999988776432 22699999999999999999998776
Q ss_pred CCCCcEEEEcCCccccc----cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHH--
Q 010367 94 IQDDQICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS-- 167 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~-- 167 (512)
...-..+.+-|+..-++ -...+|+||||+.|...... ...|......++|+|||+++....|...+.
T Consensus 167 ~h~fSaGLiiGG~~~k~E~eRi~~mNILVCTPGRLLQHmde-------~~~f~t~~lQmLvLDEADR~LDMGFk~tL~~I 239 (758)
T KOG0343|consen 167 HHDFSAGLIIGGKDVKFELERISQMNILVCTPGRLLQHMDE-------NPNFSTSNLQMLVLDEADRMLDMGFKKTLNAI 239 (758)
T ss_pred ccccccceeecCchhHHHHHhhhcCCeEEechHHHHHHhhh-------cCCCCCCcceEEEeccHHHHHHHhHHHHHHHH
Confidence 66667777777755332 25688999999988654211 112333567899999999999887766554
Q ss_pred --hccc-ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEc---CCCHHHHHHHHHhhchHH
Q 010367 168 --LTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWC---PMTKEFFSEYLKKENSKK 241 (512)
Q Consensus 168 --~~~~-~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~---~~~~~~~~~~l~~~~~~~ 241 (512)
.++. ++.|++|||+.+.... |..+ -+..+.+..+.. .-+++..+.+.
T Consensus 240 i~~lP~~RQTLLFSATqt~svkd---LaRL-----------------sL~dP~~vsvhe~a~~atP~~L~Q~y------- 292 (758)
T KOG0343|consen 240 IENLPKKRQTLLFSATQTKSVKD---LARL-----------------SLKDPVYVSVHENAVAATPSNLQQSY------- 292 (758)
T ss_pred HHhCChhheeeeeecccchhHHH---HHHh-----------------hcCCCcEEEEeccccccChhhhhheE-------
Confidence 4443 4789999999864433 2221 111222222221 11222222111
Q ss_pred HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCC--ceeCCCCHHHHHHHHHHhhCCCC
Q 010367 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKP--MIYGATSHVERTKILQAFKCSRD 314 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~--~i~g~~~~~eR~~il~~F~~~~~ 314 (512)
+.+.-..|+.++...+..|- ..|.|||..+..++.-++..+ +++ .+||.+++..|.++..+|... .
T Consensus 293 ---~~v~l~~Ki~~L~sFI~shl---k~K~iVF~SscKqvkf~~e~F~rlrpg~~l~~L~G~~~Q~~R~ev~~~F~~~-~ 365 (758)
T KOG0343|consen 293 ---VIVPLEDKIDMLWSFIKSHL---KKKSIVFLSSCKQVKFLYEAFCRLRPGIPLLALHGTMSQKKRIEVYKKFVRK-R 365 (758)
T ss_pred ---EEEehhhHHHHHHHHHHhcc---ccceEEEEehhhHHHHHHHHHHhcCCCCceeeeccchhHHHHHHHHHHHHHh-c
Confidence 12223456677777776654 789999999999988888776 333 589999999999999999996 7
Q ss_pred ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 315 ~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
-.|||||+++++|+|+|.+++||+++-|. +..+|+||+||+.|.+.
T Consensus 366 ~~vLF~TDv~aRGLDFpaVdwViQ~DCPe-dv~tYIHRvGRtAR~~~ 411 (758)
T KOG0343|consen 366 AVVLFCTDVAARGLDFPAVDWVIQVDCPE-DVDTYIHRVGRTARYKE 411 (758)
T ss_pred ceEEEeehhhhccCCCcccceEEEecCch-hHHHHHHHhhhhhcccC
Confidence 88999999999999999999999998886 99999999999999983
No 59
>COG0514 RecQ Superfamily II DNA helicase [DNA replication, recombination, and repair]
Probab=99.97 E-value=7.2e-29 Score=256.79 Aligned_cols=288 Identities=19% Similarity=0.176 Sum_probs=210.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
-..||-|.++|+.++.+. ++++.+|||.||++++..++.-..+.+|||.|..+|+....+.+... |+ .+..++
T Consensus 16 ~~FR~gQ~evI~~~l~g~---d~lvvmPTGgGKSlCyQiPAll~~G~TLVVSPLiSLM~DQV~~l~~~-Gi---~A~~ln 88 (590)
T COG0514 16 ASFRPGQQEIIDALLSGK---DTLVVMPTGGGKSLCYQIPALLLEGLTLVVSPLISLMKDQVDQLEAA-GI---RAAYLN 88 (590)
T ss_pred cccCCCHHHHHHHHHcCC---cEEEEccCCCCcchHhhhHHHhcCCCEEEECchHHHHHHHHHHHHHc-Cc---eeehhh
Confidence 367899999999999885 99999999999999999999888999999999999999999999886 33 344444
Q ss_pred CCcc-c--------cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc------hHHHH---H
Q 010367 104 SDSK-E--------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFRK---V 165 (512)
Q Consensus 104 ~~~~-~--------~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~------~~~~~---~ 165 (512)
+... + ...+..+++..+|+.+.. ..+++.+......+++|||||++.. +.|.+ +
T Consensus 89 S~l~~~e~~~v~~~l~~g~~klLyisPErl~~--------~~f~~~L~~~~i~l~vIDEAHCiSqWGhdFRP~Y~~lg~l 160 (590)
T COG0514 89 STLSREERQQVLNQLKSGQLKLLYISPERLMS--------PRFLELLKRLPISLVAIDEAHCISQWGHDFRPDYRRLGRL 160 (590)
T ss_pred cccCHHHHHHHHHHHhcCceeEEEECchhhcC--------hHHHHHHHhCCCceEEechHHHHhhcCCccCHhHHHHHHH
Confidence 4321 1 123668899999999975 3667777778999999999999983 24433 4
Q ss_pred HHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 166 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 166 l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
...++...+++||||-...-. .++...++ +....+.......+.-.|.--- ..
T Consensus 161 ~~~~~~~p~~AlTATA~~~v~--~DI~~~L~----------------l~~~~~~~~sfdRpNi~~~v~~-~~-------- 213 (590)
T COG0514 161 RAGLPNPPVLALTATATPRVR--DDIREQLG----------------LQDANIFRGSFDRPNLALKVVE-KG-------- 213 (590)
T ss_pred HhhCCCCCEEEEeCCCChHHH--HHHHHHhc----------------CCCcceEEecCCCchhhhhhhh-cc--------
Confidence 445555689999888753211 12221111 1111111111111111111100 00
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
..+.+.. ++.+... ..+...||||.++..++.+++.| +...+||+++.++|..+.++|..+ ++.|+||
T Consensus 214 ----~~~~q~~-fi~~~~~-~~~~~GIIYc~sRk~~E~ia~~L~~~g~~a~~YHaGl~~~eR~~~q~~f~~~-~~~iiVA 286 (590)
T COG0514 214 ----EPSDQLA-FLATVLP-QLSKSGIIYCLTRKKVEELAEWLRKNGISAGAYHAGLSNEERERVQQAFLND-EIKVMVA 286 (590)
T ss_pred ----cHHHHHH-HHHhhcc-ccCCCeEEEEeeHHhHHHHHHHHHHCCCceEEecCCCCHHHHHHHHHHHhcC-CCcEEEE
Confidence 0111111 3333111 34556899999999999999999 345799999999999999999997 9999999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|.+.|+|||.|++..||+++.|. |...|.|-+||+||.|.
T Consensus 287 T~AFGMGIdKpdVRfViH~~lP~-s~EsYyQE~GRAGRDG~ 326 (590)
T COG0514 287 TNAFGMGIDKPDVRFVIHYDLPG-SIESYYQETGRAGRDGL 326 (590)
T ss_pred eccccCccCCCCceEEEEecCCC-CHHHHHHHHhhccCCCC
Confidence 99999999999999999998876 99999999999999885
No 60
>COG4096 HsdR Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.97 E-value=5.9e-30 Score=266.96 Aligned_cols=346 Identities=18% Similarity=0.201 Sum_probs=242.0
Q ss_pred ccccccccCCC-CCCCccCCCCCCCCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEE
Q 010367 2 LEEYDFRNDNV-NPDLNMELKPHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCL 72 (512)
Q Consensus 2 l~~yd~~~~~~-~~~~~~~l~~~~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~L 72 (512)
|+.|....... .+...++.-....+|+||..|++++ +..++ +.++|+|.||+|||.+|++++..+ .+++|
T Consensus 141 le~l~~~r~~~~~~~~~~~~~s~i~~RyyQ~~AI~rv~Eaf~~g~-~raLlvMATGTGKTrTAiaii~rL~r~~~~KRVL 219 (875)
T COG4096 141 LEGLLYRRQLRIQQLAYIDIDSAIGPRYYQIIAIRRVIEAFSKGQ-NRALLVMATGTGKTRTAIAIIDRLIKSGWVKRVL 219 (875)
T ss_pred HHHHhccccccccccccCcccccccchHHHHHHHHHHHHHHhcCC-ceEEEEEecCCCcceeHHHHHHHHHhcchhheee
Confidence 34555555555 4445555566789999999999986 44454 459999999999999999999766 36999
Q ss_pred EEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEc
Q 010367 73 CLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMD 152 (512)
Q Consensus 73 vl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiD 152 (512)
+|+.+.+|++|-+..|..+. |.....-+..+.. ....+.|.++||+++........ .....+....|+|||+|
T Consensus 220 FLaDR~~Lv~QA~~af~~~~--P~~~~~n~i~~~~--~~~s~~i~lsTyqt~~~~~~~~~---~~~~~f~~g~FDlIvID 292 (875)
T COG4096 220 FLADRNALVDQAYGAFEDFL--PFGTKMNKIEDKK--GDTSSEIYLSTYQTMTGRIEQKE---DEYRRFGPGFFDLIVID 292 (875)
T ss_pred EEechHHHHHHHHHHHHHhC--CCccceeeeeccc--CCcceeEEEeehHHHHhhhhccc---cccccCCCCceeEEEec
Confidence 99999999999999999984 3333333322222 12357899999999987544321 12233444579999999
Q ss_pred CCCCCCchHHHHHHHhcccceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHH
Q 010367 153 EVHVVPAHMFRKVISLTKSHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS 231 (512)
Q Consensus 153 EaH~~~~~~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~ 231 (512)
|||+-....++.++..+.+. .++|||||....+. .-..+| |..+|.+++.+.++.|+++++....+....+.+-+.
T Consensus 293 EaHRgi~~~~~~I~dYFdA~-~~gLTATP~~~~d~--~T~~~F~g~Pt~~YsleeAV~DGfLvpy~vi~i~~~~~~~G~~ 369 (875)
T COG4096 293 EAHRGIYSEWSSILDYFDAA-TQGLTATPKETIDR--STYGFFNGEPTYAYSLEEAVEDGFLVPYKVIRIDTDFDLDGWK 369 (875)
T ss_pred hhhhhHHhhhHHHHHHHHHH-HHhhccCccccccc--ccccccCCCcceeecHHHHhhccccCCCCceEEeeeccccCcC
Confidence 99999999999999988765 46679999753332 234455 999999999999999999998877766554322111
Q ss_pred --HHHHhhchHHHH--------------HHhhcCcchHHHHHHHHHHhhh-cC---CCeEEEEecCHHHHHHHHHHhCC-
Q 010367 232 --EYLKKENSKKKQ--------------ALYVMNPNKFRACEFLIRFHEQ-QR---GDKIIVFADNLFALTEYAMKLRK- 290 (512)
Q Consensus 232 --~~l~~~~~~~~~--------------~~~~~~~~k~~~l~~ll~~~~~-~~---g~k~iVf~~~~~~~~~l~~~L~~- 290 (512)
..-.+....... .-.+....+-.++..+.++... .. -.|+||||.+..|++.+...|..
T Consensus 370 ~~~~serek~~g~~i~~dd~~~~~~d~dr~~v~~~~~~~V~r~~~~~l~~~~~g~~~~KTIvFa~n~dHAe~i~~~~~~~ 449 (875)
T COG4096 370 PDAGSEREKLQGEAIDEDDQNFEARDFDRTLVIPFRTETVARELTEYLKRGATGDEIGKTIVFAKNHDHAERIREALVNE 449 (875)
T ss_pred cCccchhhhhhccccCcccccccccccchhccccchHHHHHHHHHHHhccccCCCccCceEEEeeCcHHHHHHHHHHHHh
Confidence 000000000000 0001111223344555555541 02 36999999999999999999942
Q ss_pred ---------CceeCCCCHHHHHHHHHHhhCC-CCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 291 ---------PMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 291 ---------~~i~g~~~~~eR~~il~~F~~~-~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
..|+|+.. +-+..++.|..+ +-.+|.++++++.+|+|+|.+-+++++.. ..|...|.|++||+-|..
T Consensus 450 ype~~~~~a~~IT~d~~--~~q~~Id~f~~ke~~P~IaitvdlL~TGiDvpev~nlVF~r~-VrSktkF~QMvGRGTRl~ 526 (875)
T COG4096 450 YPEYNGRYAMKITGDAE--QAQALIDNFIDKEKYPRIAITVDLLTTGVDVPEVVNLVFDRK-VRSKTKFKQMVGRGTRLC 526 (875)
T ss_pred CccccCceEEEEeccch--hhHHHHHHHHhcCCCCceEEehhhhhcCCCchheeeeeehhh-hhhHHHHHHHhcCccccC
Confidence 23667654 445678888775 34567777899999999999999998854 459999999999999987
Q ss_pred C
Q 010367 361 G 361 (512)
Q Consensus 361 ~ 361 (512)
+
T Consensus 527 ~ 527 (875)
T COG4096 527 P 527 (875)
T ss_pred c
Confidence 5
No 61
>COG1201 Lhr Lhr-like helicases [General function prediction only]
Probab=99.97 E-value=3.8e-29 Score=267.79 Aligned_cols=299 Identities=17% Similarity=0.222 Sum_probs=215.1
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cC-------CCEEEEEcChhhHHHHHHHHHHh
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK-------KSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~-------~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
-.+|+|.|++|++.+.++. +.++.+|||+|||++|+.++.. .. -.||+|.|.++|.......+..|
T Consensus 20 ~~~~t~~Q~~a~~~i~~G~---nvLiiAPTGsGKTeAAfLpil~~l~~~~~~~~~~~i~~lYIsPLkALn~Di~~rL~~~ 96 (814)
T COG1201 20 FTSLTPPQRYAIPEIHSGE---NVLIIAPTGSGKTEAAFLPVINELLSLGKGKLEDGIYALYISPLKALNNDIRRRLEEP 96 (814)
T ss_pred cCCCCHHHHHHHHHHhCCC---ceEEEcCCCCChHHHHHHHHHHHHHhccCCCCCCceEEEEeCcHHHHHHHHHHHHHHH
Confidence 3589999999999999665 9999999999999999877732 21 25999999999999999999998
Q ss_pred hCCCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------
Q 010367 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------ 160 (512)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------ 160 (512)
...-...|.+-+|+..+. ....++|+||||++|.-... ..++.+.| .+..+||+||.|.+...
T Consensus 97 ~~~~G~~v~vRhGDT~~~er~r~~~~PPdILiTTPEsL~lll~----~~~~r~~l--~~vr~VIVDEiHel~~sKRG~~L 170 (814)
T COG1201 97 LRELGIEVAVRHGDTPQSEKQKMLKNPPHILITTPESLAILLN----SPKFRELL--RDVRYVIVDEIHALAESKRGVQL 170 (814)
T ss_pred HHHcCCccceecCCCChHHhhhccCCCCcEEEeChhHHHHHhc----CHHHHHHh--cCCcEEEeehhhhhhccccchhh
Confidence 765566778888875432 34679999999999876543 22445555 56788999999999854
Q ss_pred --HHHHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCc-eeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhh
Q 010367 161 --MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (512)
Q Consensus 161 --~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~-~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 237 (512)
...++.......+++|||||-...+. ...++.|.. ..+ ++.-....+.++..+......+..
T Consensus 171 sl~LeRL~~l~~~~qRIGLSATV~~~~~---varfL~g~~~~~~-----Iv~~~~~k~~~i~v~~p~~~~~~~------- 235 (814)
T COG1201 171 ALSLERLRELAGDFQRIGLSATVGPPEE---VAKFLVGFGDPCE-----IVDVSAAKKLEIKVISPVEDLIYD------- 235 (814)
T ss_pred hhhHHHHHhhCcccEEEeehhccCCHHH---HHHHhcCCCCceE-----EEEcccCCcceEEEEecCCccccc-------
Confidence 33344443345689999999973332 233444432 111 111122222232222211110000
Q ss_pred chHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC------CCceeCCCCHHHHHHHHHHhhC
Q 010367 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKC 311 (512)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~il~~F~~ 311 (512)
......-...+.++++.| ..+|||+|++..++.++..|+ +...||+++.+.|.++.++|++
T Consensus 236 --------~~~~~~~~~~i~~~v~~~-----~ttLIF~NTR~~aE~l~~~L~~~~~~~i~~HHgSlSre~R~~vE~~lk~ 302 (814)
T COG1201 236 --------EELWAALYERIAELVKKH-----RTTLIFTNTRSGAERLAFRLKKLGPDIIEVHHGSLSRELRLEVEERLKE 302 (814)
T ss_pred --------cchhHHHHHHHHHHHhhc-----CcEEEEEeChHHHHHHHHHHHHhcCCceeeecccccHHHHHHHHHHHhc
Confidence 000011123444555433 389999999999999999883 4568999999999999999999
Q ss_pred CCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhccc-ccC
Q 010367 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL-RAK 360 (512)
Q Consensus 312 ~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~-R~g 360 (512)
| +++++|||+.++.|||+-+++.||++.+|. +....+||+||+| |.+
T Consensus 303 G-~lravV~TSSLELGIDiG~vdlVIq~~SP~-sV~r~lQRiGRsgHr~~ 350 (814)
T COG1201 303 G-ELKAVVATSSLELGIDIGDIDLVIQLGSPK-SVNRFLQRIGRAGHRLG 350 (814)
T ss_pred C-CceEEEEccchhhccccCCceEEEEeCCcH-HHHHHhHhccccccccC
Confidence 8 899999999999999999999999998886 9999999999986 444
No 62
>KOG0348 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.8e-29 Score=249.89 Aligned_cols=318 Identities=17% Similarity=0.169 Sum_probs=200.2
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
.+...|.++|+.++++. ++++-++||+|||+.++.++-.. +--.||||||++|+.|.++.+.+..
T Consensus 159 ~pTsVQkq~IP~lL~gr---D~lV~aQTGSGKTLAYllPiVq~Lq~m~~ki~Rs~G~~ALVivPTREL~~Q~y~~~qKLl 235 (708)
T KOG0348|consen 159 APTSVQKQAIPVLLEGR---DALVRAQTGSGKTLAYLLPIVQSLQAMEPKIQRSDGPYALVIVPTRELALQIYETVQKLL 235 (708)
T ss_pred ccchHhhcchhhhhcCc---ceEEEcCCCCcccHHHHHHHHHHHHhcCccccccCCceEEEEechHHHHHHHHHHHHHHh
Confidence 46778999999999854 99999999999999998887432 1248999999999999999999864
Q ss_pred CCC-CCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----
Q 010367 93 TIQ-DDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---- 162 (512)
Q Consensus 93 ~~~-~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~---- 162 (512)
.-- =..-+++-|+.+.+ +..+.+|+|+||+.|....+ ....+.-.....+|+||++++..-.|
T Consensus 236 ~~~hWIVPg~lmGGEkkKSEKARLRKGiNILIgTPGRLvDHLk-------nT~~i~~s~LRwlVlDEaDrlleLGfekdi 308 (708)
T KOG0348|consen 236 KPFHWIVPGVLMGGEKKKSEKARLRKGINILIGTPGRLVDHLK-------NTKSIKFSRLRWLVLDEADRLLELGFEKDI 308 (708)
T ss_pred cCceEEeeceeecccccccHHHHHhcCceEEEcCchHHHHHHh-------ccchheeeeeeEEEecchhHHHhccchhhH
Confidence 311 01123344444332 45789999999998875432 12333335567899999999986543
Q ss_pred HHHHHhccc--------------ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCC-CH
Q 010367 163 RKVISLTKS--------------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM-TK 227 (512)
Q Consensus 163 ~~~l~~~~~--------------~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~-~~ 227 (512)
..++..+.. ...++||||.........++ .+-.|.... .... ..+......-....++. ..
T Consensus 309 t~Il~~v~~~~~~e~~~~~lp~q~q~mLlSATLtd~V~rLa~~-sLkDpv~I~--ld~s-~~~~~p~~~a~~ev~~~~~~ 384 (708)
T KOG0348|consen 309 TQILKAVHSIQNAECKDPKLPHQLQNMLLSATLTDGVNRLADL-SLKDPVYIS--LDKS-HSQLNPKDKAVQEVDDGPAG 384 (708)
T ss_pred HHHHHHHhhccchhcccccccHHHHhHhhhhhhHHHHHHHhhc-cccCceeee--ccch-hhhcCcchhhhhhcCCcccc
Confidence 344444411 24588999997543333222 122333222 1000 01111000000000000 00
Q ss_pred HHHHHHHHhhchHHHHHHhhcCcchH--HHHHHHH-HHhhhcCCCeEEEEecCHHHHHHHHHHh----------------
Q 010367 228 EFFSEYLKKENSKKKQALYVMNPNKF--RACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKL---------------- 288 (512)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~k~--~~l~~ll-~~~~~~~g~k~iVf~~~~~~~~~l~~~L---------------- 288 (512)
+-+..+. ..... .+. +..-|.|+ -.+..++ +..+.....|+|||....+..+-=+..|
T Consensus 385 ~~l~~~~-iPeqL-~qr-y~vVPpKLRLV~Laa~L~~~~k~~~~qk~iVF~S~~d~VeFHy~lf~~~l~~~~e~~s~~~~ 461 (708)
T KOG0348|consen 385 DKLDSFA-IPEQL-LQR-YTVVPPKLRLVALAALLLNKVKFEEKQKMIVFFSCSDSVEFHYSLFSEALLSHLEGSSGAPD 461 (708)
T ss_pred ccccccc-CcHHh-hhc-eEecCCchhHHHHHHHHHHHhhhhhhceeEEEEechhHHHHHHHHHHhhhhcccccccCCcc
Confidence 0000000 00000 111 12223332 2333333 2222233568999988877665544444
Q ss_pred -----------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhccc
Q 010367 289 -----------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357 (512)
Q Consensus 289 -----------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~ 357 (512)
+...+||+|++++|..+++.|... .-.||+||+++++|+|+|.+.+||+|++|+ ++.+|+||+||+.
T Consensus 462 s~g~~~l~~~~k~~rLHGsm~QeeRts~f~~Fs~~-~~~VLLcTDVAaRGLDlP~V~~vVQYd~P~-s~adylHRvGRTA 539 (708)
T KOG0348|consen 462 SEGLPPLFMDLKFYRLHGSMEQEERTSVFQEFSHS-RRAVLLCTDVAARGLDLPHVGLVVQYDPPF-STADYLHRVGRTA 539 (708)
T ss_pred cCCChhhhhcceEEEecCchhHHHHHHHHHhhccc-cceEEEehhhhhccCCCCCcCeEEEeCCCC-CHHHHHHHhhhhh
Confidence 112389999999999999999996 677999999999999999999999999987 9999999999999
Q ss_pred ccCC
Q 010367 358 RAKG 361 (512)
Q Consensus 358 R~g~ 361 (512)
|+|.
T Consensus 540 RaG~ 543 (708)
T KOG0348|consen 540 RAGE 543 (708)
T ss_pred hccC
Confidence 9994
No 63
>COG1197 Mfd Transcription-repair coupling factor (superfamily II helicase) [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=5.3e-28 Score=262.42 Aligned_cols=328 Identities=20% Similarity=0.209 Sum_probs=241.8
Q ss_pred CCCCCCCcHHHHHHHHHHHh---CCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 20 LKPHAQPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
-.+.++-.|-|..|++.+.. .+++-+-+||+..|.|||-+|+-++-. -++.|.|+|||..|++|..+.|+..+.
T Consensus 589 ~~FPyeET~DQl~AI~eVk~DM~~~kpMDRLiCGDVGFGKTEVAmRAAFkAV~~GKQVAvLVPTTlLA~QHy~tFkeRF~ 668 (1139)
T COG1197 589 ASFPYEETPDQLKAIEEVKRDMESGKPMDRLICGDVGFGKTEVAMRAAFKAVMDGKQVAVLVPTTLLAQQHYETFKERFA 668 (1139)
T ss_pred hcCCCcCCHHHHHHHHHHHHHhccCCcchheeecCcCCcHHHHHHHHHHHHhcCCCeEEEEcccHHhHHHHHHHHHHHhc
Confidence 45668899999999998854 445557799999999999999877744 368999999999999999999998765
Q ss_pred CCCCcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHH
Q 010367 94 IQDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~ 164 (512)
--|.+|.+++.-...+ -.+..+|+|.|...|.+..+ + .+.||+||||-|+++-..-.+
T Consensus 669 ~fPV~I~~LSRF~s~kE~~~il~~la~G~vDIvIGTHrLL~kdv~----------F---kdLGLlIIDEEqRFGVk~KEk 735 (1139)
T COG1197 669 GFPVRIEVLSRFRSAKEQKEILKGLAEGKVDIVIGTHRLLSKDVK----------F---KDLGLLIIDEEQRFGVKHKEK 735 (1139)
T ss_pred CCCeeEEEecccCCHHHHHHHHHHHhcCCccEEEechHhhCCCcE----------E---ecCCeEEEechhhcCccHHHH
Confidence 5566777665532211 24889999999998876532 2 678999999999998664443
Q ss_pred HHHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcc--c---ceeEEEEcCCCHHHHHHHHHhhch
Q 010367 165 VISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA--N---VQCAEVWCPMTKEFFSEYLKKENS 239 (512)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~--~---~~~~~~~~~~~~~~~~~~l~~~~~ 239 (512)
+-..-..-.+|-|||||++.--.+ .+.| +.+-..|. | ..+.....+.++...++
T Consensus 736 LK~Lr~~VDvLTLSATPIPRTL~M----sm~G----------iRdlSvI~TPP~~R~pV~T~V~~~d~~~ire------- 794 (1139)
T COG1197 736 LKELRANVDVLTLSATPIPRTLNM----SLSG----------IRDLSVIATPPEDRLPVKTFVSEYDDLLIRE------- 794 (1139)
T ss_pred HHHHhccCcEEEeeCCCCcchHHH----HHhc----------chhhhhccCCCCCCcceEEEEecCChHHHHH-------
Confidence 333323447899999998654331 1111 11111121 1 11222223333332222
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-------CCCceeCCCCHHHHHHHHHHhhCC
Q 010367 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCS 312 (512)
Q Consensus 240 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~il~~F~~~ 312 (512)
.|+..+ .+|.++....|.++.++.++..| ++.+.||.|+..+-++++..|.++
T Consensus 795 ------------------AI~REl--~RgGQvfYv~NrV~~Ie~~~~~L~~LVPEarI~vaHGQM~e~eLE~vM~~F~~g 854 (1139)
T COG1197 795 ------------------AILREL--LRGGQVFYVHNRVESIEKKAERLRELVPEARIAVAHGQMRERELEEVMLDFYNG 854 (1139)
T ss_pred ------------------HHHHHH--hcCCEEEEEecchhhHHHHHHHHHHhCCceEEEEeecCCCHHHHHHHHHHHHcC
Confidence 223333 57889999999999999999988 456899999999999999999998
Q ss_pred CCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHH
Q 010367 313 RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 313 ~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
+++|||||.+.++|||+|+||++|+-+++.-...|..|..||+||... .+|.|-++..+..--..+
T Consensus 855 -~~dVLv~TTIIEtGIDIPnANTiIIe~AD~fGLsQLyQLRGRVGRS~~-------------~AYAYfl~p~~k~lT~~A 920 (1139)
T COG1197 855 -EYDVLVCTTIIETGIDIPNANTIIIERADKFGLAQLYQLRGRVGRSNK-------------QAYAYFLYPPQKALTEDA 920 (1139)
T ss_pred -CCCEEEEeeeeecCcCCCCCceEEEeccccccHHHHHHhccccCCccc-------------eEEEEEeecCccccCHHH
Confidence 999999999999999999999999987666699999999999999764 588888888766666778
Q ss_pred HHHHHHHH---hcCCceEEeeCCCCC
Q 010367 393 TKRQQFLI---DQGYSFKVITSLPPP 415 (512)
Q Consensus 393 ~~r~~~l~---~~g~~~~~i~~~~~~ 415 (512)
.+|-..+. +.|-.|++..+.-.+
T Consensus 921 ~kRL~aI~~~~~LGaGf~lA~~DLeI 946 (1139)
T COG1197 921 EKRLEAIASFTELGAGFKLAMHDLEI 946 (1139)
T ss_pred HHHHHHHHhhhhcCchHHHHhcchhc
Confidence 88877664 567667766553333
No 64
>COG1204 Superfamily II helicase [General function prediction only]
Probab=99.96 E-value=5.4e-29 Score=269.94 Aligned_cols=300 Identities=18% Similarity=0.173 Sum_probs=201.6
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
+++|.|++++...+-.+ .+.++++|||+|||++|..++... +.++++|||+++|+.+..++|.+|.. -..+|.
T Consensus 31 el~~~qq~av~~~~~~~--~N~li~aPTgsGKTlIA~lai~~~l~~~~~k~vYivPlkALa~Ek~~~~~~~~~-~GirV~ 107 (766)
T COG1204 31 ELFNPQQEAVEKGLLSD--ENVLISAPTGSGKTLIALLAILSTLLEGGGKVVYIVPLKALAEEKYEEFSRLEE-LGIRVG 107 (766)
T ss_pred HhhHHHHHHhhccccCC--CcEEEEcCCCCchHHHHHHHHHHHHHhcCCcEEEEeChHHHHHHHHHHhhhHHh-cCCEEE
Confidence 89999999999876654 499999999999999998888542 36999999999999999999994432 234799
Q ss_pred EEcCCccccc--cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcc----
Q 010367 101 RFTSDSKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK---- 170 (512)
Q Consensus 101 ~~~~~~~~~~--~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~---- 170 (512)
..+|+..... ...++|+|+||+.+-...++... ++ .+.++||+||+|.+..+ ....++..+.
T Consensus 108 ~~TgD~~~~~~~l~~~~ViVtT~EK~Dsl~R~~~~------~~--~~V~lvViDEiH~l~d~~RG~~lE~iv~r~~~~~~ 179 (766)
T COG1204 108 ISTGDYDLDDERLARYDVIVTTPEKLDSLTRKRPS------WI--EEVDLVVIDEIHLLGDRTRGPVLESIVARMRRLNE 179 (766)
T ss_pred EecCCcccchhhhccCCEEEEchHHhhHhhhcCcc------hh--hcccEEEEeeeeecCCcccCceehhHHHHHHhhCc
Confidence 9999876432 46799999999999776544321 22 57899999999999865 3333333332
Q ss_pred cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCc
Q 010367 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (512)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 250 (512)
..++++||||..+..+ +..+++.......|.-.. +..++.+........ ...+ .. ..
T Consensus 180 ~~rivgLSATlpN~~e----vA~wL~a~~~~~~~rp~~---l~~~v~~~~~~~~~~------------~~~k---~~-~~ 236 (766)
T COG1204 180 LIRIVGLSATLPNAEE----VADWLNAKLVESDWRPVP---LRRGVPYVGAFLGAD------------GKKK---TW-PL 236 (766)
T ss_pred ceEEEEEeeecCCHHH----HHHHhCCcccccCCCCcc---cccCCccceEEEEec------------Cccc---cc-cc
Confidence 2478999999975433 233333322211110000 000000000000000 0000 00 00
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh------------------------------------------
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------------------------------ 288 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L------------------------------------------ 288 (512)
.+-..+..++...- ..+..+||||+++..+...++.|
T Consensus 237 ~~~~~~~~~v~~~~-~~~~qvLvFv~sR~~a~~~A~~l~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~l~e~v~~ 315 (766)
T COG1204 237 LIDNLALELVLESL-AEGGQVLVFVHSRKEAEKTAKKLRIKMSATLSDDEKIVLDEGASPILIPETPTSEDEELAELVLR 315 (766)
T ss_pred cchHHHHHHHHHHH-hcCCeEEEEEecCchHHHHHHHHHHHHhhcCChhhhhhccccccccccccccccchHHHHHHHHh
Confidence 11123333332232 57889999999998766665554
Q ss_pred CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE-----ecC----CCCCHHHHHHHhhccccc
Q 010367 289 RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ-----ISS----HAGSRRQEAQRLGRILRA 359 (512)
Q Consensus 289 ~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~-----~~~----~~~s~~~~~Q~~GR~~R~ 359 (512)
+++++|++++.+.|.-+.+.|+.+ .++||+||..++.|+|+| |++||+ +++ -.-+..++.|+.||+||+
T Consensus 316 GvafHhAGL~~~~R~~vE~~Fr~g-~ikVlv~TpTLA~GVNLP-A~~VIIk~~~~y~~~~g~~~i~~~dv~QM~GRAGRP 393 (766)
T COG1204 316 GVAFHHAGLPREDRQLVEDAFRKG-KIKVLVSTPTLAAGVNLP-ARTVIIKDTRRYDPKGGIVDIPVLDVLQMAGRAGRP 393 (766)
T ss_pred CccccccCCCHHHHHHHHHHHhcC-CceEEEechHHhhhcCCc-ceEEEEeeeEEEcCCCCeEECchhhHhhccCcCCCC
Confidence 245689999999999999999998 999999999999999999 555554 231 011567889999999999
Q ss_pred CC
Q 010367 360 KG 361 (512)
Q Consensus 360 g~ 361 (512)
|-
T Consensus 394 g~ 395 (766)
T COG1204 394 GY 395 (766)
T ss_pred Cc
Confidence 94
No 65
>TIGR01587 cas3_core CRISPR-associated helicase Cas3. This model represents the highly conserved core region of an alignment of Cas3, a protein found in association with CRISPR repeat elements in a broad range of bacteria and archaea. Cas3 appears to be a helicase, with regions found by pfam00270 (DEAD/DEAH box helicase) and pfam00271 (Helicase conserved C-terminal domain). Some but not all members have an N-terminal HD domain region (pfam01966) that is not included within this model.
Probab=99.96 E-value=7.9e-28 Score=245.32 Aligned_cols=293 Identities=19% Similarity=0.206 Sum_probs=183.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcc-------------
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK------------- 107 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~------------- 107 (512)
.++.+|||+|||.+++.++... ..++++++|+++|+.|+.+.+..+++. .+..+++...
T Consensus 2 vvi~apTGsGKT~~~~~~~l~~~~~~~~~~ii~v~P~~~L~~q~~~~l~~~f~~---~~~~~~~~~~~~~~~~~~~~~~~ 78 (358)
T TIGR01587 2 LVIEAPTGYGKTEAALLWALHSIKSQKADRVIIALPTRATINAMYRRAKELFGS---NLGLLHSSSSFKRIKEMGDSEEF 78 (358)
T ss_pred EEEEeCCCCCHHHHHHHHHHHHHhhCCCCeEEEEeehHHHHHHHHHHHHHHhCc---ccEEeeccHHHHHHhccCCchhH
Confidence 5899999999999998887632 468999999999999999999998653 3343333211
Q ss_pred cc----------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH---HHHHHhcc--cc
Q 010367 108 ER----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF---RKVISLTK--SH 172 (512)
Q Consensus 108 ~~----------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~---~~~l~~~~--~~ 172 (512)
.. .....+|+|+|++.+.....+... ..... +......++|+||+|.+....+ ..++..+. ..
T Consensus 79 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~~~~~-~~~~~-~~~~~~~~iViDE~h~~~~~~~~~l~~~l~~l~~~~~ 156 (358)
T TIGR01587 79 EHLFPLYIHSNDKLFLDPITVCTIDQVLKSVFGEFG-HYEFT-LASIANSLLIFDEVHFYDEYTLALILAVLEVLKDNDV 156 (358)
T ss_pred HHHHHHHhhchhhhhhCCeeeCCHHHHHHHHhcccc-hHHHH-HHHhcCCEEEEeCCCCCCHHHHHHHHHHHHHHHHcCC
Confidence 00 012367999999987654322000 00011 1112347999999999986533 22333332 34
Q ss_pred eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcch
Q 010367 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 252 (512)
+.+++|||+.. ....+..-++..... ... +.. ... ... ...+. ........+
T Consensus 157 ~~i~~SATlp~---~l~~~~~~~~~~~~~---------~~~-~~~--~~~-~~~---~~~~~---------~~~~~~~~~ 208 (358)
T TIGR01587 157 PILLMSATLPK---FLKEYAEKIGYVEFN---------EPL-DLK--EER-RFE---RHRFI---------KIESDKVGE 208 (358)
T ss_pred CEEEEecCchH---HHHHHHhcCCCcccc---------cCC-CCc--ccc-ccc---cccce---------eeccccccC
Confidence 68999999862 111111001000000 000 000 000 000 00000 000001133
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-------CCceeCCCCHHHHHH----HHHHhhCCCCccEEEEe
Q 010367 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTK----ILQAFKCSRDLNTIFLS 321 (512)
Q Consensus 253 ~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~----il~~F~~~~~~~vlv~t 321 (512)
...+..+++... .+.++||||+++..++.++..|. +..+||++++.+|.+ +++.|+++ ...+||+|
T Consensus 209 ~~~l~~l~~~~~--~~~~~lVf~~t~~~~~~~~~~L~~~~~~~~~~~~h~~~~~~~r~~~~~~~~~~f~~~-~~~ilvaT 285 (358)
T TIGR01587 209 ISSLERLLEFIK--KGGKIAIIVNTVDRAQEFYQQLKENAPEEEIMLLHSRFTEKDRAKKEAELLEEMKKN-EKFVIVAT 285 (358)
T ss_pred HHHHHHHHHHhh--CCCeEEEEECCHHHHHHHHHHHHhhcCCCeEEEEECCCCHHHHHHHHHHHHHHhcCC-CCeEEEEC
Confidence 455556665443 46799999999999999999982 346899999999976 48999997 89999999
Q ss_pred CCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCC
Q 010367 322 KVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTD 385 (512)
Q Consensus 322 ~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~ 385 (512)
+++++|+|+| ++++|.+.. ++..|+||+||++|.|.+.. +..++++|.....+
T Consensus 286 ~~~~~GiDi~-~~~vi~~~~---~~~~~iqr~GR~gR~g~~~~-------~~~~~~v~~~~~~~ 338 (358)
T TIGR01587 286 QVIEASLDIS-ADVMITELA---PIDSLIQRLGRLHRYGRKNG-------ENFEVYIITIAPEG 338 (358)
T ss_pred cchhceeccC-CCEEEEcCC---CHHHHHHHhccccCCCCCCC-------CCCeEEEEeecCCC
Confidence 9999999997 788887633 67899999999999996533 33456666655443
No 66
>KOG0335 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=1.9e-28 Score=245.06 Aligned_cols=297 Identities=19% Similarity=0.216 Sum_probs=209.9
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------------CCCEEEEEcChhhHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------------KKSCLCLATNAVSVDQWAF 86 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------------~~~~Lvl~P~~~L~~Qw~~ 86 (512)
...+.|+|+-+++.+..+. ..+.+++||+|||...+.++... ...+||++||++|+.|...
T Consensus 94 ~~~ptpvQk~sip~i~~Gr---dl~acAqTGsGKT~aFLiPii~~~~~~~~~~~~~~~~~~~P~~lIlapTReL~~Qi~n 170 (482)
T KOG0335|consen 94 YTKPTPVQKYSIPIISGGR---DLMACAQTGSGKTAAFLIPIISYLLDEGPEDRGESGGGVYPRALILAPTRELVDQIYN 170 (482)
T ss_pred ccCCCcceeeccceeecCC---ceEEEccCCCcchHHHHHHHHHHHHhcCcccCcccCCCCCCceEEEeCcHHHhhHHHH
Confidence 4689999999999776654 88999999999999988777422 1369999999999999999
Q ss_pred HHHHhhCCCCCcEEEEcCCcc-----ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc--
Q 010367 87 QFKLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-- 159 (512)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-- 159 (512)
+-+++......++....++.+ ......++|+|+|++.|....++. .+...+..++|+|||+++..
T Consensus 171 ea~k~~~~s~~~~~~~ygg~~~~~q~~~~~~gcdIlvaTpGrL~d~~e~g--------~i~l~~~k~~vLDEADrMlD~m 242 (482)
T KOG0335|consen 171 EARKFSYLSGMKSVVVYGGTDLGAQLRFIKRGCDILVATPGRLKDLIERG--------KISLDNCKFLVLDEADRMLDEM 242 (482)
T ss_pred HHHhhcccccceeeeeeCCcchhhhhhhhccCccEEEecCchhhhhhhcc--------eeehhhCcEEEecchHHhhhhc
Confidence 999998766666665555522 223578999999999998765432 11124556999999999987
Q ss_pred ---hHHHHHHHhcc-----cceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHH
Q 010367 160 ---HMFRKVISLTK-----SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (512)
Q Consensus 160 ---~~~~~~l~~~~-----~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 230 (512)
+..++++.... ..+.+++|||...+-... ...++.. ...+......- -.....-..+|+
T Consensus 243 gF~p~Ir~iv~~~~~~~~~~~qt~mFSAtfp~~iq~l-~~~fl~~~yi~laV~rvg~----~~~ni~q~i~~V------- 310 (482)
T KOG0335|consen 243 GFEPQIRKIVEQLGMPPKNNRQTLLFSATFPKEIQRL-AADFLKDNYIFLAVGRVGS----TSENITQKILFV------- 310 (482)
T ss_pred cccccHHHHhcccCCCCccceeEEEEeccCChhhhhh-HHHHhhccceEEEEeeecc----ccccceeEeeee-------
Confidence 34556665442 347799999987543321 1111111 01111000000 000111112222
Q ss_pred HHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhh------cCCCeEEEEecCHHHHHHHHHHhCC-----CceeCCCCH
Q 010367 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ------QRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSH 299 (512)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~------~~g~k~iVf~~~~~~~~~l~~~L~~-----~~i~g~~~~ 299 (512)
....|...+..++..... ...++++|||.+++.+..++..|.. .-+||..++
T Consensus 311 -----------------~~~~kr~~Lldll~~~~~~~~~~~~~~e~tlvFvEt~~~~d~l~~~l~~~~~~~~sIhg~~tq 373 (482)
T KOG0335|consen 311 -----------------NEMEKRSKLLDLLNKDDGPPSDGEPKWEKTLVFVETKRGADELAAFLSSNGYPAKSIHGDRTQ 373 (482)
T ss_pred -----------------cchhhHHHHHHHhhcccCCcccCCcccceEEEEeeccchhhHHHHHHhcCCCCceeecchhhh
Confidence 222233333444422110 1124899999999999999999943 359999999
Q ss_pred HHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
.+|.+.++.|+.+ .+.++|+|.++++|+|+|++.+||.|+-|. .-..|+||+||+||.|.
T Consensus 374 ~er~~al~~Fr~g-~~pvlVaT~VaaRGlDi~~V~hVInyDmP~-d~d~YvHRIGRTGR~Gn 433 (482)
T KOG0335|consen 374 IEREQALNDFRNG-KAPVLVATNVAARGLDIPNVKHVINYDMPA-DIDDYVHRIGRTGRVGN 433 (482)
T ss_pred hHHHHHHHHhhcC-CcceEEEehhhhcCCCCCCCceeEEeecCc-chhhHHHhccccccCCC
Confidence 9999999999998 999999999999999999999999998886 79999999999999994
No 67
>TIGR02621 cas3_GSU0051 CRISPR-associated helicase Cas3, Anaes-subtype. This model describes a CRISPR-associated putative DEAH-box helicase, or Cas3, of a subtype found in Actinomyces naeslundii MG1, Geobacter sulfurreducens PCA, Gemmata obscuriglobus UQM 2246, and Desulfotalea psychrophila. This protein includes both DEAH and HD motifs.
Probab=99.96 E-value=2.2e-27 Score=255.55 Aligned_cols=301 Identities=16% Similarity=0.159 Sum_probs=188.7
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC-
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ- 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~- 95 (512)
.++++|||.++++.++.+. ...++.+|||+|||.++..+.... ..++++++|+++|+.|..+++.++....
T Consensus 13 G~~PtpiQ~~~i~~il~G~--~~v~~~apTGSGKTaa~aafll~~~~~~~~~~rLv~~vPtReLa~Qi~~~~~~~~k~l~ 90 (844)
T TIGR02621 13 GYSPFPWQLSLAERFVAGQ--PPESCSTPTGLGKTSIIAAWLLAVEIGAKVPRRLVYVVNRRTVVDQVTEEAEKIGERLP 90 (844)
T ss_pred CCCCCHHHHHHHHHHHcCC--CcceEecCCCCcccHHHHHhhccccccccccceEEEeCchHHHHHHHHHHHHHHHHHhc
Confidence 4569999999999988654 256777999999998654333222 1244457799999999999999886421
Q ss_pred ----------------------CCcEEEEcCCccc-----cccCCCeEEEEchhhhhccC-CCchhHHHHHHHHh---cC
Q 010367 96 ----------------------DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGG-KRSEESEKIIEEIR---NR 144 (512)
Q Consensus 96 ----------------------~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~-~r~~~~~~~~~~l~---~~ 144 (512)
+..+..+.|+... .....++|+|+|.+++.+.. .|.+.......-+. -.
T Consensus 91 ~~~~~~~~~~~~~~~~~~~~~~~l~v~~l~GG~~~~~q~~~l~~~p~IIVgT~D~i~sr~L~~gYg~~~~~~pi~ag~L~ 170 (844)
T TIGR02621 91 DVPEVEAALWALCSTRPEKKDRPLAISTLRGQFADNDEWMLDPHRPAVIVGTVDMIGSRLLFSGYGCGFKSRPLHAGFLG 170 (844)
T ss_pred ccchhhhhhhhhhccccccccCCeEEEEEECCCChHHHHHhcCCCCcEEEECHHHHcCCccccccccccccccchhhhhc
Confidence 2456666776432 13466889999998886532 11111111110000 14
Q ss_pred CccEEEEcCCCCCCc--hHHHHHHHhc--cc----ceEEEEcccCCCCcchHhhhHhhh--CCceeeecHHHHHhCCCcc
Q 010367 145 EWGLLLMDEVHVVPA--HMFRKVISLT--KS----HCKLGLTATLVREDERITDLNFLI--GPKLYEANWLDLVKGGFIA 214 (512)
Q Consensus 145 ~~~lvIiDEaH~~~~--~~~~~~l~~~--~~----~~~l~LTATp~~~~~~~~~l~~l~--gp~~~~~~~~~l~~~~~l~ 214 (512)
+..++|+||||.... .....++..+ .. .+.++||||+...... +...+ .|........ .+.
T Consensus 171 ~v~~LVLDEADLd~gF~~~l~~Il~~l~rp~~~rprQtLLFSAT~p~ei~~---l~~~~~~~p~~i~V~~~------~l~ 241 (844)
T TIGR02621 171 QDALIVHDEAHLEPAFQELLKQIMNEQQRPPDFLPLRVVELTATSRTDGPD---RTTLLSAEDYKHPVLKK------RLA 241 (844)
T ss_pred cceEEEEehhhhccccHHHHHHHHHhcccCcccccceEEEEecCCCccHHH---HHHHHccCCceeecccc------ccc
Confidence 578999999993322 2334445432 11 3689999999643221 21111 2222221111 111
Q ss_pred cceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---CC
Q 010367 215 NVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---KP 291 (512)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---~~ 291 (512)
....... ++...+.... ..+..+..... ..+.++||||+++..++.+++.|. ..
T Consensus 242 a~ki~q~-v~v~~e~Kl~---------------------~lv~~L~~ll~-e~g~~vLVF~NTv~~Aq~L~~~L~~~g~~ 298 (844)
T TIGR02621 242 AKKIVKL-VPPSDEKFLS---------------------TMVKELNLLMK-DSGGAILVFCRTVKHVRKVFAKLPKEKFE 298 (844)
T ss_pred ccceEEE-EecChHHHHH---------------------HHHHHHHHHHh-hCCCcEEEEECCHHHHHHHHHHHHhcCCe
Confidence 1111111 1111110000 11111222222 346799999999999999999993 46
Q ss_pred ceeCCCCHHHHH-----HHHHHhhC----CC------CccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcc
Q 010367 292 MIYGATSHVERT-----KILQAFKC----SR------DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRI 356 (512)
Q Consensus 292 ~i~g~~~~~eR~-----~il~~F~~----~~------~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~ 356 (512)
.+||++++.+|. +++++|+. +. ..+|||+|+++++|||++. ++||.... ....|+||+||+
T Consensus 299 lLHG~m~q~dR~~~~~~~il~~Fk~~~~~g~~~~~~~g~~ILVATdVaerGLDId~-d~VI~d~a---P~esyIQRiGRt 374 (844)
T TIGR02621 299 LLTGTLRGAERDDLVKKEIFNRFLPQMLSGSRARPQQGTVYLVCTSAGEVGVNISA-DHLVCDLA---PFESMQQRFGRV 374 (844)
T ss_pred EeeCCCCHHHHhhHHHHHHHHHHhccccccccccccccceEEeccchhhhcccCCc-ceEEECCC---CHHHHHHHhccc
Confidence 799999999999 78999987 31 2689999999999999986 88887543 568999999999
Q ss_pred cccCC
Q 010367 357 LRAKG 361 (512)
Q Consensus 357 ~R~g~ 361 (512)
+|.|.
T Consensus 375 gR~G~ 379 (844)
T TIGR02621 375 NRFGE 379 (844)
T ss_pred CCCCC
Confidence 99995
No 68
>KOG0336 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.96 E-value=9.7e-29 Score=237.37 Aligned_cols=294 Identities=17% Similarity=0.249 Sum_probs=216.5
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
++.|.|.+|.+-++++. +++.++.||+|||+..+....-. .-.+||+.|+++|+.|..-+..++.
T Consensus 242 KPtPIqSQaWPI~LQG~---DliGVAQTgtgKtL~~L~pg~ihi~aqp~~~~qr~~p~~lvl~ptreLalqie~e~~kys 318 (629)
T KOG0336|consen 242 KPTPIQSQAWPILLQGI---DLIGVAQTGTGKTLAFLLPGFIHIDAQPKRREQRNGPGVLVLTPTRELALQIEGEVKKYS 318 (629)
T ss_pred CCCcchhcccceeecCc---ceEEEEecCCCcCHHHhccceeeeeccchhhhccCCCceEEEeccHHHHHHHHhHHhHhh
Confidence 68889999988777775 89999999999999987655211 2369999999999999999999875
Q ss_pred CCCCCcEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHH
Q 010367 93 TIQDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRK 164 (512)
Q Consensus 93 ~~~~~~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~ 164 (512)
-..-..++++.++.... +.....|+++||..|... .+-..+.....-++|+|||+++... +.++
T Consensus 319 yng~ksvc~ygggnR~eqie~lkrgveiiiatPgrlndL--------~~~n~i~l~siTYlVlDEADrMLDMgFEpqIrk 390 (629)
T KOG0336|consen 319 YNGLKSVCVYGGGNRNEQIEDLKRGVEIIIATPGRLNDL--------QMDNVINLASITYLVLDEADRMLDMGFEPQIRK 390 (629)
T ss_pred hcCcceEEEecCCCchhHHHHHhcCceEEeeCCchHhhh--------hhcCeeeeeeeEEEEecchhhhhcccccHHHHH
Confidence 33334678888876532 457889999999988754 1222333356779999999999864 5566
Q ss_pred HHHhccc-ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHH
Q 010367 165 VISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ 243 (512)
Q Consensus 165 ~l~~~~~-~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 243 (512)
++-.+.. +..++-|||-+........ ..+-.|...-....++.. +. +-++.
T Consensus 391 illdiRPDRqtvmTSATWP~~VrrLa~-sY~Kep~~v~vGsLdL~a--------~~-------------------sVkQ~ 442 (629)
T KOG0336|consen 391 ILLDIRPDRQTVMTSATWPEGVRRLAQ-SYLKEPMIVYVGSLDLVA--------VK-------------------SVKQN 442 (629)
T ss_pred HhhhcCCcceeeeecccCchHHHHHHH-HhhhCceEEEecccceee--------ee-------------------eeeee
Confidence 6665554 4667788997643332211 112223322111111111 11 11111
Q ss_pred HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 244 ~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
.+......|+..+..++..+ +..+|+||||..+..++.+..-|. ...+||+..+.+|+..++.|+.| ++++|
T Consensus 443 i~v~~d~~k~~~~~~f~~~m--s~ndKvIiFv~~K~~AD~LSSd~~l~gi~~q~lHG~r~Q~DrE~al~~~ksG-~vrIL 519 (629)
T KOG0336|consen 443 IIVTTDSEKLEIVQFFVANM--SSNDKVIIFVSRKVMADHLSSDFCLKGISSQSLHGNREQSDREMALEDFKSG-EVRIL 519 (629)
T ss_pred EEecccHHHHHHHHHHHHhc--CCCceEEEEEechhhhhhccchhhhcccchhhccCChhhhhHHHHHHhhhcC-ceEEE
Confidence 12222344666777777766 578899999999999988887773 35699999999999999999998 99999
Q ss_pred EEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|+|+++++|+|+|++++|+.|+.|. |...|+||+||+||.|+
T Consensus 520 vaTDlaSRGlDv~DiTHV~NyDFP~-nIeeYVHRvGrtGRaGr 561 (629)
T KOG0336|consen 520 VATDLASRGLDVPDITHVYNYDFPR-NIEEYVHRVGRTGRAGR 561 (629)
T ss_pred EEechhhcCCCchhcceeeccCCCc-cHHHHHHHhcccccCCC
Confidence 9999999999999999999999987 99999999999999996
No 69
>COG1200 RecG RecG-like helicase [DNA replication, recombination, and repair / Transcription]
Probab=99.96 E-value=3.7e-27 Score=243.36 Aligned_cols=321 Identities=16% Similarity=0.210 Sum_probs=228.0
Q ss_pred CCCCcHHHHHHHHHHHhC---CCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 23 HAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
.|+|...|++++..+... ..+-+-++.++.|||||++++.++.. .+..+..++||..|+.|.+..|.+|+.--.
T Consensus 260 PF~LT~aQ~~vi~EI~~Dl~~~~~M~RLlQGDVGSGKTvVA~laml~ai~~G~Q~ALMAPTEILA~QH~~~~~~~l~~~~ 339 (677)
T COG1200 260 PFKLTNAQKRVIKEILADLASPVPMNRLLQGDVGSGKTVVALLAMLAAIEAGYQAALMAPTEILAEQHYESLRKWLEPLG 339 (677)
T ss_pred CCCccHHHHHHHHHHHhhhcCchhhHHHhccCcCCCHHHHHHHHHHHHHHcCCeeEEeccHHHHHHHHHHHHHHHhhhcC
Confidence 489999999999998643 33345699999999999998777754 467999999999999999999999986545
Q ss_pred CcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHH
Q 010367 97 DQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (512)
Q Consensus 97 ~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~ 167 (512)
..|..++|..+.+ ..+..+|+|.|...+... ..-.+.++||+||-|++.-.+...+..
T Consensus 340 i~V~lLtG~~kgk~r~~~l~~l~~G~~~ivVGTHALiQd~-------------V~F~~LgLVIiDEQHRFGV~QR~~L~~ 406 (677)
T COG1200 340 IRVALLTGSLKGKARKEILEQLASGEIDIVVGTHALIQDK-------------VEFHNLGLVIIDEQHRFGVHQRLALRE 406 (677)
T ss_pred CeEEEeecccchhHHHHHHHHHhCCCCCEEEEcchhhhcc-------------eeecceeEEEEeccccccHHHHHHHHH
Confidence 6788888875532 257899999999877532 223678999999999999887776666
Q ss_pred hcc-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcc--cceeEEEEcCCCHHHHHHHHHhhchHHHHH
Q 010367 168 LTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA--NVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (512)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~--~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (512)
.=. .+..|.|||||++..-.. ..+|..- .+ .++ -+. +..+...|++..
T Consensus 407 KG~~~Ph~LvMTATPIPRTLAl----t~fgDld--vS---~Id--ElP~GRkpI~T~~i~~~------------------ 457 (677)
T COG1200 407 KGEQNPHVLVMTATPIPRTLAL----TAFGDLD--VS---IID--ELPPGRKPITTVVIPHE------------------ 457 (677)
T ss_pred hCCCCCcEEEEeCCCchHHHHH----HHhcccc--ch---hhc--cCCCCCCceEEEEeccc------------------
Confidence 555 478999999998643221 1112110 00 110 011 112233333321
Q ss_pred HhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHH--------HHHHHHh-------CCCceeCCCCHHHHHHHHHHh
Q 010367 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFAL--------TEYAMKL-------RKPMIYGATSHVERTKILQAF 309 (512)
Q Consensus 245 ~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~--------~~l~~~L-------~~~~i~g~~~~~eR~~il~~F 309 (512)
.+-.++..+.+.. ..|+++.|.|+-++.- ..+++.| ++..+||.|+..+.++++++|
T Consensus 458 ------~~~~v~e~i~~ei--~~GrQaY~VcPLIeESE~l~l~~a~~~~~~L~~~~~~~~vgL~HGrm~~~eKd~vM~~F 529 (677)
T COG1200 458 ------RRPEVYERIREEI--AKGRQAYVVCPLIEESEKLELQAAEELYEELKSFLPELKVGLVHGRMKPAEKDAVMEAF 529 (677)
T ss_pred ------cHHHHHHHHHHHH--HcCCEEEEEeccccccccchhhhHHHHHHHHHHHcccceeEEEecCCChHHHHHHHHHH
Confidence 1112333444333 4699999999877643 3344444 355799999999999999999
Q ss_pred hCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhh
Q 010367 310 KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 310 ~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (512)
+++ +++|||+|.+.+.|+|+|+|++.|+.++..-...+.-|-.||+||-+. +.++..+|.. ...
T Consensus 530 k~~-e~~ILVaTTVIEVGVdVPnATvMVIe~AERFGLaQLHQLRGRVGRG~~----------qSyC~Ll~~~---~~~-- 593 (677)
T COG1200 530 KEG-EIDILVATTVIEVGVDVPNATVMVIENAERFGLAQLHQLRGRVGRGDL----------QSYCVLLYKP---PLS-- 593 (677)
T ss_pred HcC-CCcEEEEeeEEEecccCCCCeEEEEechhhhhHHHHHHhccccCCCCc----------ceEEEEEeCC---CCC--
Confidence 998 999999999999999999999999887765588999999999999764 4444443322 111
Q ss_pred HHHHHHHHHHHhcCCceEEe
Q 010367 390 FYSTKRQQFLIDQGYSFKVI 409 (512)
Q Consensus 390 ~~~~~r~~~l~~~g~~~~~i 409 (512)
..+++|-+.+.+-.-.|.+.
T Consensus 594 ~~a~~RL~im~~t~DGF~IA 613 (677)
T COG1200 594 EVAKQRLKIMRETTDGFVIA 613 (677)
T ss_pred hhHHHHHHHHHhcCCcceeh
Confidence 44567777776655555543
No 70
>COG1202 Superfamily II helicase, archaea-specific [General function prediction only]
Probab=99.96 E-value=2.8e-28 Score=243.27 Aligned_cols=351 Identities=20% Similarity=0.201 Sum_probs=230.9
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH----HhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i----~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
...|.|.|.-|++.-+-.+ .+.+++.+|++|||+++-.+- ..-++++|+++|..+|+.|-+++|+...+--...
T Consensus 214 ~~eLlPVQ~laVe~GLLeG--~nllVVSaTasGKTLIgElAGi~~~l~~g~KmlfLvPLVALANQKy~dF~~rYs~Lglk 291 (830)
T COG1202 214 IEELLPVQVLAVEAGLLEG--ENLLVVSATASGKTLIGELAGIPRLLSGGKKMLFLVPLVALANQKYEDFKERYSKLGLK 291 (830)
T ss_pred cceecchhhhhhhhccccC--CceEEEeccCCCcchHHHhhCcHHHHhCCCeEEEEehhHHhhcchHHHHHHHhhcccce
Confidence 3579999999999876655 389999999999999975442 3336899999999999999999998643222222
Q ss_pred EEEEcCCc---------cccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--------H
Q 010367 99 ICRFTSDS---------KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------M 161 (512)
Q Consensus 99 v~~~~~~~---------~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--------~ 161 (512)
+..-.|.. ......+++|+|.||+-+-...+-. .. ..+.+.|||||+|.+... .
T Consensus 292 vairVG~srIk~~~~pv~~~t~~dADIIVGTYEGiD~lLRtg-------~~--lgdiGtVVIDEiHtL~deERG~RLdGL 362 (830)
T COG1202 292 VAIRVGMSRIKTREEPVVVDTSPDADIIVGTYEGIDYLLRTG-------KD--LGDIGTVVIDEIHTLEDEERGPRLDGL 362 (830)
T ss_pred EEEEechhhhcccCCccccCCCCCCcEEEeechhHHHHHHcC-------Cc--ccccceEEeeeeeeccchhcccchhhH
Confidence 32222211 1113467999999998664432110 11 157899999999999863 3
Q ss_pred HHHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHH
Q 010367 162 FRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (512)
Q Consensus 162 ~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (512)
..++-..++..+.|+||||..++.+ +...+|.++..++- --.|...+.+.+.-
T Consensus 363 I~RLr~l~~~AQ~i~LSATVgNp~e----lA~~l~a~lV~y~~-------RPVplErHlvf~~~---------------- 415 (830)
T COG1202 363 IGRLRYLFPGAQFIYLSATVGNPEE----LAKKLGAKLVLYDE-------RPVPLERHLVFARN---------------- 415 (830)
T ss_pred HHHHHHhCCCCeEEEEEeecCChHH----HHHHhCCeeEeecC-------CCCChhHeeeeecC----------------
Confidence 3444455566789999999965433 33344443322211 01111122222211
Q ss_pred HHHHhhcCcchHHHHHHHHHHh------hhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhh
Q 010367 242 KQALYVMNPNKFRACEFLIRFH------EQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFK 310 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~------~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~ 310 (512)
...|+.++..|.+.. ...+ .++|||++++..+..++.+|. ...+|++++..+|..+...|.
T Consensus 416 -------e~eK~~ii~~L~k~E~~~~sskg~r-GQtIVFT~SRrr~h~lA~~L~~kG~~a~pYHaGL~y~eRk~vE~~F~ 487 (830)
T COG1202 416 -------ESEKWDIIARLVKREFSTESSKGYR-GQTIVFTYSRRRCHELADALTGKGLKAAPYHAGLPYKERKSVERAFA 487 (830)
T ss_pred -------chHHHHHHHHHHHHHHhhhhccCcC-CceEEEecchhhHHHHHHHhhcCCcccccccCCCcHHHHHHHHHHHh
Confidence 223445555555321 1122 379999999999999999994 567999999999999999999
Q ss_pred CCCCccEEEEeCCCcccccCccccEEEE----ecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 311 ~~~~~~vlv~t~~~~~GlDlp~~~~vI~----~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
++ ++.++|+|.+++.|+|+| |+.||+ +...|-|++.+.|+.||+||++ -.....+|-++.++.
T Consensus 488 ~q-~l~~VVTTAAL~AGVDFP-ASQVIFEsLaMG~~WLs~~EF~QM~GRAGRp~-----------yHdrGkVyllvepg~ 554 (830)
T COG1202 488 AQ-ELAAVVTTAALAAGVDFP-ASQVIFESLAMGIEWLSVREFQQMLGRAGRPD-----------YHDRGKVYLLVEPGK 554 (830)
T ss_pred cC-CcceEeehhhhhcCCCCc-hHHHHHHHHHcccccCCHHHHHHHhcccCCCC-----------cccCceEEEEecCCh
Confidence 97 999999999999999999 565554 3344569999999999999998 344577888886653
Q ss_pred HhhHHHHHHHHHHHhcCCceEEeeCCCCCCCCCCCcCCCHHHHHHHHHHHHhcC
Q 010367 387 QEMFYSTKRQQFLIDQGYSFKVITSLPPPDSGADLSYHRLDEQLALLGKVLSAG 440 (512)
Q Consensus 387 ~e~~~~~~r~~~l~~~g~~~~~i~~~~~~~~~~~~~~~~~~e~~~lL~~~~~~~ 440 (512)
. |... +-=.+...+++.++. ++ .+-.+.|...++..+.|......+
T Consensus 555 ~---Y~~~--m~~TEdevA~kLL~s--~~-e~V~vey~ee~e~e~vLA~~~v~~ 600 (830)
T COG1202 555 K---YHAS--MEETEDEVAFKLLES--EP-EPVIVEYDEEDEEENVLASAGVTN 600 (830)
T ss_pred h---hccc--ccccHHHHHHHHhcC--CC-CcceeccCcHHHHHHHHHHhhhcC
Confidence 1 1100 000111123344444 22 233566787777777777554433
No 71
>TIGR03158 cas3_cyano CRISPR-associated helicase, Cyano-type. subtype of CRISPR/Cas locus, found in several species of Cyanobacteria and several archaeal species. It contains helicase motifs and appears to represent the Cas3 protein of the Cyano subtype of CRISPR/Cas system.
Probab=99.96 E-value=5.5e-27 Score=237.43 Aligned_cols=292 Identities=16% Similarity=0.175 Sum_probs=183.3
Q ss_pred HHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCC----CCCcEEEEcC
Q 010367 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTI----QDDQICRFTS 104 (512)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~----~~~~v~~~~~ 104 (512)
||.++++.+.+++. ...++++|||+|||.+++.++.....++++++|+++|+.||.+.+..++.. ....+..++|
T Consensus 1 hQ~~~~~~~~~~~~-~~~~i~apTGsGKT~~~~~~~l~~~~~~~~~~P~~aL~~~~~~~~~~~~~~~~~~~~~~v~~~~g 79 (357)
T TIGR03158 1 HQVATFEALQSKDA-DIIFNTAPTGAGKTLAWLTPLLHGENDTIALYPTNALIEDQTEAIKEFVDVFKPERDVNLLHVSK 79 (357)
T ss_pred CHHHHHHHHHcCCC-CEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeChHHHHHHHHHHHHHHHHhcCCCCCceEEEecC
Confidence 79999999987751 247889999999999999888877778999999999999999999887621 2334555665
Q ss_pred Ccccc-------------------------ccCCCeEEEEchhhhhccCCCchhHHH--HHHHHhcCCccEEEEcCCCCC
Q 010367 105 DSKER-------------------------FRGNAGVVVTTYNMVAFGGKRSEESEK--IIEEIRNREWGLLLMDEVHVV 157 (512)
Q Consensus 105 ~~~~~-------------------------~~~~~~Ivv~T~~~l~~~~~r~~~~~~--~~~~l~~~~~~lvIiDEaH~~ 157 (512)
..... ....+.|++|||+++....++...... ...++ ..++++|+||+|.+
T Consensus 80 ~~~~d~~~~~~~~~~~~~g~~~~~~~r~~~~~~~p~illT~p~~l~~llr~~~~~~~~~~~~~~--~~~~~iV~DE~H~~ 157 (357)
T TIGR03158 80 ATLKDIKEYANDKVGSSKGEKLYNLLRNPIGTSTPIILLTNPDIFVYLTRFAYIDRGDIAAGFY--TKFSTVIFDEFHLY 157 (357)
T ss_pred CchHHHHHhhhhhcccCccchhhhhHHHHHhcCCCCEEEecHHHHHHHHhhhccCcccchhhhh--cCCCEEEEeccccc
Confidence 41110 013578899999999754322100000 01112 57899999999999
Q ss_pred CchH---------HHHHHHhcc-cceEEEEcccCCCCcchHhhhHhh--hCCceeeec--------HHHHHh----CCCc
Q 010367 158 PAHM---------FRKVISLTK-SHCKLGLTATLVREDERITDLNFL--IGPKLYEAN--------WLDLVK----GGFI 213 (512)
Q Consensus 158 ~~~~---------~~~~l~~~~-~~~~l~LTATp~~~~~~~~~l~~l--~gp~~~~~~--------~~~l~~----~~~l 213 (512)
.... +..++.... ..++++|||||.. .....+... +|..+.... ..++.. .++.
T Consensus 158 ~~~~~~~~~~~l~~~~~~~~~~~~~~~i~lSAT~~~--~~~~~l~~~~~~~~~~~~v~g~~~~~~~~~~~~~~~~~~~~~ 235 (357)
T TIGR03158 158 DAKQLVGMLFLLAYMQLIRFFECRRKFVFLSATPDP--ALILRLQNAKQAGVKIAPIDGEKYQFPDNPELEADNKTQSFR 235 (357)
T ss_pred CcccchhhhhhhHHHHHHHhhhcCCcEEEEecCCCH--HHHHHHHhccccCceeeeecCcccccCCChhhhccccccccc
Confidence 8532 112222111 3478999999963 222223322 222211100 011111 0111
Q ss_pred ---ccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCC
Q 010367 214 ---ANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK 290 (512)
Q Consensus 214 ---~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~ 290 (512)
.++...... ......+.+ ...+..+.+......+.++||||+++..++.++..|..
T Consensus 236 ~~~~~i~~~~~~---~~~~~~~~l------------------~~l~~~i~~~~~~~~~~k~LIf~nt~~~~~~l~~~L~~ 294 (357)
T TIGR03158 236 PVLPPVELELIP---APDFKEEEL------------------SELAEEVIERFRQLPGERGAIILDSLDEVNRLSDLLQQ 294 (357)
T ss_pred eeccceEEEEEe---CCchhHHHH------------------HHHHHHHHHHHhccCCCeEEEEECCHHHHHHHHHHHhh
Confidence 112211111 111111111 01222233333223577999999999999999999942
Q ss_pred -------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhccc
Q 010367 291 -------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRIL 357 (512)
Q Consensus 291 -------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~ 357 (512)
..+||.+++.+|.+.. +.++||+|+++++|||+|.. +|| ++ +. +...|+||+||+|
T Consensus 295 ~~~~~~~~~l~g~~~~~~R~~~~-------~~~iLVaTdv~~rGiDi~~~-~vi-~~-p~-~~~~yiqR~GR~g 357 (357)
T TIGR03158 295 QGLGDDIGRITGFAPKKDRERAM-------QFDILLGTSTVDVGVDFKRD-WLI-FS-AR-DAAAFWQRLGRLG 357 (357)
T ss_pred hCCCceEEeeecCCCHHHHHHhc-------cCCEEEEecHHhcccCCCCc-eEE-EC-CC-CHHHHhhhcccCC
Confidence 2489999999987653 67899999999999999975 555 44 43 8999999999986
No 72
>KOG0326 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=3.2e-28 Score=227.20 Aligned_cols=303 Identities=18% Similarity=0.188 Sum_probs=216.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-C-----CCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.+-|.|+++++-.+.+. +.+.-+-.|+|||-.+..+..+. . -..+|++|+++|+-|..+........-...
T Consensus 107 kPSPiQeesIPiaLtGr---diLaRaKNGTGKT~a~~IP~Lekid~~~~~IQ~~ilVPtrelALQtSqvc~~lskh~~i~ 183 (459)
T KOG0326|consen 107 KPSPIQEESIPIALTGR---DILARAKNGTGKTAAYCIPVLEKIDPKKNVIQAIILVPTRELALQTSQVCKELSKHLGIK 183 (459)
T ss_pred CCCCccccccceeecch---hhhhhccCCCCCccceechhhhhcCccccceeEEEEeecchhhHHHHHHHHHHhcccCeE
Confidence 57788999999777664 77788999999999987666543 2 268999999999988776665554333456
Q ss_pred EEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHh----c
Q 010367 99 ICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL----T 169 (512)
Q Consensus 99 v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~----~ 169 (512)
+.+.+|+..- ++....+++|+||+.+....++. ...+ .+..++|+|||+.+.+..|..++.. +
T Consensus 184 vmvttGGT~lrDDI~Rl~~~VH~~vgTPGRIlDL~~Kg------Va~l--s~c~~lV~DEADKlLs~~F~~~~e~li~~l 255 (459)
T KOG0326|consen 184 VMVTTGGTSLRDDIMRLNQTVHLVVGTPGRILDLAKKG------VADL--SDCVILVMDEADKLLSVDFQPIVEKLISFL 255 (459)
T ss_pred EEEecCCcccccceeeecCceEEEEcCChhHHHHHhcc------cccc--hhceEEEechhhhhhchhhhhHHHHHHHhC
Confidence 7777776432 13467899999999887653322 2222 4567899999999999877665544 3
Q ss_pred -ccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhc
Q 010367 170 -KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVM 248 (512)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~ 248 (512)
+.+..+++|||.+-.....- -..+ .+-|+.++++-.. ..-...|. -++.
T Consensus 256 P~~rQillySATFP~tVk~Fm-~~~l--~kPy~INLM~eLt-----------------l~GvtQyY----------afV~ 305 (459)
T KOG0326|consen 256 PKERQILLYSATFPLTVKGFM-DRHL--KKPYEINLMEELT-----------------LKGVTQYY----------AFVE 305 (459)
T ss_pred CccceeeEEecccchhHHHHH-HHhc--cCcceeehhhhhh-----------------hcchhhhe----------eeec
Confidence 35688999999863221100 0111 1223344433321 00011111 0111
Q ss_pred CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCC
Q 010367 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (512)
Q Consensus 249 ~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~ 323 (512)
...|+..+..|...+. -...||||+++...+.+|+++ + +.++|+.|.+++|.+++..|++| .++.||||+.
T Consensus 306 e~qKvhCLntLfskLq---INQsIIFCNS~~rVELLAkKITelGyscyyiHakM~Q~hRNrVFHdFr~G-~crnLVctDL 381 (459)
T KOG0326|consen 306 ERQKVHCLNTLFSKLQ---INQSIIFCNSTNRVELLAKKITELGYSCYYIHAKMAQEHRNRVFHDFRNG-KCRNLVCTDL 381 (459)
T ss_pred hhhhhhhHHHHHHHhc---ccceEEEeccchHhHHHHHHHHhccchhhHHHHHHHHhhhhhhhhhhhcc-ccceeeehhh
Confidence 2334455666665554 457899999999999999986 3 45799999999999999999998 9999999999
Q ss_pred CcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
+.+|||++.+|+||.+|.+. ++..|++|+||.||.|. .....+|++-+.
T Consensus 382 ~TRGIDiqavNvVINFDfpk-~aEtYLHRIGRsGRFGh-------------lGlAInLityed 430 (459)
T KOG0326|consen 382 FTRGIDIQAVNVVINFDFPK-NAETYLHRIGRSGRFGH-------------LGLAINLITYED 430 (459)
T ss_pred hhcccccceeeEEEecCCCC-CHHHHHHHccCCccCCC-------------cceEEEEEehhh
Confidence 99999999999999999987 99999999999999884 456677887544
No 73
>KOG0341 consensus DEAD-box protein abstrakt [RNA processing and modification]
Probab=99.95 E-value=4.3e-28 Score=231.50 Aligned_cols=308 Identities=17% Similarity=0.208 Sum_probs=218.5
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH----h--c-------CC-CEEEEEcChhhHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----R--I-------KK-SCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~--~-------~~-~~Lvl~P~~~L~~Qw~~~~ 88 (512)
...+.|.|.++++-++.+. +.|-.+-||||||+++..++. . . .+ --|||||+++|+.|..+-+
T Consensus 190 I~~PTpIQvQGlPvvLsGR---DmIGIAfTGSGKTlvFvLP~imf~LeqE~~lPf~~~EGP~gLiicPSRELArQt~~ii 266 (610)
T KOG0341|consen 190 IVHPTPIQVQGLPVVLSGR---DMIGIAFTGSGKTLVFVLPVIMFALEQEMMLPFARGEGPYGLIICPSRELARQTHDII 266 (610)
T ss_pred CCCCCceeecCcceEeecC---ceeeEEeecCCceEEEeHHHHHHHHHHHhcCccccCCCCeeEEEcCcHHHHHHHHHHH
Confidence 3678999999999888764 889999999999998644431 1 1 12 3699999999999999887
Q ss_pred HHhh------CCCCCcEEEEcCCcc-----ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCC
Q 010367 89 KLWS------TIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (512)
Q Consensus 89 ~~~~------~~~~~~v~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~ 157 (512)
..|+ +.|..+....-|+.. +....+.+|+|+||+.|...... +.+ ...-..++.+|||+++
T Consensus 267 e~~~~~L~e~g~P~lRs~LciGG~~v~eql~~v~~GvHivVATPGRL~DmL~K-----K~~---sLd~CRyL~lDEADRm 338 (610)
T KOG0341|consen 267 EQYVAALQEAGYPELRSLLCIGGVPVREQLDVVRRGVHIVVATPGRLMDMLAK-----KIM---SLDACRYLTLDEADRM 338 (610)
T ss_pred HHHHHHHHhcCChhhhhhhhhcCccHHHHHHHHhcCeeEEEcCcchHHHHHHH-----hhc---cHHHHHHhhhhhHHHH
Confidence 7765 455555555555532 12346789999999988643211 111 1123457999999999
Q ss_pred CchH----HHHHHHhccc-ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHH
Q 010367 158 PAHM----FRKVISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSE 232 (512)
Q Consensus 158 ~~~~----~~~~l~~~~~-~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 232 (512)
..-. .+.+...+++ ++.|++|||.++.-..+ .-..++.|...+........ +.--.-.+
T Consensus 339 iDmGFEddir~iF~~FK~QRQTLLFSATMP~KIQ~F-AkSALVKPvtvNVGRAGAAs---------------ldViQevE 402 (610)
T KOG0341|consen 339 IDMGFEDDIRTIFSFFKGQRQTLLFSATMPKKIQNF-AKSALVKPVTVNVGRAGAAS---------------LDVIQEVE 402 (610)
T ss_pred hhccchhhHHHHHHHHhhhhheeeeeccccHHHHHH-HHhhcccceEEecccccccc---------------hhHHHHHH
Confidence 8754 4556666665 46799999987422211 11234455544433221111 11111224
Q ss_pred HHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHH
Q 010367 233 YLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQ 307 (512)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~ 307 (512)
|++. . ..+.++++.+. ....++||||.++...+.+.++| .+..|||+-.+++|...++
T Consensus 403 yVkq-------------E---aKiVylLeCLQ-KT~PpVLIFaEkK~DVD~IhEYLLlKGVEavaIHGGKDQedR~~ai~ 465 (610)
T KOG0341|consen 403 YVKQ-------------E---AKIVYLLECLQ-KTSPPVLIFAEKKADVDDIHEYLLLKGVEAVAIHGGKDQEDRHYAIE 465 (610)
T ss_pred HHHh-------------h---hhhhhHHHHhc-cCCCceEEEeccccChHHHHHHHHHccceeEEeecCcchhHHHHHHH
Confidence 4421 1 23456666666 66678999999999999999998 3456999999999999999
Q ss_pred HhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcH
Q 010367 308 AFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (512)
Q Consensus 308 ~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~ 387 (512)
.|+.| +-+|||+|++++.|+|+|++.+||+|+.|. ....|+||+||+||.|. ....-+++.+++.
T Consensus 466 afr~g-kKDVLVATDVASKGLDFp~iqHVINyDMP~-eIENYVHRIGRTGRsg~-------------~GiATTfINK~~~ 530 (610)
T KOG0341|consen 466 AFRAG-KKDVLVATDVASKGLDFPDIQHVINYDMPE-EIENYVHRIGRTGRSGK-------------TGIATTFINKNQE 530 (610)
T ss_pred HHhcC-CCceEEEecchhccCCCccchhhccCCChH-HHHHHHHHhcccCCCCC-------------cceeeeeecccch
Confidence 99998 899999999999999999999999998876 99999999999999884 3455567777665
Q ss_pred hh
Q 010367 388 EM 389 (512)
Q Consensus 388 e~ 389 (512)
+.
T Consensus 531 es 532 (610)
T KOG0341|consen 531 ES 532 (610)
T ss_pred HH
Confidence 44
No 74
>PRK09751 putative ATP-dependent helicase Lhr; Provisional
Probab=99.95 E-value=1.4e-26 Score=262.85 Aligned_cols=288 Identities=20% Similarity=0.209 Sum_probs=183.7
Q ss_pred EEcCCCCcHHHHHHHHH-Hhc---------------CCCEEEEEcChhhHHHHHHHHHHhh----------C--CCCCcE
Q 010367 48 IVLPCGAGKSLVGVSAA-CRI---------------KKSCLCLATNAVSVDQWAFQFKLWS----------T--IQDDQI 99 (512)
Q Consensus 48 l~~~tG~GKTl~~i~~i-~~~---------------~~~~Lvl~P~~~L~~Qw~~~~~~~~----------~--~~~~~v 99 (512)
|++|||||||+++..++ ..+ +.++|||+|+++|+.|..++++..+ + .....|
T Consensus 1 V~APTGSGKTLAA~LpaL~~Ll~~~~~~~~~~~~~~~~raLYISPLKALa~Dv~~~L~~pl~~i~~~~~~~g~~~~~i~V 80 (1490)
T PRK09751 1 VIAPTGSGKTLAAFLYALDRLFREGGEDTREAHKRKTSRILYISPIKALGTDVQRNLQIPLKGIADERRRRGETEVNLRV 80 (1490)
T ss_pred CcCCCCcHHHHHHHHHHHHHHHhcccccccccccCCCCEEEEEeChHHHHHHHHHHHHHHHHhhhhhhhhcccccCceEE
Confidence 57899999999988754 222 2369999999999999998886411 1 124578
Q ss_pred EEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----H----HHHHH
Q 010367 100 CRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----M----FRKVI 166 (512)
Q Consensus 100 ~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~----~~~~l 166 (512)
.+++|+.... ....++|+||||++|.....+ +....+ .+..+|||||+|.+... . ..++.
T Consensus 81 ~vrtGDt~~~eR~rll~~ppdILVTTPEsL~~LLts-----k~r~~L--~~Vr~VIVDE~H~L~g~kRG~~Lel~LeRL~ 153 (1490)
T PRK09751 81 GIRTGDTPAQERSKLTRNPPDILITTPESLYLMLTS-----RARETL--RGVETVIIDEVHAVAGSKRGAHLALSLERLD 153 (1490)
T ss_pred EEEECCCCHHHHHHHhcCCCCEEEecHHHHHHHHhh-----hhhhhh--ccCCEEEEecHHHhcccccccHHHHHHHHHH
Confidence 8899875421 235689999999999764221 111233 67889999999999854 2 23333
Q ss_pred Hhcc-cceEEEEcccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCcccceeEEEEcCCCHH-HHHHHHH--hhchHH
Q 010367 167 SLTK-SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLK--KENSKK 241 (512)
Q Consensus 167 ~~~~-~~~~l~LTATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~-~~~~~l~--~~~~~~ 241 (512)
..+. ..++|+||||..+... ...++.+. ...-.. .....+.... +.++.... ....... ......
T Consensus 154 ~l~~~~~QrIgLSATI~n~ee---vA~~L~g~~pv~Iv~------~~~~r~~~l~-v~vp~~d~~~~~~~~~~~~~~~~~ 223 (1490)
T PRK09751 154 ALLHTSAQRIGLSATVRSASD---VAAFLGGDRPVTVVN------PPAMRHPQIR-IVVPVANMDDVSSVASGTGEDSHA 223 (1490)
T ss_pred HhCCCCCeEEEEEeeCCCHHH---HHHHhcCCCCEEEEC------CCCCcccceE-EEEecCchhhccccccccccccch
Confidence 3332 3579999999964221 12233222 111111 1111111111 11221100 0000000 000000
Q ss_pred HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC--------------------------------
Q 010367 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------------------------- 289 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------------------------------- 289 (512)
.......+ .+...++.... .+.++||||+++..++.++..|+
T Consensus 224 -~r~~~i~~---~v~~~il~~i~--~~~stLVFvNSR~~AE~La~~L~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 297 (1490)
T PRK09751 224 -GREGSIWP---YIETGILDEVL--RHRSTIVFTNSRGLAEKLTARLNELYAARLQRSPSIAVDAAHFESTSGATSNRVQ 297 (1490)
T ss_pred -hhhhhhhH---HHHHHHHHHHh--cCCCEEEECCCHHHHHHHHHHHHHhhhhhccccccccchhhhhhhccccchhccc
Confidence 00000000 11123333332 36789999999999999988773
Q ss_pred ------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 290 ------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 290 ------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
+..+||++++++|..+.+.|++| .+++||||++++.|||++++++||+++.|. |...|+||+||+||..
T Consensus 298 ~~~~~ia~~HHGsLSkeeR~~IE~~fK~G-~LrvLVATssLELGIDIg~VDlVIq~gsP~-sVas~LQRiGRAGR~~ 372 (1490)
T PRK09751 298 SSDVFIARSHHGSVSKEQRAITEQALKSG-ELRCVVATSSLELGIDMGAVDLVIQVATPL-SVASGLQRIGRAGHQV 372 (1490)
T ss_pred cccceeeeeccccCCHHHHHHHHHHHHhC-CceEEEeCcHHHccCCcccCCEEEEeCCCC-CHHHHHHHhCCCCCCC
Confidence 12578999999999999999998 999999999999999999999999998887 9999999999999964
No 75
>COG0553 HepA Superfamily II DNA/RNA helicases, SNF2 family [Transcription / DNA replication, recombination, and repair]
Probab=99.95 E-value=2e-26 Score=261.57 Aligned_cols=353 Identities=19% Similarity=0.277 Sum_probs=246.6
Q ss_pred CCCCcHHHHHHHHHHHh--CCCCcceEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 23 HAQPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
..+|||||.++++++.. .....+++++++||+|||+++++++... .+++||+||++ ++.+|.++|.+|.
T Consensus 336 ~~~lr~yq~~g~~wl~~~l~~~~~~~ilaD~mglGKTiq~i~~l~~~~~~~~~~~~~~liv~p~s-~~~nw~~e~~k~~- 413 (866)
T COG0553 336 SAELRPYQLEGVNWLSELLRSNLLGGILADDMGLGKTVQTIALLLSLLESIKVYLGPALIVVPAS-LLSNWKREFEKFA- 413 (866)
T ss_pred hhhhHHHHHHHHHHHHHHHHhccCCCcccccccchhHHHHHHHHHhhhhcccCCCCCeEEEecHH-HHHHHHHHHhhhC-
Confidence 36799999999998652 2223589999999999999999888642 24899999977 5999999999984
Q ss_pred CCCCc-EEEEcCCccc------ccc---C-----CCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 94 IQDDQ-ICRFTSDSKE------RFR---G-----NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 94 ~~~~~-v~~~~~~~~~------~~~---~-----~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
+... +..++|.... .+. . ..+++++||+.+.... .....+....|+.+|+||+|.++
T Consensus 414 -~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~v~itty~~l~~~~-------~~~~~l~~~~~~~~v~DEa~~ik 485 (866)
T COG0553 414 -PDLRLVLVYHGEKSELDKKREALRDLLKLHLVIIFDVVITTYELLRRFL-------VDHGGLKKIEWDRVVLDEAHRIK 485 (866)
T ss_pred -ccccceeeeeCCcccccHHHHHHHHHhhhcccceeeEEechHHHHHHhh-------hhHHHHhhceeeeeehhhHHHHh
Confidence 4445 7777776531 111 1 2789999999997621 12455667899999999999998
Q ss_pred chH--HHHHHHhcccceEEEEcccCCCCcch-HhhhHh-hhCCceeeec---HH--------------------------
Q 010367 159 AHM--FRKVISLTKSHCKLGLTATLVREDER-ITDLNF-LIGPKLYEAN---WL-------------------------- 205 (512)
Q Consensus 159 ~~~--~~~~l~~~~~~~~l~LTATp~~~~~~-~~~l~~-l~gp~~~~~~---~~-------------------------- 205 (512)
+.. -...+..++...++.|||||..+... ...+.. ++.|..+... +.
T Consensus 486 n~~s~~~~~l~~~~~~~~~~LtgTPlen~l~eL~sl~~~f~~p~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~l 565 (866)
T COG0553 486 NDQSSEGKALQFLKALNRLDLTGTPLENRLGELWSLLQEFLNPGLLGTSFAIFTRLFEKPIQAEEDIGPLEARELGIELL 565 (866)
T ss_pred hhhhHHHHHHHHHhhcceeeCCCChHhhhHHHHHHHHHHHhCCccccchHHHHHHHHhhhhhhcccccchhhHHHHHHHH
Confidence 762 22233477788899999999754322 223344 5555443311 00
Q ss_pred -HHHhCC-------------CcccceeEEEEcCCCHH---HHHHHHH---hhch-------H----------HHHHH---
Q 010367 206 -DLVKGG-------------FIANVQCAEVWCPMTKE---FFSEYLK---KENS-------K----------KKQAL--- 245 (512)
Q Consensus 206 -~l~~~~-------------~l~~~~~~~~~~~~~~~---~~~~~l~---~~~~-------~----------~~~~~--- 245 (512)
.++... .+.+.....+.|.++.. .|..++. .... . ....+
T Consensus 566 ~~~i~~f~lrr~k~~~~v~~~Lp~k~e~~~~~~l~~~q~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~ 645 (866)
T COG0553 566 RKLLSPFILRRTKEDVEVLKELPPKIEKVLECELSEEQRELYEALLEGAEKNQQLLEDLEKADSDENRIGDSELNILALL 645 (866)
T ss_pred HHHHHHHhhcccccchhHHHhCChhhhhhhhhcccHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhhHHHHHH
Confidence 101000 11112222334445442 2333331 0000 0 00000
Q ss_pred ------h-----hcCc------------------------------chHHHHHHHH-HHhhhcCCC--eEEEEecCHHHH
Q 010367 246 ------Y-----VMNP------------------------------NKFRACEFLI-RFHEQQRGD--KIIVFADNLFAL 281 (512)
Q Consensus 246 ------~-----~~~~------------------------------~k~~~l~~ll-~~~~~~~g~--k~iVf~~~~~~~ 281 (512)
+ .... .|...+..++ .... ..|+ +++||++++..+
T Consensus 646 ~~lr~~~~~p~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~k~~~l~~ll~~~~~-~~~~~~kvlifsq~t~~l 724 (866)
T COG0553 646 TRLRQICNHPALVDEGLEATFDRIVLLLREDKDFDYLKKPLIQLSKGKLQALDELLLDKLL-EEGHYHKVLIFSQFTPVL 724 (866)
T ss_pred HHHHHhccCccccccccccccchhhhhhhcccccccccchhhhccchHHHHHHHHHHHHHH-hhcccccEEEEeCcHHHH
Confidence 0 0011 6777888888 4554 5677 999999999999
Q ss_pred HHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEE-eCCCcccccCccccEEEEecCCCCCHHHHHHHhhc
Q 010367 282 TEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGR 355 (512)
Q Consensus 282 ~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~-t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR 355 (512)
+.+...|. ...++|+++...|..++++|++++...|++. +++|+.|+|+..+++||++++|| ||....|+++|
T Consensus 725 ~il~~~l~~~~~~~~~ldG~~~~~~r~~~i~~f~~~~~~~v~lls~kagg~glnLt~a~~vi~~d~~w-np~~~~Qa~dR 803 (866)
T COG0553 725 DLLEDYLKALGIKYVRLDGSTPAKRRQELIDRFNADEEEKVFLLSLKAGGLGLNLTGADTVILFDPWW-NPAVELQAIDR 803 (866)
T ss_pred HHHHHHHHhcCCcEEEEeCCCChhhHHHHHHHhhcCCCCceEEEEecccccceeecccceEEEecccc-ChHHHHHHHHH
Confidence 99988883 3458999999999999999999755666665 68999999999999999998887 99999999999
Q ss_pred ccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHH
Q 010367 356 ILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (512)
Q Consensus 356 ~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~ 398 (512)
+||+| |.+.+.+|.+++.+|+|+.+......+
T Consensus 804 a~Rig-----------Q~~~v~v~r~i~~~tiEe~i~~~~~~K 835 (866)
T COG0553 804 AHRIG-----------QKRPVKVYRLITRGTIEEKILELQEKK 835 (866)
T ss_pred HHHhc-----------CcceeEEEEeecCCcHHHHHHHHHHHH
Confidence 99999 666799999999999999887665554
No 76
>KOG0347 consensus RNA helicase [RNA processing and modification]
Probab=99.95 E-value=6.2e-28 Score=239.73 Aligned_cols=313 Identities=16% Similarity=0.153 Sum_probs=208.1
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c----------------CCC--EEEEEcChhhHHHHH
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----------------KKS--CLCLATNAVSVDQWA 85 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~----------------~~~--~Lvl~P~~~L~~Qw~ 85 (512)
.+.|.|...|+.+..+. .+.+-.++||||||+++-.++.. + +.+ .||++||++|+-|..
T Consensus 203 ~Pt~IQsl~lp~ai~gk--~DIlGaAeTGSGKTLAFGIPiv~~l~~~s~~s~e~~~~~~k~~k~~~LV~tPTRELa~QV~ 280 (731)
T KOG0347|consen 203 RPTEIQSLVLPAAIRGK--VDILGAAETGSGKTLAFGIPIVERLLESSDDSQELSNTSAKYVKPIALVVTPTRELAHQVK 280 (731)
T ss_pred CCccchhhcccHhhccc--hhcccccccCCCceeeecchhhhhhhhccchHhhhhhHHhccCcceeEEecChHHHHHHHH
Confidence 67888888888877663 27888999999999996544432 1 123 899999999999999
Q ss_pred HHHHHhhCCCCCcEEEEcCCcc-----ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 86 FQFKLWSTIQDDQICRFTSDSK-----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~-----~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
+.|......+...+..++|+.. ..+...++|||+||+.|....+..+ .++..+ .+..++|+||++++...
T Consensus 281 ~Hl~ai~~~t~i~v~si~GGLavqKQqRlL~~~p~IVVATPGRlweli~e~n---~~l~~~--k~vkcLVlDEaDRmvek 355 (731)
T KOG0347|consen 281 QHLKAIAEKTQIRVASITGGLAVQKQQRLLNQRPDIVVATPGRLWELIEEDN---THLGNF--KKVKCLVLDEADRMVEK 355 (731)
T ss_pred HHHHHhccccCeEEEEeechhHHHHHHHHHhcCCCEEEecchHHHHHHHhhh---hhhhhh--hhceEEEEccHHHHhhh
Confidence 9999877667778888888742 2235679999999999987654332 223333 56789999999999865
Q ss_pred ----HHHHHHHhcc------cceEEEEcccCCCCcchHhhhHhhhCCc----eeeecHHHHH-hCCCcccceeEEEEcCC
Q 010367 161 ----MFRKVISLTK------SHCKLGLTATLVREDERITDLNFLIGPK----LYEANWLDLV-KGGFIANVQCAEVWCPM 225 (512)
Q Consensus 161 ----~~~~~l~~~~------~~~~l~LTATp~~~~~~~~~l~~l~gp~----~~~~~~~~l~-~~~~l~~~~~~~~~~~~ 225 (512)
.+..++..+. ..+.+.+|||..-.-.. .+...-..+ -+......++ +-|+-.++.+. +.
T Consensus 356 ghF~Els~lL~~L~e~~~~~qrQTlVFSATlt~~~~~--~~~~~~k~~~k~~~~~~kiq~Lmk~ig~~~kpkii----D~ 429 (731)
T KOG0347|consen 356 GHFEELSKLLKHLNEEQKNRQRQTLVFSATLTLVLQQ--PLSSSRKKKDKEDELNAKIQHLMKKIGFRGKPKII----DL 429 (731)
T ss_pred ccHHHHHHHHHHhhhhhcccccceEEEEEEeehhhcC--hhHHhhhccchhhhhhHHHHHHHHHhCccCCCeeE----ec
Confidence 4555666554 23679999997521000 000000000 0001111111 11222222211 22
Q ss_pred CHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---CC--ceeCCCCHH
Q 010367 226 TKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---KP--MIYGATSHV 300 (512)
Q Consensus 226 ~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---~~--~i~g~~~~~ 300 (512)
++..-. .......++.+....|--.|-+++.. . +.++|||||+++++..++.+|+ ++ .+|..|.+.
T Consensus 430 t~q~~t-----a~~l~Es~I~C~~~eKD~ylyYfl~r---y-PGrTlVF~NsId~vKRLt~~L~~L~i~p~~LHA~M~QK 500 (731)
T KOG0347|consen 430 TPQSAT-----ASTLTESLIECPPLEKDLYLYYFLTR---Y-PGRTLVFCNSIDCVKRLTVLLNNLDIPPLPLHASMIQK 500 (731)
T ss_pred CcchhH-----HHHHHHHhhcCCccccceeEEEEEee---c-CCceEEEechHHHHHHHHHHHhhcCCCCchhhHHHHHH
Confidence 211100 00111112222111121122222221 2 3489999999999999999885 33 489999999
Q ss_pred HHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 301 eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
.|.+-+++|++. .-.||+||+++++|+|+|++.+||+|.-|. +...|+||.||+.|++.
T Consensus 501 qRLknLEkF~~~-~~~VLiaTDVAARGLDIp~V~HVIHYqVPr-tseiYVHRSGRTARA~~ 559 (731)
T KOG0347|consen 501 QRLKNLEKFKQS-PSGVLIATDVAARGLDIPGVQHVIHYQVPR-TSEIYVHRSGRTARANS 559 (731)
T ss_pred HHHHhHHHHhcC-CCeEEEeehhhhccCCCCCcceEEEeecCC-ccceeEecccccccccC
Confidence 999999999997 788999999999999999999999997775 88999999999999984
No 77
>KOG0339 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.95 E-value=4.5e-27 Score=231.37 Aligned_cols=306 Identities=19% Similarity=0.239 Sum_probs=215.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-------cC---CC-EEEEEcChhhHHHHHHHHHHhh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-------IK---KS-CLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-------~~---~~-~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
.+++|.|-.+++-.+... ..+-.+-||+|||-+++..+.- +. +| .||+||+++|+.|...+.++|.
T Consensus 244 ~kptpiq~qalptalsgr---dvigIAktgSgktaAfi~pm~~himdq~eL~~g~gPi~vilvPTrela~Qi~~eaKkf~ 320 (731)
T KOG0339|consen 244 EKPTPIQCQALPTALSGR---DVIGIAKTGSGKTAAFIWPMIVHIMDQPELKPGEGPIGVILVPTRELASQIFSEAKKFG 320 (731)
T ss_pred ccCCcccccccccccccc---cchheeeccCcchhHHHHHHHHHhcchhhhcCCCCCeEEEEeccHHHHHHHHHHHHHhh
Confidence 467778888888666553 7888899999999988776632 21 34 5788899999999999999985
Q ss_pred CC-CCCcEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHH-
Q 010367 93 TI-QDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVI- 166 (512)
Q Consensus 93 ~~-~~~~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l- 166 (512)
.. ....|++|.|+.+.. +..++.|||+||+.|....+ +....-.+..++|+||++++....|...+
T Consensus 321 K~ygl~~v~~ygGgsk~eQ~k~Lk~g~EivVaTPgRlid~Vk--------mKatn~~rvS~LV~DEadrmfdmGfe~qVr 392 (731)
T KOG0339|consen 321 KAYGLRVVAVYGGGSKWEQSKELKEGAEIVVATPGRLIDMVK--------MKATNLSRVSYLVLDEADRMFDMGFEPQVR 392 (731)
T ss_pred hhccceEEEeecCCcHHHHHHhhhcCCeEEEechHHHHHHHH--------hhcccceeeeEEEEechhhhhccccHHHHH
Confidence 33 333566777765532 35779999999998875422 22222256789999999999976555444
Q ss_pred ---Hhcc-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHH
Q 010367 167 ---SLTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (512)
Q Consensus 167 ---~~~~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (512)
..+. .++.|++|||....-.+.. -..|.+|+.. ....+.+.. ..-.
T Consensus 393 SI~~hirpdrQtllFsaTf~~kIe~la-rd~L~dpVrv------------------Vqg~vgean-----------~dIT 442 (731)
T KOG0339|consen 393 SIKQHIRPDRQTLLFSATFKKKIEKLA-RDILSDPVRV------------------VQGEVGEAN-----------EDIT 442 (731)
T ss_pred HHHhhcCCcceEEEeeccchHHHHHHH-HHHhcCCeeE------------------EEeehhccc-----------cchh
Confidence 4443 3578999999864322211 0123334322 111111110 0001
Q ss_pred HHHhhc--CcchHHHH-HHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCC
Q 010367 243 QALYVM--NPNKFRAC-EFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRD 314 (512)
Q Consensus 243 ~~~~~~--~~~k~~~l-~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~ 314 (512)
+.+.++ ...|+..+ ..|..+. ...++|+|+.....++.++..| ++..+||++.+.+|.++|..|+.. .
T Consensus 443 Q~V~V~~s~~~Kl~wl~~~L~~f~---S~gkvlifVTKk~~~e~i~a~Lklk~~~v~llhgdkdqa~rn~~ls~fKkk-~ 518 (731)
T KOG0339|consen 443 QTVSVCPSEEKKLNWLLRHLVEFS---SEGKVLIFVTKKADAEEIAANLKLKGFNVSLLHGDKDQAERNEVLSKFKKK-R 518 (731)
T ss_pred heeeeccCcHHHHHHHHHHhhhhc---cCCcEEEEEeccCCHHHHHHHhccccceeeeecCchhhHHHHHHHHHHhhc-C
Confidence 111111 12233332 2333333 2448999999999999999998 456799999999999999999997 8
Q ss_pred ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHh
Q 010367 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (512)
Q Consensus 315 ~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (512)
..||++|++..+|+|+|++.+||+++.-. +...+.||+||.+|.|. ....|+||+....+
T Consensus 519 ~~VlvatDvaargldI~~ikTVvnyD~ar-dIdththrigrtgRag~-------------kGvayTlvTeKDa~ 578 (731)
T KOG0339|consen 519 KPVLVATDVAARGLDIPSIKTVVNYDFAR-DIDTHTHRIGRTGRAGE-------------KGVAYTLVTEKDAE 578 (731)
T ss_pred CceEEEeeHhhcCCCccccceeecccccc-hhHHHHHHhhhcccccc-------------cceeeEEechhhHH
Confidence 99999999999999999999999997755 99999999999999884 37789999977655
No 78
>PHA02653 RNA helicase NPH-II; Provisional
Probab=99.95 E-value=1.4e-25 Score=240.36 Aligned_cols=287 Identities=17% Similarity=0.191 Sum_probs=182.5
Q ss_pred HHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHH----------HHHh--------cCCCEEEEEcChhhHHHHHHHHHH
Q 010367 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS----------AACR--------IKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~----------~i~~--------~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
.|+++++.+..+. ..++.++||+|||.+.-. .+.. ..++++|++|+++|+.|...++.+
T Consensus 168 iQ~qil~~i~~gk---dvIv~A~TGSGKTtqvPq~l~~~~flf~~l~~l~~~~~~~~~~~ilvt~PrreLa~qi~~~i~~ 244 (675)
T PHA02653 168 VQLKIFEAWISRK---PVVLTGGTGVGKTSQVPKLLLWFNYLFGGFDNLDKIDPNFIERPIVLSLPRVALVRLHSITLLK 244 (675)
T ss_pred HHHHHHHHHHhCC---CEEEECCCCCCchhHHHHHHHHhhhccchhhhhhhcccccCCcEEEEECcHHHHHHHHHHHHHH
Confidence 3777888777665 899999999999987311 1111 124799999999999999999987
Q ss_pred hhCC---CCCcEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--H
Q 010367 91 WSTI---QDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--M 161 (512)
Q Consensus 91 ~~~~---~~~~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~ 161 (512)
..+. ....+.+..|+..+. .....+|+|+|..... ..+ ..+++||+||||..... .
T Consensus 245 ~vg~~~~~g~~v~v~~Gg~~~~~~~t~~k~~~Ilv~T~~L~l-------------~~L--~~v~~VVIDEaHEr~~~~Dl 309 (675)
T PHA02653 245 SLGFDEIDGSPISLKYGSIPDELINTNPKPYGLVFSTHKLTL-------------NKL--FDYGTVIIDEVHEHDQIGDI 309 (675)
T ss_pred HhCccccCCceEEEEECCcchHHhhcccCCCCEEEEeCcccc-------------ccc--ccCCEEEccccccCccchhH
Confidence 6544 234455556654321 1234679999965321 112 57899999999998754 2
Q ss_pred HHHHHHhcc--cceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhc
Q 010367 162 FRKVISLTK--SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN 238 (512)
Q Consensus 162 ~~~~l~~~~--~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~ 238 (512)
...++.... .++.++||||+...-.. +..+++ |...... .....+++...+.....+.....|+..
T Consensus 310 lL~llk~~~~~~rq~ILmSATl~~dv~~---l~~~~~~p~~I~I~------grt~~pV~~~yi~~~~~~~~~~~y~~~-- 378 (675)
T PHA02653 310 IIAVARKHIDKIRSLFLMTATLEDDRDR---IKEFFPNPAFVHIP------GGTLFPISEVYVKNKYNPKNKRAYIEE-- 378 (675)
T ss_pred HHHHHHHhhhhcCEEEEEccCCcHhHHH---HHHHhcCCcEEEeC------CCcCCCeEEEEeecCcccccchhhhHH--
Confidence 222332221 23689999999643222 333443 4443321 111233333322222111111111100
Q ss_pred hHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-------CCceeCCCCHHHHHHHHHHh-h
Q 010367 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAF-K 310 (512)
Q Consensus 239 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~il~~F-~ 310 (512)
.+..++..+..... ..+.++|||++++..++.+++.|. +..+||++++. ++.+++| +
T Consensus 379 ------------~k~~~l~~L~~~~~-~~~g~iLVFlpg~~ei~~l~~~L~~~~~~~~v~~LHG~Lsq~--eq~l~~ff~ 443 (675)
T PHA02653 379 ------------EKKNIVTALKKYTP-PKGSSGIVFVASVSQCEEYKKYLEKRLPIYDFYIIHGKVPNI--DEILEKVYS 443 (675)
T ss_pred ------------HHHHHHHHHHHhhc-ccCCcEEEEECcHHHHHHHHHHHHhhcCCceEEeccCCcCHH--HHHHHHHhc
Confidence 11122222222211 235689999999999999998884 23589999974 5677787 5
Q ss_pred CCCCccEEEEeCCCcccccCccccEEEEec---CC--------CCCHHHHHHHhhcccccC
Q 010367 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQIS---SH--------AGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 311 ~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~---~~--------~~s~~~~~Q~~GR~~R~g 360 (512)
.+ +.+|||+|+++++|||+|++++||.++ .+ |-|...+.||.||+||..
T Consensus 444 ~g-k~kILVATdIAERGIDIp~V~~VID~G~~k~p~~~~g~~~~iSkasa~QRaGRAGR~~ 503 (675)
T PHA02653 444 SK-NPSIIISTPYLESSVTIRNATHVYDTGRVYVPEPFGGKEMFISKSMRTQRKGRVGRVS 503 (675)
T ss_pred cC-ceeEEeccChhhccccccCeeEEEECCCccCCCcccCcccccCHHHHHHhccCcCCCC
Confidence 65 899999999999999999999999874 11 127889999999999986
No 79
>KOG0332 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=1.2e-25 Score=214.29 Aligned_cols=321 Identities=17% Similarity=0.192 Sum_probs=215.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-hcC-----CCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.+-..|+.|++-++.+. +++.|-.+..|+|||.++...+. +.. -.+++|+|+++|+.|..+.+.+-.......
T Consensus 112 kPskIQe~aLPlll~~P-p~nlIaQsqsGtGKTaaFvL~MLsrvd~~~~~PQ~iCLaPtrELA~Q~~eVv~eMGKf~~it 190 (477)
T KOG0332|consen 112 KPSKIQETALPLLLAEP-PQNLIAQSQSGTGKTAAFVLTMLSRVDPDVVVPQCICLAPTRELAPQTGEVVEEMGKFTELT 190 (477)
T ss_pred CcchHHHhhcchhhcCC-chhhhhhhcCCCchhHHHHHHHHHhcCccccCCCceeeCchHHHHHHHHHHHHHhcCceeee
Confidence 35567999999877764 46888889999999999766654 332 368999999999999999888765444222
Q ss_pred EEE-EcCC-ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHhcc-
Q 010367 99 ICR-FTSD-SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK- 170 (512)
Q Consensus 99 v~~-~~~~-~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~~~- 170 (512)
+.. +.++ .++.-.-...|+|.|++.+..... .+..+......++|+|||+.+.+. .-.++...++
T Consensus 191 a~yair~sk~~rG~~i~eqIviGTPGtv~Dlm~-------klk~id~~kikvfVlDEAD~Mi~tqG~~D~S~rI~~~lP~ 263 (477)
T KOG0332|consen 191 ASYAIRGSKAKRGNKLTEQIVIGTPGTVLDLML-------KLKCIDLEKIKVFVLDEADVMIDTQGFQDQSIRIMRSLPR 263 (477)
T ss_pred EEEEecCcccccCCcchhheeeCCCccHHHHHH-------HHHhhChhhceEEEecchhhhhhcccccccchhhhhhcCC
Confidence 222 2222 121122346799999998875421 122333367789999999998864 2344555555
Q ss_pred cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCc
Q 010367 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (512)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 250 (512)
....|++|||......... +..+=.|........++ .+.++....+ .+....
T Consensus 264 ~~QllLFSATf~e~V~~Fa-~kivpn~n~i~Lk~eel----~L~~IkQlyv-----------------------~C~~~~ 315 (477)
T KOG0332|consen 264 NQQLLLFSATFVEKVAAFA-LKIVPNANVIILKREEL----ALDNIKQLYV-----------------------LCACRD 315 (477)
T ss_pred cceEEeeechhHHHHHHHH-HHhcCCCceeeeehhhc----cccchhhhee-----------------------eccchh
Confidence 4578999999853211100 00000111111111111 1112211222 233344
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
+|++++..|..... -...||||.++..+..++..+ .+..+||++...+|..++++|+.| ..+|||+|++.+
T Consensus 316 ~K~~~l~~lyg~~t---igqsiIFc~tk~ta~~l~~~m~~~Gh~V~~l~G~l~~~~R~~ii~~Fr~g-~~kVLitTnV~A 391 (477)
T KOG0332|consen 316 DKYQALVNLYGLLT---IGQSIIFCHTKATAMWLYEEMRAEGHQVSLLHGDLTVEQRAAIIDRFREG-KEKVLITTNVCA 391 (477)
T ss_pred hHHHHHHHHHhhhh---hhheEEEEeehhhHHHHHHHHHhcCceeEEeeccchhHHHHHHHHHHhcC-cceEEEEechhh
Confidence 67777777665443 347899999999999999999 367899999999999999999998 999999999999
Q ss_pred ccccCccccEEEEecCCC-----CCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHH
Q 010367 326 NSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (512)
Q Consensus 326 ~GlDlp~~~~vI~~~~~~-----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (512)
+|||++.+++||+|+-|. ..+..|+||+||+||.|+ .+..++++..+. .+.+..+-|+++
T Consensus 392 RGiDv~qVs~VvNydlP~~~~~~pD~etYlHRiGRtGRFGk-------------kG~a~n~v~~~~-s~~~mn~iq~~F 456 (477)
T KOG0332|consen 392 RGIDVAQVSVVVNYDLPVKYTGEPDYETYLHRIGRTGRFGK-------------KGLAINLVDDKD-SMNIMNKIQKHF 456 (477)
T ss_pred cccccceEEEEEecCCccccCCCCCHHHHHHHhcccccccc-------------cceEEEeecccC-cHHHHHHHHHHH
Confidence 999999999999985542 278899999999999985 355666776443 233333444444
No 80
>KOG0344 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.94 E-value=2.9e-26 Score=230.93 Aligned_cols=296 Identities=16% Similarity=0.171 Sum_probs=208.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c----------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
..+.|.|..|+.-++... .++.++|||+|||+.+..++.. + +-+.+|+.|+++|+.|.+.++.++.
T Consensus 157 ~~Pt~iq~~aipvfl~~r---~~lAcapTGsgKtlaf~~Pil~~L~~~~~~~~~~gl~a~Il~ptreLa~Qi~re~~k~~ 233 (593)
T KOG0344|consen 157 DEPTPIQKQAIPVFLEKR---DVLACAPTGSGKTLAFNLPILQHLKDLSQEKHKVGLRALILSPTRELAAQIYREMRKYS 233 (593)
T ss_pred CCCCcccchhhhhhhccc---ceEEeccCCCcchhhhhhHHHHHHHHhhcccCccceEEEEecchHHHHHHHHHHHHhcC
Confidence 368899999999887764 8999999999999998877632 1 2379999999999999999999985
Q ss_pred --CCCCCcEEEEcCCcc------ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHH
Q 010367 93 --TIQDDQICRFTSDSK------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR 163 (512)
Q Consensus 93 --~~~~~~v~~~~~~~~------~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~ 163 (512)
......+..++.... ......++|+|+||..+........ . .+.......+|+||++++..+ .|.
T Consensus 234 ~~~~t~~~a~~~~~~~~~~qk~a~~~~~k~dili~TP~ri~~~~~~~~----~--~idl~~V~~lV~dEaD~lfe~~~f~ 307 (593)
T KOG0344|consen 234 IDEGTSLRAAQFSKPAYPSQKPAFLSDEKYDILISTPMRIVGLLGLGK----L--NIDLSKVEWLVVDEADLLFEPEFFV 307 (593)
T ss_pred CCCCCchhhhhcccccchhhccchhHHHHHHHHhcCHHHHHHHhcCCC----c--cchhheeeeEeechHHhhhChhhHH
Confidence 222233333333211 0112458899999988776533210 0 011245667999999999988 554
Q ss_pred HH----HHhcccc--eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhh
Q 010367 164 KV----ISLTKSH--CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKE 237 (512)
Q Consensus 164 ~~----l~~~~~~--~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~ 237 (512)
.. +....++ ++=++|||..-....|. .++..+.+. +.+...+.. ..
T Consensus 308 ~Qla~I~sac~s~~i~~a~FSat~~~~VEE~~----------------~~i~~~~~~------vivg~~~sa------~~ 359 (593)
T KOG0344|consen 308 EQLADIYSACQSPDIRVALFSATISVYVEEWA----------------ELIKSDLKR------VIVGLRNSA------NE 359 (593)
T ss_pred HHHHHHHHHhcCcchhhhhhhccccHHHHHHH----------------HHhhcccee------EEEecchhH------hh
Confidence 43 3333333 45567888764433332 222222111 111111110 00
Q ss_pred chHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC------CCceeCCCCHHHHHHHHHHhhC
Q 010367 238 NSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPMIYGATSHVERTKILQAFKC 311 (512)
Q Consensus 238 ~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~------~~~i~g~~~~~eR~~il~~F~~ 311 (512)
....+.+.+.....|+-+|..++...- ...++||+++.+.+..+...|. +.++||..++.+|++.+++|+.
T Consensus 360 ~V~QelvF~gse~~K~lA~rq~v~~g~---~PP~lIfVQs~eRak~L~~~L~~~~~i~v~vIh~e~~~~qrde~~~~FR~ 436 (593)
T KOG0344|consen 360 TVDQELVFCGSEKGKLLALRQLVASGF---KPPVLIFVQSKERAKQLFEELEIYDNINVDVIHGERSQKQRDETMERFRI 436 (593)
T ss_pred hhhhhheeeecchhHHHHHHHHHhccC---CCCeEEEEecHHHHHHHHHHhhhccCcceeeEecccchhHHHHHHHHHhc
Confidence 111112233334567888888886543 4579999999999999999984 7789999999999999999999
Q ss_pred CCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 312 SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 312 ~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
| ++.|||||+++++|+|+.++++||++|.+. +-..|++|+||+||+|+
T Consensus 437 g-~IwvLicTdll~RGiDf~gvn~VInyD~p~-s~~syihrIGRtgRag~ 484 (593)
T KOG0344|consen 437 G-KIWVLICTDLLARGIDFKGVNLVINYDFPQ-SDLSYIHRIGRTGRAGR 484 (593)
T ss_pred c-CeeEEEehhhhhccccccCcceEEecCCCc-hhHHHHHHhhccCCCCC
Confidence 8 999999999999999999999999999887 99999999999999996
No 81
>TIGR01970 DEAH_box_HrpB ATP-dependent helicase HrpB. This model represents HrpB, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria, but also in a few species of other lineages. The member from Rhizobium meliloti has been designated HelO. HrpB is typically about 800 residues in length, while its paralog HrpA (TIGR01967), also uncharacterized, is about 1300 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.94 E-value=6.8e-25 Score=240.38 Aligned_cols=269 Identities=19% Similarity=0.177 Sum_probs=178.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCC-CcEEEEcCCccccccCCCeEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
..++.++||+|||.+...++... +.+++|+.|+++++.|..+.+.+.++... ..|+...... ........|+|+|
T Consensus 19 ~vIi~a~TGSGKTT~vpl~lL~~~~~~~~ilvlqPrR~aA~qiA~rva~~~~~~~g~~VGy~vr~~-~~~s~~t~I~v~T 97 (819)
T TIGR01970 19 QVVLEAPPGAGKSTAVPLALLDAPGIGGKIIMLEPRRLAARSAAQRLASQLGEAVGQTVGYRVRGE-NKVSRRTRLEVVT 97 (819)
T ss_pred cEEEECCCCCCHHHHHHHHHHHhhccCCeEEEEeCcHHHHHHHHHHHHHHhCCCcCcEEEEEEccc-cccCCCCcEEEEC
Confidence 89999999999999988776543 46899999999999999999977655432 2344322221 2234557899999
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCC-CCchH----H-HHHHHhcc-cceEEEEcccCCCCcchHhhhHh
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAHM----F-RKVISLTK-SHCKLGLTATLVREDERITDLNF 193 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~-~~~~~----~-~~~l~~~~-~~~~l~LTATp~~~~~~~~~l~~ 193 (512)
++.|..... ....-..+++|||||+|. ..+.. + ..+...+. ..++|+||||+... . +..
T Consensus 98 ~G~Llr~l~---------~d~~L~~v~~VIiDEaHER~L~~Dl~L~ll~~i~~~lr~dlqlIlmSATl~~~--~---l~~ 163 (819)
T TIGR01970 98 EGILTRMIQ---------DDPELDGVGALIFDEFHERSLDADLGLALALDVQSSLREDLKILAMSATLDGE--R---LSS 163 (819)
T ss_pred CcHHHHHHh---------hCcccccCCEEEEeccchhhhccchHHHHHHHHHHhcCCCceEEEEeCCCCHH--H---HHH
Confidence 998864321 111126789999999994 44321 2 23333333 34789999998632 1 233
Q ss_pred hhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHH-HHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeE
Q 010367 194 LIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEF-FSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKI 271 (512)
Q Consensus 194 l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~ 271 (512)
+++ +..... .|-..++.... .+..... +...+ ...+..++. ..+.++
T Consensus 164 ~l~~~~vI~~-------~gr~~pVe~~y--~~~~~~~~~~~~v------------------~~~l~~~l~----~~~g~i 212 (819)
T TIGR01970 164 LLPDAPVVES-------EGRSFPVEIRY--LPLRGDQRLEDAV------------------SRAVEHALA----SETGSI 212 (819)
T ss_pred HcCCCcEEEe-------cCcceeeeeEE--eecchhhhHHHHH------------------HHHHHHHHH----hcCCcE
Confidence 443 222211 12222332222 2211110 00000 012223332 234589
Q ss_pred EEEecCHHHHHHHHHHhCC--------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCC
Q 010367 272 IVFADNLFALTEYAMKLRK--------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHA 343 (512)
Q Consensus 272 iVf~~~~~~~~~l~~~L~~--------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~ 343 (512)
|||+++...++.+++.|.. ..+||++++++|.++++.|..+ ..+|||+|+++++|||+|++++||.+..+.
T Consensus 213 LVFlpg~~eI~~l~~~L~~~~~~~~~v~pLHg~L~~~eq~~~~~~~~~G-~rkVlVATnIAErgItIp~V~~VID~Gl~r 291 (819)
T TIGR01970 213 LVFLPGQAEIRRVQEQLAERLDSDVLICPLYGELSLAAQDRAIKPDPQG-RRKVVLATNIAETSLTIEGIRVVIDSGLAR 291 (819)
T ss_pred EEEECCHHHHHHHHHHHHhhcCCCcEEEEecCCCCHHHHHHHHhhcccC-CeEEEEecchHhhcccccCceEEEEcCccc
Confidence 9999999999998888732 2489999999999999999997 899999999999999999999999863321
Q ss_pred -----------------CCHHHHHHHhhcccccC
Q 010367 344 -----------------GSRRQEAQRLGRILRAK 360 (512)
Q Consensus 344 -----------------~s~~~~~Q~~GR~~R~g 360 (512)
-|...+.||.||+||.+
T Consensus 292 ~~~yd~~~g~~~L~~~~iSkasa~QR~GRAGR~~ 325 (819)
T TIGR01970 292 VARFDPKTGITRLETVRISQASATQRAGRAGRLE 325 (819)
T ss_pred ccccccccCCceeeEEEECHHHHHhhhhhcCCCC
Confidence 14556899999999987
No 82
>PRK09401 reverse gyrase; Reviewed
Probab=99.94 E-value=3.9e-25 Score=250.21 Aligned_cols=282 Identities=17% Similarity=0.206 Sum_probs=188.7
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.+.|+|+|..++..++.+. +.++++|||+|||..++.++..+ +.++|||+||++|+.|+.+.|+.++......+
T Consensus 78 G~~pt~iQ~~~i~~il~g~---dv~i~ApTGsGKT~f~l~~~~~l~~~g~~alIL~PTreLa~Qi~~~l~~l~~~~~~~~ 154 (1176)
T PRK09401 78 GSKPWSLQRTWAKRLLLGE---SFAIIAPTGVGKTTFGLVMSLYLAKKGKKSYIIFPTRLLVEQVVEKLEKFGEKVGCGV 154 (1176)
T ss_pred CCCCcHHHHHHHHHHHCCC---cEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEeccHHHHHHHHHHHHHHhhhcCceE
Confidence 4689999999999988775 99999999999997655544333 46899999999999999999999865444455
Q ss_pred EEEcCCc------ccc----c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc---------
Q 010367 100 CRFTSDS------KER----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (512)
Q Consensus 100 ~~~~~~~------~~~----~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~--------- 159 (512)
..+.++. ++. + .+.++|+|+|++.|... ++.+....++++|+||||++..
T Consensus 155 ~~~~g~~~~~~~ek~~~~~~l~~~~~~IlV~Tp~rL~~~----------~~~l~~~~~~~lVvDEaD~~L~~~k~id~~l 224 (1176)
T PRK09401 155 KILYYHSSLKKKEKEEFLERLKEGDFDILVTTSQFLSKN----------FDELPKKKFDFVFVDDVDAVLKSSKNIDKLL 224 (1176)
T ss_pred EEEEccCCcchhHHHHHHHHHhcCCCCEEEECHHHHHHH----------HHhccccccCEEEEEChHHhhhcccchhhHH
Confidence 5444332 111 1 25689999999988643 3344445699999999999873
Q ss_pred -------hHHHHHHHhcc-------------------------cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHH
Q 010367 160 -------HMFRKVISLTK-------------------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDL 207 (512)
Q Consensus 160 -------~~~~~~l~~~~-------------------------~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l 207 (512)
+....++..++ ..+.+++|||..........+..+++ ++....
T Consensus 225 ~~lGF~~~~i~~i~~~i~~~~~~~~~~~~i~~l~~~i~~~~~~~~q~ilfSAT~~~~~~~~~l~~~ll~---~~v~~~-- 299 (1176)
T PRK09401 225 YLLGFSEEDIEKAMELIRLKRKYEEIYEKIRELEEKIAELKDKKGVLVVSSATGRPRGNRVKLFRELLG---FEVGSP-- 299 (1176)
T ss_pred HhCCCCHHHHHHHHHhcccccccchhhhHHHHHHHhhhhcccCCceEEEEeCCCCccchHHHHhhccce---EEecCc--
Confidence 12333343332 34678999999743222111111111 111100
Q ss_pred HhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHH---HHHH
Q 010367 208 VKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---LTEY 284 (512)
Q Consensus 208 ~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~---~~~l 284 (512)
...+.++....+.++ .|...+..+++.+ +..+||||++... ++.+
T Consensus 300 --~~~~rnI~~~yi~~~--------------------------~k~~~L~~ll~~l----~~~~LIFv~t~~~~~~ae~l 347 (1176)
T PRK09401 300 --VFYLRNIVDSYIVDE--------------------------DSVEKLVELVKRL----GDGGLIFVPSDKGKEYAEEL 347 (1176)
T ss_pred --ccccCCceEEEEEcc--------------------------cHHHHHHHHHHhc----CCCEEEEEecccChHHHHHH
Confidence 001111111111111 2334445555433 4579999998666 9999
Q ss_pred HHHh---C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEE----eCCCcccccCcc-ccEEEEecCCC-----CCHHHH
Q 010367 285 AMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSHA-----GSRRQE 349 (512)
Q Consensus 285 ~~~L---~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~----t~~~~~GlDlp~-~~~vI~~~~~~-----~s~~~~ 349 (512)
++.| + +..+||++ .+.+++|++| +++|||+ |+++++|||+|+ ++.||+++.|. .....+
T Consensus 348 ~~~L~~~gi~v~~~hg~l-----~~~l~~F~~G-~~~VLVatas~tdv~aRGIDiP~~IryVI~y~vP~~~~~~~~~~~~ 421 (1176)
T PRK09401 348 AEYLEDLGINAELAISGF-----ERKFEKFEEG-EVDVLVGVASYYGVLVRGIDLPERIRYAIFYGVPKFKFSLEEELAP 421 (1176)
T ss_pred HHHHHHCCCcEEEEeCcH-----HHHHHHHHCC-CCCEEEEecCCCCceeecCCCCcceeEEEEeCCCCEEEeccccccC
Confidence 9888 2 34699999 2345999998 9999999 689999999999 89999997663 124567
Q ss_pred HHHhhcccccC
Q 010367 350 AQRLGRILRAK 360 (512)
Q Consensus 350 ~Q~~GR~~R~g 360 (512)
.+++||+.+.-
T Consensus 422 ~~~~~r~~~~~ 432 (1176)
T PRK09401 422 PFLLLRLLSLL 432 (1176)
T ss_pred HHHHHHHHhhc
Confidence 89999997554
No 83
>PRK11664 ATP-dependent RNA helicase HrpB; Provisional
Probab=99.94 E-value=1.2e-24 Score=238.98 Aligned_cols=270 Identities=17% Similarity=0.182 Sum_probs=179.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCC-CcEEEEcCCccccccCCCeEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~-~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
..++.+|||+|||.+...++... .++++|++|+++++.|..+.+...++... ..|+...+... .......|+|+|
T Consensus 22 ~vvv~A~TGSGKTt~~pl~lL~~~~~~~~ilvlqPrR~aA~qia~rva~~l~~~~g~~VGy~vr~~~-~~~~~t~I~v~T 100 (812)
T PRK11664 22 QVLLKAPTGAGKSTWLPLQLLQHGGINGKIIMLEPRRLAARNVAQRLAEQLGEKPGETVGYRMRAES-KVGPNTRLEVVT 100 (812)
T ss_pred CEEEEcCCCCCHHHHHHHHHHHcCCcCCeEEEECChHHHHHHHHHHHHHHhCcccCceEEEEecCcc-ccCCCCcEEEEC
Confidence 89999999999999988776543 35899999999999999999987655432 34444333322 123456799999
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC-c-h---H-HHHHHHhcc-cceEEEEcccCCCCcchHhhhHh
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-A-H---M-FRKVISLTK-SHCKLGLTATLVREDERITDLNF 193 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~-~-~---~-~~~~l~~~~-~~~~l~LTATp~~~~~~~~~l~~ 193 (512)
++.|..... ....-..+++||+||+|... . + . ...++..+. ..++++||||+... .+..
T Consensus 101 ~G~Llr~l~---------~d~~L~~v~~IIlDEaHER~l~~Dl~L~ll~~i~~~lr~~lqlilmSATl~~~-----~l~~ 166 (812)
T PRK11664 101 EGILTRMIQ---------RDPELSGVGLVILDEFHERSLQADLALALLLDVQQGLRDDLKLLIMSATLDND-----RLQQ 166 (812)
T ss_pred hhHHHHHHh---------hCCCcCcCcEEEEcCCCccccccchHHHHHHHHHHhCCccceEEEEecCCCHH-----HHHH
Confidence 998864321 11122678999999999733 2 2 1 223333333 34689999999532 1333
Q ss_pred hhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEE
Q 010367 194 LIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKII 272 (512)
Q Consensus 194 l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~i 272 (512)
+++ +..... .|...++... +.+.... .++.. .+ ..++..++ . ..+..+|
T Consensus 167 ~~~~~~~I~~-------~gr~~pV~~~--y~~~~~~---~~~~~------~v--------~~~l~~~l---~-~~~g~iL 216 (812)
T PRK11664 167 LLPDAPVIVS-------EGRSFPVERR--YQPLPAH---QRFDE------AV--------ARATAELL---R-QESGSLL 216 (812)
T ss_pred hcCCCCEEEe-------cCccccceEE--eccCchh---hhHHH------HH--------HHHHHHHH---H-hCCCCEE
Confidence 443 222111 1222232222 2222211 11100 00 01222222 2 2356899
Q ss_pred EEecCHHHHHHHHHHhCC--------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCC--
Q 010367 273 VFADNLFALTEYAMKLRK--------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSH-- 342 (512)
Q Consensus 273 Vf~~~~~~~~~l~~~L~~--------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~-- 342 (512)
||++++..++.+++.|.. ..+||++++.+|.++++.|..+ ..+|||+|+++++|||+|++++||....+
T Consensus 217 VFlpg~~ei~~l~~~L~~~~~~~~~v~~Lhg~l~~~eq~~~~~~~~~G-~rkVlvATnIAErsLtIp~V~~VID~Gl~r~ 295 (812)
T PRK11664 217 LFLPGVGEIQRVQEQLASRVASDVLLCPLYGALSLAEQQKAILPAPAG-RRKVVLATNIAETSLTIEGIRLVVDSGLERV 295 (812)
T ss_pred EEcCCHHHHHHHHHHHHHhccCCceEEEeeCCCCHHHHHHHhccccCC-CeEEEEecchHHhcccccCceEEEECCCccc
Confidence 999999999999988842 2489999999999999999997 89999999999999999999999985321
Q ss_pred ------C---------CCHHHHHHHhhcccccC
Q 010367 343 ------A---------GSRRQEAQRLGRILRAK 360 (512)
Q Consensus 343 ------~---------~s~~~~~Q~~GR~~R~g 360 (512)
. -|...+.||.||+||.+
T Consensus 296 ~~yd~~~g~~~L~~~~iSkasa~QR~GRaGR~~ 328 (812)
T PRK11664 296 ARFDPKTGLTRLVTQRISQASMTQRAGRAGRLE 328 (812)
T ss_pred ccccccCCcceeEEEeechhhhhhhccccCCCC
Confidence 1 14568999999999987
No 84
>KOG4284 consensus DEAD box protein [Transcription]
Probab=99.94 E-value=2.7e-26 Score=231.53 Aligned_cols=298 Identities=18% Similarity=0.209 Sum_probs=220.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c-----CCCEEEEEcChhhHHHHHHHHHHhh-CCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWS-TIQD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~-~~~~ 96 (512)
..+.+.|..||+.++.+- +.|+.+-.|+|||+++..++.. + .-..+||+||++++-|..+.|.... .+.+
T Consensus 46 ~~ptkiQaaAIP~~~~km---DliVQaKSGTGKTlVfsv~av~sl~~~~~~~q~~Iv~PTREiaVQI~~tv~~v~~sf~g 122 (980)
T KOG4284|consen 46 ALPTKIQAAAIPAIFSKM---DLIVQAKSGTGKTLVFSVLAVESLDSRSSHIQKVIVTPTREIAVQIKETVRKVAPSFTG 122 (980)
T ss_pred cCCCchhhhhhhhhhccc---ceEEEecCCCCceEEEEeeeehhcCcccCcceeEEEecchhhhhHHHHHHHHhcccccC
Confidence 356788999999988876 8899999999999997666533 2 2369999999999999999998764 2355
Q ss_pred CcEEEEcCCccccc----cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-hHHHH----HHH
Q 010367 97 DQICRFTSDSKERF----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFRK----VIS 167 (512)
Q Consensus 97 ~~v~~~~~~~~~~~----~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-~~~~~----~l~ 167 (512)
.++.+|.|+..-.. ...++|+|.||+.+..+.+ +..+.-.+..++|+|||+.+.. ..|+. ++.
T Consensus 123 ~~csvfIGGT~~~~d~~rlk~~rIvIGtPGRi~qL~e--------l~~~n~s~vrlfVLDEADkL~~t~sfq~~In~ii~ 194 (980)
T KOG4284|consen 123 ARCSVFIGGTAHKLDLIRLKQTRIVIGTPGRIAQLVE--------LGAMNMSHVRLFVLDEADKLMDTESFQDDINIIIN 194 (980)
T ss_pred cceEEEecCchhhhhhhhhhhceEEecCchHHHHHHH--------hcCCCccceeEEEeccHHhhhchhhHHHHHHHHHH
Confidence 68899999854322 3568899999999876533 2334446788999999999986 45554 444
Q ss_pred hcc-cceEEEEcccCCCCcchHhhhH-hhhCCceeeecHHHHHhCCCcccceeEEEEcCC--CHHHHHHHHHhhchHHHH
Q 010367 168 LTK-SHCKLGLTATLVREDERITDLN-FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPM--TKEFFSEYLKKENSKKKQ 243 (512)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~-~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~ 243 (512)
.++ .++++.+|||-.++-+. .|. ++-.|.+.+.+-.+..--| -.++....|.. +-+..+
T Consensus 195 slP~~rQv~a~SATYp~nLdn--~Lsk~mrdp~lVr~n~~d~~L~G---ikQyv~~~~s~nnsveemr------------ 257 (980)
T KOG4284|consen 195 SLPQIRQVAAFSATYPRNLDN--LLSKFMRDPALVRFNADDVQLFG---IKQYVVAKCSPNNSVEEMR------------ 257 (980)
T ss_pred hcchhheeeEEeccCchhHHH--HHHHHhcccceeecccCCceeec---hhheeeeccCCcchHHHHH------------
Confidence 443 45889999998765332 122 2334555544433322111 11222222221 111122
Q ss_pred HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 244 ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 244 ~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
.|++.+..+.+.+ +-..+||||+....++-++.+|. +.+|.|.|.+.+|...++.+++- .++||
T Consensus 258 -------lklq~L~~vf~~i---py~QAlVF~~~~sra~~~a~~L~ssG~d~~~ISgaM~Q~~Rl~a~~~lr~f-~~rIL 326 (980)
T KOG4284|consen 258 -------LKLQKLTHVFKSI---PYVQALVFCDQISRAEPIATHLKSSGLDVTFISGAMSQKDRLLAVDQLRAF-RVRIL 326 (980)
T ss_pred -------HHHHHHHHHHhhC---chHHHHhhhhhhhhhhHHHHHhhccCCCeEEeccccchhHHHHHHHHhhhc-eEEEE
Confidence 1335566666544 35678999999999999999993 56899999999999999999997 99999
Q ss_pred EEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|+|+..++|||-|.+|.||.+|++- +...|.||+||+||.|.
T Consensus 327 VsTDLtaRGIDa~~vNLVVNiD~p~-d~eTY~HRIGRAgRFG~ 368 (980)
T KOG4284|consen 327 VSTDLTARGIDADNVNLVVNIDAPA-DEETYFHRIGRAGRFGA 368 (980)
T ss_pred EecchhhccCCccccceEEecCCCc-chHHHHHHhhhcccccc
Confidence 9999999999999999999998876 99999999999999994
No 85
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=99.94 E-value=2.2e-25 Score=235.97 Aligned_cols=323 Identities=16% Similarity=0.187 Sum_probs=209.0
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-C------------CCEEEEEcChhhHHHHHHHHHHhh
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K------------KSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~------------~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
+.-.|-++++.++..+. +.+|++|||+|||.++...|.+. + -++++|+|.++|+....+.|.+.+
T Consensus 111 fN~iQS~vFp~aY~Sne--NMLIcAPTGsGKT~la~L~ILr~ik~~~~~~~i~k~~fKiVYIaPmKALa~Em~~~~~kkl 188 (1230)
T KOG0952|consen 111 FNRIQSEVFPVAYKSNE--NMLICAPTGSGKTVLAELCILRTIKEHEEQGDIAKDDFKIVYIAPMKALAAEMVDKFSKKL 188 (1230)
T ss_pred HHHHHHHhhhhhhcCCC--CEEEECCCCCCchHHHHHHHHHHHHhhccccccccCCceEEEEechHHHHHHHHHHHhhhc
Confidence 44568888888887763 99999999999999987777543 2 279999999999999888888765
Q ss_pred CCCCCcEEEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHHHHHH
Q 010367 93 TIQDDQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVIS 167 (512)
Q Consensus 93 ~~~~~~v~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~~~l~ 167 (512)
.--...|..++|+..-. --..++|+||||+.+--..+++.....+. ....|||+||+|.+..+ ....++.
T Consensus 189 ~~~gi~v~ELTGD~ql~~tei~~tqiiVTTPEKwDvvTRk~~~d~~l~-----~~V~LviIDEVHlLhd~RGpvlEtiVa 263 (1230)
T KOG0952|consen 189 APLGISVRELTGDTQLTKTEIADTQIIVTTPEKWDVVTRKSVGDSALF-----SLVRLVIIDEVHLLHDDRGPVLETIVA 263 (1230)
T ss_pred ccccceEEEecCcchhhHHHHHhcCEEEecccceeeeeeeeccchhhh-----hheeeEEeeeehhhcCcccchHHHHHH
Confidence 43355789999985421 13568999999998877766654433332 45689999999999854 3333322
Q ss_pred h--------cccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcc-cceeEEEEcCCCHHHHHHHHHhhc
Q 010367 168 L--------TKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIA-NVQCAEVWCPMTKEFFSEYLKKEN 238 (512)
Q Consensus 168 ~--------~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~-~~~~~~~~~~~~~~~~~~~l~~~~ 238 (512)
. ...-+.+|||||.++-. ++..+++...+. ... .++..|.. |+....+.++..
T Consensus 264 Rtlr~vessqs~IRivgLSATlPN~e----DvA~fL~vn~~~-glf-sFd~~yRPvpL~~~~iG~k~~------------ 325 (1230)
T KOG0952|consen 264 RTLRLVESSQSMIRIVGLSATLPNYE----DVARFLRVNPYA-GLF-SFDQRYRPVPLTQGFIGIKGK------------ 325 (1230)
T ss_pred HHHHHHHhhhhheEEEEeeccCCCHH----HHHHHhcCCCcc-cee-eecccccccceeeeEEeeecc------------
Confidence 2 22347899999997532 233333321110 000 00111111 111111111111
Q ss_pred hHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh----------------------------CC
Q 010367 239 SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------------------RK 290 (512)
Q Consensus 239 ~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----------------------------~~ 290 (512)
..+.....+.. -..+.+++++ ..|+.++|||.++...-..|+.| +.
T Consensus 326 -~~~~~~~~~d~---~~~~kv~e~~--~~g~qVlvFvhsR~~Ti~tA~~l~~~a~~~g~~~~f~~~~~~k~l~elf~~g~ 399 (1230)
T KOG0952|consen 326 -KNRQQKKNIDE---VCYDKVVEFL--QEGHQVLVFVHSRNETIRTAKKLRERAETNGEKDLFLPSPRNKQLKELFQQGM 399 (1230)
T ss_pred -cchhhhhhHHH---HHHHHHHHHH--HcCCeEEEEEecChHHHHHHHHHHHHHHhcCcccccCCChhhHHHHHHHHhhh
Confidence 00000001111 1234444555 47999999999988877777766 13
Q ss_pred CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE-----ecCCCCC-----HHHHHHHhhcccccC
Q 010367 291 PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ-----ISSHAGS-----RRQEAQRLGRILRAK 360 (512)
Q Consensus 291 ~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~-----~~~~~~s-----~~~~~Q~~GR~~R~g 360 (512)
.+.|.++...+|.-+.+.|+.| .++||+||..++.|+||| |.+||+ +++..++ .-+.+|..|||||+.
T Consensus 400 ~iHhAGm~r~DR~l~E~~F~~G-~i~vL~cTaTLAwGVNLP-A~aViIKGT~~ydsskg~f~dlgilDVlQifGRAGRPq 477 (1230)
T KOG0952|consen 400 GIHHAGMLRSDRQLVEKEFKEG-HIKVLCCTATLAWGVNLP-AYAVIIKGTQVYDSSKGSFVDLGILDVLQIFGRAGRPQ 477 (1230)
T ss_pred hhcccccchhhHHHHHHHHhcC-CceEEEecceeeeccCCc-ceEEEecCCcccccccCceeeehHHHHHHHHhccCCCC
Confidence 4578999999999999999998 999999999999999999 666665 3332222 235699999999988
Q ss_pred CCccccccCCCCceeEEEEEEEeCCcHhhHHH
Q 010367 361 GKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
-.+ .+..+-+-+.|..+.+.+
T Consensus 478 Fd~-----------~G~giIiTt~dkl~~Y~s 498 (1230)
T KOG0952|consen 478 FDS-----------SGEGIIITTRDKLDHYES 498 (1230)
T ss_pred CCC-----------CceEEEEecccHHHHHHH
Confidence 432 344444555555555443
No 86
>COG1205 Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [General function prediction only]
Probab=99.94 E-value=1.1e-24 Score=239.56 Aligned_cols=332 Identities=16% Similarity=0.178 Sum_probs=237.6
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCC--C
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD--D 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~--~ 97 (512)
.|++||.+|++.+.++. +.+++.+||||||.+++.+|... ..++|+|-|+++|+..+.+.|.+|..-.+ .
T Consensus 70 ~lY~HQ~~A~~~~~~G~---~vvVtTgTgSGKTe~FllPIld~~l~~~~a~AL~lYPtnALa~DQ~~rl~~~~~~~~~~v 146 (851)
T COG1205 70 RLYSHQVDALRLIREGR---NVVVTTGTGSGKTESFLLPILDHLLRDPSARALLLYPTNALANDQAERLRELISDLPGKV 146 (851)
T ss_pred cccHHHHHHHHHHHCCC---CEEEECCCCCchhHHHHHHHHHHHhhCcCccEEEEechhhhHhhHHHHHHHHHHhCCCcc
Confidence 49999999999887764 99999999999999998888542 24789999999999999999999875444 5
Q ss_pred cEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-------HHHHH
Q 010367 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------MFRKV 165 (512)
Q Consensus 98 ~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-------~~~~~ 165 (512)
.+..|+|+.+.. ....++|++|||+||....-|.++.. ...+ .++.+||+||+|.+..- .++++
T Consensus 147 ~~~~y~Gdt~~~~r~~~~~~pp~IllTNpdMLh~~llr~~~~~--~~~~--~~Lk~lVvDElHtYrGv~GS~vA~llRRL 222 (851)
T COG1205 147 TFGRYTGDTPPEERRAIIRNPPDILLTNPDMLHYLLLRNHDAW--LWLL--RNLKYLVVDELHTYRGVQGSEVALLLRRL 222 (851)
T ss_pred eeeeecCCCChHHHHHHHhCCCCEEEeCHHHHHHHhccCcchH--HHHH--hcCcEEEEecceeccccchhHHHHHHHHH
Confidence 778899985432 35789999999999998555443322 2222 45999999999999842 45555
Q ss_pred HHhcc----cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHH
Q 010367 166 ISLTK----SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKK 241 (512)
Q Consensus 166 l~~~~----~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (512)
...+. ....|+.|||.........++ +|...- .. ..+.|.-........+.|........
T Consensus 223 ~~~~~~~~~~~q~i~~SAT~~np~e~~~~l---~~~~f~-~~---v~~~g~~~~~~~~~~~~p~~~~~~~~--------- 286 (851)
T COG1205 223 LRRLRRYGSPLQIICTSATLANPGEFAEEL---FGRDFE-VP---VDEDGSPRGLRYFVRREPPIRELAES--------- 286 (851)
T ss_pred HHHHhccCCCceEEEEeccccChHHHHHHh---cCCcce-ee---ccCCCCCCCceEEEEeCCcchhhhhh---------
Confidence 55554 457899999997544432222 221111 10 22334444444555554422111110
Q ss_pred HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHH----h---C------CCceeCCCCHHHHHHHHHH
Q 010367 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMK----L---R------KPMIYGATSHVERTKILQA 308 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~----L---~------~~~i~g~~~~~eR~~il~~ 308 (512)
....+......++...- ..+.++|||+.+...++.+... + + +..++|+++..+|.++...
T Consensus 287 ------~r~s~~~~~~~~~~~~~-~~~~~tL~F~~sr~~~e~~~~~~~~~~~~~~~~l~~~v~~~~~~~~~~er~~ie~~ 359 (851)
T COG1205 287 ------IRRSALAELATLAALLV-RNGIQTLVFFRSRKQVELLYLSPRRRLVREGGKLLDAVSTYRAGLHREERRRIEAE 359 (851)
T ss_pred ------cccchHHHHHHHHHHHH-HcCceEEEEEehhhhhhhhhhchhHHHhhcchhhhhheeeccccCCHHHHHHHHHH
Confidence 11123334445554444 5789999999999999888522 1 2 3457899999999999999
Q ss_pred hhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHh
Q 010367 309 FKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (512)
Q Consensus 309 F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (512)
|+.+ ++.++++|.++..|+|+-.++.||....|.-+...+.|+.||+||.++ .+..+.+...+..+
T Consensus 360 ~~~g-~~~~~~st~AlelgidiG~ldavi~~g~P~~s~~~~~Q~~GRaGR~~~-------------~~l~~~v~~~~~~d 425 (851)
T COG1205 360 FKEG-ELLGVIATNALELGIDIGSLDAVIAYGYPGVSVLSFRQRAGRAGRRGQ-------------ESLVLVVLRSDPLD 425 (851)
T ss_pred HhcC-CccEEecchhhhhceeehhhhhHhhcCCCCchHHHHHHhhhhccCCCC-------------CceEEEEeCCCccc
Confidence 9998 999999999999999999999999986664478999999999999883 24455555577777
Q ss_pred hHHHHHHHHHHH
Q 010367 389 MFYSTKRQQFLI 400 (512)
Q Consensus 389 ~~~~~~r~~~l~ 400 (512)
.+|......++.
T Consensus 426 ~yy~~~p~~~~~ 437 (851)
T COG1205 426 SYYLRHPEELLE 437 (851)
T ss_pred hhhhhCcHhhhh
Confidence 777766665554
No 87
>COG4098 comFA Superfamily II DNA/RNA helicase required for DNA uptake (late competence protein) [DNA replication, recombination, and repair]
Probab=99.94 E-value=2.3e-24 Score=203.74 Aligned_cols=325 Identities=18% Similarity=0.235 Sum_probs=211.1
Q ss_pred CCCCCCCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHH---HHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 20 LKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVG---VSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~---i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
+.=..+|.|+|+.+-+.++.. ......++++-||+|||-+. +..+.+.+.++.+..|+...+-..+..+++- ++
T Consensus 92 L~W~G~Ls~~Q~~as~~l~q~i~~k~~~lv~AV~GaGKTEMif~~i~~al~~G~~vciASPRvDVclEl~~Rlk~a--F~ 169 (441)
T COG4098 92 LQWKGTLSPGQKKASNQLVQYIKQKEDTLVWAVTGAGKTEMIFQGIEQALNQGGRVCIASPRVDVCLELYPRLKQA--FS 169 (441)
T ss_pred eeeccccChhHHHHHHHHHHHHHhcCcEEEEEecCCCchhhhHHHHHHHHhcCCeEEEecCcccchHHHHHHHHHh--hc
Confidence 334579999999999887643 22348999999999999775 4445566889999999999999888888874 33
Q ss_pred CCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC---chHHHHHHHhc--c
Q 010367 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP---AHMFRKVISLT--K 170 (512)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~---~~~~~~~l~~~--~ 170 (512)
...|..++|+..+.+. .+-|+-||.+.+.. ...|+++|+||++..+ ++...-.++.. .
T Consensus 170 ~~~I~~Lyg~S~~~fr-~plvVaTtHQLlrF----------------k~aFD~liIDEVDAFP~~~d~~L~~Av~~ark~ 232 (441)
T COG4098 170 NCDIDLLYGDSDSYFR-APLVVATTHQLLRF----------------KQAFDLLIIDEVDAFPFSDDQSLQYAVKKARKK 232 (441)
T ss_pred cCCeeeEecCCchhcc-ccEEEEehHHHHHH----------------HhhccEEEEeccccccccCCHHHHHHHHHhhcc
Confidence 4578889998887654 34444555554432 2578999999999998 33444333322 2
Q ss_pred cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCc
Q 010367 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (512)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 250 (512)
....|.|||||.+.-... .....++......-....-+.-+ ..+|+.. +..++ +.
T Consensus 233 ~g~~IylTATp~k~l~r~-----~~~g~~~~~klp~RfH~~pLpvP--kf~w~~~----~~k~l--------------~r 287 (441)
T COG4098 233 EGATIYLTATPTKKLERK-----ILKGNLRILKLPARFHGKPLPVP--KFVWIGN----WNKKL--------------QR 287 (441)
T ss_pred cCceEEEecCChHHHHHH-----hhhCCeeEeecchhhcCCCCCCC--ceEEecc----HHHHh--------------hh
Confidence 346899999998532221 00011111111000000001000 1122221 12222 11
Q ss_pred chHH-HHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 251 NKFR-ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 251 ~k~~-~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
+|+. .+...++.+. ..|..++||.++++.++.++..|+ ++.+|+... .|.+.+++|++| ++.+||+|.
T Consensus 288 ~kl~~kl~~~lekq~-~~~~P~liF~p~I~~~eq~a~~lk~~~~~~~i~~Vhs~d~--~R~EkV~~fR~G-~~~lLiTTT 363 (441)
T COG4098 288 NKLPLKLKRWLEKQR-KTGRPVLIFFPEIETMEQVAAALKKKLPKETIASVHSEDQ--HRKEKVEAFRDG-KITLLITTT 363 (441)
T ss_pred ccCCHHHHHHHHHHH-hcCCcEEEEecchHHHHHHHHHHHhhCCccceeeeeccCc--cHHHHHHHHHcC-ceEEEEEee
Confidence 1221 3455566665 678999999999999999999882 245666554 799999999998 999999999
Q ss_pred CCcccccCccccEEEEecCC--CCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHH
Q 010367 323 VGDNSIDIPEANVIIQISSH--AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLI 400 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~--~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~ 400 (512)
++++|+.+|++++.++-+.+ + +....+|..||+||.-.. +.|.-.||..= -+..|..+.+--+.+-
T Consensus 364 ILERGVTfp~vdV~Vlgaeh~vf-TesaLVQIaGRvGRs~~~--------PtGdv~FFH~G---~skaM~~A~keIk~MN 431 (441)
T COG4098 364 ILERGVTFPNVDVFVLGAEHRVF-TESALVQIAGRVGRSLER--------PTGDVLFFHYG---KSKAMKQARKEIKEMN 431 (441)
T ss_pred hhhcccccccceEEEecCCcccc-cHHHHHHHhhhccCCCcC--------CCCcEEEEecc---chHHHHHHHHHHHHHH
Confidence 99999999999998876444 5 788999999999998843 24444444322 2344544444444444
Q ss_pred hcCC
Q 010367 401 DQGY 404 (512)
Q Consensus 401 ~~g~ 404 (512)
..|+
T Consensus 432 ~lg~ 435 (441)
T COG4098 432 KLGF 435 (441)
T ss_pred HHhh
Confidence 4443
No 88
>KOG0346 consensus RNA helicase [RNA processing and modification]
Probab=99.93 E-value=2.6e-25 Score=215.95 Aligned_cols=307 Identities=15% Similarity=0.146 Sum_probs=210.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
++.-.|..||+-++++. +.+.-+.||+|||.+++.++... +-..+|+|||++|+.|.+..+.+..
T Consensus 41 kpTlIQs~aIplaLEgK---DvvarArTGSGKT~AYliPllqkll~~k~t~~~e~~~sa~iLvPTkEL~qQvy~viekL~ 117 (569)
T KOG0346|consen 41 KPTLIQSSAIPLALEGK---DVVARARTGSGKTAAYLIPLLQKLLAEKKTNDGEQGPSAVILVPTKELAQQVYKVIEKLV 117 (569)
T ss_pred CcchhhhcccchhhcCc---ceeeeeccCCCchHHHHHHHHHHHHHhhhcccccccceeEEEechHHHHHHHHHHHHHHH
Confidence 46668999999889886 88999999999999988777432 2368999999999999999988754
Q ss_pred CCCCC--cEEEEcCCc-----cccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----
Q 010367 93 TIQDD--QICRFTSDS-----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM---- 161 (512)
Q Consensus 93 ~~~~~--~v~~~~~~~-----~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~---- 161 (512)
..-+. ++.-+.++. ...+.+.++|+|+||..+..... ...+.. .....++|+|||+.+.+-.
T Consensus 118 ~~c~k~lr~~nl~s~~sdsv~~~~L~d~pdIvV~TP~~ll~~~~-----~~~~~~--~~~l~~LVvDEADLllsfGYeed 190 (569)
T KOG0346|consen 118 EYCSKDLRAINLASSMSDSVNSVALMDLPDIVVATPAKLLRHLA-----AGVLEY--LDSLSFLVVDEADLLLSFGYEED 190 (569)
T ss_pred HHHHHhhhhhhhhcccchHHHHHHHccCCCeEEeChHHHHHHHh-----hccchh--hhheeeEEechhhhhhhcccHHH
Confidence 22111 111122111 12245789999999998765422 111111 2567899999999998654
Q ss_pred HHHHHHhcccc-eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH
Q 010367 162 FRKVISLTKSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (512)
Q Consensus 162 ~~~~l~~~~~~-~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (512)
+.++...++.. +.++||||.......... ..+.+|.+....-.++...+.+ ..+.+.|.
T Consensus 191 lk~l~~~LPr~~Q~~LmSATl~dDv~~LKk-L~l~nPviLkl~e~el~~~dqL---~Qy~v~cs---------------- 250 (569)
T KOG0346|consen 191 LKKLRSHLPRIYQCFLMSATLSDDVQALKK-LFLHNPVILKLTEGELPNPDQL---TQYQVKCS---------------- 250 (569)
T ss_pred HHHHHHhCCchhhheeehhhhhhHHHHHHH-HhccCCeEEEeccccCCCcccc---eEEEEEec----------------
Confidence 45555555543 569999999632222222 2345787766554444322222 22333343
Q ss_pred HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---CC--CceeCCCCHHHHHHHHHHhhCCCCc
Q 010367 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---RK--PMIYGATSHVERTKILQAFKCSRDL 315 (512)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~~--~~i~g~~~~~eR~~il~~F~~~~~~ 315 (512)
..+|+..+-.|++..- - ..|.|||+|++..+..+--.| ++ .++.|.+|..-|.-++++|+.| -+
T Consensus 251 --------e~DKflllyallKL~L-I-~gKsliFVNtIdr~YrLkLfLeqFGiksciLNseLP~NSR~Hii~QFNkG-~Y 319 (569)
T KOG0346|consen 251 --------EEDKFLLLYALLKLRL-I-RGKSLIFVNTIDRCYRLKLFLEQFGIKSCILNSELPANSRCHIIEQFNKG-LY 319 (569)
T ss_pred --------cchhHHHHHHHHHHHH-h-cCceEEEEechhhhHHHHHHHHHhCcHhhhhcccccccchhhHHHHhhCc-ce
Confidence 2233334444443221 2 348999999999876655444 54 4799999999999999999998 99
Q ss_pred cEEEEeCC-----------------------------------CcccccCccccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 316 NTIFLSKV-----------------------------------GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 316 ~vlv~t~~-----------------------------------~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
+++|+|+. ..+|||+.++++|+++|.|. +...|+||+||++|.+
T Consensus 320 divIAtD~s~~~~~~eee~kgk~~e~~~kndkkskkK~D~E~GVsRGIDF~~V~~VlNFD~P~-t~~sYIHRvGRTaRg~ 398 (569)
T KOG0346|consen 320 DIVIATDDSADGDKLEEEVKGKSDEKNPKNDKKSKKKLDKESGVSRGIDFHHVSNVLNFDFPE-TVTSYIHRVGRTARGN 398 (569)
T ss_pred eEEEEccCccchhhhhccccccccccCCCCccccccccCchhchhccccchheeeeeecCCCC-chHHHHHhccccccCC
Confidence 99999981 35799999999999999987 9999999999999987
Q ss_pred CCccccccCCCCceeEEEEEEEeCCc
Q 010367 361 GKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 361 ~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
. .+...++|++..
T Consensus 399 n-------------~GtalSfv~P~e 411 (569)
T KOG0346|consen 399 N-------------KGTALSFVSPKE 411 (569)
T ss_pred C-------------CCceEEEecchH
Confidence 4 244556776544
No 89
>TIGR03714 secA2 accessory Sec system translocase SecA2. Members of this protein family are homologous to SecA and part of the accessory Sec system. This system, including both five core proteins for export and a variable number of proteins for glycosylation, operates in certain Gram-positive pathogens for the maturation and delivery of serine-rich glycoproteins such as the cell surface glycoprotein GspB in Streptococcus gordonii.
Probab=99.93 E-value=6e-25 Score=234.60 Aligned_cols=322 Identities=17% Similarity=0.172 Sum_probs=190.3
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
..+||||.+++..+..+. +.|+.++||+|||++++.++.. .++.++||+|+..|+.||.+.+..+...-...+.
T Consensus 67 lglrpydVQlig~l~l~~---G~Iaem~TGeGKTLta~Lpa~l~aL~g~~V~VVTpn~yLA~Rdae~m~~l~~~LGLsv~ 143 (762)
T TIGR03714 67 LGMFPYDVQVLGAIVLHQ---GNIAEMKTGEGKTLTATMPLYLNALTGKGAMLVTTNDYLAKRDAEEMGPVYEWLGLTVS 143 (762)
T ss_pred cCCCccHHHHHHHHHhcC---CceeEecCCcchHHHHHHHHHHHhhcCCceEEeCCCHHHHHHHHHHHHHHHhhcCCcEE
Confidence 568999999999887665 5799999999999998877643 2568999999999999999888665433333455
Q ss_pred EEcCC-----cc---ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------------
Q 010367 101 RFTSD-----SK---ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------------ 160 (512)
Q Consensus 101 ~~~~~-----~~---~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------------ 160 (512)
...++ .. .+....++|+++|++.|....-|.+.... ...+..+.+.++|+||||.+.-+
T Consensus 144 ~~~~~s~~~~~~~~~rr~~y~~dIvygTp~~LgfDyLrD~l~~~-~~~~~~r~l~~~IVDEaDsILiDeartpliisg~~ 222 (762)
T TIGR03714 144 LGVVDDPDEEYDANEKRKIYNSDIVYTTNSALGFDYLIDNLASN-KEGKFLRPFNYVIVDEVDSVLLDSAQTPLVISGAP 222 (762)
T ss_pred EEECCCCccccCHHHHHHhCCCCEEEECchhhhhhHHHHHhhcc-hhhcccccCcEEEEecHhhHhhccCcCCeeeeCCC
Confidence 54443 11 11125689999999998543111100000 01111256789999999998411
Q ss_pred -----HHH---HHHHhccc--ce-------EEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHh---C---------
Q 010367 161 -----MFR---KVISLTKS--HC-------KLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVK---G--------- 210 (512)
Q Consensus 161 -----~~~---~~l~~~~~--~~-------~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~---~--------- 210 (512)
.|. .++..+.. ++ .+.||-.- ...+..+++ +.+|...|.++.. .
T Consensus 223 ~~~~~~y~~~~~~v~~l~~~~dy~~d~~~~~v~lt~~G------~~~~e~~~~~~~l~~~~~~~~~~~i~~al~A~~~~~ 296 (762)
T TIGR03714 223 RVQSNLYHIADTFVRTLKEDVDYIFKKDKKEVWLTDKG------IEKAEQYFKIDNLYSEEYFELVRHINLALRAHYLFK 296 (762)
T ss_pred ccchHHHHHHHHHHHhcCCCCCeEEEcCCCeeeecHhH------HHHHHHHcCCCccCChhhHHHHHHHHHHHHHHHHHh
Confidence 121 22333322 11 23333211 011111111 1122221111110 0
Q ss_pred ---CCccc-ceeEEEEc----CCC--------------------------------HHHHHHHHHhh------chHHHH-
Q 010367 211 ---GFIAN-VQCAEVWC----PMT--------------------------------KEFFSEYLKKE------NSKKKQ- 243 (512)
Q Consensus 211 ---~~l~~-~~~~~~~~----~~~--------------------------------~~~~~~~l~~~------~~~~~~- 243 (512)
.|+.. -.+..+-. .|. ..+++.|-+-. ......
T Consensus 297 ~d~dYiV~~~~v~ivD~~TGr~~~gr~~~~GLhQaieaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~~~~~Ef 376 (762)
T TIGR03714 297 RNKDYVVTNGEVVLLDRITGRLLEGTKLQSGIHQAIEAKEHVELSKETRAMASITYQNLFKMFNKLSGMTGTGKVAEKEF 376 (762)
T ss_pred cCCceEEECCEEEEEECCCCcCCCCCCcchHHHHHHHhhcCCCCCCCceeeeeeeHHHHHhhCchhcccCCCChhHHHHH
Confidence 01100 00000000 000 11122111000 000000
Q ss_pred ------------------------HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCcee
Q 010367 244 ------------------------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIY 294 (512)
Q Consensus 244 ------------------------~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~ 294 (512)
.++.....|+.++...+.... ..+.++||||+++..++.++..| + ..++|
T Consensus 377 ~~iY~l~v~~IPt~kp~~r~d~~d~i~~~~~~K~~ai~~~i~~~~-~~~~pvLIft~s~~~se~ls~~L~~~gi~~~~L~ 455 (762)
T TIGR03714 377 IETYSLSVVKIPTNKPIIRIDYPDKIYATLPEKLMATLEDVKEYH-ETGQPVLLITGSVEMSEIYSELLLREGIPHNLLN 455 (762)
T ss_pred HHHhCCCEEEcCCCCCeeeeeCCCeEEECHHHHHHHHHHHHHHHh-hCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEec
Confidence 011112347777666665433 46889999999999999999998 3 34699
Q ss_pred CCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCc---------cccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 295 GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP---------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 295 g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp---------~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|++.+.+|..+...|+.+ .|+|+|+++++|+|+| ++++|+.++.+ |.+.+.||.||+||.|.
T Consensus 456 a~~~~~E~~ii~~ag~~g---~VlIATdmAgRGtDI~l~~~v~~~GGL~vIit~~~p--s~rid~qr~GRtGRqG~ 526 (762)
T TIGR03714 456 AQNAAKEAQIIAEAGQKG---AVTVATSMAGRGTDIKLGKGVAELGGLAVIGTERME--NSRVDLQLRGRSGRQGD 526 (762)
T ss_pred CCChHHHHHHHHHcCCCC---eEEEEccccccccCCCCCccccccCCeEEEEecCCC--CcHHHHHhhhcccCCCC
Confidence 999998887777766665 7999999999999999 88999998665 55666999999999885
No 90
>PRK05580 primosome assembly protein PriA; Validated
Probab=99.93 E-value=5.3e-24 Score=231.50 Aligned_cols=295 Identities=18% Similarity=0.167 Sum_probs=180.4
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
....|+++|.++++.+.........++.++||+|||.+++.++.. .++++||++|+.+|+.|+.+.|+++++. .
T Consensus 141 ~~~~Lt~~Q~~ai~~i~~~~~~~~~Ll~~~TGSGKT~v~l~~i~~~l~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~---~ 217 (679)
T PRK05580 141 EPPTLNPEQAAAVEAIRAAAGFSPFLLDGVTGSGKTEVYLQAIAEVLAQGKQALVLVPEIALTPQMLARFRARFGA---P 217 (679)
T ss_pred CCCCCCHHHHHHHHHHHhccCCCcEEEECCCCChHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---C
Confidence 456899999999999987412247999999999999999877643 3678999999999999999999997653 5
Q ss_pred EEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HH--
Q 010367 99 ICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF-- 162 (512)
Q Consensus 99 v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~-- 162 (512)
+.+++++.... ..+..+|+|+|++.+.. . -.++++||+||+|...-. .|
T Consensus 218 v~~~~s~~s~~~r~~~~~~~~~g~~~IVVgTrsal~~-------------p--~~~l~liVvDEeh~~s~~~~~~p~y~~ 282 (679)
T PRK05580 218 VAVLHSGLSDGERLDEWRKAKRGEAKVVIGARSALFL-------------P--FKNLGLIIVDEEHDSSYKQQEGPRYHA 282 (679)
T ss_pred EEEEECCCCHHHHHHHHHHHHcCCCCEEEeccHHhcc-------------c--ccCCCEEEEECCCccccccCcCCCCcH
Confidence 78888764321 13568999999975531 1 257899999999987532 11
Q ss_pred HHH---HHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhch
Q 010367 163 RKV---ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (512)
Q Consensus 163 ~~~---l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (512)
+.+ .........+++||||..+.-. ...-|...+ .....-.....+..+.. +++..+. . ...
T Consensus 283 r~va~~ra~~~~~~~il~SATps~~s~~----~~~~g~~~~-~~l~~r~~~~~~p~v~~----id~~~~~-~----~~~- 347 (679)
T PRK05580 283 RDLAVVRAKLENIPVVLGSATPSLESLA----NAQQGRYRL-LRLTKRAGGARLPEVEI----IDMRELL-R----GEN- 347 (679)
T ss_pred HHHHHHHhhccCCCEEEEcCCCCHHHHH----HHhccceeE-EEeccccccCCCCeEEE----Eechhhh-h----hcc-
Confidence 222 1223345688999999632111 001111100 00000000001111111 1111100 0 000
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCH-----------------------------------------
Q 010367 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL----------------------------------------- 278 (512)
Q Consensus 240 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~----------------------------------------- 278 (512)
....++ .++..+-+.+ ..|.++|||++.+
T Consensus 348 -----~~~ls~---~l~~~i~~~l--~~g~qvll~~nrrGy~~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~ 417 (679)
T PRK05580 348 -----GSFLSP---PLLEAIKQRL--ERGEQVLLFLNRRGYAPFLLCRDCGWVAECPHCDASLTLHRFQRRLRCHHCGYQ 417 (679)
T ss_pred -----cCCCCH---HHHHHHHHHH--HcCCeEEEEEcCCCCCCceEhhhCcCccCCCCCCCceeEECCCCeEECCCCcCC
Confidence 000000 1111111111 2344555554421
Q ss_pred -------------------HHHHHHHHHh-------CCCceeCCCC--HHHHHHHHHHhhCCCCccEEEEeCCCcccccC
Q 010367 279 -------------------FALTEYAMKL-------RKPMIYGATS--HVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (512)
Q Consensus 279 -------------------~~~~~l~~~L-------~~~~i~g~~~--~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDl 330 (512)
.-.+.+++.| ++..+|+++. ..++++++++|.++ +++|||+|++++.|+|+
T Consensus 418 ~~~~~~Cp~Cg~~~l~~~g~G~e~~~e~l~~~fp~~~v~~~~~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~iakG~d~ 496 (679)
T PRK05580 418 EPIPKACPECGSTDLVPVGPGTERLEEELAELFPEARILRIDRDTTRRKGALEQLLAQFARG-EADILIGTQMLAKGHDF 496 (679)
T ss_pred CCCCCCCCCCcCCeeEEeeccHHHHHHHHHHhCCCCcEEEEeccccccchhHHHHHHHHhcC-CCCEEEEChhhccCCCC
Confidence 1233333333 2345788886 46789999999997 99999999999999999
Q ss_pred ccccEEEEecCCC--CC---------HHHHHHHhhcccccC
Q 010367 331 PEANVIIQISSHA--GS---------RRQEAQRLGRILRAK 360 (512)
Q Consensus 331 p~~~~vI~~~~~~--~s---------~~~~~Q~~GR~~R~g 360 (512)
|++++|++++.+. .. .+.+.|++||+||.+
T Consensus 497 p~v~lV~il~aD~~l~~pdfra~Er~~~~l~q~~GRagR~~ 537 (679)
T PRK05580 497 PNVTLVGVLDADLGLFSPDFRASERTFQLLTQVAGRAGRAE 537 (679)
T ss_pred CCcCEEEEEcCchhccCCccchHHHHHHHHHHHHhhccCCC
Confidence 9999887765431 11 257899999999976
No 91
>COG4889 Predicted helicase [General function prediction only]
Probab=99.92 E-value=1e-24 Score=226.00 Aligned_cols=336 Identities=18% Similarity=0.240 Sum_probs=215.3
Q ss_pred ccCCCCCCCCcHHHHHHHHHHHhCC-CCcceEEEcCCCCcHHHHHHHHHHhc-CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 17 NMELKPHAQPRPYQEKSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 17 ~~~l~~~~~Lr~yQ~~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
.+.++...+|||||+.|+++.+++. -..+|-+.|.||+|||++++-+...+ ..++|++||+..|..|..+++..-..+
T Consensus 153 nl~l~~~kk~R~hQq~Aid~a~~~F~~n~RGkLIMAcGTGKTfTsLkisEala~~~iL~LvPSIsLLsQTlrew~~~~~l 232 (1518)
T COG4889 153 NLPLKKPKKPRPHQQTAIDAAKEGFSDNDRGKLIMACGTGKTFTSLKISEALAAARILFLVPSISLLSQTLREWTAQKEL 232 (1518)
T ss_pred ccccCCCCCCChhHHHHHHHHHhhcccccCCcEEEecCCCccchHHHHHHHHhhhheEeecchHHHHHHHHHHHhhccCc
Confidence 3456777899999999999987653 12478899999999999999988776 479999999999999977776653333
Q ss_pred CCCcEEEEcCCcc-----------------------------ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCC
Q 010367 95 QDDQICRFTSDSK-----------------------------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNRE 145 (512)
Q Consensus 95 ~~~~v~~~~~~~~-----------------------------~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~ 145 (512)
+-....+.+...- ..-..+--|+++||+++-...+ -+......
T Consensus 233 ~~~a~aVcSD~kvsrs~eDik~sdl~~p~sT~~~~il~~~~~~~k~~~~~vvFsTYQSl~~i~e--------AQe~G~~~ 304 (1518)
T COG4889 233 DFRASAVCSDDKVSRSAEDIKASDLPIPVSTDLEDILSEMEHRQKANGLTVVFSTYQSLPRIKE--------AQEAGLDE 304 (1518)
T ss_pred cceeEEEecCccccccccccccccCCCCCcccHHHHHHHHHHhhccCCcEEEEEcccchHHHHH--------HHHcCCCC
Confidence 2222222221100 0012446699999998865421 12222368
Q ss_pred ccEEEEcCCCCCCch--------HHHHHH--HhcccceEEEEcccCCCCcch--------Hh-----hhHhhhCCceeee
Q 010367 146 WGLLLMDEVHVVPAH--------MFRKVI--SLTKSHCKLGLTATLVREDER--------IT-----DLNFLIGPKLYEA 202 (512)
Q Consensus 146 ~~lvIiDEaH~~~~~--------~~~~~l--~~~~~~~~l~LTATp~~~~~~--------~~-----~l~~l~gp~~~~~ 202 (512)
|++||+||||+...- .|.++- ..+++..+|.|||||.--.+. -. +=...+||..++.
T Consensus 305 fDliicDEAHRTtGa~~a~dd~saFt~vHs~~niKa~kRlYmTATPkiy~eS~K~kAkd~s~~l~SMDDe~~fGeef~rl 384 (1518)
T COG4889 305 FDLIICDEAHRTTGATLAGDDKSAFTRVHSDQNIKAAKRLYMTATPKIYSESSKAKAKDHSAELSSMDDELTFGEEFHRL 384 (1518)
T ss_pred ccEEEecchhccccceecccCcccceeecCcchhHHHHhhhcccCchhhchhhhhhhhhccceeeccchhhhhchhhhcc
Confidence 999999999998742 343332 345667889999999632111 00 1135689999999
Q ss_pred cHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhh------------hcCCCe
Q 010367 203 NWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE------------QQRGDK 270 (512)
Q Consensus 203 ~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~------------~~~g~k 270 (512)
+..++++.+.+..+.+....++- +....-+.........-+....-.|+.-|..=+.... ..+-.+
T Consensus 385 ~FgeAv~rdlLTDYKVmvlaVd~--~~i~~~~~~~~~~~~~~L~~dd~~kIvG~wnGlakr~g~~n~~~~~~~d~ap~~R 462 (1518)
T COG4889 385 GFGEAVERDLLTDYKVMVLAVDK--EVIAGVLQSVLSGPSKGLALDDVSKIVGCWNGLAKRNGEDNDLKNIKADTAPMQR 462 (1518)
T ss_pred cHHHHHHhhhhccceEEEEEech--hhhhhhhhhhccCcccccchhhhhhhhhhhhhhhhhccccccccCCcCCchHHHH
Confidence 99999999999988876655541 1111100000000000000000001111111010000 012245
Q ss_pred EEEEecCHHHHHHHHHHh--------------------CCCceeCCCCHHHHHHHHHH---hhCCCCccEEEEeCCCccc
Q 010367 271 IIVFADNLFALTEYAMKL--------------------RKPMIYGATSHVERTKILQA---FKCSRDLNTIFLSKVGDNS 327 (512)
Q Consensus 271 ~iVf~~~~~~~~~l~~~L--------------------~~~~i~g~~~~~eR~~il~~---F~~~~~~~vlv~t~~~~~G 327 (512)
+|-||.++++.+.+++.+ .+..++|.|...+|.+.+.. |..+ +++||--..++++|
T Consensus 463 AIaF~k~I~tSK~i~~sFe~Vve~Y~~Elk~d~~nL~iSi~HvDGtmNal~R~~l~~l~~~~~~n-eckIlSNaRcLSEG 541 (1518)
T COG4889 463 AIAFAKDIKTSKQIAESFETVVEAYDEELKKDFKNLKISIDHVDGTMNALERLDLLELKNTFEPN-ECKILSNARCLSEG 541 (1518)
T ss_pred HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhcCCCceEEeecccccccHHHHHHHHhccCCCCcc-hheeeccchhhhcC
Confidence 677777777666655544 13458899999999665443 3443 77887778999999
Q ss_pred ccCccccEEEEecCCCCCHHHHHHHhhcccccCCCcc
Q 010367 328 IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLE 364 (512)
Q Consensus 328 lDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~ 364 (512)
+|+|.++-||++++. .|-.+.+|++||++|..++++
T Consensus 542 VDVPaLDsViFf~pr-~smVDIVQaVGRVMRKa~gK~ 577 (1518)
T COG4889 542 VDVPALDSVIFFDPR-SSMVDIVQAVGRVMRKAKGKK 577 (1518)
T ss_pred CCccccceEEEecCc-hhHHHHHHHHHHHHHhCcCCc
Confidence 999999999999664 488899999999999998766
No 92
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=99.92 E-value=1.2e-23 Score=220.93 Aligned_cols=268 Identities=18% Similarity=0.138 Sum_probs=165.3
Q ss_pred EEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccc---------ccCCC
Q 010367 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRGNA 114 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~~~ 114 (512)
+|.+|||+|||.+++.++.. .++++||++|+.+|+.|+.+.|++.++. .+.+++++.... ..+..
T Consensus 1 LL~g~TGsGKT~v~l~~i~~~l~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~---~v~vlhs~~~~~er~~~~~~~~~g~~ 77 (505)
T TIGR00595 1 LLFGVTGSGKTEVYLQAIEKVLALGKSVLVLVPEIALTPQMIQRFKYRFGS---QVAVLHSGLSDSEKLQAWRKVKNGEI 77 (505)
T ss_pred CccCCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhCC---cEEEEECCCCHHHHHHHHHHHHcCCC
Confidence 47899999999998877643 3678999999999999999999987653 577888764321 13568
Q ss_pred eEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HH-----HHHHHhcccceEEEEcccCCCC
Q 010367 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MF-----RKVISLTKSHCKLGLTATLVRE 184 (512)
Q Consensus 115 ~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~-----~~~l~~~~~~~~l~LTATp~~~ 184 (512)
.|+|+|++.+.. . -.++++|||||+|...-. .| ...........+|++||||..+
T Consensus 78 ~IVVGTrsalf~-------------p--~~~l~lIIVDEeh~~sykq~~~p~y~ar~~a~~ra~~~~~~vil~SATPsle 142 (505)
T TIGR00595 78 LVVIGTRSALFL-------------P--FKNLGLIIVDEEHDSSYKQEEGPRYHARDVAVYRAKKFNCPVVLGSATPSLE 142 (505)
T ss_pred CEEECChHHHcC-------------c--ccCCCEEEEECCCccccccccCCCCcHHHHHHHHHHhcCCCEEEEeCCCCHH
Confidence 899999986631 1 257899999999997632 12 1223333455789999999732
Q ss_pred cchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhh
Q 010367 185 DERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE 264 (512)
Q Consensus 185 ~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~ 264 (512)
.-. ...-|... .....+-.....+..+.+. ++..+... ...++ .++..+.+..
T Consensus 143 s~~----~~~~g~~~-~~~l~~r~~~~~~p~v~vi----d~~~~~~~--------------~~ls~---~l~~~i~~~l- 195 (505)
T TIGR00595 143 SYH----NAKQKAYR-LLVLTRRVSGRKPPEVKLI----DMRKEPRQ--------------SFLSP---ELITAIEQTL- 195 (505)
T ss_pred HHH----HHhcCCeE-EeechhhhcCCCCCeEEEE----eccccccc--------------CCccH---HHHHHHHHHH-
Confidence 111 11112111 1111111111112222221 11110000 00000 1222222222
Q ss_pred hcCCCeEEEEecCHHH------------------------------------------------------------HHHH
Q 010367 265 QQRGDKIIVFADNLFA------------------------------------------------------------LTEY 284 (512)
Q Consensus 265 ~~~g~k~iVf~~~~~~------------------------------------------------------------~~~l 284 (512)
..|.++|||+|.+.. .+.+
T Consensus 196 -~~g~qvLvflnrrGya~~~~C~~Cg~~~~C~~C~~~l~~h~~~~~l~Ch~Cg~~~~~~~~Cp~C~s~~l~~~g~Gte~~ 274 (505)
T TIGR00595 196 -AAGEQSILFLNRRGYSKNLLCRSCGYILCCPNCDVSLTYHKKEGKLRCHYCGYQEPIPKTCPQCGSEDLVYKGYGTEQV 274 (505)
T ss_pred -HcCCcEEEEEeCCcCCCeeEhhhCcCccCCCCCCCceEEecCCCeEEcCCCcCcCCCCCCCCCCCCCeeEeecccHHHH
Confidence 346677777443311 2333
Q ss_pred HHHh-------CCCceeCCCCHHHH--HHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCC--C---------
Q 010367 285 AMKL-------RKPMIYGATSHVER--TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHA--G--------- 344 (512)
Q Consensus 285 ~~~L-------~~~~i~g~~~~~eR--~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~--~--------- 344 (512)
++.| ++..+|++++..++ .++++.|.++ +.+|||+|++++.|+|+|++++|++++.+. .
T Consensus 275 ~e~l~~~fp~~~v~~~d~d~~~~~~~~~~~l~~f~~g-~~~ILVgT~~i~kG~d~~~v~lV~vl~aD~~l~~pd~ra~E~ 353 (505)
T TIGR00595 275 EEELAKLFPGARIARIDSDTTSRKGAHEALLNQFANG-KADILIGTQMIAKGHHFPNVTLVGVLDADSGLHSPDFRAAER 353 (505)
T ss_pred HHHHHhhCCCCcEEEEecccccCccHHHHHHHHHhcC-CCCEEEeCcccccCCCCCcccEEEEEcCcccccCcccchHHH
Confidence 3333 23468999876655 8899999997 999999999999999999999887654431 1
Q ss_pred CHHHHHHHhhcccccCC
Q 010367 345 SRRQEAQRLGRILRAKG 361 (512)
Q Consensus 345 s~~~~~Q~~GR~~R~g~ 361 (512)
..+.+.|+.||+||.+.
T Consensus 354 ~~~ll~q~~GRagR~~~ 370 (505)
T TIGR00595 354 GFQLLTQVAGRAGRAED 370 (505)
T ss_pred HHHHHHHHHhccCCCCC
Confidence 13678999999999773
No 93
>KOG0352 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=1.5e-23 Score=202.90 Aligned_cols=313 Identities=16% Similarity=0.148 Sum_probs=207.1
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE-EcCC
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR-FTSD 105 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~-~~~~ 105 (512)
.|-|++|+..+...+. +..++||||+||++++..++...++-++|+.|..+|+....+.+.+. .++...... ++..
T Consensus 22 s~LQE~A~~c~VK~k~--DVyVsMPTGaGKSLCyQLPaL~~~gITIV~SPLiALIkDQiDHL~~L-KVp~~SLNSKlSt~ 98 (641)
T KOG0352|consen 22 SRLQEQAINCIVKRKC--DVYVSMPTGAGKSLCYQLPALVHGGITIVISPLIALIKDQIDHLKRL-KVPCESLNSKLSTV 98 (641)
T ss_pred ChHHHHHHHHHHhccC--cEEEeccCCCchhhhhhchHHHhCCeEEEehHHHHHHHHHHHHHHhc-CCchhHhcchhhHH
Confidence 3679999999988763 89999999999999999999888889999999999999988888875 333222211 1111
Q ss_pred cccc-------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhc-CCccEEEEcCCCCCCc------hH---HHHHHHh
Q 010367 106 SKER-------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------HM---FRKVISL 168 (512)
Q Consensus 106 ~~~~-------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~lvIiDEaH~~~~------~~---~~~~l~~ 168 (512)
.++. ......++..||++..... .+..++.|-+ ....++++||||+... +. ...+...
T Consensus 99 ER~ri~~DL~~ekp~~K~LYITPE~AAt~~-----FQ~lLn~L~~r~~L~Y~vVDEAHCVSQWGHDFRPDYL~LG~LRS~ 173 (641)
T KOG0352|consen 99 ERSRIMGDLAKEKPTIKMLYITPEGAATDG-----FQKLLNGLANRDVLRYIVVDEAHCVSQWGHDFRPDYLTLGSLRSV 173 (641)
T ss_pred HHHHHHHHHHhcCCceeEEEEchhhhhhhh-----HHHHHHHHhhhceeeeEEechhhhHhhhccccCcchhhhhhHHhh
Confidence 1111 1345678999999887652 4556666644 4568999999999873 22 2334444
Q ss_pred cccceEEEEcccCCCCcchHhhhH---hhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHH--
Q 010367 169 TKSHCKLGLTATLVREDERITDLN---FLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQ-- 243 (512)
Q Consensus 169 ~~~~~~l~LTATp~~~~~~~~~l~---~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-- 243 (512)
+.....+.||||..+.... ++. .+-.|. -+..-++....-||.-..+......-.
T Consensus 174 ~~~vpwvALTATA~~~VqE--Di~~qL~L~~PV------------------AiFkTP~FR~NLFYD~~~K~~I~D~~~~L 233 (641)
T KOG0352|consen 174 CPGVPWVALTATANAKVQE--DIAFQLKLRNPV------------------AIFKTPTFRDNLFYDNHMKSFITDCLTVL 233 (641)
T ss_pred CCCCceEEeecccChhHHH--HHHHHHhhcCcH------------------HhccCcchhhhhhHHHHHHHHhhhHhHhH
Confidence 5555789999998754322 221 111221 111111111112222111000000000
Q ss_pred ----HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCC
Q 010367 244 ----ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRD 314 (512)
Q Consensus 244 ----~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~ 314 (512)
.-...++.++. ..........||||.++..++.++-.|. ...+|.++...||.++.+.|.++ +
T Consensus 234 aDF~~~~LG~~~~~~-------~~~K~~~GCGIVYCRTR~~cEq~AI~l~~~Gi~A~AYHAGLK~~ERTeVQe~WM~~-~ 305 (641)
T KOG0352|consen 234 ADFSSSNLGKHEKAS-------QNKKTFTGCGIVYCRTRNECEQVAIMLEIAGIPAMAYHAGLKKKERTEVQEKWMNN-E 305 (641)
T ss_pred HHHHHHhcCChhhhh-------cCCCCcCcceEEEeccHHHHHHHHHHhhhcCcchHHHhcccccchhHHHHHHHhcC-C
Confidence 00011111111 0000112467999999999999999983 34589999999999999999997 9
Q ss_pred ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 315 ~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
+.||++|...|+|+|-|++..||+++.+. |..-|.|..||+||.|. +.+.-.+|+--+.+.
T Consensus 306 ~PvI~AT~SFGMGVDKp~VRFViHW~~~q-n~AgYYQESGRAGRDGk----------~SyCRLYYsR~D~~~ 366 (641)
T KOG0352|consen 306 IPVIAATVSFGMGVDKPDVRFVIHWSPSQ-NLAGYYQESGRAGRDGK----------RSYCRLYYSRQDKNA 366 (641)
T ss_pred CCEEEEEeccccccCCcceeEEEecCchh-hhHHHHHhccccccCCC----------ccceeeeecccchHH
Confidence 99999999999999999999999997765 99999999999999996 444455555444444
No 94
>KOG0337 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.91 E-value=1.9e-24 Score=208.99 Aligned_cols=305 Identities=19% Similarity=0.212 Sum_probs=224.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-hc------CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
.++.|.|++.++-+++.. +.+-.+-||+|||.+.+.++. ++ +-+.|++.|+++|+.|..+-++.+.....
T Consensus 42 ~~ptpiqRKTipliLe~~---dvv~martgsgktaaf~ipm~e~Lk~~s~~g~RalilsptreLa~qtlkvvkdlgrgt~ 118 (529)
T KOG0337|consen 42 NTPTPIQRKTIPLILEGR---DVVGMARTGSGKTAAFLIPMIEKLKSHSQTGLRALILSPTRELALQTLKVVKDLGRGTK 118 (529)
T ss_pred CCCCchhcccccceeecc---ccceeeecCCcchhhHHHHHHHHHhhccccccceeeccCcHHHHHHHHHHHHHhccccc
Confidence 478999999999988875 778889999999999876663 33 24899999999999999888877654444
Q ss_pred CcEE-EEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH----HHHH
Q 010367 97 DQIC-RFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVIS 167 (512)
Q Consensus 97 ~~v~-~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~----~~l~ 167 (512)
.+.. .+.++..+. +...++|+++|+..+....- ++. +......+||+||++++....|+ +++.
T Consensus 119 lr~s~~~ggD~~eeqf~~l~~npDii~ATpgr~~h~~v------em~--l~l~sveyVVfdEadrlfemgfqeql~e~l~ 190 (529)
T KOG0337|consen 119 LRQSLLVGGDSIEEQFILLNENPDIIIATPGRLLHLGV------EMT--LTLSSVEYVVFDEADRLFEMGFQEQLHEILS 190 (529)
T ss_pred hhhhhhcccchHHHHHHHhccCCCEEEecCceeeeeeh------hee--ccccceeeeeehhhhHHHhhhhHHHHHHHHH
Confidence 4444 444444322 34679999999998876532 111 23356789999999999876454 4555
Q ss_pred hcc-cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeE-EEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 168 LTK-SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCA-EVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~-~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
.++ .+..+.+|||.++ .+.+..+.|...|+.+. .+....++.. +-...
T Consensus 191 rl~~~~QTllfSatlp~-------------------~lv~fakaGl~~p~lVRldvetkise~l-----------k~~f~ 240 (529)
T KOG0337|consen 191 RLPESRQTLLFSATLPR-------------------DLVDFAKAGLVPPVLVRLDVETKISELL-----------KVRFF 240 (529)
T ss_pred hCCCcceEEEEeccCch-------------------hhHHHHHccCCCCceEEeehhhhcchhh-----------hhhee
Confidence 443 4588999999974 22234445555554332 1111111111 11112
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
.....+|..++..++.... ..+.++||+.+..+++.+...| ....++|.+.+..|..-+.+|..+ ...+++.
T Consensus 241 ~~~~a~K~aaLl~il~~~~--~~~~t~vf~~tk~hve~~~~ll~~~g~~~s~iysslD~~aRk~~~~~F~~~-k~~~lvv 317 (529)
T KOG0337|consen 241 RVRKAEKEAALLSILGGRI--KDKQTIVFVATKHHVEYVRGLLRDFGGEGSDIYSSLDQEARKINGRDFRGR-KTSILVV 317 (529)
T ss_pred eeccHHHHHHHHHHHhccc--cccceeEEecccchHHHHHHHHHhcCCCccccccccChHhhhhccccccCC-ccceEEE
Confidence 2334456677777776553 2457999999999999998888 356799999999999999999997 9999999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
|+++.+|+|+|-.+.||.++.|. .+..+++|+||+.|.|. ...+|++|..+.
T Consensus 318 TdvaaRG~diplldnvinyd~p~-~~klFvhRVgr~aragr-------------tg~aYs~V~~~~ 369 (529)
T KOG0337|consen 318 TDVAARGLDIPLLDNVINYDFPP-DDKLFVHRVGRVARAGR-------------TGRAYSLVASTD 369 (529)
T ss_pred ehhhhccCCCccccccccccCCC-CCceEEEEecchhhccc-------------cceEEEEEeccc
Confidence 99999999999999999999887 89999999999999885 477999998654
No 95
>TIGR00963 secA preprotein translocase, SecA subunit. The proteins SecA-F and SecY, not all of which are necessary, comprise the standard prokaryotic protein translocation apparatus. Other, specialized translocation systems also exist but are not as broadly distributed. This model describes SecA, an essential member of the apparatus.
Probab=99.91 E-value=5.6e-24 Score=225.83 Aligned_cols=328 Identities=18% Similarity=0.189 Sum_probs=197.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
.-+|||+.+.+..+.-+. +.|..++||+|||+++..++. ..++.++|++|+..|+.|-.+.+..++..-...++
T Consensus 53 lg~~p~~vQlig~~~l~~---G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~VvTpt~~LA~qdae~~~~l~~~LGLsv~ 129 (745)
T TIGR00963 53 LGMRPFDVQLIGGIALHK---GKIAEMKTGEGKTLTATLPAYLNALTGKGVHVVTVNDYLAQRDAEWMGQVYRFLGLSVG 129 (745)
T ss_pred hCCCccchHHhhhhhhcC---CceeeecCCCccHHHHHHHHHHHHHhCCCEEEEcCCHHHHHHHHHHHHHHhccCCCeEE
Confidence 346666555555544433 348889999999999877662 23678999999999999988888887765556788
Q ss_pred EEcCCcccc---ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc---cceE
Q 010367 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK---SHCK 174 (512)
Q Consensus 101 ~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~---~~~~ 174 (512)
.+.++.... ....++|+++|+..|....-|.+.. ...+.+..+.++++|+||+|++.-+..+..+-.-. ....
T Consensus 130 ~i~g~~~~~~r~~~y~~dIvyGT~~rlgfDyLrd~~~-~~~~~~~~r~l~~aIIDEaDs~LIDeaRtpLiisg~~~~~~~ 208 (745)
T TIGR00963 130 LILSGMSPEERREAYACDITYGTNNELGFDYLRDNMA-HSKEEKVQRPFHFAIIDEVDSILIDEARTPLIISGPAEKSTE 208 (745)
T ss_pred EEeCCCCHHHHHHhcCCCEEEECCCchhhHHHhcccc-cchhhhhccccceeEeecHHHHhHHhhhhHHhhcCCCCCchH
Confidence 887764321 2245799999999774332221110 01122334778999999999998543332221111 1223
Q ss_pred EEEcccCCCC--------------------cchHhhhHhhhC-Cceeee---cHHHHHhC------------CCccc-ce
Q 010367 175 LGLTATLVRE--------------------DERITDLNFLIG-PKLYEA---NWLDLVKG------------GFIAN-VQ 217 (512)
Q Consensus 175 l~LTATp~~~--------------------~~~~~~l~~l~g-p~~~~~---~~~~l~~~------------~~l~~-~~ 217 (512)
+.++|||... +.-...+..+++ +.+|.. .|...+.+ .|+.. -.
T Consensus 209 ly~~a~~i~r~L~~~~dy~~de~~k~v~Lt~~G~~~~e~~~~~~~ly~~~~~~~~~~i~~Al~A~~l~~~d~dYiV~d~~ 288 (745)
T TIGR00963 209 LYLQANRFAKALEKEVHYEVDEKNRAVLLTEKGIKKAEDLLGVDNLYDLENSPLIHYINNALKAKELFEKDVDYIVRDGE 288 (745)
T ss_pred HHHHHHHHHHhhccCCCeEEecCCCceeECHHHHHHHHHHcCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCE
Confidence 4455554321 000111222222 122221 11111111 01110 00
Q ss_pred eEEEEc----CCC--------------------------------HHHHHHHHHhh------chHHHH--HH--------
Q 010367 218 CAEVWC----PMT--------------------------------KEFFSEYLKKE------NSKKKQ--AL-------- 245 (512)
Q Consensus 218 ~~~~~~----~~~--------------------------------~~~~~~~l~~~------~~~~~~--~~-------- 245 (512)
+..+.. .|. ..+++.|-+-. ...... .+
T Consensus 289 V~ivD~~TGR~~~gr~ws~GLhQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~I 368 (745)
T TIGR00963 289 VVIVDEFTGRIMEGRRWSDGLHQAIEAKEGVEIQNENQTLATITYQNFFRLYEKLSGMTGTAKTEEEEFEKIYNLEVVVV 368 (745)
T ss_pred EEEEECCCCcCCCCCccchHHHHHHHHhcCCCcCCCceeeeeeeHHHHHhhCchhhccCCCcHHHHHHHHHHhCCCEEEe
Confidence 000000 010 11111111000 000000 00
Q ss_pred ---------------hhcCcchHHHHHHHH-HHhhhcCCCeEEEEecCHHHHHHHHHHhC---C--CceeCCCCHHHHHH
Q 010367 246 ---------------YVMNPNKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR---K--PMIYGATSHVERTK 304 (512)
Q Consensus 246 ---------------~~~~~~k~~~l~~ll-~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---~--~~i~g~~~~~eR~~ 304 (512)
+.....|+.++...+ +.+ ..|.++||||+++..++.++..|. + .++||+ +.+|+.
T Consensus 369 Ptnkp~~R~d~~d~i~~t~~~k~~ai~~~i~~~~--~~grpvLV~t~si~~se~ls~~L~~~gi~~~~Lna~--q~~rEa 444 (745)
T TIGR00963 369 PTNRPVIRKDLSDLVYKTEEEKWKAVVDEIKERH--AKGQPVLVGTTSVEKSELLSNLLKERGIPHNVLNAK--NHEREA 444 (745)
T ss_pred CCCCCeeeeeCCCeEEcCHHHHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHcCCCeEEeeCC--hHHHHH
Confidence 111234666655544 444 579999999999999999999993 3 357887 779999
Q ss_pred HHHHhhCCCCccEEEEeCCCcccccCcc-------ccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPE-------ANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 305 il~~F~~~~~~~vlv~t~~~~~GlDlp~-------~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
.+..|..+ ...|+|+|+++++|+|++. ..+||.++.|. |++.+.|+.||+||.|.
T Consensus 445 ~ii~~ag~-~g~VtIATnmAgRGtDI~l~~V~~~GGl~VI~t~~p~-s~ri~~q~~GRtGRqG~ 506 (745)
T TIGR00963 445 EIIAQAGR-KGAVTIATNMAGRGTDIKLEEVKELGGLYVIGTERHE-SRRIDNQLRGRSGRQGD 506 (745)
T ss_pred HHHHhcCC-CceEEEEeccccCCcCCCccchhhcCCcEEEecCCCC-cHHHHHHHhccccCCCC
Confidence 99999886 8999999999999999998 45999998876 99999999999999885
No 96
>KOG0334 consensus RNA helicase [RNA processing and modification]
Probab=99.91 E-value=8.3e-24 Score=225.91 Aligned_cols=306 Identities=17% Similarity=0.179 Sum_probs=212.8
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------CC-CEEEEEcChhhHHHHHHHHHHhhC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KK-SCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~-~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
+++|.|..|++.++.+. ++|.++-||+|||+.++.++.+. .+ -+||+||+++|+.|..+++.+|+.
T Consensus 387 k~~~IQ~qAiP~ImsGr---dvIgvakTgSGKT~af~LPmirhi~dQr~~~~gdGPi~li~aPtrela~QI~r~~~kf~k 463 (997)
T KOG0334|consen 387 KPTPIQAQAIPAIMSGR---DVIGVAKTGSGKTLAFLLPMIRHIKDQRPLEEGDGPIALILAPTRELAMQIHREVRKFLK 463 (997)
T ss_pred CCcchhhhhcchhccCc---ceEEeeccCCccchhhhcchhhhhhcCCChhhCCCceEEEEcCCHHHHHHHHHHHHHHHh
Confidence 78999999999998875 99999999999999997666433 12 389999999999999999998875
Q ss_pred CCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHH
Q 010367 94 IQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRK 164 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~ 164 (512)
.....+....|+... .+...+.|+|+|++......--. +.+ +-. ....-++|+|||+++... ....
T Consensus 464 ~l~ir~v~vygg~~~~~qiaelkRg~eIvV~tpGRmiD~l~~n--~gr-vtn--lrR~t~lv~deaDrmfdmgfePq~~~ 538 (997)
T KOG0334|consen 464 LLGIRVVCVYGGSGISQQIAELKRGAEIVVCTPGRMIDILCAN--SGR-VTN--LRRVTYLVLDEADRMFDMGFEPQITR 538 (997)
T ss_pred hcCceEEEecCCccHHHHHHHHhcCCceEEeccchhhhhHhhc--CCc-ccc--ccccceeeechhhhhheeccCcccch
Confidence 555555444444321 13456999999998554221000 000 001 134458999999999843 3333
Q ss_pred HHHhccc-ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCc-ccceeEEEEcCCCHHHHHHHHHhhchHHH
Q 010367 165 VISLTKS-HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFI-ANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (512)
Q Consensus 165 ~l~~~~~-~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (512)
++..+.. ++.+++|||.++.-..... .-+-.|.-..... .+.+ ..+.....
T Consensus 539 Ii~nlrpdrQtvlfSatfpr~m~~la~-~vl~~Pveiiv~~-----~svV~k~V~q~v~--------------------- 591 (997)
T KOG0334|consen 539 ILQNLRPDRQTVLFSATFPRSMEALAR-KVLKKPVEIIVGG-----RSVVCKEVTQVVR--------------------- 591 (997)
T ss_pred HHhhcchhhhhhhhhhhhhHHHHHHHH-HhhcCCeeEEEcc-----ceeEeccceEEEE---------------------
Confidence 7777754 4678899999864211110 0011121100000 0000 01111111
Q ss_pred HHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccE
Q 010367 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNT 317 (512)
Q Consensus 243 ~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~v 317 (512)
++...+.|+.-+..||.... ...++||||++...++.+.+.|- +..+||+.++.+|..+++.|+++ .+++
T Consensus 592 --V~~~e~eKf~kL~eLl~e~~--e~~~tiiFv~~qe~~d~l~~~L~~ag~~~~slHGgv~q~dR~sti~dfK~~-~~~L 666 (997)
T KOG0334|consen 592 --VCAIENEKFLKLLELLGERY--EDGKTIIFVDKQEKADALLRDLQKAGYNCDSLHGGVDQHDRSSTIEDFKNG-VVNL 666 (997)
T ss_pred --EecCchHHHHHHHHHHHHHh--hcCCEEEEEcCchHHHHHHHHHHhcCcchhhhcCCCchHHHHhHHHHHhcc-CceE
Confidence 11123456667777775543 26699999999999999999983 22499999999999999999997 9999
Q ss_pred EEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeC
Q 010367 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (512)
Q Consensus 318 lv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~ 384 (512)
|++|+++++|+|++++.+||+|+.+. -..+|++|.||++|.|+ . ...|+++++
T Consensus 667 LvaTsvvarGLdv~~l~Lvvnyd~pn-h~edyvhR~gRTgragr----------k---g~AvtFi~p 719 (997)
T KOG0334|consen 667 LVATSVVARGLDVKELILVVNYDFPN-HYEDYVHRVGRTGRAGR----------K---GAAVTFITP 719 (997)
T ss_pred EEehhhhhcccccccceEEEEcccch-hHHHHHHHhcccccCCc----------c---ceeEEEeCh
Confidence 99999999999999999999998876 88889999999999996 2 366777877
No 97
>KOG0351 consensus ATP-dependent DNA helicase [Replication, recombination and repair]
Probab=99.91 E-value=1.1e-23 Score=230.41 Aligned_cols=302 Identities=18% Similarity=0.153 Sum_probs=214.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
...||-|.++|..++.+. ++.+.+|||.||++++..++....+-+|||.|..+|+......+... +++ ...++
T Consensus 263 ~~FR~~Q~eaI~~~l~Gk---d~fvlmpTG~GKSLCYQlPA~l~~gitvVISPL~SLm~DQv~~L~~~-~I~---a~~L~ 335 (941)
T KOG0351|consen 263 KGFRPNQLEAINATLSGK---DCFVLMPTGGGKSLCYQLPALLLGGVTVVISPLISLMQDQVTHLSKK-GIP---ACFLS 335 (941)
T ss_pred ccCChhHHHHHHHHHcCC---ceEEEeecCCceeeEeeccccccCCceEEeccHHHHHHHHHHhhhhc-Ccc---eeecc
Confidence 468999999999877775 99999999999999999999999999999999999999877777443 343 33444
Q ss_pred CCcccc--------c-cC--CCeEEEEchhhhhccCCCchhHHHHHHHHhc-CCccEEEEcCCCCCCc------hHHHH-
Q 010367 104 SDSKER--------F-RG--NAGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA------HMFRK- 164 (512)
Q Consensus 104 ~~~~~~--------~-~~--~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~lvIiDEaH~~~~------~~~~~- 164 (512)
++.... + .+ ...|+..||+++..... ....+..+.. .-..++|+||||+... +.|++
T Consensus 336 s~q~~~~~~~i~q~l~~~~~~ikilYvtPE~v~~~~~----l~~~~~~L~~~~~lal~vIDEAHCVSqWgHdFRp~Yk~l 411 (941)
T KOG0351|consen 336 SIQTAAERLAILQKLANGNPIIKILYVTPEKVVASEG----LLESLADLYARGLLALFVIDEAHCVSQWGHDFRPSYKRL 411 (941)
T ss_pred ccccHHHHHHHHHHHhCCCCeEEEEEeCHHHhhcccc----hhhHHHhccCCCeeEEEEecHHHHhhhhcccccHHHHHH
Confidence 443321 1 23 57899999999987633 1222222211 1257899999999973 34443
Q ss_pred --HHHhcccceEEEEcccCCCCcch--HhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH
Q 010367 165 --VISLTKSHCKLGLTATLVREDER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK 240 (512)
Q Consensus 165 --~l~~~~~~~~l~LTATp~~~~~~--~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~ 240 (512)
+...+....+|+||||-...... +..| .+-.|. +....+..+-...+|........
T Consensus 412 ~~l~~~~~~vP~iALTATAT~~v~~DIi~~L-~l~~~~--------~~~~sfnR~NL~yeV~~k~~~~~----------- 471 (941)
T KOG0351|consen 412 GLLRIRFPGVPFIALTATATERVREDVIRSL-GLRNPE--------LFKSSFNRPNLKYEVSPKTDKDA----------- 471 (941)
T ss_pred HHHHhhCCCCCeEEeehhccHHHHHHHHHHh-CCCCcc--------eecccCCCCCceEEEEeccCccc-----------
Confidence 33445567899999998642211 1111 112222 22233333333334433322100
Q ss_pred HHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCc
Q 010367 241 KKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDL 315 (512)
Q Consensus 241 ~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~ 315 (512)
-+..+..+-.. .++...||+|.++..++.++..| +..++|++++..+|..+...|..+ ++
T Consensus 472 -----------~~~~~~~~~~~---~~~~s~IIYC~sr~~ce~vs~~L~~~~~~a~~YHAGl~~~~R~~Vq~~w~~~-~~ 536 (941)
T KOG0351|consen 472 -----------LLDILEESKLR---HPDQSGIIYCLSRKECEQVSAVLRSLGKSAAFYHAGLPPKERETVQKAWMSD-KI 536 (941)
T ss_pred -----------hHHHHHHhhhc---CCCCCeEEEeCCcchHHHHHHHHHHhchhhHhhhcCCCHHHHHHHHHHHhcC-CC
Confidence 01122222333 34778999999999999999998 356899999999999999999997 89
Q ss_pred cEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEE
Q 010367 316 NTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382 (512)
Q Consensus 316 ~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv 382 (512)
+|+|+|=|.|+|||.|++..||++.-|. |...|.|..||+||.|. ....+.+|.+-
T Consensus 537 ~VivATVAFGMGIdK~DVR~ViH~~lPk-s~E~YYQE~GRAGRDG~----------~s~C~l~y~~~ 592 (941)
T KOG0351|consen 537 RVIVATVAFGMGIDKPDVRFVIHYSLPK-SFEGYYQEAGRAGRDGL----------PSSCVLLYGYA 592 (941)
T ss_pred eEEEEEeeccCCCCCCceeEEEECCCch-hHHHHHHhccccCcCCC----------cceeEEecchh
Confidence 9999999999999999999999996665 99999999999999996 45567777654
No 98
>KOG1016 consensus Predicted DNA helicase, DEAD-box superfamily [General function prediction only]
Probab=99.91 E-value=1.1e-23 Score=215.71 Aligned_cols=375 Identities=19% Similarity=0.302 Sum_probs=239.1
Q ss_pred CCCcHHHHHHHHHHHhC----------CCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
..+.|||.-+++.++.+ .-+-+||++.-||+|||++.+.++.-+ -+.||+|+|-.+ +++|..||
T Consensus 253 ~v~kPHQiGGiRFlYDN~iESl~rykkSsGFGCILAHSMGLGKTlQVisF~diflRhT~AKtVL~ivPiNT-lQNWlsEf 331 (1387)
T KOG1016|consen 253 HVLKPHQIGGIRFLYDNTIESLGRYKKSSGFGCILAHSMGLGKTLQVISFSDIFLRHTKAKTVLVIVPINT-LQNWLSEF 331 (1387)
T ss_pred hhcCccccCcEEEehhhHHHHHhhccccCCcceeeeeccccCceeEEeehhHHHhhcCccceEEEEEehHH-HHHHHHHh
Confidence 46889999888766432 123479999999999999977666322 378999999887 88999999
Q ss_pred HHhhCC-------CCC--cEEEEcCCcccc---------ccCCCeEEEEchhhhhccC--------------CCch----
Q 010367 89 KLWSTI-------QDD--QICRFTSDSKER---------FRGNAGVVVTTYNMVAFGG--------------KRSE---- 132 (512)
Q Consensus 89 ~~~~~~-------~~~--~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~--------------~r~~---- 132 (512)
..|..- -+. .|.++..+.+-- +....+|++.-|+|+.-+. +|..
T Consensus 332 nmWiP~y~sD~~vrpR~F~vf~LnD~~KT~~~Rakvi~~Wv~~GGVlLvGYemfRLL~lk~~~~~grpkkt~kr~~~~~i 411 (1387)
T KOG1016|consen 332 NMWIPKYFSDTGVRPRSFEVFLLNDGVKTFDQRAKVIEQWVQTGGVLLVGYEMFRLLILKTLPKKGRPKKTLKRISSGFI 411 (1387)
T ss_pred hhhcCCCcccCCCccceeEEEEecCchhhHHHHHHHHHHHhccCCEEEehHHHHHHHHHhcccccCCccccccccCCccc
Confidence 999521 011 344444443311 1256779999999876431 1200
Q ss_pred ------hHHHHHH----HHhcCCccEEEEcCCCCCCch--HHHHHHHhcccceEEEEcccCCCCcchHh-hhHhhhCCce
Q 010367 133 ------ESEKIIE----EIRNREWGLLLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERIT-DLNFLIGPKL 199 (512)
Q Consensus 133 ------~~~~~~~----~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~~-~l~~l~gp~~ 199 (512)
....++. .|.....++||+||.|++++- .....+..++.+++|.|||-|.+++..+. -+..++.|..
T Consensus 412 ~~d~eD~~qe~~~li~~AL~~PGPDlVICDEGHrIKN~~A~iS~aLk~IrtrRRiVLTGYPLQNNLlEYwCMVDFVRP~y 491 (1387)
T KOG1016|consen 412 KDDSEDQRQEAYSLIRSALLEPGPDLVICDEGHRIKNITAEISMALKAIRTRRRIVLTGYPLQNNLLEYWCMVDFVRPKY 491 (1387)
T ss_pred CCchhhhHHHHHHHHHHHhcCCCCCeEEecCCceeccchHHHHHHHHHhhhceeEEEeccccccchHHHhhhheeccccc
Confidence 1112222 233467899999999999975 45567788889999999999998765432 1222222221
Q ss_pred eee--cHHHHHhC------------------------------C------------CcccceeEEEEcCCC---HHHHHH
Q 010367 200 YEA--NWLDLVKG------------------------------G------------FIANVQCAEVWCPMT---KEFFSE 232 (512)
Q Consensus 200 ~~~--~~~~l~~~------------------------------~------------~l~~~~~~~~~~~~~---~~~~~~ 232 (512)
... .+..++++ | ++.....+.+.+.++ ...|..
T Consensus 492 LGTR~eF~nmFErPI~NGQCvDStPdDvklmryRtHVLhsLl~GFVQRR~HtvLk~~LP~k~EyViLvr~s~iQR~LY~~ 571 (1387)
T KOG1016|consen 492 LGTRKEFINMFERPIKNGQCVDSTPDDVKLMRYRTHVLHSLLKGFVQRRTHTVLKKILPEKKEYVILVRKSQIQRQLYRN 571 (1387)
T ss_pred cchHHHHHHHhhccccCCccccCChhHHHHHHHHHHHHHHHHHHHHHhcchhhHhhhcccccceEEEEeHHHHHHHHHHH
Confidence 100 00000000 1 111111122222222 222333
Q ss_pred HHHhhchH-------------HHH-----------HHh------------------------------------------
Q 010367 233 YLKKENSK-------------KKQ-----------ALY------------------------------------------ 246 (512)
Q Consensus 233 ~l~~~~~~-------------~~~-----------~~~------------------------------------------ 246 (512)
++ ....+ +.- +++
T Consensus 572 Fm-~d~~r~~~~~~~~~~NPLkAF~vCcKIWNHPDVLY~~l~k~~~a~e~dl~vee~~~ag~~~~~~P~~~~~~~~s~~l 650 (1387)
T KOG1016|consen 572 FM-LDAKREIAANNDAVFNPLKAFSVCCKIWNHPDVLYRLLEKKKRAEEDDLRVEEMKFAGLQQQQSPFNSIPSNPSTPL 650 (1387)
T ss_pred HH-HHHHHhhccccccccChHHHHHHHHHhcCChHHHHHHHHHhhhhhhhhhhHHHHhhhcccccCCCCCCCCCCCCCcc
Confidence 32 00000 000 000
Q ss_pred ------hc--------------------CcchH-HHHHHHHHHhh--------------------hcCCCeEEEEecCHH
Q 010367 247 ------VM--------------------NPNKF-RACEFLIRFHE--------------------QQRGDKIIVFADNLF 279 (512)
Q Consensus 247 ------~~--------------------~~~k~-~~l~~ll~~~~--------------------~~~g~k~iVf~~~~~ 279 (512)
.. +..+. ...-++..... ..-|.|+|||+++..
T Consensus 651 aSs~~k~~n~t~kp~~s~~~p~f~ee~~e~~~y~~w~~el~~nYq~gvLen~pk~V~~~~~~des~~~g~kil~fSq~l~ 730 (1387)
T KOG1016|consen 651 ASSTSKSANKTKKPRGSKKAPKFDEEDEEVEKYSDWTFELFENYQEGVLENGPKIVISLEILDESTQIGEKILIFSQNLT 730 (1387)
T ss_pred cchhhhhhcccCCcccCcCCCCcccccccccchhhHHHHHHhhhhcccccCCCceEEEEeeeccccccCceEEEeecchh
Confidence 00 00011 11112221110 134789999999999
Q ss_pred HHHHHHHHhCC-----------------------CceeCCCCHHHHHHHHHHhhCCCCccE--EEEeCCCcccccCcccc
Q 010367 280 ALTEYAMKLRK-----------------------PMIYGATSHVERTKILQAFKCSRDLNT--IFLSKVGDNSIDIPEAN 334 (512)
Q Consensus 280 ~~~~l~~~L~~-----------------------~~i~g~~~~~eR~~il~~F~~~~~~~v--lv~t~~~~~GlDlp~~~ 334 (512)
.++.+.+.|+. ..++|.++..+|++++++|+..+.+.. +++|+++..||||-.++
T Consensus 731 ~Ld~ieeil~krq~pc~~gdnG~~aqkW~~n~sy~rldG~t~a~~rekLinqfN~e~~lsWlfllstrag~lGinLIsan 810 (1387)
T KOG1016|consen 731 ALDMIEEILKKRQIPCKDGDNGCPAQKWEKNRSYLRLDGTTSAADREKLINQFNSEPGLSWLFLLSTRAGSLGINLISAN 810 (1387)
T ss_pred HHHHHHHHHhcccccCCCCCCCCchhhhhhccceecccCCcccchHHHHHHhccCCCCceeeeeehhccccccceeeccc
Confidence 99988888721 137899999999999999999866664 44589999999999999
Q ss_pred EEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHHhcCCceEEeeCCCC
Q 010367 335 VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKVITSLPP 414 (512)
Q Consensus 335 ~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~~i~~~~~ 414 (512)
.+|+++..| ++...+|++.|+.|.| |.+.+|+|+||...+.|..++.+ .+..||.+-+|+.+...
T Consensus 811 r~~ifda~w-npchdaqavcRvyrYG-----------Q~KpcfvYRlVmD~~lEkkIydR---QIsKqGmsdRvVDd~np 875 (1387)
T KOG1016|consen 811 RCIIFDACW-NPCHDAQAVCRVYRYG-----------QQKPCFVYRLVMDNSLEKKIYDR---QISKQGMSDRVVDDANP 875 (1387)
T ss_pred eEEEEEeec-Cccccchhhhhhhhhc-----------CcCceeEEeehhhhhhHHHHHHH---HHhhccchhhhhcccCc
Confidence 777777777 9999999999999999 67789999999999999988754 46789999999887554
Q ss_pred C
Q 010367 415 P 415 (512)
Q Consensus 415 ~ 415 (512)
+
T Consensus 876 ~ 876 (1387)
T KOG1016|consen 876 D 876 (1387)
T ss_pred c
Confidence 3
No 99
>PRK09200 preprotein translocase subunit SecA; Reviewed
Probab=99.91 E-value=3.4e-23 Score=223.23 Aligned_cols=322 Identities=16% Similarity=0.181 Sum_probs=189.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
.+|||+.+.+..+..+. +.|..+.||+|||+++..++. ..++.++|++|+..|+.|-...+..++..-...++.
T Consensus 76 g~~p~~vQl~~~~~l~~---G~Iaem~TGeGKTL~a~lp~~l~al~G~~v~VvTpt~~LA~qd~e~~~~l~~~lGl~v~~ 152 (790)
T PRK09200 76 GMRPYDVQLIGALVLHE---GNIAEMQTGEGKTLTATMPLYLNALEGKGVHLITVNDYLAKRDAEEMGQVYEFLGLTVGL 152 (790)
T ss_pred CCCCchHHHHhHHHHcC---CceeeecCCCcchHHHHHHHHHHHHcCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEEE
Confidence 34555554555443333 339999999999999887764 236799999999999999888877776555567888
Q ss_pred EcCCcc-c---cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----------------
Q 010367 102 FTSDSK-E---RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----------------- 160 (512)
Q Consensus 102 ~~~~~~-~---~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----------------- 160 (512)
+.|+.. . +....++|+++|++.+....-|.+.... ......+.+.++|+||||.+.-+
T Consensus 153 i~g~~~~~~~r~~~y~~dIvygT~~~l~fDyLrd~~~~~-~~~~~~r~~~~~IvDEaDsiLiDea~tpliisg~~~~~~~ 231 (790)
T PRK09200 153 NFSDIDDASEKKAIYEADIIYTTNSELGFDYLRDNLADS-KEDKVQRPLNYAIIDEIDSILLDEAQTPLIISGKPRVQSN 231 (790)
T ss_pred EeCCCCcHHHHHHhcCCCEEEECCccccchhHHhccccc-hhhhcccccceEEEeccccceeccCCCceeeeCCCccccH
Confidence 877654 1 1235689999998877432111110000 01122367889999999998511
Q ss_pred HH---HHHHHhccc--c-------eEEEEcccCCCCcchHhhhHhhhC-CceeeecHHH---HHhC------------CC
Q 010367 161 MF---RKVISLTKS--H-------CKLGLTATLVREDERITDLNFLIG-PKLYEANWLD---LVKG------------GF 212 (512)
Q Consensus 161 ~~---~~~l~~~~~--~-------~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~---l~~~------------~~ 212 (512)
.| ..++..+.. + ..+.||..-. ..+..+++ +.+|.....+ .+.. .|
T Consensus 232 ~y~~~~~~~~~l~~~~dy~~d~~~~~~~lt~~g~------~~~e~~~~i~~l~~~~~~~~~~~i~~Al~A~~~~~~d~dY 305 (790)
T PRK09200 232 LYHIAAKFVKTLEEDVDYEFDEEKKEVWLTDQGI------EKAESYFGIDNLYSLEHQVLYRHIILALRAHVLFKRDVDY 305 (790)
T ss_pred HHHHHHHHHHhcccCCCeEEecCCCeEEecHhHH------HHHHHhcCCccccChhhhHHHHHHHHHHHHHHHhhcCCcE
Confidence 12 122222221 1 1233332111 01111111 1111111000 0000 01
Q ss_pred ccc-ceeEEEE-------------------------cCCC-----------HHHHHHHHHhh------chHHHHH--H--
Q 010367 213 IAN-VQCAEVW-------------------------CPMT-----------KEFFSEYLKKE------NSKKKQA--L-- 245 (512)
Q Consensus 213 l~~-~~~~~~~-------------------------~~~~-----------~~~~~~~l~~~------~~~~~~~--~-- 245 (512)
+.. -.+..+- ++++ ..+++.|-+-. ....... +
T Consensus 306 iV~~~~v~ivD~~TGr~~~gr~~s~GlhQaieaKe~v~i~~e~~t~a~It~q~~fr~Y~kl~GmTGTa~t~~~e~~~~Y~ 385 (790)
T PRK09200 306 IVYDGEIVLVDRFTGRVLPGRKLQDGLHQAIEAKEGVEITEENRTMASITIQNLFRMFPKLSGMTGTAKTEEKEFFEVYN 385 (790)
T ss_pred EEECCEEEEEECCCCcCCCCCccChHHHHHHHHhcCCCcCCCceehhhhhHHHHHHHhHHHhccCCCChHHHHHHHHHhC
Confidence 100 0000000 0000 11122222100 0000000 0
Q ss_pred ---------------------hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCceeCCCCH
Q 010367 246 ---------------------YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSH 299 (512)
Q Consensus 246 ---------------------~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~g~~~~ 299 (512)
+.....|+.++..++.... ..+.++||||+++..++.++..| + ...+||++.+
T Consensus 386 l~v~~IPt~kp~~r~d~~~~i~~~~~~K~~al~~~i~~~~-~~~~pvLIf~~t~~~se~l~~~L~~~gi~~~~L~~~~~~ 464 (790)
T PRK09200 386 MEVVQIPTNRPIIRIDYPDKVFVTLDEKYKAVIEEVKERH-ETGRPVLIGTGSIEQSETFSKLLDEAGIPHNLLNAKNAA 464 (790)
T ss_pred CcEEECCCCCCcccccCCCeEEcCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCCEEEecCCccH
Confidence 1112346666666664432 45889999999999999999999 3 3469999998
Q ss_pred HHHHHHHHHhhCCCCccEEEEeCCCcccccC---cccc-----EEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDI---PEAN-----VIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~t~~~~~GlDl---p~~~-----~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
.++..+...++.+ +|+|+|+++++|+|+ |.+. +||.++.|. |++.|.||.||+||.|.
T Consensus 465 ~e~~~i~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~GGL~VI~~d~p~-s~r~y~qr~GRtGR~G~ 530 (790)
T PRK09200 465 KEAQIIAEAGQKG---AVTVATNMAGRGTDIKLGEGVHELGGLAVIGTERME-SRRVDLQLRGRSGRQGD 530 (790)
T ss_pred HHHHHHHHcCCCC---eEEEEccchhcCcCCCcccccccccCcEEEeccCCC-CHHHHHHhhccccCCCC
Confidence 8888787777664 799999999999999 6888 999998876 99999999999999885
No 100
>PRK12898 secA preprotein translocase subunit SecA; Reviewed
Probab=99.90 E-value=8.4e-23 Score=215.82 Aligned_cols=323 Identities=15% Similarity=0.154 Sum_probs=194.0
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
...++|-|..++..++.+. |..+.||+|||+++..++... ++.++||+|+..|+.|-.+++..++..-...+
T Consensus 101 g~~p~~VQ~~~~~~ll~G~-----Iae~~TGeGKTla~~lp~~~~al~G~~v~VvTptreLA~qdae~~~~l~~~lGlsv 175 (656)
T PRK12898 101 GQRHFDVQLMGGLALLSGR-----LAEMQTGEGKTLTATLPAGTAALAGLPVHVITVNDYLAERDAELMRPLYEALGLTV 175 (656)
T ss_pred CCCCChHHHHHHHHHhCCC-----eeeeeCCCCcHHHHHHHHHHHhhcCCeEEEEcCcHHHHHHHHHHHHHHHhhcCCEE
Confidence 3567888999999887652 899999999999988777543 57899999999999998888887665445577
Q ss_pred EEEcCCcccc---ccCCCeEEEEchhhhhccCCCchhHH--------H----------HHHHHhcCCccEEEEcCCCCCC
Q 010367 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESE--------K----------IIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 100 ~~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~--------~----------~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
+.+.++.... ....++|+++|...+....-|.+... . ..+....+.+.++||||++.+.
T Consensus 176 ~~i~gg~~~~~r~~~y~~dIvygT~~e~~FDyLrd~~~~~~~~~~~~~~~~~l~~~~~~~~~~v~r~~~~aIvDEvDSiL 255 (656)
T PRK12898 176 GCVVEDQSPDERRAAYGADITYCTNKELVFDYLRDRLALGQRASDARLALESLHGRSSRSTQLLLRGLHFAIVDEADSVL 255 (656)
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECCCchhhhhccccccccccccchhhhhhhhccccCchhhhcccccceeEeeccccee
Confidence 7777764321 23568999999888877655543221 0 1112223678899999999874
Q ss_pred ch-------------------HHHHH---HHhccc--c-------eEEEEcccCCCCcchHhhhHhhhCC--ceeee--c
Q 010367 159 AH-------------------MFRKV---ISLTKS--H-------CKLGLTATLVREDERITDLNFLIGP--KLYEA--N 203 (512)
Q Consensus 159 ~~-------------------~~~~~---l~~~~~--~-------~~l~LTATp~~~~~~~~~l~~l~gp--~~~~~--~ 203 (512)
-+ .|..+ ...+.. + +.+.||-.-. ..+..+++. .+|.. .
T Consensus 256 iDeartpliis~~~~~~~~~~~y~~~~~~~~~l~~~~~y~~d~~~~~v~lt~~g~------~~~e~~~~~l~~~~~~~~~ 329 (656)
T PRK12898 256 IDEARTPLIISAPAKEADEAEVYRQALELAAQLKEGEDYTIDAAEKRIELTEAGR------ARIAELAESLPPAWRGAVR 329 (656)
T ss_pred eccCCCceEEECCCCCCchhHHHHHHHHHHHhcCCCCceEEECCCCeEEEcHHHH------HHHHHHhCcchhhcccchH
Confidence 11 12211 222211 1 2244442111 011111111 01110 0
Q ss_pred HHHHHhC------------CCccc-ceeEEEE-------------------------cCC-----------CHHHHHHHH
Q 010367 204 WLDLVKG------------GFIAN-VQCAEVW-------------------------CPM-----------TKEFFSEYL 234 (512)
Q Consensus 204 ~~~l~~~------------~~l~~-~~~~~~~-------------------------~~~-----------~~~~~~~~l 234 (512)
+...+.. .|+.. -.+..+. ++. ...+++.|-
T Consensus 330 ~~~~i~~Al~A~~l~~~d~dYiV~d~~V~ivD~~TGR~~~gr~w~~GLhQaieaKE~v~i~~e~~t~a~It~q~~Fr~Y~ 409 (656)
T PRK12898 330 REELVRQALSALHLFRRDEHYIVRDGKVVIVDEFTGRVMPDRSWEDGLHQMIEAKEGCELTDPRETLARITYQRFFRRYL 409 (656)
T ss_pred HHHHHHHHHHHHHHHhcCCceEEECCeEEEEECCCCeECCCCCcChHHHHHHHHhcCCCCCcCceeeeeehHHHHHHhhH
Confidence 1111110 01110 0000000 000 011222222
Q ss_pred Hhh------chHHHHH-------------------------HhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHH
Q 010367 235 KKE------NSKKKQA-------------------------LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTE 283 (512)
Q Consensus 235 ~~~------~~~~~~~-------------------------~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~ 283 (512)
+-. ......+ ++.....|+.++..++.... ..+.++||||+++..++.
T Consensus 410 kl~GmTGTa~~~~~El~~~y~l~vv~IPt~kp~~r~~~~~~v~~t~~~K~~aL~~~i~~~~-~~~~pvLIft~t~~~se~ 488 (656)
T PRK12898 410 RLAGMTGTAREVAGELWSVYGLPVVRIPTNRPSQRRHLPDEVFLTAAAKWAAVAARVRELH-AQGRPVLVGTRSVAASER 488 (656)
T ss_pred HHhcccCcChHHHHHHHHHHCCCeEEeCCCCCccceecCCEEEeCHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHH
Confidence 100 0000000 01112347777777776543 456789999999999999
Q ss_pred HHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCc---ccc-----EEEEecCCCCCHHHHH
Q 010367 284 YAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP---EAN-----VIIQISSHAGSRRQEA 350 (512)
Q Consensus 284 l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp---~~~-----~vI~~~~~~~s~~~~~ 350 (512)
++..|. ...+||+.+ +|+..+..|... ...|+|+|+++++|+|++ ++. +||.++.|. |.+.|.
T Consensus 489 L~~~L~~~gi~~~~Lhg~~~--~rE~~ii~~ag~-~g~VlVATdmAgRGtDI~l~~~V~~~GGLhVI~~d~P~-s~r~y~ 564 (656)
T PRK12898 489 LSALLREAGLPHQVLNAKQD--AEEAAIVARAGQ-RGRITVATNMAGRGTDIKLEPGVAARGGLHVILTERHD-SARIDR 564 (656)
T ss_pred HHHHHHHCCCCEEEeeCCcH--HHHHHHHHHcCC-CCcEEEEccchhcccCcCCccchhhcCCCEEEEcCCCC-CHHHHH
Confidence 999993 346899865 455555555554 457999999999999999 555 899998886 999999
Q ss_pred HHhhcccccCC
Q 010367 351 QRLGRILRAKG 361 (512)
Q Consensus 351 Q~~GR~~R~g~ 361 (512)
|++||+||.|.
T Consensus 565 hr~GRTGRqG~ 575 (656)
T PRK12898 565 QLAGRCGRQGD 575 (656)
T ss_pred HhcccccCCCC
Confidence 99999999884
No 101
>TIGR01054 rgy reverse gyrase. Generally, these gyrases are encoded as a single polypeptide. An exception was found in Methanopyrus kandleri, where enzyme is split within the topoisomerase domain, yielding a heterodimer of gene products designated RgyB and RgyA.
Probab=99.90 E-value=1.9e-22 Score=228.82 Aligned_cols=264 Identities=17% Similarity=0.197 Sum_probs=171.6
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhC---CCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWST---IQD 96 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~---~~~ 96 (512)
.+.|+|+|..++..++.+. +.++.+|||+|||..++.++..+ +.++|||+||++|+.|+.+.|..++. +..
T Consensus 76 g~~p~~iQ~~~i~~il~G~---d~vi~ApTGsGKT~f~l~~~~~l~~~g~~vLIL~PTreLa~Qi~~~l~~l~~~~~i~~ 152 (1171)
T TIGR01054 76 GSEPWSIQKMWAKRVLRGD---SFAIIAPTGVGKTTFGLAMSLFLAKKGKRCYIILPTTLLVIQVAEKISSLAEKAGVGT 152 (1171)
T ss_pred CCCCcHHHHHHHHHHhCCC---eEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeCHHHHHHHHHHHHHHHHHhcCCce
Confidence 4589999999999988775 89999999999998665444322 56899999999999999999998863 222
Q ss_pred CcEEEEcCCcccc--------c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-------
Q 010367 97 DQICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------- 160 (512)
Q Consensus 97 ~~v~~~~~~~~~~--------~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------- 160 (512)
..+..++|+.... + .+.++|+|+|++.|... +..+.. .++++|+||||++...
T Consensus 153 ~~i~~~~Gg~~~~e~~~~~~~l~~~~~dIlV~Tp~rL~~~----------~~~l~~-~~~~iVvDEaD~~L~~~k~vd~i 221 (1171)
T TIGR01054 153 VNIGAYHSRLPTKEKKEFMERIENGDFDILITTTMFLSKN----------YDELGP-KFDFIFVDDVDALLKASKNVDKL 221 (1171)
T ss_pred eeeeeecCCCCHHHHHHHHHHHhcCCCCEEEECHHHHHHH----------HHHhcC-CCCEEEEeChHhhhhccccHHHH
Confidence 2344577764211 1 24589999999988642 233322 7999999999999751
Q ss_pred ----HH-----HHHHH----------------------hcccc---eEEEEcccCCCCcchHhhhHhhhCCceeeecHHH
Q 010367 161 ----MF-----RKVIS----------------------LTKSH---CKLGLTATLVREDERITDLNFLIGPKLYEANWLD 206 (512)
Q Consensus 161 ----~~-----~~~l~----------------------~~~~~---~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~ 206 (512)
.| ..++. .++.. ..+.+|||+............+++ ++...
T Consensus 222 l~llGF~~e~i~~il~~~~~~~~~~~~~~~~~~~~~~~~~~~~~q~~li~~SAT~~p~~~~~~l~r~ll~---~~v~~-- 296 (1171)
T TIGR01054 222 LKLLGFSEELIEKAWKLIRLRLKLYRALHAKKRLELLEAIPGKKRGCLIVSSATGRPRGKRAKLFRELLG---FEVGG-- 296 (1171)
T ss_pred HHHcCCCHHHHHHHHHHhhhccccchHHHHHHHHHHHHhhhhccCcEEEEEeCCCCccccHHHHcccccc---eEecC--
Confidence 11 12111 11111 135679995432222111111111 11100
Q ss_pred HHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCH---HHHHH
Q 010367 207 LVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL---FALTE 283 (512)
Q Consensus 207 l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~---~~~~~ 283 (512)
....+..+....+.+. .+...+..+++.. +..+||||++. +.++.
T Consensus 297 --~~~~~r~I~~~~~~~~--------------------------~~~~~L~~ll~~l----~~~~IVFv~t~~~~~~a~~ 344 (1171)
T TIGR01054 297 --GSDTLRNVVDVYVEDE--------------------------DLKETLLEIVKKL----GTGGIVYVSIDYGKEKAEE 344 (1171)
T ss_pred --ccccccceEEEEEecc--------------------------cHHHHHHHHHHHc----CCCEEEEEeccccHHHHHH
Confidence 0001111111111110 0012233444332 46799999998 89999
Q ss_pred HHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEE----eCCCcccccCcc-ccEEEEecCC
Q 010367 284 YAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSH 342 (512)
Q Consensus 284 l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~----t~~~~~GlDlp~-~~~vI~~~~~ 342 (512)
++..|. +..+||+++ ++++++|++| +++|||+ |+++++|||+|+ +++||+++.|
T Consensus 345 l~~~L~~~g~~a~~lhg~~~----~~~l~~Fr~G-~~~vLVata~~tdv~aRGIDip~~V~~vI~~~~P 408 (1171)
T TIGR01054 345 IAEFLENHGVKAVAYHATKP----KEDYEKFAEG-EIDVLIGVASYYGTLVRGLDLPERVRYAVFLGVP 408 (1171)
T ss_pred HHHHHHhCCceEEEEeCCCC----HHHHHHHHcC-CCCEEEEeccccCcccccCCCCccccEEEEECCC
Confidence 999883 347999987 3689999998 9999999 489999999999 7999998655
No 102
>PRK14701 reverse gyrase; Provisional
Probab=99.90 E-value=1.5e-22 Score=234.03 Aligned_cols=284 Identities=16% Similarity=0.147 Sum_probs=182.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCC--CC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQ--DD 97 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~--~~ 97 (512)
.++++|.|.+++..++.+. +.++.+|||+|||+.++.++... +.++|||+||++|+.|+.+.|..++... ..
T Consensus 77 G~~pt~iQ~~~i~~il~G~---d~li~APTGsGKTl~~~~~al~~~~~g~~aLVl~PTreLa~Qi~~~l~~l~~~~~~~v 153 (1638)
T PRK14701 77 GFEFWSIQKTWAKRILRGK---SFSIVAPTGMGKSTFGAFIALFLALKGKKCYIILPTTLLVKQTVEKIESFCEKANLDV 153 (1638)
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEEcCCCCHHHHHHHHHHHHHhcCCeEEEEECHHHHHHHHHHHHHHHHhhcCCce
Confidence 4579999999999999875 89999999999999655444333 4589999999999999999999875322 23
Q ss_pred cEEEEcCCcccc--------c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc---------
Q 010367 98 QICRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--------- 159 (512)
Q Consensus 98 ~v~~~~~~~~~~--------~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~--------- 159 (512)
.+..++|+.... + .+.++|+|+|++.|... +..+....++++|+||||++..
T Consensus 154 ~v~~~~g~~s~~e~~~~~~~l~~g~~dILV~TPgrL~~~----------~~~l~~~~i~~iVVDEAD~ml~~~knid~~L 223 (1638)
T PRK14701 154 RLVYYHSNLRKKEKEEFLERIENGDFDILVTTAQFLARN----------FPEMKHLKFDFIFVDDVDAFLKASKNIDRSL 223 (1638)
T ss_pred eEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECCchhHHh----------HHHHhhCCCCEEEEECceeccccccccchhh
Confidence 456667764311 1 24689999999977543 1222236789999999999863
Q ss_pred --hHHHH--------HHH----------------------hccc-ce-EEEEcccCCCCcchHhhhHhhhCCceeeecHH
Q 010367 160 --HMFRK--------VIS----------------------LTKS-HC-KLGLTATLVREDERITDLNFLIGPKLYEANWL 205 (512)
Q Consensus 160 --~~~~~--------~l~----------------------~~~~-~~-~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~ 205 (512)
..|.. ++. .++. +. .+.+|||..........+ -.+..+.....
T Consensus 224 ~llGF~~e~~~~~~~il~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ll~~SAT~~~r~~~~~l~---~~~l~f~v~~~ 300 (1638)
T PRK14701 224 QLLGFYEEIIEKAWKIIYLKKQGNIEDAMEKREILNKEIEKIGNKIGCLIVASATGKAKGDRVKLY---RELLGFEVGSG 300 (1638)
T ss_pred hcCCChHHHHHHHHHhhhcccccccchhhhhhhhhhhhhhhcCCCccEEEEEecCCCchhHHHHHh---hcCeEEEecCC
Confidence 11211 111 1111 22 467899987532221111 11211221110
Q ss_pred HHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHH---HH
Q 010367 206 DLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFA---LT 282 (512)
Q Consensus 206 ~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~---~~ 282 (512)
...+..+....+.+ .. +.| ..+..+++. .+..+||||++... ++
T Consensus 301 ----~~~lr~i~~~yi~~--~~----------------------~~k-~~L~~ll~~----~g~~gIVF~~t~~~~e~ae 347 (1638)
T PRK14701 301 ----RSALRNIVDVYLNP--EK----------------------IIK-EHVRELLKK----LGKGGLIFVPIDEGAEKAE 347 (1638)
T ss_pred ----CCCCCCcEEEEEEC--CH----------------------HHH-HHHHHHHHh----CCCCeEEEEeccccchHHH
Confidence 01111111111111 10 001 123334432 25678999998764 58
Q ss_pred HHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEe----CCCcccccCcc-ccEEEEecCCC--CCHHHH-
Q 010367 283 EYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS----KVGDNSIDIPE-ANVIIQISSHA--GSRRQE- 349 (512)
Q Consensus 283 ~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t----~~~~~GlDlp~-~~~vI~~~~~~--~s~~~~- 349 (512)
.+++.|. +..+||+ |.+.+++|+++ +++|||+| +++++|||+|+ +..||+++.|. -|...|
T Consensus 348 ~la~~L~~~Gi~a~~~h~~-----R~~~l~~F~~G-~~~VLVaT~s~~gvaaRGIDiP~~Vryvi~~~~Pk~~~~~e~~~ 421 (1638)
T PRK14701 348 EIEKYLLEDGFKIELVSAK-----NKKGFDLFEEG-EIDYLIGVATYYGTLVRGLDLPERIRFAVFYGVPKFRFRVDLED 421 (1638)
T ss_pred HHHHHHHHCCCeEEEecch-----HHHHHHHHHcC-CCCEEEEecCCCCeeEecCccCCccCEEEEeCCCCCCcchhhcc
Confidence 8888883 3457884 88999999998 99999999 58999999999 89999997653 133333
Q ss_pred ------------HHHhhcccccCC
Q 010367 350 ------------AQRLGRILRAKG 361 (512)
Q Consensus 350 ------------~Q~~GR~~R~g~ 361 (512)
.+.+||++|.|.
T Consensus 422 ~~~~~~~~~~~~~~~~~~a~~~g~ 445 (1638)
T PRK14701 422 PTIYRILGLLSEILKIEEELKEGI 445 (1638)
T ss_pred cchhhhhcchHHHHHhhhhcccCC
Confidence 445699999885
No 103
>TIGR01967 DEAH_box_HrpA ATP-dependent helicase HrpA. This model represents HrpA, one of two related but uncharacterized DEAH-box ATP-dependent helicases in many Proteobacteria and a few high-GC Gram-positive bacteria. HrpA is about 1300 amino acids long, while its paralog HrpB, also uncharacterized, is about 800 amino acids long. Related characterized eukarotic proteins are RNA helicases associated with pre-mRNA processing.
Probab=99.89 E-value=1.7e-21 Score=218.67 Aligned_cols=293 Identities=14% Similarity=0.136 Sum_probs=182.7
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC----CCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
......+..+.+..+-.+. ..||+++||||||.+.-.++...+ +.+++.-|.+..+......+..-++.+...
T Consensus 65 ~LPi~~~~~~Il~~l~~~~---vvii~g~TGSGKTTqlPq~lle~~~~~~~~I~~tQPRRlAA~svA~RvA~elg~~lG~ 141 (1283)
T TIGR01967 65 NLPVSAKREDIAEAIAENQ---VVIIAGETGSGKTTQLPKICLELGRGSHGLIGHTQPRRLAARTVAQRIAEELGTPLGE 141 (1283)
T ss_pred CCCHHHHHHHHHHHHHhCc---eEEEeCCCCCCcHHHHHHHHHHcCCCCCceEecCCccHHHHHHHHHHHHHHhCCCcce
Confidence 3444445555555544443 789999999999998765555443 345666699988888888888776665443
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCC-CCchH-----HHHHHHhcccc
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPAHM-----FRKVISLTKSH 172 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~-~~~~~-----~~~~l~~~~~~ 172 (512)
..-|.-...+.......|.++|.++|...... ...+ ..+++|||||+|. ..+.. ..+++...+..
T Consensus 142 ~VGY~vR~~~~~s~~T~I~~~TdGiLLr~l~~-------d~~L--~~~~~IIIDEaHERsL~~D~LL~lLk~il~~rpdL 212 (1283)
T TIGR01967 142 KVGYKVRFHDQVSSNTLVKLMTDGILLAETQQ-------DRFL--SRYDTIIIDEAHERSLNIDFLLGYLKQLLPRRPDL 212 (1283)
T ss_pred EEeeEEcCCcccCCCceeeeccccHHHHHhhh-------Cccc--ccCcEEEEcCcchhhccchhHHHHHHHHHhhCCCC
Confidence 33333222333455688999999998753211 0122 6789999999994 54432 23333333445
Q ss_pred eEEEEcccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcc
Q 010367 173 CKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 251 (512)
++|+||||... . .+..+++. .+... .|-..++..... +........ ...
T Consensus 213 KlIlmSATld~--~---~fa~~F~~apvI~V-------~Gr~~PVev~Y~--~~~~~~~~~----------------~~~ 262 (1283)
T TIGR01967 213 KIIITSATIDP--E---RFSRHFNNAPIIEV-------SGRTYPVEVRYR--PLVEEQEDD----------------DLD 262 (1283)
T ss_pred eEEEEeCCcCH--H---HHHHHhcCCCEEEE-------CCCcccceeEEe--cccccccch----------------hhh
Confidence 78999999942 1 23334432 22211 122223332222 211100000 000
Q ss_pred hHHHHHHHHH-HhhhcCCCeEEEEecCHHHHHHHHHHhC--------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 252 KFRACEFLIR-FHEQQRGDKIIVFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 252 k~~~l~~ll~-~~~~~~g~k~iVf~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
+...+..++. .+. .....+|||+++...++.+++.|. +..+||++++++|.++++.+ +..+||++|+
T Consensus 263 ~~~~i~~~I~~l~~-~~~GdILVFLpg~~EI~~l~~~L~~~~~~~~~VlpLhg~Ls~~eQ~~vf~~~---~~rkIVLATN 338 (1283)
T TIGR01967 263 QLEAILDAVDELFA-EGPGDILIFLPGEREIRDAAEILRKRNLRHTEILPLYARLSNKEQQRVFQPH---SGRRIVLATN 338 (1283)
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEeCCCHHHHHHHHHHHHhcCCCCcEEEeccCCCCHHHHHHHhCCC---CCceEEEecc
Confidence 1112222222 122 234689999999999999999883 12489999999999986543 3468999999
Q ss_pred CCcccccCccccEEEEecC-----------------CCCCHHHHHHHhhcccccCC
Q 010367 323 VGDNSIDIPEANVIIQISS-----------------HAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~-----------------~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++++|||+|++.+||.... .+-|...+.||.||+||.++
T Consensus 339 IAEtSLTIpgV~yVIDsGl~r~~~yd~~~~~~~L~~~~ISkasa~QRaGRAGR~~~ 394 (1283)
T TIGR01967 339 VAETSLTVPGIHYVIDTGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVAP 394 (1283)
T ss_pred HHHhccccCCeeEEEeCCCccccccccccCccccCCccCCHHHHHHHhhhhCCCCC
Confidence 9999999999999997531 12267899999999999983
No 104
>PRK11131 ATP-dependent RNA helicase HrpA; Provisional
Probab=99.89 E-value=2.5e-21 Score=216.72 Aligned_cols=293 Identities=14% Similarity=0.099 Sum_probs=175.4
Q ss_pred cCCCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC----CCEEEEEcCh----hhHHHHHHHHH
Q 010367 18 MELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNA----VSVDQWAFQFK 89 (512)
Q Consensus 18 ~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~----~L~~Qw~~~~~ 89 (512)
+.+........+-.+.+..+.++. -.+++++||||||.+.-.++...+ +.+++.-|.+ +|+.+..+++.
T Consensus 67 ~~~~~~LPi~~~r~~Il~ai~~~~---VviI~GeTGSGKTTqlPq~lle~g~g~~g~I~~TQPRRlAArsLA~RVA~El~ 143 (1294)
T PRK11131 67 ITYPENLPVSQKKQDILEAIRDHQ---VVIVAGETGSGKTTQLPKICLELGRGVKGLIGHTQPRRLAARTVANRIAEELE 143 (1294)
T ss_pred cCCCCCCCHHHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHHcCCCCCCceeeCCCcHHHHHHHHHHHHHHHh
Confidence 334444555666666666655553 788889999999997554555443 2344444765 55555555555
Q ss_pred HhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCC-CCCchHHH-----
Q 010367 90 LWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVH-VVPAHMFR----- 163 (512)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH-~~~~~~~~----- 163 (512)
.-.|- .|+ |.-...+.....+.|+++|+++|....... .. ...+++||||||| +..+..|.
T Consensus 144 ~~lG~---~VG-Y~vrf~~~~s~~t~I~v~TpG~LL~~l~~d-------~~--Ls~~~~IIIDEAHERsLn~DfLLg~Lk 210 (1294)
T PRK11131 144 TELGG---CVG-YKVRFNDQVSDNTMVKLMTDGILLAEIQQD-------RL--LMQYDTIIIDEAHERSLNIDFILGYLK 210 (1294)
T ss_pred hhhcc---eec-eeecCccccCCCCCEEEEChHHHHHHHhcC-------Cc--cccCcEEEecCccccccccchHHHHHH
Confidence 42221 222 211222223456889999999997542210 11 2678999999999 45544332
Q ss_pred HHHHhcccceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHH-HHHHHHHhhchHH
Q 010367 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKE-FFSEYLKKENSKK 241 (512)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~-~~~~~l~~~~~~~ 241 (512)
.++...+..++|++|||... . .+..+++ ..+.+.. |-..++........-... ....++
T Consensus 211 ~lL~~rpdlKvILmSATid~--e---~fs~~F~~apvI~V~-------Gr~~pVei~y~p~~~~~~~~~~d~l------- 271 (1294)
T PRK11131 211 ELLPRRPDLKVIITSATIDP--E---RFSRHFNNAPIIEVS-------GRTYPVEVRYRPIVEEADDTERDQL------- 271 (1294)
T ss_pred HhhhcCCCceEEEeeCCCCH--H---HHHHHcCCCCEEEEc-------CccccceEEEeecccccchhhHHHH-------
Confidence 22222223578999999942 1 2333333 2222211 222233322222110000 000111
Q ss_pred HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---C-----CceeCCCCHHHHHHHHHHhhCCC
Q 010367 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---K-----PMIYGATSHVERTKILQAFKCSR 313 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---~-----~~i~g~~~~~eR~~il~~F~~~~ 313 (512)
..+...+..+.......+|||+++...++.+++.|. . ..+||++++.+|.++++. .+
T Consensus 272 ------------~~ll~~V~~l~~~~~GdILVFLpg~~EIe~lae~L~~~~~~~~~VlpLhg~Ls~~eQ~~Vf~~--~g- 336 (1294)
T PRK11131 272 ------------QAIFDAVDELGREGPGDILIFMSGEREIRDTADALNKLNLRHTEILPLYARLSNSEQNRVFQS--HS- 336 (1294)
T ss_pred ------------HHHHHHHHHHhcCCCCCEEEEcCCHHHHHHHHHHHHhcCCCcceEeecccCCCHHHHHHHhcc--cC-
Confidence 111111211111345689999999999999999983 2 247999999999999875 33
Q ss_pred CccEEEEeCCCcccccCccccEEEEec-----------------CCCCCHHHHHHHhhcccccC
Q 010367 314 DLNTIFLSKVGDNSIDIPEANVIIQIS-----------------SHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 314 ~~~vlv~t~~~~~GlDlp~~~~vI~~~-----------------~~~~s~~~~~Q~~GR~~R~g 360 (512)
..+|||+|+++++|||+|++++||.+. ..+.|...+.||.||+||.+
T Consensus 337 ~rkIIVATNIAEtSITIpgI~yVID~Gl~k~~~Yd~~~~~~~Lp~~~iSkasa~QRaGRAGR~~ 400 (1294)
T PRK11131 337 GRRIVLATNVAETSLTVPGIKYVIDPGTARISRYSYRTKVQRLPIEPISQASANQRKGRCGRVS 400 (1294)
T ss_pred CeeEEEeccHHhhccccCcceEEEECCCccccccccccCcccCCeeecCHhhHhhhccccCCCC
Confidence 789999999999999999999999852 01236688999999999987
No 105
>PRK09694 helicase Cas3; Provisional
Probab=99.89 E-value=1.6e-21 Score=213.98 Aligned_cols=311 Identities=16% Similarity=0.155 Sum_probs=185.8
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhC--CC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST--IQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~--~~ 95 (512)
.+.+||+|..+..... ++ ...||.+|||+|||.+++.++..+ ..++++..|+.+++.|..+++.+|.. .+
T Consensus 284 ~~~p~p~Q~~~~~~~~-~p--gl~ileApTGsGKTEAAL~~A~~l~~~~~~~gi~~aLPT~Atan~m~~Rl~~~~~~~f~ 360 (878)
T PRK09694 284 GYQPRQLQTLVDALPL-QP--GLTIIEAPTGSGKTEAALAYAWRLIDQGLADSIIFALPTQATANAMLSRLEALASKLFP 360 (878)
T ss_pred CCCChHHHHHHHhhcc-CC--CeEEEEeCCCCCHHHHHHHHHHHHHHhCCCCeEEEECcHHHHHHHHHHHHHHHHHHhcC
Confidence 5789999998754322 22 378999999999999999887653 25899999999999999999886531 12
Q ss_pred CCcEEEEcCCcccc--------------------------cc------CCCeEEEEchhhhhccC-CCchhHHHHHHHHh
Q 010367 96 DDQICRFTSDSKER--------------------------FR------GNAGVVVTTYNMVAFGG-KRSEESEKIIEEIR 142 (512)
Q Consensus 96 ~~~v~~~~~~~~~~--------------------------~~------~~~~Ivv~T~~~l~~~~-~r~~~~~~~~~~l~ 142 (512)
...+...+|...-. +. -...|+|+|.+.+.... ...+ ..+..+
T Consensus 361 ~~~v~L~Hg~a~l~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~kr~llapi~V~TiDQlL~a~l~~kh---~~lR~~- 436 (878)
T PRK09694 361 SPNLILAHGNSRFNHLFQSLKSRAATEQGQEEAWVQCCEWLSQSNKRVFLGQIGVCTIDQVLISVLPVKH---RFIRGF- 436 (878)
T ss_pred CCceEeecCcchhhhhhhhhhcccccccccchhhhHHHHHHhhhhhhhhcCCEEEcCHHHHHHHHHccch---HHHHHH-
Confidence 33566666543200 00 12689999987665321 1111 111211
Q ss_pred cCCccEEEEcCCCCCCchH---HHHHHHhcc--cceEEEEcccCCCCcchHhhhHhhhCCc---ee--eecHHHHHhCCC
Q 010367 143 NREWGLLLMDEVHVVPAHM---FRKVISLTK--SHCKLGLTATLVREDERITDLNFLIGPK---LY--EANWLDLVKGGF 212 (512)
Q Consensus 143 ~~~~~lvIiDEaH~~~~~~---~~~~l~~~~--~~~~l~LTATp~~~~~~~~~l~~l~gp~---~~--~~~~~~l~~~~~ 212 (512)
...-.+|||||+|.+...+ +..++..+. ...+|+||||++..- ...+...++.. .. .+.+......
T Consensus 437 ~La~svvIiDEVHAyD~ym~~lL~~~L~~l~~~g~~vIllSATLP~~~--r~~L~~a~~~~~~~~~~~~YPlvt~~~~-- 512 (878)
T PRK09694 437 GLGRSVLIVDEVHAYDAYMYGLLEAVLKAQAQAGGSVILLSATLPATL--KQKLLDTYGGHDPVELSSAYPLITWRGV-- 512 (878)
T ss_pred hhccCeEEEechhhCCHHHHHHHHHHHHHHHhcCCcEEEEeCCCCHHH--HHHHHHHhcccccccccccccccccccc--
Confidence 1223589999999997643 233333322 235899999996421 11122211211 00 0000000000
Q ss_pred cccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh-----c-CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHH
Q 010367 213 IANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV-----M-NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAM 286 (512)
Q Consensus 213 l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~-----~-~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~ 286 (512)
.......+...+. ....+..+.. . ......++..+++.. ..|.+++||||++..++.+++
T Consensus 513 ---~~~~~~~~~~~~~---------~~~~~~~v~v~~~~~~~~~~~~~~l~~i~~~~--~~g~~vLVf~NTV~~Aq~ly~ 578 (878)
T PRK09694 513 ---NGAQRFDLSAHPE---------QLPARFTIQLEPICLADMLPDLTLLQRMIAAA--NAGAQVCLICNLVDDAQKLYQ 578 (878)
T ss_pred ---ccceeeecccccc---------ccCcceEEEEEeeccccccCHHHHHHHHHHHH--hcCCEEEEEECCHHHHHHHHH
Confidence 0000000000000 0000000000 0 011123455555544 357899999999999999998
Q ss_pred HhC--------CCceeCCCCHHHH----HHHHHHh-hCCC--CccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHH
Q 010367 287 KLR--------KPMIYGATSHVER----TKILQAF-KCSR--DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (512)
Q Consensus 287 ~L~--------~~~i~g~~~~~eR----~~il~~F-~~~~--~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q 351 (512)
.|. +..+||.++..+| .++++.| +++. ...|||+|++++.|+|++ ++++|.... ....++|
T Consensus 579 ~L~~~~~~~~~v~llHsrf~~~dR~~~E~~vl~~fgk~g~r~~~~ILVaTQViE~GLDId-~DvlItdla---PidsLiQ 654 (878)
T PRK09694 579 RLKELNNTQVDIDLFHARFTLNDRREKEQRVIENFGKNGKRNQGRILVATQVVEQSLDLD-FDWLITQLC---PVDLLFQ 654 (878)
T ss_pred HHHhhCCCCceEEEEeCCCCHHHHHHHHHHHHHHHHhcCCcCCCeEEEECcchhheeecC-CCeEEECCC---CHHHHHH
Confidence 883 3468999999998 4678889 5442 257999999999999995 799887543 4568999
Q ss_pred HhhcccccCCC
Q 010367 352 RLGRILRAKGK 362 (512)
Q Consensus 352 ~~GR~~R~g~~ 362 (512)
|+||++|.+..
T Consensus 655 RaGR~~R~~~~ 665 (878)
T PRK09694 655 RLGRLHRHHRK 665 (878)
T ss_pred HHhccCCCCCC
Confidence 99999999863
No 106
>KOG0327 consensus Translation initiation factor 4F, helicase subunit (eIF-4A) and related helicases [Translation, ribosomal structure and biogenesis]
Probab=99.89 E-value=1.8e-22 Score=194.22 Aligned_cols=303 Identities=16% Similarity=0.178 Sum_probs=215.6
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC------CCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK------KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~------~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
+|-..|+.|+..+..+. +.++.+.+|+|||.+....+...- ..+|+++|+++|+.|..+.+..+.......
T Consensus 48 kPSaIQqraI~p~i~G~---dv~~qaqsgTgKt~af~i~iLq~iD~~~ke~qalilaPtreLa~qi~~v~~~lg~~~~~~ 124 (397)
T KOG0327|consen 48 KPSAIQQRAILPCIKGH---DVIAQAQSGTGKTAAFLISILQQIDMSVKETQALILAPTRELAQQIQKVVRALGDHMDVS 124 (397)
T ss_pred CchHHHhccccccccCC---ceeEeeeccccchhhhHHHHHhhcCcchHHHHHHHhcchHHHHHHHHHHHHhhhccccee
Confidence 56678999998877764 899999999999999776665541 369999999999999998888776555556
Q ss_pred EEEEcCCccc------cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH----HHHHh
Q 010367 99 ICRFTSDSKE------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR----KVISL 168 (512)
Q Consensus 99 v~~~~~~~~~------~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~----~~l~~ 168 (512)
+....|+..- .....++|++.|++.+....++. .+......++|+||++.+....|. .+...
T Consensus 125 v~~~igg~~~~~~~~~i~~~~~hivvGTpgrV~dml~~~--------~l~~~~iKmfvlDEaDEmLs~gfkdqI~~if~~ 196 (397)
T KOG0327|consen 125 VHACIGGTNVRREDQALLKDKPHIVVGTPGRVFDMLNRG--------SLSTDGIKMFVLDEADEMLSRGFKDQIYDIFQE 196 (397)
T ss_pred eeeecCcccchhhhhhhhccCceeecCCchhHHHhhccc--------cccccceeEEeecchHhhhccchHHHHHHHHHH
Confidence 6655554221 12345789999998776543321 233456789999999999876444 44455
Q ss_pred cccc-eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 169 TKSH-CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 169 ~~~~-~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
++.. +.+++|||-+..... ..-.+.-.|........++...|... --+..
T Consensus 197 lp~~vQv~l~SAT~p~~vl~-vt~~f~~~pv~i~vkk~~ltl~gikq----------------------------~~i~v 247 (397)
T KOG0327|consen 197 LPSDVQVVLLSATMPSDVLE-VTKKFMREPVRILVKKDELTLEGIKQ----------------------------FYINV 247 (397)
T ss_pred cCcchhheeecccCcHHHHH-HHHHhccCceEEEecchhhhhhheee----------------------------eeeec
Confidence 5443 789999998642211 11122333444333333332111110 00111
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
..+.|+..+..+.+. -...++||++.+.+..+...|. ...+||++.+.+|..++..|+.| ..+|||+|.
T Consensus 248 ~k~~k~~~l~dl~~~-----~~q~~if~nt~r~v~~l~~~L~~~~~~~s~~~~d~~q~~R~~~~~ef~~g-ssrvlIttd 321 (397)
T KOG0327|consen 248 EKEEKLDTLCDLYRR-----VTQAVIFCNTRRKVDNLTDKLRAHGFTVSAIHGDMEQNERDTLMREFRSG-SSRVLITTD 321 (397)
T ss_pred cccccccHHHHHHHh-----hhcceEEecchhhHHHHHHHHhhCCceEEEeecccchhhhhHHHHHhhcC-CceEEeecc
Confidence 112255555555552 3468999999999999999993 45799999999999999999998 999999999
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcH
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~ 387 (512)
.+++|+|+..++.||.|+.|. +...|++|+||+||.|. .....++++..+.
T Consensus 322 l~argidv~~~slvinydlP~-~~~~yihR~gr~gr~gr-------------kg~~in~v~~~d~ 372 (397)
T KOG0327|consen 322 LLARGIDVQQVSLVVNYDLPA-RKENYIHRIGRAGRFGR-------------KGVAINFVTEEDV 372 (397)
T ss_pred ccccccchhhcceeeeecccc-chhhhhhhcccccccCC-------------CceeeeeehHhhH
Confidence 999999999999999998885 99999999999999885 3555667766553
No 107
>KOG0353 consensus ATP-dependent DNA helicase [General function prediction only]
Probab=99.88 E-value=1.8e-21 Score=185.93 Aligned_cols=282 Identities=18% Similarity=0.182 Sum_probs=195.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~ 104 (512)
+.||.|.++++..+.+. ..++.+|||.||++++..++....+-+|||||...|++...-.+++. |++......-++
T Consensus 94 kfrplq~~ain~~ma~e---d~~lil~tgggkslcyqlpal~adg~alvi~plislmedqil~lkql-gi~as~lnanss 169 (695)
T KOG0353|consen 94 KFRPLQLAAINATMAGE---DAFLILPTGGGKSLCYQLPALCADGFALVICPLISLMEDQILQLKQL-GIDASMLNANSS 169 (695)
T ss_pred hcChhHHHHhhhhhccC---ceEEEEeCCCccchhhhhhHHhcCCceEeechhHHHHHHHHHHHHHh-CcchhhccCccc
Confidence 57999999999988876 89999999999999999999999999999999999999888888876 555432222111
Q ss_pred Ccccc--------ccCCCeEEEEchhhhhccCCCchhHHHHHHHH----hcCCccEEEEcCCCCCCc------h--HHHH
Q 010367 105 DSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI----RNREWGLLLMDEVHVVPA------H--MFRK 164 (512)
Q Consensus 105 ~~~~~--------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l----~~~~~~lvIiDEaH~~~~------~--~~~~ 164 (512)
....+ .......+..||+.+.+. ..++..| ....+.++-+||+|++.. + .+-.
T Consensus 170 ke~~k~v~~~i~nkdse~kliyvtpekiaks-------k~~mnkleka~~~~~~~~iaidevhccsqwghdfr~dy~~l~ 242 (695)
T KOG0353|consen 170 KEEAKRVEAAITNKDSEFKLIYVTPEKIAKS-------KKFMNKLEKALEAGFFKLIAIDEVHCCSQWGHDFRPDYKALG 242 (695)
T ss_pred HHHHHHHHHHHcCCCceeEEEEecHHHHHHH-------HHHHHHHHHHhhcceeEEEeecceeehhhhCcccCcchHHHH
Confidence 11000 124577889999999874 3444443 346788999999999873 1 2222
Q ss_pred HH-HhcccceEEEEcccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCccc-ceeEEEEcCCCHHHHHHHHHhhchHH
Q 010367 165 VI-SLTKSHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIAN-VQCAEVWCPMTKEFFSEYLKKENSKK 241 (512)
Q Consensus 165 ~l-~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~-~~~~~~~~~~~~~~~~~~l~~~~~~~ 241 (512)
++ +.++....||||||....... +...+++- ..+ .+..|+-.+ ..+..+..|-+.+...+
T Consensus 243 ilkrqf~~~~iigltatatn~vl~--d~k~il~ie~~~------tf~a~fnr~nl~yev~qkp~n~dd~~e--------- 305 (695)
T KOG0353|consen 243 ILKRQFKGAPIIGLTATATNHVLD--DAKDILCIEAAF------TFRAGFNRPNLKYEVRQKPGNEDDCIE--------- 305 (695)
T ss_pred HHHHhCCCCceeeeehhhhcchhh--HHHHHHhHHhhh------eeecccCCCCceeEeeeCCCChHHHHH---------
Confidence 33 456777899999998754311 11111110 000 011233332 22333333333222221
Q ss_pred HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCcc
Q 010367 242 KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLN 316 (512)
Q Consensus 242 ~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~ 316 (512)
-+..+++- +..|...||||-+...++.++..|+ ...+|..+.+.+|...-+.|..+ ++.
T Consensus 306 -------------di~k~i~~--~f~gqsgiiyc~sq~d~ekva~alkn~gi~a~~yha~lep~dks~~hq~w~a~-eiq 369 (695)
T KOG0353|consen 306 -------------DIAKLIKG--DFAGQSGIIYCFSQKDCEKVAKALKNHGIHAGAYHANLEPEDKSGAHQGWIAG-EIQ 369 (695)
T ss_pred -------------HHHHHhcc--ccCCCcceEEEeccccHHHHHHHHHhcCccccccccccCcccccccccccccc-ceE
Confidence 11222211 1347788999999999999999983 34688889999999999999997 999
Q ss_pred EEEEeCCCcccccCccccEEEEecCCCCCHHHHHH
Q 010367 317 TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (512)
Q Consensus 317 vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q 351 (512)
|+|+|-+.++|||-|++..||+.+-+. |...|.|
T Consensus 370 vivatvafgmgidkpdvrfvihhsl~k-sienyyq 403 (695)
T KOG0353|consen 370 VIVATVAFGMGIDKPDVRFVIHHSLPK-SIENYYQ 403 (695)
T ss_pred EEEEEeeecccCCCCCeeEEEecccch-hHHHHHH
Confidence 999999999999999999999986665 9999999
No 108
>COG0556 UvrB Helicase subunit of the DNA excision repair complex [DNA replication, recombination, and repair]
Probab=99.87 E-value=1.1e-20 Score=188.44 Aligned_cols=95 Identities=15% Similarity=0.296 Sum_probs=85.8
Q ss_pred cCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEec
Q 010367 266 QRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~ 340 (512)
..+.+++|-+-++++++.+.++| ++.++|++...-||.+|+...+.| .++|||....+.+|+|+|+++.|.++|
T Consensus 444 ~~~eRvLVTtLTKkmAEdLT~Yl~e~gikv~YlHSdidTlER~eIirdLR~G-~~DvLVGINLLREGLDiPEVsLVAIlD 522 (663)
T COG0556 444 AKNERVLVTTLTKKMAEDLTEYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLPEVSLVAILD 522 (663)
T ss_pred hcCCeEEEEeehHHHHHHHHHHHHhcCceEEeeeccchHHHHHHHHHHHhcC-CccEEEeehhhhccCCCcceeEEEEee
Confidence 46789999999999999999999 456899999999999999999998 999999999999999999999888875
Q ss_pred CCC----CCHHHHHHHhhcccccCC
Q 010367 341 SHA----GSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 341 ~~~----~s~~~~~Q~~GR~~R~g~ 361 (512)
... .|.+..+|.+||+.|.-.
T Consensus 523 ADKeGFLRse~SLIQtIGRAARN~~ 547 (663)
T COG0556 523 ADKEGFLRSERSLIQTIGRAARNVN 547 (663)
T ss_pred cCccccccccchHHHHHHHHhhccC
Confidence 542 377889999999999873
No 109
>KOG0947 consensus Cytoplasmic exosomal RNA helicase SKI2, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=1.3e-21 Score=205.53 Aligned_cols=316 Identities=17% Similarity=0.137 Sum_probs=208.9
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
+...|.|-++|++|+..+..+. +..++++|.+|||++|-.+|+ ....++++..|-++|-.|-.++|+.-++
T Consensus 292 ~~~pFelD~FQk~Ai~~lerg~---SVFVAAHTSAGKTvVAEYAialaq~h~TR~iYTSPIKALSNQKfRDFk~tF~--- 365 (1248)
T KOG0947|consen 292 LIYPFELDTFQKEAIYHLERGD---SVFVAAHTSAGKTVVAEYAIALAQKHMTRTIYTSPIKALSNQKFRDFKETFG--- 365 (1248)
T ss_pred hhCCCCccHHHHHHHHHHHcCC---eEEEEecCCCCcchHHHHHHHHHHhhccceEecchhhhhccchHHHHHHhcc---
Confidence 3445788899999999877665 999999999999999755553 3457999999999999999999998765
Q ss_pred CcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcccc
Q 010367 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSH 172 (512)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~~~ 172 (512)
+++.++|+.. +..++.++|+|-+.|.+..-|+. +.+ ++...||+||+|.+.+. .|..++-.++.|
T Consensus 366 -DvgLlTGDvq--inPeAsCLIMTTEILRsMLYrga------dli--RDvE~VIFDEVHYiND~eRGvVWEEViIMlP~H 434 (1248)
T KOG0947|consen 366 -DVGLLTGDVQ--INPEASCLIMTTEILRSMLYRGA------DLI--RDVEFVIFDEVHYINDVERGVVWEEVIIMLPRH 434 (1248)
T ss_pred -ccceeeccee--eCCCcceEeehHHHHHHHHhccc------chh--hccceEEEeeeeecccccccccceeeeeecccc
Confidence 5678999866 45678899999998887755543 223 45678999999999864 677777777766
Q ss_pred -eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccce-eEEEEcC--C------CHHHHHH-----HHHhh
Q 010367 173 -CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQ-CAEVWCP--M------TKEFFSE-----YLKKE 237 (512)
Q Consensus 173 -~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~-~~~~~~~--~------~~~~~~~-----~l~~~ 237 (512)
..|+||||.++..+.-..+...-+..+|..+. .-.|+. -+.+|+. + ...+... +....
T Consensus 435 V~~IlLSATVPN~~EFA~WIGRtK~K~IyViST-------~kRPVPLEh~l~t~~~l~kiidq~g~fl~~~~~~a~~~~~ 507 (1248)
T KOG0947|consen 435 VNFILLSATVPNTLEFADWIGRTKQKTIYVIST-------SKRPVPLEHYLYTKKSLFKIIDQNGIFLLKGIKDAKDSLK 507 (1248)
T ss_pred ceEEEEeccCCChHHHHHHhhhccCceEEEEec-------CCCccceEEEEEeccceehhhcccchhhhhcchhhhhhhc
Confidence 67999999986544311221111222222211 001111 1112221 0 0111110 00000
Q ss_pred -----------chHH-H--HH---------H----hhcCcchH--HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh
Q 010367 238 -----------NSKK-K--QA---------L----YVMNPNKF--RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL 288 (512)
Q Consensus 238 -----------~~~~-~--~~---------~----~~~~~~k~--~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L 288 (512)
..+. + +. . ...+.++. .....++.++....--.+||||=++..|++++++|
T Consensus 508 ~~ak~~~~~~~~~~~~rgs~~~ggk~~~~~g~~r~~~~~~nrr~~~~~l~lin~L~k~~lLP~VvFvFSkkrCde~a~~L 587 (1248)
T KOG0947|consen 508 KEAKFVDVEKSDARGGRGSQKRGGKTNYHNGGSRGSGIGKNRRKQPTWLDLINHLRKKNLLPVVVFVFSKKRCDEYADYL 587 (1248)
T ss_pred ccccccccccccccccccccccCCcCCCCCCCcccccccccccccchHHHHHHHHhhcccCceEEEEEccccHHHHHHHH
Confidence 0000 0 00 0 01111122 23455555554344567999999999999999887
Q ss_pred --------------------------------------------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 289 --------------------------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 289 --------------------------------------------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
++++.||+.-+--.+-+.--|+.| -++|||+|...
T Consensus 588 ~~~nL~~~~EKseV~lfl~k~~~rLk~~DR~LPQvl~m~~ll~RGiaVHH~GlLPivKE~VE~LFqrG-lVKVLFATETF 666 (1248)
T KOG0947|consen 588 TNLNLTDSKEKSEVHLFLSKAVARLKGEDRNLPQVLSMRSLLLRGIAVHHGGLLPIVKEVVELLFQRG-LVKVLFATETF 666 (1248)
T ss_pred hccCcccchhHHHHHHHHHHHHHhcChhhccchHHHHHHHHHhhcchhhcccchHHHHHHHHHHHhcC-ceEEEeehhhh
Confidence 245678888777777777889998 99999999999
Q ss_pred cccccCccccEEEEe--cCCCC------CHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQI--SSHAG------SRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~--~~~~~------s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|.| |.+||+- +-+.| +|-.|.|+.|||||-|=
T Consensus 667 AMGVNMP-ARtvVF~Sl~KhDG~efR~L~PGEytQMAGRAGRRGl 710 (1248)
T KOG0947|consen 667 AMGVNMP-ARTVVFSSLRKHDGNEFRELLPGEYTQMAGRAGRRGL 710 (1248)
T ss_pred hhhcCCC-ceeEEeeehhhccCcceeecCChhHHhhhcccccccc
Confidence 9999999 5555542 11111 67899999999999984
No 110
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=99.87 E-value=2e-21 Score=208.55 Aligned_cols=304 Identities=16% Similarity=0.188 Sum_probs=194.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-hcC-------------CCEEEEEcChhhHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RIK-------------KSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~~-------------~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
.-+|.+.|-......+... .+.++|+|||+|||-+|+.-+. +++ .++++++|.++|++.|...|
T Consensus 307 ~~sLNrIQS~v~daAl~~~--EnmLlCAPTGaGKTNVAvLtiLqel~~h~r~dgs~nl~~fKIVYIAPmKaLvqE~Vgsf 384 (1674)
T KOG0951|consen 307 KQSLNRIQSKVYDAALRGD--ENMLLCAPTGAGKTNVAVLTILQELGNHLREDGSVNLAPFKIVYIAPMKALVQEMVGSF 384 (1674)
T ss_pred chhhhHHHHHHHHHHhcCc--CcEEEeccCCCCchHHHHHHHHHHHhcccccccceecccceEEEEeeHHHHHHHHHHHH
Confidence 3457777888877777665 3899999999999999876663 221 27999999999999999999
Q ss_pred HHhhCCCCCcEEEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC---chHHH
Q 010367 89 KLWSTIQDDQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP---AHMFR 163 (512)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~---~~~~~ 163 (512)
.+++..-...|...+|+.... --....|+|+|++..--..+.+++- ... .-+.++|+||.|.+. ++...
T Consensus 385 SkRla~~GI~V~ElTgD~~l~~~qieeTqVIV~TPEK~DiITRk~gdr-aY~-----qlvrLlIIDEIHLLhDdRGpvLE 458 (1674)
T KOG0951|consen 385 SKRLAPLGITVLELTGDSQLGKEQIEETQVIVTTPEKWDIITRKSGDR-AYE-----QLVRLLIIDEIHLLHDDRGPVLE 458 (1674)
T ss_pred HhhccccCcEEEEecccccchhhhhhcceeEEeccchhhhhhcccCch-hHH-----HHHHHHhhhhhhhcccccchHHH
Confidence 999765566788888875421 1256889999999774333322211 111 235799999999994 33332
Q ss_pred HHHHh--------cccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHH
Q 010367 164 KVISL--------TKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235 (512)
Q Consensus 164 ~~l~~--------~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 235 (512)
.+... -...+.+|||||.++-.+. ..+++- +..+++ .+.-...+||+..++..--
T Consensus 459 SIVaRt~r~ses~~e~~RlVGLSATLPNy~DV----~~Fl~v-----~~~glf------~fd~syRpvPL~qq~Igi~-- 521 (1674)
T KOG0951|consen 459 SIVARTFRRSESTEEGSRLVGLSATLPNYEDV----ASFLRV-----DPEGLF------YFDSSYRPVPLKQQYIGIT-- 521 (1674)
T ss_pred HHHHHHHHHhhhcccCceeeeecccCCchhhh----HHHhcc-----Cccccc------ccCcccCcCCccceEeccc--
Confidence 22211 1234679999999864433 121111 001111 1111112223222111100
Q ss_pred hhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---------------------------
Q 010367 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL--------------------------- 288 (512)
Q Consensus 236 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L--------------------------- 288 (512)
..+..++ ...||. ...+.+++... ..++|||+.+++..-..|+.+
T Consensus 522 ek~~~~~--~qamNe---~~yeKVm~~ag---k~qVLVFVHsRkET~ktA~aIRd~~le~dtls~fmre~s~s~eilrte 593 (1674)
T KOG0951|consen 522 EKKPLKR--FQAMNE---ACYEKVLEHAG---KNQVLVFVHSRKETAKTARAIRDKALEEDTLSRFMREDSASREILRTE 593 (1674)
T ss_pred cCCchHH--HHHHHH---HHHHHHHHhCC---CCcEEEEEEechHHHHHHHHHHHHHhhhhHHHHHHhcccchhhhhhhh
Confidence 0011111 222332 23344454443 479999999987654444433
Q ss_pred ---------------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE-----ecCCC-----
Q 010367 289 ---------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ-----ISSHA----- 343 (512)
Q Consensus 289 ---------------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~-----~~~~~----- 343 (512)
+.+..|.++...+|..+.+.|.++ .++|+++|..++.|+|+| +++||+ +++..
T Consensus 594 a~~~kn~dLkdLLpygfaIHhAGl~R~dR~~~EdLf~~g-~iqvlvstatlawgvnlp-ahtViikgtqvy~pekg~w~e 671 (1674)
T KOG0951|consen 594 AGQAKNPDLKDLLPYGFAIHHAGLNRKDRELVEDLFADG-HIQVLVSTATLAWGVNLP-AHTVIIKGTQVYDPEKGRWTE 671 (1674)
T ss_pred hhcccChhHHHHhhccceeeccCCCcchHHHHHHHHhcC-ceeEEEeehhhhhhcCCC-cceEEecCccccCcccCcccc
Confidence 234578999999999999999998 999999999999999999 566654 32221
Q ss_pred CCHHHHHHHhhcccccCC
Q 010367 344 GSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 344 ~s~~~~~Q~~GR~~R~g~ 361 (512)
.+|.+..|++||+||.+.
T Consensus 672 lsp~dv~qmlgragrp~~ 689 (1674)
T KOG0951|consen 672 LSPLDVMQMLGRAGRPQY 689 (1674)
T ss_pred CCHHHHHHHHhhcCCCcc
Confidence 278899999999999874
No 111
>PF04851 ResIII: Type III restriction enzyme, res subunit; InterPro: IPR006935 This entry represents a domain found in the N terminus of several proteins, including helicases, the R subunit (HsdR) of type I restriction endonucleases (3.1.21.3 from EC), the Res subunit of type III endonucleases (3.1.21.5 from EC), and the B subunit of excinuclease ABC (uvrB) [, , ].; GO: 0003677 DNA binding, 0005524 ATP binding, 0016787 hydrolase activity; PDB: 2Y3T_B 2W74_B 2FWR_A 2FZ4_A 3UWX_B 3H1T_A 3B6E_A 2FDC_A 1D9Z_A 1T5L_B ....
Probab=99.85 E-value=3.9e-21 Score=176.57 Aligned_cols=160 Identities=23% Similarity=0.414 Sum_probs=108.9
Q ss_pred CCCCcHHHHHHHHHHHhC---C-CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGN---G-RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~-~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
+++|||||.+++..++.. . ..+.+++.+|||+|||.+++.++..+..+++|+||+..|+.||.++|..+..-....
T Consensus 1 ~~~lr~~Q~~ai~~i~~~~~~~~~~~~~ll~~~tGsGKT~~~~~~~~~l~~~~l~~~p~~~l~~Q~~~~~~~~~~~~~~~ 80 (184)
T PF04851_consen 1 KYKLRPYQQEAIARIINSLENKKEERRVLLNAPTGSGKTIIALALILELARKVLIVAPNISLLEQWYDEFDDFGSEKYNF 80 (184)
T ss_dssp --EE-HHHHHHHHHHHHHHHTTSGCSEEEEEESTTSSHHHHHHHHHHHHHCEEEEEESSHHHHHHHHHHHHHHSTTSEEE
T ss_pred CCCCCHHHHHHHHHHHHHHHhcCCCCCEEEEECCCCCcChhhhhhhhccccceeEecCHHHHHHHHHHHHHHhhhhhhhh
Confidence 368999999999998742 1 235999999999999999999888877799999999999999999997764321100
Q ss_pred ------------EEEEcCCc----cccccCCCeEEEEchhhhhccCCCchhHH---HHHHHHhcCCccEEEEcCCCCCCc
Q 010367 99 ------------ICRFTSDS----KERFRGNAGVVVTTYNMVAFGGKRSEESE---KIIEEIRNREWGLLLMDEVHVVPA 159 (512)
Q Consensus 99 ------------v~~~~~~~----~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~---~~~~~l~~~~~~lvIiDEaH~~~~ 159 (512)
........ .........++++|++++........... ..........+++||+||||++.+
T Consensus 81 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~vI~DEaH~~~~ 160 (184)
T PF04851_consen 81 FEKSIKPAYDSKEFISIQDDISDKSESDNNDKDIILTTYQSLQSDIKEEKKIDESARRSYKLLKNKFDLVIIDEAHHYPS 160 (184)
T ss_dssp EE--GGGCCE-SEEETTTTEEEHHHHHCBSS-SEEEEEHHHHHHHHHH---------GCHHGGGGSESEEEEETGGCTHH
T ss_pred cccccccccccccccccccccccccccccccccchhhHHHHHHhhcccccccccchhhhhhhccccCCEEEEehhhhcCC
Confidence 00000000 00113567899999999976522100000 000112235789999999999998
Q ss_pred hH-HHHHHHhcccceEEEEcccCCC
Q 010367 160 HM-FRKVISLTKSHCKLGLTATLVR 183 (512)
Q Consensus 160 ~~-~~~~l~~~~~~~~l~LTATp~~ 183 (512)
.. ++.++. .....+|+|||||.|
T Consensus 161 ~~~~~~i~~-~~~~~~l~lTATp~r 184 (184)
T PF04851_consen 161 DSSYREIIE-FKAAFILGLTATPFR 184 (184)
T ss_dssp HHHHHHHHH-SSCCEEEEEESS-S-
T ss_pred HHHHHHHHc-CCCCeEEEEEeCccC
Confidence 87 888888 778889999999975
No 112
>TIGR00631 uvrb excinuclease ABC, B subunit. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University)
Probab=99.85 E-value=1.9e-19 Score=193.88 Aligned_cols=94 Identities=16% Similarity=0.298 Sum_probs=84.5
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEec
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~ 340 (512)
..|.++||||+++..++.+++.|. +.++||++++.+|.++++.|+.| .+.|+|+|+.+++|+|+|++++||+++
T Consensus 440 ~~g~~vLIf~~tk~~ae~L~~~L~~~gi~~~~lh~~~~~~eR~~~l~~fr~G-~i~VLV~t~~L~rGfDiP~v~lVvi~D 518 (655)
T TIGR00631 440 ARNERVLVTTLTKKMAEDLTDYLKELGIKVRYLHSEIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDLPEVSLVAILD 518 (655)
T ss_pred cCCCEEEEEECCHHHHHHHHHHHhhhccceeeeeCCCCHHHHHHHHHHHhcC-CceEEEEcChhcCCeeeCCCcEEEEeC
Confidence 468899999999999999999983 35689999999999999999998 999999999999999999999999886
Q ss_pred C----CCCCHHHHHHHhhcccccC
Q 010367 341 S----HAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 341 ~----~~~s~~~~~Q~~GR~~R~g 360 (512)
. ...+...|+|++||++|..
T Consensus 519 adifG~p~~~~~~iqriGRagR~~ 542 (655)
T TIGR00631 519 ADKEGFLRSERSLIQTIGRAARNV 542 (655)
T ss_pred cccccCCCCHHHHHHHhcCCCCCC
Confidence 2 1238899999999999975
No 113
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=99.85 E-value=7.5e-21 Score=202.73 Aligned_cols=344 Identities=17% Similarity=0.211 Sum_probs=222.9
Q ss_pred HHHHHHHHHh----CCCCcceEEEcCCCCcHHHHHHHHHHhcC------------CCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 30 QEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRIK------------KSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 30 Q~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~~------------~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
|.....+++. ....+.||++..+|.|||..++.++...+ +..||+||.. +..||..++.+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~ggIladd~glgkt~~ti~l~l~~~~~~~~~~~~~~~kttLivcp~s-~~~qW~~elek~~~ 213 (674)
T KOG1001|consen 135 LKQKYRWSLLKSREQQSLRGGILADDMGLGKTVKTIALILKQKLKSKEEDRQKEFKTTLIVCPTS-LLTQWKTELEKVTE 213 (674)
T ss_pred HHHHHHHHhhcccccCccccceEeeccccchHHHHHHHHHhcccCCcchhhccccCceeEecchH-HHHHHHHHHhccCC
Confidence 5555555432 23456899999999999999999886542 3589999977 59999999965544
Q ss_pred CCCCcEEEEcCCcccc-ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH--HHHHhcc
Q 010367 94 IQDDQICRFTSDSKER-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR--KVISLTK 170 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~--~~l~~~~ 170 (512)
.....|.+++|..++. .....+||+|||+++.+. .+....|-.+|+||+|.++++... +....+.
T Consensus 214 ~~~l~v~v~~gr~kd~~el~~~dVVltTy~il~~~------------~l~~i~w~Riildea~~ikn~~tq~~~a~~~L~ 281 (674)
T KOG1001|consen 214 EDKLSIYVYHGRTKDKSELNSYDVVLTTYDILKNS------------PLVKIKWLRIVLDEAHTIKNKDTQIFKAVCQLD 281 (674)
T ss_pred ccceEEEEecccccccchhcCCceEEeeHHHhhcc------------cccceeEEEEEeccccccCCcchHhhhhheeec
Confidence 4445677788722221 235577999999999752 122367889999999999987433 3445567
Q ss_pred cceEEEEcccCCCCcchHh-hhHhh--hCCceee------------ecH-HHHHh-------------------CC----
Q 010367 171 SHCKLGLTATLVREDERIT-DLNFL--IGPKLYE------------ANW-LDLVK-------------------GG---- 211 (512)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~-~l~~l--~gp~~~~------------~~~-~~l~~-------------------~~---- 211 (512)
+.++.+|||||.++.-... .+..+ ..|..-. .++ ..... .|
T Consensus 282 a~~RWcLtgtPiqn~~~~lysl~~fl~~~p~~~~~~~~~~i~~p~~~~~~~~~~k~l~~~L~~v~lrrtK~~~~~gk~i~ 361 (674)
T KOG1001|consen 282 AKYRWCLTGTPIQNNLDELYSLFKFLEIHPYCDQNYFKLLIQDPDERNKYKEGVKTLQGILKKVMLRRTKEMEVDGKPIL 361 (674)
T ss_pred cceeeeecCChhhhhHHHHHHHHHHhhcCCchhhHHHHHHhcChhhhhhHHHHHHHHHHHHHHHHhcccccccccCcccc
Confidence 8899999999997542211 11000 0010000 000 00000 01
Q ss_pred CcccceeEEEEcCCCHHH---HHHHHHhhch-------------------------------------------------
Q 010367 212 FIANVQCAEVWCPMTKEF---FSEYLKKENS------------------------------------------------- 239 (512)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~---~~~~l~~~~~------------------------------------------------- 239 (512)
.+.+......++....+. |.........
T Consensus 362 ~lppk~v~~~~~~~~~~e~~~y~~l~~~~~~~~~~~~~~~~~~~~Y~~~l~~lLrlrq~c~h~~lv~~~~~~~~~~~~~~ 441 (674)
T KOG1001|consen 362 ELPPKTVFVTEVDLSKSERSAYKALKANSRNQFSNYANEGTVSSTYAFFLKNLLRLRQACDHSLLVMYEMDSLGDSGSAA 441 (674)
T ss_pred ccCcceeEeeeccccHhHHHHHHHHhhhhhhHHHHHhhhchhhhhHHHHHHHHHHHHHHccchHhhhhhhhccccccccc
Confidence 222333444444444332 1111100000
Q ss_pred --HHH--HHH---hhc------------------------------C--------------------------------c
Q 010367 240 --KKK--QAL---YVM------------------------------N--------------------------------P 250 (512)
Q Consensus 240 --~~~--~~~---~~~------------------------------~--------------------------------~ 250 (512)
..+ ..+ ... + +
T Consensus 442 ~~~~~~i~~l~~~~~c~ic~~~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~~l~s~~~~~~~~~~~~~~s 521 (674)
T KOG1001|consen 442 ALIIRLIVDLSVSHWCHICCDLDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEKKLLSANPLPSIINDLLPES 521 (674)
T ss_pred hHHHHHHHHHhhccccccccccccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHHHHhhcccccchhhhccchh
Confidence 000 000 000 0 1
Q ss_pred chHHHHHHHHHHhhhcCC-CeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEE-eCC
Q 010367 251 NKFRACEFLIRFHEQQRG-DKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL-SKV 323 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g-~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~-t~~ 323 (512)
.|+..+..++...+ ... .+++||++.+..+..+...|. ...+.|.++...|.+.+..|..++.+.+++. .++
T Consensus 522 ~ki~~~~~~l~~~~-~s~~~kiiifsq~~~~l~l~~~~l~~~~~~~~~~~g~~~~~~r~~s~~~~~~~~~~~vll~Slka 600 (674)
T KOG1001|consen 522 SKIYAFLKILQAKE-MSEQPKIVIFSQLIWGLALVCLRLFFKGFVFLRYDGEMLMKIRTKSFTDFPCDPLVTALLMSLKA 600 (674)
T ss_pred hhhHHHHHHHhhcc-CCCCCceeeehhHHHHHHHhhhhhhhcccccchhhhhhHHHHHHhhhcccccCccHHHHHHHHHH
Confidence 12222222222111 111 399999999999888887773 2357899999999999999998778887765 599
Q ss_pred CcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHH
Q 010367 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (512)
|+.|+|+..|++|+..++|| ||....|++.|+||.| |.+.+++++++-.+|+|+.+.+-.+++.
T Consensus 601 g~~glnlt~a~~v~~~d~~w-np~~eeQaidR~hrig-----------q~k~v~v~r~~i~dtveer~l~iq~~K~ 664 (674)
T KOG1001|consen 601 GKVGLNLTAASHVLLMDPWW-NPAVEEQAIDRAHRIG-----------QTKPVKVSRFIIKDTVEERILKIQEKKR 664 (674)
T ss_pred hhhhhchhhhhHHHhhchhc-ChHHHHHHHHHHHHhc-----------ccceeeeeeehhhhccHHHHHHHHHHHH
Confidence 99999999999999998877 9999999999999999 6778999999999999998886555544
No 114
>COG4581 Superfamily II RNA helicase [DNA replication, recombination, and repair]
Probab=99.85 E-value=6.9e-20 Score=199.57 Aligned_cols=316 Identities=17% Similarity=0.118 Sum_probs=205.5
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.-.+.|-|+|++|+..+-.+. +.++++|||+|||+++..++. ..+.++++.+|.++|..|-+++|...++--..
T Consensus 115 ~~~F~LD~fQ~~a~~~Ler~e---sVlV~ApTssGKTvVaeyAi~~al~~~qrviYTsPIKALsNQKyrdl~~~fgdv~~ 191 (1041)
T COG4581 115 EYPFELDPFQQEAIAILERGE---SVLVCAPTSSGKTVVAEYAIALALRDGQRVIYTSPIKALSNQKYRDLLAKFGDVAD 191 (1041)
T ss_pred hCCCCcCHHHHHHHHHHhCCC---cEEEEccCCCCcchHHHHHHHHHHHcCCceEeccchhhhhhhHHHHHHHHhhhhhh
Confidence 346899999999999766554 999999999999999876664 34678999999999999999999876542144
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcccc-
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSH- 172 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~~~- 172 (512)
.+++++|+.. ..+++.|+|+|-+.|.+..-|.. ..+ .+...||+||+|.+... .|..++-.++.+
T Consensus 192 ~vGL~TGDv~--IN~~A~clvMTTEILRnMlyrg~------~~~--~~i~~ViFDEvHyi~D~eRG~VWEE~Ii~lP~~v 261 (1041)
T COG4581 192 MVGLMTGDVS--INPDAPCLVMTTEILRNMLYRGS------ESL--RDIEWVVFDEVHYIGDRERGVVWEEVIILLPDHV 261 (1041)
T ss_pred hccceeccee--eCCCCceEEeeHHHHHHHhccCc------ccc--cccceEEEEeeeeccccccchhHHHHHHhcCCCC
Confidence 5799999866 46677888888898887755542 222 56678999999999864 788888877766
Q ss_pred eEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcC--------CCHHHHHH--------HHH
Q 010367 173 CKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCP--------MTKEFFSE--------YLK 235 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~--------~~~~~~~~--------~l~ 235 (512)
..++||||......-...+...-. |...... .+-.-+-.+.+++. -...+..+ +..
T Consensus 262 ~~v~LSATv~N~~EF~~Wi~~~~~~~~~vv~t-------~~RpvPL~~~~~~~~~l~~lvde~~~~~~~~~~~a~~~l~~ 334 (1041)
T COG4581 262 RFVFLSATVPNAEEFAEWIQRVHSQPIHVVST-------EHRPVPLEHFVYVGKGLFDLVDEKKKFNAENFPSANRSLSC 334 (1041)
T ss_pred cEEEEeCCCCCHHHHHHHHHhccCCCeEEEee-------cCCCCCeEEEEecCCceeeeecccccchhhcchhhhhhhhc
Confidence 789999999865433222322212 2211110 00111111111111 00000000 000
Q ss_pred h----hc-hHHHHHHhh----------cCcch-HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----------
Q 010367 236 K----EN-SKKKQALYV----------MNPNK-FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------- 288 (512)
Q Consensus 236 ~----~~-~~~~~~~~~----------~~~~k-~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----------- 288 (512)
. .. .......+. ..+.+ ..++..+.. .+.-.+|+|+=++..|+.++..+
T Consensus 335 ~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~iv~~l~~----~~~lP~I~F~FSr~~Ce~~a~~~~~ldl~~~~~~ 410 (1041)
T COG4581 335 FSEKVRETDDGDVGRYARRTKALRGSAKGPAGRPEIVNKLDK----DNLLPAIVFSFSRRGCEEAAQILSTLDLVLTEEK 410 (1041)
T ss_pred cchhccccCccccccccccccccCCcccccccchHHHhhhhh----hcCCceEEEEEchhhHHHHHHHhcccccccCCcH
Confidence 0 00 000000000 01111 223333332 44667899988888777776554
Q ss_pred -----------------------------------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccc
Q 010367 289 -----------------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA 333 (512)
Q Consensus 289 -----------------------------------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~ 333 (512)
++.+.|+++=+..+..+...|+.| -++|+|+|-+.+.|+|.|.-
T Consensus 411 e~~i~~ii~~~i~~L~~ed~~lp~~~~~~~~~L~RGiavHH~GlLP~~K~~vE~Lfq~G-LvkvvFaTeT~s~GiNmPar 489 (1041)
T COG4581 411 ERAIREIIDHAIGDLAEEDRELPLQILEISALLLRGIAVHHAGLLPAIKELVEELFQEG-LVKVVFATETFAIGINMPAR 489 (1041)
T ss_pred HHHHHHHHHHHHhhcChhhhcCcccHHHHHHHHhhhhhhhccccchHHHHHHHHHHhcc-ceeEEeehhhhhhhcCCccc
Confidence 123468888888999999999998 99999999999999999955
Q ss_pred cEEEEe-------cCCCCCHHHHHHHhhcccccCC
Q 010367 334 NVIIQI-------SSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 334 ~~vI~~-------~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+-- ..-+-++..|.|..||+||.|.
T Consensus 490 tvv~~~l~K~dG~~~r~L~~gEy~QmsGRAGRRGl 524 (1041)
T COG4581 490 TVVFTSLSKFDGNGHRWLSPGEYTQMSGRAGRRGL 524 (1041)
T ss_pred ceeeeeeEEecCCceeecChhHHHHhhhhhccccc
Confidence 555531 1112388999999999999995
No 115
>KOG0948 consensus Nuclear exosomal RNA helicase MTR4, DEAD-box superfamily [RNA processing and modification]
Probab=99.85 E-value=1.2e-20 Score=193.68 Aligned_cols=327 Identities=15% Similarity=0.142 Sum_probs=209.1
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.|+|-|+|..|+.-+=++. +.++.+.|.+|||.+|-.+|+. -+.+|++..|-++|-.|-+++|..-++ +|
T Consensus 127 PF~LDpFQ~~aI~Cidr~e---SVLVSAHTSAGKTVVAeYAIA~sLr~kQRVIYTSPIKALSNQKYREl~~EF~----DV 199 (1041)
T KOG0948|consen 127 PFTLDPFQSTAIKCIDRGE---SVLVSAHTSAGKTVVAEYAIAMSLREKQRVIYTSPIKALSNQKYRELLEEFK----DV 199 (1041)
T ss_pred CcccCchHhhhhhhhcCCc---eEEEEeecCCCcchHHHHHHHHHHHhcCeEEeeChhhhhcchhHHHHHHHhc----cc
Confidence 4789999999999644433 9999999999999998666643 367999999999999999999987554 68
Q ss_pred EEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhccc-ceE
Q 010367 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS-HCK 174 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~~-~~~ 174 (512)
+..+|+.. +...+..+|+|-+.|.+..-|+.+ ++ ++...||+||+|.+... .|...+-.++. -+.
T Consensus 200 GLMTGDVT--InP~ASCLVMTTEILRsMLYRGSE---vm-----rEVaWVIFDEIHYMRDkERGVVWEETIIllP~~vr~ 269 (1041)
T KOG0948|consen 200 GLMTGDVT--INPDASCLVMTTEILRSMLYRGSE---VM-----REVAWVIFDEIHYMRDKERGVVWEETIILLPDNVRF 269 (1041)
T ss_pred ceeeccee--eCCCCceeeeHHHHHHHHHhccch---Hh-----heeeeEEeeeehhccccccceeeeeeEEeccccceE
Confidence 99999865 356678899999988877655432 22 45678999999999876 45544444443 366
Q ss_pred EEEcccCCCCcchHhhhHhhhC-Cc--eeee-cHHHHHhCCCcccc--eeEEEEcCCCHHH----HHHHHHhhchHH---
Q 010367 175 LGLTATLVREDERITDLNFLIG-PK--LYEA-NWLDLVKGGFIANV--QCAEVWCPMTKEF----FSEYLKKENSKK--- 241 (512)
Q Consensus 175 l~LTATp~~~~~~~~~l~~l~g-p~--~~~~-~~~~l~~~~~l~~~--~~~~~~~~~~~~~----~~~~l~~~~~~~--- 241 (512)
+.||||.++.-.--..+-.+.. |. +|.. ...-+ +.|+.|. .-....++-...| +...+..-....
T Consensus 270 VFLSATiPNA~qFAeWI~~ihkQPcHVVYTdyRPTPL--QHyifP~ggdGlylvVDek~~FrednF~~am~~l~~~~~~~ 347 (1041)
T KOG0948|consen 270 VFLSATIPNARQFAEWICHIHKQPCHVVYTDYRPTPL--QHYIFPAGGDGLYLVVDEKGKFREDNFQKAMSVLRKAGESD 347 (1041)
T ss_pred EEEeccCCCHHHHHHHHHHHhcCCceEEeecCCCCcc--eeeeecCCCCeeEEEEecccccchHHHHHHHHHhhccCCCc
Confidence 8999999754332122222222 21 1110 00001 1122221 1011111111112 221110000000
Q ss_pred -------H-H--HHhhc---CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh--------------------
Q 010367 242 -------K-Q--ALYVM---NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------------------- 288 (512)
Q Consensus 242 -------~-~--~~~~~---~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-------------------- 288 (512)
+ + ..... ..+-+.++..++. .....+||||-+++.|+.+|-.+
T Consensus 348 ~~~~~~~k~~kG~~~~~~~~~s~i~kiVkmi~~----~~~~PVIvFSFSkkeCE~~Alqm~kldfN~deEk~~V~~iF~n 423 (1041)
T KOG0948|consen 348 GKKKANKKGRKGGTGGKGPGDSDIYKIVKMIME----RNYLPVIVFSFSKKECEAYALQMSKLDFNTDEEKELVETIFNN 423 (1041)
T ss_pred cccccccccccCCcCCCCCCcccHHHHHHHHHh----hcCCceEEEEecHhHHHHHHHhhccCcCCChhHHHHHHHHHHH
Confidence 0 0 00000 1122344444443 56789999999999999998766
Q ss_pred ------------------------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEe-----
Q 010367 289 ------------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI----- 339 (512)
Q Consensus 289 ------------------------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~----- 339 (512)
++.+.|+++-+--.+-+.=-|+.| -+++||+|...+.|+|.|.-++|+-.
T Consensus 424 Ai~~LseeDr~LPqie~iLPLL~RGIGIHHsGLLPIlKE~IEILFqEG-LvKvLFATETFsiGLNMPAkTVvFT~~rKfD 502 (1041)
T KOG0948|consen 424 AIDQLSEEDRELPQIENILPLLRRGIGIHHSGLLPILKEVIEILFQEG-LVKVLFATETFSIGLNMPAKTVVFTAVRKFD 502 (1041)
T ss_pred HHHhcChhhccchHHHHHHHHHHhccccccccchHHHHHHHHHHHhcc-HHHHHHhhhhhhhccCCcceeEEEeeccccC
Confidence 234567887766666666679998 99999999999999999955555542
Q ss_pred --cCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeC
Q 010367 340 --SSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (512)
Q Consensus 340 --~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~ 384 (512)
..-|-|.-.|+|+.||+||-| -+..+.+..+++.
T Consensus 503 G~~fRwissGEYIQMSGRAGRRG-----------~DdrGivIlmiDe 538 (1041)
T KOG0948|consen 503 GKKFRWISSGEYIQMSGRAGRRG-----------IDDRGIVILMIDE 538 (1041)
T ss_pred CcceeeecccceEEecccccccC-----------CCCCceEEEEecC
Confidence 122337778999999999999 4445677777764
No 116
>PF00176 SNF2_N: SNF2 family N-terminal domain; InterPro: IPR000330 This domain is found in proteins involved in a variety of processes including transcription regulation (e.g., SNF2, STH1, brahma, MOT1), DNA repair (e.g., ERCC6, RAD16, RAD5), DNA recombination (e.g., RAD54), and chromatin unwinding (e.g., ISWI) as well as a variety of other proteins with little functional information (e.g., lodestar, ETL1) [, ]. SNF2 functions as the ATPase component of the SNF2/SWI multisubunit complex, which utilises energy derived from ATP hydrolysis to disrupt histone-DNA interactions, resulting in the increased accessibility of DNA to transcription factors. Proteins that contain this domain appear to be distantly related to the DEAX box helicases IPR001410 from INTERPRO, however no helicase activity has ever been demonstrated for these proteins. ; GO: 0003677 DNA binding, 0005524 ATP binding; PDB: 1Z63_B 1Z3I_X 3DMQ_A 3MWY_W.
Probab=99.83 E-value=1.4e-19 Score=179.79 Aligned_cols=198 Identities=17% Similarity=0.257 Sum_probs=130.9
Q ss_pred HHHHHHHHHHhC----------CCCcceEEEcCCCCcHHHHHHHHHHhc---C-----CCEEEEEcChhhHHHHHHHHHH
Q 010367 29 YQEKSLSKMFGN----------GRARSGIIVLPCGAGKSLVGVSAACRI---K-----KSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 29 yQ~~al~~~~~~----------~~~~~~il~~~tG~GKTl~~i~~i~~~---~-----~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
||.+|+.+|+.. ...++++|+++||+|||+++++++..+ . +++|||||. .++.||..+|.+
T Consensus 1 ~Q~~~v~~m~~~~~~~~~~~~~~~~~g~lL~de~GlGKT~~~i~~~~~l~~~~~~~~~~~~LIv~P~-~l~~~W~~E~~~ 79 (299)
T PF00176_consen 1 HQLEAVRWMLDRELVEEYPNSESPPRGGLLADEMGLGKTITAIALISYLKNEFPQRGEKKTLIVVPS-SLLSQWKEEIEK 79 (299)
T ss_dssp HHHHHHHHHHHHH----TTSSSTTT-EEEE---TTSSHHHHHHHHHHHHHHCCTTSS-S-EEEEE-T-TTHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhhhhcccccccCCCCEEEEECCCCCchhhhhhhhhhhhhccccccccceeEeecc-chhhhhhhhhcc
Confidence 899999998654 345799999999999999999998743 1 259999999 578999999999
Q ss_pred hhCCCCCcEEEEcCCc-----cccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHH
Q 010367 91 WSTIQDDQICRFTSDS-----KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFR 163 (512)
Q Consensus 91 ~~~~~~~~v~~~~~~~-----~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~ 163 (512)
|+......+..+.+.. ........+++|+||+.+..... ....+.+...+|++||+||+|.+++. ...
T Consensus 80 ~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~vvi~ty~~~~~~~~-----~~~~~~l~~~~~~~vIvDEaH~~k~~~s~~~ 154 (299)
T PF00176_consen 80 WFDPDSLRVIIYDGDSERRRLSKNQLPKYDVVITTYETLRKARK-----KKDKEDLKQIKWDRVIVDEAHRLKNKDSKRY 154 (299)
T ss_dssp HSGT-TS-EEEESSSCHHHHTTSSSCCCSSEEEEEHHHHH--TS-----THTTHHHHTSEEEEEEETTGGGGTTTTSHHH
T ss_pred ccccccccccccccccccccccccccccceeeeccccccccccc-----cccccccccccceeEEEeccccccccccccc
Confidence 9744345788888776 12234678899999999982111 11234455567999999999999754 444
Q ss_pred HHHHhcccceEEEEcccCCCCcch-HhhhHhhhCCceee----------------------------------ecHHHHH
Q 010367 164 KVISLTKSHCKLGLTATLVREDER-ITDLNFLIGPKLYE----------------------------------ANWLDLV 208 (512)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~-~~~l~~l~gp~~~~----------------------------------~~~~~l~ 208 (512)
..+..+.+.++++|||||..++-. ...+..+++|..+. ....++
T Consensus 155 ~~l~~l~~~~~~lLSgTP~~n~~~dl~~~l~~L~~~~~~~~~~f~~~~~~~~~~~~~~~~~~L~~~l~~~~~r~~~~d~- 233 (299)
T PF00176_consen 155 KALRKLRARYRWLLSGTPIQNSLEDLYSLLRFLNPDPFSDRRSFKKWFYRPDKENSYENIERLRELLSEFMIRRTKKDV- 233 (299)
T ss_dssp HHHHCCCECEEEEE-SS-SSSGSHHHHHHHHHHCTTTCSSHHHHHHHTHHHHHTHHHHHHHHHHHHHCCCEECHCGGGG-
T ss_pred ccccccccceEEeeccccccccccccccchheeeccccccchhhhhhhhhhccccccccccccccccchhhhhhhcccc-
Confidence 455557889999999999987533 22333444544322 111111
Q ss_pred hCCCcccceeEEEEcCCCHHHHHHHH
Q 010367 209 KGGFIANVQCAEVWCPMTKEFFSEYL 234 (512)
Q Consensus 209 ~~~~l~~~~~~~~~~~~~~~~~~~~l 234 (512)
...+++.....+.+++++++...|.
T Consensus 234 -~~~lp~~~~~~~~~~ls~~q~~~Y~ 258 (299)
T PF00176_consen 234 -EKELPPKIEHVINVELSPEQRELYN 258 (299)
T ss_dssp -CTTSTCEEEEEEEEGG-HHHHHHHH
T ss_pred -cccCCceEEEEEEeCCCHHHHHHHH
Confidence 1245566777888999988766665
No 117
>KOG0950 consensus DNA polymerase theta/eta, DEAD-box superfamily [General function prediction only]
Probab=99.81 E-value=3.8e-19 Score=188.34 Aligned_cols=311 Identities=18% Similarity=0.192 Sum_probs=191.6
Q ss_pred CCCcHHHHHHHHH--HHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSK--MFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~--~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.++++||.+++.. ++++ .+.|..+||++|||+++-.++.+ .++.++.+.|-...+..-...+..++--...
T Consensus 222 ~~~fewq~ecls~~~~~e~---~nliys~Pts~gktlvaeilml~~~l~~rr~~llilp~vsiv~Ek~~~l~~~~~~~G~ 298 (1008)
T KOG0950|consen 222 LKLFEWQAECLSLPRLLER---KNLIYSLPTSAGKTLVAEILMLREVLCRRRNVLLILPYVSIVQEKISALSPFSIDLGF 298 (1008)
T ss_pred HHHHHHHHHHhcchhhhcc---cceEEeCCCccchHHHHHHHHHHHHHHHhhceeEecceeehhHHHHhhhhhhccccCC
Confidence 4688899999873 4433 38999999999999998666643 3578999999887666666666666422223
Q ss_pred cEEEEcCCc-cccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH--------HHHHHh
Q 010367 98 QICRFTSDS-KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF--------RKVISL 168 (512)
Q Consensus 98 ~v~~~~~~~-~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~--------~~~l~~ 168 (512)
.|..|.|.. +......-.+.|+|.++-.... ...++.=+....++||+||-|.+..... .+++-.
T Consensus 299 ~ve~y~g~~~p~~~~k~~sv~i~tiEkansli------n~lie~g~~~~~g~vvVdElhmi~d~~rg~~lE~~l~k~~y~ 372 (1008)
T KOG0950|consen 299 PVEEYAGRFPPEKRRKRESVAIATIEKANSLI------NSLIEQGRLDFLGMVVVDELHMIGDKGRGAILELLLAKILYE 372 (1008)
T ss_pred cchhhcccCCCCCcccceeeeeeehHhhHhHH------HHHHhcCCccccCcEEEeeeeeeeccccchHHHHHHHHHHHh
Confidence 455555542 2223355779999999776552 2334433335679999999999986522 222221
Q ss_pred ccc--ceEEEEcccCCCCcchHhhhHhhhCCceee-ecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchH-HHHH
Q 010367 169 TKS--HCKLGLTATLVREDERITDLNFLIGPKLYE-ANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSK-KKQA 244 (512)
Q Consensus 169 ~~~--~~~l~LTATp~~~~~~~~~l~~l~gp~~~~-~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~ 244 (512)
-.. -+.+|||||..+.......+...+-+..++ ..+.+.++-|.+ .. ..+ ..+.+ +.... ....
T Consensus 373 ~~~~~~~iIGMSATi~N~~lL~~~L~A~~y~t~fRPv~L~E~ik~G~~----i~----~~~---r~~~l-r~ia~l~~~~ 440 (1008)
T KOG0950|consen 373 NLETSVQIIGMSATIPNNSLLQDWLDAFVYTTRFRPVPLKEYIKPGSL----IY----ESS---RNKVL-REIANLYSSN 440 (1008)
T ss_pred ccccceeEeeeecccCChHHHHHHhhhhheecccCcccchhccCCCcc----cc----cch---hhHHH-HHhhhhhhhh
Confidence 122 247999999986655433333222111111 011111111111 00 000 00111 00000 0011
Q ss_pred HhhcCcch-HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----------------------------------
Q 010367 245 LYVMNPNK-FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----------------------------------- 288 (512)
Q Consensus 245 ~~~~~~~k-~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----------------------------------- 288 (512)
.-..+|+- ...|.+.+ ..+..+||||+++.-++.++..+
T Consensus 441 ~g~~dpD~~v~L~tet~-----~e~~~~lvfc~sk~~ce~~a~~~~~~vpk~~~~e~~~~~~~~~s~s~~lr~~~~~ld~ 515 (1008)
T KOG0950|consen 441 LGDEDPDHLVGLCTETA-----PEGSSVLVFCPSKKNCENVASLIAKKVPKHIKSEKRLGLWELLSISNLLRRIPGILDP 515 (1008)
T ss_pred cccCCCcceeeehhhhh-----hcCCeEEEEcCcccchHHHHHHHHHHhhHhhhhhhhhhHHHHHHHHhHhhcCCcccch
Confidence 11122211 12233333 45778999999999888877554
Q ss_pred --------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEe---cCCCCCHHHHHHHhhccc
Q 010367 289 --------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQI---SSHAGSRRQEAQRLGRIL 357 (512)
Q Consensus 289 --------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~---~~~~~s~~~~~Q~~GR~~ 357 (512)
+++++|.+++.++|+.+-..|+.+ .+.|+++|+.+.-|+|+|.-.++|-. ....-..-+|.|++||+|
T Consensus 516 Vl~~ti~~GvAyHhaGLT~eER~~iE~afr~g-~i~vl~aTSTlaaGVNLPArRVIiraP~~g~~~l~~~~YkQM~GRAG 594 (1008)
T KOG0950|consen 516 VLAKTIPYGVAYHHAGLTSEEREIIEAAFREG-NIFVLVATSTLAAGVNLPARRVIIRAPYVGREFLTRLEYKQMVGRAG 594 (1008)
T ss_pred HHheeccccceecccccccchHHHHHHHHHhc-CeEEEEecchhhccCcCCcceeEEeCCccccchhhhhhHHhhhhhhh
Confidence 245788999999999999999998 99999999999999999976677653 122336679999999999
Q ss_pred ccCC
Q 010367 358 RAKG 361 (512)
Q Consensus 358 R~g~ 361 (512)
|.|-
T Consensus 595 R~gi 598 (1008)
T KOG0950|consen 595 RTGI 598 (1008)
T ss_pred hccc
Confidence 9984
No 118
>PRK13104 secA preprotein translocase subunit SecA; Reviewed
Probab=99.81 E-value=4.8e-18 Score=183.30 Aligned_cols=116 Identities=22% Similarity=0.179 Sum_probs=93.3
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---CC--CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---RK--PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~~--~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.|+.++..-+.... ..|..+||||.+++..+.++..| ++ .++||+..+.||..+.+.|+.| .|+|+|++++
T Consensus 428 ~k~~av~~~i~~~~-~~g~PVLVgt~Sie~sE~ls~~L~~~gi~h~vLnak~~q~Ea~iia~Ag~~G---~VtIATNmAG 503 (896)
T PRK13104 428 DKFQAIIEDVRECG-VRKQPVLVGTVSIEASEFLSQLLKKENIKHQVLNAKFHEKEAQIIAEAGRPG---AVTIATNMAG 503 (896)
T ss_pred HHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCeEeecCCCChHHHHHHHhCCCCC---cEEEeccCcc
Confidence 46666555554333 58999999999999999999999 33 4699999999999999999998 4999999999
Q ss_pred ccccCccc------------------------------------c--EEEEecCCCCCHHHHHHHhhcccccCCCccccc
Q 010367 326 NSIDIPEA------------------------------------N--VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRM 367 (512)
Q Consensus 326 ~GlDlp~~------------------------------------~--~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~ 367 (512)
+|+|+.=- . +||.-..|. |.+...|..||+||-|.
T Consensus 504 RGtDI~Lggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe-srRID~QLrGRaGRQGD------ 576 (896)
T PRK13104 504 RGTDIVLGGSLAADLANLPADASEQEKEAVKKEWQKRHDEVIAAGGLRIIGSERHE-SRRIDNQLRGRAGRQGD------ 576 (896)
T ss_pred CCcceecCCchhhhhhccccchhhHHHHHHHHHhhhhhhHHHHcCCCEEEeeccCc-hHHHHHHhccccccCCC------
Confidence 99999621 1 666665666 99999999999999995
Q ss_pred cCCCCceeEEEEEE
Q 010367 368 AGGKEEYNAFFYSL 381 (512)
Q Consensus 368 ~~~~~~~~~~~y~l 381 (512)
+|...||.+|
T Consensus 577 ----PGss~f~lSl 586 (896)
T PRK13104 577 ----PGSSRFYLSL 586 (896)
T ss_pred ----CCceEEEEEc
Confidence 5555665554
No 119
>PRK12906 secA preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=1.1e-18 Score=187.33 Aligned_cols=106 Identities=20% Similarity=0.218 Sum_probs=88.8
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.|+.++...+.... ..|.++||||.++...+.++..| + ...+||+..+.|+.-+.+.++.+ .|+|+|+++|
T Consensus 424 ~K~~al~~~i~~~~-~~g~pvLI~t~si~~se~ls~~L~~~gi~~~~Lna~~~~~Ea~ii~~ag~~g---~VtIATnmAG 499 (796)
T PRK12906 424 SKFNAVVKEIKERH-AKGQPVLVGTVAIESSERLSHLLDEAGIPHAVLNAKNHAKEAEIIMNAGQRG---AVTIATNMAG 499 (796)
T ss_pred HHHHHHHHHHHHHH-hCCCCEEEEeCcHHHHHHHHHHHHHCCCCeeEecCCcHHHHHHHHHhcCCCc---eEEEEecccc
Confidence 36666666664333 57899999999999999999999 3 34689998888888888877776 5999999999
Q ss_pred ccccCc---ccc-----EEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 326 NSIDIP---EAN-----VIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 326 ~GlDlp---~~~-----~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|+|++ ++. +||.+..|. |.+.+.|+.||+||.|.
T Consensus 500 RGtDI~l~~~V~~~GGLhVI~te~pe-s~ri~~Ql~GRtGRqG~ 542 (796)
T PRK12906 500 RGTDIKLGPGVKELGGLAVIGTERHE-SRRIDNQLRGRSGRQGD 542 (796)
T ss_pred CCCCCCCCcchhhhCCcEEEeeecCC-cHHHHHHHhhhhccCCC
Confidence 999995 777 999997776 99999999999999985
No 120
>KOG0922 consensus DEAH-box RNA helicase [RNA processing and modification]
Probab=99.80 E-value=9.3e-18 Score=172.43 Aligned_cols=330 Identities=17% Similarity=0.178 Sum_probs=211.1
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC----CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEE
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~ 102 (512)
+.+-.+.+..+-.+. -.||.++||+|||.+.-.++.+.+ +.+.|.-|++..+....+....-.+.....-.-|
T Consensus 53 ~~~r~~il~~ve~nq---vlIviGeTGsGKSTQipQyL~eaG~~~~g~I~~TQPRRVAavslA~RVAeE~~~~lG~~VGY 129 (674)
T KOG0922|consen 53 YKYRDQILYAVEDNQ---VLIVIGETGSGKSTQIPQYLAEAGFASSGKIACTQPRRVAAVSLAKRVAEEMGCQLGEEVGY 129 (674)
T ss_pred HHHHHHHHHHHHHCC---EEEEEcCCCCCccccHhHHHHhcccccCCcEEeecCchHHHHHHHHHHHHHhCCCcCceeee
Confidence 333344444444443 889999999999999877776553 4588888999888888888776555443333333
Q ss_pred cCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC--ch----HHHHHHHhcccceEEE
Q 010367 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP--AH----MFRKVISLTKSHCKLG 176 (512)
Q Consensus 103 ~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~--~~----~~~~~l~~~~~~~~l~ 176 (512)
+-...+.......|.+.|-++|... ++..=...++++||+||||.-. .+ -.++++..-+.-++|.
T Consensus 130 ~IRFed~ts~~TrikymTDG~LLRE---------~l~Dp~LskYsvIIlDEAHERsl~TDiLlGlLKki~~~R~~LklIi 200 (674)
T KOG0922|consen 130 TIRFEDSTSKDTRIKYMTDGMLLRE---------ILKDPLLSKYSVIILDEAHERSLHTDILLGLLKKILKKRPDLKLII 200 (674)
T ss_pred EEEecccCCCceeEEEecchHHHHH---------HhcCCccccccEEEEechhhhhhHHHHHHHHHHHHHhcCCCceEEE
Confidence 3333333345688999999999642 2221113689999999999755 23 2344444444457899
Q ss_pred EcccCCCCcchHhhhHhhh-C-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHH
Q 010367 177 LTATLVREDERITDLNFLI-G-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFR 254 (512)
Q Consensus 177 LTATp~~~~~~~~~l~~l~-g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~ 254 (512)
+|||.. .. .+..+| + |.+.- .|-..|+++.....+ ...|+. .
T Consensus 201 mSATld--a~---kfS~yF~~a~i~~i--------~GR~fPVei~y~~~p-----~~dYv~------------------a 244 (674)
T KOG0922|consen 201 MSATLD--AE---KFSEYFNNAPILTI--------PGRTFPVEILYLKEP-----TADYVD------------------A 244 (674)
T ss_pred Eeeeec--HH---HHHHHhcCCceEee--------cCCCCceeEEeccCC-----chhhHH------------------H
Confidence 999994 11 122333 2 33322 355556655444433 223331 2
Q ss_pred HHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---------C----CceeCCCCHHHHHHHHHHhhCCCCccEEEEe
Q 010367 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---------K----PMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (512)
Q Consensus 255 ~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---------~----~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t 321 (512)
++.-+++.|...+..-+|||-...+.++..++.|. + .-+||.++.++..++++.-..| .-+|+++|
T Consensus 245 ~~~tv~~Ih~~E~~GDILvFLtGqeEIe~~~~~l~e~~~~~~~~~~~~~lply~aL~~e~Q~rvF~p~p~g-~RKvIlsT 323 (674)
T KOG0922|consen 245 ALITVIQIHLTEPPGDILVFLTGQEEIEAACELLRERAKSLPEDCPELILPLYGALPSEEQSRVFDPAPPG-KRKVILST 323 (674)
T ss_pred HHHHHHHHHccCCCCCEEEEeCCHHHHHHHHHHHHHHhhhccccCcceeeeecccCCHHHhhccccCCCCC-cceEEEEc
Confidence 33334444432344579999999999998888872 1 2489999999999997766665 77899999
Q ss_pred CCCcccccCccccEEEE--------ecC---------CCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeC
Q 010367 322 KVGDNSIDIPEANVIIQ--------ISS---------HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVST 384 (512)
Q Consensus 322 ~~~~~GlDlp~~~~vI~--------~~~---------~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~ 384 (512)
+++++++.+|++..||- +++ .+-|..+-.||.||+||.++ +..|+|.++
T Consensus 324 NIAETSlTI~GI~YVVDsG~vK~~~y~p~~g~~~L~v~~ISkasA~QRaGRAGRt~p--------------GkcyRLYte 389 (674)
T KOG0922|consen 324 NIAETSLTIDGIRYVVDSGFVKQKKYNPRTGLDSLIVVPISKASANQRAGRAGRTGP--------------GKCYRLYTE 389 (674)
T ss_pred ceeeeeEEecceEEEEcCCceEEEeeccccCccceeEEechHHHHhhhcccCCCCCC--------------ceEEEeeeH
Confidence 99999999999999884 211 12277888999999999995 345566654
Q ss_pred CcHh---------hHHHHHHHHHHHhcCCceEEeeCCCCCCCCC
Q 010367 385 DTQE---------MFYSTKRQQFLIDQGYSFKVITSLPPPDSGA 419 (512)
Q Consensus 385 ~t~e---------~~~~~~r~~~l~~~g~~~~~i~~~~~~~~~~ 419 (512)
...+ .........+|.-+++....+-.++.++.++
T Consensus 390 ~~~~~~~~~~~PEI~R~~Ls~~vL~Lkalgi~d~l~F~f~d~P~ 433 (674)
T KOG0922|consen 390 SAYDKMPLQTVPEIQRVNLSSAVLQLKALGINDPLRFPFIDPPP 433 (674)
T ss_pred HHHhhcccCCCCceeeechHHHHHHHHhcCCCCcccCCCCCCCC
Confidence 4332 2222223445554555555566666666554
No 121
>PRK12904 preprotein translocase subunit SecA; Reviewed
Probab=99.80 E-value=2.7e-18 Score=185.11 Aligned_cols=304 Identities=19% Similarity=0.204 Sum_probs=181.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccc---ccCCCeEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---FRGNAGVVV 118 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~---~~~~~~Ivv 118 (512)
+-|..+.||.|||+++..++. ..++.+-|++|+..|+.|-.+.+..++..-...++.+.++.... ..-.++|++
T Consensus 96 G~Iaem~TGeGKTLva~lpa~l~aL~G~~V~IvTpn~yLA~rd~e~~~~l~~~LGlsv~~i~~~~~~~er~~~y~~dI~y 175 (830)
T PRK12904 96 GKIAEMKTGEGKTLVATLPAYLNALTGKGVHVVTVNDYLAKRDAEWMGPLYEFLGLSVGVILSGMSPEERREAYAADITY 175 (830)
T ss_pred CchhhhhcCCCcHHHHHHHHHHHHHcCCCEEEEecCHHHHHHHHHHHHHHHhhcCCeEEEEcCCCCHHHHHHhcCCCeEE
Confidence 348889999999999877663 23568999999999999988888777655556788888764321 123589999
Q ss_pred EchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----------------HH---HHHHHhccc--c----
Q 010367 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----------------MF---RKVISLTKS--H---- 172 (512)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----------------~~---~~~l~~~~~--~---- 172 (512)
+|+..|....-|.+... ..+.+..+.+.++|+|||+.+.-+ .| ..++..+.. +
T Consensus 176 gT~~elgfDyLrd~~~~-~~~~~~~r~~~~aIvDEaDsiLIDeArtpLiiSg~~~~~~~~y~~~~~~v~~l~~~~dy~vd 254 (830)
T PRK12904 176 GTNNEFGFDYLRDNMVF-SLEERVQRGLNYAIVDEVDSILIDEARTPLIISGPAEDSSELYKRANKIVPTLEKEGDYTVD 254 (830)
T ss_pred ECCcchhhhhhhccccc-chhhhcccccceEEEechhhheeccCCCceeeECCCCcccHHHHHHHHHHHhcCCCCCeEEE
Confidence 99998854332222110 011222367889999999987511 12 223333321 1
Q ss_pred ---eEEEEcccCCCCcchHhhhHhhhC-Cceeeec---HHHHHhC------------CCccc-ceeEEEEcCCC------
Q 010367 173 ---CKLGLTATLVREDERITDLNFLIG-PKLYEAN---WLDLVKG------------GFIAN-VQCAEVWCPMT------ 226 (512)
Q Consensus 173 ---~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~---~~~l~~~------------~~l~~-~~~~~~~~~~~------ 226 (512)
+.+.||..-. ..+..+++ +.+|... +...+.. .|+.. -.+..+- ..+
T Consensus 255 e~~~~v~lte~G~------~~~e~~~~~~~ly~~~~~~~~~~i~~AL~A~~l~~~d~dYiV~dg~V~ivD-e~TGR~~~g 327 (830)
T PRK12904 255 EKSRTVGLTEEGI------EKAEKLLGIENLYDPENIALVHHLNQALRAHELFKRDVDYIVKDGEVVIVD-EFTGRLMPG 327 (830)
T ss_pred cCCCeeeECHHHH------HHHHHHhCCccccChhhhHHHHHHHHHHHHHHHHhcCCcEEEECCEEEEEE-CCCCccCCC
Confidence 2233432211 01111111 1111110 1111100 01110 0000000 000
Q ss_pred -------------------------------HHHHHHHHHhh------chHHHH-------------------------H
Q 010367 227 -------------------------------KEFFSEYLKKE------NSKKKQ-------------------------A 244 (512)
Q Consensus 227 -------------------------------~~~~~~~l~~~------~~~~~~-------------------------~ 244 (512)
..+++.|-+-. ...... .
T Consensus 328 r~ws~GLHQaiEaKE~v~i~~e~~t~a~It~qn~Fr~Y~kl~GmTGTa~te~~E~~~iY~l~vv~IPtnkp~~r~d~~d~ 407 (830)
T PRK12904 328 RRYSDGLHQAIEAKEGVKIQNENQTLASITFQNYFRMYEKLAGMTGTADTEAEEFREIYNLDVVVIPTNRPMIRIDHPDL 407 (830)
T ss_pred CccchHHHHHHHHhcCCCCCCCceeeeeeeHHHHHHhcchhcccCCCcHHHHHHHHHHhCCCEEEcCCCCCeeeeeCCCe
Confidence 11122221000 000000 0
Q ss_pred HhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---C--CceeCCCCHHHHHHHHHHhhCCCCccEEE
Q 010367 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR---K--PMIYGATSHVERTKILQAFKCSRDLNTIF 319 (512)
Q Consensus 245 ~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---~--~~i~g~~~~~eR~~il~~F~~~~~~~vlv 319 (512)
++.....|+.++...+.... ..|.++||||+++..++.++..|. + ..+||+ +.+|+..+..|..+ ...|+|
T Consensus 408 i~~t~~~K~~aI~~~I~~~~-~~grpVLIft~Si~~se~Ls~~L~~~gi~~~vLnak--q~eREa~Iia~Ag~-~g~VtI 483 (830)
T PRK12904 408 IYKTEKEKFDAVVEDIKERH-KKGQPVLVGTVSIEKSELLSKLLKKAGIPHNVLNAK--NHEREAEIIAQAGR-PGAVTI 483 (830)
T ss_pred EEECHHHHHHHHHHHHHHHH-hcCCCEEEEeCcHHHHHHHHHHHHHCCCceEeccCc--hHHHHHHHHHhcCC-CceEEE
Confidence 01112347777777775533 468899999999999999999993 3 357885 78999999999997 899999
Q ss_pred EeCCCcccccCccc-------------------------------------c-EEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 320 LSKVGDNSIDIPEA-------------------------------------N-VIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 320 ~t~~~~~GlDlp~~-------------------------------------~-~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
||+++++|+|++-- . +||.-..|. |.+...|..||+||-|.
T Consensus 484 ATNmAGRGtDI~LgGn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~GGLhVigTerhe-srRid~QlrGRagRQGd 562 (830)
T PRK12904 484 ATNMAGRGTDIKLGGNPEMLAAALLEEETEEQIAKIKAEWQEEHEEVLEAGGLHVIGTERHE-SRRIDNQLRGRSGRQGD 562 (830)
T ss_pred ecccccCCcCccCCCchhhhhhhhhhhhhhHHHHHHHHHHhhhhhhHHHcCCCEEEecccCc-hHHHHHHhhcccccCCC
Confidence 99999999999853 1 566655565 99999999999999985
No 122
>PRK05298 excinuclease ABC subunit B; Provisional
Probab=99.79 E-value=7.8e-17 Score=174.87 Aligned_cols=94 Identities=17% Similarity=0.318 Sum_probs=84.5
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEec
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~ 340 (512)
..|.++||||++...++.++..|. +.++||++++.+|.++++.|+.| .+.++|+|+++++|+|+|++++||+++
T Consensus 444 ~~g~~viIf~~t~~~ae~L~~~L~~~gi~~~~~h~~~~~~~R~~~l~~f~~g-~i~vlV~t~~L~rGfdlp~v~lVii~d 522 (652)
T PRK05298 444 AKGERVLVTTLTKRMAEDLTDYLKELGIKVRYLHSDIDTLERVEIIRDLRLG-EFDVLVGINLLREGLDIPEVSLVAILD 522 (652)
T ss_pred hCCCEEEEEeCCHHHHHHHHHHHhhcceeEEEEECCCCHHHHHHHHHHHHcC-CceEEEEeCHHhCCccccCCcEEEEeC
Confidence 468899999999999999999983 34689999999999999999997 899999999999999999999999986
Q ss_pred CC----CCCHHHHHHHhhcccccC
Q 010367 341 SH----AGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 341 ~~----~~s~~~~~Q~~GR~~R~g 360 (512)
.. +.+...|+||+||+||..
T Consensus 523 ~eifG~~~~~~~yiqr~GR~gR~~ 546 (652)
T PRK05298 523 ADKEGFLRSERSLIQTIGRAARNV 546 (652)
T ss_pred CcccccCCCHHHHHHHhccccCCC
Confidence 52 248899999999999964
No 123
>COG1203 CRISPR-associated helicase Cas3 [Defense mechanisms]
Probab=99.78 E-value=9.8e-18 Score=184.36 Aligned_cols=301 Identities=18% Similarity=0.123 Sum_probs=180.4
Q ss_pred CCcHHHHHHHHHHHhCCCCc-ceEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 25 QPRPYQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
..+++|.++++......... .+++.+|||+|||.+++.++... ..+++.+.|.++++++..+.+..+++...
T Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~vl~aPTG~GKT~asl~~a~~~~~~~~~~~~r~i~vlP~~t~ie~~~~r~~~~~~~~~ 274 (733)
T COG1203 195 EGYELQEKALELILRLEKRSLLVVLEAPTGYGKTEASLILALALLDEKIKLKSRVIYVLPFRTIIEDMYRRAKEIFGLFS 274 (733)
T ss_pred hhhHHHHHHHHHHHhcccccccEEEEeCCCCChHHHHHHHHHHHhhccccccceEEEEccHHHHHHHHHHHHHhhhcccc
Confidence 45899999999888765545 78899999999999988777432 35899999999999999999998865443
Q ss_pred CcEEEEcCCccccccCCC-e---EEEEchhhhhcc----------------CCCchhHHHHHHHHhcCCccEEEEcCCCC
Q 010367 97 DQICRFTSDSKERFRGNA-G---VVVTTYNMVAFG----------------GKRSEESEKIIEEIRNREWGLLLMDEVHV 156 (512)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~-~---Ivv~T~~~l~~~----------------~~r~~~~~~~~~~l~~~~~~lvIiDEaH~ 156 (512)
.....+++.......... . +.++|++..... .+.. .... +.. .-..++|+||+|.
T Consensus 275 ~~~~~~h~~~~~~~~~~~~~~~~~~~~~~ds~~~~~~~~~~~~~~~~~~~~~~~~-~~~~-~~~---l~~S~vIlDE~h~ 349 (733)
T COG1203 275 VIGKSLHSSSKEPLLLEPDQDILLTLTTNDSYKKLLLALIVVTPIQILIFSVKGF-KFEF-LAL---LLTSLVILDEVHL 349 (733)
T ss_pred cccccccccccchhhhccccccceeEEecccccceeccccccCHhHhhhhhcccc-chHH-HHH---HHhhchhhccHHh
Confidence 222213443222111111 1 333333322221 1111 1111 111 2346899999999
Q ss_pred CCch-HHHHHHHh---cc--cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHH
Q 010367 157 VPAH-MFRKVISL---TK--SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (512)
Q Consensus 157 ~~~~-~~~~~l~~---~~--~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 230 (512)
+... +...++.. +. ...+|.+|||++.... ..+...+++......... ....... .+. .....
T Consensus 350 ~~~~~~~~~l~~~i~~l~~~g~~ill~SATlP~~~~--~~l~~~~~~~~~~~~~~~-----~~~~~~e--~~~--~~~~~ 418 (733)
T COG1203 350 YADETMLAALLALLEALAEAGVPVLLMSATLPPFLK--EKLKKALGKGREVVENAK-----FCPKEDE--PGL--KRKER 418 (733)
T ss_pred hcccchHHHHHHHHHHHHhCCCCEEEEecCCCHHHH--HHHHHHHhcccceecccc-----ccccccc--ccc--ccccc
Confidence 9977 33322222 21 3468999999974322 223333332221111000 0000000 000 00000
Q ss_pred HHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHH
Q 010367 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKI 305 (512)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~i 305 (512)
.... . .+. ......+.... ..|.+++|.||++..+..++..|+ +..+||.+....|.+.
T Consensus 419 ~~~~---~----------~~~-~~~~~~~~~~~--~~~~kvlvI~NTV~~Aie~Y~~Lk~~~~~v~LlHSRf~~~dR~~k 482 (733)
T COG1203 419 VDVE---D----------GPQ-EELIELISEEV--KEGKKVLVIVNTVDRAIELYEKLKEKGPKVLLLHSRFTLKDREEK 482 (733)
T ss_pred hhhh---h----------hhh-Hhhhhcchhhh--ccCCcEEEEEecHHHHHHHHHHHHhcCCCEEEEecccchhhHHHH
Confidence 0000 0 000 01111122222 568899999999999999999993 3468999999999988
Q ss_pred HHHhhC---CCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 306 LQAFKC---SRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 306 l~~F~~---~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++.+.+ .....|+|+|++.+.|+|+. .+++|---+ .....+||.||++|.|.
T Consensus 483 e~~l~~~~~~~~~~IvVaTQVIEagvDid-fd~mITe~a---PidSLIQR~GRv~R~g~ 537 (733)
T COG1203 483 ERELKKLFKQNEGFIVVATQVIEAGVDID-FDVLITELA---PIDSLIQRAGRVNRHGK 537 (733)
T ss_pred HHHHHHHHhccCCeEEEEeeEEEEEeccc-cCeeeecCC---CHHHHHHHHHHHhhccc
Confidence 775442 23778999999999999996 888885322 56778999999999994
No 124
>COG1198 PriA Primosomal protein N' (replication factor Y) - superfamily II helicase [DNA replication, recombination, and repair]
Probab=99.77 E-value=3.5e-17 Score=175.05 Aligned_cols=310 Identities=17% Similarity=0.161 Sum_probs=182.9
Q ss_pred CCCCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
...|-+-|..|++.+... +.....++.+.||+|||-+++.++... ++.+||++|...|..|..+.|+..++ .+
T Consensus 196 ~~~Ln~~Q~~a~~~i~~~~~~~~~~Ll~GvTGSGKTEvYl~~i~~~L~~GkqvLvLVPEI~Ltpq~~~rf~~rFg---~~ 272 (730)
T COG1198 196 WLALNQEQQAAVEAILSSLGGFAPFLLDGVTGSGKTEVYLEAIAKVLAQGKQVLVLVPEIALTPQLLARFKARFG---AK 272 (730)
T ss_pred ccccCHHHHHHHHHHHHhcccccceeEeCCCCCcHHHHHHHHHHHHHHcCCEEEEEeccccchHHHHHHHHHHhC---CC
Confidence 457889999999998766 334689999999999999998888654 67999999999999999999999887 46
Q ss_pred EEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---------
Q 010367 99 ICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--------- 160 (512)
Q Consensus 99 v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--------- 160 (512)
|.+++++..+. ..+...|+|.|.+.+-. .+ .+.++||+||-|...-+
T Consensus 273 v~vlHS~Ls~~er~~~W~~~~~G~~~vVIGtRSAlF~------------Pf---~~LGLIIvDEEHD~sYKq~~~prYhA 337 (730)
T COG1198 273 VAVLHSGLSPGERYRVWRRARRGEARVVIGTRSALFL------------PF---KNLGLIIVDEEHDSSYKQEDGPRYHA 337 (730)
T ss_pred hhhhcccCChHHHHHHHHHHhcCCceEEEEechhhcC------------ch---hhccEEEEeccccccccCCcCCCcCH
Confidence 88888874432 24889999999976632 22 67899999999987622
Q ss_pred -HHHHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhC-C--CcccceeEEEEcC-------CCHHH
Q 010367 161 -MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKG-G--FIANVQCAEVWCP-------MTKEF 229 (512)
Q Consensus 161 -~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~-~--~l~~~~~~~~~~~-------~~~~~ 229 (512)
...-.........+++=||||.-+. ..+..-|....- .+.+. + ....+....+... +++..
T Consensus 338 RdvA~~Ra~~~~~pvvLgSATPSLES----~~~~~~g~y~~~----~L~~R~~~a~~p~v~iiDmr~e~~~~~~~lS~~L 409 (730)
T COG1198 338 RDVAVLRAKKENAPVVLGSATPSLES----YANAESGKYKLL----RLTNRAGRARLPRVEIIDMRKEPLETGRSLSPAL 409 (730)
T ss_pred HHHHHHHHHHhCCCEEEecCCCCHHH----HHhhhcCceEEE----EccccccccCCCcceEEeccccccccCccCCHHH
Confidence 1111222223335677799996211 111112211100 01111 1 1112221111110 22333
Q ss_pred HHHHHHhhchHHHHHHhhcCcc---------------hHHHHHHHHHHhh--------------------hcCCCeEEEE
Q 010367 230 FSEYLKKENSKKKQALYVMNPN---------------KFRACEFLIRFHE--------------------QQRGDKIIVF 274 (512)
Q Consensus 230 ~~~~l~~~~~~~~~~~~~~~~~---------------k~~~l~~ll~~~~--------------------~~~g~k~iVf 274 (512)
++..- ....+.++.+...|.. +..-|+.-+.+|. -..|...|++
T Consensus 410 l~~i~-~~l~~geQ~llflnRRGys~~l~C~~Cg~v~~Cp~Cd~~lt~H~~~~~L~CH~Cg~~~~~p~~Cp~Cgs~~L~~ 488 (730)
T COG1198 410 LEAIR-KTLERGEQVLLFLNRRGYAPLLLCRDCGYIAECPNCDSPLTLHKATGQLRCHYCGYQEPIPQSCPECGSEHLRA 488 (730)
T ss_pred HHHHH-HHHhcCCeEEEEEccCCccceeecccCCCcccCCCCCcceEEecCCCeeEeCCCCCCCCCCCCCCCCCCCeeEE
Confidence 33222 1122222222111110 0001111111111 0112222333
Q ss_pred e-cCHHH-HHHHHHHh-C--CCceeCCCCHH--HHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCC----
Q 010367 275 A-DNLFA-LTEYAMKL-R--KPMIYGATSHV--ERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHA---- 343 (512)
Q Consensus 275 ~-~~~~~-~~~l~~~L-~--~~~i~g~~~~~--eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~---- 343 (512)
+ ..++. .+++...| + +..+++++... .-..++..|.+| +.+|||.|+++..|.|+|+++.|.+++.+.
T Consensus 489 ~G~GterieeeL~~~FP~~rv~r~d~Dtt~~k~~~~~~l~~~~~g-e~dILiGTQmiaKG~~fp~vtLVgvl~aD~~L~~ 567 (730)
T COG1198 489 VGPGTERIEEELKRLFPGARIIRIDSDTTRRKGALEDLLDQFANG-EADILIGTQMIAKGHDFPNVTLVGVLDADTGLGS 567 (730)
T ss_pred ecccHHHHHHHHHHHCCCCcEEEEccccccchhhHHHHHHHHhCC-CCCeeecchhhhcCCCcccceEEEEEechhhhcC
Confidence 2 22222 34444444 2 33467776543 346789999998 999999999999999999999777653322
Q ss_pred ---C----CHHHHHHHhhcccccC
Q 010367 344 ---G----SRRQEAQRLGRILRAK 360 (512)
Q Consensus 344 ---~----s~~~~~Q~~GR~~R~g 360 (512)
. ..+.+.|..||+||.+
T Consensus 568 ~DfRA~Er~fqll~QvaGRAgR~~ 591 (730)
T COG1198 568 PDFRASERTFQLLMQVAGRAGRAG 591 (730)
T ss_pred CCcchHHHHHHHHHHHHhhhccCC
Confidence 1 2245699999999986
No 125
>COG1643 HrpA HrpA-like helicases [DNA replication, recombination, and repair]
Probab=99.76 E-value=1.7e-16 Score=172.19 Aligned_cols=334 Identities=17% Similarity=0.178 Sum_probs=208.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC----CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
....+..+-+..+-.+. -.+|++|||+|||.+.-.++...+ +.+.+.-|++..+....+.+..-++.+....+
T Consensus 50 Pv~~~~~~i~~ai~~~~---vvii~getGsGKTTqlP~~lle~g~~~~g~I~~tQPRRlAArsvA~RvAeel~~~~G~~V 126 (845)
T COG1643 50 PVTAVRDEILKAIEQNQ---VVIIVGETGSGKTTQLPQFLLEEGLGIAGKIGCTQPRRLAARSVAERVAEELGEKLGETV 126 (845)
T ss_pred CcHHHHHHHHHHHHhCC---EEEEeCCCCCChHHHHHHHHHhhhcccCCeEEecCchHHHHHHHHHHHHHHhCCCcCcee
Confidence 33444445555544454 899999999999998766665543 46777779998888888888887766555444
Q ss_pred EEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------HHHHHHHhccc-ce
Q 010367 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKS-HC 173 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~~~~~l~~~~~-~~ 173 (512)
-|.-...+.......|-++|-++|... +.+.-....+++||+||+|.-.-+ -...++...+. -+
T Consensus 127 GY~iRfe~~~s~~Trik~mTdGiLlre---------i~~D~~Ls~ys~vIiDEaHERSl~tDilLgllk~~~~~rr~DLK 197 (845)
T COG1643 127 GYSIRFESKVSPRTRIKVMTDGILLRE---------IQNDPLLSGYSVVIIDEAHERSLNTDILLGLLKDLLARRRDDLK 197 (845)
T ss_pred eEEEEeeccCCCCceeEEeccHHHHHH---------HhhCcccccCCEEEEcchhhhhHHHHHHHHHHHHHHhhcCCCce
Confidence 444444444456788999999999653 222222378999999999986633 22334444443 47
Q ss_pred EEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcch
Q 010367 174 KLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (512)
Q Consensus 174 ~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 252 (512)
+|.||||... . .+..+++ ..+.+. .|-..|++............ +
T Consensus 198 iIimSATld~--~---rfs~~f~~apvi~i-------~GR~fPVei~Y~~~~~~d~~----l------------------ 243 (845)
T COG1643 198 LIIMSATLDA--E---RFSAYFGNAPVIEI-------EGRTYPVEIRYLPEAEADYI----L------------------ 243 (845)
T ss_pred EEEEecccCH--H---HHHHHcCCCCEEEe-------cCCccceEEEecCCCCcchh----H------------------
Confidence 8999999942 2 2334444 222221 23444544433222211110 1
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCC---------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCC
Q 010367 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK---------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (512)
Q Consensus 253 ~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~---------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~ 323 (512)
...+...+..+.......+|||.+....++..++.|.. .-+||.++.++..++++--..+ .-+|+++|++
T Consensus 244 ~~ai~~~v~~~~~~~~GdILvFLpG~~EI~~~~~~L~~~~l~~~~~i~PLy~~L~~~eQ~rvF~p~~~~-~RKVVlATNI 322 (845)
T COG1643 244 LDAIVAAVDIHLREGSGSILVFLPGQREIERTAEWLEKAELGDDLEILPLYGALSAEEQVRVFEPAPGG-KRKVVLATNI 322 (845)
T ss_pred HHHHHHHHHHhccCCCCCEEEECCcHHHHHHHHHHHHhccccCCcEEeeccccCCHHHHHhhcCCCCCC-cceEEEEccc
Confidence 02233333333224456899999999999888887743 1379999999999987665554 4459999999
Q ss_pred CcccccCccccEEEE--------ecC---------CCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 324 GDNSIDIPEANVIIQ--------ISS---------HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~--------~~~---------~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
++++|.+|++.+||- |++ .+-|.....||.||+||.++ ...|.|.+++.
T Consensus 323 AETSLTI~gIr~VIDsG~ak~~~y~~~~g~~~L~~~~ISqAsA~QRaGRAGR~~p--------------GicyRLyse~~ 388 (845)
T COG1643 323 AETSLTIPGIRYVIDSGLAKEKRYDPRTGLTRLETEPISKASADQRAGRAGRTGP--------------GICYRLYSEED 388 (845)
T ss_pred cccceeeCCeEEEecCCcccccccccccCceeeeEEEechhhhhhhccccccCCC--------------ceEEEecCHHH
Confidence 999999999999984 111 11266778999999999994 44566666433
Q ss_pred ---------HhhHHHHHHHHHHHhcCCceE-EeeCCCCCCCCC
Q 010367 387 ---------QEMFYSTKRQQFLIDQGYSFK-VITSLPPPDSGA 419 (512)
Q Consensus 387 ---------~e~~~~~~r~~~l~~~g~~~~-~i~~~~~~~~~~ 419 (512)
.|+.......-.|....+... .+.+++.++..+
T Consensus 389 ~~~~~~~t~PEIlrtdLs~~vL~l~~~G~~~d~~~f~fld~P~ 431 (845)
T COG1643 389 FLAFPEFTLPEILRTDLSGLVLQLKSLGIGQDIAPFPFLDPPP 431 (845)
T ss_pred HHhcccCCChhhhhcchHHHHHHHHhcCCCCCcccCccCCCCC
Confidence 222222222334443333332 466666665554
No 126
>PRK13107 preprotein translocase subunit SecA; Reviewed
Probab=99.75 E-value=1.3e-16 Score=171.92 Aligned_cols=116 Identities=20% Similarity=0.191 Sum_probs=92.7
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.|+.++..-+.... ..|.++||||.++...+.++.+|. ..++|++.++.||..+.+.|+.| . |+|+|+++|
T Consensus 433 ~K~~Aii~ei~~~~-~~GrpVLV~t~sv~~se~ls~~L~~~gi~~~vLnak~~~~Ea~ii~~Ag~~G-~--VtIATnmAG 508 (908)
T PRK13107 433 EKYQAIIKDIKDCR-ERGQPVLVGTVSIEQSELLARLMVKEKIPHEVLNAKFHEREAEIVAQAGRTG-A--VTIATNMAG 508 (908)
T ss_pred HHHHHHHHHHHHHH-HcCCCEEEEeCcHHHHHHHHHHHHHCCCCeEeccCcccHHHHHHHHhCCCCC-c--EEEecCCcC
Confidence 46665544443333 579999999999999999999983 34689999999999999999998 4 999999999
Q ss_pred ccccCccc-------------------------------------cEEEEecCCCCCHHHHHHHhhcccccCCCcccccc
Q 010367 326 NSIDIPEA-------------------------------------NVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368 (512)
Q Consensus 326 ~GlDlp~~-------------------------------------~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 368 (512)
+|+|+.=- =+||.-..|. |.+...|..||+||-|.
T Consensus 509 RGTDIkLggn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGL~VIgTerhe-SrRID~QLrGRaGRQGD------- 580 (908)
T PRK13107 509 RGTDIVLGGNWNMEIEALENPTAEQKAKIKADWQIRHDEVVAAGGLHILGTERHE-SRRIDNQLRGRAGRQGD------- 580 (908)
T ss_pred CCcceecCCchHHhhhhhcchhhHHHHHHHHHHHhhHHHHHHcCCCEEEecccCc-hHHHHhhhhcccccCCC-------
Confidence 99999722 1666666666 99999999999999995
Q ss_pred CCCCceeEEEEEE
Q 010367 369 GGKEEYNAFFYSL 381 (512)
Q Consensus 369 ~~~~~~~~~~y~l 381 (512)
+|...||.+|
T Consensus 581 ---PGss~f~lSl 590 (908)
T PRK13107 581 ---AGSSRFYLSM 590 (908)
T ss_pred ---CCceeEEEEe
Confidence 5556665555
No 127
>KOG0329 consensus ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.74 E-value=1.2e-17 Score=152.23 Aligned_cols=259 Identities=17% Similarity=0.182 Sum_probs=168.9
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-cC-----CCEEEEEcChhhHHHHHHHHHHhhC-CCCCc
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK-----KSCLCLATNAVSVDQWAFQFKLWST-IQDDQ 98 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~-~~~~~ 98 (512)
+-..|.++++...-+- ..+..+..|.|||.+.+..... +. ..+||+|.+++|+.|...++.+|+. +|..+
T Consensus 65 psevqhecipqailgm---dvlcqaksgmgktavfvl~tlqqiepv~g~vsvlvmchtrelafqi~~ey~rfskymP~vk 141 (387)
T KOG0329|consen 65 PSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQIEPVDGQVSVLVMCHTRELAFQISKEYERFSKYMPSVK 141 (387)
T ss_pred chHhhhhhhhHHhhcc---hhheecccCCCceeeeehhhhhhcCCCCCeEEEEEEeccHHHHHHHHHHHHHHHhhCCCce
Confidence 4456888888665543 6788899999999887655443 31 2699999999999999999988865 45668
Q ss_pred EEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHHHhc--
Q 010367 99 ICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLT-- 169 (512)
Q Consensus 99 v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~-- 169 (512)
+.+|.|+..- .+..-++|+|+||+.+....+ -..+...+...+|+|||+.+... +++.+-..+
T Consensus 142 vaVFfGG~~Ikkdee~lk~~PhivVgTPGrilALvr--------~k~l~lk~vkhFvlDEcdkmle~lDMrRDvQEifr~ 213 (387)
T KOG0329|consen 142 VSVFFGGLFIKKDEELLKNCPHIVVGTPGRILALVR--------NRSLNLKNVKHFVLDECDKMLEQLDMRRDVQEIFRM 213 (387)
T ss_pred EEEEEcceeccccHHHHhCCCeEEEcCcHHHHHHHH--------hccCchhhcceeehhhHHHHHHHHHHHHHHHHHhhc
Confidence 8999987432 134578999999998765422 12233356778999999988754 344333333
Q ss_pred --ccceEEEEcccCCCCcchHhhhHhhhC-Cc-eeeecHHHHHhCCCcccceeEEEEcCCCHHH-HHHHHHhhchHHHHH
Q 010367 170 --KSHCKLGLTATLVREDERITDLNFLIG-PK-LYEANWLDLVKGGFIANVQCAEVWCPMTKEF-FSEYLKKENSKKKQA 244 (512)
Q Consensus 170 --~~~~~l~LTATp~~~~~~~~~l~~l~g-p~-~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~ 244 (512)
..+++..+|||...+-... ...+.. |. +|-.+.. .++-.- .+-|++.
T Consensus 214 tp~~KQvmmfsatlskeiRpv--C~kFmQdPmEi~vDdE~------------------KLtLHGLqQ~YvkL-------- 265 (387)
T KOG0329|consen 214 TPHEKQVMMFSATLSKEIRPV--CHKFMQDPMEIFVDDEA------------------KLTLHGLQQYYVKL-------- 265 (387)
T ss_pred CcccceeeeeeeecchhhHHH--HHhhhcCchhhhccchh------------------hhhhhhHHHHHHhh--------
Confidence 2346789999997432210 011110 00 0000000 011111 1222211
Q ss_pred HhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 245 ~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
....|-..+..|++.++ -..++||+.++..+. |+. + +++|++.
T Consensus 266 ---ke~eKNrkl~dLLd~Le---FNQVvIFvKsv~Rl~--------------------------f~k----r-~vat~lf 308 (387)
T KOG0329|consen 266 ---KENEKNRKLNDLLDVLE---FNQVVIFVKSVQRLS--------------------------FQK----R-LVATDLF 308 (387)
T ss_pred ---hhhhhhhhhhhhhhhhh---hcceeEeeehhhhhh--------------------------hhh----h-hHHhhhh
Confidence 11123344556666655 567999998876511 322 3 8899999
Q ss_pred cccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|+-.+|.+++|+-|. ++..|++|+||+||.|.
T Consensus 309 grgmdiervNi~~NYdmp~-~~DtYlHrv~rAgrfGt 344 (387)
T KOG0329|consen 309 GRGMDIERVNIVFNYDMPE-DSDTYLHRVARAGRFGT 344 (387)
T ss_pred ccccCcccceeeeccCCCC-CchHHHHHhhhhhcccc
Confidence 9999999999999998876 99999999999999994
No 128
>COG0610 Type I site-specific restriction-modification system, R (restriction) subunit and related helicases [Defense mechanisms]
Probab=99.73 E-value=2e-16 Score=177.28 Aligned_cols=328 Identities=17% Similarity=0.137 Sum_probs=203.5
Q ss_pred CcHHHHHHHHHH----HhC---CCCcceEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 26 PRPYQEKSLSKM----FGN---GRARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 26 Lr~yQ~~al~~~----~~~---~~~~~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
.+.+|..++... ... +..++|+|++-+|||||++++.++..+. ..+++|+.+..|-.|..++|..+..
T Consensus 249 ~~~~q~~av~~~i~~~~~~~~~~~~~~G~IWHtqGSGKTlTm~~~A~~l~~~~~~~~v~fvvDR~dLd~Q~~~~f~~~~~ 328 (962)
T COG0610 249 QRYAQYRAVQKAIKRILKASNPGDGKGGYIWHTQGSGKTLTMFKLARLLLELPKNPKVLFVVDRKDLDDQTSDEFQSFGK 328 (962)
T ss_pred HHHHHHHHHHHHHHHHHhccCCCcCCceEEEeecCCchHHHHHHHHHHHHhccCCCeEEEEechHHHHHHHHHHHHHHHH
Confidence 344566666532 111 3346899999999999999988886552 4799999999999999999999854
Q ss_pred CCCCcEEEEcCC-cccccc-CCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHH-HHhcc
Q 010367 94 IQDDQICRFTSD-SKERFR-GNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV-ISLTK 170 (512)
Q Consensus 94 ~~~~~v~~~~~~-~~~~~~-~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~-l~~~~ 170 (512)
.........+.. .++.+. ....|+|||.+.+....... ......+..-+||+||||+.-.....+. ...++
T Consensus 329 ~~~~~~~~~s~~~Lk~~l~~~~~~ii~TTIQKf~~~~~~~------~~~~~~~~~ivvI~DEaHRSQ~G~~~~~~~~~~~ 402 (962)
T COG0610 329 VAFNDPKAESTSELKELLEDGKGKIIVTTIQKFNKAVKED------ELELLKRKNVVVIIDEAHRSQYGELAKLLKKALK 402 (962)
T ss_pred hhhhcccccCHHHHHHHHhcCCCcEEEEEecccchhhhcc------cccccCCCcEEEEEechhhccccHHHHHHHHHhc
Confidence 322111001111 111122 34589999999987653211 1111235556999999999886644444 34455
Q ss_pred cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEE-EcCCCHHHHH-------HHHHhh-----
Q 010367 171 SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV-WCPMTKEFFS-------EYLKKE----- 237 (512)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~-~~~~~~~~~~-------~~l~~~----- 237 (512)
....+|+||||....+.. .-...+|..+..+...+.+..|.+.++.+... ..+...+... +.....
T Consensus 403 ~a~~~gFTGTPi~~~d~~-tt~~~fg~ylh~Y~i~daI~Dg~vl~i~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 481 (962)
T COG0610 403 KAIFIGFTGTPIFKEDKD-TTKDVFGDYLHTYTITDAIRDGAVLPVYYENRVELELIEESIKEEAEELDERIEEITEDIL 481 (962)
T ss_pred cceEEEeeCCcccccccc-chhhhhcceeEEEecchhhccCceeeEEEeecccccccccchhhhhhhhHHHHhhhHHHHH
Confidence 578899999999766553 23567888899999999999999887666554 2222211111 111000
Q ss_pred -ch----HHHHHHhhcCcchHHHHHHHHHHhh--hcCCCeEEEEecCHHHHHHHHHHhCC------------C----c--
Q 010367 238 -NS----KKKQALYVMNPNKFRACEFLIRFHE--QQRGDKIIVFADNLFALTEYAMKLRK------------P----M-- 292 (512)
Q Consensus 238 -~~----~~~~~~~~~~~~k~~~l~~ll~~~~--~~~g~k~iVf~~~~~~~~~l~~~L~~------------~----~-- 292 (512)
.. .....+.........+...+.+... ...+.++++.+.++..+..+.+.... . +
T Consensus 482 ~~~~k~~~~~~~~~~~~~r~~~~a~~i~~~f~~~~~~~~kam~V~~sr~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 561 (962)
T COG0610 482 EKIKKKTKNLEFLAMLAVRLIRAAKDIYDHFKKEEVFDLKAMVVASSRKVAVELYEAEIAARLDWHSKESLEGAIKDYNT 561 (962)
T ss_pred HHHHHHHhhhhHHhcchHHHHHHHHHHHHHHHhhcccCceEEEEEechHHHHHhHHHHhhhhhhhhhhhhhhhHHHHHHh
Confidence 00 0001122222333445555554433 13456888888877744333333200 0 0
Q ss_pred ---eeC------CCCHHHHHHHHHHh-hCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCC
Q 010367 293 ---IYG------ATSHVERTKILQAF-KCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK 362 (512)
Q Consensus 293 ---i~g------~~~~~eR~~il~~F-~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~ 362 (512)
... ......+.....+| ...+..++||.++++-+|+|.|.++++.+- -+. -....+|++.|+.|..++
T Consensus 562 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~d~~kilIV~dmlLTGFDaP~L~TmYvD-K~L-k~H~L~QAisRtNR~~~~ 639 (962)
T COG0610 562 EFETDFDKKQSHAKLKDEKKDLIKRFKLKDDPLDLLIVVDMLLTGFDAPCLNTLYVD-KPL-KYHNLIQAISRTNRVFPG 639 (962)
T ss_pred hcccchhhhhhhHHHHHHHhhhhhhhcCcCCCCCEEEEEccccccCCccccceEEec-ccc-ccchHHHHHHHhccCCCC
Confidence 001 11223444555564 444689999999999999999999998874 444 677889999999999986
No 129
>cd00268 DEADc DEAD-box helicases. A diverse family of proteins involved in ATP-dependent RNA unwinding, needed in a variety of cellular processes including splicing, ribosome biogenesis and RNA degradation. The name derives from the sequence of the Walker B motif (motif II). This domain contains the ATP- binding region.
Probab=99.73 E-value=2.9e-17 Score=153.76 Aligned_cols=149 Identities=17% Similarity=0.192 Sum_probs=109.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-hc-------CCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~-------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..|+++|.+++..++.+ ++.++++|||+|||++++.++. .+ +.+++|++|+.+|+.|+...+..+....
T Consensus 20 ~~~~~~Q~~~~~~~~~~---~~~li~~~TG~GKT~~~~~~~l~~~~~~~~~~~~~viii~p~~~L~~q~~~~~~~~~~~~ 96 (203)
T cd00268 20 EKPTPIQARAIPPLLSG---RDVIGQAQTGSGKTAAFLIPILEKLDPSPKKDGPQALILAPTRELALQIAEVARKLGKHT 96 (203)
T ss_pred CCCCHHHHHHHHHHhcC---CcEEEECCCCCcHHHHHHHHHHHHHHhhcccCCceEEEEcCCHHHHHHHHHHHHHHhccC
Confidence 46999999999999874 3899999999999999655542 11 2369999999999999999999986555
Q ss_pred CCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----HHHH
Q 010367 96 DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVI 166 (512)
Q Consensus 96 ~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~----~~~l 166 (512)
...+..++++... ......+|+|+|++.+.....+.. +.-..++++|+||+|.+.+..+ ..+.
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~~~~--------~~~~~l~~lIvDE~h~~~~~~~~~~~~~~~ 168 (203)
T cd00268 97 NLKVVVIYGGTSIDKQIRKLKRGPHIVVATPGRLLDLLERGK--------LDLSKVKYLVLDEADRMLDMGFEDQIREIL 168 (203)
T ss_pred CceEEEEECCCCHHHHHHHhcCCCCEEEEChHHHHHHHHcCC--------CChhhCCEEEEeChHHhhccChHHHHHHHH
Confidence 5567777776442 123478899999988765422211 1124678999999999875543 3334
Q ss_pred Hhcc-cceEEEEcccCCC
Q 010367 167 SLTK-SHCKLGLTATLVR 183 (512)
Q Consensus 167 ~~~~-~~~~l~LTATp~~ 183 (512)
..+. ....+++||||.+
T Consensus 169 ~~l~~~~~~~~~SAT~~~ 186 (203)
T cd00268 169 KLLPKDRQTLLFSATMPK 186 (203)
T ss_pred HhCCcccEEEEEeccCCH
Confidence 4444 4578999999984
No 130
>PF00270 DEAD: DEAD/DEAH box helicase; InterPro: IPR011545 Members of this family include the DEAD and DEAH box helicases. Helicases are involved in unwinding nucleic acids. The DEAD box helicases are involved in various aspects of RNA metabolism, including nuclear transcription, pre mRNA splicing, ribosome biogenesis, nucleocytoplasmic transport, translation, RNA decay and organellar gene expression. ; GO: 0003676 nucleic acid binding, 0005524 ATP binding, 0008026 ATP-dependent helicase activity; PDB: 3RRM_A 3RRN_A 3PEW_A 2KBE_A 3PEY_A 3FHO_A 2ZJA_A 2ZJ8_A 2ZJ5_A 2ZJ2_A ....
Probab=99.71 E-value=1.2e-16 Score=144.68 Aligned_cols=145 Identities=18% Similarity=0.249 Sum_probs=109.5
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c--C--CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I--K--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~--~--~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
.|+|.++++.+.++. +.++.+|||+|||++++.++.. + . ..++|++|+++|+.|..+++..++......+..
T Consensus 1 t~~Q~~~~~~i~~~~---~~li~aptGsGKT~~~~~~~l~~~~~~~~~~~lii~P~~~l~~q~~~~~~~~~~~~~~~~~~ 77 (169)
T PF00270_consen 1 TPLQQEAIEAIISGK---NVLISAPTGSGKTLAYILPALNRLQEGKDARVLIIVPTRALAEQQFERLRKFFSNTNVRVVL 77 (169)
T ss_dssp -HHHHHHHHHHHTTS---EEEEECSTTSSHHHHHHHHHHHHHHTTSSSEEEEEESSHHHHHHHHHHHHHHTTTTTSSEEE
T ss_pred CHHHHHHHHHHHcCC---CEEEECCCCCccHHHHHHHHHhhhccCCCceEEEEeeccccccccccccccccccccccccc
Confidence 489999999998543 8999999999999998877643 2 1 389999999999999999999998766667888
Q ss_pred EcCCcccc------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhc--
Q 010367 102 FTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT-- 169 (512)
Q Consensus 102 ~~~~~~~~------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~-- 169 (512)
++++.... ....++|+|+|++++...... ..+.-...+++|+||+|.+... .+..++..+
T Consensus 78 ~~~~~~~~~~~~~~~~~~~~ilv~T~~~l~~~~~~--------~~~~~~~~~~iViDE~h~l~~~~~~~~~~~i~~~~~~ 149 (169)
T PF00270_consen 78 LHGGQSISEDQREVLSNQADILVTTPEQLLDLISN--------GKINISRLSLIVIDEAHHLSDETFRAMLKSILRRLKR 149 (169)
T ss_dssp ESTTSCHHHHHHHHHHTTSSEEEEEHHHHHHHHHT--------TSSTGTTESEEEEETHHHHHHTTHHHHHHHHHHHSHT
T ss_pred ccccccccccccccccccccccccCcchhhccccc--------cccccccceeeccCcccccccccHHHHHHHHHHHhcC
Confidence 87765421 235799999999998754221 0001134899999999999874 344455544
Q ss_pred -ccceEEEEcccCC
Q 010367 170 -KSHCKLGLTATLV 182 (512)
Q Consensus 170 -~~~~~l~LTATp~ 182 (512)
...+++++||||.
T Consensus 150 ~~~~~~i~~SAT~~ 163 (169)
T PF00270_consen 150 FKNIQIILLSATLP 163 (169)
T ss_dssp TTTSEEEEEESSST
T ss_pred CCCCcEEEEeeCCC
Confidence 2357899999996
No 131
>KOG0923 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.67 E-value=2.5e-15 Score=153.37 Aligned_cols=290 Identities=17% Similarity=0.176 Sum_probs=183.3
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
..++|-.+-+.++-.+. -.||.++||+|||.+.-..+... ++++-+.-|+++.+........+-.|..-..-
T Consensus 265 PVy~ykdell~av~e~Q---VLiI~GeTGSGKTTQiPQyL~EaGytk~gk~IgcTQPRRVAAmSVAaRVA~EMgvkLG~e 341 (902)
T KOG0923|consen 265 PVYPYKDELLKAVKEHQ---VLIIVGETGSGKTTQIPQYLYEAGYTKGGKKIGCTQPRRVAAMSVAARVAEEMGVKLGHE 341 (902)
T ss_pred CchhhHHHHHHHHHhCc---EEEEEcCCCCCccccccHHHHhcccccCCceEeecCcchHHHHHHHHHHHHHhCcccccc
Confidence 45566666666665555 78899999999999977776554 23477777999988888888887665443222
Q ss_pred EEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHH---HHHHhcccce
Q 010367 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFR---KVISLTKSHC 173 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~---~~l~~~~~~~ 173 (512)
+-|+-...+.......+-++|-+||.. .++.......+.+|||||||.-.-. -|. .++..-+.-.
T Consensus 342 VGYsIRFEdcTSekTvlKYMTDGmLlR---------EfL~epdLasYSViiiDEAHERTL~TDILfgLvKDIar~RpdLK 412 (902)
T KOG0923|consen 342 VGYSIRFEDCTSEKTVLKYMTDGMLLR---------EFLSEPDLASYSVIIVDEAHERTLHTDILFGLVKDIARFRPDLK 412 (902)
T ss_pred cceEEEeccccCcceeeeeecchhHHH---------HHhccccccceeEEEeehhhhhhhhhhHHHHHHHHHHhhCCcce
Confidence 223222223334557788999999963 3444433467899999999975532 222 2222222335
Q ss_pred EEEEcccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcch
Q 010367 174 KLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (512)
Q Consensus 174 ~l~LTATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 252 (512)
.|..|||..- .+ ...+|+. .++.. .|---|+.+..-.+| -..|+.
T Consensus 413 llIsSAT~DA--ek---FS~fFDdapIF~i-------PGRRyPVdi~Yt~~P-----EAdYld----------------- 458 (902)
T KOG0923|consen 413 LLISSATMDA--EK---FSAFFDDAPIFRI-------PGRRYPVDIFYTKAP-----EADYLD----------------- 458 (902)
T ss_pred EEeeccccCH--HH---HHHhccCCcEEec-------cCcccceeeecccCC-----chhHHH-----------------
Confidence 6888999841 11 2233331 12211 122223333222222 123331
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-------CC-------CceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RK-------PMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 253 ~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-------~~-------~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
.++..+++.|...+..-+|||-...+.++...+.| +. .-||..+|++...+|++---.| .-+|+
T Consensus 459 -Aai~tVlqIH~tqp~GDILVFltGQeEIEt~~e~l~~~~~~LGski~eliv~PiYaNLPselQakIFePtP~g-aRKVV 536 (902)
T KOG0923|consen 459 -AAIVTVLQIHLTQPLGDILVFLTGQEEIETVKENLKERCRRLGSKIRELIVLPIYANLPSELQAKIFEPTPPG-ARKVV 536 (902)
T ss_pred -HHHhhheeeEeccCCccEEEEeccHHHHHHHHHHHHHHHHHhccccceEEEeeccccCChHHHHhhcCCCCCC-ceeEE
Confidence 24555566665566778999988887766665555 21 2389999999988886554444 57899
Q ss_pred EEeCCCcccccCccccEEEEe--------cC---------CCCCHHHHHHHhhcccccCCC
Q 010367 319 FLSKVGDNSIDIPEANVIIQI--------SS---------HAGSRRQEAQRLGRILRAKGK 362 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~--------~~---------~~~s~~~~~Q~~GR~~R~g~~ 362 (512)
++|+++.++|.++++..||-- .+ .+-|...-.||.||+||.|||
T Consensus 537 LATNIAETSlTIdgI~yViDpGf~K~nsynprtGmesL~v~piSKAsA~QRaGRAGRtgPG 597 (902)
T KOG0923|consen 537 LATNIAETSLTIDGIKYVIDPGFVKQNSYNPRTGMESLLVTPISKASANQRAGRAGRTGPG 597 (902)
T ss_pred EeecchhhceeecCeEEEecCccccccCcCCCcCceeEEEeeechhhhhhhccccCCCCCC
Confidence 999999999999999999841 00 011566779999999999954
No 132
>smart00487 DEXDc DEAD-like helicases superfamily.
Probab=99.67 E-value=1e-15 Score=141.51 Aligned_cols=153 Identities=25% Similarity=0.333 Sum_probs=110.4
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
...+++|+|.+++..+.... +.+++.+|||+|||.+++.++... .+++||++|+..++.||..++..++....
T Consensus 5 ~~~~~~~~Q~~~~~~~~~~~--~~~~i~~~~GsGKT~~~~~~~~~~~~~~~~~~~l~~~p~~~~~~~~~~~~~~~~~~~~ 82 (201)
T smart00487 5 GFEPLRPYQKEAIEALLSGL--RDVILAAPTGSGKTLAALLPALEALKRGKGKRVLVLVPTRELAEQWAEELKKLGPSLG 82 (201)
T ss_pred CCCCCCHHHHHHHHHHHcCC--CcEEEECCCCCchhHHHHHHHHHHhcccCCCcEEEEeCCHHHHHHHHHHHHHHhccCC
Confidence 34689999999999988762 289999999999999877776543 25799999999999999999998764333
Q ss_pred -CcEEEEcCCccc----cc-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc----hHHHHHH
Q 010367 97 -DQICRFTSDSKE----RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA----HMFRKVI 166 (512)
Q Consensus 97 -~~v~~~~~~~~~----~~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~----~~~~~~l 166 (512)
.....+.+.... .. ....+++++|++.+........ +....++++|+||+|.+.. ..+..++
T Consensus 83 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~t~~~l~~~~~~~~--------~~~~~~~~iIiDE~h~~~~~~~~~~~~~~~ 154 (201)
T smart00487 83 LKVVGLYGGDSKREQLRKLESGKTDILVTTPGRLLDLLENDL--------LELSNVDLVILDEAHRLLDGGFGDQLEKLL 154 (201)
T ss_pred eEEEEEeCCcchHHHHHHHhcCCCCEEEeChHHHHHHHHcCC--------cCHhHCCEEEEECHHHHhcCCcHHHHHHHH
Confidence 334444443311 01 2333899999998875422110 2225688999999999986 3555555
Q ss_pred Hhc-ccceEEEEcccCCCC
Q 010367 167 SLT-KSHCKLGLTATLVRE 184 (512)
Q Consensus 167 ~~~-~~~~~l~LTATp~~~ 184 (512)
..+ ...+++++||||...
T Consensus 155 ~~~~~~~~~v~~saT~~~~ 173 (201)
T smart00487 155 KLLPKNVQLLLLSATPPEE 173 (201)
T ss_pred HhCCccceEEEEecCCchh
Confidence 555 466889999999743
No 133
>cd00046 DEXDc DEAD-like helicases superfamily. A diverse family of proteins involved in ATP-dependent RNA or DNA unwinding. This domain contains the ATP-binding region.
Probab=99.66 E-value=4.7e-16 Score=135.42 Aligned_cols=128 Identities=22% Similarity=0.246 Sum_probs=96.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccc-----ccCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER-----FRGNA 114 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~-----~~~~~ 114 (512)
++++.+|||+|||.+++.++.... ++++|++|+..++.||...+..+... ...+..+.+..... .....
T Consensus 2 ~~~i~~~~G~GKT~~~~~~~~~~~~~~~~~~~lv~~p~~~l~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 80 (144)
T cd00046 2 DVLLAAPTGSGKTLAALLPILELLDSLKGGQVLVLAPTRELANQVAERLKELFGE-GIKVGYLIGGTSIKQQEKLLSGKT 80 (144)
T ss_pred CEEEECCCCCchhHHHHHHHHHHHhcccCCCEEEEcCcHHHHHHHHHHHHHHhhC-CcEEEEEecCcchhHHHHHhcCCC
Confidence 689999999999999988886653 78999999999999999999998653 44566666654332 14678
Q ss_pred eEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHH-----HHHhcccceEEEEcccC
Q 010367 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK-----VISLTKSHCKLGLTATL 181 (512)
Q Consensus 115 ~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~-----~l~~~~~~~~l~LTATp 181 (512)
+|+++|++++....... ......++++|+||+|.+....+.. ........+++++||||
T Consensus 81 ~i~i~t~~~~~~~~~~~--------~~~~~~~~~iiiDE~h~~~~~~~~~~~~~~~~~~~~~~~~i~~saTp 144 (144)
T cd00046 81 DIVVGTPGRLLDELERL--------KLSLKKLDLLILDEAHRLLNQGFGLLGLKILLKLPKDRQVLLLSATP 144 (144)
T ss_pred CEEEECcHHHHHHHHcC--------CcchhcCCEEEEeCHHHHhhcchHHHHHHHHhhCCccceEEEEeccC
Confidence 89999999886432110 0112578999999999999775443 33344566899999998
No 134
>PRK12899 secA preprotein translocase subunit SecA; Reviewed
Probab=99.66 E-value=2.4e-14 Score=154.76 Aligned_cols=131 Identities=16% Similarity=0.036 Sum_probs=91.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
+.++|||.+++..++.+. +.+..++||+|||++++.++.. .+++++||+|++.|+.|..+.+..+.......+.
T Consensus 91 ~~~tp~qvQ~I~~i~l~~---gvIAeaqTGeGKTLAf~LP~l~~aL~g~~v~IVTpTrELA~Qdae~m~~L~k~lGLsV~ 167 (970)
T PRK12899 91 WDMVPYDVQILGAIAMHK---GFITEMQTGEGKTLTAVMPLYLNALTGKPVHLVTVNDYLAQRDCEWVGSVLRWLGLTTG 167 (970)
T ss_pred CCCChHHHHHhhhhhcCC---CeEEEeCCCCChHHHHHHHHHHHHhhcCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 448999999999888774 7888999999999998877753 2357999999999999988777765443345677
Q ss_pred EEcCCcccc---ccCCCeEEEEchhhh-hccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 101 RFTSDSKER---FRGNAGVVVTTYNMV-AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 101 ~~~~~~~~~---~~~~~~Ivv~T~~~l-~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
.+.|+.... ..-.++|+|+|++.| ....+.........+.+ .+.+.++|+|||+.+.
T Consensus 168 ~i~GG~~~~eq~~~y~~DIVygTPgRLgfDyLrd~~~~~~~~~~v-qr~~~~~IIDEADsmL 228 (970)
T PRK12899 168 VLVSGSPLEKRKEIYQCDVVYGTASEFGFDYLRDNSIATRKEEQV-GRGFYFAIIDEVDSIL 228 (970)
T ss_pred EEeCCCCHHHHHHHcCCCEEEECCChhHHHHhhCCCCCcCHHHhh-cccccEEEEechhhhh
Confidence 766653311 113589999999988 32222110011111111 3577899999999875
No 135
>TIGR01407 dinG_rel DnaQ family exonuclease/DinG family helicase, putative. This model represents a family of proteins in Gram-positive bacteria. The N-terminal region of about 200 amino acids resembles the epsilon subunit of E. coli DNA polymerase III and the homologous region of the Gram-positive type DNA polymerase III alpha subunit. The epsilon subunit contains an exonuclease domain. The remainder of this protein family resembles a predicted ATP-dependent helicase, the DNA damage-inducible protein DinG of E. coli.
Probab=99.64 E-value=2.7e-14 Score=160.41 Aligned_cols=103 Identities=17% Similarity=0.195 Sum_probs=74.4
Q ss_pred HHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCccc
Q 010367 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (512)
Q Consensus 255 ~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~G 327 (512)
++..|.+... ..+.++|||+++...++.++..|. ..++..+.. ..|.+++++|+.+ +..||++|....+|
T Consensus 662 ia~~i~~l~~-~~~g~~LVlftS~~~l~~v~~~L~~~~~~~~~~~l~q~~~-~~r~~ll~~F~~~-~~~iLlgt~sf~EG 738 (850)
T TIGR01407 662 IASYIIEITA-ITSPKILVLFTSYEMLHMVYDMLNELPEFEGYEVLAQGIN-GSRAKIKKRFNNG-EKAILLGTSSFWEG 738 (850)
T ss_pred HHHHHHHHHH-hcCCCEEEEeCCHHHHHHHHHHHhhhccccCceEEecCCC-ccHHHHHHHHHhC-CCeEEEEcceeecc
Confidence 3344444444 445689999999999999998884 233443333 5789999999996 78899999999999
Q ss_pred ccCcccc--EEEEecCCCCCH-----------------------------HHHHHHhhcccccC
Q 010367 328 IDIPEAN--VIIQISSHAGSR-----------------------------RQEAQRLGRILRAK 360 (512)
Q Consensus 328 lDlp~~~--~vI~~~~~~~s~-----------------------------~~~~Q~~GR~~R~g 360 (512)
||+|+.. +||+..-|+.+| ....|.+||..|..
T Consensus 739 VD~~g~~l~~viI~~LPf~~p~dp~~~a~~~~~~~~g~~~f~~~~lP~A~~~l~Qa~GRlIRs~ 802 (850)
T TIGR01407 739 VDFPGNGLVCLVIPRLPFANPKHPLTKKYWQKLEQEGKNPFYDYVLPMAIIRLRQALGRLIRRE 802 (850)
T ss_pred cccCCCceEEEEEeCCCCCCCCCHHHHHHHHHHHHhcCCchHHhhHHHHHHHHHHhhccccccC
Confidence 9999987 444443233222 23489999999977
No 136
>KOG0924 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.64 E-value=1.1e-14 Score=148.95 Aligned_cols=289 Identities=16% Similarity=0.163 Sum_probs=182.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC----CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
-.+|+++||+|||.+....+..-+ +-+-+.-|.++.+...++.+..-++.+...-.-|+-...+.......|-.+|
T Consensus 373 vvvivgETGSGKTTQl~QyL~edGY~~~GmIGcTQPRRvAAiSVAkrVa~EM~~~lG~~VGYsIRFEdvT~~~T~IkymT 452 (1042)
T KOG0924|consen 373 VVVIVGETGSGKTTQLAQYLYEDGYADNGMIGCTQPRRVAAISVAKRVAEEMGVTLGDTVGYSIRFEDVTSEDTKIKYMT 452 (1042)
T ss_pred EEEEEecCCCCchhhhHHHHHhcccccCCeeeecCchHHHHHHHHHHHHHHhCCccccccceEEEeeecCCCceeEEEec
Confidence 788899999999999777665543 4455556999888888888887765554333333333222233456788999
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------HHHHHHHhcccceEEEEcccCCCCcchHhhhHhh
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l 194 (512)
-+.|... .+.+.. ..++.+||+||||.-.-+ -++.++..-..-..|..|||.. ...+..+
T Consensus 453 DGiLLrE--------sL~d~~-L~kYSviImDEAHERslNtDilfGllk~~larRrdlKliVtSATm~-----a~kf~nf 518 (1042)
T KOG0924|consen 453 DGILLRE--------SLKDRD-LDKYSVIIMDEAHERSLNTDILFGLLKKVLARRRDLKLIVTSATMD-----AQKFSNF 518 (1042)
T ss_pred cchHHHH--------Hhhhhh-hhheeEEEechhhhcccchHHHHHHHHHHHHhhccceEEEeecccc-----HHHHHHH
Confidence 8887642 111111 267899999999986633 2333444333346788899984 2234556
Q ss_pred hC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEE
Q 010367 195 IG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIV 273 (512)
Q Consensus 195 ~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iV 273 (512)
|| -..+.. .|-..|++......| ...|+. .++...+..|...+..-+||
T Consensus 519 Fgn~p~f~I-------pGRTyPV~~~~~k~p-----~eDYVe------------------aavkq~v~Ihl~~~~GdilI 568 (1042)
T KOG0924|consen 519 FGNCPQFTI-------PGRTYPVEIMYTKTP-----VEDYVE------------------AAVKQAVQIHLSGPPGDILI 568 (1042)
T ss_pred hCCCceeee-------cCCccceEEEeccCc-----hHHHHH------------------HHHhhheEeeccCCCCCEEE
Confidence 66 112111 233334433322222 344541 12333344444344457899
Q ss_pred EecCHHHHHHHH----HHhC-----------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE
Q 010367 274 FADNLFALTEYA----MKLR-----------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ 338 (512)
Q Consensus 274 f~~~~~~~~~l~----~~L~-----------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~ 338 (512)
|....+.++..+ ..|. +--+++.+|+.-..++++.-..+ .-++||+|.+++++|.+|++.+||-
T Consensus 569 fmtGqediE~t~~~i~~~l~ql~~~~~~~L~vlpiYSQLp~dlQ~kiFq~a~~~-vRK~IvATNIAETSLTi~gI~yVID 647 (1042)
T KOG0924|consen 569 FMTGQEDIECTCDIIKEKLEQLDSAPTTDLAVLPIYSQLPADLQAKIFQKAEGG-VRKCIVATNIAETSLTIPGIRYVID 647 (1042)
T ss_pred ecCCCcchhHHHHHHHHHHHhhhcCCCCceEEEeehhhCchhhhhhhcccCCCC-ceeEEEeccchhhceeecceEEEEe
Confidence 987665544433 3331 22389999999888887766665 7789999999999999999999985
Q ss_pred --------ecCCC---------CCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHH
Q 010367 339 --------ISSHA---------GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 339 --------~~~~~---------~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
|.+.. -|..+--||.||+||.|+ +..|++.++++....+.
T Consensus 648 ~Gy~K~kvyn~~~G~D~L~~~pIS~AnA~QRaGRAGRt~p--------------G~cYRlYTe~ay~~eml 704 (1042)
T KOG0924|consen 648 TGYCKLKVYNPRIGMDALQIVPISQANADQRAGRAGRTGP--------------GTCYRLYTEDAYKNEML 704 (1042)
T ss_pred cCceeeeecccccccceeEEEechhccchhhccccCCCCC--------------cceeeehhhhHHHhhcc
Confidence 11111 166677999999999995 56788888877665444
No 137
>KOG0949 consensus Predicted helicase, DEAD-box superfamily [General function prediction only]
Probab=99.64 E-value=2.9e-14 Score=151.05 Aligned_cols=153 Identities=18% Similarity=0.198 Sum_probs=103.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCC-CC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~-~~ 97 (512)
+.+-.||.+-+...=.+. +++|++||.+|||++...++... .+-|++++|+++|+.|....+...++.+ ..
T Consensus 510 F~Pd~WQ~elLDsvDr~e---SavIVAPTSaGKTfisfY~iEKVLResD~~VVIyvaPtKaLVnQvsa~VyaRF~~~t~~ 586 (1330)
T KOG0949|consen 510 FCPDEWQRELLDSVDRNE---SAVIVAPTSAGKTFISFYAIEKVLRESDSDVVIYVAPTKALVNQVSANVYARFDTKTFL 586 (1330)
T ss_pred cCCcHHHHHHhhhhhccc---ceEEEeeccCCceeccHHHHHHHHhhcCCCEEEEecchHHHhhhhhHHHHHhhccCccc
Confidence 566779999988654444 99999999999999988888654 3578999999999999998877654221 11
Q ss_pred cEEEEcCCccccc---cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcc
Q 010367 98 QICRFTSDSKERF---RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK 170 (512)
Q Consensus 98 ~v~~~~~~~~~~~---~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~ 170 (512)
.....-|.....+ +-.+.|+||-++.+....-.... ...+. .+..++|+||+|.+++. -+..++..++
T Consensus 587 rg~sl~g~ltqEYsinp~nCQVLITvPecleslLlspp~---~q~~c--erIRyiIfDEVH~iG~~ed~l~~Eqll~li~ 661 (1330)
T KOG0949|consen 587 RGVSLLGDLTQEYSINPWNCQVLITVPECLESLLLSPPH---HQKFC--ERIRYIIFDEVHLIGNEEDGLLWEQLLLLIP 661 (1330)
T ss_pred cchhhHhhhhHHhcCCchhceEEEEchHHHHHHhcCchh---hhhhh--hcceEEEechhhhccccccchHHHHHHHhcC
Confidence 1111222211111 24689999999977654221000 11222 45679999999999975 4555555554
Q ss_pred cceEEEEcccCCCCc
Q 010367 171 SHCKLGLTATLVRED 185 (512)
Q Consensus 171 ~~~~l~LTATp~~~~ 185 (512)
.+ .|+||||..+..
T Consensus 662 CP-~L~LSATigN~~ 675 (1330)
T KOG0949|consen 662 CP-FLVLSATIGNPN 675 (1330)
T ss_pred CC-eeEEecccCCHH
Confidence 44 699999987543
No 138
>KOG0926 consensus DEAH-box RNA helicase [RNA processing and modification; Translation, ribosomal structure and biogenesis]
Probab=99.63 E-value=1.7e-14 Score=149.85 Aligned_cols=138 Identities=15% Similarity=0.154 Sum_probs=92.7
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC---------CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE--
Q 010367 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK---------KSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC-- 100 (512)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~---------~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~-- 100 (512)
+.++++..|. -.|||++||+|||.+.-.++...+ +-+-|.-|+++.+--+.+....-++.-+..|+
T Consensus 263 ~IMEaIn~n~---vvIIcGeTGsGKTTQvPQFLYEAGf~s~~~~~~gmIGITqPRRVAaiamAkRVa~EL~~~~~eVsYq 339 (1172)
T KOG0926|consen 263 RIMEAINENP---VVIICGETGSGKTTQVPQFLYEAGFASEQSSSPGMIGITQPRRVAAIAMAKRVAFELGVLGSEVSYQ 339 (1172)
T ss_pred HHHHHhhcCC---eEEEecCCCCCccccchHHHHHcccCCccCCCCCeeeecCchHHHHHHHHHHHHHHhccCccceeEE
Confidence 3344445554 789999999999999877776653 23666679998877777777665555444553
Q ss_pred -EEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------HHHHHHH------
Q 010367 101 -RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVIS------ 167 (512)
Q Consensus 101 -~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~~~~~l~------ 167 (512)
+|.|... ....|.++|-+.|.. .+...+....+.+||+||||.-.-. ...+++.
T Consensus 340 IRfd~ti~----e~T~IkFMTDGVLLr---------Ei~~DflL~kYSvIIlDEAHERSvnTDILiGmLSRiV~LR~k~~ 406 (1172)
T KOG0926|consen 340 IRFDGTIG----EDTSIKFMTDGVLLR---------EIENDFLLTKYSVIILDEAHERSVNTDILIGMLSRIVPLRQKYY 406 (1172)
T ss_pred EEeccccC----CCceeEEecchHHHH---------HHHHhHhhhhceeEEechhhhccchHHHHHHHHHHHHHHHHHHh
Confidence 3444433 457899999999864 4445555689999999999986522 2222221
Q ss_pred ----hcccceEEEEcccCCCCc
Q 010367 168 ----LTKSHCKLGLTATLVRED 185 (512)
Q Consensus 168 ----~~~~~~~l~LTATp~~~~ 185 (512)
.++.-..|.||||..-.|
T Consensus 407 ke~~~~kpLKLIIMSATLRVsD 428 (1172)
T KOG0926|consen 407 KEQCQIKPLKLIIMSATLRVSD 428 (1172)
T ss_pred hhhcccCceeEEEEeeeEEecc
Confidence 122346799999997544
No 139
>cd00079 HELICc Helicase superfamily c-terminal domain; associated with DEXDc-, DEAD-, and DEAH-box proteins, yeast initiation factor 4A, Ski2p, and Hepatitis C virus NS3 helicases; this domain is found in a wide variety of helicases and helicase related proteins; may not be an autonomously folding unit, but an integral part of the helicase; 4 helicase superfamilies at present according to the organization of their signature motifs; all helicases share the ability to unwind nucleic acid duplexes with a distinct directional polarity; they utilize the free energy from nucleoside triphosphate hydrolysis to fuel their translocation along DNA, unwinding the duplex in the process
Probab=99.63 E-value=2.4e-15 Score=129.91 Aligned_cols=108 Identities=29% Similarity=0.399 Sum_probs=94.1
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.|...+..++..+. ..+.++||||++...++.+++.|. ...+||+++..+|..+++.|+.+ ...+|++|.+++
T Consensus 12 ~k~~~i~~~i~~~~-~~~~~~lvf~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~f~~~-~~~ili~t~~~~ 89 (131)
T cd00079 12 EKLEALLELLKEHL-KKGGKVLIFCPSKKMLDELAELLRKPGIKVAALHGDGSQEEREEVLKDFREG-EIVVLVATDVIA 89 (131)
T ss_pred HHHHHHHHHHHhcc-cCCCcEEEEeCcHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHHHcC-CCcEEEEcChhh
Confidence 35555566665543 367899999999999999999984 34699999999999999999997 799999999999
Q ss_pred ccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 326 ~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|+|+|.+++||+++.++ +...+.|++||++|.|+
T Consensus 90 ~G~d~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~~~ 124 (131)
T cd00079 90 RGIDLPNVSVVINYDLPW-SPSSYLQRIGRAGRAGQ 124 (131)
T ss_pred cCcChhhCCEEEEeCCCC-CHHHheecccccccCCC
Confidence 999999999999998877 99999999999999994
No 140
>PRK12900 secA preprotein translocase subunit SecA; Reviewed
Probab=99.62 E-value=1.9e-14 Score=155.85 Aligned_cols=106 Identities=18% Similarity=0.208 Sum_probs=87.9
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---CC--CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---RK--PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~~--~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.|+.++...+.... ..|.++||||+++...+.++..| ++ .++|+ .+.+|+..+..|..+ ...|+|+|++++
T Consensus 582 eK~~Ali~~I~~~~-~~grpVLIft~Sve~sE~Ls~~L~~~gI~h~vLna--kq~~REa~Iia~AG~-~g~VtIATNMAG 657 (1025)
T PRK12900 582 EKYNAIVLKVEELQ-KKGQPVLVGTASVEVSETLSRMLRAKRIAHNVLNA--KQHDREAEIVAEAGQ-KGAVTIATNMAG 657 (1025)
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEEeCcHHHHHHHHHHHHHcCCCceeecC--CHHHhHHHHHHhcCC-CCeEEEeccCcC
Confidence 46777777775544 56899999999999999999999 33 35776 688999999999997 899999999999
Q ss_pred ccccCc---ccc-----EEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 326 NSIDIP---EAN-----VIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 326 ~GlDlp---~~~-----~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|+|++ .+. +||....|. |.+.+.|+.||+||.|.
T Consensus 658 RGtDIkl~~~V~~vGGL~VIgterhe-s~Rid~Ql~GRtGRqGd 700 (1025)
T PRK12900 658 RGTDIKLGEGVRELGGLFILGSERHE-SRRIDRQLRGRAGRQGD 700 (1025)
T ss_pred CCCCcCCccchhhhCCceeeCCCCCc-hHHHHHHHhhhhhcCCC
Confidence 999999 443 346666665 99999999999999885
No 141
>COG1110 Reverse gyrase [DNA replication, recombination, and repair]
Probab=99.60 E-value=1.1e-13 Score=147.99 Aligned_cols=263 Identities=17% Similarity=0.221 Sum_probs=172.9
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH---HhcCCCEEEEEcChhhHHHHHHHHHHhhCCCC-Cc
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQD-DQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~-~~ 98 (512)
.+.|+..|+--...++.+. +.-+.+|||.|||.-++... +..++++++|+||..|+.|..+.+.++..-.. ..
T Consensus 80 G~~~ws~QR~WakR~~rg~---SFaiiAPTGvGKTTfg~~~sl~~a~kgkr~yii~PT~~Lv~Q~~~kl~~~~e~~~~~~ 156 (1187)
T COG1110 80 GFRPWSAQRVWAKRLVRGK---SFAIIAPTGVGKTTFGLLMSLYLAKKGKRVYIIVPTTTLVRQVYERLKKFAEDAGSLD 156 (1187)
T ss_pred CCCchHHHHHHHHHHHcCC---ceEEEcCCCCchhHHHHHHHHHHHhcCCeEEEEecCHHHHHHHHHHHHHHHhhcCCcc
Confidence 4688999999999988886 99999999999998766555 34468999999999999999999998862111 22
Q ss_pred EEE-EcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc--hHH----
Q 010367 99 ICR-FTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMF---- 162 (512)
Q Consensus 99 v~~-~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~--~~~---- 162 (512)
+.+ ||+..+.+ ..++.+|+|||-+.|.+. ++.|...+|++|++|.++.+.- ...
T Consensus 157 ~~~~yh~~l~~~ekee~le~i~~gdfdIlitTs~FL~k~----------~e~L~~~kFdfifVDDVDA~LkaskNvDriL 226 (1187)
T COG1110 157 VLVVYHSALPTKEKEEALERIESGDFDILITTSQFLSKR----------FEELSKLKFDFIFVDDVDAILKASKNVDRLL 226 (1187)
T ss_pred eeeeeccccchHHHHHHHHHHhcCCccEEEEeHHHHHhh----------HHHhcccCCCEEEEccHHHHHhccccHHHHH
Confidence 222 77763321 247899999999988754 6677667999999999997641 100
Q ss_pred --------------------------------HHHHH---------hcccceEEEEcccCCCCcchHhhhHhhhCCceee
Q 010367 163 --------------------------------RKVIS---------LTKSHCKLGLTATLVREDERITDLNFLIGPKLYE 201 (512)
Q Consensus 163 --------------------------------~~~l~---------~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~ 201 (512)
++.+. ..+..+.+..|||-.........+..++|=.+-.
T Consensus 227 ~LlGf~eE~i~~a~~~~~lr~~~~~~~~~~~~~e~~~~~e~~~~~~r~k~g~LvvsSATg~~rg~R~~LfReLlgFevG~ 306 (1187)
T COG1110 227 RLLGFSEEVIESAYELIKLRRKLYGEKRAERVREELREVEREREKKRRKLGILVVSSATGKPRGSRLKLFRELLGFEVGS 306 (1187)
T ss_pred HHcCCCHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHhccCCceEEEeeccCCCCCchHHHHHHHhCCccCc
Confidence 01111 1122356777888765554443333333311100
Q ss_pred ecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecC---H
Q 010367 202 ANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADN---L 278 (512)
Q Consensus 202 ~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~---~ 278 (512)
. .-.+.++ ..++.. + .-...+..|++.+ |.-.|||++. +
T Consensus 307 ~-------~~~LRNI--vD~y~~------------------------~-~~~e~~~elvk~l----G~GgLIfV~~d~G~ 348 (1187)
T COG1110 307 G-------GEGLRNI--VDIYVE------------------------S-ESLEKVVELVKKL----GDGGLIFVPIDYGR 348 (1187)
T ss_pred c-------chhhhhe--eeeecc------------------------C-ccHHHHHHHHHHh----CCCeEEEEEcHHhH
Confidence 0 0011111 111111 0 1113344555555 4557999999 8
Q ss_pred HHHHHHHHHhCC-----CceeCCCCHHHHHHHHHHhhCCCCccEEEE----eCCCcccccCcccc-EEEEecCC
Q 010367 279 FALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPEAN-VIIQISSH 342 (512)
Q Consensus 279 ~~~~~l~~~L~~-----~~i~g~~~~~eR~~il~~F~~~~~~~vlv~----t~~~~~GlDlp~~~-~vI~~~~~ 342 (512)
+.+++++++|.- ..+|. ...+.++.|..| ++++||. ..++-+|||+|..- .+|++..|
T Consensus 349 e~aeel~e~Lr~~Gi~a~~~~a-----~~~~~le~F~~G-eidvLVGvAsyYG~lVRGlDLP~rirYaIF~GvP 416 (1187)
T COG1110 349 EKAEELAEYLRSHGINAELIHA-----EKEEALEDFEEG-EVDVLVGVASYYGVLVRGLDLPHRIRYAVFYGVP 416 (1187)
T ss_pred HHHHHHHHHHHhcCceEEEeec-----cchhhhhhhccC-ceeEEEEecccccceeecCCchhheeEEEEecCC
Confidence 899999999932 23444 336789999998 9999997 37788999999875 77776444
No 142
>KOG0383 consensus Predicted helicase [General function prediction only]
Probab=99.59 E-value=3.1e-16 Score=165.45 Aligned_cols=289 Identities=17% Similarity=0.281 Sum_probs=186.9
Q ss_pred CCCCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 23 HAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
...|-+||.++++++... .....+|+++++|.|||.+++.+...+ ..+.|+++|..+ +-.|..+|..|. +
T Consensus 293 ~g~L~~~qleGln~L~~~ws~~~~~ilADEmgLgktVqsi~fl~sl~~~~~~~~P~Lv~ap~sT-~~nwe~e~~~wa--p 369 (696)
T KOG0383|consen 293 GGTLHPYQLEGLNWLRISWSPGVDAILADEMGLGKTVQSIVFLYSLPKEIHSPGPPLVVAPLST-IVNWEREFELWA--P 369 (696)
T ss_pred CccccccchhhhhhhhcccccCCCcccchhhcCCceeeEEEEEeecccccCCCCCceeeccCcc-ccCCCCchhccC--C
Confidence 367889999999976322 223589999999999999987776544 358999999998 778999999994 3
Q ss_pred CCcEEEEcCCcccc---------------------------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccE
Q 010367 96 DDQICRFTSDSKER---------------------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGL 148 (512)
Q Consensus 96 ~~~v~~~~~~~~~~---------------------------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~l 148 (512)
...|..+.|..+.. -.-..++..++|++.... . ..+....|++
T Consensus 370 ~~~vv~~~G~~k~r~iirepe~s~ed~~~~~~~~i~~~~~~s~~k~~vl~~s~~~~~~~-------~---~il~~v~w~~ 439 (696)
T KOG0383|consen 370 SFYVVPYPGTAKSRAIIREPEFSFEDSSIKSSPKISEMKTESSAKFHVLLPSYETIEID-------Q---SILFSVQWGL 439 (696)
T ss_pred CcccccCCCCccchhhhhcccccccccccccCCccccccchhhcccccCCCchhhcccC-------H---HHHhhhhcce
Confidence 34455555533211 012355667777766543 1 2233468999
Q ss_pred EEEcCCCCCCch--HHHHHHHhcccceEEEEcccCCCCcchH-hhhHhhhCCce--------------------------
Q 010367 149 LLMDEVHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGPKL-------------------------- 199 (512)
Q Consensus 149 vIiDEaH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l~~l~gp~~-------------------------- 199 (512)
+|+||+|+++++ .+.+.+......++++||+||.+++-.+ ..+..+..|..
T Consensus 440 livde~~rlkn~~s~~f~~l~~~~~~~~~lltgtPlqnn~~el~~ll~flt~~~~~~~~~f~e~~~d~~~~~~~~~l~~l 519 (696)
T KOG0383|consen 440 LIVDEAHRLKNKQSKRFRVLTAYPIDSKLLLTGTPLQNNLEELFNLLNFLTPGRFNSLEWFLEEFHDISCEEQIKKLHLL 519 (696)
T ss_pred eEeechhhcccchhhhhhhccccccchhhhccCCcchhhhHHhhhcccccCcccccchhhhhhhcchhhHHHHHHhhccc
Confidence 999999999987 5556677777889999999999865332 12222222222
Q ss_pred -----eeecHHHHHhCCCcccceeEEEEcCCC---HHHHHHHHHhhch------------------HHHH----------
Q 010367 200 -----YEANWLDLVKGGFIANVQCAEVWCPMT---KEFFSEYLKKENS------------------KKKQ---------- 243 (512)
Q Consensus 200 -----~~~~~~~l~~~~~l~~~~~~~~~~~~~---~~~~~~~l~~~~~------------------~~~~---------- 243 (512)
.+.-..|..+. ........+...++ ...|+..+...-. ++..
T Consensus 520 ~~p~~lrr~k~d~l~~--~P~Kte~i~~~~~~~~Q~~~yk~~~t~n~~~l~~~~~~~s~~n~~mel~K~~~hpy~~~~~e 597 (696)
T KOG0383|consen 520 LCPHMLRRLKLDVLKP--MPLKTELIGRVELSPCQKKYYKKILTRNWQGLLAGVHQYSLLNIVMELRKQCNHPYLSPLEE 597 (696)
T ss_pred cCchhhhhhhhhhccC--CCccceeEEEEecCHHHHHHHHHHHcCChHHHhhcchhHHHHHHHHHHHHhhcCcccCcccc
Confidence 11111112111 11111222223333 2233322211100 0000
Q ss_pred ----------HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC----CCceeCCCCHHHHHHHHHHh
Q 010367 244 ----------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPMIYGATSHVERTKILQAF 309 (512)
Q Consensus 244 ----------~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~----~~~i~g~~~~~eR~~il~~F 309 (512)
.-......|+..+...++.+. ..|+++++|++.+..++.+..++. .+.++|.....+|+..+++|
T Consensus 598 ~~~~~~~~~~~~l~k~~~k~~~l~~~~~~l~-~~ghrvl~~~q~~~~ldlled~~~~~~~~~r~dG~~~~~~rq~ai~~~ 676 (696)
T KOG0383|consen 598 PLEENGEYLGSALIKASGKLTLLLKMLKKLK-SSGHRVLIFSQMIHMLDLLEDYLTYEGKYERIDGPITGPERQAAIDRF 676 (696)
T ss_pred ccccchHHHHHHHHHHHHHHHHHHHHHHHHH-hcchhhHHHHHHHHHHHHhHHHHhccCcceeccCCccchhhhhhcccc
Confidence 001113467778888887777 899999999999999999999984 45799999999999999999
Q ss_pred hCCC--CccEEEEeCCCccc
Q 010367 310 KCSR--DLNTIFLSKVGDNS 327 (512)
Q Consensus 310 ~~~~--~~~vlv~t~~~~~G 327 (512)
+..+ ..-+|.+|+++|.|
T Consensus 677 n~~~~~~~cfllstra~g~g 696 (696)
T KOG0383|consen 677 NAPGSNQFCFLLSTRAGGLG 696 (696)
T ss_pred CCCCccceEEEeecccccCC
Confidence 9653 34456679999877
No 143
>KOG0349 consensus Putative DEAD-box RNA helicase DDX1 [RNA processing and modification]
Probab=99.59 E-value=4.4e-15 Score=144.66 Aligned_cols=284 Identities=17% Similarity=0.205 Sum_probs=171.0
Q ss_pred CEEEEEcChhhHHHHHH---HHHHhhCCCCCc-EEEEcCCcc----ccccCCCeEEEEchhhhhccCCCchhHHHHHHHH
Q 010367 70 SCLCLATNAVSVDQWAF---QFKLWSTIQDDQ-ICRFTSDSK----ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI 141 (512)
Q Consensus 70 ~~Lvl~P~~~L~~Qw~~---~~~~~~~~~~~~-v~~~~~~~~----~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l 141 (512)
..+|+-|+++|++|... +|+.++..|..+ ...+.|-.+ ..+....+|+|.|+..+...... ..+
T Consensus 288 ~avivepsrelaEqt~N~i~~Fk~h~~np~~r~lLmiggv~~r~Q~~ql~~g~~ivvGtpgRl~~~is~--------g~~ 359 (725)
T KOG0349|consen 288 EAVIVEPSRELAEQTHNQIEEFKMHTSNPEVRSLLMIGGVLKRTQCKQLKDGTHIVVGTPGRLLQPISK--------GLV 359 (725)
T ss_pred ceeEecCcHHHHHHHHhhHHHHHhhcCChhhhhhhhhhhHHhHHHHHHhhcCceeeecCchhhhhhhhc--------cce
Confidence 58999999999999998 555554444322 223333222 22456789999999877533110 011
Q ss_pred hcCCccEEEEcCCCCCCchHHHHHHHhcc-------c----ceEEEEcccCCCCcchHhhhHhhhCCce-eeecHHHHHh
Q 010367 142 RNREWGLLLMDEVHVVPAHMFRKVISLTK-------S----HCKLGLTATLVREDERITDLNFLIGPKL-YEANWLDLVK 209 (512)
Q Consensus 142 ~~~~~~lvIiDEaH~~~~~~~~~~l~~~~-------~----~~~l~LTATp~~~~~~~~~l~~l~gp~~-~~~~~~~l~~ 209 (512)
......++++||++.+....|...+..+. + .+.+..|||..--+-+ -++..+ .=..|.++..
T Consensus 360 ~lt~crFlvlDead~lL~qgy~d~I~r~h~qip~~tsdg~rlq~~vCsatlh~feVk------k~~ervmhfptwVdLkg 433 (725)
T KOG0349|consen 360 TLTHCRFLVLDEADLLLGQGYDDKIYRFHGQIPHMTSDGFRLQSPVCSATLHIFEVK------KVGERVMHFPTWVDLKG 433 (725)
T ss_pred eeeeeEEEEecchhhhhhcccHHHHHHHhccchhhhcCCcccccceeeeEEeEEEee------ehhhhhccCceeEeccc
Confidence 12456789999999998765444433321 1 2456778887532211 000000 0123333332
Q ss_pred CCCcccceeEEEEcCCCHH---H---HHHHHHhhchHHHHH--HhhcCcchHHH---------HHHHHHHhhhcCCCeEE
Q 010367 210 GGFIANVQCAEVWCPMTKE---F---FSEYLKKENSKKKQA--LYVMNPNKFRA---------CEFLIRFHEQQRGDKII 272 (512)
Q Consensus 210 ~~~l~~~~~~~~~~~~~~~---~---~~~~l~~~~~~~~~~--~~~~~~~k~~~---------l~~ll~~~~~~~g~k~i 272 (512)
...+ |-..+.+.+...+. . .+.++..+....+.. ....+|..... +...++.| .-+++|
T Consensus 434 eD~v-petvHhvv~lv~p~~d~sw~~lr~~i~td~vh~kdn~~pg~~Spe~~s~a~kilkgEy~v~ai~~h---~mdkai 509 (725)
T KOG0349|consen 434 EDLV-PETVHHVVKLVCPSVDGSWCDLRQFIETDKVHTKDNLLPGQVSPENPSSATKILKGEYGVVAIRRH---AMDKAI 509 (725)
T ss_pred cccc-chhhccceeecCCccCccHHHHhhhhccCCcccccccccccCCCCChhhhhHHhcCchhhhhhhhh---ccCceE
Confidence 2222 22222222222111 1 122222221111111 11112222221 22222333 368999
Q ss_pred EEecCHHHHHHHHHHhC--------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCC
Q 010367 273 VFADNLFALTEYAMKLR--------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAG 344 (512)
Q Consensus 273 Vf~~~~~~~~~l~~~L~--------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~ 344 (512)
+||.++..++.+.++++ +..+||+..+.||.+-++.|+.. ++++||||+++++|+|+..+-.+|...-|.
T Consensus 510 ifcrtk~dcDnLer~~~qkgg~~~scvclhgDrkP~Erk~nle~Fkk~-dvkflictdvaargldi~g~p~~invtlpd- 587 (725)
T KOG0349|consen 510 IFCRTKQDCDNLERMMNQKGGKHYSCVCLHGDRKPDERKANLESFKKF-DVKFLICTDVAARGLDITGLPFMINVTLPD- 587 (725)
T ss_pred EEEeccccchHHHHHHHHcCCccceeEEEecCCChhHHHHHHHhhhhc-CeEEEEEehhhhccccccCCceEEEEecCc-
Confidence 99999999999999983 34699999999999999999997 999999999999999999999999986655
Q ss_pred CHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 345 SRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 345 s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
....|++|+||+||+.+ -....+||..-.
T Consensus 588 ~k~nyvhrigrvgraer-------------mglaislvat~~ 616 (725)
T KOG0349|consen 588 DKTNYVHRIGRVGRAER-------------MGLAISLVATVP 616 (725)
T ss_pred ccchhhhhhhccchhhh-------------cceeEEEeeccc
Confidence 88899999999999764 345667776443
No 144
>PRK12326 preprotein translocase subunit SecA; Reviewed
Probab=99.57 E-value=1.8e-13 Score=144.51 Aligned_cols=129 Identities=16% Similarity=0.155 Sum_probs=91.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
..+++-|.-+.-.++.+ -|.-+.||.|||+++..++. ..++.|-|++|+..|+.|-.+.+..++..-...|+
T Consensus 77 ~r~ydvQlig~l~Ll~G-----~VaEM~TGEGKTLvA~l~a~l~AL~G~~VhvvT~NdyLA~RDae~m~~ly~~LGLsvg 151 (764)
T PRK12326 77 LRPFDVQLLGALRLLAG-----DVIEMATGEGKTLAGAIAAAGYALQGRRVHVITVNDYLARRDAEWMGPLYEALGLTVG 151 (764)
T ss_pred CCcchHHHHHHHHHhCC-----CcccccCCCCHHHHHHHHHHHHHHcCCCeEEEcCCHHHHHHHHHHHHHHHHhcCCEEE
Confidence 34555677777766643 38899999999999876664 34789999999999999877666665544445788
Q ss_pred EEcCCcccc---ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 101 ~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
.+.++.... ..-.++|+.+|-..+....-|.+..... +....+.+.++||||++.+.
T Consensus 152 ~i~~~~~~~err~aY~~DItYgTn~e~gFDyLRDnm~~~~-~~~v~R~~~faIVDEvDSiL 211 (764)
T PRK12326 152 WITEESTPEERRAAYACDVTYASVNEIGFDVLRDQLVTDV-ADLVSPNPDVAIIDEADSVL 211 (764)
T ss_pred EECCCCCHHHHHHHHcCCCEEcCCcccccccchhhhccCh-HhhcCCccceeeecchhhhe
Confidence 877764421 1246889999998888766655433222 22224678999999999765
No 145
>PF00271 Helicase_C: Helicase conserved C-terminal domain; InterPro: IPR001650 The domain, which defines this group of proteins is found in a wide variety of helicases and helicase related proteins. It may be that this is not an autonomously folding unit, but an integral part of the helicase. The eukaryotic translation initiation factor 4A (eIF4A) is a member of the DEA(D/H)-box RNA helicase family This is a diverse group of proteins that couples an ATPase activity to RNA binding and unwinding. The structure of the carboxyl-terminal domain of eIF4A has been determined to 1.75 A resolution; it has a parallel alpha-beta topology that superimposes, with minor variations, on the structures and conserved motifs of the equivalent domain in other, distantly related helicases [].; GO: 0003676 nucleic acid binding, 0004386 helicase activity, 0005524 ATP binding; PDB: 2Z83_A 2JGN_C 2I4I_A 2BMF_A 2BHR_B 1WP9_E 2WAX_C 2WAY_C 3JUX_A 3DIN_B ....
Probab=99.55 E-value=5.5e-15 Score=115.80 Aligned_cols=69 Identities=28% Similarity=0.435 Sum_probs=65.4
Q ss_pred CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 290 ~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
+..+||++++.+|..+++.|+.+ ..++||+|+++++|+|+|.+++||+++.++ |+..|.|++||++|.|
T Consensus 10 ~~~i~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gid~~~~~~vi~~~~~~-~~~~~~Q~~GR~~R~g 78 (78)
T PF00271_consen 10 VAIIHGDMSQKERQEILKKFNSG-EIRVLIATDILGEGIDLPDASHVIFYDPPW-SPEEYIQRIGRAGRIG 78 (78)
T ss_dssp EEEESTTSHHHHHHHHHHHHHTT-SSSEEEESCGGTTSSTSTTESEEEESSSES-SHHHHHHHHTTSSTTT
T ss_pred EEEEECCCCHHHHHHHHHHhhcc-CceEEEeeccccccccccccccccccccCC-CHHHHHHHhhcCCCCC
Confidence 45799999999999999999997 889999999999999999999999998877 9999999999999986
No 146
>KOG0920 consensus ATP-dependent RNA helicase A [RNA processing and modification]
Probab=99.55 E-value=5.1e-13 Score=144.93 Aligned_cols=315 Identities=16% Similarity=0.147 Sum_probs=190.6
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
....++++.++.+-++. -.+|+++||+|||.+...++... ..++++.-|++-.+--..+++..--+-+...
T Consensus 173 Pa~~~r~~Il~~i~~~q---VvvIsGeTGcGKTTQvpQfiLd~~~~~~~~~~IicTQPRRIsAIsvAeRVa~ER~~~~g~ 249 (924)
T KOG0920|consen 173 PAYKMRDTILDAIEENQ---VVVISGETGCGKTTQVPQFILDEAIESGAACNIICTQPRRISAISVAERVAKERGESLGE 249 (924)
T ss_pred ccHHHHHHHHHHHHhCc---eEEEeCCCCCCchhhhhHHHHHHHHhcCCCCeEEecCCchHHHHHHHHHHHHHhccccCC
Confidence 34556677777666665 88999999999999987777543 3466777798766665555555422222223
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-H-----HHHHHHhcccc
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-M-----FRKVISLTKSH 172 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~-----~~~~l~~~~~~ 172 (512)
..-|.-...........+.++|.+.|.....- ... ......+|+||+|.-.-+ . .+.++..-+.-
T Consensus 250 ~VGYqvrl~~~~s~~t~L~fcTtGvLLr~L~~-------~~~--l~~vthiivDEVHER~i~~DflLi~lk~lL~~~p~L 320 (924)
T KOG0920|consen 250 EVGYQVRLESKRSRETRLLFCTTGVLLRRLQS-------DPT--LSGVTHIIVDEVHERSINTDFLLILLKDLLPRNPDL 320 (924)
T ss_pred eeeEEEeeecccCCceeEEEecHHHHHHHhcc-------Ccc--cccCceeeeeeEEEccCCcccHHHHHHHHhhhCCCc
Confidence 33332222222234488999999988643210 111 256789999999986533 1 22233333344
Q ss_pred eEEEEcccCCCCcchHhhhHhhhC--CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhch-----HHH---
Q 010367 173 CKLGLTATLVREDERITDLNFLIG--PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS-----KKK--- 242 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~g--p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-----~~~--- 242 (512)
++++||||.. .. ....+|| |.+.. .|.. .|...-++++.+..... ...
T Consensus 321 kvILMSAT~d--ae---~fs~YF~~~pvi~i--------~grt---------fpV~~~fLEDil~~~~~~~~~~~~~~~~ 378 (924)
T KOG0920|consen 321 KVILMSATLD--AE---LFSDYFGGCPVITI--------PGRT---------FPVKEYFLEDILSKTGYVSEDDSARSGP 378 (924)
T ss_pred eEEEeeeecc--hH---HHHHHhCCCceEee--------cCCC---------cchHHHHHHHHHHHhccccccccccccc
Confidence 7899999995 11 1233443 22111 0111 11111111111100000 000
Q ss_pred -------HHHhhcCc-chHHHHHHHHHHhhh-cCCCeEEEEecCHHHHHHHHHHhCC------------CceeCCCCHHH
Q 010367 243 -------QALYVMNP-NKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLRK------------PMIYGATSHVE 301 (512)
Q Consensus 243 -------~~~~~~~~-~k~~~l~~ll~~~~~-~~g~k~iVf~~~~~~~~~l~~~L~~------------~~i~g~~~~~e 301 (512)
..+....+ -....+..++.+... .....+|||.+....+..+...|.. ..+|+.++..+
T Consensus 379 ~~~~~~~~~~~~~~~~id~~Li~~li~~I~~~~~~GaILVFLPG~~eI~~~~~~L~~~~~f~~~~~~~ilplHs~~~s~e 458 (924)
T KOG0920|consen 379 ERSQLRLARLKLWEPEIDYDLIEDLIEYIDEREFEGAILVFLPGWEEILQLKELLEVNLPFADSLKFAILPLHSSIPSEE 458 (924)
T ss_pred ccCccccccchhccccccHHHHHHHHHhcccCCCCceEEEEcCCHHHHHHHHHHhhhccccccccceEEEeccccCChHH
Confidence 00111111 245667777765542 2345899999999999999998831 13799999999
Q ss_pred HHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE--------e---------cCCCCCHHHHHHHhhcccccCCCcc
Q 010367 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ--------I---------SSHAGSRRQEAQRLGRILRAKGKLE 364 (512)
Q Consensus 302 R~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~--------~---------~~~~~s~~~~~Q~~GR~~R~g~~~~ 364 (512)
...++..--.+ .-+||++|.+++++|.++++-.||- | ...|-|...-.||.||+||..+
T Consensus 459 Q~~VF~~pp~g-~RKIIlaTNIAETSITIdDVvyVIDsG~~Ke~~yD~~~~~s~l~~~wvSkAna~QR~GRAGRv~~--- 534 (924)
T KOG0920|consen 459 QQAVFKRPPKG-TRKIILATNIAETSITIDDVVYVIDSGLVKEKSYDPERKVSCLLLSWVSKANAKQRRGRAGRVRP--- 534 (924)
T ss_pred HHHhcCCCCCC-cchhhhhhhhHhhcccccCeEEEEecCeeeeeeecccCCcchhheeeccccchHHhcccccCccC---
Confidence 99997776665 6789999999999999999998885 1 2223477788999999999883
Q ss_pred ccccCCCCceeEEEEEEEeCCcHh
Q 010367 365 DRMAGGKEEYNAFFYSLVSTDTQE 388 (512)
Q Consensus 365 ~~~~~~~~~~~~~~y~lv~~~t~e 388 (512)
+..|.+.+..-.+
T Consensus 535 -----------G~cy~L~~~~~~~ 547 (924)
T KOG0920|consen 535 -----------GICYHLYTRSRYE 547 (924)
T ss_pred -----------CeeEEeechhhhh
Confidence 5567777655433
No 147
>PRK13103 secA preprotein translocase subunit SecA; Reviewed
Probab=99.51 E-value=3.6e-12 Score=137.99 Aligned_cols=129 Identities=19% Similarity=0.139 Sum_probs=87.3
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEE
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~ 102 (512)
+|||=.+.+-.+.-+. +-|.-+.||.|||+++..++. ..++.|-|++|+..|+.|-...+..++..-...|+.+
T Consensus 81 m~~ydVQliGg~~Lh~---G~iaEM~TGEGKTLvA~l~a~l~al~G~~VhvvT~ndyLA~RD~e~m~~l~~~lGl~v~~i 157 (913)
T PRK13103 81 MRHFDVQLIGGMTLHE---GKIAEMRTGEGKTLVGTLAVYLNALSGKGVHVVTVNDYLARRDANWMRPLYEFLGLSVGIV 157 (913)
T ss_pred CCcchhHHHhhhHhcc---CccccccCCCCChHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHhcccCCEEEEE
Confidence 4444333344333232 458889999999999876663 3478999999999999998888877765555678888
Q ss_pred cCCcccc---ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 103 TSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 103 ~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
.++.... ..-.++|+++|...+....-|.+..... +..-.+.++++||||+|.+.
T Consensus 158 ~~~~~~~err~~Y~~dI~YGT~~e~gFDYLrD~~~~~~-~~~vqr~l~~aIVDEvDsiL 215 (913)
T PRK13103 158 TPFQPPEEKRAAYAADITYGTNNEFGFDYLRDNMAFSL-DDKFQRELNFAVIDEVDSIL 215 (913)
T ss_pred CCCCCHHHHHHHhcCCEEEEcccccccchhhccceech-hhhcccccceeEechhhhee
Confidence 7764321 1245899999998875544333221111 22223788999999999875
No 148
>PRK15483 type III restriction-modification system StyLTI enzyme res; Provisional
Probab=99.50 E-value=1e-11 Score=136.09 Aligned_cols=170 Identities=13% Similarity=0.166 Sum_probs=105.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEEcChhhHHHHHHHHH---------HhhCCCCCcEEEEcCCccc--
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFK---------LWSTIQDDQICRFTSDSKE-- 108 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~~~~---------~~~~~~~~~v~~~~~~~~~-- 108 (512)
+..+.|+||+|||.+++.++..+. .++||+||+.++.+.+..-+. ...+-....+.++.+..+.
T Consensus 61 n~~~~M~TGtGKT~~~~~~i~~l~~~~~~~~fii~vp~~aI~egv~~~l~s~~~k~hF~~~y~~~~~~~~~~~S~k~~k~ 140 (986)
T PRK15483 61 NIDIKMETGTGKTYVYTRLMYELHQKYGLFKFIIVVPTPAIKEGTRNFIQSDYAKQHFSQFYENTRIELYVINAGDKKKS 140 (986)
T ss_pred eEEEEeCCCCCHHHHHHHHHHHHHHHcCCcEEEEEeCCHHHHHHHHHHhhHHHHHHHHHHHcCCceeEEEEEecCccccc
Confidence 678899999999999998886653 479999999998877664433 2112223345566554310
Q ss_pred ---cc--------------cCCCeEEEEchhhhhccC--CCchh------HHHHHHHHhcCCccEEEEcCCCCCCc--hH
Q 010367 109 ---RF--------------RGNAGVVVTTYNMVAFGG--KRSEE------SEKIIEEIRNREWGLLLMDEVHVVPA--HM 161 (512)
Q Consensus 109 ---~~--------------~~~~~Ivv~T~~~l~~~~--~r~~~------~~~~~~~l~~~~~~lvIiDEaH~~~~--~~ 161 (512)
.+ .....|.|+|.+++.+.. ++.++ ....++.+...++ +||+||.|++.+ ..
T Consensus 141 gr~~~~~~i~~Fa~~~~~~~~~I~Ilv~niqa~n~~~~~~~~~D~~l~~g~~~p~~~i~~~~P-ivIiDEPh~~~~~~k~ 219 (986)
T PRK15483 141 GRKNFPAQLSNFVKASRQNSNTIHVLLINAGMLNSASMTRDDYDQTLLGGFTSPVDALAATRP-VVIIDEPHRFPRDNKF 219 (986)
T ss_pred ccccChHHHHHHHhccccCCCceEEEEEehHHhcccccccchhhhhhccCCCChHHHHHhCCC-EEEEECCCCCCcchHH
Confidence 00 114689999999998742 22211 1123445544444 899999999975 34
Q ss_pred HHHHHHhcccceEEEEcccCCCCc---ch--HhhhHhhhCCceeeecHHHHHhCCCccccee
Q 010367 162 FRKVISLTKSHCKLGLTATLVRED---ER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQC 218 (512)
Q Consensus 162 ~~~~l~~~~~~~~l~LTATp~~~~---~~--~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~ 218 (512)
+ ..+..+++.++|.+|||..... ++ .... .+ -..+|..+..++.+++.+..+..
T Consensus 220 ~-~~i~~lnpl~~lrysAT~~~~~~~~g~~~~~~~-d~-~NlvY~LdavdAyn~~LVK~I~V 278 (986)
T PRK15483 220 Y-QAIEALKPQMIIRFGATFPDITEGKGKNKCTRK-DY-YNLQFDLNAVDSFNDGLVKGVDI 278 (986)
T ss_pred H-HHHHhcCcccEEEEeeecCCccccccccccccc-cc-cCceeecCHHHHHHhCCcceEEE
Confidence 5 4557788888999999986410 00 0000 00 13456666666766666654444
No 149
>PRK07246 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.48 E-value=9.7e-12 Score=138.18 Aligned_cols=66 Identities=20% Similarity=0.176 Sum_probs=52.3
Q ss_pred CCCCCcHHHHHHHHH---HHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--CCCEEEEEcChhhHHHHH-HHHH
Q 010367 22 PHAQPRPYQEKSLSK---MFGNGRARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWA-FQFK 89 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~---~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~-~~~~ 89 (512)
+.++.||-|.+-... .+.++ ...++.++||+|||+.++.++... +.+++|++||++|.+|.. +++.
T Consensus 242 ~~~e~R~~Q~~ma~~V~~~l~~~--~~~~~eA~tGtGKT~ayllp~l~~~~~~~vvI~t~T~~Lq~Ql~~~~i~ 313 (820)
T PRK07246 242 LGLEERPKQESFAKLVGEDFHDG--PASFIEAQTGIGKTYGYLLPLLAQSDQRQIIVSVPTKILQDQIMAEEVK 313 (820)
T ss_pred CCCccCHHHHHHHHHHHHHHhCC--CcEEEECCCCCcHHHHHHHHHHHhcCCCcEEEEeCcHHHHHHHHHHHHH
Confidence 458999999995554 45554 378889999999999998887553 579999999999999983 4443
No 150
>KOG0953 consensus Mitochondrial RNA helicase SUV3, DEAD-box superfamily [RNA processing and modification]
Probab=99.44 E-value=2e-12 Score=130.23 Aligned_cols=249 Identities=17% Similarity=0.150 Sum_probs=155.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccccc---CCCeEEEEchh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR---GNAGVVVTTYN 122 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~Ivv~T~~ 122 (512)
.+-++||.+|||.-|+.=....+ +-++.-|.+.|+....+.+... |+ .+..++|..+.... ..+..+-+|.+
T Consensus 194 i~H~GPTNSGKTy~ALqrl~~ak-sGvycGPLrLLA~EV~~r~na~-gi---pCdL~TGeE~~~~~~~~~~a~hvScTVE 268 (700)
T KOG0953|consen 194 IMHVGPTNSGKTYRALQRLKSAK-SGVYCGPLRLLAHEVYDRLNAL-GI---PCDLLTGEERRFVLDNGNPAQHVSCTVE 268 (700)
T ss_pred EEEeCCCCCchhHHHHHHHhhhc-cceecchHHHHHHHHHHHhhhc-CC---CccccccceeeecCCCCCcccceEEEEE
Confidence 34468999999998876665543 5567789999988877777764 44 46777887664332 24778889999
Q ss_pred hhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCc
Q 010367 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCKLGLTATLVREDERITDLNFLIGPK 198 (512)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~ 198 (512)
|+.-. ..+++.|+||.+.+..+ .|.+.+-.+.+.- +-|-|-|.-- +....+-...|..
T Consensus 269 M~sv~----------------~~yeVAViDEIQmm~Dp~RGwAWTrALLGl~AdE-iHLCGepsvl-dlV~~i~k~TGd~ 330 (700)
T KOG0953|consen 269 MVSVN----------------TPYEVAVIDEIQMMRDPSRGWAWTRALLGLAADE-IHLCGEPSVL-DLVRKILKMTGDD 330 (700)
T ss_pred EeecC----------------CceEEEEehhHHhhcCcccchHHHHHHHhhhhhh-hhccCCchHH-HHHHHHHhhcCCe
Confidence 88643 57899999999999876 4555444433321 2222222100 0011111111211
Q ss_pred eeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCH
Q 010367 199 LYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL 278 (512)
Q Consensus 199 ~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~ 278 (512)
+ .+..++...|+..+. .++..+ ... .+|+.++.|+...
T Consensus 331 v---------------ev~~YeRl~pL~v~~------------------------~~~~sl-~nl--k~GDCvV~FSkk~ 368 (700)
T KOG0953|consen 331 V---------------EVREYERLSPLVVEE------------------------TALGSL-SNL--KPGDCVVAFSKKD 368 (700)
T ss_pred e---------------EEEeecccCcceehh------------------------hhhhhh-ccC--CCCCeEEEeehhh
Confidence 1 111111111211110 011111 111 4688888887542
Q ss_pred HHHHHHHHHh------CCCceeCCCCHHHHHHHHHHhhCC-CCccEEEEeCCCcccccCccccEEEEecCCC--------
Q 010367 279 FALTEYAMKL------RKPMIYGATSHVERTKILQAFKCS-RDLNTIFLSKVGDNSIDIPEANVIIQISSHA-------- 343 (512)
Q Consensus 279 ~~~~~l~~~L------~~~~i~g~~~~~eR~~il~~F~~~-~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~-------- 343 (512)
+-.+...+ .+++|+|++|++.|.+--..|++. ++++|+|+|++.|+|+|+. ++.||+++-..
T Consensus 369 --I~~~k~kIE~~g~~k~aVIYGsLPPeTr~aQA~~FNd~~~e~dvlVAsDAIGMGLNL~-IrRiiF~sl~Kysg~e~~~ 445 (700)
T KOG0953|consen 369 --IFTVKKKIEKAGNHKCAVIYGSLPPETRLAQAALFNDPSNECDVLVASDAIGMGLNLN-IRRIIFYSLIKYSGRETED 445 (700)
T ss_pred --HHHHHHHHHHhcCcceEEEecCCCCchhHHHHHHhCCCCCccceEEeecccccccccc-eeEEEEeecccCCccccee
Confidence 22222222 367899999999999999999984 4899999999999999995 88888763221
Q ss_pred CCHHHHHHHhhcccccCCC
Q 010367 344 GSRRQEAQRLGRILRAKGK 362 (512)
Q Consensus 344 ~s~~~~~Q~~GR~~R~g~~ 362 (512)
-...+..|..||+||-|.+
T Consensus 446 it~sqikQIAGRAGRf~s~ 464 (700)
T KOG0953|consen 446 ITVSQIKQIAGRAGRFGSK 464 (700)
T ss_pred ccHHHHHHHhhcccccccC
Confidence 1446789999999999864
No 151
>KOG0925 consensus mRNA splicing factor ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.43 E-value=1.6e-11 Score=121.87 Aligned_cols=280 Identities=17% Similarity=0.199 Sum_probs=159.2
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH----hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCC-cEEEEcC
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDD-QICRFTS 104 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~-~v~~~~~ 104 (512)
|++.+-.++.++. ..+++++||+|||.+.-.++. ...+.+.+.-|.++.+.+.......-.++... .|+ ++-
T Consensus 51 ~k~~F~~~l~~nQ--~~v~vGetgsGKttQiPq~~~~~~~~~~~~v~CTQprrvaamsva~RVadEMDv~lG~EVG-ysI 127 (699)
T KOG0925|consen 51 QKEEFLKLLLNNQ--IIVLVGETGSGKTTQIPQFVLEYELSHLTGVACTQPRRVAAMSVAQRVADEMDVTLGEEVG-YSI 127 (699)
T ss_pred hHHHHHHHHhcCc--eEEEEecCCCCccccCcHHHHHHHHhhccceeecCchHHHHHHHHHHHHHHhccccchhcc-ccc
Confidence 3333434454442 788999999999998644442 22356666779998888888877765544321 111 111
Q ss_pred CccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC--chH----HHHHHHhcccceEEEEc
Q 010367 105 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP--AHM----FRKVISLTKSHCKLGLT 178 (512)
Q Consensus 105 ~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~--~~~----~~~~l~~~~~~~~l~LT 178 (512)
...+......-.-.+|-+||.. ..+..-....|+++|+||||.-. .+. .+.++..-+.-.++.+|
T Consensus 128 rfEdC~~~~T~Lky~tDgmLlr---------Eams~p~l~~y~viiLDeahERtlATDiLmGllk~v~~~rpdLk~vvmS 198 (699)
T KOG0925|consen 128 RFEDCTSPNTLLKYCTDGMLLR---------EAMSDPLLGRYGVIILDEAHERTLATDILMGLLKEVVRNRPDLKLVVMS 198 (699)
T ss_pred cccccCChhHHHHHhcchHHHH---------HHhhCcccccccEEEechhhhhhHHHHHHHHHHHHHHhhCCCceEEEee
Confidence 1111111122233556666542 22222123679999999999754 222 23333333344789999
Q ss_pred ccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHH
Q 010367 179 ATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACE 257 (512)
Q Consensus 179 ATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~ 257 (512)
||.. ...++.++|. .+... .| ..|+.+ -.+++.-+.|+. .+|.
T Consensus 199 atl~-----a~Kfq~yf~n~Pll~v-------pg-~~PvEi-----~Yt~e~erDylE------------------aair 242 (699)
T KOG0925|consen 199 ATLD-----AEKFQRYFGNAPLLAV-------PG-THPVEI-----FYTPEPERDYLE------------------AAIR 242 (699)
T ss_pred cccc-----hHHHHHHhCCCCeeec-------CC-CCceEE-----EecCCCChhHHH------------------HHHH
Confidence 9985 2235555542 22221 12 223332 122222334441 3455
Q ss_pred HHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC--------------CCceeCCCCHHHHHHHHHHhhC---C-CCccEEE
Q 010367 258 FLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------KPMIYGATSHVERTKILQAFKC---S-RDLNTIF 319 (512)
Q Consensus 258 ~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~--------------~~~i~g~~~~~eR~~il~~F~~---~-~~~~vlv 319 (512)
.+++.|......-++||-..-+.++..++.+. +.-+| +.+..+|++--.. + ..-+|+|
T Consensus 243 tV~qih~~ee~GDilvFLtgeeeIe~aC~~i~re~~~L~~~~g~l~v~PLy----P~~qq~iFep~p~~~~~~~~RkvVv 318 (699)
T KOG0925|consen 243 TVLQIHMCEEPGDILVFLTGEEEIEDACRKISREVDNLGPQVGPLKVVPLY----PAQQQRIFEPAPEKRNGAYGRKVVV 318 (699)
T ss_pred HHHHHHhccCCCCEEEEecCHHHHHHHHHHHHHHHHhhccccCCceEEecC----chhhccccCCCCcccCCCccceEEE
Confidence 56655542334579999999999888888762 11133 3334444332221 1 3457999
Q ss_pred EeCCCcccccCccccEEEE------------------ecCCCCCHHHHHHHhhcccccCCC
Q 010367 320 LSKVGDNSIDIPEANVIIQ------------------ISSHAGSRRQEAQRLGRILRAKGK 362 (512)
Q Consensus 320 ~t~~~~~GlDlp~~~~vI~------------------~~~~~~s~~~~~Q~~GR~~R~g~~ 362 (512)
+|.++++.+.++++-+||- +-+|. |..+-.||.||+||..+|
T Consensus 319 stniaetsltidgiv~VIDpGf~kqkVYNPRIRvesllv~PI-SkasA~qR~gragrt~pG 378 (699)
T KOG0925|consen 319 STNIAETSLTIDGIVFVIDPGFSKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRTRPG 378 (699)
T ss_pred EecchheeeeeccEEEEecCchhhhcccCcceeeeeeeeccc-hHhHHHHHhhhccCCCCC
Confidence 9999999999999888874 11222 666778899999988754
No 152
>PRK12903 secA preprotein translocase subunit SecA; Reviewed
Probab=99.42 E-value=4.4e-12 Score=135.96 Aligned_cols=114 Identities=21% Similarity=0.279 Sum_probs=82.0
Q ss_pred chHHHHHHHH-HHhhhcCCCeEEEEecCHHHHHHHHHHhC---CC--ceeCCCCHHHHHH-HHHHhhCCCCccEEEEeCC
Q 010367 251 NKFRACEFLI-RFHEQQRGDKIIVFADNLFALTEYAMKLR---KP--MIYGATSHVERTK-ILQAFKCSRDLNTIFLSKV 323 (512)
Q Consensus 251 ~k~~~l~~ll-~~~~~~~g~k~iVf~~~~~~~~~l~~~L~---~~--~i~g~~~~~eR~~-il~~F~~~~~~~vlv~t~~ 323 (512)
.|+.++..-+ +.| ..|..+||.|.+++..+.++..|. ++ +++.... +++. |+. +.|..-.|.|+|.+
T Consensus 410 ~K~~Aii~ei~~~~--~~gqPVLVgT~SIe~SE~ls~~L~~~gi~h~vLNAk~~--e~EA~IIa--~AG~~GaVTIATNM 483 (925)
T PRK12903 410 AKWKAVVKEVKRVH--KKGQPILIGTAQVEDSETLHELLLEANIPHTVLNAKQN--AREAEIIA--KAGQKGAITIATNM 483 (925)
T ss_pred HHHHHHHHHHHHHH--hcCCCEEEEeCcHHHHHHHHHHHHHCCCCceeecccch--hhHHHHHH--hCCCCCeEEEeccc
Confidence 4666655544 445 479999999999999999999993 33 3555433 3333 343 44434579999999
Q ss_pred CcccccCcccc--------EEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEE
Q 010367 324 GDNSIDIPEAN--------VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSL 381 (512)
Q Consensus 324 ~~~GlDlp~~~--------~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~l 381 (512)
+|+|.|+.--. +||....|. |.+..-|..||+||-|. +|...||.+|
T Consensus 484 AGRGTDI~Lg~~V~~~GGLhVIgTerhe-SrRIDnQLrGRaGRQGD----------pGss~f~lSL 538 (925)
T PRK12903 484 AGRGTDIKLSKEVLELGGLYVLGTDKAE-SRRIDNQLRGRSGRQGD----------VGESRFFISL 538 (925)
T ss_pred ccCCcCccCchhHHHcCCcEEEecccCc-hHHHHHHHhcccccCCC----------CCcceEEEec
Confidence 99999997332 777766666 99999999999999995 5555665554
No 153
>smart00490 HELICc helicase superfamily c-terminal domain.
Probab=99.36 E-value=1.5e-12 Score=102.46 Aligned_cols=69 Identities=26% Similarity=0.407 Sum_probs=64.3
Q ss_pred CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 290 KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 290 ~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
+..+||+++..+|.++++.|+.+ ...+|++|+++++|+|+|.+++||++++++ |+..+.|++||++|.|
T Consensus 14 ~~~~~~~~~~~~r~~~~~~f~~~-~~~vli~t~~~~~Gi~~~~~~~vi~~~~~~-~~~~~~Q~~gR~~R~g 82 (82)
T smart00490 14 VARLHGGLSQEEREEILEKFNNG-KIKVLVATDVAERGLDLPGVDLVIIYDLPW-SPASYIQRIGRAGRAG 82 (82)
T ss_pred EEEEECCCCHHHHHHHHHHHHcC-CCeEEEECChhhCCcChhcCCEEEEeCCCC-CHHHHHHhhcccccCC
Confidence 44699999999999999999997 779999999999999999999999998876 9999999999999975
No 154
>TIGR02562 cas3_yersinia CRISPR-associated helicase Cas3. The helicase in many CRISPR-associated (cas) gene clusters is designated Cas3, and most Cas3 proteins are described by model TIGR01587. Members of this family are considerably larger, show a number of motifs in common with TIGR01587 sequences, and replace Cas3 in some CRISPR/cas loci in a number of Proteobacteria, including Yersinia pestis, Chromobacterium violaceum, Erwinia carotovora subsp. atroseptica SCRI1043, Photorhabdus luminescens subsp. laumondii TTO1, Legionella pneumophila, etc.
Probab=99.32 E-value=3.6e-10 Score=123.70 Aligned_cols=323 Identities=17% Similarity=0.169 Sum_probs=174.6
Q ss_pred CCcHHHHHHHHHHHh---CC--CCcceEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 25 QPRPYQEKSLSKMFG---NG--RARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~---~~--~~~~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
.-+-+|-+|++.+.. .. .+--++-.+.||+|||+.-.-+++.+. -++.|-.-.++|.-|.-+++++-+++
T Consensus 408 ~rF~WQdkA~d~a~~~r~~~~~~GfF~vNMASTGcGKT~aNARImyaLsd~~~g~RfsiALGLRTLTLQTGda~r~rL~L 487 (1110)
T TIGR02562 408 PRFRWQNKAFNLAQKLRQKSPEQGAFGVNMASTGCGKTLANARAMYALRDDKQGARFAIALGLRSLTLQTGHALKTRLNL 487 (1110)
T ss_pred CCcchHHHHHHHHHHHHhhcccCCeEEEEecCCCcchHHHHHHHHHHhCCCCCCceEEEEccccceeccchHHHHHhcCC
Confidence 345789999997643 11 111234447999999999766665542 26777777777888888888777766
Q ss_pred CCCcEEEEcCCcc-------------------------------------------c-----------c--ccCCCeEEE
Q 010367 95 QDDQICRFTSDSK-------------------------------------------E-----------R--FRGNAGVVV 118 (512)
Q Consensus 95 ~~~~v~~~~~~~~-------------------------------------------~-----------~--~~~~~~Ivv 118 (512)
....+.++.|+.. + + ..-...|+|
T Consensus 488 ~~ddLAVlIGs~Av~~L~e~~~~~~~~~~~~GSeS~e~l~~e~~~~~~~~~~g~l~~~~l~~~l~~~~k~~rll~apv~V 567 (1110)
T TIGR02562 488 SDDDLAVLIGGTAVQTLFDLSKEKIEQVDEDGSESAPIFLAEGQDCNLPDWDGPLDTIELLGRLSLDDKEKTLLAAPVLV 567 (1110)
T ss_pred CccceEEEECHHHHHHHHHHHhhhccccccCCCccchhhhcccCcCCeeeccCCccchhhhhhhccChhhhhhhcCCeEE
Confidence 6666555544100 0 0 002267899
Q ss_pred EchhhhhccC--CC-chhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc-----cceEEEEcccCCCCcchHhh
Q 010367 119 TTYNMVAFGG--KR-SEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-----SHCKLGLTATLVREDERITD 190 (512)
Q Consensus 119 ~T~~~l~~~~--~r-~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~-----~~~~l~LTATp~~~~~~~~~ 190 (512)
+|.+.+.... -| .+....++. .--..|||||+|.+-...+..+...+. ...+++||||.+..-. ..
T Consensus 568 ~TIDQlL~a~~~~r~~~~~l~ll~----La~svlVlDEVHaYD~~~~~~L~rlL~w~~~lG~~VlLmSATLP~~l~--~~ 641 (1110)
T TIGR02562 568 CTIDHLIPATESHRGGHHIAPMLR----LMSSDLILDEPDDYEPEDLPALLRLVQLAGLLGSRVLLSSATLPPALV--KT 641 (1110)
T ss_pred ecHHHHHHHhhhcccchhHHHHHH----hcCCCEEEECCccCCHHHHHHHHHHHHHHHHcCCCEEEEeCCCCHHHH--HH
Confidence 9988776543 12 111222222 233689999999999876654444332 3468999999974221 11
Q ss_pred hHhh--hCCceeeecHHHHHhCCCc-ccceeEEEEcCC----------CHHHH---HHHHHhhc-------hHHHHHHhh
Q 010367 191 LNFL--IGPKLYEANWLDLVKGGFI-ANVQCAEVWCPM----------TKEFF---SEYLKKEN-------SKKKQALYV 247 (512)
Q Consensus 191 l~~l--~gp~~~~~~~~~l~~~~~l-~~~~~~~~~~~~----------~~~~~---~~~l~~~~-------~~~~~~~~~ 247 (512)
|... -|-..|... .|.- .++.+--.|++- ..+|. ..|+.... .+.+..+..
T Consensus 642 L~~Ay~~G~~~~q~~------~g~~~~~~~i~CaW~DE~~~~~~~~~~~~~F~~~H~~Fv~~R~~~L~~~p~~R~a~i~~ 715 (1110)
T TIGR02562 642 LFRAYEAGRQMYQAL------YGQPKKPLNICCAWVDEPQVWQADCNQKSEFIQRHQDFLRDRAVQLAKKPVRRLAELLS 715 (1110)
T ss_pred HHHHHHHHHHHHHHh------cCCCCCCcceeEEeecccCchhhhhcCHHHHHHHHHHHHHHHHHHHhcCcccceEEEee
Confidence 1111 122111110 1110 122222233221 11221 12221100 000111111
Q ss_pred c-Ccc-----hHH-----HHHHHHHHhhh------cCCCeE---EEEecCHHHHHHHHHHh-------C----CCceeCC
Q 010367 248 M-NPN-----KFR-----ACEFLIRFHEQ------QRGDKI---IVFADNLFALTEYAMKL-------R----KPMIYGA 296 (512)
Q Consensus 248 ~-~~~-----k~~-----~l~~ll~~~~~------~~g~k~---iVf~~~~~~~~~l~~~L-------~----~~~i~g~ 296 (512)
. .+. ... +.+.++..|.. ..|.+| +|-..++..+-.++..| + +.++|+.
T Consensus 716 ~~~~~~~~~~~~~~~a~~i~~~~~~LH~~h~~~~~~sgk~VSfGliR~anI~p~V~~A~~L~~~~~~~~~~i~~~~yHSr 795 (1110)
T TIGR02562 716 LSSLPRENESTYLALAQSLLEGALRLHQAHAQTDPKSEKKVSVGLIRVANIDPLIRLAQFLYALLAEEKYQIHLCCYHAQ 795 (1110)
T ss_pred cCCcccchhHHHHHHHHHHHHHHHHHHHHhCccCCCCCeEEEEEEEEEcCchHHHHHHHHHHhhccccCCceeEEEeccc
Confidence 1 110 111 22222233321 123343 66677777777777666 1 2346888
Q ss_pred CCHHHHHHHHHHh----------------------hCC---CCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHH
Q 010367 297 TSHVERTKILQAF----------------------KCS---RDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQ 351 (512)
Q Consensus 297 ~~~~eR~~il~~F----------------------~~~---~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q 351 (512)
.+-..|..+.++. +++ ....|+|+|++.+.|+|+. .+.+|.- + .+....+|
T Consensus 796 ~~l~~Rs~~E~~Ld~~L~R~~~~~~~~~~~i~~~l~~~~~~~~~~i~v~Tqv~E~g~D~d-fd~~~~~--~-~~~~sliQ 871 (1110)
T TIGR02562 796 DPLLLRSYIERRLDQLLTRHKPEQLFQDDEIIDLMQNSPALNHLFIVLATPVEEVGRDHD-YDWAIAD--P-SSMRSIIQ 871 (1110)
T ss_pred ChHHHHHHHHHHHHHHhcccChhhhhchHHHHHHHhcccccCCCeEEEEeeeEEEEeccc-CCeeeec--c-CcHHHHHH
Confidence 8666665554332 121 1456888999999999995 7888753 2 27788899
Q ss_pred HhhcccccCCCc
Q 010367 352 RLGRILRAKGKL 363 (512)
Q Consensus 352 ~~GR~~R~g~~~ 363 (512)
+.||+.|.+...
T Consensus 872 ~aGR~~R~~~~~ 883 (1110)
T TIGR02562 872 LAGRVNRHRLEK 883 (1110)
T ss_pred HhhcccccccCC
Confidence 999999998643
No 155
>PF07652 Flavi_DEAD: Flavivirus DEAD domain ; InterPro: IPR011492 This is the Flavivirus DEAD domain. The domain is related to the DEAD/DEAH box helicase domain which is found in a large family of ATPases.; GO: 0005524 ATP binding, 0008026 ATP-dependent helicase activity, 0019079 viral genome replication; PDB: 2QEQ_A 2V6J_A 2V6I_A 8OHM_A 4A92_B 1JR6_A 1HEI_A 1ONB_A 1A1V_A 1YMF_A ....
Probab=99.31 E-value=1.3e-11 Score=105.34 Aligned_cols=126 Identities=17% Similarity=0.154 Sum_probs=73.6
Q ss_pred ceEEEcCCCCcHHHHHHHHH----HhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAA----CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i----~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
-.+|-+.+|+|||.-.+.-+ ...+.++|||.||++++....+.++. . .+..-+........+...|-++|
T Consensus 6 ~~~~d~hpGaGKTr~vlp~~~~~~i~~~~rvLvL~PTRvva~em~~aL~~---~---~~~~~t~~~~~~~~g~~~i~vMc 79 (148)
T PF07652_consen 6 LTVLDLHPGAGKTRRVLPEIVREAIKRRLRVLVLAPTRVVAEEMYEALKG---L---PVRFHTNARMRTHFGSSIIDVMC 79 (148)
T ss_dssp EEEEE--TTSSTTTTHHHHHHHHHHHTT--EEEEESSHHHHHHHHHHTTT---S---SEEEESTTSS----SSSSEEEEE
T ss_pred eeEEecCCCCCCcccccHHHHHHHHHccCeEEEecccHHHHHHHHHHHhc---C---CcccCceeeeccccCCCcccccc
Confidence 56888999999998655433 23467999999999999887777754 2 12222222212234567789999
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHHHhc---ccceEEEEcccCCCCc
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLT---KSHCKLGLTATLVRED 185 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~---~~~~~l~LTATp~~~~ 185 (512)
|..+... +++-....+|+++|+||||..-.. .++-.+..+ ....+|.+||||+-..
T Consensus 80 ~at~~~~---------~~~p~~~~~yd~II~DEcH~~Dp~sIA~rg~l~~~~~~g~~~~i~mTATPPG~~ 140 (148)
T PF07652_consen 80 HATYGHF---------LLNPCRLKNYDVIIMDECHFTDPTSIAARGYLRELAESGEAKVIFMTATPPGSE 140 (148)
T ss_dssp HHHHHHH---------HHTSSCTTS-SEEEECTTT--SHHHHHHHHHHHHHHHTTS-EEEEEESS-TT--
T ss_pred cHHHHHH---------hcCcccccCccEEEEeccccCCHHHHhhheeHHHhhhccCeeEEEEeCCCCCCC
Confidence 9987542 222222378999999999997754 233333222 2236899999998544
No 156
>CHL00122 secA preprotein translocase subunit SecA; Validated
Probab=99.30 E-value=1.1e-10 Score=126.14 Aligned_cols=110 Identities=16% Similarity=0.218 Sum_probs=77.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHH---HHHHHHHhhCCCCCcEEEEcCCccc---cccCCCe
Q 010367 45 SGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQ---WAFQFKLWSTIQDDQICRFTSDSKE---RFRGNAG 115 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Q---w~~~~~~~~~~~~~~v~~~~~~~~~---~~~~~~~ 115 (512)
+-|.-+.||-|||+++..++. ..++.|-||+++..|+.+ |...+-+|+|+. |+...++... +..-.++
T Consensus 91 G~IaEm~TGEGKTL~a~l~ayl~aL~G~~VhVvT~NdyLA~RD~e~m~pvy~~LGLs---vg~i~~~~~~~err~aY~~D 167 (870)
T CHL00122 91 GKIAEMKTGEGKTLVATLPAYLNALTGKGVHIVTVNDYLAKRDQEWMGQIYRFLGLT---VGLIQEGMSSEERKKNYLKD 167 (870)
T ss_pred CccccccCCCCchHHHHHHHHHHHhcCCceEEEeCCHHHHHHHHHHHHHHHHHcCCc---eeeeCCCCChHHHHHhcCCC
Confidence 458889999999999876663 246899999999999876 666777777764 5665554331 1234578
Q ss_pred EEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 116 Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
|+.+|-..+....-|.+..... +....+.+.++||||++.+.
T Consensus 168 ItYgTn~e~gFDyLRDnm~~~~-~~~v~r~~~faIVDEvDSiL 209 (870)
T CHL00122 168 ITYVTNSELGFDYLRDNMALSL-SDVVQRPFNYCIIDEVDSIL 209 (870)
T ss_pred CEecCCccccccchhhccCcCh-HHhhccccceeeeecchhhe
Confidence 9999988777665554322111 12224678899999999875
No 157
>PRK08074 bifunctional ATP-dependent DNA helicase/DNA polymerase III subunit epsilon; Validated
Probab=99.24 E-value=2.4e-09 Score=121.33 Aligned_cols=104 Identities=14% Similarity=0.250 Sum_probs=72.8
Q ss_pred HHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCccc
Q 010367 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNS 327 (512)
Q Consensus 255 ~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~G 327 (512)
++..|.+... ..+.++||+..+...++.+++.|. ..++.-+++...|.+++++|+.+ +-.||++|....+|
T Consensus 740 la~~i~~l~~-~~~g~~LVLFtSy~~l~~v~~~l~~~~~~~~~~ll~Qg~~~~~r~~l~~~F~~~-~~~iLlG~~sFwEG 817 (928)
T PRK08074 740 VAAYIAKIAK-ATKGRMLVLFTSYEMLKKTYYNLKNEEELEGYVLLAQGVSSGSRARLTKQFQQF-DKAILLGTSSFWEG 817 (928)
T ss_pred HHHHHHHHHH-hCCCCEEEEECCHHHHHHHHHHHhhcccccCceEEecCCCCCCHHHHHHHHHhc-CCeEEEecCcccCc
Confidence 3444444444 445589999999999999988884 22233233334678999999986 66799999999999
Q ss_pred ccCccc--cEEEEecCCCCCHH-----------------------------HHHHHhhcccccC
Q 010367 328 IDIPEA--NVIIQISSHAGSRR-----------------------------QEAQRLGRILRAK 360 (512)
Q Consensus 328 lDlp~~--~~vI~~~~~~~s~~-----------------------------~~~Q~~GR~~R~g 360 (512)
||+|+- .+||+..-|+.+|. .+.|.+||.-|..
T Consensus 818 VD~pg~~l~~viI~kLPF~~p~dp~~~a~~~~~~~~g~~~F~~~~lP~A~~~lkQg~GRlIRs~ 881 (928)
T PRK08074 818 IDIPGDELSCLVIVRLPFAPPDQPVMEAKSEWAKEQGENPFQELSLPQAVLRFKQGFGRLIRTE 881 (928)
T ss_pred cccCCCceEEEEEecCCCCCCCCHHHHHHHHHHHHhCCCchhhhhhHHHHHHHHhhhhhhcccC
Confidence 999986 57777543332221 2278999999977
No 158
>PRK12902 secA preprotein translocase subunit SecA; Reviewed
Probab=99.22 E-value=1.4e-10 Score=125.10 Aligned_cols=126 Identities=17% Similarity=0.245 Sum_probs=85.0
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHH---HHHHHHHhhCCCCCcE
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ---WAFQFKLWSTIQDDQI 99 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Q---w~~~~~~~~~~~~~~v 99 (512)
+|||=.+.+-.+.-+. +.|.-+.||-|||+++..++.. .++.|-||+++--|+.. |...+-+|+|+. |
T Consensus 84 ~r~ydVQliGgl~Lh~---G~IAEM~TGEGKTL~atlpaylnAL~GkgVhVVTvNdYLA~RDae~m~~vy~~LGLt---v 157 (939)
T PRK12902 84 MRHFDVQLIGGMVLHE---GQIAEMKTGEGKTLVATLPSYLNALTGKGVHVVTVNDYLARRDAEWMGQVHRFLGLS---V 157 (939)
T ss_pred CCcchhHHHhhhhhcC---CceeeecCCCChhHHHHHHHHHHhhcCCCeEEEeCCHHHHHhHHHHHHHHHHHhCCe---E
Confidence 4444333344333232 4588899999999998766643 46899999999999875 777788888874 6
Q ss_pred EEEcCCccc---cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 100 CRFTSDSKE---RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 100 ~~~~~~~~~---~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
+...++... +..-.++|+.+|...+....-|.+..... .....+.+.++||||++.+.
T Consensus 158 g~i~~~~~~~err~aY~~DItYgTn~e~gFDYLRDnm~~~~-~~~vqR~~~faIVDEvDSIL 218 (939)
T PRK12902 158 GLIQQDMSPEERKKNYACDITYATNSELGFDYLRDNMATDI-SEVVQRPFNYCVIDEVDSIL 218 (939)
T ss_pred EEECCCCChHHHHHhcCCCeEEecCCcccccchhhhhcccc-cccccCccceEEEeccccee
Confidence 666554321 12357899999999887766554432211 11223678899999999875
No 159
>PRK14873 primosome assembly protein PriA; Provisional
Probab=99.19 E-value=4.9e-10 Score=121.08 Aligned_cols=121 Identities=16% Similarity=0.075 Sum_probs=87.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccc---------ccC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER---------FRG 112 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~---------~~~ 112 (512)
..++.+.+|+|||-+++.++... ++.+||++|...|..|+.+.|+..++ ...|.+++++.... ..+
T Consensus 162 ~~i~~~~~GSGKTevyl~~i~~~l~~Gk~vLvLvPEi~lt~q~~~rl~~~f~--~~~v~~lhS~l~~~~R~~~w~~~~~G 239 (665)
T PRK14873 162 RAVWQALPGEDWARRLAAAAAATLRAGRGALVVVPDQRDVDRLEAALRALLG--AGDVAVLSAGLGPADRYRRWLAVLRG 239 (665)
T ss_pred HHHhhcCCCCcHHHHHHHHHHHHHHcCCeEEEEecchhhHHHHHHHHHHHcC--CCcEEEECCCCCHHHHHHHHHHHhCC
Confidence 34555556999999999888554 77999999999999999999999875 34688899874432 247
Q ss_pred CCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----H--HHHH---HHhcccceEEEEcccCC
Q 010367 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----M--FRKV---ISLTKSHCKLGLTATLV 182 (512)
Q Consensus 113 ~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~--~~~~---l~~~~~~~~l~LTATp~ 182 (512)
...|+|.|.+.+.. . -.+.++||+||-|...-. . .+.+ ........+|+-||||.
T Consensus 240 ~~~IViGtRSAvFa------------P---~~~LgLIIvdEEhd~sykq~~~p~yhaRdvA~~Ra~~~~~~lvLgSaTPS 304 (665)
T PRK14873 240 QARVVVGTRSAVFA------------P---VEDLGLVAIWDDGDDLLAEPRAPYPHAREVALLRAHQHGCALLIGGHART 304 (665)
T ss_pred CCcEEEEcceeEEe------------c---cCCCCEEEEEcCCchhhcCCCCCCccHHHHHHHHHHHcCCcEEEECCCCC
Confidence 78999999986642 1 167899999999976521 1 1211 22223335677799997
No 160
>PRK12901 secA preprotein translocase subunit SecA; Reviewed
Probab=99.15 E-value=4.6e-09 Score=114.73 Aligned_cols=128 Identities=16% Similarity=0.181 Sum_probs=89.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHH---HHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD---QWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~---Qw~~~~~~~~~~~~~ 97 (512)
.-+|||=.+.+-.+.-+. +-|.-|.||-|||+++..++. ..++.|-||+.+--|+. +|...+-.|+|+.
T Consensus 166 W~m~~yDVQliGgivLh~---G~IAEM~TGEGKTLvAtlp~yLnAL~GkgVHvVTVNDYLA~RDaewmgply~fLGLs-- 240 (1112)
T PRK12901 166 WDMVHYDVQLIGGVVLHQ---GKIAEMATGEGKTLVATLPVYLNALTGNGVHVVTVNDYLAKRDSEWMGPLYEFHGLS-- 240 (1112)
T ss_pred CCCcccchHHhhhhhhcC---CceeeecCCCCchhHHHHHHHHHHHcCCCcEEEEechhhhhccHHHHHHHHHHhCCc--
Confidence 457777666666554443 568899999999999876663 33677888887777765 5999999998875
Q ss_pred cEEEEcC-C---ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 98 QICRFTS-D---SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 98 ~v~~~~~-~---~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
|++... . ...+..-.++|..+|-.-+....-|.+.....-+.+ .+.+.+.||||++.+.
T Consensus 241 -vg~i~~~~~~~~~rr~aY~~DItYgTn~EfGFDYLRDnm~~~~~~~v-qR~~~fAIVDEvDSIL 303 (1112)
T PRK12901 241 -VDCIDKHQPNSEARRKAYNADITYGTNNEFGFDYLRDNMAHSPEDLV-QRKHNYAIVDEVDSVL 303 (1112)
T ss_pred -eeecCCCCCCHHHHHHhCCCcceecCCCccccccchhccccchHhhh-CcCCceeEeechhhhh
Confidence 554433 1 111224578999999988888777766444333333 4778899999999864
No 161
>PF13872 AAA_34: P-loop containing NTP hydrolase pore-1
Probab=99.13 E-value=2.5e-09 Score=102.80 Aligned_cols=210 Identities=15% Similarity=0.103 Sum_probs=133.0
Q ss_pred CCCCcHHHHHHHHHHH-------hCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 23 HAQPRPYQEKSLSKMF-------GNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~-------~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
...|-+-|.|++--.. .++.....+|-+.||.||-.+...+|... +++.|+|..+..|...-.+.+...
T Consensus 35 ~g~LS~~QLEaV~yA~q~h~~~Lp~~~R~Gf~lGDGtGvGKGR~iAgiI~~n~l~Gr~r~vwvS~s~dL~~Da~RDl~DI 114 (303)
T PF13872_consen 35 SGLLSALQLEAVIYACQRHEQILPGGSRAGFFLGDGTGVGKGRQIAGIILENWLRGRKRAVWVSVSNDLKYDAERDLRDI 114 (303)
T ss_pred cccccHHHHHHHHHHHHHHHhhcccccCcEEEeccCCCcCccchhHHHHHHHHHcCCCceEEEECChhhhhHHHHHHHHh
Confidence 4578888999997542 22333456677899999999988777533 357999999999999988888875
Q ss_pred hCCCCCcEEEEcCCcccc-ccCCCeEEEEchhhhhccC----CCchhHHHHHHHHhcCCccEEEEcCCCCCCchH-----
Q 010367 92 STIQDDQICRFTSDSKER-FRGNAGVVVTTYNMVAFGG----KRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----- 161 (512)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~~----~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----- 161 (512)
. .....+..+..-.... ..-..+|+++||..|.... +.......+.+|+....-++||+||||..++-.
T Consensus 115 G-~~~i~v~~l~~~~~~~~~~~~~GvlF~TYs~L~~~~~~~~~~~sRl~ql~~W~g~dfdgvivfDEcH~akn~~~~~~~ 193 (303)
T PF13872_consen 115 G-ADNIPVHPLNKFKYGDIIRLKEGVLFSTYSTLISESQSGGKYRSRLDQLVDWCGEDFDGVIVFDECHKAKNLSSGSKK 193 (303)
T ss_pred C-CCcccceechhhccCcCCCCCCCccchhHHHHHhHHhccCCccchHHHHHHHHhcCCCceEEeccchhcCCCCccCcc
Confidence 3 3333333332221111 1235679999999998763 223345677788876666799999999998531
Q ss_pred -------HHHHHHhcccceEEEEcccCCCCcchHhhhHh--hhCC-------------------ceeeecHHHHHhCCCc
Q 010367 162 -------FRKVISLTKSHCKLGLTATLVREDERITDLNF--LIGP-------------------KLYEANWLDLVKGGFI 213 (512)
Q Consensus 162 -------~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~--l~gp-------------------~~~~~~~~~l~~~~~l 213 (512)
...+-..++..+++..|||...+.....-+.. +.|+ ...+.--+++...|..
T Consensus 194 ~sk~g~avl~LQ~~LP~ARvvY~SATgasep~NmaYm~RLGLWG~gtpf~~~~~f~~a~~~gGv~amE~vA~dlKa~G~y 273 (303)
T PF13872_consen 194 PSKTGIAVLELQNRLPNARVVYASATGASEPRNMAYMSRLGLWGPGTPFPDFDDFLEAMEKGGVGAMEMVAMDLKARGMY 273 (303)
T ss_pred ccHHHHHHHHHHHhCCCCcEEEecccccCCCceeeeeeeccccCCCCCCCCHHHHHHHHHhcCchHHHHHHHHHHhcchh
Confidence 11233446667899999998765433221111 1221 1223333444444433
Q ss_pred c-------cceeEEEEcCCCHHHHHHH
Q 010367 214 A-------NVQCAEVWCPMTKEFFSEY 233 (512)
Q Consensus 214 ~-------~~~~~~~~~~~~~~~~~~~ 233 (512)
. .+.+..+.+++++++..-|
T Consensus 274 iaR~LSf~gvef~~~e~~l~~~~~~~Y 300 (303)
T PF13872_consen 274 IARQLSFEGVEFEIEEVPLTPEQIKMY 300 (303)
T ss_pred eeeecccCCceEEEEEecCCHHHHHHh
Confidence 2 4566777788888876655
No 162
>COG3587 Restriction endonuclease [Defense mechanisms]
Probab=99.11 E-value=2.4e-09 Score=113.45 Aligned_cols=166 Identities=11% Similarity=0.093 Sum_probs=99.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEEcChhhHHHH-------HHHH-HHhhCCCCCcEEEEcC-Ccccc-
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQW-------AFQF-KLWSTIQDDQICRFTS-DSKER- 109 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw-------~~~~-~~~~~~~~~~v~~~~~-~~~~~- 109 (512)
++=|.|+||+|||.+++-.+..+. -+++||||+.++.+-. .+.| .............+.. ..+..
T Consensus 76 NiDI~METGTGKTy~YlrtmfeLhk~YG~~KFIivVPs~AIkeGv~~~s~~~~ehF~k~~Yent~~e~~i~~~~~~~~~~ 155 (985)
T COG3587 76 NIDILMETGTGKTYTYLRTMFELHKKYGLFKFIIVVPSLAIKEGVFLTSKETTEHFFKSEYENTRLESYIYDEDIEKFKF 155 (985)
T ss_pred eeeEEEecCCCceeeHHHHHHHHHHHhCceeEEEEeccHHHHhhhHHHHHHHHHHHhhhhccCcceeEEeechHHHHHhh
Confidence 566789999999999998887664 3899999999875542 2334 3322222223333322 11111
Q ss_pred -ccCCCeEEEEchhhhhcc---CCCchh-----------HHHHHHHHhcCCccEEEEcCCCCCCc-hHHHHHHHhcccce
Q 010367 110 -FRGNAGVVVTTYNMVAFG---GKRSEE-----------SEKIIEEIRNREWGLLLMDEVHVVPA-HMFRKVISLTKSHC 173 (512)
Q Consensus 110 -~~~~~~Ivv~T~~~l~~~---~~r~~~-----------~~~~~~~l~~~~~~lvIiDEaH~~~~-~~~~~~l~~~~~~~ 173 (512)
....+.|++.|.+.+.+. ...-+. ....++.+...++ +||+||-|++.+ ...-..+..+++.+
T Consensus 156 ~~~~~~~vLl~~~~Afnk~~inan~iN~~s~~~~~~~~~~~spvd~la~~rP-IvIvDEPh~f~~~~k~~~~i~~l~pl~ 234 (985)
T COG3587 156 KSNNKPCVLLIFVSAFNKEEINANMINSESMENTNLFNGATSPVDALASMRP-IVIVDEPHRFLGDDKTYGAIKQLNPLL 234 (985)
T ss_pred ccCCCceEEEEehhhhccccccccccchhhhcccCccccccCHHHHHHhcCC-EEEecChhhcccchHHHHHHHhhCceE
Confidence 235677888888877665 211110 1222334433333 899999999998 33334566678889
Q ss_pred EEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEE
Q 010367 174 KLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEV 221 (512)
Q Consensus 174 ~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~ 221 (512)
.|-++||....... .+|..+..+...++.+..+.+..+
T Consensus 235 ilRfgATfkd~y~~----------l~yrLDsi~Af~~~LVK~I~v~~v 272 (985)
T COG3587 235 ILRFGATFKDEYNN----------LVYRLDSIDAFNQKLVKQIRVFSV 272 (985)
T ss_pred EEEecccchhhhcC----------eeEEeeHHhhhhhhhhhheeeeee
Confidence 99999998753321 345555555555555554444433
No 163
>COG3421 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=99.07 E-value=4.2e-09 Score=107.49 Aligned_cols=167 Identities=17% Similarity=0.240 Sum_probs=104.5
Q ss_pred EEcCCCCcHHHHHHHHHHhcC----CCEEEEEcChhhHHHHHHHHHH-----hh-----CCCCCcEEEEcCCccccccCC
Q 010367 48 IVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFKL-----WS-----TIQDDQICRFTSDSKERFRGN 113 (512)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~~~~~-----~~-----~~~~~~v~~~~~~~~~~~~~~ 113 (512)
..|.||+|||+++..+|..+. +.+|+.|....+++-....|.. |+ .+.+..+.+-.-..-......
T Consensus 2 f~matgsgkt~~ma~lil~~y~kgyr~flffvnq~nilekt~~nftd~~s~kylf~e~i~~~d~~i~ikkvn~fsehnd~ 81 (812)
T COG3421 2 FEMATGSGKTLVMAGLILECYKKGYRNFLFFVNQANILEKTKLNFTDSVSSKYLFSENININDENIEIKKVNNFSEHNDA 81 (812)
T ss_pred cccccCCChhhHHHHHHHHHHHhchhhEEEEecchhHHHHHHhhcccchhhhHhhhhhhhcCCceeeeeeecccCccCCc
Confidence 468999999999999887662 4799999988888876665532 21 111111111111111113456
Q ss_pred CeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-------------HHHHHHH----hcccceEEE
Q 010367 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------------MFRKVIS----LTKSHCKLG 176 (512)
Q Consensus 114 ~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-------------~~~~~l~----~~~~~~~l~ 176 (512)
..|++||.+.|....-|..+....++.+...+. +++-|||||+.+. .+..++. .-+....|.
T Consensus 82 iei~fttiq~l~~d~~~~ken~itledl~~~kl-vfl~deahhln~~tkkk~~de~~~~~~we~~v~la~~~nkd~~~le 160 (812)
T COG3421 82 IEIYFTTIQGLFSDFTRAKENAITLEDLKDQKL-VFLADEAHHLNTETKKKLNDEASEKRNWESVVKLALEQNKDNLLLE 160 (812)
T ss_pred eEEEEeehHHHHHHHHhhccccccHhhHhhCce-EEEechhhhhhhhhhhhcccHHHHHhhHHHHHHHHHhcCCCceeeh
Confidence 789999999998775554444445556643333 6677999999753 2322222 113346788
Q ss_pred EcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCccccee
Q 010367 177 LTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQC 218 (512)
Q Consensus 177 LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~ 218 (512)
+|||...+... ...+-..+++.+++.+..+.|+...+..
T Consensus 161 f~at~~k~k~v---~~ky~dkiv~~y~lk~f~e~gytk~i~~ 199 (812)
T COG3421 161 FSATIPKEKSV---EDKYEDKIVVTYTLKQFSEDGYTKNIYS 199 (812)
T ss_pred hhhcCCccccH---HHHhccceEEeeeHHHhhhhcchhhhhh
Confidence 89998744333 2344456788899999999998776543
No 164
>PF02399 Herpes_ori_bp: Origin of replication binding protein; InterPro: IPR003450 This entry represents replication origin binding protein. It functions as a docking protein to recruit essential components of the viral replication machinery to viral DNA origins. In the presence of the major DNA-binding protein, it opens dsDNA which leads to a conformational change in the origin that facilitates DNA unwinding and subsequent replication [].; GO: 0003688 DNA replication origin binding, 0005524 ATP binding, 0006260 DNA replication
Probab=99.06 E-value=1.2e-08 Score=109.38 Aligned_cols=290 Identities=13% Similarity=0.131 Sum_probs=163.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccccc-CCCeEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR-GNAGVVVT 119 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~Ivv~ 119 (512)
-.+|.+|||+|||...+.++... ..++|+|..+++|+.+....|+.. ++++ ...|.......+. ...+-+++
T Consensus 51 V~vVRSpMGTGKTtaLi~wLk~~l~~~~~~VLvVShRrSL~~sL~~rf~~~-~l~g--Fv~Y~d~~~~~i~~~~~~rLiv 127 (824)
T PF02399_consen 51 VLVVRSPMGTGKTTALIRWLKDALKNPDKSVLVVSHRRSLTKSLAERFKKA-GLSG--FVNYLDSDDYIIDGRPYDRLIV 127 (824)
T ss_pred eEEEECCCCCCcHHHHHHHHHHhccCCCCeEEEEEhHHHHHHHHHHHHhhc-CCCc--ceeeeccccccccccccCeEEE
Confidence 45778999999999888888665 479999999999999999999864 2321 2222222221121 23567777
Q ss_pred chhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH-------HHHH----hc-ccceEEEEcccCCCCcch
Q 010367 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR-------KVIS----LT-KSHCKLGLTATLVREDER 187 (512)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~-------~~l~----~~-~~~~~l~LTATp~~~~~~ 187 (512)
..++|..... ..+ .+|++|||||+-.+.+.-|. .+.. .+ .++.+|.+-||... ..
T Consensus 128 qIdSL~R~~~---------~~l--~~yDvVIIDEv~svL~qL~S~Tm~~~~~v~~~L~~lI~~ak~VI~~DA~ln~--~t 194 (824)
T PF02399_consen 128 QIDSLHRLDG---------SLL--DRYDVVIIDEVMSVLNQLFSPTMRQREEVDNLLKELIRNAKTVIVMDADLND--QT 194 (824)
T ss_pred Eehhhhhccc---------ccc--cccCEEEEehHHHHHHHHhHHHHhhHHHHHHHHHHHHHhCCeEEEecCCCCH--HH
Confidence 8887765421 112 46999999999766543221 1111 11 46789999999852 22
Q ss_pred HhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhc-hHHHH----------HHhhcCcchHHHH
Q 010367 188 ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN-SKKKQ----------ALYVMNPNKFRAC 256 (512)
Q Consensus 188 ~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~-~~~~~----------~~~~~~~~k~~~l 256 (512)
..-+..+-|..-...-+.+....|+-.+ +|.... .+..+.....++... ..... .-...........
T Consensus 195 vdFl~~~Rp~~~i~vI~n~y~~~~fs~R-~~~~~~-~l~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tF~ 272 (824)
T PF02399_consen 195 VDFLASCRPDENIHVIVNTYASPGFSNR-RCTFLR-SLGTDTLAAALNPEDENADTSPTPKHSPDPTATAAISNDETTFF 272 (824)
T ss_pred HHHHHHhCCCCcEEEEEeeeecCCcccc-eEEEec-ccCcHHHHHHhCCcccccccCCCcCCCCccccccccccchhhHH
Confidence 2223333343333333334444444322 222111 222222222221000 00000 0000001122344
Q ss_pred HHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCc
Q 010367 257 EFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP 331 (512)
Q Consensus 257 ~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp 331 (512)
..|...+ ..|.++-|||.++..++.+++.. . +.+++|..+.. .+ +...+++|++-|.+...|+++-
T Consensus 273 ~~L~~~L--~~gknIcvfsSt~~~~~~v~~~~~~~~~~Vl~l~s~~~~~---dv----~~W~~~~VviYT~~itvG~Sf~ 343 (824)
T PF02399_consen 273 SELLARL--NAGKNICVFSSTVSFAEIVARFCARFTKKVLVLNSTDKLE---DV----ESWKKYDVVIYTPVITVGLSFE 343 (824)
T ss_pred HHHHHHH--hCCCcEEEEeChHHHHHHHHHHHHhcCCeEEEEcCCCCcc---cc----ccccceeEEEEeceEEEEeccc
Confidence 5555555 36889999999999988888776 2 22455554433 22 2235789999999999999997
Q ss_pred ccc--EEEEe-cC--CCCCHHHHHHHhhcccccCC
Q 010367 332 EAN--VIIQI-SS--HAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 332 ~~~--~vI~~-~~--~~~s~~~~~Q~~GR~~R~g~ 361 (512)
... -++.| .+ ...+.....|++||+-....
T Consensus 344 ~~HF~~~f~yvk~~~~gpd~~s~~Q~lgRvR~l~~ 378 (824)
T PF02399_consen 344 EKHFDSMFAYVKPMSYGPDMVSVYQMLGRVRSLLD 378 (824)
T ss_pred hhhceEEEEEecCCCCCCcHHHHHHHHHHHHhhcc
Confidence 553 33333 11 11144567999999977774
No 165
>COG1199 DinG Rad3-related DNA helicases [Transcription / DNA replication, recombination, and repair]
Probab=99.05 E-value=9.7e-09 Score=113.20 Aligned_cols=67 Identities=22% Similarity=0.230 Sum_probs=54.6
Q ss_pred CCCCCCcHHHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhcC----CCEEEEEcChhhHHHHHHHHH
Q 010367 21 KPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIK----KSCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
-+.+.+||.|.+.+..+. .++ +.+++-+|||+|||+.++.++.... ++++|.+++..+.+|..++..
T Consensus 11 ~~~~~~r~~Q~~~~~~v~~a~~~~--~~~~iEapTGtGKTl~yL~~al~~~~~~~~~viist~t~~lq~q~~~~~~ 84 (654)
T COG1199 11 FPGFEPRPEQREMAEAVAEALKGG--EGLLIEAPTGTGKTLAYLLPALAYAREEGKKVIISTRTKALQEQLLEEDL 84 (654)
T ss_pred CCCCCCCHHHHHHHHHHHHHHcCC--CcEEEECCCCccHHHHHHHHHHHHHHHcCCcEEEECCCHHHHHHHHHhhc
Confidence 456899999999998764 333 3599999999999999988886553 899999999999998776654
No 166
>KOG4150 consensus Predicted ATP-dependent RNA helicase [RNA processing and modification]
Probab=99.05 E-value=1.6e-09 Score=109.55 Aligned_cols=325 Identities=13% Similarity=0.025 Sum_probs=190.4
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhC-CCC---
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQD--- 96 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~-~~~--- 96 (512)
...+|.+++..+-++. +.++.-.+.+||.++.-..+..+ ....+++.|+.+++.+..+.+.-... ++.
T Consensus 287 ~~~~~~~~~~~~~~G~---~~~~~~~~~~GK~~~~~~~s~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~V~~~~I~~~K~ 363 (1034)
T KOG4150|consen 287 GIAISLELLKFASEGR---ADGGNEARQAGKGTCPTSGSRKFQTLCHATNSLLPSEMVEHLRNGSKGQVVHVEVIKARKS 363 (1034)
T ss_pred hhhhhHHHHhhhhhcc---cccccchhhcCCccCcccchhhhhhcCcccceecchhHHHHhhccCCceEEEEEehhhhhc
Confidence 4567888887654443 77888899999998865544333 23678888888877765554432211 111
Q ss_pred CcEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHh----cCCccEEEEcCCCCCCch-------H
Q 010367 97 DQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR----NREWGLLLMDEVHVVPAH-------M 161 (512)
Q Consensus 97 ~~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~----~~~~~lvIiDEaH~~~~~-------~ 161 (512)
.-|..+.+..... ...+..++.+.++++.... +...+. -.+..++++||+|.+... .
T Consensus 364 A~V~~~D~~sE~~~~A~~R~~~~~~~s~~~~~~s~~--------L~~~~~~~~~~~~~~~~~~~~~~~Y~~~~~~~~~~~ 435 (1034)
T KOG4150|consen 364 AYVEMSDKLSETTKSALKRIGLNTLYSHQAEAISAA--------LAKSLCYNVPVFEELCKDTNSCALYLFPTKALAQDQ 435 (1034)
T ss_pred ceeecccCCCchhHHHHHhcCcceeecCHHHHHHHH--------hhhccccccHHHHHHHhcccceeeeecchhhHHHHH
Confidence 1122233322110 1245778888888876431 111100 012357899999998754 4
Q ss_pred HHHHHHhccc------ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHH
Q 010367 162 FRKVISLTKS------HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLK 235 (512)
Q Consensus 162 ~~~~l~~~~~------~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~ 235 (512)
.++++..++. ..++--+||.........++..+-.-.+. ...|--..-....+|-|-.+...+.
T Consensus 436 ~R~L~~L~~~F~~~~~~~~~~~~~~~K~~~~~~~~~~~~~E~~Li-------~~DGSPs~~K~~V~WNP~~~P~~~~--- 505 (1034)
T KOG4150|consen 436 LRALSDLIKGFEASINMGVYDGDTPYKDRTRLRSELANLSELELV-------TIDGSPSSEKLFVLWNPSAPPTSKS--- 505 (1034)
T ss_pred HHHHHHHHHHHHhhcCcceEeCCCCcCCHHHHHHHhcCCcceEEE-------EecCCCCccceEEEeCCCCCCcchh---
Confidence 4444444321 13444455544322222222211111110 0123333334456665532111100
Q ss_pred hhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-------------CCceeCCCCHHHH
Q 010367 236 KENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-------------KPMIYGATSHVER 302 (512)
Q Consensus 236 ~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-------------~~~i~g~~~~~eR 302 (512)
++ .+++.-...|+-..- ..|-++|-||..+..++.+..... +..+.|+-..++|
T Consensus 506 -----~~-------~~~i~E~s~~~~~~i-~~~~R~IAFC~~R~~CEL~~~~~R~I~~ET~~~LV~~i~SYRGGY~A~DR 572 (1034)
T KOG4150|consen 506 -----EK-------SSKVVEVSHLFAEMV-QHGLRCIAFCPSRKLCELVLCLTREILAETAPHLVEAITSYRGGYIAEDR 572 (1034)
T ss_pred -----hh-------hhHHHHHHHHHHHHH-HcCCcEEEeccHHHHHHHHHHHHHHHHHHhhHHHHHHHHhhcCccchhhH
Confidence 00 011111122221111 457899999999998887765441 2347789999999
Q ss_pred HHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEE
Q 010367 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLV 382 (512)
Q Consensus 303 ~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv 382 (512)
.+|....-.| +..-+|+|.+++.|||+-..+.|+++..|. |...+.|..||+||-.. ......++
T Consensus 573 RKIE~~~F~G-~L~giIaTNALELGIDIG~LDAVl~~GFP~-S~aNl~QQ~GRAGRRNk-------------~SLavyva 637 (1034)
T KOG4150|consen 573 RKIESDLFGG-KLCGIIATNALELGIDIGHLDAVLHLGFPG-SIANLWQQAGRAGRRNK-------------PSLAVYVA 637 (1034)
T ss_pred HHHHHHhhCC-eeeEEEecchhhhccccccceeEEEccCch-hHHHHHHHhccccccCC-------------CceEEEEE
Confidence 9998888786 899999999999999999999999998876 99999999999999552 23334466
Q ss_pred eCCcHhhHHHHHHHHHH
Q 010367 383 STDTQEMFYSTKRQQFL 399 (512)
Q Consensus 383 ~~~t~e~~~~~~r~~~l 399 (512)
....++.+|...-...+
T Consensus 638 ~~~PVDQ~Y~~HP~~l~ 654 (1034)
T KOG4150|consen 638 FLGPVDQYYMSHPDKLF 654 (1034)
T ss_pred eccchhhHhhcCcHHHh
Confidence 66777777765544444
No 167
>TIGR00604 rad3 DNA repair helicase (rad3). All proteins in this family for which funcitons are known are DNA-DNA helicases that funciton in the initiation of transcription and nucleotide excision repair as part of the TFIIH complex. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.98 E-value=1.9e-07 Score=103.34 Aligned_cols=66 Identities=15% Similarity=0.240 Sum_probs=50.4
Q ss_pred CCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHh----cC--CCEEEEEcChhhHHHHHHHHHH
Q 010367 25 QPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACR----IK--KSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~----~~--~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
.+||.|.+.+..+... ..+..+++-+|||+|||++.+.++.. .+ .++++.+.|..=..|..+|+++
T Consensus 10 ~~y~~Q~~~m~~v~~~l~~~~~~llEsPTGtGKTlslL~~aL~~~~~~~~~~kIiy~sRThsQl~q~i~Elk~ 82 (705)
T TIGR00604 10 KIYPEQRSYMRDLKRSLDRGDEAILEMPSGTGKTISLLSLILAYQQEKPEVRKIIYASRTHSQLEQATEELRK 82 (705)
T ss_pred CCCHHHHHHHHHHHHHhccCCceEEeCCCCCCccHHHHHHHHHHHHhccccccEEEEcccchHHHHHHHHHHh
Confidence 4599999999987532 12248999999999999987766643 22 4688888888778888888887
No 168
>KOG0951 consensus RNA helicase BRR2, DEAD-box superfamily [RNA processing and modification]
Probab=98.91 E-value=7.1e-08 Score=105.83 Aligned_cols=271 Identities=15% Similarity=0.164 Sum_probs=156.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc--CCCEEEEEcChhhHHHHHHHHHHhh-CCCCCcEEEEcCCcc--ccccCCCeEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWS-TIQDDQICRFTSDSK--ERFRGNAGVVV 118 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~~~~~~~-~~~~~~v~~~~~~~~--~~~~~~~~Ivv 118 (512)
++.++.+|+|+|||.++-.++... ..++++++|.-+++.-....+.+.+ ......+..++|... -++....+|+|
T Consensus 1160 d~v~vga~~gsgkt~~ae~a~l~~~~~~~~vyi~p~~~i~~~~~~~w~~~f~~~~G~~~~~l~ge~s~~lkl~~~~~vii 1239 (1674)
T KOG0951|consen 1160 DNVLVGAPNGSGKTACAELALLRPDTIGRAVYIAPLEEIADEQYRDWEKKFSKLLGLRIVKLTGETSLDLKLLQKGQVII 1239 (1674)
T ss_pred ceEEEecCCCCchhHHHHHHhcCCccceEEEEecchHHHHHHHHHHHHHhhccccCceEEecCCccccchHHhhhcceEE
Confidence 488999999999999998887663 3589999999887665444443322 223345666666533 22346688999
Q ss_pred EchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---------HHHHHHHhc-ccceEEEEcccCCCCcchH
Q 010367 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---------MFRKVISLT-KSHCKLGLTATLVREDERI 188 (512)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---------~~~~~l~~~-~~~~~l~LTATp~~~~~~~ 188 (512)
+|++.+... +. ....++.|.||.|.+.+. ..+.+...+ +.-+.++||-.....-+
T Consensus 1240 ~tpe~~d~l-----------q~--iQ~v~l~i~d~lh~igg~~g~v~evi~S~r~ia~q~~k~ir~v~ls~~lana~d-- 1304 (1674)
T KOG0951|consen 1240 STPEQWDLL-----------QS--IQQVDLFIVDELHLIGGVYGAVYEVICSMRYIASQLEKKIRVVALSSSLANARD-- 1304 (1674)
T ss_pred echhHHHHH-----------hh--hhhcceEeeehhhhhcccCCceEEEEeeHHHHHHHHHhheeEEEeehhhccchh--
Confidence 999977532 22 256789999999999842 223333333 23356777766543222
Q ss_pred hhhHhhhCC---ceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhh
Q 010367 189 TDLNFLIGP---KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQ 265 (512)
Q Consensus 189 ~~l~~l~gp---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~ 265 (512)
++|- .+++... .--..|..++..-+..+. +-...+ .|.. .....+..+.
T Consensus 1305 -----~ig~s~~~v~Nf~p-----~~R~~Pl~i~i~~~~~~~-~~~~~~------------am~~---~~~~ai~~~a-- 1356 (1674)
T KOG0951|consen 1305 -----LIGASSSGVFNFSP-----SVRPVPLEIHIQSVDISH-FESRML------------AMTK---PTYTAIVRHA-- 1356 (1674)
T ss_pred -----hccccccceeecCc-----ccCCCceeEEEEEeccch-hHHHHH------------Hhhh---hHHHHHHHHh--
Confidence 1221 1111110 001112222222222111 111111 0110 1223333333
Q ss_pred cCCCeEEEEecCHHHHHHHHHHh-----------------C----------CCceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 266 QRGDKIIVFADNLFALTEYAMKL-----------------R----------KPMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L-----------------~----------~~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
..+...+||.+.++++..++.-| + .-+-|-+++..+.+-+-+-|..| .+.|+
T Consensus 1357 ~~~k~~~vf~p~rk~~~~~a~~~~~~s~~~~~~~l~~~~e~~~~~l~e~l~~gvg~e~~s~~d~~iv~~l~e~g-~i~v~ 1435 (1674)
T KOG0951|consen 1357 GNRKPAIVFLPTRKHARLVAVDLVTFSHADEPDYLLSELEECDETLRESLKHGVGHEGLSSNDQEIVQQLFEAG-AIQVC 1435 (1674)
T ss_pred cCCCCeEEEeccchhhhhhhhccchhhccCcHHHHHHHHhcchHhhhhcccccccccccCcchHHHHHHHHhcC-cEEEE
Confidence 45778999999999887776554 0 01124556666666667778886 99999
Q ss_pred EEeCCCcccccCccccEEEEe-----c------CCCCCHHHHHHHhhcccccCC
Q 010367 319 FLSKVGDNSIDIPEANVIIQI-----S------SHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~-----~------~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|.+.- -.|+-+. ++.||.+ + .+. +.....|++|+++|+|+
T Consensus 1436 v~s~~-~~~~~~~-~~lVvvmgt~~ydg~e~~~~~y-~i~~ll~m~G~a~~~~k 1486 (1674)
T KOG0951|consen 1436 VMSRD-CYGTKLK-AHLVVVMGTQYYDGKEHSYEDY-PIAELLQMVGLASGAGK 1486 (1674)
T ss_pred EEEcc-ccccccc-ceEEEEecceeecccccccccC-chhHHHHHhhhhcCCcc
Confidence 98755 6677765 4544432 1 122 45677999999999873
No 169
>COG0653 SecA Preprotein translocase subunit SecA (ATPase, RNA helicase) [Intracellular trafficking and secretion]
Probab=98.70 E-value=7.7e-08 Score=103.86 Aligned_cols=128 Identities=17% Similarity=0.193 Sum_probs=88.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHH---HHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD---QWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~---Qw~~~~~~~~~~~~~ 97 (512)
.-+|||=.+-+-.+.-+. +.+.-+-||-|||+++..++.- .++.+.||...--|+. .|...+-.|+|+.
T Consensus 77 lg~~~~dVQliG~i~lh~---g~iaEM~TGEGKTL~atlp~ylnaL~gkgVhvVTvNdYLA~RDae~m~~l~~~LGls-- 151 (822)
T COG0653 77 LGMRHFDVQLLGGIVLHL---GDIAEMRTGEGKTLVATLPAYLNALAGKGVHVVTVNDYLARRDAEWMGPLYEFLGLS-- 151 (822)
T ss_pred cCCChhhHHHhhhhhhcC---CceeeeecCCchHHHHHHHHHHHhcCCCCcEEeeehHHhhhhCHHHHHHHHHHcCCc--
Confidence 346666555566555554 6789999999999999877743 3678888887766654 4777788888764
Q ss_pred cEEEEcCCcc---ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 98 QICRFTSDSK---ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 98 ~v~~~~~~~~---~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
|++...+.. .+..-.++|..+|.+-+-...-|.+.....-+.. .+...+.|+||++.+.
T Consensus 152 -vG~~~~~m~~~ek~~aY~~DItY~TnnElGFDYLRDNm~~~~ee~v-qr~~~faIvDEvDSIL 213 (822)
T COG0653 152 -VGVILAGMSPEEKRAAYACDITYGTNNELGFDYLRDNMVTSQEEKV-QRGLNFAIVDEVDSIL 213 (822)
T ss_pred -eeeccCCCChHHHHHHHhcCceeccccccCcchhhhhhhccHHHhh-hccCCeEEEcchhhee
Confidence 555444432 1223568899999998888877766443333333 2567889999998764
No 170
>TIGR00596 rad1 DNA repair protein (rad1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford Universit
Probab=98.67 E-value=1.6e-06 Score=95.65 Aligned_cols=66 Identities=9% Similarity=-0.037 Sum_probs=44.1
Q ss_pred cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHHHHHHhc----ccceEEEEcccCCCC
Q 010367 111 RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLT----KSHCKLGLTATLVRE 184 (512)
Q Consensus 111 ~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~~~l~~~----~~~~~l~LTATp~~~ 184 (512)
....+|+++|++.|.... +...+....+..+||||||++... .+.-++..+ +..++.++||.|...
T Consensus 5 y~~ggi~~~T~rIl~~Dl--------L~~ri~~~~itgiiv~~Ahr~~~~~~eaFI~rlyr~~n~~gfIkafSdsP~~~ 75 (814)
T TIGR00596 5 YLEGGIFSITSRILVVDL--------LTGIIPPELITGILVLRADRIIESSQEAFILRLYRQKNKTGFIKAFSDNPEAF 75 (814)
T ss_pred hhcCCEEEEechhhHhHH--------hcCCCCHHHccEEEEeecccccccccHHHHHHHHHHhCCCcceEEecCCCccc
Confidence 345679999999887542 111222256789999999999754 333333333 345899999999864
No 171
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=98.62 E-value=2e-07 Score=99.93 Aligned_cols=86 Identities=8% Similarity=-0.003 Sum_probs=59.4
Q ss_pred HHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh----CCC-ceeCCCCHHHHHHHHHHhhCC---CCccEEEEeCCCcc
Q 010367 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----RKP-MIYGATSHVERTKILQAFKCS---RDLNTIFLSKVGDN 326 (512)
Q Consensus 255 ~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----~~~-~i~g~~~~~eR~~il~~F~~~---~~~~vlv~t~~~~~ 326 (512)
++..+...+. ..+..++|.+.+...++.+++.| ..+ ++.|+.+ .+..++++|+.. +.-.|||+|...-+
T Consensus 458 ~~~~~~~~~~-~~~G~~lvLfTS~~~~~~~~~~l~~~l~~~~l~qg~~~--~~~~l~~~f~~~~~~~~~~vL~gt~sfwe 534 (636)
T TIGR03117 458 VSLSTAAILR-KAQGGTLVLTTAFSHISAIGQLVELGIPAEIVIQSEKN--RLASAEQQFLALYANGIQPVLIAAGGAWT 534 (636)
T ss_pred HHHHHHHHHH-HcCCCEEEEechHHHHHHHHHHHHhhcCCCEEEeCCCc--cHHHHHHHHHHhhcCCCCcEEEeCCcccc
Confidence 5566666666 34446667666667778777777 333 4566543 567789999873 25689999999999
Q ss_pred cccC----------ccccEEEEecCCC
Q 010367 327 SIDI----------PEANVIIQISSHA 343 (512)
Q Consensus 327 GlDl----------p~~~~vI~~~~~~ 343 (512)
|||+ ..+++||+..-|+
T Consensus 535 GvDv~~~~~~p~~G~~Ls~ViI~kLPF 561 (636)
T TIGR03117 535 GIDLTHKPVSPDKDNLLTDLIITCAPF 561 (636)
T ss_pred ccccCCccCCCCCCCcccEEEEEeCCC
Confidence 9999 2366888765554
No 172
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=98.61 E-value=6.8e-08 Score=106.44 Aligned_cols=150 Identities=13% Similarity=0.095 Sum_probs=99.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---------------------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---------------------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---------------------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~ 102 (512)
..++++..+|+|||...+...... -+.+|||||.. +..||..|+.+..... ..|..|
T Consensus 375 ~~~~~ade~~~qk~~~~l~~~l~~~~k~~~~~cS~~~~e~~n~~~tgaTLII~P~a-Il~QW~~EI~kH~~~~-lKv~~Y 452 (1394)
T KOG0298|consen 375 KRVQCADEMGWQKTSEKLILELSDLPKLCPSCCSELVKEGENLVETGATLIICPNA-ILMQWFEEIHKHISSL-LKVLLY 452 (1394)
T ss_pred cceeehhhhhccchHHHHHHHHhcccccchhhhhHHHhcccceeecCceEEECcHH-HHHHHHHHHHHhcccc-ceEEEE
Confidence 356899999999999876555211 14699999966 7999999999974322 367777
Q ss_pred cCCcccc-----ccCCCeEEEEchhhhhccCCCc--hhHHHHHHH----------HhcCCccEEEEcCCCCCCch--HHH
Q 010367 103 TSDSKER-----FRGNAGVVVTTYNMVAFGGKRS--EESEKIIEE----------IRNREWGLLLMDEVHVVPAH--MFR 163 (512)
Q Consensus 103 ~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~--~~~~~~~~~----------l~~~~~~lvIiDEaH~~~~~--~~~ 163 (512)
-|-.+.. ..-.++||+|||+.|.+..-.. ..+.+.+.. |....|--|++|||+++... ...
T Consensus 453 ~Girk~~~~~~~el~~yDIVlTtYdiLr~El~hte~~~~~R~lR~qsr~~~~~SPL~~v~wWRIclDEaQMvesssS~~a 532 (1394)
T KOG0298|consen 453 FGIRKTFWLSPFELLQYDIVLTTYDILRNELYHTEDFGSDRQLRHQSRYMRPNSPLLMVNWWRICLDEAQMVESSSSAAA 532 (1394)
T ss_pred echhhhcccCchhhhccCEEEeehHHHHhHhhcccccCChhhhhcccCCCCCCCchHHHHHHHHhhhHHHhhcchHHHHH
Confidence 7643321 1356999999999998753211 111111111 11123556999999999864 445
Q ss_pred HHHHhcccceEEEEcccCCCCcchHhhhHhhh
Q 010367 164 KVISLTKSHCKLGLTATLVREDERITDLNFLI 195 (512)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~ 195 (512)
+.+..+.+..+.+.||||.+.-+.+..|.+++
T Consensus 533 ~M~~rL~~in~W~VTGTPiq~Iddl~~Ll~fL 564 (1394)
T KOG0298|consen 533 EMVRRLHAINRWCVTGTPIQKIDDLFPLLEFL 564 (1394)
T ss_pred HHHHHhhhhceeeecCCchhhhhhhHHHHHHh
Confidence 56677788889999999998744444444443
No 173
>PF13086 AAA_11: AAA domain; PDB: 2XZL_A 2XZO_A 2WJY_A 2WJV_A 2XZP_A 2GK6_A 2GK7_A 2GJK_A.
Probab=98.54 E-value=4.6e-07 Score=86.15 Aligned_cols=63 Identities=19% Similarity=0.256 Sum_probs=49.1
Q ss_pred CCcHHHHHHHHHHHhCCCCcc-eEEEcCCCCcHHHHHHHHHHhc-----------CCCEEEEEcChhhHHHHHHHHHH
Q 010367 25 QPRPYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRI-----------KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~-----------~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
+|.+.|.+|+..++... . .+|.+|+|+|||.+...++..+ ++++||++|+...+++....+.+
T Consensus 1 ~ln~~Q~~Ai~~~~~~~---~~~~i~GpPGTGKT~~l~~~i~~~~~~~~~~~~~~~~~il~~~~sN~avd~~~~~l~~ 75 (236)
T PF13086_consen 1 KLNESQREAIQSALSSN---GITLIQGPPGTGKTTTLASIIAQLLQRFKSRSADRGKKILVVSPSNAAVDNILERLKK 75 (236)
T ss_dssp ---HHHHHHHHHHCTSS---E-EEEE-STTSSHHHHHHHHHHHH-------HCCCSS-EEEEESSHHHHHHHHHHHHC
T ss_pred CCCHHHHHHHHHHHcCC---CCEEEECCCCCChHHHHHHHHHHhccchhhhhhhccccceeecCCchhHHHHHHHHHh
Confidence 47789999999988876 5 8999999999997766555443 35899999999999999988887
No 174
>KOG1513 consensus Nuclear helicase MOP-3/SNO (DEAD-box superfamily) [Transcription; Signal transduction mechanisms]
Probab=98.48 E-value=1.1e-06 Score=92.43 Aligned_cols=257 Identities=18% Similarity=0.163 Sum_probs=148.0
Q ss_pred CCCCCcHHHHHHHHHHHhC------CCCcce-EEEcCCCCcHHHH--HHHHHHhc--CCCEEEEEcChhhHHHHHHHHHH
Q 010367 22 PHAQPRPYQEKSLSKMFGN------GRARSG-IIVLPCGAGKSLV--GVSAACRI--KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~------~~~~~~-il~~~tG~GKTl~--~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
....|-..|.+|+-...+. .+.|.| +|-+..|.||-.+ ++.+=..+ +++.||+.-+..|-..-.+.++.
T Consensus 261 ~sg~lSALQLEav~YAcQ~He~llPsG~RaGfLiGDGAGVGKGRTvAgiIfeNyLkGRKrAlW~SVSsDLKfDAERDL~D 340 (1300)
T KOG1513|consen 261 DSGHLSALQLEAVTYACQAHEVLLPSGQRAGFLIGDGAGVGKGRTVAGIIFENYLKGRKRALWFSVSSDLKFDAERDLRD 340 (1300)
T ss_pred cccchhHHHHHHHHHHHhhhhhcCCCCccceeeeccCcccCCCceeEEEEehhhhcccceeEEEEeccccccchhhchhh
Confidence 4456788899999754321 122344 4445566666555 44443444 46899999999999888888887
Q ss_pred hhCCCCCcEEEEcCC------ccccccCCCeEEEEchhhhhccCC-----CchhHHHHHHHHhcCCccEEEEcCCCCCCc
Q 010367 91 WSTIQDDQICRFTSD------SKERFRGNAGVVVTTYNMVAFGGK-----RSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (512)
Q Consensus 91 ~~~~~~~~v~~~~~~------~~~~~~~~~~Ivv~T~~~l~~~~~-----r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~ 159 (512)
. +.+...|..++-- .++.-.-..+|+++||..|..... .......+++|+....-++||+||||..++
T Consensus 341 i-gA~~I~V~alnK~KYakIss~en~n~krGViFaTYtaLIGEs~~~~~kyrtR~rQllqW~Ge~feGvIvfDECHkAKN 419 (1300)
T KOG1513|consen 341 I-GATGIAVHALNKFKYAKISSKENTNTKRGVIFATYTALIGESQGKGGKYRTRFRQLLQWCGEDFEGVIVFDECHKAKN 419 (1300)
T ss_pred c-CCCCccceehhhcccccccccccCCccceeEEEeeHhhhhhccccCchHHHHHHHHHHHhhhccceeEEehhhhhhcc
Confidence 5 3333333222211 111112346799999999875422 222456777888766668999999999886
Q ss_pred h-------------HHHHHHHhcccceEEEEcccCCCCcchHhhhH--hhhCC-------------------ceeeecHH
Q 010367 160 H-------------MFRKVISLTKSHCKLGLTATLVREDERITDLN--FLIGP-------------------KLYEANWL 205 (512)
Q Consensus 160 ~-------------~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~--~l~gp-------------------~~~~~~~~ 205 (512)
- +.-.+-+.++..+++.-|||-..+......+. -+.|+ -..+.-.+
T Consensus 420 L~p~~~~k~TKtG~tVLdLQk~LP~ARVVYASATGAsEPrNMaYM~RLGlWGegtaf~eF~eFi~AvEkRGvGAMEIVAM 499 (1300)
T KOG1513|consen 420 LVPTAGAKSTKTGKTVLDLQKKLPNARVVYASATGASEPRNMAYMVRLGLWGEGTAFPEFEEFIHAVEKRGVGAMEIVAM 499 (1300)
T ss_pred cccccCCCcCcccHhHHHHHHhCCCceEEEeeccCCCCcchhhhhhhhccccCCCcCccHHHHHHHHHhcCCceeeeeeh
Confidence 1 22334455677789999999654332221111 11222 23344444
Q ss_pred HHHhCC-Ccc------cceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCH
Q 010367 206 DLVKGG-FIA------NVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNL 278 (512)
Q Consensus 206 ~l~~~~-~l~------~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~ 278 (512)
|+...| ||+ .+.+....++++++|...|-. ...++....+||+....++.... +- +-.+++++-
T Consensus 500 DMK~rGmYiARQLSFkgVsFrieEv~ls~eF~k~Yn~------a~~LW~ea~~kFq~a~e~m~~E~--R~-~Kt~wgQFW 570 (1300)
T KOG1513|consen 500 DMKLRGMYIARQLSFKGVSFRIEEVPLSKEFRKVYNR------AAELWAEALNKFQQAAELMDLES--RT-CKTLWGQFW 570 (1300)
T ss_pred hhhhhhhhhhhhccccCceEEEEecccCHHHHHHHHH------HHHHHHHHHHHHHHHHHHhhhHH--HH-hhhHHHHhH
Confidence 444443 222 456667778999998777652 22344444556666666654332 21 224556555
Q ss_pred HHHHHHHHHh
Q 010367 279 FALTEYAMKL 288 (512)
Q Consensus 279 ~~~~~l~~~L 288 (512)
..-+.+.++|
T Consensus 571 saHQRFFKyL 580 (1300)
T KOG1513|consen 571 SAHQRFFKYL 580 (1300)
T ss_pred HHHHHHHHHH
Confidence 5555555544
No 175
>PF02562 PhoH: PhoH-like protein; InterPro: IPR003714 PhoH is a cytoplasmic protein and predicted ATPase that is induced by phosphate starvation and belongings to the phosphate regulon (pho) in Escherichia coli [].; GO: 0005524 ATP binding; PDB: 3B85_A.
Probab=98.43 E-value=9e-07 Score=81.68 Aligned_cols=136 Identities=13% Similarity=0.171 Sum_probs=72.6
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
..+.|..+++.++... -.++.+|.|+|||+.+++.+... ..+++|+-|.... .++ .|+-|....
T Consensus 5 ~~~~Q~~~~~al~~~~---~v~~~G~AGTGKT~LA~a~Al~~v~~g~~~kiii~Rp~v~~-~~~-------lGflpG~~~ 73 (205)
T PF02562_consen 5 KNEEQKFALDALLNND---LVIVNGPAGTGKTFLALAAALELVKEGEYDKIIITRPPVEA-GED-------LGFLPGDLE 73 (205)
T ss_dssp -SHHHHHHHHHHHH-S---EEEEE--TTSSTTHHHHHHHHHHHHTTS-SEEEEEE-S--T-T-----------SS-----
T ss_pred CCHHHHHHHHHHHhCC---eEEEECCCCCcHHHHHHHHHHHHHHhCCCcEEEEEecCCCC-ccc-------cccCCCCHH
Confidence 4578999999999665 78889999999999999888654 2467777776652 111 111111100
Q ss_pred E---------------E-cCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHH
Q 010367 101 R---------------F-TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK 164 (512)
Q Consensus 101 ~---------------~-~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~ 164 (512)
. + ....-+.+.....|-+.....+... .-+..+||+|||+.+.....+.
T Consensus 74 eK~~p~~~p~~d~l~~~~~~~~~~~~~~~~~Ie~~~~~~iRGr---------------t~~~~~iIvDEaQN~t~~~~k~ 138 (205)
T PF02562_consen 74 EKMEPYLRPIYDALEELFGKEKLEELIQNGKIEIEPLAFIRGR---------------TFDNAFIIVDEAQNLTPEELKM 138 (205)
T ss_dssp ----TTTHHHHHHHTTTS-TTCHHHHHHTTSEEEEEGGGGTT-----------------B-SEEEEE-SGGG--HHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhChHhHHHHhhcCeEEEEehhhhcCc---------------cccceEEEEecccCCCHHHHHH
Confidence 0 0 0001111123344666655544421 0234799999999999999999
Q ss_pred HHHhcccceEEEEcccCCCCcch
Q 010367 165 VISLTKSHCKLGLTATLVREDER 187 (512)
Q Consensus 165 ~l~~~~~~~~l~LTATp~~~~~~ 187 (512)
++..+...+++.++|-|.+.|..
T Consensus 139 ilTR~g~~skii~~GD~~Q~D~~ 161 (205)
T PF02562_consen 139 ILTRIGEGSKIIITGDPSQIDLP 161 (205)
T ss_dssp HHTTB-TT-EEEEEE--------
T ss_pred HHcccCCCcEEEEecCceeecCC
Confidence 99999999999999999876654
No 176
>PF13604 AAA_30: AAA domain; PDB: 1W36_G 3K70_G 3UPU_B 3GPL_A 3E1S_A 3GP8_A.
Probab=98.38 E-value=4.1e-06 Score=77.66 Aligned_cols=128 Identities=17% Similarity=0.233 Sum_probs=77.8
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
+|.+.|++++..++.++. +-.+|.++.|+|||.+...++. ..+.++++++||...+....+. .+++
T Consensus 1 ~L~~~Q~~a~~~~l~~~~-~~~~l~G~aGtGKT~~l~~~~~~~~~~g~~v~~~apT~~Aa~~L~~~----~~~~------ 69 (196)
T PF13604_consen 1 TLNEEQREAVRAILTSGD-RVSVLQGPAGTGKTTLLKALAEALEAAGKRVIGLAPTNKAAKELREK----TGIE------ 69 (196)
T ss_dssp -S-HHHHHHHHHHHHCTC-SEEEEEESTTSTHHHHHHHHHHHHHHTT--EEEEESSHHHHHHHHHH----HTS-------
T ss_pred CCCHHHHHHHHHHHhcCC-eEEEEEECCCCCHHHHHHHHHHHHHhCCCeEEEECCcHHHHHHHHHh----hCcc------
Confidence 477899999999987642 3577889999999988655443 3357999999999866654443 2221
Q ss_pred EcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhccc-ceEEEEccc
Q 010367 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKLGLTAT 180 (512)
Q Consensus 102 ~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~-~~~l~LTAT 180 (512)
..|...+.......... ........+++|||||-.+....+..++..+.. ..++.|.|-
T Consensus 70 ----------------a~Ti~~~l~~~~~~~~~----~~~~~~~~~vliVDEasmv~~~~~~~ll~~~~~~~~klilvGD 129 (196)
T PF13604_consen 70 ----------------AQTIHSFLYRIPNGDDE----GRPELPKKDVLIVDEASMVDSRQLARLLRLAKKSGAKLILVGD 129 (196)
T ss_dssp ----------------EEEHHHHTTEECCEECC----SSCC-TSTSEEEESSGGG-BHHHHHHHHHHS-T-T-EEEEEE-
T ss_pred ----------------hhhHHHHHhcCCccccc----ccccCCcccEEEEecccccCHHHHHHHHHHHHhcCCEEEEECC
Confidence 11222221111000000 000013557999999999999999988888766 578888888
Q ss_pred CCC
Q 010367 181 LVR 183 (512)
Q Consensus 181 p~~ 183 (512)
|.+
T Consensus 130 ~~Q 132 (196)
T PF13604_consen 130 PNQ 132 (196)
T ss_dssp TTS
T ss_pred cch
Confidence 864
No 177
>PF07517 SecA_DEAD: SecA DEAD-like domain; InterPro: IPR011115 SecA protein binds to the plasma membrane where it interacts with proOmpA to support translocation of proOmpA through the membrane. SecA protein achieves this translocation, in association with SecY protein, in an ATP-dependent manner [,]. This domain represents the N-terminal ATP-dependent helicase domain, which is related to the IPR0011545 from INTERPRO.; GO: 0005524 ATP binding, 0017038 protein import, 0016020 membrane; PDB: 1NL3_B 1NKT_B 3DIN_B 3JUX_A 2FSG_B 2VDA_A 2FSH_A 2FSF_A 2FSI_A 3BXZ_A ....
Probab=98.22 E-value=2.8e-06 Score=81.67 Aligned_cols=126 Identities=19% Similarity=0.176 Sum_probs=74.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHH---HHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWA---FQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~---~~~~~~~~~~~~ 97 (512)
..|++-|.-+.-.+. . +-|.-+.||=|||+++..++.. .+++|-|++.+..|+..=. ..|-+++|+
T Consensus 76 ~~p~~vQll~~l~L~-~----G~laEm~TGEGKTli~~l~a~~~AL~G~~V~vvT~NdyLA~RD~~~~~~~y~~LGl--- 147 (266)
T PF07517_consen 76 LRPYDVQLLGALALH-K----GRLAEMKTGEGKTLIAALPAALNALQGKGVHVVTSNDYLAKRDAEEMRPFYEFLGL--- 147 (266)
T ss_dssp ----HHHHHHHHHHH-T----TSEEEESTTSHHHHHHHHHHHHHHTTSS-EEEEESSHHHHHHHHHHHHHHHHHTT----
T ss_pred CcccHHHHhhhhhcc-c----ceeEEecCCCCcHHHHHHHHHHHHHhcCCcEEEeccHHHhhccHHHHHHHHHHhhh---
Confidence 455666776665443 2 3499999999999997666532 3678999999999988644 444455555
Q ss_pred cEEEEcCCcccc---ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 98 QICRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 98 ~v~~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
.++...++.... ..-.++|+.+|...+....-|.+.... ......+.+.++|||||+.+.
T Consensus 148 sv~~~~~~~~~~~r~~~Y~~dI~Y~t~~~~~fD~Lrd~~~~~-~~~~~~r~~~~~ivDEvDs~L 210 (266)
T PF07517_consen 148 SVGIITSDMSSEERREAYAADIVYGTNSEFGFDYLRDNLALS-KNEQVQRGFDFAIVDEVDSIL 210 (266)
T ss_dssp -EEEEETTTEHHHHHHHHHSSEEEEEHHHHHHHHHHHTT-SS-GGG--SSSSSEEEECTHHHHT
T ss_pred ccccCccccCHHHHHHHHhCcccccccchhhHHHHHHHHhhc-cchhccCCCCEEEEeccceEE
Confidence 566666654321 123467999998877653111100000 001113678899999998764
No 178
>PRK10536 hypothetical protein; Provisional
Probab=98.14 E-value=4.7e-06 Score=79.13 Aligned_cols=149 Identities=13% Similarity=0.103 Sum_probs=85.5
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c-CC---CEEEEEcChhhHH-------HHHHHH
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-KK---SCLCLATNAVSVD-------QWAFQF 88 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-~~---~~Lvl~P~~~L~~-------Qw~~~~ 88 (512)
.+.......|...+..+..+. -.++.+|+|+|||+.+.+++.. + .+ +++|.=|.....+ ...+.+
T Consensus 55 ~~i~p~n~~Q~~~l~al~~~~---lV~i~G~aGTGKT~La~a~a~~~l~~~~~~kIiI~RP~v~~ge~LGfLPG~~~eK~ 131 (262)
T PRK10536 55 SPILARNEAQAHYLKAIESKQ---LIFATGEAGCGKTWISAAKAAEALIHKDVDRIIVTRPVLQADEDLGFLPGDIAEKF 131 (262)
T ss_pred ccccCCCHHHHHHHHHHhcCC---eEEEECCCCCCHHHHHHHHHHHHHhcCCeeEEEEeCCCCCchhhhCcCCCCHHHHH
Confidence 333445678999888776643 7888899999999999888763 3 22 3444334432110 011112
Q ss_pred HHhhCCCCCcEEEEcCC-ccccc--cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHH
Q 010367 89 KLWSTIQDDQICRFTSD-SKERF--RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (512)
Q Consensus 89 ~~~~~~~~~~v~~~~~~-~~~~~--~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~ 165 (512)
.-|+..--..+..+.+. .-+.. .....|-|.....+... .-.-++||+|||+.+.......+
T Consensus 132 ~p~~~pi~D~L~~~~~~~~~~~~~~~~~~~Iei~~l~ymRGr---------------tl~~~~vIvDEaqn~~~~~~k~~ 196 (262)
T PRK10536 132 APYFRPVYDVLVRRLGASFMQYCLRPEIGKVEIAPFAYMRGR---------------TFENAVVILDEAQNVTAAQMKMF 196 (262)
T ss_pred HHHHHHHHHHHHHHhChHHHHHHHHhccCcEEEecHHHhcCC---------------cccCCEEEEechhcCCHHHHHHH
Confidence 22210000000000010 00000 11233555544433321 01237999999999999999999
Q ss_pred HHhcccceEEEEcccCCCCcch
Q 010367 166 ISLTKSHCKLGLTATLVREDER 187 (512)
Q Consensus 166 l~~~~~~~~l~LTATp~~~~~~ 187 (512)
+..+....++.++|-|.+.|..
T Consensus 197 ltR~g~~sk~v~~GD~~QiD~p 218 (262)
T PRK10536 197 LTRLGENVTVIVNGDITQCDLP 218 (262)
T ss_pred HhhcCCCCEEEEeCChhhccCC
Confidence 9999999999999999876643
No 179
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=98.14 E-value=8e-06 Score=90.08 Aligned_cols=64 Identities=22% Similarity=0.235 Sum_probs=49.8
Q ss_pred CCCCCcHHHHHHHHHH---HhCC---CCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHH
Q 010367 22 PHAQPRPYQEKSLSKM---FGNG---RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWA 85 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~---~~~~---~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~ 85 (512)
+.++.||-|.+-+..+ +.+. ....+++-+|||+|||+.++.++.. .+++++|=+.|..|-+|..
T Consensus 22 ~~~e~R~~Q~~M~~~V~~al~~~~~~~~~~lviEAgTGtGKTlaYLlPai~~A~~~~k~vVIST~T~~LQeQL~ 95 (697)
T PRK11747 22 PGFIPRAGQRQMIAEVAKTLAGEYLKDGRILVIEAGTGVGKTLSYLLAGIPIARAEKKKLVISTATVALQEQLV 95 (697)
T ss_pred CCCCcCHHHHHHHHHHHHHHhcccccccceEEEECCCCcchhHHHHHHHHHHHHHcCCeEEEEcCCHHHHHHHH
Confidence 4689999999966655 4442 1246889999999999998877643 4688999999999988864
No 180
>PF13401 AAA_22: AAA domain; PDB: 2QBY_B 1FNN_B 1W5T_A 1W5S_B.
Probab=98.05 E-value=2.9e-05 Score=66.71 Aligned_cols=111 Identities=19% Similarity=0.194 Sum_probs=65.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEE-cChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLA-TNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~-P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (512)
+.++|.+|+|+|||.++-.++... ..+++.+. |...-...+..++...++.+...
T Consensus 5 ~~~~i~G~~G~GKT~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~l~~~~~~---------------- 68 (131)
T PF13401_consen 5 RILVISGPPGSGKTTLIKRLARQLNAEAEIKNHPDVIYVNCPSSRTPRDFAQEILEALGLPLKS---------------- 68 (131)
T ss_dssp --EEEEE-TTSSHHHHHHHHHHHHHHHHHHCCCEEEEEEEHHHHSSHHHHHHHHHHHHT-SSSS----------------
T ss_pred cccEEEcCCCCCHHHHHHHHHHHhHHhhhccCCCcEEEEEeCCCCCHHHHHHHHHHHhCccccc----------------
Confidence 478999999999999988888765 33444333 43333455566666554433221
Q ss_pred eEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCC-CchHHHHHHHhc-ccceEEEEcccCC
Q 010367 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV-PAHMFRKVISLT-KSHCKLGLTATLV 182 (512)
Q Consensus 115 ~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~-~~~~~~~~l~~~-~~~~~l~LTATp~ 182 (512)
-.+...+ ...+.+.+......++||||+|++ ....+..+.... .....+.|+|||.
T Consensus 69 ---~~~~~~l---------~~~~~~~l~~~~~~~lviDe~~~l~~~~~l~~l~~l~~~~~~~vvl~G~~~ 126 (131)
T PF13401_consen 69 ---RQTSDEL---------RSLLIDALDRRRVVLLVIDEADHLFSDEFLEFLRSLLNESNIKVVLVGTPE 126 (131)
T ss_dssp ---TS-HHHH---------HHHHHHHHHHCTEEEEEEETTHHHHTHHHHHHHHHHTCSCBEEEEEEESST
T ss_pred ---cCCHHHH---------HHHHHHHHHhcCCeEEEEeChHhcCCHHHHHHHHHHHhCCCCeEEEEEChh
Confidence 0111111 123344554455579999999998 755555544433 3457799999993
No 181
>KOG1803 consensus DNA helicase [Replication, recombination and repair]
Probab=98.03 E-value=1.5e-05 Score=82.50 Aligned_cols=65 Identities=26% Similarity=0.245 Sum_probs=54.3
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
...|-+-|+.|+.....+. .-.+|.+|+|+|||.+-..++..+ ++++||.+||.+.+++..+.+.
T Consensus 183 ~~~ln~SQk~Av~~~~~~k--~l~~I~GPPGTGKT~TlvEiI~qlvk~~k~VLVcaPSn~AVdNiverl~ 250 (649)
T KOG1803|consen 183 NKNLNSSQKAAVSFAINNK--DLLIIHGPPGTGKTRTLVEIISQLVKQKKRVLVCAPSNVAVDNIVERLT 250 (649)
T ss_pred CccccHHHHHHHHHHhccC--CceEeeCCCCCCceeeHHHHHHHHHHcCCeEEEEcCchHHHHHHHHHhc
Confidence 3567888999999877764 378999999999999988777654 6899999999999999888644
No 182
>KOG1802 consensus RNA helicase nonsense mRNA reducing factor (pNORF1) [RNA processing and modification]
Probab=97.97 E-value=2.1e-05 Score=81.90 Aligned_cols=65 Identities=18% Similarity=0.257 Sum_probs=57.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
-+|..-|..|++..+++. -.+|.+|+|+|||.+..+++.++ ..++||++|+...++|..+.+.+-
T Consensus 409 pkLN~SQ~~AV~~VL~rp---lsLIQGPPGTGKTvtsa~IVyhl~~~~~~~VLvcApSNiAVDqLaeKIh~t 477 (935)
T KOG1802|consen 409 PKLNASQSNAVKHVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQHAGPVLVCAPSNIAVDQLAEKIHKT 477 (935)
T ss_pred hhhchHHHHHHHHHHcCC---ceeeecCCCCCceehhHHHHHHHHHhcCCceEEEcccchhHHHHHHHHHhc
Confidence 478889999999999987 78999999999999988777554 579999999999999999888764
No 183
>TIGR01448 recD_rel helicase, putative, RecD/TraA family. This model describes a family similar to RecD, the exodeoxyribonuclease V alpha chain of TIGR01447. Members of this family, however, are not found in a context of RecB and RecC and are longer by about 200 amino acids at the amino end. Chlamydia muridarum has both a member of this family and a RecD.
Probab=97.94 E-value=0.00014 Score=80.55 Aligned_cols=130 Identities=13% Similarity=0.106 Sum_probs=84.9
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH---HhcC--CCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~--~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
..+.|.+.|++|+..+..++ -.+|.++.|+|||.+.-.++ ...+ .++++++||...+... ..-++.+.
T Consensus 320 ~~~~l~~~Q~~Ai~~~~~~~---~~iitGgpGTGKTt~l~~i~~~~~~~~~~~~v~l~ApTg~AA~~L----~e~~g~~a 392 (720)
T TIGR01448 320 LRKGLSEEQKQALDTAIQHK---VVILTGGPGTGKTTITRAIIELAEELGGLLPVGLAAPTGRAAKRL----GEVTGLTA 392 (720)
T ss_pred cCCCCCHHHHHHHHHHHhCC---eEEEECCCCCCHHHHHHHHHHHHHHcCCCceEEEEeCchHHHHHH----HHhcCCcc
Confidence 35789999999999987654 78999999999998865444 3334 5788899998755533 32222221
Q ss_pred CcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEE
Q 010367 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLG 176 (512)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~ 176 (512)
.|...+........ .....+. ....+++|+|||+++....+..++..++...+|.
T Consensus 393 ----------------------~Tih~lL~~~~~~~-~~~~~~~--~~~~~llIvDEaSMvd~~~~~~Ll~~~~~~~rli 447 (720)
T TIGR01448 393 ----------------------STIHRLLGYGPDTF-RHNHLED--PIDCDLLIVDESSMMDTWLALSLLAALPDHARLL 447 (720)
T ss_pred ----------------------ccHHHHhhccCCcc-chhhhhc--cccCCEEEEeccccCCHHHHHHHHHhCCCCCEEE
Confidence 12222211100000 0000010 1457899999999999999999998888778888
Q ss_pred EcccCCC
Q 010367 177 LTATLVR 183 (512)
Q Consensus 177 LTATp~~ 183 (512)
|-|=|.+
T Consensus 448 lvGD~~Q 454 (720)
T TIGR01448 448 LVGDTDQ 454 (720)
T ss_pred EECcccc
Confidence 8887654
No 184
>TIGR01447 recD exodeoxyribonuclease V, alpha subunit. This family describes the exodeoxyribonuclease V alpha subunit, RecD. RecD is part of a RecBCD complex. A related family in the Gram-positive bacteria separates in a phylogenetic tree, has an additional N-terminal extension of about 200 residues, and is not supported as a member of a RecBCD complex by neighboring genes. The related family is consequently described by a different model.
Probab=97.91 E-value=6.7e-05 Score=80.74 Aligned_cols=141 Identities=12% Similarity=0.061 Sum_probs=90.4
Q ss_pred HHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---C-----CCEEEEEcChhhHHHHHHHHHHhhC-CCCCc
Q 010367 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K-----KSCLCLATNAVSVDQWAFQFKLWST-IQDDQ 98 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~-~~~~~ 98 (512)
++|+.|+...+.+. -.+|.+++|+|||.+...++..+ . .++++.+||--.+....+.+..... ++.
T Consensus 148 ~~Qk~A~~~al~~~---~~vitGgpGTGKTt~v~~ll~~l~~~~~~~~~~~I~l~APTGkAA~rL~e~~~~~~~~l~~-- 222 (586)
T TIGR01447 148 NWQKVAVALALKSN---FSLITGGPGTGKTTTVARLLLALVKQSPKQGKLRIALAAPTGKAAARLAESLRKAVKNLAA-- 222 (586)
T ss_pred HHHHHHHHHHhhCC---eEEEEcCCCCCHHHHHHHHHHHHHHhccccCCCcEEEECCcHHHHHHHHHHHHhhhccccc--
Confidence 79999999988875 89999999999999866554322 1 3689999998777776665554211 110
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEc
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LT 178 (512)
... ......+-..|...+........... ...-....++++|||||-++....+..++..++...+|.|.
T Consensus 223 ----~~~----~~~~~~~~a~TiHrlLg~~~~~~~~~--~~~~~~l~~dvlIiDEaSMvd~~l~~~ll~al~~~~rlIlv 292 (586)
T TIGR01447 223 ----AEA----LIAALPSEAVTIHRLLGIKPDTKRFR--HHERNPLPLDVLVVDEASMVDLPLMAKLLKALPPNTKLILL 292 (586)
T ss_pred ----chh----hhhccccccchhhhhhcccCCcchhh--hcccCCCcccEEEEcccccCCHHHHHHHHHhcCCCCEEEEE
Confidence 000 00011122455554443321100000 00011236799999999999999999999988888889998
Q ss_pred ccCCC
Q 010367 179 ATLVR 183 (512)
Q Consensus 179 ATp~~ 183 (512)
|=+.+
T Consensus 293 GD~~Q 297 (586)
T TIGR01447 293 GDKNQ 297 (586)
T ss_pred CChhh
Confidence 87654
No 185
>PF13307 Helicase_C_2: Helicase C-terminal domain; PDB: 4A15_A 2VSF_A 3CRV_A 3CRW_1 2VL7_A.
Probab=97.91 E-value=7.4e-05 Score=67.38 Aligned_cols=92 Identities=18% Similarity=0.308 Sum_probs=63.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhCC-------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeC--CCcccccCcc--cc
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLRK-------PMIYGATSHVERTKILQAFKCSRDLNTIFLSK--VGDNSIDIPE--AN 334 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~~-------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~--~~~~GlDlp~--~~ 334 (512)
..+..+|||+++-..++.+.+.+.. .++.- ...++.+++++|+.+ +-.+|+++. ...+|+|+|+ +.
T Consensus 7 ~~~g~~lv~f~Sy~~l~~~~~~~~~~~~~~~~~v~~q--~~~~~~~~l~~~~~~-~~~il~~v~~g~~~EGiD~~~~~~r 83 (167)
T PF13307_consen 7 AVPGGVLVFFPSYRRLEKVYERLKERLEEKGIPVFVQ--GSKSRDELLEEFKRG-EGAILLAVAGGSFSEGIDFPGDLLR 83 (167)
T ss_dssp CCSSEEEEEESSHHHHHHHHTT-TSS-E-ETSCEEES--TCCHHHHHHHHHCCS-SSEEEEEETTSCCGSSS--ECESEE
T ss_pred cCCCCEEEEeCCHHHHHHHHHHHHhhcccccceeeec--CcchHHHHHHHHHhc-cCeEEEEEecccEEEeecCCCchhh
Confidence 4467999999999999999998853 23333 245788999999997 777899987 8999999996 55
Q ss_pred EEEEecCCCCCHH-----------------------------HHHHHhhcccccC
Q 010367 335 VIIQISSHAGSRR-----------------------------QEAQRLGRILRAK 360 (512)
Q Consensus 335 ~vI~~~~~~~s~~-----------------------------~~~Q~~GR~~R~g 360 (512)
+||+..-|+.++. ...|.+||+.|..
T Consensus 84 ~vii~glPfp~~~d~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~Qa~GR~iR~~ 138 (167)
T PF13307_consen 84 AVIIVGLPFPPPSDPLVQAKREYLDKQGKNPFRDWYLPPAIRKLKQAIGRLIRSE 138 (167)
T ss_dssp EEEEES-----TTCHHHHHHHHHHHHCCTTCHHHHTHHHHHHHHHHHHHCC--ST
T ss_pred eeeecCCCCCCCCCHHHHHHHHHHHHHhccchhhHhhHHHHHHHhhhcCcceecc
Confidence 7777544432221 1279999999977
No 186
>PF09848 DUF2075: Uncharacterized conserved protein (DUF2075); InterPro: IPR018647 This domain, found in putative ATP/GTP binding proteins, has no known function. It is found in some proteins described as Schlafen family members, which may have a role in hematopoeitic cell differentiation [].
Probab=97.90 E-value=4e-05 Score=77.94 Aligned_cols=90 Identities=13% Similarity=0.099 Sum_probs=60.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~ 119 (512)
-.+|.+..|+|||++++.++..+ +..++++|++..|.......+..-.. .......+.
T Consensus 3 v~~I~G~aGTGKTvla~~l~~~l~~~~~~~~~~~l~~n~~l~~~l~~~l~~~~~-----------------~~~~~~~~~ 65 (352)
T PF09848_consen 3 VILITGGAGTGKTVLALNLAKELQNSEEGKKVLYLCGNHPLRNKLREQLAKKYN-----------------PKLKKSDFR 65 (352)
T ss_pred EEEEEecCCcCHHHHHHHHHHHhhccccCCceEEEEecchHHHHHHHHHhhhcc-----------------cchhhhhhh
Confidence 46888999999999999999877 46899999999998887877776320 000112233
Q ss_pred chhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc
Q 010367 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA 159 (512)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~ 159 (512)
.+..+.+... ........+++|||||||++..
T Consensus 66 ~~~~~i~~~~--------~~~~~~~~~DviivDEAqrl~~ 97 (352)
T PF09848_consen 66 KPTSFINNYS--------ESDKEKNKYDVIIVDEAQRLRT 97 (352)
T ss_pred hhHHHHhhcc--------cccccCCcCCEEEEehhHhhhh
Confidence 3333322110 0011136789999999999987
No 187
>TIGR00376 DNA helicase, putative. The gene product may represent a DNA helicase. Eukaryotic members of this family have been characterized as binding certain single-stranded G-rich DNA sequences (GGGGT and GGGCT). A number of related proteins are characterized as helicases.
Probab=97.89 E-value=0.00015 Score=79.18 Aligned_cols=66 Identities=20% Similarity=0.145 Sum_probs=55.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..|-+.|.+|+..++.+. ...+|.+|+|+|||.+...++.. .+.++|+++|+...+++..+.+...
T Consensus 156 ~~ln~~Q~~Av~~~l~~~--~~~lI~GpPGTGKT~t~~~ii~~~~~~g~~VLv~a~sn~Avd~l~e~l~~~ 224 (637)
T TIGR00376 156 PNLNESQKEAVSFALSSK--DLFLIHGPPGTGKTRTLVELIRQLVKRGLRVLVTAPSNIAVDNLLERLALC 224 (637)
T ss_pred CCCCHHHHHHHHHHhcCC--CeEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEEcCcHHHHHHHHHHHHhC
Confidence 468899999999988763 27899999999999988777754 3579999999999999999888763
No 188
>PRK10875 recD exonuclease V subunit alpha; Provisional
Probab=97.82 E-value=9.5e-05 Score=79.79 Aligned_cols=144 Identities=13% Similarity=0.075 Sum_probs=90.8
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---C----CCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.-++|++|+...+.++ -.+|.+++|+|||.+...++..+ . .++++++||.-.+....+.+..-.. .
T Consensus 153 ~~d~Qk~Av~~a~~~~---~~vItGgpGTGKTt~v~~ll~~l~~~~~~~~~~i~l~APTgkAA~rL~e~~~~~~~----~ 225 (615)
T PRK10875 153 EVDWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQLADGERCRIRLAAPTGKAAARLTESLGKALR----Q 225 (615)
T ss_pred CCHHHHHHHHHHhcCC---eEEEEeCCCCCHHHHHHHHHHHHHHhcCCCCcEEEEECCcHHHHHHHHHHHHhhhh----c
Confidence 4589999999888765 78999999999999865554332 2 3588889999877766665543211 0
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEc
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLT 178 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LT 178 (512)
+. +....+. ....-..|...+........... ...-....++++||||+-++....+..++..++...+|.|-
T Consensus 226 ~~-~~~~~~~----~~~~~a~TiHrlLg~~~~~~~~~--~~~~~~l~~dvlIvDEaSMvd~~lm~~ll~al~~~~rlIlv 298 (615)
T PRK10875 226 LP-LTDEQKK----RIPEEASTLHRLLGAQPGSQRLR--YHAGNPLHLDVLVVDEASMVDLPMMARLIDALPPHARVIFL 298 (615)
T ss_pred cc-cchhhhh----cCCCchHHHHHHhCcCCCccchh--hccccCCCCCeEEEChHhcccHHHHHHHHHhcccCCEEEEe
Confidence 00 0011111 11122445554443321110000 00111235689999999999999999999999988899998
Q ss_pred ccCCC
Q 010367 179 ATLVR 183 (512)
Q Consensus 179 ATp~~ 183 (512)
|=+.+
T Consensus 299 GD~~Q 303 (615)
T PRK10875 299 GDRDQ 303 (615)
T ss_pred cchhh
Confidence 87654
No 189
>smart00488 DEXDc2 DEAD-like helicases superfamily.
Probab=97.81 E-value=7.6e-05 Score=73.52 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=52.7
Q ss_pred CCCCCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHHH----hcCC-----CEEEEEcChhhHHHHHHHHH
Q 010367 22 PHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~-----~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
+.+++||.|.+-+..+ +..+ ..+++.+|||+|||+.++.++. ..+. +++|.+++..+.+|-..+++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00488 5 FPYEPYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 4566799999977765 3444 3899999999999999887763 2233 79999999998888877777
Q ss_pred Hh
Q 010367 90 LW 91 (512)
Q Consensus 90 ~~ 91 (512)
+.
T Consensus 83 ~~ 84 (289)
T smart00488 83 KL 84 (289)
T ss_pred hc
Confidence 64
No 190
>smart00489 DEXDc3 DEAD-like helicases superfamily.
Probab=97.81 E-value=7.6e-05 Score=73.52 Aligned_cols=68 Identities=18% Similarity=0.331 Sum_probs=52.7
Q ss_pred CCCCCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHHH----hcCC-----CEEEEEcChhhHHHHHHHHH
Q 010367 22 PHAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKK-----SCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~-----~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
+.+++||.|.+-+..+ +..+ ..+++.+|||+|||+.++.++. ..+. +++|.+++..+.+|-..+++
T Consensus 5 FPy~~r~~Q~~~m~~v~~~~~~~--~~~~~eapTGtGKTl~~L~~al~~~~~~~~~~~~~kvi~~t~T~~~~~q~i~~l~ 82 (289)
T smart00489 5 FPYEPYPIQYEFMEELKRVLDRG--KIGILESPTGTGKTLSLLCLTLTWLRSFPERIQKIKLIYLSRTVSEIEKRLEELR 82 (289)
T ss_pred CCCCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCcchhHHHHHHHHHHHHhCcccccccceeEEeccHHHHHHHHHHHH
Confidence 4566799999977765 3444 3899999999999999887763 2233 79999999998888877777
Q ss_pred Hh
Q 010367 90 LW 91 (512)
Q Consensus 90 ~~ 91 (512)
+.
T Consensus 83 ~~ 84 (289)
T smart00489 83 KL 84 (289)
T ss_pred hc
Confidence 64
No 191
>PF12340 DUF3638: Protein of unknown function (DUF3638); InterPro: IPR022099 This domain family is found in eukaryotes, and is approximately 230 amino acids in length. There are two conserved sequence motifs: LLE and NMG.
Probab=97.81 E-value=0.00013 Score=68.19 Aligned_cols=142 Identities=15% Similarity=0.162 Sum_probs=89.1
Q ss_pred CccCCCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCC-EEEEEcChhhHHHHHHHHHHh
Q 010367 16 LNMELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKS-CLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 16 ~~~~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~-~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
+-+++...+.+||-|.+....|.+.....+.+..+-||.|||-+.+.+++.. +.+ +-++|| ++|..|....+...
T Consensus 14 Ll~E~e~~iliR~~Q~~ia~~mi~~~~~~n~v~QlnMGeGKTsVI~Pmla~~LAdg~~LvrviVp-k~Ll~q~~~~L~~~ 92 (229)
T PF12340_consen 14 LLFEIESNILIRPVQVEIAREMISPPSGKNSVMQLNMGEGKTSVIVPMLALALADGSRLVRVIVP-KALLEQMRQMLRSR 92 (229)
T ss_pred HHHHHHcCceeeHHHHHHHHHHhCCCCCCCeEeeecccCCccchHHHHHHHHHcCCCcEEEEEcC-HHHHHHHHHHHHHH
Confidence 4455677899999999999999986545688999999999999876555432 333 556666 55899998888765
Q ss_pred h-CCCCCcEEEEcCCcccc---------------ccCCCeEEEEchhhhhccC---------CCc---hhHHHHHHHHhc
Q 010367 92 S-TIQDDQICRFTSDSKER---------------FRGNAGVVVTTYNMVAFGG---------KRS---EESEKIIEEIRN 143 (512)
Q Consensus 92 ~-~~~~~~v~~~~~~~~~~---------------~~~~~~Ivv~T~~~l~~~~---------~r~---~~~~~~~~~l~~ 143 (512)
+ ++-...|..+.-+.... .....+|+++||+.+.... ... ....+...++.
T Consensus 93 lg~l~~r~i~~lpFsR~~~~~~~~~~~~~~l~~~~~~~~gill~~PEhilSf~L~~le~l~~~~~~~~~~l~~~q~~l~- 171 (229)
T PF12340_consen 93 LGGLLNRRIYHLPFSRSTPLTPETLEKIRQLLEECMRSGGILLATPEHILSFKLKGLERLQDGKPEEARELLKIQKWLD- 171 (229)
T ss_pred HHHHhCCeeEEecccCCCCCCHHHHHHHHHHHHHHHHcCCEEEeChHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHH-
Confidence 4 33333443332221110 1245679999999765531 010 11112222332
Q ss_pred CCccEEEEcCCCCCCch
Q 010367 144 REWGLLLMDEVHVVPAH 160 (512)
Q Consensus 144 ~~~~lvIiDEaH~~~~~ 160 (512)
+-.--|+||+|.+.+.
T Consensus 172 -~~~rdilDEsDe~L~~ 187 (229)
T PF12340_consen 172 -EHSRDILDESDEILSV 187 (229)
T ss_pred -hcCCeEeECchhccCc
Confidence 2344689999986654
No 192
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=97.80 E-value=2.5e-05 Score=86.82 Aligned_cols=110 Identities=20% Similarity=0.324 Sum_probs=87.2
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhC---CC-ceeCCCCHHHHHHHHHHhhCCCCccEEEE-eCCCcccccCccccEEEEec
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLR---KP-MIYGATSHVERTKILQAFKCSRDLNTIFL-SKVGDNSIDIPEANVIIQIS 340 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~---~~-~i~g~~~~~eR~~il~~F~~~~~~~vlv~-t~~~~~GlDlp~~~~vI~~~ 340 (512)
..-.++|||++....++.+...+. +. ...|++. .-...+..|+. +.+|.. ++.++-|+|+-+|.+|++.+
T Consensus 1219 ~~qekvIvfsqws~~ldV~e~~~~~N~I~~~~~~~t~--d~~dc~~~fk~---I~clll~~~~~~~GLNL~eA~Hvfl~e 1293 (1394)
T KOG0298|consen 1219 NEQEKVIVFSQWSVVLDVKELRYLMNLIKKQLDGETE--DFDDCIICFKS---IDCLLLFVSKGSKGLNLIEATHVFLVE 1293 (1394)
T ss_pred CcCceEEEEEehHHHHHHHHHHHHhhhhHhhhccCCc--chhhhhhhccc---ceEEEEEeccCcccccHHhhhhhheec
Confidence 345799999999998888877763 22 2344432 33455666765 666554 89999999999999999997
Q ss_pred CCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHH
Q 010367 341 SHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 341 ~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
+-- |+...+|++||+||+| |..+.++|.++-.+|+|+.+.
T Consensus 1294 PiL-N~~~E~QAigRvhRiG-----------Q~~pT~V~~fiv~~TvEe~Il 1333 (1394)
T KOG0298|consen 1294 PIL-NPGDEAQAIGRVHRIG-----------QKRPTFVHRFIVNETVEENIL 1333 (1394)
T ss_pred ccc-CchHHHhhhhhhhhcc-----------cccchhhhhhhhccchHHHHH
Confidence 655 9999999999999999 777899999999999999654
No 193
>COG2256 MGS1 ATPase related to the helicase subunit of the Holliday junction resolvase [DNA replication, recombination, and repair]
Probab=97.74 E-value=0.00025 Score=70.54 Aligned_cols=104 Identities=16% Similarity=0.127 Sum_probs=75.8
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccC
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (512)
.+..|+..+.-.+.|+++|+|+|||.++-.++...+..+.-+..+..-+.+.+..+++--
T Consensus 38 ~lrr~v~~~~l~SmIl~GPPG~GKTTlA~liA~~~~~~f~~~sAv~~gvkdlr~i~e~a~-------------------- 97 (436)
T COG2256 38 PLRRAVEAGHLHSMILWGPPGTGKTTLARLIAGTTNAAFEALSAVTSGVKDLREIIEEAR-------------------- 97 (436)
T ss_pred hHHHHHhcCCCceeEEECCCCCCHHHHHHHHHHhhCCceEEeccccccHHHHHHHHHHHH--------------------
Confidence 345778877777999999999999999999999888888877776665555555444320
Q ss_pred CCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcccCC
Q 010367 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 113 ~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~ 182 (512)
......+--++++||+|++.-.+-..++-.+-...++++-||-.
T Consensus 98 --------------------------~~~~~gr~tiLflDEIHRfnK~QQD~lLp~vE~G~iilIGATTE 141 (436)
T COG2256 98 --------------------------KNRLLGRRTILFLDEIHRFNKAQQDALLPHVENGTIILIGATTE 141 (436)
T ss_pred --------------------------HHHhcCCceEEEEehhhhcChhhhhhhhhhhcCCeEEEEeccCC
Confidence 00000112378999999998777777777777778888888864
No 194
>PF13871 Helicase_C_4: Helicase_C-like
Probab=97.64 E-value=0.00027 Score=68.15 Aligned_cols=88 Identities=22% Similarity=0.230 Sum_probs=65.8
Q ss_pred HHHHHHhhCCCCccEEEEeCCCcccccCccc--------cEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCce
Q 010367 303 TKILQAFKCSRDLNTIFLSKVGDNSIDIPEA--------NVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEY 374 (512)
Q Consensus 303 ~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~--------~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~ 374 (512)
....+.|++| +..|+|.|.++++|+.+..- .+-|.+..+| |....+|.+||+||.+|. .
T Consensus 51 ~~e~~~F~~g-~k~v~iis~AgstGiSlHAd~~~~nqr~Rv~i~le~pw-sad~aiQ~~GR~hRsnQ~-----------~ 117 (278)
T PF13871_consen 51 IAEKQAFMDG-EKDVAIISDAGSTGISLHADRRVKNQRRRVHITLELPW-SADKAIQQFGRTHRSNQV-----------S 117 (278)
T ss_pred HHHHHHHhCC-CceEEEEecccccccchhccccCCCCCceEEEEeeCCC-CHHHHHHHhccccccccc-----------c
Confidence 3567899998 89999999999999999732 2455566777 999999999999999953 2
Q ss_pred eEEEEE-EEeCCcHhhHHHHHHHHHHHhcCC
Q 010367 375 NAFFYS-LVSTDTQEMFYSTKRQQFLIDQGY 404 (512)
Q Consensus 375 ~~~~y~-lv~~~t~e~~~~~~r~~~l~~~g~ 404 (512)
.. .|. +++.-..|..++..-.+.|...|.
T Consensus 118 ~P-~y~~l~t~~~gE~Rfas~va~rL~sLgA 147 (278)
T PF13871_consen 118 AP-EYRFLVTDLPGERRFASTVARRLESLGA 147 (278)
T ss_pred CC-EEEEeecCCHHHHHHHHHHHHHHhhccc
Confidence 23 344 444445566777766777776664
No 195
>PF13245 AAA_19: Part of AAA domain
Probab=97.63 E-value=0.00016 Score=55.87 Aligned_cols=54 Identities=17% Similarity=0.244 Sum_probs=39.4
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEEcChhhHHHHHHHH
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
++...+.++ +-.+|.+|+|+|||.+.+..+..+ ++++||++|+...+++..+.+
T Consensus 2 av~~al~~~--~~~vv~g~pGtGKT~~~~~~i~~l~~~~~~~~~~vlv~a~t~~aa~~l~~rl 62 (76)
T PF13245_consen 2 AVRRALAGS--PLFVVQGPPGTGKTTTLAARIAELLAARADPGKRVLVLAPTRAAADELRERL 62 (76)
T ss_pred HHHHHHhhC--CeEEEECCCCCCHHHHHHHHHHHHHHHhcCCCCeEEEECCCHHHHHHHHHHH
Confidence 445444422 256679999999997776666433 568999999999888877777
No 196
>COG1875 NYN ribonuclease and ATPase of PhoH family domains [General function prediction only]
Probab=97.62 E-value=0.00018 Score=70.58 Aligned_cols=144 Identities=14% Similarity=0.199 Sum_probs=82.0
Q ss_pred HHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
-+|.-|+..++...- .-..+.++-|+|||+.|+++.... .++++|.=|+..+-+ +|+-
T Consensus 231 ~eQ~~ALdlLld~dI-~lV~L~G~AGtGKTlLALaAgleqv~e~~~y~KiiVtRp~vpvG~---------------dIGf 294 (436)
T COG1875 231 AEQRVALDLLLDDDI-DLVSLGGKAGTGKTLLALAAGLEQVLERKRYRKIIVTRPTVPVGE---------------DIGF 294 (436)
T ss_pred HHHHHHHHHhcCCCC-CeEEeeccCCccHhHHHHHHHHHHHHHHhhhceEEEecCCcCccc---------------ccCc
Confidence 368888887766531 245677899999999999887532 357777777665321 1111
Q ss_pred EcCCccccccCCCeEEEEchhhhhccCCCchhH-H----------HHHHHHhcC--CccEEEEcCCCCCCchHHHHHHHh
Q 010367 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEES-E----------KIIEEIRNR--EWGLLLMDEVHVVPAHMFRKVISL 168 (512)
Q Consensus 102 ~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~-~----------~~~~~l~~~--~~~lvIiDEaH~~~~~~~~~~l~~ 168 (512)
+-|...+++.....-+.-|-+.|.+..+....+ . ..+.+++.+ .-.+||+|||+.+.......++..
T Consensus 295 LPG~eEeKm~PWmq~i~DnLE~L~~~~~~~~~~l~~~l~~~~iev~alt~IRGRSl~~~FiIIDEaQNLTpheikTiltR 374 (436)
T COG1875 295 LPGTEEEKMGPWMQAIFDNLEVLFSPNEPGDRALEEILSRGRIEVEALTYIRGRSLPDSFIIIDEAQNLTPHELKTILTR 374 (436)
T ss_pred CCCchhhhccchHHHHHhHHHHHhcccccchHHHHHHHhccceeeeeeeeecccccccceEEEehhhccCHHHHHHHHHh
Confidence 112211111111111111111111111000000 0 001112122 225899999999999999999999
Q ss_pred cccceEEEEcccCCCCcch
Q 010367 169 TKSHCKLGLTATLVREDER 187 (512)
Q Consensus 169 ~~~~~~l~LTATp~~~~~~ 187 (512)
.....+|.||+-|.+-|..
T Consensus 375 ~G~GsKIVl~gd~aQiD~~ 393 (436)
T COG1875 375 AGEGSKIVLTGDPAQIDTP 393 (436)
T ss_pred ccCCCEEEEcCCHHHcCCc
Confidence 9999999999999876654
No 197
>cd00009 AAA The AAA+ (ATPases Associated with a wide variety of cellular Activities) superfamily represents an ancient group of ATPases belonging to the ASCE (for additional strand, catalytic E) division of the P-loop NTPase fold. The ASCE division also includes ABC, RecA-like, VirD4-like, PilT-like, and SF1/2 helicases. Members of the AAA+ ATPases function as molecular chaperons, ATPase subunits of proteases, helicases, or nucleic-acid stimulated ATPases. The AAA+ proteins contain several distinct features in addition to the conserved alpha-beta-alpha core domain structure and the Walker A and B motifs of the P-loop NTPases.
Probab=97.61 E-value=0.0012 Score=57.17 Aligned_cols=49 Identities=16% Similarity=0.217 Sum_probs=33.6
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcCh
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~ 78 (512)
+...+...+.....+..++.+|+|+|||..+..++... ..+++++....
T Consensus 6 ~~~~i~~~~~~~~~~~v~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~~~ 57 (151)
T cd00009 6 AIEALREALELPPPKNLLLYGPPGTGKTTLARAIANELFRPGAPFLYLNASD 57 (151)
T ss_pred HHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHhhcCCCCeEEEehhh
Confidence 44444444444333589999999999999888888776 55666665544
No 198
>PRK04296 thymidine kinase; Provisional
Probab=97.45 E-value=0.00043 Score=63.83 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=25.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (512)
-.++.+|+|+|||..++.++.+. +++++++-|
T Consensus 4 i~litG~~GsGKTT~~l~~~~~~~~~g~~v~i~k~ 38 (190)
T PRK04296 4 LEFIYGAMNSGKSTELLQRAYNYEERGMKVLVFKP 38 (190)
T ss_pred EEEEECCCCCHHHHHHHHHHHHHHHcCCeEEEEec
Confidence 35788999999999988887654 567888866
No 199
>PRK13342 recombination factor protein RarA; Reviewed
Probab=97.42 E-value=0.0013 Score=68.41 Aligned_cols=102 Identities=19% Similarity=0.155 Sum_probs=62.7
Q ss_pred HHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCC
Q 010367 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGN 113 (512)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~ 113 (512)
+..++.++...+.+|.+|+|+|||.++-.++...+..++.+.+...-+.+....+...
T Consensus 27 L~~~i~~~~~~~ilL~GppGtGKTtLA~~ia~~~~~~~~~l~a~~~~~~~ir~ii~~~---------------------- 84 (413)
T PRK13342 27 LRRMIEAGRLSSMILWGPPGTGKTTLARIIAGATDAPFEALSAVTSGVKDLREVIEEA---------------------- 84 (413)
T ss_pred HHHHHHcCCCceEEEECCCCCCHHHHHHHHHHHhCCCEEEEecccccHHHHHHHHHHH----------------------
Confidence 6667777666789999999999999998888877666555544322111111111100
Q ss_pred CeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcccC
Q 010367 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATL 181 (512)
Q Consensus 114 ~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTATp 181 (512)
..........++++||+|++.......++..+....++.+.+|.
T Consensus 85 ------------------------~~~~~~g~~~vL~IDEi~~l~~~~q~~LL~~le~~~iilI~att 128 (413)
T PRK13342 85 ------------------------RQRRSAGRRTILFIDEIHRFNKAQQDALLPHVEDGTITLIGATT 128 (413)
T ss_pred ------------------------HHhhhcCCceEEEEechhhhCHHHHHHHHHHhhcCcEEEEEeCC
Confidence 00001124579999999999866555556655555555555554
No 200
>PRK06526 transposase; Provisional
Probab=97.41 E-value=0.00066 Score=65.46 Aligned_cols=96 Identities=17% Similarity=0.293 Sum_probs=55.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
.+.++++|+|+|||..+.+++.. .+.+++++. +.+|.+++..... . .+
T Consensus 99 ~nlll~Gp~GtGKThLa~al~~~a~~~g~~v~f~t-----~~~l~~~l~~~~~----------~--------------~~ 149 (254)
T PRK06526 99 ENVVFLGPPGTGKTHLAIGLGIRACQAGHRVLFAT-----AAQWVARLAAAHH----------A--------------GR 149 (254)
T ss_pred ceEEEEeCCCCchHHHHHHHHHHHHHCCCchhhhh-----HHHHHHHHHHHHh----------c--------------Cc
Confidence 48999999999999998877643 345665543 2345555543100 0 01
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHH-hcccceEEEEcccCCC
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVIS-LTKSHCKLGLTATLVR 183 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~-~~~~~~~l~LTATp~~ 183 (512)
+ ...+..+ ..++++||||+|..+.. .+..++. .......|..|..|..
T Consensus 150 ~-------------~~~l~~l--~~~dlLIIDD~g~~~~~~~~~~~L~~li~~r~~~~s~IitSn~~~~ 203 (254)
T PRK06526 150 L-------------QAELVKL--GRYPLLIVDEVGYIPFEPEAANLFFQLVSSRYERASLIVTSNKPFG 203 (254)
T ss_pred H-------------HHHHHHh--ccCCEEEEcccccCCCCHHHHHHHHHHHHHHHhcCCEEEEcCCCHH
Confidence 1 1112233 46789999999998743 2233332 2233456777777753
No 201
>KOG0921 consensus Dosage compensation complex, subunit MLE [Transcription]
Probab=97.35 E-value=0.0016 Score=70.54 Aligned_cols=300 Identities=13% Similarity=0.084 Sum_probs=149.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc-----C---CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccccc-CCCe
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI-----K---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR-GNAG 115 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~-~~~~ 115 (512)
-.+|.+.||+|||......+... . ..+.+--|++....-..+.|.+--.-...+++.+.-.....++ ....
T Consensus 395 v~~I~getgcgk~tq~aq~iLe~~~~ns~g~~~na~v~qprrisaisiaerva~er~e~~g~tvgy~vRf~Sa~prpyg~ 474 (1282)
T KOG0921|consen 395 VVIIKGETGCGKSTQVAQFLLESFLENSNGASFNAVVSQPRRISAISLAERVANERGEEVGETCGYNVRFDSATPRPYGS 474 (1282)
T ss_pred eeeEeecccccchhHHHHHHHHHHhhccccccccceeccccccchHHHHHHHHHhhHHhhcccccccccccccccccccc
Confidence 78999999999999977766442 1 2455555777555555555554211111123333222221122 2345
Q ss_pred EEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHHHhcc----cceEEEEcccCCCCcchHh
Q 010367 116 VVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTK----SHCKLGLTATLVREDERIT 189 (512)
Q Consensus 116 Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~~----~~~~l~LTATp~~~~~~~~ 189 (512)
|..+|-+.+.... ..-+ ....++|+||.|..-.. -...++..+. .-+++++|||... +..
T Consensus 475 i~fctvgvllr~~---------e~gl--rg~sh~i~deiherdv~~dfll~~lr~m~~ty~dl~v~lmsatIdT--d~f- 540 (1282)
T KOG0921|consen 475 IMFCTVGVLLRMM---------ENGL--RGISHVIIDEIHERDVDTDFVLIVLREMISTYRDLRVVLMSATIDT--DLF- 540 (1282)
T ss_pred eeeeccchhhhhh---------hhcc--cccccccchhhhhhccchHHHHHHHHhhhccchhhhhhhhhcccch--hhh-
Confidence 7888888775432 1122 56789999999987643 2333344332 3356888998742 111
Q ss_pred hhHhhhCC--c--eeee--cHHHHHhCCCcccce------eEEEEcCCCHHH---HH---H-HHHh-hchHHHHH---Hh
Q 010367 190 DLNFLIGP--K--LYEA--NWLDLVKGGFIANVQ------CAEVWCPMTKEF---FS---E-YLKK-ENSKKKQA---LY 246 (512)
Q Consensus 190 ~l~~l~gp--~--~~~~--~~~~l~~~~~l~~~~------~~~~~~~~~~~~---~~---~-~l~~-~~~~~~~~---~~ 246 (512)
..+++. . ++.. +........++.+.+ .....+.++.+. .. + +-.. +....... .+
T Consensus 541 --~~~f~~~p~~~~~grt~pvq~F~led~~~~~~~vp~~~~~~k~k~~~~~~~~~~ddK~~n~n~~~dd~~~~~~~~am~ 618 (1282)
T KOG0921|consen 541 --TNFFSSIPDVTVHGRTFPVQSFFLEDIIQMTQFVPSEPSQKKRKKDDDEEDEEVDDKGRNMNILCDPSYNESTRTAMS 618 (1282)
T ss_pred --hhhhccccceeeccccccHHHHHHHHhhhhhhccCCCcCccchhhcccccCchhhhcccccccccChhhcchhhhhhh
Confidence 111110 0 0000 000000000000000 000000000000 00 0 0000 00000000 00
Q ss_pred hc--CcchHHHHHHHHHHhhh-cCCCeEEEEecCHHHHHHHHHHhC------------CCceeCCCCHHHHHHHHHHhhC
Q 010367 247 VM--NPNKFRACEFLIRFHEQ-QRGDKIIVFADNLFALTEYAMKLR------------KPMIYGATSHVERTKILQAFKC 311 (512)
Q Consensus 247 ~~--~~~k~~~l~~ll~~~~~-~~g~k~iVf~~~~~~~~~l~~~L~------------~~~i~g~~~~~eR~~il~~F~~ 311 (512)
.. ...-+.+++.++.+... .-..-++||-.--..+-.+...|- +.-.|......+..++.+....
T Consensus 619 ~~se~d~~f~l~Eal~~~i~s~~i~gailvflpgwa~i~~L~~~ll~~~~fg~~~~y~ilp~Hsq~~~~eqrkvf~~~p~ 698 (1282)
T KOG0921|consen 619 RLSEKDIPFGLIEALLNDIASRNIDGAVLVFLPGWAEIMTLCNRLLEHQEFGQANKYEILPLHSQLTSQEQRKVFEPVPE 698 (1282)
T ss_pred cchhhcchhHHHHHHHhhhcccCCccceeeecCchHHhhhhhhhhhhhhhhccchhcccccchhhcccHhhhhccCcccc
Confidence 00 01124566666665541 123467888877777777766661 1225666666666677666666
Q ss_pred CCCccEEEEeCCCcccccCccccEEEE-----------------ecCCCCCHHHHHHHhhcccccCC
Q 010367 312 SRDLNTIFLSKVGDNSIDIPEANVIIQ-----------------ISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 312 ~~~~~vlv~t~~~~~GlDlp~~~~vI~-----------------~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+ ..++|+.|.+..+.+.+-++..||. +.-.|.|....+||-||++|.-+
T Consensus 699 g-v~kii~stniaetsiTidd~v~vid~cka~~~~~~s~nn~~~~Atvw~sktn~eqr~gr~grvR~ 764 (1282)
T KOG0921|consen 699 G-VTKIILSTNIAETSITIDDVVYVIDSCKAKEKLFTSHNNMTHYATVWASKTNLEQRKGRAGRVRP 764 (1282)
T ss_pred c-ccccccccceeeEeeeecceeEEEeeeeeeeeeeccccceeeeeeecccccchHhhcccCceecc
Confidence 5 6778888888888888776544443 22334577788999999998774
No 202
>PRK08181 transposase; Validated
Probab=97.29 E-value=0.0019 Score=62.62 Aligned_cols=54 Identities=17% Similarity=0.145 Sum_probs=35.1
Q ss_pred CcHHHHHHHHH---HHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHH
Q 010367 26 PRPYQEKSLSK---MFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD 82 (512)
Q Consensus 26 Lr~yQ~~al~~---~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~ 82 (512)
+.+-|..++.. +...+ .+.++++|+|+|||..+.+++. ..+.+++++. ...|+.
T Consensus 88 ~~~~~~~~L~~~~~~~~~~--~nlll~Gp~GtGKTHLa~Aia~~a~~~g~~v~f~~-~~~L~~ 147 (269)
T PRK08181 88 VSKAQVMAIAAGDSWLAKG--ANLLLFGPPGGGKSHLAAAIGLALIENGWRVLFTR-TTDLVQ 147 (269)
T ss_pred CCHHHHHHHHHHHHHHhcC--ceEEEEecCCCcHHHHHHHHHHHHHHcCCceeeee-HHHHHH
Confidence 44567766653 44443 4899999999999998877764 3345665554 333444
No 203
>PF06862 DUF1253: Protein of unknown function (DUF1253); InterPro: IPR010678 This family is defined by a C-terminal region of approximately 500 residues, Digestive organ expansion factor (DEF) is thought to Regulate the p53 pathway to control the expansion growth of digestive organs and is required for the expansion growth of intestine, liver and exocrine pancreas, but not endocrine pancreas [, ].; GO: 0005634 nucleus
Probab=97.29 E-value=0.012 Score=60.71 Aligned_cols=93 Identities=11% Similarity=0.096 Sum_probs=72.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhC---CC--ceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc--ccccCccccEEEE
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLR---KP--MIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD--NSIDIPEANVIIQ 338 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~---~~--~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~--~GlDlp~~~~vI~ 338 (512)
.....+|||+++=..--.+-++|+ +. .++--++..+-.+.-..|.+| +.++|+.|.-.- +=..+.++..||+
T Consensus 298 ~~~~~~LIfIPSYfDfVRlRN~lk~~~~sF~~i~EYts~~~isRAR~~F~~G-~~~iLL~TER~HFfrRy~irGi~~viF 376 (442)
T PF06862_consen 298 SKMSGTLIFIPSYFDFVRLRNYLKKENISFVQISEYTSNSDISRARSQFFHG-RKPILLYTERFHFFRRYRIRGIRHVIF 376 (442)
T ss_pred cCCCcEEEEecchhhhHHHHHHHHhcCCeEEEecccCCHHHHHHHHHHHHcC-CceEEEEEhHHhhhhhceecCCcEEEE
Confidence 456789999999887777777774 22 477788888888999999998 899999984332 5677888999999
Q ss_pred ecCCCCCHHHHHHHhhcccccC
Q 010367 339 ISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 339 ~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
|.+|. +|.-|...+.-.....
T Consensus 377 Y~~P~-~p~fY~El~n~~~~~~ 397 (442)
T PF06862_consen 377 YGPPE-NPQFYSELLNMLDESS 397 (442)
T ss_pred ECCCC-ChhHHHHHHhhhcccc
Confidence 98776 8988887776555444
No 204
>TIGR03015 pepcterm_ATPase putative secretion ATPase, PEP-CTERM locus subfamily. Members of this protein are marked as probable ATPases by the nucleotide binding P-loop motif GXXGXGKTT, a motif DEAQ similar to the DEAD/H box of helicases, and extensive homology to ATPases of MSHA-type pilus systems and to GspA proteins associated with type II protein secretion systems.
Probab=97.27 E-value=0.0071 Score=58.89 Aligned_cols=44 Identities=18% Similarity=0.155 Sum_probs=30.4
Q ss_pred CCcHHHHHHHHHHHh--CCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 25 QPRPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
-..+.+.+++..+-. ..+....++.+|.|+|||..+-.++..+.
T Consensus 23 ~~~~~~~~~~~~l~~~~~~~~~~~~l~G~~G~GKTtl~~~l~~~l~ 68 (269)
T TIGR03015 23 YPSKGHKRAMAYLEYGLSQREGFILITGEVGAGKTTLIRNLLKRLD 68 (269)
T ss_pred CCCHHHHHHHHHHHHHHhcCCCEEEEEcCCCCCHHHHHHHHHHhcC
Confidence 445556667775421 12223578999999999999988887765
No 205
>KOG1805 consensus DNA replication helicase [Replication, recombination and repair]
Probab=97.27 E-value=0.00096 Score=72.85 Aligned_cols=121 Identities=20% Similarity=0.211 Sum_probs=84.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
..|..-|++|+-+.+... ...+|.+-+|+|||.+...++. ..+++||+.+=|-..+++..-.+..+ ++. +.
T Consensus 668 ~~LN~dQr~A~~k~L~ae--dy~LI~GMPGTGKTTtI~~LIkiL~~~gkkVLLtsyThsAVDNILiKL~~~-~i~---~l 741 (1100)
T KOG1805|consen 668 LRLNNDQRQALLKALAAE--DYALILGMPGTGKTTTISLLIKILVALGKKVLLTSYTHSAVDNILIKLKGF-GIY---IL 741 (1100)
T ss_pred hhcCHHHHHHHHHHHhcc--chheeecCCCCCchhhHHHHHHHHHHcCCeEEEEehhhHHHHHHHHHHhcc-Ccc---ee
Confidence 368889999999988765 2789999999999999877775 44789999998888899988777765 333 22
Q ss_pred EEcCCcc----------------------ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 101 RFTSDSK----------------------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 101 ~~~~~~~----------------------~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
++....+ +++-....||.+|=--+. ...|..+.||++|+|||-.+.
T Consensus 742 RLG~~~kih~~v~e~~~~~~~s~ks~~~l~~~~~~~~IVa~TClgi~------------~plf~~R~FD~cIiDEASQI~ 809 (1100)
T KOG1805|consen 742 RLGSEEKIHPDVEEFTLTNETSEKSYADLKKFLDQTSIVACTCLGIN------------HPLFVNRQFDYCIIDEASQIL 809 (1100)
T ss_pred ecCCccccchHHHHHhcccccchhhHHHHHHHhCCCcEEEEEccCCC------------chhhhccccCEEEEccccccc
Confidence 2222111 011245566666632222 133445889999999999988
Q ss_pred chHH
Q 010367 159 AHMF 162 (512)
Q Consensus 159 ~~~~ 162 (512)
-+..
T Consensus 810 lP~~ 813 (1100)
T KOG1805|consen 810 LPLC 813 (1100)
T ss_pred cchh
Confidence 6643
No 206
>PRK12723 flagellar biosynthesis regulator FlhF; Provisional
Probab=97.24 E-value=0.0031 Score=64.37 Aligned_cols=111 Identities=16% Similarity=0.261 Sum_probs=62.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEE-cC-hhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLA-TN-AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~-P~-~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (512)
+..++++|||+|||.++..++..+ ++++.+++ .+ +.-...|...+...++++ +
T Consensus 175 ~vi~lvGptGvGKTTT~aKLA~~~~~~~~~~g~~V~lit~Dt~R~aa~eQL~~~a~~lgvp---v--------------- 236 (388)
T PRK12723 175 RVFILVGPTGVGKTTTIAKLAAIYGINSDDKSLNIKIITIDNYRIGAKKQIQTYGDIMGIP---V--------------- 236 (388)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhhhccCCCeEEEEeccCccHHHHHHHHHHhhcCCcc---e---------------
Confidence 467889999999999987777543 24565555 22 222222233333322322 1
Q ss_pred eEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHhccc--ceEEEEcccCCCCc
Q 010367 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKS--HCKLGLTATLVRED 185 (512)
Q Consensus 115 ~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~~~~--~~~l~LTATp~~~~ 185 (512)
.++.+++.+. ..+..+ .++++||||++.+.... ....++..... ...|.|+||-..++
T Consensus 237 -~~~~~~~~l~----------~~L~~~--~~~DlVLIDTaGr~~~~~~~l~el~~~l~~~~~~~e~~LVlsat~~~~~ 301 (388)
T PRK12723 237 -KAIESFKDLK----------EEITQS--KDFDLVLVDTIGKSPKDFMKLAEMKELLNACGRDAEFHLAVSSTTKTSD 301 (388)
T ss_pred -EeeCcHHHHH----------HHHHHh--CCCCEEEEcCCCCCccCHHHHHHHHHHHHhcCCCCeEEEEEcCCCCHHH
Confidence 1122343332 223333 57899999999998754 22233343322 46789999986433
No 207
>KOG0952 consensus DNA/RNA helicase MER3/SLH1, DEAD-box superfamily [RNA processing and modification]
Probab=97.24 E-value=0.00031 Score=77.08 Aligned_cols=110 Identities=20% Similarity=0.271 Sum_probs=79.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccc--cCCCeEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF--RGNAGVV 117 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~--~~~~~Iv 117 (512)
+.++-+|||+|||+.+-.++... ..++++++|..+|+..-.+.+.+....+..++...+|+..... -..++++
T Consensus 945 ~~~~g~ptgsgkt~~ae~a~~~~~~~~p~~kvvyIap~kalvker~~Dw~~r~~~~g~k~ie~tgd~~pd~~~v~~~~~~ 1024 (1230)
T KOG0952|consen 945 NFLLGAPTGSGKTVVAELAIFRALSYYPGSKVVYIAPDKALVKERSDDWSKRDELPGIKVIELTGDVTPDVKAVREADIV 1024 (1230)
T ss_pred hhhhcCCccCcchhHHHHHHHHHhccCCCccEEEEcCCchhhcccccchhhhcccCCceeEeccCccCCChhheecCceE
Confidence 56788999999999987777543 3689999999999877666666554455556777777754332 2568899
Q ss_pred EEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 118 v~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
|||++.+-.. .|++...+. + ..+.++|+||.|.++..
T Consensus 1025 ittpek~dgi-~Rsw~~r~~---v--~~v~~iv~de~hllg~~ 1061 (1230)
T KOG0952|consen 1025 ITTPEKWDGI-SRSWQTRKY---V--QSVSLIVLDEIHLLGED 1061 (1230)
T ss_pred EcccccccCc-cccccchhh---h--ccccceeecccccccCC
Confidence 9999987654 233333222 2 46688999999999854
No 208
>TIGR02768 TraA_Ti Ti-type conjugative transfer relaxase TraA. This protein contains domains distinctive of a single strand exonuclease (N-terminus, MobA/MobL, pfam03389) as well as a helicase domain (central region, homologous to the corresponding region of the F-type relaxase TraI, TIGR02760). This protein likely fills the same role as TraI(F), nicking (at the oriT site) and unwinding the coiled plasmid prior to conjugative transfer.
Probab=97.23 E-value=0.0018 Score=72.16 Aligned_cols=124 Identities=17% Similarity=0.178 Sum_probs=80.6
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH---HhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
..+.|.+-|++|+..++..+ +-.+|.++.|+|||.+.-.++ ...+.++++++|+...+..+. .-++++.
T Consensus 349 ~~~~Ls~~Q~~Av~~i~~s~--~~~il~G~aGTGKTtll~~i~~~~~~~g~~V~~~ApTg~Aa~~L~----~~~g~~a-- 420 (744)
T TIGR02768 349 QHYRLSEEQYEAVRHVTGSG--DIAVVVGRAGTGKSTMLKAAREAWEAAGYRVIGAALSGKAAEGLQ----AESGIES-- 420 (744)
T ss_pred ccCCCCHHHHHHHHHHhcCC--CEEEEEecCCCCHHHHHHHHHHHHHhCCCeEEEEeCcHHHHHHHH----hccCCce--
Confidence 45789999999999988754 378999999999998855444 234678999999987555443 2222211
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc-ccceEEEE
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGL 177 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~-~~~~~l~L 177 (512)
.|...+.....+. ... ....+++||||+-++....+..++... ....+|.|
T Consensus 421 --------------------~Ti~~~~~~~~~~------~~~--~~~~~llIvDEasMv~~~~~~~Ll~~~~~~~~kliL 472 (744)
T TIGR02768 421 --------------------RTLASLEYAWANG------RDL--LSDKDVLVIDEAGMVGSRQMARVLKEAEEAGAKVVL 472 (744)
T ss_pred --------------------eeHHHHHhhhccC------ccc--CCCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 1222221100000 000 146789999999999998888777643 34567788
Q ss_pred cccC
Q 010367 178 TATL 181 (512)
Q Consensus 178 TATp 181 (512)
-|=|
T Consensus 473 VGD~ 476 (744)
T TIGR02768 473 VGDP 476 (744)
T ss_pred ECCh
Confidence 7754
No 209
>PRK05707 DNA polymerase III subunit delta'; Validated
Probab=97.23 E-value=0.0024 Score=63.92 Aligned_cols=44 Identities=23% Similarity=0.400 Sum_probs=36.7
Q ss_pred CCcHHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 25 QPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.++|||....+.++..++ ++..++.+|.|.|||..+..++..+.
T Consensus 3 ~~yPWl~~~~~~~~~~~r~~ha~Lf~G~~G~GK~~~A~~~A~~ll 47 (328)
T PRK05707 3 EIYPWQQSLWQQLAGRGRHPHAYLLHGPAGIGKRALAERLAAALL 47 (328)
T ss_pred cCCCCcHHHHHHHHHCCCcceeeeeECCCCCCHHHHHHHHHHHHc
Confidence 468999999999998765 34567899999999999988887653
No 210
>PRK13341 recombination factor protein RarA/unknown domain fusion protein; Reviewed
Probab=97.20 E-value=0.0025 Score=70.28 Aligned_cols=39 Identities=23% Similarity=0.233 Sum_probs=29.4
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
.+..++..++..+.++.+|+|+|||.++-.++.....++
T Consensus 42 ~L~~~i~~~~~~slLL~GPpGtGKTTLA~aIA~~~~~~f 80 (725)
T PRK13341 42 LLRRAIKADRVGSLILYGPPGVGKTTLARIIANHTRAHF 80 (725)
T ss_pred HHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHhcCcc
Confidence 344556666556899999999999999888887655443
No 211
>KOG1132 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=97.16 E-value=0.0018 Score=70.26 Aligned_cols=42 Identities=29% Similarity=0.458 Sum_probs=33.1
Q ss_pred CCCCCCCcHHHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHH
Q 010367 20 LKPHAQPRPYQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i 61 (512)
..+.++++|-|..-+.+++.. .+.-++++-.|||+|||+..+
T Consensus 16 V~fP~qpY~~Q~a~M~rvl~~L~~~q~~llESPTGTGKSLsLL 58 (945)
T KOG1132|consen 16 VEFPFQPYPTQLAFMTRVLSCLDRKQNGLLESPTGTGKSLSLL 58 (945)
T ss_pred eeccCCcchHHHHHHHHHHHHHHHhhhhhccCCCCCCccHHHH
Confidence 456678999999999987653 223479999999999998754
No 212
>smart00382 AAA ATPases associated with a variety of cellular activities. AAA - ATPases associated with a variety of cellular activities. This profile/alignment only detects a fraction of this vast family. The poorly conserved N-terminal helix is missing from the alignment.
Probab=97.16 E-value=0.0015 Score=55.92 Aligned_cols=36 Identities=19% Similarity=0.303 Sum_probs=29.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCC---EEEEEcChh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAV 79 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~---~Lvl~P~~~ 79 (512)
...+|.+|+|+|||.++..++..+... ++++.+...
T Consensus 3 ~~~~l~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~~~~ 41 (148)
T smart00382 3 EVILIVGPPGSGKTTLARALARELGPPGGGVIYIDGEDI 41 (148)
T ss_pred CEEEEECCCCCcHHHHHHHHHhccCCCCCCEEEECCEEc
Confidence 478999999999999999999888764 777776654
No 213
>PF00448 SRP54: SRP54-type protein, GTPase domain; InterPro: IPR000897 The signal recognition particle (SRP) is a multimeric protein, which along with its conjugate receptor (SR), is involved in targeting secretory proteins to the rough endoplasmic reticulum (RER) membrane in eukaryotes, or to the plasma membrane in prokaryotes [, ]. SRP recognises the signal sequence of the nascent polypeptide on the ribosome, retards its elongation, and docks the SRP-ribosome-polypeptide complex to the RER membrane via the SR receptor. Eukaryotic SRP consists of six polypeptides (SRP9, SRP14, SRP19, SRP54, SRP68 and SRP72) and a single 300 nucleotide 7S RNA molecule. The RNA component catalyses the interaction of SRP with its SR receptor []. In higher eukaryotes, the SRP complex consists of the Alu domain and the S domain linked by the SRP RNA. The Alu domain consists of a heterodimer of SRP9 and SRP14 bound to the 5' and 3' terminal sequences of SRP RNA. This domain is necessary for retarding the elongation of the nascent polypeptide chain, which gives SRP time to dock the ribosome-polypeptide complex to the RER membrane. In archaea, the SRP complex contains 7S RNA like its eukaryotic counterpart, yet only includes two of the six protein subunits found in the eukarytic complex: SRP19 and SRP54 []. This entry represents the GTPase domain of the 54 kDa SRP54 component, a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 of the signal recognition particle has a three-domain structure: an N-terminal helical bundle domain, a GTPase domain, and the M-domain that binds the 7s RNA and also binds the signal sequence. The extreme C-terminal region is glycine-rich and lower in complexity and poorly conserved between species. The GTPase domain is evolutionary related to P-loop NTPase domains found in a variety of other proteins []. These proteins include Escherichia coli and Bacillus subtilis ffh protein (P48), which seems to be the prokaryotic counterpart of SRP54; signal recognition particle receptor alpha subunit (docking protein), an integral membrane GTP-binding protein which ensures, in conjunction with SRP, the correct targeting of nascent secretory proteins to the endoplasmic reticulum membrane; bacterial FtsY protein, which is believed to play a similar role to that of the docking protein in eukaryotes; the pilA protein from Neisseria gonorrhoeae, the homologue of ftsY; and bacterial flagellar biosynthesis protein flhF.; GO: 0005525 GTP binding, 0006614 SRP-dependent cotranslational protein targeting to membrane; PDB: 2OG2_A 3B9Q_A 3DM9_B 3DMD_B 3E70_C 3DM5_B 2XXA_C 2J28_9 1ZU5_B 1ZU4_A ....
Probab=97.10 E-value=0.0068 Score=56.06 Aligned_cols=116 Identities=18% Similarity=0.278 Sum_probs=65.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc--ChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT--NAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P--~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~ 119 (512)
-.++++|||+|||.+..-++..+ ++++.+++. .+.=+..+.+.+.+.++++ .+......
T Consensus 3 vi~lvGptGvGKTTt~aKLAa~~~~~~~~v~lis~D~~R~ga~eQL~~~a~~l~vp-----~~~~~~~~----------- 66 (196)
T PF00448_consen 3 VIALVGPTGVGKTTTIAKLAARLKLKGKKVALISADTYRIGAVEQLKTYAEILGVP-----FYVARTES----------- 66 (196)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEEESTSSTHHHHHHHHHHHHHTEE-----EEESSTTS-----------
T ss_pred EEEEECCCCCchHhHHHHHHHHHhhccccceeecCCCCCccHHHHHHHHHHHhccc-----cchhhcch-----------
Confidence 46789999999999987777543 456666663 2333444455555544432 12111100
Q ss_pred chhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHhc-ccceEEEEcccCCCCc
Q 010367 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLT-KSHCKLGLTATLVRED 185 (512)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~~-~~~~~l~LTATp~~~~ 185 (512)
.+..+ ....++.+...++++|+||-+-+.... .+.+++..+ +....|.|+||-..++
T Consensus 67 ~~~~~---------~~~~l~~~~~~~~D~vlIDT~Gr~~~d~~~~~el~~~~~~~~~~~~~LVlsa~~~~~~ 129 (196)
T PF00448_consen 67 DPAEI---------AREALEKFRKKGYDLVLIDTAGRSPRDEELLEELKKLLEALNPDEVHLVLSATMGQED 129 (196)
T ss_dssp CHHHH---------HHHHHHHHHHTTSSEEEEEE-SSSSTHHHHHHHHHHHHHHHSSSEEEEEEEGGGGGHH
T ss_pred hhHHH---------HHHHHHHHhhcCCCEEEEecCCcchhhHHHHHHHHHHhhhcCCccceEEEecccChHH
Confidence 01111 123345555577999999999988753 344444444 3346788999986543
No 214
>PF05496 RuvB_N: Holliday junction DNA helicase ruvB N-terminus; InterPro: IPR008824 The RuvB protein makes up part of the RuvABC revolvasome which catalyses the resolution of Holliday junctions that arise during genetic recombination and DNA repair. Branch migration is catalysed by the RuvB protein that is targeted to the Holliday junction by the structure specific RuvA protein []. This group of sequences contain this signature which is located in the N-terminal region of the proteins.; GO: 0009378 four-way junction helicase activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1IQP_B 3PFI_B 1IXR_C 1HQC_B 1IXS_B.
Probab=97.09 E-value=0.003 Score=58.85 Aligned_cols=31 Identities=16% Similarity=0.094 Sum_probs=24.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
.+.++++|+|+|||..|-.++...+..+.++
T Consensus 51 ~h~lf~GPPG~GKTTLA~IIA~e~~~~~~~~ 81 (233)
T PF05496_consen 51 DHMLFYGPPGLGKTTLARIIANELGVNFKIT 81 (233)
T ss_dssp -EEEEESSTTSSHHHHHHHHHHHCT--EEEE
T ss_pred ceEEEECCCccchhHHHHHHHhccCCCeEec
Confidence 5799999999999999999998888766544
No 215
>PRK12323 DNA polymerase III subunits gamma and tau; Provisional
Probab=97.08 E-value=0.0037 Score=67.00 Aligned_cols=41 Identities=15% Similarity=0.149 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCCcc-eEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++-.+.|..++..++-.+ .++++|.|.|||.++..++..+.
T Consensus 22 e~vv~~L~~al~~gRLpHA~LFtGP~GvGKTTLAriLAkaLn 63 (700)
T PRK12323 22 EHVVRALTHALEQQRLHHAYLFTGTRGVGKTTLSRILAKSLN 63 (700)
T ss_pred HHHHHHHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344455666677665434 58999999999999999987765
No 216
>PRK13889 conjugal transfer relaxase TraA; Provisional
Probab=97.08 E-value=0.0025 Score=72.20 Aligned_cols=125 Identities=18% Similarity=0.126 Sum_probs=80.2
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH---HhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.+.|.+-|.+|+..++.... -++|.++.|+|||.+.-.+. ...+.+++.++||...+... ..-+++.
T Consensus 344 g~~Ls~eQr~Av~~il~s~~--v~vv~G~AGTGKTT~l~~~~~~~e~~G~~V~~~ApTGkAA~~L----~e~tGi~---- 413 (988)
T PRK13889 344 GLVLSGEQADALAHVTDGRD--LGVVVGYAGTGKSAMLGVAREAWEAAGYEVRGAALSGIAAENL----EGGSGIA---- 413 (988)
T ss_pred CCCCCHHHHHHHHHHhcCCC--eEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEecCcHHHHHHH----hhccCcc----
Confidence 46799999999999887542 67899999999998743322 23467899999988644432 2211221
Q ss_pred EEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc-ccceEEEEc
Q 010367 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLGLT 178 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~-~~~~~l~LT 178 (512)
-.|...+.....+. ... ....+++||||+-++....+..++... ....+|.|.
T Consensus 414 ------------------a~TI~sll~~~~~~------~~~--l~~~~vlIVDEASMv~~~~m~~LL~~a~~~garvVLV 467 (988)
T PRK13889 414 ------------------SRTIASLEHGWGQG------RDL--LTSRDVLVIDEAGMVGTRQLERVLSHAADAGAKVVLV 467 (988)
T ss_pred ------------------hhhHHHHHhhhccc------ccc--cccCcEEEEECcccCCHHHHHHHHHhhhhCCCEEEEE
Confidence 11222221100000 001 135579999999999999888888754 455678887
Q ss_pred ccCCC
Q 010367 179 ATLVR 183 (512)
Q Consensus 179 ATp~~ 183 (512)
|=|.+
T Consensus 468 GD~~Q 472 (988)
T PRK13889 468 GDPQQ 472 (988)
T ss_pred CCHHH
Confidence 76643
No 217
>PLN03025 replication factor C subunit; Provisional
Probab=97.02 E-value=0.0047 Score=61.94 Aligned_cols=41 Identities=20% Similarity=0.178 Sum_probs=31.5
Q ss_pred HHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+...+.+..+..++...+.++++|+|+|||..+..++..+.
T Consensus 19 ~~~~~~L~~~~~~~~~~~lll~Gp~G~GKTtla~~la~~l~ 59 (319)
T PLN03025 19 EDAVSRLQVIARDGNMPNLILSGPPGTGKTTSILALAHELL 59 (319)
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHh
Confidence 34555566666666556789999999999999998887763
No 218
>KOG0739 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=97.02 E-value=0.0056 Score=58.67 Aligned_cols=53 Identities=23% Similarity=0.286 Sum_probs=42.2
Q ss_pred HhCCC--CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 38 FGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 38 ~~~~~--~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
|.+++ -+..++.+|+|+||+..+-+++...+ .+.+-+.++.|+..|..+-++.
T Consensus 159 FtGkR~PwrgiLLyGPPGTGKSYLAKAVATEAn-STFFSvSSSDLvSKWmGESEkL 213 (439)
T KOG0739|consen 159 FTGKRKPWRGILLYGPPGTGKSYLAKAVATEAN-STFFSVSSSDLVSKWMGESEKL 213 (439)
T ss_pred hcCCCCcceeEEEeCCCCCcHHHHHHHHHhhcC-CceEEeehHHHHHHHhccHHHH
Confidence 44443 25677889999999999999988887 7788888899999888776664
No 219
>PRK14956 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.98 E-value=0.0052 Score=64.02 Aligned_cols=38 Identities=24% Similarity=0.353 Sum_probs=28.3
Q ss_pred HHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 32 KSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 32 ~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
..+..++.+++ ++..++++|.|+|||.++..++..+..
T Consensus 28 ~~L~~~i~~~ri~ha~Lf~GP~GtGKTTlAriLAk~Lnc 66 (484)
T PRK14956 28 GALQNALKSGKIGHAYIFFGPRGVGKTTIARILAKRLNC 66 (484)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhcCc
Confidence 34445566654 234699999999999999999987753
No 220
>PRK07003 DNA polymerase III subunits gamma and tau; Validated
Probab=96.96 E-value=0.0062 Score=66.29 Aligned_cols=40 Identities=18% Similarity=0.223 Sum_probs=29.3
Q ss_pred HHHHHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 29 YQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 29 yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+=.+.|..++..++- +..|+++|.|+|||.++..++..+.
T Consensus 23 ~Vv~~L~~aL~~gRL~HAyLFtGPpGvGKTTlAriLAKaLn 63 (830)
T PRK07003 23 HVVRALTHALDGGRLHHAYLFTGTRGVGKTTLSRIFAKALN 63 (830)
T ss_pred HHHHHHHHHHhcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 334455556666543 3458999999999999999888775
No 221
>TIGR02881 spore_V_K stage V sporulation protein K. Members of this protein family are the stage V sporulation protein K (SpoVK), a close homolog of the Rubisco expression protein CbbX (TIGR02880) and a members of the ATPase family associated with various cellular activities (pfam00004). Members are strictly limited to bacterial endospore-forming species, but are not universal in this group and are missing from the Clostridium group.
Probab=96.96 E-value=0.0038 Score=60.65 Aligned_cols=24 Identities=21% Similarity=0.025 Sum_probs=19.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.++.+|+|+|||.++-.++..+
T Consensus 43 ~~vll~GppGtGKTtlA~~ia~~l 66 (261)
T TIGR02881 43 LHMIFKGNPGTGKTTVARILGKLF 66 (261)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 467899999999999987777543
No 222
>PHA02544 44 clamp loader, small subunit; Provisional
Probab=96.96 E-value=0.0091 Score=59.70 Aligned_cols=53 Identities=13% Similarity=0.213 Sum_probs=36.5
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEE-EcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il-~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
...+...+.+..+...++..+.++ .+|+|+|||..+-.++...+..++.+-+.
T Consensus 24 ~~~~~~~~~l~~~~~~~~~~~~lll~G~~G~GKT~la~~l~~~~~~~~~~i~~~ 77 (316)
T PHA02544 24 ILPAADKETFKSIVKKGRIPNMLLHSPSPGTGKTTVAKALCNEVGAEVLFVNGS 77 (316)
T ss_pred cCcHHHHHHHHHHHhcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCccceEeccC
Confidence 445555566666666654445555 89999999999888887776666555543
No 223
>PRK14960 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.94 E-value=0.0076 Score=64.84 Aligned_cols=42 Identities=19% Similarity=0.204 Sum_probs=31.4
Q ss_pred HHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
++-.+.+..++.+++ ++..++++|.|+|||.++..++..+..
T Consensus 21 e~vv~~L~~aI~~grl~HAyLF~GPpGvGKTTlAriLAK~LnC 63 (702)
T PRK14960 21 NHVSRALSSALERGRLHHAYLFTGTRGVGKTTIARILAKCLNC 63 (702)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 344556666777665 345599999999999999999887753
No 224
>PRK14958 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.93 E-value=0.007 Score=64.36 Aligned_cols=40 Identities=15% Similarity=0.105 Sum_probs=29.4
Q ss_pred HHHHHHHHHHhCCCCcc-eEEEcCCCCcHHHHHHHHHHhcC
Q 010367 29 YQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 29 yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+-.+.+..++..++-.+ .++++|.|+|||.++..++..+.
T Consensus 23 ~v~~~L~~~~~~~~l~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (509)
T PRK14958 23 PVVRALSNALDQQYLHHAYLFTGTRGVGKTTISRILAKCLN 63 (509)
T ss_pred HHHHHHHHHHHhCCCCeeEEEECCCCCCHHHHHHHHHHHhc
Confidence 33445556666654334 58999999999999998887765
No 225
>PF05970 PIF1: PIF1-like helicase; InterPro: IPR010285 This entry represents PIF1 helicase and related proteins. The PIF1 helicase inhibits telomerase activity and is cell cycle regulated [, ].
Probab=96.93 E-value=0.0031 Score=64.34 Aligned_cols=114 Identities=18% Similarity=0.266 Sum_probs=73.1
Q ss_pred CCcHHHHHHHHHHHh---CCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHH--HHHHHHhhCCCC
Q 010367 25 QPRPYQEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQW--AFQFKLWSTIQD 96 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw--~~~~~~~~~~~~ 96 (512)
+|.+-|++++..+++ ...+....|.++-|+|||.+.-.+...+ ++.+++++||...+... -..+..+++++.
T Consensus 1 ~Ln~eQ~~~~~~v~~~~~~~~~~~~fv~G~~GtGKs~l~~~i~~~~~~~~~~~~~~a~tg~AA~~i~~G~T~hs~f~i~~ 80 (364)
T PF05970_consen 1 KLNEEQRRVFDTVIEAIENEEGLNFFVTGPAGTGKSFLIKAIIDYLRSRGKKVLVTAPTGIAAFNIPGGRTIHSFFGIPI 80 (364)
T ss_pred CCCHHHHHHHHHHHHHHHccCCcEEEEEcCCCCChhHHHHHHHHHhccccceEEEecchHHHHHhccCCcchHHhcCccc
Confidence 467889999887732 2334578899999999999987777655 45799999999766555 345566666542
Q ss_pred CcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHH
Q 010367 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (512)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~ 165 (512)
.. ... ...-+... ......+ ...+++|+||+-++.+..+..+
T Consensus 81 ~~------~~~------~~~~~~~~-------------~~~~~~l--~~~~~lIiDEism~~~~~l~~i 122 (364)
T PF05970_consen 81 NN------NEK------SQCKISKN-------------SRLRERL--RKADVLIIDEISMVSADMLDAI 122 (364)
T ss_pred cc------ccc------cccccccc-------------chhhhhh--hhheeeecccccchhHHHHHHH
Confidence 21 000 00101000 0112223 5668999999999998866644
No 226
>KOG2028 consensus ATPase related to the helicase subunit of the Holliday junction resolvase [Replication, recombination and repair]
Probab=96.84 E-value=0.0066 Score=59.78 Aligned_cols=104 Identities=18% Similarity=0.178 Sum_probs=65.0
Q ss_pred HHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCC---EEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccc
Q 010367 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKS---CLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF 110 (512)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~---~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~ 110 (512)
+..+++.++-.+.|+++|+|+|||..+=.++...+++ ++=+.-+.+-+....+-|++-
T Consensus 153 lrs~ieq~~ipSmIlWGppG~GKTtlArlia~tsk~~SyrfvelSAt~a~t~dvR~ife~a------------------- 213 (554)
T KOG2028|consen 153 LRSLIEQNRIPSMILWGPPGTGKTTLARLIASTSKKHSYRFVELSATNAKTNDVRDIFEQA------------------- 213 (554)
T ss_pred HHHHHHcCCCCceEEecCCCCchHHHHHHHHhhcCCCceEEEEEeccccchHHHHHHHHHH-------------------
Confidence 3455666666789999999999999998888888765 444444444344344444331
Q ss_pred cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcccCC
Q 010367 111 RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 111 ~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~ 182 (512)
+. ...+ ..+--++.+||+|++.-.+-...+-.+...-+++.-||-.
T Consensus 214 ------------------------q~-~~~l-~krkTilFiDEiHRFNksQQD~fLP~VE~G~I~lIGATTE 259 (554)
T KOG2028|consen 214 ------------------------QN-EKSL-TKRKTILFIDEIHRFNKSQQDTFLPHVENGDITLIGATTE 259 (554)
T ss_pred ------------------------HH-HHhh-hcceeEEEeHHhhhhhhhhhhcccceeccCceEEEecccC
Confidence 00 0111 1233478899999987555554555555556677778764
No 227
>PRK14962 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.76 E-value=0.0094 Score=62.73 Aligned_cols=41 Identities=20% Similarity=0.189 Sum_probs=30.4
Q ss_pred HHHHHHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++-.+.+..++..++- +..++++|+|+|||.++-.++..+.
T Consensus 20 ~~i~~~L~~~i~~~~l~~~~Lf~GPpGtGKTTlA~~lA~~l~ 61 (472)
T PRK14962 20 DHVKKLIINALKKNSISHAYIFAGPRGTGKTTVARILAKSLN 61 (472)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4445566666666543 3468999999999999988887764
No 228
>PRK13826 Dtr system oriT relaxase; Provisional
Probab=96.72 E-value=0.0074 Score=68.97 Aligned_cols=126 Identities=17% Similarity=0.167 Sum_probs=82.9
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
..+.|.+-|.+|+..+...+ +-++|.++.|+|||.+.-.+.. ..+.+++.++|+...+. .+..-++++.
T Consensus 378 ~~~~Ls~eQ~~Av~~i~~~~--r~~~v~G~AGTGKTt~l~~~~~~~e~~G~~V~g~ApTgkAA~----~L~e~~Gi~a-- 449 (1102)
T PRK13826 378 RHARLSDEQKTAIEHVAGPA--RIAAVVGRAGAGKTTMMKAAREAWEAAGYRVVGGALAGKAAE----GLEKEAGIQS-- 449 (1102)
T ss_pred cCCCCCHHHHHHHHHHhccC--CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEcCcHHHHH----HHHHhhCCCe--
Confidence 34789999999999876544 3789999999999988655443 45678999999887444 3344334321
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc-cceEEEE
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGL 177 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~-~~~~l~L 177 (512)
.|...+....... ...+ ..-+++||||+.++....+..++.... ...+|.|
T Consensus 450 --------------------~TIas~ll~~~~~------~~~l--~~~~vlVIDEAsMv~~~~m~~Ll~~~~~~garvVL 501 (1102)
T PRK13826 450 --------------------RTLSSWELRWNQG------RDQL--DNKTVFVLDEAGMVASRQMALFVEAVTRAGAKLVL 501 (1102)
T ss_pred --------------------eeHHHHHhhhccC------ccCC--CCCcEEEEECcccCCHHHHHHHHHHHHhcCCEEEE
Confidence 1222211000000 0011 234699999999999998888888774 4577888
Q ss_pred cccCCC
Q 010367 178 TATLVR 183 (512)
Q Consensus 178 TATp~~ 183 (512)
-|=|.+
T Consensus 502 VGD~~Q 507 (1102)
T PRK13826 502 VGDPEQ 507 (1102)
T ss_pred ECCHHH
Confidence 777643
No 229
>PRK14949 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.71 E-value=0.0092 Score=66.25 Aligned_cols=36 Identities=17% Similarity=0.179 Sum_probs=27.5
Q ss_pred HHHHHhCCCCcce-EEEcCCCCcHHHHHHHHHHhcCC
Q 010367 34 LSKMFGNGRARSG-IIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 34 l~~~~~~~~~~~~-il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
|..++..++-.+. |+++|.|+|||.++-.++..+..
T Consensus 28 LknaI~~~rl~HAyLFtGPpGtGKTTLARiLAk~Lnc 64 (944)
T PRK14949 28 LTNALTQQRLHHAYLFTGTRGVGKTSLARLFAKGLNC 64 (944)
T ss_pred HHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHhccC
Confidence 4455665554454 89999999999999999987753
No 230
>PRK12402 replication factor C small subunit 2; Reviewed
Probab=96.64 E-value=0.024 Score=57.18 Aligned_cols=43 Identities=16% Similarity=0.108 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
-++...+.+..++.++.....++.+|+|+|||.++..++..+.
T Consensus 19 g~~~~~~~L~~~~~~~~~~~lll~Gp~GtGKT~la~~~~~~l~ 61 (337)
T PRK12402 19 GQDEVVERLSRAVDSPNLPHLLVQGPPGSGKTAAVRALARELY 61 (337)
T ss_pred CCHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 4566777777777776444789999999999999988887664
No 231
>PRK08084 DNA replication initiation factor; Provisional
Probab=96.59 E-value=0.019 Score=54.82 Aligned_cols=44 Identities=14% Similarity=0.095 Sum_probs=27.8
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
..++..+......++.++++|+|+|||..+.+++... +.+++++
T Consensus 33 ~~~l~~~~~~~~~~~l~l~Gp~G~GKThLl~a~~~~~~~~~~~v~y~ 79 (235)
T PRK08084 33 LAALQNALRQEHSGYIYLWSREGAGRSHLLHAACAELSQRGRAVGYV 79 (235)
T ss_pred HHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEE
Confidence 3444444444334588999999999998876655432 3345544
No 232
>PRK08727 hypothetical protein; Validated
Probab=96.59 E-value=0.029 Score=53.45 Aligned_cols=32 Identities=19% Similarity=0.246 Sum_probs=22.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
...++++|+|+|||..+.+++.. .+.+++++.
T Consensus 42 ~~l~l~G~~G~GKThL~~a~~~~~~~~~~~~~y~~ 76 (233)
T PRK08727 42 DWLYLSGPAGTGKTHLALALCAAAEQAGRSSAYLP 76 (233)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEe
Confidence 46899999999999877665433 344555553
No 233
>PRK07994 DNA polymerase III subunits gamma and tau; Validated
Probab=96.57 E-value=0.017 Score=62.62 Aligned_cols=40 Identities=18% Similarity=0.155 Sum_probs=28.8
Q ss_pred HHHHHHHHHhCCCCcc-eEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 30 QEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
-.+.|...+..++-.+ .++.+|.|+|||.++..++..+..
T Consensus 24 vv~~L~~~l~~~rl~hAyLf~Gp~GvGKTTlAr~lAk~L~c 64 (647)
T PRK07994 24 VLTALANALDLGRLHHAYLFSGTRGVGKTTIARLLAKGLNC 64 (647)
T ss_pred HHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhhh
Confidence 3344555566665434 489999999999999888877653
No 234
>KOG0989 consensus Replication factor C, subunit RFC4 [Replication, recombination and repair]
Probab=96.56 E-value=0.0041 Score=59.96 Aligned_cols=41 Identities=17% Similarity=0.072 Sum_probs=31.6
Q ss_pred HHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 29 YQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 29 yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
+|...+..+. ......+.++.+|+|+|||-++.+++..+..
T Consensus 40 gQe~vV~~L~~a~~~~~lp~~LFyGPpGTGKTStalafar~L~~ 83 (346)
T KOG0989|consen 40 GQEHVVQVLKNALLRRILPHYLFYGPPGTGKTSTALAFARALNC 83 (346)
T ss_pred chHHHHHHHHHHHhhcCCceEEeeCCCCCcHhHHHHHHHHHhcC
Confidence 5777776543 2333457899999999999999999988865
No 235
>PHA02533 17 large terminase protein; Provisional
Probab=96.55 E-value=0.023 Score=60.68 Aligned_cols=143 Identities=19% Similarity=0.164 Sum_probs=79.0
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH--h---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC--R---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~--~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.++|+|+|++.+..+... +..++..+=..|||.++..++. . -+..+++++|+..-+....+.++......|.
T Consensus 57 Pf~L~p~Q~~i~~~~~~~---R~~ii~~aRq~GKStl~a~~al~~a~~~~~~~v~i~A~~~~QA~~vF~~ik~~ie~~P~ 133 (534)
T PHA02533 57 KVQMRDYQKDMLKIMHKN---RFNACNLSRQLGKTTVVAIFLLHYVCFNKDKNVGILAHKASMAAEVLDRTKQAIELLPD 133 (534)
T ss_pred ecCCcHHHHHHHHHHhcC---eEEEEEEcCcCChHHHHHHHHHHHHHhCCCCEEEEEeCCHHHHHHHHHHHHHHHHhCHH
Confidence 378999999999987533 3568889999999998664332 1 1347999999887555554555432221111
Q ss_pred --cEEEEc-CCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHHHhccc-
Q 010367 98 --QICRFT-SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLTKS- 171 (512)
Q Consensus 98 --~v~~~~-~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~~~- 171 (512)
...... +...-.+..++.|.+.|-+. +..+.....++|+||+|..+.. .+..+...+..
T Consensus 134 l~~~~i~~~~~~~I~l~NGS~I~~lss~~---------------~t~rG~~~~~liiDE~a~~~~~~e~~~ai~p~lasg 198 (534)
T PHA02533 134 FLQPGIVEWNKGSIELENGSKIGAYASSP---------------DAVRGNSFAMIYIDECAFIPNFIDFWLAIQPVISSG 198 (534)
T ss_pred HhhcceeecCccEEEeCCCCEEEEEeCCC---------------CccCCCCCceEEEeccccCCCHHHHHHHHHHHHHcC
Confidence 111111 11111122334444433221 1122356778999999998863 23323222222
Q ss_pred -ceEEEEcccCCC
Q 010367 172 -HCKLGLTATLVR 183 (512)
Q Consensus 172 -~~~l~LTATp~~ 183 (512)
..++.+..||..
T Consensus 199 ~~~r~iiiSTp~G 211 (534)
T PHA02533 199 RSSKIIITSTPNG 211 (534)
T ss_pred CCceEEEEECCCc
Confidence 134667777753
No 236
>PF02456 Adeno_IVa2: Adenovirus IVa2 protein; InterPro: IPR003389 Va2 protein can interact with the adenoviral packaging signal and this interaction involves DNA sequences that have previously been demonstrated to be required for packaging []. During the course of lytic infection, the adenovirus major late promoter (MLP) is induced to high levels after replication of viral DNA has started. IVa2 is a transcriptional activator of the major late promoter [].; GO: 0019083 viral transcription
Probab=96.54 E-value=0.14 Score=49.61 Aligned_cols=103 Identities=17% Similarity=0.220 Sum_probs=58.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhH-----HHHHHHHHH--hhCCCCCcEEEEcCCccccccCC
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSV-----DQWAFQFKL--WSTIQDDQICRFTSDSKERFRGN 113 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~-----~Qw~~~~~~--~~~~~~~~v~~~~~~~~~~~~~~ 113 (512)
+++.+|||+||+-.-=.++... ...|++|+|.+..+ .-|..++.. |..-+...+.-.++.. .
T Consensus 90 ~~VYGPTG~GKSqLlRNLis~~lI~P~PETVfFItP~~~mIpp~E~~aW~~Ql~EgNY~~~~~gTi~P~t~t~------~ 163 (369)
T PF02456_consen 90 GVVYGPTGSGKSQLLRNLISCQLIQPPPETVFFITPQKDMIPPQEITAWETQLCEGNYDCGPDGTIVPQTGTF------R 163 (369)
T ss_pred EEEECCCCCCHHHHHHHhhhcCcccCCCCceEEECCCCCCCCHHHHHHHHHHHHhcCCCCCCCCeeccccccc------c
Confidence 6888999999996654444322 35799999988553 346666654 1111111222222322 2
Q ss_pred CeEEEEchhhhhccCCCc-hhHHHHHHHHhcCCccEEEEcCC
Q 010367 114 AGVVVTTYNMVAFGGKRS-EESEKIIEEIRNREWGLLLMDEV 154 (512)
Q Consensus 114 ~~Ivv~T~~~l~~~~~r~-~~~~~~~~~l~~~~~~lvIiDEa 154 (512)
+..+-+||+-+....+-. .....++..-..+..-+||+|||
T Consensus 164 P~Fv~msy~e~t~~~NldI~~p~NiF~~Aa~~GPiaIImDEC 205 (369)
T PF02456_consen 164 PKFVEMSYDEATSPENLDITNPNNIFAQAAKKGPIAIIMDEC 205 (369)
T ss_pred ccceeecHhhhCCccccCCCCchHHHHHHHhcCCEEEEhHHH
Confidence 457777887776542211 01222333334567789999998
No 237
>PRK14964 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.54 E-value=0.019 Score=60.33 Aligned_cols=125 Identities=16% Similarity=0.232 Sum_probs=66.2
Q ss_pred HHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCC---CEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcC
Q 010367 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK---SCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTS 104 (512)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~---~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~ 104 (512)
+-.+.+..++..++ ++..++++|.|+|||.++..++..+.. +..--|-. +.. ...+... ...++..+.+
T Consensus 20 ~vv~~L~~a~~~~ri~ha~Lf~Gp~G~GKTT~ArilAk~LnC~~~~~~~pCg~---C~~-C~~i~~~---~~~Dv~eida 92 (491)
T PRK14964 20 VLVRILRNAFTLNKIPQSILLVGASGVGKTTCARIISLCLNCSNGPTSDPCGT---CHN-CISIKNS---NHPDVIEIDA 92 (491)
T ss_pred HHHHHHHHHHHcCCCCceEEEECCCCccHHHHHHHHHHHHcCcCCCCCCCccc---cHH-HHHHhcc---CCCCEEEEec
Confidence 44445555565554 457899999999999999888866532 21111111 111 1122221 1123444433
Q ss_pred CccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHh----cCCccEEEEcCCCCCCchHHHHHHHhcc---cceEEEE
Q 010367 105 DSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR----NREWGLLLMDEVHVVPAHMFRKVISLTK---SHCKLGL 177 (512)
Q Consensus 105 ~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~----~~~~~lvIiDEaH~~~~~~~~~~l~~~~---~~~~l~L 177 (512)
.... ..+.+ +.+.+... ..++.++||||+|.+....+..+++.+. .+.++.|
T Consensus 93 as~~-----------~vddI----------R~Iie~~~~~P~~~~~KVvIIDEah~Ls~~A~NaLLK~LEePp~~v~fIl 151 (491)
T PRK14964 93 ASNT-----------SVDDI----------KVILENSCYLPISSKFKVYIIDEVHMLSNSAFNALLKTLEEPAPHVKFIL 151 (491)
T ss_pred ccCC-----------CHHHH----------HHHHHHHHhccccCCceEEEEeChHhCCHHHHHHHHHHHhCCCCCeEEEE
Confidence 2110 11111 12222211 1467899999999999877766666554 4455666
Q ss_pred cccC
Q 010367 178 TATL 181 (512)
Q Consensus 178 TATp 181 (512)
+.|-
T Consensus 152 atte 155 (491)
T PRK14964 152 ATTE 155 (491)
T ss_pred EeCC
Confidence 5553
No 238
>PRK14951 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.53 E-value=0.018 Score=62.32 Aligned_cols=37 Identities=19% Similarity=0.234 Sum_probs=27.6
Q ss_pred HHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 32 KSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 32 ~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+.|..++..++- +..++++|.|+|||.++..++..+.
T Consensus 26 ~~L~~~l~~~rl~ha~Lf~Gp~GvGKTtlAr~lAk~Ln 63 (618)
T PRK14951 26 QALTNALTQQRLHHAYLFTGTRGVGKTTVSRILAKSLN 63 (618)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 345556666553 3458999999999999999887764
No 239
>PRK11747 dinG ATP-dependent DNA helicase DinG; Provisional
Probab=96.46 E-value=0.021 Score=63.33 Aligned_cols=101 Identities=19% Similarity=0.240 Sum_probs=68.7
Q ss_pred HHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC----CC-ceeCCCCHHHHHHHHHHhhCC---CCccEEEEeCCCcc
Q 010367 255 ACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KP-MIYGATSHVERTKILQAFKCS---RDLNTIFLSKVGDN 326 (512)
Q Consensus 255 ~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~----~~-~i~g~~~~~eR~~il~~F~~~---~~~~vlv~t~~~~~ 326 (512)
++..|.+... ..| .++||+.+-..++.++..|. .. ++.|. ..|.+++++|++. ++-.||++|....+
T Consensus 523 ~~~~i~~l~~-~~g-g~LVlFtSy~~l~~v~~~l~~~~~~~ll~Q~~---~~~~~ll~~f~~~~~~~~~~VL~g~~sf~E 597 (697)
T PRK11747 523 MAEFLPELLE-KHK-GSLVLFASRRQMQKVADLLPRDLRLMLLVQGD---QPRQRLLEKHKKRVDEGEGSVLFGLQSFAE 597 (697)
T ss_pred HHHHHHHHHh-cCC-CEEEEeCcHHHHHHHHHHHHHhcCCcEEEeCC---chHHHHHHHHHHHhccCCCeEEEEeccccc
Confidence 3444444444 444 47999999999998888773 33 34554 2577888777741 24569999999999
Q ss_pred cccCcc--ccEEEEecCCCCCH---H--------------------------HHHHHhhcccccC
Q 010367 327 SIDIPE--ANVIIQISSHAGSR---R--------------------------QEAQRLGRILRAK 360 (512)
Q Consensus 327 GlDlp~--~~~vI~~~~~~~s~---~--------------------------~~~Q~~GR~~R~g 360 (512)
|||+|+ +++||+..-|+.+| . ...|.+||..|..
T Consensus 598 GVD~pGd~l~~vII~kLPF~~p~dp~~~ar~~~~~~~g~~~F~~~~lP~A~~kl~Qg~GRlIRs~ 662 (697)
T PRK11747 598 GLDLPGDYLTQVIITKIPFAVPDSPVEATLAEWLKSRGGNPFMEISVPDASFKLIQAVGRLIRSE 662 (697)
T ss_pred cccCCCCceEEEEEEcCCCCCCCCHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHhccccccC
Confidence 999997 46777754343222 1 2378999999976
No 240
>PHA03333 putative ATPase subunit of terminase; Provisional
Probab=96.44 E-value=0.023 Score=61.01 Aligned_cols=146 Identities=13% Similarity=0.113 Sum_probs=84.5
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH---Hh-cCCCEEEEEcChhhHHHHHHHHHHhhC-------CC
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CR-IKKSCLCLATNAVSVDQWAFQFKLWST-------IQ 95 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~-~~~~~Lvl~P~~~L~~Qw~~~~~~~~~-------~~ 95 (512)
-|+=.+-+++++...+++..++..|=|.|||.+...++ .. .+.+++|.+|...-+.+..+.++..+. .+
T Consensus 171 ~~~~~~~id~~~~~fkq~~tV~taPRqrGKS~iVgi~l~~La~f~Gi~IlvTAH~~~ts~evF~rv~~~le~lg~~~~fp 250 (752)
T PHA03333 171 SPRTLREIDRIFDEYGKCYTAATVPRRCGKTTIMAIILAAMISFLEIDIVVQAQRKTMCLTLYNRVETVVHAYQHKPWFP 250 (752)
T ss_pred ChhhHHHHHHHHHHHhhcceEEEeccCCCcHHHHHHHHHHHHHhcCCeEEEECCChhhHHHHHHHHHHHHHHhccccccC
Confidence 34555556777666555688999999999998754332 22 456899999988777776666555432 11
Q ss_pred C-CcEEEEcCCccccccCCCeEEEEchhhhh-------ccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHH
Q 010367 96 D-DQICRFTSDSKERFRGNAGVVVTTYNMVA-------FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (512)
Q Consensus 96 ~-~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~-------~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~ 167 (512)
. ..+....++.. .|.+..+.... .. .+. .+..+...++++|+|||+.++.+.+..++-
T Consensus 251 ~~~~iv~vkgg~E-------~I~f~~p~gak~G~sti~F~-Ars------~~s~RG~~~DLLIVDEAAfI~~~~l~aIlP 316 (752)
T PHA03333 251 EEFKIVTLKGTDE-------NLEYISDPAAKEGKTTAHFL-ASS------PNAARGQNPDLVIVDEAAFVNPGALLSVLP 316 (752)
T ss_pred CCceEEEeeCCee-------EEEEecCcccccCcceeEEe-ccc------CCCcCCCCCCEEEEECcccCCHHHHHHHHH
Confidence 1 12222222221 12222211110 00 000 122333567999999999999998888776
Q ss_pred hcc-cceEEEEcccCCCCcc
Q 010367 168 LTK-SHCKLGLTATLVREDE 186 (512)
Q Consensus 168 ~~~-~~~~l~LTATp~~~~~ 186 (512)
.+. ...++.+.-||...+.
T Consensus 317 ~l~~~~~k~IiISS~~~~~s 336 (752)
T PHA03333 317 LMAVKGTKQIHISSPVDADS 336 (752)
T ss_pred HHccCCCceEEEeCCCCcch
Confidence 665 3445555566654443
No 241
>PRK06645 DNA polymerase III subunits gamma and tau; Validated
Probab=96.40 E-value=0.022 Score=60.30 Aligned_cols=39 Identities=23% Similarity=0.139 Sum_probs=28.8
Q ss_pred HHHHHHH---HHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 30 QEKSLSK---MFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 30 Q~~al~~---~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
|..++.. .+..++ ++..++.+|.|+|||.++-.++..+.
T Consensus 26 q~~vv~~L~~ai~~~ri~~a~Lf~Gp~G~GKTT~ArilAk~Ln 68 (507)
T PRK06645 26 QEVLVKVLSYTILNDRLAGGYLLTGIRGVGKTTSARIIAKAVN 68 (507)
T ss_pred cHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 5555543 344443 45789999999999999999987765
No 242
>PRK11889 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=96.40 E-value=0.044 Score=55.64 Aligned_cols=112 Identities=16% Similarity=0.165 Sum_probs=62.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc-C--hhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P-~--~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (512)
+...+++|+|+|||.++..++..+ ++++.++.. + ...++||...-.. .+++ .++
T Consensus 242 ~vI~LVGptGvGKTTTiaKLA~~L~~~GkkVglI~aDt~RiaAvEQLk~yae~-lgip-------------------v~v 301 (436)
T PRK11889 242 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKT-IGFE-------------------VIA 301 (436)
T ss_pred cEEEEECCCCCcHHHHHHHHHHHHHHcCCcEEEEecCCcchHHHHHHHHHhhh-cCCc-------------------EEe
Confidence 467899999999999987777544 346665553 2 2346666642222 1211 122
Q ss_pred EEchhhhhccCCCchhHHHHHHHHhc-CCccEEEEcCCCCCCch--HH---HHHHHhccc-ceEEEEcccCCCCc
Q 010367 118 VTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAH--MF---RKVISLTKS-HCKLGLTATLVRED 185 (512)
Q Consensus 118 v~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~lvIiDEaH~~~~~--~~---~~~l~~~~~-~~~l~LTATp~~~~ 185 (512)
+.++..+. ..+..+.. .++++||||-+=+.... .. .+++..... ...|.||||-..++
T Consensus 302 ~~d~~~L~----------~aL~~lk~~~~~DvVLIDTaGRs~kd~~lm~EL~~~lk~~~PdevlLVLsATtk~~d 366 (436)
T PRK11889 302 VRDEAAMT----------RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 366 (436)
T ss_pred cCCHHHHH----------HHHHHHHhccCCCEEEEeCccccCcCHHHHHHHHHHHhhcCCCeEEEEECCccChHH
Confidence 23444332 22344432 36899999999776643 22 333333222 24566888865433
No 243
>PRK07952 DNA replication protein DnaC; Validated
Probab=96.39 E-value=0.046 Score=52.33 Aligned_cols=58 Identities=28% Similarity=0.199 Sum_probs=36.9
Q ss_pred HHHHHHHHHHHh---C--CCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHH
Q 010367 28 PYQEKSLSKMFG---N--GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 28 ~yQ~~al~~~~~---~--~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
+.|..++..+.. + ....+.++.+++|+|||..+.+++..+ +.+++++ + +.+|...+..
T Consensus 79 ~~q~~al~~a~~~~~~~~~~~~~~~l~G~~GtGKThLa~aia~~l~~~g~~v~~i-t----~~~l~~~l~~ 144 (244)
T PRK07952 79 EGQMNALSKARQYVEEFDGNIASFIFSGKPGTGKNHLAAAICNELLLRGKSVLII-T----VADIMSAMKD 144 (244)
T ss_pred chHHHHHHHHHHHHHhhccCCceEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEE-E----HHHHHHHHHH
Confidence 457667765432 1 112368999999999999988888655 4456555 3 3445555543
No 244
>PRK14969 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.036 Score=59.37 Aligned_cols=41 Identities=15% Similarity=0.152 Sum_probs=29.5
Q ss_pred HHHHHHHHHHHhCCCCcc-eEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++-.+.+..++..++-.+ .++.+|.|+|||.++-.++..+.
T Consensus 22 ~~v~~~L~~~i~~~~~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 63 (527)
T PRK14969 22 EHVVRALTNALEQQRLHHAYLFTGTRGVGKTTLARILAKSLN 63 (527)
T ss_pred HHHHHHHHHHHHcCCCCEEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344445555666654334 58999999999999998887765
No 245
>PRK14959 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.38 E-value=0.027 Score=60.68 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=30.9
Q ss_pred HHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++-.+.|..++.+++ .+..++.+|.|+|||.++..++..+.
T Consensus 22 e~v~~~L~~ai~~~ri~ha~Lf~GPpG~GKTtiArilAk~L~ 63 (624)
T PRK14959 22 ETVKAILSRAAQENRVAPAYLFSGTRGVGKTTIARIFAKALN 63 (624)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhcc
Confidence 344555666666654 46778899999999999999987764
No 246
>PRK07764 DNA polymerase III subunits gamma and tau; Validated
Probab=96.37 E-value=0.027 Score=63.17 Aligned_cols=41 Identities=22% Similarity=0.262 Sum_probs=30.6
Q ss_pred HHHHHHHHHHHhCCCCc-ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++-.+.|..++.+++-. ..|+++|.|+|||.++..++..+.
T Consensus 21 e~v~~~L~~~i~~~ri~Ha~Lf~Gp~G~GKTt~A~~lAr~L~ 62 (824)
T PRK07764 21 EHVTEPLSTALDSGRINHAYLFSGPRGCGKTSSARILARSLN 62 (824)
T ss_pred HHHHHHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHhC
Confidence 44455566667765543 468999999999999999987764
No 247
>PF00004 AAA: ATPase family associated with various cellular activities (AAA); InterPro: IPR003959 AAA ATPases (ATPases Associated with diverse cellular Activities) form a large protein family and play a number of roles in the cell including cell-cycle regulation, protein proteolysis and disaggregation, organelle biogenesis and intracellular transport. Some of them function as molecular chaperones, subunits of proteolytic complexes or independent proteases (FtsH, Lon). They also act as DNA helicases and transcription factors []. AAA ATPases belong to the AAA+ superfamily of ringshaped P-loop NTPases, which act via the energy-dependent unfolding of macromolecules [, ]. There are six major clades of AAA domains (proteasome subunits, metalloproteases, domains D1 and D2 of ATPases with two AAA domains, the MSP1/katanin/spastin group and BCS1 and it homologues), as well as a number of deeply branching minor clades []. They assemble into oligomeric assemblies (often hexamers) that form a ring-shaped structure with a central pore. These proteins produce a molecular motor that couples ATP binding and hydrolysis to changes in conformational states that act upon a target substrate, either translocating or remodelling it []. They are found in all living organisms and share the common feature of the presence of a highly conserved AAA domain called the AAA module. This domain is responsible for ATP binding and hydrolysis. It contains 200-250 residues, among them there are two classical motifs, Walker A (GX4GKT) and Walker B (HyDE) []. The functional variety seen between AAA ATPases is in part due to their extensive number of accessory domains and factors, and to their variable organisation within oligomeric assemblies, in addition to changes in key functional residues within the ATPase domain itself. More information about these proteins can be found at Protein of the Month: AAA ATPases [].; GO: 0005524 ATP binding; PDB: 3H4M_A 1NSF_A 1D2N_A 1HQY_E 1DO0_E 1DO2_C 1G4B_E 1HT1_F 1G4A_F 1HT2_G ....
Probab=96.37 E-value=0.017 Score=49.16 Aligned_cols=34 Identities=15% Similarity=0.166 Sum_probs=28.3
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV 79 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~ 79 (512)
.+|.+|+|+|||..+-.++..++.+++.+.....
T Consensus 1 ill~G~~G~GKT~l~~~la~~l~~~~~~i~~~~~ 34 (132)
T PF00004_consen 1 ILLHGPPGTGKTTLARALAQYLGFPFIEIDGSEL 34 (132)
T ss_dssp EEEESSTTSSHHHHHHHHHHHTTSEEEEEETTHH
T ss_pred CEEECcCCCCeeHHHHHHHhhccccccccccccc
Confidence 3789999999999999999999877777766553
No 248
>PRK09111 DNA polymerase III subunits gamma and tau; Validated
Probab=96.33 E-value=0.026 Score=61.09 Aligned_cols=41 Identities=22% Similarity=0.280 Sum_probs=30.8
Q ss_pred HHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++..+.+..++..++ ++..++.+|.|.|||.++..++..+.
T Consensus 30 ~~~v~~L~~~~~~gri~ha~L~~Gp~GvGKTt~Ar~lAk~L~ 71 (598)
T PRK09111 30 EAMVRTLTNAFETGRIAQAFMLTGVRGVGKTTTARILARALN 71 (598)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHhhC
Confidence 344455556666654 45689999999999999999987764
No 249
>PF13177 DNA_pol3_delta2: DNA polymerase III, delta subunit; PDB: 1NJF_B 3GLG_G 1XXH_I 1NJG_A 3GLF_B 3GLI_G 1IQP_E 2GNO_A 1SXJ_E 1A5T_A ....
Probab=96.33 E-value=0.083 Score=47.26 Aligned_cols=127 Identities=16% Similarity=0.222 Sum_probs=64.6
Q ss_pred HHHHHH---HHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCCCEE--EEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 30 QEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCL--CLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 30 Q~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~~~L--vl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
|.++++ .++.+++ ++..++.+|.|+||+..+..++..+...-. ..|.....+. .+.. ....++..+.
T Consensus 2 q~~~~~~L~~~~~~~~l~ha~L~~G~~g~gk~~~a~~~a~~ll~~~~~~~~c~~c~~c~----~~~~---~~~~d~~~~~ 74 (162)
T PF13177_consen 2 QEEIIELLKNLIKSGRLPHALLFHGPSGSGKKTLALAFARALLCSNPNEDPCGECRSCR----RIEE---GNHPDFIIIK 74 (162)
T ss_dssp -HHHHHHHHHHHHCTC--SEEEEECSTTSSHHHHHHHHHHHHC-TT-CTT--SSSHHHH----HHHT---T-CTTEEEEE
T ss_pred cHHHHHHHHHHHHcCCcceeEEEECCCCCCHHHHHHHHHHHHcCCCCCCCCCCCCHHHH----HHHh---ccCcceEEEe
Confidence 444444 4455554 345699999999999999999977632100 0333333222 2222 1112344443
Q ss_pred CCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhc----CCccEEEEcCCCCCCch---HHHHHHHhcccceEEE
Q 010367 104 SDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRN----REWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLG 176 (512)
Q Consensus 104 ~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~----~~~~lvIiDEaH~~~~~---~~~~~l~~~~~~~~l~ 176 (512)
...... .|-+ + +...+.+++.. ..+.++|+||||.+... .+.+.+..-+...++.
T Consensus 75 ~~~~~~-----~i~i---~----------~ir~i~~~~~~~~~~~~~KviiI~~ad~l~~~a~NaLLK~LEepp~~~~fi 136 (162)
T PF13177_consen 75 PDKKKK-----SIKI---D----------QIREIIEFLSLSPSEGKYKVIIIDEADKLTEEAQNALLKTLEEPPENTYFI 136 (162)
T ss_dssp TTTSSS-----SBSH---H----------HHHHHHHHCTSS-TTSSSEEEEEETGGGS-HHHHHHHHHHHHSTTTTEEEE
T ss_pred cccccc-----hhhH---H----------HHHHHHHHHHHHHhcCCceEEEeehHhhhhHHHHHHHHHHhcCCCCCEEEE
Confidence 332210 1111 1 12233333322 35789999999999976 4555555555566666
Q ss_pred EcccC
Q 010367 177 LTATL 181 (512)
Q Consensus 177 LTATp 181 (512)
|+++-
T Consensus 137 L~t~~ 141 (162)
T PF13177_consen 137 LITNN 141 (162)
T ss_dssp EEES-
T ss_pred EEECC
Confidence 66553
No 250
>PRK14952 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.32 E-value=0.034 Score=59.89 Aligned_cols=41 Identities=22% Similarity=0.242 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCCcc-eEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++-.+.|..++..++-.+ .++++|.|+|||.++..++..+.
T Consensus 19 ~~i~~~L~~~i~~~r~~ha~Lf~Gp~G~GKTt~A~~lAk~l~ 60 (584)
T PRK14952 19 EHVTEPLSSALDAGRINHAYLFSGPRGCGKTSSARILARSLN 60 (584)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 344445556666655444 58999999999999999997765
No 251
>TIGR03420 DnaA_homol_Hda DnaA regulatory inactivator Hda. Members of this protein family are Hda (Homologous to DnaA). These proteins are about half the length of DnaA and homologous over length of Hda. In the model species Escherichia coli, the initiation of DNA replication requires DnaA bound to ATP rather than ADP; Hda helps facilitate the conversion of DnaA-ATP to DnaA-ADP.
Probab=96.31 E-value=0.023 Score=53.70 Aligned_cols=37 Identities=19% Similarity=0.103 Sum_probs=26.5
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.+..+......+..+|.+|+|+|||..+..++...
T Consensus 26 ~~~l~~~~~~~~~~~lll~G~~G~GKT~la~~~~~~~ 62 (226)
T TIGR03420 26 LAALRQLAAGKGDRFLYLWGESGSGKSHLLQAACAAA 62 (226)
T ss_pred HHHHHHHHhcCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3444444434444688999999999999988877654
No 252
>PRK08691 DNA polymerase III subunits gamma and tau; Validated
Probab=96.28 E-value=0.041 Score=59.79 Aligned_cols=41 Identities=20% Similarity=0.236 Sum_probs=29.9
Q ss_pred HHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
+-.+.|..++..++ .+..++++|.|+|||.++..++..+..
T Consensus 23 ~vv~~L~~ai~~~rl~Ha~Lf~GP~GvGKTTlAriLAk~LnC 64 (709)
T PRK08691 23 HVVKALQNALDEGRLHHAYLLTGTRGVGKTTIARILAKSLNC 64 (709)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhcc
Confidence 33445555666654 345699999999999999998887653
No 253
>PRK14961 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.27 E-value=0.051 Score=55.50 Aligned_cols=39 Identities=18% Similarity=0.233 Sum_probs=28.1
Q ss_pred HHHHHH---HHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 30 QEKSLS---KMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 30 Q~~al~---~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
|..++. .++..++- +..++.+|.|+|||.++-.++..+.
T Consensus 21 q~~~~~~l~~~~~~~~~~h~~L~~Gp~G~GKTtla~~la~~l~ 63 (363)
T PRK14961 21 QKHIVTAISNGLSLGRIHHAWLLSGTRGVGKTTIARLLAKSLN 63 (363)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEecCCCCCHHHHHHHHHHHhc
Confidence 555544 44555443 3458999999999999999987765
No 254
>smart00492 HELICc3 helicase superfamily c-terminal domain.
Probab=96.26 E-value=0.029 Score=48.88 Aligned_cols=49 Identities=12% Similarity=0.186 Sum_probs=34.2
Q ss_pred CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccc--cEEEEe
Q 010367 291 PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEA--NVIIQI 339 (512)
Q Consensus 291 ~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~--~~vI~~ 339 (512)
.++.-.....+..+++++|+....-.||+++....+|+|+|+- .+||+.
T Consensus 25 ~i~~e~~~~~~~~~~l~~f~~~~~~~iL~~~~~~~EGiD~~g~~~r~vii~ 75 (141)
T smart00492 25 LLLVQGEDGKETGKLLEKYVEACENAILLATARFSEGVDFPGDYLRAVIID 75 (141)
T ss_pred eEEEeCCChhHHHHHHHHHHHcCCCEEEEEccceecceecCCCCeeEEEEE
Confidence 3333334444678899999986333688888779999999985 466664
No 255
>PF05621 TniB: Bacterial TniB protein; InterPro: IPR008868 This family consists of several bacterial TniB NTP-binding proteins. TniB is a probable ATP-binding protein [] which is involved in Tn5053 mercury resistance transposition [].
Probab=96.25 E-value=0.046 Score=53.34 Aligned_cols=131 Identities=11% Similarity=0.062 Sum_probs=74.2
Q ss_pred CCCcHHHHHHHHHH---HhC---CCCcceEEEcCCCCcHHHHHHHHHHhcC---------CCEE-EEEcChhhHHHHHHH
Q 010367 24 AQPRPYQEKSLSKM---FGN---GRARSGIIVLPCGAGKSLVGVSAACRIK---------KSCL-CLATNAVSVDQWAFQ 87 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~---~~~---~~~~~~il~~~tG~GKTl~~i~~i~~~~---------~~~L-vl~P~~~L~~Qw~~~ 87 (512)
.--+|-=.++++.+ +.. .+..+.+|++++|-|||.+.-.+..... .||+ |-+|...-....+..
T Consensus 36 WIgY~~A~~~L~~L~~Ll~~P~~~Rmp~lLivG~snnGKT~Ii~rF~~~hp~~~d~~~~~~PVv~vq~P~~p~~~~~Y~~ 115 (302)
T PF05621_consen 36 WIGYPRAKEALDRLEELLEYPKRHRMPNLLIVGDSNNGKTMIIERFRRLHPPQSDEDAERIPVVYVQMPPEPDERRFYSA 115 (302)
T ss_pred eecCHHHHHHHHHHHHHHhCCcccCCCceEEecCCCCcHHHHHHHHHHHCCCCCCCCCccccEEEEecCCCCChHHHHHH
Confidence 33445445555543 433 2557899999999999998877765432 1444 445666656666666
Q ss_pred HHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------H
Q 010367 88 FKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------M 161 (512)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~ 161 (512)
+-..++.|-.. . . +...+ .......+......++||||.|++.+. .
T Consensus 116 IL~~lgaP~~~------~--------~-----~~~~~---------~~~~~~llr~~~vrmLIIDE~H~lLaGs~~~qr~ 167 (302)
T PF05621_consen 116 ILEALGAPYRP------R--------D-----RVAKL---------EQQVLRLLRRLGVRMLIIDEFHNLLAGSYRKQRE 167 (302)
T ss_pred HHHHhCcccCC------C--------C-----CHHHH---------HHHHHHHHHHcCCcEEEeechHHHhcccHHHHHH
Confidence 66655544210 0 0 00111 122345565678899999999998643 3
Q ss_pred HHHHHHhcccc--eEEEEcccCC
Q 010367 162 FRKVISLTKSH--CKLGLTATLV 182 (512)
Q Consensus 162 ~~~~l~~~~~~--~~l~LTATp~ 182 (512)
+-.+++.+... .-+.+-||+.
T Consensus 168 ~Ln~LK~L~NeL~ipiV~vGt~~ 190 (302)
T PF05621_consen 168 FLNALKFLGNELQIPIVGVGTRE 190 (302)
T ss_pred HHHHHHHHhhccCCCeEEeccHH
Confidence 33344444332 1233457763
No 256
>PRK07940 DNA polymerase III subunit delta'; Validated
Probab=96.25 E-value=0.043 Score=56.38 Aligned_cols=26 Identities=19% Similarity=0.350 Sum_probs=21.7
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.+..++.+|.|+|||..+..++..+.
T Consensus 36 ~ha~Lf~Gp~G~GKt~lA~~lA~~l~ 61 (394)
T PRK07940 36 THAWLFTGPPGSGRSVAARAFAAALQ 61 (394)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 45678999999999999998887653
No 257
>PF01443 Viral_helicase1: Viral (Superfamily 1) RNA helicase; InterPro: IPR000606 This entry includes RNA and DNA helicases. Some of the members are found in positive-strand single stranded RNA viruses. The helicase has multiple roles at different stages of viral RNA replication, as dissected by mutational analysis [].; GO: 0004386 helicase activity
Probab=96.23 E-value=0.0096 Score=56.58 Aligned_cols=99 Identities=13% Similarity=0.149 Sum_probs=57.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVA 125 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~ 125 (512)
.+|.++.|+|||.....++... ..+.+..|+..+...|. . .. .....-.|.++.+..
T Consensus 1 ~vv~G~pGsGKSt~i~~~~~~~-~~~~~~~~~~~~~~~~~----~--~~----------------~~~~~~~v~s~~~~~ 57 (234)
T PF01443_consen 1 IVVHGVPGSGKSTLIKKLLKDR-LVVTVISPTIELYTEWL----P--DP----------------PSKSVRTVDSFLKAL 57 (234)
T ss_pred CEEEcCCCCCHHHHHHHHHHhc-cccccccccceeccccc----c--cc----------------CCccccEEeEhhhcc
Confidence 3789999999999888888776 23333445555666555 0 00 001112233332211
Q ss_pred ccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcccCCC
Q 010367 126 FGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (512)
Q Consensus 126 ~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~ 183 (512)
.. ....+.+||||++.+.+..+.-++...+... +.|-|=|.+
T Consensus 58 ~~---------------~~~~~~liiDE~~~~~~g~l~~l~~~~~~~~-~~l~GDp~Q 99 (234)
T PF01443_consen 58 VK---------------PKSYDTLIIDEAQLLPPGYLLLLLSLSPAKN-VILFGDPLQ 99 (234)
T ss_pred cc---------------cCcCCEEEEeccccCChHHHHHHHhhccCcc-eEEEECchh
Confidence 10 1247899999999999876665555544443 444576665
No 258
>TIGR00635 ruvB Holliday junction DNA helicase, RuvB subunit. RuvA specifically binds Holliday junctions as a sandwich of two tetramers and maintains the configuration of the junction. It forms a complex with two hexameric rings of RuvB, the subunit that contains helicase activity. The complex drives ATP-dependent branch migration of the Holliday junction recombination intermediate. The endonuclease RuvC resolves junctions.
Probab=96.22 E-value=0.03 Score=55.62 Aligned_cols=43 Identities=14% Similarity=0.118 Sum_probs=28.9
Q ss_pred HHHHHHHHHHHh-----CCCCcceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 28 PYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 28 ~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
....+.+..++. ++...+.++++|+|+|||..+..++..++..
T Consensus 10 ~~~~~~l~~~l~~~~~~~~~~~~~ll~Gp~G~GKT~la~~ia~~~~~~ 57 (305)
T TIGR00635 10 EKVKEQLQLFIEAAKMRQEALDHLLLYGPPGLGKTTLAHIIANEMGVN 57 (305)
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 344444544443 2233568999999999999988887766543
No 259
>PF00580 UvrD-helicase: UvrD/REP helicase N-terminal domain; InterPro: IPR000212 Members of this family are helicases that catalyse ATP dependent unwinding of double stranded DNA to single stranded DNA. THe family includes both Rep and UvrD helcases. The Rep family helicases are composed of four structural domains []. The Rep proteins function as dimers.; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 1UAA_B 1W36_B 3K70_B 2IS6_B 3LFU_A 2IS2_B 2IS1_B 2IS4_A 1QHG_A 1PJR_A ....
Probab=96.22 E-value=0.011 Score=58.62 Aligned_cols=62 Identities=11% Similarity=0.128 Sum_probs=47.0
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---C----CCEEEEEcChhhHHHHHHHHHHhh
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K----KSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~----~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
|.+-|.+++.. ..+ +.+|.+..|||||.+.+.-+..+ + .++|++++|+..+......+...+
T Consensus 1 l~~eQ~~~i~~--~~~---~~lV~a~AGSGKT~~l~~ri~~ll~~~~~~~~~Il~lTft~~aa~e~~~ri~~~l 69 (315)
T PF00580_consen 1 LTDEQRRIIRS--TEG---PLLVNAGAGSGKTTTLLERIAYLLYEGGVPPERILVLTFTNAAAQEMRERIRELL 69 (315)
T ss_dssp S-HHHHHHHHS---SS---EEEEEE-TTSSHHHHHHHHHHHHHHTSSSTGGGEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCHHHHHHHhC--CCC---CEEEEeCCCCCchHHHHHHHHHhhccccCChHHheecccCHHHHHHHHHHHHHhc
Confidence 46789999987 333 78999999999999976554332 2 479999999999998888888754
No 260
>PRK06835 DNA replication protein DnaC; Validated
Probab=96.18 E-value=0.066 Score=53.62 Aligned_cols=59 Identities=24% Similarity=0.258 Sum_probs=38.2
Q ss_pred CCCcHHHHHHHHHH---HhC--CCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHH
Q 010367 24 AQPRPYQEKSLSKM---FGN--GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQ 83 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~---~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Q 83 (512)
..++..+..++..+ ..+ ....+.++.+|||+|||..+.+++..+ +.+|+++ +...|..+
T Consensus 159 ~~~~~~~~~~~~~~~~f~~~f~~~~~~Lll~G~~GtGKThLa~aIa~~l~~~g~~V~y~-t~~~l~~~ 225 (329)
T PRK06835 159 LSPRKNMEKILEKCKNFIENFDKNNENLLFYGNTGTGKTFLSNCIAKELLDRGKSVIYR-TADELIEI 225 (329)
T ss_pred CCHHHHHHHHHHHHHHHHHHHhccCCcEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEE-EHHHHHHH
Confidence 46777877777743 221 122589999999999999988877654 3455544 43444443
No 261
>PRK14974 cell division protein FtsY; Provisional
Probab=96.18 E-value=0.063 Score=53.84 Aligned_cols=113 Identities=19% Similarity=0.123 Sum_probs=60.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcC---hhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN---AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~---~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (512)
.-.++++++|+|||.+...++..+ +.+++++..- .....||...... ++++. +..... .
T Consensus 141 ~vi~~~G~~GvGKTTtiakLA~~l~~~g~~V~li~~Dt~R~~a~eqL~~~a~~-lgv~v-----~~~~~g------~--- 205 (336)
T PRK14974 141 VVIVFVGVNGTGKTTTIAKLAYYLKKNGFSVVIAAGDTFRAGAIEQLEEHAER-LGVKV-----IKHKYG------A--- 205 (336)
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEecCCcCcHHHHHHHHHHHHH-cCCce-----ecccCC------C---
Confidence 456788999999999877666543 3466666532 3445666544443 23321 111100 0
Q ss_pred EEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHhcccc-eEEEEcccCC
Q 010367 118 VTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKSH-CKLGLTATLV 182 (512)
Q Consensus 118 v~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~~~~~-~~l~LTATp~ 182 (512)
.+..+. ...++.......++||+|.+++...+ ..+.+....... ..|.++||..
T Consensus 206 --dp~~v~---------~~ai~~~~~~~~DvVLIDTaGr~~~~~~lm~eL~~i~~~~~pd~~iLVl~a~~g 265 (336)
T PRK14974 206 --DPAAVA---------YDAIEHAKARGIDVVLIDTAGRMHTDANLMDELKKIVRVTKPDLVIFVGDALAG 265 (336)
T ss_pred --CHHHHH---------HHHHHHHHhCCCCEEEEECCCccCCcHHHHHHHHHHHHhhCCceEEEeeccccc
Confidence 011111 11122223356789999999999743 233333333333 4577788764
No 262
>KOG1131 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, 5'-3' helicase subunit RAD3 [Transcription; Replication, recombination and repair]
Probab=96.17 E-value=0.08 Score=54.58 Aligned_cols=40 Identities=18% Similarity=0.258 Sum_probs=29.7
Q ss_pred CCCCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
--.++|-|-+-+..+ +..+ ..|++-+|+|+|||..-+.++
T Consensus 14 Y~~iYPEQ~~YM~elKrsLDak--Gh~llEMPSGTGKTvsLLSli 56 (755)
T KOG1131|consen 14 YDYIYPEQYEYMRELKRSLDAK--GHCLLEMPSGTGKTVSLLSLI 56 (755)
T ss_pred CcccCHHHHHHHHHHHHhhccC--CcEEEECCCCCCcchHHHHHH
Confidence 346788888776654 4333 389999999999998866655
No 263
>PRK14955 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.15 E-value=0.042 Score=56.79 Aligned_cols=41 Identities=17% Similarity=0.139 Sum_probs=30.1
Q ss_pred HHHHHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 29 YQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 29 yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
+-.+.+..++.+++- +..++++|.|+|||.++..++..+..
T Consensus 23 ~~~~~L~~~~~~~~~~ha~lf~Gp~G~GKtt~A~~~a~~l~c 64 (397)
T PRK14955 23 HITRTIQNSLRMGRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (397)
T ss_pred HHHHHHHHHHHhCCcceeEEEECCCCCCHHHHHHHHHHHhcC
Confidence 334455566766543 34779999999999999999877653
No 264
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=96.14 E-value=0.035 Score=61.71 Aligned_cols=92 Identities=14% Similarity=0.222 Sum_probs=54.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l 124 (512)
+.++++|||+|||.++-.++..++.+++.+-- ....+ .....++.|.++..++ |+.
T Consensus 490 ~~Lf~GP~GvGKT~lAk~LA~~l~~~~i~id~-se~~~--~~~~~~LiG~~~gyvg--------------------~~~- 545 (758)
T PRK11034 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRFDM-SEYME--RHTVSRLIGAPPGYVG--------------------FDQ- 545 (758)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCcEEeec-hhhcc--cccHHHHcCCCCCccc--------------------ccc-
Confidence 57899999999999999888888766554432 21111 1123444443332111 000
Q ss_pred hccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc
Q 010367 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (512)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~ 169 (512)
...+.+.+....++++++||+|.+....+..++..+
T Consensus 546 ---------~g~L~~~v~~~p~sVlllDEieka~~~v~~~LLq~l 581 (758)
T PRK11034 546 ---------GGLLTDAVIKHPHAVLLLDEIEKAHPDVFNLLLQVM 581 (758)
T ss_pred ---------cchHHHHHHhCCCcEEEeccHhhhhHHHHHHHHHHH
Confidence 001123333467889999999999877666655544
No 265
>PRK08116 hypothetical protein; Validated
Probab=96.14 E-value=0.065 Score=52.18 Aligned_cols=42 Identities=10% Similarity=0.121 Sum_probs=29.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQ 87 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~ 87 (512)
+.+|.+++|+|||..+.+++..+ +.+++++ +...++..+...
T Consensus 116 gl~l~G~~GtGKThLa~aia~~l~~~~~~v~~~-~~~~ll~~i~~~ 160 (268)
T PRK08116 116 GLLLWGSVGTGKTYLAACIANELIEKGVPVIFV-NFPQLLNRIKST 160 (268)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 58899999999999998888664 3455544 445555544443
No 266
>PRK14963 DNA polymerase III subunits gamma and tau; Provisional
Probab=96.13 E-value=0.045 Score=58.15 Aligned_cols=39 Identities=23% Similarity=0.286 Sum_probs=27.0
Q ss_pred HHHHHH---HHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 30 QEKSLS---KMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 30 Q~~al~---~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
|..++. .++..++- +..++++|.|+|||.++..++..+.
T Consensus 19 q~~v~~~L~~~i~~~~l~ha~Lf~GppGtGKTTlA~~lA~~l~ 61 (504)
T PRK14963 19 QEHVKEVLLAALRQGRLGHAYLFSGPRGVGKTTTARLIAMAVN 61 (504)
T ss_pred hHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHh
Confidence 555444 44555432 3349999999999999988887653
No 267
>PRK05896 DNA polymerase III subunits gamma and tau; Validated
Probab=96.13 E-value=0.024 Score=60.76 Aligned_cols=41 Identities=24% Similarity=0.219 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++-.+.+..++.+++ ++..++.||.|+|||.+|..++..+.
T Consensus 22 e~iv~~L~~aI~~~rl~hA~Lf~GP~GvGKTTlA~~lAk~L~ 63 (605)
T PRK05896 22 ELIKKILVNAILNNKLTHAYIFSGPRGIGKTSIAKIFAKAIN 63 (605)
T ss_pred HHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHhc
Confidence 444455555565543 45678999999999999999987764
No 268
>PRK06893 DNA replication initiation factor; Validated
Probab=96.12 E-value=0.05 Score=51.67 Aligned_cols=31 Identities=13% Similarity=0.037 Sum_probs=22.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
..++++|+|+|||..+.+++... +.+++++.
T Consensus 41 ~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~y~~ 74 (229)
T PRK06893 41 FFYIWGGKSSGKSHLLKAVSNHYLLNQRTAIYIP 74 (229)
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHcCCCeEEee
Confidence 56899999999998877777543 34554443
No 269
>TIGR03877 thermo_KaiC_1 KaiC domain protein, Ph0284 family. Members of this family contain a single copy of the KaiC domain (pfam06745) that occurs in two copies of the circadian clock protein kinase KaiC itself. Members occur primarily in thermophilic archaea and in Thermotoga.
Probab=96.10 E-value=0.06 Score=51.45 Aligned_cols=60 Identities=12% Similarity=0.127 Sum_probs=43.3
Q ss_pred HHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.+.++.++.+| +....+|.+|+|+|||..++.++.. .+.++++++-.. -..|..+.+..+
T Consensus 7 i~~LD~~l~GG~~~gs~~lI~G~pGsGKT~la~~~l~~~~~~ge~~lyvs~ee-~~~~i~~~~~~~ 71 (237)
T TIGR03877 7 IPGMDEILHGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGIYVALEE-HPVQVRRNMAQF 71 (237)
T ss_pred cHhHHHHhcCCCcCCeEEEEEcCCCCCHHHHHHHHHHHHHHcCCcEEEEEeeC-CHHHHHHHHHHh
Confidence 45677777765 3346678899999999998877654 356899998544 477777766654
No 270
>smart00491 HELICc2 helicase superfamily c-terminal domain.
Probab=96.03 E-value=0.026 Score=49.29 Aligned_cols=40 Identities=15% Similarity=0.316 Sum_probs=28.6
Q ss_pred HHHHHHHHHhhCCCC--ccEEEEeCC--CcccccCccc--cEEEEe
Q 010367 300 VERTKILQAFKCSRD--LNTIFLSKV--GDNSIDIPEA--NVIIQI 339 (512)
Q Consensus 300 ~eR~~il~~F~~~~~--~~vlv~t~~--~~~GlDlp~~--~~vI~~ 339 (512)
.+..+++++|+.... -.||+++.- ..+|||+|+- ++||+.
T Consensus 31 ~~~~~~l~~f~~~~~~~g~iL~~v~~G~~~EGiD~~g~~~r~vii~ 76 (142)
T smart00491 31 GETEELLEKYSAACEARGALLLAVARGKVSEGIDFPDDLGRAVIIV 76 (142)
T ss_pred chHHHHHHHHHHhcCCCCEEEEEEeCCeeecceecCCCccEEEEEE
Confidence 355788999997522 147777655 8999999984 567664
No 271
>COG1484 DnaC DNA replication protein [DNA replication, recombination, and repair]
Probab=96.01 E-value=0.088 Score=50.82 Aligned_cols=49 Identities=14% Similarity=0.235 Sum_probs=35.0
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhc--CCCEEEEEcChhhHHHHHHHHHH
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
+..+.++.+|+|.|||..+.+++..+ .+.-+.+++...++.++...+..
T Consensus 104 ~~~nl~l~G~~G~GKThLa~Ai~~~l~~~g~sv~f~~~~el~~~Lk~~~~~ 154 (254)
T COG1484 104 RGENLVLLGPPGVGKTHLAIAIGNELLKAGISVLFITAPDLLSKLKAAFDE 154 (254)
T ss_pred cCCcEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEEHHHHHHHHHHHHhc
Confidence 34599999999999999998887554 23445555666677766665553
No 272
>KOG0738 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=96.01 E-value=0.024 Score=56.51 Aligned_cols=47 Identities=17% Similarity=0.295 Sum_probs=38.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
++.++++|+|+|||+.|=+++.+++ .+.+=+.++.|+.-|.-+=++.
T Consensus 246 kgvLm~GPPGTGKTlLAKAvATEc~-tTFFNVSsstltSKwRGeSEKl 292 (491)
T KOG0738|consen 246 KGVLMVGPPGTGKTLLAKAVATECG-TTFFNVSSSTLTSKWRGESEKL 292 (491)
T ss_pred ceeeeeCCCCCcHHHHHHHHHHhhc-CeEEEechhhhhhhhccchHHH
Confidence 5788999999999999999998887 5666666777888888665553
No 273
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=95.98 E-value=0.046 Score=61.19 Aligned_cols=32 Identities=22% Similarity=0.341 Sum_probs=24.5
Q ss_pred HHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 36 KMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 36 ~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.++......+.++++|+|+|||.++-.++..+
T Consensus 196 ~~L~~~~~~n~lL~G~pG~GKT~l~~~la~~~ 227 (731)
T TIGR02639 196 QVLCRRKKNNPLLVGEPGVGKTAIAEGLALRI 227 (731)
T ss_pred HHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34445555689999999999999987777654
No 274
>PRK00080 ruvB Holliday junction DNA helicase RuvB; Reviewed
Probab=95.94 E-value=0.055 Score=54.45 Aligned_cols=47 Identities=13% Similarity=0.094 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHHh-----CCCCcceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 25 QPRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
.-++...+.+..++. +...++.++.+|+|+|||..+..++..++..+
T Consensus 28 vG~~~~~~~l~~~l~~~~~~~~~~~~~ll~GppG~GKT~la~~ia~~l~~~~ 79 (328)
T PRK00080 28 IGQEKVKENLKIFIEAAKKRGEALDHVLLYGPPGLGKTTLANIIANEMGVNI 79 (328)
T ss_pred cCcHHHHHHHHHHHHHHHhcCCCCCcEEEECCCCccHHHHHHHHHHHhCCCe
Confidence 344455555554443 22345789999999999999998888776443
No 275
>PRK14957 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.93 E-value=0.076 Score=56.74 Aligned_cols=37 Identities=19% Similarity=0.229 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 32 KSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 32 ~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+.+..++..++. +..++.+|.|+|||.++..++..+.
T Consensus 26 ~~L~~~i~~~rl~ha~Lf~Gp~GvGKTTlAr~lAk~L~ 63 (546)
T PRK14957 26 NSLVHALETQKVHHAYLFTGTRGVGKTTLGRLLAKCLN 63 (546)
T ss_pred HHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 345555666543 3468999999999999999987664
No 276
>COG0542 clpA ATP-binding subunits of Clp protease and DnaK/DnaJ chaperones [Posttranslational modification, protein turnover, chaperones]
Probab=95.89 E-value=0.069 Score=58.71 Aligned_cols=109 Identities=14% Similarity=0.225 Sum_probs=72.5
Q ss_pred HHHHHHHHHh----------C-CC-CcceEEEcCCCCcHHHHHHHHHHhcCC--CEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 30 QEKSLSKMFG----------N-GR-ARSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 30 Q~~al~~~~~----------~-~~-~~~~il~~~tG~GKTl~~i~~i~~~~~--~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
|.+|+..+.. . ++ -.++++++|||.|||-.+-+++..+.+ ..+|-..=++-.+ .-.+.+..|.|
T Consensus 496 Qd~AV~avs~aIrraRaGL~dp~rPigsFlF~GPTGVGKTELAkaLA~~Lfg~e~aliR~DMSEy~E--kHsVSrLIGaP 573 (786)
T COG0542 496 QDEAVEAVSDAIRRARAGLGDPNRPIGSFLFLGPTGVGKTELAKALAEALFGDEQALIRIDMSEYME--KHSVSRLIGAP 573 (786)
T ss_pred hHHHHHHHHHHHHHHhcCCCCCCCCceEEEeeCCCcccHHHHHHHHHHHhcCCCccceeechHHHHH--HHHHHHHhCCC
Confidence 8888876521 1 12 247889999999999999999998864 5666555343221 23455666777
Q ss_pred CCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc
Q 010367 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (512)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~ 170 (512)
|.-|+.-.|+. +.+.++.+.+.+|.+||+-..-.+.|.-++..+.
T Consensus 574 PGYVGyeeGG~------------------------------LTEaVRr~PySViLlDEIEKAHpdV~nilLQVlD 618 (786)
T COG0542 574 PGYVGYEEGGQ------------------------------LTEAVRRKPYSVILLDEIEKAHPDVFNLLLQVLD 618 (786)
T ss_pred CCCceeccccc------------------------------hhHhhhcCCCeEEEechhhhcCHHHHHHHHHHhc
Confidence 76655333331 1244445778999999999988887777776653
No 277
>PRK12377 putative replication protein; Provisional
Probab=95.89 E-value=0.051 Score=52.14 Aligned_cols=43 Identities=14% Similarity=0.135 Sum_probs=29.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQ 87 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~ 87 (512)
.+.++.+|+|+|||..+.+++..+ +.++++ ++...|+.+....
T Consensus 102 ~~l~l~G~~GtGKThLa~AIa~~l~~~g~~v~~-i~~~~l~~~l~~~ 147 (248)
T PRK12377 102 TNFVFSGKPGTGKNHLAAAIGNRLLAKGRSVIV-VTVPDVMSRLHES 147 (248)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCeEE-EEHHHHHHHHHHH
Confidence 478999999999999988887654 344544 4445566655443
No 278
>KOG0991 consensus Replication factor C, subunit RFC2 [Replication, recombination and repair]
Probab=95.89 E-value=0.0099 Score=55.09 Aligned_cols=31 Identities=26% Similarity=0.231 Sum_probs=25.1
Q ss_pred hCCCCcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 39 GNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 39 ~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
..+...+.++.+|+|.|||.....++..+-+
T Consensus 44 ~~gnmP~liisGpPG~GKTTsi~~LAr~LLG 74 (333)
T KOG0991|consen 44 KEGNMPNLIISGPPGTGKTTSILCLARELLG 74 (333)
T ss_pred HcCCCCceEeeCCCCCchhhHHHHHHHHHhC
Confidence 3344568999999999999999998877643
No 279
>PRK10919 ATP-dependent DNA helicase Rep; Provisional
Probab=95.86 E-value=0.035 Score=61.37 Aligned_cols=81 Identities=11% Similarity=0.202 Sum_probs=60.2
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.|.|-|.+|+.. ..+ ++++.+..|+|||.+.+.-+..+ + .++|+|+.|+..+....+.+.+.++..
T Consensus 2 ~Ln~~Q~~av~~--~~g---~~lV~AgpGSGKT~vL~~Ria~Li~~~~v~p~~IL~lTFT~kAA~em~~Rl~~~l~~~-- 74 (672)
T PRK10919 2 RLNPGQQQAVEF--VTG---PCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVAQTLGRK-- 74 (672)
T ss_pred CCCHHHHHHHhC--CCC---CEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeeeEechHHHHHHHHHHHHHHhCcc--
Confidence 478899999875 233 78999999999999976555442 2 369999999998998888888764311
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhc
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAF 126 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~ 126 (512)
....+.|.|+..+..
T Consensus 75 --------------~~~~v~i~TfHS~~~ 89 (672)
T PRK10919 75 --------------EARGLMISTFHTLGL 89 (672)
T ss_pred --------------cccCcEEEcHHHHHH
Confidence 012477899888864
No 280
>PRK04195 replication factor C large subunit; Provisional
Probab=95.84 E-value=0.077 Score=56.37 Aligned_cols=52 Identities=15% Similarity=0.174 Sum_probs=37.3
Q ss_pred CCcHHHHHHHHHHHhC---C-CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 25 QPRPYQEKSLSKMFGN---G-RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~---~-~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
...+.+.+.+..|+.. + ..+..+|.+|+|+|||..+-.++..++..++.+-+
T Consensus 17 vg~~~~~~~l~~~l~~~~~g~~~~~lLL~GppG~GKTtla~ala~el~~~~ielna 72 (482)
T PRK04195 17 VGNEKAKEQLREWIESWLKGKPKKALLLYGPPGVGKTSLAHALANDYGWEVIELNA 72 (482)
T ss_pred cCCHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHcCCCEEEEcc
Confidence 3445555666655542 2 24689999999999999999999888766666544
No 281
>PRK14965 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.83 E-value=0.076 Score=57.58 Aligned_cols=41 Identities=17% Similarity=0.209 Sum_probs=30.1
Q ss_pred HHHHHHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++..+.+..++..++- +..++.+|.|+|||.++..++..+.
T Consensus 22 ~~v~~~L~~~i~~~~~~hayLf~Gp~G~GKtt~A~~lak~l~ 63 (576)
T PRK14965 22 EHVSRTLQNAIDTGRVAHAFLFTGARGVGKTSTARILAKALN 63 (576)
T ss_pred HHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 3445666666666543 4458999999999999998887764
No 282
>PRK04328 hypothetical protein; Provisional
Probab=95.83 E-value=0.1 Score=50.31 Aligned_cols=59 Identities=12% Similarity=0.141 Sum_probs=41.6
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..++.++.++ +....+|.+|+|+|||..++.++.. .+.+++++.-.. -..+..+.+..+
T Consensus 10 ~~LD~lL~GGip~gs~ili~G~pGsGKT~l~~~fl~~~~~~ge~~lyis~ee-~~~~i~~~~~~~ 73 (249)
T PRK04328 10 PGMDEILYGGIPERNVVLLSGGPGTGKSIFSQQFLWNGLQMGEPGVYVALEE-HPVQVRRNMRQF 73 (249)
T ss_pred hhHHHHhcCCCcCCcEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEEeeC-CHHHHHHHHHHc
Confidence 4677887764 3346677899999999998877654 356888888544 366666666654
No 283
>cd01121 Sms Sms (bacterial radA) DNA repair protein. This protein is not related to archael radA any more than is to other RecA-like NTPases. Sms has a role in recombination and recombinational repair and is responsible for the stabilization or processing of branched DNA molecules.
Probab=95.83 E-value=0.069 Score=54.48 Aligned_cols=99 Identities=20% Similarity=0.265 Sum_probs=61.4
Q ss_pred HHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010367 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (512)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~ 105 (512)
...++.++.++ ...-.+|.+++|+|||..++.++... +++++++...- ...|......++ +....+
T Consensus 68 i~eLD~vLgGGi~~GslvLI~G~pG~GKStLllq~a~~~a~~g~~VlYvs~EE-s~~qi~~Ra~rl-g~~~~~------- 138 (372)
T cd01121 68 IEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGGKVLYVSGEE-SPEQIKLRADRL-GISTEN------- 138 (372)
T ss_pred CHHHHHhhcCCccCCeEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEECCc-CHHHHHHHHHHc-CCCccc-------
Confidence 44566777654 22456788999999999988777543 45888887643 466766655554 333222
Q ss_pred ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
+.+..... ...+.+.+...+.++||||+.+.+.
T Consensus 139 ----------l~l~~e~~----------le~I~~~i~~~~~~lVVIDSIq~l~ 171 (372)
T cd01121 139 ----------LYLLAETN----------LEDILASIEELKPDLVIIDSIQTVY 171 (372)
T ss_pred ----------EEEEccCc----------HHHHHHHHHhcCCcEEEEcchHHhh
Confidence 22221111 2233445555688999999998763
No 284
>PF05876 Terminase_GpA: Phage terminase large subunit (GpA); InterPro: IPR008866 This entry is represented by Bacteriophage lambda, GpA. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. This entry consists of several phage terminase large subunit proteins as well as related sequences from several bacterial species. The DNA packaging enzyme of bacteriophage lambda, terminase, is a heteromultimer composed of a small subunit, gpNu1, and a large subunit, gpA, products of the Nu1 and A genes, respectively. Terminase is involved in the site-specific binding and cutting of the DNA in the initial stages of packaging. It is now known that gpA is actively involved in late stages of packaging, including DNA translocation, and that this enzyme contains separate functional domains for its early and late packaging activities [].
Probab=95.82 E-value=0.05 Score=58.65 Aligned_cols=147 Identities=15% Similarity=0.151 Sum_probs=93.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHH-HHHHhhCCCCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAF-QFKLWSTIQDD 97 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~-~~~~~~~~~~~ 97 (512)
.....|||.+.++.+-... -+..++..+.-+|||.+++.++... ..++|++.|+..++..|.+ .|...+.-.+.
T Consensus 14 ~~~~~Py~~eimd~~~~~~-v~~Vv~~k~aQ~GkT~~~~n~~g~~i~~~P~~~l~v~Pt~~~a~~~~~~rl~Pmi~~sp~ 92 (557)
T PF05876_consen 14 RTDRTPYLREIMDALSDPS-VREVVVMKSAQVGKTELLLNWIGYSIDQDPGPMLYVQPTDDAAKDFSKERLDPMIRASPV 92 (557)
T ss_pred CCCCChhHHHHHHhcCCcC-ccEEEEEEcchhhHhHHHHhhceEEEEeCCCCEEEEEEcHHHHHHHHHHHHHHHHHhCHH
Confidence 3578999999999765443 4578889999999999888877543 4799999999999999884 45443221111
Q ss_pred cEEEEcC------Cc---cccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--------
Q 010367 98 QICRFTS------DS---KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-------- 160 (512)
Q Consensus 98 ~v~~~~~------~~---~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-------- 160 (512)
--..+.. +. ...+. ...+.+....+-. .|......++++||++.++..
T Consensus 93 l~~~~~~~~~~~~~~t~~~k~f~-gg~l~~~ga~S~~--------------~l~s~~~r~~~~DEvD~~p~~~~~eGdp~ 157 (557)
T PF05876_consen 93 LRRKLSPSKSRDSGNTILYKRFP-GGFLYLVGANSPS--------------NLRSRPARYLLLDEVDRYPDDVGGEGDPV 157 (557)
T ss_pred HHHHhCchhhcccCCchhheecC-CCEEEEEeCCCCc--------------ccccCCcCEEEEechhhccccCccCCCHH
Confidence 0111111 10 01122 3445555443332 233467889999999999642
Q ss_pred -HHHHHHHhcccceEEEEcccCCCCc
Q 010367 161 -MFRKVISLTKSHCKLGLTATLVRED 185 (512)
Q Consensus 161 -~~~~~l~~~~~~~~l~LTATp~~~~ 185 (512)
...+-...+....++++..||....
T Consensus 158 ~la~~R~~tf~~~~K~~~~STPt~~~ 183 (557)
T PF05876_consen 158 ELAEKRTKTFGSNRKILRISTPTIEG 183 (557)
T ss_pred HHHHHHHhhhccCcEEEEeCCCCCCC
Confidence 1222223334567899999998763
No 285
>cd01124 KaiC KaiC is a circadian clock protein primarily found in cyanobacteria KaiC is a RecA-like ATPase, having both Walker A and Walker B motifs. A related protein is found in archaea.
Probab=95.80 E-value=0.067 Score=48.78 Aligned_cols=45 Identities=11% Similarity=0.057 Sum_probs=34.5
Q ss_pred eEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 46 GIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.+|.+|+|+|||..++.++. ..+.+++++...- ...+..+.+..+
T Consensus 2 ~li~G~~G~GKT~l~~~~~~~~~~~g~~v~~~s~e~-~~~~~~~~~~~~ 49 (187)
T cd01124 2 TLLSGGPGTGKTTFALQFLYAGLARGEPGLYVTLEE-SPEELIENAESL 49 (187)
T ss_pred EEEEcCCCCCHHHHHHHHHHHHHHCCCcEEEEECCC-CHHHHHHHHHHc
Confidence 57899999999999877664 3467899887654 477777777665
No 286
>PRK05642 DNA replication initiation factor; Validated
Probab=95.79 E-value=0.077 Score=50.60 Aligned_cols=32 Identities=19% Similarity=0.087 Sum_probs=22.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
...+|++|+|+|||..+.+++.. .+.+++++.
T Consensus 46 ~~l~l~G~~G~GKTHLl~a~~~~~~~~~~~v~y~~ 80 (234)
T PRK05642 46 SLIYLWGKDGVGRSHLLQAACLRFEQRGEPAVYLP 80 (234)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEee
Confidence 46789999999999886555432 234565554
No 287
>PRK05563 DNA polymerase III subunits gamma and tau; Validated
Probab=95.77 E-value=0.099 Score=56.45 Aligned_cols=42 Identities=19% Similarity=0.258 Sum_probs=29.7
Q ss_pred cHHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 27 RPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.++-.+.+..++..++ ++..++++|.|+|||.++-.++..+.
T Consensus 21 q~~v~~~L~~~i~~~~~~hayLf~Gp~GtGKTt~Ak~lAkal~ 63 (559)
T PRK05563 21 QEHITKTLKNAIKQGKISHAYLFSGPRGTGKTSAAKIFAKAVN 63 (559)
T ss_pred cHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444555666666553 34567899999999999988886653
No 288
>PF00265 TK: Thymidine kinase; InterPro: IPR001267 Thymidine kinase (TK) (2.7.1.21 from EC) is an ubiquitous enzyme that catalyzes the ATP-dependent phosphorylation of thymidine. Two different families of Thymidine kinase have been identified [, ] and are represented in this entry; one groups together Thymidine kinase from herpesviruses, as well as cytosolic thymidylate kinases and the second family groups Thymidine kinase from various sources that include, vertebrates, bacteria, the Bacteriophage T4, poxviruses, African swine fever virus (ASFV) and Fish lymphocystis disease virus (FLDV). The major capsid protein of insect iridescent viruses also belongs to this family.; GO: 0004797 thymidine kinase activity, 0005524 ATP binding; PDB: 1XX6_B 2J9R_A 2J87_B 3E2I_A 2JA1_A 2UZ3_B 2B8T_B 2WVJ_A 1W4R_F 1XBT_F ....
Probab=95.76 E-value=0.1 Score=47.24 Aligned_cols=34 Identities=24% Similarity=0.147 Sum_probs=26.9
Q ss_pred eEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChh
Q 010367 46 GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (512)
-++.+||+||||...+..+.+ .+++++++-|...
T Consensus 4 ~~i~GpM~sGKS~eLi~~~~~~~~~~~~v~~~kp~~D 40 (176)
T PF00265_consen 4 EFITGPMFSGKSTELIRRIHRYEIAGKKVLVFKPAID 40 (176)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEEESTS
T ss_pred EEEECCcCChhHHHHHHHHHHHHhCCCeEEEEEeccc
Confidence 478899999999988877754 3678999999765
No 289
>PHA02244 ATPase-like protein
Probab=95.76 E-value=0.11 Score=52.33 Aligned_cols=44 Identities=11% Similarity=0.170 Sum_probs=34.1
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
+...+.+++..+ .+.+|.+|+|+|||..+-.++..++.+++.+.
T Consensus 108 ~~~ri~r~l~~~--~PVLL~GppGtGKTtLA~aLA~~lg~pfv~In 151 (383)
T PHA02244 108 ETADIAKIVNAN--IPVFLKGGAGSGKNHIAEQIAEALDLDFYFMN 151 (383)
T ss_pred HHHHHHHHHhcC--CCEEEECCCCCCHHHHHHHHHHHhCCCEEEEe
Confidence 334445566655 38999999999999999998888888877664
No 290
>PRK06871 DNA polymerase III subunit delta'; Validated
Probab=95.74 E-value=0.1 Score=52.02 Aligned_cols=43 Identities=14% Similarity=0.216 Sum_probs=32.1
Q ss_pred CCcHHHHHHHHHH---HhCCC-CcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 25 QPRPYQEKSLSKM---FGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 25 ~Lr~yQ~~al~~~---~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.++|||......+ +..++ ++..++.+|.|.||+..+..++..+
T Consensus 2 ~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~G~~G~GK~~lA~~~A~~l 48 (325)
T PRK06871 2 ALYPWLQPTYQQITQAFQQGLGHHALLFKADSGLGTEQLIRALAQWL 48 (325)
T ss_pred CCCcchHHHHHHHHHHHHcCCcceeEEeECCCCCCHHHHHHHHHHHH
Confidence 3578888777765 44444 3566789999999999998888665
No 291
>PRK14948 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.66 E-value=0.1 Score=56.88 Aligned_cols=37 Identities=22% Similarity=0.215 Sum_probs=27.5
Q ss_pred HHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 33 SLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 33 al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
.|..++..++ .+..++.+|.|+|||.++..++..+..
T Consensus 27 ~L~~~l~~~rl~~a~Lf~Gp~G~GKttlA~~lAk~L~c 64 (620)
T PRK14948 27 TLKNALISNRIAPAYLFTGPRGTGKTSSARILAKSLNC 64 (620)
T ss_pred HHHHHHHcCCCCceEEEECCCCCChHHHHHHHHHHhcC
Confidence 3444555543 356789999999999999999987753
No 292
>TIGR03117 cas_csf4 CRISPR-associated DEAD/DEAH-box helicase Csf4. Members of this family show up near CRISPR repeats in Acidithiobacillus ferrooxidans ATCC 23270, Azoarcus sp. EbN1, and Rhodoferax ferrireducens DSM 15236. In the latter two species, the CRISPR/cas locus is found on a plasmid. This family is one of several characteristic of a type of CRISPR-associated (cas) gene cluster we designate Aferr after A. ferrooxidans, where it is both chromosomal and the only type of cas gene cluster found. The gene is designated csf4 (CRISPR/cas Subtype as in A. ferrooxidans protein 1), as it lies farthest (fourth closest) from the repeats in the A. ferrooxidans genome.
Probab=95.65 E-value=0.11 Score=56.38 Aligned_cols=61 Identities=16% Similarity=0.135 Sum_probs=47.9
Q ss_pred HHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHh-----cCCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACR-----IKKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 30 Q~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~-----~~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
|.+.+..+. .++ ...++.++||+|||++++.++.. .++++||++||++|..|+.+++..+.
T Consensus 2 Q~~~~~~i~~al~~~--~~lliEA~TGtGKTlAYLlpal~~~~~~~~~rvlIstpT~~Lq~Ql~~~l~~l~ 70 (636)
T TIGR03117 2 QALFYLNCLTSLRQK--RIGMLEASTGVGKTLAMIMAALTMLKERPDQKIAIAVPTLALMGQLWSELERLT 70 (636)
T ss_pred HHHHHHHHHHHHhcC--CeEEEEcCCCCcHHHHHHHHHHHHHHhccCceEEEECCcHHHHHHHHHHHHHHH
Confidence 666666553 333 37888899999999999887743 25799999999999999998877654
No 293
>PRK06921 hypothetical protein; Provisional
Probab=95.65 E-value=0.053 Score=52.71 Aligned_cols=39 Identities=18% Similarity=0.138 Sum_probs=27.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQ 83 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Q 83 (512)
.+.++.+++|+|||..+.+++..+ +..++++. ...++.+
T Consensus 118 ~~l~l~G~~G~GKThLa~aia~~l~~~~g~~v~y~~-~~~l~~~ 160 (266)
T PRK06921 118 NSIALLGQPGSGKTHLLTAAANELMRKKGVPVLYFP-FVEGFGD 160 (266)
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHhhhcCceEEEEE-HHHHHHH
Confidence 579999999999999988877654 33455544 3444443
No 294
>PRK14722 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=95.64 E-value=0.14 Score=52.08 Aligned_cols=111 Identities=17% Similarity=0.153 Sum_probs=59.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc----C-CCEEEEEcChh--hHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI----K-KSCLCLATNAV--SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGV 116 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~----~-~~~Lvl~P~~~--L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~I 116 (512)
...++++|||+|||.++..++... + .++.++..-.- -..+....+.+..+++ + .
T Consensus 138 ~ii~lvGptGvGKTTtiakLA~~~~~~~G~~~V~lit~D~~R~ga~EqL~~~a~~~gv~---~----------------~ 198 (374)
T PRK14722 138 GVFALMGPTGVGKTTTTAKLAARCVMRFGASKVALLTTDSYRIGGHEQLRIFGKILGVP---V----------------H 198 (374)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEecccccccHHHHHHHHHHHcCCc---e----------------E
Confidence 478899999999999988777542 2 35555542221 1222233333333322 1 1
Q ss_pred EEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHHHHHHhcc-----cceEEEEcccCCCCc
Q 010367 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISLTK-----SHCKLGLTATLVRED 185 (512)
Q Consensus 117 vv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~~~l~~~~-----~~~~l~LTATp~~~~ 185 (512)
.+.+...+. ..+..+ .+.++|+||++=+...+ .....+..+. ....|.|+||-...+
T Consensus 199 ~~~~~~~l~----------~~l~~l--~~~DlVLIDTaG~~~~d~~l~e~La~L~~~~~~~~~lLVLsAts~~~~ 261 (374)
T PRK14722 199 AVKDGGDLQ----------LALAEL--RNKHMVLIDTIGMSQRDRTVSDQIAMLHGADTPVQRLLLLNATSHGDT 261 (374)
T ss_pred ecCCcccHH----------HHHHHh--cCCCEEEEcCCCCCcccHHHHHHHHHHhccCCCCeEEEEecCccChHH
Confidence 122222221 123333 46789999999877643 3333333331 235788899986443
No 295
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.64 E-value=0.12 Score=63.68 Aligned_cols=137 Identities=13% Similarity=0.115 Sum_probs=82.1
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH---HhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.+.|-+-|.+|+..++.... +-.+|.++.|+|||.+.-.++ ...+.++++++|+...+....++.. +....+
T Consensus 427 ~~~Ls~~Q~~Av~~il~s~~-~v~ii~G~aGTGKTt~l~~l~~~~~~~G~~V~~lAPTgrAA~~L~e~~g----~~A~Ti 501 (1960)
T TIGR02760 427 EFALSPSNKDAVSTLFTSTK-RFIIINGFGGTGSTEIAQLLLHLASEQGYEIQIITAGSLSAQELRQKIP----RLASTF 501 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-CeEEEEECCCCCHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHhc----chhhhH
Confidence 46789999999999887632 478899999999998854444 3446789999999976665554421 111111
Q ss_pred EEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc-cceEEEEc
Q 010367 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCKLGLT 178 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~-~~~~l~LT 178 (512)
..+.... . ......|.+.+.... ..+ ..-+++|||||.++....+..++.... ...+|.|-
T Consensus 502 ~~~l~~l---~---~~~~~~tv~~fl~~~----------~~l--~~~~vlIVDEAsMl~~~~~~~Ll~~a~~~garvVlv 563 (1960)
T TIGR02760 502 ITWVKNL---F---NDDQDHTVQGLLDKS----------SPF--SNKDIFVVDEANKLSNNELLKLIDKAEQHNSKLILL 563 (1960)
T ss_pred HHHHHhh---c---ccccchhHHHhhccc----------CCC--CCCCEEEEECCCCCCHHHHHHHHHHHhhcCCEEEEE
Confidence 0000000 0 000111222121100 000 345799999999999998888887653 44566655
Q ss_pred ccCC
Q 010367 179 ATLV 182 (512)
Q Consensus 179 ATp~ 182 (512)
|=+.
T Consensus 564 GD~~ 567 (1960)
T TIGR02760 564 NDSA 567 (1960)
T ss_pred cChh
Confidence 5443
No 296
>PRK00149 dnaA chromosomal replication initiation protein; Reviewed
Probab=95.64 E-value=0.11 Score=54.79 Aligned_cols=40 Identities=15% Similarity=0.125 Sum_probs=26.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQW 84 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw 84 (512)
.+.+|.+|+|+|||..+-+++..+ +.+++++ +...+...+
T Consensus 149 ~~l~l~G~~G~GKThL~~ai~~~~~~~~~~~~v~yi-~~~~~~~~~ 193 (450)
T PRK00149 149 NPLFIYGGVGLGKTHLLHAIGNYILEKNPNAKVVYV-TSEKFTNDF 193 (450)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEE-EHHHHHHHH
Confidence 468899999999999987777554 2345555 334444433
No 297
>PRK03992 proteasome-activating nucleotidase; Provisional
Probab=95.63 E-value=0.041 Score=56.73 Aligned_cols=35 Identities=17% Similarity=0.301 Sum_probs=28.7
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.+++.++.+|+|+|||.++-+++...+.+++.+..
T Consensus 164 ~p~gvLL~GppGtGKT~lAkaia~~~~~~~i~v~~ 198 (389)
T PRK03992 164 PPKGVLLYGPPGTGKTLLAKAVAHETNATFIRVVG 198 (389)
T ss_pred CCCceEEECCCCCChHHHHHHHHHHhCCCEEEeeh
Confidence 34678999999999999999999888877666543
No 298
>PRK08769 DNA polymerase III subunit delta'; Validated
Probab=95.63 E-value=0.1 Score=52.04 Aligned_cols=44 Identities=25% Similarity=0.425 Sum_probs=34.3
Q ss_pred CCCcHHHHHHHHHHH---hCCC-CcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 24 AQPRPYQEKSLSKMF---GNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~---~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-.++|+|..+...+. ..++ ++..++.+|.|.||+..+..++..+
T Consensus 3 ~~~yPW~~~~~~~l~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~lA~~L 50 (319)
T PRK08769 3 SAFSPWQQRAYDQTVAALDAGRLGHGLLICGPEGLGKRAVALALAEHV 50 (319)
T ss_pred ccccccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 367899999988764 3443 3457899999999999998888665
No 299
>PRK00440 rfc replication factor C small subunit; Reviewed
Probab=95.59 E-value=0.18 Score=50.34 Aligned_cols=42 Identities=14% Similarity=0.139 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++.+.+.+..++.++...+.++.+|+|+|||.++-.++..+.
T Consensus 22 ~~~~~~~l~~~i~~~~~~~~ll~G~~G~GKt~~~~~l~~~l~ 63 (319)
T PRK00440 22 QEEIVERLKSYVKEKNMPHLLFAGPPGTGKTTAALALARELY 63 (319)
T ss_pred cHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHHc
Confidence 444556666666665445689999999999999888877653
No 300
>PRK14712 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.59 E-value=0.21 Score=59.42 Aligned_cols=127 Identities=11% Similarity=0.081 Sum_probs=78.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHH---HHhc----CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSA---ACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~---i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
..|.+-|++|+..++.... +-.+|.+..|+|||.+.-.+ +..+ +..++.++||...+.... . .+++.
T Consensus 834 ~~Lt~~Qr~Av~~iLts~d-r~~~IqG~AGTGKTT~l~~i~~~~~~l~e~~g~~V~glAPTgkAa~~L~----e-~Gi~A 907 (1623)
T PRK14712 834 EKLTSGQRAATRMILETSD-RFTVVQGYAGVGKTTQFRAVMSAVNMLPESERPRVVGLGPTHRAVGEMR----S-AGVDA 907 (1623)
T ss_pred cccCHHHHHHHHHHHhCCC-ceEEEEeCCCCCHHHHHHHHHHHHHHHhhccCceEEEEechHHHHHHHH----H-hCchH
Confidence 4789999999999987532 37889999999999985333 3222 346888999887555432 2 23322
Q ss_pred CcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhccc-ceEE
Q 010367 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKL 175 (512)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~-~~~l 175 (512)
..| ..+...... .. ....-.....+++|||||-++.+..+..++..+.. ..++
T Consensus 908 ~TI----------------------asfL~~~~~---~~-~~~~~~~~~~~llIVDEASMV~~~~m~~ll~~~~~~garv 961 (1623)
T PRK14712 908 QTL----------------------ASFLHDTQL---QQ-RSGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 961 (1623)
T ss_pred hhH----------------------HHHhccccc---hh-hcccCCCCCCcEEEEEccccccHHHHHHHHHhhhhCCCEE
Confidence 111 111110000 00 00000012347999999999999988888877654 3677
Q ss_pred EEcccCC
Q 010367 176 GLTATLV 182 (512)
Q Consensus 176 ~LTATp~ 182 (512)
.|-|=+.
T Consensus 962 VLVGD~~ 968 (1623)
T PRK14712 962 VASGDTD 968 (1623)
T ss_pred EEEcchh
Confidence 7777654
No 301
>CHL00181 cbbX CbbX; Provisional
Probab=95.58 E-value=0.061 Score=52.94 Aligned_cols=23 Identities=22% Similarity=0.151 Sum_probs=19.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+.++.+|+|+|||.+|-.++..+
T Consensus 61 ~ill~G~pGtGKT~lAr~la~~~ 83 (287)
T CHL00181 61 HMSFTGSPGTGKTTVALKMADIL 83 (287)
T ss_pred eEEEECCCCCCHHHHHHHHHHHH
Confidence 46899999999999988876543
No 302
>PRK11054 helD DNA helicase IV; Provisional
Probab=95.56 E-value=0.028 Score=61.98 Aligned_cols=80 Identities=19% Similarity=0.269 Sum_probs=60.7
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-------CCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
...|.+.|.+|+.. ..+ +.+|.+..|+|||.+.+.-+..+ ..++|+++.++..+....+.+...++.
T Consensus 194 ~~~L~~~Q~~av~~--~~~---~~lV~agaGSGKT~vl~~r~ayLl~~~~~~~~~IL~ltft~~AA~em~eRL~~~lg~- 267 (684)
T PRK11054 194 SSPLNPSQARAVVN--GED---SLLVLAGAGSGKTSVLVARAGWLLARGQAQPEQILLLAFGRQAAEEMDERIRERLGT- 267 (684)
T ss_pred CCCCCHHHHHHHhC--CCC---CeEEEEeCCCCHHHHHHHHHHHHHHhCCCCHHHeEEEeccHHHHHHHHHHHHHhcCC-
Confidence 46799999999873 222 67899999999999987766432 247999999999888888888876431
Q ss_pred CCcEEEEcCCccccccCCCeEEEEchhhhhc
Q 010367 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAF 126 (512)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~ 126 (512)
..|.|.|+..+..
T Consensus 268 ------------------~~v~v~TFHSlal 280 (684)
T PRK11054 268 ------------------EDITARTFHALAL 280 (684)
T ss_pred ------------------CCcEEEeHHHHHH
Confidence 2477888888764
No 303
>PRK11823 DNA repair protein RadA; Provisional
Probab=95.56 E-value=0.093 Score=55.03 Aligned_cols=99 Identities=19% Similarity=0.261 Sum_probs=62.7
Q ss_pred HHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010367 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (512)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~ 105 (512)
...++.++.++ ...-.+|.+++|+|||..++.++... +.+++++.-.- ...|+.....++ +.+..+
T Consensus 66 i~~LD~~LgGGi~~Gs~~lI~G~pG~GKTtL~lq~a~~~a~~g~~vlYvs~Ee-s~~qi~~ra~rl-g~~~~~------- 136 (446)
T PRK11823 66 IGELDRVLGGGLVPGSVVLIGGDPGIGKSTLLLQVAARLAAAGGKVLYVSGEE-SASQIKLRAERL-GLPSDN------- 136 (446)
T ss_pred cHHHHHHhcCCccCCEEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccc-cHHHHHHHHHHc-CCChhc-------
Confidence 35567777754 23456788999999999988877654 56889988644 466776665553 332211
Q ss_pred ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
+.+..... ...+.+.+...+.++||+|+.+.+.
T Consensus 137 ----------l~~~~e~~----------l~~i~~~i~~~~~~lVVIDSIq~l~ 169 (446)
T PRK11823 137 ----------LYLLAETN----------LEAILATIEEEKPDLVVIDSIQTMY 169 (446)
T ss_pred ----------EEEeCCCC----------HHHHHHHHHhhCCCEEEEechhhhc
Confidence 22221111 2334455555678999999998764
No 304
>TIGR00362 DnaA chromosomal replication initiator protein DnaA. DnaA is involved in DNA biosynthesis; initiation of chromosome replication and can also be transcription regulator. The C-terminal of the family hits the pfam bacterial DnaA (bac_dnaA) domain family. For a review, see Kaguni (2006).
Probab=95.50 E-value=0.11 Score=53.87 Aligned_cols=31 Identities=16% Similarity=0.133 Sum_probs=23.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~ 75 (512)
..+|.+|+|+|||..+.+++..+ +.+++++.
T Consensus 138 ~l~l~G~~G~GKThL~~ai~~~l~~~~~~~~v~yi~ 173 (405)
T TIGR00362 138 PLFIYGGVGLGKTHLLHAIGNEILENNPNAKVVYVS 173 (405)
T ss_pred eEEEECCCCCcHHHHHHHHHHHHHHhCCCCcEEEEE
Confidence 56899999999999987776554 24566653
No 305
>TIGR01075 uvrD DNA helicase II. Designed to identify uvrD members of the uvrD/rep subfamily.
Probab=95.42 E-value=0.058 Score=60.32 Aligned_cols=81 Identities=12% Similarity=0.168 Sum_probs=60.7
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.|.|-|++|+.. ..+ +++|.+..|+|||.+...-+..+ + ..+|+|+.|...+....+.+.+..+..
T Consensus 4 ~Ln~~Q~~av~~--~~g---~~lV~AgaGSGKT~~L~~Ria~Li~~~~v~p~~IL~lTFTnkAA~em~~Rl~~~~~~~-- 76 (715)
T TIGR01075 4 GLNDKQREAVAA--PPG---NLLVLAGAGSGKTRVLTHRIAWLLSVENASPHSIMAVTFTNKAAAEMRHRIGALLGTS-- 76 (715)
T ss_pred ccCHHHHHHHcC--CCC---CEEEEecCCCCHHHHHHHHHHHHHHcCCCCHHHeEeeeccHHHHHHHHHHHHHHhccc--
Confidence 488999999874 223 78999999999999976555432 2 369999999988999999888864311
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhcc
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~ 127 (512)
...+.|.|+..+...
T Consensus 77 ---------------~~~~~i~TfHs~~~~ 91 (715)
T TIGR01075 77 ---------------ARGMWIGTFHGLAHR 91 (715)
T ss_pred ---------------ccCcEEEcHHHHHHH
Confidence 124678999888753
No 306
>PRK13709 conjugal transfer nickase/helicase TraI; Provisional
Probab=95.42 E-value=0.15 Score=61.30 Aligned_cols=127 Identities=12% Similarity=0.085 Sum_probs=78.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---c----CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---I----KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
..|.+-|++|+..++... .+-.+|.+..|+|||.+.-.++.. + +..++.++||.-.+.... . .+++.
T Consensus 966 ~~Lt~~Q~~Av~~il~s~-dr~~~I~G~AGTGKTT~l~~v~~~~~~l~~~~~~~V~glAPTgrAAk~L~----e-~Gi~A 1039 (1747)
T PRK13709 966 EGLTSGQRAATRMILEST-DRFTVVQGYAGVGKTTQFRAVMSAVNTLPESERPRVVGLGPTHRAVGEMR----S-AGVDA 1039 (1747)
T ss_pred CCCCHHHHHHHHHHHhCC-CcEEEEEeCCCCCHHHHHHHHHHHHHHhhcccCceEEEECCcHHHHHHHH----h-cCcch
Confidence 468999999999998753 147889999999999885444322 1 246888999987555432 2 23321
Q ss_pred CcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhccc-ceEE
Q 010367 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS-HCKL 175 (512)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~-~~~l 175 (512)
.|...+...... ... ........-+++||||+-++.+..+..++..+.. ..++
T Consensus 1040 ----------------------~TI~s~L~~~~~---~~~-~~~~~~~~~~llIVDEaSMv~~~~m~~Ll~~~~~~garv 1093 (1747)
T PRK13709 1040 ----------------------QTLASFLHDTQL---QQR-SGETPDFSNTLFLLDESSMVGNTDMARAYALIAAGGGRA 1093 (1747)
T ss_pred ----------------------hhHHHHhccccc---ccc-cccCCCCCCcEEEEEccccccHHHHHHHHHhhhcCCCEE
Confidence 122222111000 000 0000012347999999999999988888887764 4677
Q ss_pred EEcccCC
Q 010367 176 GLTATLV 182 (512)
Q Consensus 176 ~LTATp~ 182 (512)
.|-|=+.
T Consensus 1094 VLVGD~~ 1100 (1747)
T PRK13709 1094 VSSGDTD 1100 (1747)
T ss_pred EEecchH
Confidence 7777543
No 307
>TIGR02928 orc1/cdc6 family replication initiation protein. Members of this protein family are found exclusively in the archaea. This set of DNA binding proteins shows homology to the origin recognition complex subunit 1/cell division control protein 6 family in eukaryotes. Several members may be found in genome and interact with each other.
Probab=95.41 E-value=0.19 Score=51.25 Aligned_cols=45 Identities=22% Similarity=0.194 Sum_probs=34.2
Q ss_pred CCCCcHHHHHHHHHHHh----CCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.=|..|.+.+...+. ++...+.+|.+|+|+|||.++-.++..+
T Consensus 16 ~l~gRe~e~~~l~~~l~~~~~~~~~~~i~I~G~~GtGKT~l~~~~~~~l 64 (365)
T TIGR02928 16 RIVHRDEQIEELAKALRPILRGSRPSNVFIYGKTGTGKTAVTKYVMKEL 64 (365)
T ss_pred CCCCcHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 45668888888887654 3344589999999999999987777543
No 308
>cd01120 RecA-like_NTPases RecA-like NTPases. This family includes the NTP binding domain of F1 and V1 H+ATPases, DnaB and related helicases as well as bacterial RecA and related eukaryotic and archaeal recombinases. This group also includes bacterial conjugation proteins and related DNA transfer proteins involved in type II and type IV secretion.
Probab=95.40 E-value=0.076 Score=46.77 Aligned_cols=35 Identities=17% Similarity=0.264 Sum_probs=26.6
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVS 80 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L 80 (512)
.+|.+|+|+|||..+..++... +.+++++......
T Consensus 2 ~~i~G~~G~GKT~l~~~i~~~~~~~~~~v~~~~~e~~~ 39 (165)
T cd01120 2 ILVFGPTGSGKTTLALQLALNIATKGGKVVYVDIEEEI 39 (165)
T ss_pred eeEeCCCCCCHHHHHHHHHHHHHhcCCEEEEEECCcch
Confidence 4789999999999987777554 4678777765543
No 309
>COG1222 RPT1 ATP-dependent 26S proteasome regulatory subunit [Posttranslational modification, protein turnover, chaperones]
Probab=95.39 E-value=0.05 Score=53.82 Aligned_cols=76 Identities=17% Similarity=0.297 Sum_probs=52.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEch
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~ 121 (512)
.+++.++.+|+|+|||+.|=+.+.+....+|=++- ++|++ +|.|-. +.
T Consensus 184 PPKGVLLYGPPGTGKTLLAkAVA~~T~AtFIrvvg-SElVq-------KYiGEG------------------aR------ 231 (406)
T COG1222 184 PPKGVLLYGPPGTGKTLLAKAVANQTDATFIRVVG-SELVQ-------KYIGEG------------------AR------ 231 (406)
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCceEEEecc-HHHHH-------HHhccc------------------hH------
Confidence 56789999999999999999999888877776664 55565 443210 00
Q ss_pred hhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 122 ~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
+ ...++..-+......|.+||.+.+.+.
T Consensus 232 -l----------VRelF~lArekaPsIIFiDEIDAIg~k 259 (406)
T COG1222 232 -L----------VRELFELAREKAPSIIFIDEIDAIGAK 259 (406)
T ss_pred -H----------HHHHHHHHhhcCCeEEEEechhhhhcc
Confidence 0 223344444467889999999998854
No 310
>COG1419 FlhF Flagellar GTP-binding protein [Cell motility and secretion]
Probab=95.37 E-value=0.41 Score=48.63 Aligned_cols=113 Identities=24% Similarity=0.230 Sum_probs=64.6
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEE-cCh--hhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCC
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA-TNA--VSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNA 114 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~-P~~--~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~ 114 (512)
.+-..|++|||.|||.+-.-++++. +++|-+|. .+- ..++| .+.+.+.+++|
T Consensus 203 ~~vi~LVGPTGVGKTTTlAKLAar~~~~~~~~kVaiITtDtYRIGA~EQ-Lk~Ya~im~vp------------------- 262 (407)
T COG1419 203 KRVIALVGPTGVGKTTTLAKLAARYVMLKKKKKVAIITTDTYRIGAVEQ-LKTYADIMGVP------------------- 262 (407)
T ss_pred CcEEEEECCCCCcHHHHHHHHHHHHHhhccCcceEEEEeccchhhHHHH-HHHHHHHhCCc-------------------
Confidence 3578899999999999876666543 23554444 322 22333 22333333433
Q ss_pred eEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HH----HHHHHhc-ccceEEEEcccCCCCcch
Q 010367 115 GVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MF----RKVISLT-KSHCKLGLTATLVREDER 187 (512)
Q Consensus 115 ~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~----~~~l~~~-~~~~~l~LTATp~~~~~~ 187 (512)
-.++.++.-|. ..+..+ .+.++|.||=+-+-.-+ .. ...+... .....|.||||-..+|.+
T Consensus 263 ~~vv~~~~el~----------~ai~~l--~~~d~ILVDTaGrs~~D~~~i~el~~~~~~~~~i~~~Lvlsat~K~~dlk 329 (407)
T COG1419 263 LEVVYSPKELA----------EAIEAL--RDCDVILVDTAGRSQYDKEKIEELKELIDVSHSIEVYLVLSATTKYEDLK 329 (407)
T ss_pred eEEecCHHHHH----------HHHHHh--hcCCEEEEeCCCCCccCHHHHHHHHHHHhccccceEEEEEecCcchHHHH
Confidence 24555665543 224444 56799999988776533 22 2222221 234568899998766544
No 311
>PRK06964 DNA polymerase III subunit delta'; Validated
Probab=95.36 E-value=0.14 Score=51.42 Aligned_cols=42 Identities=14% Similarity=0.119 Sum_probs=32.7
Q ss_pred CcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
++|||....+.+... .-++..++.+|.|.||+..+..++..+
T Consensus 2 ~yPW~~~~~~~l~~~~~rl~ha~Lf~Gp~G~GK~~lA~~~A~~L 45 (342)
T PRK06964 2 LYPWQTDDWNRLQALRARLPHALLLHGQAGIGKLDFAQHLAQGL 45 (342)
T ss_pred CCcccHHHHHHHHHhcCCcceEEEEECCCCCCHHHHHHHHHHHH
Confidence 578988888877542 224567789999999999998888665
No 312
>PF13173 AAA_14: AAA domain
Probab=95.36 E-value=0.17 Score=43.16 Aligned_cols=31 Identities=23% Similarity=0.248 Sum_probs=23.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC--CCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK--KSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl 74 (512)
+-.+|.+|.|+|||.....++.... ..++++
T Consensus 3 ~~~~l~G~R~vGKTtll~~~~~~~~~~~~~~yi 35 (128)
T PF13173_consen 3 KIIILTGPRGVGKTTLLKQLAKDLLPPENILYI 35 (128)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhcccccceee
Confidence 3678999999999998888887665 445544
No 313
>TIGR01650 PD_CobS cobaltochelatase, CobS subunit. This model describes the aerobic cobalamin pathway Pseudomonas denitrificans CobS gene product, which is a cobalt chelatase subunit, with a MW ~37 kDa. The aerobic pathway cobalt chelatase is a heterotrimeric, ATP-dependent enzyme that catalyzes cobalt insertion during cobalamin biosynthesis. The other two subunits are the P. denitrificans CobT (TIGR01651) and CobN (pfam02514 CobN/Magnesium Chelatase) proteins. To avoid potential confusion with the nonhomologous Salmonella typhimurium/E.coli cobS gene product, the P. denitrificans gene symbol is not used in the name of this model.
Probab=95.33 E-value=0.28 Score=48.77 Aligned_cols=56 Identities=20% Similarity=0.205 Sum_probs=43.3
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
.+.+.+.+--..++-..+..+ ++.+|.+|+|+|||..+-.++..++.+++-|.-+.
T Consensus 44 d~~y~f~~~~~~~vl~~l~~~--~~ilL~G~pGtGKTtla~~lA~~l~~~~~rV~~~~ 99 (327)
T TIGR01650 44 DPAYLFDKATTKAICAGFAYD--RRVMVQGYHGTGKSTHIEQIAARLNWPCVRVNLDS 99 (327)
T ss_pred CCCccCCHHHHHHHHHHHhcC--CcEEEEeCCCChHHHHHHHHHHHHCCCeEEEEecC
Confidence 445777777777777666554 38999999999999999999999988876655333
No 314
>PTZ00293 thymidine kinase; Provisional
Probab=95.32 E-value=0.13 Score=47.71 Aligned_cols=35 Identities=20% Similarity=0.259 Sum_probs=27.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (512)
=-++.+||++|||..-+..+.+ .+++++++-|...
T Consensus 6 i~vi~GpMfSGKTteLLr~i~~y~~ag~kv~~~kp~~D 43 (211)
T PTZ00293 6 ISVIIGPMFSGKTTELMRLVKRFTYSEKKCVVIKYSKD 43 (211)
T ss_pred EEEEECCCCChHHHHHHHHHHHHHHcCCceEEEEeccc
Confidence 3478999999999877776654 3678999999764
No 315
>PRK06647 DNA polymerase III subunits gamma and tau; Validated
Probab=95.31 E-value=0.17 Score=54.56 Aligned_cols=40 Identities=20% Similarity=0.256 Sum_probs=29.1
Q ss_pred HHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+-.+.+..++.+++ ++..++++|.|.|||.++-.++..+.
T Consensus 23 ~iv~~L~~~i~~~~i~hayLf~Gp~G~GKTt~Ar~lAk~L~ 63 (563)
T PRK06647 23 FVVETLKHSIESNKIANAYIFSGPRGVGKTSSARAFARCLN 63 (563)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHhhc
Confidence 34445555566554 34578999999999999998887764
No 316
>PRK11773 uvrD DNA-dependent helicase II; Provisional
Probab=95.29 E-value=0.07 Score=59.68 Aligned_cols=81 Identities=15% Similarity=0.185 Sum_probs=60.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.|.|-|++|+... .+ ..+|.+..|||||.+...-+..+ + ..+|+|+-|+..+....+.+.+..+..
T Consensus 9 ~Ln~~Q~~av~~~--~g---~~lV~AgaGSGKT~vl~~Ria~Li~~~~v~p~~IL~lTFT~kAA~Em~~Rl~~~~~~~-- 81 (721)
T PRK11773 9 SLNDKQREAVAAP--LG---NMLVLAGAGSGKTRVLVHRIAWLMQVENASPYSIMAVTFTNKAAAEMRHRIEQLLGTS-- 81 (721)
T ss_pred hcCHHHHHHHhCC--CC---CEEEEecCCCCHHHHHHHHHHHHHHcCCCChhHeEeeeccHHHHHHHHHHHHHHhccC--
Confidence 5889999998742 23 78999999999999976555432 2 469999999998999999888864311
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhcc
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~ 127 (512)
...+.|.|+..+...
T Consensus 82 ---------------~~~~~i~TfHs~~~~ 96 (721)
T PRK11773 82 ---------------QGGMWVGTFHGLAHR 96 (721)
T ss_pred ---------------CCCCEEEcHHHHHHH
Confidence 124678999888753
No 317
>PRK09112 DNA polymerase III subunit delta'; Validated
Probab=95.28 E-value=0.2 Score=50.75 Aligned_cols=39 Identities=21% Similarity=0.290 Sum_probs=27.9
Q ss_pred HHHHHHH---HHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 30 QEKSLSK---MFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 30 Q~~al~~---~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
|.++... .+..++ ++..++.+|.|.|||..+..++..+.
T Consensus 28 h~~a~~~L~~a~~~grl~ha~L~~G~~G~GKttlA~~lA~~Ll 70 (351)
T PRK09112 28 HEEAEAFLAQAYREGKLHHALLFEGPEGIGKATLAFHLANHIL 70 (351)
T ss_pred cHHHHHHHHHHHHcCCCCeeEeeECCCCCCHHHHHHHHHHHHc
Confidence 4444443 455554 34578899999999999998887664
No 318
>PRK06067 flagellar accessory protein FlaH; Validated
Probab=95.28 E-value=0.11 Score=49.40 Aligned_cols=60 Identities=18% Similarity=0.211 Sum_probs=42.9
Q ss_pred HHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
...++.++.++ .....++.+++|+|||..+..++.. .+.+++++.-... ..+..+.+..+
T Consensus 11 i~~LD~~l~gG~~~g~~~~i~G~~GsGKt~l~~~~~~~~~~~g~~~~y~~~e~~-~~~~~~~~~~~ 75 (234)
T PRK06067 11 NEELDRKLGGGIPFPSLILIEGDHGTGKSVLSQQFVYGALKQGKKVYVITTENT-SKSYLKQMESV 75 (234)
T ss_pred CHHHHHhhCCCCcCCcEEEEECCCCCChHHHHHHHHHHHHhCCCEEEEEEcCCC-HHHHHHHHHHC
Confidence 45677777665 2345677799999999998887643 3568888886544 66777777765
No 319
>PRK00411 cdc6 cell division control protein 6; Reviewed
Probab=95.27 E-value=0.28 Score=50.65 Aligned_cols=45 Identities=20% Similarity=0.158 Sum_probs=33.0
Q ss_pred CCCCcHHHHHHHHHHH----hCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 23 HAQPRPYQEKSLSKMF----GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~----~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.=|+-|.+.+...+ .++...+.+|.+|+|+|||.+.-.++..+
T Consensus 31 ~l~~Re~e~~~l~~~l~~~~~~~~~~~~lI~G~~GtGKT~l~~~v~~~l 79 (394)
T PRK00411 31 NLPHREEQIEELAFALRPALRGSRPLNVLIYGPPGTGKTTTVKKVFEEL 79 (394)
T ss_pred CCCCHHHHHHHHHHHHHHHhCCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3445677777776654 23344679999999999999988887655
No 320
>PTZ00454 26S protease regulatory subunit 6B-like protein; Provisional
Probab=95.24 E-value=0.069 Score=55.04 Aligned_cols=35 Identities=17% Similarity=0.304 Sum_probs=29.3
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.+++.++.+|+|+|||+.+-+++.....+++.+.+
T Consensus 178 ~pkgvLL~GppGTGKT~LAkalA~~l~~~fi~i~~ 212 (398)
T PTZ00454 178 PPRGVLLYGPPGTGKTMLAKAVAHHTTATFIRVVG 212 (398)
T ss_pred CCceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 35688999999999999999988888877766654
No 321
>TIGR02760 TraI_TIGR conjugative transfer relaxase protein TraI. This protein is a component of the relaxosome complex. In the process of conjugative plasmid transfer the realaxosome binds to the plasmid at the oriT (origin of transfer) site. The relaxase protein TraI mediates the single-strand nicking and ATP-dependent unwinding (relaxation, helicase activity) of the plasmid molecule. These two activities reside in separate domains of the protein.
Probab=95.24 E-value=0.098 Score=64.28 Aligned_cols=126 Identities=13% Similarity=0.091 Sum_probs=78.9
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHH---HHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVS---AACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~---~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
...|.+.|++|+..++.... +-.+|.++.|+|||.+... ++.. .+.+++.++|+...+.... . .++.
T Consensus 1017 ~~~Lt~~Q~~Ai~~il~~~~-~~~~i~G~AGtGKTt~l~~~~~~i~~~~~~~g~~v~glApT~~Aa~~L~----~-~g~~ 1090 (1960)
T TIGR02760 1017 LERLTHGQKQAIHLIISTKD-RFVAVQGLAGVGKTTMLESRYKPVLQAFESEQLQVIGLAPTHEAVGELK----S-AGVQ 1090 (1960)
T ss_pred cCCCCHHHHHHHHHHHhCCC-cEEEEEeCCCCCHHHhHHHHHHHHHHHHHhcCCeEEEEeChHHHHHHHH----h-cCCc
Confidence 46799999999999887532 3678889999999988732 2221 2457889999987555443 2 2332
Q ss_pred CCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc-cceE
Q 010367 96 DDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK-SHCK 174 (512)
Q Consensus 96 ~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~-~~~~ 174 (512)
.. |..++....... ..-.. .....++|||||-++.+..+..++.... +..+
T Consensus 1091 a~----------------------Ti~s~l~~~~~~----~~~~~--~~~~~v~ivDEasMv~~~~~~~l~~~~~~~~ak 1142 (1960)
T TIGR02760 1091 AQ----------------------TLDSFLTDISLY----RNSGG--DFRNTLFILDESSMVSNFQLTHATELVQKSGSR 1142 (1960)
T ss_pred hH----------------------hHHHHhcCcccc----cccCC--CCcccEEEEEccccccHHHHHHHHHhccCCCCE
Confidence 21 112111100000 00000 1345799999999999999988887653 4467
Q ss_pred EEEcccCC
Q 010367 175 LGLTATLV 182 (512)
Q Consensus 175 l~LTATp~ 182 (512)
+.|-|=+.
T Consensus 1143 ~vlvGD~~ 1150 (1960)
T TIGR02760 1143 AVSLGDIA 1150 (1960)
T ss_pred EEEeCChh
Confidence 77777654
No 322
>TIGR02012 tigrfam_recA protein RecA. This model describes orthologs of the recA protein. RecA promotes hybridization of homolgous regions of DNA. A segment of ssDNA can be hybridized to another ssDNA region, or to a dsDNA region. ATP is hydrolyzed in the process. Part of the SOS respones, it is regulated by LexA via autocatalytic cleavage.
Probab=95.23 E-value=0.12 Score=51.48 Aligned_cols=54 Identities=20% Similarity=0.197 Sum_probs=37.7
Q ss_pred HHHHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHH
Q 010367 30 QEKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQ 83 (512)
Q Consensus 30 Q~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Q 83 (512)
=..+|+.++. ++ +.+-..|.+|+|+|||..++.++.. .+++++++-....+-.+
T Consensus 39 Gi~~LD~~Lg~GGlp~G~iteI~G~~GsGKTtLaL~~~~~~~~~g~~v~yId~E~~~~~~ 98 (321)
T TIGR02012 39 GSLSLDLALGVGGLPRGRIIEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDPV 98 (321)
T ss_pred CCHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEcccchhHHH
Confidence 3466778887 54 2345678899999999998877654 35788888765554443
No 323
>PRK08451 DNA polymerase III subunits gamma and tau; Validated
Probab=95.19 E-value=0.24 Score=52.85 Aligned_cols=37 Identities=24% Similarity=0.193 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCc-ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 31 EKSLSKMFGNGRAR-SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 31 ~~al~~~~~~~~~~-~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.+..++..++-. ..++++|.|+|||.++..++..+
T Consensus 23 ~~~L~~~I~~grl~hayLf~Gp~G~GKTt~Ar~LAk~L 60 (535)
T PRK08451 23 SKTLSLALDNNRLAHAYLFSGLRGSGKTSSARIFARAL 60 (535)
T ss_pred HHHHHHHHHcCCCCeeEEEECCCCCcHHHHHHHHHHHh
Confidence 34555566665433 44899999999999998888765
No 324
>PHA03368 DNA packaging terminase subunit 1; Provisional
Probab=95.18 E-value=0.15 Score=54.83 Aligned_cols=127 Identities=13% Similarity=0.170 Sum_probs=77.6
Q ss_pred CCCcceEEEcCCCCcHHHHHHHHHH----h-cCCCEEEEEcChhhHHHHHHHHHHhhC--CCCCcEEEEcCCccc--ccc
Q 010367 41 GRARSGIIVLPCGAGKSLVGVSAAC----R-IKKSCLCLATNAVSVDQWAFQFKLWST--IQDDQICRFTSDSKE--RFR 111 (512)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~----~-~~~~~Lvl~P~~~L~~Qw~~~~~~~~~--~~~~~v~~~~~~~~~--~~~ 111 (512)
.+++..++..|=-.|||......+. . .+.++++++|....+....+++..++. .++..+....|. .- .+.
T Consensus 252 fkqk~tVflVPRR~GKTwivv~iI~~ll~s~~Gi~IgytAH~~~ts~~vF~eI~~~le~~f~~~~v~~vkGe-~I~i~f~ 330 (738)
T PHA03368 252 FRQRATVFLVPRRHGKTWFLVPLIALALATFRGIKIGYTAHIRKATEPVFEEIGARLRQWFGASRVDHVKGE-TISFSFP 330 (738)
T ss_pred hhccceEEEecccCCchhhHHHHHHHHHHhCCCCEEEEEcCcHHHHHHHHHHHHHHHhhhcchhheeeecCc-EEEEEec
Confidence 3556889999999999986543332 2 366899999999877777776655321 223333333331 11 111
Q ss_pred -CC-CeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc--cceEEEEcccCC
Q 010367 112 -GN-AGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK--SHCKLGLTATLV 182 (512)
Q Consensus 112 -~~-~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~--~~~~l~LTATp~ 182 (512)
+. ..|.+.+- .+ ...++...++++|+|||+.++...+..++-.+. ....|.+|-|-.
T Consensus 331 nG~kstI~FaSa---rn-----------tNsiRGqtfDLLIVDEAqFIk~~al~~ilp~l~~~n~k~I~ISS~Ns 391 (738)
T PHA03368 331 DGSRSTIVFASS---HN-----------TNGIRGQDFNLLFVDEANFIRPDAVQTIMGFLNQTNCKIIFVSSTNT 391 (738)
T ss_pred CCCccEEEEEec---cC-----------CCCccCCcccEEEEechhhCCHHHHHHHHHHHhccCccEEEEecCCC
Confidence 11 23333311 11 122345789999999999999998888875543 345677776643
No 325
>PRK05703 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=95.16 E-value=0.22 Score=51.87 Aligned_cols=112 Identities=22% Similarity=0.227 Sum_probs=57.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv 118 (512)
+..++++|+|+|||.++..++..+ +.++.+|.--.- ...-..++..|.......+ ..+
T Consensus 222 ~~i~~vGptGvGKTTt~~kLA~~~~~~~~g~~V~li~~D~~-r~~a~eqL~~~a~~~~vp~----------------~~~ 284 (424)
T PRK05703 222 GVVALVGPTGVGKTTTLAKLAARYALLYGKKKVALITLDTY-RIGAVEQLKTYAKIMGIPV----------------EVV 284 (424)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCCeEEEEECCcc-HHHHHHHHHHHHHHhCCce----------------Ecc
Confidence 467888999999999877666432 245666552210 0001123333322111001 111
Q ss_pred EchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHh--cccceEEEEcccCCCC
Q 010367 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISL--TKSHCKLGLTATLVRE 184 (512)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~--~~~~~~l~LTATp~~~ 184 (512)
.++..+ ...+..+ ..+++||||-+-+.... .+..++.. ......|.|+||....
T Consensus 285 ~~~~~l----------~~~l~~~--~~~DlVlIDt~G~~~~d~~~~~~L~~ll~~~~~~~~~~LVl~a~~~~~ 345 (424)
T PRK05703 285 YDPKEL----------AKALEQL--RDCDVILIDTAGRSQRDKRLIEELKALIEFSGEPIDVYLVLSATTKYE 345 (424)
T ss_pred CCHHhH----------HHHHHHh--CCCCEEEEeCCCCCCCCHHHHHHHHHHHhccCCCCeEEEEEECCCCHH
Confidence 222222 1223333 46899999999876643 33444441 1224568899998643
No 326
>PRK14953 DNA polymerase III subunits gamma and tau; Provisional
Probab=95.15 E-value=0.18 Score=53.40 Aligned_cols=36 Identities=22% Similarity=0.195 Sum_probs=25.8
Q ss_pred HHHHHHhCCCCcc-eEEEcCCCCcHHHHHHHHHHhcC
Q 010367 33 SLSKMFGNGRARS-GIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 33 al~~~~~~~~~~~-~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.+..++.+++-.+ .++++|.|+|||.++..++..+.
T Consensus 27 ~L~~~i~~~~i~hayLf~Gp~G~GKTtlAr~lAk~L~ 63 (486)
T PRK14953 27 ILKNAVKLQRVSHAYIFAGPRGTGKTTIARILAKVLN 63 (486)
T ss_pred HHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 3444555544333 57899999999999988887765
No 327
>TIGR01074 rep ATP-dependent DNA helicase Rep. Designed to identify rep members of the uvrD/rep subfamily.
Probab=95.15 E-value=0.11 Score=57.64 Aligned_cols=81 Identities=11% Similarity=0.187 Sum_probs=59.6
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
|.|-|.+++.. ..+ ++++.+..|+|||.+.+.-+..+ + ..+|+|+.+...+.+..+.+.+.++..
T Consensus 2 Ln~~Q~~av~~--~~~---~~~V~Ag~GSGKT~~L~~ri~~ll~~~~~~p~~IL~vTFt~~Aa~em~~Rl~~~l~~~--- 73 (664)
T TIGR01074 2 LNPQQQEAVEY--VTG---PCLVLAGAGSGKTRVITNKIAYLIQNCGYKARNIAAVTFTNKAAREMKERVAKTLGKG--- 73 (664)
T ss_pred CCHHHHHHHhC--CCC---CEEEEecCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhCcc---
Confidence 67889998874 233 78999999999999976655432 1 368999888888999999888765311
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhcc
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~ 127 (512)
....+.|.|+..+...
T Consensus 74 -------------~~~~v~v~TfHs~a~~ 89 (664)
T TIGR01074 74 -------------EARGLTISTFHTLGLD 89 (664)
T ss_pred -------------ccCCeEEEeHHHHHHH
Confidence 1235789999888653
No 328
>cd00983 recA RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange.
Probab=95.05 E-value=0.11 Score=51.61 Aligned_cols=57 Identities=19% Similarity=0.250 Sum_probs=40.8
Q ss_pred HHHHHHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHH
Q 010367 28 PYQEKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQW 84 (512)
Q Consensus 28 ~yQ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw 84 (512)
|--..+|+.++. ++ +.+-..|.+|+|+|||..++.++.. .++++++|.+.-.+-.++
T Consensus 37 sTGi~~LD~~Lg~GGlp~G~iteI~Gp~GsGKTtLal~~~~~~~~~g~~~vyId~E~~~~~~~ 99 (325)
T cd00983 37 PTGSLSLDIALGIGGYPKGRIIEIYGPESSGKTTLALHAIAEAQKLGGTVAFIDAEHALDPVY 99 (325)
T ss_pred cCCCHHHHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEECccccHHHHH
Confidence 334567788887 54 2345678899999999999887744 367899988776655443
No 329
>PRK07133 DNA polymerase III subunits gamma and tau; Validated
Probab=95.04 E-value=0.2 Score=55.04 Aligned_cols=40 Identities=18% Similarity=0.243 Sum_probs=28.9
Q ss_pred HHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...+.+..++..++ ++..+++||.|.|||.++-.++..+.
T Consensus 25 ~~v~~L~~aI~~~rl~HAYLF~GP~GtGKTt~AriLAk~Ln 65 (725)
T PRK07133 25 HIVQTLKNIIKSNKISHAYLFSGPRGTGKTSVAKIFANALN 65 (725)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCcHHHHHHHHHHHhc
Confidence 33445556666654 34568999999999999988887654
No 330
>CHL00095 clpC Clp protease ATP binding subunit
Probab=95.03 E-value=0.06 Score=61.03 Aligned_cols=41 Identities=22% Similarity=0.337 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|+.+.+-+-.++......+.++++|+|.|||.++-.++..+
T Consensus 184 r~~ei~~~~~~L~r~~~~n~lL~G~pGvGKTal~~~la~~i 224 (821)
T CHL00095 184 REKEIERVIQILGRRTKNNPILIGEPGVGKTAIAEGLAQRI 224 (821)
T ss_pred cHHHHHHHHHHHcccccCCeEEECCCCCCHHHHHHHHHHHH
Confidence 55555555556665555689999999999999987777654
No 331
>PRK06090 DNA polymerase III subunit delta'; Validated
Probab=94.98 E-value=0.25 Score=49.20 Aligned_cols=44 Identities=11% Similarity=0.100 Sum_probs=33.5
Q ss_pred CCCcHHHHHHHHHH---HhCCC-CcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 24 AQPRPYQEKSLSKM---FGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~---~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+.++|+|......+ +..++ ++..++.+|.|.||+..+..++..+
T Consensus 2 ~~~yPWl~~~~~~l~~~~~~~rl~hA~L~~G~~G~Gk~~lA~~~a~~l 49 (319)
T PRK06090 2 NNDYPWLVPVWQNWKAGLDAGRIPGALLLQSDEGLGVESLVELFSRAL 49 (319)
T ss_pred CcCcccHHHHHHHHHHHHHcCCcceeEeeECCCCCCHHHHHHHHHHHH
Confidence 45788888887765 33443 4567889999999999998888665
No 332
>TIGR02880 cbbX_cfxQ probable Rubsico expression protein CbbX. Proteins in this family are now designated CbbX. Some previously were CfxQ (carbon fixation Q). Its gene is often found immmediately downstream of the Rubisco large and small chain genes, and it is suggested to be necessary for Rubisco expression. CbbX has been shown to be necessary for photoautotrophic growth. This protein belongs to the larger family of pfam00004, ATPase family Associated with various cellular Activities. Within that larger family, members of this family are most closely related to the stage V sporulation protein K, or SpoVK, in endospore-forming bacteria such as Bacillus subtilis.
Probab=94.98 E-value=0.094 Score=51.55 Aligned_cols=24 Identities=21% Similarity=0.104 Sum_probs=19.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.++.+|+|+|||.+|-.++..+
T Consensus 59 ~~vll~G~pGTGKT~lA~~ia~~l 82 (284)
T TIGR02880 59 LHMSFTGNPGTGKTTVALRMAQIL 82 (284)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHH
Confidence 367899999999999986666443
No 333
>PF01695 IstB_IS21: IstB-like ATP binding protein; InterPro: IPR002611 Proteins in this entry contain an ATP/GTP binding P-loop motif. They are found associated with IS21 family insertion sequences []. Functionally they have not been characterised, but they may be involved in transposition [].; GO: 0005524 ATP binding; PDB: 3EC2_A 3ECC_A 2W58_A 2QGZ_A.
Probab=94.93 E-value=0.024 Score=51.56 Aligned_cols=32 Identities=28% Similarity=0.325 Sum_probs=23.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.+.++.+|+|+|||..+.+++..+ +.+++++.
T Consensus 48 ~~l~l~G~~G~GKThLa~ai~~~~~~~g~~v~f~~ 82 (178)
T PF01695_consen 48 ENLILYGPPGTGKTHLAVAIANEAIRKGYSVLFIT 82 (178)
T ss_dssp -EEEEEESTTSSHHHHHHHHHHHHHHTT--EEEEE
T ss_pred eEEEEEhhHhHHHHHHHHHHHHHhccCCcceeEee
Confidence 589999999999999988887443 45666654
No 334
>PRK08533 flagellar accessory protein FlaH; Reviewed
Probab=94.91 E-value=0.15 Score=48.52 Aligned_cols=47 Identities=17% Similarity=0.070 Sum_probs=32.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
...++.+|+|+|||..+..++... +.++++++.... ..+..+.+..+
T Consensus 25 ~~~~i~G~~G~GKTtl~~~~~~~~~~~g~~~~yi~~e~~-~~~~~~~~~~~ 74 (230)
T PRK08533 25 SLILIEGDESTGKSILSQRLAYGFLQNGYSVSYVSTQLT-TTEFIKQMMSL 74 (230)
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEeCCCC-HHHHHHHHHHh
Confidence 467888999999999987666543 468888885443 45555555443
No 335
>COG0470 HolB ATPase involved in DNA replication [DNA replication, recombination, and repair]
Probab=94.88 E-value=0.2 Score=50.09 Aligned_cols=113 Identities=12% Similarity=0.168 Sum_probs=58.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCE--EEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSC--LCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~--Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~ 122 (512)
..++.+|.|+|||..+..++..+.+.. -.-++... .-...+.. + ...++..+....... .+|++ +
T Consensus 26 alL~~Gp~G~Gktt~a~~lA~~l~~~~~~~~~~~~~~---~~~~~~~~--~-~~~d~lel~~s~~~~----~~i~~---~ 92 (325)
T COG0470 26 ALLFYGPPGVGKTTAALALAKELLCENPTGLLPCGHC---RSCKLIPA--G-NHPDFLELNPSDLRK----IDIIV---E 92 (325)
T ss_pred eeeeeCCCCCCHHHHHHHHHHHHhCCCcccCCcccch---hhhhHHhh--c-CCCceEEecccccCC----CcchH---H
Confidence 489999999999999999998875311 11111110 00011111 1 111333333332211 11111 2
Q ss_pred hhhccCCCchhHHHHHHHHhc----CCccEEEEcCCCCCCch---HHHHHHHhcccceEEEEccc
Q 010367 123 MVAFGGKRSEESEKIIEEIRN----REWGLLLMDEVHVVPAH---MFRKVISLTKSHCKLGLTAT 180 (512)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~----~~~~lvIiDEaH~~~~~---~~~~~l~~~~~~~~l~LTAT 180 (512)
.+ ..+.+.+.. ..+.+||+|||+.+... .+.+.+..-+...++.|++.
T Consensus 93 ~v----------r~~~~~~~~~~~~~~~kviiidead~mt~~A~nallk~lEep~~~~~~il~~n 147 (325)
T COG0470 93 QV----------RELAEFLSESPLEGGYKVVIIDEADKLTEDAANALLKTLEEPPKNTRFILITN 147 (325)
T ss_pred HH----------HHHHHHhccCCCCCCceEEEeCcHHHHhHHHHHHHHHHhccCCCCeEEEEEcC
Confidence 22 122222221 46789999999999865 55555555556666777665
No 336
>PRK14950 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.23 Score=54.03 Aligned_cols=36 Identities=22% Similarity=0.335 Sum_probs=26.0
Q ss_pred HHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 33 SLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 33 al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.+..++..++- +..|+.+|.|+|||.++..++..+.
T Consensus 27 ~L~~~i~~~~i~~a~Lf~Gp~G~GKTtlA~~lA~~l~ 63 (585)
T PRK14950 27 TLRNAIAEGRVAHAYLFTGPRGVGKTSTARILAKAVN 63 (585)
T ss_pred HHHHHHHhCCCceEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34444555432 3458999999999999999987764
No 337
>PRK14954 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.87 E-value=0.25 Score=53.83 Aligned_cols=36 Identities=17% Similarity=0.101 Sum_probs=27.2
Q ss_pred HHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 34 l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
+..++.+++ ++..|+++|.|.|||.++..++..+..
T Consensus 28 L~~~i~~~ri~ha~Lf~Gp~GvGKttlA~~lAk~L~c 64 (620)
T PRK14954 28 IQNSLRMDRVGHGYIFSGLRGVGKTTAARVFAKAVNC 64 (620)
T ss_pred HHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhCC
Confidence 444555554 345789999999999999999887754
No 338
>TIGR02237 recomb_radB DNA repair and recombination protein RadB. This family consists exclusively of archaeal RadB protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239) and DMC1 (TIGR02238), and archaeal RadA (TIGR02236).
Probab=94.86 E-value=0.16 Score=47.28 Aligned_cols=43 Identities=26% Similarity=0.383 Sum_probs=31.0
Q ss_pred HHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcCh
Q 010367 36 KMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (512)
Q Consensus 36 ~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~ 78 (512)
.++.++ ...-..|.+|+|+|||..++.++.. .+.+++++....
T Consensus 3 ~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~~~~~~~~g~~v~yi~~e~ 50 (209)
T TIGR02237 3 ELLGGGVERGTITQIYGPPGSGKTNICMILAVNAARQGKKVVYIDTEG 50 (209)
T ss_pred hhhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC
Confidence 455554 2345678899999999998887754 356788888754
No 339
>TIGR02397 dnaX_nterm DNA polymerase III, subunit gamma and tau. This model represents the well-conserved first ~ 365 amino acids of the translation of the dnaX gene. The full-length product of the dnaX gene in the model bacterium E. coli is the DNA polymerase III tau subunit. A translational frameshift leads to early termination and a truncated protein subunit gamma, about 1/3 shorter than tau and present in roughly equal amounts. This frameshift mechanism is not necessarily universal for species with DNA polymerase III but appears conserved in the exterme thermophile Thermus thermophilis.
Probab=94.86 E-value=0.31 Score=49.45 Aligned_cols=40 Identities=25% Similarity=0.307 Sum_probs=28.3
Q ss_pred HHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...+.+..++.+++ ++..++.+|.|+|||..+..++..+.
T Consensus 21 ~~~~~l~~~~~~~~~~~~~Ll~G~~G~GKt~~a~~la~~l~ 61 (355)
T TIGR02397 21 HIVQTLKNAIKNGRIAHAYLFSGPRGTGKTSIARIFAKALN 61 (355)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhc
Confidence 34445555565553 34568899999999999988887764
No 340
>PRK09354 recA recombinase A; Provisional
Probab=94.84 E-value=0.18 Score=50.68 Aligned_cols=53 Identities=19% Similarity=0.211 Sum_probs=38.6
Q ss_pred HHHHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHH
Q 010367 30 QEKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVD 82 (512)
Q Consensus 30 Q~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~ 82 (512)
=..+|+.++. ++ +.+-..|.+|+|+|||..++.++.. .++++++|-.--.+-.
T Consensus 44 Gi~~LD~~LG~GGip~G~IteI~G~~GsGKTtLal~~~~~~~~~G~~~~yId~E~s~~~ 102 (349)
T PRK09354 44 GSLALDIALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKAGGTAAFIDAEHALDP 102 (349)
T ss_pred CcHHHHHHhcCCCCcCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchHH
Confidence 3456778887 54 2345668899999999998877743 4678888887666544
No 341
>TIGR01425 SRP54_euk signal recognition particle protein SRP54. This model represents examples from the eukaryotic cytosol of the signal recognition particle protein component, SRP54. This GTP-binding protein is a component of the eukaryotic signal recognition particle, along with several other protein subunits and a 7S RNA. Some species, including Arabidopsis, have several closely related forms. The extreme C-terminal region is glycine-rich and lower in complexity, poorly conserved between species, and excluded from this model.
Probab=94.77 E-value=0.48 Score=49.06 Aligned_cols=116 Identities=11% Similarity=0.061 Sum_probs=60.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc--ChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT--NAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P--~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~ 119 (512)
-..+++++|+|||.++..++..+ ++++++++. .+..+..|.+.+..-.+++ +.......
T Consensus 102 vi~lvG~~GvGKTTtaaKLA~~l~~~G~kV~lV~~D~~R~aA~eQLk~~a~~~~vp---~~~~~~~~------------- 165 (429)
T TIGR01425 102 VIMFVGLQGSGKTTTCTKLAYYYQRKGFKPCLVCADTFRAGAFDQLKQNATKARIP---FYGSYTES------------- 165 (429)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcCcccchhHHHHHHHHhhccCCe---EEeecCCC-------------
Confidence 45788999999999987776544 457776663 3333444444444432322 11111100
Q ss_pred chhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HH---HHHHHhccc-ceEEEEcccCCCCc
Q 010367 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MF---RKVISLTKS-HCKLGLTATLVRED 185 (512)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~---~~~l~~~~~-~~~l~LTATp~~~~ 185 (512)
.+..+. ...+..+....+++||+|=+-+.... .. ..+.....+ ...|.++||..++.
T Consensus 166 dp~~i~---------~~~l~~~~~~~~DvViIDTaGr~~~d~~lm~El~~i~~~~~p~e~lLVlda~~Gq~a 228 (429)
T TIGR01425 166 DPVKIA---------SEGVEKFKKENFDIIIVDTSGRHKQEDSLFEEMLQVAEAIQPDNIIFVMDGSIGQAA 228 (429)
T ss_pred CHHHHH---------HHHHHHHHhCCCCEEEEECCCCCcchHHHHHHHHHHhhhcCCcEEEEEeccccChhH
Confidence 010111 11233343457889999998776643 22 222222322 35677788876544
No 342
>COG1435 Tdk Thymidine kinase [Nucleotide transport and metabolism]
Probab=94.76 E-value=0.28 Score=44.58 Aligned_cols=35 Identities=20% Similarity=0.057 Sum_probs=26.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (512)
--++++||.||||..-+-.+.+ .+.++++..|...
T Consensus 6 l~~i~gpM~SGKT~eLl~r~~~~~~~g~~v~vfkp~iD 43 (201)
T COG1435 6 LEFIYGPMFSGKTEELLRRARRYKEAGMKVLVFKPAID 43 (201)
T ss_pred EEEEEccCcCcchHHHHHHHHHHHHcCCeEEEEecccc
Confidence 3478999999999877766644 3678999988554
No 343
>TIGR01242 26Sp45 26S proteasome subunit P45 family. Many proteins may score above the trusted cutoff because an internal
Probab=94.76 E-value=0.083 Score=54.00 Aligned_cols=33 Identities=18% Similarity=0.340 Sum_probs=27.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
+++.++++|+|+|||.++-+++..+..+++-+.
T Consensus 156 p~gvLL~GppGtGKT~lakaia~~l~~~~~~v~ 188 (364)
T TIGR01242 156 PKGVLLYGPPGTGKTLLAKAVAHETNATFIRVV 188 (364)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhCCCCEEecc
Confidence 456899999999999999999988877765554
No 344
>TIGR00678 holB DNA polymerase III, delta' subunit. At position 126-127 of the seed alignment, this family lacks the HM motif of gamma/tau; at 132 it has a near-invariant A vs. an invariant F in gamma/tau.
Probab=94.73 E-value=0.42 Score=43.72 Aligned_cols=35 Identities=29% Similarity=0.458 Sum_probs=26.0
Q ss_pred HHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 34 LSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 34 l~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+...+..++ .+..++.+|.|.|||..+..++..+.
T Consensus 4 l~~~i~~~~~~~~~L~~G~~G~gkt~~a~~~~~~l~ 39 (188)
T TIGR00678 4 LKRALEKGRLAHAYLFAGPEGVGKELLALALAKALL 39 (188)
T ss_pred HHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHHc
Confidence 444554443 35688999999999999988887753
No 345
>PRK12724 flagellar biosynthesis regulator FlhF; Provisional
Probab=94.70 E-value=0.4 Score=49.31 Aligned_cols=109 Identities=18% Similarity=0.140 Sum_probs=57.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEE-cC-hhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA-TN-AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVV 118 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~-P~-~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv 118 (512)
..++++|+|+|||.++..++... +.++.++. .+ +. ...| .+..|....... +.
T Consensus 225 vi~lvGptGvGKTTtaaKLA~~~~~~~G~~V~Lit~Dt~R~-aA~e--QLk~yAe~lgvp-----------------~~- 283 (432)
T PRK12724 225 VVFFVGPTGSGKTTSIAKLAAKYFLHMGKSVSLYTTDNYRI-AAIE--QLKRYADTMGMP-----------------FY- 283 (432)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEecccchhh-hHHH--HHHHHHHhcCCC-----------------ee-
Confidence 46788999999999988877533 34454444 32 22 2223 333332211100 10
Q ss_pred EchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHhc----ccceEEEEcccCCCCc
Q 010367 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLT----KSHCKLGLTATLVRED 185 (512)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~~----~~~~~l~LTATp~~~~ 185 (512)
....+ ....+.+....+++||||=+-+.... .+.+++... +....|.|+||-...+
T Consensus 284 -~~~~~----------~~l~~~l~~~~~D~VLIDTaGr~~rd~~~l~eL~~~~~~~~~~~~~e~~LVLsAt~~~~~ 348 (432)
T PRK12724 284 -PVKDI----------KKFKETLARDGSELILIDTAGYSHRNLEQLERMQSFYSCFGEKDSVENLLVLSSTSSYHH 348 (432)
T ss_pred -ehHHH----------HHHHHHHHhCCCCEEEEeCCCCCccCHHHHHHHHHHHHhhcCCCCCeEEEEEeCCCCHHH
Confidence 01101 12233443467899999987765422 333444332 2246788999987543
No 346
>TIGR03499 FlhF flagellar biosynthetic protein FlhF.
Probab=94.68 E-value=0.14 Score=50.22 Aligned_cols=32 Identities=25% Similarity=0.256 Sum_probs=23.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc----C-CCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI----K-KSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~----~-~~~Lvl~ 75 (512)
+..++++|+|+|||.++..++..+ + .++.+|.
T Consensus 195 ~vi~~vGptGvGKTTt~~kLa~~~~~~~g~~~V~li~ 231 (282)
T TIGR03499 195 GVIALVGPTGVGKTTTLAKLAARFVLEHGNKKVALIT 231 (282)
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHHcCCCeEEEEE
Confidence 367788999999999987776543 2 4566555
No 347
>cd01123 Rad51_DMC1_radA Rad51_DMC1_radA,B. This group of recombinases includes the eukaryotic proteins RAD51, RAD55/57 and the meiosis-specific protein DMC1, and the archaeal proteins radA and radB. They are closely related to the bacterial RecA group. Rad51 proteins catalyze a similiar recombination reaction as RecA, using ATP-dependent DNA binding activity and a DNA-dependent ATPase. However, this reaction is less efficient and requires accessory proteins such as RAD55/57 .
Probab=94.67 E-value=0.2 Score=47.64 Aligned_cols=47 Identities=21% Similarity=0.350 Sum_probs=33.3
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcCh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (512)
.+++.++.++ ...-..|.+|.|+|||..+..++... ..+++++....
T Consensus 6 ~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~l~~~~~~~~~~~g~~~~viyi~~e~ 63 (235)
T cd01123 6 KALDELLGGGIETGSITEIFGEFGSGKTQLCHQLAVTVQLPIELGGLEGKAVYIDTEG 63 (235)
T ss_pred hhhHhhccCCCCCCeEEEEECCCCCCHHHHHHHHHHHeeCccccCCCCccEEEEeCCC
Confidence 3566777654 22456788999999999998887542 25788888544
No 348
>TIGR03878 thermo_KaiC_2 KaiC domain protein, AF_0795 family. This KaiC domain-containing protein family occurs sporadically across a broad taxonomic range (Euryarchaeota, Aquificae, Dictyoglomi, Epsilonproteobacteria, and Firmicutes), but exclusively in thermophiles.
Probab=94.67 E-value=0.26 Score=47.78 Aligned_cols=34 Identities=21% Similarity=0.069 Sum_probs=26.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN 77 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~ 77 (512)
.-.+|.+|+|+|||..++.++.. .+.++++++--
T Consensus 37 s~~lI~G~pGtGKT~l~~qf~~~~a~~Ge~vlyis~E 73 (259)
T TIGR03878 37 SVINITGVSDTGKSLMVEQFAVTQASRGNPVLFVTVE 73 (259)
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEec
Confidence 45678899999999998877653 35689999843
No 349
>COG1474 CDC6 Cdc6-related protein, AAA superfamily ATPase [DNA replication, recombination, and repair / Posttranslational modification, protein turnover, chaperones]
Probab=94.64 E-value=0.2 Score=51.05 Aligned_cols=48 Identities=19% Similarity=0.188 Sum_probs=38.4
Q ss_pred CCCCCCcHHHHHHHHHH----HhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 21 KPHAQPRPYQEKSLSKM----FGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~----~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+....-|+-|.+.+... +.++.+.+.++.++||+|||.++-.++.++.
T Consensus 16 P~~l~~Re~ei~~l~~~l~~~~~~~~p~n~~iyG~~GTGKT~~~~~v~~~l~ 67 (366)
T COG1474 16 PEELPHREEEINQLASFLAPALRGERPSNIIIYGPTGTGKTATVKFVMEELE 67 (366)
T ss_pred cccccccHHHHHHHHHHHHHHhcCCCCccEEEECCCCCCHhHHHHHHHHHHH
Confidence 33477788898888765 4556667899999999999999988887764
No 350
>PF05127 Helicase_RecD: Helicase; InterPro: IPR007807 This domain is about 350 amino acid residues long and appears to have a P-loop motif, suggesting this is an ATPase. This domain is often N-terminal to a GCN5-related N-acetyltransferase domain IPR000182 from INTERPRO and C-terminal to IPR013562 from INTERPRO.; PDB: 2ZPA_B.
Probab=94.63 E-value=0.036 Score=50.01 Aligned_cols=117 Identities=13% Similarity=0.089 Sum_probs=53.5
Q ss_pred EEEcCCCCcHHHHHHHHHHhc-C---CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE---EcCCcccc-ccCCCeEEE
Q 010367 47 IIVLPCGAGKSLVGVSAACRI-K---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR---FTSDSKER-FRGNAGVVV 118 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~-~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~---~~~~~~~~-~~~~~~Ivv 118 (512)
+|.++-|-|||-+.-.++..+ . .+++|.+|+..-+....+-+..- +....... ........ ......|..
T Consensus 1 VltA~RGRGKSa~lGl~~a~l~~~~~~~I~vtAP~~~~~~~lf~~~~~~--l~~~~~~~~~~~~~~~~~~~~~~~~~i~f 78 (177)
T PF05127_consen 1 VLTADRGRGKSAALGLAAAALIQKGKIRILVTAPSPENVQTLFEFAEKG--LKALGYKEEKKKRIGQIIKLRFNKQRIEF 78 (177)
T ss_dssp -EEE-TTSSHHHHHHHCCCCSSS-----EEEE-SS--S-HHHHHCC----------------------------CCC--B
T ss_pred CccCCCCCCHHHHHHHHHHHHHHhcCceEEEecCCHHHHHHHHHHHHhh--ccccccccccccccccccccccccceEEE
Confidence 578899999997754444333 2 37999999998665443333221 11000000 00000000 011234555
Q ss_pred EchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcccCCC
Q 010367 119 TTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (512)
Q Consensus 119 ~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~ 183 (512)
..++.+... ....+++|||||=.++.+...+++. ...++.||-|-.-
T Consensus 79 ~~Pd~l~~~---------------~~~~DlliVDEAAaIp~p~L~~ll~---~~~~vv~stTi~G 125 (177)
T PF05127_consen 79 VAPDELLAE---------------KPQADLLIVDEAAAIPLPLLKQLLR---RFPRVVFSTTIHG 125 (177)
T ss_dssp --HHHHCCT-------------------SCEEECTGGGS-HHHHHHHHC---CSSEEEEEEEBSS
T ss_pred ECCHHHHhC---------------cCCCCEEEEechhcCCHHHHHHHHh---hCCEEEEEeeccc
Confidence 555544322 1246899999999999998887754 3457788888764
No 351
>PTZ00112 origin recognition complex 1 protein; Provisional
Probab=94.62 E-value=0.47 Score=52.87 Aligned_cols=45 Identities=16% Similarity=0.027 Sum_probs=31.7
Q ss_pred CCCCcHHHHHHHHHHHh----CCCCcce-EEEcCCCCcHHHHHHHHHHhc
Q 010367 23 HAQPRPYQEKSLSKMFG----NGRARSG-IIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~----~~~~~~~-il~~~tG~GKTl~~i~~i~~~ 67 (512)
...=|+-|.+.|...+. +....++ .|.++||+|||.++-.++..+
T Consensus 756 ~LPhREeEIeeLasfL~paIkgsgpnnvLYIyG~PGTGKTATVK~VLrEL 805 (1164)
T PTZ00112 756 YLPCREKEIKEVHGFLESGIKQSGSNQILYISGMPGTGKTATVYSVIQLL 805 (1164)
T ss_pred cCCChHHHHHHHHHHHHHHHhcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 45568888888876543 2222344 489999999999988777554
No 352
>TIGR01241 FtsH_fam ATP-dependent metalloprotease FtsH. HflB(FtsH) is a pleiotropic protein required for correct cell division in bacteria. It has ATP-dependent zinc metalloprotease activity. It was formerly designated cell division protein FtsH.
Probab=94.62 E-value=0.15 Score=54.37 Aligned_cols=34 Identities=21% Similarity=0.334 Sum_probs=28.1
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
..++.++.+|+|+|||..+-+++...+.+++.+.
T Consensus 87 ~~~giLL~GppGtGKT~la~alA~~~~~~~~~i~ 120 (495)
T TIGR01241 87 IPKGVLLVGPPGTGKTLLAKAVAGEAGVPFFSIS 120 (495)
T ss_pred CCCcEEEECCCCCCHHHHHHHHHHHcCCCeeecc
Confidence 3467899999999999999999888877766554
No 353
>PRK08903 DnaA regulatory inactivator Hda; Validated
Probab=94.60 E-value=0.37 Score=45.54 Aligned_cols=47 Identities=13% Similarity=0.029 Sum_probs=30.2
Q ss_pred HHHHHHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 29 YQEKSLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 29 yQ~~al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.....+..+... ...+..++.+|+|+|||..+..++... +.+++++.
T Consensus 27 ~~~~~l~~~~~~~~~~~~~~l~G~~G~GKT~La~ai~~~~~~~~~~~~~i~ 77 (227)
T PRK08903 27 ELVARLRELAAGPVADRFFYLWGEAGSGRSHLLQALVADASYGGRNARYLD 77 (227)
T ss_pred HHHHHHHHHHhccCCCCeEEEECCCCCCHHHHHHHHHHHHHhCCCcEEEEe
Confidence 345555555442 223578999999999998887776543 33454444
No 354
>COG1444 Predicted P-loop ATPase fused to an acetyltransferase [General function prediction only]
Probab=94.60 E-value=0.48 Score=52.02 Aligned_cols=134 Identities=17% Similarity=0.209 Sum_probs=77.6
Q ss_pred cHHHHHHHH---HHHhCCCCcceEEEcCCCCcHHHHH---HHHHHhcCC--CEEEEEcChhhHHHHHHHHHH----hhCC
Q 010367 27 RPYQEKSLS---KMFGNGRARSGIIVLPCGAGKSLVG---VSAACRIKK--SCLCLATNAVSVDQWAFQFKL----WSTI 94 (512)
Q Consensus 27 r~yQ~~al~---~~~~~~~~~~~il~~~tG~GKTl~~---i~~i~~~~~--~~Lvl~P~~~L~~Qw~~~~~~----~~~~ 94 (512)
..-|.+++. .++..+ .+..+|.+.=|=|||-+. +.++.+... +++|.+|+.+-++ ..-+|.. ++|.
T Consensus 213 T~dQ~~~l~~~~~l~~~~-~~~~vlTAdRGRGKSA~lGi~~~~~~~~~~~~~iiVTAP~~~nv~-~Lf~fa~~~l~~lg~ 290 (758)
T COG1444 213 TEDQAEALEILERLLDAP-KRALVLTADRGRGKSAALGIALAAAARLAGSVRIIVTAPTPANVQ-TLFEFAGKGLEFLGY 290 (758)
T ss_pred ChhHHHHHHHHHHHHcCC-CceEEEEcCCCCcHhHHHhHHHHHHHHhcCCceEEEeCCCHHHHH-HHHHHHHHhHHHhCC
Confidence 345666555 445443 347788899999999873 244445554 8999999998444 4444432 2233
Q ss_pred CCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceE
Q 010367 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK 174 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~ 174 (512)
....+....+...........|-..+|.... ..-+++|||||=.++-+-..+++..+ .+
T Consensus 291 ~~~v~~d~~g~~~~~~~~~~~i~y~~P~~a~------------------~~~DllvVDEAAaIplplL~~l~~~~---~r 349 (758)
T COG1444 291 KRKVAPDALGEIREVSGDGFRIEYVPPDDAQ------------------EEADLLVVDEAAAIPLPLLHKLLRRF---PR 349 (758)
T ss_pred ccccccccccceeeecCCceeEEeeCcchhc------------------ccCCEEEEehhhcCChHHHHHHHhhc---Cc
Confidence 2111111111111111122334455554321 12689999999999988777776643 47
Q ss_pred EEEcccCCC
Q 010367 175 LGLTATLVR 183 (512)
Q Consensus 175 l~LTATp~~ 183 (512)
+.||-|..-
T Consensus 350 v~~sTTIhG 358 (758)
T COG1444 350 VLFSTTIHG 358 (758)
T ss_pred eEEEeeecc
Confidence 888888653
No 355
>cd01393 recA_like RecA is a bacterial enzyme which has roles in homologous recombination, DNA repair, and the induction of the SOS response. RecA couples ATP hydrolysis to DNA strand exchange. While prokaryotes have a single RecA protein, eukaryotes have multiple RecA homologs such as Rad51, DMC1 and Rad55/57. Archaea have the RecA-like homologs radA and radB.
Probab=94.59 E-value=0.21 Score=47.18 Aligned_cols=49 Identities=22% Similarity=0.335 Sum_probs=34.6
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---C------CCEEEEEcChhh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---K------KSCLCLATNAVS 80 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~------~~~Lvl~P~~~L 80 (512)
+.++.++.++ ...-..|.+|+|+|||..++.++... + .+++++......
T Consensus 6 ~~lD~~l~GG~~~g~v~~I~G~~GsGKT~l~~~ia~~~~~~~~~~g~~~~v~yi~~e~~~ 65 (226)
T cd01393 6 KALDELLGGGIPTGRITEIFGEFGSGKTQLCLQLAVEAQLPGELGGLEGKVVYIDTEGAF 65 (226)
T ss_pred HHHHHHhCCCCcCCcEEEEeCCCCCChhHHHHHHHHHhhcccccCCCcceEEEEecCCCC
Confidence 3566777654 23466888999999999988877543 3 578888875543
No 356
>PRK14971 DNA polymerase III subunits gamma and tau; Provisional
Probab=94.59 E-value=0.43 Score=52.14 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=28.7
Q ss_pred HHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...+.+..++.+++ ++..+++||.|.|||.++..++..+.
T Consensus 24 ~~~~~L~~~i~~~~l~hayLf~Gp~G~GKtt~A~~lAk~l~ 64 (614)
T PRK14971 24 ALTTTLKNAIATNKLAHAYLFCGPRGVGKTTCARIFAKTIN 64 (614)
T ss_pred HHHHHHHHHHHcCCCCeeEEEECCCCCCHHHHHHHHHHHhC
Confidence 33444555666654 34578999999999998888887664
No 357
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=94.57 E-value=0.16 Score=57.81 Aligned_cols=38 Identities=16% Similarity=0.296 Sum_probs=27.6
Q ss_pred HHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 30 Q~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|.+-+..+. ......+.++++|+|.|||.++-.++..+
T Consensus 178 r~~ei~~~~~~l~r~~~~n~lL~G~pGvGKT~l~~~la~~i 218 (852)
T TIGR03346 178 RDEEIRRTIQVLSRRTKNNPVLIGEPGVGKTAIVEGLAQRI 218 (852)
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 444455543 45555689999999999999987777654
No 358
>PRK10865 protein disaggregation chaperone; Provisional
Probab=94.52 E-value=0.15 Score=58.03 Aligned_cols=38 Identities=16% Similarity=0.284 Sum_probs=28.3
Q ss_pred HHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 30 QEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 30 Q~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|..-++.++ ......+.++++|+|+|||.++-.++..+
T Consensus 183 r~~ei~~~i~iL~r~~~~n~lL~G~pGvGKT~l~~~la~~i 223 (857)
T PRK10865 183 RDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 223 (857)
T ss_pred CHHHHHHHHHHHhcCCcCceEEECCCCCCHHHHHHHHHHHh
Confidence 444455554 35445689999999999999988887665
No 359
>PRK07471 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=0.26 Score=50.23 Aligned_cols=38 Identities=21% Similarity=0.291 Sum_probs=28.0
Q ss_pred HHHHHH---HHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 30 QEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 30 Q~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|.++.. .++..++ ++..++.+|.|.||+..+..++..+
T Consensus 24 q~~~~~~L~~~~~~~rl~HA~Lf~Gp~G~GK~~lA~~~A~~L 65 (365)
T PRK07471 24 HAAAEAALLDAYRSGRLHHAWLIGGPQGIGKATLAYRMARFL 65 (365)
T ss_pred hHHHHHHHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 555544 4455554 3457899999999999999888765
No 360
>PRK07993 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=0.27 Score=49.47 Aligned_cols=43 Identities=14% Similarity=0.183 Sum_probs=33.2
Q ss_pred CCcHHHHHHHHHHH---hCCC-CcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 25 QPRPYQEKSLSKMF---GNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~---~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.++|||....+.+. ..++ ++..++.+|.|.||+..+..++..+
T Consensus 2 ~~yPWl~~~~~~l~~~~~~~rl~HA~Lf~G~~G~Gk~~lA~~~A~~L 48 (334)
T PRK07993 2 KWYPWLRPDYEQLVGSYQAGRGHHALLIQALPGMGDDALIYALSRWL 48 (334)
T ss_pred CCCCCChHHHHHHHHHHHcCCcceEEeeECCCCCCHHHHHHHHHHHH
Confidence 56789888888764 3443 4566789999999999999888665
No 361
>PRK08699 DNA polymerase III subunit delta'; Validated
Probab=94.51 E-value=0.4 Score=48.03 Aligned_cols=42 Identities=17% Similarity=0.213 Sum_probs=33.1
Q ss_pred CcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 26 PRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
++|+|......+... .-++..++.+|.|.|||..+..++..+
T Consensus 2 ~yPW~~~~w~~l~~~~~r~~hA~Lf~G~~G~GK~~la~~~a~~l 45 (325)
T PRK08699 2 IYPWHQEQWRQIAEHWERRPNAWLFAGKKGIGKTAFARFAAQAL 45 (325)
T ss_pred CCCccHHHHHHHHHhcCCcceEEEeECCCCCCHHHHHHHHHHHH
Confidence 578999988887643 223567899999999999998888664
No 362
>TIGR02238 recomb_DMC1 meiotic recombinase Dmc1. This model describes DMC1, a subfamily of a larger family of DNA repair and recombination proteins. It is eukaryotic only and most closely related to eukaryotic RAD51. It also resembles archaeal RadA (TIGR02236) and RadB (TIGR02237) and bacterial RecA (TIGR02012). It has been characterized for human as a recombinase active only in meiosis.
Probab=94.48 E-value=0.23 Score=49.52 Aligned_cols=49 Identities=12% Similarity=0.163 Sum_probs=33.9
Q ss_pred HHHHHHHhCCC--CcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhh
Q 010367 32 KSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVS 80 (512)
Q Consensus 32 ~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L 80 (512)
+.++.++++|- ..-..|++|+|+|||..++.++... +.++++|...-..
T Consensus 83 ~~LD~lLgGGi~~G~iteI~G~~GsGKTql~lqla~~~~~~~~~gg~~~~vvYIdtE~~f 142 (313)
T TIGR02238 83 QALDGILGGGIESMSITEVFGEFRCGKTQLSHTLCVTAQLPREMGGGNGKVAYIDTEGTF 142 (313)
T ss_pred HHHHHHhCCCCcCCeEEEEECCCCCCcCHHHHHHHHHHhcchhhcCCCCeEEEEEcCCCC
Confidence 35666777652 2345688999999999987766321 3589999866543
No 363
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=94.47 E-value=0.13 Score=58.21 Aligned_cols=91 Identities=15% Similarity=0.254 Sum_probs=50.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEEcChhhHHHHH--HHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWA--FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~--~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
..++++|||+|||.++-+++..+. ...++... +..+. ....++.|.++.-++
T Consensus 598 ~~lf~Gp~GvGKT~lA~~La~~l~~~~~~~~~~d----mse~~~~~~~~~l~g~~~gyvg-------------------- 653 (852)
T TIGR03345 598 VFLLVGPSGVGKTETALALAELLYGGEQNLITIN----MSEFQEAHTVSRLKGSPPGYVG-------------------- 653 (852)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhCCCcceEEEe----HHHhhhhhhhccccCCCCCccc--------------------
Confidence 368999999999999988887763 23444443 22221 112222222222111
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~ 169 (512)
|+. ...+.+.+....+++|++||++.+....+..++..+
T Consensus 654 ~~~----------~g~L~~~v~~~p~svvllDEieka~~~v~~~Llq~l 692 (852)
T TIGR03345 654 YGE----------GGVLTEAVRRKPYSVVLLDEVEKAHPDVLELFYQVF 692 (852)
T ss_pred ccc----------cchHHHHHHhCCCcEEEEechhhcCHHHHHHHHHHh
Confidence 000 001223444578899999999987766555554444
No 364
>COG1219 ClpX ATP-dependent protease Clp, ATPase subunit [Posttranslational modification, protein turnover, chaperones]
Probab=94.45 E-value=0.043 Score=53.39 Aligned_cols=32 Identities=19% Similarity=0.279 Sum_probs=27.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.+.++.+|||+|||+.|-+++..+.-|+.+-=
T Consensus 98 SNILLiGPTGsGKTlLAqTLAk~LnVPFaiAD 129 (408)
T COG1219 98 SNILLIGPTGSGKTLLAQTLAKILNVPFAIAD 129 (408)
T ss_pred ccEEEECCCCCcHHHHHHHHHHHhCCCeeecc
Confidence 36899999999999999999999988876543
No 365
>TIGR03689 pup_AAA proteasome ATPase. In the Actinobacteria, as shown for Mycobacterium tuberculosis, some proteins are modified by ligation between an epsilon-amino group of a lysine side chain and the C-terminal carboxylate of the ubiquitin-like protein Pup. This modification leads to protein degradation by the archaeal-like proteasome found in the Actinobacteria. Members of this protein family belong to the AAA family of ATPases and tend to be clustered with the genes for Pup, the Pup ligase PafA, and structural components of the proteasome. This protein forms hexameric rings with ATPase activity.
Probab=94.43 E-value=0.11 Score=54.96 Aligned_cols=29 Identities=21% Similarity=0.385 Sum_probs=24.0
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
.+++.+|.+|+|+|||.++-+++..+..+
T Consensus 215 ~p~GILLyGPPGTGKT~LAKAlA~eL~~~ 243 (512)
T TIGR03689 215 PPKGVLLYGPPGCGKTLIAKAVANSLAQR 243 (512)
T ss_pred CCcceEEECCCCCcHHHHHHHHHHhhccc
Confidence 34688999999999999998888777544
No 366
>PF06745 KaiC: KaiC; InterPro: IPR014774 This entry represents a domain within bacterial and archaeal proteins, most of which are hypothetical. More than one copy is sometimes found in each protein in this entry. These include KaiC, which is one of the Kai proteins among which direct protein-protein association may be a critical process in the generation of circadian rhythms in cyanobacteria []. The circadian clock protein KaiC, is encoded in the kaiABC operon that controls circadian rhythms and may be universal in Cyanobacteria. Each member contains two copies of this domain, which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor. RadA/Sms is a highly conserved eubacterial protein that shares sequence similarity with both RecA strand transferase and lon protease. The RadA/Sms family are probable ATP-dependent proteases involved in both DNA repair and degradation of proteins, peptides, glycopeptides. They are classified in as non-peptidase homologues and unassigned peptidases in MEROPS peptidase family S16 (lon protease family, clan SJ). RadA/Sms is involved in recombination and recombinational repair, most likely involving the stabilisation or processing of branched DNA molecules or blocked replication forks because of its genetic redundancy with RecG and RuvABC [].; PDB: 2W0M_A 2ZTS_C 4DUG_B 3K0E_B 3K09_B 3S1A_E 3JZM_E 2GBL_B 3DVL_A 1TF7_C ....
Probab=94.43 E-value=0.082 Score=50.03 Aligned_cols=58 Identities=17% Similarity=0.302 Sum_probs=40.7
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---c-CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~-~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.++.++.+| +....+|.+|+|+|||..++.++.. . +.++++++-... .+++.+.+..+
T Consensus 7 ~LD~~l~GGip~gs~~li~G~~GsGKT~l~~q~l~~~~~~~ge~vlyvs~ee~-~~~l~~~~~s~ 70 (226)
T PF06745_consen 7 GLDELLGGGIPKGSVVLISGPPGSGKTTLALQFLYNGLKNFGEKVLYVSFEEP-PEELIENMKSF 70 (226)
T ss_dssp THHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHHHHHHT--EEEEESSS--HHHHHHHHHTT
T ss_pred hHHHhhcCCCCCCcEEEEEeCCCCCcHHHHHHHHHHhhhhcCCcEEEEEecCC-HHHHHHHHHHc
Confidence 456677554 3346788899999999998876643 3 789999996554 77788887765
No 367
>KOG2340 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.42 E-value=0.99 Score=46.98 Aligned_cols=93 Identities=9% Similarity=0.125 Sum_probs=63.1
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhCCC-----ceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc--ccccCccccEEEE
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLRKP-----MIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD--NSIDIPEANVIIQ 338 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~~~-----~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~--~GlDlp~~~~vI~ 338 (512)
..-..+||+.++-..--.+-.+++.. .++.-+++..-.+.-+-|..+ ..+|++-|.-+- +-.++.++..||+
T Consensus 550 ~t~s~~LiyIPSYfDFVRvRNy~K~e~i~F~~i~EYssk~~vsRAR~lF~qg-r~~vlLyTER~hffrR~~ikGVk~vVf 628 (698)
T KOG2340|consen 550 RTESGILIYIPSYFDFVRVRNYMKKEEISFVMINEYSSKSKVSRARELFFQG-RKSVLLYTERAHFFRRYHIKGVKNVVF 628 (698)
T ss_pred cccCceEEEecchhhHHHHHHHhhhhhcchHHHhhhhhHhhhhHHHHHHHhc-CceEEEEehhhhhhhhheecceeeEEE
Confidence 33456899988877766666666432 244444555555566678887 888988884433 6788999999999
Q ss_pred ecCCCCCHHHH---HHHhhcccccC
Q 010367 339 ISSHAGSRRQE---AQRLGRILRAK 360 (512)
Q Consensus 339 ~~~~~~s~~~~---~Q~~GR~~R~g 360 (512)
|.+|. +|.-| +-+.+|+.-.|
T Consensus 629 YqpP~-~P~FYsEiinm~~k~~~~g 652 (698)
T KOG2340|consen 629 YQPPN-NPHFYSEIINMSDKTTSQG 652 (698)
T ss_pred ecCCC-CcHHHHHHHhhhhhhhccC
Confidence 97775 88766 44556654433
No 368
>COG2812 DnaX DNA polymerase III, gamma/tau subunits [DNA replication, recombination, and repair]
Probab=94.39 E-value=0.1 Score=54.93 Aligned_cols=113 Identities=20% Similarity=0.307 Sum_probs=61.7
Q ss_pred HHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHH--HHHHHHhhCCCCCcEEEEcCCcc
Q 010367 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW--AFQFKLWSTIQDDQICRFTSDSK 107 (512)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw--~~~~~~~~~~~~~~v~~~~~~~~ 107 (512)
.++|...+.+++ ++..++++|-|.|||.++=.++..++...- |+.+=+.+- .+++.. | ...+|..+.+.+.
T Consensus 25 ~~~L~nal~~~ri~hAYlfsG~RGvGKTt~Ari~AkalNC~~~---~~~ePC~~C~~Ck~I~~--g-~~~DviEiDaASn 98 (515)
T COG2812 25 VKTLSNALENGRIAHAYLFSGPRGVGKTTIARILAKALNCENG---PTAEPCGKCISCKEINE--G-SLIDVIEIDAASN 98 (515)
T ss_pred HHHHHHHHHhCcchhhhhhcCCCCcCchhHHHHHHHHhcCCCC---CCCCcchhhhhhHhhhc--C-Ccccchhhhhhhc
Confidence 344555555553 456788999999999998777776653221 222212211 112222 1 1112222222211
Q ss_pred ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHh----cCCccEEEEcCCCCCCchHHHHHHHhcc
Q 010367 108 ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR----NREWGLLLMDEVHVVPAHMFRKVISLTK 170 (512)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~----~~~~~lvIiDEaH~~~~~~~~~~l~~~~ 170 (512)
.. | .+.+.+.+... ..++.+.||||+|++....|...++.+.
T Consensus 99 ~g--------V-------------ddiR~i~e~v~y~P~~~ryKVyiIDEvHMLS~~afNALLKTLE 144 (515)
T COG2812 99 TG--------V-------------DDIREIIEKVNYAPSEGRYKVYIIDEVHMLSKQAFNALLKTLE 144 (515)
T ss_pred cC--------h-------------HHHHHHHHHhccCCccccceEEEEecHHhhhHHHHHHHhcccc
Confidence 10 0 11223333322 2467899999999999999998888774
No 369
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=94.36 E-value=0.11 Score=58.25 Aligned_cols=34 Identities=18% Similarity=0.322 Sum_probs=29.1
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.++.++.+|+|+|||.++-+++...+.+++.+-+
T Consensus 487 ~~giLL~GppGtGKT~lakalA~e~~~~fi~v~~ 520 (733)
T TIGR01243 487 PKGVLLFGPPGTGKTLLAKAVATESGANFIAVRG 520 (733)
T ss_pred CceEEEECCCCCCHHHHHHHHHHhcCCCEEEEeh
Confidence 4567899999999999999999988888777665
No 370
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=94.35 E-value=0.19 Score=53.19 Aligned_cols=36 Identities=19% Similarity=0.277 Sum_probs=30.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
..++.++.+|+|+|||..|=+++.+++-|++=|.-+
T Consensus 222 PprGvLlHGPPGCGKT~lA~AiAgel~vPf~~isAp 257 (802)
T KOG0733|consen 222 PPRGVLLHGPPGCGKTSLANAIAGELGVPFLSISAP 257 (802)
T ss_pred CCCceeeeCCCCccHHHHHHHHhhhcCCceEeecch
Confidence 457889999999999999999999999888776543
No 371
>TIGR02639 ClpA ATP-dependent Clp protease ATP-binding subunit clpA.
Probab=94.30 E-value=0.14 Score=57.28 Aligned_cols=92 Identities=13% Similarity=0.189 Sum_probs=52.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMV 124 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l 124 (512)
..++++|||+|||.++-.++..+..+++.+- -....+ .....++.+-++..++ |+.
T Consensus 486 ~~lf~Gp~GvGKT~lA~~la~~l~~~~~~~d-~se~~~--~~~~~~lig~~~gyvg--------------------~~~- 541 (731)
T TIGR02639 486 SFLFTGPTGVGKTELAKQLAEALGVHLERFD-MSEYME--KHTVSRLIGAPPGYVG--------------------FEQ- 541 (731)
T ss_pred eEEEECCCCccHHHHHHHHHHHhcCCeEEEe-Cchhhh--cccHHHHhcCCCCCcc--------------------cch-
Confidence 4689999999999999999888876654443 121111 0112222222211110 000
Q ss_pred hccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc
Q 010367 125 AFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (512)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~ 169 (512)
...+...+....+++|++||+|.+....+..++..+
T Consensus 542 ---------~~~l~~~~~~~p~~VvllDEieka~~~~~~~Ll~~l 577 (731)
T TIGR02639 542 ---------GGLLTEAVRKHPHCVLLLDEIEKAHPDIYNILLQVM 577 (731)
T ss_pred ---------hhHHHHHHHhCCCeEEEEechhhcCHHHHHHHHHhh
Confidence 112233444467899999999998877666555554
No 372
>CHL00176 ftsH cell division protein; Validated
Probab=94.25 E-value=0.25 Score=54.10 Aligned_cols=33 Identities=21% Similarity=0.382 Sum_probs=27.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.++.++.+|+|+|||+.+-+++...+.+++.+.
T Consensus 216 p~gVLL~GPpGTGKT~LAralA~e~~~p~i~is 248 (638)
T CHL00176 216 PKGVLLVGPPGTGKTLLAKAIAGEAEVPFFSIS 248 (638)
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCeeecc
Confidence 457899999999999999999888887776654
No 373
>PRK11034 clpA ATP-dependent Clp protease ATP-binding subunit; Provisional
Probab=94.20 E-value=0.29 Score=54.62 Aligned_cols=29 Identities=24% Similarity=0.360 Sum_probs=22.0
Q ss_pred HhCCCCcceEEEcCCCCcHHHHHHHHHHh
Q 010367 38 FGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 38 ~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
+......+.+|.+|+|+|||.++-.++..
T Consensus 202 L~r~~~~n~LLvGppGvGKT~lae~la~~ 230 (758)
T PRK11034 202 LCRRRKNNPLLVGESGVGKTAIAEGLAWR 230 (758)
T ss_pred HhccCCCCeEEECCCCCCHHHHHHHHHHH
Confidence 33434468899999999999998776643
No 374
>TIGR00416 sms DNA repair protein RadA. The gene protuct codes for a probable ATP-dependent protease involved in both DNA repair and degradation of proteins, peptides, glycopeptides. Also known as sms. Residues 11-28 of the SEED alignment contain a putative Zn binding domain. Residues 110-117 of the seed contain a putative ATP binding site both documented in Haemophilus and in Listeria monocytogenes. for E.coli see ( J. BACTERIOL. 178:5045-5048(1996)).
Probab=94.04 E-value=0.36 Score=50.75 Aligned_cols=99 Identities=18% Similarity=0.251 Sum_probs=61.6
Q ss_pred HHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010367 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (512)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~ 105 (512)
...++.++.++ ...-.+|.+++|+|||..++.++... +.+++++...- ...|+.....++ +++..++.
T Consensus 80 i~~LD~vLgGGi~~GsvilI~G~pGsGKTTL~lq~a~~~a~~g~kvlYvs~EE-s~~qi~~ra~rl-g~~~~~l~----- 152 (454)
T TIGR00416 80 FGELDRVLGGGIVPGSLILIGGDPGIGKSTLLLQVACQLAKNQMKVLYVSGEE-SLQQIKMRAIRL-GLPEPNLY----- 152 (454)
T ss_pred cHHHHHHhcCCccCCeEEEEEcCCCCCHHHHHHHHHHHHHhcCCcEEEEECcC-CHHHHHHHHHHc-CCChHHeE-----
Confidence 45566777654 22355778999999999988877544 46899988654 467777665554 33222221
Q ss_pred ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
+.... +...+...+...+.+++|||..+.+.
T Consensus 153 ------------~~~e~----------~~~~I~~~i~~~~~~~vVIDSIq~l~ 183 (454)
T TIGR00416 153 ------------VLSET----------NWEQICANIEEENPQACVIDSIQTLY 183 (454)
T ss_pred ------------EcCCC----------CHHHHHHHHHhcCCcEEEEecchhhc
Confidence 11110 02233455555688999999998764
No 375
>PF03354 Terminase_1: Phage Terminase ; InterPro: IPR005021 This entry is represented by Lactococcus phage bIL285, Orf41 (terminase). The characteristics of the protein distribution suggest prophage matches in addition to the phage matches.
Probab=94.03 E-value=0.24 Score=52.63 Aligned_cols=66 Identities=24% Similarity=0.264 Sum_probs=47.5
Q ss_pred HHHHHHHHHHHhC----C--CCcceEEEcCCCCcHHHHHHHHHHh--c-----CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 28 PYQEKSLSKMFGN----G--RARSGIIVLPCGAGKSLVGVSAACR--I-----KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 28 ~yQ~~al~~~~~~----~--~~~~~il~~~tG~GKTl~~i~~i~~--~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
|+|+-.+..+++- + +-+.+++..|=|-|||..+..++.. + +..+++++++..-+....+.+.....
T Consensus 1 PwQ~fi~~~i~G~~~~~g~rrf~~~~l~v~RkNGKS~l~a~i~ly~l~~~g~~~~~i~~~A~~~~QA~~~f~~~~~~i~ 79 (477)
T PF03354_consen 1 PWQKFILRSIFGWRKDDGRRRFREVYLEVPRKNGKSTLAAAIALYMLFLDGEPGAEIYCAANTRDQAKIVFDEAKKMIE 79 (477)
T ss_pred CcHHHHHHHHhceEcCCCCEEEEEEEEEEcCccCccHHHHHHHHHHHhcCCccCceEEEEeCCHHHHHHHHHHHHHHHH
Confidence 7899888888741 1 2356888999999999886555421 1 24689999998877777777766643
No 376
>PF01745 IPT: Isopentenyl transferase; InterPro: IPR002648 Isopentenyl transferase / dimethylallyl transferase synthesizes isopentenyladensosine 5'-monophosphate, a cytokinin that induces shoot formation on host plants infected with the Ti plasmid [].; GO: 0004161 dimethylallyltranstransferase activity, 0009058 biosynthetic process; PDB: 2ZE8_C 2ZE5_A 2ZE7_A 2ZE6_A.
Probab=94.01 E-value=0.057 Score=49.80 Aligned_cols=29 Identities=28% Similarity=0.454 Sum_probs=23.1
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
.+|++|||+|||-.++.++...+.+++++
T Consensus 4 ~~i~GpT~tGKt~~ai~lA~~~g~pvI~~ 32 (233)
T PF01745_consen 4 YLIVGPTGTGKTALAIALAQKTGAPVISL 32 (233)
T ss_dssp EEEE-STTSSHHHHHHHHHHHH--EEEEE
T ss_pred EEEECCCCCChhHHHHHHHHHhCCCEEEe
Confidence 57899999999999999999998777665
No 377
>COG0464 SpoVK ATPases of the AAA+ class [Posttranslational modification, protein turnover, chaperones]
Probab=94.00 E-value=0.13 Score=54.92 Aligned_cols=47 Identities=15% Similarity=0.294 Sum_probs=39.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHH
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
.+..++++|+|+|||+.+-+++...+.+++-+-.. .+...|.-+..+
T Consensus 276 ~~giLl~GpPGtGKT~lAkava~~~~~~fi~v~~~-~l~sk~vGesek 322 (494)
T COG0464 276 PKGVLLYGPPGTGKTLLAKAVALESRSRFISVKGS-ELLSKWVGESEK 322 (494)
T ss_pred CCeeEEECCCCCCHHHHHHHHHhhCCCeEEEeeCH-HHhccccchHHH
Confidence 45788999999999999999999988888887776 788888777666
No 378
>PLN03187 meiotic recombination protein DMC1 homolog; Provisional
Probab=93.97 E-value=0.36 Score=48.65 Aligned_cols=48 Identities=13% Similarity=0.185 Sum_probs=33.0
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAV 79 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~ 79 (512)
+.++.++++| ...-..|++|.|+|||..++.++... ..++++|.....
T Consensus 113 ~~LD~lLgGGi~~G~ItEI~G~~GsGKTql~lqlav~~qlp~~~gg~~~~vvyIdTE~t 171 (344)
T PLN03187 113 QALDELLGGGIETRCITEAFGEFRSGKTQLAHTLCVTTQLPTEMGGGNGKVAYIDTEGT 171 (344)
T ss_pred HhHHhhcCCCCCCCeEEEEecCCCCChhHHHHHHHHHHhcchhhCCCCceEEEEEcCCC
Confidence 3466667654 22345688999999999987776422 258999987553
No 379
>PF00308 Bac_DnaA: Bacterial dnaA protein; InterPro: IPR013317 This entry represents the central domain of bacterial DnaA proteins [, , ] that play an important role in initiating and regulating chromosomal replication. DnaA is an ATP- and DNA-binding protein. It binds specifically to 9 bp nucleotide repeats known as dnaA boxes which are found in the chromosome origin of replication (oriC). DnaA is a protein of about 50 kDa that contains two conserved regions: the first is located in the N-terminal half and corresponds to the ATP-binding domain, the second is located in the C-terminal half and could be involved in DNA-binding. The protein may also bind the RNA polymerase beta subunit, the dnaB and dnaZ proteins, and the groE gene products (chaperonins) [].; PDB: 2KJQ_A 2Z4S_A 2Z4R_C 2HCB_B 3R8F_C 1L8Q_A 3SC3_B 3BOS_A.
Probab=93.95 E-value=0.89 Score=42.81 Aligned_cols=72 Identities=19% Similarity=0.288 Sum_probs=43.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~ 119 (512)
..+|.+|+|+|||...-+++... +.+++++.. +++..++.....- +
T Consensus 36 ~l~l~G~~G~GKTHLL~Ai~~~~~~~~~~~~v~y~~~-----~~f~~~~~~~~~~----------~-------------- 86 (219)
T PF00308_consen 36 PLFLYGPSGLGKTHLLQAIANEAQKQHPGKRVVYLSA-----EEFIREFADALRD----------G-------------- 86 (219)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHHCTTS-EEEEEH-----HHHHHHHHHHHHT----------T--------------
T ss_pred ceEEECCCCCCHHHHHHHHHHHHHhccccccceeecH-----HHHHHHHHHHHHc----------c--------------
Confidence 57999999999998755554332 345665542 2334444433110 0
Q ss_pred chhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
....+.+.+ ...+++++|..|.+...
T Consensus 87 -------------~~~~~~~~~--~~~DlL~iDDi~~l~~~ 112 (219)
T PF00308_consen 87 -------------EIEEFKDRL--RSADLLIIDDIQFLAGK 112 (219)
T ss_dssp -------------SHHHHHHHH--CTSSEEEEETGGGGTTH
T ss_pred -------------cchhhhhhh--hcCCEEEEecchhhcCc
Confidence 012334444 57899999999999875
No 380
>PRK14087 dnaA chromosomal replication initiation protein; Provisional
Probab=93.94 E-value=0.49 Score=49.73 Aligned_cols=44 Identities=14% Similarity=-0.020 Sum_probs=28.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
...+|.+++|+|||..+-+++..+ +.+++++.+ ..+.......+
T Consensus 142 npl~i~G~~G~GKTHLl~Ai~~~l~~~~~~~~v~yv~~-~~f~~~~~~~l 190 (450)
T PRK14087 142 NPLFIYGESGMGKTHLLKAAKNYIESNFSDLKVSYMSG-DEFARKAVDIL 190 (450)
T ss_pred CceEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEEH-HHHHHHHHHHH
Confidence 357899999999998876665532 245655544 44454444443
No 381
>PRK12422 chromosomal replication initiation protein; Provisional
Probab=93.87 E-value=0.26 Score=51.61 Aligned_cols=33 Identities=18% Similarity=0.204 Sum_probs=25.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (512)
...+|.+|+|+|||..+-+++..+ +.+++++..
T Consensus 142 npl~L~G~~G~GKTHLl~Ai~~~l~~~~~~v~yi~~ 177 (445)
T PRK12422 142 NPIYLFGPEGSGKTHLMQAAVHALRESGGKILYVRS 177 (445)
T ss_pred ceEEEEcCCCCCHHHHHHHHHHHHHHcCCCEEEeeH
Confidence 468999999999999887777544 456766653
No 382
>TIGR01547 phage_term_2 phage terminase, large subunit, PBSX family. This model detects members of a highly divergent family of the large subunit of phage terminase. All members are encoded by phage genomes or within prophage regions of bacterial genomes. This is a distinct family from pfam03354.
Probab=93.86 E-value=0.42 Score=49.40 Aligned_cols=126 Identities=9% Similarity=0.063 Sum_probs=68.3
Q ss_pred ceEEEcCCCCcHHHHHHHHH----Hh--cCCCEEEEEcChh-hHHHHHHHHHHhhCCCCCcEEEEcCCcc--c-cccC-C
Q 010367 45 SGIIVLPCGAGKSLVGVSAA----CR--IKKSCLCLATNAV-SVDQWAFQFKLWSTIQDDQICRFTSDSK--E-RFRG-N 113 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i----~~--~~~~~Lvl~P~~~-L~~Qw~~~~~~~~~~~~~~v~~~~~~~~--~-~~~~-~ 113 (512)
-.++.+..|||||.+++..+ .. -+.+++|+-|+.. |......++......-... ..+..... . .... +
T Consensus 3 ~~i~~GgrgSGKS~~~~~~~~~~~~~~~~~~~~~~~r~~~~sl~~sv~~~l~~~i~~~g~~-~~~~~~~~~~~i~~~~~g 81 (396)
T TIGR01547 3 EIIAKGGRRSGKTFAIALKLVEKLAINKKQQNILAARKVQNSIRDSVFKDIENLLSIEGIN-YEFKKSKSSMEIKILNTG 81 (396)
T ss_pred eEEEeCCCCcccHHHHHHHHHHHHHhcCCCcEEEEEehhhhHHHHHHHHHHHHHHHHcCCh-hheeecCCccEEEecCCC
Confidence 46788999999998865443 23 3456788878776 4444555555332111000 01111100 0 0111 1
Q ss_pred CeEEEEchhhhhccCCCchhHHHHHHHHhc-CCccEEEEcCCCCCCchHHHHHHHhccc---ceEEEEcccCCCC
Q 010367 114 AGVVVTTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPAHMFRKVISLTKS---HCKLGLTATLVRE 184 (512)
Q Consensus 114 ~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~lvIiDEaH~~~~~~~~~~l~~~~~---~~~l~LTATp~~~ 184 (512)
..|++..-. . .. +.+.. ..++++.+|||..++...+..++..+.. ...+.+|.||...
T Consensus 82 ~~i~f~g~~-------d--~~----~~ik~~~~~~~~~idEa~~~~~~~~~~l~~rlr~~~~~~~i~~t~NP~~~ 143 (396)
T TIGR01547 82 KKFIFKGLN-------D--KP----NKLKSGAGIAIIWFEEASQLTFEDIKELIPRLRETGGKKFIIFSSNPESP 143 (396)
T ss_pred eEEEeeccc-------C--Ch----hHhhCcceeeeehhhhhhhcCHHHHHHHHHHhhccCCccEEEEEcCcCCC
Confidence 223332210 0 01 12222 3468999999999988888887766642 2348999999753
No 383
>COG2255 RuvB Holliday junction resolvasome, helicase subunit [DNA replication, recombination, and repair]
Probab=93.80 E-value=0.25 Score=47.54 Aligned_cols=28 Identities=18% Similarity=0.190 Sum_probs=23.2
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
-.+.++.+|+|+|||..|..++.+++..
T Consensus 52 lDHvLl~GPPGlGKTTLA~IIA~Emgvn 79 (332)
T COG2255 52 LDHVLLFGPPGLGKTTLAHIIANELGVN 79 (332)
T ss_pred cCeEEeeCCCCCcHHHHHHHHHHHhcCC
Confidence 3578999999999999888887776644
No 384
>PTZ00361 26 proteosome regulatory subunit 4-like protein; Provisional
Probab=93.80 E-value=0.15 Score=53.00 Aligned_cols=35 Identities=23% Similarity=0.313 Sum_probs=28.2
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
..++.+|.+|+|+|||+++-+++..+..+++-+..
T Consensus 216 ~p~gVLL~GPPGTGKT~LAraIA~el~~~fi~V~~ 250 (438)
T PTZ00361 216 PPKGVILYGPPGTGKTLLAKAVANETSATFLRVVG 250 (438)
T ss_pred CCcEEEEECCCCCCHHHHHHHHHHhhCCCEEEEec
Confidence 34578999999999999999999888776655543
No 385
>PRK07399 DNA polymerase III subunit delta'; Validated
Probab=93.78 E-value=0.75 Score=45.87 Aligned_cols=37 Identities=19% Similarity=0.255 Sum_probs=27.9
Q ss_pred HHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 32 KSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 32 ~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+.+...+..++ ++..++.+|.|.||+..+..++..+.
T Consensus 14 ~~L~~~i~~~rl~ha~Lf~G~~G~Gk~~~A~~~a~~ll 51 (314)
T PRK07399 14 ELLTAAIKQNRIAPAYLFAGPEGVGRKLAALCFIEGLL 51 (314)
T ss_pred HHHHHHHHhCCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 33444555554 56889999999999999998887753
No 386
>PRK06305 DNA polymerase III subunits gamma and tau; Validated
Probab=93.77 E-value=0.41 Score=50.28 Aligned_cols=39 Identities=18% Similarity=0.170 Sum_probs=28.6
Q ss_pred HHHHHH---HHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 30 QEKSLS---KMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 30 Q~~al~---~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
|..++. .++..++ ++..++.||.|+|||.++..++..+.
T Consensus 22 q~~~v~~L~~~i~~~~i~ha~Lf~Gp~G~GKtt~A~~lAk~l~ 64 (451)
T PRK06305 22 QDAVVAVLKNALRFNRAAHAYLFSGIRGTGKTTLARIFAKALN 64 (451)
T ss_pred cHHHHHHHHHHHHcCCCceEEEEEcCCCCCHHHHHHHHHHHhc
Confidence 555544 3455544 35678999999999999999987764
No 387
>TIGR01073 pcrA ATP-dependent DNA helicase PcrA. Designed to identify pcrA members of the uvrD/rep subfamily.
Probab=93.70 E-value=0.2 Score=56.10 Aligned_cols=81 Identities=12% Similarity=0.181 Sum_probs=59.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.|.|-|++|+... .+ +.+|.+..|+|||.+.+.-+..+ + .++|+++-|...+....+.+.+..+..
T Consensus 4 ~Ln~~Q~~av~~~--~g---~~lV~AgaGSGKT~~l~~ria~Li~~~~i~P~~IL~lTFT~kAA~em~~Rl~~~~~~~-- 76 (726)
T TIGR01073 4 HLNPEQREAVKTT--EG---PLLIMAGAGSGKTRVLTHRIAHLIAEKNVAPWNILAITFTNKAAREMKERVEKLLGPV-- 76 (726)
T ss_pred ccCHHHHHHHhCC--CC---CEEEEeCCCCCHHHHHHHHHHHHHHcCCCCHHHeeeeeccHHHHHHHHHHHHHHhccc--
Confidence 5889999999742 23 78999999999999976655433 1 369999998887888888887764310
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhcc
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFG 127 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~ 127 (512)
...+.|.|+..+...
T Consensus 77 ---------------~~~~~i~TFHs~~~~ 91 (726)
T TIGR01073 77 ---------------AEDIWISTFHSMCVR 91 (726)
T ss_pred ---------------cCCcEEEcHHHHHHH
Confidence 134778898888653
No 388
>PRK08939 primosomal protein DnaI; Reviewed
Probab=93.67 E-value=0.55 Score=46.66 Aligned_cols=32 Identities=22% Similarity=0.148 Sum_probs=24.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
++.+|.+|+|+|||..+.+++..+ +.+++++.
T Consensus 157 ~gl~L~G~~G~GKThLa~Aia~~l~~~g~~v~~~~ 191 (306)
T PRK08939 157 KGLYLYGDFGVGKSYLLAAIANELAKKGVSSTLLH 191 (306)
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCCEEEEE
Confidence 478899999999999988887654 44565554
No 389
>PRK14086 dnaA chromosomal replication initiation protein; Provisional
Probab=93.64 E-value=0.42 Score=51.56 Aligned_cols=41 Identities=10% Similarity=0.011 Sum_probs=26.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAF 86 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~ 86 (512)
..+|++++|+|||..+-+++..+ +.+++++. ...++.++..
T Consensus 316 pL~LyG~sGsGKTHLL~AIa~~a~~~~~g~~V~Yit-aeef~~el~~ 361 (617)
T PRK14086 316 PLFIYGESGLGKTHLLHAIGHYARRLYPGTRVRYVS-SEEFTNEFIN 361 (617)
T ss_pred cEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEee-HHHHHHHHHH
Confidence 47899999999999877666543 23555554 3444544433
No 390
>PRK06620 hypothetical protein; Validated
Probab=93.51 E-value=0.35 Score=45.36 Aligned_cols=24 Identities=17% Similarity=0.040 Sum_probs=18.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
++.+|++|+|+|||..+-+++...
T Consensus 45 ~~l~l~Gp~G~GKThLl~a~~~~~ 68 (214)
T PRK06620 45 FTLLIKGPSSSGKTYLTKIWQNLS 68 (214)
T ss_pred ceEEEECCCCCCHHHHHHHHHhcc
Confidence 468999999999998877644443
No 391
>PRK08058 DNA polymerase III subunit delta'; Validated
Probab=93.51 E-value=0.69 Score=46.50 Aligned_cols=35 Identities=17% Similarity=0.164 Sum_probs=25.4
Q ss_pred HHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 33 SLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 33 al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+..++..++- +..++.+|.|.|||..+..++..+
T Consensus 17 ~L~~~~~~~~l~ha~Lf~G~~G~gk~~~a~~la~~l 52 (329)
T PRK08058 17 MLQNSIAKNRLSHAYLFEGAKGTGKKATALWLAKSL 52 (329)
T ss_pred HHHHHHHcCCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 34445555543 445899999999999998888665
No 392
>CHL00195 ycf46 Ycf46; Provisional
Probab=93.48 E-value=0.15 Score=53.85 Aligned_cols=35 Identities=29% Similarity=0.240 Sum_probs=29.7
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.+++.++.+|+|+|||+.+-+++...+.+++.+-+
T Consensus 258 ~pkGILL~GPpGTGKTllAkaiA~e~~~~~~~l~~ 292 (489)
T CHL00195 258 TPRGLLLVGIQGTGKSLTAKAIANDWQLPLLRLDV 292 (489)
T ss_pred CCceEEEECCCCCcHHHHHHHHHHHhCCCEEEEEh
Confidence 34678999999999999999999888888777764
No 393
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=93.42 E-value=0.52 Score=50.08 Aligned_cols=63 Identities=21% Similarity=0.179 Sum_probs=47.0
Q ss_pred HHHHHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 28 PYQEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 28 ~yQ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
+--...++.++.++ +....+|.+|+|+|||..++.++.. .+.++++++- -+...|.......+
T Consensus 246 ~tGi~~lD~~lgGG~~~gs~~li~G~~G~GKt~l~~~f~~~~~~~ge~~~y~s~-eEs~~~i~~~~~~l 313 (484)
T TIGR02655 246 SSGVVRLDEMCGGGFFKDSIILATGATGTGKTLLVSKFLENACANKERAILFAY-EESRAQLLRNAYSW 313 (484)
T ss_pred CCChHhHHHHhcCCccCCcEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEe-eCCHHHHHHHHHHc
Confidence 34556788888775 3345678899999999998877754 3568999885 44588888888765
No 394
>PRK14970 DNA polymerase III subunits gamma and tau; Provisional
Probab=93.42 E-value=0.9 Score=46.42 Aligned_cols=41 Identities=22% Similarity=0.261 Sum_probs=28.8
Q ss_pred HHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 29 YQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 29 yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...+.+...+.++. ++..++++|.|+|||..+-.++..+..
T Consensus 24 ~~~~~l~~~i~~~~~~~~~L~~G~~G~GKt~~a~~la~~l~~ 65 (367)
T PRK14970 24 HITNTLLNAIENNHLAQALLFCGPRGVGKTTCARILARKINQ 65 (367)
T ss_pred HHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHhcC
Confidence 34444555565543 456889999999999998888776653
No 395
>PRK14088 dnaA chromosomal replication initiation protein; Provisional
Probab=93.42 E-value=0.51 Score=49.50 Aligned_cols=32 Identities=16% Similarity=0.108 Sum_probs=23.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~ 75 (512)
.+.+|++|+|+|||..+-+++..+ ..+++++.
T Consensus 131 n~l~lyG~~G~GKTHLl~ai~~~l~~~~~~~~v~yi~ 167 (440)
T PRK14088 131 NPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYIT 167 (440)
T ss_pred CeEEEEcCCCCcHHHHHHHHHHHHHHhCCCCeEEEEE
Confidence 468999999999999987777554 23566554
No 396
>PRK06731 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=93.34 E-value=1.3 Score=43.07 Aligned_cols=111 Identities=16% Similarity=0.181 Sum_probs=62.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc-C--hhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N--AVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVV 117 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P-~--~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Iv 117 (512)
....+++++|+|||..+..++..+ +.++.++.. . ...+.||....... ++ .+.
T Consensus 76 ~~i~~~G~~g~GKTtl~~~l~~~l~~~~~~v~~i~~D~~ri~~~~ql~~~~~~~-~~--------------------~~~ 134 (270)
T PRK06731 76 QTIALIGPTGVGKTTTLAKMAWQFHGKKKTVGFITTDHSRIGTVQQLQDYVKTI-GF--------------------EVI 134 (270)
T ss_pred CEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEecCCCCHHHHHHHHHHhhhc-Cc--------------------eEE
Confidence 477899999999999876666543 345655553 1 24577776543321 21 121
Q ss_pred E-EchhhhhccCCCchhHHHHHHHHhc-CCccEEEEcCCCCCCc--hHHH---HHHHhccc-ceEEEEcccCCCCc
Q 010367 118 V-TTYNMVAFGGKRSEESEKIIEEIRN-REWGLLLMDEVHVVPA--HMFR---KVISLTKS-HCKLGLTATLVRED 185 (512)
Q Consensus 118 v-~T~~~l~~~~~r~~~~~~~~~~l~~-~~~~lvIiDEaH~~~~--~~~~---~~l~~~~~-~~~l~LTATp~~~~ 185 (512)
. .++..+. ..+..+.. .++++||+|-+=+... .... +++..... ...|.|+||-..++
T Consensus 135 ~~~~~~~l~----------~~l~~l~~~~~~D~ViIDt~Gr~~~~~~~l~el~~~~~~~~~~~~~LVl~a~~~~~d 200 (270)
T PRK06731 135 AVRDEAAMT----------RALTYFKEEARVDYILIDTAGKNYRASETVEEMIETMGQVEPDYICLTLSASMKSKD 200 (270)
T ss_pred ecCCHHHHH----------HHHHHHHhcCCCCEEEEECCCCCcCCHHHHHHHHHHHhhhCCCeEEEEEcCccCHHH
Confidence 1 2233222 22333322 4689999999977753 2333 33333333 24577899876443
No 397
>PRK09183 transposase/IS protein; Provisional
Probab=93.33 E-value=0.084 Score=51.16 Aligned_cols=38 Identities=16% Similarity=0.188 Sum_probs=26.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD 82 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~ 82 (512)
.+.+|.+|+|+|||..+.+++. ..+.+++++. ...+..
T Consensus 103 ~~v~l~Gp~GtGKThLa~al~~~a~~~G~~v~~~~-~~~l~~ 143 (259)
T PRK09183 103 ENIVLLGPSGVGKTHLAIALGYEAVRAGIKVRFTT-AADLLL 143 (259)
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEe-HHHHHH
Confidence 4899999999999999877653 3345676654 334443
No 398
>TIGR02640 gas_vesic_GvpN gas vesicle protein GvpN. Members of this family are the GvpN protein associated with the production of gas vesicles produced in some prokaryotes to give cells buoyancy. This family belongs to a larger family of ATPases (pfam07728).
Probab=93.29 E-value=0.22 Score=48.34 Aligned_cols=49 Identities=14% Similarity=0.255 Sum_probs=36.4
Q ss_pred cHHHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 27 RPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 27 r~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
.|..++.++.++ ..+ ++.+|.+|+|+|||.++..++..++.+++.++-+
T Consensus 4 t~~~~~l~~~~l~~l~~g--~~vLL~G~~GtGKT~lA~~la~~lg~~~~~i~~~ 55 (262)
T TIGR02640 4 TDAVKRVTSRALRYLKSG--YPVHLRGPAGTGKTTLAMHVARKRDRPVMLINGD 55 (262)
T ss_pred CHHHHHHHHHHHHHHhcC--CeEEEEcCCCCCHHHHHHHHHHHhCCCEEEEeCC
Confidence 345555555443 233 3899999999999999999998888888887643
No 399
>PRK09361 radB DNA repair and recombination protein RadB; Provisional
Probab=93.27 E-value=0.56 Score=44.25 Aligned_cols=47 Identities=28% Similarity=0.387 Sum_probs=34.6
Q ss_pred HHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcC
Q 010367 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATN 77 (512)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~ 77 (512)
...++.++.++ ...-..+.+++|+|||..++.++.. .+.+++++.-.
T Consensus 9 i~~lD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~la~~~~~~~~~v~yi~~e 60 (225)
T PRK09361 9 CKMLDELLGGGFERGTITQIYGPPGSGKTNICLQLAVEAAKNGKKVIYIDTE 60 (225)
T ss_pred cHHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEECC
Confidence 35677888654 2245688899999999998888754 35788888765
No 400
>PRK12726 flagellar biosynthesis regulator FlhF; Provisional
Probab=93.25 E-value=1 Score=45.80 Aligned_cols=47 Identities=17% Similarity=0.157 Sum_probs=30.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc-C-h-hhHHHHHHHHH
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT-N-A-VSVDQWAFQFK 89 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P-~-~-~L~~Qw~~~~~ 89 (512)
.+-.++++|+|+|||.++..++..+ +.++.+++- + + ..++||...-.
T Consensus 206 ~~ii~lvGptGvGKTTt~akLA~~l~~~g~~V~lItaDtyR~gAveQLk~yae 258 (407)
T PRK12726 206 HRIISLIGQTGVGKTTTLVKLGWQLLKQNRTVGFITTDTFRSGAVEQFQGYAD 258 (407)
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCccCccHHHHHHHHhh
Confidence 3466789999999999987766543 456666552 2 2 23667755333
No 401
>COG1223 Predicted ATPase (AAA+ superfamily) [General function prediction only]
Probab=93.19 E-value=0.36 Score=45.82 Aligned_cols=37 Identities=19% Similarity=0.272 Sum_probs=30.3
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
.+++.++.+|+|+|||.++-+++...+.|.|.+--+.
T Consensus 150 APknVLFyGppGTGKTm~Akalane~kvp~l~vkat~ 186 (368)
T COG1223 150 APKNVLFYGPPGTGKTMMAKALANEAKVPLLLVKATE 186 (368)
T ss_pred CcceeEEECCCCccHHHHHHHHhcccCCceEEechHH
Confidence 3578999999999999999999988887776654433
No 402
>PRK13833 conjugal transfer protein TrbB; Provisional
Probab=93.13 E-value=0.17 Score=50.39 Aligned_cols=55 Identities=15% Similarity=0.111 Sum_probs=39.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L 80 (512)
..+.+.|.+.+..++..+ .+.+++++||+|||...-+++..+ ..+++++=...+|
T Consensus 127 g~~~~~~~~~L~~~v~~~--~nilI~G~tGSGKTTll~aL~~~i~~~~~~~rivtiEd~~El 186 (323)
T PRK13833 127 KIMTEAQASVIRSAIDSR--LNIVISGGTGSGKTTLANAVIAEIVASAPEDRLVILEDTAEI 186 (323)
T ss_pred CCCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHHhcCCCCceEEEecCCccc
Confidence 446677888888877765 388999999999999876666654 2355555555553
No 403
>PRK00771 signal recognition particle protein Srp54; Provisional
Probab=93.08 E-value=1.2 Score=46.47 Aligned_cols=33 Identities=18% Similarity=0.105 Sum_probs=24.6
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
+...++++++|+|||.++..++..+ +.++++++
T Consensus 95 p~vI~lvG~~GsGKTTtaakLA~~L~~~g~kV~lV~ 130 (437)
T PRK00771 95 PQTIMLVGLQGSGKTTTAAKLARYFKKKGLKVGLVA 130 (437)
T ss_pred CeEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEec
Confidence 3457889999999999988777554 34666655
No 404
>PRK10416 signal recognition particle-docking protein FtsY; Provisional
Probab=93.06 E-value=1.6 Score=43.54 Aligned_cols=32 Identities=25% Similarity=0.100 Sum_probs=23.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.-..+++|+|+|||.++..++..+ +++++++.
T Consensus 115 ~vi~lvGpnGsGKTTt~~kLA~~l~~~g~~V~Li~ 149 (318)
T PRK10416 115 FVILVVGVNGVGKTTTIGKLAHKYKAQGKKVLLAA 149 (318)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCeEEEEe
Confidence 345678999999999987776544 45677765
No 405
>PRK04301 radA DNA repair and recombination protein RadA; Validated
Probab=92.93 E-value=0.59 Score=46.73 Aligned_cols=48 Identities=19% Similarity=0.315 Sum_probs=33.2
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAV 79 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~ 79 (512)
..+..++.++ ...-..|++|+|+|||..++.++... +.++++|..-..
T Consensus 89 ~~lD~~l~GGi~~g~vtei~G~~GsGKT~l~~~~~~~~~~~~~~gg~~~~~~yi~te~~ 147 (317)
T PRK04301 89 KELDELLGGGIETQSITEFYGEFGSGKTQICHQLAVNVQLPEEKGGLEGKAVYIDTEGT 147 (317)
T ss_pred HHHHHHhcCCccCCcEEEEECCCCCCHhHHHHHHHHHhccccccCCCCceEEEEeCCCC
Confidence 3455566654 22345688999999999998888653 247888886553
No 406
>PF08423 Rad51: Rad51; InterPro: IPR013632 This domain is found at the C terminus of the DNA repair and recombination protein Rad51. It is critical for DNA binding []. Rad51 is a homologue of the bacterial RecA protein. Rad51 and RecA share a core ATPase domain.; PDB: 2ZUC_A 2Z43_C 2ZUD_B 2DFL_A 2ZUB_A 2BKE_A 2KZ3_A 2CVH_B 2CVF_B 1SZP_D ....
Probab=92.92 E-value=0.24 Score=47.86 Aligned_cols=59 Identities=22% Similarity=0.273 Sum_probs=37.7
Q ss_pred HHHHHHHhCCCCcc--eEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhhHHHHHHHHHH
Q 010367 32 KSLSKMFGNGRARS--GIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 32 ~al~~~~~~~~~~~--~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
++++.++++|-..+ .=|++|.|+|||-.++.++... .+++++|......-.+-..++.+
T Consensus 25 ~~lD~~L~GGi~~g~itEi~G~~gsGKTql~l~l~~~~~l~~~~~g~~~~vvyidTe~~f~~~Rl~~i~~ 94 (256)
T PF08423_consen 25 KSLDELLGGGIPTGSITEIVGESGSGKTQLCLQLAVNVQLPEEIGGLGGKVVYIDTEGTFSPERLQQIAE 94 (256)
T ss_dssp HHHHHHTTSSEETTSEEEEEESTTSSHHHHHHHHHHHTTSGGCTTSSSSEEEEEESSSSS-HHHHHHHHH
T ss_pred HHHHHhhCCCCCCCcEEEEEEecccccchHHHHHHHHhhcccccccCCCceEEEeCCCCCCHHHHHHHhh
Confidence 35666776542222 3378999999999988777543 34799999777654443444443
No 407
>PRK12727 flagellar biosynthesis regulator FlhF; Provisional
Probab=92.89 E-value=0.97 Score=47.91 Aligned_cols=32 Identities=25% Similarity=0.242 Sum_probs=22.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~ 75 (512)
....+++|+|+|||.++..++..+ ++++.++.
T Consensus 351 ~vIaLVGPtGvGKTTtaakLAa~la~~~~gkkVaLId 387 (559)
T PRK12727 351 GVIALVGPTGAGKTTTIAKLAQRFAAQHAPRDVALVT 387 (559)
T ss_pred CEEEEECCCCCCHHHHHHHHHHHHHHhcCCCceEEEe
Confidence 467788999999999876666432 24565554
No 408
>PRK10867 signal recognition particle protein; Provisional
Probab=92.84 E-value=0.73 Score=47.92 Aligned_cols=32 Identities=31% Similarity=0.236 Sum_probs=24.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~ 75 (512)
.-.++++++|+|||.++..++..+ ++++++++
T Consensus 101 ~vI~~vG~~GsGKTTtaakLA~~l~~~~G~kV~lV~ 136 (433)
T PRK10867 101 TVIMMVGLQGAGKTTTAGKLAKYLKKKKKKKVLLVA 136 (433)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 346788999999999988777543 45666665
No 409
>cd01125 repA Hexameric Replicative Helicase RepA. RepA is encoded by a plasmid, which is found in most Gram negative bacteria. RepA is a 5'-3' DNA helicase which can utilize ATP, GTP and CTP to a lesser extent.
Probab=92.78 E-value=0.86 Score=43.50 Aligned_cols=32 Identities=25% Similarity=0.326 Sum_probs=25.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---------------CCCEEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---------------KKSCLCLAT 76 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---------------~~~~Lvl~P 76 (512)
-++|++|.|+|||..++.++..+ ..+||+++-
T Consensus 3 ~~ll~g~~G~GKS~lal~la~~va~G~~~~g~~~~~~~~~~Vlyi~~ 49 (239)
T cd01125 3 VSALVAPGGTGKSSLLLVLALAMALGKNLFGGGLKVTEPGRVVYLSA 49 (239)
T ss_pred eeEEEcCCCCCHHHHHHHHHHHHhcCccccCCccccCCCceEEEEEC
Confidence 47999999999999988777531 247888883
No 410
>COG4626 Phage terminase-like protein, large subunit [General function prediction only]
Probab=92.72 E-value=1.7 Score=45.92 Aligned_cols=64 Identities=20% Similarity=0.271 Sum_probs=46.0
Q ss_pred CCCCCCcHHHHHHHHHHHhC-----C--CCcceEEEcCCCCcHHHHHHHHHHh-------cCCCEEEEEcChhhHHHH
Q 010367 21 KPHAQPRPYQEKSLSKMFGN-----G--RARSGIIVLPCGAGKSLVGVSAACR-------IKKSCLCLATNAVSVDQW 84 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~-----~--~~~~~il~~~tG~GKTl~~i~~i~~-------~~~~~Lvl~P~~~L~~Qw 84 (512)
...+.|-|||.-.+..+++- + +-..++|..|-|-|||..+..++.. .+..+.|++|+..-+.+-
T Consensus 57 ~~p~~l~PwQkFiia~l~G~~~k~T~~rrf~e~fI~v~RkngKt~l~A~i~~~~~l~~~~~~~~~~i~A~s~~qa~~~ 134 (546)
T COG4626 57 GFPESLEPWQKFIVAALFGFYDKQTGIRRFKEAFIFIPRKNGKSTLAAGIMMTALLLNWRSGAGIYILAPSVEQAANS 134 (546)
T ss_pred CCccccchHHHHHHHHHhceeecCCCceEEEEEEEEEecCCchHHHHHHHHHHHHHhhhhcCCcEEEEeccHHHHHHh
Confidence 44578999999999998741 1 2246789999999999886644432 245799999987644443
No 411
>PRK10865 protein disaggregation chaperone; Provisional
Probab=92.70 E-value=0.42 Score=54.39 Aligned_cols=93 Identities=15% Similarity=0.220 Sum_probs=51.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~ 122 (512)
..++++|+|+|||.++-.++..+. ...+|.+.-...... .....+.|.++.-+ |... -+
T Consensus 600 ~~Lf~Gp~G~GKT~lA~aLa~~l~~~~~~~i~id~se~~~~--~~~~~LiG~~pgy~----g~~~-------------~g 660 (857)
T PRK10865 600 SFLFLGPTGVGKTELCKALANFMFDSDDAMVRIDMSEFMEK--HSVSRLVGAPPGYV----GYEE-------------GG 660 (857)
T ss_pred eEEEECCCCCCHHHHHHHHHHHhhcCCCcEEEEEhHHhhhh--hhHHHHhCCCCccc----ccch-------------hH
Confidence 578999999999999988886653 223343333333321 12233334333211 1000 00
Q ss_pred hhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc
Q 010367 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (512)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~ 169 (512)
.+...+....++++++||++.+....+..++..+
T Consensus 661 -------------~l~~~v~~~p~~vLllDEieka~~~v~~~Ll~il 694 (857)
T PRK10865 661 -------------YLTEAVRRRPYSVILLDEVEKAHPDVFNILLQVL 694 (857)
T ss_pred -------------HHHHHHHhCCCCeEEEeehhhCCHHHHHHHHHHH
Confidence 1122233356789999999998877666555544
No 412
>CHL00095 clpC Clp protease ATP binding subunit
Probab=92.66 E-value=0.27 Score=55.81 Aligned_cols=24 Identities=25% Similarity=0.210 Sum_probs=20.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..++++|+|+|||.++-.++..+.
T Consensus 541 ~~lf~Gp~GvGKt~lA~~LA~~l~ 564 (821)
T CHL00095 541 SFLFSGPTGVGKTELTKALASYFF 564 (821)
T ss_pred EEEEECCCCCcHHHHHHHHHHHhc
Confidence 468999999999999998887764
No 413
>KOG1807 consensus Helicases [Replication, recombination and repair]
Probab=92.66 E-value=0.2 Score=54.01 Aligned_cols=65 Identities=20% Similarity=0.202 Sum_probs=53.9
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhhHHHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
...|-.-|..|...++... -.|+.+|+|+|||++++.++..+ .-|+||+|=|...++|....+..
T Consensus 376 ~~ildsSq~~A~qs~ltye---lsliqgppGTgkt~vtlkav~tLL~n~s~~~~~epIlvvC~Tnhavdq~ligiy~ 449 (1025)
T KOG1807|consen 376 LVILDSSQQFAKQSKLTYE---LSLIQGPPGTGKTLVTLKAVDTLLLNSSGYTEPEPILVVCLTNHAVDQYLIGIYY 449 (1025)
T ss_pred ceeecHHHHHHHHHHhhhh---hheeecCCCCCceeehHHHHHHHHhcccccccccceeeeehhhHHHHHHHHHHHh
Confidence 3567778999999998775 78999999999999998888654 24899999999889988776664
No 414
>TIGR02782 TrbB_P P-type conjugative transfer ATPase TrbB. The TrbB protein is found in the trb locus of Agrobacterium Ti plasmids where it is involved in the type IV secretion system for plasmid conjugative transfer. TrbB is a homolog of the vir system VirB11 ATPase, and the Flp pilus sytem ATPase TadA.
Probab=92.60 E-value=0.24 Score=49.09 Aligned_cols=52 Identities=13% Similarity=0.143 Sum_probs=36.2
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChh
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAV 79 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~ 79 (512)
+-+.|.+.+..++..+ .+.+++++||+|||...-+++..+ ..+++++=...+
T Consensus 117 ~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~al~~~i~~~~~~~ri~tiEd~~E 173 (299)
T TIGR02782 117 MTAAQRDVLREAVLAR--KNILVVGGTGSGKTTLANALLAEIAKNDPTDRVVIIEDTRE 173 (299)
T ss_pred CCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHHhhccCCCceEEEECCchh
Confidence 4444666677766654 489999999999999987777665 245655555444
No 415
>PHA03372 DNA packaging terminase subunit 1; Provisional
Probab=92.52 E-value=0.83 Score=48.74 Aligned_cols=122 Identities=16% Similarity=0.268 Sum_probs=73.6
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHH----HHHHHhhCCCCCcEEEEcCCc-ccccc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWA----FQFKLWSTIQDDQICRFTSDS-KERFR 111 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~----~~~~~~~~~~~~~v~~~~~~~-~~~~~ 111 (512)
+++..+..-|=--|||+..+.+|+-+ +-++.+++..+-..+-.. ..+++|++-. .+..-.++. --..+
T Consensus 201 KQkaTVFLVPRRHGKTWf~VpiIsllL~s~~gI~IGYvAHqKhvs~~Vf~EI~~~lrrwF~~~--~vi~~k~~tI~~s~p 278 (668)
T PHA03372 201 KQKATVFLVPRRHGKTWFIIPIISFLLKNIIGISIGYVAHQKHVSQFVLKEVEFRCRRMFPRK--HTIENKDNVISIDHR 278 (668)
T ss_pred hccceEEEecccCCceehHHHHHHHHHHhhcCceEEEEeeHHHHHHHHHHHHHHHHhhhcCcc--ceeeecCcEEEEecC
Confidence 55678889999999999876666443 348999998886444333 4556786432 221111100 00000
Q ss_pred C-CCeEEEEc-hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhccc--ceEEEEccc
Q 010367 112 G-NAGVVVTT-YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS--HCKLGLTAT 180 (512)
Q Consensus 112 ~-~~~Ivv~T-~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~--~~~l~LTAT 180 (512)
+ .+.++.++ ++ .+.++...++++++||||.++.+.+..++..+.- ...|..|-|
T Consensus 279 g~Kst~~fasc~n---------------~NsiRGQ~fnll~VDEA~FI~~~a~~tilgfm~q~~~KiIfISS~ 336 (668)
T PHA03372 279 GAKSTALFASCYN---------------TNSIRGQNFHLLLVDEAHFIKKDAFNTILGFLAQNTTKIIFISST 336 (668)
T ss_pred CCcceeeehhhcc---------------CccccCCCCCEEEEehhhccCHHHHHHhhhhhcccCceEEEEeCC
Confidence 0 11222222 21 2345568999999999999999999998877642 344555544
No 416
>PF03237 Terminase_6: Terminase-like family; InterPro: IPR004921 The terminase is a component of the molecular motor that translocates genomic DNA into empty capsids during DNA packaging []. The large subunit heterodimerises with the small terminase protein, which is docked on the capsid portal protein. The latter forms a ring through which genomic DNA is translocated into the capsid. The terminase protein may have or induce an endonuclease activity to cleave DNA after encapsidation. This entry represents a family of terminase large subunits found in a variety of the Caudovirales and prophage regions of bacterial genomes. Homologues are also found in Gene Transfer Agents (GTA) [], including ORFg2 (RCAP_rcc01683) of the GTA of Rhodobacter capsulatus (Rhodopseudomonas capsulata) [see Fig.1, in ].; PDB: 2O0K_A 3CPE_A 2O0J_A 2O0H_A 3C6H_A 3C6A_A.
Probab=92.47 E-value=1.9 Score=43.64 Aligned_cols=109 Identities=17% Similarity=0.080 Sum_probs=48.5
Q ss_pred EEEcCCCCcHHHHHHHHH-Hh---cCC-CEEEEEcChhhHHHH-HH---HHHHhhCCCCCcEEEE-cCCccccccCCCeE
Q 010367 47 IIVLPCGAGKSLVGVSAA-CR---IKK-SCLCLATNAVSVDQW-AF---QFKLWSTIQDDQICRF-TSDSKERFRGNAGV 116 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i-~~---~~~-~~Lvl~P~~~L~~Qw-~~---~~~~~~~~~~~~v~~~-~~~~~~~~~~~~~I 116 (512)
++.++.|+|||.+....+ .. ... +.++++|+..-+.+. .. .+..+..- ...+..- .....-.+.....|
T Consensus 1 ~i~~~r~~GKT~~~~~~~~~~~~~~~~~~~vi~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~nG~~i 79 (384)
T PF03237_consen 1 LINGGRGSGKTTLIAIWFLWWALTRPPGRRVIIASTYRQARDIFGRFWKGIIELLPS-WFEIKFNEWNDRKIILPNGSRI 79 (384)
T ss_dssp -EEE-SSS-HHHHHHHHHHHHHHSSSS--EEEEEESSHHHHHHHHHHHHHHHHTS-T-TTS--EEEE-SSEEEETTS-EE
T ss_pred CCcCCccccHHHHHHHHHHHHHhhCCCCcEEEEecCHHHHHHHHHHhHHHHHHHHHH-hcCcccccCCCCcEEecCceEE
Confidence 578899999999865433 22 232 456666666544442 11 12222111 1122211 11111112233445
Q ss_pred EEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHH
Q 010367 117 VVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (512)
Q Consensus 117 vv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~ 167 (512)
.+.+.+.- .....+....++++|+||+-..+...+...+.
T Consensus 80 ~~~~~~~~-----------~~~~~~~G~~~~~i~iDE~~~~~~~~~~~~~~ 119 (384)
T PF03237_consen 80 QFRGADSP-----------DSGDNIRGFEYDLIIIDEAAKVPDDAFSELIR 119 (384)
T ss_dssp EEES----------------SHHHHHTS--SEEEEESGGGSTTHHHHHHHH
T ss_pred EEeccccc-----------cccccccccccceeeeeecccCchHHHHHHHH
Confidence 55554311 11345556789999999999888776655443
No 417
>PRK05564 DNA polymerase III subunit delta'; Validated
Probab=92.47 E-value=1.8 Score=43.09 Aligned_cols=41 Identities=27% Similarity=0.256 Sum_probs=30.2
Q ss_pred HHHHHHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+...+.+..++..++- +..++++|-|.|||..+..++..+.
T Consensus 10 ~~~~~~l~~~~~~~~~~ha~Lf~G~~G~Gk~~la~~~a~~l~ 51 (313)
T PRK05564 10 ENIKNRIKNSIIKNRFSHAHIIVGEDGIGKSLLAKEIALKIL 51 (313)
T ss_pred HHHHHHHHHHHHcCCCCceEEeECCCCCCHHHHHHHHHHHHc
Confidence 4455556666766543 4558999999999999998887664
No 418
>CHL00206 ycf2 Ycf2; Provisional
Probab=92.42 E-value=0.5 Score=56.69 Aligned_cols=43 Identities=16% Similarity=0.146 Sum_probs=35.2
Q ss_pred CCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHH
Q 010367 41 GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQW 84 (512)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw 84 (512)
..+++.++.||+|+|||+.|=++|...+-|++-|..+. ++..|
T Consensus 1628 ~pPKGILLiGPPGTGKTlLAKALA~es~VPFIsISgs~-fl~~~ 1670 (2281)
T CHL00206 1628 SPSRGILVIGSIGTGRSYLVKYLATNSYVPFITVFLNK-FLDNK 1670 (2281)
T ss_pred CCCCceEEECCCCCCHHHHHHHHHHhcCCceEEEEHHH-Hhhcc
Confidence 34578899999999999999999999999988877644 45544
No 419
>COG1066 Sms Predicted ATP-dependent serine protease [Posttranslational modification, protein turnover, chaperones]
Probab=92.40 E-value=1.2 Score=45.20 Aligned_cols=102 Identities=19% Similarity=0.271 Sum_probs=70.8
Q ss_pred HHHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc--CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010367 30 QEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (512)
Q Consensus 30 Q~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~ 105 (512)
...-++..++++ +..-.+|-+++|.|||..-+.+++.+ .+++|+|+--- ...||+-...+. +++.
T Consensus 78 g~~EldRVLGGG~V~Gs~iLIgGdPGIGKSTLLLQva~~lA~~~~vLYVsGEE-S~~QiklRA~RL-~~~~--------- 146 (456)
T COG1066 78 GIEELDRVLGGGLVPGSVILIGGDPGIGKSTLLLQVAARLAKRGKVLYVSGEE-SLQQIKLRADRL-GLPT--------- 146 (456)
T ss_pred ChHHHHhhhcCCcccccEEEEccCCCCCHHHHHHHHHHHHHhcCcEEEEeCCc-CHHHHHHHHHHh-CCCc---------
Confidence 445567777775 22234556899999998887777655 34899999755 599999998886 4432
Q ss_pred ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch
Q 010367 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~ 160 (512)
.++.+..... .+.+...+...+++++|+|=.+.+-.+
T Consensus 147 --------~~l~l~aEt~----------~e~I~~~l~~~~p~lvVIDSIQT~~s~ 183 (456)
T COG1066 147 --------NNLYLLAETN----------LEDIIAELEQEKPDLVVIDSIQTLYSE 183 (456)
T ss_pred --------cceEEehhcC----------HHHHHHHHHhcCCCEEEEeccceeecc
Confidence 2244444332 245567777789999999999988643
No 420
>COG3973 Superfamily I DNA and RNA helicases [General function prediction only]
Probab=92.35 E-value=0.29 Score=51.74 Aligned_cols=44 Identities=18% Similarity=0.258 Sum_probs=32.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhhHHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
-.++.+..|||||.+|+-=++.+ .++|||+.|++...+-....+
T Consensus 228 ilVVQGaAGSGKTtiALHRvAyLlY~~R~~l~~k~vlvl~PN~vFleYis~VL 280 (747)
T COG3973 228 ILVVQGAAGSGKTTIALHRVAYLLYGYRGPLQAKPVLVLGPNRVFLEYISRVL 280 (747)
T ss_pred eEEEecCCCCCchhHHHHHHHHHHhccccccccCceEEEcCcHHHHHHHHHhc
Confidence 56778999999999987544332 357999999998665444433
No 421
>KOG0729 consensus 26S proteasome regulatory complex, ATPase RPT1 [Posttranslational modification, protein turnover, chaperones]
Probab=92.33 E-value=0.51 Score=44.88 Aligned_cols=43 Identities=21% Similarity=0.385 Sum_probs=31.0
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHH
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWA 85 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~ 85 (512)
.++..++.+|+|+|||+++-+.+.+.. .|.|=+--++|++.+.
T Consensus 210 ppkgvllygppgtgktl~aravanrtd-acfirvigselvqkyv 252 (435)
T KOG0729|consen 210 PPKGVLLYGPPGTGKTLCARAVANRTD-ACFIRVIGSELVQKYV 252 (435)
T ss_pred CCCceEEeCCCCCchhHHHHHHhcccC-ceEEeehhHHHHHHHh
Confidence 456889999999999999988776554 3445455566766443
No 422
>PRK04132 replication factor C small subunit; Provisional
Probab=92.29 E-value=0.71 Score=51.88 Aligned_cols=90 Identities=11% Similarity=0.228 Sum_probs=57.2
Q ss_pred EcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChh-hHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchh
Q 010367 49 VLPCGAGKSLVGVSAACRI-----KKSCLCLATNAV-SVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (512)
Q Consensus 49 ~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~-L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~ 122 (512)
.+|.+.|||.++.+++..+ +..++-+-++.. =+++..+.+..+....+ +
T Consensus 572 ~lPh~lGKTT~A~ala~~l~g~~~~~~~lElNASd~rgid~IR~iIk~~a~~~~-------------------~------ 626 (846)
T PRK04132 572 NLPTVLHNTTAALALARELFGENWRHNFLELNASDERGINVIREKVKEFARTKP-------------------I------ 626 (846)
T ss_pred CCCCcccHHHHHHHHHHhhhcccccCeEEEEeCCCcccHHHHHHHHHHHHhcCC-------------------c------
Confidence 4699999999999998876 335777766653 24444444444321110 0
Q ss_pred hhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH---HHHHhcccceEEEEcccCC
Q 010367 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR---KVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~---~~l~~~~~~~~l~LTATp~ 182 (512)
....+.++|+||||.+...... +.+.......++.|++++.
T Consensus 627 -------------------~~~~~KVvIIDEaD~Lt~~AQnALLk~lEep~~~~~FILi~N~~ 670 (846)
T PRK04132 627 -------------------GGASFKIIFLDEADALTQDAQQALRRTMEMFSSNVRFILSCNYS 670 (846)
T ss_pred -------------------CCCCCEEEEEECcccCCHHHHHHHHHHhhCCCCCeEEEEEeCCh
Confidence 0024579999999999865444 4444444667888887774
No 423
>KOG0734 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=92.28 E-value=0.84 Score=47.70 Aligned_cols=34 Identities=21% Similarity=0.288 Sum_probs=29.4
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
-+++.++++|+|+|||+.+=+++-+.+-|+...+
T Consensus 336 LPKGVLLvGPPGTGKTlLARAvAGEA~VPFF~~s 369 (752)
T KOG0734|consen 336 LPKGVLLVGPPGTGKTLLARAVAGEAGVPFFYAS 369 (752)
T ss_pred CCCceEEeCCCCCchhHHHHHhhcccCCCeEecc
Confidence 4578999999999999999999988888877654
No 424
>TIGR02236 recomb_radA DNA repair and recombination protein RadA. This family consists exclusively of archaeal RadA protein, a homolog of bacterial RecA (TIGR02012), eukaryotic RAD51 (TIGR02239), and archaeal RadB (TIGR02237). This protein is involved in DNA repair and recombination. The member from Pyrococcus horikoshii contains an intein.
Probab=92.18 E-value=0.92 Score=45.18 Aligned_cols=47 Identities=17% Similarity=0.298 Sum_probs=33.1
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChh
Q 010367 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAV 79 (512)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~ 79 (512)
.++.++.++ ...-..|++|+|+|||..++.++... .+++++|.....
T Consensus 83 ~lD~~l~GGi~~g~i~ei~G~~g~GKT~l~~~~~~~~~~~~~~g~~~~~~~yi~te~~ 140 (310)
T TIGR02236 83 ELDELLGGGIETQAITEVFGEFGSGKTQICHQLAVNVQLPEEKGGLGGKAVYIDTENT 140 (310)
T ss_pred HHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhcCCcccCCCcceEEEEECCCC
Confidence 455666654 22345688999999999988887653 347888886553
No 425
>TIGR01243 CDC48 AAA family ATPase, CDC48 subfamily. This subfamily of the AAA family ATPases includes two members each from three archaeal species. It also includes yeast CDC48 (cell division control protein 48) and the human ortholog, transitional endoplasmic reticulum ATPase (valosin-containing protein). These proteins in eukaryotes are involved in the budding and transfer of membrane from the transitional endoplasmic reticulum to the Golgi apparatus.
Probab=92.13 E-value=0.82 Score=51.37 Aligned_cols=33 Identities=18% Similarity=0.309 Sum_probs=26.5
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.++.+|.+|+|+|||..+-.++..++.+++.+.
T Consensus 212 ~~giLL~GppGtGKT~laraia~~~~~~~i~i~ 244 (733)
T TIGR01243 212 PKGVLLYGPPGTGKTLLAKAVANEAGAYFISIN 244 (733)
T ss_pred CceEEEECCCCCChHHHHHHHHHHhCCeEEEEe
Confidence 357889999999999998888887776665554
No 426
>PRK13894 conjugal transfer ATPase TrbB; Provisional
Probab=92.09 E-value=0.3 Score=48.80 Aligned_cols=54 Identities=9% Similarity=0.105 Sum_probs=37.6
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhh
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVS 80 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L 80 (512)
.+.+.|.+.+..++..+ .+.+++++||+|||...-+++... ..+++++-.+.++
T Consensus 132 ~~~~~~~~~L~~~v~~~--~~ilI~G~tGSGKTTll~aL~~~~~~~~~~~rivtIEd~~El 190 (319)
T PRK13894 132 IMTAAQREAIIAAVRAH--RNILVIGGTGSGKTTLVNAIINEMVIQDPTERVFIIEDTGEI 190 (319)
T ss_pred CCCHHHHHHHHHHHHcC--CeEEEECCCCCCHHHHHHHHHHhhhhcCCCceEEEEcCCCcc
Confidence 35567888887776655 489999999999997766666542 2356665555553
No 427
>KOG0740 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.08 E-value=0.34 Score=49.68 Aligned_cols=46 Identities=13% Similarity=0.249 Sum_probs=37.6
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHH
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
.++.++.+|.|.|||..+-+++.+.+..+.-|.|+. |..-|..+-+
T Consensus 186 ~rglLLfGPpgtGKtmL~~aiAsE~~atff~iSass-LtsK~~Ge~e 231 (428)
T KOG0740|consen 186 VRGLLLFGPPGTGKTMLAKAIATESGATFFNISASS-LTSKYVGESE 231 (428)
T ss_pred cchhheecCCCCchHHHHHHHHhhhcceEeeccHHH-hhhhccChHH
Confidence 457789999999999999999999998888888865 6766654443
No 428
>KOG0737 consensus AAA+-type ATPase [Posttranslational modification, protein turnover, chaperones]
Probab=92.01 E-value=0.75 Score=45.90 Aligned_cols=48 Identities=13% Similarity=0.217 Sum_probs=37.1
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.++.++.+|+|+|||..|-+.+.+.+.+++=|.- ..|..-|..+-.+.
T Consensus 127 ~kGiLL~GPpG~GKTmlAKA~Akeaga~fInv~~-s~lt~KWfgE~eKl 174 (386)
T KOG0737|consen 127 PKGILLYGPPGTGKTMLAKAIAKEAGANFINVSV-SNLTSKWFGEAQKL 174 (386)
T ss_pred CccceecCCCCchHHHHHHHHHHHcCCCcceeec-cccchhhHHHHHHH
Confidence 4578889999999999999999998877665554 33567777666554
No 429
>TIGR03346 chaperone_ClpB ATP-dependent chaperone ClpB. Members of this protein family are the bacterial ATP-dependent chaperone ClpB. This protein belongs to the AAA family, ATPases associated with various cellular activities (pfam00004). This molecular chaperone does not act as a protease, but rather serves to disaggregate misfolded and aggregated proteins.
Probab=91.95 E-value=0.51 Score=53.86 Aligned_cols=93 Identities=15% Similarity=0.256 Sum_probs=52.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC--CEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK--SCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYN 122 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~--~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~ 122 (512)
..++.+|+|+|||.++-.++..+.+ ..++.+.-...... ....++.+.++.-++ |+
T Consensus 597 ~~Lf~Gp~GvGKt~lA~~La~~l~~~~~~~i~~d~s~~~~~--~~~~~l~g~~~g~~g--------------------~~ 654 (852)
T TIGR03346 597 SFLFLGPTGVGKTELAKALAEFLFDDEDAMVRIDMSEYMEK--HSVARLIGAPPGYVG--------------------YE 654 (852)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHhcCCCCcEEEEechhhccc--chHHHhcCCCCCccC--------------------cc
Confidence 5789999999999999988877632 23343333332221 112233233322110 10
Q ss_pred hhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc
Q 010367 123 MVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT 169 (512)
Q Consensus 123 ~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~ 169 (512)
. ...+...+....+.+|++||++.+....+..++..+
T Consensus 655 ~----------~g~l~~~v~~~p~~vlllDeieka~~~v~~~Ll~~l 691 (852)
T TIGR03346 655 E----------GGQLTEAVRRKPYSVVLFDEVEKAHPDVFNVLLQVL 691 (852)
T ss_pred c----------ccHHHHHHHcCCCcEEEEeccccCCHHHHHHHHHHH
Confidence 0 011223333466789999999998877666555544
No 430
>TIGR00064 ftsY signal recognition particle-docking protein FtsY. There is a weak division between FtsY and SRP54; both are GTPases. In E.coli, ftsY is an essential gene located in an operon with cell division genes ftsE and ftsX, but its apparent function is as the signal recognition particle docking protein.
Probab=91.93 E-value=2.9 Score=40.78 Aligned_cols=32 Identities=28% Similarity=0.203 Sum_probs=24.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
+-.++++|+|+|||.++..++..+ +++++++.
T Consensus 73 ~vi~l~G~~G~GKTTt~akLA~~l~~~g~~V~li~ 107 (272)
T TIGR00064 73 NVILFVGVNGVGKTTTIAKLANKLKKQGKSVLLAA 107 (272)
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 456778999999999987777544 45677766
No 431
>TIGR03345 VI_ClpV1 type VI secretion ATPase, ClpV1 family. Members of this protein family are homologs of ClpB, an ATPase associated with chaperone-related functions. These ClpB homologs, designated ClpV1, are a key component of the bacterial pathogenicity-associated type VI secretion system.
Probab=91.82 E-value=0.86 Score=51.84 Aligned_cols=38 Identities=26% Similarity=0.387 Sum_probs=29.3
Q ss_pred HHHHHHHHHh---CCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 30 QEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 30 Q~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|.+-+..++. .+...+.+|++|+|+|||.++-.++..+
T Consensus 192 r~~ei~~~i~~l~r~~~~n~lLvG~pGvGKTal~~~La~~i 232 (852)
T TIGR03345 192 RDDEIRQMIDILLRRRQNNPILTGEAGVGKTAVVEGLALRI 232 (852)
T ss_pred CHHHHHHHHHHHhcCCcCceeEECCCCCCHHHHHHHHHHHH
Confidence 6666776653 5445689999999999999988777665
No 432
>PRK05800 cobU adenosylcobinamide kinase/adenosylcobinamide-phosphate guanylyltransferase; Validated
Probab=91.81 E-value=0.32 Score=43.84 Aligned_cols=47 Identities=19% Similarity=0.064 Sum_probs=40.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..+|.+++|+|||..+..++...+.+++++++....-+.|.+.+..+
T Consensus 3 ~ili~G~~~sGKS~~a~~l~~~~~~~~~~iat~~~~~~e~~~ri~~h 49 (170)
T PRK05800 3 LILVTGGARSGKSRFAERLAAQSGLQVLYIATAQPFDDEMAARIAHH 49 (170)
T ss_pred EEEEECCCCccHHHHHHHHHHHcCCCcEeCcCCCCChHHHHHHHHHH
Confidence 46889999999999999999888888999998777777787777664
No 433
>cd00544 CobU Adenosylcobinamide kinase / adenosylcobinamide phosphate guanyltransferase (CobU). CobU is bifunctional cobalbumin biosynthesis enzymes which display adenosylcobinamide kinase and adenosylcobinamide phosphate guanyltransferase activity. This enzyme is a homotrimer with a propeller-like shape.
Probab=91.77 E-value=0.4 Score=43.19 Aligned_cols=46 Identities=17% Similarity=0.078 Sum_probs=39.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.+|.+++|+|||..+..++...+.++++++....+-..|.+.+.++
T Consensus 2 ~li~G~~~sGKS~~a~~~~~~~~~~~~y~at~~~~d~em~~rI~~H 47 (169)
T cd00544 2 ILVTGGARSGKSRFAERLAAELGGPVTYIATAEAFDDEMAERIARH 47 (169)
T ss_pred EEEECCCCCCHHHHHHHHHHhcCCCeEEEEccCcCCHHHHHHHHHH
Confidence 4788999999999999998887789999999888777777776664
No 434
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=91.57 E-value=1.2 Score=43.47 Aligned_cols=40 Identities=23% Similarity=0.179 Sum_probs=29.3
Q ss_pred cHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHh
Q 010367 27 RPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 27 r~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
|+...+.+...+.. ...+-..|+++.|.|||..+..++..
T Consensus 1 re~~~~~l~~~L~~~~~~~~~v~I~G~~G~GKT~LA~~~~~~ 42 (287)
T PF00931_consen 1 REKEIEKLKDWLLDNSNEVRVVAIVGMGGIGKTTLARQVARD 42 (287)
T ss_dssp -HHHHHHHHHHHHTTTTSSEEEEEEESTTSSHHHHHHHHHCH
T ss_pred CHHHHHHHHHHhhCCCCCeEEEEEEcCCcCCcceeeeecccc
Confidence 45566666666555 34467788899999999999988865
No 435
>COG3598 RepA RecA-family ATPase [DNA replication, recombination, and repair]
Probab=91.54 E-value=1.3 Score=43.46 Aligned_cols=113 Identities=8% Similarity=0.133 Sum_probs=58.6
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-------------CCCEEEEEcChhhHHHHHHHH---HHhhC
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAFQF---KLWST 93 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-------------~~~~Lvl~P~~~L~~Qw~~~~---~~~~~ 93 (512)
|-+.+..++..+. ..++.++-|+|||+..+.+...+ .++||+|.---. .+.....+ ..-++
T Consensus 78 ~P~lId~~fr~g~--~~~~~gdsg~GKttllL~l~IalaaG~~lfG~~v~epGkvlyvslEl~-re~~L~Rl~~v~a~mg 154 (402)
T COG3598 78 SPQLIDEFFRKGY--VSILYGDSGVGKTTLLLYLCIALAAGKNLFGNKVKEPGKVLYVSLELY-REDILERLEPVRARMG 154 (402)
T ss_pred ChhhhhHHhhcCe--eEEEecCCcccHhHHHHHHHHHHHhhHHHhcccccCCCeEEEEEeccC-hHHHHHHHHHHHHHcC
Confidence 5566777777763 67778999999999865444221 146888763221 22222233 33347
Q ss_pred CCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCC
Q 010367 94 IQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVV 157 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~ 157 (512)
++|.+|..+.--.-+-.....+++ .+ .|. .++...+...++++||||-.=.+
T Consensus 155 LsPadvrn~dltd~~Gaa~~~d~l--~p-kl~---------rRfek~~~Q~rp~~vViDp~v~f 206 (402)
T COG3598 155 LSPADVRNMDLTDVSGAADESDVL--SP-KLY---------RRFEKILEQKRPDFVVIDPFVAF 206 (402)
T ss_pred CChHhhhheeccccccCCCccccc--cH-HHH---------HHHHHHHHHhCCCeEEEcchhhh
Confidence 777655433220000001112222 22 222 22333344468899999965443
No 436
>COG2804 PulE Type II secretory pathway, ATPase PulE/Tfp pilus assembly pathway, ATPase PilB [Cell motility and secretion / Intracellular trafficking and secretion]
Probab=91.43 E-value=0.34 Score=50.42 Aligned_cols=43 Identities=19% Similarity=0.305 Sum_probs=33.3
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
+.|+|.+.+..++...+ .=.++.+|||||||.+..+++..++.
T Consensus 242 ~~~~~~~~~~~~~~~p~-GliLvTGPTGSGKTTTLY~~L~~ln~ 284 (500)
T COG2804 242 MSPFQLARLLRLLNRPQ-GLILVTGPTGSGKTTTLYAALSELNT 284 (500)
T ss_pred CCHHHHHHHHHHHhCCC-eEEEEeCCCCCCHHHHHHHHHHHhcC
Confidence 47888889998887752 23456699999999998888877753
No 437
>KOG0745 consensus Putative ATP-dependent Clp-type protease (AAA+ ATPase superfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=91.41 E-value=0.21 Score=50.67 Aligned_cols=30 Identities=20% Similarity=0.306 Sum_probs=26.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
+.++.+|||+|||+.+-+++.-+.-|+.|.
T Consensus 228 NvLllGPtGsGKTllaqTLAr~ldVPfaIc 257 (564)
T KOG0745|consen 228 NVLLLGPTGSGKTLLAQTLARVLDVPFAIC 257 (564)
T ss_pred cEEEECCCCCchhHHHHHHHHHhCCCeEEe
Confidence 789999999999999999999998886553
No 438
>PLN03186 DNA repair protein RAD51 homolog; Provisional
Probab=91.39 E-value=1.1 Score=45.22 Aligned_cols=49 Identities=14% Similarity=0.180 Sum_probs=33.2
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVS 80 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L 80 (512)
..++.++.++ ...-..+++++|+|||..++.++... .+++++|......
T Consensus 110 ~~LD~lL~GG~~~g~i~~i~G~~g~GKT~l~~~l~~~~~~~~~~gg~~g~vlyIdtE~~f 169 (342)
T PLN03186 110 RELDKILEGGIETGSITEIYGEFRTGKTQLCHTLCVTCQLPLDQGGGEGKAMYIDTEGTF 169 (342)
T ss_pred HHHHHhhcCCCcCceEEEEECCCCCCccHHHHHHHHHhhcchhhCCCCceEEEEECCCCc
Confidence 3466666654 22345688999999999988776331 2478998866643
No 439
>TIGR03880 KaiC_arch_3 KaiC domain protein, AF_0351 family. This model represents a rather narrowly distributed archaeal protein family in which members have a single copy of the KaiC domain. This stands in contrast to the circadian clock protein KaiC itself, with two copies of the domain. Members are expected to have weak ATPase activity, by homology to the autokinase/autophosphorylase KaiC itself.
Probab=91.35 E-value=0.65 Score=43.78 Aligned_cols=58 Identities=14% Similarity=0.199 Sum_probs=41.3
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.++.++.++ .....++.+++|+|||..++.++.. .+.+++++.... -.++..+.+..+
T Consensus 4 ~LD~~l~gGi~~g~~~li~G~~G~GKt~~~~~~~~~~~~~g~~~~y~s~e~-~~~~l~~~~~~~ 66 (224)
T TIGR03880 4 GLDEMLGGGFPEGHVIVVIGEYGTGKTTFSLQFLYQGLKNGEKAMYISLEE-REERILGYAKSK 66 (224)
T ss_pred hhHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHc
Confidence 566777654 2346678899999999998877643 366888888655 477777776654
No 440
>PF06733 DEAD_2: DEAD_2; InterPro: IPR010614 This represents a conserved region within a number of RAD3-like DNA-binding helicases that are seemingly ubiquitous - members include proteins of eukaryotic, bacterial and archaeal origin. RAD3 is involved in nucleotide excision repair, and forms part of the transcription factor TFIIH in yeast [].; GO: 0003677 DNA binding, 0004003 ATP-dependent DNA helicase activity, 0005524 ATP binding; PDB: 3CRV_A 3CRW_1 2VL7_A 4A15_A 2VSF_A.
Probab=91.30 E-value=0.18 Score=45.57 Aligned_cols=42 Identities=21% Similarity=0.315 Sum_probs=27.6
Q ss_pred cCCCeEEEEchhhhhccCCCchhHHHHHHHHh--cCCccEEEEcCCCCCCch
Q 010367 111 RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIR--NREWGLLLMDEVHVVPAH 160 (512)
Q Consensus 111 ~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~--~~~~~lvIiDEaH~~~~~ 160 (512)
...++|+|++|..|... .....+. ..+-.+|||||||.+...
T Consensus 117 ~~~adivi~~y~yl~~~--------~~~~~~~~~~~~~~ivI~DEAHNL~~~ 160 (174)
T PF06733_consen 117 AKNADIVICNYNYLFDP--------SIRKSLFGIDLKDNIVIFDEAHNLEDA 160 (174)
T ss_dssp GGG-SEEEEETHHHHSH--------HHHHHHCT--CCCEEEEETTGGGCGGG
T ss_pred cccCCEEEeCHHHHhhH--------HHHhhhccccccCcEEEEecccchHHH
Confidence 35688999999988753 1222221 234568999999998753
No 441
>TIGR02858 spore_III_AA stage III sporulation protein AA. Members of this protein are the stage III sporulation protein AA, encoded by one of several genes in the spoIIIA locus. It seems that this protein is found in a species if and only if that species is capable of endospore formation.
Probab=91.29 E-value=0.96 Score=44.01 Aligned_cols=35 Identities=23% Similarity=0.247 Sum_probs=25.5
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+..++.++...+.++.+|+|+|||...-.++..+
T Consensus 101 ~l~~l~~~~~~~~~~i~g~~g~GKttl~~~l~~~~ 135 (270)
T TIGR02858 101 LLPYLVRNNRVLNTLIISPPQCGKTTLLRDLARIL 135 (270)
T ss_pred HHHHHHhCCCeeEEEEEcCCCCCHHHHHHHHhCcc
Confidence 35555555433588999999999998877777554
No 442
>COG1702 PhoH Phosphate starvation-inducible protein PhoH, predicted ATPase [Signal transduction mechanisms]
Probab=91.23 E-value=0.42 Score=47.25 Aligned_cols=142 Identities=14% Similarity=0.168 Sum_probs=74.8
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-C----CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K----KSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
..+-|..-++++..+. -.+-.+|-|+|||+.+.+.+... + +++|..=|-.+ .-. +.+
T Consensus 129 kt~~Q~~y~eai~~~d---i~fGiGpAGTGKTyLava~av~al~~~~v~rIiLtRPaVE--------AGE-------klG 190 (348)
T COG1702 129 KTPGQNMYPEAIEEHD---IVFGIGPAGTGKTYLAVAKAVDALGAGQVRRIILTRPAVE--------AGE-------KLG 190 (348)
T ss_pred cChhHHHHHHHHHhcC---eeeeecccccCChhhhHHhHhhhhhhcccceeeecCcchh--------cCc-------ccC
Confidence 4477999999888775 44556799999999987776443 2 34554445221 111 112
Q ss_pred EEcCCccccccC-CCeEEEEchhhhhcc-----CCCch-hHHHHHHHHhcC--CccEEEEcCCCCCCchHHHHHHHhccc
Q 010367 101 RFTSDSKERFRG-NAGVVVTTYNMVAFG-----GKRSE-ESEKIIEEIRNR--EWGLLLMDEVHVVPAHMFRKVISLTKS 171 (512)
Q Consensus 101 ~~~~~~~~~~~~-~~~Ivv~T~~~l~~~-----~~r~~-~~~~~~~~l~~~--~~~lvIiDEaH~~~~~~~~~~l~~~~~ 171 (512)
.+-|+.++++.. .-.+.=+-|+++-.. ..+.- +.. -+.+++.+ +-.+||+||+|.....+..-.+..+..
T Consensus 191 fLPGdl~eKvdPylRPLyDAl~d~l~~~~~~~~~e~~vIEiA-PlAyMRGRTL~dAfVIlDEaQNtT~~QmKMfLTRiGf 269 (348)
T COG1702 191 FLPGDLREKVDPYLRPLYDALYDILGAERVEALDERGVIEIA-PLAYMRGRTLNDAFVILDEAQNTTVGQMKMFLTRIGF 269 (348)
T ss_pred cCCCchhhhcccccccHHHHHHHHhhHHHHhhhhhcCcEEec-chhhhhcCCCCCeEEEEecccccchhhhceeeeeecC
Confidence 222322222110 000000001111000 00000 000 01122222 235899999999776777777888888
Q ss_pred ceEEEEcccCCCCcc
Q 010367 172 HCKLGLTATLVREDE 186 (512)
Q Consensus 172 ~~~l~LTATp~~~~~ 186 (512)
..+.-.||.+.+-|-
T Consensus 270 ~skmvItGD~tQiDL 284 (348)
T COG1702 270 ESKMVITGDITQIDL 284 (348)
T ss_pred CceEEEEcCcccccC
Confidence 888999999987553
No 443
>TIGR00959 ffh signal recognition particle protein. This model represents Ffh (Fifty-Four Homolog), the protein component that forms the bacterial (and organellar) signal recognition particle together with a 4.5S RNA. Ffh is a GTPase homologous to eukaryotic SRP54 and also to the GTPase FtsY (TIGR00064) that is the receptor for the signal recognition particle.
Probab=91.22 E-value=3.4 Score=43.01 Aligned_cols=32 Identities=25% Similarity=0.179 Sum_probs=23.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~ 75 (512)
.-.++++++|+|||.++..++..+ +.++++++
T Consensus 100 ~vi~~vG~~GsGKTTtaakLA~~l~~~~g~kV~lV~ 135 (428)
T TIGR00959 100 TVILMVGLQGSGKTTTCGKLAYYLKKKQGKKVLLVA 135 (428)
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHhCCCeEEEEe
Confidence 356788999999999987777553 34666665
No 444
>KOG1133 consensus Helicase of the DEAD superfamily [Replication, recombination and repair]
Probab=91.20 E-value=0.36 Score=51.72 Aligned_cols=46 Identities=33% Similarity=0.501 Sum_probs=35.8
Q ss_pred ccCCCCCCCCcHHHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 17 NMELKPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 17 ~~~l~~~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
.+.+.+.++|++.|..-++.++ ..+ .-||+-.|||+|||+.-+..+
T Consensus 7 ~~~F~fPy~PYdIQ~~lM~elyrvLe~G--kIgIfESPTGTGKSLSLiCaa 55 (821)
T KOG1133|consen 7 AIEFPFPYTPYDIQEDLMRELYRVLEEG--KIGIFESPTGTGKSLSLICAA 55 (821)
T ss_pred ccccCCCCCchhHHHHHHHHHHHHHhcC--CeeeeeCCCCCCchHHHHHHH
Confidence 3456678999999998888764 444 389999999999999855444
No 445
>PRK09302 circadian clock protein KaiC; Reviewed
Probab=91.13 E-value=1 Score=48.29 Aligned_cols=61 Identities=26% Similarity=0.371 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 30 QEKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 30 Q~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
-...++.++.++ +....+|.+++|+|||..+..++.. .+.++++++... ..++..+.+..+
T Consensus 258 Gi~~lD~~l~GG~~~g~~~li~G~~G~GKT~l~~~~~~~~~~~g~~~~yis~e~-~~~~i~~~~~~~ 323 (509)
T PRK09302 258 GVPDLDEMLGGGFFRGSIILVSGATGTGKTLLASKFAEAACRRGERCLLFAFEE-SRAQLIRNARSW 323 (509)
T ss_pred CcHHHHHhhcCCCCCCcEEEEEcCCCCCHHHHHHHHHHHHHhCCCcEEEEEecC-CHHHHHHHHHHc
Confidence 345677777654 2345577899999999998877743 467899987654 377777776654
No 446
>cd01130 VirB11-like_ATPase Type IV secretory pathway component VirB11, and related ATPases. The homohexamer, VirB11 is one of eleven Vir proteins, which are required for T-pilus biogenesis and virulence in the transfer of T-DNA from the Ti (tumor-inducing) plasmid of bacterial to plant cells. The pilus is a fibrous cell surface organelle, which mediates adhesion between bacteria during conjugative transfer or between bacteria and host eukaryotic cells during infection. VirB11- related ATPases include the archaeal flagella biosynthesis protein and the pilus assembly proteins CpaF/TadA and TrbB. This alignment contains the C-terminal domain, which is the ATPase.
Probab=91.10 E-value=0.68 Score=42.32 Aligned_cols=42 Identities=19% Similarity=0.095 Sum_probs=33.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
..+-+.|.+.+...+..+ ...++++|+|+|||...-+++..+
T Consensus 8 g~~~~~~~~~l~~~v~~g--~~i~I~G~tGSGKTTll~aL~~~i 49 (186)
T cd01130 8 GTFSPLQAAYLWLAVEAR--KNILISGGTGSGKTTLLNALLAFI 49 (186)
T ss_pred CCCCHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhc
Confidence 456678899999888876 389999999999998876666544
No 447
>COG0467 RAD55 RecA-superfamily ATPases implicated in signal transduction [Signal transduction mechanisms]
Probab=91.03 E-value=0.61 Score=45.13 Aligned_cols=57 Identities=21% Similarity=0.347 Sum_probs=41.2
Q ss_pred HHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
+..++.++ ..+..++.+++|+|||+.++.++... +.+|++|+... ...+..+.+..+
T Consensus 12 lD~~l~GG~p~g~~~lI~G~pGsGKT~f~~qfl~~~~~~ge~vlyvs~~e-~~~~l~~~~~~~ 73 (260)
T COG0467 12 LDEILGGGLPRGSVVLITGPPGTGKTIFALQFLYEGAREGEPVLYVSTEE-SPEELLENARSF 73 (260)
T ss_pred hHHHhcCCCcCCcEEEEEcCCCCcHHHHHHHHHHHHHhcCCcEEEEEecC-CHHHHHHHHHHc
Confidence 55566543 34577889999999999998888543 56899998655 366666666653
No 448
>PF07728 AAA_5: AAA domain (dynein-related subfamily); InterPro: IPR011704 The ATPases Associated to a variety of cellular Activities (AAA) are a family distinguished by a highly conserved module of 230 amino acids []. The highly conserved nature of this module across taxa suggests that it has a key cellular role. Members of the family are involved in diverse cellular functions including gene expression, peroxisome assembly and vesicle mediated transport. Although the role of this ATPase AAA domain is not, as yet, clear, the AAA+ superfamily of proteins to which the AAA ATPases belong has a chaperone-like function in the assembly, operation or disassembly of proteins []. This ATPase domain includes some proteins not detected by the IPR003959 from INTERPRO model.; GO: 0005524 ATP binding, 0016887 ATPase activity; PDB: 3NBX_X 4AKI_A 4AI6_B 4AKH_A 4AKG_A 3QMZ_A 3VKH_A 3VKG_A.
Probab=90.98 E-value=0.31 Score=42.07 Aligned_cols=34 Identities=18% Similarity=0.323 Sum_probs=27.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
+.+|.+|+|+|||..+-.++..+..+++.+.-+.
T Consensus 1 ~vlL~G~~G~GKt~l~~~la~~~~~~~~~i~~~~ 34 (139)
T PF07728_consen 1 PVLLVGPPGTGKTTLARELAALLGRPVIRINCSS 34 (139)
T ss_dssp EEEEEESSSSSHHHHHHHHHHHHTCEEEEEE-TT
T ss_pred CEEEECCCCCCHHHHHHHHHHHhhcceEEEEecc
Confidence 3689999999999999999988887776665433
No 449
>TIGR00767 rho transcription termination factor Rho. Members of this family differ in the specificity of RNA binding.
Probab=90.98 E-value=0.8 Score=46.81 Aligned_cols=26 Identities=35% Similarity=0.483 Sum_probs=20.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+..++|++|+|+|||..+..++..+
T Consensus 167 ~Gq~~~IvG~~g~GKTtL~~~i~~~I 192 (415)
T TIGR00767 167 KGQRGLIVAPPKAGKTVLLQKIAQAI 192 (415)
T ss_pred CCCEEEEECCCCCChhHHHHHHHHhh
Confidence 34589999999999998877766654
No 450
>PTZ00035 Rad51 protein; Provisional
Probab=90.82 E-value=1.2 Score=44.80 Aligned_cols=47 Identities=17% Similarity=0.221 Sum_probs=31.7
Q ss_pred HHHHHHHhCCC--CcceEEEcCCCCcHHHHHHHHHH--h-------cCCCEEEEEcCh
Q 010367 32 KSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAAC--R-------IKKSCLCLATNA 78 (512)
Q Consensus 32 ~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i~--~-------~~~~~Lvl~P~~ 78 (512)
..++.++++|- ..-..|++|.|+|||..+..++. . ..+++++|....
T Consensus 105 ~~LD~lLgGGi~~G~iteI~G~~GsGKT~l~~~l~~~~qlp~~~gg~~g~vvyIdtE~ 162 (337)
T PTZ00035 105 TQLDKLLGGGIETGSITELFGEFRTGKTQLCHTLCVTCQLPIEQGGGEGKVLYIDTEG 162 (337)
T ss_pred HHHHHHhCCCCCCCeEEEEECCCCCchhHHHHHHHHHhccccccCCCCceEEEEEccC
Confidence 45667776652 23456889999999999876653 2 235787877544
No 451
>TIGR02655 circ_KaiC circadian clock protein KaiC. Members of this family are the circadian clock protein KaiC, part of the kaiABC operon that controls circadian rhythm. It may be universal in Cyanobacteria. Each member has two copies of the KaiC domain (Pfam model pfam06745), which is also found in other proteins. KaiC performs autophosphorylation and acts as its own transcriptional repressor.
Probab=90.76 E-value=0.66 Score=49.34 Aligned_cols=60 Identities=13% Similarity=0.194 Sum_probs=45.4
Q ss_pred HHHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 31 EKSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 31 ~~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
...++.++.++ +.+..+|.+|+|+|||..++.++.. .+.++|+++-. +-..++.+....+
T Consensus 7 I~gLD~il~GGlp~g~~~Li~G~pGsGKT~la~qfl~~g~~~~ge~~lyvs~e-E~~~~l~~~~~~~ 72 (484)
T TIGR02655 7 IEGFDDISHGGLPIGRSTLVSGTSGTGKTLFSIQFLYNGIIHFDEPGVFVTFE-ESPQDIIKNARSF 72 (484)
T ss_pred chhHHHhcCCCCCCCeEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEEEEe-cCHHHHHHHHHHc
Confidence 35677888765 4567889999999999999887653 25689999864 4577777777765
No 452
>KOG1051 consensus Chaperone HSP104 and related ATP-dependent Clp proteases [Posttranslational modification, protein turnover, chaperones]
Probab=90.74 E-value=1.4 Score=49.50 Aligned_cols=106 Identities=10% Similarity=0.116 Sum_probs=64.7
Q ss_pred HHHHHHHHHHHh--------CC---CCcceEEEcCCCCcHHHHHHHHHHhcCC--CEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 28 PYQEKSLSKMFG--------NG---RARSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 28 ~yQ~~al~~~~~--------~~---~~~~~il~~~tG~GKTl~~i~~i~~~~~--~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
++|.+|+..+-. .. ..-..++.+|+|.|||-++.+++..+.+ ..+|-+..++..+ ..+..+.
T Consensus 565 ~gQ~eAv~aIa~AI~~sr~gl~~~~~~awflflGpdgvGKt~lAkaLA~~~Fgse~~~IriDmse~~e-----vskligs 639 (898)
T KOG1051|consen 565 IGQDEAVAAIAAAIRRSRAGLKDPNPDAWFLFLGPDGVGKTELAKALAEYVFGSEENFIRLDMSEFQE-----VSKLIGS 639 (898)
T ss_pred cchHHHHHHHHHHHHhhhcccCCCCCCeEEEEECCCchhHHHHHHHHHHHHcCCccceEEechhhhhh-----hhhccCC
Confidence 469998887521 11 1235788999999999999999987753 5555555554222 4443333
Q ss_pred CCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHh
Q 010367 95 QDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISL 168 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~ 168 (512)
|+.-++ |+. ...+.+.++.+.+.+|.|||+...-...+..++..
T Consensus 640 p~gyvG--------------------~e~----------gg~LteavrrrP~sVVLfdeIEkAh~~v~n~llq~ 683 (898)
T KOG1051|consen 640 PPGYVG--------------------KEE----------GGQLTEAVKRRPYSVVLFEEIEKAHPDVLNILLQL 683 (898)
T ss_pred Cccccc--------------------chh----------HHHHHHHHhcCCceEEEEechhhcCHHHHHHHHHH
Confidence 321111 010 12334566668889999999988776655544443
No 453
>PRK05986 cob(I)alamin adenolsyltransferase/cobinamide ATP-dependent adenolsyltransferase; Validated
Probab=90.71 E-value=0.69 Score=42.28 Aligned_cols=126 Identities=13% Similarity=0.030 Sum_probs=65.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEch
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~ 121 (512)
..++..++|-|||..++..+.+. +.+|+++-=.+.-.. ..|...+..++ .+..+..+..-.+.... ..
T Consensus 24 ~v~v~~g~GkGKtt~a~g~a~ra~g~G~~V~ivQFlKg~~~--~GE~~~l~~l~--~v~~~~~g~~~~~~~~~-----~~ 94 (191)
T PRK05986 24 LLIVHTGNGKGKSTAAFGMALRAVGHGKKVGVVQFIKGAWS--TGERNLLEFGG--GVEFHVMGTGFTWETQD-----RE 94 (191)
T ss_pred eEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCCCc--cCHHHHHhcCC--CcEEEECCCCCcccCCC-----cH
Confidence 78888999999999998887554 568888865443111 12332221122 23322222110000000 00
Q ss_pred hhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------HHHHHHHhcccceEEEEcccCC
Q 010367 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFRKVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 122 ~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~~~~~l~~~~~~~~l~LTATp~ 182 (512)
+..... + .......+.+....+++||+||.=...+- ....++..-+...-+.|||--.
T Consensus 95 e~~~~~-~--~~~~~a~~~l~~~~ydlvVLDEi~~Al~~gli~~eevi~~L~~rp~~~evVlTGR~~ 158 (191)
T PRK05986 95 RDIAAA-R--EGWEEAKRMLADESYDLVVLDELTYALKYGYLDVEEVLEALNARPGMQHVVITGRGA 158 (191)
T ss_pred HHHHHH-H--HHHHHHHHHHhCCCCCEEEEehhhHHHHCCCccHHHHHHHHHcCCCCCEEEEECCCC
Confidence 000000 0 01222334455678999999998765542 3344444444445688888744
No 454
>PRK06995 flhF flagellar biosynthesis regulator FlhF; Validated
Probab=90.69 E-value=3.2 Score=43.75 Aligned_cols=23 Identities=26% Similarity=0.309 Sum_probs=18.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..+++|+|+|||.+...++..+
T Consensus 258 Vi~LvGpnGvGKTTTiaKLA~~~ 280 (484)
T PRK06995 258 VFALMGPTGVGKTTTTAKLAARC 280 (484)
T ss_pred EEEEECCCCccHHHHHHHHHHHH
Confidence 46688999999999987777543
No 455
>PF00154 RecA: recA bacterial DNA recombination protein; InterPro: IPR013765 The recA gene product is a multifunctional enzyme that plays a role in homologous recombination, DNA repair and induction of the SOS response []. In homologous recombination, the protein functions as a DNA-dependent ATPase, promoting synapsis, heteroduplex formation and strand exchange between homologous DNAs []. RecA also acts as a protease cofactor that promotes autodigestion of the lexA product and phage repressors. The proteolytic inactivation of the lexA repressor by an activated form of recA may cause a derepression of the 20 or so genes involved in the SOS response, which regulates DNA repair, induced mutagenesis, delayed cell division and prophage induction in response to DNA damage []. RecA is a protein of about 350 amino-acid residues. Its sequence is very well conserved [, , ] among eubacterial species. It is also found in the chloroplast of plants []. RecA-like proteins are found in archaea and diverse eukaryotic organisms, like fission yeast, mouse or human. In the filament visualised by X-ray crystallography, beta-strand 3, the loop C-terminal to beta-strand 2, and alpha-helix D of the core domain form one surface that packs against alpha-helix A and beta-strand 0 (the N-terminal domain) of an adjacent monomer during polymerisation []. The core ATP-binding site domain is well conserved, with 14 invariant residues. It contains the nucleotide binding loop between beta-strand 1 and alpha-helix C. The Escherichia coli sequence GPESSGKT matches the consensus sequence of amino acids (G/A)XXXXGK(T/S) for the Walker A box (also referred to as the P-loop) found in a number of nucleoside triphosphate (NTP)-binding proteins. Another nucleotide binding motif, the Walker B box is found at beta-strand 4 in the RecA structure. The Walker B box is characterised by four hydrophobic amino acids followed by an acidic residue (usually aspartate). Nucleotide specificity and additional ATP binding interactions are contributed by the amino acid residues at beta-strand 2 and the loop C-terminal to that strand, all of which are greater than 90% conserved among bacterial RecA proteins.; GO: 0003697 single-stranded DNA binding, 0005524 ATP binding, 0006281 DNA repair; PDB: 2IN0_A 1MO3_A 3IFJ_A 2IN8_A 2IMZ_B 1G18_A 1MO4_A 3IGD_A 2L8L_A 2IN9_A ....
Probab=90.67 E-value=1 Score=44.80 Aligned_cols=58 Identities=19% Similarity=0.254 Sum_probs=37.0
Q ss_pred HHHHHHHHh-CCCCcc--eEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHH
Q 010367 31 EKSLSKMFG-NGRARS--GIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 31 ~~al~~~~~-~~~~~~--~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
..+|+..+. ++-++. .-|.+|.|+|||..++.++.. .++.|++|-|...+-..|.+.+
T Consensus 38 ~~~LD~aLg~GG~p~G~ivEi~G~~ssGKttLaL~~ia~~q~~g~~~a~ID~e~~ld~~~a~~l 101 (322)
T PF00154_consen 38 SPALDYALGIGGLPRGRIVEIYGPESSGKTTLALHAIAEAQKQGGICAFIDAEHALDPEYAESL 101 (322)
T ss_dssp -HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTT-EEEEEESSS---HHHHHHT
T ss_pred CcccchhhccCccccCceEEEeCCCCCchhhhHHHHHHhhhcccceeEEecCcccchhhHHHhc
Confidence 345666676 332223 347899999999998877754 3578899988888776655543
No 456
>PF05707 Zot: Zonular occludens toxin (Zot); InterPro: IPR008900 This entry consists of bacterial and viral proteins which are very similar to the Zonular occludens toxin (Zot). Zot is elaborated by bacteriophage present in toxigenic strains of Vibrio cholerae. Zot is a single polypeptide chain of 44.8 kDa, with the ability to reversibly alter intestinal epithelial tight junctions, allowing the passage of macromolecules through mucosal barriers.; PDB: 2R2A_B.
Probab=90.55 E-value=0.65 Score=42.75 Aligned_cols=18 Identities=39% Similarity=0.320 Sum_probs=13.6
Q ss_pred eEEEcCCCCcHHHHHHHH
Q 010367 46 GIIVLPCGAGKSLVGVSA 63 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~ 63 (512)
.++++.+|+|||+.++..
T Consensus 3 ~~~~G~pGsGKS~~av~~ 20 (193)
T PF05707_consen 3 YLITGKPGSGKSYYAVSY 20 (193)
T ss_dssp EEEE--TTSSHHHHHHHH
T ss_pred EEEEcCCCCcHhHHHHHH
Confidence 378899999999988776
No 457
>cd00561 CobA_CobO_BtuR ATP:corrinoid adenosyltransferase BtuR/CobO/CobP. This family consists of the BtuR, CobO, CobP proteins all of which are Cob(I)alamin (vitamin B12) adenosyltransferase, which is involved in cobalamin (vitamin B12) biosynthesis. This enzyme is a homodimer, which catalyzes the adenosylation reaction: ATP + cob(I)alamin + H2O <= phosphate + diphosphate + adenosylcobalamin.
Probab=90.38 E-value=0.85 Score=40.50 Aligned_cols=126 Identities=14% Similarity=0.043 Sum_probs=62.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEch
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~ 121 (512)
-..+..++|.|||..++..+.+. +.+|+++-=.+.- ....|...+-.++ .+..+..+....+.... ..
T Consensus 4 ~i~vy~g~G~Gkt~~a~g~~~ra~~~g~~v~~vQFlKg~--~~~gE~~~l~~l~--~v~~~~~g~~~~~~~~~-----~~ 74 (159)
T cd00561 4 LIQVYTGNGKGKTTAALGLALRALGHGYRVGVVQFLKGG--WKYGELKALERLP--NIEIHRMGRGFFWTTEN-----DE 74 (159)
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEEeCCC--CccCHHHHHHhCC--CcEEEECCCCCccCCCC-----hH
Confidence 34566788999999988777543 5688885433321 1122333222233 23333332211110000 00
Q ss_pred hhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc------hHHHHHHHhcccceEEEEcccCC
Q 010367 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------HMFRKVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 122 ~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~------~~~~~~l~~~~~~~~l~LTATp~ 182 (512)
+..... + .........+....++++|+||.=.... .....++..-+...-+.|||--.
T Consensus 75 ~~~~~a-~--~~~~~a~~~~~~~~~dLlVLDEi~~a~~~gli~~~~v~~ll~~rp~~~evIlTGr~~ 138 (159)
T cd00561 75 EDIAAA-A--EGWAFAKEAIASGEYDLVILDEINYALGYGLLDVEEVVDLLKAKPEDLELVLTGRNA 138 (159)
T ss_pred HHHHHH-H--HHHHHHHHHHhcCCCCEEEEechHhHhhCCCCCHHHHHHHHHcCCCCCEEEEECCCC
Confidence 111000 0 0111223334457899999999876632 24444555545555678887653
No 458
>PRK14723 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=90.30 E-value=2 Score=47.67 Aligned_cols=23 Identities=30% Similarity=0.346 Sum_probs=18.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..+++|+|+|||.+...++..+
T Consensus 187 Vi~lVGpnGvGKTTTiaKLA~~~ 209 (767)
T PRK14723 187 VLALVGPTGVGKTTTTAKLAARC 209 (767)
T ss_pred EEEEECCCCCcHHHHHHHHHhhH
Confidence 45788999999999877776433
No 459
>KOG0733 consensus Nuclear AAA ATPase (VCP subfamily) [Posttranslational modification, protein turnover, chaperones]
Probab=90.28 E-value=3.2 Score=44.35 Aligned_cols=44 Identities=14% Similarity=0.252 Sum_probs=31.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHH
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQ 87 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~ 87 (512)
+.+.++++|+|+|||+.|=+++.+.+-.++=|= --+|..-|..|
T Consensus 545 PsGvLL~GPPGCGKTLlAKAVANEag~NFisVK-GPELlNkYVGE 588 (802)
T KOG0733|consen 545 PSGVLLCGPPGCGKTLLAKAVANEAGANFISVK-GPELLNKYVGE 588 (802)
T ss_pred CCceEEeCCCCccHHHHHHHHhhhccCceEeec-CHHHHHHHhhh
Confidence 346789999999999999999988776655443 34555555443
No 460
>TIGR03881 KaiC_arch_4 KaiC domain protein, PAE1156 family. Members of this protein family are archaeal single-domain KaiC_related proteins, homologous to the Cyanobacterial circadian clock cycle protein KaiC, an autokinase/autophosphorylase that has two copies of the domain.
Probab=90.20 E-value=0.98 Score=42.69 Aligned_cols=58 Identities=21% Similarity=0.206 Sum_probs=38.1
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHH
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
..++.++.++ +....+|.+++|+|||..+..++. ..+.+++++.... ...+..+..+.
T Consensus 7 ~~LD~~l~GGi~~G~~~~i~G~~G~GKT~l~~~~~~~~~~~g~~~~~is~e~-~~~~i~~~~~~ 69 (229)
T TIGR03881 7 EGLDKLLEGGIPRGFFVAVTGEPGTGKTIFCLHFAYKGLRDGDPVIYVTTEE-SRESIIRQAAQ 69 (229)
T ss_pred hhHHHhhcCCCcCCeEEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEEccC-CHHHHHHHHHH
Confidence 4677777544 335678889999999998876553 3356788887533 35555555444
No 461
>KOG2543 consensus Origin recognition complex, subunit 5 [Replication, recombination and repair]
Probab=90.18 E-value=0.66 Score=46.51 Aligned_cols=71 Identities=20% Similarity=0.196 Sum_probs=56.5
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCC--Ccc-eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 20 LKPHAQPRPYQEKSLSKMFGNGR--ARS-GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~--~~~-~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
+.+.+.-|.+|.+.+..++.+.. -.+ .+|.+..|+|||.+.-.+....+.+.+++++.- +..|+--+.+.+
T Consensus 4 l~~~v~~Re~qi~~L~~Llg~~~~~~PS~~~iyG~sgTGKT~~~r~~l~~~n~~~vw~n~~e--cft~~~lle~IL 77 (438)
T KOG2543|consen 4 LEPNVPCRESQIRRLKSLLGNNSCTIPSIVHIYGHSGTGKTYLVRQLLRKLNLENVWLNCVE--CFTYAILLEKIL 77 (438)
T ss_pred cccCccchHHHHHHHHHHhCCCCcccceeEEEeccCCCchhHHHHHHHhhcCCcceeeehHH--hccHHHHHHHHH
Confidence 56778899999999999887752 112 288899999999999999999999999999844 566776666653
No 462
>PRK09519 recA DNA recombination protein RecA; Reviewed
Probab=90.15 E-value=1.6 Score=48.59 Aligned_cols=52 Identities=21% Similarity=0.215 Sum_probs=37.7
Q ss_pred HHHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHH
Q 010367 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVD 82 (512)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~ 82 (512)
...|+.++. ++ +..-..|.+|+|+|||..++.++. ..+++++++-+...+..
T Consensus 45 i~~LD~lLg~GGip~GsiteI~G~~GsGKTtLal~~~~~a~~~G~~v~yId~E~t~~~ 102 (790)
T PRK09519 45 SIALDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGVAAFIDAEHALDP 102 (790)
T ss_pred cHHHHHhhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEECCccchhH
Confidence 456777887 44 335667889999999999877664 44678888887666553
No 463
>PF13207 AAA_17: AAA domain; PDB: 3AKC_A 3AKE_A 3AKD_A 2QL6_G 2QT1_A 2QSZ_A 2QSY_A 2QT0_A 2QG6_A 2P0E_A ....
Probab=90.02 E-value=0.41 Score=40.02 Aligned_cols=26 Identities=35% Similarity=0.303 Sum_probs=21.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
.+|.+++|+|||.++-.++..++-++
T Consensus 2 I~I~G~~gsGKST~a~~La~~~~~~~ 27 (121)
T PF13207_consen 2 IIISGPPGSGKSTLAKELAERLGFPV 27 (121)
T ss_dssp EEEEESTTSSHHHHHHHHHHHHTCEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHCCeE
Confidence 47899999999999999998876443
No 464
>cd01129 PulE-GspE PulE/GspE The type II secretory pathway is the main terminal branch of the general secretory pathway (GSP). It is responsible for the export the majority of Gram-negative bacterial exoenzymes and toxins. PulE is a cytoplasmic protein of the GSP, which contains an ATP binding site and a tetracysteine motif. This subgroup also includes PillB and HofB.
Probab=89.82 E-value=0.58 Score=45.43 Aligned_cols=42 Identities=19% Similarity=0.259 Sum_probs=32.2
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+.+.|.+.+..++.... ...+|++|||+|||.+.-+++..+.
T Consensus 64 ~~~~~~~~l~~~~~~~~-GlilisG~tGSGKTT~l~all~~i~ 105 (264)
T cd01129 64 LKPENLEIFRKLLEKPH-GIILVTGPTGSGKTTTLYSALSELN 105 (264)
T ss_pred CCHHHHHHHHHHHhcCC-CEEEEECCCCCcHHHHHHHHHhhhC
Confidence 56778888888776431 2578999999999998877776653
No 465
>cd01394 radB RadB. The archaeal protein radB shares similarity radA, the archaeal functional homologue to the bacterial RecA. The precise function of radB is unclear.
Probab=89.80 E-value=1.2 Score=41.75 Aligned_cols=46 Identities=24% Similarity=0.392 Sum_probs=34.1
Q ss_pred HHHHHHHhCCC--CcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcC
Q 010367 32 KSLSKMFGNGR--ARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATN 77 (512)
Q Consensus 32 ~al~~~~~~~~--~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~ 77 (512)
.+++.++.++- ..-..|.+++|+|||..++.++... +.+++++.-.
T Consensus 6 ~~LD~~l~GGi~~g~i~~i~G~~GsGKT~l~~~~a~~~~~~g~~v~yi~~e 56 (218)
T cd01394 6 KGLDELLGGGVERGTVTQVYGPPGTGKTNIAIQLAVETAGQGKKVAYIDTE 56 (218)
T ss_pred hHHHHHhcCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEECC
Confidence 46777886542 2347788999999999998888654 4688888643
No 466
>PLN02165 adenylate isopentenyltransferase
Probab=89.77 E-value=0.33 Score=48.33 Aligned_cols=31 Identities=29% Similarity=0.380 Sum_probs=24.7
Q ss_pred hCCCCcceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 39 GNGRARSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 39 ~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
.+....-.+|++|||+|||..+..++..++.
T Consensus 39 ~~~~g~iivIiGPTGSGKStLA~~LA~~l~~ 69 (334)
T PLN02165 39 QNCKDKVVVIMGATGSGKSRLSVDLATRFPS 69 (334)
T ss_pred cCCCCCEEEEECCCCCcHHHHHHHHHHHcCC
Confidence 3433446889999999999999998888764
No 467
>cd03115 SRP The signal recognition particle (SRP) mediates the transport to or across the plasma membrane in bacteria and the endoplasmic reticulum in eukaryotes. SRP recognizes N-terminal sighnal sequences of newly synthesized polypeptides at the ribosome. The SRP-polypeptide complex is then targeted to the membrane by an interaction between SRP and its cognated receptor (SR). In mammals, SRP consists of six protein subunits and a 7SL RNA. One of these subunits is a 54 kd protein (SRP54), which is a GTP-binding protein that interacts with the signal sequence when it emerges from the ribosome. SRP54 is a multidomain protein that consists of an N-terminal domain, followed by a central G (GTPase) domain and a C-terminal M domain.
Probab=89.72 E-value=2.1 Score=38.39 Aligned_cols=30 Identities=27% Similarity=0.251 Sum_probs=22.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.++.+++|+|||.++..++..+ +.+++++.
T Consensus 3 ~~~~G~~G~GKTt~~~~la~~~~~~g~~v~~i~ 35 (173)
T cd03115 3 ILLVGLQGVGKTTTAAKLALYLKKKGKKVLLVA 35 (173)
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 5788999999999988877654 44565554
No 468
>PRK10733 hflB ATP-dependent metalloprotease; Reviewed
Probab=89.60 E-value=0.88 Score=50.15 Aligned_cols=34 Identities=24% Similarity=0.371 Sum_probs=28.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.++.++++|+|+|||..+-.++...+.+++.+.+
T Consensus 185 ~~gill~G~~G~GKt~~~~~~a~~~~~~f~~is~ 218 (644)
T PRK10733 185 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTISG 218 (644)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHHcCCCEEEEeh
Confidence 3578899999999999999999888888776654
No 469
>TIGR00708 cobA cob(I)alamin adenosyltransferase. Alternate name: corrinoid adenosyltransferase.
Probab=89.59 E-value=4 Score=36.74 Aligned_cols=122 Identities=15% Similarity=0.070 Sum_probs=61.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHH-HHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQW-AFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw-~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
-..+..++|-|||..++..+.+. +.+|+|+-=.+.- | ..+...+-.. .+.....+.. ....+
T Consensus 7 li~v~~g~GkGKtt~a~g~a~ra~~~g~~v~ivQFlKg~---~~~GE~~~l~~~---~~~~~~~g~g--------~~~~~ 72 (173)
T TIGR00708 7 IIIVHTGNGKGKTTAAFGMALRALGHGKKVGVIQFIKGA---WPNGERAAFEPH---GVEFQVMGTG--------FTWET 72 (173)
T ss_pred EEEEECCCCCChHHHHHHHHHHHHHCCCeEEEEEEecCC---cccChHHHHHhc---CcEEEECCCC--------CeecC
Confidence 45667889999999998887554 5678777433321 1 1122111111 1222221111 00001
Q ss_pred --hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC------chHHHHHHHhcccceEEEEcccCC
Q 010367 121 --YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP------AHMFRKVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 121 --~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~------~~~~~~~l~~~~~~~~l~LTATp~ 182 (512)
.+.-....+ .......+.+....+++||+||+=... ......++..-+...-+.|||.-.
T Consensus 73 ~~~~~~~~~~~--~~~~~a~~~l~~~~~DlvVLDEi~~A~~~gli~~~~v~~lL~~rp~~~evVlTGR~~ 140 (173)
T TIGR00708 73 QNREADTAIAK--AAWQHAKEMLADPELDLVLLDELTYALKYGYLDVEEVVEALQERPGHQHVIITGRGC 140 (173)
T ss_pred CCcHHHHHHHH--HHHHHHHHHHhcCCCCEEEehhhHHHHHCCCcCHHHHHHHHHhCCCCCEEEEECCCC
Confidence 000000000 011223344555789999999997443 334455565555556788888754
No 470
>COG0324 MiaA tRNA delta(2)-isopentenylpyrophosphate transferase [Translation, ribosomal structure and biogenesis]
Probab=89.51 E-value=0.38 Score=47.32 Aligned_cols=28 Identities=21% Similarity=0.324 Sum_probs=24.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (512)
-.+|++||++|||-.++.++.+.+..++
T Consensus 5 ~i~I~GPTAsGKT~lai~LAk~~~~eII 32 (308)
T COG0324 5 LIVIAGPTASGKTALAIALAKRLGGEII 32 (308)
T ss_pred EEEEECCCCcCHHHHHHHHHHHcCCcEE
Confidence 4689999999999999999999987543
No 471
>PF00158 Sigma54_activat: Sigma-54 interaction domain; InterPro: IPR002078 Some bacterial regulatory proteins activate the expression of genes from promoters recognised by core RNA polymerase associated with the alternative sigma-54 factor. These have a conserved domain of about 230 residues involved in the ATP-dependent [, ] interaction with sigma-54. About half of the proteins in which this domain is found (algB, dcdT, flbD, hoxA, hupR1, hydG, ntrC, pgtA and pilR) belong to signal transduction two-component systems [] and possess a domain that can be phosphorylated by a sensor-kinase protein in their N-terminal section. Almost all of these proteins possess a helix-turn-helix DNA-binding domain in their C-terminal section. The domain which interacts with the sigma-54 factor has an ATPase activity. This may be required to promote a conformational change necessary for the interaction []. The domain contains an atypical ATP-binding motif A (P-loop) as well as a form of motif B. The two ATP-binding motifs are located in the N-terminal section of the domain.; GO: 0005524 ATP binding, 0008134 transcription factor binding, 0006355 regulation of transcription, DNA-dependent, 0005622 intracellular; PDB: 1NY6_K 3M0E_G 1NY5_A 1OJL_A 3DZD_B 2C9C_A 2C98_A 2C96_A 2BJV_A 2C99_A ....
Probab=89.42 E-value=1.7 Score=39.10 Aligned_cols=93 Identities=14% Similarity=0.204 Sum_probs=52.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
.+.+|.+++|+||+++|-++-... .+|++.|-.. .+-.++.+ ..++|... ..+.+.... .
T Consensus 23 ~pVlI~GE~GtGK~~lA~~IH~~s~r~~~pfi~vnc~-~~~~~~~e--~~LFG~~~---~~~~~~~~~-----------~ 85 (168)
T PF00158_consen 23 LPVLITGETGTGKELLARAIHNNSPRKNGPFISVNCA-ALPEELLE--SELFGHEK---GAFTGARSD-----------K 85 (168)
T ss_dssp S-EEEECSTTSSHHHHHHHHHHCSTTTTS-EEEEETT-TS-HHHHH--HHHHEBCS---SSSTTTSSE-----------B
T ss_pred CCEEEEcCCCCcHHHHHHHHHHhhhcccCCeEEEehh-hhhcchhh--hhhhcccc---ccccccccc-----------c
Confidence 589999999999999987666543 2466666554 34444321 12333211 011111111 1
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~ 170 (512)
.+.| ...+-+.+++||++.++...-.+++..+.
T Consensus 86 ~G~l-----------------~~A~~GtL~Ld~I~~L~~~~Q~~Ll~~l~ 118 (168)
T PF00158_consen 86 KGLL-----------------EQANGGTLFLDEIEDLPPELQAKLLRVLE 118 (168)
T ss_dssp EHHH-----------------HHTTTSEEEEETGGGS-HHHHHHHHHHHH
T ss_pred CCce-----------------eeccceEEeecchhhhHHHHHHHHHHHHh
Confidence 1222 22566899999999999887766666654
No 472
>PRK10917 ATP-dependent DNA helicase RecG; Provisional
Probab=89.42 E-value=1.6 Score=48.63 Aligned_cols=75 Identities=15% Similarity=0.243 Sum_probs=60.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHh---------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC-CCcccccCccccE
Q 010367 266 QRGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-VGDNSIDIPEANV 335 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~-~~~~GlDlp~~~~ 335 (512)
..|.+++|.+++..-+...++.+ .+..++|+++..+|.++++....+ +.+|+|+|. .+...+.+.++.+
T Consensus 308 ~~g~q~lilaPT~~LA~Q~~~~l~~l~~~~~i~v~ll~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~v~~~~l~l 386 (681)
T PRK10917 308 EAGYQAALMAPTEILAEQHYENLKKLLEPLGIRVALLTGSLKGKERREILEAIASG-EADIVIGTHALIQDDVEFHNLGL 386 (681)
T ss_pred HcCCeEEEEeccHHHHHHHHHHHHHHHhhcCcEEEEEcCCCCHHHHHHHHHHHhCC-CCCEEEchHHHhcccchhcccce
Confidence 35789999999998877766654 235689999999999999999997 899999984 4556778888888
Q ss_pred EEEecC
Q 010367 336 IIQISS 341 (512)
Q Consensus 336 vI~~~~ 341 (512)
||+-..
T Consensus 387 vVIDE~ 392 (681)
T PRK10917 387 VIIDEQ 392 (681)
T ss_pred EEEech
Confidence 887433
No 473
>TIGR00595 priA primosomal protein N'. All proteins in this family for which functions are known are components of the primosome which is involved in replication, repair, and recombination.This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=89.34 E-value=2 Score=45.87 Aligned_cols=88 Identities=10% Similarity=0.099 Sum_probs=61.9
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh----C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~ 323 (512)
.+|-.+...++...- ..|.++||.++.+.-+..+++.| + +.++||+++..+|.+...+...+ +.+|+|+|..
T Consensus 8 sGKT~v~l~~i~~~l-~~g~~vLvlvP~i~L~~Q~~~~l~~~f~~~v~vlhs~~~~~er~~~~~~~~~g-~~~IVVGTrs 85 (505)
T TIGR00595 8 SGKTEVYLQAIEKVL-ALGKSVLVLVPEIALTPQMIQRFKYRFGSQVAVLHSGLSDSEKLQAWRKVKNG-EILVVIGTRS 85 (505)
T ss_pred CCHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCcEEEEECCCCHHHHHHHHHHHHcC-CCCEEECChH
Confidence 345555444443333 45789999999998877776666 2 45799999999999998888887 7899999853
Q ss_pred CcccccCccccEEEEec
Q 010367 324 GDNSIDIPEANVIIQIS 340 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~~~ 340 (512)
.-. ..++++..||+-.
T Consensus 86 alf-~p~~~l~lIIVDE 101 (505)
T TIGR00595 86 ALF-LPFKNLGLIIVDE 101 (505)
T ss_pred HHc-CcccCCCEEEEEC
Confidence 221 3456667777643
No 474
>KOG0731 consensus AAA+-type ATPase containing the peptidase M41 domain [Posttranslational modification, protein turnover, chaperones]
Probab=89.32 E-value=0.35 Score=53.00 Aligned_cols=35 Identities=20% Similarity=0.296 Sum_probs=30.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
-++.++|++|+|+|||+.|-+.+.+.+-|++-++=
T Consensus 343 iPkGvLL~GPPGTGKTLLAKAiAGEAgVPF~svSG 377 (774)
T KOG0731|consen 343 IPKGVLLVGPPGTGKTLLAKAIAGEAGVPFFSVSG 377 (774)
T ss_pred CcCceEEECCCCCcHHHHHHHHhcccCCceeeech
Confidence 35789999999999999999999999988887653
No 475
>PF11496 HDA2-3: Class II histone deacetylase complex subunits 2 and 3; InterPro: IPR021006 This entry contains the class II histone deacetylase complex subunits HDA2 and HDA3 is found in fungi. The member from Schizosaccharomyces pombe (Fission yeast) is referred to as Ccq1 in Q10432 from SWISSPROT. These proteins associate with HDA1 to generate the activity of the HDA1 histone deacetylase complex. HDA1 interacts with itself and with the HDA2-HDA3 subcomplex to form a probable tetramer and these interactions are necessary for catalytic activity. The HDA1 histone deacetylase complex is responsible for the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events. HDA2 and HDA3 have a conserved coiled-coil domain towards their C terminus []. ; PDB: 3HGQ_C 3HGT_B.
Probab=89.27 E-value=1.6 Score=42.99 Aligned_cols=130 Identities=15% Similarity=0.059 Sum_probs=67.7
Q ss_pred hcCcchHHHHHHHHHHh-----hhcCCCeEEEEecCHHHHHHHHHHh-CCC----ceeCCCCHHHHHHHH----------
Q 010367 247 VMNPNKFRACEFLIRFH-----EQQRGDKIIVFADNLFALTEYAMKL-RKP----MIYGATSHVERTKIL---------- 306 (512)
Q Consensus 247 ~~~~~k~~~l~~ll~~~-----~~~~g~k~iVf~~~~~~~~~l~~~L-~~~----~i~g~~~~~eR~~il---------- 306 (512)
...++||..+..|+... . ..+.+++|.++....++.+..+| +.. .+.|.....+....-
T Consensus 92 ~~tS~KF~~L~~Li~~li~~~~~-~~~~~ilIv~~~~k~ldllE~~llGk~~~~kr~sg~~l~~~~~~~~~~~~~~~~~~ 170 (297)
T PF11496_consen 92 AYTSGKFQFLNDLIDSLIDRDRR-EYPLHILIVSRSGKELDLLEGLLLGKKLNYKRYSGESLYDEKHKVPKNGNTESNSS 170 (297)
T ss_dssp HHT-HHHHHHHHHHHHH-----T-TSSEEEEEEE-STHHHHHHHHHHTTSSSEEEESSS--S--S---S-----------
T ss_pred HHcCchHHHHHHHHHHHHhhhcc-cCCceEEEEecCccHHHHHHHHHccCCeeEEecCCCCCcCccccCCcccccccccc
Confidence 34678999999999887 5 66789999999999999999888 322 233433222221111
Q ss_pred --HHhhCC--CCccEEEEeCCCccc-----ccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEE
Q 010367 307 --QAFKCS--RDLNTIFLSKVGDNS-----IDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAF 377 (512)
Q Consensus 307 --~~F~~~--~~~~vlv~t~~~~~G-----lDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~ 377 (512)
...... ..+.+.++|..+... ++-..++.||.+|+........+|.+=..+|.+ ..+-
T Consensus 171 ~~~~~~~~~~~~~~i~L~ts~~l~~~~~~~~~~~~~d~IIsfD~~~d~~~p~i~~lR~~~~~~-------------~~~P 237 (297)
T PF11496_consen 171 NNSKKKDKGSLSVWIHLITSDQLYNNKPPLLSNYNFDLIISFDPSFDTSLPSIEQLRTQNRRN-------------RLCP 237 (297)
T ss_dssp -----------SEEEEEEESS---TTTS--TT-S-EEEEEE-SST--TTSHHHHHHH--------------------S--
T ss_pred cccccccccccceEEEEecCccccccCCCccccCCcCEEEEecCCCCCCChHHHHHHhhcCCC-------------CCCc
Confidence 111111 133444444333222 233366899999887644445666665555432 2478
Q ss_pred EEEEEeCCcHhhH
Q 010367 378 FYSLVSTDTQEMF 390 (512)
Q Consensus 378 ~y~lv~~~t~e~~ 390 (512)
++.+|..+|+|..
T Consensus 238 iirLv~~nSiEHi 250 (297)
T PF11496_consen 238 IIRLVPSNSIEHI 250 (297)
T ss_dssp EEEEEETTSHHHH
T ss_pred EEEEeeCCCHHHH
Confidence 9999999999983
No 476
>PF04364 DNA_pol3_chi: DNA polymerase III chi subunit, HolC; InterPro: IPR007459 The DNA polymerase III holoenzyme (2.7.7.7 from EC) is the polymerase responsible for the replication of the Escherichia coli chromosome. The holoenzyme is composed of the DNA polymerase III core, the sliding clamp, and the DnaX clamp loading complex. The DnaX complex contains either the tau or gamma product of gene dnax, complexed to delta.delta and to chi psi. Chi forms a 1:1 heterodimer with psi. The chi psi complex functions by increasing the affinity of tau and gamma for delta.delta allowing a functional clamp-loading complex to form at physiological subunit concentrations. Psi is responsible for the interaction with DnaX (gamma/tau), but psi is insoluble unless it is in a complex with chi [].; GO: 0003677 DNA binding, 0003887 DNA-directed DNA polymerase activity, 0006260 DNA replication; PDB: 3SXU_A 1EM8_C.
Probab=89.26 E-value=6.1 Score=34.14 Aligned_cols=115 Identities=16% Similarity=0.180 Sum_probs=63.6
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC----CCc-eeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccc
Q 010367 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPM-IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (512)
Q Consensus 254 ~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~----~~~-i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~Gl 328 (512)
..+-.|++..- ..|.+++|+|++...++.+-+.|- -.+ =|+-.... .. ..-.|++++..-. -
T Consensus 16 ~~~c~L~~k~~-~~g~rv~V~~~d~~~a~~lD~~LW~~~~~sFlPH~~~~~~---------~~-~~~PV~i~~~~~~--~ 82 (137)
T PF04364_consen 16 RFACRLAEKAY-RQGQRVLVLCPDEEQAEALDELLWTFSPDSFLPHGLAGEP---------PA-ARQPVLITWDQEA--N 82 (137)
T ss_dssp HHHHHHHHHHH-HTT--EEEE-SSHHHHHHHHHHTTTSSTT----EEETT-S---------ST-T--SEEEE-TTS----
T ss_pred HHHHHHHHHHH-HcCCeEEEEeCCHHHHHHHHHHHHCCCCCCCCCCcccCCC---------CC-CCCeEEEecCccc--C
Confidence 45556665555 679999999999999999999992 222 23322110 00 1346888764322 2
Q ss_pred cCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHHhcCCce
Q 010367 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSF 406 (512)
Q Consensus 329 Dlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~ 406 (512)
..+..+++|+++... + .+ ..|- ..++.+|..+......++.|-+++.+.||..
T Consensus 83 ~~~~~~vLinL~~~~--p-~~---~~~f-------------------~rvieiv~~~~~~~~~aR~r~r~Yk~~G~~l 135 (137)
T PF04364_consen 83 PNNHADVLINLSGEV--P-PF---FSRF-------------------ERVIEIVDQDDEAKQAARERYRFYKDRGYEL 135 (137)
T ss_dssp --S--SEEEE--SS-----GG---GGG--------------------SEEEEEE-SSHHHHHHHHHHHHHHHHTTEEE
T ss_pred CCCCCCEEEECCCCC--c-ch---hhcc-------------------cEEEEEecCCHHHHHHHHHHHHHHHHcCCCC
Confidence 334478999985532 1 11 1222 2366888888888888899999999999864
No 477
>PRK05973 replicative DNA helicase; Provisional
Probab=89.22 E-value=0.92 Score=43.17 Aligned_cols=47 Identities=13% Similarity=0.153 Sum_probs=34.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
...+|.+++|+|||..++.++.. .+.++++++---. ..|..+.+..+
T Consensus 65 sl~LIaG~PG~GKT~lalqfa~~~a~~Ge~vlyfSlEes-~~~i~~R~~s~ 114 (237)
T PRK05973 65 DLVLLGARPGHGKTLLGLELAVEAMKSGRTGVFFTLEYT-EQDVRDRLRAL 114 (237)
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEEeCC-HHHHHHHHHHc
Confidence 35688899999999998877653 3668888875443 56666666665
No 478
>COG0593 DnaA ATPase involved in DNA replication initiation [DNA replication, recombination, and repair]
Probab=89.13 E-value=1.5 Score=44.91 Aligned_cols=24 Identities=17% Similarity=0.032 Sum_probs=18.5
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHh
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
....+|++|+|+|||...-++...
T Consensus 113 ~nplfi~G~~GlGKTHLl~Aign~ 136 (408)
T COG0593 113 YNPLFIYGGVGLGKTHLLQAIGNE 136 (408)
T ss_pred CCcEEEECCCCCCHHHHHHHHHHH
Confidence 357899999999999876555533
No 479
>PRK09376 rho transcription termination factor Rho; Provisional
Probab=89.07 E-value=0.69 Score=47.10 Aligned_cols=27 Identities=37% Similarity=0.568 Sum_probs=20.5
Q ss_pred CCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 41 GRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 41 ~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+++.+++|++|.|+|||..+-.++...
T Consensus 167 GkGQR~lIvgppGvGKTTLaK~Ian~I 193 (416)
T PRK09376 167 GKGQRGLIVAPPKAGKTVLLQNIANSI 193 (416)
T ss_pred ccCceEEEeCCCCCChhHHHHHHHHHH
Confidence 334589999999999998876665443
No 480
>PRK12608 transcription termination factor Rho; Provisional
Probab=88.83 E-value=1.2 Score=45.12 Aligned_cols=40 Identities=23% Similarity=0.341 Sum_probs=29.3
Q ss_pred HHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+.-.++++.++--++..+++|.+|.|+|||.....++..+
T Consensus 118 ~~~~RvID~l~PiGkGQR~LIvG~pGtGKTTLl~~la~~i 157 (380)
T PRK12608 118 DLSMRVVDLVAPIGKGQRGLIVAPPRAGKTVLLQQIAAAV 157 (380)
T ss_pred chhHhhhhheeecCCCceEEEECCCCCCHHHHHHHHHHHH
Confidence 4445577766543444589999999999999988776654
No 481
>KOG0701 consensus dsRNA-specific nuclease Dicer and related ribonucleases [RNA processing and modification]
Probab=88.77 E-value=0.28 Score=57.98 Aligned_cols=89 Identities=21% Similarity=0.384 Sum_probs=70.8
Q ss_pred eEEEEecCHHHHHHHHHHh------CCCceeCCC-----------CHHHHHHHHHHhhCCCCccEEEEeCCCcccccCcc
Q 010367 270 KIIVFADNLFALTEYAMKL------RKPMIYGAT-----------SHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (512)
Q Consensus 270 k~iVf~~~~~~~~~l~~~L------~~~~i~g~~-----------~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~ 332 (512)
..|+|++....+...++.+ ...++.|.+ ....+.+++..|..+ .+++|++|.++.+|+|+|.
T Consensus 294 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~k~~~~~~~~~~~~vl~~~~~~-~ln~L~~~~~~~e~~d~~~ 372 (1606)
T KOG0701|consen 294 SGIIFVDQRYTAYVLLELLREIFSNDPLFVTGASGANLWKSFKNELELRQAEVLRRFHFH-ELNLLIATSVLEEGVDVPK 372 (1606)
T ss_pred hheeecccchHHHHHHHHHHHhhccCcceeeccccCccchhhHHHHHhhhHHHHHHHhhh-hhhHHHHHHHHHhhcchhh
Confidence 4589999888877777666 233455544 122456789999996 9999999999999999999
Q ss_pred ccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 333 ANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 333 ~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
++.++.++.+. ..+.++|..||+-++.
T Consensus 373 ~~~~~~~~~~~-~~~~~vq~~~r~~~~~ 399 (1606)
T KOG0701|consen 373 CNLVVLFDAPT-YYRSYVQKKGRARAAD 399 (1606)
T ss_pred hhhheeccCcc-hHHHHHHhhcccccch
Confidence 99888887776 8999999999987765
No 482
>COG0703 AroK Shikimate kinase [Amino acid transport and metabolism]
Probab=88.62 E-value=0.53 Score=42.19 Aligned_cols=28 Identities=25% Similarity=0.264 Sum_probs=24.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
.+.+++++||+|||.++-.++..++-++
T Consensus 3 ~~IvLiG~mGaGKSTIGr~LAk~L~~~F 30 (172)
T COG0703 3 MNIVLIGFMGAGKSTIGRALAKALNLPF 30 (172)
T ss_pred ccEEEEcCCCCCHhHHHHHHHHHcCCCc
Confidence 4789999999999999999998887554
No 483
>PRK14721 flhF flagellar biosynthesis regulator FlhF; Provisional
Probab=88.59 E-value=4.2 Score=42.15 Aligned_cols=23 Identities=26% Similarity=0.349 Sum_probs=18.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
....+++|+|+|||.+...++..
T Consensus 192 ~vi~lvGpnG~GKTTtlakLA~~ 214 (420)
T PRK14721 192 GVYALIGPTGVGKTTTTAKLAAR 214 (420)
T ss_pred cEEEEECCCCCCHHHHHHHHHHH
Confidence 45788899999999987666543
No 484
>PRK10436 hypothetical protein; Provisional
Probab=88.52 E-value=0.78 Score=48.21 Aligned_cols=43 Identities=19% Similarity=0.206 Sum_probs=31.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
-+.+.|.+.+..++.... .-.++++|||+|||.+..+++..+.
T Consensus 201 G~~~~~~~~l~~~~~~~~-GliLvtGpTGSGKTTtL~a~l~~~~ 243 (462)
T PRK10436 201 GMTPAQLAQFRQALQQPQ-GLILVTGPTGSGKTVTLYSALQTLN 243 (462)
T ss_pred CcCHHHHHHHHHHHHhcC-CeEEEECCCCCChHHHHHHHHHhhC
Confidence 466778888888775431 2677889999999998777676653
No 485
>TIGR00602 rad24 checkpoint protein rad24. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=88.41 E-value=4.4 Score=44.38 Aligned_cols=41 Identities=17% Similarity=0.134 Sum_probs=27.3
Q ss_pred cHHHHHHHHHHHhCC-----CCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNG-----RARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~-----~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.+.+.+..++... ..+-.+|.+|+|+|||.++-.++..+
T Consensus 89 ~~~ki~~l~~~l~~~~~~~~~~~illL~GP~GsGKTTl~~~la~~l 134 (637)
T TIGR00602 89 HKKKIEEVETWLKAQVLENAPKRILLITGPSGCGKSTTIKILSKEL 134 (637)
T ss_pred cHHHHHHHHHHHHhcccccCCCcEEEEECCCCCCHHHHHHHHHHHh
Confidence 344555566665532 11238899999999999887776654
No 486
>COG3267 ExeA Type II secretory pathway, component ExeA (predicted ATPase) [Intracellular trafficking and secretion]
Probab=88.35 E-value=5.5 Score=37.98 Aligned_cols=39 Identities=10% Similarity=0.155 Sum_probs=25.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC-C-CEEEEEcChhhHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK-K-SCLCLATNAVSVD 82 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~-~-~~Lvl~P~~~L~~ 82 (512)
+-..++++.|+|||.+.=++..... . .++|+.|...+..
T Consensus 52 g~~~vtGevGsGKTv~~Ral~~s~~~d~~~~v~i~~~~~s~ 92 (269)
T COG3267 52 GILAVTGEVGSGKTVLRRALLASLNEDQVAVVVIDKPTLSD 92 (269)
T ss_pred ceEEEEecCCCchhHHHHHHHHhcCCCceEEEEecCcchhH
Confidence 3678889999999999874444443 3 3444555444333
No 487
>TIGR02974 phageshock_pspF psp operon transcriptional activator PspF. Members of this protein family are PspF, the sigma-54-dependent transcriptional activator of the phage shock protein (psp) operon, in Escherichia coli and numerous other species. The psp operon is induced by a number of stress conditions, including heat shock, ethanol, and filamentous phage infection. Changed com_name to adhere to TIGR role notes conventions. 09/15/06 - DMH
Probab=88.21 E-value=3.5 Score=41.44 Aligned_cols=93 Identities=16% Similarity=0.188 Sum_probs=51.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
.+.+|.+++|+||+.+|-.+-... .++++.|-.. .+...|.+. . .+|.. -+.|++.....
T Consensus 23 ~pVLI~GE~GtGK~~lAr~iH~~s~r~~~pfv~vnc~-~~~~~~l~~-~-lfG~~---~g~~~ga~~~~----------- 85 (329)
T TIGR02974 23 RPVLIIGERGTGKELIAARLHYLSKRWQGPLVKLNCA-ALSENLLDS-E-LFGHE---AGAFTGAQKRH----------- 85 (329)
T ss_pred CCEEEECCCCChHHHHHHHHHHhcCccCCCeEEEeCC-CCChHHHHH-H-Hhccc---cccccCccccc-----------
Confidence 489999999999999876554332 2455555433 233333221 1 12221 12233322110
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~ 170 (512)
.+. +...+=+.+++||++.++...-.+++..+.
T Consensus 86 ~G~-----------------~~~a~gGtL~Ldei~~L~~~~Q~~Ll~~l~ 118 (329)
T TIGR02974 86 QGR-----------------FERADGGTLFLDELATASLLVQEKLLRVIE 118 (329)
T ss_pred CCc-----------------hhhCCCCEEEeCChHhCCHHHHHHHHHHHH
Confidence 011 111345899999999999876666666553
No 488
>TIGR02688 conserved hypothetical protein TIGR02688. Members of this family are uncharacterized proteins sporadically distributed in bacteria and archaea, about 470 amino acids in length. Several members of this family appear in public databases with annotation as ATP-dependent protease La, despite the lack of similarity to families TIGR00763 (ATP-dependent protease La) or pfam02190 (ATP-dependent protease La (LON) domain). This protein is repeatedly found downstream of another uncharacterized protein of about 880 amino acids in length, described by model TIGR02687.
Probab=88.10 E-value=1.6 Score=44.87 Aligned_cols=21 Identities=29% Similarity=0.241 Sum_probs=17.4
Q ss_pred cceEEEcCCCCcHHHHHHHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i 64 (512)
.+.++.+|+|+|||.++..+.
T Consensus 210 ~Nli~lGp~GTGKThla~~l~ 230 (449)
T TIGR02688 210 YNLIELGPKGTGKSYIYNNLS 230 (449)
T ss_pred CcEEEECCCCCCHHHHHHHHh
Confidence 499999999999998776533
No 489
>PRK13851 type IV secretion system protein VirB11; Provisional
Probab=88.06 E-value=1 Score=45.37 Aligned_cols=45 Identities=13% Similarity=0.173 Sum_probs=30.8
Q ss_pred HHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEEcChhh
Q 010367 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLATNAVS 80 (512)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P~~~L 80 (512)
+..+...+ .+.++++|||+|||...-+++..+. .+++.+=++.+|
T Consensus 155 l~~~v~~~--~nilI~G~tGSGKTTll~aLl~~i~~~~rivtiEd~~El 201 (344)
T PRK13851 155 LHACVVGR--LTMLLCGPTGSGKTTMSKTLISAIPPQERLITIEDTLEL 201 (344)
T ss_pred HHHHHHcC--CeEEEECCCCccHHHHHHHHHcccCCCCCEEEECCCccc
Confidence 33334443 4899999999999998877776654 356665565543
No 490
>PF07015 VirC1: VirC1 protein; InterPro: IPR009744 This family consists of several bacterial VirC1 proteins. In Agrobacterium tumefaciens, a cis-active 24-base-pair sequence adjacent to the right border of the T-DNA, called overdrive, stimulates tumour formation by increasing the level of T-DNA processing. It is thought that the virC operon, which enhances T-DNA processing probably, does so because the VirC1 protein interacts with overdrive. It has now been shown that the virC1 gene product binds to overdrive but not to the right border of T-DNA [].
Probab=88.03 E-value=2.2 Score=40.17 Aligned_cols=38 Identities=21% Similarity=0.320 Sum_probs=26.3
Q ss_pred CCCCcHHHHHHHHHHhc---CCCEEEEE--cChhhHHHHHHHHH
Q 010367 51 PCGAGKSLVGVSAACRI---KKSCLCLA--TNAVSVDQWAFQFK 89 (512)
Q Consensus 51 ~tG~GKTl~~i~~i~~~---~~~~Lvl~--P~~~L~~Qw~~~~~ 89 (512)
-=|+|||..++.++..+ +++|.+|= |++.|. .|.+.-.
T Consensus 10 KGGaGKTT~~~~LAs~la~~G~~V~lIDaDpn~pl~-~W~~~a~ 52 (231)
T PF07015_consen 10 KGGAGKTTAAMALASELAARGARVALIDADPNQPLA-KWAENAQ 52 (231)
T ss_pred CCCCcHHHHHHHHHHHHHHCCCeEEEEeCCCCCcHH-HHHHhcc
Confidence 44999999988888655 45665554 888755 6755443
No 491
>TIGR02030 BchI-ChlI magnesium chelatase ATPase subunit I. This model represents one of two ATPase subunits of the trimeric magnesium chelatase responsible for insertion of magnesium ion into protoporphyrin IX. This is an essential step in the biosynthesis of both chlorophyll and bacteriochlorophyll. This subunit is found in green plants, photosynthetic algae, cyanobacteria and other photosynthetic bacteria.
Probab=88.00 E-value=2.4 Score=42.72 Aligned_cols=38 Identities=16% Similarity=0.139 Sum_probs=25.4
Q ss_pred HHHHHHHHHh---CCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 30 QEKSLSKMFG---NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 30 Q~~al~~~~~---~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|.++...++- ..+..+.+|.++.|+|||..+-++....
T Consensus 9 q~~~~~al~~~~~~~~~g~vli~G~~G~gKttl~r~~~~~~ 49 (337)
T TIGR02030 9 QDEMKLALLLNVIDPKIGGVMVMGDRGTGKSTAVRALAALL 49 (337)
T ss_pred HHHHHHHHHHHhcCCCCCeEEEEcCCCCCHHHHHHHHHHhh
Confidence 6666655432 2122378999999999998876666444
No 492
>PRK05580 primosome assembly protein PriA; Validated
Probab=87.92 E-value=3.5 Score=45.86 Aligned_cols=89 Identities=11% Similarity=0.073 Sum_probs=63.6
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh----C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~ 323 (512)
++|-.+...++...- ..|.++||.++++..+..+.+.| + +..+||+++..+|.+...+...+ ..+|+|+|..
T Consensus 173 SGKT~v~l~~i~~~l-~~g~~vLvLvPt~~L~~Q~~~~l~~~fg~~v~~~~s~~s~~~r~~~~~~~~~g-~~~IVVgTrs 250 (679)
T PRK05580 173 SGKTEVYLQAIAEVL-AQGKQALVLVPEIALTPQMLARFRARFGAPVAVLHSGLSDGERLDEWRKAKRG-EAKVVIGARS 250 (679)
T ss_pred ChHHHHHHHHHHHHH-HcCCeEEEEeCcHHHHHHHHHHHHHHhCCCEEEEECCCCHHHHHHHHHHHHcC-CCCEEEeccH
Confidence 456665554544333 45789999999998877766665 3 34689999999999998888887 7899999853
Q ss_pred CcccccCccccEEEEecC
Q 010367 324 GDNSIDIPEANVIIQISS 341 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~~~~ 341 (512)
.- =+.+.++..||+-..
T Consensus 251 al-~~p~~~l~liVvDEe 267 (679)
T PRK05580 251 AL-FLPFKNLGLIIVDEE 267 (679)
T ss_pred Hh-cccccCCCEEEEECC
Confidence 22 245666777776543
No 493
>PRK14873 primosome assembly protein PriA; Provisional
Probab=87.89 E-value=3.2 Score=45.82 Aligned_cols=92 Identities=7% Similarity=0.012 Sum_probs=70.4
Q ss_pred CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh----C---CCceeCCCCHHHHHHHHHHhhCCCCccEEEEe
Q 010367 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL----R---KPMIYGATSHVERTKILQAFKCSRDLNTIFLS 321 (512)
Q Consensus 249 ~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----~---~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t 321 (512)
.++|-++...++...- ..|+.+||.++.+.....+...| + +..+|++++..+|.+...+...| +.+|+|.|
T Consensus 170 GSGKTevyl~~i~~~l-~~Gk~vLvLvPEi~lt~q~~~rl~~~f~~~~v~~lhS~l~~~~R~~~w~~~~~G-~~~IViGt 247 (665)
T PRK14873 170 GEDWARRLAAAAAATL-RAGRGALVVVPDQRDVDRLEAALRALLGAGDVAVLSAGLGPADRYRRWLAVLRG-QARVVVGT 247 (665)
T ss_pred CCcHHHHHHHHHHHHH-HcCCeEEEEecchhhHHHHHHHHHHHcCCCcEEEECCCCCHHHHHHHHHHHhCC-CCcEEEEc
Confidence 4578888888886665 67889999999998877666665 3 45699999999999999999997 89999998
Q ss_pred CCCcccccCccccEEEEecCCC
Q 010367 322 KVGDNSIDIPEANVIIQISSHA 343 (512)
Q Consensus 322 ~~~~~GlDlp~~~~vI~~~~~~ 343 (512)
..+- =.-+++...||+.+.+.
T Consensus 248 RSAv-FaP~~~LgLIIvdEEhd 268 (665)
T PRK14873 248 RSAV-FAPVEDLGLVAIWDDGD 268 (665)
T ss_pred ceeE-EeccCCCCEEEEEcCCc
Confidence 5542 23455566777765543
No 494
>PRK05917 DNA polymerase III subunit delta'; Validated
Probab=87.87 E-value=6.2 Score=38.73 Aligned_cols=37 Identities=14% Similarity=-0.037 Sum_probs=27.8
Q ss_pred HHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 32 KSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 32 ~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+.+...+..++ ++..++.+|.|.||+.++..++..+.
T Consensus 7 ~~L~~~i~~~rl~HAyLf~G~~G~Gk~~lA~~~A~~ll 44 (290)
T PRK05917 7 EALIQRVRDQKVPSAIILHGQDLSNLSARAYELASLIL 44 (290)
T ss_pred HHHHHHHHcCCcCeeEeeECCCCCcHHHHHHHHHHHHh
Confidence 34555566654 45667999999999999999987763
No 495
>PF06309 Torsin: Torsin; InterPro: IPR010448 This family consists of several eukaryotic torsin proteins. Torsion dystonia is an autosomal dominant movement disorder characterised by involuntary, repetitive muscle contractions and twisted postures. The most severe early-onset form of dystonia has been linked to mutations in the human DYT1 (TOR1A) gene encoding a protein termed torsinA. While causative genetic alterations have been identified, the function of torsin proteins and the molecular mechanism underlying dystonia remain unknown. Phylogenetic analysis of the torsin protein family indicates these proteins share distant sequence similarity with the large and diverse family of AAA ATPase, central region containing proteins () proteins. It has been suggested that torsins play a role in effectively managing protein folding and that possible breakdown in a neuroprotective mechanism that is, in part, mediated by torsins may be responsible for the neuronal dysfunction associated with dystonia [].; GO: 0005524 ATP binding, 0051085 chaperone mediated protein folding requiring cofactor
Probab=87.76 E-value=1.7 Score=36.83 Aligned_cols=49 Identities=22% Similarity=0.224 Sum_probs=33.9
Q ss_pred cceE--EEcCCCCcHHHHHHHHHHhcCC------CE-----EEEEcChhhHHHHHHHHHHhh
Q 010367 44 RSGI--IVLPCGAGKSLVGVSAACRIKK------SC-----LCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 44 ~~~i--l~~~tG~GKTl~~i~~i~~~~~------~~-----Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
+..+ +.++||+|||.++-.++..+.+ -| ..-.|...-+.+...+++.|.
T Consensus 52 KpLVlSfHG~tGtGKn~v~~liA~~ly~~G~~S~~V~~f~~~~hFP~~~~v~~Yk~~L~~~I 113 (127)
T PF06309_consen 52 KPLVLSFHGWTGTGKNFVSRLIAEHLYKSGMKSPFVHQFIATHHFPHNSNVDEYKEQLKSWI 113 (127)
T ss_pred CCEEEEeecCCCCcHHHHHHHHHHHHHhcccCCCceeeecccccCCCchHHHHHHHHHHHHH
Confidence 4555 4589999999999888876521 12 222366667788888888874
No 496
>PF00437 T2SE: Type II/IV secretion system protein; InterPro: IPR001482 A number of bacterial proteins, some of which are involved in a general secretion pathway (GSP) for the export of proteins (also called the type II pathway) belong to this group [, ]. These proteins are probably located in the cytoplasm and, on the basis of the presence of a conserved P-loop region IPR001687 from INTERPRO, bind ATP.; GO: 0005524 ATP binding, 0006810 transport, 0005622 intracellular; PDB: 1NLZ_C 2PT7_B 1OPX_A 1NLY_A 1G6O_B 2OAQ_2 2OAP_1 2JNQ_A 2JMZ_A 2GZA_B ....
Probab=87.51 E-value=1 Score=43.75 Aligned_cols=36 Identities=17% Similarity=0.167 Sum_probs=26.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC---CCEEEEEcChh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAV 79 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~P~~~ 79 (512)
.+.+++++||+|||.+.-+++..+. .+++++-...+
T Consensus 128 ~~ili~G~tGSGKTT~l~all~~i~~~~~~iv~iEd~~E 166 (270)
T PF00437_consen 128 GNILISGPTGSGKTTLLNALLEEIPPEDERIVTIEDPPE 166 (270)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHCHTTTSEEEEEESSS-
T ss_pred eEEEEECCCccccchHHHHHhhhccccccceEEeccccc
Confidence 4889999999999999887777663 35555555444
No 497
>PHA02774 E1; Provisional
Probab=87.46 E-value=4.8 Score=43.17 Aligned_cols=46 Identities=17% Similarity=0.189 Sum_probs=32.8
Q ss_pred HHHHHHHhCCCC-cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 32 KSLSKMFGNGRA-RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 32 ~al~~~~~~~~~-~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
.++..++.+.+. +..++.+|+|+|||..+.+++..++++++-.+..
T Consensus 422 ~~lk~~l~~~PKknciv~~GPP~TGKS~fa~sL~~~L~G~vi~fvN~ 468 (613)
T PHA02774 422 TALKDFLKGIPKKNCLVIYGPPDTGKSMFCMSLIKFLKGKVISFVNS 468 (613)
T ss_pred HHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCCEEEEEEC
Confidence 445555655432 4577889999999999999998877666555443
No 498
>TIGR00150 HI0065_YjeE ATPase, YjeE family. Members of this family have a conserved nucleotide-binding motif GXXGXGKT and a nucleotide-binding fold. Member protein YjeE of Haemophilus influenzae (HI0065) was shown to have ATPase activity.
Probab=87.27 E-value=0.61 Score=40.09 Aligned_cols=39 Identities=13% Similarity=0.017 Sum_probs=30.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQ 83 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Q 83 (512)
-.++.++.|+|||..+-.++..++..--|-.||-.|+..
T Consensus 24 ~i~l~G~lGaGKTtl~~~l~~~lg~~~~v~SPTf~lv~~ 62 (133)
T TIGR00150 24 VVLLKGDLGAGKTTLVQGLLQGLGIQGNVTSPTFTLVNE 62 (133)
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCCCCcccCCCeeeeee
Confidence 567889999999999888888877555577788776554
No 499
>PRK04841 transcriptional regulator MalT; Provisional
Probab=87.21 E-value=7.6 Score=44.74 Aligned_cols=50 Identities=18% Similarity=0.082 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
..-.||--.+-+... ...+-.+|.+|.|.|||.....++...+ ++.|+.-
T Consensus 15 ~~~~R~rl~~~l~~~---~~~~~~~v~apaG~GKTtl~~~~~~~~~-~~~w~~l 64 (903)
T PRK04841 15 NTVVRERLLAKLSGA---NNYRLVLVTSPAGYGKTTLISQWAAGKN-NLGWYSL 64 (903)
T ss_pred ccCcchHHHHHHhcc---cCCCeEEEECCCCCCHHHHHHHHHHhCC-CeEEEec
Confidence 344555433333322 2224689999999999999888887666 7888753
No 500
>TIGR02239 recomb_RAD51 DNA repair protein RAD51. This eukaryotic sequence family consists of RAD51, a protein involved in DNA homologous recombination and repair. It is similar in sequence the exclusively meiotic recombinase DMC1 (TIGR02238), to archaeal families RadA (TIGR02236) and RadB (TIGR02237), and to bacterial RecA (TIGR02012).
Probab=87.07 E-value=2.7 Score=41.92 Aligned_cols=47 Identities=23% Similarity=0.307 Sum_probs=31.2
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh--c----C---CCEEEEEcCh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I----K---KSCLCLATNA 78 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~--~----~---~~~Lvl~P~~ 78 (512)
+.++.++.++ ...-..+.+|+|+|||..+..++.. + + .+++++....
T Consensus 83 ~~lD~ll~gGi~~g~i~~i~G~~g~GKT~l~~~~~~~~~~~~~~Gg~~~~vvyIdtE~ 140 (316)
T TIGR02239 83 KELDKLLGGGIETGSITEIFGEFRTGKTQLCHTLAVTCQLPIDQGGGEGKALYIDTEG 140 (316)
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCcCHHHHHHHHHHhhhhhcCCCCceEEEEECCC
Confidence 3466666654 2234568899999999998777642 1 1 3678877544
Done!