Query 010367
Match_columns 512
No_of_seqs 386 out of 2647
Neff 8.9
Searched_HMMs 29240
Date Mon Mar 25 05:16:48 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010367.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010367hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2fwr_A DNA repair protein RAD2 100.0 1.3E-49 4.4E-54 419.4 31.2 342 19-398 87-467 (472)
2 3mwy_W Chromo domain-containin 100.0 1.1E-46 3.6E-51 419.9 38.6 349 23-399 234-698 (800)
3 1z63_A Helicase of the SNF2/RA 100.0 4E-46 1.4E-50 395.5 35.0 346 20-394 32-462 (500)
4 1z3i_X Similar to RAD54-like; 100.0 7.9E-45 2.7E-49 395.4 34.5 351 23-399 53-542 (644)
5 2oca_A DAR protein, ATP-depend 100.0 8.2E-43 2.8E-47 371.0 32.1 336 23-386 111-459 (510)
6 1wp9_A ATP-dependent RNA helic 100.0 3.6E-42 1.2E-46 361.8 26.6 344 23-394 7-484 (494)
7 3dmq_A RNA polymerase-associat 100.0 3.6E-39 1.2E-43 364.5 32.2 349 21-396 149-626 (968)
8 3tbk_A RIG-I helicase domain; 100.0 2.7E-39 9.1E-44 346.7 29.5 339 23-390 2-512 (555)
9 4a2p_A RIG-I, retinoic acid in 100.0 3.4E-39 1.2E-43 346.2 28.7 340 22-390 4-513 (556)
10 3h1t_A Type I site-specific re 100.0 3.9E-39 1.3E-43 348.6 26.8 335 21-382 174-558 (590)
11 4a2q_A RIG-I, retinoic acid in 100.0 2.4E-38 8.4E-43 353.3 32.2 340 23-391 246-755 (797)
12 1s2m_A Putative ATP-dependent 100.0 1.3E-37 4.4E-42 320.4 28.4 302 25-386 43-366 (400)
13 1xti_A Probable ATP-dependent 100.0 6.6E-38 2.3E-42 321.3 25.0 292 25-361 30-346 (391)
14 2j0s_A ATP-dependent RNA helic 100.0 4.1E-38 1.4E-42 325.3 22.2 304 25-386 59-384 (410)
15 2db3_A ATP-dependent RNA helic 100.0 1.1E-37 3.8E-42 324.5 25.5 318 24-402 77-423 (434)
16 4a2w_A RIG-I, retinoic acid in 100.0 3E-37 1E-41 348.4 30.1 343 21-392 244-756 (936)
17 2z0m_A 337AA long hypothetical 100.0 1.3E-37 4.4E-42 312.4 23.8 287 24-361 15-312 (337)
18 1hv8_A Putative ATP-dependent 100.0 4.6E-37 1.6E-41 311.9 28.1 289 24-361 27-334 (367)
19 3eiq_A Eukaryotic initiation f 100.0 1E-37 3.6E-42 322.3 20.0 305 24-386 61-388 (414)
20 2i4i_A ATP-dependent RNA helic 100.0 1.1E-36 3.9E-41 315.0 25.7 293 24-361 36-372 (417)
21 3pey_A ATP-dependent RNA helic 100.0 2.6E-36 9E-41 309.4 27.9 296 24-361 26-345 (395)
22 4gl2_A Interferon-induced heli 100.0 2.2E-36 7.7E-41 333.5 28.5 329 22-360 4-509 (699)
23 1fuu_A Yeast initiation factor 100.0 3.7E-38 1.3E-42 323.4 9.6 293 24-361 42-355 (394)
24 2v1x_A ATP-dependent DNA helic 100.0 1.8E-35 6.3E-40 317.5 30.1 291 24-361 43-363 (591)
25 3fht_A ATP-dependent RNA helic 100.0 4.4E-35 1.5E-39 302.3 30.7 297 24-361 46-368 (412)
26 2ykg_A Probable ATP-dependent 100.0 1.4E-35 4.6E-40 327.1 26.8 337 23-389 11-520 (696)
27 3sqw_A ATP-dependent RNA helic 100.0 1.8E-35 6.1E-40 319.0 27.1 304 24-361 42-387 (579)
28 3oiy_A Reverse gyrase helicase 100.0 1.9E-34 6.5E-39 298.5 33.3 291 23-382 19-362 (414)
29 1oyw_A RECQ helicase, ATP-depe 100.0 2.8E-35 9.5E-40 312.7 27.6 283 24-361 24-332 (523)
30 3i5x_A ATP-dependent RNA helic 100.0 2.4E-35 8.1E-40 317.3 26.8 304 24-361 93-438 (563)
31 2xgj_A ATP-dependent RNA helic 100.0 4.2E-34 1.4E-38 322.8 32.5 331 21-386 82-500 (1010)
32 2eyq_A TRCF, transcription-rep 100.0 3.9E-34 1.3E-38 327.6 31.4 316 21-399 599-936 (1151)
33 3l9o_A ATP-dependent RNA helic 100.0 2.6E-33 8.9E-38 319.0 34.8 332 21-386 180-598 (1108)
34 3fmp_B ATP-dependent RNA helic 100.0 3.7E-35 1.3E-39 309.6 12.0 297 24-361 113-435 (479)
35 3fho_A ATP-dependent RNA helic 100.0 5.2E-35 1.8E-39 310.3 13.1 295 25-361 141-459 (508)
36 2p6r_A Afuhel308 helicase; pro 100.0 1.2E-32 4.1E-37 303.4 24.1 310 25-386 25-389 (702)
37 2w00_A HSDR, R.ECOR124I; ATP-b 100.0 1.4E-32 4.7E-37 309.0 23.8 334 24-383 270-707 (1038)
38 4a4z_A Antiviral helicase SKI2 100.0 1.5E-31 5.2E-36 302.0 32.1 333 21-389 35-496 (997)
39 1gm5_A RECG; helicase, replica 100.0 6E-34 2.1E-38 312.3 11.2 289 23-361 366-686 (780)
40 2zj8_A DNA helicase, putative 100.0 1.1E-32 3.8E-37 304.5 21.4 312 24-388 22-390 (720)
41 2va8_A SSO2462, SKI2-type heli 100.0 8.7E-32 3E-36 297.4 28.3 317 25-386 30-409 (715)
42 4ddu_A Reverse gyrase; topoiso 100.0 9.7E-30 3.3E-34 289.6 28.6 262 23-343 76-388 (1104)
43 4f92_B U5 small nuclear ribonu 100.0 7.5E-29 2.6E-33 291.8 24.9 312 24-388 78-476 (1724)
44 1gku_B Reverse gyrase, TOP-RG; 100.0 4.6E-28 1.6E-32 275.8 24.8 259 23-342 55-352 (1054)
45 4f92_B U5 small nuclear ribonu 100.0 4.6E-28 1.6E-32 285.1 23.3 299 25-361 926-1295(1724)
46 2v6i_A RNA helicase; membrane, 100.0 1.2E-27 4.3E-32 248.1 20.7 247 44-361 3-279 (431)
47 2jlq_A Serine protease subunit 100.0 5.4E-28 1.8E-32 252.4 17.0 260 25-361 4-299 (451)
48 1yks_A Genome polyprotein [con 100.0 2.2E-28 7.7E-33 254.2 13.8 245 44-360 9-286 (440)
49 2z83_A Helicase/nucleoside tri 100.0 3E-28 1E-32 254.7 13.1 251 37-361 17-301 (459)
50 2xau_A PRE-mRNA-splicing facto 99.9 6.4E-27 2.2E-31 258.1 22.9 288 25-360 93-432 (773)
51 2whx_A Serine protease/ntpase/ 99.9 3.6E-27 1.2E-31 253.9 18.2 260 26-361 172-466 (618)
52 2wv9_A Flavivirin protease NS2 99.9 1.5E-27 5.2E-32 258.5 13.1 262 25-360 215-520 (673)
53 3o8b_A HCV NS3 protease/helica 99.9 3.8E-27 1.3E-31 252.0 13.6 255 26-361 218-504 (666)
54 1tf5_A Preprotein translocase 99.9 3.5E-25 1.2E-29 238.9 25.1 324 23-361 81-534 (844)
55 3rc3_A ATP-dependent RNA helic 99.9 4.9E-25 1.7E-29 238.2 23.6 246 44-361 156-431 (677)
56 2fsf_A Preprotein translocase 99.9 2.7E-25 9.1E-30 239.2 17.8 107 250-361 424-572 (853)
57 2fz4_A DNA repair protein RAD2 99.9 1.9E-24 6.3E-29 206.0 18.0 155 13-188 80-235 (237)
58 1nkt_A Preprotein translocase 99.9 8E-24 2.7E-28 228.1 23.0 326 24-361 110-606 (922)
59 1rif_A DAR protein, DNA helica 99.9 4.4E-24 1.5E-28 209.0 15.5 162 24-199 112-280 (282)
60 1c4o_A DNA nucleotide excision 99.9 1.8E-22 6.2E-27 219.4 24.7 107 267-389 438-554 (664)
61 1z5z_A Helicase of the SNF2/RA 99.9 5.6E-22 1.9E-26 192.2 17.7 175 212-399 24-238 (271)
62 2d7d_A Uvrabc system protein B 99.9 1.3E-20 4.3E-25 204.8 30.2 108 266-389 443-560 (661)
63 3b6e_A Interferon-induced heli 99.8 8.8E-21 3E-25 177.4 12.8 155 20-180 28-216 (216)
64 1t6n_A Probable ATP-dependent 99.8 1.4E-20 4.8E-25 177.0 12.8 150 25-185 36-204 (220)
65 1vec_A ATP-dependent RNA helic 99.8 1.7E-20 5.9E-25 174.4 12.1 149 24-183 24-189 (206)
66 1q0u_A Bstdead; DEAD protein, 99.8 3E-20 1E-24 174.7 12.1 149 24-183 25-193 (219)
67 2pl3_A Probable ATP-dependent 99.8 4.7E-20 1.6E-24 175.4 12.7 150 24-183 46-214 (236)
68 2gxq_A Heat resistant RNA depe 99.8 3.4E-20 1.2E-24 172.5 11.5 147 24-183 22-187 (207)
69 1wrb_A DJVLGB; RNA helicase, D 99.8 1E-19 3.5E-24 175.0 14.5 150 24-184 44-222 (253)
70 1qde_A EIF4A, translation init 99.8 5.8E-20 2E-24 173.2 12.0 149 24-183 35-198 (224)
71 3ber_A Probable ATP-dependent 99.8 4.1E-20 1.4E-24 177.4 11.1 150 24-183 64-229 (249)
72 3iuy_A Probable ATP-dependent 99.8 1.4E-19 4.7E-24 171.2 13.6 148 24-183 41-210 (228)
73 2oxc_A Probable ATP-dependent 99.8 1.2E-19 4.2E-24 171.9 13.2 148 25-183 46-210 (230)
74 3jux_A Protein translocase sub 99.8 8.2E-20 2.8E-24 193.0 12.7 106 251-361 458-576 (822)
75 3ly5_A ATP-dependent RNA helic 99.8 7.6E-20 2.6E-24 176.9 10.7 150 25-184 76-245 (262)
76 2hjv_A ATP-dependent RNA helic 99.8 8E-19 2.7E-23 157.1 15.6 107 250-361 20-131 (163)
77 3bor_A Human initiation factor 99.8 1.1E-19 3.7E-24 173.1 10.6 148 25-183 52-216 (237)
78 2vl7_A XPD; helicase, unknown 99.8 2.6E-18 9.1E-23 182.8 22.4 67 23-91 5-74 (540)
79 3dkp_A Probable ATP-dependent 99.8 1.4E-19 4.8E-24 173.1 10.5 151 24-183 50-222 (245)
80 3fe2_A Probable ATP-dependent 99.8 1.2E-19 3.9E-24 173.5 9.8 149 24-183 50-219 (242)
81 1t5i_A C_terminal domain of A 99.8 1E-18 3.5E-23 157.8 14.0 107 250-361 16-127 (172)
82 2rb4_A ATP-dependent RNA helic 99.8 3.1E-18 1.1E-22 155.1 14.3 118 252-386 21-148 (175)
83 1fuk_A Eukaryotic initiation f 99.8 1.9E-18 6.6E-23 154.9 12.2 118 252-387 17-139 (165)
84 2jgn_A DBX, DDX3, ATP-dependen 99.8 3.2E-18 1.1E-22 156.4 13.7 108 250-361 30-142 (185)
85 3eaq_A Heat resistant RNA depe 99.8 4.3E-18 1.5E-22 159.1 14.0 108 249-361 15-127 (212)
86 2p6n_A ATP-dependent RNA helic 99.7 8.4E-18 2.9E-22 154.4 13.6 132 251-402 41-177 (191)
87 3fmo_B ATP-dependent RNA helic 99.7 1.2E-17 4.2E-22 164.4 11.4 152 24-183 113-279 (300)
88 3i32_A Heat resistant RNA depe 99.7 3.6E-17 1.2E-21 160.3 11.6 108 249-361 12-124 (300)
89 2yjt_D ATP-dependent RNA helic 99.5 1E-18 3.6E-23 157.5 0.0 107 250-361 15-126 (170)
90 3crv_A XPD/RAD3 related DNA he 99.7 1E-14 3.4E-19 155.8 29.8 126 24-159 2-187 (551)
91 2ipc_A Preprotein translocase 99.6 1.1E-14 3.7E-19 156.9 20.4 130 23-158 77-215 (997)
92 3llm_A ATP-dependent RNA helic 99.6 2.3E-14 8E-19 135.9 16.0 145 24-183 60-220 (235)
93 4a15_A XPD helicase, ATP-depen 99.5 3.5E-12 1.2E-16 137.4 21.9 67 24-92 2-75 (620)
94 3hgt_A HDA1 complex subunit 3; 99.3 4.3E-12 1.5E-16 123.3 10.7 127 248-391 106-243 (328)
95 3e1s_A Exodeoxyribonuclease V, 98.4 1.8E-06 6.2E-11 91.9 13.1 128 23-183 187-317 (574)
96 2gk6_A Regulator of nonsense t 98.3 1.5E-05 5.1E-10 86.0 18.1 65 24-91 179-247 (624)
97 4b3f_X DNA-binding protein smu 98.3 1.7E-06 5.9E-11 93.8 10.3 66 24-91 188-256 (646)
98 1w36_D RECD, exodeoxyribonucle 98.2 2.3E-06 7.8E-11 92.0 9.3 139 27-183 151-300 (608)
99 2xzl_A ATP-dependent helicase 98.2 1.4E-05 4.7E-10 88.3 15.6 65 24-91 359-427 (802)
100 3upu_A ATP-dependent DNA helic 98.2 9.2E-06 3.2E-10 84.3 12.4 136 23-183 23-166 (459)
101 2wjy_A Regulator of nonsense t 98.1 4.1E-05 1.4E-09 84.4 16.2 66 23-91 354-423 (800)
102 2o0j_A Terminase, DNA packagin 97.8 0.00043 1.5E-08 69.5 15.2 142 24-184 162-316 (385)
103 3vkw_A Replicase large subunit 97.7 6.4E-05 2.2E-09 76.5 8.2 110 44-183 162-271 (446)
104 3cpe_A Terminase, DNA packagin 97.6 0.0011 3.6E-08 71.0 16.5 142 24-184 162-316 (592)
105 3lfu_A DNA helicase II; SF1 he 97.5 0.00024 8.1E-09 76.9 10.1 66 24-94 8-80 (647)
106 2j9r_A Thymidine kinase; TK1, 97.3 0.00091 3.1E-08 61.1 9.9 34 46-79 31-67 (214)
107 2orw_A Thymidine kinase; TMTK, 97.3 0.00083 2.8E-08 60.3 9.5 34 45-78 5-41 (184)
108 1xx6_A Thymidine kinase; NESG, 97.2 0.0014 4.9E-08 59.0 9.8 35 44-78 9-46 (191)
109 3pvs_A Replication-associated 97.1 0.0013 4.3E-08 67.7 9.7 44 32-75 39-82 (447)
110 1a5t_A Delta prime, HOLB; zinc 97.1 0.0035 1.2E-07 61.8 12.4 43 26-68 3-49 (334)
111 2b8t_A Thymidine kinase; deoxy 97.1 0.00057 2E-08 63.2 6.0 36 44-79 13-51 (223)
112 3u61_B DNA polymerase accessor 97.1 0.0047 1.6E-07 60.4 12.7 55 24-78 28-83 (324)
113 2p65_A Hypothetical protein PF 97.0 0.0035 1.2E-07 55.3 10.0 43 25-67 25-67 (187)
114 1l8q_A Chromosomal replication 96.9 0.014 4.7E-07 57.1 14.8 43 34-76 26-73 (324)
115 3eie_A Vacuolar protein sortin 96.9 0.0039 1.3E-07 61.1 10.7 33 44-76 52-84 (322)
116 1jbk_A CLPB protein; beta barr 96.9 0.0053 1.8E-07 54.3 10.6 44 24-67 24-67 (195)
117 3e2i_A Thymidine kinase; Zn-bi 96.8 0.0056 1.9E-07 55.8 9.8 35 45-79 30-67 (219)
118 1d2n_A N-ethylmaleimide-sensit 96.7 0.005 1.7E-07 58.6 9.5 34 42-75 63-96 (272)
119 3vfd_A Spastin; ATPase, microt 96.7 0.0048 1.6E-07 62.2 9.7 34 43-76 148-181 (389)
120 2chg_A Replication factor C sm 96.7 0.014 4.9E-07 52.8 12.0 43 25-67 20-62 (226)
121 3ec2_A DNA replication protein 96.6 0.013 4.4E-07 51.8 10.5 60 27-87 16-85 (180)
122 2qby_B CDC6 homolog 3, cell di 96.5 0.011 3.9E-07 58.9 11.0 45 23-67 21-69 (384)
123 2gno_A DNA polymerase III, gam 96.5 0.018 6.2E-07 55.8 11.6 34 32-65 7-40 (305)
124 2zan_A Vacuolar protein sortin 96.5 0.0052 1.8E-07 63.1 8.0 33 43-75 167-200 (444)
125 3pfi_A Holliday junction ATP-d 96.5 0.016 5.4E-07 56.9 11.3 50 25-74 32-86 (338)
126 2zpa_A Uncharacterized protein 96.5 0.0076 2.6E-07 64.3 9.3 118 23-183 173-290 (671)
127 2qp9_X Vacuolar protein sortin 96.4 0.0059 2E-07 60.8 7.9 33 44-76 85-117 (355)
128 3h4m_A Proteasome-activating n 96.4 0.0034 1.2E-07 60.2 5.9 35 42-76 50-84 (285)
129 2bjv_A PSP operon transcriptio 96.4 0.013 4.4E-07 55.4 9.9 33 44-76 30-65 (265)
130 1xwi_A SKD1 protein; VPS4B, AA 96.4 0.0027 9.3E-08 62.3 5.1 33 44-76 46-79 (322)
131 1fnn_A CDC6P, cell division co 96.3 0.044 1.5E-06 54.6 13.9 53 23-75 18-80 (389)
132 4b4t_J 26S protease regulatory 96.3 0.007 2.4E-07 60.7 7.6 37 42-78 181-217 (405)
133 3syl_A Protein CBBX; photosynt 96.3 0.029 1E-06 54.1 12.0 25 43-67 67-91 (309)
134 3co5_A Putative two-component 96.3 0.0089 3E-07 50.9 7.3 25 44-68 28-52 (143)
135 2orv_A Thymidine kinase; TP4A 96.3 0.011 3.7E-07 54.5 8.1 35 45-79 21-58 (234)
136 1iqp_A RFCS; clamp loader, ext 96.3 0.024 8.1E-07 55.1 11.2 43 25-67 28-70 (327)
137 3bos_A Putative DNA replicatio 96.3 0.012 4.2E-07 54.2 8.6 39 29-67 38-76 (242)
138 1sxj_D Activator 1 41 kDa subu 96.2 0.0039 1.3E-07 61.6 5.4 40 28-67 43-82 (353)
139 3d8b_A Fidgetin-like protein 1 96.2 0.0095 3.2E-07 59.3 8.0 34 43-76 117-150 (357)
140 1sxj_B Activator 1 37 kDa subu 96.2 0.016 5.6E-07 56.1 9.5 43 25-67 24-66 (323)
141 2z4s_A Chromosomal replication 96.2 0.08 2.7E-06 54.1 14.9 34 43-76 130-168 (440)
142 1njg_A DNA polymerase III subu 96.1 0.056 1.9E-06 49.4 12.4 44 24-67 25-69 (250)
143 1w4r_A Thymidine kinase; type 96.1 0.012 4.2E-07 52.8 7.3 35 44-78 21-58 (195)
144 2qz4_A Paraplegin; AAA+, SPG7, 96.1 0.012 4.2E-07 55.2 7.8 35 43-77 39-73 (262)
145 3n70_A Transport activator; si 96.0 0.015 5.3E-07 49.5 7.5 24 44-67 25-48 (145)
146 1uaa_A REP helicase, protein ( 96.0 0.013 4.4E-07 63.5 8.4 81 25-126 2-89 (673)
147 1hqc_A RUVB; extended AAA-ATPa 95.9 0.042 1.4E-06 53.4 10.9 51 24-74 14-69 (324)
148 4b4t_L 26S protease subunit RP 95.9 0.011 3.9E-07 60.0 6.8 37 42-78 214-250 (437)
149 2v1u_A Cell division control p 95.8 0.063 2.2E-06 53.3 12.2 45 23-67 20-68 (387)
150 4b4t_H 26S protease regulatory 95.8 0.021 7E-07 58.2 8.3 37 42-78 242-278 (467)
151 1jr3_A DNA polymerase III subu 95.8 0.043 1.5E-06 54.4 10.7 44 25-68 19-63 (373)
152 3hjh_A Transcription-repair-co 95.8 0.029 1E-06 57.9 9.4 80 45-127 16-116 (483)
153 4b4t_I 26S protease regulatory 95.6 0.011 3.7E-07 59.7 5.5 36 42-77 215-250 (437)
154 1um8_A ATP-dependent CLP prote 95.5 0.022 7.4E-07 57.0 7.4 32 44-75 73-104 (376)
155 2chq_A Replication factor C sm 95.5 0.021 7.3E-07 55.2 7.1 41 27-67 22-62 (319)
156 3t15_A Ribulose bisphosphate c 95.5 0.021 7.3E-07 55.0 6.8 34 43-76 36-69 (293)
157 4b4t_M 26S protease regulatory 95.5 0.0097 3.3E-07 60.5 4.5 37 42-78 214-250 (434)
158 3hu3_A Transitional endoplasmi 95.5 0.043 1.5E-06 56.9 9.4 34 42-75 237-270 (489)
159 3cf0_A Transitional endoplasmi 95.3 0.032 1.1E-06 53.9 7.5 33 43-75 49-81 (301)
160 1sxj_A Activator 1 95 kDa subu 95.3 0.051 1.8E-06 56.8 9.5 52 26-77 43-111 (516)
161 3uk6_A RUVB-like 2; hexameric 95.3 0.087 3E-06 52.1 10.9 49 27-75 49-104 (368)
162 1qvr_A CLPB protein; coiled co 95.3 0.055 1.9E-06 60.3 10.1 41 27-67 175-215 (854)
163 2qby_A CDC6 homolog 1, cell di 95.2 0.065 2.2E-06 53.1 9.6 53 23-75 21-83 (386)
164 1ojl_A Transcriptional regulat 95.2 0.025 8.7E-07 54.8 6.2 32 44-75 26-60 (304)
165 1sxj_C Activator 1 40 kDa subu 95.1 0.16 5.5E-06 49.8 12.1 41 28-68 31-71 (340)
166 4b4t_K 26S protease regulatory 95.1 0.022 7.6E-07 57.8 5.8 36 42-77 205-240 (428)
167 3b9p_A CG5977-PA, isoform A; A 94.9 0.02 6.9E-07 55.0 4.7 34 43-76 54-87 (297)
168 1sxj_E Activator 1 40 kDa subu 94.8 0.11 3.8E-06 51.0 10.1 41 27-67 19-60 (354)
169 4fcw_A Chaperone protein CLPB; 94.7 0.035 1.2E-06 53.5 6.0 31 45-75 49-82 (311)
170 2cvh_A DNA repair and recombin 94.7 0.04 1.4E-06 50.1 5.8 56 32-87 7-65 (220)
171 2dr3_A UPF0273 protein PH0284; 94.6 0.1 3.4E-06 48.3 8.4 56 34-90 12-72 (247)
172 1r6b_X CLPA protein; AAA+, N-t 94.5 0.047 1.6E-06 60.0 6.9 41 27-67 191-231 (758)
173 2ce7_A Cell division protein F 94.5 0.081 2.8E-06 54.5 8.1 33 43-75 49-81 (476)
174 1g5t_A COB(I)alamin adenosyltr 94.3 0.15 5.1E-06 45.7 8.4 125 45-182 30-163 (196)
175 1pjr_A PCRA; DNA repair, DNA r 94.3 0.068 2.3E-06 58.4 7.4 75 25-104 11-94 (724)
176 1n0w_A DNA repair protein RAD5 94.2 0.22 7.7E-06 45.7 10.0 46 33-78 12-68 (243)
177 2z43_A DNA repair and recombin 94.1 0.15 5E-06 49.8 8.7 59 32-90 94-164 (324)
178 2kjq_A DNAA-related protein; s 93.4 0.086 2.9E-06 45.1 5.0 24 44-67 37-60 (149)
179 1xp8_A RECA protein, recombina 93.3 0.27 9.1E-06 48.8 9.1 52 32-84 60-117 (366)
180 3dm5_A SRP54, signal recogniti 93.2 0.52 1.8E-05 47.8 11.2 32 44-75 101-135 (443)
181 3kl4_A SRP54, signal recogniti 93.2 0.43 1.5E-05 48.3 10.7 32 44-75 98-132 (433)
182 3hr8_A Protein RECA; alpha and 93.2 0.36 1.2E-05 47.6 9.8 49 32-80 47-101 (356)
183 2zr9_A Protein RECA, recombina 93.2 0.31 1.1E-05 48.0 9.3 49 31-79 46-100 (349)
184 1w5s_A Origin recognition comp 93.1 0.35 1.2E-05 48.4 9.9 46 22-67 22-76 (412)
185 3cf2_A TER ATPase, transitiona 93.0 0.17 5.8E-06 55.4 7.8 35 42-76 237-271 (806)
186 1u94_A RECA protein, recombina 93.0 0.36 1.2E-05 47.7 9.5 49 32-80 49-103 (356)
187 3k1j_A LON protease, ATP-depen 92.9 0.61 2.1E-05 49.6 11.7 34 33-68 52-85 (604)
188 2r8r_A Sensor protein; KDPD, P 92.8 2.5 8.4E-05 38.7 14.1 32 44-75 7-41 (228)
189 1r6b_X CLPA protein; AAA+, N-t 92.7 0.13 4.6E-06 56.3 6.6 30 45-74 490-519 (758)
190 1v5w_A DMC1, meiotic recombina 92.6 0.55 1.9E-05 46.1 10.2 59 32-90 109-179 (343)
191 3pxi_A Negative regulator of g 92.4 0.068 2.3E-06 58.7 3.6 23 45-67 523-545 (758)
192 3io5_A Recombination and repai 92.2 0.7 2.4E-05 44.7 9.9 100 32-158 12-124 (333)
193 3cf2_A TER ATPase, transitiona 91.7 0.2 6.9E-06 54.8 6.2 34 42-75 510-543 (806)
194 1qvr_A CLPB protein; coiled co 91.5 0.13 4.3E-06 57.4 4.5 30 141-170 656-685 (854)
195 2r6a_A DNAB helicase, replicat 91.4 0.63 2.2E-05 47.6 9.4 55 33-88 192-251 (454)
196 2q6t_A DNAB replication FORK h 91.2 1.1 3.8E-05 45.5 11.1 64 32-96 188-257 (444)
197 1u0j_A DNA replication protein 91.1 0.45 1.5E-05 44.8 7.2 35 32-66 91-127 (267)
198 3cmu_A Protein RECA, recombina 91.0 0.63 2.2E-05 55.7 9.9 47 33-79 1414-1466(2050)
199 1ofh_A ATP-dependent HSL prote 90.8 0.38 1.3E-05 45.9 6.7 34 43-76 50-83 (310)
200 2eyq_A TRCF, transcription-rep 90.2 0.45 1.5E-05 54.6 7.5 79 46-127 20-119 (1151)
201 2w58_A DNAI, primosome compone 89.8 0.47 1.6E-05 42.3 6.0 32 44-75 55-89 (202)
202 3u4q_A ATP-dependent helicase/ 89.7 0.33 1.1E-05 56.2 6.1 64 23-91 8-80 (1232)
203 1pzn_A RAD51, DNA repair and r 89.7 0.98 3.3E-05 44.4 8.7 47 32-78 118-175 (349)
204 1tue_A Replication protein E1; 89.6 0.3 1E-05 44.1 4.4 40 31-70 45-85 (212)
205 3lda_A DNA repair protein RAD5 89.6 1.6 5.3E-05 43.8 10.1 46 33-78 166-222 (400)
206 4a74_A DNA repair and recombin 89.0 0.65 2.2E-05 42.1 6.5 47 32-78 12-69 (231)
207 3te6_A Regulatory protein SIR3 88.8 0.31 1.1E-05 47.3 4.1 41 27-67 25-69 (318)
208 1lv7_A FTSH; alpha/beta domain 88.6 0.39 1.3E-05 44.8 4.6 32 43-74 45-76 (257)
209 1ypw_A Transitional endoplasmi 88.3 0.36 1.2E-05 53.2 4.8 33 43-75 238-270 (806)
210 1vma_A Cell division protein F 88.3 3.6 0.00012 39.5 11.4 31 45-75 106-139 (306)
211 2xxa_A Signal recognition part 88.1 7.5 0.00026 39.2 14.1 32 44-75 101-136 (433)
212 3hws_A ATP-dependent CLP prote 88.1 0.46 1.6E-05 46.9 5.0 33 44-76 52-84 (363)
213 3a8t_A Adenylate isopentenyltr 88.0 0.24 8.3E-06 48.3 2.8 25 44-68 41-65 (339)
214 3trf_A Shikimate kinase, SK; a 87.7 0.44 1.5E-05 41.8 4.2 28 44-71 6-33 (185)
215 2zts_A Putative uncharacterize 87.5 0.59 2E-05 43.0 5.2 56 34-90 19-80 (251)
216 2r44_A Uncharacterized protein 87.3 0.75 2.6E-05 44.6 6.0 46 28-75 33-78 (331)
217 1qhx_A CPT, protein (chloramph 87.2 0.61 2.1E-05 40.5 4.8 30 45-74 5-34 (178)
218 1ls1_A Signal recognition part 86.7 3.5 0.00012 39.3 10.3 31 45-75 100-133 (295)
219 2qgz_A Helicase loader, putati 86.5 0.48 1.6E-05 45.8 4.0 33 43-75 152-188 (308)
220 3cmw_A Protein RECA, recombina 86.3 1.6 5.5E-05 51.6 8.9 100 32-158 1417-1522(1706)
221 2r62_A Cell division protease 86.0 0.53 1.8E-05 44.0 4.0 31 43-73 44-74 (268)
222 3foz_A TRNA delta(2)-isopenten 85.5 0.58 2E-05 45.0 3.9 25 44-68 11-35 (316)
223 3pxg_A Negative regulator of g 85.2 0.86 2.9E-05 46.8 5.4 41 27-67 185-225 (468)
224 2ze6_A Isopentenyl transferase 85.0 0.65 2.2E-05 43.3 4.0 26 45-70 3-28 (253)
225 2c9o_A RUVB-like 1; hexameric 84.9 0.74 2.5E-05 47.1 4.7 34 43-76 63-98 (456)
226 3vaa_A Shikimate kinase, SK; s 84.5 0.83 2.8E-05 40.7 4.3 28 44-71 26-53 (199)
227 3exa_A TRNA delta(2)-isopenten 84.4 0.56 1.9E-05 45.2 3.3 32 45-78 5-36 (322)
228 1c9k_A COBU, adenosylcobinamid 84.2 0.81 2.8E-05 40.3 4.0 45 46-91 2-46 (180)
229 3cmw_A Protein RECA, recombina 84.2 2.3 7.7E-05 50.4 8.7 98 34-158 720-823 (1706)
230 1g41_A Heat shock protein HSLU 83.6 1 3.6E-05 45.6 5.0 34 43-76 50-83 (444)
231 3crm_A TRNA delta(2)-isopenten 83.4 0.69 2.4E-05 44.8 3.5 24 45-68 7-30 (323)
232 1ixz_A ATP-dependent metallopr 83.3 1.1 3.9E-05 41.4 4.9 32 44-75 50-81 (254)
233 2ffh_A Protein (FFH); SRP54, s 82.9 7 0.00024 39.3 10.8 31 45-75 100-133 (425)
234 2i1q_A DNA repair and recombin 82.6 2.3 7.9E-05 41.0 7.0 59 32-90 85-165 (322)
235 3kb2_A SPBC2 prophage-derived 82.5 1 3.5E-05 38.6 4.0 26 45-70 3-28 (173)
236 2x8a_A Nuclear valosin-contain 82.3 1.7 5.7E-05 41.0 5.7 32 44-75 45-76 (274)
237 1gm5_A RECG; helicase, replica 82.2 3.6 0.00012 45.0 8.9 76 267-343 416-501 (780)
238 1p9r_A General secretion pathw 82.0 2.4 8.3E-05 42.7 7.0 42 25-67 150-191 (418)
239 3iij_A Coilin-interacting nucl 81.8 1.1 3.9E-05 38.9 4.0 28 44-71 12-39 (180)
240 1j8m_F SRP54, signal recogniti 81.5 5.5 0.00019 38.0 9.1 32 45-76 100-134 (297)
241 3lw7_A Adenylate kinase relate 81.5 1.1 3.7E-05 38.3 3.8 26 45-71 3-28 (179)
242 2w0m_A SSO2452; RECA, SSPF, un 81.4 2.9 9.9E-05 37.6 6.9 56 33-89 11-71 (235)
243 3cmu_A Protein RECA, recombina 81.3 4.3 0.00015 48.8 9.7 99 32-158 369-474 (2050)
244 1zuh_A Shikimate kinase; alpha 81.0 1.3 4.3E-05 38.1 4.0 29 44-72 8-36 (168)
245 3bh0_A DNAB-like replicative h 80.9 3.8 0.00013 39.4 7.8 58 32-90 56-117 (315)
246 1iy2_A ATP-dependent metallopr 80.8 1.6 5.3E-05 41.2 4.9 32 44-75 74-105 (278)
247 2qmh_A HPR kinase/phosphorylas 80.6 0.89 3.1E-05 40.7 2.9 25 44-68 35-59 (205)
248 3d3q_A TRNA delta(2)-isopenten 80.4 1 3.5E-05 43.9 3.5 24 45-68 9-32 (340)
249 2iyv_A Shikimate kinase, SK; t 80.3 1.5 5.1E-05 38.2 4.3 26 45-70 4-29 (184)
250 2c95_A Adenylate kinase 1; tra 80.3 1.8 6.1E-05 38.0 4.8 26 45-70 11-36 (196)
251 1via_A Shikimate kinase; struc 79.8 1.4 4.7E-05 38.1 3.9 25 45-69 6-30 (175)
252 3pxi_A Negative regulator of g 79.2 2.2 7.6E-05 46.6 6.1 41 27-67 185-225 (758)
253 2rhm_A Putative kinase; P-loop 78.8 1.6 5.3E-05 38.3 4.0 27 44-70 6-32 (193)
254 1y63_A LMAJ004144AAA protein; 78.7 1.6 5.3E-05 38.3 3.9 23 44-66 11-33 (184)
255 1ex7_A Guanylate kinase; subst 78.6 1.8 6E-05 38.3 4.2 26 44-69 2-27 (186)
256 3be4_A Adenylate kinase; malar 78.4 1.3 4.4E-05 40.0 3.3 26 44-69 6-31 (217)
257 1kag_A SKI, shikimate kinase I 78.4 1.9 6.4E-05 37.0 4.3 25 45-69 6-30 (173)
258 3dl0_A Adenylate kinase; phosp 78.2 1.8 6.1E-05 38.9 4.2 26 45-70 2-27 (216)
259 1e6c_A Shikimate kinase; phosp 78.1 1.7 5.7E-05 37.3 3.9 26 45-70 4-29 (173)
260 3eph_A TRNA isopentenyltransfe 78.1 1.1 3.9E-05 44.7 3.0 24 45-68 4-27 (409)
261 1in4_A RUVB, holliday junction 78.0 3 0.0001 40.5 6.0 44 28-71 31-79 (334)
262 2fna_A Conserved hypothetical 77.9 3.4 0.00012 39.9 6.5 49 23-75 14-62 (357)
263 2oap_1 GSPE-2, type II secreti 77.8 2.2 7.6E-05 44.2 5.2 39 27-67 246-284 (511)
264 1aky_A Adenylate kinase; ATP:A 77.8 1.8 6E-05 39.1 4.0 26 44-69 5-30 (220)
265 1zd8_A GTP:AMP phosphotransfer 77.7 1.7 5.9E-05 39.4 4.0 26 44-69 8-33 (227)
266 2vhj_A Ntpase P4, P4; non- hyd 77.7 0.96 3.3E-05 43.8 2.2 32 45-76 125-156 (331)
267 3fb4_A Adenylate kinase; psych 77.5 1.8 6.1E-05 38.8 4.0 26 45-70 2-27 (216)
268 2dhr_A FTSH; AAA+ protein, hex 77.4 2.1 7.1E-05 44.2 4.9 33 44-76 65-97 (499)
269 3bs4_A Uncharacterized protein 77.2 5.3 0.00018 37.3 7.2 59 32-91 8-71 (260)
270 1e9r_A Conjugal transfer prote 77.1 2.6 8.8E-05 42.6 5.5 39 44-82 54-95 (437)
271 3cm0_A Adenylate kinase; ATP-b 77.1 1.7 5.9E-05 37.8 3.7 24 45-68 6-29 (186)
272 3dzd_A Transcriptional regulat 77.0 3.5 0.00012 40.7 6.2 26 145-170 222-247 (368)
273 1gvn_B Zeta; postsegregational 76.7 1.8 6.2E-05 41.1 4.0 32 44-75 34-65 (287)
274 2cdn_A Adenylate kinase; phosp 76.5 2 6.8E-05 38.1 4.0 26 45-70 22-47 (201)
275 3t61_A Gluconokinase; PSI-biol 76.5 2 6.9E-05 38.1 4.0 25 44-68 19-43 (202)
276 4eun_A Thermoresistant glucoki 76.5 2.1 7E-05 38.0 4.0 25 44-68 30-54 (200)
277 2pt5_A Shikimate kinase, SK; a 76.3 2.1 7.3E-05 36.5 4.0 27 45-71 2-28 (168)
278 1tev_A UMP-CMP kinase; ploop, 76.0 2 6.7E-05 37.6 3.8 25 45-69 5-29 (196)
279 1qf9_A UMP/CMP kinase, protein 75.9 1.9 6.5E-05 37.6 3.6 24 45-68 8-31 (194)
280 4a1f_A DNAB helicase, replicat 75.9 6.4 0.00022 38.3 7.6 56 32-88 34-93 (338)
281 1zp6_A Hypothetical protein AT 75.8 2.3 7.7E-05 37.2 4.1 31 44-74 10-40 (191)
282 1ak2_A Adenylate kinase isoenz 75.8 2.1 7.2E-05 39.1 4.0 26 44-69 17-42 (233)
283 2yhs_A FTSY, cell division pro 75.7 27 0.00091 35.8 12.4 30 45-74 295-327 (503)
284 2vli_A Antibiotic resistance p 75.0 1.7 5.8E-05 37.7 3.0 28 45-72 7-34 (183)
285 2bwj_A Adenylate kinase 5; pho 75.0 2.1 7.3E-05 37.6 3.7 24 45-68 14-37 (199)
286 3sr0_A Adenylate kinase; phosp 74.9 2.2 7.4E-05 38.4 3.7 24 46-69 3-26 (206)
287 1e4v_A Adenylate kinase; trans 74.7 2.3 7.7E-05 38.2 3.9 26 45-70 2-27 (214)
288 3a4m_A L-seryl-tRNA(SEC) kinas 74.7 2.9 9.9E-05 38.9 4.7 30 45-74 6-38 (260)
289 1zak_A Adenylate kinase; ATP:A 74.5 2 6.8E-05 38.8 3.5 26 44-69 6-31 (222)
290 1kht_A Adenylate kinase; phosp 74.5 1.7 5.9E-05 37.8 3.0 24 45-68 5-28 (192)
291 1nks_A Adenylate kinase; therm 74.5 2.5 8.7E-05 36.7 4.1 24 45-68 3-26 (194)
292 2p5t_B PEZT; postsegregational 74.4 1.8 6.1E-05 40.2 3.2 32 44-75 33-64 (253)
293 3umf_A Adenylate kinase; rossm 74.4 2.2 7.7E-05 38.7 3.7 25 44-68 30-54 (217)
294 2jaq_A Deoxyguanosine kinase; 74.3 2.2 7.7E-05 37.5 3.7 26 45-70 2-27 (205)
295 3bgw_A DNAB-like replicative h 74.3 3.6 0.00012 41.7 5.7 57 32-89 185-245 (444)
296 1ny5_A Transcriptional regulat 74.0 6.8 0.00023 38.8 7.5 93 44-170 161-256 (387)
297 2r2a_A Uncharacterized protein 73.8 2.8 9.5E-05 37.5 4.2 22 45-66 7-28 (199)
298 2bdt_A BH3686; alpha-beta prot 73.5 2.9 9.8E-05 36.6 4.2 25 45-69 4-28 (189)
299 1ukz_A Uridylate kinase; trans 73.4 2.7 9.1E-05 37.2 4.0 26 44-69 16-41 (203)
300 2z0h_A DTMP kinase, thymidylat 73.4 3.1 0.00011 36.4 4.4 29 46-74 3-34 (197)
301 2qen_A Walker-type ATPase; unk 72.6 5.4 0.00018 38.3 6.3 49 23-75 13-61 (350)
302 1ly1_A Polynucleotide kinase; 72.5 2.2 7.6E-05 36.7 3.1 21 45-65 4-24 (181)
303 2v54_A DTMP kinase, thymidylat 72.4 3.1 0.00011 36.7 4.1 31 44-74 5-36 (204)
304 2pez_A Bifunctional 3'-phospho 72.0 3.9 0.00013 35.3 4.7 31 44-74 6-39 (179)
305 3sxu_A DNA polymerase III subu 71.2 45 0.0015 28.0 13.3 116 254-408 26-146 (150)
306 2pbr_A DTMP kinase, thymidylat 71.1 3.9 0.00013 35.6 4.5 28 46-73 3-33 (195)
307 3tau_A Guanylate kinase, GMP k 70.9 2.7 9.3E-05 37.6 3.4 25 44-68 9-33 (208)
308 1g8p_A Magnesium-chelatase 38 70.9 2.7 9.1E-05 40.7 3.6 26 44-69 46-71 (350)
309 2px0_A Flagellar biosynthesis 70.8 4.2 0.00015 38.7 4.9 32 44-75 106-141 (296)
310 2qor_A Guanylate kinase; phosp 70.8 3.2 0.00011 36.9 3.9 25 44-68 13-37 (204)
311 1knq_A Gluconate kinase; ALFA/ 70.7 3.1 0.00011 35.7 3.7 25 44-68 9-33 (175)
312 3nwj_A ATSK2; P loop, shikimat 70.7 3.3 0.00011 38.5 4.0 27 44-70 49-75 (250)
313 3tlx_A Adenylate kinase 2; str 70.2 3.3 0.00011 38.1 3.9 26 43-68 29-54 (243)
314 2xb4_A Adenylate kinase; ATP-b 70.2 3.1 0.00011 37.6 3.7 24 45-68 2-25 (223)
315 2yvu_A Probable adenylyl-sulfa 70.1 3.8 0.00013 35.6 4.2 31 44-74 14-47 (186)
316 3u4q_B ATP-dependent helicase/ 69.9 4.2 0.00014 46.8 5.4 46 46-92 4-55 (1166)
317 3nbx_X ATPase RAVA; AAA+ ATPas 69.8 2.9 0.0001 43.1 3.7 24 45-68 43-66 (500)
318 1kgd_A CASK, peripheral plasma 69.7 3.3 0.00011 36.0 3.6 24 44-67 6-29 (180)
319 2grj_A Dephospho-COA kinase; T 68.8 3.7 0.00013 36.4 3.7 24 45-68 14-37 (192)
320 2j37_W Signal recognition part 68.5 8.6 0.00029 39.6 6.9 33 44-76 102-137 (504)
321 1cke_A CK, MSSA, protein (cyti 66.8 4 0.00014 36.7 3.7 24 45-68 7-30 (227)
322 1jjv_A Dephospho-COA kinase; P 66.7 4 0.00014 36.1 3.6 23 45-68 4-26 (206)
323 3uie_A Adenylyl-sulfate kinase 66.6 5.1 0.00018 35.4 4.3 24 44-67 26-49 (200)
324 3b85_A Phosphate starvation-in 66.5 5.5 0.00019 35.8 4.5 38 24-64 5-43 (208)
325 1zu4_A FTSY; GTPase, signal re 66.3 5.2 0.00018 38.6 4.5 31 45-75 107-140 (320)
326 1q57_A DNA primase/helicase; d 66.0 8.8 0.0003 39.5 6.5 55 33-88 231-290 (503)
327 1uf9_A TT1252 protein; P-loop, 66.0 4.7 0.00016 35.4 3.9 23 44-66 9-31 (203)
328 3m6a_A ATP-dependent protease 65.8 6.5 0.00022 41.0 5.5 31 44-74 109-139 (543)
329 3ake_A Cytidylate kinase; CMP 65.8 4.9 0.00017 35.4 4.0 24 45-68 4-27 (208)
330 3ney_A 55 kDa erythrocyte memb 65.6 4.4 0.00015 36.1 3.6 25 44-68 20-44 (197)
331 4ag6_A VIRB4 ATPase, type IV s 65.3 6.1 0.00021 39.1 5.0 36 44-79 36-74 (392)
332 1nlf_A Regulatory protein REPA 64.9 12 0.00041 34.9 6.8 46 44-90 31-89 (279)
333 2if2_A Dephospho-COA kinase; a 64.6 4.9 0.00017 35.5 3.7 23 45-68 3-25 (204)
334 2plr_A DTMP kinase, probable t 64.6 4.1 0.00014 36.0 3.2 25 45-69 6-30 (213)
335 2woo_A ATPase GET3; tail-ancho 64.6 7.4 0.00025 37.6 5.3 39 37-75 13-54 (329)
336 2ga8_A Hypothetical 39.9 kDa p 64.5 4.9 0.00017 39.4 3.9 30 39-68 20-49 (359)
337 4akg_A Glutathione S-transfera 64.1 7.6 0.00026 48.3 6.2 57 33-91 1259-1317(2695)
338 3a00_A Guanylate kinase, GMP k 63.4 5.3 0.00018 34.8 3.7 23 45-67 3-25 (186)
339 2gza_A Type IV secretion syste 63.4 6.4 0.00022 38.6 4.6 39 35-75 169-209 (361)
340 3jvv_A Twitching mobility prot 63.2 5.9 0.0002 38.9 4.3 33 33-66 114-146 (356)
341 3fdi_A Uncharacterized protein 63.1 6.3 0.00021 35.1 4.2 28 45-72 8-35 (201)
342 2eyu_A Twitching motility prot 62.4 4.3 0.00015 37.9 3.0 22 44-65 26-47 (261)
343 3iqw_A Tail-anchored protein t 62.0 8.5 0.00029 37.3 5.2 42 35-76 8-52 (334)
344 4akg_A Glutathione S-transfera 62.0 10 0.00035 47.2 6.8 53 23-77 624-679 (2695)
345 2j41_A Guanylate kinase; GMP, 62.0 4.9 0.00017 35.4 3.3 23 45-67 8-30 (207)
346 1lvg_A Guanylate kinase, GMP k 61.1 5.2 0.00018 35.4 3.2 24 44-67 5-28 (198)
347 1cr0_A DNA primase/helicase; R 60.9 7.8 0.00027 36.5 4.7 45 33-77 24-73 (296)
348 3oiy_A Reverse gyrase helicase 60.6 26 0.00089 34.5 8.7 74 266-340 62-147 (414)
349 3sfz_A APAF-1, apoptotic pepti 60.5 44 0.0015 38.1 11.8 44 23-66 125-170 (1249)
350 3tr0_A Guanylate kinase, GMP k 60.5 5 0.00017 35.3 3.0 23 45-67 9-31 (205)
351 1vht_A Dephospho-COA kinase; s 60.5 6.6 0.00022 35.1 3.8 23 45-68 6-28 (218)
352 1m7g_A Adenylylsulfate kinase; 60.3 9.1 0.00031 34.0 4.8 25 44-68 26-50 (211)
353 3r20_A Cytidylate kinase; stru 60.2 6.4 0.00022 36.1 3.7 24 45-68 11-34 (233)
354 2v3c_C SRP54, signal recogniti 60.1 4.9 0.00017 40.6 3.2 32 44-75 100-134 (432)
355 2wwf_A Thymidilate kinase, put 60.1 5.7 0.00019 35.1 3.3 24 44-67 11-34 (212)
356 3cio_A ETK, tyrosine-protein k 59.8 12 0.0004 35.6 5.7 31 45-75 106-140 (299)
357 1rz3_A Hypothetical protein rb 59.4 8.5 0.00029 34.0 4.4 30 45-74 24-56 (201)
358 3nwn_A Kinesin-like protein KI 59.3 7.1 0.00024 38.3 4.0 18 45-62 107-124 (359)
359 2h92_A Cytidylate kinase; ross 59.0 8.3 0.00028 34.3 4.3 25 45-69 5-29 (219)
360 1nn5_A Similar to deoxythymidy 59.0 6.2 0.00021 34.9 3.4 24 44-67 10-33 (215)
361 1byi_A Dethiobiotin synthase; 58.6 9.1 0.00031 34.2 4.5 30 47-76 6-38 (224)
362 1q3t_A Cytidylate kinase; nucl 58.0 8.1 0.00028 35.1 4.1 25 44-68 17-41 (236)
363 4e22_A Cytidylate kinase; P-lo 57.8 7.9 0.00027 35.7 4.0 25 45-69 29-53 (252)
364 3b9q_A Chloroplast SRP recepto 57.3 9.3 0.00032 36.4 4.5 31 45-75 102-135 (302)
365 3vkg_A Dynein heavy chain, cyt 57.2 11 0.00037 47.5 6.0 57 32-90 1295-1353(3245)
366 2oze_A ORF delta'; para, walke 57.1 13 0.00043 35.0 5.4 44 30-74 22-71 (298)
367 3asz_A Uridine kinase; cytidin 57.0 8.1 0.00028 34.2 3.8 24 45-68 8-31 (211)
368 3auy_A DNA double-strand break 57.0 5.7 0.00019 39.1 3.0 16 45-60 27-42 (371)
369 1rj9_A FTSY, signal recognitio 56.8 11 0.00039 35.9 5.0 32 44-75 103-137 (304)
370 1xjc_A MOBB protein homolog; s 56.8 11 0.00038 32.5 4.5 31 45-75 6-39 (169)
371 1uj2_A Uridine-cytidine kinase 56.5 7.4 0.00025 35.8 3.5 26 44-69 23-48 (252)
372 3dc4_A Kinesin-like protein NO 56.4 8.9 0.0003 37.4 4.2 16 45-60 97-112 (344)
373 1lkx_A Myosin IE heavy chain; 56.2 9.2 0.00032 41.0 4.6 34 31-64 82-115 (697)
374 2woj_A ATPase GET3; tail-ancho 56.2 11 0.00038 36.8 4.9 42 35-76 10-56 (354)
375 3e70_C DPA, signal recognition 56.0 16 0.00054 35.3 5.9 32 44-75 130-164 (328)
376 1ry6_A Internal kinesin; kines 55.8 7.2 0.00025 38.3 3.4 17 46-62 88-104 (360)
377 3vkg_A Dynein heavy chain, cyt 55.8 22 0.00074 45.0 8.2 54 25-80 585-641 (3245)
378 2bbw_A Adenylate kinase 4, AK4 55.8 7.5 0.00026 35.5 3.4 25 44-68 28-52 (246)
379 2ewv_A Twitching motility prot 55.6 6.4 0.00022 38.8 3.1 23 44-66 137-159 (372)
380 3tqf_A HPR(Ser) kinase; transf 55.6 7.4 0.00025 33.9 3.1 23 44-66 17-39 (181)
381 2v9p_A Replication protein E1; 55.3 5.1 0.00017 38.4 2.2 32 44-75 127-158 (305)
382 1svm_A Large T antigen; AAA+ f 55.3 14 0.00049 36.4 5.6 32 42-73 168-199 (377)
383 3io3_A DEHA2D07832P; chaperone 55.2 13 0.00043 36.3 5.1 43 34-76 9-56 (348)
384 2hf9_A Probable hydrogenase ni 55.2 13 0.00044 33.1 4.9 38 30-67 25-62 (226)
385 3zq6_A Putative arsenical pump 54.9 10 0.00035 36.4 4.4 32 45-76 16-50 (324)
386 2ehv_A Hypothetical protein PH 54.7 13 0.00043 33.7 4.8 35 44-78 31-69 (251)
387 1bg2_A Kinesin; motor protein, 54.7 9.8 0.00033 36.7 4.1 18 45-62 80-97 (325)
388 2pt7_A CAG-ALFA; ATPase, prote 54.6 7.7 0.00026 37.5 3.4 42 33-76 163-206 (330)
389 4anj_A Unconventional myosin-V 54.3 9.8 0.00034 42.8 4.6 36 30-65 131-166 (1052)
390 3gmt_A Adenylate kinase; ssgci 54.3 10 0.00035 34.6 3.9 26 45-70 10-35 (230)
391 1hyq_A MIND, cell division inh 53.9 12 0.0004 34.4 4.5 29 47-75 7-38 (263)
392 3bfv_A CAPA1, CAPB2, membrane 53.8 16 0.00053 34.2 5.4 31 45-75 84-118 (271)
393 1yrb_A ATP(GTP)binding protein 53.8 12 0.00039 34.4 4.4 31 45-75 16-48 (262)
394 4etp_A Kinesin-like protein KA 53.8 9.9 0.00034 37.9 4.1 16 46-61 144-159 (403)
395 2v26_A Myosin VI; calmodulin-b 53.7 10 0.00036 41.2 4.6 34 31-64 128-161 (784)
396 1v8k_A Kinesin-like protein KI 53.6 8.8 0.0003 38.3 3.7 18 45-62 157-174 (410)
397 2qt1_A Nicotinamide riboside k 53.4 7.6 0.00026 34.3 3.0 23 45-67 23-45 (207)
398 1w9i_A Myosin II heavy chain; 53.4 11 0.00037 40.9 4.6 33 32-64 161-193 (770)
399 4gp7_A Metallophosphoesterase; 53.4 6.3 0.00022 33.9 2.3 18 45-62 11-28 (171)
400 1ihu_A Arsenical pump-driving 53.4 12 0.00041 39.3 4.9 32 44-75 9-43 (589)
401 2ocp_A DGK, deoxyguanosine kin 53.3 10 0.00036 34.4 4.0 25 45-69 4-28 (241)
402 3p32_A Probable GTPase RV1496/ 53.2 26 0.0009 34.0 7.1 34 42-75 78-114 (355)
403 1g3q_A MIND ATPase, cell divis 53.2 11 0.00037 34.0 4.1 30 47-76 7-39 (237)
404 2nr8_A Kinesin-like protein KI 53.2 10 0.00035 37.1 4.0 16 47-62 108-123 (358)
405 3b6u_A Kinesin-like protein KI 53.2 10 0.00035 37.3 4.0 18 45-62 104-121 (372)
406 2f6r_A COA synthase, bifunctio 53.1 8.6 0.00029 36.2 3.4 23 45-68 77-99 (281)
407 3gbj_A KIF13B protein; kinesin 53.1 10 0.00035 37.1 4.0 16 46-61 96-111 (354)
408 2vvg_A Kinesin-2; motor protei 53.0 11 0.00037 36.9 4.1 17 45-61 92-108 (350)
409 2y65_A Kinesin, kinesin heavy 53.0 11 0.00036 37.1 4.1 18 45-62 87-104 (365)
410 1z6g_A Guanylate kinase; struc 52.8 14 0.0005 33.0 4.8 30 44-73 24-53 (218)
411 2wsm_A Hydrogenase expression/ 52.6 12 0.00039 33.3 4.1 46 30-75 17-64 (221)
412 1t5c_A CENP-E protein, centrom 52.4 11 0.00037 36.8 4.0 17 45-61 80-96 (349)
413 2og2_A Putative signal recogni 52.4 12 0.00042 36.6 4.5 31 45-75 159-192 (359)
414 3ug7_A Arsenical pump-driving 52.3 13 0.00044 36.2 4.7 31 45-75 28-61 (349)
415 2h58_A Kinesin-like protein KI 52.2 11 0.00039 36.4 4.1 26 35-61 74-99 (330)
416 3kta_A Chromosome segregation 52.2 10 0.00035 32.5 3.6 23 45-67 28-50 (182)
417 4a14_A Kinesin, kinesin-like p 52.1 11 0.00039 36.6 4.1 17 45-61 86-102 (344)
418 4db1_A Myosin-7; S1DC, cardiac 52.1 12 0.0004 40.8 4.6 35 30-64 158-192 (783)
419 1w7j_A Myosin VA; motor protei 52.1 12 0.00039 40.9 4.6 34 31-64 144-177 (795)
420 2ph1_A Nucleotide-binding prot 52.0 11 0.00038 34.7 4.0 29 47-75 23-54 (262)
421 1ltq_A Polynucleotide kinase; 52.0 12 0.00039 35.3 4.2 23 45-67 4-26 (301)
422 2zfi_A Kinesin-like protein KI 51.4 12 0.0004 36.9 4.1 18 45-62 92-109 (366)
423 3lre_A Kinesin-like protein KI 51.3 9.9 0.00034 37.2 3.6 17 45-61 108-124 (355)
424 3q9l_A Septum site-determining 50.9 12 0.00042 34.1 4.1 29 47-75 7-38 (260)
425 1z6t_A APAF-1, apoptotic prote 50.8 20 0.0007 37.3 6.3 42 23-64 125-168 (591)
426 3c8u_A Fructokinase; YP_612366 50.8 8.4 0.00029 34.2 2.8 24 44-67 23-46 (208)
427 2wbe_C Bipolar kinesin KRP-130 50.5 12 0.00042 36.8 4.2 18 45-62 103-120 (373)
428 1sq5_A Pantothenate kinase; P- 50.5 24 0.00083 33.4 6.2 23 45-67 82-104 (308)
429 1x88_A Kinesin-like protein KI 50.0 10 0.00036 37.1 3.5 17 46-62 92-108 (359)
430 1ypw_A Transitional endoplasmi 49.9 4.5 0.00016 44.4 1.0 29 43-71 511-539 (806)
431 1f2t_A RAD50 ABC-ATPase; DNA d 49.6 9.8 0.00034 31.9 2.9 18 45-62 25-42 (149)
432 3u06_A Protein claret segregat 49.5 12 0.00042 37.4 4.0 27 34-61 131-157 (412)
433 3f9v_A Minichromosome maintena 49.3 10 0.00034 40.0 3.5 24 45-68 329-352 (595)
434 2heh_A KIF2C protein; kinesin, 49.3 11 0.00038 37.3 3.6 18 45-62 137-154 (387)
435 4dzz_A Plasmid partitioning pr 49.0 12 0.0004 32.8 3.5 26 50-75 9-37 (206)
436 2owm_A Nckin3-434, related to 48.8 13 0.00045 37.5 4.1 18 45-62 139-156 (443)
437 2obl_A ESCN; ATPase, hydrolase 48.8 15 0.00053 35.7 4.5 38 31-68 59-96 (347)
438 1kk8_A Myosin heavy chain, str 48.2 12 0.00041 41.0 4.0 34 31-64 157-190 (837)
439 1ye8_A Protein THEP1, hypothet 48.2 11 0.00037 32.7 3.1 23 45-67 2-24 (178)
440 1gtv_A TMK, thymidylate kinase 47.7 5.9 0.0002 35.1 1.2 23 46-68 3-25 (214)
441 1dek_A Deoxynucleoside monopho 47.6 23 0.00079 32.4 5.3 43 46-90 4-46 (241)
442 3lnc_A Guanylate kinase, GMP k 47.5 7.2 0.00024 35.3 1.8 20 45-64 29-48 (231)
443 3tmk_A Thymidylate kinase; pho 46.9 20 0.00067 32.3 4.6 27 44-70 6-32 (216)
444 1g8x_A Myosin II heavy chain f 46.7 15 0.00051 41.3 4.5 34 31-64 160-193 (1010)
445 2ycu_A Non muscle myosin 2C, a 46.5 15 0.00051 41.2 4.5 34 31-64 134-167 (995)
446 1tf7_A KAIC; homohexamer, hexa 46.4 35 0.0012 35.1 7.1 54 33-87 269-327 (525)
447 3cob_A Kinesin heavy chain-lik 46.2 12 0.0004 36.9 3.1 15 47-61 84-98 (369)
448 1odf_A YGR205W, hypothetical 3 45.7 12 0.00041 35.4 3.1 23 45-67 33-55 (290)
449 4eaq_A DTMP kinase, thymidylat 45.7 13 0.00044 33.7 3.2 25 44-68 27-51 (229)
450 3k9g_A PF-32 protein; ssgcid, 45.7 12 0.00042 34.4 3.2 45 30-75 15-62 (267)
451 3la6_A Tyrosine-protein kinase 45.6 18 0.00063 34.0 4.4 31 45-75 94-128 (286)
452 4ddu_A Reverse gyrase; topoiso 45.5 46 0.0016 37.8 8.4 73 266-339 119-203 (1104)
453 2dfs_A Myosin-5A; myosin-V, in 45.4 16 0.00055 41.3 4.6 33 32-64 145-177 (1080)
454 3tqc_A Pantothenate kinase; bi 45.1 21 0.0007 34.4 4.7 22 46-67 95-116 (321)
455 3end_A Light-independent proto 45.0 20 0.00069 33.8 4.7 32 44-75 42-76 (307)
456 3kjh_A CO dehydrogenase/acetyl 45.0 14 0.00047 33.4 3.4 29 47-75 4-35 (254)
457 1znw_A Guanylate kinase, GMP k 44.8 14 0.00047 32.7 3.2 23 45-67 22-44 (207)
458 2f1r_A Molybdopterin-guanine d 44.1 8.3 0.00028 33.4 1.6 23 45-67 4-26 (171)
459 3zvl_A Bifunctional polynucleo 44.1 10 0.00035 38.0 2.4 25 44-68 259-283 (416)
460 3vr4_A V-type sodium ATPase ca 43.6 29 0.00098 36.2 5.7 45 31-75 220-264 (600)
461 3ice_A Transcription terminati 43.3 18 0.00061 35.9 3.9 41 26-66 157-197 (422)
462 3cwq_A Para family chromosome 42.9 22 0.00075 31.5 4.3 37 47-85 5-46 (209)
463 1goj_A Kinesin, kinesin heavy 42.8 21 0.00071 34.9 4.4 18 45-62 83-100 (355)
464 1f9v_A Kinesin-like protein KA 42.4 19 0.00067 35.0 4.1 16 46-61 88-103 (347)
465 3hdt_A Putative kinase; struct 42.4 18 0.00061 32.7 3.6 27 45-71 16-42 (223)
466 3ea0_A ATPase, para family; al 42.2 20 0.0007 32.2 4.1 29 47-75 9-41 (245)
467 1nij_A Hypothetical protein YJ 41.8 17 0.00059 34.7 3.6 34 45-78 6-40 (318)
468 1np6_A Molybdopterin-guanine d 41.8 16 0.00056 31.5 3.1 22 45-66 8-29 (174)
469 3bfn_A Kinesin-like protein KI 41.8 22 0.00074 35.2 4.3 33 28-61 77-117 (388)
470 1x6v_B Bifunctional 3'-phospho 41.7 22 0.00077 37.5 4.7 31 44-74 53-86 (630)
471 1s96_A Guanylate kinase, GMP k 41.6 19 0.00066 32.3 3.7 24 44-67 17-40 (219)
472 1wcv_1 SOJ, segregation protei 41.3 14 0.00047 34.0 2.7 26 50-75 14-42 (257)
473 2i3b_A HCR-ntpase, human cance 40.7 19 0.00065 31.5 3.4 21 45-65 3-23 (189)
474 2xj4_A MIPZ; replication, cell 40.5 18 0.00061 33.9 3.4 26 50-75 12-40 (286)
475 2afh_E Nitrogenase iron protei 39.7 24 0.00083 32.9 4.3 28 47-74 6-36 (289)
476 1cp2_A CP2, nitrogenase iron p 39.6 25 0.00084 32.3 4.3 27 48-74 6-35 (269)
477 3t0q_A AGR253WP; kinesin, alph 39.5 20 0.00069 34.9 3.7 15 47-61 90-104 (349)
478 3qks_A DNA double-strand break 39.4 18 0.00062 32.0 3.1 20 45-64 25-44 (203)
479 2axn_A 6-phosphofructo-2-kinas 39.0 25 0.00086 36.2 4.6 31 45-75 37-70 (520)
480 2ius_A DNA translocase FTSK; n 38.9 18 0.00062 37.2 3.4 22 44-65 168-189 (512)
481 3qf7_A RAD50; ABC-ATPase, ATPa 38.3 17 0.00059 35.6 3.0 16 45-60 25-40 (365)
482 2p6n_A ATP-dependent RNA helic 38.2 87 0.003 27.1 7.4 65 53-121 39-112 (191)
483 2jeo_A Uridine-cytidine kinase 38.1 20 0.00068 32.6 3.3 24 45-68 27-50 (245)
484 2rep_A Kinesin-like protein KI 38.0 24 0.00082 34.7 3.9 18 45-62 118-135 (376)
485 4i1u_A Dephospho-COA kinase; s 37.8 23 0.00077 31.8 3.5 24 45-69 11-34 (210)
486 3of5_A Dethiobiotin synthetase 36.7 32 0.0011 31.0 4.4 30 45-74 6-39 (228)
487 4edh_A DTMP kinase, thymidylat 36.4 22 0.00074 31.9 3.1 23 45-67 8-30 (213)
488 1g8f_A Sulfate adenylyltransfe 36.3 34 0.0012 35.2 4.9 42 27-68 377-420 (511)
489 3ld9_A DTMP kinase, thymidylat 36.1 25 0.00085 31.8 3.5 24 44-67 22-45 (223)
490 2iut_A DNA translocase FTSK; n 36.1 21 0.00071 37.3 3.3 23 44-66 215-237 (574)
491 2dyk_A GTP-binding protein; GT 36.0 21 0.00073 29.3 2.9 21 45-65 3-23 (161)
492 2vp4_A Deoxynucleoside kinase; 36.0 19 0.00065 32.4 2.8 29 45-74 22-50 (230)
493 2jgn_A DBX, DDX3, ATP-dependen 35.8 1.6E+02 0.0056 25.0 8.8 64 53-120 29-103 (185)
494 1htw_A HI0065; nucleotide-bind 35.6 26 0.0009 29.6 3.4 24 44-67 34-57 (158)
495 1yks_A Genome polyprotein [con 35.1 52 0.0018 32.9 6.1 55 63-121 172-231 (440)
496 3v9p_A DTMP kinase, thymidylat 34.8 31 0.0011 31.2 4.0 23 45-67 27-49 (227)
497 3fkq_A NTRC-like two-domain pr 34.5 29 0.001 33.9 4.1 26 50-75 151-179 (373)
498 2dpy_A FLII, flagellum-specifi 34.5 49 0.0017 33.2 5.8 38 31-68 145-182 (438)
499 1a7j_A Phosphoribulokinase; tr 34.4 15 0.00053 34.6 1.9 31 45-75 7-40 (290)
500 3qxc_A Dethiobiotin synthetase 34.2 38 0.0013 31.0 4.5 31 45-75 23-57 (242)
No 1
>2fwr_A DNA repair protein RAD25; DNA unwinding, XPB, DNA binding protein; HET: DNA; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.19 c.37.1.19 PDB: 2fzl_A*
Probab=100.00 E-value=1.3e-49 Score=419.38 Aligned_cols=342 Identities=30% Similarity=0.455 Sum_probs=282.8
Q ss_pred CCCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 19 ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 19 ~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.++..++|+|||.++++.++.++ ++++++|||+|||++++.++...++++|||||+++|+.||.++|.+| + ..
T Consensus 87 ~~~~~~~l~~~Q~~ai~~i~~~~---~~ll~~~TGsGKT~~~l~~i~~~~~~~Lvl~P~~~L~~Q~~~~~~~~-~---~~ 159 (472)
T 2fwr_A 87 YFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF-G---EE 159 (472)
T ss_dssp CCCCCCCBCHHHHHHHHHHTTTT---EEEEECCTTSCHHHHHHHHHHHHCSCEEEEESSHHHHHHHHHHGGGG-C---GG
T ss_pred cccCCCCcCHHHHHHHHHHHhcC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEECCHHHHHHHHHHHHhC-C---Cc
Confidence 45567899999999999988775 79999999999999999999999999999999999999999999995 3 35
Q ss_pred -EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEE
Q 010367 99 -ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGL 177 (512)
Q Consensus 99 -v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~L 177 (512)
+..++|+.+. ..+|+|+||+++... .+.+ ...|++||+||||++.++.|..++..+...++|+|
T Consensus 160 ~v~~~~g~~~~----~~~Ivv~T~~~l~~~----------~~~~-~~~~~liIvDEaH~~~~~~~~~~~~~~~~~~~l~l 224 (472)
T 2fwr_A 160 YVGEFSGRIKE----LKPLTVSTYDSAYVN----------AEKL-GNRFMLLIFDEVHHLPAESYVQIAQMSIAPFRLGL 224 (472)
T ss_dssp GEEEBSSSCBC----CCSEEEEEHHHHHHT----------HHHH-TTTCSEEEEETGGGTTSTTTHHHHHTCCCSEEEEE
T ss_pred ceEEECCCcCC----cCCEEEEEcHHHHHH----------HHHh-cCCCCEEEEECCcCCCChHHHHHHHhcCCCeEEEE
Confidence 8888888654 478999999988653 2233 25699999999999999999999999999999999
Q ss_pred cccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhc-------------------
Q 010367 178 TATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKEN------------------- 238 (512)
Q Consensus 178 TATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~------------------- 238 (512)
||||.++++....+..++||..+...+.++ ..+++.++.+..+.+++++.....|-....
T Consensus 225 SATp~~~~~~~~~l~~~~~~~~~~~~~~~l-~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 303 (472)
T 2fwr_A 225 TATFEREDGRHEILKEVVGGKVFELFPDSL-AGKHLAKYTIKRIFVPLAEDERVEYEKREKVYKQFLRARGITLRRAEDF 303 (472)
T ss_dssp ESCCCCTTSGGGSHHHHTCCEEEECCHHHH-TSCCCCSEEECCEEECCCHHHHHHTTTTTHHHHSCSSSCCCTTTCCSSS
T ss_pred ecCccCCCCHHHHHHHHhCCeEeecCHHHH-hcCcCCCeEEEEEEcCCCHHHHHHHHHHHHHHHHHHHhcCccccchhhH
Confidence 999999998888899999999999999998 677888888888888888765443210000
Q ss_pred -------------------hHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCCCceeCCCCH
Q 010367 239 -------------------SKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRKPMIYGATSH 299 (512)
Q Consensus 239 -------------------~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~~~i~g~~~~ 299 (512)
......+......|...+..++..+ .+.++||||+++..++.+++.|++..+||+++.
T Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~---~~~k~lvF~~~~~~~~~l~~~l~~~~~~g~~~~ 380 (472)
T 2fwr_A 304 NKIVMASGYDERAYEALRAWEEARRIAFNSKNKIRKLREILERH---RKDKIIIFTRHNELVYRISKVFLIPAITHRTSR 380 (472)
T ss_dssp TTTTTTTCCSSSSSTTTHHHHHHHHHHHSCSHHHHHHHHHHHHT---SSSCBCCBCSCHHHHHHHHHHTTCCBCCSSSCS
T ss_pred HHHHHHhccCHHHHHHHHHHHHHHHHhhcChHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHhCcceeeCCCCH
Confidence 0011122344566888888888764 488999999999999999999999999999999
Q ss_pred HHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEE
Q 010367 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFY 379 (512)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y 379 (512)
.+|.+++++|+++ +++|||+|+++++|+|+|++++||+++.++ |+..+.|++||+||.|+++ ..+++|
T Consensus 381 ~~R~~~~~~F~~g-~~~vLv~T~~~~~Gldlp~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~~k----------~~~~i~ 448 (472)
T 2fwr_A 381 EEREEILEGFRTG-RFRAIVSSQVLDEGIDVPDANVGVIMSGSG-SAREYIQRLGRILRPSKGK----------KEAVLY 448 (472)
T ss_dssp HHHHTHHHHHHHS-SCSBCBCSSCCCSSSCSCCBSEEEEECCSS-CCHHHHHHHHHSBCCCTTT----------CCEEEE
T ss_pred HHHHHHHHHHhCC-CCCEEEEcCchhcCcccccCcEEEEECCCC-CHHHHHHHHhhccCCCCCC----------ceEEEE
Confidence 9999999999997 999999999999999999999999998876 9999999999999999431 579999
Q ss_pred EEEeCCcHhhHHHHHHHHH
Q 010367 380 SLVSTDTQEMFYSTKRQQF 398 (512)
Q Consensus 380 ~lv~~~t~e~~~~~~r~~~ 398 (512)
.+++.+|.|+.++++|++.
T Consensus 449 ~lv~~~t~ee~~~~~r~~~ 467 (472)
T 2fwr_A 449 ELISRGTGEVNTARRRKNA 467 (472)
T ss_dssp EEEECSCC-----------
T ss_pred EEEeCCCchHHHHHHHHHh
Confidence 9999999999999888743
No 2
>3mwy_W Chromo domain-containing protein 1; SWI2/SNF2 ATPase, double chromodomains, hydrolase; HET: ATG; 3.70A {Saccharomyces cerevisiae}
Probab=100.00 E-value=1.1e-46 Score=419.94 Aligned_cols=349 Identities=17% Similarity=0.245 Sum_probs=271.9
Q ss_pred CCCCcHHHHHHHHHHHh-CCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 23 HAQPRPYQEKSLSKMFG-NGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~-~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..+|||||.+++++|+. ....++|||+++||+|||+++++++..+ .+++||||| ..|+.||.++|.+|+ +
T Consensus 234 ~~~Lr~yQ~egv~~l~~~~~~~~~~ILademGlGKT~~ai~~i~~l~~~~~~~~~~LIV~P-~sll~qW~~E~~~~~--p 310 (800)
T 3mwy_W 234 GGELRDFQLTGINWMAFLWSKGDNGILADEMGLGKTVQTVAFISWLIFARRQNGPHIIVVP-LSTMPAWLDTFEKWA--P 310 (800)
T ss_dssp SSCCCTHHHHHHHHHHHHHTTTCCEEECCCTTSSTTHHHHHHHHHHHHHHSCCSCEEEECC-TTTHHHHHHHHHHHS--T
T ss_pred CCCcCHHHHHHHHHHHHHhhcCCCEEEEeCCCcchHHHHHHHHHHHHHhcCCCCCEEEEEC-chHHHHHHHHHHHHC--C
Confidence 57999999999998752 1223489999999999999999988654 578999999 557999999999995 4
Q ss_pred CCcEEEEcCCcccc-----------------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 96 DDQICRFTSDSKER-----------------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 96 ~~~v~~~~~~~~~~-----------------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
...+.+++|..... .....+|+|+||+++... ...+....|++||+||||+++
T Consensus 311 ~~~v~~~~g~~~~r~~~~~~~~~~~~~~~~~~~~~~dvvitTy~~l~~~----------~~~l~~~~w~~vIvDEaH~lk 380 (800)
T 3mwy_W 311 DLNCICYMGNQKSRDTIREYEFYTNPRAKGKKTMKFNVLLTTYEYILKD----------RAELGSIKWQFMAVDEAHRLK 380 (800)
T ss_dssp TCCEEECCCSSHHHHHHHHHHSCSCC-----CCCCCSEEEECTTHHHHT----------HHHHHTSEEEEEEETTGGGGC
T ss_pred CceEEEEeCCHHHHHHHHHHHhhccccccccccccCCEEEecHHHHHhh----------HHHHhcCCcceeehhhhhhhc
Confidence 56788888765421 134578999999999754 345556789999999999997
Q ss_pred ch--HHHHHHHhcccceEEEEcccCCCCcchH-hhh-------------------------------HhhhCCceeeecH
Q 010367 159 AH--MFRKVISLTKSHCKLGLTATLVREDERI-TDL-------------------------------NFLIGPKLYEANW 204 (512)
Q Consensus 159 ~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l-------------------------------~~l~gp~~~~~~~ 204 (512)
+. .+.+.+..+++.++|+|||||.+++... ..+ ..+++|.+++...
T Consensus 381 n~~s~~~~~l~~l~~~~rl~LTgTPiqN~l~el~~ll~fL~p~~~~~~~~~~~~~~~~~~~~~~~~L~~~l~p~~lRR~k 460 (800)
T 3mwy_W 381 NAESSLYESLNSFKVANRMLITGTPLQNNIKELAALVNFLMPGRFTIDQEIDFENQDEEQEEYIHDLHRRIQPFILRRLK 460 (800)
T ss_dssp CSSSHHHHHHTTSEEEEEEEECSCCCSSCSHHHHHHHHHHCSCCC---------CCTTHHHHHHHHHHHTTGGGEEECCG
T ss_pred CchhHHHHHHHHhhhccEEEeeCCcCCCCHHHHHHHHHHhCccccCchhhhcccccchhHHHHHHHHHHHHhHHHhhhhH
Confidence 54 6677788889999999999998765331 122 2233344444443
Q ss_pred HHHHhCCCcccceeEEEEcCCCHHHHHHHH---Hhhch------------------HHHH--------------------
Q 010367 205 LDLVKGGFIANVQCAEVWCPMTKEFFSEYL---KKENS------------------KKKQ-------------------- 243 (512)
Q Consensus 205 ~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~------------------~~~~-------------------- 243 (512)
.++. ..+.+.....+++++++.....|. ..... ..+.
T Consensus 461 ~dv~--~~LP~k~~~~v~v~ls~~q~~~Y~~i~~~~~~~l~~~~~~~~~~~l~~l~~Lrk~~~hp~l~~~~~~~~~~~~~ 538 (800)
T 3mwy_W 461 KDVE--KSLPSKTERILRVELSDVQTEYYKNILTKNYSALTAGAKGGHFSLLNIMNELKKASNHPYLFDNAEERVLQKFG 538 (800)
T ss_dssp GGGT--TTSCCEEEEEEEECCCHHHHHHHHHHHHHCCC----------CTHHHHHHHHHHHHHCGGGSSSHHHHHCCCC-
T ss_pred Hhhh--hccCCcEEEEEEeCCCHHHHHHHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHhcChhhhcchHHHHHHhcc
Confidence 3332 246777788899999987644442 11000 0000
Q ss_pred ----------HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHH
Q 010367 244 ----------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQA 308 (512)
Q Consensus 244 ----------~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~ 308 (512)
.....++.|+.++..++..+. ..|+|+||||+++.+++.+...| .+..++|+++..+|.+++++
T Consensus 539 ~~~~~~~~~~~~l~~~s~K~~~L~~lL~~~~-~~g~kvLIFsq~~~~ld~L~~~L~~~g~~~~~i~G~~~~~eR~~~i~~ 617 (800)
T 3mwy_W 539 DGKMTRENVLRGLIMSSGKMVLLDQLLTRLK-KDGHRVLIFSQMVRMLDILGDYLSIKGINFQRLDGTVPSAQRRISIDH 617 (800)
T ss_dssp ---CCSHHHHHHHHHTCHHHHHHHHHHHHHT-TTTCCEEEEESCHHHHHHHHHHHHHHTCCCEEESTTSCHHHHHHHHHT
T ss_pred cccccHHHHHHHhhhcChHHHHHHHHHHHHh-hCCCeEEEEechHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHH
Confidence 011235679999999998887 78999999999999999999998 35579999999999999999
Q ss_pred hhCCC--CccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 309 FKCSR--DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 309 F~~~~--~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
|++++ ...+|++|++|++|||+|.|++||+++++| ||..+.||+||+||+| |.+++.+|.|++.+|
T Consensus 618 F~~~~~~~~v~LlSt~agg~GlNL~~a~~VI~~D~~w-np~~~~Qa~gR~~RiG-----------Q~k~V~Vyrlv~~~T 685 (800)
T 3mwy_W 618 FNSPDSNDFVFLLSTRAGGLGINLMTADTVVIFDSDW-NPQADLQAMARAHRIG-----------QKNHVMVYRLVSKDT 685 (800)
T ss_dssp TSSTTCSCCCEEEEHHHHTTTCCCTTCCEEEESSCCS-CSHHHHHHHTTTSCSS-----------CCSCEEEEEEEETTS
T ss_pred hhCCCCCceEEEEecccccCCCCccccceEEEecCCC-ChhhHHHHHHHHHhcC-----------CCceEEEEEEecCCC
Confidence 99862 235888899999999999999999999987 9999999999999999 556799999999999
Q ss_pred HhhHHHHHHHHHH
Q 010367 387 QEMFYSTKRQQFL 399 (512)
Q Consensus 387 ~e~~~~~~r~~~l 399 (512)
+|+.+..+..+++
T Consensus 686 iEe~i~~~~~~K~ 698 (800)
T 3mwy_W 686 VEEEVLERARKKM 698 (800)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHH
Confidence 9999987776665
No 3
>1z63_A Helicase of the SNF2/RAD54 hamily; protein-DNA complex, hydrolase/DNA complex complex; 3.00A {Sulfolobus solfataricus} SCOP: c.37.1.19 c.37.1.19 PDB: 1z6a_A
Probab=100.00 E-value=4e-46 Score=395.53 Aligned_cols=346 Identities=21% Similarity=0.268 Sum_probs=258.3
Q ss_pred CCCCCCCcHHHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 20 LKPHAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.....+|||||.++++++. ..+ ++++++++||+|||++++.++..+ .+++|||||+ .|+.||.++|.+|
T Consensus 32 ~~~~~~L~~~Q~~~v~~l~~~~~~~--~~~ilad~~GlGKT~~ai~~i~~~~~~~~~~~~LIv~P~-~l~~qw~~e~~~~ 108 (500)
T 1z63_A 32 YNIKANLRPYQIKGFSWMRFMNKLG--FGICLADDMGLGKTLQTIAVFSDAKKENELTPSLVICPL-SVLKNWEEELSKF 108 (500)
T ss_dssp CSCSSCCCHHHHHHHHHHHHHHHTT--CCEEECCCTTSCHHHHHHHHHHHHHHTTCCSSEEEEECS-TTHHHHHHHHHHH
T ss_pred hhhhccchHHHHHHHHHHHHHhhCC--CCEEEEeCCCCcHHHHHHHHHHHHHhcCCCCCEEEEccH-HHHHHHHHHHHHH
Confidence 3345789999999999874 233 489999999999999999888664 2689999995 5899999999999
Q ss_pred hCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHHHhc
Q 010367 92 STIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLT 169 (512)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~ 169 (512)
+ +...+.+++++.........+|+|+||+++.... .+....|++||+||||++++. ...+.+..+
T Consensus 109 ~--~~~~v~~~~g~~~~~~~~~~~ivi~t~~~l~~~~-----------~l~~~~~~~vIvDEaH~~kn~~~~~~~~l~~l 175 (500)
T 1z63_A 109 A--PHLRFAVFHEDRSKIKLEDYDIILTTYAVLLRDT-----------RLKEVEWKYIVIDEAQNIKNPQTKIFKAVKEL 175 (500)
T ss_dssp C--TTSCEEECSSSTTSCCGGGSSEEEEEHHHHTTCH-----------HHHTCCEEEEEEETGGGGSCTTSHHHHHHHTS
T ss_pred C--CCceEEEEecCchhccccCCcEEEeeHHHHhccc-----------hhcCCCcCEEEEeCccccCCHhHHHHHHHHhh
Confidence 5 3457888888764433456889999999997641 144578999999999999875 355667777
Q ss_pred ccceEEEEcccCCCCcchH-hh----------------------------------hHhhhCCceeeecHHHHHhCCCcc
Q 010367 170 KSHCKLGLTATLVREDERI-TD----------------------------------LNFLIGPKLYEANWLDLVKGGFIA 214 (512)
Q Consensus 170 ~~~~~l~LTATp~~~~~~~-~~----------------------------------l~~l~gp~~~~~~~~~l~~~~~l~ 214 (512)
.+.++++|||||.+++... .. +..++.|..++....+......+.
T Consensus 176 ~~~~~l~LTaTP~~n~~~el~~ll~~l~p~~~~~~~~f~~~~~~~~~~~~~~~~~~l~~~l~~~~lrr~k~~~~~~~~lp 255 (500)
T 1z63_A 176 KSKYRIALTGTPIENKVDDLWSIMTFLNPGLLGSYSEFKSKFATPIKKGDNMAKEELKAIISPFILRRTKYDKAIINDLP 255 (500)
T ss_dssp CEEEEEEECSSCSTTCHHHHHHHHHHHSTTTTCCHHHHHTTTHHHHHTTCHHHHHHHHHHHTTTEECCCTTCHHHHTTSC
T ss_pred ccCcEEEEecCCCCCCHHHHHHHHHHhCCCcCCCHHHHHHHhccccccccHHHHHHHHHHHhhHeeeecccccchhhcCC
Confidence 8889999999999865321 12 222333443333322211123566
Q ss_pred cceeEEEEcCCCHHHHHHHHHhhch------------H----------HHHHH-----------hhcCcchHHHHHHHHH
Q 010367 215 NVQCAEVWCPMTKEFFSEYLKKENS------------K----------KKQAL-----------YVMNPNKFRACEFLIR 261 (512)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~l~~~~~------------~----------~~~~~-----------~~~~~~k~~~l~~ll~ 261 (512)
+.....+++++++.....|...... . .++.. ....+.|+..+..++.
T Consensus 256 ~~~~~~v~~~l~~~~~~~y~~~~~~~~~~~~~~~~~~~~~~~~~~l~~lr~~~~~p~l~~~~~~~~~~s~K~~~l~~~l~ 335 (500)
T 1z63_A 256 DKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTMEIIE 335 (500)
T ss_dssp SEEEEEEEECCCHHHHHHHHHHHHHHTTTTTTCCTHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHHHHH
T ss_pred CCeEEEEEcCCCHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHhCCHHHhcCccchhhcchhHHHHHHHHH
Confidence 6777888999998765544311000 0 00000 0123568888888887
Q ss_pred HhhhcCCCeEEEEecCHHHHHHHHHHh------CCCceeCCCCHHHHHHHHHHhhCCCCcc-EEEEeCCCcccccCcccc
Q 010367 262 FHEQQRGDKIIVFADNLFALTEYAMKL------RKPMIYGATSHVERTKILQAFKCSRDLN-TIFLSKVGDNSIDIPEAN 334 (512)
Q Consensus 262 ~~~~~~g~k~iVf~~~~~~~~~l~~~L------~~~~i~g~~~~~eR~~il~~F~~~~~~~-vlv~t~~~~~GlDlp~~~ 334 (512)
... ..+.|+||||+++..++.++..| ++..+||+++..+|.+++++|++++..+ +|++|+++++|+|+|.++
T Consensus 336 ~~~-~~~~k~lvF~~~~~~~~~l~~~l~~~~~~~~~~~~g~~~~~~R~~~~~~F~~~~~~~vil~st~~~~~Glnl~~~~ 414 (500)
T 1z63_A 336 EAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLTSAN 414 (500)
T ss_dssp HHH-TTTCCEEEECSCHHHHHHHHHHHHHHHTCCCCEEETTSCHHHHHHHHHHHHHCTTCCCCEEECCCC-CCCCCTTCS
T ss_pred HHH-ccCCcEEEEEehHHHHHHHHHHHHHhhCCCeEEEECCCCHHHHHHHHHHhcCCCCCCEEEEecccccCCCchhhCC
Confidence 766 67899999999999999988877 3467999999999999999999975565 677899999999999999
Q ss_pred EEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHH
Q 010367 335 VIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (512)
Q Consensus 335 ~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (512)
+||+++++| |+..+.|++||++|.| |.+.+.+|.+++.+|+|+.+...
T Consensus 415 ~vi~~d~~~-~~~~~~Q~~gR~~R~G-----------q~~~v~v~~lv~~~tiee~i~~~ 462 (500)
T 1z63_A 415 RVIHFDRWW-NPAVEDQATDRVYRIG-----------QTRNVIVHKLISVGTLEEKIDQL 462 (500)
T ss_dssp EEEESSCCS-CC---CHHHHTTTTTT-----------TTSCEEEEEEEETTSHHHHTHHH
T ss_pred EEEEeCCCC-CcchHHHHHHHHHHcC-----------CCCeeEEEEEEeCCCHHHHHHHH
Confidence 999999887 9999999999999999 55579999999999999976543
No 4
>1z3i_X Similar to RAD54-like; recombination ATPase helicase, recombination-DNA binding COM; 3.00A {Danio rerio} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=7.9e-45 Score=395.40 Aligned_cols=351 Identities=17% Similarity=0.237 Sum_probs=258.4
Q ss_pred CCCCcHHHHHHHHHHHhC------CCCcceEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEEcChhhHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGN------GRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAF 86 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~------~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~ 86 (512)
...|||||.+++.+++.. ...++|||+++||+|||+++++++..+ .+++|||||+ .|+.||.+
T Consensus 53 ~~~LrpyQ~~gv~~l~~~~~~~~~~~~~g~ILad~mGlGKT~~~i~~i~~l~~~~~~~~p~~~~~LiV~P~-sll~qW~~ 131 (644)
T 1z3i_X 53 SKVLRPHQREGVKFLWDCVTGRRIENSYGCIMADEMGLGKTLQCITLIWTLLKQSPDCKPEIDKVIVVSPS-SLVRNWYN 131 (644)
T ss_dssp HTTCCHHHHHHHHHHHHHHTTSSSTTCCEEEECCCTTSCHHHHHHHHHHHHHHCCTTSSCSCSCEEEEECH-HHHHHHHH
T ss_pred hhcccHHHHHHHHHHHHhhhcccccCCCCeEeeeCCCchHHHHHHHHHHHHHHhCccccCCCCcEEEEecH-HHHHHHHH
Confidence 468999999999998641 223589999999999999999998654 1369999996 57999999
Q ss_pred HHHHhhCCCCCcEEEEcCCccccc-------------cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcC
Q 010367 87 QFKLWSTIQDDQICRFTSDSKERF-------------RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDE 153 (512)
Q Consensus 87 ~~~~~~~~~~~~v~~~~~~~~~~~-------------~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDE 153 (512)
+|.+|++. ...+..+.++.+... ....+|+|+||+++... ...+....|++||+||
T Consensus 132 E~~~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~vvi~ty~~l~~~----------~~~l~~~~~~~vI~DE 200 (644)
T 1z3i_X 132 EVGKWLGG-RVQPVAIDGGSKDEIDSKLVNFISQQGMRIPTPILIISYETFRLH----------AEVLHKGKVGLVICDE 200 (644)
T ss_dssp HHHHHHGG-GCCEEEECSSCHHHHHHHHHHHHCCCSSCCSCCEEEEEHHHHHHH----------TTTTTTSCCCEEEETT
T ss_pred HHHHHcCC-CeeEEEEeCCCHHHHHHHHHHHHHhcCCCCCCcEEEeeHHHHHhh----------HHHhhcCCccEEEEEC
Confidence 99999754 234455555432210 12478999999998753 2344457899999999
Q ss_pred CCCCCch--HHHHHHHhcccceEEEEcccCCCCcchH-hhhHhhhCC---------------------------------
Q 010367 154 VHVVPAH--MFRKVISLTKSHCKLGLTATLVREDERI-TDLNFLIGP--------------------------------- 197 (512)
Q Consensus 154 aH~~~~~--~~~~~l~~~~~~~~l~LTATp~~~~~~~-~~l~~l~gp--------------------------------- 197 (512)
||++++. ...+.+..+.+.++|+|||||.+++..+ ..+..++.|
T Consensus 201 aH~ikn~~~~~~~al~~l~~~~rl~LTgTPiqN~l~El~sll~fl~p~~l~~~~~F~~~f~~pi~~~~~~~~~~~~~~~~ 280 (644)
T 1z3i_X 201 GHRLKNSDNQTYLALNSMNAQRRVLISGTPIQNDLLEYFSLVHFVNSGILGTAQEFKKRFEIPILKGRDADASDKDRAAG 280 (644)
T ss_dssp GGGCCTTCHHHHHHHHHHCCSEEEEECSSCSGGGGGGCHHHHHHHHHHHHCCHHHHHHHTHHHHHHHHSTTCCSHHHHHH
T ss_pred ceecCChhhHHHHHHHhcccCcEEEEecCcccCCHHHHHHHHHhhCCCcCCCHHHHHHhhcchhhhcCCcCCCHHHHHHH
Confidence 9999865 4445666778999999999999876331 122222222
Q ss_pred -------------ceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHH---Hhhch------------------HHHH
Q 010367 198 -------------KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYL---KKENS------------------KKKQ 243 (512)
Q Consensus 198 -------------~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l---~~~~~------------------~~~~ 243 (512)
.+.+....++. ..+.+.....++|++++.....|- ..... ..++
T Consensus 281 ~~~~~~L~~~l~~~~lRR~k~~v~--~~LP~k~~~~v~~~ls~~q~~lY~~~~~~~~~~~~~~~g~~~~~~l~~l~~Lrk 358 (644)
T 1z3i_X 281 EQKLQELISIVNRCLIRRTSDILS--KYLPVKIEQVVCCNLTPLQKELYKLFLKQAKPVESLQTGKISVSSLSSITSLKK 358 (644)
T ss_dssp HHHHHHHHHHHHHHEECCCGGGGG--GTSCCEEEEEEEECCCHHHHHHHHHHHHHHCGGGSSCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHHhHh--hhCCCceEEEEEeCCCHHHHHHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHH
Confidence 22222211111 246667778899999987644332 11100 0000
Q ss_pred H------Hh---------------------------hcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh--
Q 010367 244 A------LY---------------------------VMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-- 288 (512)
Q Consensus 244 ~------~~---------------------------~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-- 288 (512)
. +. ...++|+.++..++.......++|+||||+++..++.++..|
T Consensus 359 ~c~hp~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~K~~~l~~ll~~~~~~~~~k~lIFs~~~~~~~~l~~~l~~ 438 (644)
T 1z3i_X 359 LCNHPALIYEKCLTGEEGFDGALDLFPQNYSTKAVEPQLSGKMLVLDYILAMTRTTTSDKVVLVSNYTQTLDLFEKLCRN 438 (644)
T ss_dssp HHHCTHHHHHHHHHTCTTCTTGGGTSCSSCCSSSCCGGGSHHHHHHHHHHHHHHHHCCCEEEEEESCHHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHhcccchhhhHHhhccccccccccCcccChHHHHHHHHHHHHhhcCCCEEEEEEccHHHHHHHHHHHHH
Confidence 0 00 012457888888887765356899999999999999999888
Q ss_pred -C--CCceeCCCCHHHHHHHHHHhhCCCC--ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCc
Q 010367 289 -R--KPMIYGATSHVERTKILQAFKCSRD--LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKL 363 (512)
Q Consensus 289 -~--~~~i~g~~~~~eR~~il~~F~~~~~--~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~ 363 (512)
+ ...+||+++..+|.+++++|++++. ..+|++|+++++|||+|.|++||++++|| |+..+.|++||++|.|
T Consensus 439 ~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~~v~L~st~a~g~Glnl~~a~~Vi~~d~~w-np~~~~Qa~gR~~R~G--- 514 (644)
T 1z3i_X 439 RRYLYVRLDGTMSIKKRAKIVERFNNPSSPEFIFMLSSKAGGCGLNLIGANRLVMFDPDW-NPANDEQAMARVWRDG--- 514 (644)
T ss_dssp HTCCEEEECSSCCHHHHHHHHHHHHSTTCCCCEEEEEGGGSCTTCCCTTEEEEEECSCCS-SHHHHHHHHTTSSSTT---
T ss_pred CCCCEEEEeCCCCHHHHHHHHHHhcCCCCCcEEEEEecccccCCcccccCCEEEEECCCC-CccHHHHHHHhhhhcC---
Confidence 3 3468999999999999999999732 24788899999999999999999999887 9999999999999999
Q ss_pred cccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHH
Q 010367 364 EDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (512)
Q Consensus 364 ~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (512)
|.+.+++|++++.+|+|+.+......+.
T Consensus 515 --------q~~~v~v~~lv~~~tiEe~i~~~~~~K~ 542 (644)
T 1z3i_X 515 --------QKKTCYIYRLLSTGTIEEKILQRQAHKK 542 (644)
T ss_dssp --------CCSCEEEEEEEETTSHHHHHHHHHHHHH
T ss_pred --------CCCceEEEEEEECCCHHHHHHHHHHHHH
Confidence 5567999999999999998886655554
No 5
>2oca_A DAR protein, ATP-dependent DNA helicase UVSW; ATP-dependant helicase, T4-bacteriophage, recombination, hydrolase; 2.70A {Enterobacteria phage T4}
Probab=100.00 E-value=8.2e-43 Score=371.01 Aligned_cols=336 Identities=18% Similarity=0.212 Sum_probs=255.9
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.++|+|||.+|++.++.+. ++++++|||+|||++++.++.. .++++|||||+++|+.||.++|.+|...+...
T Consensus 111 ~~~l~~~Q~~ai~~~~~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~~~~~~~~~~~ 187 (510)
T 2oca_A 111 RIEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAM 187 (510)
T ss_dssp EECCCHHHHHHHHHHHHHS---EEEEECCSTTTHHHHHHHHHHHHHHHCSSEEEEEESSHHHHHHHHHHHHHTTSSCGGG
T ss_pred CCCCCHHHHHHHHHHHhcC---CcEEEeCCCCCHHHHHHHHHHHHHhCCCCeEEEEECcHHHHHHHHHHHHHhhcCCccc
Confidence 4599999999999998874 8999999999999999887765 23499999999999999999999997666667
Q ss_pred EEEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc-ccceEE
Q 010367 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKL 175 (512)
Q Consensus 99 v~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~-~~~~~l 175 (512)
+..++++.... .....+|+|+||+.+..... .. ..++++||+||||++.++.+..++..+ ...++|
T Consensus 188 v~~~~~~~~~~~~~~~~~~I~i~T~~~l~~~~~---------~~--~~~~~liIiDE~H~~~~~~~~~il~~~~~~~~~l 256 (510)
T 2oca_A 188 IKKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EW--FSQFGMMMNDECHLATGKSISSIISGLNNCMFKF 256 (510)
T ss_dssp EEECGGGCCTTGGGCTTCSEEEEEHHHHTTSCG---------GG--GGGEEEEEEETGGGCCHHHHHHHGGGCTTCCEEE
T ss_pred eEEEecCCccccccccCCcEEEEeHHHHhhchh---------hh--hhcCCEEEEECCcCCCcccHHHHHHhcccCcEEE
Confidence 88888774431 23678999999998875421 11 257899999999999999999888877 566899
Q ss_pred EEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHH
Q 010367 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255 (512)
Q Consensus 176 ~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~ 255 (512)
+|||||.+.......+..++++..+.....++++.+++.++.+..+.+.++.......- ................+...
T Consensus 257 ~lSATp~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 335 (510)
T 2oca_A 257 GLSGSLRDGKANIMQYVGMFGEIFKPVTTSKLMEDGQVTELKINSIFLRYPDEFTTKLK-GKTYQEEIKIITGLSKRNKW 335 (510)
T ss_dssp EEESCGGGCSSCHHHHHHHHCSEECCCCCC---------CCEEEEEEEECCHHHHHHHT-TCCHHHHHHHHHTCHHHHHH
T ss_pred EEEeCCCCCcccHHHhHHhhCCeEEeeCHHHHhhCCcCCCceEEEEeecCChHHhcccc-ccchHHHHHHHhccHHHHHH
Confidence 99999977665555667789999999999999999999999998888887765442110 00111111112223344455
Q ss_pred HHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEe-CCCccccc
Q 010367 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLS-KVGDNSID 329 (512)
Q Consensus 256 l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t-~~~~~GlD 329 (512)
+..++.......+.++|||++ +..++.+++.|. +..+||+++..+|.++++.|+++ +++|||+| +++++|+|
T Consensus 336 l~~~l~~~~~~~~~~~ivf~~-~~~~~~l~~~L~~~~~~v~~~~g~~~~~~r~~i~~~f~~g-~~~vLv~T~~~~~~GiD 413 (510)
T 2oca_A 336 IAKLAIKLAQKDENAFVMFKH-VSHGKAIFDLIKNEYDKVYYVSGEVDTETRNIMKTLAENG-KGIIIVASYGVFSTGIS 413 (510)
T ss_dssp HHHHHHHHHTTTCEEEEEESS-HHHHHHHHHHHHTTCSSEEEESSSTTHHHHHHHHHHHHHC-CSCEEEEEHHHHHHSCC
T ss_pred HHHHHHHHHhcCCCeEEEEec-HHHHHHHHHHHHHcCCCeEEEECCCCHHHHHHHHHHHhCC-CCCEEEEEcChhhcccc
Confidence 555554443134556677776 888999999983 35799999999999999999997 89999999 99999999
Q ss_pred CccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 330 IPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 330 lp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
+|++++||+++.++ |+..+.|++||+||.|+++ ..+.+|++++..+
T Consensus 414 ip~v~~vi~~~~~~-s~~~~~Q~~GR~gR~g~~~----------~~v~i~~~~~~~~ 459 (510)
T 2oca_A 414 VKNLHHVVLAHGVK-SKIIVLQTIGRVLRKHGSK----------TIATVWDLIDDAG 459 (510)
T ss_dssp CCSEEEEEESSCCC-SCCHHHHHHHHHHTTTCCC----------CCCEEEEEEEECC
T ss_pred cccCcEEEEeCCCC-CHHHHHHHHhcccccCCCC----------ceEEEEEeecchh
Confidence 99999999998886 9999999999999999632 3689999888554
No 6
>1wp9_A ATP-dependent RNA helicase, putative; ATPase, DNA replication, DNA repair, DNA recombina hydrolase; 2.90A {Pyrococcus furiosus} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=3.6e-42 Score=361.81 Aligned_cols=344 Identities=23% Similarity=0.264 Sum_probs=243.8
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.++|||||.+++.+++.+ ++++++|||+|||++++.++... .+++|||||+++|+.||.++|.+|++.+...
T Consensus 7 ~~~l~~~Q~~~i~~~~~~----~~ll~~~tG~GKT~~~~~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~ 82 (494)
T 1wp9_A 7 LIQPRIYQEVIYAKCKET----NCLIVLPTGLGKTLIAMMIAEYRLTKYGGKVLMLAPTKPLVLQHAESFRRLFNLPPEK 82 (494)
T ss_dssp HHCCCHHHHHHHHHGGGS----CEEEECCTTSCHHHHHHHHHHHHHHHSCSCEEEECSSHHHHHHHHHHHHHHBCSCGGG
T ss_pred CCCccHHHHHHHHHHhhC----CEEEEcCCCCCHHHHHHHHHHHHHhcCCCeEEEEECCHHHHHHHHHHHHHHhCcchhh
Confidence 468999999999998876 79999999999999999888664 6799999999999999999999998877778
Q ss_pred EEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHHHHHHh----c
Q 010367 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFRKVISL----T 169 (512)
Q Consensus 99 v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~~~l~~----~ 169 (512)
+..++|+.... ....++|+|+||+++.....+ ..+....|++||+||||++.+. .+..+... .
T Consensus 83 v~~~~g~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~~~~~~~ 154 (494)
T 1wp9_A 83 IVALTGEKSPEERSKAWARAKVIVATPQTIENDLLA--------GRISLEDVSLIVFDEAHRAVGNYAYVFIAREYKRQA 154 (494)
T ss_dssp EEEECSCSCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSCCTTSCSEEEEETGGGCSTTCHHHHHHHHHHHHC
T ss_pred eEEeeCCcchhhhhhhccCCCEEEecHHHHHHHHhc--------CCcchhhceEEEEECCcccCCCCcHHHHHHHHHhcC
Confidence 99999875432 123578999999998753211 1223468999999999999864 44443333 3
Q ss_pred ccceEEEEcccCCCCcchHhhhHhhhCCceeeec-HHHHHhCCCcccceeEEEEcCCCHHHHHH----------------
Q 010367 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEAN-WLDLVKGGFIANVQCAEVWCPMTKEFFSE---------------- 232 (512)
Q Consensus 170 ~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~-~~~l~~~~~l~~~~~~~~~~~~~~~~~~~---------------- 232 (512)
+..++++|||||.++......+...++....... ..+..-..++.+.........++.....-
T Consensus 155 ~~~~~l~lTaTp~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 234 (494)
T 1wp9_A 155 KNPLVIGLTASPGSTPEKIMEVINNLGIEHIEYRSENSPDVRPYVKGIRFEWVRVDLPEIYKEVRKLLREMLRDALKPLA 234 (494)
T ss_dssp SSCCEEEEESCSCSSHHHHHHHHHHTTCCEEEECCTTSTTTGGGCCCCCEEEEEECCCHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEecCCCCCcHHHHHHHHhcChheeeccCCCcHHHHHhcCCCceeEEecCCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 4568999999999554444445444443221110 00000011222222233333333221100
Q ss_pred -----------------------------------------------------------------HHHhh----------
Q 010367 233 -----------------------------------------------------------------YLKKE---------- 237 (512)
Q Consensus 233 -----------------------------------------------------------------~l~~~---------- 237 (512)
|+...
T Consensus 235 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 314 (494)
T 1wp9_A 235 ETGLLESSSPDIPKKEVLRAGQIINEEMAKGNHDLRGLLLYHAMALKLHHAIELLETQGLSALRAYIKKLYEEAKAGSTK 314 (494)
T ss_dssp HHTSSSCCCTTSCHHHHHHHHHHHHHHHTTTCCSTTTHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTCCH
T ss_pred HhccccccCCCcchhHHHHHHHHHHHHhhccccchhhHHHHHHHHHHHHHHHHHHHhhcHHHHHHHHHHHHHhhccccch
Confidence 00000
Q ss_pred -------chHHHH--------HHhhcCcchHHHHHHHHHHhh-hcCCCeEEEEecCHHHHHHHHHHhC-----CCceeC-
Q 010367 238 -------NSKKKQ--------ALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-----KPMIYG- 295 (512)
Q Consensus 238 -------~~~~~~--------~~~~~~~~k~~~l~~ll~~~~-~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g- 295 (512)
...... ........|+..+..++..+. ...+.++||||+++..++.+++.|. +..+||
T Consensus 315 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~ 394 (494)
T 1wp9_A 315 ASKEIFSDKRMKKAISLLVQAKEIGLDHPKMDKLKEIIREQLQRKQNSKIIVFTNYRETAKKIVNELVKDGIKAKRFVGQ 394 (494)
T ss_dssp HHHHHHTSHHHHHHHHHHHHHHHHTCSCHHHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHTTCCEEEECCS
T ss_pred hhhhhhhhHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhccCCCCeEEEEEccHHHHHHHHHHHHHcCCCcEEEecc
Confidence 000000 000134557777777776532 1358899999999999999999983 346899
Q ss_pred -------CCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCcccccc
Q 010367 296 -------ATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMA 368 (512)
Q Consensus 296 -------~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~ 368 (512)
+++..+|.+++++|+++ +++|||+|+++++|+|+|++++||+++.+| |+..+.||+||+||.|
T Consensus 395 ~~~~~~~~~~~~~r~~~~~~F~~~-~~~vLv~T~~~~~Gldl~~~~~Vi~~d~~~-~~~~~~Qr~GR~~R~g-------- 464 (494)
T 1wp9_A 395 ASKENDRGLSQREQKLILDEFARG-EFNVLVATSVGEEGLDVPEVDLVVFYEPVP-SAIRSIQRRGRTGRHM-------- 464 (494)
T ss_dssp SCC-------CCHHHHHHHHHHHT-SCSEEEECGGGGGGGGSTTCCEEEESSCCH-HHHHHHHHHTTSCSCC--------
T ss_pred ccccccccCCHHHHHHHHHHHhcC-CceEEEECCccccCCCchhCCEEEEeCCCC-CHHHHHHHHhhccCCC--------
Confidence 89999999999999997 899999999999999999999999998887 9999999999999999
Q ss_pred CCCCceeEEEEEEEeCCcHhhHHHHH
Q 010367 369 GGKEEYNAFFYSLVSTDTQEMFYSTK 394 (512)
Q Consensus 369 ~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (512)
+ +.+|.+++.+++|+.+...
T Consensus 465 ---~---g~~~~l~~~~t~ee~~~~~ 484 (494)
T 1wp9_A 465 ---P---GRVIILMAKGTRDEAYYWS 484 (494)
T ss_dssp ---C---SEEEEEEETTSHHHHHHHH
T ss_pred ---C---ceEEEEEecCCHHHHHHHH
Confidence 3 5688999999999976544
No 7
>3dmq_A RNA polymerase-associated protein RAPA; SWF2/SNF2, transcription factor, RNA polymerase recycling, activator, ATP-binding, DNA-binding; 3.20A {Escherichia coli K12}
Probab=100.00 E-value=3.6e-39 Score=364.54 Aligned_cols=349 Identities=14% Similarity=0.124 Sum_probs=247.9
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---C--CCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K--KSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~--~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
...++|+|||.+++.+++... ..+++|+++||+|||++++.++... + +++|||||+ .|+.||..+|.+|+++
T Consensus 149 ~~~~~LrpyQ~eav~~~l~~~-~~~~LLad~tGlGKTi~Ai~~i~~l~~~g~~~rvLIVvP~-sLl~Qw~~E~~~~f~l- 225 (968)
T 3dmq_A 149 GQRTSLIPHQLNIAHDVGRRH-APRVLLADEVGLGKTIEAGMILHQQLLSGAAERVLIIVPE-TLQHQWLVEMLRRFNL- 225 (968)
T ss_dssp CCSSCCCHHHHHHHHHHHHSS-SCEEEECCCTTSCHHHHHHHHHHHHHHTSSCCCEEEECCT-TTHHHHHHHHHHHSCC-
T ss_pred CCCCCCcHHHHHHHHHHHHhc-CCCEEEECCCCCcHHHHHHHHHHHHHHhCCCCeEEEEeCH-HHHHHHHHHHHHHhCC-
Confidence 456899999999999988754 3478999999999999999888654 2 489999999 8999999999998764
Q ss_pred CCcEEEEcCCccc-------cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH-----HH
Q 010367 96 DDQICRFTSDSKE-------RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM-----FR 163 (512)
Q Consensus 96 ~~~v~~~~~~~~~-------~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~-----~~ 163 (512)
.+.++++.... ......+|+|+||+++.....+ ...+....|++||+||||++++.. ..
T Consensus 226 --~v~v~~~~~~~~~~~~~~~~~~~~dIvI~T~~~L~~~~~~-------~~~l~~~~~dlVIvDEAH~~kn~~~~~s~~~ 296 (968)
T 3dmq_A 226 --RFALFDDERYAEAQHDAYNPFDTEQLVICSLDFARRSKQR-------LEHLCEAEWDLLVVDEAHHLVWSEDAPSREY 296 (968)
T ss_dssp --CCEECCHHHHHHHHHTTCSSSTTCSEEEECHHHHHTSTTT-------THHHHTSCCCEEEECCSSCCCCBTTBCCHHH
T ss_pred --CEEEEccchhhhhhhhcccccccCCEEEEcHHHHhhCHHH-------HHHhhhcCCCEEEehhhHhhcCCCCcchHHH
Confidence 35666554311 1234578999999999765332 233445789999999999998642 12
Q ss_pred HHHHhc--ccceEEEEcccCCCCcch-HhhhHhhhCCceeeec------------HHHHH--------------------
Q 010367 164 KVISLT--KSHCKLGLTATLVREDER-ITDLNFLIGPKLYEAN------------WLDLV-------------------- 208 (512)
Q Consensus 164 ~~l~~~--~~~~~l~LTATp~~~~~~-~~~l~~l~gp~~~~~~------------~~~l~-------------------- 208 (512)
+.+..+ +.+++|+|||||.+++.. ...+..++.|..+... ..+..
T Consensus 297 ~~l~~L~~~~~~~L~LTATPi~n~~~el~sll~~L~p~~~~~~~~f~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~L~~~ 376 (968)
T 3dmq_A 297 QAIEQLAEHVPGVLLLTATPEQLGMESHFARLRLLDPNRFHDFAQFVEEQKNYCPVADAVAMLLAGNKLSNDELNMLGEM 376 (968)
T ss_dssp HHHHHHHTTCSSEEESCSSCSSSCSSCTHHHHHHHCTTTCSSTHHHHHHHHHHHHHHHHHHTTTTSCCCCGGGTTSSTTT
T ss_pred HHHHHHhhcCCcEEEEEcCCccCCHHHHHHHHHhcCccccCCHHHHHHHHHhHHHHHHHHHHHhccCCCCHHHHHHHHHH
Confidence 344444 566899999999875432 2223333333322110 00000
Q ss_pred --------------------------------h------------C---CCcccceeEEEEcCCCHHHHHHHHHhhch--
Q 010367 209 --------------------------------K------------G---GFIANVQCAEVWCPMTKEFFSEYLKKENS-- 239 (512)
Q Consensus 209 --------------------------------~------------~---~~l~~~~~~~~~~~~~~~~~~~~l~~~~~-- 239 (512)
+ . +-........+.+++++.....|......
T Consensus 377 l~~~~~~~l~~~~~~~~~~~~~~~~~~i~~lld~~g~~~~l~r~~r~~i~~~p~r~~~~~~l~~~~~~~~~~~~~~~~~~ 456 (968)
T 3dmq_A 377 IGEQDIEPLLQAANSDSEDAQSARQELVSMLMDRHGTSRVLFRNTRNGVKGFPKRELHTIKLPLPTQYQTAIKVSGIMGA 456 (968)
T ss_dssp TCTTCSSTTGGGTCCCSSCSTTTHHHHHHHHGGGCTTTTTEECCCTTTCCCCCCCCCCEEEECCCHHHHHHHHHHHHTTC
T ss_pred hcchhhHHHHhcccchhhhhHHHHHHHHHHHHHhhCcchhhhhhhhhhhcccChhheEeeecCCCHHHHHHHHHHhhhhh
Confidence 0 0 00011122344555665544433210000
Q ss_pred ------HHHHH---------------HhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC------CCc
Q 010367 240 ------KKKQA---------------LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR------KPM 292 (512)
Q Consensus 240 ------~~~~~---------------~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~------~~~ 292 (512)
..... .......|...+..++... ++.++||||+++..++.++..|. +..
T Consensus 457 ~~~~~~~~~~~l~pe~~~~~l~~~~~~~~~~~~K~~~L~~ll~~~---~~~k~iVF~~~~~~~~~l~~~L~~~~g~~~~~ 533 (968)
T 3dmq_A 457 RKSAEDRARDMLYPERIYQEFEGDNATWWNFDPRVEWLMGYLTSH---RSQKVLVICAKAATALQLEQVLREREGIRAAV 533 (968)
T ss_dssp CSSGGGGTHHHHCSGGGTTTTTSSSCCTTTTSHHHHHHHHHHHHT---SSSCCCEECSSTHHHHHHHHHHHTTTCCCEEE
T ss_pred hhhhHHHHhhhcChHHHHHHhhhhhhcccCccHHHHHHHHHHHhC---CCCCEEEEeCcHHHHHHHHHHHHHHcCCcEEE
Confidence 00000 1122345778888887653 48899999999999999999884 246
Q ss_pred eeCCCCHHHHHHHHHHhhCCC-CccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCC
Q 010367 293 IYGATSHVERTKILQAFKCSR-DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371 (512)
Q Consensus 293 i~g~~~~~eR~~il~~F~~~~-~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 371 (512)
+||++++.+|.++++.|++++ .++|||+|+++++|+|+|++++||+++.+| |+..|.|++||++|.|+
T Consensus 534 lhG~~~~~~R~~~l~~F~~g~~~~~vLvaT~v~~~GlDl~~~~~VI~~d~p~-~~~~~~Q~~GR~~R~Gq---------- 602 (968)
T 3dmq_A 534 FHEGMSIIERDRAAAWFAEEDTGAQVLLCSEIGSEGRNFQFASHMVMFDLPF-NPDLLEQRIGRLDRIGQ---------- 602 (968)
T ss_dssp ECTTSCTTHHHHHHHHHHSTTSSCEEEECSCCTTCSSCCTTCCEEECSSCCS-SHHHHHHHHHTTSCSSS----------
T ss_pred EeCCCCHHHHHHHHHHHhCCCCcccEEEecchhhcCCCcccCcEEEEecCCC-CHHHHHHHhhccccCCC----------
Confidence 999999999999999999982 399999999999999999999999999887 99999999999999994
Q ss_pred CceeEEEEEEEeCCcHhhHHHHHHH
Q 010367 372 EEYNAFFYSLVSTDTQEMFYSTKRQ 396 (512)
Q Consensus 372 ~~~~~~~y~lv~~~t~e~~~~~~r~ 396 (512)
...+.+|.++..++.++.+.+...
T Consensus 603 -~~~v~v~~~~~~~t~ee~i~~~~~ 626 (968)
T 3dmq_A 603 -AHDIQIHVPYLEKTAQSVLVRWYH 626 (968)
T ss_dssp -CSCCEEEEEEETTSHHHHHHHHHH
T ss_pred -CceEEEEEecCCChHHHHHHHHHH
Confidence 446999999999999997765543
No 8
>3tbk_A RIG-I helicase domain; DECH helicase, ATP binding, hydrolase; HET: ANP; 2.14A {Mus musculus}
Probab=100.00 E-value=2.7e-39 Score=346.71 Aligned_cols=339 Identities=18% Similarity=0.202 Sum_probs=217.3
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
.++|||||.++++.++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+++..
T Consensus 2 ~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 78 (555)
T 3tbk_A 2 PLKPRNYQLELALPAKKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPCGQKGKVVFFANQIPVYEQQATVFSRYFER 78 (555)
T ss_dssp CCCCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHHT
T ss_pred CCCCcHHHHHHHHHHhCCC---CEEEEeCCCChHHHHHHHHHHHHHHhcccCCCCEEEEEeCCHHHHHHHHHHHHHHhcc
Confidence 4789999999999998764 89999999999999998888654 678999999999999999999999755
Q ss_pred CCCcEEEEcCCccccc-----cCCCeEEEEchhhhhccCCCchhHHHHHHHH-hcCCccEEEEcCCCCCCch-HHHHHHH
Q 010367 95 QDDQICRFTSDSKERF-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~~-----~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~lvIiDEaH~~~~~-~~~~~l~ 167 (512)
....+..++|+..... ...++|+|+||+++.....+. .+ ....+++||+||||++.+. .+..++.
T Consensus 79 ~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~ 150 (555)
T 3tbk_A 79 LGYNIASISGATSDSVSVQHIIEDNDIIILTPQILVNNLNNG--------AIPSLSVFTLMIFDECHNTSKNHPYNQIMF 150 (555)
T ss_dssp TTCCEEEECTTTGGGSCHHHHHHHCSEEEECHHHHHHHHHTS--------SSCCGGGCSEEEETTGGGCSTTCHHHHHHH
T ss_pred CCcEEEEEcCCCcchhhHHHHhcCCCEEEECHHHHHHHHhcC--------cccccccCCEEEEECccccCCcchHHHHHH
Confidence 5567888888864321 235789999999986542110 01 1256899999999999865 4444432
Q ss_pred hc----------ccceEEEEcccCCCCcch--------HhhhHhhhCCc-eeee--cHHHHHhCCCcccceeEEEEcC--
Q 010367 168 LT----------KSHCKLGLTATLVREDER--------ITDLNFLIGPK-LYEA--NWLDLVKGGFIANVQCAEVWCP-- 224 (512)
Q Consensus 168 ~~----------~~~~~l~LTATp~~~~~~--------~~~l~~l~gp~-~~~~--~~~~l~~~~~l~~~~~~~~~~~-- 224 (512)
.+ ...++|+|||||.+.+.. +..+...++.. +... ...++. .++.......+.+.
T Consensus 151 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~~~l~--~~~~~~~~~~~~~~~~ 228 (555)
T 3tbk_A 151 RYLDHKLGESRDPLPQVVGLTASVGVGDAKTAEEAMQHICKLCAALDASVIATVRDNVAELE--QVVYKPQKISRKVASR 228 (555)
T ss_dssp HHHHHHTSSCCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHTTCSEEECCCSCHHHHH--TTCCCCCEEEEECCCC
T ss_pred HHHHhhhccccCCCCeEEEEecCcccCccccHHHHHHHHHHHHHhcCCeeeeccccCHHHHH--hhcCCCceEEEEecCc
Confidence 22 224799999999876522 22333444432 2211 223332 23444333333333
Q ss_pred CCHHHH-------------------------------------HHHHHhhch----------------------------
Q 010367 225 MTKEFF-------------------------------------SEYLKKENS---------------------------- 239 (512)
Q Consensus 225 ~~~~~~-------------------------------------~~~l~~~~~---------------------------- 239 (512)
....+. ..++.....
T Consensus 229 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 308 (555)
T 3tbk_A 229 TSNTFKCIISQLMKETEKLAKDVSEELGKLFQIQNREFGTQKYEQWIVGVHKACSVFQMADKEEESRVCKALFLYTSHLR 308 (555)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHTSCHHHHGGGGCCSCCSSSHHHHHHHHHHHHHHHTCCCSSHHHHHHHHHHHHHHHHHHH
T ss_pred ccChHHHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhhHHHHHHHHHhhhhhccchhhHHHHHHHHHHHHHHHH
Confidence 111110 001000000
Q ss_pred -----------------------------------HHHH----------------HHhhcCcchHHHHHHHHHHh-hhcC
Q 010367 240 -----------------------------------KKKQ----------------ALYVMNPNKFRACEFLIRFH-EQQR 267 (512)
Q Consensus 240 -----------------------------------~~~~----------------~~~~~~~~k~~~l~~ll~~~-~~~~ 267 (512)
..+. ........|+..+..++... ...+
T Consensus 309 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~k~~~l~~~l~~~~~~~~ 388 (555)
T 3tbk_A 309 KYNDALIISEDAQMTDALNYLKAFFHDVREAAFDETERELTRRFEEKLEELEKVSRDPSNENPKLRDLYLVLQEEYHLKP 388 (555)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHCC-----HHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHHHCT
T ss_pred HHHHHHhhhhhhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHhhhhhhhhhhccCCCcCCHHHHHHHHHHHHHhccCC
Confidence 0000 00001245777777777543 2245
Q ss_pred CCeEEEEecCHHHHHHHHHHhC-----------------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccC
Q 010367 268 GDKIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (512)
Q Consensus 268 g~k~iVf~~~~~~~~~l~~~L~-----------------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDl 330 (512)
+.++||||+++.+++.++..|. ...+||++++.+|.+++++|+++++++|||+|+++++|||+
T Consensus 389 ~~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GlDl 468 (555)
T 3tbk_A 389 ETKTILFVKTRALVDALKKWIEENPALSFLKPGILTGRGRTNRATGMTLPAQKCVLEAFRASGDNNILIATSVADEGIDI 468 (555)
T ss_dssp TCCEEEECSSHHHHHHHHHHHHHCGGGTTCCEEECCC--------------------------CCSEEEECCCTTCCEET
T ss_pred CceEEEEeCcHHHHHHHHHHHhhCcCcCceeeeEEEecCCcccccccCHHHHHHHHHHHhcCCCeeEEEEcchhhcCCcc
Confidence 6899999999999999999882 12356799999999999999993389999999999999999
Q ss_pred ccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhH
Q 010367 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (512)
Q Consensus 331 p~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~ 390 (512)
|++++||+++.+| |+..|+||+|| ||.. .+.+|.+++.++.++.
T Consensus 469 p~v~~VI~~d~p~-s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~ 512 (555)
T 3tbk_A 469 AECNLVILYEYVG-NVIKMIQTRGR-GRAR--------------DSKCFLLTSSADVIEK 512 (555)
T ss_dssp TSCSEEEEESCCS-SCCCEECSSCC-CTTT--------------SCEEEEEESCHHHHHH
T ss_pred ccCCEEEEeCCCC-CHHHHHHhcCc-CcCC--------------CceEEEEEcCCCHHHH
Confidence 9999999999887 99999999999 7763 3667888998888764
No 9
>4a2p_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.00A {Anas platyrhynchos} PDB: 4a36_A*
Probab=100.00 E-value=3.4e-39 Score=346.25 Aligned_cols=340 Identities=16% Similarity=0.198 Sum_probs=191.7
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
..++|||||.++++.++.+. ++++++|||+|||++++.++... +.++|||||+++|+.||.++|.+++.
T Consensus 4 ~~~~~~~~Q~~~i~~~~~~~---~~l~~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~ 80 (556)
T 4a2p_A 4 ETKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFE 80 (556)
T ss_dssp ----CCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHG
T ss_pred CCCCCCHHHHHHHHHHHcCC---CEEEEcCCCChHHHHHHHHHHHHHHhCcccCCCeEEEEeCCHHHHHHHHHHHHHHhc
Confidence 35789999999999998764 89999999999999998888654 67899999999999999999999875
Q ss_pred CCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHH-hcCCccEEEEcCCCCCCch-HHHHHH
Q 010367 94 IQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVI 166 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~lvIiDEaH~~~~~-~~~~~l 166 (512)
.....+..++|+.... ....++|+|+||+.|.....+. .+ ....+++||+||||++.+. .+..++
T Consensus 81 ~~~~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~ 152 (556)
T 4a2p_A 81 RQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLM 152 (556)
T ss_dssp GGTCCEEECCCC-----CHHHHHHHCSEEEECHHHHHHHHHSS--------SCCCSTTCSEEEEETGGGCSTTSHHHHHH
T ss_pred ccCceEEEEeCCCCcchhHHHhhCCCCEEEECHHHHHHHHHhC--------cccccccCCEEEEECCcccCCcchHHHHH
Confidence 4456788888875322 1245789999999987532110 11 2356899999999999865 343332
Q ss_pred Hhc---------ccceEEEEcccCCCCcch--------HhhhHhhhCCceeee---cHHHHHhCCCcccceeEEEEcC--
Q 010367 167 SLT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPKLYEA---NWLDLVKGGFIANVQCAEVWCP-- 224 (512)
Q Consensus 167 ~~~---------~~~~~l~LTATp~~~~~~--------~~~l~~l~gp~~~~~---~~~~l~~~~~l~~~~~~~~~~~-- 224 (512)
..+ +..++|+|||||...+.. +..+...++...... ...++.. ++.......+...
T Consensus 153 ~~~~~~~~~~~~~~~~~l~lSAT~~~~~~~~~~~~~~~i~~l~~~l~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~ 230 (556)
T 4a2p_A 153 TRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR--FMNKPEIDVRLVKRR 230 (556)
T ss_dssp HHHHHHHHCC---CCEEEEEESCCCCTTCSSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH--HTCCCCEEEEECCCC
T ss_pred HHHHHhhhcccCCCCeEEEEeCCcccCchhhHHHHHHHHHHHHHhcCCeEecchhcchHHHHh--cCCCCceEEEEcCCC
Confidence 221 235799999999765422 112333344322111 1222221 2222222222222
Q ss_pred CCHHH------------------------------------HHHHHHhhch-----------------------------
Q 010367 225 MTKEF------------------------------------FSEYLKKENS----------------------------- 239 (512)
Q Consensus 225 ~~~~~------------------------------------~~~~l~~~~~----------------------------- 239 (512)
....+ |..++.....
T Consensus 231 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 310 (556)
T 4a2p_A 231 IHNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRK 310 (556)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHCC---------CCCSSHHHHHHHHHHHHHHHHC---CHHHHHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHhhhhhhhcccccccchhhHHHHHHHHHHHHHhhcccccchhHHHHHHHHHHHHHHHH
Confidence 11100 0001000000
Q ss_pred ----------------------------------HHHHHH----------------hhcCcchHHHHHHHHHH-hhhcCC
Q 010367 240 ----------------------------------KKKQAL----------------YVMNPNKFRACEFLIRF-HEQQRG 268 (512)
Q Consensus 240 ----------------------------------~~~~~~----------------~~~~~~k~~~l~~ll~~-~~~~~g 268 (512)
..+... ......|+..+..++.. .....+
T Consensus 311 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~~l~~~~~~~~~ 390 (556)
T 4a2p_A 311 YNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQ 390 (556)
T ss_dssp HHHHHHHHHHSCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHTTHHHHHHHHHCSSSCCHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHhhhhhHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHhhHHHHhhhhccCCCCCChHHHHHHHHHHHHhcCCCC
Confidence 000000 00124577777777743 222457
Q ss_pred CeEEEEecCHHHHHHHHHHhCC-----------------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCc
Q 010367 269 DKIIVFADNLFALTEYAMKLRK-----------------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIP 331 (512)
Q Consensus 269 ~k~iVf~~~~~~~~~l~~~L~~-----------------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp 331 (512)
.++||||+++.+++.++..|.. ..+||++++.+|.+++++|+++++++|||+|+++++|||+|
T Consensus 391 ~k~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~R~~~~~~F~~~g~~~vLvaT~~~~~GiDip 470 (556)
T 4a2p_A 391 TRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIV 470 (556)
T ss_dssp CCEEEEESSHHHHHHHHHHHTTCSGGGSCCEEC------------------------------CCEEEEEC---------
T ss_pred ceEEEEEccHHHHHHHHHHHHhCCCcceeeeeEEEccCCcccccccCHHHHHHHHHHhcccCceEEEEEcCchhcCCCch
Confidence 8999999999999999999842 13577899999999999999933899999999999999999
Q ss_pred cccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhH
Q 010367 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMF 390 (512)
Q Consensus 332 ~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~ 390 (512)
++++||+++.|+ |+..|+||+|| ||.. .+.+|.+++.++.++.
T Consensus 471 ~v~~VI~~d~p~-s~~~~~Qr~GR-gR~~--------------~g~~~~l~~~~~~~~~ 513 (556)
T 4a2p_A 471 QCNLVVLYEYSG-NVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVEN 513 (556)
T ss_dssp --CEEEEETCCS-CHHHHHHC-----------------------CCEEEEESCHHHHHH
T ss_pred hCCEEEEeCCCC-CHHHHHHhcCC-CCCC--------------CceEEEEEeCcchHHH
Confidence 999999999887 99999999999 8875 3557788999988774
No 10
>3h1t_A Type I site-specific restriction-modification system, R (restriction) subunit; hydrolase, restriction enzyme HSDR, ATP-binding; 2.30A {Vibrio vulnificus}
Probab=100.00 E-value=3.9e-39 Score=348.57 Aligned_cols=335 Identities=18% Similarity=0.252 Sum_probs=221.1
Q ss_pred CCCCCCcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHhc------------CCCEEEEEcChhhHHHHH-
Q 010367 21 KPHAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI------------KKSCLCLATNAVSVDQWA- 85 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~------------~~~~Lvl~P~~~L~~Qw~- 85 (512)
.....|||||.+|+++++.. .+.+++++++|||+|||++++.++..+ .+++|||||+++|+.||.
T Consensus 174 ~~~~~lr~~Q~~ai~~~~~~~~~~~~~~ll~~~TGsGKT~~~~~~~~~l~~~~~~~~~~~~~~~vlil~P~~~L~~Q~~~ 253 (590)
T 3h1t_A 174 VSGYSPRYYQQIAINRAVQSVLQGKKRSLITMATGTGKTVVAFQISWKLWSARWNRTGDYRKPRILFLADRNVLVDDPKD 253 (590)
T ss_dssp C----CCHHHHHHHHHHHHHHHTTCSEEEEEECTTSCHHHHHHHHHHHHHHTTCCSSCSSSCCCEEEEEC----------
T ss_pred cCCCCchHHHHHHHHHHHHHHhcCCCceEEEecCCCChHHHHHHHHHHHHhcccccccccCCCeEEEEeCCHHHHHHHHH
Confidence 34578999999999998751 112478999999999999998887543 368999999999999999
Q ss_pred HHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc---hHH
Q 010367 86 FQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMF 162 (512)
Q Consensus 86 ~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~---~~~ 162 (512)
+.|..|.. .+..+.++. .....+|+|+||+.|....... .....+....+++||+||||++.+ ..+
T Consensus 254 ~~~~~~~~----~~~~~~~~~---~~~~~~I~v~T~~~l~~~~~~~----~~~~~~~~~~~~lvIiDEaH~~~~~~~~~~ 322 (590)
T 3h1t_A 254 KTFTPFGD----ARHKIEGGK---VVKSREIYFAIYQSIASDERRP----GLYKEFPQDFFDLIIIDECHRGSARDNSNW 322 (590)
T ss_dssp -CCTTTCS----SEEECCC-----CCSSCSEEEEEGGGC------C----CGGGGSCTTSCSEEEESCCC---------C
T ss_pred HHHHhcch----hhhhhhccC---CCCCCcEEEEEhhhhccccccc----cccccCCCCccCEEEEECCccccccchHHH
Confidence 88887632 344444432 2356789999999987642210 012233346789999999999986 478
Q ss_pred HHHHHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHH---------
Q 010367 163 RKVISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEY--------- 233 (512)
Q Consensus 163 ~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~--------- 233 (512)
+.++..++..++|+|||||.+.+.. .+..++|+.++.+...+.++.+++.++....+........+...
T Consensus 323 ~~il~~~~~~~~l~lTATP~~~~~~--~~~~~f~~~~~~~~~~~~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 400 (590)
T 3h1t_A 323 REILEYFEPAFQIGMTATPLREDNR--DTYRYFGNPIYTYSLRQGIDDGFLAPYRVHRVISEVDAAGWRPSKGDVDRFGR 400 (590)
T ss_dssp HHHHHHSTTSEEEEEESSCSCTTTH--HHHHHSCSCSEEECHHHHHHHTSSCCEEEEEEEETTCC---------------
T ss_pred HHHHHhCCcceEEEeccccccccch--hHHHHcCCceEecCHHHHhhCCccCCcEEEEeeeeeecccccccccccccccc
Confidence 8889988888999999999987654 35677899999999999999999999888777765432111100
Q ss_pred -HH----hhchHHHHHHhhcCcchHH-HHHHHHHHhh-hcCCCeEEEEecCHHHHHHHHHHhC-------------CCce
Q 010367 234 -LK----KENSKKKQALYVMNPNKFR-ACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKLR-------------KPMI 293 (512)
Q Consensus 234 -l~----~~~~~~~~~~~~~~~~k~~-~l~~ll~~~~-~~~g~k~iVf~~~~~~~~~l~~~L~-------------~~~i 293 (512)
+. ......+ .+. .+.+.. ++..+.+... ..++.|+||||+++.+++.+++.|. +..+
T Consensus 401 ~~~~~~~~~~~~~~-~~~--~~~r~~~i~~~l~~~l~~~~~~~k~lVF~~~~~~a~~l~~~L~~~~~~~~~~~~~~~~~i 477 (590)
T 3h1t_A 401 EIPDGEYQTKDFER-VIA--LKARTDAFAKHLTDFMKRTDRFAKTIVFCVDQEHADEMRRALNNLNSDLSRKHPDYVARV 477 (590)
T ss_dssp --------CCSHHH-HHH--HHHTHHHHHHHHHHHHHHHCTTSEEEEEESSHHHHHHHHHHHHHHTHHHHTTCTTSEEEC
T ss_pred ccccccCCHHHhhh-Hhc--ChHHHHHHHHHHHHHHHhcCCCccEEEEECCHHHHHHHHHHHHHhhhhhhccCCCeEEEE
Confidence 00 0000000 000 011112 2223322222 1456899999999999999999882 2357
Q ss_pred eCCCCHHHHHHHHHHhhCCCCcc---EEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCC
Q 010367 294 YGATSHVERTKILQAFKCSRDLN---TIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGG 370 (512)
Q Consensus 294 ~g~~~~~eR~~il~~F~~~~~~~---vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~ 370 (512)
||+++. +|.+++++|+++ +.+ ||++|+++++|||+|++++||++++++ |+..|+|++||++|.++..
T Consensus 478 ~g~~~~-~r~~~l~~F~~~-~~~~~~ilvtt~~l~~GiDip~v~~Vi~~~~~~-s~~~~~Q~iGR~~R~~~~~------- 547 (590)
T 3h1t_A 478 TSEEGK-IGKGHLSRFQEL-ETSTPVILTTSQLLTTGVDAPTCKNVVLARVVN-SMSEFKQIVGRGTRLREDY------- 547 (590)
T ss_dssp SSTTHH-HHHHHHHHHHCT-TCCCCCEEEESSTTTTTCCCTTEEEEEEESCCC-CHHHHHHHHTTSCCCBGGG-------
T ss_pred eCCChH-HHHHHHHHHhCC-CCCCCEEEEECChhhcCccchheeEEEEEecCC-ChHHHHHHHhhhcccCccC-------
Confidence 888764 799999999996 433 777889999999999999999998876 9999999999999998511
Q ss_pred CCceeEEEEEEE
Q 010367 371 KEEYNAFFYSLV 382 (512)
Q Consensus 371 ~~~~~~~~y~lv 382 (512)
....+.+|+++
T Consensus 548 -~k~~~~I~D~~ 558 (590)
T 3h1t_A 548 -GKLWFNIIDYT 558 (590)
T ss_dssp -TBSCEEEEECS
T ss_pred -CCCEEEEEecC
Confidence 12257777776
No 11
>4a2q_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.40A {Anas platyrhynchos}
Probab=100.00 E-value=2.4e-38 Score=353.26 Aligned_cols=340 Identities=16% Similarity=0.177 Sum_probs=201.3
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
..+|||||.++++.++.+. ++++++|||+|||++++.++... ++++|||||+++|+.||.++|.+|+..
T Consensus 246 ~~~l~~~Q~~~i~~~l~~~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~Lvl~Pt~~L~~Q~~~~~~~~~~~ 322 (797)
T 4a2q_A 246 TKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHFER 322 (797)
T ss_dssp --CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHTCCSSCCCCEEEECSSHHHHHHHHHHHHHHHGG
T ss_pred CCCCCHHHHHHHHHHHhCC---CEEEEeCCCChHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHhccc
Confidence 5789999999999998764 89999999999999998888655 678999999999999999999999754
Q ss_pred CCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHH-hcCCccEEEEcCCCCCCch-HHHHHHH
Q 010367 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~lvIiDEaH~~~~~-~~~~~l~ 167 (512)
....+..++|+.... ....++|+|+||++|.....+. .+ ....|++||+||||++.+. .+..++.
T Consensus 323 ~~~~v~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~~iViDEaH~~~~~~~~~~i~~ 394 (797)
T 4a2q_A 323 QGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVLMT 394 (797)
T ss_dssp GTCCEEEECCC-----CHHHHHHTCSEEEECHHHHHHHHHSS--------SCCCGGGCSEEEETTGGGCSTTSHHHHHHH
T ss_pred CCceEEEEeCCcchhhhHHHhhCCCCEEEEchHHHHHHHHhc--------cccccccCCEEEEECccccCCCccHHHHHH
Confidence 456788888876432 2246889999999986542110 01 1246799999999999865 4444432
Q ss_pred hc---------ccceEEEEcccCCCCcc--------hHhhhHhhhCCceeeecH---HHHHhCCCcccceeEEEEcC--C
Q 010367 168 LT---------KSHCKLGLTATLVREDE--------RITDLNFLIGPKLYEANW---LDLVKGGFIANVQCAEVWCP--M 225 (512)
Q Consensus 168 ~~---------~~~~~l~LTATp~~~~~--------~~~~l~~l~gp~~~~~~~---~~l~~~~~l~~~~~~~~~~~--~ 225 (512)
.+ +..++|+|||||.+.+. .+..+...+++....... .++.. ++.......+.++ .
T Consensus 395 ~~~~~~~~~~~~~~~~l~lSATp~~~~~~~~~~~~~~i~~l~~~L~~~~i~~~~~~~~~l~~--~~~~~~~~~~~~~~~~ 472 (797)
T 4a2q_A 395 RYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR--FMNKPEIDVRLVKRRI 472 (797)
T ss_dssp HHHHHHHTTCCCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCTTHHHHHH--HSCCCCCEEEECCCCS
T ss_pred HHHHHhhccCCCCCeEEEEcCCccccccccHHHHHHHHHHHHHhcCCcEEecccccHHHHHH--hcCCCceEEEecCCCC
Confidence 22 22579999999986542 222333444443222211 22221 2333333333222 1
Q ss_pred CHH------------------------------------HHHHHHHhhch------------------------------
Q 010367 226 TKE------------------------------------FFSEYLKKENS------------------------------ 239 (512)
Q Consensus 226 ~~~------------------------------------~~~~~l~~~~~------------------------------ 239 (512)
... .+..++.....
T Consensus 473 ~~~~~~~~~~l~~~i~~~~~~~~~l~~l~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~~~ 552 (797)
T 4a2q_A 473 HNPFAAIISNLMSETEALMRTIYSVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLRKY 552 (797)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSSHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcHHHHHHHHHHHHHHHHHHHHHhhHHhhhhccccccchhHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHHHH
Confidence 100 00001100000
Q ss_pred ---------------------------------HHHHH----------------HhhcCcchHHHHHHHHHH-hhhcCCC
Q 010367 240 ---------------------------------KKKQA----------------LYVMNPNKFRACEFLIRF-HEQQRGD 269 (512)
Q Consensus 240 ---------------------------------~~~~~----------------~~~~~~~k~~~l~~ll~~-~~~~~g~ 269 (512)
..+.. .......|+..+..++.. .....+.
T Consensus 553 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~~~ 632 (797)
T 4a2q_A 553 NDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNPQT 632 (797)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHTTHHHHHHHHHCTTCCCHHHHHHHHHHHHHHHHCSSC
T ss_pred HHHHhhhccccHHHHHHHHHHHHHHHhccCccHHHHHHHHHHHHHHHHHHHhhcCCCCCChHHHHHHHHHHHHhccCCCC
Confidence 00000 000124577777777754 2225678
Q ss_pred eEEEEecCHHHHHHHHHHhC-----------------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCcc
Q 010367 270 KIIVFADNLFALTEYAMKLR-----------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (512)
Q Consensus 270 k~iVf~~~~~~~~~l~~~L~-----------------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~ 332 (512)
++||||+++..++.++..|. ...+||++++.+|.+++++|++++.++|||+|+++++|||+|+
T Consensus 633 kvLIF~~~~~~~~~L~~~L~~~~~~~~~~~~~l~G~~~~~~hg~~~~~eR~~~l~~F~~~g~~~vLVaT~~~~~GIDlp~ 712 (797)
T 4a2q_A 633 RTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDIVQ 712 (797)
T ss_dssp CEEEEESSHHHHHHHHHHHHTCSTTCSCCCEEC----------------------------CCSEEEEECC-------CC
T ss_pred eEEEEECcHHHHHHHHHHHHhCcccccccceEEEecCCcccCCCCCHHHHHHHHHHhhccCCceEEEEcCchhcCCCchh
Confidence 99999999999999999992 2346888999999999999999338999999999999999999
Q ss_pred ccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHH
Q 010367 333 ANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (512)
Q Consensus 333 ~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (512)
+++||+++.++ |+..|+||+|| ||.. .+.+|.+++.++.++.+
T Consensus 713 v~~VI~yd~p~-s~~~~iQr~GR-GR~~--------------~g~~i~l~~~~~~ee~~ 755 (797)
T 4a2q_A 713 CNLVVLYEYSG-NVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENE 755 (797)
T ss_dssp CSEEEEESCCS-CHHHHHTC----------------------CCCEEEEECCHHHHHHH
T ss_pred CCEEEEeCCCC-CHHHHHHhcCC-CCCC--------------CceEEEEEeCCcHHHHH
Confidence 99999999887 99999999999 8875 35577889999888753
No 12
>1s2m_A Putative ATP-dependent RNA helicase DHH1; ATP-binding, RNA-binding, RNA binding protein; 2.10A {Saccharomyces cerevisiae} SCOP: c.37.1.19 c.37.1.19 PDB: 2wax_A* 2way_A
Probab=100.00 E-value=1.3e-37 Score=320.37 Aligned_cols=302 Identities=17% Similarity=0.150 Sum_probs=220.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||+||+++|+.||.+++.+++......
T Consensus 43 ~~~~~Q~~~i~~i~~~~---~~li~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 119 (400)
T 1s2m_A 43 KPSPIQEEAIPVAITGR---DILARAKNGTGKTAAFVIPTLEKVKPKLNKIQALIMVPTRELALQTSQVVRTLGKHCGIS 119 (400)
T ss_dssp SCCHHHHHHHHHHHHTC---CEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhcCC---CEEEECCCCcHHHHHHHHHHHHHHhhccCCccEEEEcCCHHHHHHHHHHHHHHhcccCce
Confidence 59999999999998775 89999999999999988777543 3479999999999999999999987655567
Q ss_pred EEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc----
Q 010367 99 ICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT---- 169 (512)
Q Consensus 99 v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~---- 169 (512)
+..+.++... .....++|+|+||+.+.....+ ......++++||+||||++.+..|...+..+
T Consensus 120 ~~~~~g~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~~--------~~~~~~~~~~vIiDEaH~~~~~~~~~~~~~i~~~~ 191 (400)
T 1s2m_A 120 CMVTTGGTNLRDDILRLNETVHILVGTPGRVLDLASR--------KVADLSDCSLFIMDEADKMLSRDFKTIIEQILSFL 191 (400)
T ss_dssp EEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEEESHHHHSSHHHHHHHHHHHTTS
T ss_pred EEEEeCCcchHHHHHHhcCCCCEEEEchHHHHHHHHh--------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhC
Confidence 7777776542 1236688999999988543111 1111256899999999999887766555443
Q ss_pred -ccceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 170 -KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
...++++||||+...... .+...++ |...... ..-...........+.
T Consensus 192 ~~~~~~i~lSAT~~~~~~~--~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~----------------------- 241 (400)
T 1s2m_A 192 PPTHQSLLFSATFPLTVKE--FMVKHLHKPYEINLM-----EELTLKGITQYYAFVE----------------------- 241 (400)
T ss_dssp CSSCEEEEEESCCCHHHHH--HHHHHCSSCEEESCC-----SSCBCTTEEEEEEECC-----------------------
T ss_pred CcCceEEEEEecCCHHHHH--HHHHHcCCCeEEEec-----cccccCCceeEEEEec-----------------------
Confidence 245789999998632211 1222222 2111100 0001111111111111
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
...|...+..++... .+.++||||+++..++.+++.| .+..+||+++..+|.++++.|+++ +.+|||+|+
T Consensus 242 -~~~k~~~l~~~~~~~---~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vLv~T~ 316 (400)
T 1s2m_A 242 -ERQKLHCLNTLFSKL---QINQAIIFCNSTNRVELLAKKITDLGYSCYYSHARMKQQERNKVFHEFRQG-KVRTLVCSD 316 (400)
T ss_dssp -GGGHHHHHHHHHHHS---CCSEEEEECSSHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHTT-SSSEEEESS
T ss_pred -hhhHHHHHHHHHhhc---CCCcEEEEEecHHHHHHHHHHHHhcCCCeEEecCCCCHHHHHHHHHHHhcC-CCcEEEEcC
Confidence 123445555666543 4679999999999999999998 345799999999999999999997 899999999
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
++++|+|+|++++||+++.++ |+..|+||+||++|.|+ .+.++.+++.+.
T Consensus 317 ~~~~Gidip~~~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~-------------~g~~~~l~~~~~ 366 (400)
T 1s2m_A 317 LLTRGIDIQAVNVVINFDFPK-TAETYLHRIGRSGRFGH-------------LGLAINLINWND 366 (400)
T ss_dssp CSSSSCCCTTEEEEEESSCCS-SHHHHHHHHCBSSCTTC-------------CEEEEEEECGGG
T ss_pred ccccCCCccCCCEEEEeCCCC-CHHHHHHhcchhcCCCC-------------CceEEEEeccch
Confidence 999999999999999998876 99999999999999884 245666776654
No 13
>1xti_A Probable ATP-dependent RNA helicase P47; alpha-beta fold, gene regulation; 1.95A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 1xtj_A* 1xtk_A
Probab=100.00 E-value=6.6e-38 Score=321.33 Aligned_cols=292 Identities=15% Similarity=0.118 Sum_probs=212.1
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC-CC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~-~~ 97 (512)
.|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||+||+++|+.||.+++.++.... ..
T Consensus 30 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 106 (391)
T 1xti_A 30 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 106 (391)
T ss_dssp SCCHHHHHHHHHHTTTC---CEEEECSSCSSHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTCTTC
T ss_pred CCCHHHHHHHHHHhcCC---cEEEECCCCCcHHHHHHHHHHHhhcccCCCeeEEEECCCHHHHHHHHHHHHHHHhhCCCe
Confidence 59999999999988764 89999999999999988777654 3489999999999999999999986543 56
Q ss_pred cEEEEcCCcccc-----c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HH----HHHH
Q 010367 98 QICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MF----RKVI 166 (512)
Q Consensus 98 ~v~~~~~~~~~~-----~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~----~~~l 166 (512)
.+..+.|+.... + .+.++|+|+||+++.....+ ..+....+++||+||||++... .+ ..++
T Consensus 107 ~~~~~~g~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~vViDEaH~~~~~~~~~~~~~~~~ 178 (391)
T 1xti_A 107 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 178 (391)
T ss_dssp CEEEECTTSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--------TSSCCTTCSEEEECSHHHHTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCHHHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCccccccCEEEEeCHHHHhhccchHHHHHHHH
Confidence 788888875421 1 24478999999988653211 1112357899999999999863 33 3344
Q ss_pred Hhcc-cceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHH
Q 010367 167 SLTK-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQA 244 (512)
Q Consensus 167 ~~~~-~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 244 (512)
.... ..++++|||||...... .+..+++ |......... .-...........++
T Consensus 179 ~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~-------------------- 233 (391)
T 1xti_A 179 RMTPHEKQVMMFSATLSKEIRP--VCRKFMQDPMEIFVDDET---KLTLHGLQQYYVKLK-------------------- 233 (391)
T ss_dssp HTSCSSSEEEEEESSCCSTHHH--HHHHHCSSCEEEECCCCC---CCCCTTCEEEEEECC--------------------
T ss_pred hhCCCCceEEEEEeeCCHHHHH--HHHHHcCCCeEEEecCcc---ccCcccceEEEEEcC--------------------
Confidence 4333 45789999999754322 1222222 2221111000 000111111111111
Q ss_pred HhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEE
Q 010367 245 LYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIF 319 (512)
Q Consensus 245 ~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv 319 (512)
...|...+..++... .+.++||||+++..++.+++.|. +..+||++++.+|.++++.|+++ +.+|||
T Consensus 234 ----~~~~~~~l~~~l~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv 305 (391)
T 1xti_A 234 ----DNEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILV 305 (391)
T ss_dssp ----GGGHHHHHHHHHHHS---CCSEEEEECSCHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-CCSEEE
T ss_pred ----chhHHHHHHHHHHhc---CCCcEEEEeCcHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHhcC-CCcEEE
Confidence 122334455555543 47899999999999999999982 45699999999999999999997 899999
Q ss_pred EeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 320 LSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 320 ~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|+++++|+|+|++++||+++.++ |+..|+||+||++|.|+
T Consensus 306 ~T~~~~~Gidi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~ 346 (391)
T 1xti_A 306 ATNLFGRGMDIERVNIAFNYDMPE-DSDTYLHRVARAGRFGT 346 (391)
T ss_dssp ESCCCSSCBCCTTEEEEEESSCCS-SHHHHHHHHCBCSSSCC
T ss_pred ECChhhcCCCcccCCEEEEeCCCC-CHHHHHHhcccccCCCC
Confidence 999999999999999999998877 99999999999999884
No 14
>2j0s_A ATP-dependent RNA helicase DDX48; mRNA processing, phosphorylation, rRNA processing, mRNA splicing, mRNA transport; HET: ANP; 2.21A {Homo sapiens} SCOP: c.37.1.19 c.37.1.19 PDB: 2j0q_A* 2hyi_C* 3ex7_C* 2xb2_A* 2hxy_A 2j0u_A 2j0u_B 2zu6_A
Probab=100.00 E-value=4.1e-38 Score=325.30 Aligned_cols=304 Identities=17% Similarity=0.164 Sum_probs=219.3
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.......
T Consensus 59 ~~~~~Q~~ai~~i~~~~---~~lv~a~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 135 (410)
T 2j0s_A 59 KPSAIQQRAIKQIIKGR---DVIAQSQSGTGKTATFSISVLQCLDIQVRETQALILAPTRELAVQIQKGLLALGDYMNVQ 135 (410)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCCchHHHHHHHHHHHhhccCCceEEEEcCcHHHHHHHHHHHHHHhccCCeE
Confidence 59999999999988764 89999999999999998887643 3589999999999999999999987655567
Q ss_pred EEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHH----HHHhc
Q 010367 99 ICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK----VISLT 169 (512)
Q Consensus 99 v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~----~l~~~ 169 (512)
+..+.++.... .....+|+|+||+.+.....+ ..+....+++||+||||++.+..+.. ++..+
T Consensus 136 ~~~~~g~~~~~~~~~~~~~~~~ivv~Tp~~l~~~l~~--------~~~~~~~~~~vViDEah~~~~~~~~~~~~~i~~~~ 207 (410)
T 2j0s_A 136 CHACIGGTNVGEDIRKLDYGQHVVAGTPGRVFDMIRR--------RSLRTRAIKMLVLDEADEMLNKGFKEQIYDVYRYL 207 (410)
T ss_dssp EEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHTSTTTHHHHHHHHTTS
T ss_pred EEEEECCCCHHHHHHHhhcCCCEEEcCHHHHHHHHHh--------CCccHhheeEEEEccHHHHHhhhhHHHHHHHHHhC
Confidence 77777764321 224578999999988643211 11223568999999999988765443 33333
Q ss_pred -ccceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 170 -KSHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 170 -~~~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
...++++|||||...... .+..++ .|.......... ...........++.
T Consensus 208 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~---------------------- 259 (410)
T 2j0s_A 208 PPATQVVLISATLPHEILE--MTNKFMTDPIRILVKRDEL----TLEGIKQFFVAVER---------------------- 259 (410)
T ss_dssp CTTCEEEEEESCCCHHHHT--TGGGTCSSCEEECCCGGGC----SCTTEEEEEEEESS----------------------
T ss_pred ccCceEEEEEcCCCHHHHH--HHHHHcCCCEEEEecCccc----cCCCceEEEEEeCc----------------------
Confidence 345789999999642111 111222 222211111000 11111111111111
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
...|...+..++.... ..++||||+++..++.+++.| ++..+||++++.+|.++++.|+++ +.+|||+|+
T Consensus 260 -~~~k~~~l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 334 (410)
T 2j0s_A 260 -EEWKFDTLCDLYDTLT---ITQAVIFCNTKRKVDWLTEKMREANFTVSSMHGDMPQKERESIMKEFRSG-ASRVLISTD 334 (410)
T ss_dssp -TTHHHHHHHHHHHHHT---SSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHHT-SSCEEEECG
T ss_pred -HHhHHHHHHHHHHhcC---CCcEEEEEcCHHHHHHHHHHHHhCCCceEEeeCCCCHHHHHHHHHHHHCC-CCCEEEECC
Confidence 1113445555665543 569999999999999999998 356799999999999999999997 899999999
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
++++|+|+|++++||+++.++ |+..|+||+||+||.|+ .+.++.+++.+.
T Consensus 335 ~~~~Gidi~~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~-------------~g~~~~~~~~~~ 384 (410)
T 2j0s_A 335 VWARGLDVPQVSLIINYDLPN-NRELYIHRIGRSGRYGR-------------KGVAINFVKNDD 384 (410)
T ss_dssp GGSSSCCCTTEEEEEESSCCS-SHHHHHHHHTTSSGGGC-------------CEEEEEEEEGGG
T ss_pred hhhCcCCcccCCEEEEECCCC-CHHHHHHhcccccCCCC-------------ceEEEEEecHHH
Confidence 999999999999999998876 99999999999999884 245566666544
No 15
>2db3_A ATP-dependent RNA helicase VASA; DEAD-BOX, protein-RNA complex, ATPase, riken structural genomics/proteomics initiative, RSGI; HET: ANP; 2.20A {Drosophila melanogaster}
Probab=100.00 E-value=1.1e-37 Score=324.50 Aligned_cols=318 Identities=16% Similarity=0.136 Sum_probs=222.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
.+|+|+|.++++.++.+. +.++++|||+|||++++.++... +.++|||+|+++|+.||.+++.++.
T Consensus 77 ~~pt~iQ~~ai~~i~~g~---d~i~~a~TGsGKT~a~~lpil~~l~~~~~~~~~~~~~~lil~PtreLa~Q~~~~~~~~~ 153 (434)
T 2db3_A 77 KIPTPIQKCSIPVISSGR---DLMACAQTGSGKTAAFLLPILSKLLEDPHELELGRPQVVIVSPTRELAIQIFNEARKFA 153 (434)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCCCCCTTCCSEEEECSSHHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEECCCCCCchHHHHHHHHHHHHhcccccccCCccEEEEecCHHHHHHHHHHHHHHh
Confidence 369999999999988764 89999999999999987766422 3479999999999999999999987
Q ss_pred CCCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----HH
Q 010367 93 TIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FR 163 (512)
Q Consensus 93 ~~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----~~ 163 (512)
......+..+.|+... .....++|+|+||+.|.....+. .+....++++|+||||++.... +.
T Consensus 154 ~~~~~~~~~~~gg~~~~~~~~~l~~~~~Ivv~Tp~~l~~~l~~~--------~~~l~~~~~lVlDEah~~~~~gf~~~~~ 225 (434)
T 2db3_A 154 FESYLKIGIVYGGTSFRHQNECITRGCHVVIATPGRLLDFVDRT--------FITFEDTRFVVLDEADRMLDMGFSEDMR 225 (434)
T ss_dssp TTSSCCCCEECTTSCHHHHHHHHTTCCSEEEECHHHHHHHHHTT--------SCCCTTCCEEEEETHHHHTSTTTHHHHH
T ss_pred ccCCcEEEEEECCCCHHHHHHHhhcCCCEEEEChHHHHHHHHhC--------CcccccCCeEEEccHhhhhccCcHHHHH
Confidence 5555567777776432 13456899999999886532111 1123578999999999988654 44
Q ss_pred HHHHhc---ccceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhch
Q 010367 164 KVISLT---KSHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (512)
Q Consensus 164 ~~l~~~---~~~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (512)
.++..+ ...+++++|||+....... ...++ .+........ ......+......+.
T Consensus 226 ~i~~~~~~~~~~q~l~~SAT~~~~~~~~--~~~~l~~~~~i~~~~~----~~~~~~i~~~~~~~~--------------- 284 (434)
T 2db3_A 226 RIMTHVTMRPEHQTLMFSATFPEEIQRM--AGEFLKNYVFVAIGIV----GGACSDVKQTIYEVN--------------- 284 (434)
T ss_dssp HHHHCTTSCSSCEEEEEESCCCHHHHHH--HHTTCSSCEEEEESST----TCCCTTEEEEEEECC---------------
T ss_pred HHHHhcCCCCCceEEEEeccCCHHHHHH--HHHhccCCEEEEeccc----cccccccceEEEEeC---------------
Confidence 555543 3457899999996432211 11111 1222111110 011111221122221
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCC
Q 010367 240 KKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRD 314 (512)
Q Consensus 240 ~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~ 314 (512)
...|...+..++... +.++||||+++..++.+++.| .+..+||++++.+|.+++++|+++ +
T Consensus 285 ---------~~~k~~~l~~~l~~~----~~~~lVF~~t~~~a~~l~~~L~~~~~~~~~lhg~~~~~~R~~~l~~F~~g-~ 350 (434)
T 2db3_A 285 ---------KYAKRSKLIEILSEQ----ADGTIVFVETKRGADFLASFLSEKEFPTTSIHGDRLQSQREQALRDFKNG-S 350 (434)
T ss_dssp ---------GGGHHHHHHHHHHHC----CTTEEEECSSHHHHHHHHHHHHHTTCCEEEESTTSCHHHHHHHHHHHHTS-S
T ss_pred ---------cHHHHHHHHHHHHhC----CCCEEEEEeCcHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHHHcC-C
Confidence 112334444444433 345999999999999999998 245799999999999999999997 8
Q ss_pred ccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHH
Q 010367 315 LNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTK 394 (512)
Q Consensus 315 ~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~ 394 (512)
.+|||+|+++++|+|+|++++||+++.++ |...|+||+||+||.|+ ....+.+++.+. +..+...
T Consensus 351 ~~vLvaT~v~~rGlDi~~v~~VI~~d~p~-~~~~y~qriGR~gR~g~-------------~G~a~~~~~~~~-~~~~~~~ 415 (434)
T 2db3_A 351 MKVLIATSVASRGLDIKNIKHVINYDMPS-KIDDYVHRIGRTGRVGN-------------NGRATSFFDPEK-DRAIAAD 415 (434)
T ss_dssp CSEEEECGGGTSSCCCTTCCEEEESSCCS-SHHHHHHHHTTSSCTTC-------------CEEEEEEECTTT-CGGGHHH
T ss_pred CcEEEEchhhhCCCCcccCCEEEEECCCC-CHHHHHHHhcccccCCC-------------CCEEEEEEeccc-cHHHHHH
Confidence 99999999999999999999999998876 99999999999999984 244556666432 2233334
Q ss_pred HHHHHHhc
Q 010367 395 RQQFLIDQ 402 (512)
Q Consensus 395 r~~~l~~~ 402 (512)
-.+.|...
T Consensus 416 l~~~l~~~ 423 (434)
T 2db3_A 416 LVKILEGS 423 (434)
T ss_dssp HHHHHHHT
T ss_pred HHHHHHHc
Confidence 44555543
No 16
>4a2w_A RIG-I, retinoic acid inducible protein I; hydrolase, superfamily 2 RNA helicase, ATP and dsRNA binding antiviral signalling pathway; 3.70A {Anas platyrhynchos}
Probab=100.00 E-value=3e-37 Score=348.39 Aligned_cols=343 Identities=16% Similarity=0.184 Sum_probs=201.1
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
...++|||||.++++.++.+. ++++++|||+|||++++.++... ++++|||||+++|+.||.++|.+++
T Consensus 244 ~~~~~~r~~Q~~ai~~il~g~---~~ll~a~TGsGKTl~~~~~i~~~l~~~~~~~~~~vLvl~Pt~~L~~Q~~~~~~~~~ 320 (936)
T 4a2w_A 244 YETKKARSYQIELAQPAINGK---NALICAPTGSGKTFVSILICEHHFQNMPAGRKAKVVFLATKVPVYEQQKNVFKHHF 320 (936)
T ss_dssp ----CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHTTTTTCCSSCCCCEEEECSSHHHHHHHHHHHHHHH
T ss_pred cCCCCCCHHHHHHHHHHHcCC---CEEEEeCCCchHHHHHHHHHHHHHHhccccCCCeEEEEeCCHHHHHHHHHHHHHHh
Confidence 346799999999999998764 89999999999999999998765 6789999999999999999999997
Q ss_pred CCCCCcEEEEcCCccccc-----cCCCeEEEEchhhhhccCCCchhHHHHHHHH-hcCCccEEEEcCCCCCCch-HHHHH
Q 010367 93 TIQDDQICRFTSDSKERF-----RGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKV 165 (512)
Q Consensus 93 ~~~~~~v~~~~~~~~~~~-----~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~lvIiDEaH~~~~~-~~~~~ 165 (512)
......+..++|+..... ...++|+|+||++|.....+. .+ ....+++||+||||++.+. .+..+
T Consensus 321 ~~~~~~v~~~~G~~~~~~~~~~~~~~~~IvI~Tp~~L~~~l~~~--------~~~~l~~~~liViDEaH~~~~~~~~~~i 392 (936)
T 4a2w_A 321 ERQGYSVQGISGENFSNVSVEKVIEDSDIIVVTPQILVNSFEDG--------TLTSLSIFTLMIFDECHNTTGNHPYNVL 392 (936)
T ss_dssp HTTTCCEEEECCC-----CCHHHHHHCSEEEECHHHHHHHHHSS--------SCCCGGGCSEEEEETGGGCSTTCHHHHH
T ss_pred cccCceEEEEECCcchhhHHHHhccCCCEEEecHHHHHHHHHcC--------ccccccCCCEEEEECccccCCCccHHHH
Confidence 555567888888764321 245789999999987542110 01 1246799999999999865 45444
Q ss_pred HHhc---------ccceEEEEcccCCCCcch--------HhhhHhhhCCceeee---cHHHHHhCCCcccceeEEEEcC-
Q 010367 166 ISLT---------KSHCKLGLTATLVREDER--------ITDLNFLIGPKLYEA---NWLDLVKGGFIANVQCAEVWCP- 224 (512)
Q Consensus 166 l~~~---------~~~~~l~LTATp~~~~~~--------~~~l~~l~gp~~~~~---~~~~l~~~~~l~~~~~~~~~~~- 224 (512)
+..+ ...++|+|||||.+.+.. +..+...++...... ...++.. ++..+....+.+.
T Consensus 393 ~~~~~~~~~~~~~~~~~~l~LSATp~~~~~~~l~~~~~~i~~L~~~L~~~~i~~~~~~~~~l~~--~~~~p~~~~~~~~~ 470 (936)
T 4a2w_A 393 MTRYLEQKFNSASQLPQILGLTASVGVGNAKNIEETIEHICSLCSYLDIQAISTVRENIQELQR--FMNKPEIDVRLVKR 470 (936)
T ss_dssp HHHHHHHHHTTCSCCCEEEEEESCCCCTTCCSHHHHHHHHHHHHHHHTCSEEECCCSSHHHHHH--HSCCCCEEEEECCC
T ss_pred HHHHHHHhhccCCCcCeEEEecCCcccccchhHHHHHHHHHHHHHhcCCceeecccccHHHHHH--hccCCcceEEeccc
Confidence 4322 225799999999765421 222333444322221 1122222 2222222222222
Q ss_pred -CCHH------------------------------------HHHHHHHhhc-------------------------h---
Q 010367 225 -MTKE------------------------------------FFSEYLKKEN-------------------------S--- 239 (512)
Q Consensus 225 -~~~~------------------------------------~~~~~l~~~~-------------------------~--- 239 (512)
.... .|..++.... .
T Consensus 471 ~~~~~~~~~l~~l~~~i~~~~~~~l~~~~l~~~~~~~~g~~~y~~~l~~l~k~~~~~~l~~~~~~~~~~~~l~~~~~~l~ 550 (936)
T 4a2w_A 471 RIHNPFAAIISNLMSETEALMRTIAYVDTLSQNSKKDFGTQNYEHWIVVTQRKCRLLQLEDKEEESRICRALFICTEHLR 550 (936)
T ss_dssp CSCCHHHHHHHHHHHHHHHHHHHC------------CCSSHHHHHHHHHHHHHHHHCCCSCHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcHHHHHHHHHHHHHHHHHHHHHhhhhhhhccccccchHHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHHH
Confidence 1100 0010110000 0
Q ss_pred -----------------------------------HHHHHH----------------hhcCcchHHHHHHHHHHh-hhcC
Q 010367 240 -----------------------------------KKKQAL----------------YVMNPNKFRACEFLIRFH-EQQR 267 (512)
Q Consensus 240 -----------------------------------~~~~~~----------------~~~~~~k~~~l~~ll~~~-~~~~ 267 (512)
..+.+. ......|+..+..++... ....
T Consensus 551 ~~~~al~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~e~~l~~~~~~~~~~l~~~~~~~~~~~~K~~~L~~lL~~~~~~~~ 630 (936)
T 4a2w_A 551 KYNDALIISEDARIIDALSYLTEFFTNVKNGPYTELEQHLTAKFQEKEPELIALSKDETNENPKLEELVCILDDAYRYNP 630 (936)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTSTTCCCHHHHHHHHHHHHTTTSCT
T ss_pred HHHHHHhhhcchhHHHHHHHHHHHHHHHhhccCCHHHHHHHHHHHHHHHHHHHhhhccCCCCHHHHHHHHHHHHHhccCC
Confidence 000000 001245777777777543 2245
Q ss_pred CCeEEEEecCHHHHHHHHHHhCC-----------------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccC
Q 010367 268 GDKIIVFADNLFALTEYAMKLRK-----------------PMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (512)
Q Consensus 268 g~k~iVf~~~~~~~~~l~~~L~~-----------------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDl 330 (512)
+.++||||+++.+++.++..|.. ..+||++++.+|.+++++|+.++.++|||+|+++++|||+
T Consensus 631 ~~rvLIF~~t~~~ae~L~~~L~~~~~l~~ik~~~l~G~~~~~~hg~m~~~eR~~il~~Fr~~g~~~VLVaT~~~~eGIDl 710 (936)
T 4a2w_A 631 QTRTLLFAKTRALVSALKKCMEENPILNYIKPGVLMGRGRRDQTTGMTLPSQKGVLDAFKTSKDNRLLIATSVADEGIDI 710 (936)
T ss_dssp TCCEEEEESSHHHHHHHHHHHHHCSTTSSCCCEEC----------------------------CCSEEEEECC------C
T ss_pred CCeEEEEeCCHHHHHHHHHHHhhCccccccceeEEecCCCcccCCCCCHHHHHHHHHHhhccCCeeEEEEeCchhcCCcc
Confidence 78999999999999999999831 2368889999999999999993389999999999999999
Q ss_pred ccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHH
Q 010367 331 PEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYS 392 (512)
Q Consensus 331 p~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~ 392 (512)
|++++||+++.++ |+..|+||+|| ||.. .+.+|.+++.++.++.+.
T Consensus 711 p~v~~VI~yD~p~-s~~~~iQr~GR-GR~~--------------~g~vi~Li~~~t~ee~~~ 756 (936)
T 4a2w_A 711 VQCNLVVLYEYSG-NVTKMIQVRGR-GRAA--------------GSKCILVTSKTEVVENEK 756 (936)
T ss_dssp CCCSEEEEESCCS-CSHHHHCC----------------------CCCEEEEESCHHHHHHHH
T ss_pred hhCCEEEEeCCCC-CHHHHHHhcCC-CCCC--------------CCEEEEEEeCCCHHHHHH
Confidence 9999999999887 99999999999 8875 244677889988877433
No 17
>2z0m_A 337AA long hypothetical ATP-dependent RNA helicase DEAD; ATP-binding, hydrolase, nucleotide-binding, RNA binding protein, structural genomics; 1.90A {Sulfolobus tokodaii}
Probab=100.00 E-value=1.3e-37 Score=312.38 Aligned_cols=287 Identities=16% Similarity=0.165 Sum_probs=211.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
.+|+|||.++++.++.+. ++++.+|||+|||++++.++...+.++||++|+++|+.||.+++.++.......+..+.
T Consensus 15 ~~l~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~~~~~~~~~~~~~ 91 (337)
T 2z0m_A 15 KNFTEVQSKTIPLMLQGK---NVVVRAKTGSGKTAAYAIPILELGMKSLVVTPTRELTRQVASHIRDIGRYMDTKVAEVY 91 (337)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHTCCEEEECSSHHHHHHHHHHHHHHTTTSCCCEEEEC
T ss_pred CCCCHHHHHHHHHHhcCC---CEEEEcCCCCcHHHHHHHHHHhhcCCEEEEeCCHHHHHHHHHHHHHHhhhcCCcEEEEE
Confidence 469999999999988764 89999999999999999999888899999999999999999999998755556778787
Q ss_pred CCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----HHHHHhccc-ceE
Q 010367 104 SDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLTKS-HCK 174 (512)
Q Consensus 104 ~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~----~~~l~~~~~-~~~ 174 (512)
++.... ....++|+|+||+.+.....+ ..+....++++|+||||++....+ ..++..+.. ...
T Consensus 92 ~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~~~~~~ 163 (337)
T 2z0m_A 92 GGMPYKAQINRVRNADIVVATPGRLLDLWSK--------GVIDLSSFEIVIIDEADLMFEMGFIDDIKIILAQTSNRKIT 163 (337)
T ss_dssp TTSCHHHHHHHHTTCSEEEECHHHHHHHHHT--------TSCCGGGCSEEEEESHHHHHHTTCHHHHHHHHHHCTTCSEE
T ss_pred CCcchHHHHhhcCCCCEEEECHHHHHHHHHc--------CCcchhhCcEEEEEChHHhhccccHHHHHHHHhhCCcccEE
Confidence 764321 123588999999988653111 111125789999999999875533 334444443 456
Q ss_pred EEEcccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchH
Q 010367 175 LGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253 (512)
Q Consensus 175 l~LTATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~ 253 (512)
+++||||...... .+..+++. ...... ..........+.++... .
T Consensus 164 ~~~SAT~~~~~~~--~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~-------------------------~ 209 (337)
T 2z0m_A 164 GLFSATIPEEIRK--VVKDFITNYEEIEAC-------IGLANVEHKFVHVKDDW-------------------------R 209 (337)
T ss_dssp EEEESCCCHHHHH--HHHHHSCSCEEEECS-------GGGGGEEEEEEECSSSS-------------------------H
T ss_pred EEEeCcCCHHHHH--HHHHhcCCceeeecc-------cccCCceEEEEEeChHH-------------------------H
Confidence 7889999743221 22222222 111110 01111122222221110 0
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCcc
Q 010367 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPE 332 (512)
Q Consensus 254 ~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~ 332 (512)
..+ ..+ ....+.++||||+++..++.+++.|. +..+||+++..+|.+++++|+++ +.+|||+|+++++|+|+|+
T Consensus 210 ~~~-~~~---~~~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~~~Gid~~~ 284 (337)
T 2z0m_A 210 SKV-QAL---RENKDKGVIVFVRTRNRVAKLVRLFDNAIELRGDLPQSVRNRNIDAFREG-EYDMLITTDVASRGLDIPL 284 (337)
T ss_dssp HHH-HHH---HTCCCSSEEEECSCHHHHHHHHTTCTTEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECHHHHTTCCCCC
T ss_pred HHH-HHH---HhCCCCcEEEEEcCHHHHHHHHHHhhhhhhhcCCCCHHHHHHHHHHHHcC-CCcEEEEcCccccCCCccC
Confidence 011 111 11457899999999999999999995 55799999999999999999997 8999999999999999999
Q ss_pred ccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 333 ANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 333 ~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+++||+++.++ |+..|.||+||+||.|+
T Consensus 285 ~~~Vi~~~~~~-s~~~~~Q~~GR~gR~g~ 312 (337)
T 2z0m_A 285 VEKVINFDAPQ-DLRTYIHRIGRTGRMGR 312 (337)
T ss_dssp BSEEEESSCCS-SHHHHHHHHTTBCGGGC
T ss_pred CCEEEEecCCC-CHHHhhHhcCccccCCC
Confidence 99999998877 99999999999999984
No 18
>1hv8_A Putative ATP-dependent RNA helicase MJ0669; RNA-binding protein, ATPase, RNA binding protein; 3.00A {Methanocaldococcus jannaschii} SCOP: c.37.1.19 c.37.1.19
Probab=100.00 E-value=4.6e-37 Score=311.89 Aligned_cols=289 Identities=19% Similarity=0.179 Sum_probs=212.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.+|+|+|.++++.++.++ +++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++++.....
T Consensus 27 ~~~~~~Q~~~i~~~~~~~--~~~l~~~~TGsGKT~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~~ 104 (367)
T 1hv8_A 27 EKPTDIQMKVIPLFLNDE--YNIVAQARTGSGKTASFAIPLIELVNENNGIEAIILTPTRELAIQVADEIESLKGNKNLK 104 (367)
T ss_dssp CSCCHHHHHHHHHHHHTC--SEEEEECCSSSSHHHHHHHHHHHHSCSSSSCCEEEECSCHHHHHHHHHHHHHHHCSSCCC
T ss_pred CCCCHHHHHHHHHHhCCC--CCEEEECCCCChHHHHHHHHHHHHhcccCCCcEEEEcCCHHHHHHHHHHHHHHhCCCCce
Confidence 479999999999999874 389999999999999988777654 4589999999999999999999998766667
Q ss_pred EEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----HHHHHhc-
Q 010367 99 ICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVISLT- 169 (512)
Q Consensus 99 v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~----~~~l~~~- 169 (512)
+..+.++.... .....+|+|+||+.+.....+ ..+....++++|+||||++.+..+ ..++..+
T Consensus 105 v~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~ 176 (367)
T 1hv8_A 105 IAKIYGGKAIYPQIKALKNANIVVGTPGRILDHINR--------GTLNLKNVKYFILDEADEMLNMGFIKDVEKILNACN 176 (367)
T ss_dssp EEEECTTSCHHHHHHHHHTCSEEEECHHHHHHHHHT--------TCSCTTSCCEEEEETHHHHHTTTTHHHHHHHHHTSC
T ss_pred EEEEECCcchHHHHhhcCCCCEEEecHHHHHHHHHc--------CCcccccCCEEEEeCchHhhhhchHHHHHHHHHhCC
Confidence 78777765421 113578999999988643211 011235789999999999876543 3344433
Q ss_pred ccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcC
Q 010367 170 KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (512)
Q Consensus 170 ~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 249 (512)
...++++|||||.+.... .+..+++...+... .....+....+.+. .
T Consensus 177 ~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~------------------------~ 223 (367)
T 1hv8_A 177 KDKRILLFSATMPREILN--LAKKYMGDYSFIKA-------KINANIEQSYVEVN------------------------E 223 (367)
T ss_dssp SSCEEEEECSSCCHHHHH--HHHHHCCSEEEEEC-------CSSSSSEEEEEECC------------------------G
T ss_pred CCceEEEEeeccCHHHHH--HHHHHcCCCeEEEe-------cCCCCceEEEEEeC------------------------h
Confidence 345789999999753221 22233332211100 01111111111111 1
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..|+..+..++ . ..+.++||||+++..++.+++.| ++..+||+++..+|.++++.|+++ +.+|||+|+++
T Consensus 224 ~~~~~~l~~~l---~-~~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~~~ 298 (367)
T 1hv8_A 224 NERFEALCRLL---K-NKEFYGLVFCKTKRDTKELASMLRDIGFKAGAIHGDLSQSQREKVIRLFKQK-KIRILIATDVM 298 (367)
T ss_dssp GGHHHHHHHHH---C-STTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECSSSCHHHHHHHHHHHHTT-SSSEEEECTTH
T ss_pred HHHHHHHHHHH---h-cCCCcEEEEECCHHHHHHHHHHHHhcCCCeEEeeCCCCHHHHHHHHHHHHcC-CCeEEEECChh
Confidence 12333333333 3 55789999999999999999998 345799999999999999999997 89999999999
Q ss_pred cccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|+|++++||+++.++ |+..|.||+||++|.|+
T Consensus 299 ~~Gid~~~~~~Vi~~~~~~-s~~~~~Q~~GR~~R~g~ 334 (367)
T 1hv8_A 299 SRGIDVNDLNCVINYHLPQ-NPESYMHRIGRTGRAGK 334 (367)
T ss_dssp HHHCCCSCCSEEEESSCCS-CHHHHHHHSTTTCCSSS
T ss_pred hcCCCcccCCEEEEecCCC-CHHHhhhcccccccCCC
Confidence 9999999999999998877 99999999999999984
No 19
>3eiq_A Eukaryotic initiation factor 4A-I; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Homo sapiens}
Probab=100.00 E-value=1e-37 Score=322.31 Aligned_cols=305 Identities=12% Similarity=0.086 Sum_probs=204.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
..|+|||.+++..++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++..++.....
T Consensus 61 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 137 (414)
T 3eiq_A 61 EKPSAIQQRAILPCIKGY---DVIAQAQSGTGKTATFAISILQQIELDLKATQALVLAPTRELAQQIQKVVMALGDYMGA 137 (414)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEECCCSCSSSHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHGGGSCC
T ss_pred CCCCHHHHHHhHHHhCCC---CEEEECCCCCcccHHHHHHHHHHHhhcCCceeEEEEeChHHHHHHHHHHHHHHhcccCc
Confidence 479999999999998865 89999999999999987777542 357999999999999999999999766666
Q ss_pred cEEEEcCCcccc------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----HHHHHH
Q 010367 98 QICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVIS 167 (512)
Q Consensus 98 ~v~~~~~~~~~~------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----~~~~l~ 167 (512)
.+....++.... ....++|+|+|++.|..... ...+....+++||+||||++.+.. +..++.
T Consensus 138 ~~~~~~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~l~--------~~~~~~~~~~~vViDEah~~~~~~~~~~~~~~~~ 209 (414)
T 3eiq_A 138 SCHACIGGTNVRAEVQKLQMEAPHIIVGTPGRVFDMLN--------RRYLSPKYIKMFVLDEADEMLSRGFKDQIYDIFQ 209 (414)
T ss_dssp CEEECCCCTTHHHHHHHHTTTCCSEEEECHHHHHHHHH--------HTSSCSTTCCEEEECSHHHHHHTTTHHHHHHHHT
T ss_pred eEEEEECCcchHHHHHHHhcCCCCEEEECHHHHHHHHH--------cCCcccccCcEEEEECHHHhhccCcHHHHHHHHH
Confidence 677766654321 12568999999998864311 111223568999999999986553 334444
Q ss_pred hc-ccceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 168 LT-KSHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 168 ~~-~~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
.+ ...++++|||||...... .+..+++ |........ ...........+.+..
T Consensus 210 ~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~-------------------- 263 (414)
T 3eiq_A 210 KLNSNTQVVLLSATMPSDVLE--VTKKFMRDPIRILVKKE----ELTLEGIRQFYINVER-------------------- 263 (414)
T ss_dssp TSCTTCEEEEECSCCCHHHHH--HHTTTCSSCEEECCCCC----CCCTTSCCEEEEECSS--------------------
T ss_pred hCCCCCeEEEEEEecCHHHHH--HHHHHcCCCEEEEecCC----ccCCCCceEEEEEeCh--------------------
Confidence 44 345789999999632211 1111221 111111000 0000011111111110
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
...|...+..++... .+.++||||+++..++.+++.| ++..+||++++.+|.++++.|+++ ..+|||+
T Consensus 264 ---~~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~h~~~~~~~r~~~~~~f~~g-~~~vlv~ 336 (414)
T 3eiq_A 264 ---EEWKLDTLCDLYETL---TITQAVIFINTRRKVDWLTEKMHARDFTVSAMHGDMDQKERDVIMREFRSG-SSRVLIT 336 (414)
T ss_dssp ---STTHHHHHHHHHHSS---CCSSCEEECSCHHHHHHHHHHHHTTTCCCEEC---CHHHHHHHHHHHHSCC----CEEE
T ss_pred ---HHhHHHHHHHHHHhC---CCCcEEEEeCCHHHHHHHHHHHHhcCCeEEEecCCCCHHHHHHHHHHHHcC-CCcEEEE
Confidence 112344455555433 4679999999999999999998 355799999999999999999997 8999999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
|+++++|+|+|++++||+++.++ |+..|+||+||++|.|+ .+..|.+++.+.
T Consensus 337 T~~~~~Gidip~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~-------------~g~~~~~~~~~~ 388 (414)
T 3eiq_A 337 TDLLARGIDVQQVSLVINYDLPT-NRENYIHRIGRGGRFGR-------------KGVAINMVTEED 388 (414)
T ss_dssp CSSCC--CCGGGCSCEEESSCCS-STHHHHHHSCCC--------------------CEEEEECSTH
T ss_pred CCccccCCCccCCCEEEEeCCCC-CHHHhhhhcCcccCCCC-------------CceEEEEEcHHH
Confidence 99999999999999999998877 99999999999999884 244566676654
No 20
>2i4i_A ATP-dependent RNA helicase DDX3X; DEAD, structural genomics, SGC, structural GE consortium, hydrolase; HET: AMP; 2.20A {Homo sapiens}
Probab=100.00 E-value=1.1e-36 Score=314.98 Aligned_cols=293 Identities=16% Similarity=0.156 Sum_probs=209.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------------------------CCCEEEEEcChh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------------------------KKSCLCLATNAV 79 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------------------------~~~~Lvl~P~~~ 79 (512)
..|+|+|.++++.++.+. ++++.+|||+|||++++.++... ..++||++|+++
T Consensus 36 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lil~Pt~~ 112 (417)
T 2i4i_A 36 TRPTPVQKHAIPIIKEKR---DLMACAQTGSGKTAAFLLPILSQIYSDGPGEALRAMKENGRYGRRKQYPISLVLAPTRE 112 (417)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHHCCCHHHHHHHHCBTTBSCSBCCSEEEECSSHH
T ss_pred CCCCHHHHHHHHHHccCC---CEEEEcCCCCHHHHHHHHHHHHHHHhccccchhhccccccccccccCCccEEEECCcHH
Confidence 489999999999988764 89999999999999887666321 146999999999
Q ss_pred hHHHHHHHHHHhhCCCCCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCC
Q 010367 80 SVDQWAFQFKLWSTIQDDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV 154 (512)
Q Consensus 80 L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEa 154 (512)
|+.||.+++.++.......+..+.|+... .+...++|+|+||+.|.....+ ..+....+++||+|||
T Consensus 113 L~~q~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~~iViDEa 184 (417)
T 2i4i_A 113 LAVQIYEEARKFSYRSRVRPCVVYGGADIGQQIRDLERGCHLLVATPGRLVDMMER--------GKIGLDFCKYLVLDEA 184 (417)
T ss_dssp HHHHHHHHHHHHHTTSSCCEEEECSSSCHHHHHHHHTTCCSEEEECHHHHHHHHHT--------TSBCCTTCCEEEESSH
T ss_pred HHHHHHHHHHHHhCcCCceEEEEECCCCHHHHHHHhhCCCCEEEEChHHHHHHHHc--------CCcChhhCcEEEEECh
Confidence 99999999999876556677777776532 1245688999999988653211 1112356789999999
Q ss_pred CCCCchHH----HHHHHhc--c---cceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcC
Q 010367 155 HVVPAHMF----RKVISLT--K---SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCP 224 (512)
Q Consensus 155 H~~~~~~~----~~~l~~~--~---~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~ 224 (512)
|++....| ..++... . ..+++++|||+.+.... .+..+++ |.......... ....+....++++
T Consensus 185 h~~~~~~~~~~~~~i~~~~~~~~~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~----~~~~i~~~~~~~~ 258 (417)
T 2i4i_A 185 DRMLDMGFEPQIRRIVEQDTMPPKGVRHTMMFSATFPKEIQM--LARDFLDEYIFLAVGRVGS----TSENITQKVVWVE 258 (417)
T ss_dssp HHHHHTTCHHHHHHHHTSSSCCCBTTBEEEEEESCCCHHHHH--HHHHHCSSCEEEEEC--------CCSSEEEEEEECC
T ss_pred hHhhccCcHHHHHHHHHhccCCCcCCcEEEEEEEeCCHHHHH--HHHHHcCCCEEEEeCCCCC----CccCceEEEEEec
Confidence 99876544 3333321 1 34689999999643221 1222232 22222111000 1111111222221
Q ss_pred CCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCH
Q 010367 225 MTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSH 299 (512)
Q Consensus 225 ~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~ 299 (512)
...|...+..++... ..+.++||||+++..++.+++.| .+..+||++++
T Consensus 259 ------------------------~~~~~~~l~~~l~~~--~~~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~h~~~~~ 312 (417)
T 2i4i_A 259 ------------------------ESDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQ 312 (417)
T ss_dssp ------------------------GGGHHHHHHHHHHTC--CTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCH
T ss_pred ------------------------cHhHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHCCCCeeEecCCCCH
Confidence 122334555555543 35789999999999999999998 34579999999
Q ss_pred HHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
.+|.++++.|+++ +.+|||+|+++++|+|+|++++||+++.++ |...|+||+||++|.|+
T Consensus 313 ~~r~~~~~~f~~g-~~~vlvaT~~~~~Gidip~v~~Vi~~~~p~-s~~~~~Qr~GR~gR~g~ 372 (417)
T 2i4i_A 313 RDREEALHQFRSG-KSPILVATAVAARGLDISNVKHVINFDLPS-DIEEYVHRIGRTGRVGN 372 (417)
T ss_dssp HHHHHHHHHHHHT-SSCEEEECHHHHTTSCCCCEEEEEESSCCS-SHHHHHHHHTTBCC--C
T ss_pred HHHHHHHHHHHcC-CCCEEEECChhhcCCCcccCCEEEEEcCCC-CHHHHHHhcCccccCCC
Confidence 9999999999997 899999999999999999999999998876 99999999999999984
No 21
>3pey_A ATP-dependent RNA helicase DBP5; RECA, DEAD-BOX, ATPase, helicase, mRNA-export, nuclear pore, hydrolase-RNA complex; HET: ADP; 1.40A {Saccharomyces cerevisiae} PDB: 3pew_A* 3pex_A* 3pez_A* 3rrm_A* 3rrn_A* 2kbe_A 3gfp_A 2kbf_A 3pev_A* 3peu_A*
Probab=100.00 E-value=2.6e-36 Score=309.38 Aligned_cols=296 Identities=17% Similarity=0.168 Sum_probs=209.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.+|+|+|.++++.++.++ .+++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++......
T Consensus 26 ~~~~~~Q~~~i~~~~~~~-~~~~lv~a~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 104 (395)
T 3pey_A 26 QKPSKIQERALPLLLHNP-PRNMIAQSQSGTGKTAAFSLTMLTRVNPEDASPQAICLAPSRELARQTLEVVQEMGKFTKI 104 (395)
T ss_dssp CSCCHHHHHHHHHHHCSS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCcHHHHHHHHHHHHhccCCCCccEEEECCCHHHHHHHHHHHHHHhcccCe
Confidence 589999999999998762 2489999999999999988777543 358999999999999999999998766666
Q ss_pred cEEEEcCCcccc-ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-h----HHHHHHHhcc-
Q 010367 98 QICRFTSDSKER-FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H----MFRKVISLTK- 170 (512)
Q Consensus 98 ~v~~~~~~~~~~-~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-~----~~~~~l~~~~- 170 (512)
.+....++.... ....++|+|+||+.+.....+ ..+...++++||+||||++.. . .+..+...++
T Consensus 105 ~~~~~~~~~~~~~~~~~~~iiv~T~~~l~~~~~~--------~~~~~~~~~~iIiDEah~~~~~~~~~~~~~~~~~~~~~ 176 (395)
T 3pey_A 105 TSQLIVPDSFEKNKQINAQVIVGTPGTVLDLMRR--------KLMQLQKIKIFVLDEADNMLDQQGLGDQCIRVKRFLPK 176 (395)
T ss_dssp CEEEESTTSSCTTSCBCCSEEEECHHHHHHHHHT--------TCBCCTTCCEEEEETHHHHHHSTTHHHHHHHHHHTSCT
T ss_pred eEEEEecCchhhhccCCCCEEEEcHHHHHHHHHc--------CCcccccCCEEEEEChhhhcCccccHHHHHHHHHhCCC
Confidence 677766654322 234688999999988643211 111135789999999998875 2 3333444443
Q ss_pred cceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcC
Q 010367 171 SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMN 249 (512)
Q Consensus 171 ~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 249 (512)
..++++|||||...... ....+++ +......... ............+. ..
T Consensus 177 ~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~-~~---------------------- 227 (395)
T 3pey_A 177 DTQLVLFSATFADAVRQ--YAKKIVPNANTLELQTNE----VNVDAIKQLYMDCK-NE---------------------- 227 (395)
T ss_dssp TCEEEEEESCCCHHHHH--HHHHHSCSCEEECCCGGG----CSCTTEEEEEEECS-SH----------------------
T ss_pred CcEEEEEEecCCHHHHH--HHHHhCCCCeEEEccccc----cccccccEEEEEcC-ch----------------------
Confidence 35789999999642211 1122221 1111111100 01111111111111 00
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..+...+..++.. ..+.++||||+++..++.+++.| ++..+||++++.+|.++++.|+++ +.+|||+|+++
T Consensus 228 ~~~~~~l~~~~~~---~~~~~~lvf~~~~~~~~~l~~~l~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 303 (395)
T 3pey_A 228 ADKFDVLTELYGL---MTIGSSIIFVATKKTANVLYGKLKSEGHEVSILHGDLQTQERDRLIDDFREG-RSKVLITTNVL 303 (395)
T ss_dssp HHHHHHHHHHHTT---TTSSEEEEECSCHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCCEEEECGGG
T ss_pred HHHHHHHHHHHHh---ccCCCEEEEeCCHHHHHHHHHHHHhcCCcEEEeCCCCCHHHHHHHHHHHHCC-CCCEEEECChh
Confidence 1122334444433 34679999999999999999998 356799999999999999999997 89999999999
Q ss_pred cccccCccccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~-----~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|+|++++||+++.++ .|+..|+||+||++|.|+
T Consensus 304 ~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 345 (395)
T 3pey_A 304 ARGIDIPTVSMVVNYDLPTLANGQADPATYIHRIGRTGRFGR 345 (395)
T ss_dssp SSSCCCTTEEEEEESSCCBCTTSSBCHHHHHHHHTTSSCTTC
T ss_pred hcCCCcccCCEEEEcCCCCCCcCCCCHHHhhHhccccccCCC
Confidence 9999999999999997663 288999999999999884
No 22
>4gl2_A Interferon-induced helicase C domain-containing P; MDA5, dsRNA, anti-viral signaling, RIG-I, MAVS, oligomerizat helicase, ATPase; HET: ANP; 3.56A {Homo sapiens}
Probab=100.00 E-value=2.2e-36 Score=333.51 Aligned_cols=329 Identities=19% Similarity=0.227 Sum_probs=209.2
Q ss_pred CCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----C----CCEEEEEcChhhHHHH-HHHHHHh
Q 010367 22 PHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----K----KSCLCLATNAVSVDQW-AFQFKLW 91 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~----~~~Lvl~P~~~L~~Qw-~~~~~~~ 91 (512)
..++|||||.++++.++.+. ++++++|||+|||++++.++... . +++|||+|+++|+.|| .++|.++
T Consensus 4 ~~~~l~~~Q~~~i~~il~g~---~~ll~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~vlvl~P~~~L~~Q~~~~~l~~~ 80 (699)
T 4gl2_A 4 AMLQLRPYQMEVAQPALEGK---NIIICLPTGCGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQPF 80 (699)
T ss_dssp ---CCCHHHHHHHHHHHSSC---CEEECCCTTSCHHHHHHHHHHHHHHHHHHHTCCCCBCCEESCSHHHHHHHHHTHHHH
T ss_pred CCCCccHHHHHHHHHHHhCC---CEEEEcCCCCcHHHHHHHHHHHHHHhccccCCCCeEEEEECCHHHHHHHHHHHHHHH
Confidence 46899999999999999864 89999999999999998888553 2 7899999999999999 9999999
Q ss_pred hCCCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----H
Q 010367 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----M 161 (512)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~ 161 (512)
++. ...+..++|+.... ..+..+|+|+||++|.....+... .....+....|++||+||||++... .
T Consensus 81 ~~~-~~~v~~~~g~~~~~~~~~~~~~~~~Ilv~Tp~~L~~~l~~~~~--~~~~~~~~~~~~lvViDEaH~~~~~~~~~~i 157 (699)
T 4gl2_A 81 LKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLEN--GEDAGVQLSDFSLIIIDECHHTNKEAVYNNI 157 (699)
T ss_dssp HTT-TSCEEEEC----CCCCHHHHHHSCSEEEEEHHHHHHHTC----------CCCGGGCSEEEEESGGGCBTTBSSCSH
T ss_pred cCc-CceEEEEeCCcchhhHHHhhhcCCCEEEECHHHHHHHHhcccc--ccccceecccCcEEEEECccccCccchHHHH
Confidence 754 35788888875432 225689999999999865322100 0112223367899999999997642 1
Q ss_pred HHHHHHhc--------------ccceEEEEcccCCCCcch--------HhhhHhhhCC-ceeeec--HHHHHhCCCcccc
Q 010367 162 FRKVISLT--------------KSHCKLGLTATLVREDER--------ITDLNFLIGP-KLYEAN--WLDLVKGGFIANV 216 (512)
Q Consensus 162 ~~~~l~~~--------------~~~~~l~LTATp~~~~~~--------~~~l~~l~gp-~~~~~~--~~~l~~~~~l~~~ 216 (512)
....+... +...+|+|||||...+.. +..+...+++ .+.... ..++.. ++...
T Consensus 158 ~~~~l~~~~~~~~~~~~~~~~~~~~~il~lTATp~~~~~~~~~~~~~~i~~l~~~l~~~~i~~~~~~~~~l~~--~~~~p 235 (699)
T 4gl2_A 158 MRHYLMQKLKNNRLKKENKPVIPLPQILGLTASPGVGGATKQAKAEEHILKLCANLDAFTIKTVKENLDQLKN--QIQEP 235 (699)
T ss_dssp HHHHHHHHHHHHHHHC----CCCCCEEEEECSCCCCCSCCSHHHHHHHHHHHHHHHTCSCCCCCCTTHHHHHH--HSCCC
T ss_pred HHHHHHhhhcccccccccccCCCCCEEEEecccccccccccHHHHHHHHHHHHhhcCCCEEEeecCchHHHhh--hcCCC
Confidence 12122111 445799999999975431 2223333333 222111 122222 22222
Q ss_pred eeEEEEcCCC-----------------------------HHHHHHHHHh-------------------------------
Q 010367 217 QCAEVWCPMT-----------------------------KEFFSEYLKK------------------------------- 236 (512)
Q Consensus 217 ~~~~~~~~~~-----------------------------~~~~~~~l~~------------------------------- 236 (512)
.....++... ...+..++..
T Consensus 236 ~~~~~~~~~~~~~~~~~~l~~l~~~i~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 315 (699)
T 4gl2_A 236 CKKFAIADATREDPFKEKLLEIMTRIQTYCQMSPMSDFGTQPYEQWAIQMEKKAAKEGNRKERVCAEHLRKYNEALQIND 315 (699)
T ss_dssp EEEEEEEC-----CHHHHHHHHHHHHHHHHTCCCCSCSSSHHHHHHHHHHHHHHHHHTCTTTHHHHHHHHHHHHHHHHHH
T ss_pred ceEEEEcccccCChHHHHHHHHHHHHHHHhccCcchhccchHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH
Confidence 2222221110 0000000000
Q ss_pred -----------------hchHH-----------------------------H--HHHhhc---CcchHHHHHHHHHH-hh
Q 010367 237 -----------------ENSKK-----------------------------K--QALYVM---NPNKFRACEFLIRF-HE 264 (512)
Q Consensus 237 -----------------~~~~~-----------------------------~--~~~~~~---~~~k~~~l~~ll~~-~~ 264 (512)
..... . ..+... ...|+..+..++.. ..
T Consensus 316 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~~L~~~~~ 395 (699)
T 4gl2_A 316 TIRMIDAYTHLETFYNEEKDKKFAVIEDDLKKPLKLDETDRFLMTLFFENNKMLKRLAENPEYENEKLTKLRNTIMEQYT 395 (699)
T ss_dssp HSCHHHHHHHHHHHHHHHHHHHC------------CCHHHHHHHHHHHHHHHHHHHHHTCCC----CSSCSHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhhccccccccccccccchhHHHHHHHHHHHHHHHHHHhhcCCCCCHHHHHHHHHHHHHHh
Confidence 00000 0 000000 12344444444433 22
Q ss_pred hcC-CCeEEEEecCHHHHHHHHHHhC-----------CCceeCC--------CCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 265 QQR-GDKIIVFADNLFALTEYAMKLR-----------KPMIYGA--------TSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 265 ~~~-g~k~iVf~~~~~~~~~l~~~L~-----------~~~i~g~--------~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..+ +.++||||+++..++.+++.|. +..+||+ +++.+|.+++++|+++ +++|||+|+++
T Consensus 396 ~~~~~~~~IVF~~s~~~~~~l~~~L~~~~~l~~~g~~~~~lhg~~~~~~~~~~~~~eR~~~~~~F~~g-~~~VLVaT~~~ 474 (699)
T 4gl2_A 396 RTEESARGIIFTKTRQSAYALSQWITENEKFAEVGVKAHHLIGAGHSSEFKPMTQNEQKEVISKFRTG-KINLLIATTVA 474 (699)
T ss_dssp HSSSCCCEEEECSCHHHHHHHHHHHHSSCSCC-----CEECCCSCCCTTCCCCCHHHHHHHHHHHCC----CCSEEECSC
T ss_pred cCCCCCcEEEEECcHHHHHHHHHHHHhCccccccCcceEEEECCCCccCCCCCCHHHHHHHHHHHhcC-CCcEEEEcccc
Confidence 134 7899999999999999999873 3368999 9999999999999997 99999999999
Q ss_pred cccccCccccEEEEecCCCCCHHHHHHHhhcccccC
Q 010367 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
++|||+|++++||+++.++ |+..|+||+||++|.|
T Consensus 475 ~~GIDip~v~~VI~~d~p~-s~~~~~Qr~GRArr~g 509 (699)
T 4gl2_A 475 EEGLDIKECNIVIRYGLVT-NEIAMVQARGRARADE 509 (699)
T ss_dssp CTTSCCCSCCCCEEESCCC-CHHHHHHHHTTSCSSS
T ss_pred ccCCccccCCEEEEeCCCC-CHHHHHHHcCCCCCCC
Confidence 9999999999999999887 9999999999976644
No 23
>1fuu_A Yeast initiation factor 4A; IF4A, helicase, DEAD-box protein, translation; 2.50A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 2vso_A* 2vsx_A*
Probab=100.00 E-value=3.7e-38 Score=323.39 Aligned_cols=293 Identities=17% Similarity=0.158 Sum_probs=116.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||+||+++|+.||.+++.++......
T Consensus 42 ~~~~~~Q~~~i~~i~~~~---~~lv~~~TGsGKT~~~~~~~~~~l~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 118 (394)
T 1fuu_A 42 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 118 (394)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEECCCSSHHHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHhhccCCCCCEEEEcCCHHHHHHHHHHHHHHhccCCe
Confidence 489999999999998875 89999999999999987766542 358999999999999999999998765556
Q ss_pred cEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----HHHHHHhc
Q 010367 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLT 169 (512)
Q Consensus 98 ~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----~~~~l~~~ 169 (512)
.+..+.|+.... ....++|+|+||+.+.....+ ..+....+++||+||||++.+.. +..++..+
T Consensus 119 ~~~~~~g~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~vIiDEah~~~~~~~~~~~~~~~~~~ 190 (394)
T 1fuu_A 119 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 190 (394)
T ss_dssp CEEEECSSCCHHHHHHHHHHCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCCchHHHHhhcCCCCEEEECHHHHHHHHHh--------CCcchhhCcEEEEEChHHhhCCCcHHHHHHHHHhC
Confidence 788888765421 112578999999988643211 11223578999999999986543 34444444
Q ss_pred c-cceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 170 K-SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 170 ~-~~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
. ..++++|||||...... .+..++ .|.......... .......+. ....
T Consensus 191 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~~~------------------~~~~~~~~~---------~~~~ 241 (394)
T 1fuu_A 191 PPTTQVVLLSATMPNDVLE--VTTKFMRNPVRILVKKDEL------------------TLEGIKQFY---------VNVE 241 (394)
T ss_dssp CTTCEEEEECSSCCHHHHH--HHHHHCCSCEEEEECC-------------------------------------------
T ss_pred CCCceEEEEEEecCHHHHH--HHHHhcCCCeEEEecCccc------------------cCCCceEEE---------EEcC
Confidence 3 45789999999742111 111122 122111110000 000000000 0000
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
....+...+..+++... +.++||||+++..++.+++.|. +..+||+++..+|.++++.|+++ +.+|||+|+
T Consensus 242 ~~~~~~~~l~~~~~~~~---~~~~lVf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~~-~~~vlv~T~ 317 (394)
T 1fuu_A 242 EEEYKYECLTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTD 317 (394)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred chhhHHHHHHHHHhcCC---CCcEEEEECCHHHHHHHHHHHHHcCCeEEEeeCCCCHHHHHHHHHHHHCC-CCcEEEECC
Confidence 01113445555554433 6799999999999999999984 56799999999999999999997 899999999
Q ss_pred CCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 323 VGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++++|+|+|++++||+++.++ |+..|+||+||++|.|+
T Consensus 318 ~~~~Gldi~~~~~Vi~~~~p~-s~~~~~Qr~GR~~R~g~ 355 (394)
T 1fuu_A 318 LLARGIDVQQVSLVINYDLPA-NKENYIHRIGRGGRFGR 355 (394)
T ss_dssp ---------------------------------------
T ss_pred hhhcCCCcccCCEEEEeCCCC-CHHHHHHHcCcccCCCC
Confidence 999999999999999998876 99999999999999884
No 24
>2v1x_A ATP-dependent DNA helicase Q1; DNA strand annealing, mismatch repair, nucleotide-binding, DNA-binding, polymorphism, nuclear protein, ATPase; HET: ADP; 2.00A {Homo sapiens} PDB: 2wwy_A*
Probab=100.00 E-value=1.8e-35 Score=317.45 Aligned_cols=291 Identities=16% Similarity=0.177 Sum_probs=211.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
.++||+|.++++.++.+. ++++.+|||+|||++++.++....+.+|||+|+++|+.||.+.+..+ ++ .+..++
T Consensus 43 ~~~rp~Q~~~i~~il~g~---d~lv~~pTGsGKTl~~~lpal~~~g~~lVisP~~~L~~q~~~~l~~~-gi---~~~~l~ 115 (591)
T 2v1x_A 43 EKFRPLQLETINVTMAGK---EVFLVMPTGGGKSLCYQLPALCSDGFTLVICPLISLMEDQLMVLKQL-GI---SATMLN 115 (591)
T ss_dssp CSCCTTHHHHHHHHHTTC---CEEEECCTTSCTTHHHHHHHHTSSSEEEEECSCHHHHHHHHHHHHHH-TC---CEEECC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEEECCCChHHHHHHHHHHHcCCcEEEEeCHHHHHHHHHHHHHhc-CC---cEEEEe
Confidence 479999999999999865 89999999999999999999888889999999999999999999997 44 466677
Q ss_pred CCcccc-----------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------HHH---
Q 010367 104 SDSKER-----------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR--- 163 (512)
Q Consensus 104 ~~~~~~-----------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~~~--- 163 (512)
++.... ..+..+|+|+||++|..... -...+...+....++++||||||++... .+.
T Consensus 116 ~~~~~~~~~~~~~~l~~~~~~~~Ilv~Tpe~L~~~~~---~~~~l~~~~~~~~i~~iViDEAH~is~~g~dfr~~~~~l~ 192 (591)
T 2v1x_A 116 ASSSKEHVKWVHAEMVNKNSELKLIYVTPEKIAKSKM---FMSRLEKAYEARRFTRIAVDEVHCCSQWGHDFRPDYKALG 192 (591)
T ss_dssp SSCCHHHHHHHHHHHHCTTCCCCEEEECHHHHHSCHH---HHHHHHHHHHTTCEEEEEEETGGGGSTTCTTCCGGGGGGG
T ss_pred CCCCHHHHHHHHHHhhcccCCCCEEEEChhHhhccHH---HHHHHHhhhhccCCcEEEEECcccccccccccHHHHHHHH
Confidence 664321 24578999999998864200 0011111222358899999999998642 222
Q ss_pred HHHHhcccceEEEEcccCCCCcchHhhhHhhhC---CceeeecHHHHHhCCCcccceeEEEE-cCCCHHHHHHHHHhhch
Q 010367 164 KVISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVW-CPMTKEFFSEYLKKENS 239 (512)
Q Consensus 164 ~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l~g---p~~~~~~~~~l~~~~~l~~~~~~~~~-~~~~~~~~~~~l~~~~~ 239 (512)
.+...++...+++|||||.... ..++...++ +..+. .++..+.....+. .+..
T Consensus 193 ~l~~~~~~~~ii~lSAT~~~~v--~~~i~~~l~~~~~~~~~--------~~~~r~nl~~~v~~~~~~------------- 249 (591)
T 2v1x_A 193 ILKRQFPNASLIGLTATATNHV--LTDAQKILCIEKCFTFT--------ASFNRPNLYYEVRQKPSN------------- 249 (591)
T ss_dssp HHHHHCTTSEEEEEESSCCHHH--HHHHHHHTTCCSCEEEE--------CCCCCTTEEEEEEECCSS-------------
T ss_pred HHHHhCCCCcEEEEecCCCHHH--HHHHHHHhCCCCcEEEe--------cCCCCcccEEEEEeCCCc-------------
Confidence 2334455678999999997432 122222222 22211 1122221111111 1111
Q ss_pred HHHHHHhhcCcchHHHHHHHHHHhh-hcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCC
Q 010367 240 KKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSR 313 (512)
Q Consensus 240 ~~~~~~~~~~~~k~~~l~~ll~~~~-~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~ 313 (512)
+...+..|++.+. ...+.++||||+++..++.++..| .+..+||++++.+|.++++.|+.+
T Consensus 250 ------------~~~~~~~l~~~l~~~~~~~~~IVf~~sr~~~e~la~~L~~~g~~~~~~h~~l~~~~R~~~~~~F~~g- 316 (591)
T 2v1x_A 250 ------------TEDFIEDIVKLINGRYKGQSGIIYCFSQKDSEQVTVSLQNLGIHAGAYHANLEPEDKTTVHRKWSAN- 316 (591)
T ss_dssp ------------HHHHHHHHHHHHTTTTTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-
T ss_pred ------------HHHHHHHHHHHHHHhccCCCeEEEeCcHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-
Confidence 1122333333332 125789999999999999999999 345799999999999999999997
Q ss_pred CccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 314 DLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 314 ~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+++|||+|.++++|||+|++++||+++.|. |...|+|++||+||.|.
T Consensus 317 ~~~VlVAT~a~~~GID~p~V~~VI~~~~p~-s~~~y~Qr~GRaGR~G~ 363 (591)
T 2v1x_A 317 EIQVVVATVAFGMGIDKPDVRFVIHHSMSK-SMENYYQESGRAGRDDM 363 (591)
T ss_dssp SSSEEEECTTSCTTCCCSCEEEEEESSCCS-SHHHHHHHHTTSCTTSS
T ss_pred CCeEEEEechhhcCCCcccccEEEEeCCCC-CHHHHHHHhccCCcCCC
Confidence 999999999999999999999999998876 99999999999999884
No 25
>3fht_A ATP-dependent RNA helicase DDX19B; DBP5, DEAD-box helicase, RNA dependent ATPase, mRNA export, nucleocytoplasmic transport, NUP214, CAN; HET: ANP; 2.20A {Homo sapiens} PDB: 3ews_A* 3g0h_A* 3fhc_B
Probab=100.00 E-value=4.4e-35 Score=302.33 Aligned_cols=297 Identities=17% Similarity=0.174 Sum_probs=208.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCC-CC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~-~~ 96 (512)
..|+|+|.++++.++.+. .+++++++|||+|||++++.++... ..++||++|+++|+.||.+.+.++... +.
T Consensus 46 ~~~~~~Q~~~i~~~~~~~-~~~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~~~~ 124 (412)
T 3fht_A 46 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 124 (412)
T ss_dssp CSCCHHHHHHHHHHHSSS-CCCEEEECCTTSCHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHhcCC-CCeEEEECCCCchHHHHHHHHHHHHhhhcCCCCCEEEECCCHHHHHHHHHHHHHHHhhccc
Confidence 479999999999998761 2489999999999999987766532 237999999999999999999998653 34
Q ss_pred CcEEEEcCCccc--cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-h----HHHHHHHhc
Q 010367 97 DQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-H----MFRKVISLT 169 (512)
Q Consensus 97 ~~v~~~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-~----~~~~~l~~~ 169 (512)
..+....++... ......+|+|+|++.+.....+. ..+....+++||+||||++.. . ....+...+
T Consensus 125 ~~~~~~~~~~~~~~~~~~~~~ivv~T~~~l~~~~~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~~~~~~ 197 (412)
T 3fht_A 125 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 197 (412)
T ss_dssp CCEEEECTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CSSCGGGCCEEEEETHHHHHSTTTTHHHHHHHHHTS
T ss_pred ceEEEeecCcchhhhhcCCCCEEEECchHHHHHHHhc-------CCcChhhCcEEEEeCHHHHhhcCCcHHHHHHHHhhC
Confidence 566666665332 12345789999999886532110 111125689999999998764 2 333344444
Q ss_pred c-cceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 170 K-SHCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 170 ~-~~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
. ..++++|||||...... .+..+++ |........ ...........+.++..
T Consensus 198 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~--------------------- 250 (412)
T 3fht_A 198 PRNCQMLLFSATFEDSVWK--FAQKVVPDPNVIKLKRE----EETLDTIKQYYVLCSSR--------------------- 250 (412)
T ss_dssp CTTCEEEEEESCCCHHHHH--HHHHHSSSCEEECCCGG----GSSCTTEEEEEEECSSH---------------------
T ss_pred CCCceEEEEEeecCHHHHH--HHHHhcCCCeEEeeccc----cccccCceEEEEEcCCh---------------------
Confidence 3 34789999999643221 1222222 222211110 01111122222222211
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
..|...+..++... .+.++||||+++..++.++..| ++..+||++++.+|.++++.|+++ +.+|||+|+
T Consensus 251 --~~~~~~l~~~~~~~---~~~~~lvf~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~ 324 (412)
T 3fht_A 251 --DEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 324 (412)
T ss_dssp --HHHHHHHHHHHHHH---SSSEEEEECSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHTT-SCSEEEECG
T ss_pred --HHHHHHHHHHHhhc---CCCCEEEEeCCHHHHHHHHHHHHhCCCeEEEecCCCCHHHHHHHHHHHHCC-CCcEEEEcC
Confidence 11234444555443 3679999999999999999998 456799999999999999999997 899999999
Q ss_pred CCcccccCccccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010367 323 VGDNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~-----~s~~~~~Q~~GR~~R~g~ 361 (512)
++++|+|+|++++||+++.++ .+...|+||+||+||.|+
T Consensus 325 ~~~~Gidip~~~~Vi~~~~p~~~~~~~s~~~~~Qr~GR~gR~g~ 368 (412)
T 3fht_A 325 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 368 (412)
T ss_dssp GGTSSCCCTTEEEEEESSCCBCSSSSBCHHHHHHHHTTSSCTTC
T ss_pred ccccCCCccCCCEEEEECCCCCCCCCcchheeecccCcccCCCC
Confidence 999999999999999998774 367899999999999884
No 26
>2ykg_A Probable ATP-dependent RNA helicase DDX58; hydrolase, innate immunity; 2.50A {Homo sapiens} PDB: 3tmi_A*
Probab=100.00 E-value=1.4e-35 Score=327.10 Aligned_cols=337 Identities=17% Similarity=0.197 Sum_probs=192.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--------CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
..+|||||.+++++++.+. ++++++|||+|||++++.++... ++++|||+|+++|+.||.++|.+++..
T Consensus 11 ~~~lr~~Q~~~i~~~l~g~---~~iv~~~TGsGKTl~~~~~i~~~l~~~~~~~~~~~lvl~Pt~~L~~Q~~~~~~~~~~~ 87 (696)
T 2ykg_A 11 PFKPRNYQLELALPAMKGK---NTIICAPTGCGKTFVSLLICEHHLKKFPQGQKGKVVFFANQIPVYEQNKSVFSKYFER 87 (696)
T ss_dssp --CCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHHSCTTCCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCccHHHHHHHHHHHcCC---CEEEEcCCCchHHHHHHHHHHHHHHhCccCCCCeEEEEECCHHHHHHHHHHHHHHhcc
Confidence 3689999999999988764 89999999999999998887532 168999999999999999999999754
Q ss_pred CCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHH-hcCCccEEEEcCCCCCCch-HHHHHHH
Q 010367 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEI-RNREWGLLLMDEVHVVPAH-MFRKVIS 167 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l-~~~~~~lvIiDEaH~~~~~-~~~~~l~ 167 (512)
....+..++|+.... .....+|+|+||++|.....+ ..+ ....+++||+||||++.+. .+..++.
T Consensus 88 ~~~~v~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~L~~~l~~--------~~~~~l~~~~~vViDEaH~~~~~~~~~~i~~ 159 (696)
T 2ykg_A 88 HGYRVTGISGATAENVPVEQIVENNDIIILTPQILVNNLKK--------GTIPSLSIFTLMIFDECHNTSKQHPYNMIMF 159 (696)
T ss_dssp TTCCEEEECSSSCSSSCHHHHHHTCSEEEECHHHHHHHHHT--------TSSCCGGGCSEEEEETGGGCSTTCHHHHHHH
T ss_pred CCceEEEEeCCccccccHHHhccCCCEEEECHHHHHHHHhc--------CcccccccccEEEEeCCCcccCcccHHHHHH
Confidence 456788888875421 124589999999998654211 111 2356899999999998754 3433332
Q ss_pred h-----c-----ccceEEEEcccCCCCcch-----HhhhHhhh---CCceeee---cHHHHHhCCCcccceeEEEEcC--
Q 010367 168 L-----T-----KSHCKLGLTATLVREDER-----ITDLNFLI---GPKLYEA---NWLDLVKGGFIANVQCAEVWCP-- 224 (512)
Q Consensus 168 ~-----~-----~~~~~l~LTATp~~~~~~-----~~~l~~l~---gp~~~~~---~~~~l~~~~~l~~~~~~~~~~~-- 224 (512)
. + ...++|+|||||...+.. ...+..++ ....... ...++.. ++..+......++
T Consensus 160 ~~l~~~~~~~~~~~~~il~LTATp~~~~~~~~~~~~~~i~~~~~~l~~~~~~~~~~~~~~l~~--~~~~p~~~~~~~~~~ 237 (696)
T 2ykg_A 160 NYLDQKLGGSSGPLPQVIGLTASVGVGDAKTTDEALDYICKLCASLDASVIATVKHNLEELEQ--VVYKPQKFFRKVESR 237 (696)
T ss_dssp HHHHHHHTTCCSCCCEEEEEESCCCCSSCCSHHHHHHHHHHHHHHTTCCEEECCCTTHHHHHH--HSCCCEEEEEECCCC
T ss_pred HHHHHhhcccCCCCCeEEEEeCccccCccccHHHHHHHHHHHHHhcCCceEeecccchHHHHh--hcCCCceeEEecCcc
Confidence 1 1 346899999999854322 11222221 1111100 0111111 0000000000000
Q ss_pred -------------------------------------CCHHHHHHHHHh-------------------------------
Q 010367 225 -------------------------------------MTKEFFSEYLKK------------------------------- 236 (512)
Q Consensus 225 -------------------------------------~~~~~~~~~l~~------------------------------- 236 (512)
.....+..++..
T Consensus 238 ~~~~fs~~~~~l~~~i~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~l~ 317 (696)
T 2ykg_A 238 ISDKFKYIIAQLMRDTESLAKRICKDLENLSQIQNREFGTQKYEQWIVTVQKACMVFQMPDKDEESRICKALFLYTSHLR 317 (696)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHSTTGGGSSSCCSCCSSSHHHHHHHHHHHHTSCC------CCHHHHHHHHHHHHHHHH
T ss_pred cCChHHHHHHHHHHHHHHHHHHHHHHHHHhhccccccccchhHHHHHHHHHHHHHHhhcccchhhhHHHHHHHHHHHHHH
Confidence 000000000000
Q ss_pred ----------h----------------------chHHHHHHh------------h----cCcchHHHHHHHHHHhh-hcC
Q 010367 237 ----------E----------------------NSKKKQALY------------V----MNPNKFRACEFLIRFHE-QQR 267 (512)
Q Consensus 237 ----------~----------------------~~~~~~~~~------------~----~~~~k~~~l~~ll~~~~-~~~ 267 (512)
. ......... . ....|+..+..++.... ..+
T Consensus 318 ~~~~~~~i~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~k~~~L~~ll~~~~~~~~ 397 (696)
T 2ykg_A 318 KYNDALIISEHARMKDALDYLKDFFSNVRAAGFDEIEQDLTQRFEEKLQELESVSRDPSNENPKLEDLCFILQEEYHLNP 397 (696)
T ss_dssp HHHHHHHHHHHSCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHTTHHHHHHHHHCGGGCCHHHHHHHHHHHHHHTTCT
T ss_pred HHhHHHhccchhhHHHHHHHHHHHHHHHhhcccchHHHHHHHHHHHHHHHHHHHhcCCCCCCHHHHHHHHHHHHHhccCC
Confidence 0 000000000 0 14457777777776541 135
Q ss_pred CCeEEEEecCHHHHHHHHHHhC-------C--Cce--------eCCCCHHHHHHHHHHhhC-CCCccEEEEeCCCccccc
Q 010367 268 GDKIIVFADNLFALTEYAMKLR-------K--PMI--------YGATSHVERTKILQAFKC-SRDLNTIFLSKVGDNSID 329 (512)
Q Consensus 268 g~k~iVf~~~~~~~~~l~~~L~-------~--~~i--------~g~~~~~eR~~il~~F~~-~~~~~vlv~t~~~~~GlD 329 (512)
+.++||||+++..++.+++.|. . ..+ ||++++.+|.+++++|+. + +++|||+|+++++|||
T Consensus 398 ~~~~IIF~~~~~~~~~l~~~L~~~~~~~~~~~~~l~G~~~~~~h~~~~~~eR~~v~~~F~~~g-~~~vLVaT~v~~~GiD 476 (696)
T 2ykg_A 398 ETITILFVKTRALVDALKNWIEGNPKLSFLKPGILTGRGKTNQNTGMTLPAQKCILDAFKASG-DHNILIATSVADEGID 476 (696)
T ss_dssp TCCEEEECSCHHHHHHHHHHHHHCTTCCSCCEEC------------------------------CCSCSEEEESSCCC--
T ss_pred CCcEEEEeCcHHHHHHHHHHHHhCCCccccceeEEEccCCCccccCCCHHHHHHHHHHHHhcC-CccEEEEechhhcCCc
Confidence 7899999999999999999982 2 235 569999999999999998 7 8999999999999999
Q ss_pred CccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhh
Q 010367 330 IPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 330 lp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (512)
+|++++||+++.++ |+..|+||+|| ||.. .+.+|.+++.++.++
T Consensus 477 ip~v~~VI~~d~p~-s~~~~~Qr~GR-GR~~--------------~g~~~~l~~~~~~~~ 520 (696)
T 2ykg_A 477 IAQCNLVILYEYVG-NVIKMIQTRGR-GRAR--------------GSKCFLLTSNAGVIE 520 (696)
T ss_dssp -CCCSEEEEESCC---CCCC----------C--------------CCEEEEEESCHHHHH
T ss_pred CccCCEEEEeCCCC-CHHHHHHhhcc-CcCC--------------CceEEEEecCCCHHH
Confidence 99999999999887 99999999999 9974 245677888777655
No 27
>3sqw_A ATP-dependent RNA helicase MSS116, mitochondrial; RECA fold, RNA dependent ATPase, RNA helicase; HET: ANP; 1.91A {Saccharomyces cerevisiae S288C}
Probab=100.00 E-value=1.8e-35 Score=319.03 Aligned_cols=304 Identities=16% Similarity=0.144 Sum_probs=206.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEEcChhhHHHHHHHHHHhh-
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWS- 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~- 92 (512)
..|+|+|.++++.++... .++.++.+|||+|||++++.++... ..++|||+|+++|+.||.+++.+++
T Consensus 42 ~~~~~~Q~~~i~~il~~~-~~dvlv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lvl~Ptr~La~Q~~~~~~~~~~ 120 (579)
T 3sqw_A 42 PGLTPVQQKTIKPILSSE-DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 120 (579)
T ss_dssp SSCCHHHHHHHHHHHCSS-SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHccC-CCeEEEEcCCCcHHHHHHHHHHHHHHHhccccccCCCeEEEEcchHHHHHHHHHHHHHHHh
Confidence 369999999999998531 2489999999999999987776432 1379999999999999999999975
Q ss_pred ---CCCCCcEEEEcCCcccc-----c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH-
Q 010367 93 ---TIQDDQICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF- 162 (512)
Q Consensus 93 ---~~~~~~v~~~~~~~~~~-----~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~- 162 (512)
++....+..+.++.... + ...++|+|+||+.|..... .. .......+++||+||||++....|
T Consensus 121 ~~~~~~~~~~~~~~gg~~~~~~~~~l~~~~~~IlV~Tp~~l~~~l~------~~-~~~~~~~~~~lViDEah~l~~~gf~ 193 (579)
T 3sqw_A 121 MNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE------KY-SNKFFRFVDYKVLDEADRLLEIGFR 193 (579)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH------HH-HHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred hcccccceEEEEEECCccHHHHHHHHhcCCCCEEEECHHHHHHHHH------hc-cccccccCCEEEEEChHHhhcCCCH
Confidence 44555666666654311 1 2358899999999865421 11 112236789999999999986533
Q ss_pred ---HHHHHhcc--------cceEEEEcccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCcccceeEEEEcCCCHHHH
Q 010367 163 ---RKVISLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (512)
Q Consensus 163 ---~~~l~~~~--------~~~~l~LTATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 230 (512)
..++..+. ...+++||||+...... ....+++. ..................+....+.++.....
T Consensus 194 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~- 270 (579)
T 3sqw_A 194 DDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANS- 270 (579)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHH-
T ss_pred HHHHHHHHHhhhhhcccccCceEEEEeccCChHHHH--HHHHHcCCCceEEEeecCccccccccccceEEEEecchhhh-
Confidence 33333332 34689999999753221 11222221 11111100000000111111111222211110
Q ss_pred HHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhh-hcCCCeEEEEecCHHHHHHHHHHh------C--CCceeCCCCHHH
Q 010367 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKL------R--KPMIYGATSHVE 301 (512)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~-~~~g~k~iVf~~~~~~~~~l~~~L------~--~~~i~g~~~~~e 301 (512)
+...+..+..... ...+.++||||+++..++.++..| + +..+||++++.+
T Consensus 271 ---------------------~~~~~~~l~~~~~~~~~~~~~iVF~~t~~~~~~l~~~L~~~~~~~~~v~~~hg~~~~~~ 329 (579)
T 3sqw_A 271 ---------------------IFAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 329 (579)
T ss_dssp ---------------------HHHHHHHHHHHHHHTTTCCEEEEECSSHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ---------------------HHHHHHHHHHHHhhcCCCCcEEEECCcHHHHHHHHHHHHHhhcCCCcEEEecCCCCHHH
Confidence 1122222322221 145789999999999999999888 2 235899999999
Q ss_pred HHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 302 R~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|.++++.|+.+ +++|||+|+++++|||+|++++||+++.|. ++..|+||+||++|.|+
T Consensus 330 R~~~~~~F~~g-~~~vLVaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~ 387 (579)
T 3sqw_A 330 RTSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGK 387 (579)
T ss_dssp HHHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTC
T ss_pred HHHHHHHhhcC-CCeEEEEcchhhcCCCcccCCEEEEcCCCC-CHHHhhhhccccccCCC
Confidence 99999999997 999999999999999999999999998877 99999999999999984
No 28
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=100.00 E-value=1.9e-34 Score=298.45 Aligned_cols=291 Identities=18% Similarity=0.150 Sum_probs=208.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.++|+|+|.++++.++.+. +.++++|||+|||++++.++.. .+.++|||+|+++|+.||.+++.+|+. ....+
T Consensus 19 ~~~~~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~-~~~~v 94 (414)
T 3oiy_A 19 GKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLAD-EKVKI 94 (414)
T ss_dssp SSCCCHHHHHHHHHHTTTC---CEECCSCSSSSHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHHHCC-SSCCE
T ss_pred CCCCCHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHhcCCCEEEEEECCHHHHHHHHHHHHHHcc-CCceE
Confidence 3578999999999988764 8999999999999988777655 357899999999999999999999866 55678
Q ss_pred EEEcCCccc--------cc-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-----------
Q 010367 100 CRFTSDSKE--------RF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA----------- 159 (512)
Q Consensus 100 ~~~~~~~~~--------~~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~----------- 159 (512)
..++|+... .+ .+.++|+|+|++.+... +..+....+++||+||||++..
T Consensus 95 ~~~~g~~~~~~~~~~~~~l~~~~~~Iiv~Tp~~l~~~----------l~~~~~~~~~~iViDEaH~~~~~~~~~d~~l~~ 164 (414)
T 3oiy_A 95 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 164 (414)
T ss_dssp EECCTTSCHHHHHHHHHHHHHTCCSEEEEEHHHHHHC----------HHHHTTCCCSEEEESCHHHHHHCHHHHHHHHHH
T ss_pred EEEECCCChhhHHHHHHHhhcCCCCEEEECHHHHHHH----------HHHhccccccEEEEeChHhhhhccchhhhHHhh
Confidence 888887543 11 24589999999998654 2335456899999999997642
Q ss_pred ----hH-HHHHHHhc------------ccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEE
Q 010367 160 ----HM-FRKVISLT------------KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222 (512)
Q Consensus 160 ----~~-~~~~l~~~------------~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~ 222 (512)
+. +..++..+ ...+++++||||............+++..... ............
T Consensus 165 ~~~~~~~~~~i~~~~~~~~~~~~l~~~~~~~~i~~SAT~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~i~~~~ 235 (414)
T 3oiy_A 165 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGR---------LVSVARNITHVR 235 (414)
T ss_dssp TTCCHHHHHHHHHHHHHTCCCCCCTTCCCCEEEESSCCSSCCSSTTHHHHHHHSCCSSC---------CCCCCCSEEEEE
T ss_pred cCCcHHHHHHHHHhcccchhhhhcccCCCceEEEEecCCCcchhHHHHHHHhhccCcCc---------cccccccchhee
Confidence 22 45555554 44578999999654332211122222211100 000011111111
Q ss_pred cCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CC-ceeCC
Q 010367 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KP-MIYGA 296 (512)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~-~i~g~ 296 (512)
.. ..+...+..++... +.++||||+++..++.++..|. +. .+||.
T Consensus 236 ~~-------------------------~~~~~~l~~~l~~~----~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~h~~ 286 (414)
T 3oiy_A 236 IS-------------------------SRSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSEF 286 (414)
T ss_dssp ES-------------------------SCCHHHHHHHHHHH----CSSEEEEESSHHHHHHHHHHHHHTTCCEEESSSCH
T ss_pred ec-------------------------cCHHHHHHHHHHHc----CCCEEEEECCHHHHHHHHHHHHHcCCceehhhcCc
Confidence 11 12334445555442 5789999999999999999983 33 56774
Q ss_pred CCHHHHHHHHHHhhCCCCccEEEE----eCCCcccccCcc-ccEEEEecCC--CCCHHHHHHHhhcccccCCCccccccC
Q 010367 297 TSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSH--AGSRRQEAQRLGRILRAKGKLEDRMAG 369 (512)
Q Consensus 297 ~~~~eR~~il~~F~~~~~~~vlv~----t~~~~~GlDlp~-~~~vI~~~~~--~~s~~~~~Q~~GR~~R~g~~~~~~~~~ 369 (512)
+|. ++.|+++ +++|||+ |+++++|+|+|+ +++||+++.| . |+..|+||+||+||.|++.
T Consensus 287 ----~r~--~~~f~~g-~~~vLvat~s~T~~~~~GiDip~~v~~VI~~~~p~~~-~~~~y~qr~GR~gR~g~~~------ 352 (414)
T 3oiy_A 287 ----EKN--FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPSGP-DVYTYIQASGRSSRILNGV------ 352 (414)
T ss_dssp ----HHH--HHHHHTT-SCSEEEEECCTTCCCCCCCCCTTTCCEEEEESCCTTT-CHHHHHHHHGGGCCEETTE------
T ss_pred ----chH--HHHHhCC-CCeEEEEecCcCchhhccCccccccCEEEEECCCCCC-CHHHHHHHhCccccCCCCC------
Confidence 444 9999998 9999999 999999999999 9999999888 5 9999999999999998421
Q ss_pred CCCceeEEEEEEE
Q 010367 370 GKEEYNAFFYSLV 382 (512)
Q Consensus 370 ~~~~~~~~~y~lv 382 (512)
.+.+.++.++
T Consensus 353 ---~~~g~~i~~~ 362 (414)
T 3oiy_A 353 ---LVKGVSVIFE 362 (414)
T ss_dssp ---ECCEEEEEEC
T ss_pred ---CcceEEEEEE
Confidence 0346667776
No 29
>1oyw_A RECQ helicase, ATP-dependent DNA helicase; winged helix, helix-turn-helix, ATP binding, Zn(2+) binding, hydrolase; 1.80A {Escherichia coli} SCOP: a.4.5.43 c.37.1.19 c.37.1.19 PDB: 1oyy_A*
Probab=100.00 E-value=2.8e-35 Score=312.71 Aligned_cols=283 Identities=17% Similarity=0.192 Sum_probs=211.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFT 103 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~ 103 (512)
..+||+|.++++.++.+. ++++.+|||+|||++++.++....+.+|||+|+++|+.||.+.+..+ ++ .+..++
T Consensus 24 ~~~r~~Q~~~i~~il~g~---d~lv~apTGsGKTl~~~lp~l~~~g~~lvi~P~~aL~~q~~~~l~~~-gi---~~~~l~ 96 (523)
T 1oyw_A 24 QQFRPGQEEIIDTVLSGR---DCLVVMPTGGGKSLCYQIPALLLNGLTVVVSPLISLMKDQVDQLQAN-GV---AAACLN 96 (523)
T ss_dssp SSCCTTHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHSSSEEEEECSCHHHHHHHHHHHHHT-TC---CEEEEC
T ss_pred CCCCHHHHHHHHHHHcCC---CEEEECCCCcHHHHHHHHHHHHhCCCEEEECChHHHHHHHHHHHHHc-CC---cEEEEe
Confidence 478999999999998765 89999999999999999888888889999999999999999999986 33 466666
Q ss_pred CCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch------HHH---HH
Q 010367 104 SDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH------MFR---KV 165 (512)
Q Consensus 104 ~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~------~~~---~~ 165 (512)
++.... ..+..+|+++||+++... .+.+.+....+++||+||||++... .+. .+
T Consensus 97 ~~~~~~~~~~~~~~~~~~~~~ilv~Tpe~l~~~--------~~~~~l~~~~~~~vViDEaH~i~~~g~~fr~~~~~l~~l 168 (523)
T 1oyw_A 97 STQTREQQLEVMTGCRTGQIRLLYIAPERLMLD--------NFLEHLAHWNPVLLAVDEAHCISQWGHDFRPEYAALGQL 168 (523)
T ss_dssp TTSCHHHHHHHHHHHHHTCCSEEEECHHHHTST--------THHHHHTTSCEEEEEESSGGGGCTTSSCCCHHHHGGGGH
T ss_pred CCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCh--------HHHHHHhhCCCCEEEEeCccccCcCCCccHHHHHHHHHH
Confidence 654311 135689999999999643 2234455578999999999998742 232 23
Q ss_pred HHhcccceEEEEcccCCCCcchHhhhHhhhC---CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHH
Q 010367 166 ISLTKSHCKLGLTATLVREDERITDLNFLIG---PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (512)
Q Consensus 166 l~~~~~~~~l~LTATp~~~~~~~~~l~~l~g---p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (512)
...++...+++|||||..... .++...++ |..+.. ++-.+ .......+
T Consensus 169 ~~~~~~~~~i~lSAT~~~~~~--~~i~~~l~~~~~~~~~~--------~~~r~-~l~~~v~~------------------ 219 (523)
T 1oyw_A 169 RQRFPTLPFMALTATADDTTR--QDIVRLLGLNDPLIQIS--------SFDRP-NIRYMLME------------------ 219 (523)
T ss_dssp HHHCTTSCEEEEESCCCHHHH--HHHHHHHTCCSCEEEEC--------CCCCT-TEEEEEEE------------------
T ss_pred HHhCCCCCEEEEeCCCCHHHH--HHHHHHhCCCCCeEEeC--------CCCCC-ceEEEEEe------------------
Confidence 344455678999999975321 22222222 222211 11111 11111111
Q ss_pred HHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccE
Q 010367 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNT 317 (512)
Q Consensus 243 ~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~v 317 (512)
...+...+..++.. .++.++||||+++..++.+++.| .+..+||++++.+|.++++.|+++ +++|
T Consensus 220 ------~~~~~~~l~~~l~~---~~~~~~IVf~~sr~~~e~l~~~L~~~g~~~~~~h~~l~~~~R~~~~~~f~~g-~~~v 289 (523)
T 1oyw_A 220 ------KFKPLDQLMRYVQE---QRGKSGIIYCNSRAKVEDTAARLQSKGISAAAYHAGLENNVRADVQEKFQRD-DLQI 289 (523)
T ss_dssp ------CSSHHHHHHHHHHH---TTTCCEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSE
T ss_pred ------CCCHHHHHHHHHHh---cCCCcEEEEeCCHHHHHHHHHHHHHCCCCEEEecCCCCHHHHHHHHHHHHcC-CCeE
Confidence 11222333333433 35789999999999999999999 245799999999999999999997 8999
Q ss_pred EEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 318 IFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 318 lv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
||+|+++++|||+|++++||+++.|+ |...|+|++||+||.|.
T Consensus 290 lVaT~a~~~GiD~p~v~~VI~~~~p~-s~~~y~Qr~GRaGR~g~ 332 (523)
T 1oyw_A 290 VVATVAFGMGINKPNVRFVVHFDIPR-NIESYYQETGRAGRDGL 332 (523)
T ss_dssp EEECTTSCTTTCCTTCCEEEESSCCS-SHHHHHHHHTTSCTTSS
T ss_pred EEEechhhCCCCccCccEEEEECCCC-CHHHHHHHhccccCCCC
Confidence 99999999999999999999998876 99999999999999884
No 30
>3i5x_A ATP-dependent RNA helicase MSS116; protein-RNA complex, RNA helicase, DEAD-BOX, ATP-binding, HE hydrolase, mitochondrion; HET: ANP; 1.90A {Saccharomyces cerevisiae} PDB: 3i5y_A* 3i61_A* 3i62_A* 3sqx_A* 4db2_A 4db4_A
Probab=100.00 E-value=2.4e-35 Score=317.28 Aligned_cols=304 Identities=16% Similarity=0.147 Sum_probs=205.3
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEEcChhhHHHHHHHHHHhh-
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWS- 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~- 92 (512)
.+|+|+|.++++.++... .++.++++|||+|||++++.++... ..++|||+|+++|+.||.+++.+++
T Consensus 93 ~~~~~~Q~~~i~~~l~~~-~~~~lv~apTGsGKTl~~~lpil~~l~~~~~~~~~~~~~lil~Ptr~La~Q~~~~~~~~~~ 171 (563)
T 3i5x_A 93 PGLTPVQQKTIKPILSSE-DHDVIARAKTGTGKTFAFLIPIFQHLINTKFDSQYMVKAVIVAPTRDLALQIEAEVKKIHD 171 (563)
T ss_dssp SSCCHHHHHHHHHHHSSS-SEEEEEECCTTSCHHHHHHHHHHHHHHHTTTSSTTSCCEEEECSSHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhcCC-CCeEEEECCCCCCccHHHHHHHHHHHHhccccccCCeeEEEEcCcHHHHHHHHHHHHHHHh
Confidence 369999999999998531 2489999999999999987776432 1379999999999999999999874
Q ss_pred ---CCCCCcEEEEcCCcccc------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHH
Q 010367 93 ---TIQDDQICRFTSDSKER------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFR 163 (512)
Q Consensus 93 ---~~~~~~v~~~~~~~~~~------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~ 163 (512)
++....+..+.++.... ....++|+|+||+.|..... .. .......+++||+||||++....|.
T Consensus 172 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~------~~-~~~~~~~~~~lViDEah~l~~~~f~ 244 (563)
T 3i5x_A 172 MNYGLKKYACVSLVGGTDFRAAMNKMNKLRPNIVIATPGRLIDVLE------KY-SNKFFRFVDYKVLDEADRLLEIGFR 244 (563)
T ss_dssp HCGGGTTSCEEEECTTSCHHHHHHHHHHHCCSEEEECHHHHHHHHH------HH-HHHHCTTCCEEEEETHHHHTSTTTH
T ss_pred hccccCceeEEEEECCcCHHHHHHHHhcCCCCEEEECcHHHHHHHH------hc-cccccccceEEEEeCHHHHhccchH
Confidence 33444566666654311 12467899999999865421 11 1112367899999999999865433
Q ss_pred ----HHHHhcc--------cceEEEEcccCCCCcchHhhhHhhhCC-ceeeecHHHHHhCCCcccceeEEEEcCCCHHHH
Q 010367 164 ----KVISLTK--------SHCKLGLTATLVREDERITDLNFLIGP-KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFF 230 (512)
Q Consensus 164 ----~~l~~~~--------~~~~l~LTATp~~~~~~~~~l~~l~gp-~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~ 230 (512)
.++..+. ..++++||||+...... ....+++. ..................+....+.++......
T Consensus 245 ~~~~~i~~~l~~~~~~~~~~~~~l~~SAT~~~~v~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 322 (563)
T 3i5x_A 245 DDLETISGILNEKNSKSADNIKTLLFSATLDDKVQK--LANNIMNKKECLFLDTVDKNEPEAHERIDQSVVISEKFANSI 322 (563)
T ss_dssp HHHHHHHHHHHHHCSSCTTCCEEEEEESSCCTHHHH--HTTTTCCSSEEEEEESSCSSSCSSCTTEEEEEEEESSTTHHH
T ss_pred HHHHHHHHhhhhccccCccCceEEEEEccCCHHHHH--HHHHhcCCCceEEEeccCCCCccccccCceEEEECchhHhhH
Confidence 3333321 33689999999753221 11122221 111111000000001111111112222111100
Q ss_pred HHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhh-hcCCCeEEEEecCHHHHHHHHHHh------C--CCceeCCCCHHH
Q 010367 231 SEYLKKENSKKKQALYVMNPNKFRACEFLIRFHE-QQRGDKIIVFADNLFALTEYAMKL------R--KPMIYGATSHVE 301 (512)
Q Consensus 231 ~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~-~~~g~k~iVf~~~~~~~~~l~~~L------~--~~~i~g~~~~~e 301 (512)
...+..+..... ...+.++||||+++..++.++..| + +..+||++++.+
T Consensus 323 ----------------------~~~~~~l~~~~~~~~~~~~~iVF~~s~~~~~~l~~~L~~~~~~~~~v~~~h~~~~~~~ 380 (563)
T 3i5x_A 323 ----------------------FAAVEHIKKQIKERDSNYKAIIFAPTVKFTSFLCSILKNEFKKDLPILEFHGKITQNK 380 (563)
T ss_dssp ----------------------HHHHHHHHHHHHHTTTCCEEEEECSCHHHHHHHHHHHHHHHTTTSCEEEESTTSCHHH
T ss_pred ----------------------HHHHHHHHHHHhhcCCCCcEEEEcCcHHHHHHHHHHHHHhccCCceEEEecCCCCHHH
Confidence 112222222221 145789999999999999999888 2 335899999999
Q ss_pred HHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 302 RTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 302 R~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|.++++.|+.+ +++|||+|+++++|||+|++++||+++.|. |+..|+||+||++|.|.
T Consensus 381 R~~~~~~f~~g-~~~vLvaT~~~~~GiDip~v~~VI~~~~p~-s~~~y~Qr~GRagR~g~ 438 (563)
T 3i5x_A 381 RTSLVKRFKKD-ESGILVCTDVGARGMDFPNVHEVLQIGVPS-ELANYIHRIGRTARSGK 438 (563)
T ss_dssp HHHHHHHHHHC-SSEEEEECGGGTSSCCCTTCCEEEEESCCS-STTHHHHHHTTSSCTTC
T ss_pred HHHHHHHHhcC-CCCEEEEcchhhcCCCcccCCEEEEECCCC-chhhhhhhcCccccCCC
Confidence 99999999997 999999999999999999999999998877 99999999999999884
No 31
>2xgj_A ATP-dependent RNA helicase DOB1; hydrolase-RNA complex, hydrolase, tramp, exosome, DEAD, nucleotide-binding; HET: ADP; 2.90A {Saccharomyces cerevisiae}
Probab=100.00 E-value=4.2e-34 Score=322.81 Aligned_cols=331 Identities=15% Similarity=0.077 Sum_probs=223.1
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
...++|+|+|.+++..+..+. +.++++|||+|||+++..++.. .+.++||++|+++|+.||.++|..+++
T Consensus 82 ~~~f~L~~~Q~eai~~l~~g~---~vLV~apTGSGKTlva~lai~~~l~~g~rvL~l~PtkaLa~Q~~~~l~~~~~---- 154 (1010)
T 2xgj_A 82 TYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG---- 154 (1010)
T ss_dssp CCSSCCCHHHHHHHHHHHHTC---EEEEECCTTSCHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHHS----
T ss_pred hCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHhccCCeEEEECChHHHHHHHHHHHHHHhC----
Confidence 345789999999999988765 8999999999999998776654 367999999999999999999999876
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcc-cc
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SH 172 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~-~~ 172 (512)
.++.++|+... ....+|+|+|+++|.....+ ......++++||+||||++.+. .+..++..++ ..
T Consensus 155 ~vglltGd~~~--~~~~~IvV~Tpe~L~~~L~~--------~~~~l~~l~lVViDEaH~l~d~~rg~~~e~il~~l~~~~ 224 (1010)
T 2xgj_A 155 DVGLMTGDITI--NPDAGCLVMTTEILRSMLYR--------GSEVMREVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 224 (1010)
T ss_dssp CEEEECSSCEE--CTTCSEEEEEHHHHHHHHHH--------TCTTGGGEEEEEEETGGGGGCTTTHHHHHHHHHHSCTTC
T ss_pred CEEEEeCCCcc--CCCCCEEEEcHHHHHHHHHc--------CcchhhcCCEEEEechhhhcccchhHHHHHHHHhcCCCC
Confidence 68889988653 45678999999988643111 0111257899999999999754 4555555554 35
Q ss_pred eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcC-------------CCHHHHHHHHHhhch
Q 010367 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-------------MTKEFFSEYLKKENS 239 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~-------------~~~~~~~~~l~~~~~ 239 (512)
++|+||||+.+.......+....+........ .+-..+......+.+ .....+...+.....
T Consensus 225 ~il~LSATi~n~~e~a~~l~~~~~~~~~vi~~-----~~rp~pl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~ 299 (1010)
T 2xgj_A 225 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYT-----NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 299 (1010)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTSCEEEEEE-----CCCSSCEEEEEEETTSSCCEEEECTTCCBCHHHHHHHHHTCC-
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec-----CCCcccceEEEEecCCcceeeeeccccccchHHHHHHHHHHhh
Confidence 78999999875433222233233321111000 011112221111111 111112211100000
Q ss_pred HHHHH-------HhhcCcch--------HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---------------
Q 010367 240 KKKQA-------LYVMNPNK--------FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------- 289 (512)
Q Consensus 240 ~~~~~-------~~~~~~~k--------~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~--------------- 289 (512)
..... -......| ...+..++..+....+.++||||+++..++.++..|.
T Consensus 300 ~~~~~~~~~~~~g~~~~~~k~~~~~~~~~~~l~~l~~~l~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 379 (1010)
T 2xgj_A 300 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 379 (1010)
T ss_dssp -----------------------------CHHHHHHHHHHHHTCCSEEEEESSHHHHHHHHHTTTTSCCCCHHHHHHHHH
T ss_pred hhcccccccccccccccccccccccccchHHHHHHHHHHHhcCCCCEEEEECCHHHHHHHHHHHHhCCCCChHHHHHHHH
Confidence 00000 00000000 2234445544432345689999999999999988873
Q ss_pred -----------------------------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE--
Q 010367 290 -----------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ-- 338 (512)
Q Consensus 290 -----------------------------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~-- 338 (512)
+.++||++++.+|..+++.|+++ .++|||+|+++++|||+|++++||.
T Consensus 380 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gI~~~Hggl~~~eR~~ve~~F~~G-~ikVLVAT~~la~GIDiP~~~vVI~~~ 458 (1010)
T 2xgj_A 380 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFTSV 458 (1010)
T ss_dssp HHHHHHTTSCGGGTTCHHHHHHHHHHHHTEEEESTTSCHHHHHHHHHHHHTT-CCSEEEEEGGGGGSTTCCBSEEEESCS
T ss_pred HHHHHHHhcchhhhcchhHHHHHHHHhCCeeEECCCCCHHHHHHHHHHHhcC-CCcEEEEehHhhccCCCCCceEEEeCC
Confidence 23589999999999999999997 9999999999999999999999998
Q ss_pred --ecC----CCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 339 --ISS----HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 339 --~~~----~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
++. ++ |+..|.|++||+||.|. +..+.++.+++.+.
T Consensus 459 ~kfd~~~~rp~-s~~~y~Qr~GRAGR~G~-----------d~~G~vi~l~~~~~ 500 (1010)
T 2xgj_A 459 RKWDGQQFRWV-SGGEYIQMSGRAGRRGL-----------DDRGIVIMMIDEKM 500 (1010)
T ss_dssp EEECSSCEEEC-CHHHHHHHHTTBCCTTT-----------CSSEEEEEEECSCC
T ss_pred cccCCcCCccC-CHHHHhHhhhhcccCCC-----------CCceEEEEEECCCC
Confidence 765 55 99999999999999994 33477777777653
No 32
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=100.00 E-value=3.9e-34 Score=327.60 Aligned_cols=316 Identities=17% Similarity=0.186 Sum_probs=221.7
Q ss_pred CCCCCCcHHHHHHHHHHHhC---CCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
...++++|+|.++++.++.. +++.++++++|||+|||++++.++.. .+++++|+||+++|+.||.++|.+++..
T Consensus 599 ~f~~~~t~~Q~~ai~~il~~~~~g~p~d~ll~~~TGsGKT~val~aa~~~~~~g~~vlvlvPt~~La~Q~~~~~~~~~~~ 678 (1151)
T 2eyq_A 599 SFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQVAVLVPTTLLAQQHYDNFRDRFAN 678 (1151)
T ss_dssp TCCSCCCHHHHHHHHHHHHHHHSSSCCEEEEECCCCTTTHHHHHHHHHHHHTTTCEEEEECSSHHHHHHHHHHHHHHSTT
T ss_pred hCCCCCCHHHHHHHHHHHHHHhcCCcCcEEEECCCCCCHHHHHHHHHHHHHHhCCeEEEEechHHHHHHHHHHHHHHhhc
Confidence 34678999999999998763 43458999999999999998766633 3578999999999999999999988755
Q ss_pred CCCcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHH
Q 010367 95 QDDQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKV 165 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~ 165 (512)
.+..+..+++..... ..+..+|+|+|++.+.... ...++++||+||||++.......+
T Consensus 679 ~~i~v~~l~~~~~~~~~~~~~~~l~~g~~dIvV~T~~ll~~~~-------------~~~~l~lvIiDEaH~~g~~~~~~l 745 (1151)
T 2eyq_A 679 WPVRIEMISRFRSAKEQTQILAEVAEGKIDILIGTHKLLQSDV-------------KFKDLGLLIVDEEHRFGVRHKERI 745 (1151)
T ss_dssp TTCCEEEESTTSCHHHHHHHHHHHHTTCCSEEEECTHHHHSCC-------------CCSSEEEEEEESGGGSCHHHHHHH
T ss_pred CCCeEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhCCc-------------cccccceEEEechHhcChHHHHHH
Confidence 456788887643211 1356899999999875431 126889999999999876655444
Q ss_pred HHhcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 166 ISLTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 166 l~~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
........+|+|||||.+...... +..+..+.... ..-...........+...
T Consensus 746 ~~l~~~~~vl~lSATp~p~~l~~~-~~~~~~~~~i~--------~~~~~r~~i~~~~~~~~~------------------ 798 (1151)
T 2eyq_A 746 KAMRANVDILTLTATPIPRTLNMA-MSGMRDLSIIA--------TPPARRLAVKTFVREYDS------------------ 798 (1151)
T ss_dssp HHHHTTSEEEEEESSCCCHHHHHH-HTTTSEEEECC--------CCCCBCBCEEEEEEECCH------------------
T ss_pred HHhcCCCCEEEEcCCCChhhHHHH-HhcCCCceEEe--------cCCCCccccEEEEecCCH------------------
Confidence 333344679999999975432110 00000000000 000001111111111111
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-------CCCceeCCCCHHHHHHHHHHhhCCCCccEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-------RKPMIYGATSHVERTKILQAFKCSRDLNTI 318 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-------~~~~i~g~~~~~eR~~il~~F~~~~~~~vl 318 (512)
..+...++..+ .++.+++|||+++..++.+++.| ++..+||++++.+|.+++++|+++ +++||
T Consensus 799 -------~~i~~~il~~l--~~g~qvlvf~~~v~~~~~l~~~L~~~~p~~~v~~lhg~~~~~eR~~il~~F~~g-~~~VL 868 (1151)
T 2eyq_A 799 -------MVVREAILREI--LRGGQVYYLYNDVENIQKAAERLAELVPEARIAIGHGQMRERELERVMNDFHHQ-RFNVL 868 (1151)
T ss_dssp -------HHHHHHHHHHH--TTTCEEEEECCCSSCHHHHHHHHHHHCTTSCEEECCSSCCHHHHHHHHHHHHTT-SCCEE
T ss_pred -------HHHHHHHHHHH--hcCCeEEEEECCHHHHHHHHHHHHHhCCCCeEEEEeCCCCHHHHHHHHHHHHcC-CCcEE
Confidence 12233344443 35789999999999999888887 244699999999999999999997 99999
Q ss_pred EEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHH
Q 010367 319 FLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQF 398 (512)
Q Consensus 319 v~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~ 398 (512)
|||+++++|+|+|++++||+++++..+..++.|++||+||.|+ .+++|.++..+......+.+|.+.
T Consensus 869 VaT~v~e~GiDip~v~~VIi~~~~~~~l~~l~Qr~GRvgR~g~-------------~g~~~ll~~~~~~l~~~~~~rl~~ 935 (1151)
T 2eyq_A 869 VCTTIIETGIDIPTANTIIIERADHFGLAQLHQLRGRVGRSHH-------------QAYAWLLTPHPKAMTTDAQKRLEA 935 (1151)
T ss_dssp EESSTTGGGSCCTTEEEEEETTTTSSCHHHHHHHHTTCCBTTB-------------CEEEEEEECCGGGSCHHHHHHHHH
T ss_pred EECCcceeeecccCCcEEEEeCCCCCCHHHHHHHHhccCcCCC-------------ceEEEEEECCccccCHHHHHHHHH
Confidence 9999999999999999999987744499999999999999884 355666666554333444444443
Q ss_pred H
Q 010367 399 L 399 (512)
Q Consensus 399 l 399 (512)
+
T Consensus 936 i 936 (1151)
T 2eyq_A 936 I 936 (1151)
T ss_dssp H
T ss_pred H
Confidence 3
No 33
>3l9o_A ATP-dependent RNA helicase DOB1; REC-A fold, winged-helix-turn-helix, antiparallel-coiled-COI domain, ATP-binding, helicase, hydrolase; 3.39A {Saccharomyces cerevisiae}
Probab=100.00 E-value=2.6e-33 Score=318.99 Aligned_cols=332 Identities=17% Similarity=0.104 Sum_probs=221.1
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
...++|+|+|.++++.+..+. +.++++|||+|||+++..++... ++++||++|+++|+.||.++|..+++
T Consensus 180 ~~~f~ltp~Q~~AI~~i~~g~---dvLV~ApTGSGKTlva~l~i~~~l~~g~rvlvl~PtraLa~Q~~~~l~~~~~---- 252 (1108)
T 3l9o_A 180 TYPFTLDPFQDTAISCIDRGE---SVLVSAHTSAGKTVVAEYAIAQSLKNKQRVIYTSPIKALSNQKYRELLAEFG---- 252 (1108)
T ss_dssp CCSSCCCHHHHHHHHHHTTTC---CEEEECCSSSHHHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHHHHTS----
T ss_pred hCCCCCCHHHHHHHHHHHcCC---CEEEECCCCCChHHHHHHHHHHHHhcCCeEEEEcCcHHHHHHHHHHHHHHhC----
Confidence 345789999999999976654 89999999999999988877654 67899999999999999999999876
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----HHHHHHhcc-cc
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISLTK-SH 172 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----~~~~l~~~~-~~ 172 (512)
.++.++|+.. ....++|+|+|++.|.....+.. ..+ .++++|||||||++.... +..++..++ ..
T Consensus 253 ~VglltGd~~--~~~~~~IlV~Tpe~L~~~L~~~~------~~l--~~l~lVVIDEaH~l~d~~rg~~~e~ii~~l~~~~ 322 (1108)
T 3l9o_A 253 DVGLMTGDIT--INPDAGCLVMTTEILRSMLYRGS------EVM--REVAWVIFDEVHYMRDKERGVVWEETIILLPDKV 322 (1108)
T ss_dssp SEEEECSSCB--CCCSCSEEEEEHHHHHHHHHHCS------SHH--HHEEEEEEETGGGTTSHHHHHHHHHHHHHSCTTS
T ss_pred CccEEeCccc--cCCCCCEEEeChHHHHHHHHcCc------ccc--ccCCEEEEhhhhhccccchHHHHHHHHHhcCCCc
Confidence 6888888865 35668999999998875422110 012 467999999999998764 444555554 34
Q ss_pred eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcC-------------CCHHHHHHHHHhhch
Q 010367 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCP-------------MTKEFFSEYLKKENS 239 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~-------------~~~~~~~~~l~~~~~ 239 (512)
++|+||||+.+.......+....+........ ...-.+.....+... .....+...+.....
T Consensus 323 qvl~lSATipn~~e~a~~l~~~~~~~~~vi~~-----~~rp~pl~~~~~~~~~~~~~~~vd~~~~~~~~~~~~~~~~l~~ 397 (1108)
T 3l9o_A 323 RYVFLSATIPNAMEFAEWICKIHSQPCHIVYT-----NFRPTPLQHYLFPAHGDGIYLVVDEKSTFREENFQKAMASISN 397 (1108)
T ss_dssp EEEEEECSCSSCHHHHHHHHHHTCSCEEEEEE-----CCCSSCEEEEEEETTSSCCEEEEETTTEECHHHHHHHHTTC--
T ss_pred eEEEEcCCCCCHHHHHHHHHhhcCCCeEEEec-----CCCcccceEEEeecCCcceeeeeccccchhhhhHHHHHHHHHh
Confidence 78999999775533222233333221111000 001111111111100 011112211100000
Q ss_pred ------------HHHHHHhhcCcch---HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC---------------
Q 010367 240 ------------KKKQALYVMNPNK---FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------- 289 (512)
Q Consensus 240 ------------~~~~~~~~~~~~k---~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~--------------- 289 (512)
............+ ...+..++..+....+.++||||+++..++.++..|.
T Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~li~~l~~~~~~~vIVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~ 477 (1108)
T 3l9o_A 398 QIGDDPNSTDSRGKKGQTYKGGSAKGDAKGDIYKIVKMIWKKKYNPVIVFSFSKRDCEELALKMSKLDFNSDDEKEALTK 477 (1108)
T ss_dssp ---------------------------CHHHHHHHHHHHHHTTCCCEEEEESCHHHHHHHHHHTCSHHHHCC----CHHH
T ss_pred hhcccccccccccccccccccccccccchhHHHHHHHHHHhcCCCCEEEEeCcHHHHHHHHHHHHhccCCCHHHHHHHHH
Confidence 0000000000000 2344455555443556799999999999999998873
Q ss_pred -----------------------------CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEec
Q 010367 290 -----------------------------KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (512)
Q Consensus 290 -----------------------------~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~ 340 (512)
+.++||++++.+|..+++.|+.| .++|||+|+++++|||+|++++||.++
T Consensus 478 ~~~~~~~~l~~~d~~l~~~~~l~~~l~~gV~~~Hg~l~~~~R~~v~~~F~~G-~ikVLVAT~vla~GIDiP~v~~VI~~~ 556 (1108)
T 3l9o_A 478 IFNNAIALLPETDRELPQIKHILPLLRRGIGIHHSGLLPILKEVIEILFQEG-FLKVLFATETFSIGLNMPAKTVVFTSV 556 (1108)
T ss_dssp HGGGSCTHHHHHTTCCHHHHHHTHHHHHTEEEECSCSCHHHHHHHHHHHHHT-CCCEEEEESCCCSCCCC--CEEEESCS
T ss_pred HHHHHHhhcchhhhhhhhHHHHHHhhhcCeeeecCCCCHHHHHHHHHHHhCC-CCeEEEECcHHhcCCCCCCceEEEecC
Confidence 35689999999999999999998 999999999999999999999999653
Q ss_pred CC-------CCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 341 SH-------AGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 341 ~~-------~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
.+ +.|+..|+||+||+||.| .+..+.+|.+.+...
T Consensus 557 ~~~d~~~~r~iS~~eyiQr~GRAGR~G-----------~d~~G~~ill~~~~~ 598 (1108)
T 3l9o_A 557 RKWDGQQFRWVSGGEYIQMSGRAGRRG-----------LDDRGIVIMMIDEKM 598 (1108)
T ss_dssp EEESSSCEEECCHHHHHHHHHHSCCSS-----------SCSSEEEEEEECCCC
T ss_pred cccCccccccCCHHHHHHhhcccCCCC-----------CCCceEEEEEecCCc
Confidence 32 227888999999999999 334577777777664
No 34
>3fmp_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 3.19A {Homo sapiens}
Probab=100.00 E-value=3.7e-35 Score=309.60 Aligned_cols=297 Identities=17% Similarity=0.187 Sum_probs=110.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-C-----CCEEEEEcChhhHHHHHHHHHHhhCC-CC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-K-----KSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~~-~~ 96 (512)
..|+|+|.++++.++.+. .++.++++|||+|||++++.++... . .++|||+|+++|+.||.+.+.++... +.
T Consensus 113 ~~p~~~Q~~ai~~il~~~-~~~~l~~a~TGsGKT~~~~l~il~~l~~~~~~~~~lil~Pt~~La~Q~~~~~~~~~~~~~~ 191 (479)
T 3fmp_B 113 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (479)
T ss_dssp CSCCHHHHHHHHHHTSBS-CCEEEEECCSSSSHHHHHHHHHHTTCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSTT
T ss_pred CCCCHHHHHHHHHHHcCC-CCcEEEEcCCCCchhHHHHHHHHHHHhhcCCCCcEEEEeChHHHHHHHHHHHHHHHhhCCC
Confidence 468999999999988752 2489999999999999988777643 1 27999999999999999999887643 33
Q ss_pred CcEEEEcCCcc--ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-hHH----HHHHHhc
Q 010367 97 DQICRFTSDSK--ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMF----RKVISLT 169 (512)
Q Consensus 97 ~~v~~~~~~~~--~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-~~~----~~~l~~~ 169 (512)
..+....++.. .......+|+|+|++.|.....+. ..+...++++||+||||++.. ..+ ..+...+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~-------~~~~~~~~~~iViDEah~~~~~~~~~~~~~~i~~~~ 264 (479)
T 3fmp_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (479)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTS-------CCCCGGGCCEEEECCHHHHHTSTTHHHHHHHHHTTS
T ss_pred ceEEEEeCCccccccccCCCCEEEECchHHHHHHHhc-------CCcCcccCCEEEEECHHHHhhcCCcHHHHHHHHhhC
Confidence 45555555432 112345689999999885432110 111225789999999998864 233 3333333
Q ss_pred c-cceEEEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 170 K-SHCKLGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 170 ~-~~~~l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
. ..+++++||||...... ....++ .|.......... .......+. ....
T Consensus 265 ~~~~~~i~~SAT~~~~~~~--~~~~~~~~~~~i~~~~~~~------------------~~~~~~~~~---------~~~~ 315 (479)
T 3fmp_B 265 PRNCQMLLFSATFEDSVWK--FAQKVVPDPNVIKLKREEE------------------TLDTIKQYY---------VLCS 315 (479)
T ss_dssp CTTSEEEEEESCCCHHHHH--HHHHHSSSEEEEEEC--------------------------------------------
T ss_pred CccceEEEEeCCCCHHHHH--HHHHHcCCCeEEecccccc------------------CcCCceEEE---------EEeC
Confidence 3 34789999999742211 111111 111111110000 000000000 0001
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
....+...+..++... .+.++||||+++..++.++..| ++.++||++++.+|.++++.|+++ +++|||+|+
T Consensus 316 ~~~~~~~~l~~~~~~~---~~~~~lvF~~s~~~~~~l~~~L~~~~~~v~~lh~~~~~~~R~~~~~~f~~g-~~~iLv~T~ 391 (479)
T 3fmp_B 316 SRDEKFQALCNLYGAI---TIAQAMIFCHTRKTASWLAAELSKEGHQVALLSGEMMVEQRAAVIERFREG-KEKVLVTTN 391 (479)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred CHHHHHHHHHHHHhhc---cCCceEEEeCcHHHHHHHHHHHHhCCccEEEecCCCCHHHHHHHHHHHHcC-CCcEEEEcc
Confidence 1122444444555433 3568999999999999999998 356799999999999999999997 999999999
Q ss_pred CCcccccCccccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010367 323 VGDNSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 323 ~~~~GlDlp~~~~vI~~~~~~-----~s~~~~~Q~~GR~~R~g~ 361 (512)
++++|+|+|++++||+++.|+ .+...|+||+||+||.|.
T Consensus 392 ~~~~GlDip~v~~VI~~d~p~~~~~~~s~~~~~Qr~GRagR~g~ 435 (479)
T 3fmp_B 392 VCARGIDVEQVSVVINFDLPVDKDGNPDNETYLHRIGRTGRFGK 435 (479)
T ss_dssp --------------------------------------------
T ss_pred ccccCCccccCCEEEEecCCCCCccCCCHHHHHHHhcccccCCC
Confidence 999999999999999998774 256899999999999884
No 35
>3fho_A ATP-dependent RNA helicase DBP5; mRNA export, ATPase, translation termination, binding, hydrolase, membrane, mRNA transport; 2.80A {Schizosaccharomyces pombe}
Probab=100.00 E-value=5.2e-35 Score=310.26 Aligned_cols=295 Identities=17% Similarity=0.167 Sum_probs=185.3
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
+|+|+|.+++..++.++ .+++++++|||+|||++++.++... +.++||++|+++|+.||.++|.+++......
T Consensus 141 ~p~~~Q~~ai~~i~~~~-~~~~ll~apTGsGKT~~~~~~il~~l~~~~~~~~vLvl~P~~~L~~Q~~~~~~~~~~~~~~~ 219 (508)
T 3fho_A 141 XXXKIQEKALPLLLSNP-PRNMIGQSQSGTGKTAAFALTMLSRVDASVPKPQAICLAPSRELARQIMDVVTEMGKYTEVK 219 (508)
T ss_dssp ECCCTTSSSHHHHHCSS-CCCEEEECCSSTTSHHHHHHHHHHHSCTTCCSCCEEEECSCHHHHHHHHHHHHHHSTTSSCC
T ss_pred CcHHHHHHHHHHHHcCC-CCCEEEECCCCccHHHHHHHHHHHHHHhCCCCceEEEEECcHHHHHHHHHHHHHhCCccCee
Confidence 58999999999998871 2489999999999999987776543 2489999999999999999999987544444
Q ss_pred EEEEcCC-ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHhcc-c
Q 010367 99 ICRFTSD-SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTK-S 171 (512)
Q Consensus 99 v~~~~~~-~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~~~-~ 171 (512)
+....++ ........++|+|+|++++.....+ ..+....+++||+||||++... .+..+...+. .
T Consensus 220 ~~~~~~~~~~~~~~~~~~Ivv~T~~~l~~~l~~--------~~~~~~~~~lIIiDEaH~~~~~~~~~~~~~~i~~~~~~~ 291 (508)
T 3fho_A 220 TAFGIKDSVPKGAKIDAQIVIGTPGTVMDLMKR--------RQLDARDIKVFVLDEADNMLDQQGLGDQSMRIKHLLPRN 291 (508)
T ss_dssp EEC----------CCCCSEEEECHHHHHHHHHT--------TCSCCTTCCEEEECCHHHHTTC--CHHHHHHHHHHSCTT
T ss_pred EEEEeCCcccccccCCCCEEEECHHHHHHHHHc--------CCccccCCCEEEEechhhhcccCCcHHHHHHHHHhCCcC
Confidence 4333333 2222234688999999988653211 1122357899999999998762 3444555554 3
Q ss_pred ceEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCc
Q 010367 172 HCKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNP 250 (512)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~ 250 (512)
.++++|||||...... ....+.+ +........... ...+....+.+.. ..
T Consensus 292 ~~~i~lSAT~~~~~~~--~~~~~~~~~~~i~~~~~~~~----~~~~~~~~~~~~~-----------------------~~ 342 (508)
T 3fho_A 292 TQIVLFSATFSERVEK--YAERFAPNANEIRLKTEELS----VEGIKQLYMDCQS-----------------------EE 342 (508)
T ss_dssp CEEEEEESCCSTHHHH--HHHHHSTTCEEECCCCCC--------CCCCEEEEC-------------------------CH
T ss_pred CeEEEEeCCCCHHHHH--HHHHhcCCCeEEEeccccCC----cccceEEEEECCc-----------------------hH
Confidence 4679999999643222 1112222 111111100000 0011111111111 11
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.+...+..++... .+.++||||+++..++.++..| .+..+||+++..+|.++++.|+++ +.+|||+|++++
T Consensus 343 ~k~~~l~~ll~~~---~~~~~LVF~~s~~~a~~l~~~L~~~~~~v~~~hg~~~~~~R~~il~~f~~g-~~~VLVaT~~l~ 418 (508)
T 3fho_A 343 HKYNVLVELYGLL---TIGQSIIFCKKKDTAEEIARRMTADGHTVACLTGNLEGAQRDAIMDSFRVG-TSKVLVTTNVIA 418 (508)
T ss_dssp HHHHHHHHHHC------CCCEEEBCSSTTTTTHHHHHHTTTTCCCCEEC-----CTTGGGTHHHHSS-SCCCCEECC---
T ss_pred HHHHHHHHHHHhc---CCCcEEEEECCHHHHHHHHHHHHhCCCcEEEEeCCCCHHHHHHHHHHHHCC-CCeEEEeCChhh
Confidence 1223444444333 3679999999999999999998 356799999999999999999997 899999999999
Q ss_pred ccccCccccEEEEecCCC-----CCHHHHHHHhhcccccCC
Q 010367 326 NSIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 326 ~GlDlp~~~~vI~~~~~~-----~s~~~~~Q~~GR~~R~g~ 361 (512)
+|+|+|++++||+++.++ .|...|+||+||+||.|+
T Consensus 419 ~GiDip~v~~VI~~~~p~~~~~~~s~~~~~Qr~GRagR~g~ 459 (508)
T 3fho_A 419 RGIDVSQVNLVVNYDMPLDQAGRPDPQTYLHRIGRTGRFGR 459 (508)
T ss_dssp --CCCTTCCEEEC----CC-----CTHHHHHTTSCCC----
T ss_pred cCCCccCCCEEEEECCCCcccCCCCHHHHHHHhhhcCCCCC
Confidence 999999999999987773 489999999999999884
No 36
>2p6r_A Afuhel308 helicase; protein-DNA complex, SF2 helicase, archaeal helicase, DNA repair,, DNA binding protein/DNA complex; 3.00A {Archaeoglobus fulgidus} SCOP: a.4.5.43 a.289.1.2 c.37.1.19 c.37.1.19 PDB: 2p6u_A
Probab=100.00 E-value=1.2e-32 Score=303.42 Aligned_cols=310 Identities=18% Similarity=0.218 Sum_probs=212.9
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
+|+|+|.++++.++.+. +.++++|||+|||+++..++.. .+++++|++|+++|+.||.++++++... ...+..
T Consensus 25 ~l~~~Q~~~i~~i~~~~---~~lv~apTGsGKT~~~~l~il~~~~~~~~~l~i~P~r~La~q~~~~~~~~~~~-g~~v~~ 100 (702)
T 2p6r_A 25 ELFPPQAEAVEKVFSGK---NLLLAMPTAAGKTLLAEMAMVREAIKGGKSLYVVPLRALAGEKYESFKKWEKI-GLRIGI 100 (702)
T ss_dssp CCCCCCHHHHHHHTTCS---CEEEECSSHHHHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHTTTTTT-TCCEEE
T ss_pred CCCHHHHHHHHHHhCCC---cEEEEcCCccHHHHHHHHHHHHHHHhCCcEEEEeCcHHHHHHHHHHHHHHHhc-CCEEEE
Confidence 89999999999966543 9999999999999998766643 2679999999999999999999765432 457888
Q ss_pred EcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhc----cc
Q 010367 102 FTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT----KS 171 (512)
Q Consensus 102 ~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~----~~ 171 (512)
++|+.... ....++|+|+|++++.....+. ...+ .++++||+||+|.+... .+..++..+ +.
T Consensus 101 ~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~l~~~------~~~l--~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~~~ 172 (702)
T 2p6r_A 101 STGDYESRDEHLGDCDIIVTTSEKADSLIRNR------ASWI--KAVSCLVVDEIHLLDSEKRGATLEILVTKMRRMNKA 172 (702)
T ss_dssp ECSSCBCCSSCSTTCSEEEEEHHHHHHHHHTT------CSGG--GGCCEEEETTGGGGGCTTTHHHHHHHHHHHHHHCTT
T ss_pred EeCCCCcchhhccCCCEEEECHHHHHHHHHcC------hhHH--hhcCEEEEeeeeecCCCCcccHHHHHHHHHHhcCcC
Confidence 88875432 2347899999999886532211 0112 46899999999998653 333344333 35
Q ss_pred ceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcc
Q 010367 172 HCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (512)
Q Consensus 172 ~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 251 (512)
.++++||||+.+ ..++..+++...+...+ --.++.......+ . ..+. ... .+ ....-.
T Consensus 173 ~~ii~lSATl~n----~~~~~~~l~~~~~~~~~-------r~~~l~~~~~~~~-~----~~~~-~~~--~~---~~~~~~ 230 (702)
T 2p6r_A 173 LRVIGLSATAPN----VTEIAEWLDADYYVSDW-------RPVPLVEGVLCEG-T----LELF-DGA--FS---TSRRVK 230 (702)
T ss_dssp CEEEEEECCCTT----HHHHHHHTTCEEEECCC-------CSSCEEEEEECSS-E----EEEE-ETT--EE---EEEECC
T ss_pred ceEEEECCCcCC----HHHHHHHhCCCcccCCC-------CCccceEEEeeCC-e----eecc-Ccc--hh---hhhhhh
Confidence 688999999974 22344455544332211 0111111110000 0 0000 000 00 000000
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----------------------------------CCCceeCC
Q 010367 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----------------------------------RKPMIYGA 296 (512)
Q Consensus 252 k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----------------------------------~~~~i~g~ 296 (512)
+...+..+ + ..+.++||||+++..++.++..| ++.++||+
T Consensus 231 ~~~~~~~~---~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~~~v~~~h~~ 305 (702)
T 2p6r_A 231 FEELVEEC---V--AENGGVLVFESTRRGAEKTAVKLSAITAKYVENEGLEKAILEENEGEMSRKLAECVRKGAAFHHAG 305 (702)
T ss_dssp HHHHHHHH---H--HTTCCEEEECSSHHHHHHHHHHHHHHHHTTCCCSSHHHHHHTTCCSHHHHHHHHHHHTTCCEECTT
T ss_pred HHHHHHHH---H--hcCCCEEEEcCCHHHHHHHHHHHHHHHHhhcChHHHHHHHHhhccccccHHHHHHHhcCeEEecCC
Confidence 22222222 2 35779999999999988887765 36679999
Q ss_pred CCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE----ec---CCCCCHHHHHHHhhcccccCCCccccccC
Q 010367 297 TSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS---SHAGSRRQEAQRLGRILRAKGKLEDRMAG 369 (512)
Q Consensus 297 ~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~----~~---~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~ 369 (512)
+++++|..+++.|+++ .++|||+|+++++|+|+|++++||. |+ .+. |...+.||+||+||.|
T Consensus 306 l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~yd~~~~~~-s~~~~~Qr~GRaGR~g--------- 374 (702)
T 2p6r_A 306 LLNGQRRVVEDAFRRG-NIKVVVATPTLAAGVNLPARRVIVRSLYRFDGYSKRI-KVSEYKQMAGRAGRPG--------- 374 (702)
T ss_dssp SCHHHHHHHHHHHHTT-SCCEEEECSTTTSSSCCCBSEEEECCSEEESSSEEEC-CHHHHHHHHTTBSCTT---------
T ss_pred CCHHHHHHHHHHHHCC-CCeEEEECcHHhccCCCCceEEEEcCceeeCCCCCcC-CHHHHHHHhhhcCCCC---------
Confidence 9999999999999998 9999999999999999999999997 44 344 9999999999999998
Q ss_pred CCCceeEEEEEEEeCCc
Q 010367 370 GKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 370 ~~~~~~~~~y~lv~~~t 386 (512)
.+..+..|.+.+...
T Consensus 375 --~~~~G~~~~l~~~~~ 389 (702)
T 2p6r_A 375 --MDERGEAIIIVGKRD 389 (702)
T ss_dssp --TCSCEEEEEECCGGG
T ss_pred --CCCCceEEEEecCcc
Confidence 344577777777655
No 37
>2w00_A HSDR, R.ECOR124I; ATP-binding, DNA-binding, restriction system, helicase, HYDR R.ECOR124I, nucleotide-binding; HET: ATP; 2.6A {Escherichia coli} PDB: 2y3t_A* 2w74_B*
Probab=100.00 E-value=1.4e-32 Score=308.95 Aligned_cols=334 Identities=14% Similarity=0.141 Sum_probs=227.5
Q ss_pred CCCcHHHHHHHHHHHhC-----------CCCcceEEEcCCCCcHHHHHHHHHHhcC-----CCEEEEEcChhhHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGN-----------GRARSGIIVLPCGAGKSLVGVSAACRIK-----KSCLCLATNAVSVDQWAFQ 87 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~-----------~~~~~~il~~~tG~GKTl~~i~~i~~~~-----~~~Lvl~P~~~L~~Qw~~~ 87 (512)
..|||||.+|+++++.. ...++++++++||+|||++++.++..+. .++|||||+++|+.||.++
T Consensus 270 ~~~R~~Q~~AI~~il~~i~~~~~~~~~~~~~~~gli~~~TGSGKT~t~~~l~~ll~~~~~~~rvLvlvpr~eL~~Q~~~~ 349 (1038)
T 2w00_A 270 LVMRPYQIAATERILWKIKSSFTAKNWSKPESGGYIWHTTGSGKTLTSFKAARLATELDFIDKVFFVVDRKDLDYQTMKE 349 (1038)
T ss_dssp EECCHHHHHHHHHHHHHHHHHHHHTCCSSGGGSEEEEECTTSSHHHHHHHHHHHHTTCTTCCEEEEEECGGGCCHHHHHH
T ss_pred ccCCHHHHHHHHHHHHHHHhcccccccccCCCCEEEEecCCCCHHHHHHHHHHHHHhcCCCceEEEEeCcHHHHHHHHHH
Confidence 57999999999998752 0125899999999999999877765442 4899999999999999999
Q ss_pred HHHhhCCCCCcEEEEcCCcc----ccc-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-H
Q 010367 88 FKLWSTIQDDQICRFTSDSK----ERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-M 161 (512)
Q Consensus 88 ~~~~~~~~~~~v~~~~~~~~----~~~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~ 161 (512)
|..|.... + ..+... ..+ ....+|+|+|++.+....+... ....+ ..+.+||+||||+.... .
T Consensus 350 f~~f~~~~---v--~~~~s~~~l~~~L~~~~~~IiVtTiqkl~~~l~~~~----~~~~~--~~~~lvIiDEAHrs~~~~~ 418 (1038)
T 2w00_A 350 YQRFSPDS---V--NGSENTAGLKRNLDKDDNKIIVTTIQKLNNLMKAES----DLPVY--NQQVVFIFDECHRSQFGEA 418 (1038)
T ss_dssp HHTTSTTC---S--SSSCCCHHHHHHHHCSSCCEEEEEHHHHHHHHHHCC----CCGGG--GSCEEEEEESCCTTHHHHH
T ss_pred HHHhcccc---c--ccccCHHHHHHHhcCCCCCEEEEEHHHHHHHHhccc----chhcc--ccccEEEEEccchhcchHH
Confidence 99985321 1 111111 112 2458899999999865311000 00112 36789999999998864 4
Q ss_pred HHHHHHhcccceEEEEcccCCCCcch--HhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhch
Q 010367 162 FRKVISLTKSHCKLGLTATLVREDER--ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENS 239 (512)
Q Consensus 162 ~~~~l~~~~~~~~l~LTATp~~~~~~--~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~ 239 (512)
+..+...++..++|||||||.+.++. ......++|+.++.++..++++.|++.++.+..... .+.+...-......
T Consensus 419 ~~~I~~~~p~a~~lgfTATP~~~~~~~~~~~t~~~FG~~i~~Y~l~~AI~dg~l~p~~v~y~~v--~~~~~~~~~e~d~~ 496 (1038)
T 2w00_A 419 QKNLKKKFKRYYQFGFTGTPIFPENALGSETTASVFGRELHSYVITDAIRDEKVLKFKVDYNDV--RPQFKSLETETDEK 496 (1038)
T ss_dssp HHHHHHHCSSEEEEEEESSCCCSTTCTTSCCHHHHHCSEEEEECHHHHHHHTSSCCEEEEECCC--CGGGHHHHTCCCHH
T ss_pred HHHHHHhCCcccEEEEeCCccccccchhhhHHHHHhCCeeEeecHHHHHhCCCcCCeEEEEEec--cchhhhccccccHH
Confidence 66677778888999999999987642 124567899999999999999999999886543321 11110000000000
Q ss_pred HHHH---HHhhcCcchHH-HHHHHHHHhhhc--------CCCeEEEEecCHHHHHHHHHHhC-----------------C
Q 010367 240 KKKQ---ALYVMNPNKFR-ACEFLIRFHEQQ--------RGDKIIVFADNLFALTEYAMKLR-----------------K 290 (512)
Q Consensus 240 ~~~~---~~~~~~~~k~~-~l~~ll~~~~~~--------~g~k~iVf~~~~~~~~~l~~~L~-----------------~ 290 (512)
.... .....++.+.. ++..++...... .+.++||||+++.++..+++.|. +
T Consensus 497 ~~~~i~~~~~l~~~~ri~~I~~~Il~~~~~~~~~~~~~~~g~kamVf~~S~~~A~~~~~~l~~~~~~~~~~~~~~~~~k~ 576 (1038)
T 2w00_A 497 KLSAAENQQAFLHPMRIQEITQYILNNFRQKTHRTFPGSKGFNAMLAVSSVDAAKAYYATFKRLQEEAANKSATYKPLRI 576 (1038)
T ss_dssp HHHHTCSTTTTTCHHHHHHHHHHHHHHHHHHTTCSSSSCCCCEEEEEESSHHHHHHHHHHHHHHHHHHTTTSSSCCCCCE
T ss_pred HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhhhhhcccCCCCcEEEEECCHHHHHHHHHHHHhhhhhhcccccccccCcE
Confidence 0000 00112344433 345555543211 35689999999999999888771 1
Q ss_pred C-ceeCC----------C----------CH-----------------------------HHHHHHHHHhhCCCCccEEEE
Q 010367 291 P-MIYGA----------T----------SH-----------------------------VERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 291 ~-~i~g~----------~----------~~-----------------------------~eR~~il~~F~~~~~~~vlv~ 320 (512)
. +++|+ + ++ .+|.+++++|+++ ++++||+
T Consensus 577 avv~s~~~~~~~~~~G~~~~e~~~~~~~~~~~r~~l~~~I~dyn~~f~~~~~~~~~~~~~~R~~i~~~Fk~g-~i~ILIv 655 (1038)
T 2w00_A 577 ATIFSFAANEEQNAIGEISDETFDTSAMDSSAKEFLDAAIREYNSHFKTNFSTDSNGFQNYYRDLAQRVKNQ-DIDLLIV 655 (1038)
T ss_dssp EEECCCCC------CCCCCCCCSCGGGSCHHHHHHHHHHHHHHHHHHTCCCCSSHHHHHHHHHHHHHHHHTT-SSSEEEE
T ss_pred EEEEeCCCccccccccccccccccccccchhHHHHHHHHHHHHHHHhcccccccchhhhHHHHHHHHHHHcC-CCeEEEE
Confidence 1 24442 1 21 2488899999997 8999999
Q ss_pred eCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCCC-ccccccCCCCceeEEEEEEEe
Q 010367 321 SKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGK-LEDRMAGGKEEYNAFFYSLVS 383 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~-~~~~~~~~~~~~~~~~y~lv~ 383 (512)
|+++.+|+|+|.++++ .++.|. +...++|++||++|.+++ +. .+.+.+++.
T Consensus 656 vd~lltGfDiP~l~tl-ylDkpl-~~~~liQaIGRtnR~~~~~K~----------~G~IVdf~~ 707 (1038)
T 2w00_A 656 VGMFLTGFDAPTLNTL-FVDKNL-RYHGLMQAFSRTNRIYDATKT----------FGNIVTFRD 707 (1038)
T ss_dssp SSTTSSSCCCTTEEEE-EEESCC-CHHHHHHHHHTTCCCCCTTCC----------SEEEEESSC
T ss_pred cchHHhCcCcccccEE-EEccCC-CccceeehhhccCcCCCCCCC----------cEEEEEccc
Confidence 9999999999999655 456776 889999999999999963 32 356666664
No 38
>4a4z_A Antiviral helicase SKI2; hydrolase, ATPase, mRNA degradation, exosome; HET: ANP; 2.40A {Saccharomyces cerevisiae} PDB: 4a4k_A
Probab=100.00 E-value=1.5e-31 Score=301.95 Aligned_cols=333 Identities=15% Similarity=0.096 Sum_probs=217.1
Q ss_pred CCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 21 KPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 21 ~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
...++|+|+|.+++..++.+. ++++++|||+|||++++.++.. .+.++||++|+++|+.||.++|.++++ ..
T Consensus 35 ~~~f~l~~~Q~~aI~~il~g~---~vlv~apTGsGKTlv~~~~i~~~~~~g~~vlvl~PtraLa~Q~~~~l~~~~~--~~ 109 (997)
T 4a4z_A 35 SWPFELDTFQKEAVYHLEQGD---SVFVAAHTSAGKTVVAEYAIAMAHRNMTKTIYTSPIKALSNQKFRDFKETFD--DV 109 (997)
T ss_dssp CCSSCCCHHHHHHHHHHHTTC---EEEEECCTTSCSHHHHHHHHHHHHHTTCEEEEEESCGGGHHHHHHHHHTTC----C
T ss_pred hCCCCCCHHHHHHHHHHHcCC---CEEEEECCCCcHHHHHHHHHHHHHhcCCeEEEEeCCHHHHHHHHHHHHHHcC--CC
Confidence 445789999999999988765 8999999999999987766653 356799999999999999999999753 45
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhccc-c
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKS-H 172 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~~-~ 172 (512)
.+..++|+... ....+|+|+|++.|.....+ .......+++||+||||++... .+..++..++. .
T Consensus 110 ~v~~l~G~~~~--~~~~~IlV~Tpe~L~~~l~~--------~~~~l~~l~lvViDEaH~l~d~~~g~~~e~ii~~l~~~v 179 (997)
T 4a4z_A 110 NIGLITGDVQI--NPDANCLIMTTEILRSMLYR--------GADLIRDVEFVIFDEVHYVNDQDRGVVWEEVIIMLPQHV 179 (997)
T ss_dssp CEEEECSSCEE--CTTSSEEEEEHHHHHHHHHH--------TCSGGGGEEEEEECCTTCCCTTCTTCCHHHHHHHSCTTC
T ss_pred eEEEEeCCCcc--CCCCCEEEECHHHHHHHHHh--------CchhhcCCCEEEEECcccccccchHHHHHHHHHhcccCC
Confidence 78888887653 45689999999988643110 1111257899999999998753 56777777654 5
Q ss_pred eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEE--------EEcC---CCHHHHHHHHHhhc--h
Q 010367 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAE--------VWCP---MTKEFFSEYLKKEN--S 239 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~--------~~~~---~~~~~~~~~l~~~~--~ 239 (512)
++|+|||||.+.......+....+..++.... .+--.+..... +... +....+........ .
T Consensus 180 ~iIlLSAT~~n~~ef~~~l~~~~~~~~~vi~~-----~~r~~pl~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (997)
T 4a4z_A 180 KFILLSATVPNTYEFANWIGRTKQKNIYVIST-----PKRPVPLEINIWAKKELIPVINQNSEFLEANFRKHKEILNGES 254 (997)
T ss_dssp EEEEEECCCTTHHHHHHHHHHHHTCCEEEEEC-----SSCSSCEEEEEEETTEEEEEECTTCCBCHHHHHHHHHHHC---
T ss_pred CEEEEcCCCCChHHHHHHHhcccCCceEEEec-----CCCCccceEEEecCCcchhcccchhhhhHHHHHHHHHHhhccc
Confidence 78999999975442222222111111111100 00111111110 0000 11111111000000 0
Q ss_pred --------------------------H---------------------------H-HH--HHhhcCcchHHHHHHHHHHh
Q 010367 240 --------------------------K---------------------------K-KQ--ALYVMNPNKFRACEFLIRFH 263 (512)
Q Consensus 240 --------------------------~---------------------------~-~~--~~~~~~~~k~~~l~~ll~~~ 263 (512)
+ . .. ........++ ..++..+
T Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~li~~l 331 (997)
T 4a4z_A 255 AKGAPSKTDNGRGGSTARGGRGGSNTRDGRGGRGNSTRGGANRGGSRGAGAIGSNKRKFFTQDGPSKKTW---PEIVNYL 331 (997)
T ss_dssp --------------------------------------------------------------CCCCTTHH---HHHHHHH
T ss_pred cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccchhHH---HHHHHHH
Confidence 0 0 00 0000122223 3344444
Q ss_pred hhcCCCeEEEEecCHHHHHHHHHHhC--------------------------------------------CCceeCCCCH
Q 010367 264 EQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------------KPMIYGATSH 299 (512)
Q Consensus 264 ~~~~g~k~iVf~~~~~~~~~l~~~L~--------------------------------------------~~~i~g~~~~ 299 (512)
......++||||.++..++.++..|. +..+||++++
T Consensus 332 ~~~~~~~~IVF~~sr~~~e~la~~L~~~~~~~~~e~~~i~~~~~~~~~~l~~~d~~l~~~~~l~~~l~~gi~~~H~gl~~ 411 (997)
T 4a4z_A 332 RKRELLPMVVFVFSKKRCEEYADWLEGINFCNNKEKSQIHMFIEKSITRLKKEDRDLPQILKTRSLLERGIAVHHGGLLP 411 (997)
T ss_dssp HHTTCCSEEEECSCHHHHHHHHHTTTTCCCCCHHHHHHHHHHHHHHHTTSCHHHHTCHHHHHHHHHHTTTEEEECTTSCH
T ss_pred HhCCCCCEEEEECCHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHHHHhcchhhhcchhHHHHHHHhhcCeeeecCCCCH
Confidence 32446799999999999999998883 3568999999
Q ss_pred HHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEec--------CCCCCHHHHHHHhhcccccCCCccccccCCC
Q 010367 300 VERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS--------SHAGSRRQEAQRLGRILRAKGKLEDRMAGGK 371 (512)
Q Consensus 300 ~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~--------~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~ 371 (512)
.+|..+++.|+.+ .++|||+|.++++|||+|+.++|+... .+. |+..|+|++||+||.|.
T Consensus 412 ~~R~~v~~~F~~G-~~kVLvAT~~~a~GIDiP~~~VVi~~~~k~dg~~~~~~-s~~~y~Qr~GRAGR~G~---------- 479 (997)
T 4a4z_A 412 IVKELIEILFSKG-FIKVLFATETFAMGLNLPTRTVIFSSIRKHDGNGLREL-TPGEFTQMAGRAGRRGL---------- 479 (997)
T ss_dssp HHHHHHHHHHHTT-CCSEEEECTHHHHSCCCCCSEEEESCSEEEETTEEEEC-CHHHHHHHHGGGCCTTT----------
T ss_pred HHHHHHHHHHHCC-CCcEEEEchHhhCCCCCCCceEEEeccccccCccCCCC-CHHHHhHHhcccccCCC----------
Confidence 9999999999998 999999999999999999955555211 112 89999999999999983
Q ss_pred CceeEEEEEEEeCCcHhh
Q 010367 372 EEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 372 ~~~~~~~y~lv~~~t~e~ 389 (512)
...+.++.+...+..+.
T Consensus 480 -~~~G~vi~l~~~~~~~~ 496 (997)
T 4a4z_A 480 -DSTGTVIVMAYNSPLSI 496 (997)
T ss_dssp -CSSEEEEEECCSSCCCH
T ss_pred -CcceEEEEecCCCcchH
Confidence 33466666665444443
No 39
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=100.00 E-value=6e-34 Score=312.27 Aligned_cols=289 Identities=16% Similarity=0.158 Sum_probs=200.9
Q ss_pred CCCCcHHHHHHHHHHHhC---CCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 23 HAQPRPYQEKSLSKMFGN---GRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~---~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
.++|+|+|.++++.++.. +...+.++.+|||+|||++++.++... +.+++|++|+++|+.||.++|.+++....
T Consensus 366 pf~lt~~Q~~ai~~I~~~l~~~~~~~~Ll~a~TGSGKTlvall~il~~l~~g~qvlvlaPtr~La~Q~~~~l~~~~~~~g 445 (780)
T 1gm5_A 366 PFKLTNAQKRAHQEIRNDMISEKPMNRLLQGDVGSGKTVVAQLAILDNYEAGFQTAFMVPTSILAIQHYRRTVESFSKFN 445 (780)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCCCCEEECCSSSSHHHHHHHHHHHHHHHTSCEEEECSCHHHHHHHHHHHHHHHTCSS
T ss_pred CCCCCHHHHHHHHHHHhhccccCCCcEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEeCcHHHHHHHHHHHHHHhhhcC
Confidence 458999999999998764 333488999999999999998887654 67999999999999999999999975445
Q ss_pred CcEEEEcCCcccc---------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHH
Q 010367 97 DQICRFTSDSKER---------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVIS 167 (512)
Q Consensus 97 ~~v~~~~~~~~~~---------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~ 167 (512)
..+..++|+.... ..+..+|+|+|++.+... +...++++||+||+|++.......+..
T Consensus 446 i~v~~l~G~~~~~~r~~~~~~l~~g~~~IvVgT~~ll~~~-------------~~~~~l~lVVIDEaHr~g~~qr~~l~~ 512 (780)
T 1gm5_A 446 IHVALLIGATTPSEKEKIKSGLRNGQIDVVIGTHALIQED-------------VHFKNLGLVIIDEQHRFGVKQREALMN 512 (780)
T ss_dssp CCEEECCSSSCHHHHHHHHHHHHSSCCCEEEECTTHHHHC-------------CCCSCCCEEEEESCCCC-----CCCCS
T ss_pred ceEEEEeCCCCHHHHHHHHHHHhcCCCCEEEECHHHHhhh-------------hhccCCceEEecccchhhHHHHHHHHH
Confidence 6788888875432 135689999999877432 223688999999999986543322222
Q ss_pred hcccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhh
Q 010367 168 LTKSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYV 247 (512)
Q Consensus 168 ~~~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~ 247 (512)
......+++|||||...... ..++|..-...- +....+ ..++ .....+
T Consensus 513 ~~~~~~vL~mSATp~p~tl~----~~~~g~~~~s~i--~~~p~~-r~~i--~~~~~~----------------------- 560 (780)
T 1gm5_A 513 KGKMVDTLVMSATPIPRSMA----LAFYGDLDVTVI--DEMPPG-RKEV--QTMLVP----------------------- 560 (780)
T ss_dssp SSSCCCEEEEESSCCCHHHH----HHHTCCSSCEEE--CCCCSS-CCCC--EECCCC-----------------------
T ss_pred hCCCCCEEEEeCCCCHHHHH----HHHhCCcceeee--eccCCC-Ccce--EEEEec-----------------------
Confidence 22346799999999753211 112222110000 000000 0011 111111
Q ss_pred cCcchH-HHHHHHHHHhhhcCCCeEEEEecCHH--------HHHHHHHHhC--------CCceeCCCCHHHHHHHHHHhh
Q 010367 248 MNPNKF-RACEFLIRFHEQQRGDKIIVFADNLF--------ALTEYAMKLR--------KPMIYGATSHVERTKILQAFK 310 (512)
Q Consensus 248 ~~~~k~-~~l~~ll~~~~~~~g~k~iVf~~~~~--------~~~~l~~~L~--------~~~i~g~~~~~eR~~il~~F~ 310 (512)
..+. .++..+.+.. ..+.+++|||+.++ .++.+++.|. +..+||++++.+|.++++.|+
T Consensus 561 --~~~~~~l~~~i~~~l--~~g~qvlVf~~~ie~se~l~~~~a~~l~~~L~~~~~~~~~v~~lHG~m~~~eR~~v~~~F~ 636 (780)
T 1gm5_A 561 --MDRVNEVYEFVRQEV--MRGGQAFIVYPLIEESDKLNVKSAVEMYEYLSKEVFPEFKLGLMHGRLSQEEKDRVMLEFA 636 (780)
T ss_dssp --SSTHHHHHHHHHHHT--TTSCCBCCBCCCC--------CHHHHHHHSGGGSCC---CBCCCCSSSCCSCSHHHHHHHT
T ss_pred --cchHHHHHHHHHHHH--hcCCcEEEEecchhhhhhhhHHHHHHHHHHHHhhhcCCCcEEEEeCCCCHHHHHHHHHHHH
Confidence 1111 2222233333 46789999998654 3555665553 456999999999999999999
Q ss_pred CCCCccEEEEeCCCcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 311 ~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++ +++|||+|+++++|+|+|++++||+++++..+..++.|++||+||.|.
T Consensus 637 ~G-~~~ILVaT~vie~GIDiP~v~~VIi~d~~r~~l~~l~Qr~GRaGR~g~ 686 (780)
T 1gm5_A 637 EG-RYDILVSTTVIEVGIDVPRANVMVIENPERFGLAQLHQLRGRVGRGGQ 686 (780)
T ss_dssp TT-SSSBCCCSSCCCSCSCCTTCCEEEBCSCSSSCTTHHHHHHHTSCCSST
T ss_pred CC-CCeEEEECCCCCccccCCCCCEEEEeCCCCCCHHHHHHHhcccCcCCC
Confidence 97 999999999999999999999999998875578899999999999884
No 40
>2zj8_A DNA helicase, putative SKI2-type helicase; RECA fold, ATP-binding, hydrolase, nucleotide- binding; 2.00A {Pyrococcus furiosus} PDB: 2zj5_A* 2zj2_A 2zja_A*
Probab=100.00 E-value=1.1e-32 Score=304.52 Aligned_cols=312 Identities=15% Similarity=0.187 Sum_probs=214.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.+|+|+|.+++..++..+ ++.++++|||+|||+++..++.. .+++++|++|+++|+.||.++++++... ...+
T Consensus 22 ~~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~~l~i~P~raLa~q~~~~~~~l~~~-g~~v 98 (720)
T 2zj8_A 22 ESFYPPQAEALKSGILEG--KNALISIPTASGKTLIAEIAMVHRILTQGGKAVYIVPLKALAEEKFQEFQDWEKI-GLRV 98 (720)
T ss_dssp CBCCHHHHHHHTTTGGGT--CEEEEECCGGGCHHHHHHHHHHHHHHHHCSEEEEECSSGGGHHHHHHHTGGGGGG-TCCE
T ss_pred CCCCHHHHHHHHHHhcCC--CcEEEEcCCccHHHHHHHHHHHHHHHhCCCEEEEEcCcHHHHHHHHHHHHHHHhc-CCEE
Confidence 389999999999844433 39999999999999998655532 3679999999999999999999766433 3478
Q ss_pred EEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcc-cc
Q 010367 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK-SH 172 (512)
Q Consensus 100 ~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~-~~ 172 (512)
..++|+.... .....+|+|+|++++.....+ .... ..++++||+||+|++... .+..++..++ ..
T Consensus 99 ~~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~------~~~~--l~~~~~vIiDE~H~l~~~~r~~~~~~ll~~l~~~~ 170 (720)
T 2zj8_A 99 AMATGDYDSKDEWLGKYDIIIATAEKFDSLLRH------GSSW--IKDVKILVADEIHLIGSRDRGATLEVILAHMLGKA 170 (720)
T ss_dssp EEECSCSSCCCGGGGGCSEEEECHHHHHHHHHH------TCTT--GGGEEEEEEETGGGGGCTTTHHHHHHHHHHHBTTB
T ss_pred EEecCCCCccccccCCCCEEEECHHHHHHHHHc------Chhh--hhcCCEEEEECCcccCCCcccHHHHHHHHHhhcCC
Confidence 8888864322 234689999999988643111 0011 257899999999998753 4445555554 56
Q ss_pred eEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcch
Q 010367 173 CKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNK 252 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k 252 (512)
++++||||+.+. .++..+++...+...+ --.+........+. ..+. .... .....+
T Consensus 171 ~ii~lSATl~n~----~~~~~~l~~~~~~~~~-------rp~~l~~~~~~~~~-----~~~~-~~~~-------~~~~~~ 226 (720)
T 2zj8_A 171 QIIGLSATIGNP----EELAEWLNAELIVSDW-------RPVKLRRGVFYQGF-----VTWE-DGSI-------DRFSSW 226 (720)
T ss_dssp EEEEEECCCSCH----HHHHHHTTEEEEECCC-------CSSEEEEEEEETTE-----EEET-TSCE-------EECSST
T ss_pred eEEEEcCCcCCH----HHHHHHhCCcccCCCC-------CCCcceEEEEeCCe-----eecc-ccch-------hhhhHH
Confidence 789999999742 2344444433322111 01111111110000 0000 0000 011222
Q ss_pred HHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC--------------------------------------CCcee
Q 010367 253 FRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR--------------------------------------KPMIY 294 (512)
Q Consensus 253 ~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~--------------------------------------~~~i~ 294 (512)
...+..++ ..+.++||||+++..++.++..|. +.++|
T Consensus 227 ~~~~~~~~-----~~~~~~LVF~~sr~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~~~~~v~~~h 301 (720)
T 2zj8_A 227 EELVYDAI-----RKKKGALIFVNMRRKAERVALELSKKVKSLLTKPEIRALNELADSLEENPTNEKLAKAIRGGVAFHH 301 (720)
T ss_dssp THHHHHHH-----HTTCCEEEECSCHHHHHHHHHHHHHHHGGGSCHHHHHHHHHHHHTSCSCHHHHHHHHHHTTTEEEEC
T ss_pred HHHHHHHH-----hCCCCEEEEecCHHHHHHHHHHHHHHHHHhcChhhHHHHHHHHHHHhcccchHHHHHHHhcCeeeec
Confidence 33333333 346899999999999988887762 45689
Q ss_pred CCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE----ec----CCCCCHHHHHHHhhcccccCCCcccc
Q 010367 295 GATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS----SHAGSRRQEAQRLGRILRAKGKLEDR 366 (512)
Q Consensus 295 g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~----~~----~~~~s~~~~~Q~~GR~~R~g~~~~~~ 366 (512)
|++++.+|..+++.|+++ .++|||+|+++++|+|+|++++||. ++ .+. |...+.||+||+||.|
T Consensus 302 ~~l~~~~R~~v~~~f~~g-~~~vlvaT~~l~~Gvdip~~~~VI~~~~~yd~~g~~~~-s~~~~~Qr~GRaGR~g------ 373 (720)
T 2zj8_A 302 AGLGRDERVLVEENFRKG-IIKAVVATPTLSAGINTPAFRVIIRDIWRYSDFGMERI-PIIEVHQMLGRAGRPK------ 373 (720)
T ss_dssp TTSCHHHHHHHHHHHHTT-SSCEEEECSTTGGGCCCCBSEEEECCSEECCSSSCEEC-CHHHHHHHHTTBCCTT------
T ss_pred CCCCHHHHHHHHHHHHCC-CCeEEEECcHhhccCCCCceEEEEcCCeeecCCCCccC-CHHHHHHHHhhcCCCC------
Confidence 999999999999999997 9999999999999999999999997 44 234 9999999999999998
Q ss_pred ccCCCCceeEEEEEEEeCCcHh
Q 010367 367 MAGGKEEYNAFFYSLVSTDTQE 388 (512)
Q Consensus 367 ~~~~~~~~~~~~y~lv~~~t~e 388 (512)
.+..+..|.+.+.+..+
T Consensus 374 -----~~~~G~~~~l~~~~~~~ 390 (720)
T 2zj8_A 374 -----YDEVGEGIIVSTSDDPR 390 (720)
T ss_dssp -----TCSEEEEEEECSSSCHH
T ss_pred -----CCCCceEEEEecCccHH
Confidence 44457777787776633
No 41
>2va8_A SSO2462, SKI2-type helicase; hydrolase, DNA repair, ATP-bindin nucleotide-binding; 2.30A {Sulfolobus solfataricus}
Probab=100.00 E-value=8.7e-32 Score=297.36 Aligned_cols=317 Identities=16% Similarity=0.200 Sum_probs=211.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
.|+|+|.+++..++..+ ++.++++|||+|||+++..++.. .+++++|++|+++|+.||.++++.+... ...+.
T Consensus 30 ~l~~~Q~~~i~~~~~~~--~~~lv~apTGsGKT~~~~l~il~~~~~~~~~il~i~P~r~La~q~~~~~~~~~~~-g~~v~ 106 (715)
T 2va8_A 30 KLNPPQTEAVKKGLLEG--NRLLLTSPTGSGKTLIAEMGIISFLLKNGGKAIYVTPLRALTNEKYLTFKDWELI-GFKVA 106 (715)
T ss_dssp BCCHHHHHHHHTTTTTT--CCEEEECCTTSCHHHHHHHHHHHHHHHSCSEEEEECSCHHHHHHHHHHHGGGGGG-TCCEE
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEcCCCCcHHHHHHHHHHHHHHHCCCeEEEEeCcHHHHHHHHHHHHHhhcC-CCEEE
Confidence 89999999999854444 39999999999999998766642 3679999999999999999999655332 35678
Q ss_pred EEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcccceE
Q 010367 101 RFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTKSHCK 174 (512)
Q Consensus 101 ~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~~~~~ 174 (512)
.++|+.... .....+|+|+|++++.....+. ...+ .++++||+||+|.+... .+..++..++..++
T Consensus 107 ~~~G~~~~~~~~~~~~~Iiv~Tpe~l~~~~~~~------~~~l--~~~~~vIiDE~H~l~~~~~~~~l~~i~~~~~~~~i 178 (715)
T 2va8_A 107 MTSGDYDTDDAWLKNYDIIITTYEKLDSLWRHR------PEWL--NEVNYFVLDELHYLNDPERGPVVESVTIRAKRRNL 178 (715)
T ss_dssp ECCSCSSSCCGGGGGCSEEEECHHHHHHHHHHC------CGGG--GGEEEEEECSGGGGGCTTTHHHHHHHHHHHHTSEE
T ss_pred EEeCCCCCchhhcCCCCEEEEcHHHHHHHHhCC------hhHh--hccCEEEEechhhcCCcccchHHHHHHHhcccCcE
Confidence 888764321 1236899999999886532110 0112 57899999999998653 44555555566789
Q ss_pred EEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHH-HHHHhhchHHHHHHhhcCcchH
Q 010367 175 LGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFS-EYLKKENSKKKQALYVMNPNKF 253 (512)
Q Consensus 175 l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~-~~l~~~~~~~~~~~~~~~~~k~ 253 (512)
++||||+.+. .++..+++...+...+ --.++.......+.....+. .|. .... ........+.
T Consensus 179 i~lSATl~n~----~~~~~~l~~~~~~~~~-------r~~~l~~~~~~~~~~~~~~~~~~~-~~~~----~~~~~~~~~~ 242 (715)
T 2va8_A 179 LALSATISNY----KQIAKWLGAEPVATNW-------RPVPLIEGVIYPERKKKEYNVIFK-DNTT----KKVHGDDAII 242 (715)
T ss_dssp EEEESCCTTH----HHHHHHHTCEEEECCC-------CSSCEEEEEEEECSSTTEEEEEET-TSCE----EEEESSSHHH
T ss_pred EEEcCCCCCH----HHHHHHhCCCccCCCC-------CCCCceEEEEecCCcccceeeecC-cchh----hhcccchHHH
Confidence 9999999742 2344445543322111 11111111111000000000 000 0000 0000011122
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----------------------------------------CCc
Q 010367 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----------------------------------------KPM 292 (512)
Q Consensus 254 ~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----------------------------------------~~~ 292 (512)
..+ .+.+ ..+.++||||+++..++.++..|. +.+
T Consensus 243 ~~~---~~~~--~~~~~~LVF~~s~~~~~~~a~~L~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~l~~~~~~~v~~ 317 (715)
T 2va8_A 243 AYT---LDSL--SKNGQVLVFRNSRKMAESTALKIANYMNFVSLDENALSEILKQLDDIEEGGSDEKELLKSLISKGVAY 317 (715)
T ss_dssp HHH---HHHH--TTTCCEEEECSSHHHHHHHHHHHHHTTTSSCCCHHHHHHHHHHHHTCCSSCHHHHHHHHHHHTTTEEE
T ss_pred HHH---HHHH--hcCCCEEEEECCHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHhhhccccccHHHHHHHhcCEEE
Confidence 222 2333 357899999999999988887762 456
Q ss_pred eeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE----ec-------CCCCCHHHHHHHhhcccccCC
Q 010367 293 IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----IS-------SHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 293 i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~----~~-------~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+||+++..+|..+++.|+++ .++|||+|+++++|||+|++++||. ++ .+. |...+.||+||+||.|.
T Consensus 318 ~h~~l~~~~r~~v~~~f~~g-~~~vlvaT~~l~~Gidip~~~~VI~~~~~~d~~~~~~~~~~-s~~~~~Qr~GRaGR~g~ 395 (715)
T 2va8_A 318 HHAGLSKALRDLIEEGFRQR-KIKVIVATPTLAAGVNLPARTVIIGDIYRFNKKIAGYYDEI-PIMEYKQMSGRAGRPGF 395 (715)
T ss_dssp ECTTSCHHHHHHHHHHHHTT-CSCEEEECGGGGGSSCCCBSEEEECCC---------------CHHHHHHHHTTBCCTTT
T ss_pred ECCCCCHHHHHHHHHHHHcC-CCeEEEEChHHhcccCCCceEEEEeCCeeccccCCCCCCcC-CHHHHHHHhhhcCCCCC
Confidence 89999999999999999998 9999999999999999999999997 66 444 99999999999999983
Q ss_pred CccccccCCCCceeEEEEEEEeCCc
Q 010367 362 KLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 362 ~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
+..+..|.+.+...
T Consensus 396 -----------~~~G~~~~l~~~~~ 409 (715)
T 2va8_A 396 -----------DQIGESIVVVRDKE 409 (715)
T ss_dssp -----------CSCEEEEEECSCGG
T ss_pred -----------CCCceEEEEeCCch
Confidence 34466777776544
No 42
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=99.97 E-value=9.7e-30 Score=289.58 Aligned_cols=262 Identities=18% Similarity=0.164 Sum_probs=185.6
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.++|+|+|.++++.++.+. +.++++|||+|||++++.++.. .+.++|||+|+++|+.|+.+.|.++. .....+
T Consensus 76 gf~pt~iQ~~ai~~il~g~---dvlv~ApTGSGKTl~~l~~il~~~~~~~~~Lil~PtreLa~Q~~~~l~~l~-~~~i~v 151 (1104)
T 4ddu_A 76 GKDLTGYQRLWAKRIVQGK---SFTMVAPTGVGKTTFGMMTALWLARKGKKSALVFPTVTLVKQTLERLQKLA-DEKVKI 151 (1104)
T ss_dssp SSCCCHHHHHHHHHHTTTC---CEEECCSTTCCHHHHHHHHHHHHHTTTCCEEEEESSHHHHHHHHHHHHTTS-CTTSCE
T ss_pred CCCCCHHHHHHHHHHHcCC---CEEEEeCCCCcHHHHHHHHHHHHHhcCCeEEEEechHHHHHHHHHHHHHhh-CCCCeE
Confidence 4589999999999988764 8999999999999988777654 35789999999999999999999975 445578
Q ss_pred EEEcCCcccc--------c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----------
Q 010367 100 CRFTSDSKER--------F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---------- 160 (512)
Q Consensus 100 ~~~~~~~~~~--------~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---------- 160 (512)
..++|+.... + .+.++|+|+|++.|... +..+...++++||+||||++...
T Consensus 152 ~~l~Gg~~~~er~~~~~~l~~g~~~IlV~Tp~rL~~~----------l~~l~~~~l~~lViDEaH~l~~~~r~~Dr~L~~ 221 (1104)
T 4ddu_A 152 FGFYSSMKKEEKEKFEKSFEEDDYHILVFSTQFVSKN----------REKLSQKRFDFVFVDDVDAVLKASRNIDTLLMM 221 (1104)
T ss_dssp EEECTTCCTTHHHHHHHHHHTSCCSEEEEEHHHHHHS----------HHHHHTSCCSEEEESCHHHHTTSSHHHHHHHHT
T ss_pred EEEeCCCCHHHHHHHHHHHhCCCCCEEEECHHHHHHH----------HHhhcccCcCEEEEeCCCccccccccchhhhHh
Confidence 8888876431 1 24589999999998654 22344578999999999986631
Q ss_pred -----H-HHHHHHhcc------------cceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEE
Q 010367 161 -----M-FRKVISLTK------------SHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVW 222 (512)
Q Consensus 161 -----~-~~~~l~~~~------------~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~ 222 (512)
. ...++..++ ..+++++||||.........+...++..+... ......+....+.
T Consensus 222 ~gf~~~~i~~il~~l~~~~~~~~~~~~~~~q~ll~SAT~~p~~~~~~~~~~~l~i~v~~~-------~~~~~~i~~~~~~ 294 (1104)
T 4ddu_A 222 VGIPEEIIRKAFSTIKQGKIYERPKNLKPGILVVSSATAKPRGIRPLLFRDLLNFTVGRL-------VSVARNITHVRIS 294 (1104)
T ss_dssp SSCCHHHHHHHHHHHHHTSCCCCCSSCCCCEEEEECBSSCCCSSTTHHHHHHTCCCCCBC-------CCCCCCEEEEEES
T ss_pred cCCCHHHHHHHHHhcccchhhhhhccCCCceEEEEcCCCCcHHHHHHHhhcceeEEeccC-------CCCcCCceeEEEe
Confidence 1 445555443 45789999996543322111222222111000 0011111111111
Q ss_pred cCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCC-ceeCC
Q 010367 223 CPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKP-MIYGA 296 (512)
Q Consensus 223 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~-~i~g~ 296 (512)
+ .|...+..++... +.++||||+++..++.++..| .+. .+||
T Consensus 295 ~---------------------------~k~~~L~~ll~~~----~~~~LVF~~s~~~a~~l~~~L~~~g~~~~~~lhg- 342 (1104)
T 4ddu_A 295 S---------------------------RSKEKLVELLEIF----RDGILIFAQTEEEGKELYEYLKRFKFNVGETWSE- 342 (1104)
T ss_dssp C---------------------------CCHHHHHHHHHHH----CSSEEEEESSSHHHHHHHHHHHHTTCCEEESSSS-
T ss_pred c---------------------------CHHHHHHHHHHhc----CCCEEEEECcHHHHHHHHHHHHhCCCCeeeEecC-
Confidence 1 1223444445442 479999999999999999998 234 5677
Q ss_pred CCHHHHHHHHHHhhCCCCccEEEE----eCCCcccccCcc-ccEEEEecCCC
Q 010367 297 TSHVERTKILQAFKCSRDLNTIFL----SKVGDNSIDIPE-ANVIIQISSHA 343 (512)
Q Consensus 297 ~~~~eR~~il~~F~~~~~~~vlv~----t~~~~~GlDlp~-~~~vI~~~~~~ 343 (512)
+|.+ ++.|+++ +++|||+ |+++++|||+|+ +++||+++.|.
T Consensus 343 ----~rr~-l~~F~~G-~~~VLVatas~TdvlarGIDip~~V~~VI~~d~P~ 388 (1104)
T 4ddu_A 343 ----FEKN-FEDFKVG-KINILIGVQAYYGKLTRGVDLPERIKYVIFWGTPS 388 (1104)
T ss_dssp ----HHHH-HHHHHHT-SCSEEEEETTTHHHHCCSCCCTTTCCEEEEESCCE
T ss_pred ----cHHH-HHHHHCC-CCCEEEEecCCCCeeEecCcCCCCCCEEEEECCCC
Confidence 2555 9999998 9999999 999999999999 99999998774
No 43
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=7.5e-29 Score=291.78 Aligned_cols=312 Identities=16% Similarity=0.170 Sum_probs=209.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc--------------CCCEEEEEcChhhHHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI--------------KKSCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~--------------~~~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
.+|.|.|.++++.++..+. +.++++|||+|||+++..++.+. +.++|+|+|+++|+.|..++|.
T Consensus 78 ~~ln~iQs~~~~~al~~~~--N~lv~APTGsGKTlva~l~il~~l~~~~~~~~~~~~~~~k~lyiaP~kALa~e~~~~l~ 155 (1724)
T 4f92_B 78 KTLNRIQSKLYRAALETDE--NLLLCAPTGAGKTNVALMCMLREIGKHINMDGTINVDDFKIIYIAPMRSLVQEMVGSFG 155 (1724)
T ss_dssp SBCCHHHHHTHHHHHTCCC--CEEEECCTTSCCHHHHHHHHHHHHGGGCCTTSSCCTTSCEEEEECSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHcCCC--cEEEEeCCcchHHHHHHHHHHHHHHhhccccccccCCCCEEEEECCHHHHHHHHHHHHH
Confidence 3688999999999998763 99999999999999998777432 2479999999999999999998
Q ss_pred HhhCCCCCcEEEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHHH
Q 010367 90 LWSTIQDDQICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRK 164 (512)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~~ 164 (512)
+.++-....|..++|+.... ....++|+||||+.+....++..+. ..+ ...++||+||+|.+..+ .+..
T Consensus 156 ~~~~~~gi~V~~~tGd~~~~~~~~~~~~IlVtTpEkld~llr~~~~~----~~l--~~v~~vIiDEvH~l~d~RG~~lE~ 229 (1724)
T 4f92_B 156 KRLATYGITVAELTGDHQLCKEEISATQIIVCTPEKWDIITRKGGER----TYT--QLVRLIILDEIHLLHDDRGPVLEA 229 (1724)
T ss_dssp HHHTTTTCCEEECCSSCSSCCTTGGGCSEEEECHHHHHHHTTSSTTH----HHH--TTEEEEEETTGGGGGSTTHHHHHH
T ss_pred HHHhhCCCEEEEEECCCCCCccccCCCCEEEECHHHHHHHHcCCccc----hhh--cCcCEEEEecchhcCCccHHHHHH
Confidence 87655556889999975421 2346889999999886654433221 223 57899999999988753 2222
Q ss_pred HHH-------hc-ccceEEEEcccCCCCcchHhhhHhhhCCc------eeeecHHHHHhCCCcccceeEEEEcCC---CH
Q 010367 165 VIS-------LT-KSHCKLGLTATLVREDERITDLNFLIGPK------LYEANWLDLVKGGFIANVQCAEVWCPM---TK 227 (512)
Q Consensus 165 ~l~-------~~-~~~~~l~LTATp~~~~~~~~~l~~l~gp~------~~~~~~~~l~~~~~l~~~~~~~~~~~~---~~ 227 (512)
++. .. ...++++||||..+.. ++..+++.. .+..+ ..|+......+.. ..
T Consensus 230 ~l~rl~~~~~~~~~~~riI~LSATl~N~~----dvA~wL~~~~~~~~~~~~~~---------~RPvpL~~~~~~~~~~~~ 296 (1724)
T 4f92_B 230 LVARAIRNIEMTQEDVRLIGLSATLPNYE----DVATFLRVDPAKGLFYFDNS---------FRPVPLEQTYVGITEKKA 296 (1724)
T ss_dssp HHHHHHHHHHHHTCCCEEEEEECSCTTHH----HHHHHTTCCHHHHEEECCGG---------GCSSCEEEECCEECCCCH
T ss_pred HHHHHHHHHHhCCCCCcEEEEecccCCHH----HHHHHhCCCCCCCeEEECCC---------CccCccEEEEeccCCcch
Confidence 222 11 2347899999986422 222222211 11111 1122222211111 11
Q ss_pred HHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-------------------
Q 010367 228 EFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL------------------- 288 (512)
Q Consensus 228 ~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L------------------- 288 (512)
......+ + ..+...+..+ ..++++||||+++..++.+++.|
T Consensus 297 ~~~~~~~--------------~----~~~~~~v~~~--~~~~~~LVF~~sR~~~~~~A~~l~~~~~~~~~~~~~~~~~~~ 356 (1724)
T 4f92_B 297 IKRFQIM--------------N----EIVYEKIMEH--AGKNQVLVFVHSRKETGKTARAIRDMCLEKDTLGLFLREGSA 356 (1724)
T ss_dssp HHHHHHH--------------H----HHHHHHHTTC--CSSCCEEEECSSTTTTHHHHHHHHHHHHHTTSTTCCSSCCTT
T ss_pred hhhhHHH--------------H----HHHHHHHHHH--hcCCcEEEECCCHHHHHHHHHHHHHHHhhccchhhhcccchh
Confidence 0000000 0 1122222222 34678999999987777666554
Q ss_pred -----------------------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE----ecC
Q 010367 289 -----------------------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISS 341 (512)
Q Consensus 289 -----------------------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~----~~~ 341 (512)
+++++||++++.+|..+.+.|++| .++|||||.+++.|||+|..++||. +++
T Consensus 357 ~~~~~~~~~~~~~~~~l~~~l~~Gva~HHagL~~~~R~~vE~~F~~G-~i~vlvaTsTLa~GVNlPa~~vVI~~~~~~~~ 435 (1724)
T 4f92_B 357 STEVLRTEAEQCKNLELKDLLPYGFAIHHAGMTRVDRTLVEDLFADK-HIQVLVSTATLAWGVNLPAHTVIIKGTQVYSP 435 (1724)
T ss_dssp CSSHHHHTTSCCSTHHHHHHTTTTEEEECSSSCTHHHHHHHHHHHTT-CCCEEEECHHHHHHSCCCBSEEEEECCEEEET
T ss_pred HHHHHHhhhcccccHHHHHHhhcCEEEEcCCCCHHHHHHHHHHHHCC-CCeEEEEcchhHhhCCCCCceEEEeCCEEecC
Confidence 134689999999999999999998 9999999999999999998888884 332
Q ss_pred CC-----CCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHh
Q 010367 342 HA-----GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQE 388 (512)
Q Consensus 342 ~~-----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e 388 (512)
.. -+...|.|++|||||.|. +..+..+-+.+.+..+
T Consensus 436 ~~~~~~~ls~~~~~Qm~GRAGR~g~-----------d~~G~~ii~~~~~~~~ 476 (1724)
T 4f92_B 436 EKGRWTELGALDILQMLGRAGRPQY-----------DTKGEGILITSHGELQ 476 (1724)
T ss_dssp TTTEEEECCHHHHHHHHTTBSCTTT-----------CSCEEEEEEEESTTCC
T ss_pred cCCCcccCCHHHHHHhhhhccCCCC-----------CCccEEEEEecchhHH
Confidence 21 288999999999999984 3335555555555433
No 44
>1gku_B Reverse gyrase, TOP-RG; topoisomerase, DNA supercoiling, archaea, helicase; 2.7A {Archaeoglobus fulgidus} SCOP: c.37.1.16 c.37.1.16 e.10.1.1 PDB: 1gl9_B*
Probab=99.96 E-value=4.6e-28 Score=275.83 Aligned_cols=259 Identities=14% Similarity=0.204 Sum_probs=177.0
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCC--
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDD-- 97 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~-- 97 (512)
.+.+ |+|.++++.++.+. +.++++|||+|||+.++.++... +.++|||+|+++|+.|+.+.+.+++.....
T Consensus 55 g~~p-~iQ~~ai~~il~g~---dvlv~apTGSGKTl~~lp~l~~~~~~~~~~lil~PtreLa~Q~~~~l~~l~~~~~i~~ 130 (1054)
T 1gku_B 55 GEPR-AIQKMWAKRILRKE---SFAATAPTGVGKTSFGLAMSLFLALKGKRCYVIFPTSLLVIQAAETIRKYAEKAGVGT 130 (1054)
T ss_dssp CSCC-HHHHHHHHHHHTTC---CEECCCCBTSCSHHHHHHHHHHHHTTSCCEEEEESCHHHHHHHHHHHHHHHTTTCCSG
T ss_pred CCCH-HHHHHHHHHHHhCC---CEEEEcCCCCCHHHHHHHHHHHHhhcCCeEEEEeccHHHHHHHHHHHHHHHhhcCCCc
Confidence 4558 99999999999764 89999999999998555555443 468999999999999999999998754444
Q ss_pred --cEEEEcCCcccc--------ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc--hHHHHH
Q 010367 98 --QICRFTSDSKER--------FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKV 165 (512)
Q Consensus 98 --~v~~~~~~~~~~--------~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~--~~~~~~ 165 (512)
.+..++|+.... +.. .+|+|+|++.|.....+ + ..++++|+||||++.. ..+..+
T Consensus 131 ~~~v~~~~Gg~~~~~~~~~~~~l~~-~~IlV~TP~~L~~~l~~----------L--~~l~~lViDEah~~l~~~~~~~~i 197 (1054)
T 1gku_B 131 ENLIGYYHGRIPKREKENFMQNLRN-FKIVITTTQFLSKHYRE----------L--GHFDFIFVDDVDAILKASKNVDKL 197 (1054)
T ss_dssp GGSEEECCSSCCSHHHHHHHHSGGG-CSEEEEEHHHHHHCSTT----------S--CCCSEEEESCHHHHHTSTHHHHHH
T ss_pred cceEEEEeCCCChhhHHHHHhhccC-CCEEEEcHHHHHHHHHH----------h--ccCCEEEEeChhhhhhccccHHHH
Confidence 688888864321 223 89999999999765332 2 4788999999999875 466666
Q ss_pred HHhcc------------cceEEEEcccCCCCcchHhhh-HhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHH
Q 010367 166 ISLTK------------SHCKLGLTATLVREDERITDL-NFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSE 232 (512)
Q Consensus 166 l~~~~------------~~~~l~LTATp~~~~~~~~~l-~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~ 232 (512)
+..+. ....+++|||+.........+ ..... .... ..............
T Consensus 198 ~~~lgf~~~~~~~~~~~~~q~~l~SAT~t~~~~~~~~~~~~~~~---i~v~------~~~~~~~~i~~~~~--------- 259 (1054)
T 1gku_B 198 LHLLGFHYDLKTKSWVGEARGCLMVSTATAKKGKKAELFRQLLN---FDIG------SSRITVRNVEDVAV--------- 259 (1054)
T ss_dssp HHHTTEEEETTTTEEEECCSSEEEECCCCSCCCTTHHHHHHHHC---CCCS------CCEECCCCEEEEEE---------
T ss_pred HHHhCcchhhhhhhcccCCceEEEEecCCCchhHHHHHhhcceE---EEcc------CcccCcCCceEEEe---------
Confidence 65553 235688999987652111111 11111 0000 00000001111111
Q ss_pred HHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCC----CceeCCCCHHHHHHHHHH
Q 010367 233 YLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK----PMIYGATSHVERTKILQA 308 (512)
Q Consensus 233 ~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~----~~i~g~~~~~eR~~il~~ 308 (512)
...|...+..++. ..+.++||||+++..++.++..|.. ..+||++ .++++.
T Consensus 260 ----------------~~~k~~~L~~ll~----~~~~~~LVF~~t~~~a~~l~~~L~~~~~v~~lhg~~-----~~~l~~ 314 (1054)
T 1gku_B 260 ----------------NDESISTLSSILE----KLGTGGIIYARTGEEAEEIYESLKNKFRIGIVTATK-----KGDYEK 314 (1054)
T ss_dssp ----------------SCCCTTTTHHHHT----TSCSCEEEEESSHHHHHHHHHTTTTSSCEEECTTSS-----SHHHHH
T ss_pred ----------------chhHHHHHHHHHh----hcCCCEEEEEcCHHHHHHHHHHHhhccCeeEEeccH-----HHHHHH
Confidence 1122233444443 2256899999999999999999853 4688887 478999
Q ss_pred hhCCCCccEEEE----eCCCcccccCccc-cEEEEecCC
Q 010367 309 FKCSRDLNTIFL----SKVGDNSIDIPEA-NVIIQISSH 342 (512)
Q Consensus 309 F~~~~~~~vlv~----t~~~~~GlDlp~~-~~vI~~~~~ 342 (512)
|+.| +++|||+ |+++++|||+|++ ++||+++.|
T Consensus 315 F~~G-~~~VLVaTas~Tdv~~rGIDip~VI~~VI~~~~P 352 (1054)
T 1gku_B 315 FVEG-EIDHLIGTAHYYGTLVRGLDLPERIRFAVFVGCP 352 (1054)
T ss_dssp HHHT-SCSEEEEECC------CCSCCTTTCCEEEEESCC
T ss_pred HHcC-CCcEEEEecCCCCeeEeccccCCcccEEEEeCCC
Confidence 9998 9999999 8999999999995 999999887
No 45
>4f92_B U5 small nuclear ribonucleoprotein 200 kDa helica; RNP remodeling, PRE-mRNA splicing, spliceosome catalytic ACT DEXD/H-box RNA helicase; HET: SAN; 2.66A {Homo sapiens} PDB: 4f93_B* 4f91_B
Probab=99.96 E-value=4.6e-28 Score=285.09 Aligned_cols=299 Identities=14% Similarity=0.193 Sum_probs=200.6
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhC-CCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWST-IQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~-~~~~~ 98 (512)
.+.|.|.+++..++..+ .+.++++|||+|||+++..++.+. ++++|+++|+++|+.|..++|.+.++ ....+
T Consensus 926 ~fnpiQ~q~~~~l~~~~--~nvlv~APTGSGKTliaelail~~l~~~~~~kavyi~P~raLa~q~~~~~~~~f~~~~g~~ 1003 (1724)
T 4f92_B 926 FFNPIQTQVFNTVYNSD--DNVFVGAPTGSGKTICAEFAILRMLLQSSEGRCVYITPMEALAEQVYMDWYEKFQDRLNKK 1003 (1724)
T ss_dssp BCCHHHHHHHHHHHSCC--SCEEEECCTTSCCHHHHHHHHHHHHHHCTTCCEEEECSCHHHHHHHHHHHHHHHTTTSCCC
T ss_pred CCCHHHHHHHHHHhcCC--CcEEEEeCCCCCchHHHHHHHHHHHHhCCCCEEEEEcChHHHHHHHHHHHHHHhchhcCCE
Confidence 47899999999999876 389999999999999987777443 46899999999999999999976543 33457
Q ss_pred EEEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHHHHHHhc----
Q 010367 99 ICRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT---- 169 (512)
Q Consensus 99 v~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~~~l~~~---- 169 (512)
|..++|+.... ....++|+|+||+.+....++... ...+ .+.++||+||+|.+... .+..++..+
T Consensus 1004 V~~ltGd~~~~~~~~~~~~IiV~TPEkld~llr~~~~----~~~l--~~v~lvViDE~H~l~d~rg~~le~il~rl~~i~ 1077 (1724)
T 4f92_B 1004 VVLLTGETSTDLKLLGKGNIIISTPEKWDILSRRWKQ----RKNV--QNINLFVVDEVHLIGGENGPVLEVICSRMRYIS 1077 (1724)
T ss_dssp EEECCSCHHHHHHHHHHCSEEEECHHHHHHHHTTTTT----CHHH--HSCSEEEECCGGGGGSTTHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCcchhhcCCCCEEEECHHHHHHHHhCccc----cccc--ceeeEEEeechhhcCCCCCccHHHHHHHHHHHH
Confidence 88888875422 124578999999987554332111 1122 46799999999998753 333333322
Q ss_pred ----ccceEEEEcccCCCCcchHhhhHhhhCC---ceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHH
Q 010367 170 ----KSHCKLGLTATLVREDERITDLNFLIGP---KLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKK 242 (512)
Q Consensus 170 ----~~~~~l~LTATp~~~~~~~~~l~~l~gp---~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 242 (512)
+..+.++||||..+..+ +...++. ..+..... .--.+........+..... ..+.
T Consensus 1078 ~~~~~~~riI~lSATl~N~~d----la~WL~~~~~~~~~~~~~-----~RPvpL~~~i~~~~~~~~~-~~~~-------- 1139 (1724)
T 4f92_B 1078 SQIERPIRIVALSSSLSNAKD----VAHWLGCSATSTFNFHPN-----VRPVPLELHIQGFNISHTQ-TRLL-------- 1139 (1724)
T ss_dssp HTTSSCCEEEEEESCBTTHHH----HHHHHTCCSTTEEECCGG-----GCSSCEEEEEEEECCCSHH-HHHH--------
T ss_pred hhcCCCceEEEEeCCCCCHHH----HHHHhCCCCCCeEEeCCC-----CCCCCeEEEEEeccCCCch-hhhh--------
Confidence 23478999999864322 2222321 11111100 0001122222222211110 0000
Q ss_pred HHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh----------------------------------
Q 010367 243 QALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---------------------------------- 288 (512)
Q Consensus 243 ~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---------------------------------- 288 (512)
.++ ..+...+..+ ..+.++||||+++..++.++..|
T Consensus 1140 ----~~~----~~~~~~i~~~--~~~~~~lVF~~sR~~~~~~A~~L~~~~~~~~~~~~~~~~~~~~l~~~l~~~~d~~L~ 1209 (1724)
T 4f92_B 1140 ----SMA----KPVYHAITKH--SPKKPVIVFVPSRKQTRLTAIDILTTCAADIQRQRFLHCTEKDLIPYLEKLSDSTLK 1209 (1724)
T ss_dssp ----TTH----HHHHHHHHHH--CSSSCEEEEESSHHHHHHHHHHHHHHHHHTTCTTTTBCSCHHHHHHHHTTCCCHHHH
T ss_pred ----hhc----chHHHHHHHh--cCCCCeeeeCCCHHHHHHHHHHHHHHHhhccchhhhhcccHHHHHHHHhhcccHHHH
Confidence 000 1122223333 45778999999999888776554
Q ss_pred -----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE----ecC------CCCCHHHHHHHh
Q 010367 289 -----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----ISS------HAGSRRQEAQRL 353 (512)
Q Consensus 289 -----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~----~~~------~~~s~~~~~Q~~ 353 (512)
++.++||++++.+|..+.+.|++| .++|||||++++.|+|+|...+||. ++. +. +...|.|++
T Consensus 1210 ~~l~~GIa~hHagL~~~~R~~VE~lF~~G-~i~VLvaT~tlA~GVnlPa~~VVI~~~~~~dg~~~~~~~~-s~~~~~Qm~ 1287 (1724)
T 4f92_B 1210 ETLLNGVGYLHEGLSPMERRLVEQLFSSG-AIQVVVASRSLCWGMNVAAHLVIIMDTQYYNGKIHAYVDY-PIYDVLQMV 1287 (1724)
T ss_dssp HHHHTTEEEECTTSCHHHHHHHHHHHHHT-SBCEEEEEGGGSSSCCCCBSEEEEECSEEEETTTTEEEEC-CHHHHHHHH
T ss_pred HHHhCCEEEECCCCCHHHHHHHHHHHHCC-CCeEEEEChHHHcCCCCCccEEEEecCccccCcccccCCC-CHHHHHHhh
Confidence 245689999999999999999998 9999999999999999998778773 211 23 789999999
Q ss_pred hcccccCC
Q 010367 354 GRILRAKG 361 (512)
Q Consensus 354 GR~~R~g~ 361 (512)
||+||.|.
T Consensus 1288 GRAGR~g~ 1295 (1724)
T 4f92_B 1288 GHANRPLQ 1295 (1724)
T ss_dssp TTBCCTTT
T ss_pred ccccCCCC
Confidence 99999994
No 46
>2v6i_A RNA helicase; membrane, hydrolase, transmembrane, RNA replication, viral replication, nucleotide-binding; 2.10A {Kokobera virus} PDB: 2v6j_A
Probab=99.95 E-value=1.2e-27 Score=248.07 Aligned_cols=247 Identities=17% Similarity=0.143 Sum_probs=160.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHH----hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~ 119 (512)
++.++++|||+|||++++.++. ..+.+++|++|+++|+.|+.+.|.. . .+...++...........+.+.
T Consensus 3 ~~~lv~a~TGsGKT~~~l~~~l~~~~~~g~~~lvl~Pt~~La~Q~~~~~~~---~---~v~~~~~~~~~~~~~~~~~~~~ 76 (431)
T 2v6i_A 3 ELTVLDLHPGAGKTRRVLPQLVREAVKKRLRTVILAPTRVVASEMYEALRG---E---PIRYMTPAVQSERTGNEIVDFM 76 (431)
T ss_dssp CEEEEECCTTSCTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT---S---CEEEC---------CCCSEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHHHhCCCCEEEECcHHHHHHHHHHHhCC---C---eEEEEecCccccCCCCceEEEE
Confidence 4899999999999999855543 3456999999999999999987762 2 4555555433222334556677
Q ss_pred chhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch--HHHHHHHhc---ccceEEEEcccCCCCcchHhhhHhh
Q 010367 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--MFRKVISLT---KSHCKLGLTATLVREDERITDLNFL 194 (512)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--~~~~~l~~~---~~~~~l~LTATp~~~~~~~~~l~~l 194 (512)
|.+.+.. .++......++++||+||+|++... .....+..+ ...++|+|||||.+....... -
T Consensus 77 ~~~~l~~---------~l~~~~~~~~l~~vViDEaH~~~~~~~~~~~~l~~~~~~~~~~~l~~SAT~~~~~~~~~~---~ 144 (431)
T 2v6i_A 77 CHSTFTM---------KLLQGVRVPNYNLYIMDEAHFLDPASVAARGYIETRVSMGDAGAIFMTATPPGTTEAFPP---S 144 (431)
T ss_dssp EHHHHHH---------HHHHTCCCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHTTSCEEEEEESSCTTCCCSSCC---C
T ss_pred chHHHHH---------HHhcCccccCCCEEEEeCCccCCccHHHHHHHHHHHhhCCCCcEEEEeCCCCcchhhhcC---C
Confidence 7776632 2222222367899999999998421 122222222 356889999999864221000 0
Q ss_pred hCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEE
Q 010367 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (512)
Q Consensus 195 ~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf 274 (512)
.+ + ...+....+.. ....++. ++ . ..+.++|||
T Consensus 145 -~~-----------------~--i~~~~~~~~~~----------------------~~~~~~~-~l---~-~~~~~~lVF 177 (431)
T 2v6i_A 145 -NS-----------------P--IIDEETRIPDK----------------------AWNSGYE-WI---T-EFDGRTVWF 177 (431)
T ss_dssp -SS-----------------C--CEEEECCCCSS----------------------CCSSCCH-HH---H-SCSSCEEEE
T ss_pred -CC-----------------c--eeeccccCCHH----------------------HHHHHHH-HH---H-cCCCCEEEE
Confidence 00 0 00110000000 0000111 11 1 235689999
Q ss_pred ecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccE--------------
Q 010367 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANV-------------- 335 (512)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~-------------- 335 (512)
|+++..++.+++.| .+..+||+ +|.++++.|+++ +++|||+|+++++|+|+|...+
T Consensus 178 ~~~~~~~~~l~~~L~~~~~~v~~lhg~----~r~~~~~~f~~g-~~~vLVaT~v~e~GiDip~~~VI~~g~~~~~v~d~~ 252 (431)
T 2v6i_A 178 VHSIKQGAEIGTCLQKAGKKVLYLNRK----TFESEYPKCKSE-KWDFVITTDISEMGANFKADRVIDPRKTIKPILLDG 252 (431)
T ss_dssp CSSHHHHHHHHHHHHHTTCCEEEESTT----THHHHTTHHHHS-CCSEEEECGGGGTSCCCCCSEEEECCEEEEEEEETT
T ss_pred eCCHHHHHHHHHHHHHcCCeEEEeCCc----cHHHHHHhhcCC-CCeEEEECchHHcCcccCCcEEEecCccccceeccc
Confidence 99999999999998 34568886 678899999998 9999999999999999994333
Q ss_pred --EEEecCCCCCHHHHHHHhhcccccCC
Q 010367 336 --IIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 336 --vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|+++.+. +..+|.||+||+||.|+
T Consensus 253 ~~vi~~~~p~-~~~~~~Qr~GR~GR~g~ 279 (431)
T 2v6i_A 253 RVSMQGPIAI-TPASAAQRRGRIGRNPE 279 (431)
T ss_dssp EEEEEEEEEC-CHHHHHHHHTTSSCCTT
T ss_pred ceeecccccC-CHHHHHHhhhccCCCCC
Confidence 45666665 99999999999999985
No 47
>2jlq_A Serine protease subunit NS3; ribonucleoprotein, nucleotide-binding, viral nucleoprotein, endoplasmic reticulum, helicase, hydrolase; 1.67A {Dengue virus 4} PDB: 2jly_A* 2jls_A* 2jlu_A 2jlv_A* 2jlw_A 2jlx_A* 2jlz_A* 2jlr_A* 2bmf_A 2bhr_A
Probab=99.95 E-value=5.4e-28 Score=252.36 Aligned_cols=260 Identities=18% Similarity=0.148 Sum_probs=170.4
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH----hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
++.|.|+ +++.++.++ ...++++|||+|||++++.++. ..+.++||++|+++|+.|+.+++..+ .+.
T Consensus 4 q~~~iq~-~i~~~l~~~--~~~lv~a~TGsGKT~~~~~~~l~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~ 74 (451)
T 2jlq_A 4 MGEPDYE-VDEDIFRKK--RLTIMDLHPGAGKTKRILPSIVREALLRRLRTLILAPTRVVAAEMEEALRGL------PIR 74 (451)
T ss_dssp CCSCCCC-CCGGGGSTT--CEEEECCCTTSSCCTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE
T ss_pred CCCCcHH-HHHHHHhcC--CeEEEECCCCCCHhhHHHHHHHHHHHhcCCcEEEECCCHHHHHHHHHHhcCc------eee
Confidence 3445553 567677665 2558999999999998655542 23568999999999999999988532 232
Q ss_pred EEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHH---HH---HhcccceE
Q 010367 101 RFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRK---VI---SLTKSHCK 174 (512)
Q Consensus 101 ~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~---~l---~~~~~~~~ 174 (512)
.-.............|.++|++.+... +.......++++||+||||++ ...+.. .+ ...+..++
T Consensus 75 ~~~~~~~~~~~~~~~i~~~t~~~l~~~---------l~~~~~l~~~~~iViDEah~~-~~~~~~~~~~~~~~~~~~~~~~ 144 (451)
T 2jlq_A 75 YQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFT-DPCSVAARGYISTRVEMGEAAA 144 (451)
T ss_dssp ECCTTCSCCCCSSCCEEEEEHHHHHHH---------HHHCSCCCCCSEEEEETTTCC-SHHHHHHHHHHHHHHHTTSCEE
T ss_pred eeeccccccCCCCceEEEEChHHHHHH---------hhCcccccCCCEEEEeCCccC-CcchHHHHHHHHHhhcCCCceE
Confidence 222222112234567889999877532 122222257899999999987 322111 11 11235678
Q ss_pred EEEcccCCCCcchHhhhHhhh-CCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchH
Q 010367 175 LGLTATLVREDERITDLNFLI-GPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKF 253 (512)
Q Consensus 175 l~LTATp~~~~~~~~~l~~l~-gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~ 253 (512)
++|||||....... +. .+.... +....+.. .|. .+
T Consensus 145 i~~SAT~~~~~~~~-----~~~~~~~~~-------------------~~~~~p~~---~~~----------------~~- 180 (451)
T 2jlq_A 145 IFMTATPPGSTDPF-----PQSNSPIED-------------------IEREIPER---SWN----------------TG- 180 (451)
T ss_dssp EEECSSCTTCCCSS-----CCCSSCEEE-------------------EECCCCSS---CCS----------------SS-
T ss_pred EEEccCCCccchhh-----hcCCCceEe-------------------cCccCCch---hhH----------------HH-
Confidence 99999997532220 11 111110 00011100 000 00
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccc
Q 010367 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (512)
Q Consensus 254 ~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~Gl 328 (512)
+. .+ . ..+.++||||+++..++.+++.|. +..+||++ +.++++.|+++ +.+|||+|+++++|+
T Consensus 181 --~~-~l---~-~~~~~~lVF~~s~~~a~~l~~~L~~~g~~~~~lh~~~----~~~~~~~f~~g-~~~vLVaT~v~~~Gi 248 (451)
T 2jlq_A 181 --FD-WI---T-DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRKT----FDTEYPKTKLT-DWDFVVTTDISEMGA 248 (451)
T ss_dssp --CH-HH---H-HCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECTTT----HHHHGGGGGSS-CCSEEEECGGGGSSC
T ss_pred --HH-HH---H-hCCCCEEEEcCCHHHHHHHHHHHHHcCCeEEECCHHH----HHHHHHhhccC-CceEEEECCHHHhCc
Confidence 01 11 1 235589999999999999999993 33577764 46789999997 999999999999999
Q ss_pred cCccccEEEEec--------------------CCCCCHHHHHHHhhcccccCC
Q 010367 329 DIPEANVIIQIS--------------------SHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 329 Dlp~~~~vI~~~--------------------~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|+|+ ++||+++ .|. |..+|+||+||+||.|.
T Consensus 249 Dip~-~~VI~~~~~~~~~~d~~~~~~l~~~~~~p~-s~~~y~Qr~GRaGR~g~ 299 (451)
T 2jlq_A 249 NFRA-GRVIDPRRCLKPVILTDGPERVILAGPIPV-TPASAAQRRGRIGRNPA 299 (451)
T ss_dssp CCCC-SEEEECCEEEEEEEECSSSCEEEEEEEEEC-CHHHHHHHHTTSSCCTT
T ss_pred CCCC-CEEEECCCcccccccccccceeeecccccC-CHHHHHHhccccCCCCC
Confidence 9999 9999875 554 99999999999999994
No 48
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=99.95 E-value=2.2e-28 Score=254.23 Aligned_cols=245 Identities=15% Similarity=0.138 Sum_probs=151.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVT 119 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~ 119 (512)
++.++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+.+..+ .+....+... .++
T Consensus 9 ~~vlv~a~TGSGKT~~~l~~~l~~~~~~~~~~lil~Ptr~La~Q~~~~l~~~------~v~~~~~~~~---------~v~ 73 (440)
T 1yks_A 9 MTTVLDFHPGAGKTRRFLPQILAECARRRLRTLVLAPTRVVLSEMKEAFHGL------DVKFHTQAFS---------AHG 73 (440)
T ss_dssp CEEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEEEESSCCC---------CCC
T ss_pred CCEEEEcCCCCCHHHHHHHHHHHHHHhcCCeEEEEcchHHHHHHHHHHHhcC------CeEEecccce---------ecc
Confidence 48999999999999998655533 3458999999999999999988754 2332222111 255
Q ss_pred chhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHhcccceEEEEcccCCCCcchHhhhHhh
Q 010367 120 TYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISLTKSHCKLGLTATLVREDERITDLNFL 194 (512)
Q Consensus 120 T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~~~~~~~l~LTATp~~~~~~~~~l~~l 194 (512)
|++.+........-...+.......+++++|+||+|++... .+...+......++++|||||......... .
T Consensus 74 Tp~~l~~~l~~~~l~~~~~~~~~~~~l~~vViDEah~~~~~~~~~~~~~~~~~~~~~~~~l~~SAT~~~~~~~~~~---~ 150 (440)
T 1yks_A 74 SGREVIDAMCHATLTYRMLEPTRVVNWEVIIMDEAHFLDPASIAARGWAAHRARANESATILMTATPPGTSDEFPH---S 150 (440)
T ss_dssp CSSCCEEEEEHHHHHHHHTSSSCCCCCSEEEETTTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCSSCC---C
T ss_pred CCccceeeecccchhHhhhCcccccCccEEEEECccccCcchHHHHHHHHHHhccCCceEEEEeCCCCchhhhhhh---c
Confidence 55554433221100011111111267899999999998211 121111112356899999999754332100 0
Q ss_pred hCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEE
Q 010367 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (512)
Q Consensus 195 ~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf 274 (512)
.+ +.......++. ..+...+..+. ..+.++|||
T Consensus 151 ~~------------------~~~~~~~~~~~------------------------~~~~~~~~~l~-----~~~~~~lVF 183 (440)
T 1yks_A 151 NG------------------EIEDVQTDIPS------------------------EPWNTGHDWIL-----ADKRPTAWF 183 (440)
T ss_dssp SS------------------CEEEEECCCCS------------------------SCCSSSCHHHH-----HCCSCEEEE
T ss_pred CC------------------CeeEeeeccCh------------------------HHHHHHHHHHH-----hcCCCEEEE
Confidence 00 11111111110 00001112222 236799999
Q ss_pred ecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE-----------
Q 010367 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ----------- 338 (512)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~----------- 338 (512)
|+++..++.+++.| .+..+|| ++|.++++.|+++ +++|||+|+++++|+|+| +++||+
T Consensus 184 ~~s~~~a~~l~~~L~~~~~~v~~lhg----~~R~~~~~~F~~g-~~~vLVaT~v~e~GiDip-v~~VI~~g~~~~pv~~~ 257 (440)
T 1yks_A 184 LPSIRAANVMAASLRKAGKSVVVLNR----KTFEREYPTIKQK-KPDFILATDIAEMGANLC-VERVLDCRTAFKPVLVD 257 (440)
T ss_dssp CSCHHHHHHHHHHHHHTTCCEEECCS----SSCC--------C-CCSEEEESSSTTCCTTCC-CSEEEECCEEEEEEEET
T ss_pred eCCHHHHHHHHHHHHHcCCCEEEecc----hhHHHHHhhhcCC-CceEEEECChhheeeccC-ceEEEeCCccceeeecc
Confidence 99999999999998 3456888 4688999999998 999999999999999999 999885
Q ss_pred --------ecCCCCCHHHHHHHhhcccccC
Q 010367 339 --------ISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 339 --------~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
++.|. +..+|.||+||+||.|
T Consensus 258 ~~~~~vi~~~~p~-~~~~~~Qr~GR~GR~g 286 (440)
T 1yks_A 258 EGRKVAIKGPLRI-SASSAAQRRGRIGRNP 286 (440)
T ss_dssp TTTEEEEEEEEEC-CHHHHHHHHTTSSCCT
T ss_pred cccceeecccccc-CHHHHHHhccccCCCC
Confidence 55565 9999999999999985
No 49
>2z83_A Helicase/nucleoside triphosphatase; hydrolase, membrane, nucleotide-binding, RNA replication, transmembrane, viral protein; 1.80A {Japanese encephalitis virus} PDB: 2v8o_A 2qeq_A
Probab=99.95 E-value=3e-28 Score=254.75 Aligned_cols=251 Identities=17% Similarity=0.160 Sum_probs=159.6
Q ss_pred HHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccC
Q 010367 37 MFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRG 112 (512)
Q Consensus 37 ~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~ 112 (512)
++..+ ++.++++|||+|||++++.++.. .+.++||++|+++|+.|+.+.+..+ .+....+........
T Consensus 17 ~l~~~--~~vlv~a~TGsGKT~~~~l~il~~~~~~~~~~lvl~Ptr~La~Q~~~~l~g~------~v~~~~~~~~~~~t~ 88 (459)
T 2z83_A 17 MLRKR--QMTVLDLHPGSGKTRKILPQIIKDAIQQRLRTAVLAPTRVVAAEMAEALRGL------PVRYQTSAVQREHQG 88 (459)
T ss_dssp GGSTT--CEEEECCCTTSCTTTTHHHHHHHHHHHTTCCEEEEECSHHHHHHHHHHTTTS------CEEECC--------C
T ss_pred HHhcC--CcEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEECchHHHHHHHHHHhcCc------eEeEEecccccCCCC
Confidence 34444 38999999999999997655532 3568999999999999999988732 232222221111122
Q ss_pred CCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-----hHHHHHHHhcccceEEEEcccCCCCcch
Q 010367 113 NAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-----HMFRKVISLTKSHCKLGLTATLVREDER 187 (512)
Q Consensus 113 ~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-----~~~~~~l~~~~~~~~l~LTATp~~~~~~ 187 (512)
...+.+.|.+.+... +.......++++||+||||+... ..+..........++++|||||......
T Consensus 89 ~~~i~~~~~~~l~~~---------l~~~~~l~~~~~iViDEaH~~~~~~~~~~~~~~~~~~~~~~~~il~SAT~~~~~~~ 159 (459)
T 2z83_A 89 NEIVDVMCHATLTHR---------LMSPNRVPNYNLFVMDEAHFTDPASIAARGYIATKVELGEAAAIFMTATPPGTTDP 159 (459)
T ss_dssp CCSEEEEEHHHHHHH---------HHSCC-CCCCSEEEESSTTCCSHHHHHHHHHHHHHHHTTSCEEEEECSSCTTCCCS
T ss_pred CcEEEEEchHHHHHH---------hhccccccCCcEEEEECCccCCchhhHHHHHHHHHhccCCccEEEEEcCCCcchhh
Confidence 344667777665321 11111125789999999999632 2333333333567899999999754322
Q ss_pred HhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcC
Q 010367 188 ITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQR 267 (512)
Q Consensus 188 ~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~ 267 (512)
... ...|. .. +....+...+ ... + .++. ..
T Consensus 160 ~~~---~~~pi------------------~~--~~~~~~~~~~-------------------~~~---~-~~l~----~~ 189 (459)
T 2z83_A 160 FPD---SNAPI------------------HD--LQDEIPDRAW-------------------SSG---Y-EWIT----EY 189 (459)
T ss_dssp SCC---CSSCE------------------EE--EECCCCSSCC-------------------SSC---C-HHHH----HC
T ss_pred hcc---CCCCe------------------EE--ecccCCcchh-------------------HHH---H-HHHH----hc
Confidence 100 00011 00 1000000000 000 0 1111 23
Q ss_pred CCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEE----
Q 010367 268 GDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQ---- 338 (512)
Q Consensus 268 g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~---- 338 (512)
+.++||||+++..++.+++.|. +..+||+ +|.++++.|+++ +.+|||+|+++++|+|+|+ ++||.
T Consensus 190 ~~~~LVF~~s~~~~~~l~~~L~~~g~~v~~lh~~----~R~~~~~~f~~g-~~~iLVaT~v~~~GiDip~-~~VI~~G~~ 263 (459)
T 2z83_A 190 AGKTVWFVASVKMGNEIAMCLQRAGKKVIQLNRK----SYDTEYPKCKNG-DWDFVITTDISEMGANFGA-SRVIDCRKS 263 (459)
T ss_dssp CSCEEEECSCHHHHHHHHHHHHHTTCCEEEESTT----CCCCCGGGSSSC-CCSEEEESSCC---CCCSC-SEEEECCEE
T ss_pred CCCEEEEeCChHHHHHHHHHHHhcCCcEEecCHH----HHHHHHhhccCC-CceEEEECChHHhCeecCC-CEEEECCcc
Confidence 5699999999999999999982 3457874 678899999997 9999999999999999999 99987
Q ss_pred ----------------ecCCCCCHHHHHHHhhcccccCC
Q 010367 339 ----------------ISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 339 ----------------~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++.|. |+..|+||+||+||.|.
T Consensus 264 ~~~~~~~~~~~~~~~~~d~p~-s~~~~~QR~GRaGR~g~ 301 (459)
T 2z83_A 264 VKPTILEEGEGRVILGNPSPI-TSASAAQRRGRVGRNPN 301 (459)
T ss_dssp CCEEEECSSSCEEEECSCEEC-CHHHHHHHHTTSSCCTT
T ss_pred cccccccccccccccccCCCC-CHHHHHHhccccCCCCC
Confidence 44554 99999999999999883
No 50
>2xau_A PRE-mRNA-splicing factor ATP-dependent RNA helica; hydrolase, ribosome biogenesis, ATPase, ATP-binding, OB-fold; HET: ADP; 1.90A {Saccharomyces cerevisiae} PDB: 3kx2_B*
Probab=99.95 E-value=6.4e-27 Score=258.07 Aligned_cols=288 Identities=15% Similarity=0.171 Sum_probs=193.5
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.+.+.|++++..++..+. ..++++|||+|||++.-.++... +..++|++|+++|+.|+.+.+...++.....
T Consensus 93 lP~~~q~~~i~~~l~~~~--~vii~gpTGSGKTtllp~ll~~~~~~~~~g~~ilvl~P~r~La~q~~~~l~~~~~~~v~~ 170 (773)
T 2xau_A 93 LPVHAQRDEFLKLYQNNQ--IMVFVGETGSGKTTQIPQFVLFDEMPHLENTQVACTQPRRVAAMSVAQRVAEEMDVKLGE 170 (773)
T ss_dssp SGGGGGHHHHHHHHHHCS--EEEEECCTTSSHHHHHHHHHHHHHCGGGGTCEEEEEESCHHHHHHHHHHHHHHTTCCBTT
T ss_pred CChHHHHHHHHHHHhCCC--eEEEECCCCCCHHHHHHHHHHHhccccCCCceEEecCchHHHHHHHHHHHHHHhCCchhh
Confidence 456678888888887652 79999999999999543333221 3459999999999999999888876554332
Q ss_pred EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCC-CCc-h----HHHHHHHhcccc
Q 010367 99 ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHV-VPA-H----MFRKVISLTKSH 172 (512)
Q Consensus 99 v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~-~~~-~----~~~~~l~~~~~~ 172 (512)
..-+.............|+++|++++... +.......++++||+||+|. ... . .+..+....+..
T Consensus 171 ~vG~~i~~~~~~~~~~~I~v~T~G~l~r~---------l~~~~~l~~~~~lIlDEah~R~ld~d~~~~~l~~l~~~~~~~ 241 (773)
T 2xau_A 171 EVGYSIRFENKTSNKTILKYMTDGMLLRE---------AMEDHDLSRYSCIILDEAHERTLATDILMGLLKQVVKRRPDL 241 (773)
T ss_dssp TEEEEETTEEECCTTCSEEEEEHHHHHHH---------HHHSTTCTTEEEEEECSGGGCCHHHHHHHHHHHHHHHHCTTC
T ss_pred eecceeccccccCCCCCEEEECHHHHHHH---------HhhCccccCCCEEEecCccccccchHHHHHHHHHHHHhCCCc
Confidence 22222122222345688999999988642 11212236789999999996 333 2 223333333456
Q ss_pred eEEEEcccCCCCcchHhhhHhhhC-CceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcc
Q 010367 173 CKLGLTATLVREDERITDLNFLIG-PKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPN 251 (512)
Q Consensus 173 ~~l~LTATp~~~~~~~~~l~~l~g-p~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~ 251 (512)
.+++||||+.. . .+..+++ +.+... .+...++.......+.. .+.
T Consensus 242 ~iIl~SAT~~~--~---~l~~~~~~~~vi~v-------~gr~~pv~~~~~~~~~~-----~~~----------------- 287 (773)
T 2xau_A 242 KIIIMSATLDA--E---KFQRYFNDAPLLAV-------PGRTYPVELYYTPEFQR-----DYL----------------- 287 (773)
T ss_dssp EEEEEESCSCC--H---HHHHHTTSCCEEEC-------CCCCCCEEEECCSSCCS-----CHH-----------------
T ss_pred eEEEEeccccH--H---HHHHHhcCCCcccc-------cCcccceEEEEecCCch-----hHH-----------------
Confidence 78999999942 2 2333343 222221 12222332221111110 000
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC----------------CCceeCCCCHHHHHHHHHHhh-----
Q 010367 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----------------KPMIYGATSHVERTKILQAFK----- 310 (512)
Q Consensus 252 k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~----------------~~~i~g~~~~~eR~~il~~F~----- 310 (512)
..++..++..+....+.++||||+++..++.++..|. +..+||++++.+|.++++.|.
T Consensus 288 -~~~l~~l~~~~~~~~~g~iLVF~~~~~~i~~l~~~L~~~~~~l~~~~~~~~~~v~~lhg~l~~~eR~~v~~~f~~~~~~ 366 (773)
T 2xau_A 288 -DSAIRTVLQIHATEEAGDILLFLTGEDEIEDAVRKISLEGDQLVREEGCGPLSVYPLYGSLPPHQQQRIFEPAPESHNG 366 (773)
T ss_dssp -HHHHHHHHHHHHHSCSCEEEEECSCHHHHHHHHHHHHHHHHHHHHHHCCCCEEEEEECTTCCHHHHGGGGSCCCCCSSS
T ss_pred -HHHHHHHHHHHHhcCCCCEEEECCCHHHHHHHHHHHHHHHHhhcccccCCCeEEEEeCCCCCHHHHHHHHhhcccccCC
Confidence 1223334444432357799999999999999888773 345899999999999999999
Q ss_pred CCCCccEEEEeCCCcccccCccccEEEEecC------------------CCCCHHHHHHHhhcccccC
Q 010367 311 CSRDLNTIFLSKVGDNSIDIPEANVIIQISS------------------HAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 311 ~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~------------------~~~s~~~~~Q~~GR~~R~g 360 (512)
.+ ..+|||+|+++++|||+|++++||.++. |. |...|.||+||+||.+
T Consensus 367 ~g-~~kVlVAT~iae~GidIp~v~~VId~g~~k~~~yd~~~g~~~L~~~p~-S~~s~~QR~GRaGR~~ 432 (773)
T 2xau_A 367 RP-GRKVVISTNIAETSLTIDGIVYVVDPGFSKQKVYNPRIRVESLLVSPI-SKASAQQRAGRAGRTR 432 (773)
T ss_dssp SC-CEEEEEECTHHHHTCCCTTEEEEEECSEEEEEEEETTTTEEEEEEEEC-CHHHHHHHHHGGGSSS
T ss_pred CC-ceEEEEeCcHHHhCcCcCCeEEEEeCCCccceeeccccCccccccccC-CHHHHHhhccccCCCC
Confidence 76 8999999999999999999999998533 44 9999999999999985
No 51
>2whx_A Serine protease/ntpase/helicase NS3; transcription, hydrolase, ATP-binding, reticulum, nucleotidyltransferase, multifunctional enzyme; HET: ADP; 2.20A {Dengue virus 4} PDB: 2vbc_A 2wzq_A
Probab=99.95 E-value=3.6e-27 Score=253.91 Aligned_cols=260 Identities=16% Similarity=0.145 Sum_probs=170.9
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH----hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC----RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~----~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
..|.|..+++.+..+. +.++.+|||+|||++++..+. ..+.++||++|+++|+.|+.+.|... .+.
T Consensus 172 ~lpiq~~~i~~l~~g~---dvlv~a~TGSGKT~~~~lpil~~l~~~~~~vLvl~PtreLa~Qi~~~l~~~------~v~- 241 (618)
T 2whx_A 172 GEPDYEVDEDIFRKKR---LTIMDLHPGAGKTKRILPSIVREALKRRLRTLILAPTRVVAAEMEEALRGL------PIR- 241 (618)
T ss_dssp CCCCCCCCGGGGSTTC---EEEECCCTTSSTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTTS------CEE-
T ss_pred CCCccccCHHHHhcCC---eEEEEcCCCCCHHHHHHHHHHHHHHhCCCeEEEEcChHHHHHHHHHHhcCC------cee-
Confidence 3444444555544443 999999999999999754443 23568999999999999999888632 233
Q ss_pred EcCCc-cccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHHHHHHhc--ccceEE
Q 010367 102 FTSDS-KERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLT--KSHCKL 175 (512)
Q Consensus 102 ~~~~~-~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~~~l~~~--~~~~~l 175 (512)
+.... .........+.++|.+.+... +.......++++||+||||++... ....++..+ ...+++
T Consensus 242 ~~~~~l~~~~tp~~~i~~~t~~~l~~~---------l~~~~~l~~~~~iViDEah~~~~~~~~~~~~i~~~l~~~~~q~i 312 (618)
T 2whx_A 242 YQTPAVKSDHTGREIVDLMCHATFTTR---------LLSSTRVPNYNLIVMDEAHFTDPCSVAARGYISTRVEMGEAAAI 312 (618)
T ss_dssp ECCTTSSCCCCSSSCEEEEEHHHHHHH---------HHHCSSCCCCSEEEEESTTCCSHHHHHHHHHHHHHHHHTSCEEE
T ss_pred EecccceeccCCCceEEEEChHHHHHH---------HhccccccCCeEEEEECCCCCCccHHHHHHHHHHHhcccCccEE
Confidence 33332 111233455777777766431 122212367899999999998322 223333333 346789
Q ss_pred EEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHH
Q 010367 176 GLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRA 255 (512)
Q Consensus 176 ~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~ 255 (512)
+|||||......... ..+.. ..+......+ ....+
T Consensus 313 l~SAT~~~~~~~~~~----~~~~~-------------------~~v~~~~~~~----------------------~~~~l 347 (618)
T 2whx_A 313 FMTATPPGSTDPFPQ----SNSPI-------------------EDIEREIPER----------------------SWNTG 347 (618)
T ss_dssp EECSSCTTCCCSSCC----CSSCE-------------------EEEECCCCSS----------------------CCSSS
T ss_pred EEECCCchhhhhhhc----cCCce-------------------eeecccCCHH----------------------HHHHH
Confidence 999999754322100 01111 1111110000 00011
Q ss_pred HHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccC
Q 010367 256 CEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDI 330 (512)
Q Consensus 256 l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDl 330 (512)
+..+. ..+.++||||+++..++.+++.| ++..+||+ +|.++++.|+++ +.+|||+|+++++|||+
T Consensus 348 l~~l~-----~~~~~~LVF~~s~~~a~~l~~~L~~~g~~v~~lhg~----~R~~~l~~F~~g-~~~VLVaTdv~~rGiDi 417 (618)
T 2whx_A 348 FDWIT-----DYQGKTVWFVPSIKAGNDIANCLRKSGKRVIQLSRK----TFDTEYPKTKLT-DWDFVVTTDISEMGANF 417 (618)
T ss_dssp CHHHH-----HCCSCEEEECSSHHHHHHHHHHHHHTTCCEEEECTT----THHHHTTHHHHS-CCSEEEECGGGGTTCCC
T ss_pred HHHHH-----hCCCCEEEEECChhHHHHHHHHHHHcCCcEEEEChH----HHHHHHHhhcCC-CcEEEEECcHHHcCccc
Confidence 12222 23569999999999999999998 34468874 788899999997 99999999999999999
Q ss_pred ccccEE--------------------EEecCCCCCHHHHHHHhhcccccCC
Q 010367 331 PEANVI--------------------IQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 331 p~~~~v--------------------I~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
| +++| |+++.|. |..+|+||+||+||.|.
T Consensus 418 ~-v~~VId~g~~~~P~~~~~~~~~~~i~~d~P~-s~~~yiQR~GRaGR~g~ 466 (618)
T 2whx_A 418 R-AGRVIDPRRCLKPVILTDGPERVILAGPIPV-TPASAAQRRGRIGRNPA 466 (618)
T ss_dssp C-CSEEEECCEEEEEEEECSSSCEEEEEEEEEC-CHHHHHHHHTTSSCCTT
T ss_pred C-ceEEEECcceecceecccCCCceEEcccccC-CHHHHHHhccccCCCCC
Confidence 8 8887 5555555 99999999999999973
No 52
>2wv9_A Flavivirin protease NS2B regulatory subunit, FLAV protease NS3 catalytic subunit; nucleotide-binding, capsid protein; 2.75A {Murray valley encephalitis virus}
Probab=99.94 E-value=1.5e-27 Score=258.49 Aligned_cols=262 Identities=16% Similarity=0.172 Sum_probs=164.9
Q ss_pred CCcHHHH-----HHHHHHH-----hCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHH
Q 010367 25 QPRPYQE-----KSLSKMF-----GNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 25 ~Lr~yQ~-----~al~~~~-----~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
.++|.|. +++..++ ..+ ++.++.+|||+|||++++.++.. .+.++||++|+++|+.|+.+.|..
T Consensus 215 ~pt~IQ~~~r~~~aIp~~l~~~~l~~g--~dvlv~apTGSGKTl~~ll~il~~l~~~~~~~lilaPTr~La~Q~~~~l~~ 292 (673)
T 2wv9_A 215 YVSAIVQGERVEEPVPEAYNPEMLKKR--QLTVLDLHPGAGKTRRILPQIIKDAIQKRLRTAVLAPTRVVAAEMAEALRG 292 (673)
T ss_dssp EEEEEECC-------CCCCCGGGGSTT--CEEEECCCTTTTTTTTHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHTTT
T ss_pred ccCceeeccccccchHHHhhHHHHhcC--CeEEEEeCCCCCHHHHHHHHHHHHHHhCCCcEEEEccHHHHHHHHHHHHhc
Confidence 5677787 8887665 122 49999999999999997555532 246899999999999999998876
Q ss_pred hhCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHHHHHH
Q 010367 91 WSTIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVIS 167 (512)
Q Consensus 91 ~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~~~l~ 167 (512)
+ + +....+..........-+.+.+...+. ..++......++++||+||||++... ....+..
T Consensus 293 ~-~-----i~~~~~~l~~v~tp~~ll~~l~~~~l~---------~~l~~~~~l~~l~lvViDEaH~~~~~~~~~~~~l~~ 357 (673)
T 2wv9_A 293 L-P-----VRYLTPAVQREHSGNEIVDVMCHATLT---------HRLMSPLRVPNYNLFVMDEAHFTDPASIAARGYIAT 357 (673)
T ss_dssp S-C-----CEECCC---CCCCSCCCEEEEEHHHHH---------HHHHSSSCCCCCSEEEEESTTCCCHHHHHHHHHHHH
T ss_pred C-C-----eeeecccccccCCHHHHHHHHHhhhhH---------HHHhcccccccceEEEEeCCcccCccHHHHHHHHHH
Confidence 4 1 221111111000111222333333221 11111112367899999999999321 1111222
Q ss_pred hc--ccceEEEEcccCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHH
Q 010367 168 LT--KSHCKLGLTATLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQAL 245 (512)
Q Consensus 168 ~~--~~~~~l~LTATp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 245 (512)
.+ ...++|+|||||....... ... -.+ ...+......
T Consensus 358 ~~~~~~~~vl~~SAT~~~~i~~~------~~~---------------~~~--i~~v~~~~~~------------------ 396 (673)
T 2wv9_A 358 RVEAGEAAAIFMTATPPGTSDPF------PDT---------------NSP--VHDVSSEIPD------------------ 396 (673)
T ss_dssp HHHTTSCEEEEECSSCTTCCCSS------CCC---------------SSC--EEEEECCCCS------------------
T ss_pred hccccCCcEEEEcCCCChhhhhh------ccc---------------CCc--eEEEeeecCH------------------
Confidence 22 3568899999997542210 000 001 1111111100
Q ss_pred hhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEE
Q 010367 246 YVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFL 320 (512)
Q Consensus 246 ~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~ 320 (512)
..+...+..+. ..+.++||||+++..++.+++.|. +..+||+ +|.++++.|+++ +++|||+
T Consensus 397 ----~~~~~~l~~l~-----~~~~~~lVF~~s~~~~e~la~~L~~~g~~v~~lHg~----eR~~v~~~F~~g-~~~VLVa 462 (673)
T 2wv9_A 397 ----RAWSSGFEWIT-----DYAGKTVWFVASVKMSNEIAQCLQRAGKRVIQLNRK----SYDTEYPKCKNG-DWDFVIT 462 (673)
T ss_dssp ----SCCSSCCHHHH-----SCCSCEEEECSSHHHHHHHHHHHHTTTCCEEEECSS----SHHHHGGGGGTC-CCSEEEE
T ss_pred ----HHHHHHHHHHH-----hCCCCEEEEECCHHHHHHHHHHHHhCCCeEEEeChH----HHHHHHHHHHCC-CceEEEE
Confidence 00001112222 347799999999999999999993 4468883 789999999998 9999999
Q ss_pred eCCCcccccCccccEEEE--------------------ecCCCCCHHHHHHHhhcccccC
Q 010367 321 SKVGDNSIDIPEANVIIQ--------------------ISSHAGSRRQEAQRLGRILRAK 360 (512)
Q Consensus 321 t~~~~~GlDlp~~~~vI~--------------------~~~~~~s~~~~~Q~~GR~~R~g 360 (512)
|+++++|||+| +++||+ ++.|. +..+|+||+||+||.+
T Consensus 463 Tdv~e~GIDip-v~~VI~~g~~~~p~vi~da~~r~~ll~d~P~-s~~~y~Qr~GRaGR~~ 520 (673)
T 2wv9_A 463 TDISEMGANFG-ASRVIDCRKSVKPTILDEGEGRVILSVPSAI-TSASAAQRRGRVGRNP 520 (673)
T ss_dssp CGGGGTTCCCC-CSEEEECCEECCEEEECSTTCEEEECCSEEC-CHHHHHHHHTTSSCCS
T ss_pred CchhhcceeeC-CcEEEECCCcccceeeecccccceecccCCC-CHHHHHHHhhccCCCC
Confidence 99999999999 999986 33444 8899999999999984
No 53
>3o8b_A HCV NS3 protease/helicase; ntpase, RNA, translocation, protein-RNA compl protease/ntpase/helicase, hydrolase; 1.95A {Hepatitis c virus} PDB: 3o8c_A* 3o8d_A* 3o8r_A* 4b71_A* 4b73_A* 4b74_A* 4b76_A* 4b75_A* 4a92_A* 1cu1_A 4b6e_A* 4b6f_A* 2zjo_A* 1a1v_A* 1hei_A 3kqn_A* 3kql_A* 3kqu_A* 3kqh_A 3kqk_A ...
Probab=99.94 E-value=3.8e-27 Score=251.95 Aligned_cols=255 Identities=16% Similarity=0.091 Sum_probs=173.7
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~ 105 (512)
++++|++.+..+.++ ++.++.+|||+|||.++..++...+.++||++|+++|+.|+.+.+.+.++.. +....++
T Consensus 218 ~~~~q~~i~~~L~~~---~~vlv~ApTGSGKT~a~~l~ll~~g~~vLVl~PTReLA~Qia~~l~~~~g~~---vg~~vG~ 291 (666)
T 3o8b_A 218 VFTDNSSPPAVPQSF---QVAHLHAPTGSGKSTKVPAAYAAQGYKVLVLNPSVAATLGFGAYMSKAHGID---PNIRTGV 291 (666)
T ss_dssp SCCCCCSCCCCCSSC---EEEEEECCTTSCTTTHHHHHHHHTTCCEEEEESCHHHHHHHHHHHHHHHSCC---CEEECSS
T ss_pred cHHHHHHHHHHHHcC---CeEEEEeCCchhHHHHHHHHHHHCCCeEEEEcchHHHHHHHHHHHHHHhCCC---eeEEECc
Confidence 344444444433332 4889999999999999988888777799999999999999999998877653 4555555
Q ss_pred ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---HHHHHHHhcccc---eEEEEcc
Q 010367 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH---MFRKVISLTKSH---CKLGLTA 179 (512)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~---~~~~~l~~~~~~---~~l~LTA 179 (512)
.. .....+|+|+|++.|.... .+...++++||+||||.+... .+..++..++.. ..+++||
T Consensus 292 ~~--~~~~~~IlV~TPGrLl~~~-----------~l~l~~l~~lVlDEAH~l~~~~~~~l~~Il~~l~~~~~~llil~SA 358 (666)
T 3o8b_A 292 RT--ITTGAPVTYSTYGKFLADG-----------GCSGGAYDIIICDECHSTDSTTILGIGTVLDQAETAGARLVVLATA 358 (666)
T ss_dssp CE--ECCCCSEEEEEHHHHHHTT-----------SCCTTSCSEEEETTTTCCSHHHHHHHHHHHHHTTTTTCSEEEEEES
T ss_pred Ee--ccCCCCEEEECcHHHHhCC-----------CcccCcccEEEEccchhcCccHHHHHHHHHHhhhhcCCceEEEECC
Confidence 43 3556899999999885321 122357899999999887644 244455555432 3688899
Q ss_pred cCCCCcchHhhhHhhhCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHH
Q 010367 180 TLVREDERITDLNFLIGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFL 259 (512)
Q Consensus 180 Tp~~~~~~~~~l~~l~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~l 259 (512)
||...... ..|....... .+....... . ... .
T Consensus 359 T~~~~i~~-------~~p~i~~v~~------~~~~~i~~~-----------~----~~~---------------~----- 390 (666)
T 3o8b_A 359 TPPGSVTV-------PHPNIEEVAL------SNTGEIPFY-----------G----KAI---------------P----- 390 (666)
T ss_dssp SCTTCCCC-------CCTTEEEEEC------BSCSSEEET-----------T----EEE---------------C-----
T ss_pred CCCccccc-------CCcceEEEee------cccchhHHH-----------H----hhh---------------h-----
Confidence 99753110 0111111000 000000000 0 000 0
Q ss_pred HHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCcccc
Q 010367 260 IRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEAN 334 (512)
Q Consensus 260 l~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~ 334 (512)
+. . ..+.++||||++++.++.+++.|. +..+||++++.+ |.++ ..+|||+|+++++|||+| ++
T Consensus 391 l~--~-~~~~~vLVFv~Tr~~ae~la~~L~~~g~~v~~lHG~l~q~e-------r~~~-~~~VLVATdVaerGIDId-V~ 458 (666)
T 3o8b_A 391 IE--A-IRGGRHLIFCHSKKKCDELAAKLSGLGINAVAYYRGLDVSV-------IPTI-GDVVVVATDALMTGYTGD-FD 458 (666)
T ss_dssp GG--G-SSSSEEEEECSCHHHHHHHHHHHHTTTCCEEEECTTSCGGG-------SCSS-SCEEEEECTTHHHHCCCC-BS
T ss_pred hh--h-ccCCcEEEEeCCHHHHHHHHHHHHhCCCcEEEecCCCCHHH-------HHhC-CCcEEEECChHHccCCCC-Cc
Confidence 00 1 247799999999999999999983 346999999765 4454 559999999999999998 99
Q ss_pred EEEE----------ec-----------CCCCCHHHHHHHhhcccccCC
Q 010367 335 VIIQ----------IS-----------SHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 335 ~vI~----------~~-----------~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+||+ ++ .|. |..+|+||+||+|| +.
T Consensus 459 ~VI~~Gl~~~~ViNyDydP~~gl~~~~~P~-s~~syiQRiGRtGR-g~ 504 (666)
T 3o8b_A 459 SVIDCNTCVTQTVDFSLDPTFTIETTTVPQ-DAVSRSQRRGRTGR-GR 504 (666)
T ss_dssp EEEECCEEEEEEEECCCSSSCEEEEEEEEC-BHHHHHHHHTTBCS-SS
T ss_pred EEEecCcccccccccccccccccccccCcC-CHHHHHHHhccCCC-CC
Confidence 9884 43 344 89999999999999 63
No 54
>1tf5_A Preprotein translocase SECA subunit; ATPase, helicase, translocation, secretion, protein transport; 2.18A {Bacillus subtilis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1tf2_A 3iqy_A 1m6n_A 1m74_A* 3iqm_A 3jv2_A* 2ibm_A* 3dl8_A 1sx0_A 1sx1_A 1tm6_A
Probab=99.94 E-value=3.5e-25 Score=238.92 Aligned_cols=324 Identities=16% Similarity=0.119 Sum_probs=193.1
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-h--cCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-R--IKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~--~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.+.++|.|..++..++.+ . |..++||+|||+++..++. . .+..++||+|++.|+.|..+++..+.......+
T Consensus 81 G~~pt~VQ~~~ip~ll~G----~-Iaea~TGeGKTlaf~LP~~l~aL~g~~vlVltptreLA~qd~e~~~~l~~~lgl~v 155 (844)
T 1tf5_A 81 GMFPFKVQLMGGVALHDG----N-IAEMKTGEGKTLTSTLPVYLNALTGKGVHVVTVNEYLASRDAEQMGKIFEFLGLTV 155 (844)
T ss_dssp SCCCCHHHHHHHHHHHTT----S-EEECCTTSCHHHHHHHHHHHHHTTSSCEEEEESSHHHHHHHHHHHHHHHHHTTCCE
T ss_pred CCCCcHHHHHhhHHHhCC----C-EEEccCCcHHHHHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHHHHhhcCCeE
Confidence 358899999999987764 2 9999999999999887775 2 256899999999999986666655543334467
Q ss_pred EEEcCCcccc---ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC-ch---------------
Q 010367 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AH--------------- 160 (512)
Q Consensus 100 ~~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~-~~--------------- 160 (512)
+.+.|+.... ....++|+|+|++.|....-+.+.. .....+..+.+.++|+||||++. ..
T Consensus 156 ~~i~gg~~~~~r~~~~~~dIv~gTpgrlgfD~L~D~m~-~~~~~l~lr~~~~lVlDEaD~mLiDea~tplIisg~~~~~~ 234 (844)
T 1tf5_A 156 GLNLNSMSKDEKREAYAADITYSTNNELGFDYLRDNMV-LYKEQMVQRPLHFAVIDEVDSILIDEARTPLIISGQAAKST 234 (844)
T ss_dssp EECCTTSCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCCCCEEEEETHHHHHTTTTTCEEEEEEEEECCC
T ss_pred EEEeCCCCHHHHHHhcCCCEEEECchhhhHHHHHHhhh-cchhhhcccCCCEEEECchhhhhhhccccchhhcCCcccch
Confidence 7777764321 1235899999999883210000000 00011223677899999999975 21
Q ss_pred ----HHHHHHHhcc----------cceEE-----------------EEcccCCCCcchHhh-h--Hhh------------
Q 010367 161 ----MFRKVISLTK----------SHCKL-----------------GLTATLVREDERITD-L--NFL------------ 194 (512)
Q Consensus 161 ----~~~~~l~~~~----------~~~~l-----------------~LTATp~~~~~~~~~-l--~~l------------ 194 (512)
....++..++ .+.++ ++|||.......+.. + ..+
T Consensus 235 ~~~~~i~~iv~~l~~~~~y~vd~k~rq~~lt~~g~~~~e~~~~i~~Lfsat~~~~~~~i~~al~A~~l~~~d~dYiv~dg 314 (844)
T 1tf5_A 235 KLYVQANAFVRTLKAEKDYTYDIKTKAVQLTEEGMTKAEKAFGIDNLFDVKHVALNHHINQALKAHVAMQKDVDYVVEDG 314 (844)
T ss_dssp HHHHHHHHHHTTCCSSSSBCCCSSSCCCCBCHHHHHHHHHHTTCSCTTSGGGHHHHHHHHHHHHHHHTCCBTTTEEEETT
T ss_pred hHHHHHHHHHHhCcccccceeccccceEEecHHHHHHHHHHhCccccCCCccchhHHHHHHHHHHHHHhhcCCceEEecC
Confidence 2345555554 22333 667773210000000 0 000
Q ss_pred --------hCCc----------------------------eeeecHHHHHhCCCcccceeEEEEcCC---CHHHHHHHHH
Q 010367 195 --------IGPK----------------------------LYEANWLDLVKGGFIANVQCAEVWCPM---TKEFFSEYLK 235 (512)
Q Consensus 195 --------~gp~----------------------------~~~~~~~~l~~~~~l~~~~~~~~~~~~---~~~~~~~~l~ 235 (512)
.|.. +-......++.. | + ......-.. ..++..-|--
T Consensus 315 ~v~ivDe~tgr~m~grr~sdGLhqaieake~v~I~~e~~t~a~It~q~~fr~-y--~-kl~GmTGTa~te~~e~~~iY~l 390 (844)
T 1tf5_A 315 QVVIVDSFTGRLMKGRRYSEGLHQAIEAKEGLEIQNESMTLATITFQNYFRM-Y--E-KLAGMTGTAKTEEEEFRNIYNM 390 (844)
T ss_dssp EEEEBCTTTCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEEEEEEEHHHHHTT-S--S-EEEEEESCCGGGHHHHHHHHCC
T ss_pred eeEEeecccccccCCCccchhhHHHHhhcccceecccccccceeeHHHHHHH-H--h-hhccCCcccchhHHHHHHHhCC
Confidence 0000 000011111100 0 0 000000000 0011111100
Q ss_pred ------hhchHH----HHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHH
Q 010367 236 ------KENSKK----KQALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHV 300 (512)
Q Consensus 236 ------~~~~~~----~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~ 300 (512)
...... ...++.....|+.++..++.... ..+.++||||+++..++.++..|. ..++||+..+.
T Consensus 391 ~vv~IPtn~p~~r~d~~d~v~~~~~~K~~al~~~i~~~~-~~~~pvLVft~s~~~se~Ls~~L~~~gi~~~vLhg~~~~r 469 (844)
T 1tf5_A 391 QVVTIPTNRPVVRDDRPDLIYRTMEGKFKAVAEDVAQRY-MTGQPVLVGTVAVETSELISKLLKNKGIPHQVLNAKNHER 469 (844)
T ss_dssp CEEECCCSSCCCCEECCCEEESSHHHHHHHHHHHHHHHH-HHTCCEEEEESCHHHHHHHHHHHHTTTCCCEEECSSCHHH
T ss_pred ceEEecCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCccHH
Confidence 000000 00111122346666666664321 247789999999999999999993 34699999888
Q ss_pred HHHHHHHHhhCCCCccEEEEeCCCcccccCc--------cccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 301 ERTKILQAFKCSRDLNTIFLSKVGDNSIDIP--------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 301 eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp--------~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|..+.+.|+.+ .|+|+|+++++|+|++ +..+||.++.|. |++.|.||+||+||.|.
T Consensus 470 Er~ii~~ag~~g---~VlIATdmAgRG~DI~l~~~V~~~ggl~VIn~d~p~-s~r~y~hr~GRTGRqG~ 534 (844)
T 1tf5_A 470 EAQIIEEAGQKG---AVTIATNMAGRGTDIKLGEGVKELGGLAVVGTERHE-SRRIDNQLRGRSGRQGD 534 (844)
T ss_dssp HHHHHTTTTSTT---CEEEEETTSSTTCCCCCCTTSGGGTSEEEEESSCCS-SHHHHHHHHTTSSGGGC
T ss_pred HHHHHHHcCCCC---eEEEeCCccccCcCccccchhhhcCCcEEEEecCCC-CHHHHHhhcCccccCCC
Confidence 887666666554 6999999999999999 788999998887 99999999999999885
No 55
>3rc3_A ATP-dependent RNA helicase SUPV3L1, mitochondrial; SUV3, nucleus, hydrolase; HET: ANP; 2.08A {Homo sapiens} PDB: 3rc8_A
Probab=99.93 E-value=4.9e-25 Score=238.23 Aligned_cols=246 Identities=12% Similarity=0.104 Sum_probs=174.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccccc---CCCeEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFR---GNAGVVVTT 120 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~---~~~~Ivv~T 120 (512)
+..++++|||+|||+.++..+... +..+|++|+++|+.|+.+.+... ++ .+..++|+...... ...+++++|
T Consensus 156 k~vlv~apTGSGKT~~al~~l~~~-~~gl~l~PtR~LA~Qi~~~l~~~-g~---~v~lltG~~~~iv~TpGr~~~il~~T 230 (677)
T 3rc3_A 156 KIIFHSGPTNSGKTYHAIQKYFSA-KSGVYCGPLKLLAHEIFEKSNAA-GV---PCDLVTGEERVTVQPNGKQASHVSCT 230 (677)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHS-SSEEEEESSHHHHHHHHHHHHHT-TC---CEEEECSSCEECCSTTCCCCSEEEEE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHhc-CCeEEEeCHHHHHHHHHHHHHhc-CC---cEEEEECCeeEEecCCCcccceeEec
Confidence 478999999999999777666655 45699999999999999999885 33 57888887654321 236789999
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhcc--cceEEEEcccCCCCcchHhhhHhh
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLTK--SHCKLGLTATLVREDERITDLNFL 194 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~~--~~~~l~LTATp~~~~~~~~~l~~l 194 (512)
++++.. ...++++|+||||++.+. .+..++..+. ..+.+++|||.. ....+...
T Consensus 231 ~e~~~l----------------~~~v~lvVIDEaH~l~d~~~g~~~~~~l~~l~~~~i~il~~SAT~~----~i~~l~~~ 290 (677)
T 3rc3_A 231 VEMCSV----------------TTPYEVAVIDEIQMIRDPARGWAWTRALLGLCAEEVHLCGEPAAID----LVMELMYT 290 (677)
T ss_dssp GGGCCS----------------SSCEEEEEECSGGGGGCTTTHHHHHHHHHHCCEEEEEEEECGGGHH----HHHHHHHH
T ss_pred HhHhhh----------------cccCCEEEEecceecCCccchHHHHHHHHccCccceEEEeccchHH----HHHHHHHh
Confidence 877642 157799999999998654 4455555554 236788899941 12222222
Q ss_pred hCCceeeecHHHHHhCCCcccceeEEEEcCCCHHHHHHHHHhhchHHHHHHhhcCcchHHHHHHHHHHhhhcCCCeEEEE
Q 010367 195 IGPKLYEANWLDLVKGGFIANVQCAEVWCPMTKEFFSEYLKKENSKKKQALYVMNPNKFRACEFLIRFHEQQRGDKIIVF 274 (512)
Q Consensus 195 ~gp~~~~~~~~~l~~~~~l~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf 274 (512)
.+....-... ....+... .... +.. + . ......|||
T Consensus 291 ~~~~~~v~~~------~r~~~l~~--~~~~-------------------------------l~~-l---~-~~~~g~iIf 326 (677)
T 3rc3_A 291 TGEEVEVRDY------KRLTPISV--LDHA-------------------------------LES-L---D-NLRPGDCIV 326 (677)
T ss_dssp HTCCEEEEEC------CCSSCEEE--CSSC-------------------------------CCS-G---G-GCCTTEEEE
T ss_pred cCCceEEEEe------eecchHHH--HHHH-------------------------------HHH-H---H-hcCCCCEEE
Confidence 2222110000 00000000 0000 000 0 0 112234788
Q ss_pred ecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhC--CCCccEEEEeCCCcccccCccccEEEEecC------
Q 010367 275 ADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKC--SRDLNTIFLSKVGDNSIDIPEANVIIQISS------ 341 (512)
Q Consensus 275 ~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~--~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~------ 341 (512)
|.++..++.+++.| ++..+||++++.+|.++++.|+. + .++|||+|+++++|||+ .+++||+++.
T Consensus 327 ~~s~~~ie~la~~L~~~g~~v~~lHG~L~~~~R~~~~~~F~~~~g-~~~VLVATdi~e~GlDi-~v~~VI~~~~~k~~~~ 404 (677)
T 3rc3_A 327 CFSKNDIYSVSRQIEIRGLESAVIYGSLPPGTKLAQAKKFNDPND-PCKILVATDAIGMGLNL-SIRRIIFYSLIKPSIN 404 (677)
T ss_dssp CSSHHHHHHHHHHHHHTTCCCEEECTTSCHHHHHHHHHHHHCTTS-SCCEEEECGGGGSSCCC-CBSEEEESCSBC----
T ss_pred EcCHHHHHHHHHHHHhcCCCeeeeeccCCHHHHHHHHHHHHccCC-CeEEEEeCcHHHCCcCc-CccEEEECCccccccc
Confidence 99999999999988 46689999999999999999998 5 79999999999999999 7999999866
Q ss_pred --------CCCCHHHHHHHhhcccccCC
Q 010367 342 --------HAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 342 --------~~~s~~~~~Q~~GR~~R~g~ 361 (512)
|. |..+|.||+||+||.|.
T Consensus 405 ~~G~~~~~p~-s~~~~~QR~GRAGR~g~ 431 (677)
T 3rc3_A 405 EKGERELEPI-TTSQALQIAGRAGRFSS 431 (677)
T ss_dssp -------CBC-CHHHHHHHHTTBTCTTS
T ss_pred cCCccccccC-CHHHHHHHhcCCCCCCC
Confidence 43 89999999999999995
No 56
>2fsf_A Preprotein translocase SECA subunit; ATPase, DNA-RNA helicase, protein translocation, protein transport; 2.00A {Escherichia coli} PDB: 2fsg_A* 2fsh_A* 2fsi_A* 2vda_A 3bxz_A*
Probab=99.93 E-value=2.7e-25 Score=239.23 Aligned_cols=107 Identities=20% Similarity=0.123 Sum_probs=90.7
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..|+.++..++.... ..|.++||||.++..++.++..| + ..++||+..+.+|..+.+.|+.+ .|+|+|+++
T Consensus 424 ~~K~~al~~~i~~~~-~~gqpvLVft~sie~se~Ls~~L~~~gi~~~vLnak~~~rEa~iia~agr~G---~VtIATnmA 499 (853)
T 2fsf_A 424 AEKIQAIIEDIKERT-AKGQPVLVGTISIEKSELVSNELTKAGIKHNVLNAKFHANEAAIVAQAGYPA---AVTIATNMA 499 (853)
T ss_dssp HHHHHHHHHHHHHHH-TTTCCEEEEESSHHHHHHHHHHHHHTTCCCEECCTTCHHHHHHHHHTTTSTT---CEEEEESCC
T ss_pred HHHHHHHHHHHHHHh-cCCCCEEEEECcHHHHHHHHHHHHHCCCCEEEecCChhHHHHHHHHhcCCCC---eEEEecccc
Confidence 457777777775432 46789999999999999999999 3 34799998888888888888886 699999999
Q ss_pred cccccCccc-------------------------------------cEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEA-------------------------------------NVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~-------------------------------------~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|++.. .+||.++.|. |++.|.|++||+||.|.
T Consensus 500 gRGtDI~l~gn~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~GGl~VI~te~pe-s~riy~qr~GRTGRqGd 572 (853)
T 2fsf_A 500 GRGTDIVLGGSWQAEVAALENPTAEQIEKIKADWQVRHDAVLEAGGLHIIGTERHE-SRRIDNQLRGRSGRQGD 572 (853)
T ss_dssp SSCSCCCTTCCHHHHHHHCSSCCSSHHHHHHHHHHHHHHHHHHTTSEEEEESSCCS-SHHHHHHHHTTSSGGGC
T ss_pred cCCcCccCCCchHhhhhhcccchhHHHHHHHHHhhhhhhHHHhcCCcEEEEccCCC-CHHHHHhhccccccCCC
Confidence 999999973 5899998887 99999999999999884
No 57
>2fz4_A DNA repair protein RAD25; RECA-like domain, DNA damage recognition domain, DNA binding; HET: DNA; 2.40A {Archaeoglobus fulgidus} SCOP: c.37.1.19
Probab=99.92 E-value=1.9e-24 Score=205.99 Aligned_cols=155 Identities=28% Similarity=0.476 Sum_probs=126.6
Q ss_pred CCCCcc-CCCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 13 NPDLNM-ELKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 13 ~~~~~~-~l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.+..++ .+.+.++|+|||.+++..++.++ ++++++|||+|||++++.++...++++||+||+++|+.||.+++.+|
T Consensus 80 ~~~~~~p~~~~~~~l~~~Q~~ai~~~~~~~---~~ll~~~tG~GKT~~a~~~~~~~~~~~liv~P~~~L~~q~~~~~~~~ 156 (237)
T 2fz4_A 80 ADPIPTPYFDAEISLRDYQEKALERWLVDK---RGCIVLPTGSGKTHVAMAAINELSTPTLIVVPTLALAEQWKERLGIF 156 (237)
T ss_dssp CCCCCCCCCCCCCCCCHHHHHHHHHHTTTS---EEEEEESSSTTHHHHHHHHHHHSCSCEEEEESSHHHHHHHHHHHGGG
T ss_pred cccCCCccccCCCCcCHHHHHHHHHHHhCC---CEEEEeCCCCCHHHHHHHHHHHcCCCEEEEeCCHHHHHHHHHHHHhC
Confidence 334455 66778899999999999988765 69999999999999999999999999999999999999999999994
Q ss_pred hCCCCCcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhccc
Q 010367 92 STIQDDQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKS 171 (512)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~ 171 (512)
++ ..+..++++.+. ..+|+|+||+.+... ...+ ...|++||+||||++.+..+..++..++.
T Consensus 157 -~~--~~v~~~~g~~~~----~~~i~v~T~~~l~~~----------~~~~-~~~~~llIiDEaH~l~~~~~~~i~~~~~~ 218 (237)
T 2fz4_A 157 -GE--EYVGEFSGRIKE----LKPLTVSTYDSAYVN----------AEKL-GNRFMLLIFDEVHHLPAESYVQIAQMSIA 218 (237)
T ss_dssp -CG--GGEEEESSSCBC----CCSEEEEEHHHHHHT----------HHHH-TTTCSEEEEECSSCCCTTTHHHHHHTCCC
T ss_pred -CC--CeEEEEeCCCCC----cCCEEEEeHHHHHhh----------HHHh-cccCCEEEEECCccCCChHHHHHHHhccC
Confidence 32 228888887654 478999999988653 2223 25699999999999999999999999899
Q ss_pred ceEEEEcccCCCCcchH
Q 010367 172 HCKLGLTATLVREDERI 188 (512)
Q Consensus 172 ~~~l~LTATp~~~~~~~ 188 (512)
.++|+|||||.++|+..
T Consensus 219 ~~~l~LSATp~r~D~~~ 235 (237)
T 2fz4_A 219 PFRLGLTATFEREDGRH 235 (237)
T ss_dssp SEEEEEEESCC------
T ss_pred CEEEEEecCCCCCCCCC
Confidence 99999999999988763
No 58
>1nkt_A Preprotein translocase SECA 1 subunit; preprotein translocation, ATPase, transmembrane transport, helicase-like motor domain; HET: ADP; 2.60A {Mycobacterium tuberculosis} SCOP: a.162.1.1 a.172.1.1 c.37.1.19 c.37.1.19 PDB: 1nl3_A
Probab=99.92 E-value=8e-24 Score=228.06 Aligned_cols=326 Identities=15% Similarity=0.146 Sum_probs=193.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH--hc-CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC--RI-KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~--~~-~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
+.++|.|..++..++.+ . |..++||+|||+++..++. .+ ++.++||+|+..|+.|..+.+..++..-...++
T Consensus 110 ~rP~~VQ~~~ip~Ll~G----~-Iaem~TGeGKTLa~~LP~~l~aL~g~~v~VvTpTreLA~Qdae~m~~l~~~lGLsv~ 184 (922)
T 1nkt_A 110 QRPFDVQVMGAAALHLG----N-VAEMKTGEGKTLTCVLPAYLNALAGNGVHIVTVNDYLAKRDSEWMGRVHRFLGLQVG 184 (922)
T ss_dssp CCCCHHHHHHHHHHHTT----E-EEECCTTSCHHHHTHHHHHHHHTTTSCEEEEESSHHHHHHHHHHHHHHHHHTTCCEE
T ss_pred CCCCHHHHHHHHhHhcC----C-EEEecCCCccHHHHHHHHHHHHHhCCCeEEEeCCHHHHHHHHHHHHHHHhhcCCeEE
Confidence 57889999999987754 2 9999999999999877763 23 568999999999997755555444332334677
Q ss_pred EEcCCcccc---ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc------------------
Q 010367 101 RFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA------------------ 159 (512)
Q Consensus 101 ~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~------------------ 159 (512)
++.|+.... ....++|+++|++.|....-+.+.. .....+..+.+.++||||||++..
T Consensus 185 ~i~gg~~~~~r~~~y~~DIvygTpgrlgfDyLrD~m~-~~~~~l~lr~l~~lIVDEaDsmLiDeartPLiiSg~~~~~~~ 263 (922)
T 1nkt_A 185 VILATMTPDERRVAYNADITYGTNNEFGFDYLRDNMA-HSLDDLVQRGHHYAIVDEVDSILIDEARTPLIISGPADGASN 263 (922)
T ss_dssp ECCTTCCHHHHHHHHHSSEEEEEHHHHHHHHHHHTTC-SSGGGCCCCCCCEEEETTHHHHHTTGGGSCEEEEEECCCCHH
T ss_pred EEeCCCCHHHHHHhcCCCEEEECchHhhHHHHHhhhh-ccHhhhccCCCCEEEEeChHHHHHhcCccceeecCCCCcchh
Confidence 777764321 1235789999999873210000000 000122235788999999998752
Q ss_pred --hHHHHHHHhcc----------cceEE-----------------EEcccCCCCcchHhh-h--HhhhC-----------
Q 010367 160 --HMFRKVISLTK----------SHCKL-----------------GLTATLVREDERITD-L--NFLIG----------- 196 (512)
Q Consensus 160 --~~~~~~l~~~~----------~~~~l-----------------~LTATp~~~~~~~~~-l--~~l~g----------- 196 (512)
..+..++..++ .+.++ ++|||...-...+.. + ..++.
T Consensus 264 ~y~~i~~iv~~L~~~~dy~vDek~rqv~Lte~G~~~~e~~l~i~~Lfsat~~~l~~~i~~aL~A~~l~~~d~dYiV~dg~ 343 (922)
T 1nkt_A 264 WYTEFARLAPLMEKDVHYEVDLRKRTVGVHEKGVEFVEDQLGIDNLYEAANSPLVSYLNNALKAKELFSRDKDYIVRDGE 343 (922)
T ss_dssp HHHHHHHHHHHSCBTTTEEEETTTTEEEECHHHHHHHHHHHTCSSTTCSTTCCHHHHHHHHHHHHHHCCBTTTEEECSSC
T ss_pred HHHHHHHHHHhCcccccceeccCcceEEecHhHHHHHHHHhCCccccCCcchhHHHHHHHHHHHHHHhhcccceeeecCc
Confidence 13455666664 23334 556664321000000 0 01111
Q ss_pred ---------Cce----eeecHHHHHh--CCCcccceeEEEEcCCC-HHHHHHHH---------HhhchHHHH--------
Q 010367 197 ---------PKL----YEANWLDLVK--GGFIANVQCAEVWCPMT-KEFFSEYL---------KKENSKKKQ-------- 243 (512)
Q Consensus 197 ---------p~~----~~~~~~~l~~--~~~l~~~~~~~~~~~~~-~~~~~~~l---------~~~~~~~~~-------- 243 (512)
... +...+.+.++ .+.-....... ....+ ..++..|- ..+......
T Consensus 344 vviVDe~TGR~m~grr~sdGLHQaieaKe~V~I~~e~~T-latIt~Qnyfr~Y~kL~GMTGTa~te~~Ef~~iY~l~vv~ 422 (922)
T 1nkt_A 344 VLIVDEFTGRVLIGRRYNEGMHQAIEAKEHVEIKAENQT-LATITLQNYFRLYDKLAGMTGTAQTEAAELHEIYKLGVVS 422 (922)
T ss_dssp EEEBCSSSCCBCTTCCCSTTHHHHHHHHTTCCCCCCEEE-EEEECHHHHHTTSSEEEEEESCCGGGHHHHHHHHCCEEEE
T ss_pred eEEEecccCcccCCccccchhhHHHhccccccccccccc-cceeehHHHHHhhhhhhccccCchhHHHHHHHHhCCCeEE
Confidence 000 0011111110 11110000000 00011 00110000 000000000
Q ss_pred --------------HHhhcCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh---C--CCceeCCCCHHHHHH
Q 010367 244 --------------ALYVMNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL---R--KPMIYGATSHVERTK 304 (512)
Q Consensus 244 --------------~~~~~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L---~--~~~i~g~~~~~eR~~ 304 (512)
.++.....|+.++...+.... ..|.++||||.+++.++.++..| + ..++||+..+.++.-
T Consensus 423 IPtn~p~~R~d~~d~v~~t~~~K~~al~~~i~~~~-~~gqpvLVft~Sie~sE~Ls~~L~~~Gi~~~vLnak~~~rEa~i 501 (922)
T 1nkt_A 423 IPTNMPMIREDQSDLIYKTEEAKYIAVVDDVAERY-AKGQPVLIGTTSVERSEYLSRQFTKRRIPHNVLNAKYHEQEATI 501 (922)
T ss_dssp CCCSSCCCCEECCCEEESCHHHHHHHHHHHHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHTTCCCEEECSSCHHHHHHH
T ss_pred eCCCCCcccccCCcEEEeCHHHHHHHHHHHHHHHH-hcCCcEEEEECCHHHHHHHHHHHHHCCCCEEEecCChhHHHHHH
Confidence 111222347777666664332 35788999999999999999999 3 347999988777777
Q ss_pred HHHHhhCCCCccEEEEeCCCcccccCccc---------------------------------------------------
Q 010367 305 ILQAFKCSRDLNTIFLSKVGDNSIDIPEA--------------------------------------------------- 333 (512)
Q Consensus 305 il~~F~~~~~~~vlv~t~~~~~GlDlp~~--------------------------------------------------- 333 (512)
+.+.|+.+ .|+|+|+++++|+|++..
T Consensus 502 ia~agr~G---~VtIATnmAgRGtDI~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~G 578 (922)
T 1nkt_A 502 IAVAGRRG---GVTVATNMAGRGTDIVLGGNVDFLTDQRLRERGLDPVETPEEYEAAWHSELPIVKEEASKEAKEVIEAG 578 (922)
T ss_dssp HHTTTSTT---CEEEEETTCSTTCCCCTTCCHHHHHHHHHHHTTCCTTTSHHHHHHHHHHHHHHHHHHTTHHHHHHHHTT
T ss_pred HHhcCCCC---eEEEecchhhcCccccCCCCHHHHHHHHHhhccccccccchhhHHHHHHHHHHHHHHHHHhhhHHHhcC
Confidence 77788776 699999999999999964
Q ss_pred -cEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 334 -NVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 334 -~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
.+||.++.|. |++.|.|++||+||.|.
T Consensus 579 GlhVI~te~pe-s~riy~qr~GRTGRqGd 606 (922)
T 1nkt_A 579 GLYVLGTERHE-SRRIDNQLRGRSGRQGD 606 (922)
T ss_dssp SEEEEECSCCS-SHHHHHHHHHTSSGGGC
T ss_pred CcEEEeccCCC-CHHHHHHHhcccccCCC
Confidence 4899998887 99999999999999884
No 59
>1rif_A DAR protein, DNA helicase UVSW; bacteriophage, RECG, SF2, DNA binding protein; HET: DNA; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.23
Probab=99.91 E-value=4.4e-24 Score=209.03 Aligned_cols=162 Identities=23% Similarity=0.308 Sum_probs=133.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
++|+|||.+++..++.++ ++++++|||+|||++++.++... .+++|||||+++|+.||.++|.+|+..+...+
T Consensus 112 ~~l~~~Q~~ai~~~l~~~---~~ll~~~tGsGKT~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~l~~~~~~~~~~~ 188 (282)
T 1rif_A 112 IEPHWYQKDAVFEGLVNR---RRILNLPTSAGRSLIQALLARYYLENYEGKILIIVPTTALTTQMADDFVDYRLFSHAMI 188 (282)
T ss_dssp CCCCHHHHHHHHHHHHHS---EEEECCCTTSCHHHHHHHHHHHHHHHCSSEEEEECSSHHHHHHHHHHHHHHTSCCGGGE
T ss_pred cCccHHHHHHHHHHHhcC---CeEEEcCCCCCcHHHHHHHHHHHHHcCCCeEEEEECCHHHHHHHHHHHHHhcccccceE
Confidence 589999999999998875 78999999999999998777542 34899999999999999999999976555667
Q ss_pred EEEcCCcccc--ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhc-ccceEEE
Q 010367 100 CRFTSDSKER--FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLT-KSHCKLG 176 (512)
Q Consensus 100 ~~~~~~~~~~--~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~-~~~~~l~ 176 (512)
..+.++.... .....+|+|+||+.+..... .. ...+++||+||||++.++.+..++..+ ...++++
T Consensus 189 ~~~~~~~~~~~~~~~~~~I~v~T~~~l~~~~~---------~~--~~~~~~vIiDEaH~~~~~~~~~il~~~~~~~~~l~ 257 (282)
T 1rif_A 189 KKIGGGASKDDKYKNDAPVVVGTWQTVVKQPK---------EW--FSQFGMMMNDECHLATGKSISSIISGLNNCMFKFG 257 (282)
T ss_dssp EECSTTCSSTTCCCTTCSEEEECHHHHTTSCG---------GG--GGGEEEEEEETGGGCCHHHHHHHTTTCTTCCEEEE
T ss_pred EEEeCCCcchhhhccCCcEEEEchHHHHhhHH---------HH--HhhCCEEEEECCccCCcccHHHHHHHhhcCCeEEE
Confidence 7766664321 12568899999998875421 11 257899999999999999999888887 5778999
Q ss_pred EcccCCCCcchHhhhHhhhCCce
Q 010367 177 LTATLVREDERITDLNFLIGPKL 199 (512)
Q Consensus 177 LTATp~~~~~~~~~l~~l~gp~~ 199 (512)
|||||.+.+.....+..++||..
T Consensus 258 lSATp~~~~~~~~~l~~l~g~i~ 280 (282)
T 1rif_A 258 LSGSLRDGKANIMQYVGMFGEIF 280 (282)
T ss_dssp ECSSCCTTSTTHHHHHHHHCEEE
T ss_pred EeCCCCCcchHHHHHHHhcCCcc
Confidence 99999988888888888999864
No 60
>1c4o_A DNA nucleotide excision repair enzyme UVRB; uvrabc, helicase, hypertherm protein, replication; HET: DNA BOG; 1.50A {Thermus thermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1d2m_A*
Probab=99.90 E-value=1.8e-22 Score=219.40 Aligned_cols=107 Identities=16% Similarity=0.245 Sum_probs=92.8
Q ss_pred CCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEecC
Q 010367 267 RGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQISS 341 (512)
Q Consensus 267 ~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~~ 341 (512)
.+.++||||+++..++.+++.|. +.++||++++.+|.++++.|+.+ .++|||+|+++++|+|+|++++||+++.
T Consensus 438 ~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~~~~f~~g-~~~VLvaT~~l~~GlDip~v~lVI~~d~ 516 (664)
T 1c4o_A 438 RGERTLVTVLTVRMAEELTSFLVEHGIRARYLHHELDAFKRQALIRDLRLG-HYDCLVGINLLREGLDIPEVSLVAILDA 516 (664)
T ss_dssp TTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHTT-SCSEEEESCCCCTTCCCTTEEEEEETTT
T ss_pred cCCEEEEEECCHHHHHHHHHHHHhcCCCceeecCCCCHHHHHHHHHHhhcC-CceEEEccChhhcCccCCCCCEEEEeCC
Confidence 57899999999999999999982 45689999999999999999997 9999999999999999999999999975
Q ss_pred -----CCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhh
Q 010367 342 -----HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 342 -----~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (512)
+. |...|+||+||+||.+ .| .++.+++..+..+
T Consensus 517 d~~G~p~-s~~~~iQr~GRagR~~-----------~G---~~i~~~~~~~~~~ 554 (664)
T 1c4o_A 517 DKEGFLR-SERSLIQTIGRAARNA-----------RG---EVWLYADRVSEAM 554 (664)
T ss_dssp TSCSGGG-SHHHHHHHHGGGTTST-----------TC---EEEEECSSCCHHH
T ss_pred cccCCCC-CHHHHHHHHCccCcCC-----------CC---EEEEEEcCCCHHH
Confidence 44 9999999999999987 23 3555677666543
No 61
>1z5z_A Helicase of the SNF2/RAD54 family; hydrolase, recombination, hydrolase-recombination complex; 2.00A {Sulfolobus solfataricus} SCOP: c.37.1.19
Probab=99.88 E-value=5.6e-22 Score=192.22 Aligned_cols=175 Identities=22% Similarity=0.246 Sum_probs=124.4
Q ss_pred CcccceeEEEEcCCCHHHHHHHHHhhc----------h--HHHHHH---------------------hhcCcchHHHHHH
Q 010367 212 FIANVQCAEVWCPMTKEFFSEYLKKEN----------S--KKKQAL---------------------YVMNPNKFRACEF 258 (512)
Q Consensus 212 ~l~~~~~~~~~~~~~~~~~~~~l~~~~----------~--~~~~~~---------------------~~~~~~k~~~l~~ 258 (512)
.+++.....++|+|++.+...|-.... . .....+ ....+.|+..+..
T Consensus 24 ~LP~k~e~~v~v~ls~~Q~~~Y~~~~~~~~~~~~~~~~~~~~~~~l~~l~~Lrq~~~hP~l~~~~~~~~~~s~K~~~L~~ 103 (271)
T 1z5z_A 24 DLPDKIETNVYCNLTPEQAAMYKAEVENLFNNIDSVTGIKRKGMILSTLLKLKQIVDHPALLKGGEQSVRRSGKMIRTME 103 (271)
T ss_dssp ----CEEEEEEECCCHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHHTTCTHHHHCSCCCSTTCHHHHHHHH
T ss_pred hCCCCEEEEEEeCCCHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHcCCHHHhcCCccccccCHHHHHHHH
Confidence 477778888999999886554431100 0 000000 0123568999999
Q ss_pred HHHHhhhcCCCeEEEEecCHHHHHHHHHHh----C--CCceeCCCCHHHHHHHHHHhhCCCCcc-EEEEeCCCcccccCc
Q 010367 259 LIRFHEQQRGDKIIVFADNLFALTEYAMKL----R--KPMIYGATSHVERTKILQAFKCSRDLN-TIFLSKVGDNSIDIP 331 (512)
Q Consensus 259 ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L----~--~~~i~g~~~~~eR~~il~~F~~~~~~~-vlv~t~~~~~GlDlp 331 (512)
++.... ..++|+||||+++..++.+...| + +..+||++++.+|.+++++|++++.++ +|++|+++++|+|++
T Consensus 104 ll~~~~-~~~~kvlIFs~~~~~~~~l~~~L~~~~g~~~~~l~G~~~~~~R~~~i~~F~~~~~~~v~L~st~~~g~Glnl~ 182 (271)
T 1z5z_A 104 IIEEAL-DEGDKIAIFTQFVDMGKIIRNIIEKELNTEVPFLYGELSKKERDDIISKFQNNPSVKFIVLSVKAGGFGINLT 182 (271)
T ss_dssp HHHHHH-HTTCCEEEEESCHHHHHHHHHHHHHHHCSCCCEECTTSCHHHHHHHHHHHHHCTTCCEEEEECCTTCCCCCCT
T ss_pred HHHHHH-hCCCeEEEEeccHHHHHHHHHHHHHhcCCcEEEEECCCCHHHHHHHHHHhcCCCCCCEEEEehhhhcCCcCcc
Confidence 998775 56899999999999999998887 3 456999999999999999999986777 577899999999999
Q ss_pred cccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHH
Q 010367 332 EANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFL 399 (512)
Q Consensus 332 ~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l 399 (512)
.+++||++++|| ||..+.||+||++|.| |.+.+.+|.+++.+|+|+.+.+....+.
T Consensus 183 ~a~~VI~~d~~w-np~~~~Q~~gR~~R~G-----------q~~~v~v~~li~~~TiEe~i~~~~~~K~ 238 (271)
T 1z5z_A 183 SANRVIHFDRWW-NPAVEDQATDRVYRIG-----------QTRNVIVHKLISVGTLEEKIDQLLAFKR 238 (271)
T ss_dssp TCSEEEECSCCS-CTTTC-------------------------CCEEEEEEETTSHHHHHHHHHHHCH
T ss_pred cCCEEEEECCCC-ChhHHHHHHHhccccC-----------CCCceEEEEEeeCCCHHHHHHHHHHHHH
Confidence 999999999888 9999999999999999 5556999999999999998876654443
No 62
>2d7d_A Uvrabc system protein B; helicase, protein-DNA-ADP ternary complex, hydrolase/DNA complex; HET: ADP; 2.10A {Bacillus subtilis} PDB: 2nmv_A* 2fdc_A* 1t5l_A 3uwx_B 1d9z_A* 1d9x_A 2d7d_B* 2nmv_B*
Probab=99.88 E-value=1.3e-20 Score=204.83 Aligned_cols=108 Identities=18% Similarity=0.267 Sum_probs=93.1
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccccCccccEEEEec
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSIDIPEANVIIQIS 340 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~GlDlp~~~~vI~~~ 340 (512)
..+.++||||+++..++.+++.|. +.++||++++.+|.++++.|+.+ .++|||+|+++++|+|+|++++||+++
T Consensus 443 ~~~~~vlVf~~t~~~ae~L~~~L~~~gi~~~~lh~~~~~~~R~~~l~~f~~g-~~~VLVaT~~l~~GlDip~v~lVi~~d 521 (661)
T 2d7d_A 443 ERNERVLVTTLTKKMSEDLTDYLKEIGIKVNYLHSEIKTLERIEIIRDLRLG-KYDVLVGINLLREGLDIPEVSLVAILD 521 (661)
T ss_dssp TTTCEEEEECSSHHHHHHHHHHHHHTTCCEEEECTTCCHHHHHHHHHHHHHT-SCSEEEESCCCSTTCCCTTEEEEEETT
T ss_pred hcCCeEEEEECCHHHHHHHHHHHHhcCCCeEEEeCCCCHHHHHHHHHHHhcC-CeEEEEecchhhCCcccCCCCEEEEeC
Confidence 357899999999999999999982 44689999999999999999997 899999999999999999999999997
Q ss_pred C-----CCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhh
Q 010367 341 S-----HAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEM 389 (512)
Q Consensus 341 ~-----~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~ 389 (512)
. +. |...|+||+||+||.+ . +.++.+++..+..+
T Consensus 522 ~d~~G~p~-s~~~~iQr~GRagR~~-----------~---G~~i~~~~~~~~~~ 560 (661)
T 2d7d_A 522 ADKEGFLR-SERSLIQTIGRAARNA-----------E---GRVIMYADKITKSM 560 (661)
T ss_dssp TTCCTTTT-SHHHHHHHHHTTTTST-----------T---CEEEEECSSCCHHH
T ss_pred cccccCCC-CHHHHHHHhCcccCCC-----------C---CEEEEEEeCCCHHH
Confidence 5 44 9999999999999975 2 33556677666543
No 63
>3b6e_A Interferon-induced helicase C domain-containing P; DECH, DEXD/H RNA-binding helicase, innate immunity, IFIH1, S genomics; 1.60A {Homo sapiens}
Probab=99.84 E-value=8.8e-21 Score=177.45 Aligned_cols=155 Identities=21% Similarity=0.308 Sum_probs=105.6
Q ss_pred CCCCCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhhHHH-HHHHHH
Q 010367 20 LKPHAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQ-WAFQFK 89 (512)
Q Consensus 20 l~~~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Q-w~~~~~ 89 (512)
....++|+|||.++++.++.+. ++++.+|||+|||++++.++... ..++||+||+++|+.| |.+.+.
T Consensus 28 ~~~~~~l~~~Q~~~i~~~~~~~---~~li~~~tGsGKT~~~~~~~~~~~~~~~~~~~~~~~lil~p~~~L~~q~~~~~~~ 104 (216)
T 3b6e_A 28 PEPELQLRPYQMEVAQPALEGK---NIIICLPTGSGKTRVAVYIAKDHLDKKKKASEPGKVIVLVNKVLLVEQLFRKEFQ 104 (216)
T ss_dssp CSCCCCCCHHHHHHHHHHHTTC---CEEEECSCHHHHHHHHHHHHHHHHHHHHHTTCCCCEEEEESSHHHHHHHHHHTHH
T ss_pred ccCCCCchHHHHHHHHHHhcCC---CEEEEcCCCCCHHHHHHHHHHHHHhhcccccCCCcEEEEECHHHHHHHHHHHHHH
Confidence 3456899999999999998764 89999999999999998887643 5789999999999999 999999
Q ss_pred HhhCCCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-HHH
Q 010367 90 LWSTIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-MFR 163 (512)
Q Consensus 90 ~~~~~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-~~~ 163 (512)
.|... ...+..+.++.... ....++|+|+||+.+.....+.... ....+....+++||+||||++... .+.
T Consensus 105 ~~~~~-~~~v~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~~~~--~~~~~~~~~~~~iIiDEah~~~~~~~~~ 181 (216)
T 3b6e_A 105 PFLKK-WYRVIGLSGDTQLKISFPEVVKSCDIIISTAQILENSLLNLENG--EDAGVQLSDFSLIIIDECHHTNKEAVYN 181 (216)
T ss_dssp HHHTT-TSCEEECCC---CCCCHHHHHHHCSEEEEEHHHHHHHHHC---------CCCGGGCSEEEETTC-------CHH
T ss_pred HHhcc-CceEEEEeCCcccchhHHhhccCCCEEEECHHHHHHHHhccCcc--cccccchhcccEEEEECchhhccCCcHH
Confidence 98654 34677777764321 1234789999999986542211000 000012257899999999999764 344
Q ss_pred HHHHhc------------------ccceEEEEccc
Q 010367 164 KVISLT------------------KSHCKLGLTAT 180 (512)
Q Consensus 164 ~~l~~~------------------~~~~~l~LTAT 180 (512)
.++..+ +..++|+||||
T Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~lSAT 216 (216)
T 3b6e_A 182 NIMRHYLMQKLKNNRLKKENKPVIPLPQILGLTAS 216 (216)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCCCCCCCEEEEEECC
T ss_pred HHHHHHHHHhcccccccccccCCCCcceEEEeecC
Confidence 443322 34579999998
No 64
>1t6n_A Probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; HET: FLC; 1.94A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=1.4e-20 Score=177.03 Aligned_cols=150 Identities=15% Similarity=0.170 Sum_probs=113.0
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC-CC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-DD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~-~~ 97 (512)
.|+|||.++++.++.+. ++++.+|||+|||++++.++... ..++||+||+++|+.||.+++.++.... ..
T Consensus 36 ~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 112 (220)
T 1t6n_A 36 HPSEVQHECIPQAILGM---DVLCQAKSGMGKTAVFVLATLQQLEPVTGQVSVLVMCHTRELAFQISKEYERFSKYMPNV 112 (220)
T ss_dssp CCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCTTCCCEEEECSCHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCchhhhhhHHHHHhhhccCCCEEEEEEeCCHHHHHHHHHHHHHHHhhCCCc
Confidence 59999999999998864 89999999999999998888654 2389999999999999999999986443 56
Q ss_pred cEEEEcCCcccc-----c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-hHH----HHHH
Q 010367 98 QICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMF----RKVI 166 (512)
Q Consensus 98 ~v~~~~~~~~~~-----~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-~~~----~~~l 166 (512)
.+..+.|+.... + ...++|+|+|++.+....++ ..+....++++|+||||++.. ..+ ..++
T Consensus 113 ~v~~~~g~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~ 184 (220)
T 1t6n_A 113 KVAVFFGGLSIKKDEEVLKKNCPHIVVGTPGRILALARN--------KSLNLKHIKHFILDECDKMLEQLDMRRDVQEIF 184 (220)
T ss_dssp CEEEESCCSCHHHHHHHHHHSCCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEESHHHHHSSHHHHHHHHHHH
T ss_pred eEEEEeCCCChHHHHHHHhcCCCCEEEeCHHHHHHHHHh--------CCCCcccCCEEEEcCHHHHhcccCcHHHHHHHH
Confidence 788888874421 1 23568999999988653211 111235789999999999865 333 3344
Q ss_pred Hhcc-cceEEEEcccCCCCc
Q 010367 167 SLTK-SHCKLGLTATLVRED 185 (512)
Q Consensus 167 ~~~~-~~~~l~LTATp~~~~ 185 (512)
..++ ..++++|||||..+.
T Consensus 185 ~~~~~~~~~i~~SAT~~~~~ 204 (220)
T 1t6n_A 185 RMTPHEKQVMMFSATLSKEI 204 (220)
T ss_dssp HTSCSSSEEEEEESCCCTTT
T ss_pred HhCCCcCeEEEEEeecCHHH
Confidence 4443 457899999997643
No 65
>1vec_A ATP-dependent RNA helicase P54; DEAD-box protein, RNA binding protein; HET: TLA; 2.01A {Homo sapiens} SCOP: c.37.1.19
Probab=99.83 E-value=1.7e-20 Score=174.41 Aligned_cols=149 Identities=16% Similarity=0.105 Sum_probs=112.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC-C
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-D 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~-~ 96 (512)
.+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.++.... .
T Consensus 24 ~~~~~~Q~~~i~~~~~~~---~~lv~apTGsGKT~~~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 100 (206)
T 1vec_A 24 EKPSPIQEESIPIALSGR---DILARAKNGTGKSGAYLIPLLERLDLKKDNIQAMVIVPTRELALQVSQICIQVSKHMGG 100 (206)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCSSSTTHHHHHHHHHHHCCTTSCSCCEEEECSCHHHHHHHHHHHHHHTTTSSS
T ss_pred CCCCHHHHHHHHHHccCC---CEEEECCCCCchHHHHHHHHHHHhcccCCCeeEEEEeCcHHHHHHHHHHHHHHHhhcCC
Confidence 479999999999988764 89999999999999988776543 2479999999999999999999986433 4
Q ss_pred CcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHH----HHHHH
Q 010367 97 DQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMF----RKVIS 167 (512)
Q Consensus 97 ~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~----~~~l~ 167 (512)
..+..+.|+... .....++|+|+|++.+.....+. .+....++++|+||||++....| ..++.
T Consensus 101 ~~~~~~~g~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~~--------~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~ 172 (206)
T 1vec_A 101 AKVMATTGGTNLRDDIMRLDDTVHVVIATPGRILDLIKKG--------VAKVDHVQMIVLDEADKLLSQDFVQIMEDIIL 172 (206)
T ss_dssp CCEEEECSSSCHHHHHHHTTSCCSEEEECHHHHHHHHHTT--------CSCCTTCCEEEEETHHHHTSTTTHHHHHHHHH
T ss_pred ceEEEEeCCccHHHHHHhcCCCCCEEEeCHHHHHHHHHcC--------CcCcccCCEEEEEChHHhHhhCcHHHHHHHHH
Confidence 567777776432 13456889999999886432110 11125789999999999887544 34444
Q ss_pred hcc-cceEEEEcccCCC
Q 010367 168 LTK-SHCKLGLTATLVR 183 (512)
Q Consensus 168 ~~~-~~~~l~LTATp~~ 183 (512)
.++ ..++++||||+..
T Consensus 173 ~~~~~~~~l~~SAT~~~ 189 (206)
T 1vec_A 173 TLPKNRQILLYSATFPL 189 (206)
T ss_dssp HSCTTCEEEEEESCCCH
T ss_pred hCCccceEEEEEeeCCH
Confidence 444 4578999999963
No 66
>1q0u_A Bstdead; DEAD protein, RNA binding protein; 1.85A {Geobacillus stearothermophilus} SCOP: c.37.1.19
Probab=99.82 E-value=3e-20 Score=174.66 Aligned_cols=149 Identities=11% Similarity=0.042 Sum_probs=111.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCC--
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~-- 95 (512)
.+|+|+|.++++.++.+. ++++++|||+|||++++.++... +.++||++|+++|+.||.+++.++....
T Consensus 25 ~~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 101 (219)
T 1q0u_A 25 YKPTEIQERIIPGALRGE---SMVGQSQTGTGKTHAYLLPIMEKIKPERAEVQAVITAPTRELATQIYHETLKITKFCPK 101 (219)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEECCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHHTTSCG
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhCcCCceEEEEcCcHHHHHHHHHHHHHHhhhccc
Confidence 579999999999998875 89999999999999987776543 3589999999999999999999987543
Q ss_pred --CCcEEEEcCCccc-----cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----HHH
Q 010367 96 --DDQICRFTSDSKE-----RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRK 164 (512)
Q Consensus 96 --~~~v~~~~~~~~~-----~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----~~~ 164 (512)
...+..+.|+... .....++|+|+|++.+.....+ ..+....++++|+||||++.+.. ...
T Consensus 102 ~~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~~~~~~~~~~l~~ 173 (219)
T 1q0u_A 102 DRMIVARCLIGGTDKQKALEKLNVQPHIVIGTPGRINDFIRE--------QALDVHTAHILVVDEADLMLDMGFITDVDQ 173 (219)
T ss_dssp GGCCCEEEECCCSHHHHTTCCCSSCCSEEEECHHHHHHHHHT--------TCCCGGGCCEEEECSHHHHHHTTCHHHHHH
T ss_pred ccceEEEEEeCCCCHHHHHHHcCCCCCEEEeCHHHHHHHHHc--------CCCCcCcceEEEEcCchHHhhhChHHHHHH
Confidence 3466677766432 1234678999999988643211 01112567899999999987543 444
Q ss_pred HHHhcc-cceEEEEcccCCC
Q 010367 165 VISLTK-SHCKLGLTATLVR 183 (512)
Q Consensus 165 ~l~~~~-~~~~l~LTATp~~ 183 (512)
++..++ ..++++||||+..
T Consensus 174 i~~~~~~~~~~l~~SAT~~~ 193 (219)
T 1q0u_A 174 IAARMPKDLQMLVFSATIPE 193 (219)
T ss_dssp HHHTSCTTCEEEEEESCCCG
T ss_pred HHHhCCcccEEEEEecCCCH
Confidence 555554 3578999999964
No 67
>2pl3_A Probable ATP-dependent RNA helicase DDX10; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; HET: ADP; 2.15A {Homo sapiens}
Probab=99.82 E-value=4.7e-20 Score=175.42 Aligned_cols=150 Identities=13% Similarity=0.059 Sum_probs=112.2
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----------CCCEEEEEcChhhHHHHHHHHHHhhC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----------KKSCLCLATNAVSVDQWAFQFKLWST 93 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----------~~~~Lvl~P~~~L~~Qw~~~~~~~~~ 93 (512)
..|+|+|.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++..+..
T Consensus 46 ~~~~~~Q~~~i~~~~~~~---~~li~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~ 122 (236)
T 2pl3_A 46 RLVTEIQKQTIGLALQGK---DVLGAAKTGSGKTLAFLVPVLEALYRLQWTSTDGLGVLIISPTRELAYQTFEVLRKVGK 122 (236)
T ss_dssp CBCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEeCCCCcHHHHHHHHHHHHHHhhcccccCCceEEEEeCCHHHHHHHHHHHHHHhC
Confidence 479999999999988764 89999999999999987766432 45799999999999999999999875
Q ss_pred CCCCcEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHH
Q 010367 94 IQDDQICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKV 165 (512)
Q Consensus 94 ~~~~~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~ 165 (512)
.....+..+.|+.... ....++|+|+||+.+.....+. ..+....++++|+||||++.+. .+..+
T Consensus 123 ~~~~~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~l~~~-------~~~~~~~~~~lViDEah~~~~~~~~~~~~~i 195 (236)
T 2pl3_A 123 NHDFSAGLIIGGKDLKHEAERINNINILVCTPGRLLQHMDET-------VSFHATDLQMLVLDEADRILDMGFADTMNAV 195 (236)
T ss_dssp TSSCCEEEECCC--CHHHHHHHTTCSEEEECHHHHHHHHHHC-------SSCCCTTCCEEEETTHHHHHHTTTHHHHHHH
T ss_pred CCCeeEEEEECCCCHHHHHHhCCCCCEEEECHHHHHHHHHhc-------CCcccccccEEEEeChHHHhcCCcHHHHHHH
Confidence 5556778888764321 1246899999999886431100 0122357889999999998754 44556
Q ss_pred HHhcc-cceEEEEcccCCC
Q 010367 166 ISLTK-SHCKLGLTATLVR 183 (512)
Q Consensus 166 l~~~~-~~~~l~LTATp~~ 183 (512)
+..++ ..++++||||+..
T Consensus 196 ~~~~~~~~~~l~~SAT~~~ 214 (236)
T 2pl3_A 196 IENLPKKRQTLLFSATQTK 214 (236)
T ss_dssp HHTSCTTSEEEEEESSCCH
T ss_pred HHhCCCCCeEEEEEeeCCH
Confidence 66654 3468999999964
No 68
>2gxq_A Heat resistant RNA dependent ATPase; RNA helicase, atomic resolution, AMP complex, ribosome biogenesis, thermophilic, hydrolase; HET: AMP; 1.20A {Thermus thermophilus HB27} PDB: 2gxs_A* 2gxu_A 3mwj_A 3mwk_A* 3mwl_A* 3nbf_A* 3nej_A
Probab=99.82 E-value=3.4e-20 Score=172.47 Aligned_cols=147 Identities=18% Similarity=0.093 Sum_probs=110.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
.+|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||+||+++|+.||.+++.+++..
T Consensus 22 ~~~~~~Q~~~i~~~~~~~---~~li~~~TGsGKT~~~~~~~~~~l~~~~~~~~~~~~lil~P~~~L~~q~~~~~~~~~~~ 98 (207)
T 2gxq_A 22 TTPTPIQAAALPLALEGK---DLIGQARTGTGKTLAFALPIAERLAPSQERGRKPRALVLTPTRELALQVASELTAVAPH 98 (207)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHCCCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHCTT
T ss_pred CCCCHHHHHHHHHHcCCC---CEEEECCCCChHHHHHHHHHHHHHhhccccCCCCcEEEEECCHHHHHHHHHHHHHHhhc
Confidence 489999999999988764 89999999999999977766442 347999999999999999999998542
Q ss_pred CCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----HHHH
Q 010367 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKV 165 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----~~~~ 165 (512)
..+..+.++.... ....++|+|+|++.+.....+ ..+....++++|+||||++.+.. ...+
T Consensus 99 --~~~~~~~~~~~~~~~~~~~~~~~~i~v~T~~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~~~~i 168 (207)
T 2gxq_A 99 --LKVVAVYGGTGYGKQKEALLRGADAVVATPGRALDYLRQ--------GVLDLSRVEVAVLDEADEMLSMGFEEEVEAL 168 (207)
T ss_dssp --SCEEEECSSSCSHHHHHHHHHCCSEEEECHHHHHHHHHH--------TSSCCTTCSEEEEESHHHHHHTTCHHHHHHH
T ss_pred --ceEEEEECCCChHHHHHHhhCCCCEEEECHHHHHHHHHc--------CCcchhhceEEEEEChhHhhccchHHHHHHH
Confidence 4677777764321 224588999999988643110 11223578999999999986543 3444
Q ss_pred HHhcc-cceEEEEcccCCC
Q 010367 166 ISLTK-SHCKLGLTATLVR 183 (512)
Q Consensus 166 l~~~~-~~~~l~LTATp~~ 183 (512)
+..++ ..++++||||+..
T Consensus 169 ~~~~~~~~~~i~~SAT~~~ 187 (207)
T 2gxq_A 169 LSATPPSRQTLLFSATLPS 187 (207)
T ss_dssp HHTSCTTSEEEEECSSCCH
T ss_pred HHhCCccCeEEEEEEecCH
Confidence 44443 4578999999964
No 69
>1wrb_A DJVLGB; RNA helicase, DEAD BOX, VASA, structural genomics, NPPSFA, N project on protein structural and functional analyses; 2.40A {Dugesia japonica} SCOP: c.37.1.19
Probab=99.82 E-value=1e-19 Score=174.99 Aligned_cols=150 Identities=17% Similarity=0.178 Sum_probs=112.1
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---------------CCCEEEEEcChhhHHHHHHHH
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---------------KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---------------~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
..|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||+||+++|+.||.+++
T Consensus 44 ~~~~~~Q~~~i~~i~~~~---~~l~~a~TGsGKT~~~~~~~l~~l~~~~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~ 120 (253)
T 1wrb_A 44 QRPTPIQKNAIPAILEHR---DIMACAQTGSGKTAAFLIPIINHLVCQDLNQQRYSKTAYPKCLILAPTRELAIQILSES 120 (253)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHHHTTCC------CCBCCSEEEECSSHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhhccccccccccCCceEEEEECCHHHHHHHHHHH
Confidence 469999999999988864 89999999999999987776432 148999999999999999999
Q ss_pred HHhhCCCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch---
Q 010367 89 KLWSTIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH--- 160 (512)
Q Consensus 89 ~~~~~~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~--- 160 (512)
.++.......+..+.|+.... ....++|+|+|++.+.....+. .+....++++|+||||++.+.
T Consensus 121 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~Ivv~Tp~~l~~~l~~~--------~~~~~~~~~lViDEah~~~~~~~~ 192 (253)
T 1wrb_A 121 QKFSLNTPLRSCVVYGGADTHSQIREVQMGCHLLVATPGRLVDFIEKN--------KISLEFCKYIVLDEADRMLDMGFE 192 (253)
T ss_dssp HHHHTTSSCCEEEECSSSCSHHHHHHHSSCCSEEEECHHHHHHHHHTT--------SBCCTTCCEEEEETHHHHHHTTCH
T ss_pred HHHhccCCceEEEEECCCCHHHHHHHhCCCCCEEEECHHHHHHHHHcC--------CCChhhCCEEEEeCHHHHHhCchH
Confidence 998755556677777764321 2356899999999886532111 111256789999999998754
Q ss_pred -HHHHHHHhcc-----cceEEEEcccCCCC
Q 010367 161 -MFRKVISLTK-----SHCKLGLTATLVRE 184 (512)
Q Consensus 161 -~~~~~l~~~~-----~~~~l~LTATp~~~ 184 (512)
.+..++..+. ..++++|||||.++
T Consensus 193 ~~~~~i~~~~~~~~~~~~q~l~~SAT~~~~ 222 (253)
T 1wrb_A 193 PQIRKIIEESNMPSGINRQTLMFSATFPKE 222 (253)
T ss_dssp HHHHHHHHSSCCCCGGGCEEEEEESSCCHH
T ss_pred HHHHHHHhhccCCCCCCcEEEEEEEeCCHH
Confidence 4455555322 34689999999643
No 70
>1qde_A EIF4A, translation initiation factor 4A; DEAD box protein family, gene regulation; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.19 PDB: 1qva_A
Probab=99.81 E-value=5.8e-20 Score=173.21 Aligned_cols=149 Identities=17% Similarity=0.127 Sum_probs=109.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
..|+|||.++++.++.+. ++++.+|||+|||++++.++.. + +.++||++|+++|+.||.+++..+......
T Consensus 35 ~~~~~~Q~~~i~~~~~~~---~~lv~~pTGsGKT~~~~~~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~ 111 (224)
T 1qde_A 35 EEPSAIQQRAIMPIIEGH---DVLAQAQSGTGKTGTFSIAALQRIDTSVKAPQALMLAPTRELALQIQKVVMALAFHMDI 111 (224)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTCCSCCEEEECSSHHHHHHHHHHHHHHTTTSCC
T ss_pred CCCcHHHHHHHHHHhcCC---CEEEECCCCCcHHHHHHHHHHHHHhccCCCceEEEEECCHHHHHHHHHHHHHHhcccCc
Confidence 479999999999988764 8999999999999997665543 2 348999999999999999999998755556
Q ss_pred cEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHhc
Q 010367 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISLT 169 (512)
Q Consensus 98 ~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~~ 169 (512)
.+..+.|+.... ....++|+|+|++.+.....+ ..+....++++|+||||++.+. .+..++..+
T Consensus 112 ~~~~~~g~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~iViDEah~~~~~~~~~~l~~i~~~~ 183 (224)
T 1qde_A 112 KVHACIGGTSFVEDAEGLRDAQIVVGTPGRVFDNIQR--------RRFRTDKIKMFILDEADEMLSSGFKEQIYQIFTLL 183 (224)
T ss_dssp CEEEECC----------CTTCSEEEECHHHHHHHHHT--------TSSCCTTCCEEEEETHHHHHHTTCHHHHHHHHHHS
T ss_pred eEEEEeCCcchHHHHhcCCCCCEEEECHHHHHHHHHh--------CCcchhhCcEEEEcChhHHhhhhhHHHHHHHHHhC
Confidence 777777764321 123488999999988643211 0111256899999999998654 344455544
Q ss_pred c-cceEEEEcccCCC
Q 010367 170 K-SHCKLGLTATLVR 183 (512)
Q Consensus 170 ~-~~~~l~LTATp~~ 183 (512)
+ ..++++||||+..
T Consensus 184 ~~~~~~i~lSAT~~~ 198 (224)
T 1qde_A 184 PPTTQVVLLSATMPN 198 (224)
T ss_dssp CTTCEEEEEESSCCH
T ss_pred CccCeEEEEEeecCH
Confidence 3 3468999999964
No 71
>3ber_A Probable ATP-dependent RNA helicase DDX47; DEAD, AMP, structural genomics, structural GEN consortium, SGC, ATP-binding, hydrolase; HET: AMP PGE; 1.40A {Homo sapiens}
Probab=99.81 E-value=4.1e-20 Score=177.37 Aligned_cols=150 Identities=14% Similarity=0.101 Sum_probs=112.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
..|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++......
T Consensus 64 ~~~~~~Q~~~i~~i~~~~---~~lv~a~TGsGKT~~~~~~il~~l~~~~~~~~~lil~Ptr~L~~q~~~~~~~~~~~~~~ 140 (249)
T 3ber_A 64 TKPTKIQIEAIPLALQGR---DIIGLAETGSGKTGAFALPILNALLETPQRLFALVLTPTRELAFQISEQFEALGSSIGV 140 (249)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHHHSCCSSCEEEECSSHHHHHHHHHHHHHHHGGGTC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEEcCCCCCchhHhHHHHHHHHhcCCCCceEEEEeCCHHHHHHHHHHHHHHhccCCe
Confidence 479999999999988764 89999999999999987776432 346999999999999999999998654445
Q ss_pred cEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchH----HHHHHHh
Q 010367 98 QICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHM----FRKVISL 168 (512)
Q Consensus 98 ~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~----~~~~l~~ 168 (512)
.+..+.|+.... ....++|+|+|++++.....+ ...+....++++|+||||++.+.. +..++..
T Consensus 141 ~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~-------~~~~~l~~~~~lViDEah~l~~~~~~~~l~~i~~~ 213 (249)
T 3ber_A 141 QSAVIVGGIDSMSQSLALAKKPHIIIATPGRLIDHLEN-------TKGFNLRALKYLVMDEADRILNMDFETEVDKILKV 213 (249)
T ss_dssp CEEEECTTSCHHHHHHHHHTCCSEEEECHHHHHHHHHH-------STTCCCTTCCEEEECSHHHHHHTTCHHHHHHHHHS
T ss_pred eEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc-------CCCcCccccCEEEEcChhhhhccChHHHHHHHHHh
Confidence 677777764321 235689999999988643110 011122568899999999987653 3455555
Q ss_pred cc-cceEEEEcccCCC
Q 010367 169 TK-SHCKLGLTATLVR 183 (512)
Q Consensus 169 ~~-~~~~l~LTATp~~ 183 (512)
++ ..++++||||+..
T Consensus 214 ~~~~~~~l~~SAT~~~ 229 (249)
T 3ber_A 214 IPRDRKTFLFSATMTK 229 (249)
T ss_dssp SCSSSEEEEEESSCCH
T ss_pred CCCCCeEEEEeccCCH
Confidence 54 4578999999974
No 72
>3iuy_A Probable ATP-dependent RNA helicase DDX53; REC-A-like, DEAD-BOX, structural genomics, structural genomi consortium, SGC, ATP-binding, hydrolase; HET: AMP; 2.40A {Homo sapiens}
Probab=99.81 E-value=1.4e-19 Score=171.20 Aligned_cols=148 Identities=14% Similarity=0.124 Sum_probs=108.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh------------cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR------------IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~------------~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.+|+|+|.++++.++.+. +.++.+|||+|||++++.++.. .+.++||++|+++|+.||.+++.++
T Consensus 41 ~~~~~~Q~~~i~~~~~~~---~~l~~apTGsGKT~~~~l~~~~~l~~~~~~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~ 117 (228)
T 3iuy_A 41 LKPTPIQSQAWPIILQGI---DLIVVAQTGTGKTLSYLMPGFIHLDSQPISREQRNGPGMLVLTPTRELALHVEAECSKY 117 (228)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHC---------CCCSEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCChHHHHHHHHHHHHHHhccchhhccCCCcEEEEeCCHHHHHHHHHHHHHh
Confidence 489999999999988764 8999999999999998877643 3457999999999999999999998
Q ss_pred hCCCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HH
Q 010367 92 STIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MF 162 (512)
Q Consensus 92 ~~~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~ 162 (512)
. .....+..+.++.... ....++|+|+|++.+.....+ ..+...+++++|+||||++... .+
T Consensus 118 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~ 188 (228)
T 3iuy_A 118 S-YKGLKSICIYGGRNRNGQIEDISKGVDIIIATPGRLNDLQMN--------NSVNLRSITYLVIDEADKMLDMEFEPQI 188 (228)
T ss_dssp C-CTTCCEEEECC------CHHHHHSCCSEEEECHHHHHHHHHT--------TCCCCTTCCEEEECCHHHHHHTTCHHHH
T ss_pred c-ccCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCcCcccceEEEEECHHHHhccchHHHH
Confidence 5 3344566666653321 235679999999988653111 1111256899999999998754 44
Q ss_pred HHHHHhcc-cceEEEEcccCCC
Q 010367 163 RKVISLTK-SHCKLGLTATLVR 183 (512)
Q Consensus 163 ~~~l~~~~-~~~~l~LTATp~~ 183 (512)
..++..+. ..++++||||+..
T Consensus 189 ~~i~~~~~~~~~~l~~SAT~~~ 210 (228)
T 3iuy_A 189 RKILLDVRPDRQTVMTSATWPD 210 (228)
T ss_dssp HHHHHHSCSSCEEEEEESCCCH
T ss_pred HHHHHhCCcCCeEEEEEeeCCH
Confidence 55555554 4578999999864
No 73
>2oxc_A Probable ATP-dependent RNA helicase DDX20; DEAD, structural genomics, structural genomics consortium, SGC, hydrolase; HET: ADP; 1.30A {Homo sapiens} PDB: 3b7g_A*
Probab=99.81 E-value=1.2e-19 Score=171.91 Aligned_cols=148 Identities=16% Similarity=0.072 Sum_probs=110.7
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-hc-----CCCEEEEEcChhhHHHHHHHHHHhhCC-CCC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-RI-----KKSCLCLATNAVSVDQWAFQFKLWSTI-QDD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~-~~~ 97 (512)
.|+|||.++++.++.+. ++++.+|||+|||++++.++. .+ +.++||++|+++|+.||.+++.++... +..
T Consensus 46 ~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 122 (230)
T 2oxc_A 46 RPSPVQLKAIPLGRCGL---DLIVQAKSGTGKTCVFSTIALDSLVLENLSTQILILAPTREIAVQIHSVITAIGIKMEGL 122 (230)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTTC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEeCCHHHHHHHHHHHHHHhcccCCc
Confidence 59999999999988764 899999999999999766653 32 258999999999999999999998632 356
Q ss_pred cEEEEcCCcccc----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch-----HHHHHHHh
Q 010367 98 QICRFTSDSKER----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH-----MFRKVISL 168 (512)
Q Consensus 98 ~v~~~~~~~~~~----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~-----~~~~~l~~ 168 (512)
.+..+.|+.... ....++|+|+|++.+.....+ ..+....++++|+||||++... .+..++..
T Consensus 123 ~~~~~~g~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~--------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~i~~~ 194 (230)
T 2oxc_A 123 ECHVFIGGTPLSQDKTRLKKCHIAVGSPGRIKQLIEL--------DYLNPGSIRLFILDEADKLLEEGSFQEQINWIYSS 194 (230)
T ss_dssp CEEEECTTSCHHHHHHHTTSCSEEEECHHHHHHHHHT--------TSSCGGGCCEEEESSHHHHHSTTSSHHHHHHHHHH
T ss_pred eEEEEeCCCCHHHHHHhccCCCEEEECHHHHHHHHhc--------CCcccccCCEEEeCCchHhhcCcchHHHHHHHHHh
Confidence 788888865321 124689999999988653211 1111256789999999998543 34445555
Q ss_pred cc-cceEEEEcccCCC
Q 010367 169 TK-SHCKLGLTATLVR 183 (512)
Q Consensus 169 ~~-~~~~l~LTATp~~ 183 (512)
++ ..++++||||+..
T Consensus 195 ~~~~~~~l~lSAT~~~ 210 (230)
T 2oxc_A 195 LPASKQMLAVSATYPE 210 (230)
T ss_dssp SCSSCEEEEEESCCCH
T ss_pred CCCCCeEEEEEeccCH
Confidence 55 4578999999863
No 74
>3jux_A Protein translocase subunit SECA; protein translocation, ATPase, conformational change, peptide binding, ATP-binding, cell inner membrane; HET: ADP; 3.10A {Thermotoga maritima} PDB: 3din_A*
Probab=99.81 E-value=8.2e-20 Score=192.99 Aligned_cols=106 Identities=18% Similarity=0.169 Sum_probs=85.6
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.|+.++..++.... ..+.++||||+++..++.++..|. ..++||+..+.+|.-+.+.|+.+ .|+|+|++++
T Consensus 458 eK~~al~~~I~~~~-~~gqpVLVFt~S~e~sE~Ls~~L~~~Gi~~~vLhgkq~~rE~~ii~~ag~~g---~VtVATdmAg 533 (822)
T 3jux_A 458 EKYEKIVEEIEKRY-KKGQPVLVGTTSIEKSELLSSMLKKKGIPHQVLNAKYHEKEAEIVAKAGQKG---MVTIATNMAG 533 (822)
T ss_dssp HHHHHHHHHHHHHH-HHTCCEEEEESSHHHHHHHHHHHHTTTCCCEEECSCHHHHHHHHHHHHHSTT---CEEEEETTTT
T ss_pred HHHHHHHHHHHHHh-hCCCCEEEEECCHHHHHHHHHHHHHCCCCEEEeeCCchHHHHHHHHhCCCCC---eEEEEcchhh
Confidence 46777766665432 347899999999999999999993 34689986555555555666665 6999999999
Q ss_pred ccccCc--------cccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 326 NSIDIP--------EANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 326 ~GlDlp--------~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+|+|++ +..+||.++.|. |++.|.||+||+||.|.
T Consensus 534 RGtDI~lg~~V~~~GglhVInte~Pe-s~r~y~qriGRTGRqG~ 576 (822)
T 3jux_A 534 RGTDIKLGPGVAELGGLCIIGTERHE-SRRIDNQLRGRAGRQGD 576 (822)
T ss_dssp TTCCCCCCTTTTTTTSCEEEESSCCS-SHHHHHHHHTTSSCSSC
T ss_pred CCcCccCCcchhhcCCCEEEecCCCC-CHHHHHHhhCccccCCC
Confidence 999998 566999998886 99999999999999885
No 75
>3ly5_A ATP-dependent RNA helicase DDX18; alpha-beta, structural genomics, structural genomics consort ATP-binding, hydrolase, nucleotide-binding, RNA-B; 2.80A {Homo sapiens}
Probab=99.80 E-value=7.6e-20 Score=176.86 Aligned_cols=150 Identities=16% Similarity=0.112 Sum_probs=113.2
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----------cCCCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----------IKKSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----------~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
+|+|+|.++++.++.+. ++++++|||+|||++++.++.. .+.++||++|+++|+.||.+++.+++..
T Consensus 76 ~~~~~Q~~~i~~~~~~~---~~lv~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~~~~lil~Pt~~La~q~~~~~~~~~~~ 152 (262)
T 3ly5_A 76 NMTEIQHKSIRPLLEGR---DLLAAAKTGSGKTLAFLIPAVELIVKLRFMPRNGTGVLILSPTRELAMQTFGVLKELMTH 152 (262)
T ss_dssp BCCHHHHHHHHHHHHTC---CCEECCCTTSCHHHHHHHHHHHHHHHTTCCGGGCCCEEEECSSHHHHHHHHHHHHHHTTT
T ss_pred CCCHHHHHHHHHHhCCC---cEEEEccCCCCchHHHHHHHHHHHHhccccccCCceEEEEeCCHHHHHHHHHHHHHHHhh
Confidence 49999999999998874 8999999999999998777653 2467999999999999999999998765
Q ss_pred CCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHH
Q 010367 95 QDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKV 165 (512)
Q Consensus 95 ~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~ 165 (512)
....+..+.|+.... +....+|+|+|++.+.....+ ...+....++++|+||||++.+. .+..+
T Consensus 153 ~~~~~~~~~g~~~~~~~~~~~~~~~~Iiv~Tp~~l~~~~~~-------~~~~~~~~l~~lViDEah~l~~~~~~~~l~~i 225 (262)
T 3ly5_A 153 HVHTYGLIMGGSNRSAEAQKLGNGINIIVATPGRLLDHMQN-------TPGFMYKNLQCLVIDEADRILDVGFEEELKQI 225 (262)
T ss_dssp CCSCEEEECSSSCHHHHHHHHHHCCSEEEECHHHHHHHHHH-------CTTCCCTTCCEEEECSHHHHHHTTCHHHHHHH
T ss_pred cCceEEEEECCCCHHHHHHHhcCCCCEEEEcHHHHHHHHHc-------cCCcccccCCEEEEcChHHHhhhhHHHHHHHH
Confidence 556777777765421 224578999999988643111 01112256899999999998764 34555
Q ss_pred HHhcc-cceEEEEcccCCCC
Q 010367 166 ISLTK-SHCKLGLTATLVRE 184 (512)
Q Consensus 166 l~~~~-~~~~l~LTATp~~~ 184 (512)
+..++ ..++++||||+.+.
T Consensus 226 ~~~~~~~~q~l~~SAT~~~~ 245 (262)
T 3ly5_A 226 IKLLPTRRQTMLFSATQTRK 245 (262)
T ss_dssp HHHSCSSSEEEEECSSCCHH
T ss_pred HHhCCCCCeEEEEEecCCHH
Confidence 55554 35789999999743
No 76
>2hjv_A ATP-dependent RNA helicase DBPA; parallel alpha-beta, hydrolase; 1.95A {Bacillus subtilis}
Probab=99.80 E-value=8e-19 Score=157.09 Aligned_cols=107 Identities=21% Similarity=0.289 Sum_probs=96.1
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..|+..+..++.... +.++||||+++..++.++..| .+..+||++++.+|.++++.|+.+ .++|||+|+++
T Consensus 20 ~~K~~~L~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vlv~T~~~ 95 (163)
T 2hjv_A 20 ENKFSLLKDVLMTEN---PDSCIIFCRTKEHVNQLTDELDDLGYPCDKIHGGMIQEDRFDVMNEFKRG-EYRYLVATDVA 95 (163)
T ss_dssp GGHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEECGGG
T ss_pred HHHHHHHHHHHHhcC---CCcEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEECChh
Confidence 356677777776543 679999999999999999998 345799999999999999999997 89999999999
Q ss_pred cccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|+|++++||+++.|+ |+..|+||+||++|.|+
T Consensus 96 ~~Gld~~~~~~Vi~~~~p~-~~~~~~qr~GR~~R~g~ 131 (163)
T 2hjv_A 96 ARGIDIENISLVINYDLPL-EKESYVHRTGRTGRAGN 131 (163)
T ss_dssp TTTCCCSCCSEEEESSCCS-SHHHHHHHTTTSSCTTC
T ss_pred hcCCchhcCCEEEEeCCCC-CHHHHHHhccccCcCCC
Confidence 9999999999999998887 99999999999999984
No 77
>3bor_A Human initiation factor 4A-II; translation initiation, DEAD BOX, structural genomics, helic binding, HOST-virus interaction, hydrolase; 1.85A {Homo sapiens} PDB: 2g9n_A*
Probab=99.80 E-value=1.1e-19 Score=173.12 Aligned_cols=148 Identities=15% Similarity=0.090 Sum_probs=108.0
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhhCCCCCc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQ 98 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~ 98 (512)
.|+|||.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+++.++.......
T Consensus 52 ~~~~~Q~~ai~~i~~~~---~~li~apTGsGKT~~~~l~~l~~l~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~~ 128 (237)
T 3bor_A 52 KPSAIQQRAIIPCIKGY---DVIAQAQSGTGKTATFAISILQQLEIEFKETQALVLAPTRELAQQIQKVILALGDYMGAT 128 (237)
T ss_dssp SCCHHHHHHHHHHHTTC---CEEECCCSSHHHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTTTCC
T ss_pred CCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHHhcCCCceEEEEECcHHHHHHHHHHHHHHhhhcCce
Confidence 59999999999988764 89999999999999987777543 3589999999999999999999987554556
Q ss_pred EEEEcCCcccc-----c-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHHHHHHh
Q 010367 99 ICRFTSDSKER-----F-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFRKVISL 168 (512)
Q Consensus 99 v~~~~~~~~~~-----~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~~~l~~ 168 (512)
+..+.++.... + .+.++|+|+||+.+.....+ ..+....++++|+||||++... ....++..
T Consensus 129 ~~~~~g~~~~~~~~~~l~~~~~~Ilv~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~~~~~~~~~~l~~i~~~ 200 (237)
T 3bor_A 129 CHACIGGTNVRNEMQKLQAEAPHIVVGTPGRVFDMLNR--------RYLSPKWIKMFVLDEADEMLSRGFKDQIYEIFQK 200 (237)
T ss_dssp EEEECC-------------CCCSEEEECHHHHHHHHHT--------TSSCSTTCCEEEEESHHHHHHTTCHHHHHHHHHH
T ss_pred EEEEECCCchHHHHHHHhcCCCCEEEECHHHHHHHHHh--------CCcCcccCcEEEECCchHhhccCcHHHHHHHHHh
Confidence 66666653321 1 23478999999987643211 1112256899999999988654 33445555
Q ss_pred cc-cceEEEEcccCCC
Q 010367 169 TK-SHCKLGLTATLVR 183 (512)
Q Consensus 169 ~~-~~~~l~LTATp~~ 183 (512)
++ ..++++||||+..
T Consensus 201 ~~~~~~~i~~SAT~~~ 216 (237)
T 3bor_A 201 LNTSIQVVLLSATMPT 216 (237)
T ss_dssp SCTTCEEEEECSSCCH
T ss_pred CCCCCeEEEEEEecCH
Confidence 54 3578999999964
No 78
>2vl7_A XPD; helicase, unknown function; 2.25A {Sulfolobus tokodaii}
Probab=99.80 E-value=2.6e-18 Score=182.85 Aligned_cols=67 Identities=21% Similarity=0.272 Sum_probs=55.6
Q ss_pred CCCCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 23 HAQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.+++||+|.+++..+ +..+ +++++.+|||+|||++++.++.....+++|++||.+|+.|+.+++..+
T Consensus 5 ~~~~r~~Q~~~~~~v~~~~~~~--~~~~~~a~TGtGKT~~~l~~~~~~~~~~~~~~~t~~l~~q~~~~~~~l 74 (540)
T 2vl7_A 5 KLQLRQWQAEKLGEAINALKHG--KTLLLNAKPGLGKTVFVEVLGMQLKKKVLIFTRTHSQLDSIYKNAKLL 74 (540)
T ss_dssp ----CCHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHHHTCEEEEEESCHHHHHHHHHHHGGG
T ss_pred CCCCCHHHHHHHHHHHHHHHcC--CCEEEEcCCCCcHHHHHHHHHHhCCCcEEEEcCCHHHHHHHHHHHHhc
Confidence 468999999988765 3444 489999999999999999998888899999999999999999998874
No 79
>3dkp_A Probable ATP-dependent RNA helicase DDX52; DEAD, ADP, structural genomics, structural GEN consortium, SGC, rRNA, ATP-binding, hydrolase; HET: ADP; 2.10A {Homo sapiens}
Probab=99.79 E-value=1.4e-19 Score=173.08 Aligned_cols=151 Identities=17% Similarity=0.117 Sum_probs=108.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-c------CCCEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-I------KKSCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~------~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
..|+|+|.++++.++.+. ++++.+|||+|||++++.++.. + +.++||++|+++|+.||.+++.+++....
T Consensus 50 ~~~~~~Q~~~i~~~~~~~---~~l~~a~TGsGKT~~~~l~~l~~l~~~~~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~ 126 (245)
T 3dkp_A 50 QMPTPIQMQAIPVMLHGR---ELLASAPTGSGKTLAFSIPILMQLKQPANKGFRALIISPTRELASQIHRELIKISEGTG 126 (245)
T ss_dssp CSCCHHHHHHHHHHHTTC---CEEEECCTTSCHHHHHHHHHHHHHCSCCSSSCCEEEECSSHHHHHHHHHHHHHHTTTSC
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCCCcHHHHHHHHHHHHHhhcccCCceEEEEeCCHHHHHHHHHHHHHHhcccC
Confidence 369999999999988764 8999999999999998776643 2 23799999999999999999999876555
Q ss_pred CcEEEEcCCcc------ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc---hHH----H
Q 010367 97 DQICRFTSDSK------ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA---HMF----R 163 (512)
Q Consensus 97 ~~v~~~~~~~~------~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~---~~~----~ 163 (512)
..+..+.++.. ......++|+|+|++.+.....+.. ..+...+++++|+||||++.. ..| .
T Consensus 127 ~~~~~~~~~~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~~~------~~~~~~~~~~lViDEah~~~~~~~~~~~~~~~ 200 (245)
T 3dkp_A 127 FRIHMIHKAAVAAKKFGPKSSKKFDILVTTPNRLIYLLKQDP------PGIDLASVEWLVVDESDKLFEDGKTGFRDQLA 200 (245)
T ss_dssp CCEECCCHHHHHHTTTSTTSCCCCCEEEECHHHHHHHHHSSS------CSCCCTTCCEEEESSHHHHHHHC--CHHHHHH
T ss_pred ceEEEEecCccHHHHhhhhhcCCCCEEEECHHHHHHHHHhCC------CCcccccCcEEEEeChHHhcccccccHHHHHH
Confidence 56666554321 1124567899999998865321110 011125678999999999875 233 3
Q ss_pred HHHHhc--ccceEEEEcccCCC
Q 010367 164 KVISLT--KSHCKLGLTATLVR 183 (512)
Q Consensus 164 ~~l~~~--~~~~~l~LTATp~~ 183 (512)
.++..+ ...++++||||+..
T Consensus 201 ~i~~~~~~~~~~~~~~SAT~~~ 222 (245)
T 3dkp_A 201 SIFLACTSHKVRRAMFSATFAY 222 (245)
T ss_dssp HHHHHCCCTTCEEEEEESSCCH
T ss_pred HHHHhcCCCCcEEEEEeccCCH
Confidence 333332 23478999999964
No 80
>3fe2_A Probable ATP-dependent RNA helicase DDX5; DEAD, ADP, ATP-binding, hydrolase, nucleotide- RNA-binding, methylation, mRNA processing, mRNA S nucleus; HET: ADP; 2.60A {Homo sapiens} PDB: 4a4d_A
Probab=99.79 E-value=1.2e-19 Score=173.46 Aligned_cols=149 Identities=15% Similarity=0.101 Sum_probs=111.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc-----------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI-----------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~-----------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
..|+|+|.++++.++.+. ++++.+|||+|||++++.++... +.++||++|+++|+.||.+.+.++.
T Consensus 50 ~~~~~~Q~~~i~~~~~g~---~~l~~apTGsGKT~~~~l~~l~~l~~~~~~~~~~~~~~lil~Pt~~L~~Q~~~~~~~~~ 126 (242)
T 3fe2_A 50 TEPTAIQAQGWPVALSGL---DMVGVAQTGSGKTLSYLLPAIVHINHQPFLERGDGPICLVLAPTRELAQQVQQVAAEYC 126 (242)
T ss_dssp CSCCHHHHHHHHHHHHTC---CEEEEECTTSCHHHHHHHHHHHHHHTSCCCCTTCCCSEEEECSSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHhCCC---CEEEECCCcCHHHHHHHHHHHHHHHhccccccCCCCEEEEEeCcHHHHHHHHHHHHHHH
Confidence 359999999999988775 89999999999999987776432 3479999999999999999999886
Q ss_pred CCCCCcEEEEcCCcccc-----ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCch----HHH
Q 010367 93 TIQDDQICRFTSDSKER-----FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAH----MFR 163 (512)
Q Consensus 93 ~~~~~~v~~~~~~~~~~-----~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~----~~~ 163 (512)
......+..+.|+.... +...++|+|+|++.+.....+ ..+...+++++|+||||++... .+.
T Consensus 127 ~~~~~~~~~~~g~~~~~~~~~~~~~~~~I~v~Tp~~l~~~l~~--------~~~~~~~~~~lViDEah~l~~~~~~~~~~ 198 (242)
T 3fe2_A 127 RACRLKSTCIYGGAPKGPQIRDLERGVEICIATPGRLIDFLEC--------GKTNLRRTTYLVLDEADRMLDMGFEPQIR 198 (242)
T ss_dssp HHTTCCEEEECTTSCHHHHHHHHHHCCSEEEECHHHHHHHHHH--------TSCCCTTCCEEEETTHHHHHHTTCHHHHH
T ss_pred hhcCceEEEEECCCChHHHHHHhcCCCCEEEECHHHHHHHHHc--------CCCCcccccEEEEeCHHHHhhhCcHHHHH
Confidence 55555677777764321 234578999999988643211 1112257889999999998754 344
Q ss_pred HHHHhcc-cceEEEEcccCCC
Q 010367 164 KVISLTK-SHCKLGLTATLVR 183 (512)
Q Consensus 164 ~~l~~~~-~~~~l~LTATp~~ 183 (512)
.++..++ ..++++||||+..
T Consensus 199 ~i~~~~~~~~q~~~~SAT~~~ 219 (242)
T 3fe2_A 199 KIVDQIRPDRQTLMWSATWPK 219 (242)
T ss_dssp HHHTTSCSSCEEEEEESCCCH
T ss_pred HHHHhCCccceEEEEEeecCH
Confidence 5555553 3478999999864
No 81
>1t5i_A C_terminal domain of A probable ATP-dependent RNA helicase; RECA-like fold, PRE-mRNA processing protein; 1.90A {Homo sapiens} SCOP: c.37.1.19
Probab=99.79 E-value=1e-18 Score=157.83 Aligned_cols=107 Identities=17% Similarity=0.136 Sum_probs=96.5
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..|+..+..+++.. .+.++||||+++..++.++..| ++..+||++++.+|.++++.|+++ .++|||+|+++
T Consensus 16 ~~K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~hg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 91 (172)
T 1t5i_A 16 NEKNRKLFDLLDVL---EFNQVVIFVKSVQRCIALAQLLVEQNFPAIAIHRGMPQEERLSRYQQFKDF-QRRILVATNLF 91 (172)
T ss_dssp GGHHHHHHHHHHHS---CCSSEEEECSSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEESSCC
T ss_pred HHHHHHHHHHHHhC---CCCcEEEEECCHHHHHHHHHHHHhcCCCEEEEECCCCHHHHHHHHHHHHCC-CCcEEEECCch
Confidence 45667777777654 3679999999999999999998 345799999999999999999997 99999999999
Q ss_pred cccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|+|++++||+++.|+ |+..|+||+||++|.|+
T Consensus 92 ~~Gldi~~~~~Vi~~d~p~-~~~~~~qr~GR~~R~g~ 127 (172)
T 1t5i_A 92 GRGMDIERVNIAFNYDMPE-DSDTYLHRVARAGRFGT 127 (172)
T ss_dssp STTCCGGGCSEEEESSCCS-SHHHHHHHHHHHTGGGC
T ss_pred hcCcchhhCCEEEEECCCC-CHHHHHHHhcccccCCC
Confidence 9999999999999999887 99999999999999984
No 82
>2rb4_A ATP-dependent RNA helicase DDX25; rossmann fold, structural genomics, structural consortium, SGC, alternative initiation, ATP-binding, devel protein; 2.80A {Homo sapiens}
Probab=99.77 E-value=3.1e-18 Score=155.09 Aligned_cols=118 Identities=14% Similarity=0.248 Sum_probs=97.0
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcc
Q 010367 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (512)
Q Consensus 252 k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~ 326 (512)
|+..+..++... .+.++||||+++..++.++..|. +..+||++++.+|.++++.|+++ .++|||+|+++++
T Consensus 21 K~~~L~~ll~~~---~~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~R~~~~~~f~~g-~~~vLvaT~~~~~ 96 (175)
T 2rb4_A 21 KYQALCNIYGSI---TIGQAIIFCQTRRNAKWLTVEMIQDGHQVSLLSGELTVEQRASIIQRFRDG-KEKVLITTNVCAR 96 (175)
T ss_dssp HHHHHHHHHTTS---CCSEEEEECSCHHHHHHHHHHHHTTTCCEEEECSSCCHHHHHHHHHHHHTT-SCSEEEECCSCCT
T ss_pred HHHHHHHHHHhC---CCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEecchhc
Confidence 455666666443 46799999999999999999983 45799999999999999999997 8999999999999
Q ss_pred cccCccccEEEEecCCC-----CCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCc
Q 010367 327 SIDIPEANVIIQISSHA-----GSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDT 386 (512)
Q Consensus 327 GlDlp~~~~vI~~~~~~-----~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t 386 (512)
|+|+|++++||+++.|| .++..|+||+||++|.|+ .+.++.+++.+.
T Consensus 97 Gid~~~~~~Vi~~d~p~~~~~~~~~~~~~qr~GR~gR~g~-------------~g~~~~~~~~~~ 148 (175)
T 2rb4_A 97 GIDVKQVTIVVNFDLPVKQGEEPDYETYLHRIGRTGRFGK-------------KGLAFNMIEVDE 148 (175)
T ss_dssp TTCCTTEEEEEESSCCC--CCSCCHHHHHHHHCBC----C-------------CEEEEEEECGGG
T ss_pred CCCcccCCEEEEeCCCCCccccCCHHHHHHHhcccccCCC-------------CceEEEEEccch
Confidence 99999999999998883 489999999999999874 255677777655
No 83
>1fuk_A Eukaryotic initiation factor 4A; helicase, DEAD-box protein, translation; 1.75A {Saccharomyces cerevisiae} SCOP: c.37.1.19
Probab=99.77 E-value=1.9e-18 Score=154.90 Aligned_cols=118 Identities=19% Similarity=0.300 Sum_probs=99.4
Q ss_pred hHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC-----CCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcc
Q 010367 252 KFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR-----KPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGDN 326 (512)
Q Consensus 252 k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~-----~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~ 326 (512)
|...+..+++... +.++||||+++..++.++..|. +..+||++++.+|.++++.|+.+ +++|||+|+++++
T Consensus 17 K~~~l~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~~~~~~~~~~r~~~~~~f~~g-~~~vlv~T~~~~~ 92 (165)
T 1fuk_A 17 KYECLTDLYDSIS---VTQAVIFCNTRRKVEELTTKLRNDKFTVSAIYSDLPQQERDTIMKEFRSG-SSRILISTDLLAR 92 (165)
T ss_dssp HHHHHHHHHHHTT---CSCEEEEESSHHHHHHHHHHHHHTTCCEEEECTTSCHHHHHHHHHHHHTT-SCSEEEEEGGGTT
T ss_pred HHHHHHHHHHhCC---CCCEEEEECCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHcC-CCEEEEEcChhhc
Confidence 7778888887654 6799999999999999999983 45799999999999999999997 8999999999999
Q ss_pred cccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcH
Q 010367 327 SIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQ 387 (512)
Q Consensus 327 GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~ 387 (512)
|+|+|++++||+++.|+ |+..|.||+||++|.|+ . ..++.+++.+..
T Consensus 93 G~d~~~~~~Vi~~~~p~-~~~~~~qr~GR~gR~g~----------~---g~~~~~~~~~~~ 139 (165)
T 1fuk_A 93 GIDVQQVSLVINYDLPA-NKENYIHRIGRGGRFGR----------K---GVAINFVTNEDV 139 (165)
T ss_dssp TCCCCSCSEEEESSCCS-SGGGGGGSSCSCC------------------CEEEEEEETTTH
T ss_pred CCCcccCCEEEEeCCCC-CHHHHHHHhcccccCCC----------C---ceEEEEEcchHH
Confidence 99999999999998887 99999999999999984 2 345566766543
No 84
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=99.77 E-value=3.2e-18 Score=156.43 Aligned_cols=108 Identities=18% Similarity=0.220 Sum_probs=82.2
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..|+..+..++... .++.++||||+++..++.++..| .+..+||++++.+|.++++.|+.+ +++|||+|+++
T Consensus 30 ~~K~~~L~~ll~~~--~~~~k~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 106 (185)
T 2jgn_A 30 SDKRSFLLDLLNAT--GKDSLTLVFVETKKGADSLEDFLYHEGYACTSIHGDRSQRDREEALHQFRSG-KSPILVATAVA 106 (185)
T ss_dssp GGHHHHHHHHHHHC---CCSCEEEEESCHHHHHHHHHHHHHTTCCEEEEC--------CHHHHHHHHT-SSSEEEEEC--
T ss_pred HHHHHHHHHHHHhc--CCCCeEEEEECCHHHHHHHHHHHHHcCCceEEEeCCCCHHHHHHHHHHHHcC-CCeEEEEcChh
Confidence 34666777777654 25789999999999999999998 345799999999999999999997 89999999999
Q ss_pred cccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|+|++++||+++.|+ |+..|+||+||++|.|+
T Consensus 107 ~~Gldi~~~~~VI~~d~p~-s~~~~~Qr~GR~~R~g~ 142 (185)
T 2jgn_A 107 ARGLDISNVKHVINFDLPS-DIEEYVHRIGRTGRVGN 142 (185)
T ss_dssp ----CCCSBSEEEESSCCS-SHHHHHHHHTTBCCTTS
T ss_pred hcCCCcccCCEEEEeCCCC-CHHHHHHHccccCCCCC
Confidence 9999999999999998887 99999999999999984
No 85
>3eaq_A Heat resistant RNA dependent ATPase; DEAD box RNA helicase, dimer, ATP-binding, helicase, hydrolase, nucleotide-binding; 2.30A {Thermus thermophilus} PDB: 3ear_A 3eas_A
Probab=99.76 E-value=4.3e-18 Score=159.07 Aligned_cols=108 Identities=21% Similarity=0.323 Sum_probs=97.4
Q ss_pred CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCC
Q 010367 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (512)
Q Consensus 249 ~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~ 323 (512)
...|+.++..++.... +.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ .++|||+|++
T Consensus 15 ~~~k~~~l~~ll~~~~---~~~~lVF~~~~~~~~~l~~~L~~~~~~~~~lhg~~~~~~r~~~~~~f~~g-~~~vlvaT~~ 90 (212)
T 3eaq_A 15 VRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDLSQGERERVLGAFRQG-EVRVLVATDV 90 (212)
T ss_dssp TTSHHHHHHHHHHHHC---CSCEEEECSSHHHHHHHHHHHHHHTCCEEEECSSSCHHHHHHHHHHHHSS-SCCEEEECTT
T ss_pred HHHHHHHHHHHHHhCC---CCeEEEEeCCHHHHHHHHHHHHHcCCCEEEEECCCCHHHHHHHHHHHHCC-CCeEEEecCh
Confidence 3567788888887554 779999999999999999988 345799999999999999999997 9999999999
Q ss_pred CcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+++|+|+|++++||+++.|+ |+..|+||+||+||.|+
T Consensus 91 ~~~Gidi~~v~~Vi~~~~p~-~~~~~~qr~GR~gR~g~ 127 (212)
T 3eaq_A 91 AARGLDIPQVDLVVHYRLPD-RAEAYQHRSGRTGRAGR 127 (212)
T ss_dssp TTCSSSCCCBSEEEESSCCS-SHHHHHHHHTTBCCCC-
T ss_pred hhcCCCCccCcEEEECCCCc-CHHHHHHHhcccCCCCC
Confidence 99999999999999998887 99999999999999984
No 86
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=99.75 E-value=8.4e-18 Score=154.35 Aligned_cols=132 Identities=15% Similarity=0.233 Sum_probs=102.4
Q ss_pred chHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCc
Q 010367 251 NKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVGD 325 (512)
Q Consensus 251 ~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~ 325 (512)
.|+..+..++. ..+.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ +++|||+|++++
T Consensus 41 ~K~~~L~~~l~----~~~~~~lVF~~~~~~~~~l~~~L~~~g~~~~~lhg~~~~~~R~~~l~~F~~g-~~~vLvaT~~~~ 115 (191)
T 2p6n_A 41 AKMVYLLECLQ----KTPPPVLIFAEKKADVDAIHEYLLLKGVEAVAIHGGKDQEERTKAIEAFREG-KKDVLVATDVAS 115 (191)
T ss_dssp GHHHHHHHHHT----TSCSCEEEECSCHHHHHHHHHHHHHHTCCEEEECTTSCHHHHHHHHHHHHHT-SCSEEEECHHHH
T ss_pred HHHHHHHHHHH----hCCCCEEEEECCHHHHHHHHHHHHHcCCcEEEEeCCCCHHHHHHHHHHHhcC-CCEEEEEcCchh
Confidence 45555555553 33568999999999999999998 245799999999999999999997 899999999999
Q ss_pred ccccCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHHhc
Q 010367 326 NSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQ 402 (512)
Q Consensus 326 ~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~ 402 (512)
+|+|+|++++||+++.|+ |+..|+||+||++|.|+ . ...+.+++... +..+...-...|...
T Consensus 116 ~Gldi~~v~~VI~~d~p~-~~~~~~qr~GR~gR~g~----------~---g~~i~l~~~~~-~~~~~~~l~~~l~~~ 177 (191)
T 2p6n_A 116 KGLDFPAIQHVINYDMPE-EIENYVHRIGRTGCSGN----------T---GIATTFINKAC-DESVLMDLKALLLEA 177 (191)
T ss_dssp TTCCCCCCSEEEESSCCS-SHHHHHHHHTTSCC-------------C---CEEEEEECTTS-CHHHHHHHHHHHHHT
T ss_pred cCCCcccCCEEEEeCCCC-CHHHHHHHhCccccCCC----------C---cEEEEEEcCch-hHHHHHHHHHHHHHc
Confidence 999999999999998887 99999999999999984 2 34556666543 223334444455443
No 87
>3fmo_B ATP-dependent RNA helicase DDX19B; nuclear porin, nuclear pore complex, nucleocytoplasmic trans mRNA export, protein interaction, beta-propeller; HET: ADP; 2.51A {Homo sapiens}
Probab=99.72 E-value=1.2e-17 Score=164.45 Aligned_cols=152 Identities=18% Similarity=0.182 Sum_probs=109.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-cC-----CCEEEEEcChhhHHHHHHHHHHhhCC-CC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-IK-----KSCLCLATNAVSVDQWAFQFKLWSTI-QD 96 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-~~-----~~~Lvl~P~~~L~~Qw~~~~~~~~~~-~~ 96 (512)
..|+|+|.++++.++.+. .++.++++|||+|||++++.++.. +. .++|||+|+++|+.|+.+.+..+... +.
T Consensus 113 ~~pt~iQ~~ai~~il~~~-~~~~l~~a~TGsGKT~a~~lp~l~~l~~~~~~~~~lil~PtreLa~Q~~~~~~~l~~~~~~ 191 (300)
T 3fmo_B 113 NRPSKIQENALPLMLAEP-PQNLIAQSQSGTGKTAAFVLAMLSQVEPANKYPQCLCLSPTYELALQTGKVIEQMGKFYPE 191 (300)
T ss_dssp CSCCHHHHHHHHHHTSSS-CCCEEEECCTTSSHHHHHHHHHHHHCCTTSCSCCEEEECSSHHHHHHHHHHHHHHTTTSTT
T ss_pred CCCCHHHHHHHHHHHcCC-CCeEEEECCCCCCccHHHHHHHHHhhhccCCCceEEEEcCcHHHHHHHHHHHHHHHhhCCC
Confidence 478999999999988761 248999999999999998766643 32 26999999999999999999988653 34
Q ss_pred CcEEEEcCCccc--cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc-hHHH----HHHHhc
Q 010367 97 DQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA-HMFR----KVISLT 169 (512)
Q Consensus 97 ~~v~~~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~-~~~~----~~l~~~ 169 (512)
..+....++... ......+|+|+|++.|.....+. ..+....+.++|+||||++.. ..|. .++..+
T Consensus 192 ~~~~~~~~~~~~~~~~~~~~~IlV~TP~~l~~~l~~~-------~~~~l~~l~~lVlDEad~l~~~~~~~~~~~~i~~~~ 264 (300)
T 3fmo_B 192 LKLAYAVRGNKLERGQKISEQIVIGTPGTVLDWCSKL-------KFIDPKKIKVFVLDEADVMIATQGHQDQSIRIQRML 264 (300)
T ss_dssp CCEEEESTTCCCCTTCCCCCSEEEECHHHHHHHHTTT-------CCCCGGGCSEEEETTHHHHHHSTTHHHHHHHHHTTS
T ss_pred cEEEEEeCCccHhhhhcCCCCEEEECHHHHHHHHHhc-------CCCChhhceEEEEeCHHHHhhccCcHHHHHHHHHhC
Confidence 566666665432 12356789999999886442210 111125678999999999875 3343 344444
Q ss_pred cc-ceEEEEcccCCC
Q 010367 170 KS-HCKLGLTATLVR 183 (512)
Q Consensus 170 ~~-~~~l~LTATp~~ 183 (512)
+. .+++++|||+..
T Consensus 265 ~~~~q~i~~SAT~~~ 279 (300)
T 3fmo_B 265 PRNCQMLLFSATFED 279 (300)
T ss_dssp CTTCEEEEEESCCCH
T ss_pred CCCCEEEEEeccCCH
Confidence 33 478999999974
No 88
>3i32_A Heat resistant RNA dependent ATPase; RNA helicase, dimer, RNA recognition motif, ATP-BIND helicase, nucleotide-binding; 2.80A {Thermus thermophilus}
Probab=99.70 E-value=3.6e-17 Score=160.31 Aligned_cols=108 Identities=20% Similarity=0.324 Sum_probs=95.0
Q ss_pred CcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCC
Q 010367 249 NPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKV 323 (512)
Q Consensus 249 ~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~ 323 (512)
...|+.++..+++... +.++||||+++..++.++..| .+..+||++++.+|.++++.|+.+ .++|||+|++
T Consensus 12 ~~~K~~~L~~ll~~~~---~~~~LVF~~t~~~~~~l~~~L~~~g~~~~~lhg~l~~~~r~~~~~~f~~g-~~~vLVaT~v 87 (300)
T 3i32_A 12 VRGRLEVLSDLLYVAS---PDRAMVFTRTKAETEEIAQGLLRLGHPAQALHGDMSQGERERVMGAFRQG-EVRVLVATDV 87 (300)
T ss_dssp SSSHHHHHHHHHHHHC---CSSEEEECSSHHHHHHHHHHHHTTTCCEEEECSCCCTHHHHHHHHHHHHT-SCCEEEECST
T ss_pred HHHHHHHHHHHHHhcC---CCCEEEEECCHHHHHHHHHHHHhCCCCEEEEeCCCCHHHHHHHHHHhhcC-CceEEEEech
Confidence 4568888888887654 789999999999999999998 244699999999999999999998 9999999999
Q ss_pred CcccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 324 GDNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 324 ~~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
+++|+|+|++++||+++.|+ |+..|+||+||+||.|+
T Consensus 88 a~~Gidi~~v~~VI~~d~p~-s~~~y~Qr~GRagR~g~ 124 (300)
T 3i32_A 88 AARGLDIPQVDLVVHYRMPD-RAEAYQHRSGRTGRAGR 124 (300)
T ss_dssp TTCSTTCCCCSEEEESSCCS-STTHHHHHHTCCC----
T ss_pred hhcCccccceeEEEEcCCCC-CHHHHHHHccCcCcCCC
Confidence 99999999999999998887 99999999999999984
No 89
>2yjt_D ATP-dependent RNA helicase SRMB, regulator of ribonuclease activity A; hydrolase inhibitor-hydrolase complex, DEAD box RNA helicase; 2.90A {Escherichia coli}
Probab=99.53 E-value=1e-18 Score=157.47 Aligned_cols=107 Identities=21% Similarity=0.275 Sum_probs=95.6
Q ss_pred cchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHh-----CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeCCC
Q 010367 250 PNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKL-----RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSKVG 324 (512)
Q Consensus 250 ~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L-----~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~ 324 (512)
..|...+..+++.. .+.++||||+++..++.++..| .+..+||++++.+|.++++.|+++ +++|||+|+++
T Consensus 15 ~~k~~~l~~ll~~~---~~~~~iVF~~~~~~~~~l~~~L~~~~~~~~~~~g~~~~~~r~~~~~~f~~g-~~~vLvaT~~~ 90 (170)
T 2yjt_D 15 EHKTALLVHLLKQP---EATRSIVFVRKRERVHELANWLREAGINNCYLEGEMVQGKRNEAIKRLTEG-RVNVLVATDVA 90 (170)
Confidence 45666777777543 3679999999999999999998 355799999999999999999997 89999999999
Q ss_pred cccccCccccEEEEecCCCCCHHHHHHHhhcccccCC
Q 010367 325 DNSIDIPEANVIIQISSHAGSRRQEAQRLGRILRAKG 361 (512)
Q Consensus 325 ~~GlDlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~ 361 (512)
++|+|+|++++||+++.|+ |+..|+||+||++|.|+
T Consensus 91 ~~Gid~~~~~~Vi~~~~p~-~~~~~~qr~GR~~R~g~ 126 (170)
T 2yjt_D 91 ARGIDIPDVSHVFNFDMPR-SGDTYLHRIGRTARAGR 126 (170)
Confidence 9999999999999998887 99999999999999884
No 90
>3crv_A XPD/RAD3 related DNA helicase; XPD helicase DNA repair cancer aging, hydrolase; HET: FLC; 2.00A {Sulfolobus acidocaldarius} PDB: 3crw_1*
Probab=99.69 E-value=1e-14 Score=155.76 Aligned_cols=126 Identities=18% Similarity=0.171 Sum_probs=92.7
Q ss_pred CCCcHHHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEE
Q 010367 24 AQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQIC 100 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~ 100 (512)
+++||+|.+.+..+. ..+ +++++.+|||+|||++++.++.....+++|++||++|+.|+.+++..+......++.
T Consensus 2 ~~~r~~Q~~~~~~v~~~l~~~--~~~~~~a~TGtGKT~~~l~p~l~~~~~v~i~~pt~~l~~q~~~~~~~l~~~~~~~~~ 79 (551)
T 3crv_A 2 VKLRDWQEKLKDKVIEGLRNN--FLVALNAPTGSGKTLFSLLVSLEVKPKVLFVVRTHNEFYPIYRDLTKIREKRNITFS 79 (551)
T ss_dssp CSCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSSHHHHHHHHHHHHCSEEEEEESSGGGHHHHHHHHTTCCCSSCCCEE
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CcEEEECCCCccHHHHHHHHHHhCCCeEEEEcCCHHHHHHHHHHHHHHhhhcCccEE
Confidence 579999999887653 344 489999999999999999998888889999999999999999999886433344555
Q ss_pred EEcCCcc--------------------------------------------------------ccccCCCeEEEEchhhh
Q 010367 101 RFTSDSK--------------------------------------------------------ERFRGNAGVVVTTYNMV 124 (512)
Q Consensus 101 ~~~~~~~--------------------------------------------------------~~~~~~~~Ivv~T~~~l 124 (512)
.+.|... ......++|+|+||+.|
T Consensus 80 ~l~gr~~~c~~~~~~~~~~~~~c~~c~~~~~~~~~g~~~~~~~~~~~~~~~G~~~~~Cpy~~ar~~~~~adIVV~~~~~l 159 (551)
T 3crv_A 80 FLVGKPSSCLYAEKGAESEDIPCKYCELKGSIVEVKTDDSPLSLVKKLKKDGLQDKFCPYYSLLNSLYKADVIALTYPYF 159 (551)
T ss_dssp ECCCHHHHCTTBCTTCCGGGCCGGGCTTTTCCCCCCCCSCHHHHHHHHHHHHHHHTCCHHHHHHHHGGGCSEEEEETHHH
T ss_pred EEccccccCcCchhcCCCcccccCCCCCccccccccccCCHHHHHHHHHHcCCcCCcCccHHHHhhhhcCCEEEeCchHh
Confidence 5555211 00113579999999998
Q ss_pred hccCCCchhHHHHHHHHh-cCCccEEEEcCCCCCCc
Q 010367 125 AFGGKRSEESEKIIEEIR-NREWGLLLMDEVHVVPA 159 (512)
Q Consensus 125 ~~~~~r~~~~~~~~~~l~-~~~~~lvIiDEaH~~~~ 159 (512)
.....+ ..+. .....++||||||++..
T Consensus 160 ~~~~~~--------~~~~~~~~~~~vIiDEAHnl~d 187 (551)
T 3crv_A 160 FIDRYR--------EFIDIDLREYMIVIDEAHNLDK 187 (551)
T ss_dssp HCHHHH--------TTSCCCSTTEEEEETTGGGGGG
T ss_pred cCHHHH--------HhcCCCcCCeEEEEecccchHH
Confidence 753111 1111 13556899999999875
No 91
>2ipc_A Preprotein translocase SECA subunit; nucleotide binding fold, ATPase, parallel dimer; 2.80A {Thermus thermophilus}
Probab=99.63 E-value=1.1e-14 Score=156.94 Aligned_cols=130 Identities=16% Similarity=0.029 Sum_probs=90.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
.+.++|.|..++..++.+. |..+.||+|||+++..++. ..++.++|++||..|+.|-.+.+..++..-...+
T Consensus 77 G~~Pt~VQ~~~ip~LlqG~-----IaeakTGeGKTLvf~Lp~~L~aL~G~qv~VvTPTreLA~Qdae~m~~l~~~lGLsv 151 (997)
T 2ipc_A 77 GMRHFDVQLIGGAVLHEGK-----IAEMKTGEGKTLVATLAVALNALTGKGVHVVTVNDYLARRDAEWMGPVYRGLGLSV 151 (997)
T ss_dssp CCCCCHHHHHHHHHHHTTS-----EEECCSTHHHHHHHHHHHHHHHTTCSCCEEEESSHHHHHHHHHHHHHHHHTTTCCE
T ss_pred CCCCcHHHHhhcccccCCc-----eeeccCCCchHHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHHHHHhcCCeE
Confidence 3588999999999877652 8899999999999877773 2356899999999999998877777665555678
Q ss_pred EEEcCCcccc---ccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcC---CccEEEEcCCCCCC
Q 010367 100 CRFTSDSKER---FRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNR---EWGLLLMDEVHVVP 158 (512)
Q Consensus 100 ~~~~~~~~~~---~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~---~~~lvIiDEaH~~~ 158 (512)
+.+.|+.... ....++|+|+|++.|....-+.+.. ...+.+... .+.++|+||+|.+.
T Consensus 152 ~~i~Gg~~~~~r~~ay~~DIvyGTpgrlgfDyLrd~m~-~~~~~l~~r~d~~l~~lIIDEaDsmL 215 (997)
T 2ipc_A 152 GVIQHASTPAERRKAYLADVTYVTNSELGFDYLRDNMA-ISPDQLVLRHDHPLHYAIIDEVDSIL 215 (997)
T ss_dssp EECCTTCCHHHHHHHHTSSEEEEEHHHHHHHHHHHTSC-SSTTTCCSCSSSSSCEEEETTHHHHT
T ss_pred EEEeCCCCHHHHHHHcCCCEEEECchhhhhHHHHHhhh-cchhhcccccCCCcceEEEechHHHH
Confidence 8888775421 2245899999999873110000000 000011124 78899999999654
No 92
>3llm_A ATP-dependent RNA helicase A; alpha-beta-alpha, structural genomics, structural genomics consortium, SGC, activator, ATP-binding, DNA-binding; HET: ADP; 2.80A {Homo sapiens}
Probab=99.58 E-value=2.3e-14 Score=135.89 Aligned_cols=145 Identities=14% Similarity=0.059 Sum_probs=101.5
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cC----CCEEEEEcChhhHHHHHHHHHHhhCCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IK----KSCLCLATNAVSVDQWAFQFKLWSTIQ 95 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~----~~~Lvl~P~~~L~~Qw~~~~~~~~~~~ 95 (512)
..++++|.+++..+..+. ..++.+|||+|||.+...++.. .+ ..+++++|+++++.|..+.+...++..
T Consensus 60 ~p~~~~q~~~i~~i~~g~---~~~i~g~TGsGKTt~~~~~~~~~~~~~~~~~~~~~l~~~p~~~la~q~~~~~~~~~~~~ 136 (235)
T 3llm_A 60 LPVKKFESEILEAISQNS---VVIIRGATGCGKTTQVPQFILDDFIQNDRAAECNIVVTQPRRISAVSVAERVAFERGEE 136 (235)
T ss_dssp SGGGGGHHHHHHHHHHCS---EEEEECCTTSSHHHHHHHHHHHHHHHTTCGGGCEEEEEESSHHHHHHHHHHHHHTTTCC
T ss_pred CChHHHHHHHHHHHhcCC---EEEEEeCCCCCcHHhHHHHHhcchhhcCCCCceEEEEeccchHHHHHHHHHHHHHhccc
Confidence 568899999999988775 8999999999999765555432 12 279999999999999999998876543
Q ss_pred CC-cEEEEcCCccccc-cCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC-chH-----HHHHHH
Q 010367 96 DD-QICRFTSDSKERF-RGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP-AHM-----FRKVIS 167 (512)
Q Consensus 96 ~~-~v~~~~~~~~~~~-~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~-~~~-----~~~~l~ 167 (512)
.. .++. .-...... ....+|+|+|++++.... ... ..+++++|+||||... ... .+.++.
T Consensus 137 ~~~~~g~-~~~~~~~~~~~~~~Ivv~Tpg~l~~~l---------~~~--l~~~~~lVlDEah~~~~~~~~~~~~l~~i~~ 204 (235)
T 3llm_A 137 PGKSCGY-SVRFESILPRPHASIMFCTVGVLLRKL---------EAG--IRGISHVIVDEIHERDINTDFLLVVLRDVVQ 204 (235)
T ss_dssp TTSSEEE-EETTEEECCCSSSEEEEEEHHHHHHHH---------HHC--CTTCCEEEECCTTSCCHHHHHHHHHHHHHHH
T ss_pred cCceEEE-eechhhccCCCCCeEEEECHHHHHHHH---------Hhh--hcCCcEEEEECCccCCcchHHHHHHHHHHHh
Confidence 22 2322 21211111 256889999999886431 112 3678999999999863 322 233444
Q ss_pred hcccceEEEEcccCCC
Q 010367 168 LTKSHCKLGLTATLVR 183 (512)
Q Consensus 168 ~~~~~~~l~LTATp~~ 183 (512)
..+..+++++|||+..
T Consensus 205 ~~~~~~~il~SAT~~~ 220 (235)
T 3llm_A 205 AYPEVRIVLMSATIDT 220 (235)
T ss_dssp HCTTSEEEEEECSSCC
T ss_pred hCCCCeEEEEecCCCH
Confidence 4455678999999964
No 93
>4a15_A XPD helicase, ATP-dependent DNA helicase TA0057; hydrolase, nucleotide excision repair,; 2.20A {Thermoplasma acidophilum} PDB: 2vsf_A*
Probab=99.46 E-value=3.5e-12 Score=137.36 Aligned_cols=67 Identities=19% Similarity=0.293 Sum_probs=54.0
Q ss_pred CCCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 24 AQPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
+++||+|.+.+..+ +.++ +++++.+|||+|||+.++.++... +.+++|++||.++..|+.+++..+.
T Consensus 2 ~~~R~~Q~~~~~~v~~~l~~~--~~~~~~apTGtGKT~a~l~p~l~~~~~~~~kvli~t~T~~l~~Qi~~el~~l~ 75 (620)
T 4a15_A 2 YENRQYQVEAIDFLRSSLQKS--YGVALESPTGSGKTIMALKSALQYSSERKLKVLYLVRTNSQEEQVIKELRSLS 75 (620)
T ss_dssp ---CHHHHHHHHHHHHHHHHS--SEEEEECCTTSCHHHHHHHHHHHHHHHHTCEEEEEESSHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHcC--CCEEEECCCCCCHHHHHHHHHHHhhhhcCCeEEEECCCHHHHHHHHHHHHHHh
Confidence 57899999999865 3344 389999999999999988776443 6799999999999999999988754
No 94
>3hgt_A HDA1 complex subunit 3; RECA-like domain, SWI2/SNF2 helical domain, chromatin regulator, coiled coil, nucleus, repressor, transcription; 2.20A {Saccharomyces cerevisiae} PDB: 3hgq_A
Probab=99.32 E-value=4.3e-12 Score=123.33 Aligned_cols=127 Identities=15% Similarity=0.078 Sum_probs=95.4
Q ss_pred cCcchHHHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhCC-----CceeCCCCHHHHHHHHHHhhCCCCccEEEEeC
Q 010367 248 MNPNKFRACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLRK-----PMIYGATSHVERTKILQAFKCSRDLNTIFLSK 322 (512)
Q Consensus 248 ~~~~k~~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~~-----~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~ 322 (512)
..++|+.++..|+.... ..|+|++|||+++..++.+..++.. ..++|.+...+ .+. .+ ..+.+.+.|.
T Consensus 106 ~~SGKf~~L~~LL~~l~-~~~~kVLIfsq~t~~LDilE~~l~~~~~~y~RlDG~~~~~~-~k~----~~-~~~~i~Llts 178 (328)
T 3hgt_A 106 ENSGKFSVLRDLINLVQ-EYETETAIVCRPGRTMDLLEALLLGNKVHIKRYDGHSIKSA-AAA----ND-FSCTVHLFSS 178 (328)
T ss_dssp HTCHHHHHHHHHHHHHT-TSCEEEEEEECSTHHHHHHHHHHTTSSCEEEESSSCCC------------C-CSEEEEEEES
T ss_pred HcCccHHHHHHHHHHHH-hCCCEEEEEECChhHHHHHHHHHhcCCCceEeCCCCchhhh-hhc----cc-CCceEEEEEC
Confidence 37899999999999888 7899999999999999999999942 34788865432 111 12 3566666688
Q ss_pred CCccccc-----CccccEEEEecCCCCCHHHH-HHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHH
Q 010367 323 VGDNSID-----IPEANVIIQISSHAGSRRQE-AQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFY 391 (512)
Q Consensus 323 ~~~~GlD-----lp~~~~vI~~~~~~~s~~~~-~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~ 391 (512)
+|+-|+| +..+++||.+|+.| |+... +|++.|+||.+++ +++.+.+|+|++.+|+|+..
T Consensus 179 ag~~gin~~~~nl~~aD~VI~~Dsdw-Np~~d~iQa~~r~~R~~~g---------q~k~v~V~RLvt~~TiEh~~ 243 (328)
T 3hgt_A 179 EGINFTKYPIKSKARFDMLICLDTTV-DTSQKDIQYLLQYKRERKG---------LERYAPIVRLVAINSIDHCR 243 (328)
T ss_dssp SCCCTTTSCCCCCSCCSEEEECSTTC-CTTSHHHHHHHCCC------------------CCEEEEEETTSHHHHH
T ss_pred CCCCCcCcccccCCCCCEEEEECCCC-CCCChHHHHHHHHhhhccC---------CCCcceEEEEeCCCCHHHHH
Confidence 8888886 78999999999998 88886 9999999999643 56789999999999999944
No 95
>3e1s_A Exodeoxyribonuclease V, subunit RECD; alpha and beta protein, ATP-binding, nucleotide-binding, HYD; 2.20A {Deinococcus radiodurans} PDB: 3gp8_A 3gpl_A*
Probab=98.39 E-value=1.8e-06 Score=91.88 Aligned_cols=128 Identities=12% Similarity=0.039 Sum_probs=87.6
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH---hcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC---RIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQI 99 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~---~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v 99 (512)
...|.+.|.+++..++.++ ..+|.+++|+|||.+...++. ..+.++++++||...+....+.. +.. .
T Consensus 187 ~~~L~~~Q~~Av~~~~~~~---~~~I~G~pGTGKTt~i~~l~~~l~~~g~~Vl~~ApT~~Aa~~L~e~~----~~~---a 256 (574)
T 3e1s_A 187 RKGLSEEQASVLDQLAGHR---LVVLTGGPGTGKSTTTKAVADLAESLGLEVGLCAPTGKAARRLGEVT----GRT---A 256 (574)
T ss_dssp TTTCCHHHHHHHHHHTTCS---EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHH----TSC---E
T ss_pred cCCCCHHHHHHHHHHHhCC---EEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEecCcHHHHHHhHhhh----ccc---H
Confidence 5678999999999988664 889999999999988766554 34679999999998666544322 211 1
Q ss_pred EEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcc
Q 010367 100 CRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTA 179 (512)
Q Consensus 100 ~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTA 179 (512)
..++.-... .. + .+..... ....++++||||+|.+....+..++..++...++.|.|
T Consensus 257 ~Tih~ll~~--~~-------~--~~~~~~~------------~~~~~dvlIIDEasml~~~~~~~Ll~~~~~~~~lilvG 313 (574)
T 3e1s_A 257 STVHRLLGY--GP-------Q--GFRHNHL------------EPAPYDLLIVDEVSMMGDALMLSLLAAVPPGARVLLVG 313 (574)
T ss_dssp EEHHHHTTE--ET-------T--EESCSSS------------SCCSCSEEEECCGGGCCHHHHHHHHTTSCTTCEEEEEE
T ss_pred HHHHHHHcC--Cc-------c--hhhhhhc------------ccccCCEEEEcCccCCCHHHHHHHHHhCcCCCEEEEEe
Confidence 111110000 00 0 0000000 01467899999999999999998998888788899999
Q ss_pred cCCC
Q 010367 180 TLVR 183 (512)
Q Consensus 180 Tp~~ 183 (512)
-|.+
T Consensus 314 D~~Q 317 (574)
T 3e1s_A 314 DTDQ 317 (574)
T ss_dssp CTTS
T ss_pred cccc
Confidence 8875
No 96
>2gk6_A Regulator of nonsense transcripts 1; UPF1, helicase, NMD, hydrolase; HET: ADP; 2.40A {Homo sapiens} PDB: 2gjk_A* 2gk7_A 2xzo_A* 2xzp_A
Probab=98.31 E-value=1.5e-05 Score=85.96 Aligned_cols=65 Identities=17% Similarity=0.218 Sum_probs=54.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..|.+.|.+|+..++.++ ..+|.+|+|+|||.+...++..+ +.++|+++|+...+++..+.+...
T Consensus 179 ~~ln~~Q~~av~~~l~~~---~~li~GppGTGKT~~~~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 247 (624)
T 2gk6_A 179 PDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 247 (624)
T ss_dssp CCCCHHHHHHHHHHHTCS---EEEEECCTTSCHHHHHHHHHHHHHTSSSCCEEEEESSHHHHHHHHHHHHTT
T ss_pred CCCCHHHHHHHHHHhcCC---CeEEECCCCCCHHHHHHHHHHHHHHcCCCeEEEEeCcHHHHHHHHHHHHhc
Confidence 468999999999988654 78999999999999977766543 468999999999999988888764
No 97
>4b3f_X DNA-binding protein smubp-2; hydrolase, helicase; 2.50A {Homo sapiens} PDB: 4b3g_A
Probab=98.29 E-value=1.7e-06 Score=93.78 Aligned_cols=66 Identities=21% Similarity=0.236 Sum_probs=55.8
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..|-+.|.+|+..++.... -.+|.+|+|+|||.+.+.++..+ +.++||++||...+++..+.+...
T Consensus 188 ~~LN~~Q~~AV~~al~~~~--~~lI~GPPGTGKT~ti~~~I~~l~~~~~~ILv~a~TN~AvD~i~erL~~~ 256 (646)
T 4b3f_X 188 TCLDTSQKEAVLFALSQKE--LAIIHGPPGTGKTTTVVEIILQAVKQGLKVLCCAPSNIAVDNLVERLALC 256 (646)
T ss_dssp TTCCHHHHHHHHHHHHCSS--EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEESSHHHHHHHHHHHHHT
T ss_pred CCCCHHHHHHHHHHhcCCC--ceEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEcCchHHHHHHHHHHHhc
Confidence 4689999999999987542 68999999999999987777543 679999999999999998888764
No 98
>1w36_D RECD, exodeoxyribonuclease V alpha chain; recombination, helicase, hydrolase, DNA repair; HET: DNA; 3.1A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19 PDB: 3k70_D*
Probab=98.23 E-value=2.3e-06 Score=91.96 Aligned_cols=139 Identities=13% Similarity=0.104 Sum_probs=85.9
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh-------cCCCEEEEEcChhhHHHHHHHHHHhh---CCCC
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR-------IKKSCLCLATNAVSVDQWAFQFKLWS---TIQD 96 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~-------~~~~~Lvl~P~~~L~~Qw~~~~~~~~---~~~~ 96 (512)
-+.|++|+..++.++ ..++.+++|+|||.+...++.. .+.++++++||..++.+..+.+..+. ++..
T Consensus 151 ~~~Q~~Ai~~~l~~~---~~vi~G~pGTGKTt~l~~ll~~l~~~~~~~~~~vll~APTg~AA~~L~e~~~~~~~~l~l~~ 227 (608)
T 1w36_D 151 INWQKVAAAVALTRR---ISVISGGPGTGKTTTVAKLLAALIQMADGERCRIRLAAPTGKAAARLTESLGKALRQLPLTD 227 (608)
T ss_dssp CCHHHHHHHHHHTBS---EEEEECCTTSTHHHHHHHHHHHHHHTCSSCCCCEEEEBSSHHHHHHHHHHHTHHHHHSSCCS
T ss_pred CHHHHHHHHHHhcCC---CEEEEeCCCCCHHHHHHHHHHHHHHhhhcCCCeEEEEeCChhHHHHHHHHHHHHHhcCCCCH
Confidence 578999999988664 8999999999999765444322 13489999999999998887766542 2211
Q ss_pred CcEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHH-HHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEE
Q 010367 97 DQICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKI-IEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKL 175 (512)
Q Consensus 97 ~~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~-~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l 175 (512)
.. .... ..-..|...+....-. ...+ ........++++|||||+.+..+.+..++..++...++
T Consensus 228 ~~--------~~~~----~~~~~Tih~ll~~~~~---~~~~~~~~~~~l~~d~lIIDEAsml~~~~~~~Ll~~l~~~~~l 292 (608)
T 1w36_D 228 EQ--------KKRI----PEDASTLHRLLGAQPG---SQRLRHHAGNPLHLDVLVVDEASMIDLPMMSRLIDALPDHARV 292 (608)
T ss_dssp CC--------CCSC----SCCCBTTTSCC--------------CTTSCCSCSEEEECSGGGCBHHHHHHHHHTCCTTCEE
T ss_pred HH--------Hhcc----chhhhhhHhhhccCCC---chHHHhccCCCCCCCEEEEechhhCCHHHHHHHHHhCCCCCEE
Confidence 00 0000 0001122211110000 0000 00001136789999999988877888888888887888
Q ss_pred EEcccCCC
Q 010367 176 GLTATLVR 183 (512)
Q Consensus 176 ~LTATp~~ 183 (512)
.|-|-|.+
T Consensus 293 iLvGD~~Q 300 (608)
T 1w36_D 293 IFLGDRDQ 300 (608)
T ss_dssp EEEECTTS
T ss_pred EEEcchhh
Confidence 88887754
No 99
>2xzl_A ATP-dependent helicase NAM7; hydrolase-RNA complex, NMD, RNA degradation, allosteric REGU; HET: ADP 1PE; 2.40A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.4e-05 Score=88.31 Aligned_cols=65 Identities=25% Similarity=0.300 Sum_probs=54.9
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..|.+.|.+|+..++.++ ..+|.+|+|+|||.+...++.. .+.++|+++|+...+++..+.+...
T Consensus 359 ~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~~i~~~i~~l~~~~~~~ILv~a~tn~A~d~l~~rL~~~ 427 (802)
T 2xzl_A 359 AQLNSSQSNAVSHVLQRP---LSLIQGPPGTGKTVTSATIVYHLSKIHKDRILVCAPSNVAVDHLAAKLRDL 427 (802)
T ss_dssp CCCCHHHHHHHHHHTTCS---EEEEECSTTSSHHHHHHHHHHHHHHHHCCCEEEEESSHHHHHHHHHHHHHT
T ss_pred ccCCHHHHHHHHHHhcCC---CEEEECCCCCCHHHHHHHHHHHHHhCCCCeEEEEcCcHHHHHHHHHHHHhh
Confidence 468899999999987654 6899999999999987766643 3579999999999999999888764
No 100
>3upu_A ATP-dependent DNA helicase DDA; RECA-like domain, SH3 domain, PIN-tower interface, coupling hydrolysis to DNA unwinding, ssDNA; 3.30A {Enterobacteria phage T4}
Probab=98.18 E-value=9.2e-06 Score=84.29 Aligned_cols=136 Identities=11% Similarity=0.050 Sum_probs=85.3
Q ss_pred CCCCcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHhc---CC-CEEEEEcChhhHHHHHHHHHHhhCCCC
Q 010367 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACRI---KK-SCLCLATNAVSVDQWAFQFKLWSTIQD 96 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~~---~~-~~Lvl~P~~~L~~Qw~~~~~~~~~~~~ 96 (512)
--.|.+.|++++..++.. ...+..+|.++.|+|||.+...++..+ +. ++++++|+...+......+ +..
T Consensus 23 ~~~Ln~~Q~~av~~~~~~i~~~~~~~li~G~aGTGKT~ll~~~~~~l~~~~~~~il~~a~T~~Aa~~l~~~~----~~~- 97 (459)
T 3upu_A 23 FDDLTEGQKNAFNIVMKAIKEKKHHVTINGPAGTGATTLTKFIIEALISTGETGIILAAPTHAAKKILSKLS----GKE- 97 (459)
T ss_dssp SSCCCHHHHHHHHHHHHHHHSSSCEEEEECCTTSCHHHHHHHHHHHHHHTTCCCEEEEESSHHHHHHHHHHH----SSC-
T ss_pred cccCCHHHHHHHHHHHHHHhcCCCEEEEEeCCCCCHHHHHHHHHHHHHhcCCceEEEecCcHHHHHHHHhhh----ccc-
Confidence 347999999999987543 111388999999999999876666544 33 7999999987665544333 211
Q ss_pred CcEEEEcCCccc--cccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceE
Q 010367 97 DQICRFTSDSKE--RFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCK 174 (512)
Q Consensus 97 ~~v~~~~~~~~~--~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~ 174 (512)
+..+++-... ........+..... .. ...++++|+||+|.+....+..++..+.....
T Consensus 98 --~~T~h~~~~~~~~~~~~~~~~~~~~~----------------~~--~~~~~~iiiDE~~~~~~~~~~~l~~~~~~~~~ 157 (459)
T 3upu_A 98 --ASTIHSILKINPVTYEENVLFEQKEV----------------PD--LAKCRVLICDEVSMYDRKLFKILLSTIPPWCT 157 (459)
T ss_dssp --EEEHHHHHTEEEEECSSCEEEEECSC----------------CC--CSSCSEEEESCGGGCCHHHHHHHHHHSCTTCE
T ss_pred --hhhHHHHhccCcccccccchhccccc----------------cc--ccCCCEEEEECchhCCHHHHHHHHHhccCCCE
Confidence 1222111000 00001111111100 00 14678999999999998888888888776778
Q ss_pred EEEcccCCC
Q 010367 175 LGLTATLVR 183 (512)
Q Consensus 175 l~LTATp~~ 183 (512)
+.+.|-|.+
T Consensus 158 ~~~vGD~~Q 166 (459)
T 3upu_A 158 IIGIGDNKQ 166 (459)
T ss_dssp EEEEECTTS
T ss_pred EEEECCHHH
Confidence 888887765
No 101
>2wjy_A Regulator of nonsense transcripts 1; nonsense mediated decay, zinc-finger, ATP-binding, metal-BIN UPF2, UPF1, helicase, hydrolase; 2.50A {Homo sapiens} PDB: 2wjv_A 2iyk_A
Probab=98.10 E-value=4.1e-05 Score=84.42 Aligned_cols=66 Identities=17% Similarity=0.205 Sum_probs=54.7
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHHHh
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
...|.+.|.+|+..++.++ ..+|.+|+|+|||.+...++..+ +.++|+++||...+++..+.+...
T Consensus 354 ~~~Ln~~Q~~Av~~~l~~~---~~lI~GppGTGKT~ti~~~i~~l~~~~~~~ilv~a~tn~A~~~l~~~l~~~ 423 (800)
T 2wjy_A 354 LPDLNHSQVYAVKTVLQRP---LSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQT 423 (800)
T ss_dssp SCCCCHHHHHHHHHHHTSS---EEEEECCTTSCHHHHHHHHHHHHHTTCSSCEEEEESSHHHHHHHHHHHHTT
T ss_pred ccCCCHHHHHHHHHhccCC---eEEEEcCCCCCHHHHHHHHHHHHHHcCCCcEEEEcCcHHHHHHHHHHHHHh
Confidence 3468999999999988754 78999999999999877666542 468999999999899888887653
No 102
>2o0j_A Terminase, DNA packaging protein GP17; nucleotide-binding fold, hydrolase; HET: DNA ADP; 1.80A {Enterobacteria phage T4} PDB: 2o0h_A* 2o0k_A*
Probab=97.76 E-value=0.00043 Score=69.48 Aligned_cols=142 Identities=15% Similarity=0.176 Sum_probs=87.0
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh---c--CCCEEEEEcChhhHHHHHHHHHHhhCCCCC-
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR---I--KKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~--~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~- 97 (512)
+.|.|||+..+..+... +..++..+-+.|||.++...+.. . +..+++++|+..-+..+.+.+..+....+.
T Consensus 162 ~~L~p~Qk~il~~l~~~---R~~vi~~sRq~GKT~l~a~~~l~~a~~~~g~~v~~vA~t~~qA~~vf~~i~~mi~~~P~l 238 (385)
T 2o0j_A 162 VQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (385)
T ss_dssp CCCCHHHHHHHHHHHHS---SEEEEEECSSSCHHHHHHHHHHHHHHSSSSCEEEEEESSHHHHHHHHHHHHHHHHHSCTT
T ss_pred CCCCHHHHHHHHhhccC---cEEEEEEcCcCChhHHHHHHHHHHHHhCCCCeEEEEeCCHHHHHHHHHHHHHHHHhChHh
Confidence 68999999999876532 36889999999999986555432 1 347999999998777666777765432111
Q ss_pred ---cEEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc--hHHHHHHHhcc--
Q 010367 98 ---QICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTK-- 170 (512)
Q Consensus 98 ---~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~--~~~~~~l~~~~-- 170 (512)
.+...+ ...-.+..+..|.+.+-+ -+.+.....+++|+||+|..++ ..+..+...+.
T Consensus 239 l~~~~~~~~-~~~I~f~nGs~i~~lsa~---------------~~slrG~~~~~viiDE~a~~~~~~el~~al~~~ls~~ 302 (385)
T 2o0j_A 239 LQPGIVEWN-KGSIELDNGSSIGAYASS---------------PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSG 302 (385)
T ss_dssp TSCCEEEEC-SSEEEETTSCEEEEEECS---------------HHHHHTSCCSEEEEESGGGSTTHHHHHHHHHHHHHST
T ss_pred hhhhhccCC-ccEEEeCCCCEEEEEECC---------------CCCccCCCCCEEEechhhhcCCCHHHHHHHHHHhhcC
Confidence 111111 111112222333332210 2334457789999999999985 34444433333
Q ss_pred cceEEEEcccCCCC
Q 010367 171 SHCKLGLTATLVRE 184 (512)
Q Consensus 171 ~~~~l~LTATp~~~ 184 (512)
...++.+..||...
T Consensus 303 ~~~kiiiiSTP~g~ 316 (385)
T 2o0j_A 303 RRSKIIITTTPNGL 316 (385)
T ss_dssp TCCEEEEEECCCSS
T ss_pred CCCcEEEEeCCCCc
Confidence 23577778888654
No 103
>3vkw_A Replicase large subunit; alpha/beta domain, helicase, transferase; 1.90A {Tomato mosaic virus}
Probab=97.71 E-value=6.4e-05 Score=76.46 Aligned_cols=110 Identities=11% Similarity=-0.019 Sum_probs=77.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEchhh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTYNM 123 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~~~ 123 (512)
+-.++.++.|+|||......+.. ++.+|++|+++++..|.+.+.+. +.. .....-|.|++.
T Consensus 162 ~v~~I~G~aGsGKTt~I~~~~~~--~~~lVlTpT~~aa~~l~~kl~~~-~~~----------------~~~~~~V~T~ds 222 (446)
T 3vkw_A 162 KVVLVDGVPGCGKTKEILSRVNF--EEDLILVPGRQAAEMIRRRANAS-GII----------------VATKDNVRTVDS 222 (446)
T ss_dssp EEEEEEECTTSCHHHHHHHHCCT--TTCEEEESCHHHHHHHHHHHTTT-SCC----------------CCCTTTEEEHHH
T ss_pred cEEEEEcCCCCCHHHHHHHHhcc--CCeEEEeCCHHHHHHHHHHhhhc-Ccc----------------ccccceEEEeHH
Confidence 34578899999999988766532 68999999999999999888542 110 011234888886
Q ss_pred hhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcccCCC
Q 010367 124 VAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLVR 183 (512)
Q Consensus 124 l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~~ 183 (512)
+...... ......+++|||||..+....+..++..++. .++.|.|=|.+
T Consensus 223 fL~~~~~----------~~~~~~d~liiDE~sm~~~~~l~~l~~~~~~-~~vilvGD~~Q 271 (446)
T 3vkw_A 223 FLMNYGK----------GARCQFKRLFIDEGLMLHTGCVNFLVEMSLC-DIAYVYGDTQQ 271 (446)
T ss_dssp HHHTTTS----------SCCCCCSEEEEETGGGSCHHHHHHHHHHTTC-SEEEEEECTTS
T ss_pred hhcCCCC----------CCCCcCCEEEEeCcccCCHHHHHHHHHhCCC-CEEEEecCccc
Confidence 6433110 0012378999999999988777777766655 67788887765
No 104
>3cpe_A Terminase, DNA packaging protein GP17; large terminase, alternative initiation, ATP-binding, DNA- binding, hydrolase, nuclease; HET: DNA; 2.80A {Bacteriophage T4} PDB: 3ezk_A*
Probab=97.62 E-value=0.0011 Score=71.00 Aligned_cols=142 Identities=17% Similarity=0.181 Sum_probs=87.6
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh----c-CCCEEEEEcChhhHHHHHHHHHHhhCCCCC-
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR----I-KKSCLCLATNAVSVDQWAFQFKLWSTIQDD- 97 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~----~-~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~- 97 (512)
+.|.|||+..+..+... +..++..+-|.|||.++...+.. . +..+++++|+...+..+...++.+....+.
T Consensus 162 ~~l~p~Q~~i~~~l~~~---r~~~i~~~Rq~GKS~~~a~~~l~~~~~~~~~~i~~va~t~~qA~~~~~~i~~~i~~~p~~ 238 (592)
T 3cpe_A 162 VQLRDYQRDMLKIMSSK---RMTVCNLSRQLGKTTVVAIFLAHFVCFNKDKAVGILAHKGSMSAEVLDRTKQAIELLPDF 238 (592)
T ss_dssp CCCCHHHHHHHHHHHHC---SEEEEEECSSSCHHHHHHHHHHHHHHTSSSCEEEEEESSHHHHHHHHHHHHHHHTTSCTT
T ss_pred CcCCHHHHHHHHhhccc---cEEEEEEcCccChHHHHHHHHHHHHHhCCCCeEEEEECCHHHHHHHHHHHHHHHHhChHh
Confidence 68999999999877432 37899999999999886544321 1 247999999999888877777776543321
Q ss_pred -c--EEEEcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCc--hHHHHHHHhccc-
Q 010367 98 -Q--ICRFTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPA--HMFRKVISLTKS- 171 (512)
Q Consensus 98 -~--v~~~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~--~~~~~~l~~~~~- 171 (512)
. +...+ ...-.+..+..|.+.+-+ -..+.....+++|+||+|..+. ..+..+...+..
T Consensus 239 ~~~~~~~~~-~~~i~~~nGs~i~~~s~~---------------~~~lrG~~~~~~iiDE~~~~~~~~~l~~~~~~~l~~~ 302 (592)
T 3cpe_A 239 LQPGIVEWN-KGSIELDNGSSIGAYASS---------------PDAVRGNSFAMIYIEDCAFIPNFHDSWLAIQPVISSG 302 (592)
T ss_dssp TSCCEEEEC-SSEEEETTSCEEEEEECC---------------HHHHHHSCCSEEEEETGGGCTTHHHHHHHHHHHHSSS
T ss_pred hccccccCC-ccEEEecCCCEEEEEeCC---------------CCCccCCCcceEEEehhccCCchhHHHHHHHHHhccC
Confidence 1 11111 111111222223322110 1233346789999999999987 444444434432
Q ss_pred -ceEEEEcccCCCC
Q 010367 172 -HCKLGLTATLVRE 184 (512)
Q Consensus 172 -~~~l~LTATp~~~ 184 (512)
..++.++.||...
T Consensus 303 ~~~~ii~isTP~~~ 316 (592)
T 3cpe_A 303 RRSKIIITTTPNGL 316 (592)
T ss_dssp SCCEEEEEECCCTT
T ss_pred CCceEEEEeCCCCc
Confidence 3577788899755
No 105
>3lfu_A DNA helicase II; SF1 helicase, ATP-binding, DNA damage, DNA REP replication, DNA-binding, hydrolase, nucleotide-B SOS response; HET: DNA; 1.80A {Escherichia coli} PDB: 2is6_A* 2is2_A* 2is1_A* 2is4_A*
Probab=97.53 E-value=0.00024 Score=76.90 Aligned_cols=66 Identities=11% Similarity=0.110 Sum_probs=52.4
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCC
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTI 94 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~ 94 (512)
..|.|.|.+++.. .. ...+|.++.|+|||.+.+.-+..+ + .++|++++|...+.+..+.+....+.
T Consensus 8 ~~Ln~~Q~~av~~--~~---~~~lV~a~aGsGKT~~l~~ri~~l~~~~~~~~~~iL~ltft~~aa~e~~~rl~~~~~~ 80 (647)
T 3lfu_A 8 DSLNDKQREAVAA--PR---SNLLVLAGAGSGKTRVLVHRIAWLMSVENCSPYSIMAVTFTNKAAAEMRHRIGQLMGT 80 (647)
T ss_dssp TTCCHHHHHHHTC--CS---SCEEEEECTTSCHHHHHHHHHHHHHHTSCCCGGGEEEEESSHHHHHHHHHHHHHHHCS
T ss_pred hcCCHHHHHHHhC--CC---CCEEEEECCCCCHHHHHHHHHHHHHHhCCCChhhEEEEeccHHHHHHHHHHHHHHhcc
Confidence 3688999999972 12 378999999999999976655432 1 47999999999999999999887543
No 106
>2j9r_A Thymidine kinase; TK1, DNK, lasso, transferase, ATP-binding, deoxyribonucleoside kinase, DNA synthesis, phosphate accept nucleotide-binding; HET: THM; 2.7A {Bacillus anthracis} PDB: 2ja1_A*
Probab=97.34 E-value=0.00091 Score=61.13 Aligned_cols=34 Identities=18% Similarity=0.086 Sum_probs=27.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (512)
-++.+|||+|||..++..+.+. +.+++++.|...
T Consensus 31 ~vitG~MgsGKTT~lL~~a~r~~~~g~kVli~k~~~d 67 (214)
T 2j9r_A 31 EVICGSMFSGKSEELIRRVRRTQFAKQHAIVFKPCID 67 (214)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEECC--
T ss_pred EEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEeccC
Confidence 3578999999999998888654 679999999764
No 107
>2orw_A Thymidine kinase; TMTK, TP4A, transferase; HET: 4TA; 1.50A {Thermotoga maritima} PDB: 2qpo_A 2qq0_A* 2qqe_A*
Probab=97.33 E-value=0.00083 Score=60.28 Aligned_cols=34 Identities=21% Similarity=0.097 Sum_probs=27.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcCh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~ 78 (512)
-.++.+|+|+|||..++..+.+. +.+++++.|..
T Consensus 5 i~vi~G~~gsGKTT~ll~~~~~~~~~g~~v~~~~~~~ 41 (184)
T 2orw_A 5 LTVITGPMYSGKTTELLSFVEIYKLGKKKVAVFKPKI 41 (184)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCEEEEEEEC-
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeecc
Confidence 46789999999999988777653 56899998875
No 108
>1xx6_A Thymidine kinase; NESG, northeast structural genomics consortium, protein STRU initiative, PSI, structural genomics, DNA synthesis; HET: ADP; 2.00A {Clostridium acetobutylicum} SCOP: c.37.1.24 g.39.1.14
Probab=97.22 E-value=0.0014 Score=59.04 Aligned_cols=35 Identities=23% Similarity=0.159 Sum_probs=28.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcCh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNA 78 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~ 78 (512)
+-.++.+|||+|||..++..+.+. +.+++++.|..
T Consensus 9 ~i~v~~G~mgsGKTT~ll~~a~r~~~~g~kV~v~k~~~ 46 (191)
T 1xx6_A 9 WVEVIVGPMYSGKSEELIRRIRRAKIAKQKIQVFKPEI 46 (191)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEEC-
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEecc
Confidence 356788999999999998888665 67899999874
No 109
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=97.15 E-value=0.0013 Score=67.74 Aligned_cols=44 Identities=23% Similarity=0.249 Sum_probs=33.4
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
..+..++..+...+.+|++|+|+|||.++-.++.....+++-+.
T Consensus 39 ~~L~~~i~~~~~~~vLL~GppGtGKTtlAr~ia~~~~~~f~~l~ 82 (447)
T 3pvs_A 39 KPLPRAIEAGHLHSMILWGPPGTGKTTLAEVIARYANADVERIS 82 (447)
T ss_dssp SHHHHHHHHTCCCEEEEECSTTSSHHHHHHHHHHHTTCEEEEEE
T ss_pred HHHHHHHHcCCCcEEEEECCCCCcHHHHHHHHHHHhCCCeEEEE
Confidence 44556666665568899999999999999888888776655443
No 110
>1a5t_A Delta prime, HOLB; zinc finger, DNA replication; 2.20A {Escherichia coli K12} SCOP: a.80.1.1 c.37.1.20 PDB: 1jr3_E* 1xxh_E* 1xxi_E* 3glf_E* 3glg_E* 3glh_E* 3gli_E*
Probab=97.12 E-value=0.0035 Score=61.81 Aligned_cols=43 Identities=16% Similarity=0.221 Sum_probs=33.8
Q ss_pred CcHHHHHHHHHH---HhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 26 PRPYQEKSLSKM---FGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 26 Lr~yQ~~al~~~---~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
++|+|.+++..+ +.+++ ++..++.+|.|+|||.++..++..+.
T Consensus 3 ~~pw~~~~~~~l~~~i~~~~~~~a~L~~G~~G~GKt~~a~~la~~l~ 49 (334)
T 1a5t_A 3 WYPWLRPDFEKLVASYQAGRGHHALLIQALPGMGDDALIYALSRYLL 49 (334)
T ss_dssp CCGGGHHHHHHHHHHHHTTCCCSEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred CCCchHHHHHHHHHHHHcCCcceeEEEECCCCchHHHHHHHHHHHHh
Confidence 679999988765 34443 34589999999999999998887764
No 111
>2b8t_A Thymidine kinase; deoxyribonucleoside kinase, zinc-binding domain, TK1, UU-TK, transferase; HET: THM; 2.00A {Ureaplasma parvum} SCOP: c.37.1.24 g.39.1.14 PDB: 2uz3_A*
Probab=97.10 E-value=0.00057 Score=63.25 Aligned_cols=36 Identities=19% Similarity=0.119 Sum_probs=28.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (512)
.-.++.+|||+|||..++..+.+. +.+++++.|...
T Consensus 13 ~i~litG~mGsGKTT~ll~~~~r~~~~g~kVli~~~~~d 51 (223)
T 2b8t_A 13 WIEFITGPMFAGKTAELIRRLHRLEYADVKYLVFKPKID 51 (223)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHHHTTCCEEEEEECCC
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEEeccC
Confidence 356778999999999988888655 568999988663
No 112
>3u61_B DNA polymerase accessory protein 44; AAA+, ATP hydrolase, clamp loader, sliding clamp, primer-TEM DNA, DNA binding protein-DNA complex; HET: DNA ADP 08T; 3.20A {Enterobacteria phage T4} PDB: 3u5z_B* 3u60_B*
Probab=97.06 E-value=0.0047 Score=60.41 Aligned_cols=55 Identities=9% Similarity=0.190 Sum_probs=38.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcce-EEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSG-IIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~-il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
+.-.+...+.+..++..+...+. ++.+|+|+|||.++-.++..++.+++.+-++.
T Consensus 28 ivg~~~~~~~l~~~l~~~~~~~~~L~~G~~G~GKT~la~~la~~l~~~~~~i~~~~ 83 (324)
T 3u61_B 28 CILPAFDKETFKSITSKGKIPHIILHSPSPGTGKTTVAKALCHDVNADMMFVNGSD 83 (324)
T ss_dssp SCCCHHHHHHHHHHHHTTCCCSEEEECSSTTSSHHHHHHHHHHHTTEEEEEEETTT
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEeeCcCCCCHHHHHHHHHHHhCCCEEEEcccc
Confidence 34556677777777776644455 55566999999999998888876666655433
No 113
>2p65_A Hypothetical protein PF08_0063; CLPB, malaria, structural genomics, structural genomics consortium, SGC, unknown function; 1.70A {Plasmodium falciparum}
Probab=96.98 E-value=0.0035 Score=55.34 Aligned_cols=43 Identities=16% Similarity=0.189 Sum_probs=31.8
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-++.+.+.+...+.....++.+|.+|+|+|||..+-.++..+
T Consensus 25 ~g~~~~~~~l~~~l~~~~~~~vll~G~~G~GKT~la~~~~~~~ 67 (187)
T 2p65_A 25 IGRDTEIRRAIQILSRRTKNNPILLGDPGVGKTAIVEGLAIKI 67 (187)
T ss_dssp CSCHHHHHHHHHHHTSSSSCEEEEESCGGGCHHHHHHHHHHHH
T ss_pred hcchHHHHHHHHHHhCCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 3455566666666666555688999999999999988777654
No 114
>1l8q_A Chromosomal replication initiator protein DNAA; AAA+, helix-turn-helix, nucleotide-binding, DNA binding, REP initiation, DNA binding protein; HET: ADP; 2.70A {Aquifex aeolicus} SCOP: a.4.12.2 c.37.1.20 PDB: 3r8f_A* 2hcb_A*
Probab=96.95 E-value=0.014 Score=57.10 Aligned_cols=43 Identities=14% Similarity=0.060 Sum_probs=30.7
Q ss_pred HHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc
Q 010367 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (512)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (512)
+..+.... ...+.+|.+|+|+|||..+-.++..+ +.+++++..
T Consensus 26 ~~~~~~~~~~~~~~lll~G~~GtGKT~la~~i~~~~~~~~~~~~~i~~ 73 (324)
T 1l8q_A 26 VKEALENLGSLYNPIFIYGSVGTGKTHLLQAAGNEAKKRGYRVIYSSA 73 (324)
T ss_dssp HHHHHHTTTTSCSSEEEECSSSSSHHHHHHHHHHHHHHTTCCEEEEEH
T ss_pred HHHHHhCcCCCCCeEEEECCCCCcHHHHHHHHHHHHHHCCCEEEEEEH
Confidence 44444443 23578999999999999988877665 567776654
No 115
>3eie_A Vacuolar protein sorting-associated protein 4; AAA ATPase, ATP-binding cassette, ATP-binding, endosome, MEM nucleotide-binding; 2.70A {Saccharomyces cerevisiae} PDB: 3eih_A* 2rko_A 3mhv_C
Probab=96.93 E-value=0.0039 Score=61.08 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
++.+|.+|+|+|||.++-+++...+.+++.+..
T Consensus 52 ~~vLl~GppGtGKT~la~aia~~~~~~~~~v~~ 84 (322)
T 3eie_A 52 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 84 (322)
T ss_dssp CEEEEECSSSSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred CeEEEECCCCCcHHHHHHHHHHHHCCCEEEEch
Confidence 568999999999999999998888777766654
No 116
>1jbk_A CLPB protein; beta barrel, chaperone; 1.80A {Escherichia coli} SCOP: c.37.1.20
Probab=96.92 E-value=0.0053 Score=54.34 Aligned_cols=44 Identities=16% Similarity=0.171 Sum_probs=32.7
Q ss_pred CCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 24 AQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+.-++.+.+.+...+..+..++.+|.+|+|+|||..+-.++..+
T Consensus 24 ~~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 67 (195)
T 1jbk_A 24 VIGRDEEIRRTIQVLQRRTKNNPVLIGEPGVGKTAIVEGLAQRI 67 (195)
T ss_dssp CCSCHHHHHHHHHHHTSSSSCEEEEECCTTSCHHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHhcCCCCceEEECCCCCCHHHHHHHHHHHH
Confidence 34466667777666766545689999999999999987777654
No 117
>3e2i_A Thymidine kinase; Zn-binding, ATP-binding, DNA synthesis, nucleotide-B transferase; HET: MSE; 2.01A {Staphylococcus aureus}
Probab=96.82 E-value=0.0056 Score=55.79 Aligned_cols=35 Identities=17% Similarity=-0.020 Sum_probs=26.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (512)
=-++.+|||+|||...+..+.+. +.+++|+-|...
T Consensus 30 I~vitG~M~sGKTT~Llr~~~r~~~~g~kvli~kp~~D 67 (219)
T 3e2i_A 30 IECITGSMFSGKSEELIRRLRRGIYAKQKVVVFKPAID 67 (219)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEEC--
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCceEEEEeccC
Confidence 45788999999998777666443 578999999764
No 118
>1d2n_A N-ethylmaleimide-sensitive fusion protein; hexamerization domain, ATPase, transport; HET: ANP; 1.75A {Cricetulus griseus} SCOP: c.37.1.20 PDB: 1nsf_A*
Probab=96.74 E-value=0.005 Score=58.61 Aligned_cols=34 Identities=15% Similarity=0.086 Sum_probs=28.0
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
..++.+|.+|+|+|||.++-.++...+.+++.+.
T Consensus 63 ~~~~vLl~G~~GtGKT~la~~ia~~~~~~~~~i~ 96 (272)
T 1d2n_A 63 PLVSVLLEGPPHSGKTALAAKIAEESNFPFIKIC 96 (272)
T ss_dssp SEEEEEEECSTTSSHHHHHHHHHHHHTCSEEEEE
T ss_pred CCeEEEEECCCCCcHHHHHHHHHHHhCCCEEEEe
Confidence 4467899999999999999988888777766654
No 119
>3vfd_A Spastin; ATPase, microtubule severing, hydrolase; 3.30A {Homo sapiens}
Probab=96.73 E-value=0.0048 Score=62.23 Aligned_cols=34 Identities=21% Similarity=0.378 Sum_probs=28.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.++.+|.+|+|+|||.++-.++...+.+++.+.+
T Consensus 148 ~~~vLL~GppGtGKT~la~aia~~~~~~~~~v~~ 181 (389)
T 3vfd_A 148 ARGLLLFGPPGNGKTMLAKAVAAESNATFFNISA 181 (389)
T ss_dssp CSEEEEESSTTSCHHHHHHHHHHHTTCEEEEECS
T ss_pred CceEEEECCCCCCHHHHHHHHHHhhcCcEEEeeH
Confidence 3588999999999999999988888777666654
No 120
>2chg_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATPase, ATP-binding, nucleotide-binding; HET: ANP; 2.1A {Archaeoglobus fulgidus}
Probab=96.71 E-value=0.014 Score=52.81 Aligned_cols=43 Identities=14% Similarity=0.109 Sum_probs=32.8
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-++...+.+..++..+...+.+|.+|+|+|||..+-.++..+
T Consensus 20 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~l~~~l~~~~ 62 (226)
T 2chg_A 20 VGQDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (226)
T ss_dssp CSCHHHHHHHHHHHHTTCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred cCcHHHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3466677777777776654568999999999999887777654
No 121
>3ec2_A DNA replication protein DNAC; helicase loader, replication initiation factor, ATP-binding, nucleotide-binding; HET: DNA ADP; 2.70A {Aquifex aeolicus} PDB: 3ecc_A*
Probab=96.59 E-value=0.013 Score=51.84 Aligned_cols=60 Identities=15% Similarity=0.082 Sum_probs=37.6
Q ss_pred cHHHHHHHHHHH---hC---CCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHH
Q 010367 27 RPYQEKSLSKMF---GN---GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQ 87 (512)
Q Consensus 27 r~yQ~~al~~~~---~~---~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~ 87 (512)
.+.|.+++..+. .+ ......+|.+|+|+|||..+-.++..+ +..++++ +...+...+...
T Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~g~~~~l~G~~G~GKTtL~~~i~~~~~~~~g~~~~~~-~~~~~~~~~~~~ 85 (180)
T 3ec2_A 16 NVSQNRALLTIRVFVHNFNPEEGKGLTFVGSPGVGKTHLAVATLKAIYEKKGIRGYFF-DTKDLIFRLKHL 85 (180)
T ss_dssp SHHHHHHHHHHHHHHHSCCGGGCCEEEECCSSSSSHHHHHHHHHHHHHHHSCCCCCEE-EHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHhccccCCCEEEEECCCCCCHHHHHHHHHHHHHHHcCCeEEEE-EHHHHHHHHHHH
Confidence 467888888653 22 123478899999999999987776544 3344443 334444444433
No 122
>2qby_B CDC6 homolog 3, cell division control protein 6 homolog 3; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=96.55 E-value=0.011 Score=58.95 Aligned_cols=45 Identities=18% Similarity=0.085 Sum_probs=32.5
Q ss_pred CCCCcHHHHHHHHHHHh----CCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.-|+.+.+.+..++. .+..+..+|.+|+|+|||.++-.++..+
T Consensus 21 ~l~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~la~~l~~~~ 69 (384)
T 2qby_B 21 EIPFREDILRDAAIAIRYFVKNEVKFSNLFLGLTGTGKTFVSKYIFNEI 69 (384)
T ss_dssp SCTTCHHHHHHHHHHHHHHHTTCCCCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34556777776665443 3444578999999999999988887665
No 123
>2gno_A DNA polymerase III, gamma subunit-related protein; structural genomics, joint center for structural genomics, J protein structure initiative; HET: DNA; 2.00A {Thermotoga maritima} SCOP: a.80.1.1 c.37.1.20
Probab=96.49 E-value=0.018 Score=55.84 Aligned_cols=34 Identities=12% Similarity=-0.026 Sum_probs=26.2
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH
Q 010367 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (512)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~ 65 (512)
+.+...+.+++.+..++.+|.|+|||.++..++.
T Consensus 7 ~~L~~~i~~~~~~~~Lf~Gp~G~GKtt~a~~la~ 40 (305)
T 2gno_A 7 ETLKRIIEKSEGISILINGEDLSYPREVSLELPE 40 (305)
T ss_dssp HHHHHHHHTCSSEEEEEECSSSSHHHHHHHHHHH
T ss_pred HHHHHHHHCCCCcEEEEECCCCCCHHHHHHHHHH
Confidence 4445556666566889999999999998887775
No 124
>2zan_A Vacuolar protein sorting-associating protein 4B; SKD1, VPS4B, AAA ATPase, ATP-binding, coiled coil, membrane, nucleotide-binding, phosphorylation; HET: ATP; 3.00A {Mus musculus} PDB: 2zam_A* 2zao_A* 2jqh_A 2jqk_A 1wr0_A 2jq9_A 2k3w_A 1yxr_A
Probab=96.47 E-value=0.0052 Score=63.13 Aligned_cols=33 Identities=21% Similarity=0.334 Sum_probs=26.0
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhc-CCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~ 75 (512)
.++.+|.+|+|+|||.++-+++..+ +.+++.+.
T Consensus 167 ~~~vLL~GppGtGKT~lA~aia~~~~~~~~~~v~ 200 (444)
T 2zan_A 167 WRGILLFGPPGTGKSYLAKAVATEANNSTFFSIS 200 (444)
T ss_dssp CSEEEEECSTTSSHHHHHHHHHHHCCSSEEEEEC
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCCCEEEEe
Confidence 3678999999999999999999888 44444443
No 125
>3pfi_A Holliday junction ATP-dependent DNA helicase RUVB; probable holliday junction DNA helicase; HET: ADP; 2.69A {Campylobacter jejuni subsp}
Probab=96.46 E-value=0.016 Score=56.91 Aligned_cols=50 Identities=14% Similarity=0.125 Sum_probs=34.5
Q ss_pred CCcHHHHHHHHHHHh-----CCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 25 QPRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
.-++...+.+..++. .....+.+|.+|+|+|||.++-.++...+.+++.+
T Consensus 32 iG~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~ia~~~~~~~~~~ 86 (338)
T 3pfi_A 32 IGQESIKKNLNVFIAAAKKRNECLDHILFSGPAGLGKTTLANIISYEMSANIKTT 86 (338)
T ss_dssp CSCHHHHHHHHHHHHHHHHTTSCCCCEEEECSTTSSHHHHHHHHHHHTTCCEEEE
T ss_pred CChHHHHHHHHHHHHHHHhcCCCCCeEEEECcCCCCHHHHHHHHHHHhCCCeEEe
Confidence 334455555555443 22335899999999999999988888877665544
No 126
>2zpa_A Uncharacterized protein YPFI; RNA modification enzyme, RNA helicase, acetyltransferase, GCN5 acetyltransferase; HET: ACO ADP; 2.35A {Escherichia coli K12}
Probab=96.46 E-value=0.0076 Score=64.33 Aligned_cols=118 Identities=19% Similarity=0.253 Sum_probs=81.3
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRF 102 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~ 102 (512)
...+.+.|.+++..++.-.. ...+|.++-|.|||...-.++..+...++|.+|+..-+.. +..+.+-
T Consensus 173 ~~~~T~dQ~~al~~~~~~~~-~~~vlta~RGRGKSa~lG~~~a~~~~~~~vtAP~~~a~~~----l~~~~~~-------- 239 (671)
T 2zpa_A 173 TGAPQPEQQQLLKQLMTMPP-GVAAVTAARGRGKSALAGQLISRIAGRAIVTAPAKASTDV----LAQFAGE-------- 239 (671)
T ss_dssp CSSCCHHHHHHHHHHTTCCS-EEEEEEECTTSSHHHHHHHHHHHSSSCEEEECSSCCSCHH----HHHHHGG--------
T ss_pred CCCCCHHHHHHHHHHHHhhh-CeEEEecCCCCCHHHHHHHHHHHHHhCcEEECCCHHHHHH----HHHHhhC--------
Confidence 34678899999998876321 2568999999999987777777777789999999985542 2333220
Q ss_pred cCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcccceEEEEcccCC
Q 010367 103 TSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 103 ~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~~~~~l~LTATp~ 182 (512)
.|-+..|+.+. .. ....+++|||||=.++.+....++.. ..++.||.|..
T Consensus 240 ------------~i~~~~Pd~~~-------------~~--~~~~dlliVDEAAaIp~pll~~ll~~---~~~v~~~tTv~ 289 (671)
T 2zpa_A 240 ------------KFRFIAPDALL-------------AS--DEQADWLVVDEAAAIPAPLLHQLVSR---FPRTLLTTTVQ 289 (671)
T ss_dssp ------------GCCBCCHHHHH-------------HS--CCCCSEEEEETGGGSCHHHHHHHHTT---SSEEEEEEEBS
T ss_pred ------------CeEEeCchhhh-------------hC--cccCCEEEEEchhcCCHHHHHHHHhh---CCeEEEEecCC
Confidence 01122333221 11 24589999999999999988887763 34688888875
Q ss_pred C
Q 010367 183 R 183 (512)
Q Consensus 183 ~ 183 (512)
.
T Consensus 290 G 290 (671)
T 2zpa_A 290 G 290 (671)
T ss_dssp S
T ss_pred c
Confidence 4
No 127
>2qp9_X Vacuolar protein sorting-associated protein 4; ATPase domain, beta domain, C-terminal helix, ATP-binding, E nucleotide-binding; 2.90A {Saccharomyces cerevisiae} PDB: 2qpa_A*
Probab=96.43 E-value=0.0059 Score=60.75 Aligned_cols=33 Identities=18% Similarity=0.314 Sum_probs=27.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
++.+|.+|+|+|||.++-+++..++.+++.+..
T Consensus 85 ~~iLL~GppGtGKT~la~ala~~~~~~~~~v~~ 117 (355)
T 2qp9_X 85 SGILLYGPPGTGKSYLAKAVATEANSTFFSVSS 117 (355)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCEEEEEEH
T ss_pred ceEEEECCCCCcHHHHHHHHHHHhCCCEEEeeH
Confidence 578999999999999999999888877766643
No 128
>3h4m_A Proteasome-activating nucleotidase; ATPase, PAN, ATP-binding, nucleotide-binding, HY; HET: ADP; 3.11A {Methanocaldococcus jannaschii}
Probab=96.41 E-value=0.0034 Score=60.15 Aligned_cols=35 Identities=17% Similarity=0.298 Sum_probs=28.7
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
..++.+|.+|+|+|||.++-.++..++.+++.+..
T Consensus 50 ~~~~~ll~G~~GtGKT~la~~la~~~~~~~~~v~~ 84 (285)
T 3h4m_A 50 PPKGILLYGPPGTGKTLLAKAVATETNATFIRVVG 84 (285)
T ss_dssp CCSEEEEESSSSSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEeh
Confidence 34678999999999999999988888777666543
No 129
>2bjv_A PSP operon transcriptional activator; AAA, transcription activation, gene regulation, sigma54 activator, enhancer binding protein, PSPF; 1.7A {Escherichia coli} PDB: 2bjw_A 2c96_A* 2c98_A* 2c99_A* 2c9c_A* 2vii_A*
Probab=96.41 E-value=0.013 Score=55.44 Aligned_cols=33 Identities=18% Similarity=0.248 Sum_probs=25.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC---CCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~P 76 (512)
.+.+|.+|+|+|||.++-.+..... .+++.+-.
T Consensus 30 ~~vll~G~~GtGKt~la~~i~~~~~~~~~~~~~v~~ 65 (265)
T 2bjv_A 30 KPVLIIGERGTGKELIASRLHYLSSRWQGPFISLNC 65 (265)
T ss_dssp SCEEEECCTTSCHHHHHHHHHHTSTTTTSCEEEEEG
T ss_pred CCEEEECCCCCcHHHHHHHHHHhcCccCCCeEEEec
Confidence 5899999999999999888877654 35555543
No 130
>1xwi_A SKD1 protein; VPS4B, AAA ATPase, protein transport; 2.80A {Homo sapiens}
Probab=96.38 E-value=0.0027 Score=62.29 Aligned_cols=33 Identities=21% Similarity=0.385 Sum_probs=26.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-CCCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-KKSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P 76 (512)
++.+|.+|+|+|||..+-.++..+ +.+++.+..
T Consensus 46 ~~iLL~GppGtGKT~la~ala~~~~~~~~~~i~~ 79 (322)
T 1xwi_A 46 RGILLFGPPGTGKSYLAKAVATEANNSTFFSISS 79 (322)
T ss_dssp SEEEEESSSSSCHHHHHHHHHHHTTSCEEEEEEC
T ss_pred ceEEEECCCCccHHHHHHHHHHHcCCCcEEEEEh
Confidence 578999999999999999999888 445544443
No 131
>1fnn_A CDC6P, cell division control protein 6; ORC1, AAA protein, DNA replication initation factor, cell cycle control factor; HET: ADP; 2.00A {Pyrobaculum aerophilum} SCOP: a.4.5.11 c.37.1.20
Probab=96.33 E-value=0.044 Score=54.59 Aligned_cols=53 Identities=17% Similarity=0.139 Sum_probs=36.1
Q ss_pred CCCCcHHHHHHHHHHHhC----CCCc--ceEEEcCCCCcHHHHHHHHHHhcC----CCEEEEE
Q 010367 23 HAQPRPYQEKSLSKMFGN----GRAR--SGIIVLPCGAGKSLVGVSAACRIK----KSCLCLA 75 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~----~~~~--~~il~~~tG~GKTl~~i~~i~~~~----~~~Lvl~ 75 (512)
.+.-|+.+.+.+..++.. ..+. ..+|.+|+|+|||..+-.++..+. ..++.+-
T Consensus 18 ~l~gr~~~~~~l~~~l~~~~~~~~~~~~~~li~G~~G~GKTtl~~~l~~~~~~~~~~~~~~i~ 80 (389)
T 1fnn_A 18 RLPHREQQLQQLDILLGNWLRNPGHHYPRATLLGRPGTGKTVTLRKLWELYKDKTTARFVYIN 80 (389)
T ss_dssp CCTTCHHHHHHHHHHHHHHHHSTTSSCCEEEEECCTTSSHHHHHHHHHHHHTTSCCCEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCCCeEEEECCCCCCHHHHHHHHHHHHhhhcCeeEEEEe
Confidence 345577777776665543 3333 689999999999999888877663 3455554
No 132
>4b4t_J 26S protease regulatory subunit 8 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=96.31 E-value=0.007 Score=60.74 Aligned_cols=37 Identities=19% Similarity=0.286 Sum_probs=32.2
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
.+++.++.+|+|+|||+.+-+++...+.+++.+..+.
T Consensus 181 ~prGvLL~GPPGTGKTllAkAiA~e~~~~f~~v~~s~ 217 (405)
T 4b4t_J 181 QPKGVILYGPPGTGKTLLARAVAHHTDCKFIRVSGAE 217 (405)
T ss_dssp CCCCEEEESCSSSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCceEEeCCCCCCHHHHHHHHHHhhCCCceEEEhHH
Confidence 4578899999999999999999999998888887644
No 133
>3syl_A Protein CBBX; photosynthesis, rubisco activase, AAA+ protein, calvin cycle chaperone; 3.00A {Rhodobacter sphaeroides} PDB: 3syk_A 3zuh_A*
Probab=96.30 E-value=0.029 Score=54.12 Aligned_cols=25 Identities=20% Similarity=0.119 Sum_probs=20.6
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
..+.+|.+|+|+|||.++-.++..+
T Consensus 67 ~~~vll~G~~GtGKT~la~~la~~l 91 (309)
T 3syl_A 67 TLHMSFTGNPGTGKTTVALKMAGLL 91 (309)
T ss_dssp CCEEEEEECTTSSHHHHHHHHHHHH
T ss_pred CceEEEECCCCCCHHHHHHHHHHHH
Confidence 3468999999999999987777654
No 134
>3co5_A Putative two-component system transcriptional RES regulator; structural genomics, APC89341.1; 2.40A {Neisseria gonorrhoeae}
Probab=96.30 E-value=0.0089 Score=50.92 Aligned_cols=25 Identities=8% Similarity=-0.157 Sum_probs=19.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.+.+|.+|+|+|||.++-.+.....
T Consensus 28 ~~vll~G~~GtGKt~lA~~i~~~~~ 52 (143)
T 3co5_A 28 SPVFLTGEAGSPFETVARYFHKNGT 52 (143)
T ss_dssp SCEEEEEETTCCHHHHHGGGCCTTS
T ss_pred CcEEEECCCCccHHHHHHHHHHhCC
Confidence 4899999999999988766655444
No 135
>2orv_A Thymidine kinase; TP4A (P1-(5'-adenosyl)P4-(5'- (2'deoxythymidil))tetraphosphate, transferase; HET: 4TA; 2.30A {Homo sapiens} SCOP: c.37.1.24 g.39.1.14
Probab=96.29 E-value=0.011 Score=54.52 Aligned_cols=35 Identities=23% Similarity=0.240 Sum_probs=28.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (512)
--++.++||+|||..++..+.+. +.+++++-|...
T Consensus 21 l~v~~G~MgsGKTT~lL~~~~r~~~~g~kvli~kp~~D 58 (234)
T 2orv_A 21 IQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAKD 58 (234)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHTTTCCEEEEEETTC
T ss_pred EEEEECCCCCcHHHHHHHHHHHHHHCCCeEEEEeecCC
Confidence 55778999999999888887554 578999998775
No 136
>1iqp_A RFCS; clamp loader, extended AAA-ATPase domain, complex with ADP, replication; HET: ADP; 2.80A {Pyrococcus furiosus} SCOP: a.80.1.1 c.37.1.20
Probab=96.27 E-value=0.024 Score=55.09 Aligned_cols=43 Identities=19% Similarity=0.200 Sum_probs=33.0
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-++...+.+..++..++..+.++.+|+|+|||.++-.++..+
T Consensus 28 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~l~~~l 70 (327)
T 1iqp_A 28 VGQEHIVKRLKHYVKTGSMPHLLFAGPPGVGKTTAALALAREL 70 (327)
T ss_dssp CSCHHHHHHHHHHHHHTCCCEEEEESCTTSSHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456677777777776654569999999999999988877664
No 137
>3bos_A Putative DNA replication factor; P-loop containing nucleoside triphosphate hydrolases, struct genomics; HET: MSE CDP; 1.75A {Shewanella amazonensis} PDB: 3sc3_A
Probab=96.26 E-value=0.012 Score=54.24 Aligned_cols=39 Identities=13% Similarity=0.067 Sum_probs=27.7
Q ss_pred HHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 29 YQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 29 yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
...+.+..+...+..+..+|.+|+|+|||..+-.++..+
T Consensus 38 ~~~~~l~~~~~~~~~~~~ll~G~~G~GKT~la~~l~~~~ 76 (242)
T 3bos_A 38 ELIGALKSAASGDGVQAIYLWGPVKSGRTHLIHAACARA 76 (242)
T ss_dssp HHHHHHHHHHHTCSCSEEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344455555554445689999999999999887776544
No 138
>1sxj_D Activator 1 41 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.24 E-value=0.0039 Score=61.59 Aligned_cols=40 Identities=15% Similarity=0.127 Sum_probs=29.2
Q ss_pred HHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+...+.+..++..+...+.++.+|+|+|||..+-.++..+
T Consensus 43 ~~~~~~l~~~l~~~~~~~~ll~G~~G~GKT~la~~la~~l 82 (353)
T 1sxj_D 43 DHAVTVLKKTLKSANLPHMLFYGPPGTGKTSTILALTKEL 82 (353)
T ss_dssp CTTHHHHHHHTTCTTCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCCEEEEECCCCCCHHHHHHHHHHHh
Confidence 3445566666666543468999999999999987777654
No 139
>3d8b_A Fidgetin-like protein 1; AAA+, ATPase, ADP, SGC, structural genomics consortium, ATP- hydrolase, magnesium, metal-binding, nucleotide-binding; HET: ADP; 2.00A {Homo sapiens}
Probab=96.21 E-value=0.0095 Score=59.28 Aligned_cols=34 Identities=21% Similarity=0.418 Sum_probs=28.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.++.+|.+|+|+|||.++-.++...+.+++.+..
T Consensus 117 ~~~vLl~GppGtGKT~la~aia~~~~~~~~~i~~ 150 (357)
T 3d8b_A 117 PKGILLFGPPGTGKTLIGKCIASQSGATFFSISA 150 (357)
T ss_dssp CSEEEEESSTTSSHHHHHHHHHHHTTCEEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHcCCeEEEEeh
Confidence 4678999999999999999998888777666654
No 140
>1sxj_B Activator 1 37 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=96.19 E-value=0.016 Score=56.15 Aligned_cols=43 Identities=19% Similarity=0.079 Sum_probs=33.0
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-++...+.+..++..++..+.++.+|.|+|||..+-.++..+
T Consensus 24 ~g~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 66 (323)
T 1sxj_B 24 VGNKETIDRLQQIAKDGNMPHMIISGMPGIGKTTSVHCLAHEL 66 (323)
T ss_dssp CSCTHHHHHHHHHHHSCCCCCEEEECSTTSSHHHHHHHHHHHH
T ss_pred HCCHHHHHHHHHHHHcCCCCeEEEECcCCCCHHHHHHHHHHHh
Confidence 3456667777777777654459999999999999988777664
No 141
>2z4s_A Chromosomal replication initiator protein DNAA; AAA+ ATPase, domain III (ATPase domain), ATP-binding, cytoplasm, DNA replication; HET: ADP; 3.00A {Thermotoga maritima} PDB: 2z4r_A*
Probab=96.17 E-value=0.08 Score=54.13 Aligned_cols=34 Identities=15% Similarity=0.095 Sum_probs=25.7
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P 76 (512)
..+.+|.+|+|+|||..+-.++..+ +.+++++..
T Consensus 130 ~~~lll~Gp~G~GKTtLa~aia~~l~~~~~~~~v~~v~~ 168 (440)
T 2z4s_A 130 YNPLFIYGGVGLGKTHLLQSIGNYVVQNEPDLRVMYITS 168 (440)
T ss_dssp SCCEEEECSSSSSHHHHHHHHHHHHHHHCCSSCEEEEEH
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHHHHhCCCCeEEEeeH
Confidence 4588999999999999987777655 455666543
No 142
>1njg_A DNA polymerase III subunit gamma; rossman-like fold, AAA+ ATPase domains, sensor 1, sensor 2, transferase; HET: DNA; 2.20A {Escherichia coli} SCOP: c.37.1.20 PDB: 1njf_A*
Probab=96.13 E-value=0.056 Score=49.44 Aligned_cols=44 Identities=16% Similarity=0.113 Sum_probs=32.3
Q ss_pred CCCcHHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 24 AQPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+.-++...+.+..++..+. .+..+|.+|.|+|||..+-.++..+
T Consensus 25 ~~g~~~~~~~l~~~l~~~~~~~~~ll~G~~G~GKT~l~~~~~~~~ 69 (250)
T 1njg_A 25 VVGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGL 69 (250)
T ss_dssp CCSCHHHHHHHHHHHHHTCCCSEEEEECSTTSCHHHHHHHHHHHH
T ss_pred HhCcHHHHHHHHHHHHcCCCCeEEEEECCCCCCHHHHHHHHHHHh
Confidence 4456667777777776543 2357899999999999987777655
No 143
>1w4r_A Thymidine kinase; type II, human, cytosolic, phosphorylation, transferase; HET: TTP; 1.83A {Homo sapiens} PDB: 1xbt_A* 2wvj_A* 2j87_A*
Probab=96.11 E-value=0.012 Score=52.76 Aligned_cols=35 Identities=23% Similarity=0.264 Sum_probs=26.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcCh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNA 78 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~ 78 (512)
.-.++.+|||+|||...+..+.+ .+.+++++.|..
T Consensus 21 ~l~fiyG~MgsGKTt~Ll~~i~n~~~~~~kvl~~kp~~ 58 (195)
T 1w4r_A 21 QIQVILGPMFSGKSTELMRRVRRFQIAQYKCLVIKYAK 58 (195)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHHHHHTTCCEEEEEETT
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHcCCeEEEEcccc
Confidence 45688999999999766666643 367899998873
No 144
>2qz4_A Paraplegin; AAA+, SPG7, protease, ADP, structural genomics, structural G consortium, SGC, ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.22A {Homo sapiens}
Probab=96.09 E-value=0.012 Score=55.25 Aligned_cols=35 Identities=23% Similarity=0.428 Sum_probs=28.3
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
.++.+|.+|+|+|||.++-.++..++.+++.+...
T Consensus 39 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~~~~~ 73 (262)
T 2qz4_A 39 PKGALLLGPPGCGKTLLAKAVATEAQVPFLAMAGA 73 (262)
T ss_dssp CCEEEEESCTTSSHHHHHHHHHHHHTCCEEEEETT
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEechH
Confidence 35688999999999999998888887777666543
No 145
>3n70_A Transport activator; sigma-54, ntpase, PSI, MCSG, structural genomics, center for structural genomics; 2.80A {Escherichia coli}
Probab=96.04 E-value=0.015 Score=49.51 Aligned_cols=24 Identities=8% Similarity=-0.231 Sum_probs=20.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.+|.+|+|+|||.++-.+....
T Consensus 25 ~~vll~G~~GtGKt~lA~~i~~~~ 48 (145)
T 3n70_A 25 IAVWLYGAPGTGRMTGARYLHQFG 48 (145)
T ss_dssp SCEEEESSTTSSHHHHHHHHHHSS
T ss_pred CCEEEECCCCCCHHHHHHHHHHhC
Confidence 589999999999999988776654
No 146
>1uaa_A REP helicase, protein (ATP-dependent DNA helicase REP.); complex (helicase/DNA), DNA unwinding, hydrolase/DNA complex; HET: DNA; 3.00A {Escherichia coli} SCOP: c.37.1.19 c.37.1.19
Probab=95.99 E-value=0.013 Score=63.55 Aligned_cols=81 Identities=10% Similarity=0.188 Sum_probs=60.5
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCCCCC
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTIQDD 97 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~ 97 (512)
.|.|.|.+++... . .+.+|.++.|+|||.+.+.-+..+ + .++|+|+.|...+.+..+.+....+..
T Consensus 2 ~L~~~Q~~av~~~--~---~~~lV~AgaGSGKT~~l~~ri~~ll~~~~~~~~~IL~lTfT~~Aa~em~~Rl~~~l~~~-- 74 (673)
T 1uaa_A 2 RLNPGQQQAVEFV--T---GPCLVLAGAGSGKTRVITNKIAHLIRGCGYQARHIAAVTFTNKAAREMKERVGQTLGRK-- 74 (673)
T ss_dssp CCCHHHHHHHHCC--S---SEEEECCCTTSCHHHHHHHHHHHHHHHHCCCGGGEEEEESSHHHHHHHHHHHHHHSCTT--
T ss_pred CCCHHHHHHHhCC--C---CCEEEEeCCCCChHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHcCcc--
Confidence 5789999999852 2 378999999999999876544322 2 479999999999999999998874321
Q ss_pred cEEEEcCCccccccCCCeEEEEchhhhhc
Q 010367 98 QICRFTSDSKERFRGNAGVVVTTYNMVAF 126 (512)
Q Consensus 98 ~v~~~~~~~~~~~~~~~~Ivv~T~~~l~~ 126 (512)
....+.|.|+..+..
T Consensus 75 --------------~~~~~~v~Tfhs~~~ 89 (673)
T 1uaa_A 75 --------------EARGLMISTFHTLGL 89 (673)
T ss_dssp --------------TTTTSEEEEHHHHHH
T ss_pred --------------cccCCEEEeHHHHHH
Confidence 012477899988864
No 147
>1hqc_A RUVB; extended AAA-ATPase domain, complex with nucleotide, hydrolase; HET: ADE; 3.20A {Thermus thermophilus} SCOP: a.4.5.11 c.37.1.20 PDB: 1ixs_B* 1ixr_C*
Probab=95.89 E-value=0.042 Score=53.39 Aligned_cols=51 Identities=12% Similarity=0.059 Sum_probs=34.5
Q ss_pred CCCcHHHHHHHHHHHh-----CCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 24 AQPRPYQEKSLSKMFG-----NGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 24 ~~Lr~yQ~~al~~~~~-----~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
+.-++...+.+..++. .....+.+|.+|+|+|||..+-.++...+.+++++
T Consensus 14 ~ig~~~~~~~l~~~l~~~~~~~~~~~~vll~G~~GtGKT~la~~i~~~~~~~~~~~ 69 (324)
T 1hqc_A 14 YIGQERLKQKLRVYLEAAKARKEPLEHLLLFGPPGLGKTTLAHVIAHELGVNLRVT 69 (324)
T ss_dssp CCSCHHHHHHHHHHHHHHHHHCSCCCCCEEECCTTCCCHHHHHHHHHHHTCCEEEE
T ss_pred hhCHHHHHHHHHHHHHHHHccCCCCCcEEEECCCCCCHHHHHHHHHHHhCCCEEEE
Confidence 3345555555555443 12335899999999999999988887776665543
No 148
>4b4t_L 26S protease subunit RPT4; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.87 E-value=0.011 Score=60.03 Aligned_cols=37 Identities=19% Similarity=0.322 Sum_probs=31.6
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
.+++.++.+|+|+|||+.+-+++..++.+++.+..+.
T Consensus 214 ~prGvLL~GPPGtGKTllAkAiA~e~~~~~~~v~~s~ 250 (437)
T 4b4t_L 214 PPKGVLLYGPPGTGKTLLAKAVAATIGANFIFSPASG 250 (437)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCeEEEECCCCCcHHHHHHHHHHHhCCCEEEEehhh
Confidence 4578899999999999999999999988888776543
No 149
>2v1u_A Cell division control protein 6 homolog; DNA replication, nucleotide-binding, replication, archaea; HET: ADP; 3.10A {Aeropyrum pernix}
Probab=95.85 E-value=0.063 Score=53.27 Aligned_cols=45 Identities=16% Similarity=0.237 Sum_probs=33.3
Q ss_pred CCCCcHHHHHHHHHHHh----CCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.-|+.+.+.+..++. .+..++.+|.+|+|+|||.++-.++..+
T Consensus 20 ~~~gr~~~~~~l~~~l~~~~~~~~~~~vll~G~~G~GKT~l~~~~~~~~ 68 (387)
T 2v1u_A 20 VLPHREAELRRLAEVLAPALRGEKPSNALLYGLTGTGKTAVARLVLRRL 68 (387)
T ss_dssp CCTTCHHHHHHHHHTTGGGTSSCCCCCEEECBCTTSSHHHHHHHHHHHH
T ss_pred CCCCHHHHHHHHHHHHHHHHcCCCCCcEEEECCCCCCHHHHHHHHHHHH
Confidence 34557777777776653 2344688999999999999988777655
No 150
>4b4t_H 26S protease regulatory subunit 7 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.81 E-value=0.021 Score=58.24 Aligned_cols=37 Identities=19% Similarity=0.287 Sum_probs=31.6
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
..++.+|.+|+|+|||+.+-+++..++.+++.+..+.
T Consensus 242 pprGILLyGPPGTGKTlLAkAiA~e~~~~fi~vs~s~ 278 (467)
T 4b4t_H 242 PPKGILLYGPPGTGKTLCARAVANRTDATFIRVIGSE 278 (467)
T ss_dssp CCSEEEECSCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCceEeeCCCCCcHHHHHHHHHhccCCCeEEEEhHH
Confidence 4578899999999999999999999988887776543
No 151
>1jr3_A DNA polymerase III subunit gamma; processivity, processivity clamp, clamp loader, AAA+ ATPase, transferase; HET: DNA; 2.70A {Escherichia coli} SCOP: a.80.1.1 c.37.1.20 PDB: 1xxh_B* 3glh_B* 3glf_B* 3gli_B* 3glg_B* 1xxi_B*
Probab=95.79 E-value=0.043 Score=54.38 Aligned_cols=44 Identities=16% Similarity=0.118 Sum_probs=32.3
Q ss_pred CCcHHHHHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 25 QPRPYQEKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-++...+.+..++..++ ++..++.+|.|+|||..+-.++..+.
T Consensus 19 vg~~~~~~~L~~~l~~~~~~~~~ll~G~~G~GKT~la~~la~~l~ 63 (373)
T 1jr3_A 19 VGQEHVLTALANGLSLGRIHHAYLFSGTRGVGKTSIARLLAKGLN 63 (373)
T ss_dssp CSCHHHHHHHHHHHHHTCCCSEEEEESCTTSSHHHHHHHHHHHHS
T ss_pred cCcHHHHHHHHHHHHhCCCCeEEEEECCCCCCHHHHHHHHHHHhC
Confidence 346666677777776553 23468999999999999888887664
No 152
>3hjh_A Transcription-repair-coupling factor; MFD, mutation frequency decline, ATP-binding, DNA DAMA repair, DNA-binding, helicase, hydrolase; 1.95A {Escherichia coli} PDB: 2b2n_A* 4dfc_A
Probab=95.75 E-value=0.029 Score=57.94 Aligned_cols=80 Identities=10% Similarity=0.050 Sum_probs=62.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCc----------c-------
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDS----------K------- 107 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~----------~------- 107 (512)
...+.+-+|+|||++...++...++++|||||+...+.||.++++.|++- .|..|-+.. .
T Consensus 16 ~~~l~g~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~~l~~~~~~---~v~~fp~~e~lpyd~~~p~~~~~~~Rl 92 (483)
T 3hjh_A 16 QRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFTDQ---MVMNLADWETLPYDSFSPHQDIISSRL 92 (483)
T ss_dssp EEEEECCCTTHHHHHHHHHHHHSSSCEEEEESSHHHHHHHHHHHHHTCSS---CEEECCCCCSCTTCSSCCCHHHHHHHH
T ss_pred eEEEeCCCchHHHHHHHHHHHHhCCCEEEEeCCHHHHHHHHHHHHhhCCC---cEEEEeCcccccccccCCChHHHHHHH
Confidence 56889999999999999999999999999999999999999999998542 255544320 0
Q ss_pred ----ccccCCCeEEEEchhhhhcc
Q 010367 108 ----ERFRGNAGVVVTTYNMVAFG 127 (512)
Q Consensus 108 ----~~~~~~~~Ivv~T~~~l~~~ 127 (512)
....+...|+|+|...+...
T Consensus 93 ~~l~~L~~~~~~ivv~sv~al~~~ 116 (483)
T 3hjh_A 93 STLYQLPTMQRGVLIVPVNTLMQR 116 (483)
T ss_dssp HHHHHGGGCCSSEEEEEHHHHHBC
T ss_pred HHHHHHHhCCCCEEEEEHHHHhhc
Confidence 00124567999998887654
No 153
>4b4t_I 26S protease regulatory subunit 4 homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.65 E-value=0.011 Score=59.72 Aligned_cols=36 Identities=19% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
..++.++.+|+|+|||+.+-+++...+.+++.+..+
T Consensus 215 ~prGvLLyGPPGTGKTlLAkAiA~e~~~~fi~v~~s 250 (437)
T 4b4t_I 215 PPKGVILYGAPGTGKTLLAKAVANQTSATFLRIVGS 250 (437)
T ss_dssp CCSEEEEESSTTTTHHHHHHHHHHHHTCEEEEEESG
T ss_pred CCCCCceECCCCchHHHHHHHHHHHhCCCEEEEEHH
Confidence 457889999999999999999999998888877653
No 154
>1um8_A ATP-dependent CLP protease ATP-binding subunit CL; CLPP binding loop, chaperone; HET: ADP; 2.60A {Helicobacter pylori} SCOP: c.37.1.20
Probab=95.55 E-value=0.022 Score=56.99 Aligned_cols=32 Identities=19% Similarity=0.288 Sum_probs=27.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.+.++.+|+|+|||.++-.++..++.+++.+-
T Consensus 73 ~~ill~Gp~GtGKT~la~~la~~l~~~~~~~~ 104 (376)
T 1um8_A 73 SNILLIGPTGSGKTLMAQTLAKHLDIPIAISD 104 (376)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CCEEEECCCCCCHHHHHHHHHHHhCCCEEEec
Confidence 47899999999999999999988877766553
No 155
>2chq_A Replication factor C small subunit; DNA-binding protein, DNA replication, clamp loader, AAA+ ATP ATP-binding, nucleotide-binding; HET: ANP; 3.5A {Archaeoglobus fulgidus} PDB: 2chv_A
Probab=95.52 E-value=0.021 Score=55.19 Aligned_cols=41 Identities=15% Similarity=0.139 Sum_probs=30.4
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
++...+.+..++..+...+.++.+|+|+|||..+-.++..+
T Consensus 22 ~~~~~~~l~~~l~~~~~~~~ll~G~~G~GKt~la~~l~~~l 62 (319)
T 2chq_A 22 QDEVIQRLKGYVERKNIPHLLFSGPPGTGKTATAIALARDL 62 (319)
T ss_dssp CHHHHHHHHTTTTTTCCCCEEEESSSSSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhCCCCCeEEEECcCCcCHHHHHHHHHHHh
Confidence 45555566666665544468999999999999988887765
No 156
>3t15_A Ribulose bisphosphate carboxylase/oxygenase activ chloroplastic; photosynthesis, rubisco activase, AAA+ protein; 2.95A {Nicotiana tabacum} PDB: 3zw6_A
Probab=95.49 E-value=0.021 Score=55.02 Aligned_cols=34 Identities=15% Similarity=-0.049 Sum_probs=28.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
++..++++|+|+|||.++-+++..++.+++.+..
T Consensus 36 p~~lLl~GppGtGKT~la~aiA~~l~~~~i~v~~ 69 (293)
T 3t15_A 36 PLILGIWGGKGQGKSFQCELVFRKMGINPIMMSA 69 (293)
T ss_dssp CSEEEEEECTTSCHHHHHHHHHHHHTCCCEEEEH
T ss_pred CeEEEEECCCCCCHHHHHHHHHHHhCCCEEEEeH
Confidence 3567788999999999999999999888887764
No 157
>4b4t_M 26S protease regulatory subunit 6A; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.49 E-value=0.0097 Score=60.51 Aligned_cols=37 Identities=24% Similarity=0.398 Sum_probs=31.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
.+++.++.+|+|+|||+.+-+++...+.+++.+..+.
T Consensus 214 ~prGvLLyGPPGTGKTllAkAiA~e~~~~f~~v~~s~ 250 (434)
T 4b4t_M 214 APKGALMYGPPGTGKTLLARACAAQTNATFLKLAAPQ 250 (434)
T ss_dssp CCCEEEEESCTTSSHHHHHHHHHHHHTCEEEEEEGGG
T ss_pred CCCeeEEECcCCCCHHHHHHHHHHHhCCCEEEEehhh
Confidence 4578899999999999999999999988888877643
No 158
>3hu3_A Transitional endoplasmic reticulum ATPase; VCP, transport protein; HET: AGS; 2.20A {Homo sapiens} PDB: 3hu2_A* 3hu1_A* 1e32_A* 1s3s_A*
Probab=95.46 E-value=0.043 Score=56.87 Aligned_cols=34 Identities=21% Similarity=0.278 Sum_probs=28.0
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
..++.+|.+|+|+|||+++-+++...+.+++.+-
T Consensus 237 ~~~~vLL~GppGtGKT~lAraia~~~~~~fv~vn 270 (489)
T 3hu3_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (489)
T ss_dssp CCCEEEEECSTTSSHHHHHHHHHHHCSSEEEEEE
T ss_pred CCCcEEEECcCCCCHHHHHHHHHHHhCCCEEEEE
Confidence 3457899999999999999988888877766654
No 159
>3cf0_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48, ATP-binding, lipid-binding, nucle binding, nucleus, phosphoprotein, transport; HET: ADP; 3.00A {Mus musculus}
Probab=95.33 E-value=0.032 Score=53.94 Aligned_cols=33 Identities=18% Similarity=0.339 Sum_probs=27.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.+..+|.+|+|+|||.++-+++..++.+++.+.
T Consensus 49 ~~~vLL~Gp~GtGKT~la~ala~~~~~~~i~v~ 81 (301)
T 3cf0_A 49 SKGVLFYGPPGCGKTLLAKAIANECQANFISIK 81 (301)
T ss_dssp CSEEEEECSSSSSHHHHHHHHHHHTTCEEEEEC
T ss_pred CceEEEECCCCcCHHHHHHHHHHHhCCCEEEEE
Confidence 457899999999999999999988877666553
No 160
>1sxj_A Activator 1 95 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.31 E-value=0.051 Score=56.80 Aligned_cols=52 Identities=19% Similarity=0.172 Sum_probs=38.2
Q ss_pred CcHHHHHHHHHHHhC-----------------CCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 26 PRPYQEKSLSKMFGN-----------------GRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~-----------------~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
-++.+.+.+..++.. +..+..+|.+|+|+|||.++-.++..++.+++.+-.+
T Consensus 43 G~~~~~~~L~~~l~~~~~~~~~~~~~~g~~~~~~~~~lLL~GppGtGKTtla~~la~~l~~~~i~in~s 111 (516)
T 1sxj_A 43 GNKGSVMKLKNWLANWENSKKNSFKHAGKDGSGVFRAAMLYGPPGIGKTTAAHLVAQELGYDILEQNAS 111 (516)
T ss_dssp SCHHHHHHHHHHHHTHHHHHHTTTCCCCTTSTTSCSEEEEECSTTSSHHHHHHHHHHHTTCEEEEECTT
T ss_pred CCHHHHHHHHHHHHHhHhhchhhccccCccCCCCCcEEEEECCCCCCHHHHHHHHHHHcCCCEEEEeCC
Confidence 355666666666543 1235889999999999999999998887776666443
No 161
>3uk6_A RUVB-like 2; hexameric AAA+ ATP-ASE, DNA unwinding, hydrolase; HET: ADP; 2.95A {Homo sapiens} PDB: 2xsz_D*
Probab=95.30 E-value=0.087 Score=52.13 Aligned_cols=49 Identities=16% Similarity=0.268 Sum_probs=33.2
Q ss_pred cHHHHHHHHHH---HhCCC--CcceEEEcCCCCcHHHHHHHHHHhcCC--CEEEEE
Q 010367 27 RPYQEKSLSKM---FGNGR--ARSGIIVLPCGAGKSLVGVSAACRIKK--SCLCLA 75 (512)
Q Consensus 27 r~yQ~~al~~~---~~~~~--~~~~il~~~tG~GKTl~~i~~i~~~~~--~~Lvl~ 75 (512)
++.+.+++..+ +..+. .+..+|.+|+|+|||.++-.++..+.. +++.+.
T Consensus 49 ~~~~~~~l~~l~~~~~~~~~~~~~vLl~GppGtGKT~la~~la~~l~~~~~~~~~~ 104 (368)
T 3uk6_A 49 QLAARRAAGVVLEMIREGKIAGRAVLIAGQPGTGKTAIAMGMAQALGPDTPFTAIA 104 (368)
T ss_dssp CHHHHHHHHHHHHHHHTTCCTTCEEEEEESTTSSHHHHHHHHHHHHCSSCCEEEEE
T ss_pred hHHHHHHHHHHHHHHHcCCCCCCEEEEECCCCCCHHHHHHHHHHHhcccCCccccc
Confidence 44555554433 33332 257899999999999999998887764 555544
No 162
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=95.26 E-value=0.055 Score=60.31 Aligned_cols=41 Identities=17% Similarity=0.216 Sum_probs=29.4
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|+...+.+-.++..+..++.+|++|+|+|||.++-.++..+
T Consensus 175 r~~~i~~l~~~l~~~~~~~vlL~G~pG~GKT~la~~la~~l 215 (854)
T 1qvr_A 175 RDEEIRRVIQILLRRTKNNPVLIGEPGVGKTAIVEGLAQRI 215 (854)
T ss_dssp CHHHHHHHHHHHHCSSCCCCEEEECTTSCHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhcCCCCceEEEcCCCCCHHHHHHHHHHHH
Confidence 44444444445555555689999999999999988777655
No 163
>2qby_A CDC6 homolog 1, cell division control protein 6 homolog 1; winged-helix domain, helix-turn-helix, AAA+ ATPase domain, protein-DNA complex; HET: DNA SPD ADP; 3.35A {Sulfolobus solfataricus}
Probab=95.21 E-value=0.065 Score=53.10 Aligned_cols=53 Identities=15% Similarity=0.175 Sum_probs=38.3
Q ss_pred CCCCcHHHHHHHHHHHh----CCCCcceEEEcCCCCcHHHHHHHHHHhc------CCCEEEEE
Q 010367 23 HAQPRPYQEKSLSKMFG----NGRARSGIIVLPCGAGKSLVGVSAACRI------KKSCLCLA 75 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~----~~~~~~~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~ 75 (512)
.+.-|+.+.+.+..++. .+..+..+|.+|.|+|||..+-.++..+ ..+++.+-
T Consensus 21 ~~~gr~~e~~~l~~~l~~~~~~~~~~~vli~G~~G~GKTtl~~~l~~~~~~~~~~~~~~~~i~ 83 (386)
T 2qby_A 21 ELPHREDQIRKIASILAPLYREEKPNNIFIYGLTGTGKTAVVKFVLSKLHKKFLGKFKHVYIN 83 (386)
T ss_dssp CCTTCHHHHHHHHHSSGGGGGTCCCCCEEEEECTTSSHHHHHHHHHHHHHHHTCSSCEEEEEE
T ss_pred CCCChHHHHHHHHHHHHHHHcCCCCCeEEEECCCCCCHHHHHHHHHHHHHHHhcCCceEEEEE
Confidence 45567778888877655 3344688999999999999988777655 44555554
No 164
>1ojl_A Transcriptional regulatory protein ZRAR; response regulator, two component system, AAA domain, NTRC family, DNA-binding; HET: ATP; 3.0A {Salmonella typhimurium}
Probab=95.16 E-value=0.025 Score=54.79 Aligned_cols=32 Identities=22% Similarity=0.243 Sum_probs=24.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.+.+|.+|+|+|||.++-.+.... ..+++.+-
T Consensus 26 ~~vLi~Ge~GtGKt~lAr~i~~~~~~~~~~~v~v~ 60 (304)
T 1ojl_A 26 ATVLIHGDSGTGKELVARALHACSARSDRPLVTLN 60 (304)
T ss_dssp SCEEEESCTTSCHHHHHHHHHHHSSCSSSCCCEEE
T ss_pred CcEEEECCCCchHHHHHHHHHHhCcccCCCeEEEe
Confidence 589999999999999988777654 34555553
No 165
>1sxj_C Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=95.15 E-value=0.16 Score=49.78 Aligned_cols=41 Identities=22% Similarity=0.200 Sum_probs=29.7
Q ss_pred HHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+...+.+..++..++..+.++.+|.|+|||.++-.++..+.
T Consensus 31 ~~~~~~L~~~i~~g~~~~~ll~Gp~G~GKTtla~~la~~l~ 71 (340)
T 1sxj_C 31 NEVITTVRKFVDEGKLPHLLFYGPPGTGKTSTIVALAREIY 71 (340)
T ss_dssp HHHHHHHHHHHHTTCCCCEEEECSSSSSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCCCceEEEECCCCCCHHHHHHHHHHHHc
Confidence 34445555666666433589999999999999888887653
No 166
>4b4t_K 26S protease regulatory subunit 6B homolog; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.12 E-value=0.022 Score=57.76 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.0
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
.+++.++.+|+|+|||+.+-+++..++.+++.+..+
T Consensus 205 ~prGiLL~GPPGtGKT~lakAiA~~~~~~~~~v~~~ 240 (428)
T 4b4t_K 205 PPRGVLLYGPPGTGKTMLVKAVANSTKAAFIRVNGS 240 (428)
T ss_dssp CCCEEEEESCTTTTHHHHHHHHHHHHTCEEEEEEGG
T ss_pred CCceEEEECCCCCCHHHHHHHHHHHhCCCeEEEecc
Confidence 456789999999999999999999998888877654
No 167
>3b9p_A CG5977-PA, isoform A; AAA ATPase, ATP-binding, nucleotide-binding, hydrolase; 2.70A {Drosophila melanogaster}
Probab=94.92 E-value=0.02 Score=55.03 Aligned_cols=34 Identities=24% Similarity=0.377 Sum_probs=27.2
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.++.+|.+|+|+|||.++-.++...+.+++.+..
T Consensus 54 ~~~vll~Gp~GtGKT~la~~la~~~~~~~~~i~~ 87 (297)
T 3b9p_A 54 AKGLLLFGPPGNGKTLLARAVATECSATFLNISA 87 (297)
T ss_dssp CSEEEEESSSSSCHHHHHHHHHHHTTCEEEEEES
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHhCCCeEEeeH
Confidence 3588999999999999998888877766555443
No 168
>1sxj_E Activator 1 40 kDa subunit; clamp loader, processivity clamp, DNA sliding clamp, AAA+ at polymerase, DNA-binding protein; HET: AGS ADP; 2.85A {Saccharomyces cerevisiae} SCOP: a.80.1.1 c.37.1.20
Probab=94.85 E-value=0.11 Score=51.01 Aligned_cols=41 Identities=15% Similarity=0.055 Sum_probs=28.1
Q ss_pred cHHHHHHHHHHH-hCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMF-GNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~-~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+...+.+..++ ..++..+.++.+|.|+|||..+-.++..+
T Consensus 19 ~~~~~~~l~~~~~~~~~~~~~ll~Gp~G~GKTtl~~~la~~l 60 (354)
T 1sxj_E 19 NEELTNFLKSLSDQPRDLPHLLLYGPNGTGKKTRCMALLESI 60 (354)
T ss_dssp CHHHHHHHHTTTTCTTCCCCEEEECSTTSSHHHHHHTHHHHH
T ss_pred CHHHHHHHHHHHhhCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 344445555555 44443458999999999999988777744
No 169
>4fcw_A Chaperone protein CLPB; AAA domain; HET: ADP; 2.35A {Thermus thermophilus} PDB: 4fcv_A* 4fd2_A* 4fct_A*
Probab=94.74 E-value=0.035 Score=53.54 Aligned_cols=31 Identities=19% Similarity=0.304 Sum_probs=23.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC---CCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK---KSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~ 75 (512)
..++.+|+|+|||.++-.++..+. .+++.+-
T Consensus 49 ~~ll~G~~GtGKt~la~~la~~~~~~~~~~~~~~ 82 (311)
T 4fcw_A 49 SFLFLGPTGVGKTELAKTLAATLFDTEEAMIRID 82 (311)
T ss_dssp EEEEESCSSSSHHHHHHHHHHHHHSCGGGEEEEE
T ss_pred EEEEECCCCcCHHHHHHHHHHHHcCCCcceEEee
Confidence 689999999999999888877652 3455553
No 170
>2cvh_A DNA repair and recombination protein RADB; filament formation, homologous recombination, ATPase domain, hyperthermophIle; HET: DNA; 2.20A {Thermococcus kodakarensis} PDB: 2cvf_A*
Probab=94.66 E-value=0.04 Score=50.05 Aligned_cols=56 Identities=20% Similarity=0.240 Sum_probs=37.0
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChh-hHHHHHHH
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAV-SVDQWAFQ 87 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~-L~~Qw~~~ 87 (512)
.+++.++.++ ...-.+|.+|+|+|||..+..++...+.+++++..... -..+|.+.
T Consensus 7 ~~LD~~l~Ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~v~~i~~~~~~~~~~~~~~ 65 (220)
T 2cvh_A 7 KSLDSLLGGGFAPGVLTQVYGPYASGKTTLALQTGLLSGKKVAYVDTEGGFSPERLVQM 65 (220)
T ss_dssp HHHHHHTTSSBCTTSEEEEECSTTSSHHHHHHHHHHHHCSEEEEEESSCCCCHHHHHHH
T ss_pred HHHHHhhcCCCcCCEEEEEECCCCCCHHHHHHHHHHHcCCcEEEEECCCCCCHHHHHHH
Confidence 3566666532 23457889999999999988777755668888875431 23445443
No 171
>2dr3_A UPF0273 protein PH0284; RECA superfamily ATPase, hexamer, structural genomics; HET: ADP; 2.00A {Pyrococcus horikoshii}
Probab=94.56 E-value=0.1 Score=48.27 Aligned_cols=56 Identities=11% Similarity=0.114 Sum_probs=37.6
Q ss_pred HHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHHH
Q 010367 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
++.++.++ ...-.+|.+|+|+|||..++.++.. .+.+++++..... ..+..+.+..
T Consensus 12 LD~~l~gGl~~G~~~~i~G~~GsGKTtl~~~~~~~~~~~~~~v~~~~~e~~-~~~~~~~~~~ 72 (247)
T 2dr3_A 12 VDEILHGGIPERNVVLLSGGPGTGKTIFSQQFLWNGLKMGEPGIYVALEEH-PVQVRQNMAQ 72 (247)
T ss_dssp HHHHTTTSEETTCEEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEEESSSC-HHHHHHHHHT
T ss_pred HHHHcCCCCCCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEEccCC-HHHHHHHHHH
Confidence 45555443 2246788999999999998766643 3578888886543 5666665553
No 172
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=94.49 E-value=0.047 Score=60.01 Aligned_cols=41 Identities=22% Similarity=0.305 Sum_probs=30.3
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
++.+.+.+..++......+.+|++|+|+|||.++-.++..+
T Consensus 191 r~~~i~~l~~~l~~~~~~~vlL~G~~GtGKT~la~~la~~l 231 (758)
T 1r6b_X 191 REKELERAIQVLCRRRKNNPLLVGESGVGKTAIAEGLAWRI 231 (758)
T ss_dssp CHHHHHHHHHHHTSSSSCEEEEECCTTSSHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHhccCCCCeEEEcCCCCCHHHHHHHHHHHH
Confidence 45555555556665555689999999999999987777643
No 173
>2ce7_A Cell division protein FTSH; metalloprotease; HET: ADP; 2.44A {Thermotoga maritima} SCOP: a.269.1.1 c.37.1.20 PDB: 2cea_A* 3kds_E*
Probab=94.46 E-value=0.081 Score=54.52 Aligned_cols=33 Identities=21% Similarity=0.358 Sum_probs=27.2
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
+++.+|.+|+|+|||+.+-+++...+.+++.+.
T Consensus 49 p~gvLL~GppGtGKT~Laraia~~~~~~f~~is 81 (476)
T 2ce7_A 49 PKGILLVGPPGTGKTLLARAVAGEANVPFFHIS 81 (476)
T ss_dssp CSEEEEECCTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred CCeEEEECCCCCCHHHHHHHHHHHcCCCeeeCC
Confidence 357899999999999999888887777766554
No 174
>1g5t_A COB(I)alamin adenosyltransferase; P-loop protein, cobalamin biosynthesis, RECA fold; HET: ATP; 1.80A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1g5r_A* 1g64_A*
Probab=94.27 E-value=0.15 Score=45.69 Aligned_cols=125 Identities=13% Similarity=0.012 Sum_probs=64.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEch
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTTY 121 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T~ 121 (512)
..++..+.|.|||.+++.++.+. +.+|+|+--.+.-...=...+-.-++ +.....+.. +. ..+.
T Consensus 30 ~i~v~tG~GkGKTTaA~GlalRA~g~G~rV~~vQF~Kg~~~~gE~~~l~~L~-----v~~~~~g~g--f~------~~~~ 96 (196)
T 1g5t_A 30 IIIVFTGNGKGKTTAAFGTAARAVGHGKNVGVVQFIKGTWPNGERNLLEPHG-----VEFQVMATG--FT------WETQ 96 (196)
T ss_dssp CEEEEESSSSCHHHHHHHHHHHHHHTTCCEEEEESSCCSSCCHHHHHHGGGT-----CEEEECCTT--CC------CCGG
T ss_pred eEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEEeeCCCCCccHHHHHHhCC-----cEEEEcccc--cc------cCCC
Confidence 78888999999999998887553 67899986444210000111212111 222222211 10 1111
Q ss_pred hhhhccCCCchhHHHHHHHHhcCCccEEEEcCC------CCCCchHHHHHHHhcccceEEEEcccCC
Q 010367 122 NMVAFGGKRSEESEKIIEEIRNREWGLLLMDEV------HVVPAHMFRKVISLTKSHCKLGLTATLV 182 (512)
Q Consensus 122 ~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEa------H~~~~~~~~~~l~~~~~~~~l~LTATp~ 182 (512)
+.-..............+.+....+++||+||. ..+..+....++..-....-+.+|+--.
T Consensus 97 ~~~~~~~~a~~~l~~a~~~l~~~~yDlvILDEi~~al~~g~l~~~ev~~~l~~Rp~~~~vIlTGr~a 163 (196)
T 1g5t_A 97 NREADTAACMAVWQHGKRMLADPLLDMVVLDELTYMVAYDYLPLEEVISALNARPGHQTVIITGRGC 163 (196)
T ss_dssp GHHHHHHHHHHHHHHHHHHTTCTTCSEEEEETHHHHHHTTSSCHHHHHHHHHTSCTTCEEEEECSSC
T ss_pred CcHHHHHHHHHHHHHHHHHHhcCCCCEEEEeCCCccccCCCCCHHHHHHHHHhCcCCCEEEEECCCC
Confidence 100000000001223344455578999999999 4455555555666555556677777543
No 175
>1pjr_A PCRA; DNA repair, DNA replication, SOS response, helicase, ATP- binding, DNA-binding; 2.50A {Geobacillus stearothermophilus} SCOP: c.37.1.19 c.37.1.19 PDB: 1qhg_A* 3pjr_A* 2pjr_A* 1qhh_B* 1qhh_D* 1qhh_A* 1qhh_C* 2pjr_B*
Probab=94.26 E-value=0.068 Score=58.36 Aligned_cols=75 Identities=15% Similarity=0.106 Sum_probs=55.2
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc----C---CCEEEEEcChhhHHHHHHHHHHhhCCC--
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI----K---KSCLCLATNAVSVDQWAFQFKLWSTIQ-- 95 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~----~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~-- 95 (512)
.|.|.|++|+.. .. .+.+|.++.|+|||.+...-+..+ + ..+|+|+.|...+....+.+....+..
T Consensus 11 ~Ln~~Q~~av~~--~~---g~~lV~AgAGSGKT~vL~~ri~~ll~~~~~~p~~IL~vTFTnkAA~Em~~Rl~~~l~~~~~ 85 (724)
T 1pjr_A 11 HLNKEQQEAVRT--TE---GPLLIMAGAGSGKTRVLTHRIAYLMAEKHVAPWNILAITFTNKAAREMRERVQSLLGGAAE 85 (724)
T ss_dssp TSCHHHHHHHHC--CS---SCEEEEECTTSCHHHHHHHHHHHHHHTTCCCGGGEEEEESSHHHHHHHHHHHHHHHGGGGT
T ss_pred hCCHHHHHHHhC--CC---CCEEEEEcCCCCHHHHHHHHHHHHHHhcCCCHHHeEEEeccHHHHHHHHHHHHHHhccccc
Confidence 688999999985 22 378999999999999876544322 2 479999999998999998888765432
Q ss_pred CCcEEEEcC
Q 010367 96 DDQICRFTS 104 (512)
Q Consensus 96 ~~~v~~~~~ 104 (512)
...|..|++
T Consensus 86 ~~~v~Tfhs 94 (724)
T 1pjr_A 86 DVWISTFHS 94 (724)
T ss_dssp TSEEEEHHH
T ss_pred CcEEeeHHH
Confidence 234555554
No 176
>1n0w_A DNA repair protein RAD51 homolog 1; DNA repair, homologous recombination, breast cancer susceptibility, RECA-like ATPase, protein complex; HET: DNA MSE; 1.70A {Homo sapiens} SCOP: c.37.1.11
Probab=94.20 E-value=0.22 Score=45.73 Aligned_cols=46 Identities=15% Similarity=0.242 Sum_probs=32.5
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh--c-------CCCEEEEEcCh
Q 010367 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR--I-------KKSCLCLATNA 78 (512)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~--~-------~~~~Lvl~P~~ 78 (512)
.++.++.++ ...-..|.+|+|+|||..+..++.. . ...++++....
T Consensus 12 ~LD~~l~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~g~~~~~~~~i~~~~ 68 (243)
T 1n0w_A 12 ELDKLLQGGIETGSITEMFGEFRTGKTQICHTLAVTCQLPIDRGGGEGKAMYIDTEG 68 (243)
T ss_dssp HHHHHTTTSEETTSEEEEECCTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred HHHHhhcCCCcCCeEEEEECCCCCcHHHHHHHHHHHHhCchhcCCCCCeEEEEECCC
Confidence 466666543 2346788999999999998888874 2 35677777543
No 177
>2z43_A DNA repair and recombination protein RADA; archaea, filament, DNA binding, molecular SWI RECA, DMC1; HET: DNA; 1.93A {Sulfolobus solfataricus} PDB: 2bke_A* 2dfl_A* 2zub_A* 2zuc_A* 2zud_A*
Probab=94.05 E-value=0.15 Score=49.78 Aligned_cols=59 Identities=12% Similarity=0.150 Sum_probs=39.2
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhh-HHHHHHHHHH
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVS-VDQWAFQFKL 90 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L-~~Qw~~~~~~ 90 (512)
..+..++.++ ...-.+|.+|+|+|||..++.++... +++++++.....+ ..+..+.+..
T Consensus 94 ~~LD~~L~GGl~~G~i~~i~G~~GsGKT~la~~la~~~~~~~~~gg~~~~vlyi~~e~~~~~~~l~~~~~~ 164 (324)
T 2z43_A 94 QALDGLLAGGIETRTMTEFFGEFGSGKTQLCHQLSVNVQLPPEKGGLSGKAVYIDTEGTFRWERIENMAKA 164 (324)
T ss_dssp HHHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hhHHHhcCCCCCCCcEEEEECCCCCCHhHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3566666543 23467899999999999998888764 4578888865432 3444443443
No 178
>2kjq_A DNAA-related protein; solution structure, NESG, structural genomics, PSI-2, protei structure initiative; NMR {Neisseria meningitidis serogroup B}
Probab=93.41 E-value=0.086 Score=45.11 Aligned_cols=24 Identities=21% Similarity=0.001 Sum_probs=19.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
...+|.+|+|+|||..+-+++...
T Consensus 37 ~~~~l~G~~G~GKTtL~~~i~~~~ 60 (149)
T 2kjq_A 37 QFIYVWGEEGAGKSHLLQAWVAQA 60 (149)
T ss_dssp SEEEEESSSTTTTCHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHH
Confidence 478899999999998876666543
No 179
>1xp8_A RECA protein, recombinase A; recombination, radioresistance, DNA-repair, ATPase, DNA-BIND protein, DNA binding protein; HET: AGS; 2.50A {Deinococcus radiodurans} SCOP: c.37.1.11 d.48.1.1
Probab=93.31 E-value=0.27 Score=48.84 Aligned_cols=52 Identities=23% Similarity=0.368 Sum_probs=37.2
Q ss_pred HHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHH
Q 010367 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQW 84 (512)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw 84 (512)
..|+.++. ++ +..-.+|.+|+|+|||..++.++... +.+++++...-. ..++
T Consensus 60 ~~LD~~Lg~GGl~~G~li~I~G~pGsGKTtlal~la~~~~~~g~~vlyi~~E~s-~~~~ 117 (366)
T 1xp8_A 60 LSLDLALGVGGIPRGRITEIYGPESGGKTTLALAIVAQAQKAGGTCAFIDAEHA-LDPV 117 (366)
T ss_dssp HHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC-CCHH
T ss_pred HHHHHHhCCCCccCCcEEEEEcCCCCChHHHHHHHHHHHHHCCCeEEEEECCCC-hhHH
Confidence 45777776 33 33467888999999999988877543 578998886654 4444
No 180
>3dm5_A SRP54, signal recognition 54 kDa protein; protein-RNA, signal recognition particle, SRP-GTPase, protein targeting, cytoplasm, GTP-binding; HET: GDP; 2.51A {Pyrococcus furiosus}
Probab=93.22 E-value=0.52 Score=47.81 Aligned_cols=32 Identities=16% Similarity=0.008 Sum_probs=24.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.-.++++++|+|||.++..++..+ ++++++++
T Consensus 101 ~vIlivG~~G~GKTTt~~kLA~~l~~~G~kVllv~ 135 (443)
T 3dm5_A 101 TILLMVGIQGSGKTTTVAKLARYFQKRGYKVGVVC 135 (443)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred eEEEEECcCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 456788999999999987777544 56777777
No 181
>3kl4_A SRP54, signal recognition 54 kDa protein; signal recognition particle, SRP, SRP54, FFH, signal sequenc peptide; 3.50A {Sulfolobus solfataricus} PDB: 1qzx_A 1qzw_A
Probab=93.22 E-value=0.43 Score=48.33 Aligned_cols=32 Identities=19% Similarity=-0.022 Sum_probs=23.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.-.++++++|+|||.++..++..+ ++++++++
T Consensus 98 ~vI~lvG~~GsGKTTt~~kLA~~l~~~G~kVllv~ 132 (433)
T 3kl4_A 98 FIIMLVGVQGSGKTTTAGKLAYFYKKRGYKVGLVA 132 (433)
T ss_dssp EEEEECCCTTSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 346777999999999987666443 56777766
No 182
>3hr8_A Protein RECA; alpha and beta proteins (A/B, A+B), ATP-binding, cytoplasm, damage, DNA recombination, DNA repair, DNA-binding; 1.95A {Thermotoga maritima}
Probab=93.18 E-value=0.36 Score=47.60 Aligned_cols=49 Identities=16% Similarity=0.182 Sum_probs=36.4
Q ss_pred HHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhh
Q 010367 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVS 80 (512)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L 80 (512)
..|+.++. ++ +..-.+|.+|+|+|||..++.++.. .+++++++.+...+
T Consensus 47 ~~LD~~Lg~GGi~~G~i~~I~GppGsGKSTLal~la~~~~~~gg~VlyId~E~s~ 101 (356)
T 3hr8_A 47 LAIDIATGVGGYPRGRIVEIFGQESSGKTTLALHAIAEAQKMGGVAAFIDAEHAL 101 (356)
T ss_dssp HHHHHHTSSSSEETTEEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCcEEEEECCCCCCHHHHHHHHHHHHHhcCCeEEEEeccccc
Confidence 56888887 44 2345678899999999998877755 35789998876554
No 183
>2zr9_A Protein RECA, recombinase A; recombination, RECA mutants, DNA-repair, ATP-binding, DNA DA recombination, DNA repair, DNA-binding; HET: DTP; 2.50A {Mycobacterium smegmatis str} PDB: 2zr0_A* 2zra_A* 2zrb_A 2zrm_A* 1ubc_A* 1ubf_A* 1ubg_A* 1ube_A* 2g88_A* 2odw_A* 2oe2_A 2oep_A* 2oes_A 2ofo_A 2zr7_A 2odn_A* 2zrn_A 2zro_A* 2zrp_A* 2zre_A* ...
Probab=93.15 E-value=0.31 Score=48.01 Aligned_cols=49 Identities=24% Similarity=0.274 Sum_probs=35.8
Q ss_pred HHHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChh
Q 010367 31 EKSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAV 79 (512)
Q Consensus 31 ~~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~ 79 (512)
...++.++. ++ +.+-.+|.+|+|+|||..++.++... +++++++.....
T Consensus 46 ~~~LD~~Lg~GGl~~G~iv~I~G~pGsGKTtLal~la~~~~~~g~~vlyi~~E~~ 100 (349)
T 2zr9_A 46 SISLDVALGIGGLPRGRVIEIYGPESSGKTTVALHAVANAQAAGGIAAFIDAEHA 100 (349)
T ss_dssp CHHHHHHTSSSSEETTSEEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEESSCC
T ss_pred CHHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEECCCC
Confidence 346777777 43 33467889999999999988777543 568888886543
No 184
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=93.11 E-value=0.35 Score=48.35 Aligned_cols=46 Identities=17% Similarity=0.273 Sum_probs=32.9
Q ss_pred CCCCCcHHHHHHHHHHH-h----C--CCCcceEE--EcCCCCcHHHHHHHHHHhc
Q 010367 22 PHAQPRPYQEKSLSKMF-G----N--GRARSGII--VLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 22 ~~~~Lr~yQ~~al~~~~-~----~--~~~~~~il--~~~tG~GKTl~~i~~i~~~ 67 (512)
..+.=|+.+.+.+..++ . + ...+..+| .+|.|+|||..+-.++...
T Consensus 22 ~~l~gR~~el~~l~~~l~~~~~~~~~~~~~~~li~i~G~~G~GKT~L~~~~~~~~ 76 (412)
T 1w5s_A 22 PELRVRRGEAEALARIYLNRLLSGAGLSDVNMIYGSIGRVGIGKTTLAKFTVKRV 76 (412)
T ss_dssp SSCSSSCHHHHHHHHHHHHHHHTSSCBCCEEEEEECTTCCSSSHHHHHHHHHHHH
T ss_pred CCCCChHHHHHHHHHHHhHHHhcCCCCCCCEEEEeCcCcCCCCHHHHHHHHHHHH
Confidence 34555778888887776 3 2 23356777 8999999999987777554
No 185
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=93.04 E-value=0.17 Score=55.40 Aligned_cols=35 Identities=20% Similarity=0.260 Sum_probs=28.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.+++.++.+|+|+|||+.+=+++..++.+++.+..
T Consensus 237 ~p~GILL~GPPGTGKT~LAraiA~elg~~~~~v~~ 271 (806)
T 3cf2_A 237 PPRGILLYGPPGTGKTLIARAVANETGAFFFLING 271 (806)
T ss_dssp CCCEEEEECCTTSCHHHHHHHHHTTTTCEEEEEEH
T ss_pred CCCeEEEECCCCCCHHHHHHHHHHHhCCeEEEEEh
Confidence 34678999999999999999999888877666643
No 186
>1u94_A RECA protein, recombinase A; homologous recombination, ATPase, DNA repair, DNA binding protein; 1.90A {Escherichia coli} SCOP: c.37.1.11 d.48.1.1 PDB: 1u98_A 1u99_A 1xms_A* 1xmv_A* 2rec_A 2reb_A 1n03_A* 1rea_A 1aa3_A
Probab=93.00 E-value=0.36 Score=47.71 Aligned_cols=49 Identities=22% Similarity=0.282 Sum_probs=35.7
Q ss_pred HHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhh
Q 010367 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVS 80 (512)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L 80 (512)
..|..++. ++ +.+-.+|.+++|+|||..++.++.. .+.+++++...-.+
T Consensus 49 ~~LD~~Lg~GGl~~G~ii~I~G~pGsGKTtLal~la~~~~~~g~~vlyid~E~s~ 103 (356)
T 1u94_A 49 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHAL 103 (356)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEESSCCC
T ss_pred HHHHHHhccCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEeCCCCc
Confidence 45777776 33 3346788999999999999887754 35689998875443
No 187
>3k1j_A LON protease, ATP-dependent protease LON; ATP-binding, nucleotide-binding, Pro hydrolase; HET: ADP PE8; 2.00A {Thermococcus onnurineus}
Probab=92.86 E-value=0.61 Score=49.62 Aligned_cols=34 Identities=21% Similarity=0.292 Sum_probs=25.6
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.+...+..+ ...+|.+|+|+|||..+-.++..+.
T Consensus 52 ~l~~~i~~g--~~vll~Gp~GtGKTtlar~ia~~l~ 85 (604)
T 3k1j_A 52 VIKTAANQK--RHVLLIGEPGTGKSMLGQAMAELLP 85 (604)
T ss_dssp HHHHHHHTT--CCEEEECCTTSSHHHHHHHHHHTSC
T ss_pred hccccccCC--CEEEEEeCCCCCHHHHHHHHhccCC
Confidence 333445555 4899999999999999988887653
No 188
>2r8r_A Sensor protein; KDPD, PFAM02702, MCSG, structural genomics, protein structure initiative, midwest center for structural genomics, kinase; 2.30A {Pseudomonas syringae PV}
Probab=92.83 E-value=2.5 Score=38.66 Aligned_cols=32 Identities=16% Similarity=0.051 Sum_probs=23.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
-+.++.++.|.|||.+++.++..+ +.+++++.
T Consensus 7 l~I~~~~kgGvGKTt~a~~la~~l~~~G~~V~v~d 41 (228)
T 2r8r_A 7 LKVFLGAAPGVGKTYAMLQAAHAQLRQGVRVMAGV 41 (228)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEECCCCCcHHHHHHHHHHHHHHCCCCEEEEE
Confidence 357888999999999988777543 45665444
No 189
>1r6b_X CLPA protein; AAA+, N-terminal domain, CLPS, crystal, binding mechanism, hydrolase; HET: ADP; 2.25A {Escherichia coli} SCOP: a.174.1.1 c.37.1.20 c.37.1.20 PDB: 1ksf_X*
Probab=92.74 E-value=0.13 Score=56.33 Aligned_cols=30 Identities=27% Similarity=0.260 Sum_probs=24.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
+.++.+|+|+|||.++-.++..++.+++.+
T Consensus 490 ~~ll~G~~GtGKT~la~~la~~l~~~~~~i 519 (758)
T 1r6b_X 490 SFLFAGPTGVGKTEVTVQLSKALGIELLRF 519 (758)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTCEEEEE
T ss_pred EEEEECCCCCcHHHHHHHHHHHhcCCEEEE
Confidence 579999999999999988888776655544
No 190
>1v5w_A DMC1, meiotic recombination protein DMC1/LIM15 homolog; DNA-binding protein, ring protein, octamer, AAA ATPase; 3.20A {Homo sapiens} SCOP: c.37.1.11 PDB: 2zjb_A
Probab=92.57 E-value=0.55 Score=46.10 Aligned_cols=59 Identities=12% Similarity=0.092 Sum_probs=38.4
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcChhh-HHHHHHHHHH
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNAVS-VDQWAFQFKL 90 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~~L-~~Qw~~~~~~ 90 (512)
..+..++.++ ...-.+|.+|+|+|||..+..++... +++++++.....+ ..+..+....
T Consensus 109 ~~LD~~LgGGl~~G~i~~I~G~~GsGKTtla~~la~~~~~~~~~gg~~~~vlyi~~E~~~~~~~l~~~~~~ 179 (343)
T 1v5w_A 109 QEFDKLLGGGIESMAITEAFGEFRTGKTQLSHTLCVTAQLPGAGGYPGGKIIFIDTENTFRPDRLRDIADR 179 (343)
T ss_dssp HHHHHHTTSSBCSSEEEEEECCTTCTHHHHHHHHHHHTTSCBTTTBCCCEEEEEESSSCCCHHHHHHHHHH
T ss_pred hhHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCeEEEEECCCCCCHHHHHHHHHH
Confidence 3466666543 23456888999999999998888752 4578888865532 3344333333
No 191
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=92.35 E-value=0.068 Score=58.72 Aligned_cols=23 Identities=35% Similarity=0.365 Sum_probs=20.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+.++++|+|+|||.++-+++..+
T Consensus 523 ~~Ll~Gp~GtGKT~lA~ala~~l 545 (758)
T 3pxi_A 523 SFIFLGPTGVGKTELARALAESI 545 (758)
T ss_dssp EEEEESCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 58999999999999988887665
No 192
>3io5_A Recombination and repair protein; storage dimer, inactive conformation, RECA like core domain, binding, DNA damage, DNA recombination; 2.40A {Enterobacteria phage T4}
Probab=92.18 E-value=0.7 Score=44.65 Aligned_cols=100 Identities=13% Similarity=0.162 Sum_probs=58.8
Q ss_pred HHHHHHHh----CCCC-cceEEEcCCCCcHHHHHHHHHHhc-----CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEE
Q 010367 32 KSLSKMFG----NGRA-RSGIIVLPCGAGKSLVGVSAACRI-----KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICR 101 (512)
Q Consensus 32 ~al~~~~~----~~~~-~~~il~~~tG~GKTl~~i~~i~~~-----~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~ 101 (512)
..|+.++. ++-. ....|.+|+|+|||..++.++... +++++++.....+... ..++ ++++..+
T Consensus 12 ~~LD~~LGg~~~GGl~~GiteI~G~pGsGKTtL~Lq~~~~~~~~g~g~~vlyId~E~s~~~~---ra~~-lGvd~d~--- 84 (333)
T 3io5_A 12 PMMNIALSGEITGGMQSGLLILAGPSKSFKSNFGLTMVSSYMRQYPDAVCLFYDSEFGITPA---YLRS-MGVDPER--- 84 (333)
T ss_dssp HHHHHHHHSSTTCCBCSEEEEEEESSSSSHHHHHHHHHHHHHHHCTTCEEEEEESSCCCCHH---HHHH-TTCCGGG---
T ss_pred HHHHHHhCCCCCCCCcCCeEEEECCCCCCHHHHHHHHHHHHHhcCCCceEEEEeccchhhHH---HHHH-hCCCHHH---
Confidence 45777787 5421 245778999999999988777543 5689999877665432 2333 3554333
Q ss_pred EcCCccccccCCCeEEEEchhhhhccCCCchhHHHHHHH---HhcCCccEEEEcCCCCCC
Q 010367 102 FTSDSKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEE---IRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 102 ~~~~~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~---l~~~~~~lvIiDEaH~~~ 158 (512)
+++..+..+... ...+.+. +....+++||||=+..+.
T Consensus 85 --------------llv~~~~~~E~~------~l~i~~~l~~i~~~~~~lvVIDSI~aL~ 124 (333)
T 3io5_A 85 --------------VIHTPVQSLEQL------RIDMVNQLDAIERGEKVVVFIDSLGNLA 124 (333)
T ss_dssp --------------EEEEECSBHHHH------HHHHHHHHHTCCTTCCEEEEEECSTTCB
T ss_pred --------------eEEEcCCCHHHH------HHHHHHHHHHhhccCceEEEEecccccc
Confidence 333333222110 0112222 344578999999888764
No 193
>3cf2_A TER ATPase, transitional endoplasmic reticulum ATPase, valosi; AAA, CDC48, ERAD, transport protein; HET: ADP ANP; 3.50A {Mus musculus} PDB: 3cf1_A* 3cf3_A* 1r7r_A*
Probab=91.66 E-value=0.2 Score=54.80 Aligned_cols=34 Identities=18% Similarity=0.320 Sum_probs=28.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
..++.++.+|+|+|||+.+-+++...+.+++.+.
T Consensus 510 ~~~gvLl~GPPGtGKT~lAkaiA~e~~~~f~~v~ 543 (806)
T 3cf2_A 510 PSKGVLFYGPPGCGKTLLAKAIANECQANFISIK 543 (806)
T ss_dssp CCSCCEEESSTTSSHHHHHHHHHHTTTCEEEECC
T ss_pred CCceEEEecCCCCCchHHHHHHHHHhCCceEEec
Confidence 3467899999999999999999999988777654
No 194
>1qvr_A CLPB protein; coiled coil, AAA ATPase, chaperone; HET: ANP; 3.00A {Thermus thermophilus} SCOP: a.174.1.1 c.37.1.20 c.37.1.20
Probab=91.46 E-value=0.13 Score=57.37 Aligned_cols=30 Identities=20% Similarity=0.561 Sum_probs=23.0
Q ss_pred HhcCCccEEEEcCCCCCCchHHHHHHHhcc
Q 010367 141 IRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (512)
Q Consensus 141 l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~ 170 (512)
+.....+++++||++.+....+..++..+.
T Consensus 656 ~~~~~~~vl~lDEi~~l~~~~~~~Ll~~l~ 685 (854)
T 1qvr_A 656 VRRRPYSVILFDEIEKAHPDVFNILLQILD 685 (854)
T ss_dssp HHHCSSEEEEESSGGGSCHHHHHHHHHHHT
T ss_pred HHhCCCeEEEEecccccCHHHHHHHHHHhc
Confidence 334567899999999998877777766664
No 195
>2r6a_A DNAB helicase, replicative helicase; replication, DNAB; 2.90A {Geobacillus stearothermophilus} PDB: 2r6c_A 2r6d_A 2r6e_A 2vyf_A 2vye_A
Probab=91.38 E-value=0.63 Score=47.55 Aligned_cols=55 Identities=15% Similarity=0.221 Sum_probs=37.0
Q ss_pred HHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHH
Q 010367 33 SLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 33 al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
.+..++.+ .+..-.+|.+++|+|||..++.++... +.+|+++...-. ..|+...+
T Consensus 192 ~LD~~~gGl~~G~liiI~G~pG~GKTtl~l~ia~~~~~~~g~~Vl~~s~E~s-~~~l~~r~ 251 (454)
T 2r6a_A 192 ELDRMTSGFQRSDLIIVAARPSVGKTAFALNIAQNVATKTNENVAIFSLEMS-AQQLVMRM 251 (454)
T ss_dssp HHHHHHSSBCTTCEEEEECCTTSCHHHHHHHHHHHHHHHSSCCEEEEESSSC-HHHHHHHH
T ss_pred HHHhhcCCCCCCCEEEEECCCCCCHHHHHHHHHHHHHHhCCCcEEEEECCCC-HHHHHHHH
Confidence 46666632 123467888999999999988777543 458999886543 55666554
No 196
>2q6t_A DNAB replication FORK helicase; hydrolase; 2.90A {Thermus aquaticus}
Probab=91.22 E-value=1.1 Score=45.52 Aligned_cols=64 Identities=16% Similarity=0.127 Sum_probs=41.4
Q ss_pred HHHHHHHhCC-CCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHHH-HhhCCCC
Q 010367 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQFK-LWSTIQD 96 (512)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~~-~~~~~~~ 96 (512)
..+..++++- +..-.+|++++|+|||..++.++... +.+|+++...- -..|+...+. ...+++.
T Consensus 188 ~~LD~~lgGl~~G~l~ii~G~pg~GKT~lal~ia~~~a~~~g~~vl~~slE~-~~~~l~~R~~~~~~~i~~ 257 (444)
T 2q6t_A 188 KELDQLIGTLGPGSLNIIAARPAMGKTAFALTIAQNAALKEGVGVGIYSLEM-PAAQLTLRMMCSEARIDM 257 (444)
T ss_dssp HHHHHHHCCCCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCCCEEEEESSS-CHHHHHHHHHHHHTTCCT
T ss_pred HhhhhhcCCcCCCcEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEECCC-CHHHHHHHHHHHHcCCCH
Confidence 3466677321 23456889999999999988777532 46899988654 3666666553 3344543
No 197
>1u0j_A DNA replication protein; AAA+ protein, P-loop atpases, helicase; HET: DNA ADP; 2.10A {Adeno-associated virus - 2} SCOP: c.37.1.20 PDB: 1s9h_A
Probab=91.09 E-value=0.45 Score=44.81 Aligned_cols=35 Identities=11% Similarity=0.044 Sum_probs=25.5
Q ss_pred HHHHHHHhCC-C-CcceEEEcCCCCcHHHHHHHHHHh
Q 010367 32 KSLSKMFGNG-R-ARSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 32 ~al~~~~~~~-~-~~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
.++..++.+. . ....++.+|+|+|||+.+.+++..
T Consensus 91 ~~l~~~l~~~~~~~n~~~l~GppgtGKt~~a~ala~~ 127 (267)
T 1u0j_A 91 SVFLGWATKKFGKRNTIWLFGPATTGKTNIAEAIAHT 127 (267)
T ss_dssp HHHHHHHTTCSTTCCEEEEECSTTSSHHHHHHHHHHH
T ss_pred HHHHHHHhCCCCCCcEEEEECCCCCCHHHHHHHHHhh
Confidence 3455566654 2 235788899999999999988864
No 198
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=91.00 E-value=0.63 Score=55.74 Aligned_cols=47 Identities=23% Similarity=0.323 Sum_probs=35.9
Q ss_pred HHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChh
Q 010367 33 SLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (512)
Q Consensus 33 al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (512)
.+..++. .+ +++..++++|+|+|||..+..++.. .+.+++++...-.
T Consensus 1414 ~LD~lLG~GGi~~g~~vll~GppGtGKT~LA~ala~ea~~~G~~v~Fi~~e~~ 1466 (2050)
T 3cmu_A 1414 SLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA 1466 (2050)
T ss_dssp HHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC
T ss_pred HHHHhcCCCCccCCeEEEEECCCCCCHHHHHHHHHHHHHHcCCcEEEEEcccc
Confidence 4777887 43 4568999999999999998777643 4568888886654
No 199
>1ofh_A ATP-dependent HSL protease ATP-binding subunit HSLU; chaperone, hydrolase, ATP-binding; HET: ADP; 2.5A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1ofi_A*
Probab=90.79 E-value=0.38 Score=45.91 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=28.2
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
..+.++.+|+|+|||.++-.++..++.+++.+-.
T Consensus 50 ~~~vll~G~~GtGKT~la~~la~~l~~~~~~i~~ 83 (310)
T 1ofh_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (310)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHHTCCEEEEEG
T ss_pred CceEEEECCCCCCHHHHHHHHHHHhCCCEEEEcc
Confidence 4589999999999999998888888777666544
No 200
>2eyq_A TRCF, transcription-repair coupling factor; MFD, SF2 ATPase, hydrolase; HET: EPE; 3.20A {Escherichia coli} SCOP: b.34.18.1 c.37.1.19 c.37.1.19 c.37.1.19 c.37.1.19 d.315.1.1
Probab=90.17 E-value=0.45 Score=54.63 Aligned_cols=79 Identities=11% Similarity=0.120 Sum_probs=60.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcc---c--------------
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK---E-------------- 108 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~---~-------------- 108 (512)
..+.+-+|+|||++...++....+++|||+|+...+.||+++|+.|+ +..|..|-+... +
T Consensus 20 ~~l~G~~gs~ka~~~a~l~~~~~~p~lvv~~~~~~A~~l~~el~~f~---~~~V~~fP~~~~~~y~~~~p~~~i~~~Rl~ 96 (1151)
T 2eyq_A 20 RLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQFT---DQMVMNLADWETLPYDSFSPHQDIISSRLS 96 (1151)
T ss_dssp CCBCCCCTTHHHHHHHHHHHSSSSEEEEEESSHHHHHHHHHHHGGGC---SSCEEECCCCCSCTTCSSCCCHHHHHHHHH
T ss_pred EEEeCCchHHHHHHHHHHHHhhCCCEEEEeCCHHHHHHHHHHHHhhc---CCcEEEecccccCcccccCCChHHHHHHHH
Confidence 56788999999999998888778899999999999999999999985 235665543210 0
Q ss_pred ---cc-cCCCeEEEEchhhhhcc
Q 010367 109 ---RF-RGNAGVVVTTYNMVAFG 127 (512)
Q Consensus 109 ---~~-~~~~~Ivv~T~~~l~~~ 127 (512)
.+ .+..+|+|+|...+...
T Consensus 97 ~L~~L~~~~~~viV~~~~al~~~ 119 (1151)
T 2eyq_A 97 TLYQLPTMQRGVLIVPVNTLMQR 119 (1151)
T ss_dssp HHHHGGGCCSEEEEEEHHHHTBB
T ss_pred HHHHHHhCCCCEEEEeHHHHhcc
Confidence 01 23467999998877654
No 201
>2w58_A DNAI, primosome component (helicase loader); ATP-binding, nucleotide-binding, hydrolase; HET: ADP; 2.50A {Geobacillus kaustophilus HTA426}
Probab=89.83 E-value=0.47 Score=42.31 Aligned_cols=32 Identities=19% Similarity=0.184 Sum_probs=24.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.+.+|.+|+|+|||..+..++..+ +.+++++.
T Consensus 55 ~~~~l~G~~GtGKT~la~~i~~~~~~~~~~~~~~~ 89 (202)
T 2w58_A 55 KGLYLHGSFGVGKTYLLAAIANELAKRNVSSLIVY 89 (202)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEE
Confidence 588999999999999987777554 34665553
No 202
>3u4q_A ATP-dependent helicase/nuclease subunit A; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_A*
Probab=89.74 E-value=0.33 Score=56.22 Aligned_cols=64 Identities=14% Similarity=0.111 Sum_probs=49.1
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---C------CCEEEEEcChhhHHHHHHHHHHh
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---K------KSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~------~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..++.|-|.+++..- + ++.+|.+..|||||.+.+.-+..+ + .++|++++|...+....+.+...
T Consensus 8 ~~~~t~eQ~~~i~~~--~---~~~~v~a~AGSGKT~vl~~ri~~ll~~~~~~~~~~~il~~Tft~~aa~e~~~ri~~~ 80 (1232)
T 3u4q_A 8 DSTWTDDQWNAIVST--G---QDILVAAAAGSGKTAVLVERMIRKITAEENPIDVDRLLVVTFTNASAAEMKHRIAEA 80 (1232)
T ss_dssp --CCCHHHHHHHHCC--S---SCEEEEECTTCCHHHHHHHHHHHHHSCSSSCCCGGGEEEECSSHHHHHHHHHHHHHH
T ss_pred CCCCCHHHHHHHhCC--C---CCEEEEecCCCcHHHHHHHHHHHHHhcCCCCCCccceEEEeccHHHHHHHHHHHHHH
Confidence 468999999999852 2 388999999999999976543322 1 37999999999998888888764
No 203
>1pzn_A RAD51, DNA repair and recombination protein RAD51, RADA; heptameric ring, heptamer, ring, oligomer, RAD51 polymerizat motif; HET: DNA; 2.85A {Pyrococcus furiosus} SCOP: a.60.4.1 c.37.1.11
Probab=89.68 E-value=0.98 Score=44.40 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=33.3
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcCh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (512)
.+++.++..+ ...-..|++|.|+|||..+..++... +++++++....
T Consensus 118 ~~LD~lL~ggi~~G~i~~I~G~~GsGKTTL~~~l~~~~~~~~~~Gg~~G~vi~i~~e~ 175 (349)
T 1pzn_A 118 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 175 (349)
T ss_dssp HHHHHHHTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTSCSCEEEEEESSS
T ss_pred HHHHHHhcCCCCCCeEEEEECCCCCCHHHHHHHHHHHhccchhcCCCCCeEEEEeCCC
Confidence 3566777643 33456788999999999988887665 24677777543
No 204
>1tue_A Replication protein E1; helicase, replication, E1E2 complex, AAA+ protein; 2.10A {Human papillomavirus type 18} SCOP: c.37.1.20
Probab=89.63 E-value=0.3 Score=44.07 Aligned_cols=40 Identities=20% Similarity=0.228 Sum_probs=28.5
Q ss_pred HHHHHHHHhCCC-CcceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 31 EKSLSKMFGNGR-ARSGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 31 ~~al~~~~~~~~-~~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
...+..++.+-. .+..++.+|+|+|||..+.+++..+.++
T Consensus 45 ~~~l~~~~~~iPkkn~ili~GPPGtGKTt~a~ala~~l~g~ 85 (212)
T 1tue_A 45 LGALKSFLKGTPKKNCLVFCGPANTGKSYFGMSFIHFIQGA 85 (212)
T ss_dssp HHHHHHHHHTCTTCSEEEEESCGGGCHHHHHHHHHHHHTCE
T ss_pred HHHHHHHHhcCCcccEEEEECCCCCCHHHHHHHHHHHhCCC
Confidence 455556665532 2357889999999999998888776554
No 205
>3lda_A DNA repair protein RAD51; DNA binding protein, ATP-binding, DNA damage, DNA recombinat repair, nucleotide-binding; HET: DNA; 2.50A {Saccharomyces cerevisiae} PDB: 1szp_A*
Probab=89.56 E-value=1.6 Score=43.80 Aligned_cols=46 Identities=22% Similarity=0.338 Sum_probs=31.5
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcCh
Q 010367 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (512)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (512)
.+..++.++ ...-..|.+|.|+|||..+..++... ..+++++....
T Consensus 166 ~LD~lLgGGI~~Gei~~I~G~sGsGKTTLl~~la~~~~~p~~~Gg~~~~viyid~E~ 222 (400)
T 3lda_A 166 NLDTLLGGGVETGSITELFGEFRTGKSQLCHTLAVTCQIPLDIGGGEGKCLYIDTEG 222 (400)
T ss_dssp HHHHHTTTSEETTSEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSSEEEEEESSS
T ss_pred hHHHHhcCCcCCCcEEEEEcCCCCChHHHHHHHHHHhccCcccCCCCCcEEEEeCCC
Confidence 466666543 23467889999999999988665332 24588887654
No 206
>4a74_A DNA repair and recombination protein RADA; hydrolase, recombinase; HET: DNA ANP; 1.48A {Pyrococcus furiosus} PDB: 4a6x_A* 4a6p_A* 4a7o_A*
Probab=89.03 E-value=0.65 Score=42.07 Aligned_cols=47 Identities=26% Similarity=0.381 Sum_probs=31.4
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------CCCEEEEEcCh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------KKSCLCLATNA 78 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------~~~~Lvl~P~~ 78 (512)
..++.++.++ ...-..|.+|.|+|||.....++... ...++++....
T Consensus 12 ~~LD~~l~ggi~~G~~~~l~G~nGsGKSTll~~l~g~~~~~~~~g~~~~~~i~~~~~~ 69 (231)
T 4a74_A 12 KSLDKLLGGGIETQAITEVFGEFGSGKTQLAHTLAVMVQLPPEEGGLNGSVIWIDTEN 69 (231)
T ss_dssp HHHHHHTTSSEESSEEEEEEESTTSSHHHHHHHHHHHTTSCGGGTCCSCEEEEEESSS
T ss_pred hhHHhHhcCCCCCCcEEEEECCCCCCHHHHHHHHHHHHhcccccCCCCCEEEEEECCC
Confidence 4566666543 22467888999999999887777532 33477776544
No 207
>3te6_A Regulatory protein SIR3; heterochromatin, gene silencing, SIR complex, HMR, HML, TELO AAA+ domain, structural, nucleus, gene RE; 2.80A {Saccharomyces cerevisiae}
Probab=88.76 E-value=0.31 Score=47.30 Aligned_cols=41 Identities=5% Similarity=-0.165 Sum_probs=29.3
Q ss_pred cHHHHHHHHH----HHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSK----MFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~----~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|+-|.+.+.. .+..+.+.+.+|.+|+|+|||.++-.++..+
T Consensus 25 Re~E~~~i~~~L~~~i~~~~~~~lli~GpPGTGKT~~v~~v~~~L 69 (318)
T 3te6_A 25 QVEDFTRIFLPIYDSLMSSQNKLFYITNADDSTKFQLVNDVMDEL 69 (318)
T ss_dssp HHHHHHHHHHHHHHHHHTTCCCEEEEECCCSHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCCHHHHHHHHHHHH
Confidence 3345544443 2445556788999999999999998888766
No 208
>1lv7_A FTSH; alpha/beta domain, four helix bundle, hydrolase; 1.50A {Escherichia coli} SCOP: c.37.1.20
Probab=88.59 E-value=0.39 Score=44.80 Aligned_cols=32 Identities=25% Similarity=0.394 Sum_probs=25.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
.++.+|.+|+|+|||..+-+++...+.+++.+
T Consensus 45 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~i 76 (257)
T 1lv7_A 45 PKGVLMVGPPGTGKTLLAKAIAGEAKVPFFTI 76 (257)
T ss_dssp CCEEEEECCTTSCHHHHHHHHHHHHTCCEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCCEEEE
Confidence 35789999999999999988887776665544
No 209
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=88.33 E-value=0.36 Score=53.23 Aligned_cols=33 Identities=21% Similarity=0.295 Sum_probs=25.8
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.++.+|++|+|+|||.++-+++..++.+++.+.
T Consensus 238 ~~~vLL~Gp~GtGKTtLarala~~l~~~~i~v~ 270 (806)
T 1ypw_A 238 PRGILLYGPPGTGKTLIARAVANETGAFFFLIN 270 (806)
T ss_dssp CCEEEECSCTTSSHHHHHHHHHHTTTCEEEEEE
T ss_pred CCeEEEECcCCCCHHHHHHHHHHHcCCcEEEEE
Confidence 457899999999999998888877766554443
No 210
>1vma_A Cell division protein FTSY; TM0570, structural genomics, JCS protein structure initiative, PSI, joint center for structu genomics; HET: CIT; 1.60A {Thermotoga maritima} SCOP: a.24.13.1 c.37.1.10
Probab=88.26 E-value=3.6 Score=39.47 Aligned_cols=31 Identities=26% Similarity=0.110 Sum_probs=23.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
-..+++|+|+|||.++..++..+ +++++++.
T Consensus 106 vi~ivG~~GsGKTTl~~~LA~~l~~~g~kV~lv~ 139 (306)
T 1vma_A 106 VIMVVGVNGTGKTTSCGKLAKMFVDEGKSVVLAA 139 (306)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEcCCCChHHHHHHHHHHHHHhcCCEEEEEc
Confidence 45688999999999877666443 45676665
No 211
>2xxa_A Signal recognition particle protein; protein transport, RNA/RNA binding protein, hydrolase, gtpas; HET: GCP; 3.94A {Escherichia coli} PDB: 2j28_9
Probab=88.08 E-value=7.5 Score=39.21 Aligned_cols=32 Identities=22% Similarity=0.080 Sum_probs=24.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---c-CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---I-KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~-~~~~Lvl~ 75 (512)
+..+++++.|+|||.++..++.. . +++++++.
T Consensus 101 ~vI~ivG~~GvGKTT~a~~LA~~l~~~~G~kVllvd 136 (433)
T 2xxa_A 101 AVVLMAGLQGAGKTTSVGKLGKFLREKHKKKVLVVS 136 (433)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTSCCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHhcCCeEEEEe
Confidence 45667799999999998777743 3 66788777
No 212
>3hws_A ATP-dependent CLP protease ATP-binding subunit CL; CLPXP, AAA+ molecular machine, hexamer, asymmetric,, ATP-BIN chaperone, metal-binding; HET: ADP; 3.25A {Escherichia coli} PDB: 3hte_A
Probab=88.08 E-value=0.46 Score=46.92 Aligned_cols=33 Identities=18% Similarity=0.278 Sum_probs=28.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.+.++.+|+|+|||.++-.++..++.+++.+-.
T Consensus 52 ~~vll~GppGtGKT~la~~ia~~~~~~~~~~~~ 84 (363)
T 3hws_A 52 SNILLIGPTGSGKTLLAETLARLLDVPFTMADA 84 (363)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEH
T ss_pred CeEEEECCCCCCHHHHHHHHHHHcCCCEEEech
Confidence 578999999999999999999988888776654
No 213
>3a8t_A Adenylate isopentenyltransferase; rossmann fold protein; HET: ATP; 2.37A {Humulus lupulus}
Probab=88.01 E-value=0.24 Score=48.34 Aligned_cols=25 Identities=20% Similarity=0.329 Sum_probs=22.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.+|++|||+|||.+++.++..++
T Consensus 41 ~lIvI~GPTgsGKTtLa~~LA~~l~ 65 (339)
T 3a8t_A 41 KLLVLMGATGTGKSRLSIDLAAHFP 65 (339)
T ss_dssp EEEEEECSTTSSHHHHHHHHHTTSC
T ss_pred ceEEEECCCCCCHHHHHHHHHHHCC
Confidence 3578999999999999999998875
No 214
>3trf_A Shikimate kinase, SK; amino acid biosynthesis, transferase; 2.60A {Coxiella burnetii}
Probab=87.72 E-value=0.44 Score=41.76 Aligned_cols=28 Identities=29% Similarity=0.233 Sum_probs=23.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
+..++.+++|+|||.++-.++..++.++
T Consensus 6 ~~i~l~G~~GsGKst~a~~La~~l~~~~ 33 (185)
T 3trf_A 6 TNIYLIGLMGAGKTSVGSQLAKLTKRIL 33 (185)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHHHCCCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 3688999999999999999998876543
No 215
>2zts_A Putative uncharacterized protein PH0186; KAIC like protein, ATP-binding, nucleotide-binding, ATP- binding protein; HET: ADP; 2.07A {Pyrococcus horikoshii}
Probab=87.54 E-value=0.59 Score=42.98 Aligned_cols=56 Identities=7% Similarity=0.149 Sum_probs=37.7
Q ss_pred HHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEEcChhhHHHHHHHHHH
Q 010367 34 LSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 34 l~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
|+.++.+| +..-.+|++++|+|||..++.++.. .+++++++...-. ..+..+.+..
T Consensus 19 LD~~l~GGl~~G~l~~i~G~pG~GKT~l~l~~~~~~~~~~~~~v~~~s~E~~-~~~~~~~~~~ 80 (251)
T 2zts_A 19 FDELIEGGFPEGTTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEER-ARDLRREMAS 80 (251)
T ss_dssp TGGGTTTSEETTCEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSSC-HHHHHHHHHT
T ss_pred HHHhhcCCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHhcCCCceeecccCC-HHHHHHHHHH
Confidence 44455543 2346789999999999998776643 3568888876543 6666666554
No 216
>2r44_A Uncharacterized protein; putative ATPase, structural genomics, joint center for struc genomics, JCSG; HET: MSE PG4; 2.00A {Cytophaga hutchinsonii atcc 33406}
Probab=87.27 E-value=0.75 Score=44.57 Aligned_cols=46 Identities=15% Similarity=0.018 Sum_probs=32.7
Q ss_pred HHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 28 PYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 28 ~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
+...+.+...+..+ ++.++.+|+|+|||..+-.++..++.++..+.
T Consensus 33 ~~~~~~l~~~l~~~--~~vll~G~pGtGKT~la~~la~~~~~~~~~i~ 78 (331)
T 2r44_A 33 KYMINRLLIGICTG--GHILLEGVPGLAKTLSVNTLAKTMDLDFHRIQ 78 (331)
T ss_dssp HHHHHHHHHHHHHT--CCEEEESCCCHHHHHHHHHHHHHTTCCEEEEE
T ss_pred HHHHHHHHHHHHcC--CeEEEECCCCCcHHHHHHHHHHHhCCCeEEEe
Confidence 33344444334333 38999999999999999988888887766554
No 217
>1qhx_A CPT, protein (chloramphenicol phosphotransferase); kinase, antibiotic resistance, phosphorylation, mononucleoti binding fold; HET: ATP; 2.50A {Streptomyces venezuelae} SCOP: c.37.1.3 PDB: 1grr_A* 1grq_A 1qhs_A* 1qhn_A* 1qhy_A*
Probab=87.25 E-value=0.61 Score=40.47 Aligned_cols=30 Identities=20% Similarity=0.081 Sum_probs=25.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
-.++.+++|+|||.++-.++..++.+++.+
T Consensus 5 ~i~l~G~~GsGKST~a~~La~~l~~~~~~~ 34 (178)
T 1qhx_A 5 MIILNGGSSAGKSGIVRCLQSVLPEPWLAF 34 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHSSSCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCeEEe
Confidence 578899999999999999999887666544
No 218
>1ls1_A Signal recognition particle protein; FFH, SRP54, SRP, GTPase, ultrahigh resolution, protein transport; 1.10A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 1jpn_B* 1jpj_A* 1ry1_U* 2j45_A* 1o87_A* 2c04_A* 2j46_A* 1rj9_B* 2c03_A* 2j7p_A* 1okk_A* 2cnw_A* 1ng1_A* 2xkv_A 3ng1_A 1ffh_A 2ng1_A*
Probab=86.71 E-value=3.5 Score=39.29 Aligned_cols=31 Identities=23% Similarity=0.122 Sum_probs=22.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
...++++.|+|||.++..++.. .+++++++-
T Consensus 100 ~i~i~g~~G~GKTT~~~~la~~~~~~~~~v~l~~ 133 (295)
T 1ls1_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (295)
T ss_dssp EEEEECCTTTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEec
Confidence 4567799999999987766643 356777776
No 219
>2qgz_A Helicase loader, putative primosome component; structural genomics, PSI-2, protein structure initiative; 2.40A {Streptococcus pyogenes serotype M3}
Probab=86.45 E-value=0.48 Score=45.77 Aligned_cols=33 Identities=21% Similarity=0.131 Sum_probs=24.7
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~ 75 (512)
..+.+|.+|+|+|||..+.+++..+ +.+++++.
T Consensus 152 ~~~lll~G~~GtGKT~La~aia~~~~~~~g~~v~~~~ 188 (308)
T 2qgz_A 152 QKGLYLYGDMGIGKSYLLAAMAHELSEKKGVSTTLLH 188 (308)
T ss_dssp CCEEEEECSTTSSHHHHHHHHHHHHHHHSCCCEEEEE
T ss_pred CceEEEECCCCCCHHHHHHHHHHHHHHhcCCcEEEEE
Confidence 3588999999999999987776433 35666554
No 220
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=86.32 E-value=1.6 Score=51.58 Aligned_cols=100 Identities=17% Similarity=0.176 Sum_probs=64.3
Q ss_pred HHHHHHHhC-C--CCcceEEEcCCCCcHHHHHHHHH---HhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010367 32 KSLSKMFGN-G--RARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (512)
Q Consensus 32 ~al~~~~~~-~--~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~ 105 (512)
.+|..++.. + +.+...|.+|.|+|||..++.++ +..++.++++.+--+|-..+ .+++ |++..+
T Consensus 1417 ~~lD~~lg~gG~prg~~iei~g~~~sGkttl~~~~~a~~~~~g~~~~~i~~e~~~~~~~---~~~~-Gv~~~~------- 1485 (1706)
T 3cmw_A 1417 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHALDPIY---ARKL-GVDIDN------- 1485 (1706)
T ss_dssp HHHHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSCCCHHH---HHHT-TCCGGG-------
T ss_pred HHHHHhcCCCCCCCCCEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEEecCCCCCHHH---HHHc-CCCHHH-------
Confidence 456666764 3 33457888999999999988777 44578999999987766655 4444 555433
Q ss_pred ccccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
++++-|+.--.. .+.....++....++||||.+-.+.
T Consensus 1486 ----------l~~~~p~~~e~~------l~~~~~~~~s~~~~~vvvDsv~al~ 1522 (1706)
T 3cmw_A 1486 ----------LLCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALT 1522 (1706)
T ss_dssp ----------CEEECCSSHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ----------eEEeCCCcHHHH------HHHHHHHHHcCCCCEEEEccHHhCC
Confidence 344444322111 1222334455788999999987765
No 221
>2r62_A Cell division protease FTSH homolog; ATPase domain, ATP-binding, cell CELL division, hydrolase, membrane, metal-binding; 3.30A {Helicobacter pylori} PDB: 2r65_A*
Probab=86.04 E-value=0.53 Score=44.05 Aligned_cols=31 Identities=23% Similarity=0.368 Sum_probs=24.9
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lv 73 (512)
.++.+|.+|+|+|||.++-.++.....+++.
T Consensus 44 ~~~vll~G~~GtGKT~la~~la~~~~~~~~~ 74 (268)
T 2r62_A 44 PKGVLLVGPPGTGKTLLAKAVAGEAHVPFFS 74 (268)
T ss_dssp CSCCCCBCSSCSSHHHHHHHHHHHHTCCCCC
T ss_pred CceEEEECCCCCcHHHHHHHHHHHhCCCEEE
Confidence 3468899999999999998888877655443
No 222
>3foz_A TRNA delta(2)-isopentenylpyrophosphate transferas; nucleoside modification, isopentenyl-tRNA transferase, transferase-RNA complex; 2.50A {Escherichia coli k-12} PDB: 2zxu_A* 2zm5_A
Probab=85.52 E-value=0.58 Score=45.04 Aligned_cols=25 Identities=12% Similarity=0.267 Sum_probs=21.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.+|++|||+|||..+..++...+
T Consensus 11 ~~i~i~GptgsGKt~la~~La~~~~ 35 (316)
T 3foz_A 11 KAIFLMGPTASGKTALAIELRKILP 35 (316)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHSC
T ss_pred cEEEEECCCccCHHHHHHHHHHhCC
Confidence 3567899999999999999998875
No 223
>3pxg_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 3.65A {Bacillus subtilis}
Probab=85.20 E-value=0.86 Score=46.76 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=30.7
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
++...+.+..++......+.+|.+|+|+|||.++-.++..+
T Consensus 185 r~~~i~~l~~~l~r~~~~~~LL~G~pG~GKT~la~~la~~l 225 (468)
T 3pxg_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (468)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHhccCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45555555556655555688999999999999988887765
No 224
>2ze6_A Isopentenyl transferase; crown GALL tumor, cytokinin biosynthesis; HET: DST AMP; 2.10A {Agrobacterium tumefaciens} PDB: 2ze5_A* 2ze7_A* 2ze8_A
Probab=85.00 E-value=0.65 Score=43.35 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=21.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
-.+|++|+|+|||..+..++..++..
T Consensus 3 li~I~G~~GSGKSTla~~La~~~~~~ 28 (253)
T 2ze6_A 3 LHLIYGPTCSGKTDMAIQIAQETGWP 28 (253)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCcCHHHHHHHHHhcCCCe
Confidence 35789999999999999998877643
No 225
>2c9o_A RUVB-like 1; hexameric helicase, AAA+-ATPase, ATP-binding, chromatin regulator, growth regulation, hydrolase, nuclear protein, DNA recombination; HET: ADP; 2.2A {Homo sapiens} PDB: 2xsz_A*
Probab=84.91 E-value=0.74 Score=47.05 Aligned_cols=34 Identities=18% Similarity=0.273 Sum_probs=27.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P 76 (512)
.++.++.+|+|+|||..+-+++..++ .+++.+..
T Consensus 63 ~~~iLl~GppGtGKT~la~ala~~l~~~~~~~~~~~ 98 (456)
T 2c9o_A 63 GRAVLLAGPPGTGKTALALAIAQELGSKVPFCPMVG 98 (456)
T ss_dssp TCEEEEECCTTSSHHHHHHHHHHHHCTTSCEEEEEG
T ss_pred CCeEEEECCCcCCHHHHHHHHHHHhCCCceEEEEeH
Confidence 35899999999999999999998887 45555543
No 226
>3vaa_A Shikimate kinase, SK; structural genomics, center for structural genomics of infec diseases, csgid, metal binding, transferase; 1.70A {Bacteroides thetaiotaomicron}
Probab=84.47 E-value=0.83 Score=40.69 Aligned_cols=28 Identities=21% Similarity=0.211 Sum_probs=23.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
...+|.+++|+|||.++-.++..++.++
T Consensus 26 ~~i~l~G~~GsGKsTl~~~La~~l~~~~ 53 (199)
T 3vaa_A 26 VRIFLTGYMGAGKTTLGKAFARKLNVPF 53 (199)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHTCCE
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHcCCCE
Confidence 4788999999999999999988876554
No 227
>3exa_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2, protein structure initiative; 2.30A {Bacillus halodurans} PDB: 2qgn_A
Probab=84.44 E-value=0.56 Score=45.23 Aligned_cols=32 Identities=25% Similarity=0.253 Sum_probs=24.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA 78 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~ 78 (512)
-.+|++|||+|||.++..++..++ ..||..-+
T Consensus 5 ~i~i~GptgsGKt~la~~La~~~~--~~iis~Ds 36 (322)
T 3exa_A 5 LVAIVGPTAVGKTKTSVMLAKRLN--GEVISGDS 36 (322)
T ss_dssp EEEEECCTTSCHHHHHHHHHHTTT--EEEEECCG
T ss_pred EEEEECCCcCCHHHHHHHHHHhCc--cceeecCc
Confidence 467899999999999999988774 34444433
No 228
>1c9k_A COBU, adenosylcobinamide kinase; alpha/beta structure rossmann fold P-loop, transferase; HET: 5GP; 2.20A {Salmonella typhimurium} SCOP: c.37.1.11 PDB: 1cbu_A
Probab=84.19 E-value=0.81 Score=40.34 Aligned_cols=45 Identities=18% Similarity=0.115 Sum_probs=32.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
.+|.+++|||||.-+..++.. +.+++++++....-..|.+.+..+
T Consensus 2 ilV~Gg~~SGKS~~A~~la~~-~~~~~yiaT~~~~d~e~~~rI~~h 46 (180)
T 1c9k_A 2 ILVTGGARSGKSRHAEALIGD-APQVLYIATSQILDDEMAARIQHH 46 (180)
T ss_dssp EEEEECTTSSHHHHHHHHHCS-CSSEEEEECCCC------CHHHHH
T ss_pred EEEECCCCCcHHHHHHHHHhc-CCCeEEEecCCCCCHHHHHHHHHH
Confidence 478899999999999988877 778999998765555566666554
No 229
>3cmw_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 2.80A {Escherichia coli} PDB: 3cmt_A* 3cmx_A* 3cmv_A*
Probab=84.15 E-value=2.3 Score=50.37 Aligned_cols=98 Identities=16% Similarity=0.184 Sum_probs=55.5
Q ss_pred HHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcc
Q 010367 34 LSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSK 107 (512)
Q Consensus 34 l~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~ 107 (512)
|+.++. ++ +....+|.+|+|+|||..++.++... +.+++++.-.-. ..|.. .+.++++..++
T Consensus 720 LD~lLg~GGl~~G~lVlI~G~PG~GKTtLal~lA~~aa~~g~~VlyiS~Ees-~~ql~---A~~lGvd~~~L-------- 787 (1706)
T 3cmw_A 720 LDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY---ARKLGVDIDNL-------- 787 (1706)
T ss_dssp HHHHTSSSSEETTSEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEECTTSC-CCHHH---HHHTTCCGGGC--------
T ss_pred HHHHhccCCcCCCceEEEECCCCCCcHHHHHHHHHHHHHcCCCeEEEeccch-HHHHH---HHHcCCChhhe--------
Confidence 445554 22 34567889999999999988877543 457888875443 44432 33334443222
Q ss_pred ccccCCCeEEEEchhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCC
Q 010367 108 ERFRGNAGVVVTTYNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 108 ~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~ 158 (512)
.+.....+... ............+++||||+...+.
T Consensus 788 ---------~i~~~~~leei------~~~l~~lv~~~~~~lVVIDsLq~l~ 823 (1706)
T 3cmw_A 788 ---------LCSQPDTGEQA------LEICDALARSGAVDVIVVDSVAALT 823 (1706)
T ss_dssp ---------EEECCSSHHHH------HHHHHHHHHHTCCSEEEESCSTTCC
T ss_pred ---------EEecCCcHHHH------HHHHHHHHHccCCCEEEEechhhhc
Confidence 22222222111 0111112223678999999999886
No 230
>1g41_A Heat shock protein HSLU; AAA-ATPase, CLPY, ATP-dependent proteolysis, chaperone; HET: ADP; 2.30A {Haemophilus influenzae} SCOP: c.37.1.20 PDB: 1g3i_A* 1im2_A* 1kyi_A* 1g4a_E* 1g4b_E 1yyf_A* 1do0_A* 1do2_A* 1e94_E* 1hqy_E* 1ht1_E* 1ht2_E*
Probab=83.63 E-value=1 Score=45.64 Aligned_cols=34 Identities=15% Similarity=0.246 Sum_probs=29.1
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
.++.++.+|+|+|||.++-.++..++.+++.+-.
T Consensus 50 ~~~iLl~GppGtGKT~lar~lA~~l~~~~~~v~~ 83 (444)
T 1g41_A 50 PKNILMIGPTGVGKTEIARRLAKLANAPFIKVEA 83 (444)
T ss_dssp CCCEEEECCTTSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred CceEEEEcCCCCCHHHHHHHHHHHcCCCceeecc
Confidence 3578999999999999999999998887776654
No 231
>3crm_A TRNA delta(2)-isopentenylpyrophosphate transferase; ATP-binding, nucleotide-binding, nucleotidyltransferase, tRNA processing; 1.90A {Pseudomonas aeruginosa} PDB: 3crq_A 3crr_A
Probab=83.40 E-value=0.69 Score=44.84 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=21.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+|++|||+|||.++..++..++
T Consensus 7 ~i~i~GptGsGKTtla~~La~~l~ 30 (323)
T 3crm_A 7 AIFLMGPTAAGKTDLAMALADALP 30 (323)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHSC
T ss_pred EEEEECCCCCCHHHHHHHHHHHcC
Confidence 578999999999999999998876
No 232
>1ixz_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 2.20A {Thermus thermophilus} SCOP: c.37.1.20 PDB: 1iy0_A* 1iy1_A*
Probab=83.28 E-value=1.1 Score=41.39 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
++.+|.+|+|+|||..+-+++.....+.+.+.
T Consensus 50 ~g~ll~G~~G~GKTtl~~~i~~~~~~~~i~~~ 81 (254)
T 1ixz_A 50 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 81 (254)
T ss_dssp SEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCCCCHHHHHHHHHHHhCCCEEEee
Confidence 35789999999999998888877776655554
No 233
>2ffh_A Protein (FFH); SRP54, signal recognition particle, GTPase, M domain, RNA-binding, signal sequence-binding, helix-turn-helix, protein targeting; 3.20A {Thermus aquaticus} SCOP: a.24.13.1 a.36.1.1 c.37.1.10 PDB: 2iy3_A
Probab=82.85 E-value=7 Score=39.34 Aligned_cols=31 Identities=23% Similarity=0.137 Sum_probs=23.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
...++++.|+|||.++..++..+ +++++++.
T Consensus 100 vi~i~G~~GsGKTT~~~~LA~~l~~~g~~Vllvd 133 (425)
T 2ffh_A 100 LWFLVGLQGSGKTTTAAKLALYYKGKGRRPLLVA 133 (425)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEee
Confidence 45677999999999887777543 46777776
No 234
>2i1q_A DNA repair and recombination protein RADA; ATPase, recombinase, ATP complex, calcium stimulation, RECA, DMC1; HET: DNA ANP; 1.90A {Methanococcus voltae} SCOP: a.60.4.1 c.37.1.11 PDB: 1xu4_A* 2b21_A* 2fpk_A* 2fpl_A* 2fpm_A* 1t4g_A* 3fyh_A* 2f1j_A* 2f1i_A* 2f1h_A* 3ntu_A* 3ewa_A* 3ew9_A* 3etl_A* 4dc9_A* 2gdj_A*
Probab=82.55 E-value=2.3 Score=40.98 Aligned_cols=59 Identities=12% Similarity=0.159 Sum_probs=39.1
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---------------C----CCEEEEEcChhh-HHHHHHHHH
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---------------K----KSCLCLATNAVS-VDQWAFQFK 89 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---------------~----~~~Lvl~P~~~L-~~Qw~~~~~ 89 (512)
..++.++.++ ...-.+|.+|+|+|||..++.++... + ++++++.....+ ..+..+.+.
T Consensus 85 ~~LD~~l~GGl~~g~i~~i~G~~gsGKT~la~~la~~~~l~~~~~~~~~~~~~gg~~~~~v~yi~~e~~~~~~~l~~~~~ 164 (322)
T 2i1q_A 85 SELDSVLGGGLESQSVTEFAGVFGSGKTQIMHQSCVNLQNPEFLFYDEEAVSKGEVAQPKAVYIDTEGTFRPERIMQMAE 164 (322)
T ss_dssp HHHHHHTTSSEETTEEEEEEESTTSSHHHHHHHHHHHTTCGGGEECCTTTSCTTTTSSEEEEEEESSSCCCHHHHHHHHH
T ss_pred hhHHHhcCCCccCCeEEEEECCCCCCHHHHHHHHHHHHhccccccccccccccCCCCCceEEEEECCCCCCHHHHHHHHH
Confidence 4566677543 33457889999999999998888652 2 578888865432 344444444
Q ss_pred H
Q 010367 90 L 90 (512)
Q Consensus 90 ~ 90 (512)
.
T Consensus 165 ~ 165 (322)
T 2i1q_A 165 H 165 (322)
T ss_dssp H
T ss_pred H
Confidence 4
No 235
>3kb2_A SPBC2 prophage-derived uncharacterized protein YORR; alpha-beta protein., structural genomics, PSI-2, protein structure initiative; HET: G3D; 2.20A {Bacillus subtilis} SCOP: c.37.1.1 PDB: 2axp_A*
Probab=82.48 E-value=1 Score=38.59 Aligned_cols=26 Identities=23% Similarity=0.023 Sum_probs=21.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++.+
T Consensus 3 ~i~l~G~~GsGKsT~~~~L~~~l~~~ 28 (173)
T 3kb2_A 3 LIILEGPDCCFKSTVAAKLSKELKYP 28 (173)
T ss_dssp EEEEECSSSSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 46789999999999998888877644
No 236
>2x8a_A Nuclear valosin-containing protein-like; nuclear protein; 2.60A {Homo sapiens}
Probab=82.25 E-value=1.7 Score=41.05 Aligned_cols=32 Identities=19% Similarity=0.282 Sum_probs=24.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
++.+|.+|.|+|||..+-+++...+...+.+.
T Consensus 45 ~GvlL~Gp~GtGKTtLakala~~~~~~~i~i~ 76 (274)
T 2x8a_A 45 AGVLLAGPPGCGKTLLAKAVANESGLNFISVK 76 (274)
T ss_dssp SEEEEESSTTSCHHHHHHHHHHHTTCEEEEEE
T ss_pred CeEEEECCCCCcHHHHHHHHHHHcCCCEEEEE
Confidence 45889999999999998888777665444443
No 237
>1gm5_A RECG; helicase, replication restart; HET: DNA ADP; 3.24A {Thermotoga maritima} SCOP: a.24.21.1 b.40.4.9 c.37.1.19 c.37.1.19
Probab=82.20 E-value=3.6 Score=44.98 Aligned_cols=76 Identities=12% Similarity=0.207 Sum_probs=59.9
Q ss_pred CCCeEEEEecCHHHHHHHHHHh---------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC-CCcccccCccccEE
Q 010367 267 RGDKIIVFADNLFALTEYAMKL---------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-VGDNSIDIPEANVI 336 (512)
Q Consensus 267 ~g~k~iVf~~~~~~~~~l~~~L---------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~-~~~~GlDlp~~~~v 336 (512)
.|.+++|.++++.-+...++.+ .+..++|+++..+|.++++.+..+ ..+|+|+|. .+...+++.++++|
T Consensus 416 ~g~qvlvlaPtr~La~Q~~~~l~~~~~~~gi~v~~l~G~~~~~~r~~~~~~l~~g-~~~IvVgT~~ll~~~~~~~~l~lV 494 (780)
T 1gm5_A 416 AGFQTAFMVPTSILAIQHYRRTVESFSKFNIHVALLIGATTPSEKEKIKSGLRNG-QIDVVIGTHALIQEDVHFKNLGLV 494 (780)
T ss_dssp HTSCEEEECSCHHHHHHHHHHHHHHHTCSSCCEEECCSSSCHHHHHHHHHHHHSS-CCCEEEECTTHHHHCCCCSCCCEE
T ss_pred cCCeEEEEeCcHHHHHHHHHHHHHHhhhcCceEEEEeCCCCHHHHHHHHHHHhcC-CCCEEEECHHHHhhhhhccCCceE
Confidence 4679999999998776665544 234689999999999999999997 899999984 44566788888988
Q ss_pred EEecCCC
Q 010367 337 IQISSHA 343 (512)
Q Consensus 337 I~~~~~~ 343 (512)
|+-..|.
T Consensus 495 VIDEaHr 501 (780)
T 1gm5_A 495 IIDEQHR 501 (780)
T ss_dssp EEESCCC
T ss_pred Eecccch
Confidence 8865543
No 238
>1p9r_A General secretion pathway protein E; bacterial type II secretion system cytoplasmic protein - GSPE, putative ATPase/ ATP binding protein; 2.50A {Vibrio cholerae} SCOP: c.37.1.11 PDB: 1p9w_A*
Probab=81.96 E-value=2.4 Score=42.66 Aligned_cols=42 Identities=12% Similarity=0.146 Sum_probs=29.5
Q ss_pred CCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 25 QPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 25 ~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.+.+...+..++.. ...-.+|.+|||+|||.+.-+++..+
T Consensus 150 g~~~~~~~~L~~l~~~-~ggii~I~GpnGSGKTTlL~allg~l 191 (418)
T 1p9r_A 150 GMTAHNHDNFRRLIKR-PHGIILVTGPTGSGKSTTLYAGLQEL 191 (418)
T ss_dssp CCCHHHHHHHHHHHTS-SSEEEEEECSTTSCHHHHHHHHHHHH
T ss_pred CCCHHHHHHHHHHHHh-cCCeEEEECCCCCCHHHHHHHHHhhc
Confidence 3456677788887643 22346788999999998876666554
No 239
>3iij_A Coilin-interacting nuclear ATPase protein; alpha and beta proteins (A/B), protein binding, transferase, phosphotransferase; HET: ADP; 1.76A {Homo sapiens} SCOP: c.37.1.1 PDB: 3iik_A 3iil_A* 3iim_A* 1rkb_A
Probab=81.82 E-value=1.1 Score=38.88 Aligned_cols=28 Identities=18% Similarity=0.191 Sum_probs=23.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
...++.+++|+|||.++-.++..++.++
T Consensus 12 ~~i~i~G~~GsGKst~~~~l~~~~~~~~ 39 (180)
T 3iij_A 12 PNILLTGTPGVGKTTLGKELASKSGLKY 39 (180)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHHCCEE
T ss_pred CeEEEEeCCCCCHHHHHHHHHHHhCCeE
Confidence 4688999999999999998888776443
No 240
>1j8m_F SRP54, signal recognition 54 kDa protein; signaling protein; 2.00A {Acidianus ambivalens} SCOP: a.24.13.1 c.37.1.10 PDB: 1j8y_F
Probab=81.52 E-value=5.5 Score=37.95 Aligned_cols=32 Identities=16% Similarity=-0.012 Sum_probs=23.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (512)
-.+++++.|+|||.++..++..+ +++++++.-
T Consensus 100 vi~i~G~~G~GKTT~~~~la~~~~~~g~~v~l~~~ 134 (297)
T 1j8m_F 100 VIMLVGVQGTGKTTTAGKLAYFYKKKGFKVGLVGA 134 (297)
T ss_dssp EEEEECSSCSSTTHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEec
Confidence 45677999999999877666443 567777763
No 241
>3lw7_A Adenylate kinase related protein (ADKA-like); AMP, PSI, MCSG, structural genomics, midwest center for structural genomics; HET: AMP; 2.30A {Sulfolobus solfataricus} PDB: 3h0k_A
Probab=81.48 E-value=1.1 Score=38.34 Aligned_cols=26 Identities=19% Similarity=-0.027 Sum_probs=20.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
-.+|.+++|+|||.++-.+ ...+.++
T Consensus 3 ~I~l~G~~GsGKsT~a~~L-~~~g~~~ 28 (179)
T 3lw7_A 3 VILITGMPGSGKSEFAKLL-KERGAKV 28 (179)
T ss_dssp EEEEECCTTSCHHHHHHHH-HHTTCEE
T ss_pred EEEEECCCCCCHHHHHHHH-HHCCCcE
Confidence 4578999999999998888 6665553
No 242
>2w0m_A SSO2452; RECA, SSPF, unknown FUN; 2.0A {Sulfolobus solfataricus P2}
Probab=81.42 E-value=2.9 Score=37.58 Aligned_cols=56 Identities=18% Similarity=0.242 Sum_probs=35.0
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHHH
Q 010367 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
+++.++.++ ...-.+|.+|+|+|||..+..++.. .+++++++..... ..+....+.
T Consensus 11 ~Ld~~~~ggi~~G~~~~i~G~~GsGKTtl~~~l~~~~~~~~~~v~~~~~~~~-~~~~~~~~~ 71 (235)
T 2w0m_A 11 DFDKLIQGGIPQGFFIALTGEPGTGKTIFSLHFIAKGLRDGDPCIYVTTEES-RDSIIRQAK 71 (235)
T ss_dssp HHHGGGTTSEETTCEEEEECSTTSSHHHHHHHHHHHHHHHTCCEEEEESSSC-HHHHHHHHH
T ss_pred HHHHHhcCCCcCCCEEEEEcCCCCCHHHHHHHHHHHHHHCCCeEEEEEcccC-HHHHHHHHH
Confidence 455555422 2246788999999999887766643 3568888775432 444444444
No 243
>3cmu_A Protein RECA, recombinase A; homologous recombination, recombination/DNA complex; HET: DNA ADP; 4.20A {Escherichia coli}
Probab=81.26 E-value=4.3 Score=48.78 Aligned_cols=99 Identities=17% Similarity=0.216 Sum_probs=58.5
Q ss_pred HHHHHHHh-CC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCC
Q 010367 32 KSLSKMFG-NG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSD 105 (512)
Q Consensus 32 ~al~~~~~-~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~ 105 (512)
..|..++. ++ +..-.+|.+|+|+|||..++.++... +.+|+++.---. ..|.. .+.++++..++
T Consensus 369 ~~LD~lLG~GGl~~G~lilI~G~pGsGKTtLaLqia~~~a~~G~~vlyis~E~s-~~~~~---a~~lGvd~~~L------ 438 (2050)
T 3cmu_A 369 LSLDIALGAGGLPMGRIVEIYGPESSGKTTLTLQVIAAAQREGKTCAFIDAEHA-LDPIY---ARKLGVDIDNL------ 438 (2050)
T ss_dssp HHHHHHHSSSSEETTSEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEECTTSC-CCHHH---HHHTTCCTTTC------
T ss_pred HHHHHHhccCCccCCcEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEEEcCCC-HHHHH---HHHcCCCHHHe------
Confidence 45777776 33 33567889999999999998887654 468888875554 33332 23335543332
Q ss_pred ccccccCCCeEEEEchhhhhccCCCchhHHHHHH-HHhcCCccEEEEcCCCCCC
Q 010367 106 SKERFRGNAGVVVTTYNMVAFGGKRSEESEKIIE-EIRNREWGLLLMDEVHVVP 158 (512)
Q Consensus 106 ~~~~~~~~~~Ivv~T~~~l~~~~~r~~~~~~~~~-~l~~~~~~lvIiDEaH~~~ 158 (512)
.|..+..+.. .....+ .+....+++||||....+.
T Consensus 439 -----------~I~~~~~~e~-------il~~~~~lv~~~~~~lIVIDSL~al~ 474 (2050)
T 3cmu_A 439 -----------LCSQPDTGEQ-------ALEICDALARSGAVDVIVVDSVAALT 474 (2050)
T ss_dssp -----------EEECCSSHHH-------HHHHHHHHHHHTCCSEEEESCGGGCC
T ss_pred -----------EEeCCCCHHH-------HHHHHHHHHHhcCCcEEEECCHHHhh
Confidence 2222221111 111112 2224678999999999876
No 244
>1zuh_A Shikimate kinase; alpha-beta protein, transferase; 1.80A {Helicobacter pylori} PDB: 1zui_A* 3hr7_A 3muf_A* 3mrs_A 3n2e_A*
Probab=81.03 E-value=1.3 Score=38.07 Aligned_cols=29 Identities=21% Similarity=0.240 Sum_probs=24.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (512)
...+|.+++|+|||.++-.++..++-+++
T Consensus 8 ~~i~l~G~~GsGKSTva~~La~~lg~~~i 36 (168)
T 1zuh_A 8 QHLVLIGFMGSGKSSLAQELGLALKLEVL 36 (168)
T ss_dssp CEEEEESCTTSSHHHHHHHHHHHHTCCEE
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEE
Confidence 36789999999999999999888875543
No 245
>3bh0_A DNAB-like replicative helicase; ATPase, replication; 2.35A {Bacillus phage SPP1}
Probab=80.90 E-value=3.8 Score=39.38 Aligned_cols=58 Identities=12% Similarity=0.040 Sum_probs=39.0
Q ss_pred HHHHHHHhCC-CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHHH
Q 010367 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
..+..++.+- +..-.+|++++|+|||..++.++... +.++++++.-- -..|....+..
T Consensus 56 ~~LD~~lgGl~~G~l~li~G~pG~GKTtl~l~ia~~~a~~g~~vl~~slE~-s~~~l~~R~~~ 117 (315)
T 3bh0_A 56 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLIV 117 (315)
T ss_dssp HHHHHHHSSBCTTCEEEEECCTTSSHHHHHHHHHHHHHTTTCEEEEEESSS-CHHHHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEECCC-CHHHHHHHHHH
Confidence 4566666321 23457888999999999888777543 46888888653 36666666554
No 246
>1iy2_A ATP-dependent metalloprotease FTSH; AAA domain fold, hydrolase; 3.20A {Thermus thermophilus} SCOP: c.37.1.20
Probab=80.85 E-value=1.6 Score=41.16 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=25.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
++.+|.+|+|+|||..+-+++.....+.+.+.
T Consensus 74 ~gvll~Gp~GtGKTtl~~~i~~~~~~~~i~~~ 105 (278)
T 1iy2_A 74 KGVLLVGPPGVGKTHLARAVAGEARVPFITAS 105 (278)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHTTCCEEEEE
T ss_pred CeEEEECCCcChHHHHHHHHHHHcCCCEEEec
Confidence 35789999999999998888877776665554
No 247
>2qmh_A HPR kinase/phosphorylase; V267F mutation, ATP-binding, carbohydrate metabolism, magnesium, metal-binding, multifunctional enzyme; 2.60A {Lactobacillus casei} PDB: 1jb1_A 1kkl_A 1kkm_A*
Probab=80.64 E-value=0.89 Score=40.74 Aligned_cols=25 Identities=24% Similarity=0.167 Sum_probs=21.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+..+|.+|||+|||..++.++.+..
T Consensus 35 ~~ilI~GpsGsGKStLA~~La~~g~ 59 (205)
T 2qmh_A 35 LGVLITGDSGVGKSETALELVQRGH 59 (205)
T ss_dssp EEEEEECCCTTTTHHHHHHHHTTTC
T ss_pred EEEEEECCCCCCHHHHHHHHHHhCC
Confidence 4578999999999999999887654
No 248
>3d3q_A TRNA delta(2)-isopentenylpyrophosphate transferase; alpha-beta protein, structural genomics, PSI-2; 2.70A {Staphylococcus epidermidis atcc 12228}
Probab=80.38 E-value=1 Score=43.94 Aligned_cols=24 Identities=25% Similarity=0.368 Sum_probs=21.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
-.+|++|||+|||.++..++..++
T Consensus 9 lI~I~GptgSGKTtla~~La~~l~ 32 (340)
T 3d3q_A 9 LIVIVGPTASGKTELSIEVAKKFN 32 (340)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHTT
T ss_pred eEEEECCCcCcHHHHHHHHHHHcC
Confidence 568899999999999999998876
No 249
>2iyv_A Shikimate kinase, SK; transferase, aromatic amino acid biosynthesis, P-loop kinase, metal- binding, shikimate pathway; HET: ADP; 1.35A {Mycobacterium tuberculosis} SCOP: c.37.1.2 PDB: 2iyr_A* 2iyq_A* 2iyt_A 2iyu_A* 2iys_A* 2iyw_A* 2iyx_A* 2iyy_A* 2iyz_A* 2g1k_A* 1l4y_A* 1u8a_A* 1we2_A* 1zyu_A* 2dfn_A* 2dft_A* 2g1j_A 1l4u_A* 3baf_A*
Probab=80.32 E-value=1.5 Score=38.20 Aligned_cols=26 Identities=27% Similarity=0.312 Sum_probs=22.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++-+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (184)
T 2iyv_A 4 KAVLVGLPGSGKSTIGRRLAKALGVG 29 (184)
T ss_dssp SEEEECSTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEECCCCCCHHHHHHHHHHHcCCC
Confidence 57899999999999999988887754
No 250
>2c95_A Adenylate kinase 1; transferase, AP4A, nucleotide kinase, transferase ATP-bindi; HET: B4P; 1.71A {Homo sapiens} PDB: 1z83_A* 3adk_A
Probab=80.25 E-value=1.8 Score=38.00 Aligned_cols=26 Identities=15% Similarity=0.010 Sum_probs=22.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++.+
T Consensus 11 ~I~l~G~~GsGKsT~~~~La~~l~~~ 36 (196)
T 2c95_A 11 IIFVVGGPGSGKGTQCEKIVQKYGYT 36 (196)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHCCE
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 67899999999999999888877643
No 251
>1via_A Shikimate kinase; structural genomics, transferase; HET: MSE; 1.57A {Campylobacter jejuni} SCOP: c.37.1.2
Probab=79.77 E-value=1.4 Score=38.15 Aligned_cols=25 Identities=20% Similarity=0.183 Sum_probs=21.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
..+|.+++|+|||.++-.++..++-
T Consensus 6 ~i~i~G~~GsGKsTla~~La~~l~~ 30 (175)
T 1via_A 6 NIVFIGFMGSGKSTLARALAKDLDL 30 (175)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHHTC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 5789999999999999988888764
No 252
>3pxi_A Negative regulator of genetic competence CLPC/MEC; CLPB, proteolysis, CLPX, HSP100/CLP, AAA+ proteins, PR binding; 6.93A {Bacillus subtilis}
Probab=79.15 E-value=2.2 Score=46.58 Aligned_cols=41 Identities=15% Similarity=0.254 Sum_probs=31.1
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
++...+.+..++......+.+|.+|+|+|||.++-.++..+
T Consensus 185 ~~~~i~~l~~~l~~~~~~~vLL~G~pGtGKT~la~~la~~l 225 (758)
T 3pxi_A 185 RSKEIQRVIEVLSRRTKNNPVLIGEPGVGKTAIAEGLAQQI 225 (758)
T ss_dssp CHHHHHHHHHHHHCSSSCEEEEESCTTTTTHHHHHHHHHHH
T ss_pred chHHHHHHHHHHhCCCCCCeEEECCCCCCHHHHHHHHHHHH
Confidence 45555555556655555689999999999999998888765
No 253
>2rhm_A Putative kinase; P-loop containing nucleoside triphosphate hydrolases fold, S genomics, joint center for structural genomics, JCSG; HET: MSE; 1.70A {Chloroflexus aurantiacus}
Probab=78.83 E-value=1.6 Score=38.26 Aligned_cols=27 Identities=15% Similarity=0.097 Sum_probs=22.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
...++.+++|+|||.++-.++..++.+
T Consensus 6 ~~I~l~G~~GsGKST~~~~L~~~l~~~ 32 (193)
T 2rhm_A 6 ALIIVTGHPATGKTTLSQALATGLRLP 32 (193)
T ss_dssp EEEEEEESTTSSHHHHHHHHHHHHTCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHcCCe
Confidence 356888999999999998888877644
No 254
>1y63_A LMAJ004144AAA protein; structural genomics, protein structure initiative, PSI, SGPP structural genomics of pathogenic protozoa consortium; HET: ADP; 1.70A {Leishmania major} SCOP: c.37.1.1
Probab=78.69 E-value=1.6 Score=38.31 Aligned_cols=23 Identities=22% Similarity=0.163 Sum_probs=20.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
...+|.+++|+|||.++-.++..
T Consensus 11 ~~I~l~G~~GsGKSTv~~~La~~ 33 (184)
T 1y63_A 11 INILITGTPGTGKTSMAEMIAAE 33 (184)
T ss_dssp CEEEEECSTTSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHh
Confidence 46889999999999999888887
No 255
>1ex7_A Guanylate kinase; substrate-induced FIT, domain movement, GMP, ATP, substrate specificity, X-RAY diffraction, transferase; HET: 5GP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1ex6_A* 1gky_A* 3sqk_A 4f4j_A
Probab=78.60 E-value=1.8 Score=38.35 Aligned_cols=26 Identities=27% Similarity=0.262 Sum_probs=20.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
|..+|++|.|+|||.+.-.++.....
T Consensus 2 RpIVi~GPSG~GK~Tl~~~L~~~~~~ 27 (186)
T 1ex7_A 2 RPIVISGPSGTGKSTLLKKLFAEYPD 27 (186)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHCTT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCCC
Confidence 57899999999999887666666543
No 256
>3be4_A Adenylate kinase; malaria, cryptosporidium parvum nonprotein inhibitors, nucleotide-binding, transferase; HET: AP5; 1.60A {Cryptosporidium parvum iowa II}
Probab=78.42 E-value=1.3 Score=40.03 Aligned_cols=26 Identities=15% Similarity=0.011 Sum_probs=22.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...+|.+++|+|||.++-.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~a~~La~~l~~ 31 (217)
T 3be4_A 6 HNLILIGAPGSGKGTQCEFIKKEYGL 31 (217)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCc
Confidence 35788899999999999998888764
No 257
>1kag_A SKI, shikimate kinase I; transferase, structural genomics, PSI, protein structure initiative; 2.05A {Escherichia coli} SCOP: c.37.1.2
Probab=78.37 E-value=1.9 Score=37.02 Aligned_cols=25 Identities=36% Similarity=0.481 Sum_probs=21.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
..+|.+|+|+|||.++-.++..++.
T Consensus 6 ~i~l~G~~GsGKSTl~~~La~~l~~ 30 (173)
T 1kag_A 6 NIFLVGPMGAGKSTIGRQLAQQLNM 30 (173)
T ss_dssp CEEEECCTTSCHHHHHHHHHHHTTC
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCC
Confidence 6789999999999998888877653
No 258
>3dl0_A Adenylate kinase; phosphotransferase, zinc coordination, ATP-binding, binding, nucleotide biosynthesis, nucleotide-binding, trans; HET: AP5; 1.58A {Bacillus subtilis} PDB: 1p3j_A* 2ori_A* 2eu8_A* 2oo7_A* 2p3s_A* 2qaj_A* 2osb_A* 3dkv_A* 1zin_A* 1zio_A* 1zip_A* 1s3g_A*
Probab=78.22 E-value=1.8 Score=38.89 Aligned_cols=26 Identities=19% Similarity=0.138 Sum_probs=21.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3dl0_A 2 NLVLMGLPGAGKGTQGERIVEKYGIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 36789999999999999888877543
No 259
>1e6c_A Shikimate kinase; phosphoryl transfer, ADP, shikimate pathway, P-loop protein, transferase; 1.8A {Erwinia chrysanthemi} SCOP: c.37.1.2 PDB: 1shk_A 2shk_A*
Probab=78.14 E-value=1.7 Score=37.33 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=22.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++.+
T Consensus 4 ~I~l~G~~GsGKsT~a~~La~~lg~~ 29 (173)
T 1e6c_A 4 PIFMVGARGCGMTTVGRELARALGYE 29 (173)
T ss_dssp CEEEESCTTSSHHHHHHHHHHHHTCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 57899999999999999888877643
No 260
>3eph_A TRNA isopentenyltransferase; transferase, alternative initiation, ATP-binding, cytoplasm, mitochondrion, nucleotide-binding, nucleus; 2.95A {Saccharomyces cerevisiae} PDB: 3epj_A 3epk_A* 3epl_A*
Probab=78.13 E-value=1.1 Score=44.66 Aligned_cols=24 Identities=25% Similarity=0.318 Sum_probs=21.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
-.+|++|||+|||.++..++..+.
T Consensus 4 ~i~i~GptgsGKttla~~La~~~~ 27 (409)
T 3eph_A 4 VIVIAGTTGVGKSQLSIQLAQKFN 27 (409)
T ss_dssp EEEEEECSSSSHHHHHHHHHHHHT
T ss_pred EEEEECcchhhHHHHHHHHHHHCC
Confidence 467899999999999999988775
No 261
>1in4_A RUVB, holliday junction DNA helicase RUVB; AAA+-class ATPase, winged-helix domain, ATP hydrolysis, walker A, walker B, sensor 1, sensor 2; HET: ADP; 1.60A {Thermotoga maritima} SCOP: a.4.5.11 c.37.1.20 PDB: 1in5_A* 1in6_A* 1in8_A* 1in7_A* 1j7k_A*
Probab=78.01 E-value=3 Score=40.49 Aligned_cols=44 Identities=18% Similarity=0.181 Sum_probs=29.6
Q ss_pred HHHHHHHHHHHhC-----CCCcceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 28 PYQEKSLSKMFGN-----GRARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 28 ~yQ~~al~~~~~~-----~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
+...+.+...+.. ......++.+|+|+|||..+-.++..++.++
T Consensus 31 ~~~~~~l~~~i~~~~~~~~~~~~~ll~Gp~G~GKTTLa~~ia~~l~~~~ 79 (334)
T 1in4_A 31 ENVKKKLSLALEAAKMRGEVLDHVLLAGPPGLGKTTLAHIIASELQTNI 79 (334)
T ss_dssp HHHHHHHHHHHHHHHHHTCCCCCEEEESSTTSSHHHHHHHHHHHHTCCE
T ss_pred HHHHHHHHHHHHHHHhcCCCCCeEEEECCCCCcHHHHHHHHHHHhCCCE
Confidence 3444555544432 1224789999999999999888887766443
No 262
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=77.92 E-value=3.4 Score=39.86 Aligned_cols=49 Identities=12% Similarity=0.045 Sum_probs=39.0
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.+--|+.+.+.+.. +.. +..+|.+|.|.|||...-.++......++++.
T Consensus 14 ~~~gR~~el~~L~~-l~~---~~v~i~G~~G~GKT~L~~~~~~~~~~~~~~~~ 62 (357)
T 2fna_A 14 DFFDREKEIEKLKG-LRA---PITLVLGLRRTGKSSIIKIGINELNLPYIYLD 62 (357)
T ss_dssp GSCCCHHHHHHHHH-TCS---SEEEEEESTTSSHHHHHHHHHHHHTCCEEEEE
T ss_pred HhcChHHHHHHHHH-hcC---CcEEEECCCCCCHHHHHHHHHHhcCCCEEEEE
Confidence 35568888888888 765 38899999999999998888877766666665
No 263
>2oap_1 GSPE-2, type II secretion system protein; hexameric ATPase, hydrolase; HET: ANP; 2.95A {Archaeoglobus fulgidus} PDB: 2oaq_1
Probab=77.79 E-value=2.2 Score=44.17 Aligned_cols=39 Identities=18% Similarity=-0.030 Sum_probs=26.7
Q ss_pred cHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 27 RPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 27 r~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.+.+...+...+..+ ...+|++|||||||.+.-+++..+
T Consensus 246 ~~~~l~~l~~~v~~g--~~i~I~GptGSGKTTlL~aL~~~i 284 (511)
T 2oap_1 246 PSGVLAYLWLAIEHK--FSAIVVGETASGKTTTLNAIMMFI 284 (511)
T ss_dssp CHHHHHHHHHHHHTT--CCEEEEESTTSSHHHHHHHHGGGS
T ss_pred CHHHHHHHHHHHhCC--CEEEEECCCCCCHHHHHHHHHhhC
Confidence 344455555555555 378999999999998766665544
No 264
>1aky_A Adenylate kinase; ATP:AMP phosphotransferase, myokinase, transferase (phosphotransferase); HET: AP5; 1.63A {Saccharomyces cerevisiae} SCOP: c.37.1.1 g.41.2.1 PDB: 2aky_A* 3aky_A* 1dvr_A*
Probab=77.77 E-value=1.8 Score=39.11 Aligned_cols=26 Identities=23% Similarity=0.264 Sum_probs=22.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...++.+++|+|||.++-.++..++.
T Consensus 5 ~~I~l~G~~GsGKsT~a~~La~~l~~ 30 (220)
T 1aky_A 5 IRMVLIGPPGAGKGTQAPNLQERFHA 30 (220)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 36788999999999999988887764
No 265
>1zd8_A GTP:AMP phosphotransferase mitochondrial; ATP:AMP phosphotransferase, myokinase, structural genomics, structural genomics consortium, SGC; 1.48A {Homo sapiens} PDB: 2ak3_A*
Probab=77.72 E-value=1.7 Score=39.44 Aligned_cols=26 Identities=19% Similarity=0.243 Sum_probs=22.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...+|.+++|+|||.++-.++..++.
T Consensus 8 ~~I~l~G~~GsGKsT~a~~La~~l~~ 33 (227)
T 1zd8_A 8 LRAVIMGAPGSGKGTVSSRITTHFEL 33 (227)
T ss_dssp CEEEEEECTTSSHHHHHHHHHHHSSS
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCC
Confidence 36789999999999999888887764
No 266
>2vhj_A Ntpase P4, P4; non- hydrolysable ATP analogue, hydrolase, virus dsRNA, molecular motor, packaging ATPase, hexameric helicase; HET: ADP; 1.80A {Pseudomonas phage PHI12} PDB: 2vhq_A* 1w44_A* 1w46_A* 1w47_A* 1w48_A* 1w49_A* 1w4a_A* 1w4b_A* 1w4c_A 2vht_A* 2vhu_A* 2vhc_A*
Probab=77.65 E-value=0.96 Score=43.80 Aligned_cols=32 Identities=9% Similarity=-0.065 Sum_probs=25.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
..+|.+|+|+|||..+..++...+.+++++.-
T Consensus 125 viLI~GpPGsGKTtLAlqlA~~~G~~VlyIs~ 156 (331)
T 2vhj_A 125 MVIVTGKGNSGKTPLVHALGEALGGKDKYATV 156 (331)
T ss_dssp EEEEECSCSSSHHHHHHHHHHHHHTTSCCEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHhCCCCEEEEEe
Confidence 45889999999999998888765556666554
No 267
>3fb4_A Adenylate kinase; psychrophIle, phosphotransferase, ATP-binding, nucleotide-binding, transferase; HET: AP5; 2.00A {Marinibacillus marinus}
Probab=77.47 E-value=1.8 Score=38.84 Aligned_cols=26 Identities=15% Similarity=0.082 Sum_probs=21.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~~~~ 27 (216)
T 3fb4_A 2 NIVLMGLPGAGKGTQAEQIIEKYEIP 27 (216)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 36789999999999998888877644
No 268
>2dhr_A FTSH; AAA+ protein, hexameric Zn metalloprotease, hydrolase; HET: ADP; 3.90A {Thermus thermophilus}
Probab=77.44 E-value=2.1 Score=44.21 Aligned_cols=33 Identities=18% Similarity=0.286 Sum_probs=27.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P 76 (512)
++.+|++|+|+|||..+-+++...+.+++.+..
T Consensus 65 ~GvLL~GppGtGKTtLaraIa~~~~~~~i~i~g 97 (499)
T 2dhr_A 65 KGVLLVGPPGVGKTHLARAVAGEARVPFITASG 97 (499)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHTTCCEEEEEG
T ss_pred ceEEEECCCCCCHHHHHHHHHHHhCCCEEEEeh
Confidence 468999999999999998888887767666543
No 269
>3bs4_A Uncharacterized protein PH0321; structural genomics, unknown function, PSI-2, protein struct initiative; 1.60A {Pyrococcus horikoshii}
Probab=77.19 E-value=5.3 Score=37.27 Aligned_cols=59 Identities=5% Similarity=-0.094 Sum_probs=39.6
Q ss_pred HHHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHH---HhcCCCEEEEEcChhhHHHHHHHHHHh
Q 010367 32 KSLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVDQWAFQFKLW 91 (512)
Q Consensus 32 ~al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~Qw~~~~~~~ 91 (512)
..+..++.++ +....++.+.+|+|||..++.++ +..+.++++++-.- -..+..+.++.+
T Consensus 8 ~~LD~~l~GGl~~gs~~li~g~p~~~~~~l~~qfl~~g~~~Ge~~~~~~~~e-~~~~l~~~~~~~ 71 (260)
T 3bs4_A 8 EELDREIGKIKKHSLILIHEEDASSRGKDILFYILSRKLKSDNLVGMFSISY-PLQLIIRILSRF 71 (260)
T ss_dssp HHHHHHHCCBCTTCEEEEEECSGGGCHHHHHHHHHHHHHHTTCEEEEEECSS-CHHHHHHHHHHT
T ss_pred HHHHHHhCCCCCCCcEEEEEeCCCccHHHHHHHHHHHHHHCCCcEEEEEEeC-CHHHHHHHHHHc
Confidence 4577788775 23345666688888887666555 34466888888644 477777777776
No 270
>1e9r_A Conjugal transfer protein TRWB; coupling protein, bacterial conjugation, F1-ATPase-like quaternary structure, ring helicases; 2.4A {Escherichia coli} SCOP: c.37.1.11 PDB: 1e9s_A 1gki_A* 1gl7_A* 1gl6_A*
Probab=77.12 E-value=2.6 Score=42.57 Aligned_cols=39 Identities=18% Similarity=0.120 Sum_probs=28.8
Q ss_pred cceEEEcCCCCcHHHHHHHHH---HhcCCCEEEEEcChhhHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAA---CRIKKSCLCLATNAVSVD 82 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i---~~~~~~~Lvl~P~~~L~~ 82 (512)
.+.++.++||+|||...-.++ ...+.+++|+=|..++..
T Consensus 54 ~h~~i~G~tGsGKs~~~~~li~~~~~~g~~viv~Dpkge~~~ 95 (437)
T 1e9r_A 54 RHLLVNGATGTGKSVLLRELAYTGLLRGDRMVIVDPNGDMLS 95 (437)
T ss_dssp GCEEEEECTTSSHHHHHHHHHHHHHHTTCEEEEEEETTHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHHHHHHCCCcEEEEeCCCchhH
Confidence 488999999999998753333 234567888888877643
No 271
>3cm0_A Adenylate kinase; ATP-binding, cytoplasm, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics; 1.80A {Thermus thermophilus}
Probab=77.12 E-value=1.7 Score=37.79 Aligned_cols=24 Identities=29% Similarity=0.297 Sum_probs=20.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..++.+++|+|||.++-.++..++
T Consensus 6 ~I~l~G~~GsGKST~~~~La~~l~ 29 (186)
T 3cm0_A 6 AVIFLGPPGAGKGTQASRLAQELG 29 (186)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 568889999999999988887765
No 272
>3dzd_A Transcriptional regulator (NTRC family); sigma43 activator, AAA+ ATPase, response regulator, transcriptional activator, ATP-binding; HET: ADP; 2.40A {Aquifex aeolicus} PDB: 1zit_A 2jrl_A
Probab=76.96 E-value=3.5 Score=40.71 Aligned_cols=26 Identities=23% Similarity=0.408 Sum_probs=20.5
Q ss_pred CccEEEEcCCCCCCchHHHHHHHhcc
Q 010367 145 EWGLLLMDEVHVVPAHMFRKVISLTK 170 (512)
Q Consensus 145 ~~~lvIiDEaH~~~~~~~~~~l~~~~ 170 (512)
+=+.+++||+|.++.....+++..+.
T Consensus 222 ~~gtlfldei~~l~~~~Q~~Ll~~l~ 247 (368)
T 3dzd_A 222 DQGTLFLDEVGELDQRVQAKLLRVLE 247 (368)
T ss_dssp TTSEEEEETGGGSCHHHHHHHHHHHH
T ss_pred CCCeEEecChhhCCHHHHHHHHHHHH
Confidence 34799999999999887776666554
No 273
>1gvn_B Zeta; postsegregational killing system, plasmid; 1.95A {Streptococcus pyogenes} SCOP: c.37.1.21 PDB: 3q8x_B*
Probab=76.69 E-value=1.8 Score=41.11 Aligned_cols=32 Identities=9% Similarity=0.090 Sum_probs=24.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.-.++++|+|+|||.++-.++..+....++|.
T Consensus 34 ~livl~G~sGsGKSTla~~L~~~~~~~~~~Is 65 (287)
T 1gvn_B 34 TAFLLGGQPGSGKTSLRSAIFEETQGNVIVID 65 (287)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCCCeEEEe
Confidence 45688899999999999888877754444443
No 274
>2cdn_A Adenylate kinase; phosphoryl transfer, associative mechanism, ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase; HET: ADP; 1.9A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1p4s_A
Probab=76.52 E-value=2 Score=38.07 Aligned_cols=26 Identities=27% Similarity=0.326 Sum_probs=22.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++.+
T Consensus 22 ~I~l~G~~GsGKST~a~~La~~l~~~ 47 (201)
T 2cdn_A 22 RVLLLGPPGAGKGTQAVKLAEKLGIP 47 (201)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCc
Confidence 56788999999999999888877654
No 275
>3t61_A Gluconokinase; PSI-biology, structural genomics, protein structure initiati YORK structural genomics research consortium, nysgrc; 2.20A {Sinorhizobium meliloti}
Probab=76.48 E-value=2 Score=38.07 Aligned_cols=25 Identities=32% Similarity=0.282 Sum_probs=21.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.+|.+++|+|||.++-.++..++
T Consensus 19 ~~I~l~G~~GsGKSTla~~L~~~lg 43 (202)
T 3t61_A 19 GSIVVMGVSGSGKSSVGEAIAEACG 43 (202)
T ss_dssp SCEEEECSTTSCHHHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678999999999999888887765
No 276
>4eun_A Thermoresistant glucokinase; putative sugar kinase, enzyme function initiative, EFI, STRU genomics, transferase; 1.60A {Janibacter SP}
Probab=76.47 E-value=2.1 Score=38.05 Aligned_cols=25 Identities=20% Similarity=0.276 Sum_probs=20.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.+|.+|.|+|||.++-.++..++
T Consensus 30 ~~i~l~G~~GsGKSTl~~~L~~~~g 54 (200)
T 4eun_A 30 RHVVVMGVSGSGKTTIAHGVADETG 54 (200)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHhhC
Confidence 4678899999999999887776663
No 277
>2pt5_A Shikimate kinase, SK; aromatic amino acid biosynthesis, P-loop kinase, SHI kinase, shikimate pathway; 2.10A {Aquifex aeolicus}
Probab=76.31 E-value=2.1 Score=36.47 Aligned_cols=27 Identities=19% Similarity=0.085 Sum_probs=22.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
..+|.+++|+|||.++-.+...++.++
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~l~~~~ 28 (168)
T 2pt5_A 2 RIYLIGFMCSGKSTVGSLLSRSLNIPF 28 (168)
T ss_dssp EEEEESCTTSCHHHHHHHHHHHHTCCE
T ss_pred eEEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 357899999999999998888777443
No 278
>1tev_A UMP-CMP kinase; ploop, NMP binding region, LID region, conformational changes, transferase; 2.10A {Homo sapiens} SCOP: c.37.1.1
Probab=75.96 E-value=2 Score=37.55 Aligned_cols=25 Identities=16% Similarity=0.028 Sum_probs=21.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
..+|.+++|+|||.++-.++..++.
T Consensus 5 ~I~l~G~~GsGKsT~a~~L~~~~~~ 29 (196)
T 1tev_A 5 VVFVLGGPGAGKGTQCARIVEKYGY 29 (196)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCC
Confidence 5678899999999999888877653
No 279
>1qf9_A UMP/CMP kinase, protein (uridylmonophosphate/cytidylmonophosphate kinase); nucleoside monophosphate kinase, NMP kinase; HET: ADP C5P; 1.70A {Dictyostelium discoideum} SCOP: c.37.1.1 PDB: 1uke_A* 2ukd_A* 3ukd_A* 4ukd_A* 5ukd_A*
Probab=75.91 E-value=1.9 Score=37.58 Aligned_cols=24 Identities=13% Similarity=0.048 Sum_probs=21.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+|.+++|+|||.++-.++..++
T Consensus 8 ~I~l~G~~GsGKsT~~~~L~~~l~ 31 (194)
T 1qf9_A 8 VVFVLGGPGSGKGTQCANIVRDFG 31 (194)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 568899999999999988888776
No 280
>4a1f_A DNAB helicase, replicative DNA helicase; hydrolase, DNA replication, ATPase; HET: FLC; 2.50A {Helicobacter pylori}
Probab=75.91 E-value=6.4 Score=38.30 Aligned_cols=56 Identities=14% Similarity=0.078 Sum_probs=38.3
Q ss_pred HHHHHHHhCC-CCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChhhHHHHHHHH
Q 010367 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
..|..++.+- +..-.+|.+++|+|||..++.++.. .+.+|++++.-- -..|....+
T Consensus 34 ~~LD~~~gGl~~G~LiiIaG~pG~GKTt~al~ia~~~a~~g~~Vl~fSlEm-s~~ql~~Rl 93 (338)
T 4a1f_A 34 VQLDNYTSGFNKGSLVIIGARPSMGKTSLMMNMVLSALNDDRGVAVFSLEM-SAEQLALRA 93 (338)
T ss_dssp HHHHHHHCSBCTTCEEEEEECTTSCHHHHHHHHHHHHHHTTCEEEEEESSS-CHHHHHHHH
T ss_pred hHHHHHhcCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHHcCCeEEEEeCCC-CHHHHHHHH
Confidence 3566666432 2245788899999999998877754 467889888644 366665554
No 281
>1zp6_A Hypothetical protein ATU3015; alpha-beta protein., structural genomics, PSI, protein struc initiative; 3.20A {Agrobacterium tumefaciens str} SCOP: c.37.1.25
Probab=75.85 E-value=2.3 Score=37.19 Aligned_cols=31 Identities=16% Similarity=0.037 Sum_probs=22.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
...+|.+|+|+|||.++-.++.......+.+
T Consensus 10 ~~i~l~G~~GsGKSTl~~~La~~~~~g~i~i 40 (191)
T 1zp6_A 10 NILLLSGHPGSGKSTIAEALANLPGVPKVHF 40 (191)
T ss_dssp EEEEEEECTTSCHHHHHHHHHTCSSSCEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHhccCCCeEEE
Confidence 4678899999999998877766544444333
No 282
>1ak2_A Adenylate kinase isoenzyme-2; nucleoside monophosphate kinase, phosphotransferase; 1.92A {Bos taurus} SCOP: c.37.1.1 g.41.2.1 PDB: 2ak2_A 2c9y_A*
Probab=75.78 E-value=2.1 Score=39.06 Aligned_cols=26 Identities=23% Similarity=0.213 Sum_probs=22.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...++.+++|+|||.++-.++..++.
T Consensus 17 ~~I~l~G~~GsGKsT~a~~La~~l~~ 42 (233)
T 1ak2_A 17 VRAVLLGPPGAGKGTQAPKLAKNFCV 42 (233)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHTC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36788999999999999999888763
No 283
>2yhs_A FTSY, cell division protein FTSY; cell cycle, protein targeting, simibi class GTPase, GTP-BIND membrane, nucleotide-binding; 1.60A {Escherichia coli} PDB: 2qy9_A 2xxa_B* 1fts_A
Probab=75.69 E-value=27 Score=35.79 Aligned_cols=30 Identities=23% Similarity=0.114 Sum_probs=21.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
-..|+++.|+|||.+.-.++..+ ++++++.
T Consensus 295 VI~LVGpNGSGKTTLl~~LAgll~~~~G~V~l~ 327 (503)
T 2yhs_A 295 VILMVGVNGVGKTTTIGKLARQFEQQGKSVMLA 327 (503)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCcccHHHHHHHHHHHhhhcCCeEEEe
Confidence 45688999999998866655433 4677776
No 284
>2vli_A Antibiotic resistance protein; transferase, tunicamycin, phosphotransferase; 1.95A {Deinococcus radiodurans}
Probab=75.04 E-value=1.7 Score=37.71 Aligned_cols=28 Identities=25% Similarity=0.195 Sum_probs=20.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (512)
..+|.+++|+|||.++-.++..++.+++
T Consensus 7 ~I~l~G~~GsGKST~a~~La~~l~~~~i 34 (183)
T 2vli_A 7 IIWINGPFGVGKTHTAHTLHERLPGSFV 34 (183)
T ss_dssp EEEEECCC----CHHHHHHHHHSTTCEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCCCEE
Confidence 5778999999999999999888877655
No 285
>2bwj_A Adenylate kinase 5; phosphoryl transfer reaction, transferase; HET: AMP; 2.3A {Homo sapiens}
Probab=74.99 E-value=2.1 Score=37.57 Aligned_cols=24 Identities=17% Similarity=0.014 Sum_probs=21.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+|.+++|+|||.++-.++..++
T Consensus 14 ~I~l~G~~GsGKsT~a~~L~~~l~ 37 (199)
T 2bwj_A 14 IIFIIGGPGSGKGTQCEKLVEKYG 37 (199)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 678899999999999988888776
No 286
>3sr0_A Adenylate kinase; phosphoryl transfer analogue, ALF4, transferase (phosphotran phosphoryl transfer, nucleotide-binding; HET: ADP AMP; 1.56A {Aquifex aeolicus} PDB: 2rh5_A 2rgx_A*
Probab=74.92 E-value=2.2 Score=38.43 Aligned_cols=24 Identities=25% Similarity=0.126 Sum_probs=20.8
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
.++.+|+||||+.++-.++..++-
T Consensus 3 Iil~GpPGsGKgTqa~~La~~~g~ 26 (206)
T 3sr0_A 3 LVFLGPPGAGKGTQAKRLAKEKGF 26 (206)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHCC
T ss_pred EEEECCCCCCHHHHHHHHHHHHCC
Confidence 578899999999999999888753
No 287
>1e4v_A Adenylate kinase; transferase(phosphotransferase); HET: AP5; 1.85A {Escherichia coli} SCOP: c.37.1.1 g.41.2.1 PDB: 1e4y_A* 1ake_A* 1ank_A* 2eck_A* 3hpq_A* 4ake_A 3hpr_A*
Probab=74.74 E-value=2.3 Score=38.20 Aligned_cols=26 Identities=15% Similarity=-0.073 Sum_probs=21.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++.+
T Consensus 2 ~I~l~G~~GsGKsT~a~~L~~~~g~~ 27 (214)
T 1e4v_A 2 RIILLGAPVAGKGTQAQFIMEKYGIP 27 (214)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHCCC
T ss_pred EEEEECCCCCCHHHHHHHHHHHhCCe
Confidence 36789999999999998888877533
No 288
>3a4m_A L-seryl-tRNA(SEC) kinase; P-loop motif, walker A motif, ATP binding motif, ATP- binding, nucleotide-binding, transferase; HET: ADP; 1.79A {Methanocaldococcus jannaschii} PDB: 3a4l_A* 3a4n_A 3am1_A* 3add_A* 3adc_A* 3adb_A*
Probab=74.73 E-value=2.9 Score=38.94 Aligned_cols=30 Identities=23% Similarity=0.077 Sum_probs=23.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh---cCCCEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl 74 (512)
-.+++|++|+|||.++-.++.. .+.+++++
T Consensus 6 lIvl~G~pGSGKSTla~~La~~L~~~g~~~i~~ 38 (260)
T 3a4m_A 6 LIILTGLPGVGKSTFSKNLAKILSKNNIDVIVL 38 (260)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHhCCCEEEEE
Confidence 5788999999999999888876 44455544
No 289
>1zak_A Adenylate kinase; ATP:AMP-phosphotransferase, transferase; HET: AP5; 3.50A {Zea mays} SCOP: c.37.1.1 g.41.2.1
Probab=74.55 E-value=2 Score=38.79 Aligned_cols=26 Identities=12% Similarity=-0.054 Sum_probs=22.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...+|.+++|+|||.++-.++..++.
T Consensus 6 ~~I~l~G~~GsGKsT~~~~La~~l~~ 31 (222)
T 1zak_A 6 LKVMISGAPASGKGTQCELIKTKYQL 31 (222)
T ss_dssp CCEEEEESTTSSHHHHHHHHHHHHCC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhCC
Confidence 36789999999999999999888763
No 290
>1kht_A Adenylate kinase; phosphotransferase, signaling protein, transferase; HET: AMP; 2.50A {Methanococcus voltae} SCOP: c.37.1.1 PDB: 3h86_B* 1ki9_A
Probab=74.54 E-value=1.7 Score=37.82 Aligned_cols=24 Identities=13% Similarity=0.090 Sum_probs=20.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+|.+++|+|||.++-.++..++
T Consensus 5 ~I~i~G~~GsGKsT~~~~L~~~l~ 28 (192)
T 1kht_A 5 VVVVTGVPGVGSTTSSQLAMDNLR 28 (192)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 578899999999999988887665
No 291
>1nks_A Adenylate kinase; thermophilic, transferase; HET: AMP ADP; 2.57A {Sulfolobus acidocaldarius} SCOP: c.37.1.1
Probab=74.46 E-value=2.5 Score=36.73 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=20.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+|.+++|+|||.++-.++..++
T Consensus 3 ~I~i~G~~GsGKsT~~~~L~~~l~ 26 (194)
T 1nks_A 3 IGIVTGIPGVGKSTVLAKVKEILD 26 (194)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHHH
Confidence 467899999999999988887664
No 292
>2p5t_B PEZT; postsegregational killing system, phosphoryltransferase, HEL helix motif, transcription regulator; 3.20A {Streptococcus pneumoniae}
Probab=74.44 E-value=1.8 Score=40.20 Aligned_cols=32 Identities=13% Similarity=0.110 Sum_probs=24.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
...++.+++|+|||.++-.++..++..++++.
T Consensus 33 ~~i~l~G~~GsGKSTla~~L~~~l~~~~~~~~ 64 (253)
T 2p5t_B 33 IAILLGGQSGAGKTTIHRIKQKEFQGNIVIID 64 (253)
T ss_dssp EEEEEESCGGGTTHHHHHHHHHHTTTCCEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHhcCCCcEEEe
Confidence 45688899999999999888888765444443
No 293
>3umf_A Adenylate kinase; rossmann fold, transferase; 2.05A {Schistosoma mansoni}
Probab=74.44 E-value=2.2 Score=38.68 Aligned_cols=25 Identities=12% Similarity=0.084 Sum_probs=21.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+-.+|.+|+|+||+.++-.++..++
T Consensus 30 kiI~llGpPGsGKgTqa~~L~~~~g 54 (217)
T 3umf_A 30 KVIFVLGGPGSGKGTQCEKLVQKFH 54 (217)
T ss_dssp EEEEEECCTTCCHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHC
Confidence 3567789999999999998888875
No 294
>2jaq_A Deoxyguanosine kinase; transferase, deoxyribonucleoside kinase; HET: DCP; 2.3A {Mycoplasma mycoides subsp} PDB: 2jat_A* 2jas_A*
Probab=74.33 E-value=2.2 Score=37.53 Aligned_cols=26 Identities=23% Similarity=0.234 Sum_probs=21.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
..+|.+++|+|||.++-.++..++..
T Consensus 2 ~I~i~G~~GsGKsT~~~~L~~~l~~~ 27 (205)
T 2jaq_A 2 KIAIFGTVGAGKSTISAEISKKLGYE 27 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHCCE
T ss_pred EEEEECCCccCHHHHHHHHHHhcCCc
Confidence 35789999999999999888887753
No 295
>3bgw_A DNAB-like replicative helicase; ATPase, replication; 3.91A {Bacillus phage SPP1}
Probab=74.29 E-value=3.6 Score=41.72 Aligned_cols=57 Identities=12% Similarity=0.030 Sum_probs=37.8
Q ss_pred HHHHHHHhCC-CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHHHH
Q 010367 32 KSLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQFK 89 (512)
Q Consensus 32 ~al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~~~ 89 (512)
..+..++++- +..-.+|.+++|.|||..++.++... +.+|++++.-- -..|+...+.
T Consensus 185 ~~LD~~lgGl~~G~liiIaG~pG~GKTtlal~ia~~~a~~g~~vl~fSlEm-s~~ql~~R~~ 245 (444)
T 3bgw_A 185 TELDRMTYGYKRRNFVLIAARPSMGKTAFALKQAKNMSDNDDVVNLHSLEM-GKKENIKRLI 245 (444)
T ss_dssp HHHHHHHSSBCSSCEEEEEECSSSSHHHHHHHHHHHHHHTTCEEEEECSSS-CTTHHHHHHH
T ss_pred HHHHhhcCCCCCCcEEEEEeCCCCChHHHHHHHHHHHHHcCCEEEEEECCC-CHHHHHHHHH
Confidence 3466666421 23457888999999999988777543 56788887543 3555555544
No 296
>1ny5_A Transcriptional regulator (NTRC family); AAA+ ATPase, sigma54 activator, bacterial transcription, DIM transcription; HET: ADP; 2.40A {Aquifex aeolicus} SCOP: c.23.1.1 c.37.1.20 PDB: 1ny6_A* 3m0e_A* 1zy2_A*
Probab=73.96 E-value=6.8 Score=38.83 Aligned_cols=93 Identities=16% Similarity=0.121 Sum_probs=50.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC---CCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccccCCCeEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK---KSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERFRGNAGVVVTT 120 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~Ivv~T 120 (512)
.+.++.+++|+|||.++-.+-.... ++++.+- -.++..+... ...+|.... .|+|.... .
T Consensus 161 ~~vli~Ge~GtGK~~lAr~ih~~s~r~~~~fv~v~-~~~~~~~~~~--~elfg~~~g---~~tga~~~-----------~ 223 (387)
T 1ny5_A 161 CPVLITGESGVGKEVVARLIHKLSDRSKEPFVALN-VASIPRDIFE--AELFGYEKG---AFTGAVSS-----------K 223 (387)
T ss_dssp SCEEEECSTTSSHHHHHHHHHHHSTTTTSCEEEEE-TTTSCHHHHH--HHHHCBCTT---SSTTCCSC-----------B
T ss_pred CCeEEecCCCcCHHHHHHHHHHhcCCCCCCeEEEe-cCCCCHHHHH--HHhcCCCCC---CCCCcccc-----------c
Confidence 4789999999999988755544332 3554443 3344333221 122333211 12222111 0
Q ss_pred hhhhhccCCCchhHHHHHHHHhcCCccEEEEcCCCCCCchHHHHHHHhcc
Q 010367 121 YNMVAFGGKRSEESEKIIEEIRNREWGLLLMDEVHVVPAHMFRKVISLTK 170 (512)
Q Consensus 121 ~~~l~~~~~r~~~~~~~~~~l~~~~~~lvIiDEaH~~~~~~~~~~l~~~~ 170 (512)
.+. +. ..+-+.+++||++.++.....+++..+.
T Consensus 224 ~g~--------------~~---~a~~gtlfldei~~l~~~~q~~Ll~~l~ 256 (387)
T 1ny5_A 224 EGF--------------FE---LADGGTLFLDEIGELSLEAQAKLLRVIE 256 (387)
T ss_dssp CCH--------------HH---HTTTSEEEEESGGGCCHHHHHHHHHHHH
T ss_pred CCc--------------ee---eCCCcEEEEcChhhCCHHHHHHHHHHHh
Confidence 111 11 1345899999999999887666666554
No 297
>2r2a_A Uncharacterized protein; zonular occludens toxin, structural genomics, APC84050.2, PS protein structure initiative; HET: MSE; 1.82A {Neisseria meningitidis MC58}
Probab=73.80 E-value=2.8 Score=37.47 Aligned_cols=22 Identities=32% Similarity=0.280 Sum_probs=18.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (512)
-.++.+++|+|||..++..+..
T Consensus 7 i~l~tG~pGsGKT~~a~~~~~~ 28 (199)
T 2r2a_A 7 ICLITGTPGSGKTLKMVSMMAN 28 (199)
T ss_dssp EEEEECCTTSSHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHH
Confidence 4578999999999998876544
No 298
>2bdt_A BH3686; alpha-beta protein, structural genomics, PSI, protein struct initiative, northeast structural genomics consortium, NESG, function; 2.40A {Bacillus halodurans} SCOP: c.37.1.25
Probab=73.48 E-value=2.9 Score=36.55 Aligned_cols=25 Identities=32% Similarity=0.353 Sum_probs=19.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
-.+|.+|+|+|||.++-.++....+
T Consensus 4 ii~l~G~~GaGKSTl~~~L~~~~~g 28 (189)
T 2bdt_A 4 LYIITGPAGVGKSTTCKRLAAQLDN 28 (189)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHSSS
T ss_pred EEEEECCCCCcHHHHHHHHhcccCC
Confidence 4578899999999988777664433
No 299
>1ukz_A Uridylate kinase; transferase; HET: ADP AMP; 1.90A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 1uky_A*
Probab=73.36 E-value=2.7 Score=37.21 Aligned_cols=26 Identities=15% Similarity=-0.054 Sum_probs=21.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...+|.+++|+|||.++-.++..++.
T Consensus 16 ~~I~l~G~~GsGKsT~~~~L~~~~g~ 41 (203)
T 1ukz_A 16 SVIFVLGGPGAGKGTQCEKLVKDYSF 41 (203)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHSSC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcCc
Confidence 35678899999999999888877753
No 300
>2z0h_A DTMP kinase, thymidylate kinase; ATP-binding, nucleotide biosynthesis, nucleotide-binding, transferase, structural genomics, NPPSFA; HET: ADP TYD; 2.10A {Thermotoga maritima} PDB: 3hjn_A*
Probab=73.35 E-value=3.1 Score=36.39 Aligned_cols=29 Identities=21% Similarity=-0.068 Sum_probs=22.2
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
.++.++.|+|||.++-.+...+ +.+++..
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~v~~~ 34 (197)
T 2z0h_A 3 ITFEGIDGSGKSTQIQLLAQYLEKRGKKVILK 34 (197)
T ss_dssp EEEECSTTSSHHHHHHHHHHHHHHCCC-EEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEEe
Confidence 4788999999999998888776 5565433
No 301
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=72.57 E-value=5.4 Score=38.29 Aligned_cols=49 Identities=12% Similarity=0.009 Sum_probs=38.4
Q ss_pred CCCCcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 23 HAQPRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.+--|+.+.+.+..++..+ +..+|.+|.|.|||...-.++...+ ++++.
T Consensus 13 ~~~gR~~el~~L~~~l~~~--~~v~i~G~~G~GKT~Ll~~~~~~~~--~~~~~ 61 (350)
T 2qen_A 13 DIFDREEESRKLEESLENY--PLTLLLGIRRVGKSSLLRAFLNERP--GILID 61 (350)
T ss_dssp GSCSCHHHHHHHHHHHHHC--SEEEEECCTTSSHHHHHHHHHHHSS--EEEEE
T ss_pred hcCChHHHHHHHHHHHhcC--CeEEEECCCcCCHHHHHHHHHHHcC--cEEEE
Confidence 3567888888888888754 4889999999999999888887764 55553
No 302
>1ly1_A Polynucleotide kinase; PNK, phosphatase, transferase; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1
Probab=72.54 E-value=2.2 Score=36.70 Aligned_cols=21 Identities=19% Similarity=0.007 Sum_probs=18.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAAC 65 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~ 65 (512)
-.++.+++|+|||.++-.++.
T Consensus 4 ~I~i~G~~GsGKST~a~~L~~ 24 (181)
T 1ly1_A 4 IILTIGCPGSGKSTWAREFIA 24 (181)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEecCCCCCHHHHHHHHHh
Confidence 467899999999999888776
No 303
>2v54_A DTMP kinase, thymidylate kinase; nucleotide biosynthesis, ATP-binding, nucleotide-binding, poxvirus, transferase; HET: TYD POP; 2.4A {Vaccinia virus copenhagen} PDB: 2w0s_A*
Probab=72.39 E-value=3.1 Score=36.71 Aligned_cols=31 Identities=13% Similarity=-0.047 Sum_probs=24.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC-CCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK-KSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~-~~~Lvl 74 (512)
...+|.+++|+|||.++-.++..+. .+++.+
T Consensus 5 ~~I~l~G~~GsGKsT~~~~L~~~l~g~~~~~~ 36 (204)
T 2v54_A 5 ALIVFEGLDKSGKTTQCMNIMESIPANTIKYL 36 (204)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHTSCGGGEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHCCCceEEE
Confidence 3678899999999999999888873 345543
No 304
>2pez_A Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthetase 1 (PAPS synthetase...; NMP-kinase fold, protein in complex with nucleic acid; HET: GGZ DAT; 1.40A {Homo sapiens} PDB: 2pey_A* 2ax4_A*
Probab=72.01 E-value=3.9 Score=35.31 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=23.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
...++.+++|+|||.++-.++..+ +.+++.+
T Consensus 6 ~~i~l~G~~GsGKST~~~~L~~~l~~~g~~~i~~ 39 (179)
T 2pez_A 6 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 39 (179)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHhhCCCcEEEE
Confidence 356788999999999987777665 4455544
No 305
>3sxu_A DNA polymerase III subunit CHI; DNA replication, CHI binds to SSB and PSI, transferase; HET: DNA; 1.85A {Escherichia coli} SCOP: c.128.1.1 PDB: 1em8_A*
Probab=71.23 E-value=45 Score=27.98 Aligned_cols=116 Identities=5% Similarity=-0.007 Sum_probs=71.5
Q ss_pred HHHHHHHHHhhhcCCCeEEEEecCHHHHHHHHHHhC----CCc-eeCCCCHHHHHHHHHHhhCCCCccEEEEeCCCcccc
Q 010367 254 RACEFLIRFHEQQRGDKIIVFADNLFALTEYAMKLR----KPM-IYGATSHVERTKILQAFKCSRDLNTIFLSKVGDNSI 328 (512)
Q Consensus 254 ~~l~~ll~~~~~~~g~k~iVf~~~~~~~~~l~~~L~----~~~-i~g~~~~~eR~~il~~F~~~~~~~vlv~t~~~~~Gl 328 (512)
..+-.|+...- ..|.+++|.|.+.+.++.+-+.|- -.+ =||-..... . ..-.|++++.-..
T Consensus 26 ~~aCrL~~ka~-~~G~rv~V~~~d~~~a~~LD~~LW~~~~~sFlPH~~~~~~~---------~-~~~PV~L~~~~~~--- 91 (150)
T 3sxu_A 26 QLVCEIAAERW-RSGKRVLIACEDEKQAYRLDEALWARPAESFVPHNLAGEGP---------R-GGAPVEIAWPQKR--- 91 (150)
T ss_dssp HHHHHHHHHHH-HTTCCEEEECSSHHHHHHHHHHTTTSSTTCCCCEEETTCSS---------T-TCCSEEEECTTSC---
T ss_pred HHHHHHHHHHH-HcCCeEEEECCCHHHHHHHHHHHhCCCCCcccCCccCCCCC---------C-CCCCEEEeCCCCC---
Confidence 33345555544 679999999999999999999992 222 233111000 0 1346777753211
Q ss_pred cCccccEEEEecCCCCCHHHHHHHhhcccccCCCccccccCCCCceeEEEEEEEeCCcHhhHHHHHHHHHHHhcCCceEE
Q 010367 329 DIPEANVIIQISSHAGSRRQEAQRLGRILRAKGKLEDRMAGGKEEYNAFFYSLVSTDTQEMFYSTKRQQFLIDQGYSFKV 408 (512)
Q Consensus 329 Dlp~~~~vI~~~~~~~s~~~~~Q~~GR~~R~g~~~~~~~~~~~~~~~~~~y~lv~~~t~e~~~~~~r~~~l~~~g~~~~~ 408 (512)
..+..+++|+++... +. -.+|-- .++.+|..+......++.|-+.+.+.||....
T Consensus 92 ~~~~~~vLinL~~~~--p~----~~~~f~-------------------Rvie~v~~d~~~~~~AR~r~k~yr~~G~~l~~ 146 (150)
T 3sxu_A 92 SSSRRDILISLRTSF--AD----FATAFT-------------------EVVDFVPYEDSLKQLARERYKAYRVAGFNLNT 146 (150)
T ss_dssp CCSCCSEEEECCSSC--CG----GGGGCS-------------------EEEEEECSSGGGHHHHHHHHHHHHHTTCEEEE
T ss_pred CCCcCCEEEECCCCC--Cc----cccCCC-------------------EEEEEeCCCHHHHHHHHHHHHHHHHCCCCcEE
Confidence 123467999986542 21 122222 24458887877778889999999999987654
No 306
>2pbr_A DTMP kinase, thymidylate kinase; transferase, nucleotide biosynthesis, TMP-binding, A binding, structural genomics, NPPSFA; 1.96A {Aquifex aeolicus}
Probab=71.11 E-value=3.9 Score=35.57 Aligned_cols=28 Identities=11% Similarity=-0.191 Sum_probs=22.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc---CCCEEE
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI---KKSCLC 73 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~---~~~~Lv 73 (512)
.+|.+++|+|||.++-.++..+ +-+++.
T Consensus 3 I~l~G~~GsGKsT~~~~L~~~l~~~g~~~i~ 33 (195)
T 2pbr_A 3 IAFEGIDGSGKTTQAKKLYEYLKQKGYFVSL 33 (195)
T ss_dssp EEEECSTTSCHHHHHHHHHHHHHHTTCCEEE
T ss_pred EEEECCCCCCHHHHHHHHHHHHHHCCCeEEE
Confidence 5788999999999998888776 445443
No 307
>3tau_A Guanylate kinase, GMP kinase; structural genomics, center for structural genomics of infec diseases, csgid, putative guanylate kinase; HET: MSE; 2.05A {Listeria monocytogenes}
Probab=70.88 E-value=2.7 Score=37.57 Aligned_cols=25 Identities=20% Similarity=0.134 Sum_probs=20.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.+|++|+|+|||.++-.++....
T Consensus 9 ~~i~l~GpsGsGKsTl~~~L~~~~~ 33 (208)
T 3tau_A 9 LLIVLSGPSGVGKGTVREAVFKDPE 33 (208)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHSTT
T ss_pred cEEEEECcCCCCHHHHHHHHHhhCC
Confidence 3578889999999999888776654
No 308
>1g8p_A Magnesium-chelatase 38 kDa subunit; parallel beta sheet, P-loop, rossman fold, AAA+, photosynthesis, metal transport; 2.10A {Rhodobacter capsulatus} SCOP: c.37.1.20 PDB: 2x31_G
Probab=70.87 E-value=2.7 Score=40.75 Aligned_cols=26 Identities=19% Similarity=0.150 Sum_probs=22.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
.+.+|.+|+|+|||.++-.++..+..
T Consensus 46 ~~vLl~G~~GtGKT~la~~la~~~~~ 71 (350)
T 1g8p_A 46 GGVLVFGDRGTGKSTAVRALAALLPE 71 (350)
T ss_dssp CCEEEECCGGGCTTHHHHHHHHHSCC
T ss_pred ceEEEECCCCccHHHHHHHHHHhCcc
Confidence 37999999999999999888877653
No 309
>2px0_A Flagellar biosynthesis protein FLHF; SRP GTPase, flagellum, protein transport, biosynthetic protein; HET: GNP; 3.00A {Bacillus subtilis} PDB: 2px3_A* 3syn_A*
Probab=70.79 E-value=4.2 Score=38.74 Aligned_cols=32 Identities=19% Similarity=0.148 Sum_probs=23.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh----cCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR----IKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~----~~~~~Lvl~ 75 (512)
...++++|+|+|||.++..++.. .+++++++.
T Consensus 106 ~vi~lvG~~GsGKTTl~~~LA~~l~~~~G~~V~lv~ 141 (296)
T 2px0_A 106 KYIVLFGSTGAGKTTTLAKLAAISMLEKHKKIAFIT 141 (296)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHHTTCCCEEEEE
T ss_pred cEEEEECCCCCCHHHHHHHHHHHHHHhcCCEEEEEe
Confidence 45678899999999987766643 244777765
No 310
>2qor_A Guanylate kinase; phosphotransferase, purine metabolism, structural genomics, structural genomics of pathogenic protozoa consortium; HET: 5GP POP; 1.80A {Plasmodium vivax}
Probab=70.75 E-value=3.2 Score=36.87 Aligned_cols=25 Identities=16% Similarity=0.211 Sum_probs=20.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.+|++|+|+|||.++-.++..+.
T Consensus 13 ~~i~l~G~sGsGKsTl~~~L~~~~~ 37 (204)
T 2qor_A 13 PPLVVCGPSGVGKGTLIKKVLSEFP 37 (204)
T ss_dssp CCEEEECCTTSCHHHHHHHHHHHCT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhCc
Confidence 4678999999999998888777663
No 311
>1knq_A Gluconate kinase; ALFA/beta structure, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.17 PDB: 1ko1_A 1ko4_A 1ko5_A* 1ko8_A* 1kof_A*
Probab=70.73 E-value=3.1 Score=35.71 Aligned_cols=25 Identities=24% Similarity=0.320 Sum_probs=20.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...+|.++.|+|||.++-.++..++
T Consensus 9 ~~i~l~G~~GsGKSTl~~~l~~~~g 33 (175)
T 1knq_A 9 HIYVLMGVSGSGKSAVASEVAHQLH 33 (175)
T ss_dssp EEEEEECSTTSCHHHHHHHHHHHHT
T ss_pred cEEEEEcCCCCCHHHHHHHHHHhhC
Confidence 3567889999999999877776654
No 312
>3nwj_A ATSK2; P loop, shikimate, nucleoside monophosphate kinase, shikimat ATP binding, chloroplast, transferase; 2.35A {Arabidopsis thaliana}
Probab=70.71 E-value=3.3 Score=38.47 Aligned_cols=27 Identities=33% Similarity=0.320 Sum_probs=23.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
...+|.+++|+|||.++-.++..++-+
T Consensus 49 ~~i~l~G~~GsGKSTl~~~La~~lg~~ 75 (250)
T 3nwj_A 49 RSMYLVGMMGSGKTTVGKIMARSLGYT 75 (250)
T ss_dssp CCEEEECSTTSCHHHHHHHHHHHHTCE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCc
Confidence 378999999999999998888877643
No 313
>3tlx_A Adenylate kinase 2; structural genomics, structural genomics consortium, SGC, RO fold, transferase, ATP binding, phosphorylation; HET: ADP ATP AMP; 2.75A {Plasmodium falciparum}
Probab=70.23 E-value=3.3 Score=38.12 Aligned_cols=26 Identities=15% Similarity=0.037 Sum_probs=22.2
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
....+|.+|.|+|||.++-.++..++
T Consensus 29 ~~~I~l~G~~GsGKsT~a~~L~~~~g 54 (243)
T 3tlx_A 29 DGRYIFLGAPGSGKGTQSLNLKKSHC 54 (243)
T ss_dssp CEEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred CcEEEEECCCCCCHHHHHHHHHHHhC
Confidence 34688999999999999988887775
No 314
>2xb4_A Adenylate kinase; ATP-binding, nucleotide-binding, transferase; HET: SRT; 1.80A {Desulfovibrio gigas} PDB: 3l0s_A* 3l0p_A*
Probab=70.17 E-value=3.1 Score=37.64 Aligned_cols=24 Identities=25% Similarity=0.289 Sum_probs=20.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..++.+++|+|||.++-.++..++
T Consensus 2 ~I~l~G~~GsGKsT~a~~La~~lg 25 (223)
T 2xb4_A 2 NILIFGPNGSGKGTQGNLVKDKYS 25 (223)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 357899999999999988887775
No 315
>2yvu_A Probable adenylyl-sulfate kinase; transferase, structural genomics, NPPSFA, national P protein structural and functional analyses; 2.10A {Aeropyrum pernix}
Probab=70.07 E-value=3.8 Score=35.62 Aligned_cols=31 Identities=16% Similarity=0.024 Sum_probs=23.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
...++.+++|+|||.++-.++..+ +.++.++
T Consensus 14 ~~i~l~G~~GsGKsT~~~~L~~~l~~~~~~~~~~ 47 (186)
T 2yvu_A 14 IVVWLTGLPGSGKTTIATRLADLLQKEGYRVEVL 47 (186)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred cEEEEEcCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 456788999999999988777655 3455555
No 316
>3u4q_B ATP-dependent helicase/deoxyribonuclease subunit; helicase, nuclease, double strand DNA repair, protein-DNA CO hydrolase-DNA complex; HET: DNA; 2.80A {Bacillus subtilis} PDB: 3u44_B*
Probab=69.88 E-value=4.2 Score=46.78 Aligned_cols=46 Identities=13% Similarity=0.159 Sum_probs=33.4
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc------CCCEEEEEcChhhHHHHHHHHHHhh
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI------KKSCLCLATNAVSVDQWAFQFKLWS 92 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~------~~~~Lvl~P~~~L~~Qw~~~~~~~~ 92 (512)
-+|.+..|+|||.+.+.-+..+ ..++|+|||... ..+...++...+
T Consensus 4 ~lV~agAGSGKT~~l~~ri~~ll~~~~~~~~il~lVP~q~-TFt~~~rl~~~l 55 (1166)
T 3u4q_B 4 EFLVGRSGSGKTKLIINSIQDELRRAPFGKPIIFLVPDQM-TFLMEYELAKTP 55 (1166)
T ss_dssp EEEEECTTSSHHHHHHHHHHHHHHHCTTSSCEEEECCGGG-HHHHHHHHTCCS
T ss_pred EEEEeCCCCChHHHHHHHHHHHHHhCCCCCcEEEEecCcc-cHHHHHHHHHhh
Confidence 3788999999999976555432 268999999884 666666665543
No 317
>3nbx_X ATPase RAVA; AAA+ ATPase, alpha-beta-alpha structure, rossman fold, hydro; HET: ADP; 2.91A {Escherichia coli}
Probab=69.78 E-value=2.9 Score=43.12 Aligned_cols=24 Identities=25% Similarity=0.296 Sum_probs=21.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+.+|.+|+|+|||..+-.++....
T Consensus 43 ~VLL~GpPGtGKT~LAraLa~~l~ 66 (500)
T 3nbx_X 43 SVFLLGPPGIAKSLIARRLKFAFQ 66 (500)
T ss_dssp EEEEECCSSSSHHHHHHHGGGGBS
T ss_pred eeEeecCchHHHHHHHHHHHHHHh
Confidence 899999999999999988887764
No 318
>1kgd_A CASK, peripheral plasma membrane CASK; maguk, guanylate kinase like domain, protein binding; 1.31A {Homo sapiens} SCOP: c.37.1.1
Probab=69.69 E-value=3.3 Score=36.05 Aligned_cols=24 Identities=8% Similarity=0.214 Sum_probs=19.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+-.+|++|+|+|||.+.-.++...
T Consensus 6 ~~i~i~GpsGsGKSTL~~~L~~~~ 29 (180)
T 1kgd_A 6 KTLVLLGAHGVGRRHIKNTLITKH 29 (180)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHC
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 367889999999999887777654
No 319
>2grj_A Dephospho-COA kinase; TM1387, EC 2.7.1.24, dephosphocoenzyme kinase, structural genomics, joint center for structural GE JCSG; HET: ADP COD; 2.60A {Thermotoga maritima}
Probab=68.83 E-value=3.7 Score=36.41 Aligned_cols=24 Identities=21% Similarity=0.004 Sum_probs=19.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+++|||||.++-.++..++
T Consensus 14 iIgltG~~GSGKSTva~~L~~~lg 37 (192)
T 2grj_A 14 VIGVTGKIGTGKSTVCEILKNKYG 37 (192)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 456779999999999988887765
No 320
>2j37_W Signal recognition particle 54 kDa protein (SRP54); ribosome, SRP, translation/RNA; 8.00A {Canis SP} PDB: 1wgw_A
Probab=68.54 E-value=8.6 Score=39.61 Aligned_cols=33 Identities=15% Similarity=0.018 Sum_probs=25.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (512)
+..++++++|+|||.++..++..+ +++++++..
T Consensus 102 ~vI~ivG~~GvGKTTl~~kLA~~l~~~G~kVllVd~ 137 (504)
T 2j37_W 102 NVIMFVGLQGSGKTTTCSKLAYYYQRKGWKTCLICA 137 (504)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhCCCeEEEEec
Confidence 356788999999999987777543 567887775
No 321
>1cke_A CK, MSSA, protein (cytidine monophosphate kinase); nucleotide monophosphate kinase,, transferase; 1.75A {Escherichia coli} SCOP: c.37.1.1 PDB: 1kdo_A* 1kdp_A* 1kdr_A* 1kdt_A* 2cmk_A* 2fem_A 2feo_A*
Probab=66.75 E-value=4 Score=36.66 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=20.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+|+|+|||.++-.++..++
T Consensus 7 ~i~i~G~~GsGKSTl~~~L~~~~g 30 (227)
T 1cke_A 7 VITIDGPSGAGKGTLCKAMAEALQ 30 (227)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 567899999999999888887765
No 322
>1jjv_A Dephospho-COA kinase; P-loop nucleotide-binding fold, structure 2 function project, S2F, structural genomics, transferase; HET: ATP; 2.00A {Haemophilus influenzae} SCOP: c.37.1.1
Probab=66.74 E-value=4 Score=36.13 Aligned_cols=23 Identities=13% Similarity=0.001 Sum_probs=18.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+++|+|||.++-.++. ++
T Consensus 4 ~i~l~G~~GsGKST~~~~La~-lg 26 (206)
T 1jjv_A 4 IVGLTGGIGSGKTTIANLFTD-LG 26 (206)
T ss_dssp EEEEECSTTSCHHHHHHHHHT-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-CC
Confidence 356889999999998877765 44
No 323
>3uie_A Adenylyl-sulfate kinase 1, chloroplastic; rossmann fold, transferase-transferase complex; HET: ADX ANP; 1.79A {Arabidopsis thaliana} SCOP: c.37.1.0 PDB: 4fxp_A*
Probab=66.59 E-value=5.1 Score=35.36 Aligned_cols=24 Identities=17% Similarity=0.086 Sum_probs=19.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-..|.+|+|+|||.++-.++..+
T Consensus 26 ~~i~l~G~sGsGKSTl~~~La~~l 49 (200)
T 3uie_A 26 CVIWVTGLSGSGKSTLACALNQML 49 (200)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 466788999999999987777665
No 324
>3b85_A Phosphate starvation-inducible protein; PHOH2, ATPase, PFAM: PF02562, ST genomics, PSI-2, protein structure initiative; 2.35A {Corynebacterium glutamicum atcc 13032}
Probab=66.53 E-value=5.5 Score=35.76 Aligned_cols=38 Identities=21% Similarity=0.336 Sum_probs=25.5
Q ss_pred CCCcHH-HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 24 AQPRPY-QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 24 ~~Lr~y-Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
++++.| |..+++.+-.+. -..|.+|.|+|||...-.++
T Consensus 5 i~pk~~g~~~~l~~i~~Ge---~~~liG~nGsGKSTLl~~l~ 43 (208)
T 3b85_A 5 IRPKTLGQKHYVDAIDTNT---IVFGLGPAGSGKTYLAMAKA 43 (208)
T ss_dssp CCCCSHHHHHHHHHHHHCS---EEEEECCTTSSTTHHHHHHH
T ss_pred cccCCHhHHHHHHhccCCC---EEEEECCCCCCHHHHHHHHh
Confidence 344444 667788764433 67789999999998754433
No 325
>1zu4_A FTSY; GTPase, signal recognition particle, SRP, receptor, protein transport; 1.95A {Mycoplasma mycoides} PDB: 1zu5_A
Probab=66.29 E-value=5.2 Score=38.60 Aligned_cols=31 Identities=23% Similarity=0.084 Sum_probs=23.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
-..++++.|+|||.++..++.. .+++++++.
T Consensus 107 vI~ivG~~G~GKTT~~~~LA~~l~~~g~kVllid 140 (320)
T 1zu4_A 107 IFMLVGVNGTGKTTSLAKMANYYAELGYKVLIAA 140 (320)
T ss_dssp EEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4567799999999987766643 356777775
No 326
>1q57_A DNA primase/helicase; dntpase, DNA replication, transferase; HET: DNA; 3.45A {Enterobacteria phage T7} SCOP: c.37.1.11 e.13.1.2
Probab=66.00 E-value=8.8 Score=39.45 Aligned_cols=55 Identities=11% Similarity=-0.057 Sum_probs=37.0
Q ss_pred HHHHHHhCC-CCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcChhhHHHHHHHH
Q 010367 33 SLSKMFGNG-RARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATNAVSVDQWAFQF 88 (512)
Q Consensus 33 al~~~~~~~-~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~~~L~~Qw~~~~ 88 (512)
.|..++.+- ...-.+|.+++|+|||..++.++... +.+|+++..--. ..|....+
T Consensus 231 ~LD~~lgGl~~G~l~li~G~pG~GKT~lal~~a~~~a~~~g~~vl~~s~E~s-~~~l~~r~ 290 (503)
T 1q57_A 231 GINDKTLGARGGEVIMVTSGSGMVMSTFVRQQALQWGTAMGKKVGLAMLEES-VEETAEDL 290 (503)
T ss_dssp THHHHHCCCCTTCEEEEEESSCHHHHHHHHHHHHHHTTTSCCCEEEEESSSC-HHHHHHHH
T ss_pred hhhHhhcccCCCeEEEEeecCCCCchHHHHHHHHHHHHhcCCcEEEEeccCC-HHHHHHHH
Confidence 355555421 22457888999999999998887653 457888875443 56666554
No 327
>1uf9_A TT1252 protein; P-loop, nucleotide binding domain, structural genomics, riken structural genomics/proteomics initiative, RSGI; HET: ATP; 2.80A {Thermus thermophilus} SCOP: c.37.1.1
Probab=65.96 E-value=4.7 Score=35.36 Aligned_cols=23 Identities=26% Similarity=0.023 Sum_probs=19.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
....|.+++|+|||.++-.++..
T Consensus 9 ~~I~i~G~~GsGKST~~~~La~~ 31 (203)
T 1uf9_A 9 IIIGITGNIGSGKSTVAALLRSW 31 (203)
T ss_dssp EEEEEEECTTSCHHHHHHHHHHT
T ss_pred eEEEEECCCCCCHHHHHHHHHHC
Confidence 35678899999999999888776
No 328
>3m6a_A ATP-dependent protease LA 1; alpha, beta, ATP-binding, hydrolase, nucleotide-binding, Pro serine protease, stress response; HET: ADP; 3.40A {Bacillus subtilis} PDB: 1x37_A
Probab=65.82 E-value=6.5 Score=40.98 Aligned_cols=31 Identities=19% Similarity=0.198 Sum_probs=25.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
...++.+|+|+|||.++-.++..+..+...+
T Consensus 109 ~~vll~Gp~GtGKTtlar~ia~~l~~~~~~i 139 (543)
T 3m6a_A 109 PILCLAGPPGVGKTSLAKSIAKSLGRKFVRI 139 (543)
T ss_dssp CEEEEESSSSSSHHHHHHHHHHHHTCEEEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHHhcCCCeEEE
Confidence 4688999999999999988887776655444
No 329
>3ake_A Cytidylate kinase; CMP kinase, CMP complex, open conformation, nucleotide metab transferase; HET: C5P; 1.50A {Thermus thermophilus} PDB: 3akc_A* 3akd_A*
Probab=65.78 E-value=4.9 Score=35.43 Aligned_cols=24 Identities=29% Similarity=0.224 Sum_probs=20.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+++|+|||.++-.++..++
T Consensus 4 ~i~i~G~~GsGKst~~~~la~~lg 27 (208)
T 3ake_A 4 IVTIDGPSASGKSSVARRVAAALG 27 (208)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHhcC
Confidence 456889999999999988888776
No 330
>3ney_A 55 kDa erythrocyte membrane protein; structural genomics consortium, SGC, 55 kDa erythrocyte MEMB protein; 2.26A {Homo sapiens} SCOP: c.37.1.0
Probab=65.56 E-value=4.4 Score=36.09 Aligned_cols=25 Identities=12% Similarity=0.239 Sum_probs=20.3
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+-.+|++|+|+|||.+.-.++....
T Consensus 20 ~~ivl~GPSGaGKsTL~~~L~~~~~ 44 (197)
T 3ney_A 20 KTLVLIGASGVGRSHIKNALLSQNP 44 (197)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHCT
T ss_pred CEEEEECcCCCCHHHHHHHHHhhCC
Confidence 4678899999999998877776654
No 331
>4ag6_A VIRB4 ATPase, type IV secretory pathway VIRB4 components-like P; hydrolase, type IV secretion, conjugation; 2.35A {Thermoanaerobacter pseudethanolicus} PDB: 4ag5_A
Probab=65.26 E-value=6.1 Score=39.12 Aligned_cols=36 Identities=19% Similarity=0.167 Sum_probs=26.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEcChh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLATNAV 79 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P~~~ 79 (512)
.+.+|.+|+|+|||...-.++.. .+.+++|+=|...
T Consensus 36 ~~~~i~G~~G~GKs~~~~~~~~~~~~~~~~~~~~D~~~~ 74 (392)
T 4ag6_A 36 SNWTILAKPGAGKSFTAKMLLLREYMQGSRVIIIDPERE 74 (392)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEESSCC
T ss_pred CceEEEcCCCCCHHHHHHHHHHHHHHCCCEEEEEeCCcC
Confidence 38899999999999886555533 3467777777665
No 332
>1nlf_A Regulatory protein REPA; replicative DNA helicase structural changes, replication; 1.95A {Escherichia coli} SCOP: c.37.1.11 PDB: 1g8y_A 1olo_A
Probab=64.92 E-value=12 Score=34.92 Aligned_cols=46 Identities=24% Similarity=0.387 Sum_probs=29.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc-------------CCCEEEEEcChhhHHHHHHHHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI-------------KKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~-------------~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
.-.+|.+|.|+|||..+..++..+ ..+++++...-. ..+....+..
T Consensus 31 ~i~~i~G~~GsGKTtl~~~l~~~~~~g~~~~g~~~~~~~~v~~~~~e~~-~~~~~~r~~~ 89 (279)
T 1nlf_A 31 TVGALVSPGGAGKSMLALQLAAQIAGGPDLLEVGELPTGPVIYLPAEDP-PTAIHHRLHA 89 (279)
T ss_dssp SEEEEEESTTSSHHHHHHHHHHHHHTCCCTTCCCCCCCCCEEEEESSSC-HHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHHhcCCCcCCCccCCCccEEEEECCCC-HHHHHHHHHH
Confidence 467899999999999877666422 246777764433 3444444443
No 333
>2if2_A Dephospho-COA kinase; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative, northeast structural genomics consortium, NESG; 3.00A {Aquifex aeolicus}
Probab=64.64 E-value=4.9 Score=35.47 Aligned_cols=23 Identities=22% Similarity=0.029 Sum_probs=19.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+++|+|||.++-.++. ++
T Consensus 3 ~i~i~G~~GsGKSTl~~~L~~-~g 25 (204)
T 2if2_A 3 RIGLTGNIGCGKSTVAQMFRE-LG 25 (204)
T ss_dssp EEEEEECTTSSHHHHHHHHHH-TT
T ss_pred EEEEECCCCcCHHHHHHHHHH-CC
Confidence 467899999999999887777 54
No 334
>2plr_A DTMP kinase, probable thymidylate kinase; TMP-binding, ATP-binding, structural GEN NPPSFA; HET: 1PE PGE EPE PG4; 1.60A {Sulfolobus tokodaii}
Probab=64.63 E-value=4.1 Score=36.03 Aligned_cols=25 Identities=20% Similarity=-0.094 Sum_probs=20.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
..+|.+++|+|||.++-.++..++.
T Consensus 6 ~I~i~G~~GsGKsT~~~~L~~~l~~ 30 (213)
T 2plr_A 6 LIAFEGIDGSGKSSQATLLKDWIEL 30 (213)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHhh
Confidence 5678899999999998888776643
No 335
>2woo_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; 3.01A {Schizosaccharomyces pombe}
Probab=64.59 E-value=7.4 Score=37.60 Aligned_cols=39 Identities=18% Similarity=0.227 Sum_probs=26.5
Q ss_pred HHhCCCCcceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 37 MFGNGRARSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 37 ~~~~~~~~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
++..+..+-.++.+..|.|||.++..++.. .+++|++|-
T Consensus 13 ~~~~~~~~i~v~sgkGGvGKTTva~~LA~~lA~~G~rVllvD 54 (329)
T 2woo_A 13 LLEQTSLKWIFVGGKGGVGKTTTSCSLAIQMSKVRSSVLLIS 54 (329)
T ss_dssp HHHCTTCCEEEEECSSSSSHHHHHHHHHHHHHTSSSCEEEEE
T ss_pred HhcCCCCEEEEEeCCCCCcHHHHHHHHHHHHHHCCCeEEEEE
Confidence 333332234566788999999998777744 366888875
No 336
>2ga8_A Hypothetical 39.9 kDa protein; YFR007W, YFH7, unknown function; HET: CME; 1.77A {Saccharomyces cerevisiae} PDB: 2gaa_A*
Probab=64.50 E-value=4.9 Score=39.38 Aligned_cols=30 Identities=23% Similarity=0.190 Sum_probs=22.0
Q ss_pred hCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 39 GNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 39 ~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+...+.+|.+++|+|||.++-.++..++
T Consensus 20 ~~g~~~~i~l~G~~G~GKTTl~~~la~~l~ 49 (359)
T 2ga8_A 20 EDNYRVCVILVGSPGSGKSTIAEELCQIIN 49 (359)
T ss_dssp TTCSCEEEEEECCTTSSHHHHHHHHHHHHH
T ss_pred ccCCeeEEEEECCCCCcHHHHHHHHHHHhC
Confidence 334334588999999999999877765543
No 337
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=64.07 E-value=7.6 Score=48.28 Aligned_cols=57 Identities=12% Similarity=0.095 Sum_probs=35.1
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcCh--hhHHHHHHHHHHh
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNA--VSVDQWAFQFKLW 91 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~--~L~~Qw~~~~~~~ 91 (512)
.+..++..+ ++.++++|+|+|||.++-.++....+..++.++.+ .-..+..+.+...
T Consensus 1259 ll~~~l~~~--~~vLL~GPpGtGKT~la~~~l~~~~~~~~~~infsa~ts~~~~~~~i~~~ 1317 (2695)
T 4akg_A 1259 IFYDLLNSK--RGIILCGPPGSGKTMIMNNALRNSSLYDVVGINFSKDTTTEHILSALHRH 1317 (2695)
T ss_dssp HHHHHHHHT--CEEEEECSTTSSHHHHHHHHHHSCSSCEEEEEECCTTCCHHHHHHHHHHH
T ss_pred HHHHHHHCC--CeEEEECCCCCCHHHHHHHHHhcCCCCceEEEEeecCCCHHHHHHHHHHH
Confidence 344555555 49999999999999998777766544333333322 2234455555544
No 338
>3a00_A Guanylate kinase, GMP kinase; domain movement, dimerization, acetylation, ATP-binding, nucleotide-binding, phosphoprotein, transferase; 1.80A {Saccharomyces cerevisiae} PDB: 1ex6_A* 1ex7_A 1gky_A* 2zzz_A 3sqk_A 4f4j_A 2zzy_A
Probab=63.41 E-value=5.3 Score=34.83 Aligned_cols=23 Identities=26% Similarity=0.229 Sum_probs=18.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..|.+|.|+|||.+.-.++...
T Consensus 3 ii~l~GpsGaGKsTl~~~L~~~~ 25 (186)
T 3a00_A 3 PIVISGPSGTGKSTLLKKLFAEY 25 (186)
T ss_dssp CEEEESSSSSSHHHHHHHHHHHC
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 56789999999998876666544
No 339
>2gza_A Type IV secretion system protein VIRB11; ATPase, hydrolase; 2.60A {Brucella suis}
Probab=63.36 E-value=6.4 Score=38.64 Aligned_cols=39 Identities=13% Similarity=0.147 Sum_probs=25.6
Q ss_pred HHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEE
Q 010367 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (512)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~ 75 (512)
+..+..+ ...+|++|+|+|||...-.++.... ...+.+-
T Consensus 169 ~~~i~~G--~~i~ivG~sGsGKSTll~~l~~~~~~~~g~I~ie 209 (361)
T 2gza_A 169 RRAVQLE--RVIVVAGETGSGKTTLMKALMQEIPFDQRLITIE 209 (361)
T ss_dssp HHHHHTT--CCEEEEESSSSCHHHHHHHHHTTSCTTSCEEEEE
T ss_pred HHHHhcC--CEEEEECCCCCCHHHHHHHHHhcCCCCceEEEEC
Confidence 3334444 3889999999999987766665543 3344443
No 340
>3jvv_A Twitching mobility protein; hexameric P-loop ATPase, secretion ATPase, ATP-binding, FIMB nucleotide-binding, transport; HET: ACP CIT; 2.60A {Pseudomonas aeruginosa} PDB: 3jvu_A*
Probab=63.22 E-value=5.9 Score=38.85 Aligned_cols=33 Identities=18% Similarity=0.144 Sum_probs=21.8
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
.+..+....+ ...+|++|||+|||...-+++..
T Consensus 114 ~l~~l~~~~~-g~i~I~GptGSGKTTlL~~l~g~ 146 (356)
T 3jvv_A 114 VFKRVSDVPR-GLVLVTGPTGSGKSTTLAAMLDY 146 (356)
T ss_dssp HHHHHHHCSS-EEEEEECSTTSCHHHHHHHHHHH
T ss_pred HHHHHHhCCC-CEEEEECCCCCCHHHHHHHHHhc
Confidence 4555444321 36788999999999886655543
No 341
>3fdi_A Uncharacterized protein; cytidylate kinase like protein, PSI, MCSG, PRK04182 class ME structural genomics, protein structure initiative; 2.20A {Eubacterium ventriosum}
Probab=63.11 E-value=6.3 Score=35.07 Aligned_cols=28 Identities=21% Similarity=0.063 Sum_probs=23.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCL 72 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~L 72 (512)
-..|.+++|+|||.++-.++..++-+++
T Consensus 8 iI~i~g~~GsGk~ti~~~la~~lg~~~~ 35 (201)
T 3fdi_A 8 IIAIGREFGSGGHLVAKKLAEHYNIPLY 35 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHTTCCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHhCcCEE
Confidence 4667789999999999999999986644
No 342
>2eyu_A Twitching motility protein PILT; pilus retraction motor, C-terminal domain PILT, protein transport; 1.87A {Aquifex aeolicus}
Probab=62.43 E-value=4.3 Score=37.90 Aligned_cols=22 Identities=27% Similarity=0.191 Sum_probs=17.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAAC 65 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (512)
...+|++|+|+|||...-.++.
T Consensus 26 ~~v~i~Gp~GsGKSTll~~l~g 47 (261)
T 2eyu_A 26 GLILVTGPTGSGKSTTIASMID 47 (261)
T ss_dssp EEEEEECSTTCSHHHHHHHHHH
T ss_pred CEEEEECCCCccHHHHHHHHHH
Confidence 3678899999999987655553
No 343
>3iqw_A Tail-anchored protein targeting factor GET3; ATPase, Zn binding, protein transport; HET: ANP; 3.00A {Chaetomium thermophilum} PDB: 3iqx_A* 3ibg_A*
Probab=61.99 E-value=8.5 Score=37.32 Aligned_cols=42 Identities=24% Similarity=0.282 Sum_probs=28.9
Q ss_pred HHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc
Q 010367 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (512)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (512)
+.++.+...+-.++.+.-|.|||.++..++..+ +++||+|--
T Consensus 8 ~~~l~~~~~~i~~~sgkGGvGKTt~a~~lA~~la~~g~~vllid~ 52 (334)
T 3iqw_A 8 QSILDQRSLRWIFVGGKGGVGKTTTSCSLAIQLAKVRRSVLLLST 52 (334)
T ss_dssp HHHHHCTTCCEEEEECSTTSSHHHHHHHHHHHHTTSSSCEEEEEC
T ss_pred HHHhcCCCeEEEEEeCCCCccHHHHHHHHHHHHHhCCCcEEEEEC
Confidence 345555433456667889999999988777544 567877763
No 344
>4akg_A Glutathione S-transferase class-MU 26 kDa isozyme heavy chain cytoplasmic; motor protein, AAA+ protein, ASCE protein, P-loop ntpase; HET: ATP ADP; 3.30A {Schistosoma japonicum} PDB: 4ai6_A* 4akh_A* 4aki_A* 3qmz_A
Probab=61.96 E-value=10 Score=47.17 Aligned_cols=53 Identities=11% Similarity=0.147 Sum_probs=40.6
Q ss_pred CCCCcHHHHHHHHHHH---hCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC
Q 010367 23 HAQPRPYQEKSLSKMF---GNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN 77 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~---~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~ 77 (512)
...+.|.=.+++..++ ..+ ..+++.+|+|+|||.++-.++..++++++++--+
T Consensus 624 rlViTPltdr~~~tl~~Al~~~--~~~~l~GpaGtGKTe~vk~LA~~lg~~~v~~nc~ 679 (2695)
T 4akg_A 624 RLIYTPLLLIGFATLTDSLHQK--YGGCFFGPAGTGKTETVKAFGQNLGRVVVVFNCD 679 (2695)
T ss_dssp CCCCCHHHHHHHHHHHHHHHTT--CEEEEECCTTSCHHHHHHHHHHTTTCCCEEEETT
T ss_pred cceecHHHHHHHHHHHHHHHhC--CCCcccCCCCCCcHHHHHHHHHHhCCcEEEEECC
Confidence 3456676666666553 333 3889999999999999999999999988888644
No 345
>2j41_A Guanylate kinase; GMP, GMK, transferase, ATP-binding, nucleotide- binding; HET: 5GP; 1.9A {Staphylococcus aureus}
Probab=61.96 E-value=4.9 Score=35.36 Aligned_cols=23 Identities=22% Similarity=0.128 Sum_probs=19.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-.+|.+|+|+|||.++-.++...
T Consensus 8 ~i~l~G~~GsGKSTl~~~L~~~~ 30 (207)
T 2j41_A 8 LIVLSGPSGVGKGTVRKRIFEDP 30 (207)
T ss_dssp EEEEECSTTSCHHHHHHHHHHCT
T ss_pred EEEEECCCCCCHHHHHHHHHHhh
Confidence 56789999999998887776655
No 346
>1lvg_A Guanylate kinase, GMP kinase; transferase; HET: ADP 5GP; 2.10A {Mus musculus} SCOP: c.37.1.1
Probab=61.06 E-value=5.2 Score=35.42 Aligned_cols=24 Identities=29% Similarity=0.249 Sum_probs=18.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
+..+|++|+|+|||.+.-.++...
T Consensus 5 ~~i~lvGpsGaGKSTLl~~L~~~~ 28 (198)
T 1lvg_A 5 RPVVLSGPSGAGKSTLLKKLFQEH 28 (198)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhhC
Confidence 367899999999998866655443
No 347
>1cr0_A DNA primase/helicase; RECA-type protein fold, transferase; HET: DNA; 2.30A {Enterobacteria phage T7} SCOP: c.37.1.11 PDB: 1cr1_A* 1cr2_A* 1cr4_A* 1e0j_A* 1e0k_A*
Probab=60.93 E-value=7.8 Score=36.55 Aligned_cols=45 Identities=13% Similarity=-0.009 Sum_probs=29.3
Q ss_pred HHHHHHhC-CCCcceEEEcCCCCcHHHHHHHHHHhc----CCCEEEEEcC
Q 010367 33 SLSKMFGN-GRARSGIIVLPCGAGKSLVGVSAACRI----KKSCLCLATN 77 (512)
Q Consensus 33 al~~~~~~-~~~~~~il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~P~ 77 (512)
++..+... ....-.+|.+|+|+|||..+..++... +.+++++...
T Consensus 24 ~Ld~i~~~l~~G~~~~i~G~~G~GKTTl~~~ia~~~~~~~G~~v~~~~~e 73 (296)
T 1cr0_A 24 GINDKTLGARGGEVIMVTSGSGMGKSTFVRQQALQWGTAMGKKVGLAMLE 73 (296)
T ss_dssp THHHHHCSBCTTCEEEEEESTTSSHHHHHHHHHHHHHHTSCCCEEEEESS
T ss_pred HHHHHhcCCCCCeEEEEEeCCCCCHHHHHHHHHHHHHHHcCCeEEEEeCc
Confidence 35555422 222467889999999999877666433 3378777653
No 348
>3oiy_A Reverse gyrase helicase domain; topoisomerase, DNA supercoiling, archaea, isomeras; 2.35A {Thermotoga maritima} PDB: 3p4y_A 3p4x_A*
Probab=60.55 E-value=26 Score=34.50 Aligned_cols=74 Identities=12% Similarity=0.200 Sum_probs=54.9
Q ss_pred cCCCeEEEEecCHHHHHHHHHHh--------CCCceeCCCCHHHHHHHHHHhhCCCCccEEEEeC-CCc---ccccCccc
Q 010367 266 QRGDKIIVFADNLFALTEYAMKL--------RKPMIYGATSHVERTKILQAFKCSRDLNTIFLSK-VGD---NSIDIPEA 333 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L--------~~~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~-~~~---~GlDlp~~ 333 (512)
..+.++||.++++.-+..+++.+ .+..++|+.+..++...++.+..+ ..+|+|+|. .+. .-+++..+
T Consensus 62 ~~~~~~lil~Pt~~L~~q~~~~~~~~~~~~~~v~~~~g~~~~~~~~~~~~~l~~~-~~~Iiv~Tp~~l~~~l~~~~~~~~ 140 (414)
T 3oiy_A 62 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFSTQFVSKNREKLSQKRF 140 (414)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHHHCCSSCCEEECCTTSCHHHHHHHHHHHHHT-CCSEEEEEHHHHHHCHHHHTTCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHHHHccCCceEEEEECCCChhhHHHHHHHhhcC-CCCEEEECHHHHHHHHHHhccccc
Confidence 46789999999998877776655 233589999998888888888886 789999983 221 12556678
Q ss_pred cEEEEec
Q 010367 334 NVIIQIS 340 (512)
Q Consensus 334 ~~vI~~~ 340 (512)
++||+-.
T Consensus 141 ~~iViDE 147 (414)
T 3oiy_A 141 DFVFVDD 147 (414)
T ss_dssp SEEEESC
T ss_pred cEEEEeC
Confidence 8888743
No 349
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=60.55 E-value=44 Score=38.06 Aligned_cols=44 Identities=18% Similarity=0.119 Sum_probs=32.6
Q ss_pred CCCCcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHHHh
Q 010367 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
.+.=|+-..+.+..++.. +..+-..|+++-|.|||..+..++..
T Consensus 125 ~~vgR~~~~~~l~~~l~~~~~~~~~v~i~G~gG~GKTtLa~~~~~~ 170 (1249)
T 3sfz_A 125 IFVTRKKLVHAIQQKLWKLNGEPGWVTIYGMAGCGKSVLAAEAVRD 170 (1249)
T ss_dssp SCCCCHHHHHHHHHHHHTTTTSCEEEEEECSTTSSHHHHHHHHTCC
T ss_pred eeccHHHHHHHHHHHHhhccCCCCEEEEEeCCCCCHHHHHHHHhcC
Confidence 366788888888877742 23345678999999999999877643
No 350
>3tr0_A Guanylate kinase, GMP kinase; purines, pyrimidines, nucleosides, nucleotides, transferase; HET: 5GP; 1.85A {Coxiella burnetii}
Probab=60.51 E-value=5 Score=35.29 Aligned_cols=23 Identities=30% Similarity=0.296 Sum_probs=18.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..|.+|.|+|||.++-.++...
T Consensus 9 ii~l~Gp~GsGKSTl~~~L~~~~ 31 (205)
T 3tr0_A 9 LFIISAPSGAGKTSLVRALVKAL 31 (205)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHS
T ss_pred EEEEECcCCCCHHHHHHHHHhhC
Confidence 56788999999998877666554
No 351
>1vht_A Dephospho-COA kinase; structural genomics, transferase; HET: BA3; 1.59A {Escherichia coli} SCOP: c.37.1.1 PDB: 1vhl_A* 1viy_A 1t3h_A 1n3b_A
Probab=60.48 E-value=6.6 Score=35.09 Aligned_cols=23 Identities=26% Similarity=0.141 Sum_probs=18.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+++|+|||.++-.++. ++
T Consensus 6 ~I~i~G~~GSGKST~~~~L~~-lg 28 (218)
T 1vht_A 6 IVALTGGIGSGKSTVANAFAD-LG 28 (218)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TT
T ss_pred EEEEECCCCCCHHHHHHHHHH-cC
Confidence 567889999999998877765 44
No 352
>1m7g_A Adenylylsulfate kinase; APS kinase, transferase, sulfate Met nucleotide 2 kinase; HET: AV2 ADX ADP; 1.43A {Penicillium chrysogenum} SCOP: c.37.1.4 PDB: 1d6j_A* 1m7h_A* 3cr7_A*
Probab=60.30 E-value=9.1 Score=34.01 Aligned_cols=25 Identities=16% Similarity=0.102 Sum_probs=20.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...++.+++|+|||.++-.+...+.
T Consensus 26 ~~i~~~G~~GsGKsT~~~~l~~~l~ 50 (211)
T 1m7g_A 26 LTIWLTGLSASGKSTLAVELEHQLV 50 (211)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHHHhc
Confidence 4667889999999999887776553
No 353
>3r20_A Cytidylate kinase; structural genomics, seattle structural genomics center for infectious disease, ssgcid, ADP, DCMP, D transferase; 2.00A {Mycobacterium smegmatis} SCOP: c.37.1.0 PDB: 3r8c_A 4die_A*
Probab=60.17 E-value=6.4 Score=36.06 Aligned_cols=24 Identities=29% Similarity=0.255 Sum_probs=21.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+|+|+|||.++-.++..++
T Consensus 11 ~i~i~G~~GsGKsTla~~la~~lg 34 (233)
T 3r20_A 11 VVAVDGPAGTGKSSVSRGLARALG 34 (233)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 578889999999999988887776
No 354
>2v3c_C SRP54, signal recognition 54 kDa protein; nucleotide-binding, signal recognition particle, GTP-binding, RNA-binding; 2.50A {Methanocaldococcus jannaschii} PDB: 3ndb_B
Probab=60.12 E-value=4.9 Score=40.57 Aligned_cols=32 Identities=22% Similarity=0.109 Sum_probs=24.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
...++++++|+|||.++..++..+ +++++++.
T Consensus 100 ~vI~ivG~~GvGKTTla~~La~~l~~~G~kVllv~ 134 (432)
T 2v3c_C 100 NVILLVGIQGSGKTTTAAKLARYIQKRGLKPALIA 134 (432)
T ss_dssp CCEEEECCSSSSTTHHHHHHHHHHHHHHCCEEEEC
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 357788999999999987777544 46777765
No 355
>2wwf_A Thymidilate kinase, putative; transferase, malaria; HET: TMP ADP; 1.89A {Plasmodium falciparum} PDB: 2wwg_A* 2wwh_A* 2wwi_A*
Probab=60.07 E-value=5.7 Score=35.14 Aligned_cols=24 Identities=13% Similarity=-0.129 Sum_probs=19.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
...+|.+++|+|||.++-.++..+
T Consensus 11 ~~I~l~G~~GsGKST~~~~L~~~l 34 (212)
T 2wwf_A 11 KFIVFEGLDRSGKSTQSKLLVEYL 34 (212)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred CEEEEEcCCCCCHHHHHHHHHHHH
Confidence 357888999999999988877654
No 356
>3cio_A ETK, tyrosine-protein kinase ETK; WZC, escherichia coli tyrosine kinase domain, signaling protein, transferase, inner membrane, membrane; 2.50A {Escherichia coli}
Probab=59.79 E-value=12 Score=35.58 Aligned_cols=31 Identities=19% Similarity=0.191 Sum_probs=21.7
Q ss_pred ceEEEcC-CCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 45 SGIIVLP-CGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~-tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
...+..+ .|.|||.+++.++.. .+++||+|=
T Consensus 106 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 140 (299)
T 3cio_A 106 ILMITGATPDSGKTFVSSTLAAVIAQSDQKVLFID 140 (299)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCChHHHHHHHHHHHHhCCCcEEEEE
Confidence 4445554 699999998777643 467888774
No 357
>1rz3_A Hypothetical protein rbstp0775; MCSG, structural genomics, PSI, protein structure initiative; 1.90A {Geobacillus stearothermophilus} SCOP: c.37.1.6
Probab=59.44 E-value=8.5 Score=33.96 Aligned_cols=30 Identities=13% Similarity=-0.057 Sum_probs=21.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
-..|.++.|+|||.++-.++..+ +.++.++
T Consensus 24 ~i~i~G~~GsGKstl~~~l~~~~~~~~~~v~~~ 56 (201)
T 1rz3_A 24 VLGIDGLSRSGKTTLANQLSQTLREQGISVCVF 56 (201)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCeEEEe
Confidence 46677999999999877666543 4455554
No 358
>3nwn_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens}
Probab=59.26 E-value=7.1 Score=38.31 Aligned_cols=18 Identities=22% Similarity=0.206 Sum_probs=13.5
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 107 tifAYGQTGSGKTyTM~G 124 (359)
T 3nwn_A 107 TIMCYGQTGAGKTYTMMG 124 (359)
T ss_dssp EEEEEESTTSSHHHHHTB
T ss_pred EEEEeCCCCCCccEEeCC
Confidence 344458999999998753
No 359
>2h92_A Cytidylate kinase; rossmann fold, transferase; HET: C5P PG4; 2.30A {Staphylococcus aureus}
Probab=59.04 E-value=8.3 Score=34.35 Aligned_cols=25 Identities=24% Similarity=0.255 Sum_probs=21.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...|.+++|+|||.++-.++..++-
T Consensus 5 ~i~i~G~~gsGkst~~~~l~~~~g~ 29 (219)
T 2h92_A 5 NIALDGPAAAGKSTIAKRVASELSM 29 (219)
T ss_dssp CEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5788999999999999888887763
No 360
>1nn5_A Similar to deoxythymidylate kinase (thymidylate K; P-loop, D4TMP, transferase; HET: 2DT ANP; 1.50A {Homo sapiens} SCOP: c.37.1.1 PDB: 1e2e_A* 1e2d_A* 1e2g_A* 1e2q_A* 1e99_A* 1e9a_A* 1e9b_A* 1nmx_A* 1nmz_A* 1nn0_A* 1nn1_A* 1e2f_A* 1nn3_A* 2xx3_A* 1e9c_A* 1e9d_A* 1e9e_A* 1e98_A* 1nmy_A* 1e9f_A*
Probab=59.01 E-value=6.2 Score=34.95 Aligned_cols=24 Identities=17% Similarity=-0.072 Sum_probs=19.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
...+|.+++|+|||.++-.++..+
T Consensus 10 ~~I~l~G~~GsGKsT~~~~L~~~l 33 (215)
T 1nn5_A 10 ALIVLEGVDRAGKSTQSRKLVEAL 33 (215)
T ss_dssp CEEEEEESTTSSHHHHHHHHHHHH
T ss_pred cEEEEECCCCCCHHHHHHHHHHHH
Confidence 367888999999999988877654
No 361
>1byi_A Dethiobiotin synthase; biotin synthesis, cyclo-ligase, ligase; 0.97A {Escherichia coli} SCOP: c.37.1.10 PDB: 1bs1_A* 1a82_A 1dad_A* 1dae_A* 1daf_A* 1dag_A* 1dah_A* 1dai_A* 1dak_A* 1dam_A* 1dbs_A 1dts_A
Probab=58.65 E-value=9.1 Score=34.18 Aligned_cols=30 Identities=7% Similarity=-0.029 Sum_probs=21.6
Q ss_pred EEEcCCCCcHHHHHHHHHHh---cCCCEEEEEc
Q 010367 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P 76 (512)
+.....|.|||.+++.++.. .+++|+++=|
T Consensus 6 v~s~kgGvGKTt~a~nLa~~la~~G~rVll~dp 38 (224)
T 1byi_A 6 VTGTDTEVGKTVASCALLQAAKAAGYRTAGYKP 38 (224)
T ss_dssp EEESSTTSCHHHHHHHHHHHHHHTTCCEEEECS
T ss_pred EEECCCCCCHHHHHHHHHHHHHHCCCCEEEEcc
Confidence 33446899999998877744 4678888644
No 362
>1q3t_A Cytidylate kinase; nucleotide monophosphate kinase, CMP kinase, transferase; NMR {Streptococcus pneumoniae} SCOP: c.37.1.1
Probab=57.97 E-value=8.1 Score=35.07 Aligned_cols=25 Identities=28% Similarity=0.113 Sum_probs=21.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
....|.+++|+|||.++-.++..++
T Consensus 17 ~~i~i~G~~gsGKst~~~~l~~~lg 41 (236)
T 1q3t_A 17 IQIAIDGPASSGKSTVAKIIAKDFG 41 (236)
T ss_dssp CEEEEECSSCSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHcC
Confidence 3567889999999999988887776
No 363
>4e22_A Cytidylate kinase; P-loop, CMP/ATP binding, transferase; 2.32A {Yersinia pseudotuberculosis}
Probab=57.85 E-value=7.9 Score=35.72 Aligned_cols=25 Identities=24% Similarity=0.170 Sum_probs=21.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
...|.+|+|+|||.++-.++..++-
T Consensus 29 ~I~I~G~~GsGKSTl~k~La~~Lg~ 53 (252)
T 4e22_A 29 VITVDGPSGAGKGTLCKALAESLNW 53 (252)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHTTC
T ss_pred EEEEECCCCCCHHHHHHHHHHhcCC
Confidence 5778899999999999888887763
No 364
>3b9q_A Chloroplast SRP receptor homolog, alpha subunit CPFTSY; protein translocation, GTP-binding, nucleotide-binding, protein transport; 1.75A {Arabidopsis thaliana}
Probab=57.26 E-value=9.3 Score=36.43 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=22.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
-..+++|+|+|||.+.-.++..+ ++++++..
T Consensus 102 vi~lvG~nGsGKTTll~~Lag~l~~~~g~V~l~g 135 (302)
T 3b9q_A 102 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 135 (302)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCCCHHHHHHHHHHHHHHcCCeEEEEe
Confidence 45688999999998876665433 46676664
No 365
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=57.22 E-value=11 Score=47.51 Aligned_cols=57 Identities=18% Similarity=0.132 Sum_probs=35.3
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcC--hhhHHHHHHHHHH
Q 010367 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATN--AVSVDQWAFQFKL 90 (512)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~--~~L~~Qw~~~~~~ 90 (512)
..+..++.++ ++.++++|||+|||.....++..+.+..++.++- .....+....+..
T Consensus 1295 ~ll~~ll~~~--~pvLL~GptGtGKT~li~~~L~~l~~~~~~~infS~~Tta~~l~~~~e~ 1353 (3245)
T 3vkg_A 1295 DVLHAWLSEH--RPLILCGPPGSGKTMTLTSTLRAFPDFEVVSLNFSSATTPELLLKTFDH 1353 (3245)
T ss_dssp HHHHHHHHTT--CCCEEESSTTSSHHHHHHHHGGGCTTEEEEEECCCTTCCHHHHHHHHHH
T ss_pred HHHHHHHHCC--CcEEEECCCCCCHHHHHHHHHHhCCCCceEEEEeeCCCCHHHHHHHHhh
Confidence 4455566666 4999999999999987766666664433333332 2234445555543
No 366
>2oze_A ORF delta'; para, walker type atpases, DNA segregation, PSM19035, plasmid, DNA binding protein; HET: AGS EPE; 1.83A {Streptococcus pyogenes}
Probab=57.07 E-value=13 Score=35.03 Aligned_cols=44 Identities=20% Similarity=0.295 Sum_probs=26.2
Q ss_pred HHHHHHHHHhCCCCcceEEE---cCCCCcHHHHHHHHHHh---cCCCEEEE
Q 010367 30 QEKSLSKMFGNGRARSGIIV---LPCGAGKSLVGVSAACR---IKKSCLCL 74 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~---~~tG~GKTl~~i~~i~~---~~~~~Lvl 74 (512)
|...+..++.... +...++ ..-|.|||.+++.++.. .+++||+|
T Consensus 22 ~~~~~~r~~~~~~-~~i~v~~~s~KGGvGKTT~a~nLA~~la~~G~rVlli 71 (298)
T 2oze_A 22 ILEELRRILSNKN-EAIVILNNYFKGGVGKSKLSTMFAYLTDKLNLKVLMI 71 (298)
T ss_dssp HHHHHHHHHHHHC-SCEEEEECCSSSSSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred HHHHHHHHhcCCC-cEEEEEeccCCCCchHHHHHHHHHHHHHhCCCeEEEE
Confidence 3444444444322 233344 37799999998777744 35678775
No 367
>3asz_A Uridine kinase; cytidine phosphorylation, transferase; HET: C5P; 2.25A {Thermus thermophilus} PDB: 3asy_A*
Probab=57.04 E-value=8.1 Score=34.17 Aligned_cols=24 Identities=17% Similarity=0.025 Sum_probs=18.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
-..|.+|.|+|||.++-.++..++
T Consensus 8 ~i~i~G~~GsGKSTl~~~l~~~~~ 31 (211)
T 3asz_A 8 VIGIAGGTASGKTTLAQALARTLG 31 (211)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHG
T ss_pred EEEEECCCCCCHHHHHHHHHHHhC
Confidence 456889999999988766665544
No 368
>3auy_A DNA double-strand break repair RAD50 ATPase; DNA repair, ABC transporter ATPase domain-like; HET: DNA ADP; 2.70A {Methanocaldococcus jannaschii} PDB: 3aux_A* 3av0_B*
Probab=56.96 E-value=5.7 Score=39.13 Aligned_cols=16 Identities=31% Similarity=0.210 Sum_probs=13.9
Q ss_pred ceEEEcCCCCcHHHHH
Q 010367 45 SGIIVLPCGAGKSLVG 60 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (512)
-.+|.+|||+|||.+.
T Consensus 27 l~vi~G~NGaGKT~il 42 (371)
T 3auy_A 27 IVAIIGENGSGKSSIF 42 (371)
T ss_dssp EEEEEECTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 5689999999999873
No 369
>1rj9_A FTSY, signal recognition protein; SRP-GTPase domain, heterodimer, nucleotide twinning, protein complex, protein transport; HET: GCP; 1.90A {Thermus aquaticus} SCOP: a.24.13.1 c.37.1.10 PDB: 2q9c_A* 2q9b_A* 2q9a_A* 1okk_D* 2xkv_D 2iyl_D* 2cnw_D* 2j7p_D*
Probab=56.84 E-value=11 Score=35.89 Aligned_cols=32 Identities=22% Similarity=0.146 Sum_probs=22.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.-..+++|.|+|||.+.-.++..+ ++++++..
T Consensus 103 ~vi~lvG~nGsGKTTll~~Lagll~~~~g~V~l~g 137 (304)
T 1rj9_A 103 RVVLVVGVNGVGKTTTIAKLGRYYQNLGKKVMFCA 137 (304)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHTTTCCEEEEC
T ss_pred eEEEEECCCCCcHHHHHHHHHHHHHhcCCEEEEEe
Confidence 356788999999998876665433 45666654
No 370
>1xjc_A MOBB protein homolog; structural genomics, midwest center for structural GEN PSI, protein structure initiative, MCSG; 2.10A {Geobacillus stearothermophilus} SCOP: c.37.1.10
Probab=56.80 E-value=11 Score=32.53 Aligned_cols=31 Identities=10% Similarity=-0.182 Sum_probs=22.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
-..++++.|+|||.....++..+ +.++-++.
T Consensus 6 ~i~i~G~sGsGKTTl~~~L~~~l~~~g~~v~~ik 39 (169)
T 1xjc_A 6 VWQVVGYKHSGKTTLMEKWVAAAVREGWRVGTVK 39 (169)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHhhHhcCCeeeEEE
Confidence 46788999999999887776543 34666665
No 371
>1uj2_A Uridine-cytidine kinase 2; alpha/beta mononucleotide-binding HOLD, transferase; HET: C5P ADP; 1.80A {Homo sapiens} SCOP: c.37.1.6 PDB: 1uei_A* 1uej_A* 1udw_A 1ufq_A* 1xrj_A*
Probab=56.49 E-value=7.4 Score=35.79 Aligned_cols=26 Identities=15% Similarity=-0.096 Sum_probs=21.1
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
....|.+++|+|||.++-.++..++.
T Consensus 23 ~iI~I~G~~GSGKST~a~~L~~~lg~ 48 (252)
T 1uj2_A 23 FLIGVSGGTASGKSSVCAKIVQLLGQ 48 (252)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHTTG
T ss_pred EEEEEECCCCCCHHHHHHHHHHHhhh
Confidence 35678899999999999888876653
No 372
>3dc4_A Kinesin-like protein NOD; catalytic domain, ATPase, microtubule, ADP, nucleotide-binding protein, ATP-binding, coiled coil, motor protein; HET: ADP; 1.90A {Drosophila melanogaster} PDB: 3dcb_A* 3dco_N* 3pxn_A*
Probab=56.36 E-value=8.9 Score=37.35 Aligned_cols=16 Identities=25% Similarity=0.262 Sum_probs=12.7
Q ss_pred ceEEEcCCCCcHHHHH
Q 010367 45 SGIIVLPCGAGKSLVG 60 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (512)
..+..+.||+|||.+.
T Consensus 97 tifAYGQTGSGKTyTM 112 (344)
T 3dc4_A 97 TALAYGQTGTGKSYSM 112 (344)
T ss_dssp EEEEESSTTSSHHHHH
T ss_pred EEEEecCCCCCCCeEE
Confidence 3344589999999996
No 373
>1lkx_A Myosin IE heavy chain; myosin motor domain, lever ARM, converter domain, contractIle protein; HET: ADP; 3.00A {Dictyostelium discoideum} SCOP: c.37.1.9
Probab=56.22 E-value=9.2 Score=41.02 Aligned_cols=34 Identities=21% Similarity=0.177 Sum_probs=26.0
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
..|+..|+..+...+.||.++.|+|||..+=.++
T Consensus 82 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 115 (697)
T 1lkx_A 82 NDAYRSMRQSQENQCVIISGESGAGKTEASKKIM 115 (697)
T ss_dssp HHHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 3667777776655688999999999998865444
No 374
>2woj_A ATPase GET3; tail-anchored, membrane protein, targeting factor, endoplasmic reticulum, TRC40, ATP-binding, golgi apparatus; HET: ADP; 1.99A {Saccharomyces cerevisiae} PDB: 3h84_A 3zs8_A 3zs9_A* 3sja_A 3sjb_A 3sjc_A 3sjd_A* 3idq_A 3a36_A 3a37_A*
Probab=56.19 E-value=11 Score=36.81 Aligned_cols=42 Identities=19% Similarity=0.174 Sum_probs=27.3
Q ss_pred HHHHhCCCCcceEEEcCCCCcHHHHHHHHH---H--hcCCCEEEEEc
Q 010367 35 SKMFGNGRARSGIIVLPCGAGKSLVGVSAA---C--RIKKSCLCLAT 76 (512)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i~~i---~--~~~~~~Lvl~P 76 (512)
..++......-.+..+-.|.|||.++..++ + ..+++||+|-.
T Consensus 10 ~~l~~~~~~~i~v~sgKGGvGKTTvaanLA~~lA~~~~G~rVLLvD~ 56 (354)
T 2woj_A 10 HSLITSTTHKWIFVGGKGGVGKTTSSCSIAIQMALSQPNKQFLLIST 56 (354)
T ss_dssp HHHHTCSSCCEEEEEESTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 344443322345666788999999987665 3 44578888864
No 375
>3e70_C DPA, signal recognition particle receptor; FTSY, SRP-GTPase, protein-targeting, transport protein; HET: GDP; 1.97A {Pyrococcus furiosus} PDB: 3dmd_B 3dm9_B*
Probab=55.99 E-value=16 Score=35.31 Aligned_cols=32 Identities=22% Similarity=0.037 Sum_probs=22.4
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.-..+++|.|+|||.+.-.++..+ ++++++..
T Consensus 130 ~vi~lvG~nGaGKTTll~~Lag~l~~~~g~V~l~g 164 (328)
T 3e70_C 130 YVIMFVGFNGSGKTTTIAKLANWLKNHGFSVVIAA 164 (328)
T ss_dssp EEEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCCCHHHHHHHHHHHHHhcCCEEEEEe
Confidence 456788999999998866555433 45666654
No 376
>1ry6_A Internal kinesin; kinesin motor domain, nucleotide-free, transport protein; 1.60A {Plasmodium falciparum} SCOP: c.37.1.9
Probab=55.82 E-value=7.2 Score=38.25 Aligned_cols=17 Identities=18% Similarity=0.192 Sum_probs=13.8
Q ss_pred eEEEcCCCCcHHHHHHH
Q 010367 46 GIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~ 62 (512)
.+..+.||+|||.+...
T Consensus 88 ifAYGqTGSGKTyTM~G 104 (360)
T 1ry6_A 88 CFAYGQTGSGKTYTMLG 104 (360)
T ss_dssp EEEECCTTSSHHHHHHB
T ss_pred EEeeCCCCCCCCEEEec
Confidence 35669999999998764
No 377
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=55.80 E-value=22 Score=44.95 Aligned_cols=54 Identities=13% Similarity=0.207 Sum_probs=40.2
Q ss_pred CCcHHHHHHHHHH---HhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhh
Q 010367 25 QPRPYQEKSLSKM---FGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVS 80 (512)
Q Consensus 25 ~Lr~yQ~~al~~~---~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L 80 (512)
.+.|-=.+++-.+ +..+ .+|.+.+|.|+|||-++-.++..++++++|+..+..+
T Consensus 585 ViTPLTdrcy~tl~~Al~~~--~gg~~~GPaGtGKTet~k~La~~lgr~~~vfnC~~~~ 641 (3245)
T 3vkg_A 585 VQTPLTDRCYLTLTQALESR--MGGNPFGPAGTGKTETVKALGSQLGRFVLVFCCDEGF 641 (3245)
T ss_dssp CCCHHHHHHHHHHHHHHHTT--CEEEEECSTTSSHHHHHHHHHHHTTCCEEEEECSSCC
T ss_pred cCChHHHHHHHHHHHHHHhc--CCCCCCCCCCCCHHHHHHHHHHHhCCeEEEEeCCCCC
Confidence 4455545555443 4433 3788999999999999999999999999988765544
No 378
>2bbw_A Adenylate kinase 4, AK4; nucleotide kinase, nucleotide binding, human, structura genomics, structural genomics consortium, SGC, transferase; HET: GP5; 2.05A {Homo sapiens} PDB: 2ar7_A* 3ndp_A
Probab=55.78 E-value=7.5 Score=35.53 Aligned_cols=25 Identities=28% Similarity=0.306 Sum_probs=20.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...+|.+|.|+|||.++-.++..++
T Consensus 28 ~~i~l~G~~GsGKSTl~k~La~~lg 52 (246)
T 2bbw_A 28 LRAVILGPPGSGKGTVCQRIAQNFG 52 (246)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHC
T ss_pred cEEEEECCCCCCHHHHHHHHHHHhC
Confidence 3678999999999999888876664
No 379
>2ewv_A Twitching motility protein PILT; pilus retraction motor, ATPase, hexameric PILT, protein TRAN; HET: ADP; 2.80A {Aquifex aeolicus} PDB: 2eww_A* 2gsz_A*
Probab=55.65 E-value=6.4 Score=38.83 Aligned_cols=23 Identities=26% Similarity=0.157 Sum_probs=17.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
...+|++|+|+|||.+.-.++..
T Consensus 137 ~~i~ivG~~GsGKTTll~~l~~~ 159 (372)
T 2ewv_A 137 GLILVTGPTGSGKSTTIASMIDY 159 (372)
T ss_dssp EEEEEECSSSSSHHHHHHHHHHH
T ss_pred CEEEEECCCCCCHHHHHHHHHhh
Confidence 36788999999999886665543
No 380
>3tqf_A HPR(Ser) kinase; transferase, hydrolase; 2.80A {Coxiella burnetii}
Probab=55.56 E-value=7.4 Score=33.92 Aligned_cols=23 Identities=22% Similarity=0.164 Sum_probs=20.2
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
+..++.++.|+|||.+++.++.+
T Consensus 17 ~gvli~G~SGaGKStlal~L~~r 39 (181)
T 3tqf_A 17 MGVLITGEANIGKSELSLALIDR 39 (181)
T ss_dssp EEEEEEESSSSSHHHHHHHHHHT
T ss_pred EEEEEEcCCCCCHHHHHHHHHHc
Confidence 46789999999999999988874
No 381
>2v9p_A Replication protein E1; AAA+ molecular motor, DNA replication, DNA translocation, nucleotide-binding, DNA-binding; 3.00A {Bovine papillomavirus type 1} PDB: 2gxa_A*
Probab=55.28 E-value=5.1 Score=38.37 Aligned_cols=32 Identities=25% Similarity=0.208 Sum_probs=23.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
....|++|.|+|||...-.++..+.+.+++.+
T Consensus 127 e~vaIvGpsGsGKSTLl~lL~gl~~G~I~~~v 158 (305)
T 2v9p_A 127 NCLAFIGPPNTGKSMLCNSLIHFLGGSVLSFA 158 (305)
T ss_dssp SEEEEECSSSSSHHHHHHHHHHHHTCEEECGG
T ss_pred CEEEEECCCCCcHHHHHHHHhhhcCceEEEEe
Confidence 46789999999999887766655566665433
No 382
>1svm_A Large T antigen; AAA+ fold, viral protein; HET: ATP; 1.94A {Simian virus 40} SCOP: c.37.1.20 PDB: 1svl_A* 1svo_A 1n25_A 2h1l_A
Probab=55.28 E-value=14 Score=36.35 Aligned_cols=32 Identities=16% Similarity=0.126 Sum_probs=24.9
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lv 73 (512)
.++..+|.+|.|+|||..+-.++....+.++.
T Consensus 168 ~~~~i~l~G~~GsGKSTl~~~l~~~~~g~~~~ 199 (377)
T 1svm_A 168 KKRYWLFKGPIDSGKTTLAAALLELCGGKALN 199 (377)
T ss_dssp TCCEEEEECSTTSSHHHHHHHHHHHHCCEEEC
T ss_pred CCCEEEEECCCCCCHHHHHHHHHhhcCCcEEE
Confidence 33477889999999999888777766666555
No 383
>3io3_A DEHA2D07832P; chaperone, membrane traffic, ATPase; HET: ADP; 1.80A {Debaryomyces hansenii}
Probab=55.22 E-value=13 Score=36.31 Aligned_cols=43 Identities=19% Similarity=0.192 Sum_probs=28.9
Q ss_pred HHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH-----hcCCCEEEEEc
Q 010367 34 LSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC-----RIKKSCLCLAT 76 (512)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~-----~~~~~~Lvl~P 76 (512)
+..++.+...+-.++.+.-|.|||.++..++. ..+++||+|--
T Consensus 9 L~~~l~~~~~~i~~~~gkGGvGKTt~a~~lA~~la~~~~g~~vllid~ 56 (348)
T 3io3_A 9 LESIVQHDSLKWIFVGGKGGVGKTTTSSSVAVQLALAQPNEQFLLIST 56 (348)
T ss_dssp SHHHHTCTTCSEEEEECSTTSSHHHHHHHHHHHHHHHCTTSCEEEEEC
T ss_pred HHHHhcCCCcEEEEEeCCCCCcHHHHHHHHHHHHHHhcCCCeEEEEEC
Confidence 34455554334566678889999999876663 44568888764
No 384
>2hf9_A Probable hydrogenase nickel incorporation protein HYPB; alpha and beta protein; HET: GSP; 1.90A {Methanocaldococcus jannaschii} PDB: 2hf8_A*
Probab=55.18 E-value=13 Score=33.09 Aligned_cols=38 Identities=13% Similarity=0.060 Sum_probs=27.5
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhc
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
|.+.++..+...+....+++++.|+|||.....++...
T Consensus 25 ~a~~~r~~~~~~~~~~i~ivG~~gvGKTtl~~~l~~~~ 62 (226)
T 2hf9_A 25 LADKNRKLLNKHGVVAFDFMGAIGSGKTLLIEKLIDNL 62 (226)
T ss_dssp HHHHHHHHHHHTTCEEEEEEESTTSSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCeEEEEEcCCCCCHHHHHHHHHHHh
Confidence 45555555554444578899999999998887777654
No 385
>3zq6_A Putative arsenical pump-driving ATPase; tail-anchored, membrane protein; HET: ADP; 2.11A {Methanothermobacter thermautotrophicusorganism_taxid}
Probab=54.94 E-value=10 Score=36.44 Aligned_cols=32 Identities=25% Similarity=0.212 Sum_probs=24.1
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEEc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLAT 76 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~P 76 (512)
-.+..+..|.|||.++..++.. .+++||+|-.
T Consensus 16 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD~ 50 (324)
T 3zq6_A 16 FVFIGGKGGVGKTTISAATALWMARSGKKTLVIST 50 (324)
T ss_dssp EEEEEESTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EEEEeCCCCchHHHHHHHHHHHHHHCCCcEEEEeC
Confidence 4466688999999998777643 4678888763
No 386
>2ehv_A Hypothetical protein PH0186; KAIC, RECA ATPase, unknown function; HET: ADP; 2.07A {Pyrococcus horikoshii} PDB: 2zts_A*
Probab=54.73 E-value=13 Score=33.71 Aligned_cols=35 Identities=9% Similarity=0.110 Sum_probs=24.8
Q ss_pred cceEEEcCCCCcHHHHHHHHH--H--hcCCCEEEEEcCh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAA--C--RIKKSCLCLATNA 78 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i--~--~~~~~~Lvl~P~~ 78 (512)
.-..|.+|.|+|||...-.++ . .....++++....
T Consensus 31 ~~~~l~GpnGsGKSTLl~~i~~~~~~~~~~~~~~~~~~~ 69 (251)
T 2ehv_A 31 TTVLLTGGTGTGKTTFAAQFIYKGAEEYGEPGVFVTLEE 69 (251)
T ss_dssp CEEEEECCTTSSHHHHHHHHHHHHHHHHCCCEEEEESSS
T ss_pred cEEEEEeCCCCCHHHHHHHHHHHHHHhCCCeEEEEEccC
Confidence 467889999999998876555 2 3456677776543
No 387
>1bg2_A Kinesin; motor protein, ATPase, microtubule associated; HET: ADP; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 2p4n_K* 1mkj_A* 2kin_A* 3kin_A*
Probab=54.73 E-value=9.8 Score=36.74 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=13.8
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 80 tifAYGqTGSGKTyTm~G 97 (325)
T 1bg2_A 80 TIFAYGQTSSGKTHTMEG 97 (325)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred EEEEECCCCCCCceEecc
Confidence 344458999999999753
No 388
>2pt7_A CAG-ALFA; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori} SCOP: c.37.1.11 PDB: 1nly_A* 1nlz_A 1opx_A* 1g6o_A
Probab=54.61 E-value=7.7 Score=37.55 Aligned_cols=42 Identities=17% Similarity=0.169 Sum_probs=26.1
Q ss_pred HHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEEc
Q 010367 33 SLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLAT 76 (512)
Q Consensus 33 al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~P 76 (512)
.++..+..+ ....|++|+|+|||...-.++..+. ...+.+-.
T Consensus 163 ~l~~~i~~g--~~v~i~G~~GsGKTTll~~l~g~~~~~~g~i~i~~ 206 (330)
T 2pt7_A 163 AIKDGIAIG--KNVIVCGGTGSGKTTYIKSIMEFIPKEERIISIED 206 (330)
T ss_dssp HHHHHHHHT--CCEEEEESTTSCHHHHHHHGGGGSCTTSCEEEEES
T ss_pred hhhhhccCC--CEEEEECCCCCCHHHHHHHHhCCCcCCCcEEEECC
Confidence 344444444 3789999999999987655554443 23444443
No 389
>4anj_A Unconventional myosin-VI, green fluorescent prote; motor protein-metal-bindng protein complex, molecular motor, metal-binding protein, transition state; HET: CR2 ADP; 2.60A {Sus scrofa}
Probab=54.29 E-value=9.8 Score=42.80 Aligned_cols=36 Identities=22% Similarity=0.081 Sum_probs=27.8
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHH
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAAC 65 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~ 65 (512)
=..|+..|+..+...+.||.++.|+|||..+=.++.
T Consensus 131 A~~AY~~M~~~~~nQsIiiSGESGAGKTestK~im~ 166 (1052)
T 4anj_A 131 ADKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVLR 166 (1052)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCceEEEecCCCCCHHHHHHHHHH
Confidence 356777788776667999999999999988655443
No 390
>3gmt_A Adenylate kinase; ssgcid, ATP-BIN cytoplasm, nucleotide biosynthesis, nucleotide-BIND transferase, structural genomics; 2.10A {Burkholderia pseudomallei 1710B}
Probab=54.26 E-value=10 Score=34.64 Aligned_cols=26 Identities=19% Similarity=0.071 Sum_probs=21.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
+.-+.+++|+|||.++-.++..++-+
T Consensus 10 ~~~~~G~pGsGKsT~a~~L~~~~g~~ 35 (230)
T 3gmt_A 10 RLILLGAPGAGKGTQANFIKEKFGIP 35 (230)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHTCC
T ss_pred ceeeECCCCCCHHHHHHHHHHHhCCC
Confidence 56788999999999999888877644
No 391
>1hyq_A MIND, cell division inhibitor (MIND-1); MINC, FTSZ, bacterial cell division, cell cycle; 2.60A {Archaeoglobus fulgidus} SCOP: c.37.1.10
Probab=53.88 E-value=12 Score=34.44 Aligned_cols=29 Identities=10% Similarity=0.176 Sum_probs=21.9
Q ss_pred EEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
+.....|.|||.+++.++..+ +++|++|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (263)
T 1hyq_A 7 VASGKGGTGKTTITANLGVALAQLGHDVTIVD 38 (263)
T ss_dssp EEESSSCSCHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCCHHHHHHHHHHHHHhCCCcEEEEE
Confidence 445788999999988777543 56888875
No 392
>3bfv_A CAPA1, CAPB2, membrane protein CAPA1, protein tyrosine kinase; chimerical protein, P-loop protein, capsule biogenesis/degradation; HET: ADP; 1.80A {Staphylococcus aureus} PDB: 2ved_A*
Probab=53.85 E-value=16 Score=34.15 Aligned_cols=31 Identities=29% Similarity=0.268 Sum_probs=21.2
Q ss_pred ceEEEc-CCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 45 SGIIVL-PCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 45 ~~il~~-~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
...+.. ..|.|||.+++.++.. .+++||+|=
T Consensus 84 vI~vts~kgG~GKTt~a~nLA~~lA~~G~rVLLID 118 (271)
T 3bfv_A 84 SIVITSEAPGAGKSTIAANLAVAYAQAGYKTLIVD 118 (271)
T ss_dssp EEEEECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCeEEEEe
Confidence 344444 4699999998777644 467887763
No 393
>1yrb_A ATP(GTP)binding protein; GTPase, P-loop, rossman fold, GDP, HYDR; HET: GDP; 1.75A {Pyrococcus abyssi} SCOP: c.37.1.10 PDB: 1yr6_A* 1yr8_A* 1yr9_A* 1yra_A* 1yr7_A* 2oxr_A*
Probab=53.84 E-value=12 Score=34.39 Aligned_cols=31 Identities=13% Similarity=0.104 Sum_probs=23.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc--CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI--KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~--~~~~Lvl~ 75 (512)
-.++.+..|+|||..+..++..+ +.+++++-
T Consensus 16 i~~~~GkgGvGKTTl~~~La~~l~~g~~v~vvd 48 (262)
T 1yrb_A 16 IVVFVGTAGSGKTTLTGEFGRYLEDNYKVAYVN 48 (262)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHTTTSCEEEEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHHHCCCeEEEEe
Confidence 45777999999999887776443 56777776
No 394
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=53.80 E-value=9.9 Score=37.92 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=12.9
Q ss_pred eEEEcCCCCcHHHHHH
Q 010367 46 GIIVLPCGAGKSLVGV 61 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (512)
.+..+.||+|||.+..
T Consensus 144 ifAYGqTGSGKTyTM~ 159 (403)
T 4etp_A 144 IFAYGQTGSGKTFTML 159 (403)
T ss_dssp EEEESCTTSSHHHHHH
T ss_pred EEEECCCCCCCceEeC
Confidence 3445899999999985
No 395
>2v26_A Myosin VI; calmodulin-binding, nucleotide-binding, membrane, vanadate, transport, PRE- powerstroke, transition state, protein transport; HET: ADP; 1.75A {Sus scrofa} PDB: 2bki_A 2bkh_A 3l9i_A 2x51_A 2vb6_A* 2vas_A*
Probab=53.73 E-value=10 Score=41.22 Aligned_cols=34 Identities=24% Similarity=0.109 Sum_probs=25.8
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
..|+..|+..+...+.||.++.|+|||-.+-.++
T Consensus 128 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 161 (784)
T 2v26_A 128 DKAFRDMKVLKLSQSIIVSGESGAGKTENTKFVL 161 (784)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEcCCCCCCceehHHHHH
Confidence 3667777776655688999999999998764444
No 396
>1v8k_A Kinesin-like protein KIF2C; microtubule destabilizer, structural P; HET: ANP; 2.25A {Mus musculus} SCOP: c.37.1.9 PDB: 1v8j_A* 2gry_A*
Probab=53.64 E-value=8.8 Score=38.29 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=13.7
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 157 tifAYGQTGSGKTyTM~G 174 (410)
T 1v8k_A 157 TCFAYGQTGSGKTHTMGG 174 (410)
T ss_dssp EEEEEESTTSSHHHHHHC
T ss_pred eEEeecCCCCCCCeEeec
Confidence 334458999999999754
No 397
>2qt1_A Nicotinamide riboside kinase 1; non-protein kinase, NAD+, NRK1, nicotinic acid riboside kinase activity, NAD biosynthesis; HET: NNR; 1.32A {Homo sapiens} PDB: 2qsy_A* 2qsz_A* 2qt0_A* 2p0e_A* 2qg6_A* 2ql6_A*
Probab=53.43 E-value=7.6 Score=34.33 Aligned_cols=23 Identities=13% Similarity=-0.031 Sum_probs=18.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..|.+++|+|||.++-.++..+
T Consensus 23 ~i~i~G~~GsGKSTl~~~L~~~~ 45 (207)
T 2qt1_A 23 IIGISGVTNSGKTTLAKNLQKHL 45 (207)
T ss_dssp EEEEEESTTSSHHHHHHHHHTTS
T ss_pred EEEEECCCCCCHHHHHHHHHHhc
Confidence 45688999999998887776654
No 398
>1w9i_A Myosin II heavy chain; molecular motor, ATPase, motor domain, mutant, muscle contraction; HET: ADP; 1.75A {Dictyostelium discoideum} PDB: 1w9j_A* 1w9l_A* 1w9k_A* 1mma_A* 2aka_A 1d0x_A* 1d0y_A* 1d0z_A* 1d1a_A* 1d1b_A* 1d1c_A* 2xel_A* 1yv3_A* 3bz7_A* 3bz8_A* 3bz9_A* 1jwy_A* 1jx2_A* 3mjx_A* 2jhr_A* ...
Probab=53.39 E-value=11 Score=40.90 Aligned_cols=33 Identities=21% Similarity=0.217 Sum_probs=25.5
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
.|+..|+..+...+.||.++.|+|||-.+=.++
T Consensus 161 ~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 193 (770)
T 1w9i_A 161 VAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193 (770)
T ss_dssp HHHHHHHHHCCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhhcCCcEEEEecCCCCcchHHHHHHH
Confidence 677778776655688999999999998764444
No 399
>4gp7_A Metallophosphoesterase; polynucleotide kinase phosphatase, RNA repair, transferase; HET: ATP CIT; 2.00A {Clostridium thermocellum} PDB: 4gp6_A*
Probab=53.39 E-value=6.3 Score=33.86 Aligned_cols=18 Identities=22% Similarity=0.318 Sum_probs=14.9
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
-..+++|.|+|||..+-.
T Consensus 11 i~~l~G~nGsGKSTl~~~ 28 (171)
T 4gp7_A 11 LVVLIGSSGSGKSTFAKK 28 (171)
T ss_dssp EEEEECCTTSCHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHH
Confidence 567899999999987655
No 400
>1ihu_A Arsenical pump-driving ATPase; aluminum fluoride, ADP, ARSA ATPase, ATP binding site, hydro; HET: ADP; 2.15A {Escherichia coli} SCOP: c.37.1.10 c.37.1.10 PDB: 1f48_A* 1ii0_A* 1ii9_A*
Probab=53.38 E-value=12 Score=39.32 Aligned_cols=32 Identities=22% Similarity=0.213 Sum_probs=25.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
+-.++.+..|.|||.++..++.. .+++||+|-
T Consensus 9 ~i~~~sgkGGvGKTT~a~~lA~~lA~~G~rVLlvd 43 (589)
T 1ihu_A 9 PYLFFTGKGGVGKTSISCATAIRLAEQGKRVLLVS 43 (589)
T ss_dssp SEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEEeCCCcCHHHHHHHHHHHHHHHCCCcEEEEE
Confidence 45677789999999998777643 467888876
No 401
>2ocp_A DGK, deoxyguanosine kinase; protein-nucleotide complex, transferase; HET: DTP; 2.80A {Homo sapiens} SCOP: c.37.1.1
Probab=53.28 E-value=10 Score=34.41 Aligned_cols=25 Identities=16% Similarity=-0.132 Sum_probs=21.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
-.++.++.|+|||.++-.++..+..
T Consensus 4 ~i~~~G~~g~GKtt~~~~l~~~l~~ 28 (241)
T 2ocp_A 4 RLSIEGNIAVGKSTFVKLLTKTYPE 28 (241)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHCTT
T ss_pred EEEEEcCCCCCHHHHHHHHHHHcCC
Confidence 4678899999999998888887754
No 402
>3p32_A Probable GTPase RV1496/MT1543; structural genomics, seattle structural genomics center for infectious disease, ssgcid, MEAB, MMAA; HET: GDP PGE; 1.90A {Mycobacterium tuberculosis} PDB: 3md0_A* 4gt1_A* 3nxs_A* 3tk1_A*
Probab=53.25 E-value=26 Score=33.99 Aligned_cols=34 Identities=24% Similarity=0.086 Sum_probs=25.3
Q ss_pred CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 42 RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 42 ~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
+....++++++|+|||.....++..+ +.+++++.
T Consensus 78 ~~~~I~i~G~~G~GKSTl~~~L~~~l~~~g~kV~vi~ 114 (355)
T 3p32_A 78 NAHRVGITGVPGVGKSTAIEALGMHLIERGHRVAVLA 114 (355)
T ss_dssp CSEEEEEECCTTSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred CceEEEEECCCCCCHHHHHHHHHHHHHhCCCceEEEe
Confidence 34567889999999999987776543 56777665
No 403
>1g3q_A MIND ATPase, cell division inhibitor; alpha-beta-alpha layered, protein-ADP complex, cell cycle, hydrolase; HET: ADP; 2.00A {Pyrococcus furiosus} SCOP: c.37.1.10 PDB: 1g3r_A* 1ion_A*
Probab=53.24 E-value=11 Score=33.97 Aligned_cols=30 Identities=20% Similarity=0.316 Sum_probs=21.7
Q ss_pred EEEcCCCCcHHHHHHHHHHhc---CCCEEEEEc
Q 010367 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCLAT 76 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P 76 (512)
+.....|.|||.+++.++..+ +++|+++=.
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD~ 39 (237)
T 1g3q_A 7 IVSGKGGTGKTTVTANLSVALGDRGRKVLAVDG 39 (237)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEEC
T ss_pred EecCCCCCCHHHHHHHHHHHHHhcCCeEEEEeC
Confidence 334577999999988777543 568888753
No 404
>2nr8_A Kinesin-like protein KIF9; motor domain, ADP, structural genomics, structural genomics consortium, SGC, contractIle protein; HET: ADP; 2.00A {Homo sapiens} PDB: 3nwn_A*
Probab=53.17 E-value=10 Score=37.13 Aligned_cols=16 Identities=25% Similarity=0.293 Sum_probs=12.6
Q ss_pred EEEcCCCCcHHHHHHH
Q 010367 47 IIVLPCGAGKSLVGVS 62 (512)
Q Consensus 47 il~~~tG~GKTl~~i~ 62 (512)
+..+.||+|||.+...
T Consensus 108 fAYGqTGSGKTyTM~G 123 (358)
T 2nr8_A 108 MCYGQTGAGKTYTMMG 123 (358)
T ss_dssp EEEESTTSSHHHHHTB
T ss_pred EEECCCCCCCceEecc
Confidence 4448999999999743
No 405
>3b6u_A Kinesin-like protein KIF3B; structural genomics consortium, motor domain, ADP, SGC, ATP-binding, coiled coil, microtubule, motor protein; HET: ADP; 1.80A {Homo sapiens} PDB: 3b6v_A*
Probab=53.16 E-value=10 Score=37.33 Aligned_cols=18 Identities=17% Similarity=0.086 Sum_probs=13.6
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 104 tifAYGqTGSGKTyTM~G 121 (372)
T 3b6u_A 104 TIFAYGQTGTGKTYTMEG 121 (372)
T ss_dssp EEEEEESTTSSHHHHHTB
T ss_pred eEEeecCCCCCCCEeEec
Confidence 334458999999998753
No 406
>2f6r_A COA synthase, bifunctional coenzyme A synthase; 18044849, bifunctional coenzyme A synthase (COA synthase), S genomics; HET: ACO UNL; 1.70A {Mus musculus}
Probab=53.13 E-value=8.6 Score=36.16 Aligned_cols=23 Identities=22% Similarity=0.092 Sum_probs=18.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
...|.+++|+|||.++-.++ .++
T Consensus 77 iI~I~G~~GSGKSTva~~La-~lg 99 (281)
T 2f6r_A 77 VLGLTGISGSGKSSVAQRLK-NLG 99 (281)
T ss_dssp EEEEEECTTSCHHHHHHHHH-HHT
T ss_pred EEEEECCCCCCHHHHHHHHH-HCC
Confidence 46788999999999987777 444
No 407
>3gbj_A KIF13B protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, ATP-binding, microtubule, motor protein; HET: ADP; 2.10A {Homo sapiens} SCOP: c.37.1.9
Probab=53.07 E-value=10 Score=37.08 Aligned_cols=16 Identities=25% Similarity=0.154 Sum_probs=12.7
Q ss_pred eEEEcCCCCcHHHHHH
Q 010367 46 GIIVLPCGAGKSLVGV 61 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (512)
.+..+.||+|||.+..
T Consensus 96 ifAYGqTGSGKTyTm~ 111 (354)
T 3gbj_A 96 IFAYGQTGSGKSYTMM 111 (354)
T ss_dssp EEEEECTTSSHHHHHT
T ss_pred EEeeCCCCCCCceEEe
Confidence 3445899999999974
No 408
>2vvg_A Kinesin-2; motor protein, nucleotide-binding, microtubule, ATP-binding; HET: ADP; 1.60A {Giardia intestinalis}
Probab=52.99 E-value=11 Score=36.86 Aligned_cols=17 Identities=24% Similarity=0.077 Sum_probs=13.1
Q ss_pred ceEEEcCCCCcHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (512)
..+..+.||+|||.+..
T Consensus 92 tifAYGqTGSGKTyTm~ 108 (350)
T 2vvg_A 92 TIFAYGQTGAGKTWTMG 108 (350)
T ss_dssp EEEEECSTTSSHHHHHT
T ss_pred eEEeecCCCCCCCEEee
Confidence 34445899999999864
No 409
>2y65_A Kinesin, kinesin heavy chain; motor protein; HET: ADP; 2.20A {Drosophila melanogaster} PDB: 2y5w_A*
Probab=52.97 E-value=11 Score=37.11 Aligned_cols=18 Identities=11% Similarity=-0.055 Sum_probs=13.6
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 87 tifAYGqTGSGKTyTm~G 104 (365)
T 2y65_A 87 TIFAYGQTSSGKTHTMEG 104 (365)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred EEEeecCCCCCCceEEec
Confidence 344458999999999743
No 410
>1z6g_A Guanylate kinase; structural genomics, SGC, structural genom consortium, transferase; HET: EPE; 2.18A {Plasmodium falciparum}
Probab=52.84 E-value=14 Score=33.00 Aligned_cols=30 Identities=17% Similarity=0.111 Sum_probs=20.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCCEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKSCLC 73 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~~Lv 73 (512)
.-..|++|.|+|||...-.++....+.+.+
T Consensus 24 ~~~~lvGpsGsGKSTLl~~L~g~~pG~i~~ 53 (218)
T 1z6g_A 24 YPLVICGPSGVGKGTLIKKLLNEFPNYFYF 53 (218)
T ss_dssp CCEEEECSTTSSHHHHHHHHHHHSTTTEEE
T ss_pred CEEEEECCCCCCHHHHHHHHHhhCCCcEEE
Confidence 367899999999998766655544233433
No 411
>2wsm_A Hydrogenase expression/formation protein (HYPB); metal binding protein; 2.30A {Archaeoglobus fulgidus}
Probab=52.56 E-value=12 Score=33.30 Aligned_cols=46 Identities=15% Similarity=0.074 Sum_probs=29.3
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC--CCEEEEE
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK--KSCLCLA 75 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~--~~~Lvl~ 75 (512)
+.+.+...+...+....+++++.|+|||...-.++.... .++.++.
T Consensus 17 ~~~~~~~~~~~~~~~~i~i~G~~g~GKTTl~~~l~~~~~~~~~~~~i~ 64 (221)
T 2wsm_A 17 LAEKNREALRESGTVAVNIMGAIGSGKTLLIERTIERIGNEVKIGAML 64 (221)
T ss_dssp HHHHHHHHHHHHTCEEEEEEECTTSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred HHHHHHHhhcccCceEEEEEcCCCCCHHHHHHHHHHHhccCCeEEEEe
Confidence 334444444433445788999999999988777765532 3455554
No 412
>1t5c_A CENP-E protein, centromeric protein E; kinesin motor-domain-ADP complex, stranded beta-sheet core with solvent exposed alpha-helices; HET: ADP PIN; 2.50A {Homo sapiens}
Probab=52.43 E-value=11 Score=36.84 Aligned_cols=17 Identities=12% Similarity=0.042 Sum_probs=13.2
Q ss_pred ceEEEcCCCCcHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (512)
..+..+.||+|||.+..
T Consensus 80 tifAYGqTGSGKTyTM~ 96 (349)
T 1t5c_A 80 TIFAYGQTASGKTYTMM 96 (349)
T ss_dssp EEEEEESTTSSHHHHHT
T ss_pred ceeeecCCCCCCCeEEe
Confidence 34445899999999874
No 413
>2og2_A Putative signal recognition particle receptor; nucleotide-binding, protein transport; 2.00A {Arabidopsis thaliana}
Probab=52.35 E-value=12 Score=36.60 Aligned_cols=31 Identities=29% Similarity=0.171 Sum_probs=22.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
-..+++|.|+|||.+.-.++..+ ++++++..
T Consensus 159 vi~lvG~nGsGKTTll~~Lag~l~~~~G~V~l~g 192 (359)
T 2og2_A 159 VIMIVGVNGGGKTTSLGKLAHRLKNEGTKVLMAA 192 (359)
T ss_dssp EEEEECCTTSCHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEcCCCChHHHHHHHHHhhccccCCEEEEec
Confidence 45688999999998876665443 46666654
No 414
>3ug7_A Arsenical pump-driving ATPase; tail-anchored, membrane protein, targeting factor, ATP-bindi TRC40, ARSA, nucleotide-binding; HET: ADP; 2.90A {Methanocaldococcus jannaschii} PDB: 3ug6_A*
Probab=52.32 E-value=13 Score=36.20 Aligned_cols=31 Identities=10% Similarity=0.050 Sum_probs=23.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
-.+..+.-|.|||.++..++.. .+++||+|-
T Consensus 28 i~v~sgKGGvGKTTvA~~LA~~lA~~G~rVLlvD 61 (349)
T 3ug7_A 28 YIMFGGKGGVGKTTMSAATGVYLAEKGLKVVIVS 61 (349)
T ss_dssp EEEEECSSSTTHHHHHHHHHHHHHHSSCCEEEEE
T ss_pred EEEEeCCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 4556678899999998777644 467888886
No 415
>2h58_A Kinesin-like protein KIFC3 variant; motor domain, ADP, structural genomics, structur Al genomics consortium, SGC; HET: ADP; 1.85A {Homo sapiens}
Probab=52.18 E-value=11 Score=36.37 Aligned_cols=26 Identities=15% Similarity=-0.008 Sum_probs=16.5
Q ss_pred HHHHhCCCCcceEEEcCCCCcHHHHHH
Q 010367 35 SKMFGNGRARSGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 35 ~~~~~~~~~~~~il~~~tG~GKTl~~i 61 (512)
...+.+. .-..+..+.||+|||.+..
T Consensus 74 ~~~l~G~-n~tifAYGqTGSGKTyTm~ 99 (330)
T 2h58_A 74 TSCIDGF-NVCIFAYGQTGAGKTYTME 99 (330)
T ss_dssp HHHHTTC-CEEEEEESSTTSSHHHHHT
T ss_pred HHHhCCC-EEEEEeECCCCCCCcEEEe
Confidence 3345443 1233445899999999875
No 416
>3kta_A Chromosome segregation protein SMC; structural maintenance of chromosomes, ABC ATPase, CFTR adenylate kinase, AP5A, transferase; HET: AP5; 1.63A {Pyrococcus furiosus} PDB: 1xex_A* 1xew_X*
Probab=52.16 E-value=10 Score=32.54 Aligned_cols=23 Identities=30% Similarity=0.283 Sum_probs=17.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-.+|++|.|+|||.+.-++...+
T Consensus 28 ~~~i~G~NGsGKStll~ai~~~l 50 (182)
T 3kta_A 28 FTAIVGANGSGKSNIGDAILFVL 50 (182)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHT
T ss_pred cEEEECCCCCCHHHHHHHHHHHH
Confidence 56899999999998865554443
No 417
>4a14_A Kinesin, kinesin-like protein KIF7; motor protein, motor domain; HET: ADP; 1.60A {Homo sapiens} SCOP: c.37.1.0 PDB: 2xt3_A*
Probab=52.10 E-value=11 Score=36.62 Aligned_cols=17 Identities=18% Similarity=0.089 Sum_probs=13.0
Q ss_pred ceEEEcCCCCcHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (512)
..+..+.||+|||.+..
T Consensus 86 tifAYGqTGSGKTyTm~ 102 (344)
T 4a14_A 86 TVFAYGQTGSGKTYTMG 102 (344)
T ss_dssp EEEEESSTTSSHHHHHC
T ss_pred eEEEecccCCCceEeec
Confidence 33445899999999863
No 418
>4db1_A Myosin-7; S1DC, cardiac, beta isoform, MYH7, myhcb, MYHC-beta, contractIle protein; HET: ANP; 2.60A {Homo sapiens} PDB: 2w4a_M 2w4g_M 2w4h_M 2mys_A* 1m8q_A* 1mvw_A* 1o18_A* 1o19_A* 1o1a_A* 1o1b_A* 1o1c_A* 1o1d_A* 1o1e_A* 1o1f_A* 1o1g_A*
Probab=52.09 E-value=12 Score=40.79 Aligned_cols=35 Identities=20% Similarity=0.257 Sum_probs=26.4
Q ss_pred HHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 30 QEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
=..|+..|+..+...+.||.++.|+|||-.+=.++
T Consensus 158 A~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~im 192 (783)
T 4db1_A 158 SDNAYQYMLTDRENQSILITGESGAGKTVNTKRVI 192 (783)
T ss_dssp HHHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHHhhCCCceEEEeCCCCCCCchHHHHHH
Confidence 34666777776665689999999999998865444
No 419
>1w7j_A Myosin VA; motor protein, unconventional myosin, myosin V, chicken, molecular motor, ATPase, ELC, IQ motif, muscle protein, ATP-binding; HET: ADP; 2A {Gallus gallus} SCOP: b.34.3.1 c.37.1.9 PDB: 1w7i_A* 1oe9_A* 1w8j_A
Probab=52.05 E-value=12 Score=40.93 Aligned_cols=34 Identities=29% Similarity=0.340 Sum_probs=26.1
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
..|+..|+..+...+.||.++.|+|||..+=.++
T Consensus 144 ~~Ay~~m~~~~~nQsIiisGESGAGKTe~tK~i~ 177 (795)
T 1w7j_A 144 EEAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177 (795)
T ss_dssp HHHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHhHhcCCCeEEEEeCCCCCCcchHHHHHH
Confidence 3677778776655688999999999998865444
No 420
>2ph1_A Nucleotide-binding protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; 2.70A {Archaeoglobus fulgidus dsm 4304} PDB: 3kb1_A*
Probab=52.05 E-value=11 Score=34.73 Aligned_cols=29 Identities=28% Similarity=0.195 Sum_probs=20.9
Q ss_pred EEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
+.....|.|||.+++.++..+ +++||+|=
T Consensus 23 v~s~kGGvGKTT~a~nLA~~la~~G~~VlliD 54 (262)
T 2ph1_A 23 VMSGKGGVGKSTVTALLAVHYARQGKKVGILD 54 (262)
T ss_dssp EECSSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEcCCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 334577999999988777543 56888764
No 421
>1ltq_A Polynucleotide kinase; phosphatase, alpha/beta, P-loop, transferase; HET: ADP; 2.33A {Enterobacteria phage T4} SCOP: c.108.1.9 c.37.1.1 PDB: 1rc8_A* 1rpz_A* 1rrc_A* 2ia5_A
Probab=52.03 E-value=12 Score=35.34 Aligned_cols=23 Identities=17% Similarity=0.005 Sum_probs=19.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-.++.+++|+|||.++-.++...
T Consensus 4 ~I~l~G~~GsGKST~a~~L~~~~ 26 (301)
T 1ltq_A 4 IILTIGCPGSGKSTWAREFIAKN 26 (301)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHHhC
Confidence 46889999999999988887754
No 422
>2zfi_A Kinesin-like protein KIF1A, kinesin heavy chain isoform 5C; alpha and beta protein, enzyme, ATPase, P-loop, motor protein, ATP-binding, coiled coil; HET: ADP; 1.55A {Mus musculus} SCOP: c.37.1.9 PDB: 1vfw_A* 1vfx_A* 1vfz_A* 1vfv_A* 2zfj_A* 2zfk_A* 2zfl_A* 2zfm_A* 1i5s_A* 1i6i_A* 2hxf_C* 1ia0_K* 2hxh_C*
Probab=51.41 E-value=12 Score=36.86 Aligned_cols=18 Identities=28% Similarity=0.170 Sum_probs=13.5
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 92 tifAYGqTGSGKTyTm~G 109 (366)
T 2zfi_A 92 CIFAYGQTGAGKSYTMMG 109 (366)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred EEEEeCCCCCCCceEeeC
Confidence 344458999999998753
No 423
>3lre_A Kinesin-like protein KIF18A; motor protein, nucleotide binding, microtubule binding, ATP- cell projection, cytoskeleton, glycoprotein, microtubule; HET: ADP; 2.20A {Homo sapiens} SCOP: c.37.1.0
Probab=51.35 E-value=9.9 Score=37.21 Aligned_cols=17 Identities=24% Similarity=0.221 Sum_probs=13.2
Q ss_pred ceEEEcCCCCcHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i 61 (512)
..+..+.||+|||.+..
T Consensus 108 tifAYGqTGSGKTyTm~ 124 (355)
T 3lre_A 108 TVLAYGATGAGKTHTML 124 (355)
T ss_dssp EEEEECCTTSSHHHHHT
T ss_pred EEEEeCCCCCCceeeec
Confidence 34445899999999874
No 424
>3q9l_A Septum site-determining protein MIND; ATPase, bacterial cell division inhibitor, MINC, MINE, cell hydrolase; HET: ATP; 2.34A {Escherichia coli} PDB: 3r9i_A* 3r9j_A*
Probab=50.92 E-value=12 Score=34.15 Aligned_cols=29 Identities=17% Similarity=0.184 Sum_probs=20.9
Q ss_pred EEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
+...-.|.|||.+++.++.. .+++|++|=
T Consensus 7 v~s~kgGvGKTt~a~~LA~~la~~g~~VlliD 38 (260)
T 3q9l_A 7 VTSGKGGVGKTTSSAAIATGLAQKGKKTVVID 38 (260)
T ss_dssp EECSSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EECCCCCCcHHHHHHHHHHHHHhCCCcEEEEE
Confidence 33456799999998877744 356888764
No 425
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=50.85 E-value=20 Score=37.32 Aligned_cols=42 Identities=19% Similarity=0.175 Sum_probs=33.0
Q ss_pred CCCCcHHHHHHHHHHHhC--CCCcceEEEcCCCCcHHHHHHHHH
Q 010367 23 HAQPRPYQEKSLSKMFGN--GRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 23 ~~~Lr~yQ~~al~~~~~~--~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
.+.-|+-..+.+..++.. +..+-..|+++.|.|||..+..++
T Consensus 125 ~~vGR~~~l~~L~~~L~~~~~~~~~v~I~G~~GiGKTtLa~~~~ 168 (591)
T 1z6t_A 125 VFVTRKKLVNAIQQKLSKLKGEPGWVTIHGMAGCGKSVLAAEAV 168 (591)
T ss_dssp SCCCCHHHHHHHHHHHTTSTTSCEEEEEECCTTSSHHHHHHHHH
T ss_pred eecccHHHHHHHHHHHhcccCCCceEEEEcCCCCCHHHHHHHHH
Confidence 466788888888888763 233567889999999999987775
No 426
>3c8u_A Fructokinase; YP_612366.1, putative fructose transport system kinase, STRU genomics, joint center for structural genomics, JCSG; 1.95A {Silicibacter SP}
Probab=50.81 E-value=8.4 Score=34.19 Aligned_cols=24 Identities=21% Similarity=0.177 Sum_probs=17.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-..|.+|.|+|||..+-.++..+
T Consensus 23 ~~v~I~G~sGsGKSTl~~~l~~~~ 46 (208)
T 3c8u_A 23 QLVALSGAPGSGKSTLSNPLAAAL 46 (208)
T ss_dssp EEEEEECCTTSCTHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 455788999999998876555444
No 427
>2wbe_C Bipolar kinesin KRP-130; EG5, KLP61F, tubulin, mitosis, GTP-binding, motor protein, cell division, cell cycle, microtubule, ATP-binding; HET: GTP ANP GDP TA1; 9.40A {Drosophila melanogaster}
Probab=50.50 E-value=12 Score=36.78 Aligned_cols=18 Identities=22% Similarity=0.171 Sum_probs=13.6
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 103 tifAYGqTGSGKTyTm~G 120 (373)
T 2wbe_C 103 TVFAYGQTGTGKTHTMVG 120 (373)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred EEEeecCCCCCcceeccc
Confidence 344458999999998753
No 428
>1sq5_A Pantothenate kinase; P-loop, transferase; HET: PAU ADP; 2.20A {Escherichia coli} SCOP: c.37.1.6 PDB: 1esm_A* 1esn_A*
Probab=50.48 E-value=24 Score=33.44 Aligned_cols=23 Identities=17% Similarity=0.010 Sum_probs=17.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..|.+|.|+|||.++-.++..+
T Consensus 82 iigI~G~~GsGKSTl~~~L~~~l 104 (308)
T 1sq5_A 82 IISIAGSVAVGKSTTARVLQALL 104 (308)
T ss_dssp EEEEEECTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 45677999999998876666544
No 429
>1x88_A Kinesin-like protein KIF11; switch II, motor domain, NECK linker, cell cycle; HET: ADP NAT; 1.80A {Homo sapiens} SCOP: c.37.1.9 PDB: 3hqd_A* 3ken_A* 2pg2_A* 1yrs_A* 2fme_A* 2g1q_A* 2gm1_A* 1ii6_A* 2uyi_A* 2uym_A* 2wog_A* 2x2r_A* 2x7c_A* 2x7d_A* 2x7e_A* 2xae_A* 3k3b_A* 3k5e_A* 3l9h_A* 1q0b_A* ...
Probab=49.95 E-value=10 Score=37.11 Aligned_cols=17 Identities=18% Similarity=0.100 Sum_probs=13.1
Q ss_pred eEEEcCCCCcHHHHHHH
Q 010367 46 GIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~ 62 (512)
.+..+.||+|||.+...
T Consensus 92 ifAYGqTGSGKTyTM~G 108 (359)
T 1x88_A 92 IFAYGQTGTGKTFTMEG 108 (359)
T ss_dssp EEEEECTTSSHHHHHTB
T ss_pred EEEeCCCCCCCceEEec
Confidence 34458999999998753
No 430
>1ypw_A Transitional endoplasmic reticulum ATPase; AAA, P97/VCP, ERAD, CDC48; HET: ADP ANP; 3.50A {Mus musculus} PDB: 1oz4_A* 1yq0_A* 1yqi_A* 1r7r_A* 3cf2_A* 3cf1_A* 3cf3_A*
Probab=49.89 E-value=4.5 Score=44.43 Aligned_cols=29 Identities=21% Similarity=0.324 Sum_probs=23.4
Q ss_pred CcceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 43 ARSGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 43 ~~~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
.++.++.+|+|+|||.++-+++..++.++
T Consensus 511 ~~~vLL~GppGtGKT~Lakala~~~~~~~ 539 (806)
T 1ypw_A 511 SKGVLFYGPPGCGKTLLAKAIANECQANF 539 (806)
T ss_dssp CCCCCCBCCTTSSHHHHHHHHHHHHTCCC
T ss_pred CceeEEECCCCCCHHHHHHHHHHHhCCCE
Confidence 35689999999999999888887765443
No 431
>1f2t_A RAD50 ABC-ATPase; DNA double-strand break repair, replication; 1.60A {Pyrococcus furiosus} SCOP: c.37.1.12 PDB: 1f2u_A* 1us8_A*
Probab=49.56 E-value=9.8 Score=31.92 Aligned_cols=18 Identities=28% Similarity=0.285 Sum_probs=14.6
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
-.+|.+|+|+|||.+.-+
T Consensus 25 ~~~I~G~NGsGKStil~A 42 (149)
T 1f2t_A 25 INLIIGQNGSGKSSLLDA 42 (149)
T ss_dssp EEEEECCTTSSHHHHHHH
T ss_pred eEEEECCCCCCHHHHHHH
Confidence 568999999999987433
No 432
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=49.51 E-value=12 Score=37.36 Aligned_cols=27 Identities=11% Similarity=0.007 Sum_probs=17.0
Q ss_pred HHHHHhCCCCcceEEEcCCCCcHHHHHH
Q 010367 34 LSKMFGNGRARSGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 34 l~~~~~~~~~~~~il~~~tG~GKTl~~i 61 (512)
+..++.+. .-..+..+.||+|||.+..
T Consensus 131 v~~~l~G~-n~tifAYGqTGSGKTyTM~ 157 (412)
T 3u06_A 131 IQSALDGY-NICIFAYGQTGSGKTYTMD 157 (412)
T ss_dssp HHHHHTTC-CEEEEEESSTTSSHHHHHT
T ss_pred HHHHHCCC-ceEEEEecCCCCCCeeEec
Confidence 34445443 1233445899999999974
No 433
>3f9v_A Minichromosome maintenance protein MCM; replicative helicase, DNA replication, MCM complex, AAA+ Pro ATP-binding, DNA-binding, helicase; 4.35A {Sulfolobus solfataricus}
Probab=49.34 E-value=10 Score=40.04 Aligned_cols=24 Identities=17% Similarity=-0.052 Sum_probs=19.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+.++.+|+|+|||..+-.++....
T Consensus 329 ~vLL~GppGtGKT~LAr~la~~~~ 352 (595)
T 3f9v_A 329 HILIIGDPGTAKSQMLQFISRVAP 352 (595)
T ss_dssp CEEEEESSCCTHHHHHHSSSTTCS
T ss_pred ceEEECCCchHHHHHHHHHHHhCC
Confidence 799999999999988776665553
No 434
>2heh_A KIF2C protein; kinesin, motor domain, ADP, structural genomics, structural genomics consortium, SGC, structural protein; HET: ADP; 2.15A {Homo sapiens} PDB: 3edl_D*
Probab=49.32 E-value=11 Score=37.27 Aligned_cols=18 Identities=17% Similarity=0.080 Sum_probs=13.2
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 137 tifAYGQTGSGKTyTM~G 154 (387)
T 2heh_A 137 TCFAYGQTGSGKTHTMGG 154 (387)
T ss_dssp EEEEESCTTSSHHHHHC-
T ss_pred EEEEecCCCCCCCeEecc
Confidence 334458999999999754
No 435
>4dzz_A Plasmid partitioning protein PARF; deviant walker BOX, DNA segregation, unknown function; HET: ADP; 1.80A {Escherichia coli} PDB: 4e03_A* 4e07_A* 4e09_A*
Probab=48.99 E-value=12 Score=32.78 Aligned_cols=26 Identities=15% Similarity=0.120 Sum_probs=19.5
Q ss_pred cCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 50 LPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 50 ~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
..-|.|||.+++.++.. .+++|+++=
T Consensus 9 ~kgG~GKTt~a~~la~~la~~g~~vlliD 37 (206)
T 4dzz_A 9 PKGGSGKTTAVINIATALSRSGYNIAVVD 37 (206)
T ss_dssp SSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCccHHHHHHHHHHHHHHCCCeEEEEE
Confidence 56789999998877754 356787775
No 436
>2owm_A Nckin3-434, related to kinesin-like protein KIF1C; motor domain, ADP, NECK linker, motor PR; HET: ADP; 3.25A {Neurospora crassa}
Probab=48.84 E-value=13 Score=37.49 Aligned_cols=18 Identities=22% Similarity=0.146 Sum_probs=13.5
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 139 tIfAYGQTGSGKTyTM~G 156 (443)
T 2owm_A 139 CIFAYGQTGSGKSYTMMG 156 (443)
T ss_dssp EEEEESSTTSSHHHHHTC
T ss_pred EEEEeCCCCCCCCEEeec
Confidence 334458999999999753
No 437
>2obl_A ESCN; ATPase, hydrolase; 1.80A {Escherichia coli O127} PDB: 2obm_A*
Probab=48.78 E-value=15 Score=35.67 Aligned_cols=38 Identities=16% Similarity=0.096 Sum_probs=27.3
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+++.++.-++.....|.+|.|+|||...-.++....
T Consensus 59 ~~ald~ll~i~~Gq~~gIiG~nGaGKTTLl~~I~g~~~ 96 (347)
T 2obl_A 59 VRAIDGLLTCGIGQRIGIFAGSGVGKSTLLGMICNGAS 96 (347)
T ss_dssp CHHHHHHSCEETTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred CEEEEeeeeecCCCEEEEECCCCCCHHHHHHHHhcCCC
Confidence 57888875433335788999999999988555555544
No 438
>1kk8_A Myosin heavy chain, striated muscle; actin-detached, mechanics of motor, contractIle PROT; HET: ADP; 2.30A {Argopecten irradians} SCOP: b.34.3.1 c.37.1.9 PDB: 1kk7_A* 1qvi_A* 1s5g_A* 1sr6_A 1b7t_A* 1kqm_A* 1kwo_A* 1l2o_A* 1dfl_A* 2w4t_C 2w4v_C 2w4w_C 1dfk_A 2ec6_A 2otg_A* 2os8_A* 2ovk_A 2ekv_A 2ekw_A 2oy6_A* ...
Probab=48.24 E-value=12 Score=41.02 Aligned_cols=34 Identities=21% Similarity=0.255 Sum_probs=25.5
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
..|+..|+..+...+.||.++.|+|||-.+=.++
T Consensus 157 ~~Ay~~m~~~~~nQsIiiSGESGAGKTe~tK~i~ 190 (837)
T 1kk8_A 157 DNAYQNMVTDRENQSCLITGESGAGKTENTKKVI 190 (837)
T ss_dssp HHHHHHHHHHTSEEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEEeCCCCCCchhhHHHHH
Confidence 3666777776555688999999999998864444
No 439
>1ye8_A Protein THEP1, hypothetical UPF0334 kinase-like protein AQ_1292; mixed alpha-beta protein, rossman fold, signaling protein, transferase; 1.40A {Aquifex aeolicus} SCOP: c.37.1.11
Probab=48.21 E-value=11 Score=32.73 Aligned_cols=23 Identities=26% Similarity=0.190 Sum_probs=17.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
...|.+|.|+|||...-.++..+
T Consensus 2 ~i~l~G~nGsGKTTLl~~l~g~l 24 (178)
T 1ye8_A 2 KIIITGEPGVGKTTLVKKIVERL 24 (178)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 46789999999998876665544
No 440
>1gtv_A TMK, thymidylate kinase; transferase, transferase (ATP:TMP phosphotransferase); HET: TYD TMP; 1.55A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1g3u_A* 1gsi_A* 1mrn_A* 1mrs_A* 1n5i_A* 1n5j_A* 1n5k_A* 1n5l_A* 1w2g_A* 1w2h_A*
Probab=47.71 E-value=5.9 Score=35.11 Aligned_cols=23 Identities=22% Similarity=0.037 Sum_probs=19.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcC
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.+|.++.|+|||.++-.++..+.
T Consensus 3 I~i~G~~GsGKsTl~~~L~~~l~ 25 (214)
T 1gtv_A 3 IAIEGVDGAGKRTLVEKLSGAFR 25 (214)
T ss_dssp EEEEEEEEEEHHHHHHHHHHHHH
T ss_pred EEEEcCCCCCHHHHHHHHHHHHH
Confidence 57889999999999877776653
No 441
>1dek_A Deoxynucleoside monophosphate kinase; transferase, phosphotransferase; HET: DGP; 2.00A {Enterobacteria phage T4} SCOP: c.37.1.1 PDB: 1del_A*
Probab=47.62 E-value=23 Score=32.42 Aligned_cols=43 Identities=9% Similarity=0.001 Sum_probs=33.7
Q ss_pred eEEEcCCCCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHH
Q 010367 46 GIIVLPCGAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKL 90 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~ 90 (512)
..|+++.|+|||.++-.+...++ +-++.|...+...+.+.|..
T Consensus 4 i~ltG~~~sGK~tv~~~l~~~~g--~~~~~~~~~~~~~~~~~~g~ 46 (241)
T 1dek_A 4 IFLSGVKRSGKDTTADFIMSNYS--AVKYQLAGPIKDALAYAWGV 46 (241)
T ss_dssp EEEECCTTSSHHHHHHHHHHHSC--EEECCTTHHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHhcC--CeEEecChHHHHHHHHHccc
Confidence 45789999999999988877665 33578888888888877764
No 442
>3lnc_A Guanylate kinase, GMP kinase; ALS collaborative crystallography, emerald biostructures, ATP-binding, cytoplasm, nucleotide-binding; HET: 5GP; 1.95A {Anaplasma phagocytophilum}
Probab=47.53 E-value=7.2 Score=35.27 Aligned_cols=20 Identities=25% Similarity=0.348 Sum_probs=12.6
Q ss_pred ceEEEcCCCCcHHHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i 64 (512)
-..|.+|.|+|||.+.-.++
T Consensus 29 ii~l~Gp~GsGKSTl~~~L~ 48 (231)
T 3lnc_A 29 ILVLSSPSGCGKTTVANKLL 48 (231)
T ss_dssp EEEEECSCC----CHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHH
Confidence 56788999999998876665
No 443
>3tmk_A Thymidylate kinase; phosphotransferase; HET: T5A; 2.00A {Saccharomyces cerevisiae} SCOP: c.37.1.1 PDB: 2tmk_A* 1tmk_A*
Probab=46.87 E-value=20 Score=32.27 Aligned_cols=27 Identities=11% Similarity=-0.068 Sum_probs=21.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcCCC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIKKS 70 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~~~ 70 (512)
.-.++.++.|+|||.++-.++..+...
T Consensus 6 ~~i~~eG~~g~GKst~~~~l~~~l~~~ 32 (216)
T 3tmk_A 6 KLILIEGLDRTGKTTQCNILYKKLQPN 32 (216)
T ss_dssp CEEEEEECSSSSHHHHHHHHHHHHCSS
T ss_pred eEEEEECCCCCCHHHHHHHHHHHhccc
Confidence 356778999999999988888777654
No 444
>1g8x_A Myosin II heavy chain fused to alpha-actinin 3; motor, lever ARM, protein engineering, structural protein; HET: ADP; 2.80A {Dictyostelium discoideum} SCOP: k.1.1.1
Probab=46.67 E-value=15 Score=41.30 Aligned_cols=34 Identities=21% Similarity=0.237 Sum_probs=25.6
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
..|+..|+..+...+.||.++.|+|||-.+=.++
T Consensus 160 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 193 (1010)
T 1g8x_A 160 DVAYRSMLDDRQNQSLLITGESGAGKTENTKKVI 193 (1010)
T ss_dssp HHHHHHHHHHTCCEEEEEEESTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCeEEEEeCCCCCCcchHHHHHH
Confidence 3666777776655688999999999998864444
No 445
>2ycu_A Non muscle myosin 2C, alpha-actinin; motor protein; HET: AOV; 2.25A {Homo sapiens} PDB: 1br1_A* 1br4_A* 1br2_A*
Probab=46.52 E-value=15 Score=41.23 Aligned_cols=34 Identities=21% Similarity=0.179 Sum_probs=25.9
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
..|+..|+..+...+.||.++.|+|||..+=.++
T Consensus 134 ~~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 167 (995)
T 2ycu_A 134 EGAYRSMLQDREDQSILCTGESGAGKTENTKKVI 167 (995)
T ss_dssp HHHHHHHHHHCCCEEEEEECBTTSSHHHHHHHHH
T ss_pred HHHHHHHHhcCCCcEEEecCCCCCCchhhHHHHH
Confidence 3667777776655688999999999998864444
No 446
>1tf7_A KAIC; homohexamer, hexamer, circadian clock protein; HET: ATP; 2.80A {Synechococcus SP} SCOP: c.37.1.11 c.37.1.11 PDB: 3s1a_A* 1u9i_A* 2gbl_A* 3dvl_A* 3k0a_A* 3k09_A* 3jzm_A* 3k0e_A* 4dug_A* 3ua2_A* 3k0c_A* 3k0f_A*
Probab=46.37 E-value=35 Score=35.09 Aligned_cols=54 Identities=20% Similarity=0.214 Sum_probs=34.4
Q ss_pred HHHHHHhCC--CCcceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEEcChhhHHHHHHH
Q 010367 33 SLSKMFGNG--RARSGIIVLPCGAGKSLVGVSAACRI---KKSCLCLATNAVSVDQWAFQ 87 (512)
Q Consensus 33 al~~~~~~~--~~~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~P~~~L~~Qw~~~ 87 (512)
.+..++..+ ...-.+|.+|.|+|||..+..++... +.+++++++... ..|....
T Consensus 269 ~ld~vL~g~i~~G~i~~i~G~~GsGKSTLl~~l~g~~~~~G~~vi~~~~ee~-~~~l~~~ 327 (525)
T 1tf7_A 269 RLDEMCGGGFFKDSIILATGATGTGKTLLVSRFVENACANKERAILFAYEES-RAQLLRN 327 (525)
T ss_dssp HHHHHTTSSEESSCEEEEEECTTSSHHHHHHHHHHHHHTTTCCEEEEESSSC-HHHHHHH
T ss_pred HHHHHhCCCCCCCcEEEEEeCCCCCHHHHHHHHHHHHHhCCCCEEEEEEeCC-HHHHHHH
Confidence 356666543 22356788999999999876666432 457888887543 3444433
No 447
>3cob_A Kinesin heavy chain-like protein; motor, switch II, loop L11, conformation, nucleotide, ATP-binding, microtubule, motor protein; HET: ADP; 2.20A {Solanum tuberosum} SCOP: c.37.1.9 PDB: 3cnz_A* 1sdm_A* 3h4s_A*
Probab=46.18 E-value=12 Score=36.91 Aligned_cols=15 Identities=20% Similarity=0.211 Sum_probs=12.2
Q ss_pred EEEcCCCCcHHHHHH
Q 010367 47 IIVLPCGAGKSLVGV 61 (512)
Q Consensus 47 il~~~tG~GKTl~~i 61 (512)
+..+.||+|||.+..
T Consensus 84 fAYGqTGSGKTyTM~ 98 (369)
T 3cob_A 84 FAYGQTGSGKTFTIY 98 (369)
T ss_dssp EEEECTTSSHHHHHT
T ss_pred EEECCCCCCCeEeec
Confidence 345899999999874
No 448
>1odf_A YGR205W, hypothetical 33.3 kDa protein in ADE3-Ser2 intergenic region; yeast protein, ATP binding protein; 2.25A {Saccharomyces cerevisiae} SCOP: c.37.1.6
Probab=45.68 E-value=12 Score=35.42 Aligned_cols=23 Identities=22% Similarity=0.270 Sum_probs=17.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..|++++|+|||..+-.+...+
T Consensus 33 ii~I~G~sGsGKSTla~~L~~~l 55 (290)
T 1odf_A 33 FIFFSGPQGSGKSFTSIQIYNHL 55 (290)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45678999999999876666544
No 449
>4eaq_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, MTBI, transferase; HET: ATM; 1.85A {Staphylococcus aureus subsp} PDB: 4dwj_A* 4f4i_A
Probab=45.67 E-value=13 Score=33.71 Aligned_cols=25 Identities=24% Similarity=0.106 Sum_probs=20.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.++.++.|+|||.++-.++..+.
T Consensus 27 ~~i~i~G~~GsGKsT~~~~l~~~l~ 51 (229)
T 4eaq_A 27 AFITFEGPEGSGKTTVINEVYHRLV 51 (229)
T ss_dssp EEEEEECCTTSCHHHHHHHHHHHHT
T ss_pred eEEEEEcCCCCCHHHHHHHHHHHHh
Confidence 3567889999999999888877665
No 450
>3k9g_A PF-32 protein; ssgcid, SBRI, decode biostructures, UW, NIH, niaid, borellia burgdorferi, plasmid partition protein, iodide; 2.25A {Borrelia burgdorferi} PDB: 3k9h_A
Probab=45.65 E-value=12 Score=34.43 Aligned_cols=45 Identities=20% Similarity=0.201 Sum_probs=21.0
Q ss_pred HHHHHHHHHhCCCCcceEE-EcCCCCcHHHHHHHHHHhc--CCCEEEEE
Q 010367 30 QEKSLSKMFGNGRARSGII-VLPCGAGKSLVGVSAACRI--KKSCLCLA 75 (512)
Q Consensus 30 Q~~al~~~~~~~~~~~~il-~~~tG~GKTl~~i~~i~~~--~~~~Lvl~ 75 (512)
|.+....|-.... +-..+ ..--|.|||.+++.++..+ +++|++|=
T Consensus 15 ~~~~~~~~~~~~~-~vI~v~s~kGGvGKTT~a~~LA~~la~g~~VlliD 62 (267)
T 3k9g_A 15 QTQGPGSMDNKKP-KIITIASIKGGVGKSTSAIILATLLSKNNKVLLID 62 (267)
T ss_dssp -----------CC-EEEEECCSSSSSCHHHHHHHHHHHHTTTSCEEEEE
T ss_pred hhcCcccCCCCCC-eEEEEEeCCCCchHHHHHHHHHHHHHCCCCEEEEE
Confidence 4444555433321 22222 3566999999987776443 56777764
No 451
>3la6_A Tyrosine-protein kinase WZC; P-loop protein, nucleotide binding domain, walker A motif, B protein kinase, oligomerization; HET: ADP; 3.20A {Escherichia coli}
Probab=45.58 E-value=18 Score=33.98 Aligned_cols=31 Identities=19% Similarity=0.237 Sum_probs=21.2
Q ss_pred ceEEE-cCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIV-LPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~-~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
-..+. .-.|.|||.+++.++..+ +++||+|=
T Consensus 94 vI~vts~kgG~GKTtva~nLA~~lA~~G~rVLLID 128 (286)
T 3la6_A 94 VLMMTGVSPSIGMTFVCANLAAVISQTNKRVLLID 128 (286)
T ss_dssp EEEEEESSSSSSHHHHHHHHHHHHHTTTCCEEEEE
T ss_pred EEEEECCCCCCcHHHHHHHHHHHHHhCCCCEEEEe
Confidence 33344 456999999988777443 56887774
No 452
>4ddu_A Reverse gyrase; topoisomerase, DNA supercoiling, archaea, helicase, hydrolas; 3.00A {Thermotoga maritima} PDB: 4ddt_A 4ddv_A 4ddw_A 4ddx_A
Probab=45.45 E-value=46 Score=37.79 Aligned_cols=73 Identities=14% Similarity=0.219 Sum_probs=56.3
Q ss_pred cCCCeEEEEecCHHHHHHHHHHhCC--------CceeCCCCHHHHHHHHHHhhCCCCccEEEEeC-CCc---ccccCccc
Q 010367 266 QRGDKIIVFADNLFALTEYAMKLRK--------PMIYGATSHVERTKILQAFKCSRDLNTIFLSK-VGD---NSIDIPEA 333 (512)
Q Consensus 266 ~~g~k~iVf~~~~~~~~~l~~~L~~--------~~i~g~~~~~eR~~il~~F~~~~~~~vlv~t~-~~~---~GlDlp~~ 333 (512)
..+.++||.+++++-+..+++.+.. ..++|+++..+|.+.++.+..+ ..+|+|+|. .+. .-+++..+
T Consensus 119 ~~~~~~Lil~PtreLa~Q~~~~l~~l~~~~i~v~~l~Gg~~~~er~~~~~~l~~g-~~~IlV~Tp~rL~~~l~~l~~~~l 197 (1104)
T 4ddu_A 119 RKGKKSALVFPTVTLVKQTLERLQKLADEKVKIFGFYSSMKKEEKEKFEKSFEED-DYHILVFSTQFVSKNREKLSQKRF 197 (1104)
T ss_dssp TTTCCEEEEESSHHHHHHHHHHHHTTSCTTSCEEEECTTCCTTHHHHHHHHHHTS-CCSEEEEEHHHHHHSHHHHHTSCC
T ss_pred hcCCeEEEEechHHHHHHHHHHHHHhhCCCCeEEEEeCCCCHHHHHHHHHHHhCC-CCCEEEECHHHHHHHHHhhcccCc
Confidence 4678999999999998888877632 3589999988888889999986 789999983 221 12566778
Q ss_pred cEEEEe
Q 010367 334 NVIIQI 339 (512)
Q Consensus 334 ~~vI~~ 339 (512)
++||+-
T Consensus 198 ~~lViD 203 (1104)
T 4ddu_A 198 DFVFVD 203 (1104)
T ss_dssp SEEEES
T ss_pred CEEEEe
Confidence 888874
No 453
>2dfs_A Myosin-5A; myosin-V, inhibited state, cryoelectron tomograp contractIle protein-transport protein complex; 24.00A {Gallus gallus}
Probab=45.36 E-value=16 Score=41.34 Aligned_cols=33 Identities=27% Similarity=0.314 Sum_probs=25.7
Q ss_pred HHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHH
Q 010367 32 KSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 32 ~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i 64 (512)
.|+..|+..+...+.||.++.|+|||..+=.++
T Consensus 145 ~Ay~~m~~~~~~QsIiisGESGAGKTe~~K~i~ 177 (1080)
T 2dfs_A 145 EAYKQMARDERNQSIIVSGESGAGKTVSAKYAM 177 (1080)
T ss_dssp HHHHHHHHHTCCEEEEEECSTTSSHHHHHHHHH
T ss_pred HHHHHHHhcCCCcEEEEcCCCCCCccchHHHHH
Confidence 667777776655688999999999998865444
No 454
>3tqc_A Pantothenate kinase; biosynthesis of cofactors, prosthetic groups, carriers, TRAN; HET: ADP; 2.30A {Coxiella burnetii}
Probab=45.06 E-value=21 Score=34.36 Aligned_cols=22 Identities=18% Similarity=-0.008 Sum_probs=17.0
Q ss_pred eEEEcCCCCcHHHHHHHHHHhc
Q 010367 46 GIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i~~i~~~ 67 (512)
..|.+|.|+|||..+-.+...+
T Consensus 95 igI~GpsGSGKSTl~~~L~~ll 116 (321)
T 3tqc_A 95 IGIAGSVAVGKSTTSRVLKALL 116 (321)
T ss_dssp EEEECCTTSSHHHHHHHHHHHH
T ss_pred EEEECCCCCCHHHHHHHHHHHh
Confidence 4677999999999876665544
No 455
>3end_A Light-independent protochlorophyllide reductase iron-sulfur ATP-binding protein; BCHL, electron donor, DPOR, Fe protein, nitrogenase; HET: ADP; 1.63A {Rhodobacter sphaeroides 2} PDB: 3fwy_A*
Probab=45.04 E-value=20 Score=33.80 Aligned_cols=32 Identities=19% Similarity=0.178 Sum_probs=22.9
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh---cCCCEEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR---IKKSCLCLA 75 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~---~~~~~Lvl~ 75 (512)
+-..+.+--|.|||.+++.++.. .+++||+|=
T Consensus 42 ~vI~v~~KGGvGKTT~a~nLA~~La~~G~~VlliD 76 (307)
T 3end_A 42 KVFAVYGKGGIGKSTTSSNLSAAFSILGKRVLQIG 76 (307)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred eEEEEECCCCccHHHHHHHHHHHHHHCCCeEEEEe
Confidence 34555578899999998877644 356777774
No 456
>3kjh_A CO dehydrogenase/acetyl-COA synthase complex, accessory protein COOC; Zn-bound dimer, nickel binding protein, ATPase; 1.90A {Carboxydothermus hydrogenoformans} PDB: 3kjg_A* 3kje_A 3kji_A*
Probab=45.01 E-value=14 Score=33.44 Aligned_cols=29 Identities=14% Similarity=0.131 Sum_probs=22.0
Q ss_pred EEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
.+.+.-|.|||.+++.++..+ +++||+|=
T Consensus 4 ~vs~kGGvGKTt~a~~LA~~la~~g~~VlliD 35 (254)
T 3kjh_A 4 AVAGKGGVGKTTVAAGLIKIMASDYDKIYAVD 35 (254)
T ss_dssp EEECSSSHHHHHHHHHHHHHHTTTCSCEEEEE
T ss_pred EEecCCCCCHHHHHHHHHHHHHHCCCeEEEEe
Confidence 347788999999998887654 56777763
No 457
>1znw_A Guanylate kinase, GMP kinase; ATP:GMP-phosphotransferase, TR; 2.10A {Mycobacterium tuberculosis} SCOP: c.37.1.1 PDB: 1znx_A* 1zny_A* 1znz_A* 1s4q_A 1z8f_A
Probab=44.80 E-value=14 Score=32.72 Aligned_cols=23 Identities=30% Similarity=0.252 Sum_probs=18.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-..|.+|.|+|||...-.++...
T Consensus 22 i~~l~GpnGsGKSTLl~~l~gl~ 44 (207)
T 1znw_A 22 VVVLSGPSAVGKSTVVRCLRERI 44 (207)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHS
T ss_pred EEEEECCCCCCHHHHHHHHHhhC
Confidence 67789999999998876666554
No 458
>2f1r_A Molybdopterin-guanine dinucleotide biosynthesis protein B (MOBB); structural genomics, PSI, protein structure initiative; 2.10A {Archaeoglobus fulgidus}
Probab=44.10 E-value=8.3 Score=33.36 Aligned_cols=23 Identities=17% Similarity=-0.006 Sum_probs=18.0
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
...|++++|+|||...-.++..+
T Consensus 4 ~v~IvG~SGsGKSTL~~~L~~~~ 26 (171)
T 2f1r_A 4 ILSIVGTSDSGKTTLITRMMPIL 26 (171)
T ss_dssp EEEEEESCHHHHHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHh
Confidence 45788999999998877666543
No 459
>3zvl_A Bifunctional polynucleotide phosphatase/kinase; hydrolase-transferase complex, base excision repair, BER, non-homologous END-joining, NHEJ; 1.65A {Mus musculus} PDB: 3zvm_A* 3zvn_A* 1yj5_A 3u7e_B* 3u7f_B* 3u7h_B* 3u7g_A*
Probab=44.08 E-value=10 Score=37.98 Aligned_cols=25 Identities=24% Similarity=0.008 Sum_probs=20.0
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
.-.++++++|+|||.++-.++..++
T Consensus 259 ~lIil~G~pGSGKSTla~~L~~~~~ 283 (416)
T 3zvl_A 259 EVVVAVGFPGAGKSTFIQEHLVSAG 283 (416)
T ss_dssp CEEEEESCTTSSHHHHHHHHTGGGT
T ss_pred EEEEEECCCCCCHHHHHHHHHHhcC
Confidence 4577889999999998887776553
No 460
>3vr4_A V-type sodium ATPase catalytic subunit A; V-ATPase, rotary motor, P-loop, hydrolas ATPase, ATP binding; HET: MSE B3P; 2.17A {Enterococcus hirae} PDB: 3vr3_A* 3vr2_A* 3vr5_A 3vr6_A*
Probab=43.57 E-value=29 Score=36.16 Aligned_cols=45 Identities=18% Similarity=0.261 Sum_probs=32.5
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcCCCEEEEE
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIKKSCLCLA 75 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl~ 75 (512)
.++++.++--++.....|.++.|+|||.+...++.....-+.|++
T Consensus 220 irvID~l~PigrGqr~~Ifgg~g~GKT~L~~~ia~~~~~~v~V~~ 264 (600)
T 3vr4_A 220 QRVIDTFFPVTKGGAAAVPGPFGAGKTVVQHQIAKWSDVDLVVYV 264 (600)
T ss_dssp CHHHHHHSCCBTTCEEEEECCTTSCHHHHHHHHHHHSSCSEEEEE
T ss_pred chhhhccCCccCCCEEeeecCCCccHHHHHHHHHhccCCCEEEEE
Confidence 467777654444458899999999999999888776655444443
No 461
>3ice_A Transcription termination factor RHO; transcription, ATPase, hexamer, helicase, RNA, RECA, OB fold ATP-binding, hydrolase; HET: MSE ADP SPD; 2.80A {Escherichia coli k-12} PDB: 1pv4_A 1pvo_A* 1xpo_A* 1xpr_A* 1xpu_A* 2ht1_A
Probab=43.28 E-value=18 Score=35.93 Aligned_cols=41 Identities=27% Similarity=0.330 Sum_probs=29.5
Q ss_pred CcHHHHHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHh
Q 010367 26 PRPYQEKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 26 Lr~yQ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
+-+-=.+++..++--++.....|++|.|+|||.....++..
T Consensus 157 ~~~tGiraID~~~pi~rGQr~~IvG~sG~GKTtLl~~Iar~ 197 (422)
T 3ice_A 157 TEDLTARVLDLASPIGRGQRGLIVAPPKAGKTMLLQNIAQS 197 (422)
T ss_dssp TTHHHHHHHHHHSCCBTTCEEEEECCSSSSHHHHHHHHHHH
T ss_pred cccccceeeeeeeeecCCcEEEEecCCCCChhHHHHHHHHH
Confidence 44455677776655444458999999999999988665543
No 462
>3cwq_A Para family chromosome partitioning protein; alpha-beta protein, structural genomics, PSI-2, protein STRU initiative; HET: ADP; 2.47A {Synechocystis SP}
Probab=42.89 E-value=22 Score=31.49 Aligned_cols=37 Identities=19% Similarity=0.381 Sum_probs=24.3
Q ss_pred EEEcCCCCcHHHHHHHHHHhc---CCCEEEEE--cChhhHHHHH
Q 010367 47 IIVLPCGAGKSLVGVSAACRI---KKSCLCLA--TNAVSVDQWA 85 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~--P~~~L~~Qw~ 85 (512)
+...--|.|||.+++.++..+ + +|+++= |... ...|.
T Consensus 5 v~s~KGGvGKTT~a~~LA~~la~~g-~VlliD~D~q~~-~~~~~ 46 (209)
T 3cwq_A 5 VASFKGGVGKTTTAVHLSAYLALQG-ETLLIDGDPNRS-ATGWG 46 (209)
T ss_dssp EEESSTTSSHHHHHHHHHHHHHTTS-CEEEEEECTTCH-HHHHH
T ss_pred EEcCCCCCcHHHHHHHHHHHHHhcC-CEEEEECCCCCC-HHHHh
Confidence 445678999999988777543 5 777753 4443 33444
No 463
>1goj_A Kinesin, kinesin heavy chain; motor protein, ATPase; HET: ADP; 2.3A {Neurospora crassa} SCOP: c.37.1.9
Probab=42.83 E-value=21 Score=34.88 Aligned_cols=18 Identities=28% Similarity=0.218 Sum_probs=13.6
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 83 tifAYGqTGSGKTyTm~G 100 (355)
T 1goj_A 83 TVFAYGQTGAGKSYTMMG 100 (355)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred eEEEECCCCCCcceEeec
Confidence 344558999999998753
No 464
>1f9v_A Kinesin-like protein KAR3; kinesin-related protein, motor protein, microtubinding proteinbule, contractIle protein; HET: ADP; 1.30A {Saccharomyces cerevisiae} SCOP: c.37.1.9 PDB: 1f9t_A* 1f9w_A* 1f9u_A* 3kar_A*
Probab=42.43 E-value=19 Score=34.96 Aligned_cols=16 Identities=19% Similarity=0.185 Sum_probs=13.0
Q ss_pred eEEEcCCCCcHHHHHH
Q 010367 46 GIIVLPCGAGKSLVGV 61 (512)
Q Consensus 46 ~il~~~tG~GKTl~~i 61 (512)
.+..+.||+|||.+..
T Consensus 88 ifAYGqTGSGKTyTM~ 103 (347)
T 1f9v_A 88 IFAYGQTGSGKTFTML 103 (347)
T ss_dssp EEEECCTTSSHHHHHH
T ss_pred EEEECCCCCCCcEecc
Confidence 3445899999999986
No 465
>3hdt_A Putative kinase; structura genomics, PSI-2, protein structure initiative, midwest CENT structural genomics, MCSG; 2.79A {Clostridium symbiosum atcc 14940}
Probab=42.40 E-value=18 Score=32.74 Aligned_cols=27 Identities=22% Similarity=0.167 Sum_probs=22.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSC 71 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~ 71 (512)
-..|.+++|+|||.++-.++..++-++
T Consensus 16 iI~i~g~~gsGk~~i~~~la~~lg~~~ 42 (223)
T 3hdt_A 16 IITIEREYGSGGRIVGKKLAEELGIHF 42 (223)
T ss_dssp EEEEEECTTSCHHHHHHHHHHHHTCEE
T ss_pred EEEEeCCCCCCHHHHHHHHHHHcCCcE
Confidence 456778999999999999999887553
No 466
>3ea0_A ATPase, para family; alpha-beta-alpha sandwich, structural genomics, PSI-2, prote structure initiative; HET: ATP; 2.20A {Chlorobium tepidum}
Probab=42.24 E-value=20 Score=32.21 Aligned_cols=29 Identities=17% Similarity=0.256 Sum_probs=20.7
Q ss_pred EEEcCCCCcHHHHHHHHHHhc----CCCEEEEE
Q 010367 47 IIVLPCGAGKSLVGVSAACRI----KKSCLCLA 75 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~~----~~~~Lvl~ 75 (512)
+...--|.|||.+++.++..+ +++||+|=
T Consensus 9 v~s~kGGvGKTt~a~~LA~~la~~~g~~VlliD 41 (245)
T 3ea0_A 9 FVSAKGGDGGSCIAANFAFALSQEPDIHVLAVD 41 (245)
T ss_dssp EEESSTTSSHHHHHHHHHHHHTTSTTCCEEEEE
T ss_pred EECCCCCcchHHHHHHHHHHHHhCcCCCEEEEE
Confidence 334567999999988777543 56777764
No 467
>1nij_A Hypothetical protein YJIA; structural genomics, P-loop protein, GTP binding, structure function project, S2F, unknown function; 2.00A {Escherichia coli} SCOP: c.37.1.10 d.237.1.1
Probab=41.84 E-value=17 Score=34.73 Aligned_cols=34 Identities=12% Similarity=-0.005 Sum_probs=25.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc-CCCEEEEEcCh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI-KKSCLCLATNA 78 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~-~~~~Lvl~P~~ 78 (512)
-.+|.++.|+|||...-.++... +.++.||.|..
T Consensus 6 v~~i~G~~GaGKTTll~~l~~~~~~~~~aVi~~d~ 40 (318)
T 1nij_A 6 VTLLTGFLGAGKTTLLRHILNEQHGYKIAVIENEF 40 (318)
T ss_dssp EEEEEESSSSSCHHHHHHHHHSCCCCCEEEECSSC
T ss_pred EEEEEecCCCCHHHHHHHHHhhcCCCcEEEEEecC
Confidence 46889999999997765555443 46888888864
No 468
>1np6_A Molybdopterin-guanine dinucleotide biosynthesis protein B; mixed alpha-beta fold, elongated beta-sheet, walker A motif, P-loop structural motif; 1.90A {Escherichia coli} SCOP: c.37.1.10 PDB: 1p9n_A
Probab=41.78 E-value=16 Score=31.54 Aligned_cols=22 Identities=14% Similarity=-0.073 Sum_probs=17.5
Q ss_pred ceEEEcCCCCcHHHHHHHHHHh
Q 010367 45 SGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~ 66 (512)
-.+++++.|+|||...-.++..
T Consensus 8 ~i~i~G~sGsGKTTl~~~l~~~ 29 (174)
T 1np6_A 8 LLAFAAWSGTGKTTLLKKLIPA 29 (174)
T ss_dssp EEEEECCTTSCHHHHHHHHHHH
T ss_pred EEEEEeCCCCCHHHHHHHHHHh
Confidence 5678999999999887666644
No 469
>3bfn_A Kinesin-like protein KIF22; limited proteolysis, structural genomics consortium domain, ADP, SGC, ATP-binding, DNA-binding, microtubule, MO protein; HET: ADP; 2.30A {Homo sapiens}
Probab=41.76 E-value=22 Score=35.17 Aligned_cols=33 Identities=24% Similarity=0.282 Sum_probs=20.8
Q ss_pred HHHHHHHHHH--------HhCCCCcceEEEcCCCCcHHHHHH
Q 010367 28 PYQEKSLSKM--------FGNGRARSGIIVLPCGAGKSLVGV 61 (512)
Q Consensus 28 ~yQ~~al~~~--------~~~~~~~~~il~~~tG~GKTl~~i 61 (512)
.-|.+.++.. +. |..-..+..+.||+|||.+..
T Consensus 77 ~tQ~~Vy~~~~~plv~~~l~-G~N~tifAYGqTGSGKTyTM~ 117 (388)
T 3bfn_A 77 STQQDIYAGSVQPILRHLLE-GQNASVLAYGPTGAGKTHTML 117 (388)
T ss_dssp CCHHHHHHHHTGGGHHHHTT-TCCEEEEEESCTTSSHHHHHT
T ss_pred CCHhHHHHHHHHHHHHHhhc-CceeeEeeecCCCCCCCeEee
Confidence 3477777642 33 332233445899999999874
No 470
>1x6v_B Bifunctional 3'-phosphoadenosine 5'- phosphosulfate synthethase 1; transferase, ATP sulfurylase, APS kinase, PAPS; HET: ADP; 1.75A {Homo sapiens} SCOP: b.122.1.3 c.26.1.5 c.37.1.4 PDB: 1xjq_B* 1xnj_B* 2qjf_A* 2ofx_A* 2ofw_A*
Probab=41.66 E-value=22 Score=37.54 Aligned_cols=31 Identities=23% Similarity=0.269 Sum_probs=24.5
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
...++.+.+|+|||.++-.+...+ +.+++.+
T Consensus 53 ~lIvLtGlsGSGKSTlAr~La~~L~~~G~~~v~l 86 (630)
T 1x6v_B 53 CTVWLTGLSGAGKTTVSMALEEYLVCHGIPCYTL 86 (630)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred CEEEEEeCCCCCHHHHHHHHHHHHHhcCCeEEEe
Confidence 346788999999999998888776 5566555
No 471
>1s96_A Guanylate kinase, GMP kinase; E.coli, dimer, SAD, transferase; 2.00A {Escherichia coli} SCOP: c.37.1.1 PDB: 2an9_A* 2anb_A* 2anc_A 2f3r_A* 2f3t_A*
Probab=41.64 E-value=19 Score=32.33 Aligned_cols=24 Identities=29% Similarity=0.207 Sum_probs=18.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-.+|++|.|+|||...-.++...
T Consensus 17 ~ii~l~GpsGsGKSTLlk~L~g~~ 40 (219)
T 1s96_A 17 TLYIVSAPSGAGKSSLIQALLKTQ 40 (219)
T ss_dssp CEEEEECCTTSCHHHHHHHHHHHS
T ss_pred cEEEEECCCCCCHHHHHHHHhccC
Confidence 367889999999998866665544
No 472
>1wcv_1 SOJ, segregation protein; ATPase, bacterial, chromosome segregation; 1.6A {Thermus thermophilus} PDB: 2bej_A* 2bek_A*
Probab=41.34 E-value=14 Score=34.00 Aligned_cols=26 Identities=23% Similarity=0.330 Sum_probs=19.6
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 50 LPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 50 ~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
...|.|||.+++.++..+ +++||+|=
T Consensus 14 ~kGGvGKTt~a~~LA~~la~~g~~VlliD 42 (257)
T 1wcv_1 14 QKGGVGKTTTAINLAAYLARLGKRVLLVD 42 (257)
T ss_dssp SSCCHHHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCchHHHHHHHHHHHHHHCCCCEEEEE
Confidence 466999999988777543 56888774
No 473
>2i3b_A HCR-ntpase, human cancer-related ntpase; AAA, rossmann, hydrolase; NMR {Homo sapiens} SCOP: c.37.1.11
Probab=40.71 E-value=19 Score=31.54 Aligned_cols=21 Identities=24% Similarity=0.208 Sum_probs=16.4
Q ss_pred ceEEEcCCCCcHHHHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAAC 65 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~ 65 (512)
...|.+|.|+|||...-.++.
T Consensus 3 ~i~i~G~nG~GKTTll~~l~g 23 (189)
T 2i3b_A 3 HVFLTGPPGVGKTTLIHKASE 23 (189)
T ss_dssp CEEEESCCSSCHHHHHHHHHH
T ss_pred EEEEECCCCChHHHHHHHHHh
Confidence 567899999999987655553
No 474
>2xj4_A MIPZ; replication, cell division, ATPase, WACA; 1.60A {Caulobacter vibrioides} PDB: 2xj9_A* 2xit_A
Probab=40.45 E-value=18 Score=33.87 Aligned_cols=26 Identities=23% Similarity=0.279 Sum_probs=19.4
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 50 LPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 50 ~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
...|.|||.+++.++..+ +++|++|=
T Consensus 12 ~KGGvGKTT~a~nLA~~La~~G~~VlliD 40 (286)
T 2xj4_A 12 EKGGAGKSTIAVHLVTALLYGGAKVAVID 40 (286)
T ss_dssp SSSCTTHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred CCCCCCHHHHHHHHHHHHHHCCCcEEEEE
Confidence 567999999988777543 56777764
No 475
>2afh_E Nitrogenase iron protein 1; nitrogen fixation, iron-sulfur, metal-binding, molybdenum, oxidoreductase; HET: HCA CFN CLF PGE PG4 P6G 1PE; 2.10A {Azotobacter vinelandii} SCOP: c.37.1.10 PDB: 1g1m_A 1g5p_A 1m1y_E* 1m34_E* 1n2c_E* 1nip_A* 1fp6_A* 2afi_E* 2afk_E* 2nip_A 1de0_A 1xcp_A* 1xdb_A 1xd8_A 1xd9_A* 1g20_E* 1g21_E* 2c8v_A* 1rw4_A
Probab=39.71 E-value=24 Score=32.89 Aligned_cols=28 Identities=21% Similarity=0.203 Sum_probs=20.7
Q ss_pred EEEcCCCCcHHHHHHHHHHh---cCCCEEEE
Q 010367 47 IIVLPCGAGKSLVGVSAACR---IKKSCLCL 74 (512)
Q Consensus 47 il~~~tG~GKTl~~i~~i~~---~~~~~Lvl 74 (512)
.++..-|.|||.+++.++.. .+++||+|
T Consensus 6 avs~KGGvGKTT~a~nLA~~La~~G~rVlli 36 (289)
T 2afh_E 6 AIYGKGGIGKSTTTQNLVAALAEMGKKVMIV 36 (289)
T ss_dssp EEEECTTSSHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEeCCCcCcHHHHHHHHHHHHHHCCCeEEEE
Confidence 34678899999998877754 35677765
No 476
>1cp2_A CP2, nitrogenase iron protein; oxidoreductase; 1.93A {Clostridium pasteurianum} SCOP: c.37.1.10
Probab=39.60 E-value=25 Score=32.28 Aligned_cols=27 Identities=22% Similarity=0.238 Sum_probs=20.3
Q ss_pred EEcCCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 48 IVLPCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 48 l~~~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
++..-|.|||.+++.++..+ +++|++|
T Consensus 6 vs~KGGvGKTT~a~nLA~~la~~G~~Vlli 35 (269)
T 1cp2_A 6 IYGKGGIGKSTTTQNLTSGLHAMGKTIMVV 35 (269)
T ss_dssp EEECTTSSHHHHHHHHHHHHHTTTCCEEEE
T ss_pred EecCCCCcHHHHHHHHHHHHHHCCCcEEEE
Confidence 35788999999988777543 5677775
No 477
>3t0q_A AGR253WP; kinesin, alpha and beta proteins, P-loop containing nucleosi triphosphate hydrolases, microtubule motor protein; HET: ADP; 2.35A {Ashbya gossypii}
Probab=39.54 E-value=20 Score=34.86 Aligned_cols=15 Identities=20% Similarity=0.253 Sum_probs=12.5
Q ss_pred EEEcCCCCcHHHHHH
Q 010367 47 IIVLPCGAGKSLVGV 61 (512)
Q Consensus 47 il~~~tG~GKTl~~i 61 (512)
+..+.||+|||.+..
T Consensus 90 fAYGqTGSGKTyTm~ 104 (349)
T 3t0q_A 90 FAYGQTGSGKTYTML 104 (349)
T ss_dssp EEECSTTSSHHHHHH
T ss_pred EEeCCCCCCCceEeC
Confidence 345899999999985
No 478
>3qks_A DNA double-strand break repair RAD50 ATPase; RECA-like fold, coiled-coils, ATPase, exonuclease, endonucle binding, DNA binding; HET: DNA; 2.10A {Pyrococcus furiosus} PDB: 3qkr_A*
Probab=39.35 E-value=18 Score=31.98 Aligned_cols=20 Identities=25% Similarity=0.223 Sum_probs=15.6
Q ss_pred ceEEEcCCCCcHHHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAA 64 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i 64 (512)
-.+|++|.|+|||.+.-++.
T Consensus 25 ~~~I~G~NgsGKStil~ai~ 44 (203)
T 3qks_A 25 INLIIGQNGSGKSSLLDAIL 44 (203)
T ss_dssp EEEEECCTTSSHHHHHHHHH
T ss_pred eEEEEcCCCCCHHHHHHHHH
Confidence 56899999999998744333
No 479
>2axn_A 6-phosphofructo-2-kinase/fructose-2,6- biphosphatase 3 (6PF-2-K/FRU- 2,6-P2ASE brain/placenta-type...; bifunctional enzyme, EDTA complex; HET: F6P EDT ADP; 2.10A {Homo sapiens} PDB: 2dwo_A* 2dwp_A* 2i1v_B* 3qpu_A* 3qpv_A* 3qpw_A*
Probab=38.99 E-value=25 Score=36.25 Aligned_cols=31 Identities=10% Similarity=0.021 Sum_probs=23.8
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
-.++++.+|+|||.++-.++..+ ...+.++.
T Consensus 37 lIvlvGlpGSGKSTia~~La~~L~~~~~d~~v~s 70 (520)
T 2axn_A 37 VIVMVGLPARGKTYISKKLTRYLNWIGVPTKVFN 70 (520)
T ss_dssp EEEEECCTTSSHHHHHHHHHHHHHHTTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeEEec
Confidence 56788999999999998888765 34555554
No 480
>2ius_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- binding, cell division, transmembrane, inner membrane; HET: DNA; 2.7A {Escherichia coli} PDB: 2j5p_A*
Probab=38.87 E-value=18 Score=37.22 Aligned_cols=22 Identities=14% Similarity=0.046 Sum_probs=17.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHH
Q 010367 44 RSGIIVLPCGAGKSLVGVSAAC 65 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~ 65 (512)
.+.+|+++||+|||...-+++.
T Consensus 168 pHlLIaG~TGSGKSt~L~~li~ 189 (512)
T 2ius_A 168 PHLLVAGTTGSGASVGVNAMIL 189 (512)
T ss_dssp CSEEEECCTTSSHHHHHHHHHH
T ss_pred ceEEEECCCCCCHHHHHHHHHH
Confidence 4789999999999987655543
No 481
>3qf7_A RAD50; ABC-ATPase, ATPase, hydrolase; HET: ANP; 1.90A {Thermotoga maritima} PDB: 3qg5_A 3tho_A*
Probab=38.31 E-value=17 Score=35.56 Aligned_cols=16 Identities=38% Similarity=0.382 Sum_probs=13.5
Q ss_pred ceEEEcCCCCcHHHHH
Q 010367 45 SGIIVLPCGAGKSLVG 60 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~ 60 (512)
-.+|.+|+|+|||.+.
T Consensus 25 ~~~i~G~NGaGKTTll 40 (365)
T 3qf7_A 25 ITVVEGPNGAGKSSLF 40 (365)
T ss_dssp EEEEECCTTSSHHHHH
T ss_pred eEEEECCCCCCHHHHH
Confidence 4678999999999763
No 482
>2p6n_A ATP-dependent RNA helicase DDX41; DEAD, structural genomics, structural genomic consortium, SGC, hydrolase; 2.60A {Homo sapiens}
Probab=38.15 E-value=87 Score=27.07 Aligned_cols=65 Identities=17% Similarity=0.186 Sum_probs=47.0
Q ss_pred CCcHHHHHHHHHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccc--------c-cCCCeEEEEch
Q 010367 53 GAGKSLVGVSAACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTTY 121 (512)
Q Consensus 53 G~GKTl~~i~~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~--------~-~~~~~Ivv~T~ 121 (512)
...|....+.++.....++||+|+++.-+......+... ++ .+..++|+.... + .+...|+|+|-
T Consensus 39 ~~~K~~~L~~~l~~~~~~~lVF~~~~~~~~~l~~~L~~~-g~---~~~~lhg~~~~~~R~~~l~~F~~g~~~vLvaT~ 112 (191)
T 2p6n_A 39 EEAKMVYLLECLQKTPPPVLIFAEKKADVDAIHEYLLLK-GV---EAVAIHGGKDQEERTKAIEAFREGKKDVLVATD 112 (191)
T ss_dssp GGGHHHHHHHHHTTSCSCEEEECSCHHHHHHHHHHHHHH-TC---CEEEECTTSCHHHHHHHHHHHHHTSCSEEEECH
T ss_pred hHHHHHHHHHHHHhCCCCEEEEECCHHHHHHHHHHHHHc-CC---cEEEEeCCCCHHHHHHHHHHHhcCCCEEEEEcC
Confidence 457776666666666779999999999888888888765 33 577888874321 1 36678999993
No 483
>2jeo_A Uridine-cytidine kinase 1; UCK, transferase, ATP-binding, nucleoside kinase, nucleotide-binding; 2.50A {Homo sapiens} PDB: 2uvq_A*
Probab=38.13 E-value=20 Score=32.64 Aligned_cols=24 Identities=17% Similarity=-0.116 Sum_probs=18.3
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
-..|.+|.|+|||.++-.++..++
T Consensus 27 iigI~G~~GsGKSTl~k~L~~~lG 50 (245)
T 2jeo_A 27 LIGVSGGTASGKSTVCEKIMELLG 50 (245)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHHT
T ss_pred EEEEECCCCCCHHHHHHHHHHHhc
Confidence 456789999999998776665543
No 484
>2rep_A Kinesin-like protein KIFC1; structural genomics consortium, motor domain, ADP, binding, cell cycle, cell division, endosome, microtubule; HET: ADP; 2.60A {Homo sapiens}
Probab=37.95 E-value=24 Score=34.74 Aligned_cols=18 Identities=17% Similarity=0.106 Sum_probs=13.5
Q ss_pred ceEEEcCCCCcHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVS 62 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~ 62 (512)
..+..+.||+|||.+...
T Consensus 118 tifAYGqTGSGKTyTM~G 135 (376)
T 2rep_A 118 CIFAYGQTGSGKTFTMEG 135 (376)
T ss_dssp EEEEECSTTSSHHHHHTB
T ss_pred EEEEeCCCCCCCceEeec
Confidence 334458999999998753
No 485
>4i1u_A Dephospho-COA kinase; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.05A {Burkholderia vietnamiensis} PDB: 4i1v_A*
Probab=37.78 E-value=23 Score=31.77 Aligned_cols=24 Identities=21% Similarity=0.018 Sum_probs=18.7
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCC
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKK 69 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~ 69 (512)
..-|.+..|+|||.++-.+.. ++-
T Consensus 11 ~iglTGgigsGKStv~~~l~~-~g~ 34 (210)
T 4i1u_A 11 AIGLTGGIGSGKTTVADLFAA-RGA 34 (210)
T ss_dssp EEEEECCTTSCHHHHHHHHHH-TTC
T ss_pred EEEEECCCCCCHHHHHHHHHH-CCC
Confidence 456789999999999887765 543
No 486
>3of5_A Dethiobiotin synthetase; structural genomics, center for structural genomics of infec diseases, csgid, ligase; 1.52A {Francisella tularensis subsp}
Probab=36.70 E-value=32 Score=31.02 Aligned_cols=30 Identities=20% Similarity=0.245 Sum_probs=20.2
Q ss_pred ceEEEc-CCCCcHHHHHHHHHHhc---CCCEEEE
Q 010367 45 SGIIVL-PCGAGKSLVGVSAACRI---KKSCLCL 74 (512)
Q Consensus 45 ~~il~~-~tG~GKTl~~i~~i~~~---~~~~Lvl 74 (512)
..+|.+ .||+|||.+++.++..+ +.++.+.
T Consensus 6 ~i~Itgt~t~vGKT~vt~~L~~~l~~~G~~V~~~ 39 (228)
T 3of5_A 6 KFFIIGTDTEVGKTYISTKLIEVCEHQNIKSLCL 39 (228)
T ss_dssp EEEEEESSSSSCHHHHHHHHHHHHHHTTCCEEEE
T ss_pred EEEEEeCCCCCCHHHHHHHHHHHHHHCCCeeEEe
Confidence 344454 58999999988877544 3455554
No 487
>4edh_A DTMP kinase, thymidylate kinase; structural genomics, PSI-biology; HET: TMP ADP; 1.32A {Pseudomonas aeruginosa PAO1} PDB: 4e5u_A* 4esh_A* 4gmd_A* 3uwk_A* 3uwo_A* 3uxm_A*
Probab=36.37 E-value=22 Score=31.85 Aligned_cols=23 Identities=35% Similarity=0.173 Sum_probs=18.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-.++.++.|+|||.++-.+...+
T Consensus 8 ~i~~eG~~gsGKsT~~~~l~~~l 30 (213)
T 4edh_A 8 FVTLEGPEGAGKSTNRDYLAERL 30 (213)
T ss_dssp EEEEECSTTSSHHHHHHHHHHHH
T ss_pred EEEEEcCCCCCHHHHHHHHHHHH
Confidence 45677999999999887766554
No 488
>1g8f_A Sulfate adenylyltransferase; alpha-beta protein, beta-barrel, rossmann-fold, kinase fold; 1.95A {Saccharomyces cerevisiae} SCOP: b.122.1.3 c.26.1.5 c.37.1.15 PDB: 1g8g_A* 1g8h_A* 1j70_A 1jec_A 1jed_A* 1jee_A*
Probab=36.28 E-value=34 Score=35.19 Aligned_cols=42 Identities=10% Similarity=-0.025 Sum_probs=27.7
Q ss_pred cHHHHHHHHHHHh--CCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 27 RPYQEKSLSKMFG--NGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 27 r~yQ~~al~~~~~--~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
+|.=.+.+...+. .......++.+.+|+|||.++-.++.+++
T Consensus 377 rpeV~~vLr~~~~~~~~~~~~I~l~GlsGsGKSTIa~~La~~L~ 420 (511)
T 1g8f_A 377 YPEVVKILRESNPPRPKQGFSIVLGNSLTVSREQLSIALLSTFL 420 (511)
T ss_dssp CHHHHHHHHHHSCCGGGCCEEEEECTTCCSCHHHHHHHHHHHHT
T ss_pred ChhhHHHHHHhcccccccceEEEecccCCCCHHHHHHHHHHHHH
Confidence 3443444554442 11223566778999999999999998876
No 489
>3ld9_A DTMP kinase, thymidylate kinase; ssgcid, NIH, niaid, SBRI, UW, emerald biostructures, ehrlich chaffeensis; 2.15A {Ehrlichia chaffeensis}
Probab=36.11 E-value=25 Score=31.80 Aligned_cols=24 Identities=17% Similarity=-0.122 Sum_probs=17.8
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-.++.++.|+|||.++-.+...+
T Consensus 22 ~~i~~~G~~g~GKst~~~~l~~~l 45 (223)
T 3ld9_A 22 MFITFEGIDGSGKTTQSHLLAEYL 45 (223)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHH
T ss_pred eEEEEECCCCCCHHHHHHHHHHHH
Confidence 456677999999998876665443
No 490
>2iut_A DNA translocase FTSK; nucleotide-binding, chromosome partition, ATP-binding, DNA- cell division, DNA translocation, KOPS, membrane; HET: DNA SAP; 2.25A {Pseudomonas aeruginosa} PDB: 2iuu_A*
Probab=36.05 E-value=21 Score=37.28 Aligned_cols=23 Identities=17% Similarity=0.088 Sum_probs=18.6
Q ss_pred cceEEEcCCCCcHHHHHHHHHHh
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACR 66 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~ 66 (512)
.+.+|++.||+|||...-+++..
T Consensus 215 pHlLIaG~TGSGKS~~L~tlI~s 237 (574)
T 2iut_A 215 PHLLVAGTTGSGKSVGVNAMLLS 237 (574)
T ss_dssp CCEEEECCTTSSHHHHHHHHHHH
T ss_pred CeeEEECCCCCCHHHHHHHHHHH
Confidence 47899999999999886665543
No 491
>2dyk_A GTP-binding protein; GTPase, ribosome-binding protein, structural genomics; HET: GDP; 1.96A {Thermus thermophilus}
Probab=36.05 E-value=21 Score=29.27 Aligned_cols=21 Identities=24% Similarity=-0.024 Sum_probs=16.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHH
Q 010367 45 SGIIVLPCGAGKSLVGVSAAC 65 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~ 65 (512)
..++.+++|+|||...-.++.
T Consensus 3 ki~v~G~~~~GKSsli~~l~~ 23 (161)
T 2dyk_A 3 KVVIVGRPNVGKSSLFNRLLK 23 (161)
T ss_dssp EEEEECCTTSSHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHhC
Confidence 578999999999977665553
No 492
>2vp4_A Deoxynucleoside kinase; ATP-binding, DNA synthesis, phosphoprotein, feedback inhibition, deoxyribonucleoside kinase, salvage pathway; HET: DCP; 2.20A {Drosophila melanogaster} SCOP: c.37.1.1 PDB: 1j90_A* 2jj8_A* 2vp2_A* 1oe0_A* 2vp5_A* 2vp6_A* 2vp9_A* 2vpp_A* 2vqs_A* 2vp0_A* 1ot3_A* 2jcs_A* 1zm7_A* 1zmx_A*
Probab=35.96 E-value=19 Score=32.40 Aligned_cols=29 Identities=21% Similarity=0.048 Sum_probs=19.2
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcCCCEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIKKSCLCL 74 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~~~~Lvl 74 (512)
-..|.++.|+|||.+.-.++.. .+.+.+.
T Consensus 22 ~i~i~G~~GsGKSTl~~~L~~~-~g~v~~~ 50 (230)
T 2vp4_A 22 TVLIEGNIGSGKTTYLNHFEKY-KNDICLL 50 (230)
T ss_dssp EEEEECSTTSCHHHHHHTTGGG-TTTEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHhc-cCCeEEE
Confidence 4567799999999876554443 4444443
No 493
>2jgn_A DBX, DDX3, ATP-dependent RNA helicase DDX3X; phosphorylation, nucleotide-binding, hydrolase, RNA-binding, ATP-binding, DNA-binding, nuclear protein; 1.91A {Homo sapiens}
Probab=35.76 E-value=1.6e+02 Score=25.03 Aligned_cols=64 Identities=14% Similarity=0.101 Sum_probs=42.4
Q ss_pred CCcHHHHHHHHHHhc--CCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCcccc--------c-cCCCeEEEEc
Q 010367 53 GAGKSLVGVSAACRI--KKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKER--------F-RGNAGVVVTT 120 (512)
Q Consensus 53 G~GKTl~~i~~i~~~--~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~--------~-~~~~~Ivv~T 120 (512)
...|--..+.++... ..++||+|+++.-+......+... + ..+..++|+.... + .+...|+|+|
T Consensus 29 ~~~K~~~L~~ll~~~~~~~k~lVF~~~~~~~~~l~~~L~~~-g---~~~~~lhg~~~~~~r~~~~~~f~~g~~~vLvaT 103 (185)
T 2jgn_A 29 ESDKRSFLLDLLNATGKDSLTLVFVETKKGADSLEDFLYHE-G---YACTSIHGDRSQRDREEALHQFRSGKSPILVAT 103 (185)
T ss_dssp GGGHHHHHHHHHHHC-CCSCEEEEESCHHHHHHHHHHHHHT-T---CCEEEEC--------CHHHHHHHHTSSSEEEEE
T ss_pred cHHHHHHHHHHHHhcCCCCeEEEEECCHHHHHHHHHHHHHc-C---CceEEEeCCCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 567776666666665 468999999999888777777763 3 3577788764321 1 3667899988
No 494
>1htw_A HI0065; nucleotide-binding fold, structural genomics, structure 2 function project, S2F, unknown function; HET: ADP; 1.70A {Haemophilus influenzae} SCOP: c.37.1.18 PDB: 1fl9_A
Probab=35.63 E-value=26 Score=29.61 Aligned_cols=24 Identities=21% Similarity=0.044 Sum_probs=17.7
Q ss_pred cceEEEcCCCCcHHHHHHHHHHhc
Q 010367 44 RSGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 44 ~~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
.-..|.+|.|+|||...-.++..+
T Consensus 34 e~v~L~G~nGaGKTTLlr~l~g~l 57 (158)
T 1htw_A 34 IMVYLNGDLGAGKTTLTRGMLQGI 57 (158)
T ss_dssp EEEEEECSTTSSHHHHHHHHHHHT
T ss_pred CEEEEECCCCCCHHHHHHHHHHhC
Confidence 356788999999998765555443
No 495
>1yks_A Genome polyprotein [contains: flavivirin protease NS3 catalytic subunit]; helicase, flavivirus, DEAD-BOX, ATPase, rtpase, hydrolase; 1.80A {Yellow fever virus} SCOP: c.37.1.14 c.37.1.14 PDB: 1ymf_A*
Probab=35.13 E-value=52 Score=32.93 Aligned_cols=55 Identities=9% Similarity=0.036 Sum_probs=39.7
Q ss_pred HHHhcCCCEEEEEcChhhHHHHHHHHHHhhCCCCCcEEEEcCCccccc-----cCCCeEEEEch
Q 010367 63 AACRIKKSCLCLATNAVSVDQWAFQFKLWSTIQDDQICRFTSDSKERF-----RGNAGVVVTTY 121 (512)
Q Consensus 63 ~i~~~~~~~Lvl~P~~~L~~Qw~~~~~~~~~~~~~~v~~~~~~~~~~~-----~~~~~Ivv~T~ 121 (512)
.+...++++||+||++.-+....+.+... + ..+..++|..++.. .+...|+|+|-
T Consensus 172 ~l~~~~~~~lVF~~s~~~a~~l~~~L~~~-~---~~v~~lhg~~R~~~~~~F~~g~~~vLVaT~ 231 (440)
T 1yks_A 172 WILADKRPTAWFLPSIRAANVMAASLRKA-G---KSVVVLNRKTFEREYPTIKQKKPDFILATD 231 (440)
T ss_dssp HHHHCCSCEEEECSCHHHHHHHHHHHHHT-T---CCEEECCSSSCC--------CCCSEEEESS
T ss_pred HHHhcCCCEEEEeCCHHHHHHHHHHHHHc-C---CCEEEecchhHHHHHhhhcCCCceEEEECC
Confidence 33445679999999999888888888875 2 36888888544322 36788999994
No 496
>3v9p_A DTMP kinase, thymidylate kinase; ssgcid, STRU genomics, seattle structural genomics center for infectious transferase; 1.90A {Burkholderia thailandensis}
Probab=34.81 E-value=31 Score=31.19 Aligned_cols=23 Identities=22% Similarity=-0.123 Sum_probs=15.6
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhc
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRI 67 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~ 67 (512)
-.++.++.|+|||.++-.++..+
T Consensus 27 ~I~~eG~~GsGKsT~~~~l~~~l 49 (227)
T 3v9p_A 27 FITFEGIDGAGKTTHLQWFCDRL 49 (227)
T ss_dssp EEEEECCC---CHHHHHHHHHHH
T ss_pred EEEEECCCCCCHHHHHHHHHHHH
Confidence 56777999999999987776554
No 497
>3fkq_A NTRC-like two-domain protein; RER070207001320, structural GE joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: ATP 2PE; 2.10A {Eubacterium rectale}
Probab=34.52 E-value=29 Score=33.87 Aligned_cols=26 Identities=27% Similarity=0.238 Sum_probs=20.3
Q ss_pred cCCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 50 LPCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 50 ~~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
+--|.|||.+++.++..+ +++||+|=
T Consensus 151 ~KGGvGKTT~a~nLA~~La~~g~rVlliD 179 (373)
T 3fkq_A 151 PCGGVGTSTVAAACAIAHANMGKKVFYLN 179 (373)
T ss_dssp SSTTSSHHHHHHHHHHHHHHHTCCEEEEE
T ss_pred CCCCChHHHHHHHHHHHHHhCCCCEEEEE
Confidence 577999999988777543 67888876
No 498
>2dpy_A FLII, flagellum-specific ATP synthase; beta barrel, alpha-beta structure, hydrolase; HET: ADP; 2.40A {Salmonella typhimurium}
Probab=34.49 E-value=49 Score=33.20 Aligned_cols=38 Identities=18% Similarity=0.221 Sum_probs=26.6
Q ss_pred HHHHHHHHhCCCCcceEEEcCCCCcHHHHHHHHHHhcC
Q 010367 31 EKSLSKMFGNGRARSGIIVLPCGAGKSLVGVSAACRIK 68 (512)
Q Consensus 31 ~~al~~~~~~~~~~~~il~~~tG~GKTl~~i~~i~~~~ 68 (512)
..+++.++.-++.....|.+|.|+|||...-.++....
T Consensus 145 ~~vld~vl~i~~Gq~~~IvG~sGsGKSTLl~~Iag~~~ 182 (438)
T 2dpy_A 145 VRAINALLTVGRGQRMGLFAGSGVGKSVLLGMMARYTR 182 (438)
T ss_dssp CHHHHHHSCCBTTCEEEEEECTTSSHHHHHHHHHHHSC
T ss_pred ceEEeeeEEecCCCEEEEECCCCCCHHHHHHHHhcccC
Confidence 46888775434445778999999999988555554443
No 499
>1a7j_A Phosphoribulokinase; transferase, calvin cycle; 2.50A {Rhodobacter sphaeroides} SCOP: c.37.1.6
Probab=34.36 E-value=15 Score=34.60 Aligned_cols=31 Identities=16% Similarity=0.103 Sum_probs=18.9
Q ss_pred ceEEEcCCCCcHHHHHHHHHHhcC---CCEEEEE
Q 010367 45 SGIIVLPCGAGKSLVGVSAACRIK---KSCLCLA 75 (512)
Q Consensus 45 ~~il~~~tG~GKTl~~i~~i~~~~---~~~Lvl~ 75 (512)
-..|.+|.|+|||.++-.+...++ ..+.+|.
T Consensus 7 iIgItG~sGSGKSTva~~L~~~lg~~~~~~~vI~ 40 (290)
T 1a7j_A 7 IISVTGSSGAGTSTVKHTFDQIFRREGVKAVSIE 40 (290)
T ss_dssp EEEEESCC---CCTHHHHHHHHHHHHTCCEEEEE
T ss_pred EEEEECCCCCCHHHHHHHHHHHHhhcCCCeeEee
Confidence 356789999999999877776543 2344444
No 500
>3qxc_A Dethiobiotin synthetase; DTBS, structural genomics, ATP BIND biology, protein structure initiative, midwest center for S genomics, MCSG; HET: ATP; 1.34A {Helicobacter pylori} PDB: 3mle_A* 3qxh_A* 3qxj_A* 3qxs_A* 3qxx_A* 3qy0_A* 2qmo_A
Probab=34.24 E-value=38 Score=30.96 Aligned_cols=31 Identities=19% Similarity=0.028 Sum_probs=21.0
Q ss_pred ceEEEc-CCCCcHHHHHHHHHHhc---CCCEEEEE
Q 010367 45 SGIIVL-PCGAGKSLVGVSAACRI---KKSCLCLA 75 (512)
Q Consensus 45 ~~il~~-~tG~GKTl~~i~~i~~~---~~~~Lvl~ 75 (512)
..+|.+ .||+|||.+++.++..+ +.++.++=
T Consensus 23 ~i~ItgT~t~vGKT~vs~gL~~~L~~~G~~V~~fK 57 (242)
T 3qxc_A 23 MLFISATNTNAGKTTCARLLAQYCNACGVKTILLK 57 (242)
T ss_dssp EEEEEESSTTSSHHHHHHHHHHHHHHTTCCEEEEC
T ss_pred EEEEEeCCCCCcHHHHHHHHHHHHHhCCCceEEEe
Confidence 444554 68999999988877544 44565553
Done!