Query 010368
Match_columns 512
No_of_seqs 560 out of 4097
Neff 8.3
Searched_HMMs 46136
Date Thu Mar 28 23:43:09 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010368.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010368hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1764 5'-AMP-activated prote 100.0 2.8E-33 6.1E-38 285.9 27.2 304 175-511 54-359 (381)
2 cd02859 AMPKbeta_GBD_like AMP- 99.9 4.2E-25 9.2E-30 175.8 9.9 79 25-106 1-79 (79)
3 cd02861 E_set_proteins_like E 99.8 2.5E-18 5.4E-23 138.2 9.5 77 26-105 2-81 (82)
4 COG2524 Predicted transcriptio 99.7 3.2E-17 6.9E-22 152.7 13.2 120 372-512 173-292 (294)
5 KOG1616 Protein involved in Sn 99.7 2.2E-17 4.8E-22 162.7 9.6 91 21-111 75-165 (289)
6 COG2524 Predicted transcriptio 99.6 3.7E-15 8.1E-20 139.0 12.1 123 278-428 169-291 (294)
7 cd04641 CBS_pair_28 The CBS do 99.6 2.8E-14 6E-19 123.0 15.2 119 380-509 2-120 (120)
8 COG3448 CBS-domain-containing 99.6 2.8E-14 6.1E-19 135.3 14.2 170 237-429 203-373 (382)
9 COG3448 CBS-domain-containing 99.6 7.6E-15 1.6E-19 139.2 9.5 126 373-511 247-372 (382)
10 cd04603 CBS_pair_KefB_assoc Th 99.6 4.1E-14 8.9E-19 120.3 12.6 110 380-509 2-111 (111)
11 cd04619 CBS_pair_6 The CBS dom 99.5 1.4E-13 2.9E-18 117.6 14.4 111 381-508 3-113 (114)
12 cd04618 CBS_pair_5 The CBS dom 99.5 5.8E-14 1.3E-18 116.9 11.4 95 380-509 2-98 (98)
13 COG3620 Predicted transcriptio 99.5 1.3E-13 2.7E-18 119.6 12.9 118 374-512 68-185 (187)
14 cd04617 CBS_pair_4 The CBS dom 99.5 2.6E-13 5.7E-18 116.5 14.5 113 380-508 2-117 (118)
15 PRK10892 D-arabinose 5-phospha 99.5 2E-13 4.3E-18 138.9 14.0 119 372-509 203-323 (326)
16 cd04593 CBS_pair_EriC_assoc_ba 99.5 6.7E-13 1.4E-17 113.2 14.7 112 380-509 2-115 (115)
17 cd04608 CBS_pair_PALP_assoc Th 99.5 2.3E-13 4.9E-18 118.4 11.8 113 380-510 3-124 (124)
18 TIGR00400 mgtE Mg2+ transporte 99.5 3.3E-13 7.2E-18 142.7 14.1 213 234-509 87-304 (449)
19 cd04630 CBS_pair_17 The CBS do 99.5 1.1E-12 2.4E-17 111.7 14.8 112 380-509 2-114 (114)
20 cd04600 CBS_pair_HPP_assoc Thi 99.5 8.8E-13 1.9E-17 113.9 13.9 117 379-509 2-124 (124)
21 cd04623 CBS_pair_10 The CBS do 99.5 1.7E-12 3.6E-17 109.9 15.0 112 380-509 2-113 (113)
22 cd04801 CBS_pair_M50_like This 99.5 7E-13 1.5E-17 112.9 12.7 111 380-508 2-113 (114)
23 cd04618 CBS_pair_5 The CBS dom 99.5 5.3E-13 1.2E-17 111.1 11.4 97 197-341 1-97 (98)
24 cd04639 CBS_pair_26 The CBS do 99.5 1.3E-12 2.8E-17 110.6 13.6 110 380-509 2-111 (111)
25 cd04605 CBS_pair_MET2_assoc Th 99.5 2.2E-12 4.7E-17 108.9 15.0 108 379-508 2-109 (110)
26 cd04803 CBS_pair_15 The CBS do 99.5 1.8E-12 3.9E-17 111.6 14.2 116 380-509 2-122 (122)
27 PRK11543 gutQ D-arabinose 5-ph 99.5 8E-13 1.7E-17 134.2 13.9 119 372-509 198-318 (321)
28 cd04642 CBS_pair_29 The CBS do 99.4 1.3E-12 2.8E-17 113.6 13.2 124 380-508 2-125 (126)
29 cd04607 CBS_pair_NTP_transfera 99.4 2.8E-12 6E-17 109.0 14.8 110 380-508 3-112 (113)
30 cd04631 CBS_pair_18 The CBS do 99.4 1.7E-12 3.8E-17 112.2 13.6 116 380-509 2-125 (125)
31 cd04615 CBS_pair_2 The CBS dom 99.4 2.6E-12 5.6E-17 109.0 14.2 111 380-508 2-112 (113)
32 cd04614 CBS_pair_1 The CBS dom 99.4 1.8E-12 4E-17 107.3 12.7 95 380-509 2-96 (96)
33 cd04643 CBS_pair_30 The CBS do 99.4 2.7E-12 5.9E-17 109.4 14.1 114 380-509 2-116 (116)
34 PRK15094 magnesium/cobalt effl 99.4 1.4E-12 2.9E-17 130.0 14.0 119 373-512 69-190 (292)
35 cd04596 CBS_pair_DRTGG_assoc T 99.4 1.9E-12 4.1E-17 109.2 12.9 105 380-508 3-107 (108)
36 cd04624 CBS_pair_11 The CBS do 99.4 3.8E-12 8.3E-17 107.8 14.7 110 380-508 2-111 (112)
37 cd04588 CBS_pair_CAP-ED_DUF294 99.4 4.3E-12 9.2E-17 107.2 14.7 108 380-508 2-109 (110)
38 cd04604 CBS_pair_KpsF_GutQ_ass 99.4 3.1E-12 6.7E-17 108.6 13.8 112 380-509 3-114 (114)
39 cd04613 CBS_pair_SpoIVFB_EriC_ 99.4 3.4E-12 7.4E-17 108.2 14.0 112 380-509 2-114 (114)
40 cd04632 CBS_pair_19 The CBS do 99.4 3.5E-12 7.7E-17 111.0 14.2 117 380-509 2-128 (128)
41 cd04626 CBS_pair_13 The CBS do 99.4 4.4E-12 9.5E-17 107.4 14.3 109 380-508 2-110 (111)
42 cd04582 CBS_pair_ABC_OpuCA_ass 99.4 3.3E-12 7.1E-17 107.1 13.4 105 380-509 2-106 (106)
43 cd04627 CBS_pair_14 The CBS do 99.4 2.4E-12 5.1E-17 111.4 12.9 119 380-507 2-121 (123)
44 cd04589 CBS_pair_CAP-ED_DUF294 99.4 5.8E-12 1.3E-16 106.6 15.0 110 380-509 2-111 (111)
45 cd04621 CBS_pair_8 The CBS dom 99.4 4E-12 8.6E-17 112.3 14.5 115 380-509 2-135 (135)
46 cd04629 CBS_pair_16 The CBS do 99.4 2.8E-12 6.1E-17 108.9 13.1 113 380-509 2-114 (114)
47 cd04595 CBS_pair_DHH_polyA_Pol 99.4 5.9E-12 1.3E-16 106.4 14.9 107 380-508 3-109 (110)
48 cd04583 CBS_pair_ABC_OpuCA_ass 99.4 5.3E-12 1.2E-16 106.2 14.5 106 380-508 3-108 (109)
49 COG3620 Predicted transcriptio 99.4 1.7E-12 3.7E-17 112.6 11.4 119 283-429 67-185 (187)
50 cd04590 CBS_pair_CorC_HlyC_ass 99.4 6.1E-12 1.3E-16 106.4 14.6 108 380-508 2-110 (111)
51 cd04635 CBS_pair_22 The CBS do 99.4 3.4E-12 7.4E-17 109.9 13.1 116 380-509 2-122 (122)
52 PRK07807 inosine 5-monophospha 99.4 2.3E-12 5E-17 136.0 14.3 114 373-510 91-204 (479)
53 cd04620 CBS_pair_7 The CBS dom 99.4 5.3E-12 1.2E-16 107.5 13.9 110 380-508 2-114 (115)
54 cd04636 CBS_pair_23 The CBS do 99.4 5.3E-12 1.1E-16 110.7 13.9 115 380-509 2-132 (132)
55 COG2905 Predicted signal-trans 99.4 1.5E-12 3.3E-17 134.0 11.8 120 371-510 149-269 (610)
56 cd04586 CBS_pair_BON_assoc Thi 99.4 3.6E-12 7.9E-17 112.1 12.5 115 380-509 3-135 (135)
57 cd04641 CBS_pair_28 The CBS do 99.4 5.5E-12 1.2E-16 108.5 13.3 119 289-425 1-119 (120)
58 cd04611 CBS_pair_PAS_GGDEF_DUF 99.4 8.7E-12 1.9E-16 105.2 14.3 109 380-508 2-110 (111)
59 cd04640 CBS_pair_27 The CBS do 99.4 3.9E-12 8.4E-17 110.6 12.3 112 380-508 2-125 (126)
60 KOG1764 5'-AMP-activated prote 99.4 1.7E-11 3.7E-16 125.9 18.9 197 199-430 164-361 (381)
61 cd04800 CBS_pair_CAP-ED_DUF294 99.4 1.1E-11 2.5E-16 104.7 14.7 109 380-508 2-110 (111)
62 PRK14869 putative manganese-de 99.4 1E-11 2.2E-16 135.1 17.9 194 286-509 73-302 (546)
63 cd04612 CBS_pair_SpoIVFB_EriC_ 99.4 1E-11 2.2E-16 104.8 14.0 110 380-509 2-111 (111)
64 cd04625 CBS_pair_12 The CBS do 99.4 1.5E-11 3.2E-16 104.2 14.8 111 380-509 2-112 (112)
65 cd04587 CBS_pair_CAP-ED_DUF294 99.4 8.3E-12 1.8E-16 105.8 13.1 111 380-508 2-112 (113)
66 cd04585 CBS_pair_ACT_assoc2 Th 99.4 1.1E-11 2.5E-16 106.2 13.5 115 380-509 2-122 (122)
67 cd04622 CBS_pair_9 The CBS dom 99.4 1.4E-11 3.1E-16 104.4 13.9 111 380-509 2-113 (113)
68 cd04602 CBS_pair_IMPDH_2 This 99.4 1.2E-11 2.5E-16 105.5 13.2 106 380-508 3-113 (114)
69 cd04601 CBS_pair_IMPDH This cd 99.4 7.7E-12 1.7E-16 105.4 11.8 106 380-508 3-109 (110)
70 cd04633 CBS_pair_20 The CBS do 99.4 1.1E-11 2.3E-16 106.6 12.8 114 380-509 2-121 (121)
71 cd04627 CBS_pair_14 The CBS do 99.4 1.4E-11 3E-16 106.6 13.5 120 290-424 2-121 (123)
72 TIGR03520 GldE gliding motilit 99.4 8.8E-12 1.9E-16 130.1 14.6 118 372-512 192-312 (408)
73 PRK01862 putative voltage-gate 99.4 6.5E-12 1.4E-16 137.3 14.2 122 372-511 448-571 (574)
74 cd04606 CBS_pair_Mg_transporte 99.4 8.1E-12 1.8E-16 105.5 11.6 103 384-510 2-109 (109)
75 cd04637 CBS_pair_24 The CBS do 99.3 1.7E-11 3.6E-16 105.6 13.4 115 380-509 2-122 (122)
76 cd04609 CBS_pair_PALP_assoc2 T 99.3 2.3E-11 4.9E-16 102.4 13.6 109 380-509 2-110 (110)
77 cd04619 CBS_pair_6 The CBS dom 99.3 2.3E-11 4.9E-16 103.7 13.5 111 291-425 3-113 (114)
78 cd04802 CBS_pair_3 The CBS dom 99.3 3.9E-11 8.5E-16 101.6 14.7 110 380-508 2-111 (112)
79 cd04603 CBS_pair_KefB_assoc Th 99.3 2.2E-11 4.7E-16 103.4 12.9 109 290-425 2-110 (111)
80 cd04599 CBS_pair_GGDEF_assoc2 99.3 2.5E-11 5.5E-16 101.4 13.1 103 380-508 2-104 (105)
81 PRK14869 putative manganese-de 99.3 1E-11 2.2E-16 135.0 13.3 284 187-509 68-391 (546)
82 cd04610 CBS_pair_ParBc_assoc T 99.3 2.2E-11 4.8E-16 102.1 12.2 105 380-509 3-107 (107)
83 cd04584 CBS_pair_ACT_assoc Thi 99.3 4.1E-11 8.8E-16 102.9 14.2 114 380-508 2-120 (121)
84 cd02205 CBS_pair The CBS domai 99.3 6.5E-11 1.4E-15 99.2 14.5 112 380-509 2-113 (113)
85 cd04617 CBS_pair_4 The CBS dom 99.3 2.8E-11 6.2E-16 103.8 12.4 111 290-425 2-117 (118)
86 PRK05567 inosine 5'-monophosph 99.3 2.6E-11 5.7E-16 129.4 14.8 220 223-509 42-265 (486)
87 cd04594 CBS_pair_EriC_assoc_ar 99.3 3.8E-11 8.1E-16 100.6 12.6 100 382-508 4-103 (104)
88 PLN02274 inosine-5'-monophosph 99.3 3.4E-11 7.4E-16 128.1 15.0 113 377-510 106-221 (505)
89 cd04600 CBS_pair_HPP_assoc Thi 99.3 4.6E-11 9.9E-16 103.1 13.2 122 289-425 2-123 (124)
90 PRK07107 inosine 5-monophospha 99.3 1.7E-11 3.8E-16 130.1 12.6 109 381-509 107-218 (502)
91 cd04630 CBS_pair_17 The CBS do 99.3 6.3E-11 1.4E-15 100.9 13.7 112 290-425 2-113 (114)
92 TIGR01302 IMP_dehydrog inosine 99.3 3.2E-11 6.9E-16 127.5 14.4 113 375-510 84-200 (450)
93 COG0517 FOG: CBS domain [Gener 99.3 1.1E-10 2.3E-15 99.5 14.6 111 377-507 5-117 (117)
94 PRK07807 inosine 5-monophospha 99.3 2.3E-10 5.1E-15 120.8 19.8 159 285-496 93-251 (479)
95 cd04605 CBS_pair_MET2_assoc Th 99.3 1E-10 2.3E-15 98.6 13.9 108 289-425 2-109 (110)
96 PRK05567 inosine 5'-monophosph 99.3 4.6E-11 1E-15 127.5 14.3 114 374-510 90-204 (486)
97 TIGR01303 IMP_DH_rel_1 IMP deh 99.3 3.9E-11 8.5E-16 126.6 13.4 111 375-510 92-202 (475)
98 cd04607 CBS_pair_NTP_transfera 99.3 1E-10 2.2E-15 99.3 13.7 109 291-425 4-112 (113)
99 cd04591 CBS_pair_EriC_assoc_eu 99.3 6.9E-11 1.5E-15 99.5 12.4 100 380-509 3-105 (105)
100 cd04624 CBS_pair_11 The CBS do 99.3 1.2E-10 2.6E-15 98.5 13.8 110 290-425 2-111 (112)
101 cd04623 CBS_pair_10 The CBS do 99.3 1.3E-10 2.8E-15 98.3 13.9 111 290-425 2-112 (113)
102 TIGR00400 mgtE Mg2+ transporte 99.3 3.8E-11 8.3E-16 127.1 12.9 116 372-511 132-252 (449)
103 TIGR00393 kpsF KpsF/GutQ famil 99.3 4.5E-11 9.8E-16 118.2 12.4 112 372-502 156-268 (268)
104 cd04598 CBS_pair_GGDEF_assoc T 99.3 1E-10 2.2E-15 100.2 13.0 113 380-508 2-118 (119)
105 cd04638 CBS_pair_25 The CBS do 99.2 1.5E-10 3.3E-15 97.0 13.6 104 380-508 2-105 (106)
106 cd04634 CBS_pair_21 The CBS do 99.2 1.4E-10 3.1E-15 103.3 14.0 113 380-508 2-142 (143)
107 cd04639 CBS_pair_26 The CBS do 99.2 1.1E-10 2.4E-15 98.6 12.6 109 290-425 2-110 (111)
108 cd04642 CBS_pair_29 The CBS do 99.2 1.5E-10 3.3E-15 100.5 13.1 124 290-425 2-125 (126)
109 TIGR01303 IMP_DH_rel_1 IMP deh 99.2 4.3E-10 9.4E-15 118.7 19.0 112 286-429 93-204 (475)
110 COG2239 MgtE Mg/Co/Ni transpor 99.2 7.9E-11 1.7E-15 122.5 13.1 162 235-430 89-255 (451)
111 cd04614 CBS_pair_1 The CBS dom 99.2 1.9E-10 4.1E-15 95.2 13.0 94 290-425 2-95 (96)
112 cd04593 CBS_pair_EriC_assoc_ba 99.2 2.1E-10 4.5E-15 97.7 13.5 111 290-425 2-114 (115)
113 cd04803 CBS_pair_15 The CBS do 99.2 1.8E-10 3.9E-15 99.0 13.1 120 290-425 2-121 (122)
114 PTZ00314 inosine-5'-monophosph 99.2 9.2E-11 2E-15 124.8 13.6 113 377-510 102-217 (495)
115 cd04643 CBS_pair_30 The CBS do 99.2 1.7E-10 3.6E-15 98.2 12.6 114 290-425 2-115 (116)
116 cd04631 CBS_pair_18 The CBS do 99.2 1.6E-10 3.4E-15 99.9 12.6 124 289-425 1-124 (125)
117 cd04608 CBS_pair_PALP_assoc Th 99.2 6.3E-11 1.4E-15 102.9 9.9 113 289-426 2-123 (124)
118 cd04582 CBS_pair_ABC_OpuCA_ass 99.2 2.3E-10 5E-15 95.8 13.0 104 290-425 2-105 (106)
119 cd04611 CBS_pair_PAS_GGDEF_DUF 99.2 2.9E-10 6.4E-15 95.8 13.5 109 290-425 2-110 (111)
120 cd04588 CBS_pair_CAP-ED_DUF294 99.2 3.5E-10 7.6E-15 95.3 13.7 109 289-425 1-109 (110)
121 cd04620 CBS_pair_7 The CBS dom 99.2 2.9E-10 6.3E-15 96.7 13.3 110 290-425 2-114 (115)
122 cd04583 CBS_pair_ABC_OpuCA_ass 99.2 3.6E-10 7.9E-15 94.9 13.6 107 289-425 2-108 (109)
123 PRK15094 magnesium/cobalt effl 99.2 6.6E-10 1.4E-14 110.8 17.5 161 279-479 65-227 (292)
124 COG4109 Predicted transcriptio 99.2 7.8E-11 1.7E-15 114.8 10.4 116 372-511 189-306 (432)
125 cd04801 CBS_pair_M50_like This 99.2 2E-10 4.3E-15 97.7 11.9 110 289-425 1-113 (114)
126 TIGR03520 GldE gliding motilit 99.2 8.2E-10 1.8E-14 115.3 18.9 161 278-481 188-350 (408)
127 PRK11543 gutQ D-arabinose 5-ph 99.2 1.3E-10 2.9E-15 118.0 12.7 117 284-426 200-318 (321)
128 cd04590 CBS_pair_CorC_HlyC_ass 99.2 3.4E-10 7.3E-15 95.6 13.2 109 290-425 2-110 (111)
129 cd04585 CBS_pair_ACT_assoc2 Th 99.2 3.3E-10 7.1E-15 97.0 13.3 120 290-425 2-121 (122)
130 cd04629 CBS_pair_16 The CBS do 99.2 2E-10 4.3E-15 97.4 11.8 112 290-425 2-113 (114)
131 cd04626 CBS_pair_13 The CBS do 99.2 2.5E-10 5.5E-15 96.4 12.4 109 290-425 2-110 (111)
132 TIGR01137 cysta_beta cystathio 99.2 2.2E-10 4.8E-15 122.0 14.8 118 372-510 336-453 (454)
133 cd04586 CBS_pair_BON_assoc Thi 99.2 1.6E-10 3.4E-15 101.7 11.5 128 289-425 2-134 (135)
134 cd04596 CBS_pair_DRTGG_assoc T 99.2 2.6E-10 5.6E-15 96.1 12.3 106 289-425 2-107 (108)
135 cd04595 CBS_pair_DHH_polyA_Pol 99.2 3.7E-10 7.9E-15 95.3 13.2 108 289-425 2-109 (110)
136 cd04615 CBS_pair_2 The CBS dom 99.2 3.6E-10 7.9E-15 95.7 13.2 111 290-425 2-112 (113)
137 cd04800 CBS_pair_CAP-ED_DUF294 99.2 3.2E-10 6.9E-15 95.8 12.5 109 290-425 2-110 (111)
138 cd04636 CBS_pair_23 The CBS do 99.2 3E-10 6.4E-15 99.5 12.7 127 290-425 2-131 (132)
139 cd04604 CBS_pair_KpsF_GutQ_ass 99.2 4.5E-10 9.7E-15 95.1 13.1 111 290-425 3-113 (114)
140 cd02858 Esterase_N_term Estera 99.2 1.3E-10 2.8E-15 93.9 9.1 66 27-95 7-74 (85)
141 cd04613 CBS_pair_SpoIVFB_EriC_ 99.2 4.4E-10 9.6E-15 95.1 12.5 111 290-425 2-113 (114)
142 cd04622 CBS_pair_9 The CBS dom 99.2 5.5E-10 1.2E-14 94.5 13.0 110 290-425 2-112 (113)
143 cd04612 CBS_pair_SpoIVFB_EriC_ 99.2 6.3E-10 1.4E-14 93.7 13.4 110 289-425 1-110 (111)
144 cd04633 CBS_pair_20 The CBS do 99.2 3.4E-10 7.3E-15 97.2 11.7 120 289-425 1-120 (121)
145 cd04602 CBS_pair_IMPDH_2 This 99.2 6.1E-10 1.3E-14 94.8 13.2 110 289-425 2-113 (114)
146 cd04587 CBS_pair_CAP-ED_DUF294 99.2 6.7E-10 1.4E-14 94.0 13.3 111 290-425 2-112 (113)
147 PRK10892 D-arabinose 5-phospha 99.2 2.6E-10 5.6E-15 116.1 12.7 117 284-426 205-323 (326)
148 cd04621 CBS_pair_8 The CBS dom 99.2 5.7E-10 1.2E-14 98.4 13.3 129 290-425 2-134 (135)
149 cd04637 CBS_pair_24 The CBS do 99.1 5.4E-10 1.2E-14 96.1 12.4 120 290-425 2-121 (122)
150 cd04632 CBS_pair_19 The CBS do 99.1 8.3E-10 1.8E-14 96.0 13.2 124 290-425 2-127 (128)
151 COG0517 FOG: CBS domain [Gener 99.1 9.7E-10 2.1E-14 93.5 13.4 111 287-424 5-117 (117)
152 cd04625 CBS_pair_12 The CBS do 99.1 1.1E-09 2.4E-14 92.5 13.3 110 290-425 2-111 (112)
153 cd04635 CBS_pair_22 The CBS do 99.1 6.8E-10 1.5E-14 95.4 12.1 120 290-425 2-121 (122)
154 cd04589 CBS_pair_CAP-ED_DUF294 99.1 1.3E-09 2.8E-14 92.1 13.2 109 290-425 2-110 (111)
155 cd04802 CBS_pair_3 The CBS dom 99.1 1.5E-09 3.1E-14 91.8 13.5 110 290-425 2-111 (112)
156 PRK11573 hypothetical protein; 99.1 1E-09 2.2E-14 114.6 14.7 122 372-512 188-312 (413)
157 cd04640 CBS_pair_27 The CBS do 99.1 9.8E-10 2.1E-14 95.4 12.0 115 290-425 2-125 (126)
158 cd04609 CBS_pair_PALP_assoc2 T 99.1 1.3E-09 2.7E-14 91.6 12.0 108 290-425 2-109 (110)
159 cd04592 CBS_pair_EriC_assoc_eu 99.1 1.3E-09 2.8E-14 96.0 12.1 109 380-492 2-117 (133)
160 PLN02274 inosine-5'-monophosph 99.1 1.4E-09 3.1E-14 115.8 14.7 116 287-429 106-223 (505)
161 cd04601 CBS_pair_IMPDH This cd 99.1 1.1E-09 2.4E-14 92.0 11.3 107 289-425 2-109 (110)
162 PRK07107 inosine 5-monophospha 99.1 1.3E-09 2.9E-14 115.8 14.0 110 291-426 107-218 (502)
163 cd04599 CBS_pair_GGDEF_assoc2 99.1 1.8E-09 3.9E-14 90.1 11.8 102 290-424 2-103 (105)
164 cd02205 CBS_pair The CBS domai 99.1 4E-09 8.7E-14 88.1 13.9 111 290-425 2-112 (113)
165 COG2905 Predicted signal-trans 99.1 8.4E-10 1.8E-14 114.1 11.3 120 283-428 151-270 (610)
166 cd04610 CBS_pair_ParBc_assoc T 99.0 4E-09 8.7E-14 88.2 13.1 105 289-425 2-106 (107)
167 cd04584 CBS_pair_ACT_assoc Thi 99.0 3.6E-09 7.8E-14 90.6 12.8 119 290-425 2-120 (121)
168 PTZ00314 inosine-5'-monophosph 99.0 3.1E-09 6.7E-14 113.2 14.6 115 286-427 101-217 (495)
169 cd04634 CBS_pair_21 The CBS do 99.0 3.5E-09 7.6E-14 94.3 12.6 127 289-425 1-142 (143)
170 cd04606 CBS_pair_Mg_transporte 99.0 3.7E-09 7.9E-14 89.1 12.1 102 294-426 2-108 (109)
171 TIGR01302 IMP_dehydrog inosine 99.0 2.9E-09 6.2E-14 112.7 13.7 164 221-427 33-200 (450)
172 PRK01862 putative voltage-gate 99.0 4.5E-09 9.7E-14 115.1 15.4 119 285-428 451-571 (574)
173 cd04594 CBS_pair_EriC_assoc_ar 99.0 5.1E-09 1.1E-13 87.6 12.1 100 292-425 4-103 (104)
174 cd04591 CBS_pair_EriC_assoc_eu 99.0 5.5E-09 1.2E-13 87.8 12.3 100 290-425 3-104 (105)
175 TIGR00393 kpsF KpsF/GutQ famil 99.0 2.7E-09 5.8E-14 105.5 11.3 110 284-419 158-268 (268)
176 cd04598 CBS_pair_GGDEF_assoc T 99.0 6.2E-09 1.3E-13 89.0 11.4 113 290-425 2-118 (119)
177 COG2239 MgtE Mg/Co/Ni transpor 98.9 5.3E-09 1.1E-13 109.0 11.4 116 371-510 132-252 (451)
178 COG1253 TlyC Hemolysins and re 98.9 1.5E-08 3.2E-13 106.8 14.2 117 375-512 210-329 (429)
179 COG4109 Predicted transcriptio 98.9 5.8E-08 1.3E-12 95.1 16.1 109 289-428 198-306 (432)
180 PF00571 CBS: CBS domain CBS d 98.9 6.3E-09 1.4E-13 77.1 6.6 54 458-512 4-57 (57)
181 cd04638 CBS_pair_25 The CBS do 98.9 3.9E-08 8.6E-13 82.2 12.1 104 290-425 2-105 (106)
182 PRK11573 hypothetical protein; 98.8 9.2E-08 2E-12 100.0 17.0 165 185-397 185-349 (413)
183 TIGR01137 cysta_beta cystathio 98.8 3.4E-08 7.4E-13 105.2 12.9 116 284-427 338-453 (454)
184 cd04592 CBS_pair_EriC_assoc_eu 98.8 4.7E-08 1E-12 86.1 11.1 113 290-411 2-118 (133)
185 PF00571 CBS: CBS domain CBS d 98.8 1.5E-08 3.3E-13 75.0 6.2 55 374-428 2-56 (57)
186 TIGR01186 proV glycine betaine 98.8 3.7E-07 8E-12 93.8 17.8 109 379-511 250-358 (363)
187 cd02688 E_set E or "early" set 98.7 4.7E-08 1E-12 78.0 7.5 75 27-103 5-81 (83)
188 COG4536 CorB Putative Mg2+ and 98.7 8.8E-08 1.9E-12 94.8 10.4 121 373-512 202-325 (423)
189 COG4535 CorC Putative Mg2+ and 98.7 6.4E-08 1.4E-12 89.8 8.0 113 379-512 77-190 (293)
190 PRK10070 glycine betaine trans 98.6 5.3E-07 1.2E-11 93.7 13.8 104 384-511 290-393 (400)
191 COG1253 TlyC Hemolysins and re 98.5 4.2E-06 9E-11 88.3 17.1 131 184-349 203-333 (429)
192 cd02854 Glycogen_branching_enz 98.4 9.9E-07 2.1E-11 73.2 8.6 63 28-92 7-83 (99)
193 KOG2550 IMP dehydrogenase/GMP 98.4 8.9E-07 1.9E-11 88.4 8.8 163 221-426 61-226 (503)
194 KOG2550 IMP dehydrogenase/GMP 98.4 5.8E-07 1.3E-11 89.7 7.2 107 380-509 117-226 (503)
195 PF02922 CBM_48: Carbohydrate- 98.3 3.1E-07 6.8E-12 74.0 2.6 57 27-84 12-73 (85)
196 KOG0474 Cl- channel CLC-7 and 98.3 9.9E-07 2.1E-11 92.4 6.6 149 360-509 564-745 (762)
197 TIGR01186 proV glycine betaine 98.3 1.4E-05 3.1E-10 82.1 14.3 111 289-430 250-360 (363)
198 COG4536 CorB Putative Mg2+ and 98.2 2.9E-05 6.3E-10 77.3 13.9 131 185-348 198-328 (423)
199 COG4535 CorC Putative Mg2+ and 98.2 6.2E-05 1.3E-09 70.3 14.3 120 287-433 75-194 (293)
200 PRK10070 glycine betaine trans 98.1 4.7E-05 1E-09 79.3 13.5 107 293-430 289-395 (400)
201 KOG0474 Cl- channel CLC-7 and 97.8 6.9E-05 1.5E-09 78.9 9.1 145 282-427 583-746 (762)
202 cd04597 CBS_pair_DRTGG_assoc2 97.8 4E-05 8.7E-10 65.2 6.0 54 372-425 59-112 (113)
203 cd04597 CBS_pair_DRTGG_assoc2 97.7 7.3E-05 1.6E-09 63.6 6.4 48 460-508 65-112 (113)
204 cd02860 Pullulanase_N_term Pul 97.7 9.9E-05 2.1E-09 61.4 6.9 63 28-94 10-84 (100)
205 smart00116 CBS Domain in cysta 97.7 0.0001 2.2E-09 51.1 5.9 47 463-510 2-48 (49)
206 PF00686 CBM_20: Starch bindin 97.7 0.00011 2.3E-09 60.8 6.1 56 26-81 2-68 (96)
207 cd05814 CBM20_Prei4 Prei4, N-t 97.7 0.0003 6.4E-09 60.7 9.1 49 34-82 13-67 (120)
208 cd02855 Glycogen_branching_enz 97.6 0.00042 9E-09 58.1 9.4 75 28-104 23-104 (106)
209 smart00116 CBS Domain in cysta 97.5 0.00031 6.6E-09 48.6 6.2 47 381-427 2-48 (49)
210 COG0296 GlgB 1,4-alpha-glucan 97.5 0.0002 4.3E-09 77.5 7.1 66 25-92 35-108 (628)
211 cd05808 CBM20_alpha_amylase Al 97.5 0.00044 9.5E-09 56.9 7.6 53 27-81 2-63 (95)
212 KOG0475 Cl- channel CLC-3 and 97.5 0.00099 2.2E-08 70.6 11.4 128 381-510 558-694 (696)
213 PLN02447 1,4-alpha-glucan-bran 97.4 0.00038 8.2E-09 77.2 8.1 63 27-92 115-191 (758)
214 cd05809 CBM20_beta_amylase Bet 97.3 0.0011 2.4E-08 55.0 8.2 57 25-81 2-68 (99)
215 PRK12568 glycogen branching en 97.2 0.00078 1.7E-08 74.6 7.8 63 27-92 139-209 (730)
216 cd05820 CBM20_novamyl Novamyl 97.2 0.0038 8.3E-08 52.2 9.9 64 25-90 2-84 (103)
217 TIGR03415 ABC_choXWV_ATP choli 97.1 0.0055 1.2E-07 63.5 12.4 84 400-512 298-381 (382)
218 cd02852 Isoamylase_N_term Isoa 97.1 0.0015 3.2E-08 56.2 6.9 60 28-89 9-76 (119)
219 cd05818 CBM20_water_dikinase P 97.1 0.0031 6.7E-08 51.6 8.4 53 26-81 2-61 (92)
220 PRK12313 glycogen branching en 97.0 0.0017 3.7E-08 72.1 8.4 65 27-93 39-110 (633)
221 cd02856 Glycogen_debranching_e 97.0 0.0022 4.8E-08 53.6 7.1 53 28-84 11-67 (103)
222 PRK14705 glycogen branching en 97.0 0.0013 2.8E-08 76.6 7.2 63 27-91 639-709 (1224)
223 PRK14706 glycogen branching en 96.9 0.0028 6E-08 70.0 8.4 64 27-93 39-110 (639)
224 cd05811 CBM20_glucoamylase Glu 96.9 0.013 2.7E-07 49.3 10.5 58 24-81 5-73 (106)
225 KOG0475 Cl- channel CLC-3 and 96.8 0.018 3.9E-07 61.4 12.7 134 290-428 557-695 (696)
226 COG4175 ProV ABC-type proline/ 96.7 0.0061 1.3E-07 60.2 8.3 168 288-512 215-384 (386)
227 cd05813 CBM20_genethonin_1 Gen 96.7 0.0061 1.3E-07 50.1 7.1 53 27-81 2-62 (95)
228 cd05807 CBM20_CGTase CGTase, C 96.6 0.011 2.3E-07 49.3 8.2 57 25-81 2-70 (101)
229 cd05810 CBM20_alpha_MTH Glucan 96.6 0.012 2.5E-07 48.7 8.2 54 26-81 1-64 (97)
230 PRK05402 glycogen branching en 96.6 0.006 1.3E-07 68.8 8.1 64 27-91 132-202 (726)
231 cd05816 CBM20_DPE2_repeat2 Dis 96.5 0.029 6.2E-07 46.5 9.8 46 34-81 12-64 (99)
232 cd02853 MTHase_N_term Maltooli 96.3 0.02 4.3E-07 46.0 7.8 60 28-93 10-71 (85)
233 cd05467 CBM20 The family 20 ca 96.3 0.016 3.4E-07 47.5 7.4 49 32-81 9-65 (96)
234 PRK05402 glycogen branching en 96.1 0.011 2.4E-07 66.7 6.9 61 27-90 29-94 (726)
235 cd05817 CBM20_DSP Dual-specifi 96.1 0.029 6.4E-07 46.5 7.8 47 33-81 10-62 (100)
236 TIGR01515 branching_enzym alph 96.0 0.03 6.5E-07 62.0 9.6 64 27-92 29-100 (613)
237 TIGR02402 trehalose_TreZ malto 95.7 0.03 6.5E-07 61.0 8.1 61 28-95 1-64 (542)
238 KOG0476 Cl- channel CLC-2 and 95.7 0.036 7.9E-07 60.2 8.0 59 285-347 592-650 (931)
239 PF03423 CBM_25: Carbohydrate 95.5 0.039 8.5E-07 44.5 6.0 52 35-86 17-75 (87)
240 cd05806 CBM20_laforin Laforin 95.4 0.21 4.5E-06 42.3 10.1 51 31-81 10-74 (112)
241 cd05815 CBM20_DPE2_repeat1 Dis 94.7 0.12 2.7E-06 42.8 7.0 49 33-81 10-65 (101)
242 COG1125 OpuBA ABC-type proline 94.7 0.2 4.2E-06 48.4 9.1 112 380-509 188-308 (309)
243 PLN02960 alpha-amylase 94.0 0.054 1.2E-06 60.9 4.2 56 27-82 129-198 (897)
244 TIGR02104 pulA_typeI pullulana 93.9 0.13 2.7E-06 57.0 7.1 62 28-93 21-93 (605)
245 PLN02316 synthase/transferase 93.3 0.36 7.9E-06 55.9 9.4 59 26-84 329-399 (1036)
246 TIGR03415 ABC_choXWV_ATP choli 93.0 0.34 7.3E-06 50.4 8.0 47 380-428 334-380 (382)
247 COG4175 ProV ABC-type proline/ 92.7 0.24 5.2E-06 49.3 5.9 95 295-429 290-384 (386)
248 PF11806 DUF3327: Domain of un 92.2 1 2.2E-05 38.8 8.6 84 26-110 2-115 (122)
249 PLN02316 synthase/transferase 91.9 0.61 1.3E-05 54.1 8.8 65 27-91 155-231 (1036)
250 PLN02950 4-alpha-glucanotransf 91.4 1.4 3E-05 50.9 11.0 89 22-112 149-254 (909)
251 PLN02950 4-alpha-glucanotransf 91.1 1.6 3.5E-05 50.4 11.2 66 24-89 7-88 (909)
252 TIGR02100 glgX_debranch glycog 90.4 0.68 1.5E-05 51.9 7.3 54 28-85 16-75 (688)
253 TIGR02102 pullulan_Gpos pullul 89.4 0.89 1.9E-05 53.3 7.3 64 28-93 329-407 (1111)
254 PRK03705 glycogen debranching 88.7 0.81 1.8E-05 51.0 6.2 54 28-85 21-78 (658)
255 COG1125 OpuBA ABC-type proline 87.8 1.9 4.2E-05 41.8 7.2 108 299-425 195-307 (309)
256 TIGR02103 pullul_strch alpha-1 87.3 2.6 5.6E-05 48.5 9.2 66 27-94 136-215 (898)
257 PRK10439 enterobactin/ferric e 85.9 3.9 8.4E-05 43.0 9.1 59 22-81 35-106 (411)
258 PLN03244 alpha-amylase; Provis 84.2 0.96 2.1E-05 50.5 3.7 65 18-82 123-201 (872)
259 KOG0476 Cl- channel CLC-2 and 83.9 1.4 2.9E-05 48.6 4.6 63 367-429 584-648 (931)
260 PRK14510 putative bifunctional 79.2 6.4 0.00014 47.2 8.4 54 28-85 25-84 (1221)
261 cd02857 CD_pullulan_degrading_ 77.0 14 0.00029 30.9 7.8 58 24-81 16-79 (116)
262 KOG0470 1,4-alpha-glucan branc 73.5 4.3 9.4E-05 44.8 4.5 41 28-69 115-157 (757)
263 PLN02877 alpha-amylase/limit d 70.1 20 0.00043 41.7 9.0 51 27-82 223-280 (970)
264 COG3794 PetE Plastocyanin [Ene 60.7 27 0.00059 30.3 6.0 49 26-78 62-111 (128)
265 PRK11388 DNA-binding transcrip 60.2 28 0.00061 38.8 7.8 98 390-504 61-164 (638)
266 COG1559 Aminodeoxychorismate l 59.9 1.2E+02 0.0026 31.0 11.5 145 289-483 45-191 (342)
267 KOG2118 Predicted membrane pro 59.8 17 0.00037 39.2 5.7 108 380-506 215-324 (498)
268 PF01357 Pollen_allerg_1: Poll 55.9 37 0.0008 26.9 5.7 61 23-88 11-77 (82)
269 KOG1263 Multicopper oxidases [ 53.0 11 0.00024 41.1 3.0 63 47-114 84-152 (563)
270 PF03370 CBM_21: Putative phos 51.7 33 0.00071 28.9 5.1 48 37-84 34-99 (113)
271 PF02903 Alpha-amylase_N: Alph 45.9 33 0.00071 29.1 4.3 69 22-90 19-99 (120)
272 TIGR02375 pseudoazurin pseudoa 45.8 69 0.0015 27.2 6.1 48 26-78 23-71 (116)
273 TIGR03503 conserved hypothetic 42.3 53 0.0012 33.9 5.7 42 40-84 152-195 (374)
274 PF05198 IF3_N: Translation in 41.3 55 0.0012 25.6 4.5 29 402-430 12-40 (76)
275 PF13473 Cupredoxin_1: Cupredo 39.1 28 0.00061 28.6 2.7 16 62-77 74-90 (104)
276 TIGR03009 plancto_dom_2 Planct 37.7 38 0.00082 32.1 3.6 14 80-93 67-83 (210)
277 PF14347 DUF4399: Domain of un 35.7 68 0.0015 25.8 4.3 32 61-93 50-81 (87)
278 PF11896 DUF3416: Domain of un 31.8 78 0.0017 29.4 4.6 40 46-88 55-99 (187)
279 PRK10785 maltodextrin glucosid 29.4 1.7E+02 0.0037 32.5 7.6 63 22-84 17-87 (598)
280 KOG0045 Cytosolic Ca2+-depende 28.3 54 0.0012 36.4 3.4 27 71-97 115-144 (612)
281 TIGR03102 halo_cynanin halocya 28.1 1.8E+02 0.0038 24.7 5.8 47 27-78 51-99 (115)
282 PF05198 IF3_N: Translation in 28.0 1.1E+02 0.0023 24.0 4.1 25 484-509 12-36 (76)
283 PF11797 DUF3324: Protein of u 27.1 2.1E+02 0.0045 25.0 6.4 50 33-90 69-126 (140)
284 PF07495 Y_Y_Y: Y_Y_Y domain; 27.1 52 0.0011 24.2 2.2 42 41-89 14-58 (66)
285 COG2216 KdpB High-affinity K+ 25.6 90 0.002 33.6 4.2 38 469-508 412-449 (681)
286 PRK11388 DNA-binding transcrip 24.5 2.8E+02 0.006 31.0 8.3 97 304-419 65-162 (638)
287 KOG2118 Predicted membrane pro 24.2 1.6E+02 0.0036 31.8 6.1 110 289-423 214-324 (498)
288 PF00127 Copper-bind: Copper b 23.0 1.4E+02 0.0031 24.1 4.3 17 27-43 26-43 (99)
289 cd00503 Frataxin Frataxin is a 22.4 50 0.0011 27.5 1.4 18 71-89 65-82 (105)
290 PRK10301 hypothetical protein; 21.4 4.9E+02 0.011 22.3 7.4 47 37-84 61-113 (124)
291 TIGR02657 amicyanin amicyanin. 21.2 2.4E+02 0.0051 22.0 5.1 48 27-78 20-69 (83)
292 PF04985 Phage_tube: Phage tai 21.0 3.3E+02 0.0072 24.4 6.7 48 37-91 98-147 (167)
No 1
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=100.00 E-value=2.8e-33 Score=285.85 Aligned_cols=304 Identities=31% Similarity=0.553 Sum_probs=258.8
Q ss_pred HHHHHHHHHhhhCcccccCCCCCcEEEEeCCCCHHHHHHHHHHcCCcEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCCC
Q 010368 175 VSRHRVSVFLSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGS 254 (512)
Q Consensus 175 ~~~~~~~~fl~~~~~yd~~p~s~kvv~ld~~~~v~~A~~~l~e~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~ 254 (512)
.....+..|++.++||+.+|.+++++++|..+++.+||++|..++.+++|+||....+++|++++.||+.++..+++.+.
T Consensus 54 ~~~~~~~~~~~~~~~~~~~p~~~~l~~~d~~~~v~~a~~~l~~~~~~~~p~~~~~~~~~~g~~~~~d~i~~~~~~~~~~~ 133 (381)
T KOG1764|consen 54 NAVDTLSKFMKSHTCYDLLPTSSKLVVFDTKLSVKKAFNALVQNGVRAAPLWDSKKQQFVGMLTITDFITVLLRYYKSKS 133 (381)
T ss_pred chhHHHHHHHhccCcccccCCcceeEEeeCCCcHHHHHHHHHhhceeeeccccCccceeEEEEEHHHHHHHHHHhhccCC
Confidence 35667889999999999999999999999999999999999999999999999999999999999999999988776422
Q ss_pred CC-ChhhHhhhhHHHHHHhhhhhccccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEe
Q 010368 255 NL-TEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHI 333 (512)
Q Consensus 255 ~~-~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGi 333 (512)
.. ..+.++...+..|++..... +....++++.+.|..++.+++..+.+++++++||.| .+.+ .++++
T Consensus 134 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~i~p~~s~l~~~~~l~~~~~~rvpv~d--~~~~---~v~~i 201 (381)
T KOG1764|consen 134 SLDNIEVLEDSQLSKRREVECLL-------KETLKPPFVSISPESSLLDAVLLLIKSRIHRVPVID--PETG---EVLYI 201 (381)
T ss_pred cHHHHhhhhhhhccccchhhhhh-------ccccCCCceeecCcHHHHHHHHHHHhCCccceeeec--cccc---ceeee
Confidence 22 23444445555555442211 222345569999999999999999999999999995 5666 89999
Q ss_pred eehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCc
Q 010368 334 ASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDS 413 (512)
Q Consensus 334 is~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~ 413 (512)
+|++.|++++..+.+... +..++..++.++.+|+|. .+..+..++++.+|+++|...+++++||||+.|+
T Consensus 202 lt~~rIl~~l~~~~~~~~-~~~~l~~s~~dl~ig~~~---------~i~~i~~~~~v~~al~~m~~~~is~lpvV~~~g~ 271 (381)
T KOG1764|consen 202 LTQRRILKFLWLNGRLLP-LPSLLSKSLSDLGIGTWS---------NIASISEDTPVIEALKIMSERRISALPVVDENGK 271 (381)
T ss_pred hhHHHHHHHHHHhhcccc-cHHHhhCCHHHhCcchhh---------hheeecCCCcHHHHHHHHHhcCcCcceEEcCCCc
Confidence 999999999998876654 456788999999999997 6889999999999999999999999999999999
Q ss_pred EEEEEeHHHHHHHHhcccccccCccccc-HHHHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeC
Q 010368 414 LLDIYCRSDITALAKDKAYAHINLSEMT-IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA 492 (512)
Q Consensus 414 liGivs~~Di~~~~~~~~~~~l~~~~~~-v~~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~ 492 (512)
.+|+++..|+..+.....|..++ .+ +.+++..+.. ....+++|.++++|.+++.+|..+++||+||||+
T Consensus 272 ~v~~~s~~Dv~~l~~~~~~~~~~---~~~l~~~~~~~~~-------~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~ 341 (381)
T KOG1764|consen 272 KVGNYSRFDVIHLAREGTYNNLD---LSCLSEALSHRPI-------RFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDE 341 (381)
T ss_pred eecceehhhhhhhhhcCccCccc---hhHHHHHhhhccc-------ccCccEEEeecchHHHHHHHHHhcCceEEEEEcC
Confidence 99999999999999888887665 34 6676644331 1346899999999999999999999999999996
Q ss_pred CCCeEEEEEehHHHHHHhh
Q 010368 493 GSKRVEGIVSLSDIFKFLL 511 (512)
Q Consensus 493 ~~~~liGiIS~~DIl~~ll 511 (512)
+|.++|+||++||+.++.
T Consensus 342 -~~~l~GvvSLsDil~~l~ 359 (381)
T KOG1764|consen 342 -DGVLVGVISLSDILSYLV 359 (381)
T ss_pred -CCcEEEEeeHHHHHHHHH
Confidence 899999999999999875
No 2
>cd02859 AMPKbeta_GBD_like AMP-activated protein kinase (AMPK) beta subunit glycogen binding domain (GBD). AMPK is a metabolic stress sensing protein that senses AMP/ATP and has recently been found to act as a glycogen sensor as well. The protein functions as a alpha-beta-gamma heterotrimer. This domain is the glycogen binding domain of the beta subunit.
Probab=99.92 E-value=4.2e-25 Score=175.77 Aligned_cols=79 Identities=42% Similarity=0.907 Sum_probs=73.4
Q ss_pred eeeEEEEecCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeeeCCCCCeeeE
Q 010368 25 LIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGIVNTV 104 (512)
Q Consensus 25 ~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~d~~G~~nn~ 104 (512)
++||+|+|.+++++|+|+|||++|++..||.+.. .+ |++++.||||.|+|||+|||+|.+||++|++.|++|+.||+
T Consensus 1 ~~~v~f~~~~~a~~V~v~G~F~~W~~~~pm~~~~--~~-~~~~~~L~~g~y~YkF~Vdg~w~~d~~~~~~~d~~G~~NN~ 77 (79)
T cd02859 1 MVPTTFVWPGGGKEVYVTGSFDNWKKKIPLEKSG--KG-FSATLRLPPGKYQYKFIVDGEWRHSPDLPTETDDEGNVNNV 77 (79)
T ss_pred CeEEEEEEcCCCcEEEEEEEcCCCCccccceECC--CC-cEEEEEcCCCCEEEEEEECCEEEeCCCCCccCCCCCcEeee
Confidence 4799999999999999999999999878998853 23 99999999999999999999999999999999999999999
Q ss_pred EE
Q 010368 105 LL 106 (512)
Q Consensus 105 ~~ 106 (512)
|.
T Consensus 78 i~ 79 (79)
T cd02859 78 ID 79 (79)
T ss_pred EC
Confidence 84
No 3
>cd02861 E_set_proteins_like E or "early" set-like proteins. These alpha amylase-like sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.76 E-value=2.5e-18 Score=138.22 Aligned_cols=77 Identities=34% Similarity=0.721 Sum_probs=68.9
Q ss_pred eeEEEEecCCC-cEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEECCEEe-eCCCCC-eeeCCCCCee
Q 010368 26 IPMRFVWPYGG-RSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWR-HDEHQP-FISSEYGIVN 102 (512)
Q Consensus 26 ~~~~f~w~~~~-~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~VDg~w~-~d~~~~-~~~d~~G~~n 102 (512)
+|++|+|..++ ++|+|+|+||+|+. .+|.+. .+|.|++++.|++|.|+|||+|||.|. +||.++ +..|++|+.|
T Consensus 2 ~~vtf~~~ap~a~~V~v~G~fn~W~~-~~m~~~--~~G~w~~~~~l~~G~y~Ykf~vdg~~~~~DP~~~~~~~~~~g~~n 78 (82)
T cd02861 2 VPVVFAYRGPEADSVYLAGSFNNWNA-IPMERE--GDGLWVVTVELRPGRYEYKFVVDGEWVIVDPNAAAYVDDGFGGKN 78 (82)
T ss_pred ccEEEEEECCCCCEEEEEeECCCCCc-ccCEEC--CCCcEEEEEeCCCCcEEEEEEECCEEeeCCCCCCceecCCCCccc
Confidence 58999977776 99999999999984 688874 358999999999999999999999998 999988 5889999999
Q ss_pred eEE
Q 010368 103 TVL 105 (512)
Q Consensus 103 n~~ 105 (512)
|+|
T Consensus 79 ~v~ 81 (82)
T cd02861 79 AVF 81 (82)
T ss_pred eEc
Confidence 987
No 4
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.73 E-value=3.2e-17 Score=152.66 Aligned_cols=120 Identities=19% Similarity=0.373 Sum_probs=111.1
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCC
Q 010368 372 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 451 (512)
Q Consensus 372 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 451 (512)
+|+++|.++++++.+++|+.+|.++|.+++++..||+|++ +++|++|.+|+..+++++.+ +..|.++|
T Consensus 173 ~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd~d-k~vGiit~~dI~~aia~g~~------~~kV~~~M----- 240 (294)
T COG2524 173 KVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVDDD-KIVGIITLSDIAKAIANGNL------DAKVSDYM----- 240 (294)
T ss_pred hhhhhccCCceEecCCccHHHHHHHHHHcCccCCceecCC-ceEEEEEHHHHHHHHHcCCc------cccHHHHh-----
Confidence 5678899999999999999999999999999999999855 99999999999998887633 47899988
Q ss_pred CCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 452 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 452 ~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
.+.++++.+|+.+.+|++.|..+++.||.|+|. +|+++|+||++|||+.|.+
T Consensus 241 --------~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds-~gkpvGiITrTDIL~~ia~ 292 (294)
T COG2524 241 --------RKNVITINEDEDIYDAIRLMNKNNVGRLLVTDS-NGKPVGIITRTDILTRIAG 292 (294)
T ss_pred --------ccCCceEcCchhHHHHHHHHHhcCcceEEEEcc-CCcEEEEEehHHHHHHhhc
Confidence 778999999999999999999999999999996 9999999999999999864
No 5
>KOG1616 consensus Protein involved in Snf1 protein kinase complex assembly [Carbohydrate transport and metabolism]
Probab=99.71 E-value=2.2e-17 Score=162.66 Aligned_cols=91 Identities=35% Similarity=0.728 Sum_probs=84.5
Q ss_pred CCCceeeEEEEecCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEECCEEeeCCCCCeeeCCCCC
Q 010368 21 PDTVLIPMRFVWPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPFISSEYGI 100 (512)
Q Consensus 21 ~~~~~~~~~f~w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~VDg~w~~d~~~~~~~d~~G~ 100 (512)
......|++|+|.+|++.|+|+|||++|...++|.+..+..|.|.+++.|++|.|+|||+|||+|++|++.|++.|..|+
T Consensus 75 ~~~~~~pvvi~W~~gg~~v~v~gS~~nWk~~~~l~~~~~~~~~f~~~~dL~~g~~~~kf~vdge~~~s~~~pta~d~~Gn 154 (289)
T KOG1616|consen 75 DREQGRPTVIRWSQGGKEVYVDGSFGNWKTKIPLVRSGKNVGGFSTILDLPPGEHEYKFIVDGEWRHDPDLPTAEDSLGN 154 (289)
T ss_pred ccccCCceEEEecCCCceEEEecccccccccccceecCCCcccceeeEecCCceEEEEEecCCceecCCCCcccccccCC
Confidence 35678999999999999999999999999999998866555669999999999999999999999999999999999999
Q ss_pred eeeEEEeeCCC
Q 010368 101 VNTVLLATEPN 111 (512)
Q Consensus 101 ~nn~~~v~~~~ 111 (512)
.||++.|.+.+
T Consensus 155 ~~N~i~v~~~~ 165 (289)
T KOG1616|consen 155 LNNILEVQDPD 165 (289)
T ss_pred cccceEecCcc
Confidence 99999999876
No 6
>COG2524 Predicted transcriptional regulator, contains C-terminal CBS domains [Transcription]
Probab=99.62 E-value=3.7e-15 Score=138.97 Aligned_cols=123 Identities=20% Similarity=0.361 Sum_probs=107.1
Q ss_pred cccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccc
Q 010368 278 RQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPIL 357 (512)
Q Consensus 278 ~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l 357 (512)
-+...++..|+++++++.+++|+.+|++++.+++++..||+| ++ +++|++|.+||.+.+.+. .+
T Consensus 169 iPk~~V~~~~s~~~i~v~~d~tl~eaak~f~~~~i~GaPVvd---~d----k~vGiit~~dI~~aia~g---------~~ 232 (294)
T COG2524 169 IPKEKVKNLMSKKLITVRPDDTLREAAKLFYEKGIRGAPVVD---DD----KIVGIITLSDIAKAIANG---------NL 232 (294)
T ss_pred cCcchhhhhccCCceEecCCccHHHHHHHHHHcCccCCceec---CC----ceEEEEEHHHHHHHHHcC---------Cc
Confidence 344556778999999999999999999999999999999995 22 699999999999888753 11
Q ss_pred cCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 010368 358 KLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 428 (512)
Q Consensus 358 ~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~ 428 (512)
+. +|.++|.++++++..++.+.||+++|..+++.++.|+|.+|+++|+||+.|++..++
T Consensus 233 ~~------------kV~~~M~k~vitI~eDe~i~dAir~M~~~nVGRLlV~ds~gkpvGiITrTDIL~~ia 291 (294)
T COG2524 233 DA------------KVSDYMRKNVITINEDEDIYDAIRLMNKNNVGRLLVTDSNGKPVGIITRTDILTRIA 291 (294)
T ss_pred cc------------cHHHHhccCCceEcCchhHHHHHHHHHhcCcceEEEEccCCcEEEEEehHHHHHHhh
Confidence 23 445559999999999999999999999999999999999999999999999997553
No 7
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.60 E-value=2.8e-14 Score=122.99 Aligned_cols=119 Identities=39% Similarity=0.706 Sum_probs=96.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.+|++.|.+++.+++||+|++|+++|+++.+|++.+...+.... ...++.+.+..+ ..|
T Consensus 2 ~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~~~~~~~Giv~~~dl~~~~~~~~~~~---~~~~~~~~~~~~-------~~~ 71 (120)
T cd04641 2 NIATARPDTPLIDVLDMLVERRVSALPIVDENGKVVDVYSRFDVINLAKEGAYNN---LDLTVGEALERR-------SQD 71 (120)
T ss_pred CcEEEcCCCCHHHHHHHHHHcCCCeeeEECCCCeEEEEEeHHHHHHHHhcCcccc---ccCCHHHHHhhc-------ccC
Confidence 5678999999999999999999999999998999999999999998654432211 123344433111 123
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||++|++++
T Consensus 72 ~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~-~~~~~Givt~~di~~~ 120 (120)
T cd04641 72 FEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDE-NKRVEGIISLSDILQF 120 (120)
T ss_pred CCCCeEEcCCCcHHHHHHHHHhcCccEEEEECC-CCCEEEEEEHHHhhcC
Confidence 457889999999999999999999999999995 7999999999999874
No 8
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.58 E-value=2.8e-14 Score=135.35 Aligned_cols=170 Identities=15% Similarity=0.266 Sum_probs=129.2
Q ss_pred eeHHHHHHHHHHhhcCCCCCChhhHhhhhHHH-HHHhhhhhccccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCcee
Q 010368 237 LSASDFILILRELGNHGSNLTEEELETHTISA-WKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATV 315 (512)
Q Consensus 237 lt~~Dii~il~~~~~~~~~~~~~~l~~~~i~~-~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~l 315 (512)
++..|+-..|+.+..- -+++.++++.+--+. .+...+.+ .+=.+..+|+++++++.+++++.+|.++|.+|+++.+
T Consensus 203 fs~~Dld~aL~~~~E~-lDIdrddLe~llr~~elqa~~R~~--~~LtcadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaL 279 (382)
T COG3448 203 FSSEDLDAALQRLGET-LDIDRDDLERLLRETELQALRRRM--GELTCADIMSRDVVTVSTDTSIDHARKLLQEHRIKAL 279 (382)
T ss_pred CCHHHHHHHHHhcCce-ecCCHHHHHHHHHHHHHHHHHHHh--ccccHHHhcCccceecCCcCChHHHHHHHHHcCcccc
Confidence 6889999999877532 345667777653222 22222221 1123567899999999999999999999999999999
Q ss_pred eEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCCCCCceeecCCCCHHHHHH
Q 010368 316 PIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALN 395 (512)
Q Consensus 316 pVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~ 395 (512)
||+| ++. +++|+++++|+++.....+ -+.++.+ -.++++.+|+.++.++.++++..+.+-
T Consensus 280 PV~d--~~~----rl~GiVt~~dl~~~a~~~p----------~qrlr~~----~~~~vk~imt~~v~tv~pdtpa~~lvp 339 (382)
T COG3448 280 PVLD--EHR----RLVGIVTQRDLLKHARPSP----------FQRLRFL----RPPTVKGIMTTPVVTVRPDTPAVELVP 339 (382)
T ss_pred cccc--ccc----ceeeeeeHHHHhhccCcch----------HHHhhcc----CCCcccccccCcceeecCCCcHHHHHH
Confidence 9994 455 7999999999986332211 1122222 123567779999999999999999999
Q ss_pred HHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 010368 396 LLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 429 (512)
Q Consensus 396 ~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~ 429 (512)
.+.+.+.+++||+|++|+++||||++|++..+..
T Consensus 340 ~lad~g~H~lpvld~~g~lvGIvsQtDliaal~r 373 (382)
T COG3448 340 RLADEGLHALPVLDAAGKLVGIVSQTDLIAALYR 373 (382)
T ss_pred HhhcCCcceeeEEcCCCcEEEEeeHHHHHHHHHH
Confidence 9999999999999999999999999999976544
No 9
>COG3448 CBS-domain-containing membrane protein [Signal transduction mechanisms]
Probab=99.57 E-value=7.6e-15 Score=139.17 Aligned_cols=126 Identities=20% Similarity=0.367 Sum_probs=107.4
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCC
Q 010368 373 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 452 (512)
Q Consensus 373 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 452 (512)
..++|.++++++.+++++.+|.++|.+++++.+||+|++.+++|+|+++|+.+-.....+.++. ++ ..
T Consensus 247 cadIMSrdVvtv~~~ts~dhA~~ll~~H~ikaLPV~d~~~rl~GiVt~~dl~~~a~~~p~qrlr--------~~----~~ 314 (382)
T COG3448 247 CADIMSRDVVTVSTDTSIDHARKLLQEHRIKALPVLDEHRRLVGIVTQRDLLKHARPSPFQRLR--------FL----RP 314 (382)
T ss_pred HHHhcCccceecCCcCChHHHHHHHHHcCcccccccccccceeeeeeHHHHhhccCcchHHHhh--------cc----CC
Confidence 3456999999999999999999999999999999999999999999999999855443333322 11 12
Q ss_pred CCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010368 453 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 511 (512)
Q Consensus 453 ~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll 511 (512)
...+++|+.++.++.++++..+++-++.+.+.|.+||+|+ .|+++||||.+|++.++.
T Consensus 315 ~~vk~imt~~v~tv~pdtpa~~lvp~lad~g~H~lpvld~-~g~lvGIvsQtDliaal~ 372 (382)
T COG3448 315 PTVKGIMTTPVVTVRPDTPAVELVPRLADEGLHALPVLDA-AGKLVGIVSQTDLIAALY 372 (382)
T ss_pred CcccccccCcceeecCCCcHHHHHHHhhcCCcceeeEEcC-CCcEEEEeeHHHHHHHHH
Confidence 2234577899999999999999999999999999999996 999999999999998764
No 10
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.56 E-value=4.1e-14 Score=120.27 Aligned_cols=110 Identities=9% Similarity=0.246 Sum_probs=93.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.+|++.|.+.+.+.++|+|++|+++|+++..|+.+..... +...++.++|
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~------~~~~~v~~~~------------- 62 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVDEENKVLGQVTLSDLLEIGPND------YETLKVCEVY------------- 62 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHhhcccc------ccccChhhee-------------
Confidence 356889999999999999989999999999999999999999998742211 1224566665
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.+|+++|.+++.+++||+|+ +|+++|+||.+||+++
T Consensus 63 ~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~-~~~~~Giit~~di~~~ 111 (111)
T cd04603 63 IVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDK-EGKLVGTIYERELLRF 111 (111)
T ss_pred ecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCeEEEEEEhHHhhcC
Confidence 556889999999999999999999999999995 7999999999999863
No 11
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=1.4e-13 Score=117.59 Aligned_cols=111 Identities=19% Similarity=0.354 Sum_probs=95.9
Q ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccccC
Q 010368 381 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS 460 (512)
Q Consensus 381 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~ 460 (512)
+.++.+++++.+|++.|.+.+...+||+|++|+++|+++..|+.+....... .....++.+++ .
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~g~~~G~vt~~dl~~~~~~~~~---~~~~~~v~~~~-------------~ 66 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCDPHGKLAGVLTKTDVVRQMGRCGG---PGCTAPVENVM-------------T 66 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEehHHHHHHHhhcCC---CcccCCHHHHh-------------c
Confidence 5688999999999999999999999999999999999999999875543110 12345788877 5
Q ss_pred CcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 461 QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 461 ~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
.++.++.+++++.+|++.|.+++..++||+|+ +|+++|+||++|+++
T Consensus 67 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 67 RAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDE-NARPLGVLNARDALK 113 (114)
T ss_pred CCCeeECCCCCHHHHHHHHHHcCCCeEEEECC-CCcEEEEEEhHhhcc
Confidence 67889999999999999999999999999995 789999999999975
No 12
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.54 E-value=5.8e-14 Score=116.89 Aligned_cols=95 Identities=20% Similarity=0.310 Sum_probs=85.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
+++++++++++.+|.+.|.+++++++||+|++ |+++|++|..|+.+...
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~------------------------------ 51 (98)
T cd04618 2 KLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR------------------------------ 51 (98)
T ss_pred eEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee------------------------------
Confidence 46789999999999999999999999999974 89999999999976211
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEehHHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFKF 509 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~-~~liGiIS~~DIl~~ 509 (512)
+.++.+++++.+|+++|.+++++++||+|+ + |+++|+||.+||+++
T Consensus 52 ----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~~~giit~~d~~~~ 98 (98)
T cd04618 52 ----LVSIHPERSLFDAALLLLKNKIHRLPVIDP-STGTGLYILTSRRILKF 98 (98)
T ss_pred ----eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC-CCCCceEEeehhhhhcC
Confidence 567999999999999999999999999996 6 899999999999863
No 13
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.53 E-value=1.3e-13 Score=119.64 Aligned_cols=118 Identities=20% Similarity=0.434 Sum_probs=101.4
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCC
Q 010368 374 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 453 (512)
Q Consensus 374 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 453 (512)
..+|..+++.+.+++++.+|+++|.+++++.+||+++ ++++|-||..+|.+..-++. -++....+.++|
T Consensus 68 ~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~~-~k~VGsItE~~iv~~~le~~---e~i~~~~vr~vM------- 136 (187)
T COG3620 68 KTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIEE-DKVVGSITENDIVRALLEGM---ESIRSLRVREVM------- 136 (187)
T ss_pred hhhccCCeeEECchhhHHHHHHHHHHcCCccCceeeC-CeeeeeecHHHHHHHHhccc---cchhhhhHHHHh-------
Confidence 3449999999999999999999999999999999985 89999999999998765543 123456778777
Q ss_pred CCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 454 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 454 ~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
..++++|+++.++..+.+++..++. +.|++ +|+++||||+.||++++.|
T Consensus 137 ------~e~fP~Vs~~~~l~vI~~LL~~~~A--VlV~e--~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 137 ------GEPFPTVSPDESLNVISQLLEEHPA--VLVVE--NGKVVGIITKADIMKLLAG 185 (187)
T ss_pred ------cCCCCcCCCCCCHHHHHHHHhhCCe--EEEEe--CCceEEEEeHHHHHHHHhc
Confidence 7789999999999999888888764 77776 7999999999999999864
No 14
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.52 E-value=2.6e-13 Score=116.54 Aligned_cols=113 Identities=21% Similarity=0.332 Sum_probs=95.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.+|++.|..++..++||+|++++++|+++..|+.+....+. .+...++.++|..
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~Givt~~dl~~~~~~~~----~~~~~~~~~~~~~----------- 66 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVDEDGDLVGVVSRKDLLKASIGGA----DLQKVPVGVIMTR----------- 66 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHcCC----CccCCCHHHHhCC-----------
Confidence 5678999999999999999899999999998899999999999988654321 1224567777721
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCC---CeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS---KRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~---~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.+|+++|.+++++++||||+ + |+++|+||.+||++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~-~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 67 MPNITTTTPEESVLEAAKKLIEHQVDSLPVVEK-VDEGLEVIGRITKTNITK 117 (118)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeC-CCccceEEEEEEhhheec
Confidence 136889999999999999999999999999996 5 79999999999975
No 15
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.50 E-value=2e-13 Score=138.93 Aligned_cols=119 Identities=13% Similarity=0.261 Sum_probs=104.1
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcC
Q 010368 372 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 449 (512)
Q Consensus 372 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~ 449 (512)
+|+++|.+ ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+||.+|+.+....+. .+.+.++.++|
T Consensus 203 ~V~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd~~g~lvGivt~~Dl~~~~~~~~----~~~~~~v~~im--- 275 (326)
T PRK10892 203 RVSDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICDDNMKIEGIFTDGDLRRVFDMGI----DLRQASIADVM--- 275 (326)
T ss_pred cHHHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEcCCCcEEEEEecHHHHHHHhcCC----CcccCCHHHhc---
Confidence 57788986 8999999999999999999988888898998999999999999987654321 23346788877
Q ss_pred CCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 450 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 450 ~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
.+++.++.+++++.+|++.|.+++++++||++ +++++|+||..||+++
T Consensus 276 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~--~~~lvGiit~~dil~~ 323 (326)
T PRK10892 276 ----------TPGGIRVRPGILAVDALNLMQSRHITSVLVAD--GDHLLGVLHMHDLLRA 323 (326)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHCCCcEEEEee--CCEEEEEEEhHHhHhc
Confidence 66899999999999999999999999999998 5899999999999975
No 16
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.50 E-value=6.7e-13 Score=113.24 Aligned_cols=112 Identities=18% Similarity=0.334 Sum_probs=95.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.....+... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 64 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVDRDGGVVGIITLPDLLRALEADEA----GEPSAVDEVA------------- 64 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEcCCCCEEEEEEHHHHHHHHhcccc----cccccHHHhc-------------
Confidence 45678999999999999999999999999999999999999999886543311 1123466665
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCC--CeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~--~~liGiIS~~DIl~~ 509 (512)
..++.+|.+++++.+++++|.+++.+.+||+|+ + |+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~-~~~~~~~Gvit~~di~~~ 115 (115)
T cd04593 65 TPPLLTVHPDEPLAHALDRMASRGLRQLPVVDR-GNPGQVLGLLTRENVLLA 115 (115)
T ss_pred cCCceEECCCCCHHHHHHHHHHcCCceeeEEeC-CCCCeEEEEEEhHHhhcC
Confidence 567899999999999999999999999999995 5 799999999999864
No 17
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.49 E-value=2.3e-13 Score=118.38 Aligned_cols=113 Identities=17% Similarity=0.274 Sum_probs=95.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++++.|.+++++++||+|++|+++|+++.+|++.....+.. ..+.++.++|
T Consensus 3 ~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd~~~~~~Gii~~~dl~~~~~~~~~----~~~~~v~~im------------- 65 (124)
T cd04608 3 APVTVLPTVTCAEAIEILKEKGFDQLPVVDESGKILGMVTLGNLLSSLSSGKV----QPSDPVSKAL------------- 65 (124)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCCEEEEEEHHHHHHHHHHhcc----CCCCcHHHHh-------------
Confidence 56789999999999999999999999999988999999999999875543321 1246889888
Q ss_pred CCcceEEcCCCCHHHHHHHHh---------cCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 460 SQRCQMCLPSDTLHKVMERLA---------NPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~---------~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
.+++.++.+++++.++.++|. +.+.+++||+++ +|+++|+||..||++++
T Consensus 66 ~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~Givt~~Dl~~~~ 124 (124)
T cd04608 66 YKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEK-QEKPIGIVTKIDLLSYI 124 (124)
T ss_pred hccceecCCCCCHHHHHhhcccCCceEEEecccccccccccc-ccceEEEEehhHhhhhC
Confidence 668999999999999999653 336788899985 89999999999999875
No 18
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.48 E-value=3.3e-13 Score=142.69 Aligned_cols=213 Identities=15% Similarity=0.186 Sum_probs=156.9
Q ss_pred EEeeeHHHHHHHHHHhhcCCCCCChhhHhhhhHHHHHHhhhhhccccCCCCCcCCCCceEeCCCCCHHHHHHHHHh----
Q 010368 234 VGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILH---- 309 (512)
Q Consensus 234 vGilt~~Dii~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~---- 309 (512)
.--++..|+.+++..+... ...+-+..+.-++...+...+.|+++.+|.+|.++++++++++|+.+|++.|.+
T Consensus 87 ~~~l~~dd~~~ll~~l~~~---~~~~lL~~l~~~er~~i~~ll~~~e~tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~ 163 (449)
T TIGR00400 87 INEMNLDDVIDLLEEVPAN---VVQQLLASSTEEERKAINLLLSYSDDSAGRIMTIEYVELKEDYTVGKALDYIRRVAKT 163 (449)
T ss_pred HHcCChhHHHHHHHhCCHH---HHHHHHHcCCHHHHHHHHHHhCCCcchHHHhCcCceEEECCCCcHHHHHHHHHhcCCC
Confidence 3445666666666544321 111223334445555666778888999999999999999999999999999975
Q ss_pred -CCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCCCCCceeecCCC
Q 010368 310 -NEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSA 388 (512)
Q Consensus 310 -~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~ 388 (512)
+++..++|+| +++ +++|+++.+|++.. . ...+++++ |.+++.++.+++
T Consensus 164 ~~~~~~v~Vvd--~~~----~l~GvV~l~dLl~a------~-------~~~~v~~i------------m~~~~~~v~~~~ 212 (449)
T TIGR00400 164 KEDIYTLYVTN--ESK----HLKGVLSIRDLILA------K-------PEEILSSI------------MRSSVFSIVGVN 212 (449)
T ss_pred ccceeEEEEEC--CCC----eEEEEEEHHHHhcC------C-------CCCcHHHH------------hCCCCeeECCCC
Confidence 4567889994 333 79999999998631 0 01234443 888888999999
Q ss_pred CHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccccCCcceEEcC
Q 010368 389 SLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLP 468 (512)
Q Consensus 389 ~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~tv~~ 468 (512)
++.+|++.|.+++...+||+|++|+++|+||.+|++....+. ...+++. ....+..+
T Consensus 213 ~~~eal~~m~~~~~~~lpVVD~~g~lvGiIt~~Dil~~l~~~----------~~ed~~~-------------~~gv~~~~ 269 (449)
T TIGR00400 213 DQEEVARLIQKYDFLAVPVVDNEGRLVGIVTVDDIIDVIQSE----------ATEDFYM-------------IAAVKPLD 269 (449)
T ss_pred CHHHHHHHHHHcCCCEEeEEcCCCeEEEEEEHHHHHHHHHhh----------hHHHHHH-------------hcCCCCCc
Confidence 999999999999999999999999999999999999877654 2356652 23334456
Q ss_pred CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 469 SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 469 ~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
++++.+++.+|.+++...|+|.- +.|++| ..++..
T Consensus 270 ~~~l~~~~~~~~~~R~~wL~v~~-----~~~~~t-~~ii~~ 304 (449)
T TIGR00400 270 DSYFDTSILVMAKNRIIWLLVLL-----VSSTFT-ATIISN 304 (449)
T ss_pred chhhhchHHHHHHhccchHHHHH-----HHHHHH-HHHHHH
Confidence 78889999999999998887763 456666 544443
No 19
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.48 E-value=1.1e-12 Score=111.74 Aligned_cols=112 Identities=20% Similarity=0.283 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++.++.+++++.++++.|.+++.+.+||+|++ ++++|+++.+|+++....... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~~~------------ 66 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEKRRESDAYGIVTMRDILKKVVAEGR---DPDRVNVYEIM------------ 66 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEECCCCcEEEEEehHHHHHHHHhCCC---CCCccCHHHHh------------
Confidence 46789999999999999998999999999987 899999999999874432211 11235678876
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.+|++.|.+++.+.+||+|+ |+++|+||..||+++
T Consensus 67 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~--~~~~Gvi~~~dl~~~ 114 (114)
T cd04630 67 -TKPLISVSPDMDIKYCARLMERTNIRRAPVVEN--NELIGIISLTDIFLA 114 (114)
T ss_pred -cCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC--CEEEEEEEHHHhhcC
Confidence 557899999999999999999999999999993 899999999999863
No 20
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=8.8e-13 Score=113.92 Aligned_cols=117 Identities=22% Similarity=0.374 Sum_probs=96.1
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cCcccccHHHHHhcCCCC
Q 010368 379 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDS 452 (512)
Q Consensus 379 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~------l~~~~~~v~~~l~~~~~~ 452 (512)
+++.++.++.++.++++.|.+.+++++||++++|+++|+++..|++.......... ......++.+++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~~~~~~~~~~~~~~~~i~~~~------ 75 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVDGDRRLVGIVTQRDLLRHARPDGRRPLRGRLRGRDKPETVGDIM------ 75 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEECCCCCEEEEEEHHHHHhhhcccccchhhhhhhcccccccHHHhc------
Confidence 35778999999999999999999999999998899999999999987554321100 001123455554
Q ss_pred CCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 453 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 453 ~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
...+.++.+++++.+++++|.+.+.+++||+|+ +|+++|+||..|++++
T Consensus 76 -------~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvit~~di~~~ 124 (124)
T cd04600 76 -------SPPVVTVRPDTPIAELVPLLADGGHHHVPVVDE-DRRLVGIVTQTDLIAA 124 (124)
T ss_pred -------cCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcC-CCCEEEEEEhHHhhcC
Confidence 567899999999999999999999999999995 8999999999999864
No 21
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.47 E-value=1.7e-12 Score=109.94 Aligned_cols=112 Identities=22% Similarity=0.442 Sum_probs=95.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++..+.++.++.++++.|.+.+++.+||+|++++++|+++..|+++....... .....++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~Giv~~~~l~~~~~~~~~---~~~~~~~~~~~------------- 65 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVDDGGRLVGIFSERDIVRKVALRGA---SALDTPVSEIM------------- 65 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEehHHHHHHHhhcCC---CccccCHHHhc-------------
Confidence 45678999999999999999999999999988999999999999875543211 11134677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+.+.+++||++ +|+++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~~ 113 (113)
T cd04623 66 TRNVITVTPDDTVDEAMALMTERRFRHLPVVD--GGKLVGIVSIGDVVKA 113 (113)
T ss_pred CCCcEEECCCCcHHHHHHHHHHcCCCEeEEEe--CCEEEEEEEHHHhhcC
Confidence 56789999999999999999999999999999 3899999999999864
No 22
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.47 E-value=7e-13 Score=112.91 Aligned_cols=111 Identities=19% Similarity=0.346 Sum_probs=92.5
Q ss_pred CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++.++.+++++.+|++.|.+++ .+.+||+|++|+++|+++..|++....... ...++.+++..
T Consensus 2 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~dl~~~~~~~~------~~~~v~~~~~~---------- 65 (114)
T cd04801 2 DFPTVPAHLTLREFVREYVLGSNQRRFVVVDNEGRYVGIISLADLRAIPTSQW------AQTTVIQVMTP---------- 65 (114)
T ss_pred CcceeCCCCCHHHHHHHHhccCCceeEEEEcCCCcEEEEEEHHHHHHHHHhhc------cccchhhhhcc----------
Confidence 4678899999999999997665 889999998899999999999988654321 13467777622
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||..||++
T Consensus 66 -~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~-~~~~~Gvl~~~di~~ 113 (114)
T cd04801 66 -AAKLVTVLSEESLAEVLKLLEEQGLDELAVVED-SGQVIGLITEADLLR 113 (114)
T ss_pred -cccceEECCCCcHHHHHHHHHHCCCCeeEEEcC-CCcEEEEEeccceec
Confidence 124668999999999999999999999999995 789999999999875
No 23
>cd04618 CBS_pair_5 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.46 E-value=5.3e-13 Score=111.07 Aligned_cols=97 Identities=47% Similarity=0.746 Sum_probs=85.8
Q ss_pred CcEEEEeCCCCHHHHHHHHHHcCCcEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCCCCCChhhHhhhhHHHHHHhhhhh
Q 010368 197 GKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYL 276 (512)
Q Consensus 197 ~kvv~ld~~~~v~~A~~~l~e~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~ 276 (512)
+++++++++.|+.+|++.|.++++.++||+|++.++++|++|..|+++++.
T Consensus 1 ~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd~~~~~~~Givt~~Dl~~~~~----------------------------- 51 (98)
T cd04618 1 SKLVVFDTKLPVKKAFNALVENGIRSAPLWDSRKQQFVGMLTITDFILILR----------------------------- 51 (98)
T ss_pred CeEEEECCCCcHHHHHHHHHHcCCceEEEEeCCCCEEEEEEEHHHHhhhee-----------------------------
Confidence 478999999999999999999999999999976679999999999865320
Q ss_pred ccccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHH
Q 010368 277 NRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK 341 (512)
Q Consensus 277 ~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~ 341 (512)
++++.+++++.+|+++|.+++++++||++. ++| +++|++|.+|+++
T Consensus 52 --------------~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~~~---~~~giit~~d~~~ 97 (98)
T cd04618 52 --------------LVSIHPERSLFDAALLLLKNKIHRLPVIDP--STG---TGLYILTSRRILK 97 (98)
T ss_pred --------------eEEeCCCCcHHHHHHHHHHCCCCEeeEEEC--CCC---CceEEeehhhhhc
Confidence 678899999999999999999999999952 334 8999999999975
No 24
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.46 E-value=1.3e-12 Score=110.56 Aligned_cols=110 Identities=21% Similarity=0.413 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++++.|.+.+...+||+|++|+++|+++..++.+...... .+.++.+++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~------------- 62 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVDGDGHLVGLLTRDDLIRALAEGG------PDAPVRGVM------------- 62 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEECCCCcEEEEeeHHHHHHHHHhcC------CCCcHHHHh-------------
Confidence 4567899999999999998888999999998899999999999988655431 124677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++..++++.+|++.|.+++..++||+++ +|+++|+||..||.++
T Consensus 63 ~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~dl~~~ 111 (111)
T cd04639 63 RRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDG-SGRLVGLVTLENVGEL 111 (111)
T ss_pred cCCCcEECCCCcHHHHHHHHHhcCCceeeEEcC-CCCEEEEEEHHHhhcC
Confidence 557889999999999999999999999999995 6999999999999763
No 25
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.46 E-value=2.2e-12 Score=108.95 Aligned_cols=108 Identities=22% Similarity=0.463 Sum_probs=94.1
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 379 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 379 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
+++.++.++.++.++++.|.+++++.+||+|++|+++|+++..++++...... .++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~--------~~~~~~~------------ 61 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVDEDGRLVGIVTSWDISKAVARDK--------KSVEDIM------------ 61 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEECCCCcEEEEEeHHHHHHHHhhCc--------cCHHHhc------------
Confidence 35678999999999999999999999999998899999999999987554321 2466655
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.+|++.|.+++.+.+||+++ +|+++|+||+.||++
T Consensus 62 -~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~v~~~di~~ 109 (110)
T cd04605 62 -TRNVITATPDEPIDVAARKMERHNISALPVVDA-ENRVIGIITSEDISK 109 (110)
T ss_pred -CCCCeEECCCCcHHHHHHHHHHhCCCEEeEECC-CCcEEEEEEHHHhhh
Confidence 567889999999999999999999999999995 899999999999975
No 26
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.8e-12 Score=111.63 Aligned_cols=116 Identities=17% Similarity=0.350 Sum_probs=96.3
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-----CcccccHHHHHhcCCCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-----NLSEMTIHQALQLGQDSYS 454 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l-----~~~~~~v~~~l~~~~~~~~ 454 (512)
++.++.+++++.++++.|.+.+++.+||++++|+++|+++..++.+.......... .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVNEDGKLVGLLTQRDLLRAALSSLSDNGEESLTKERDVPVAEVM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEECCCCCEEEEEEHHHHHHHhccccccccccccccccCcCHHHhh--------
Confidence 46789999999999999999999999999988999999999999886543211100 01234667666
Q ss_pred CccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 455 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 455 ~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 74 -----~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dl~~~ 122 (122)
T cd04803 74 -----KTDVLTVTPDTPLREAAEIMVENKIGCLPVVDD-KGTLVGIITRSDFLRL 122 (122)
T ss_pred -----CCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcC-CCCEEEEEEHHHhhcC
Confidence 567889999999999999999999999999995 7899999999999864
No 27
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.45 E-value=8e-13 Score=134.24 Aligned_cols=119 Identities=13% Similarity=0.237 Sum_probs=104.1
Q ss_pred ccCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcC
Q 010368 372 KIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 449 (512)
Q Consensus 372 ~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~ 449 (512)
+|+++|.++ +.++++++++.+|++.|...+...+||+|++|+++|+|+..|+.+....+. ..+.++.++|
T Consensus 198 ~V~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd~~g~~iG~vt~~dl~~~~~~~~-----~~~~~v~~im--- 269 (321)
T PRK11543 198 KVHHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCDAQQQVQGVFTDGDLRRWLVGGG-----ALTTPVNEAM--- 269 (321)
T ss_pred HHHHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEecHHHHHHHHhCCC-----CcCCcHHHhc---
Confidence 577789887 999999999999999999888999999999999999999999987654321 1234677776
Q ss_pred CCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 450 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 450 ~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
.+++.++.+++++.+|++.|.++++.++||||+ +|+++|+||..||+++
T Consensus 270 ----------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 270 ----------TRGGTTLQAQSRAIDAKEILMKRKITAAPVVDE-NGKLTGAINLQDFYQA 318 (321)
T ss_pred ----------CCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHhc
Confidence 567889999999999999999999999999995 7899999999999975
No 28
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.45 E-value=1.3e-12 Score=113.56 Aligned_cols=124 Identities=21% Similarity=0.351 Sum_probs=93.3
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
.+.++.+++++.+|++.|.+++++++||+|++|+++|+++..|++.......... ..+...++.....-......+
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d~~~~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 77 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVDEKGKLIGNISASDLKGLLLSPDDLL----LYRTITFKELSEKFTDSDGVK 77 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEECCCCcEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhhhcccccccc
Confidence 4678999999999999999999999999999999999999999988654321100 001100000000000011234
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.+|++.|.+++.+++||+|+ +++++|+||..||++
T Consensus 78 ~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~-~~~~~Giit~~dil~ 125 (126)
T cd04642 78 SRPLITCTPSSTLKEVITKLVANKVHRVWVVDE-EGKPIGVITLTDIIS 125 (126)
T ss_pred cCCCeEECCCCcHHHHHHHHHHhCCcEEEEECC-CCCEEEEEEHHHHhc
Confidence 668999999999999999999999999999995 799999999999986
No 29
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.44 E-value=2.8e-12 Score=109.01 Aligned_cols=110 Identities=18% Similarity=0.305 Sum_probs=94.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
.+.++.++.++.++++.|.+.+.+.++|+|++|+++|+++.+|+.+....... ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~~-----~~~~v~~~~------------- 64 (113)
T cd04607 3 KQLLVSPDASILDALRKIDKNALRIVLVVDENGRLLGTVTDGDIRRALLKGLS-----LDDPVSEVM------------- 64 (113)
T ss_pred cceEECCCCCHHHHHHHHHhcCcCEEEEECCCCCEEEEEEcHHHHHHHhcCCC-----cCCCHHHhh-------------
Confidence 35678999999999999998899999999989999999999999875543211 134677776
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+++.+++||+|+ +|+++|+||.+||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 112 (113)
T cd04607 65 NRNPITAKVGSSREEILALMRERSIRHLPILDE-EGRVVGLATLDDLLS 112 (113)
T ss_pred cCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECC-CCCEEEEEEhHHhcc
Confidence 556889999999999999999999999999995 899999999999974
No 30
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=1.7e-12 Score=112.20 Aligned_cols=116 Identities=18% Similarity=0.347 Sum_probs=95.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccc-------cCcccccHHHHHhcCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAH-------INLSEMTIHQALQLGQD 451 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~~~~~~~~~~-------l~~~~~~v~~~l~~~~~ 451 (512)
++.++.++.++.+++++|.+.+.+.+||+|++ |+++|+++..|++....+..... ......++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d~~~~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~----- 76 (125)
T cd04631 2 DVVTVPPTTPIMEAAKIMVRNGFRRLPVVDEGTGKLVGIITATDILKYLGGGEKFNKIKTGNGLEAINEPVRSIM----- 76 (125)
T ss_pred CceEeCCCCcHHHHHHHHHHcCcccceeEeCCCCEEEEEEEHHHHHHHhhccchhccccccccchhhhcCHHHHh-----
Confidence 45788999999999999999999999999987 99999999999987665332100 001123566655
Q ss_pred CCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 452 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 452 ~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.+|.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||+++
T Consensus 77 --------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~~Gvit~~di~~~ 125 (125)
T cd04631 77 --------TRNVITITPDDSIKDAAELMLEKRVGGLPVVDD-DGKLVGIVTERDLLKA 125 (125)
T ss_pred --------cCCceEeCCCCcHHHHHHHHHHcCCceEEEEcC-CCcEEEEEEHHHhhcC
Confidence 567999999999999999999999999999995 7999999999999874
No 31
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=2.6e-12 Score=109.03 Aligned_cols=111 Identities=20% Similarity=0.352 Sum_probs=94.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+.+....... +...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------- 64 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVDDKKRLVGIITRYDVLSYALESEE----LKDAKVREVM------------- 64 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEcCCCCEEEEEEHHHHHHhhhhhhh----hcCCcHHHhc-------------
Confidence 35678999999999999999999999999988999999999999874332211 2235677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++..++++.++++.|.+++..++||+|+ +|+++|+||..||++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 65 NSPVITIDANDSIAKARWLMSNNNISRLPVLDD-KGKVGGIVTEDDILR 112 (113)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCCeeeEECC-CCeEEEEEEHHHhhc
Confidence 557889999999999999999999999999995 889999999999975
No 32
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.44 E-value=1.8e-12 Score=107.30 Aligned_cols=95 Identities=17% Similarity=0.354 Sum_probs=85.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
+++++.++.++.+|++.|.+++++.+||+|++|+++|+++.+|+....
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~-------------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLDDDGKLSGIITERDLIAKS-------------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEECCCCCEEEEEEHHHHhcCC--------------------------------
Confidence 567899999999999999999999999999899999999999997621
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
.+.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||.+||+++
T Consensus 50 --~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~-~~~~~Giit~~di~~~ 96 (96)
T cd04614 50 --EVVTATKRTTVSECAQKMKRNRIEQIPIING-NDKLIGLLRDHDLLKP 96 (96)
T ss_pred --CcEEecCCCCHHHHHHHHHHhCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence 1567999999999999999999999999995 7899999999999864
No 33
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.44 E-value=2.7e-12 Score=109.37 Aligned_cols=114 Identities=18% Similarity=0.299 Sum_probs=92.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-CcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-NLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l-~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
+++++.+++++.++++.|.+.+++.+||+|++|+++|+++.+|+++.......... .+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~v~~~~------------ 69 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLDKEGKYVGTISLTDILWKLKGLENLDLERLVDLKVIDVM------------ 69 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeECCCCcEEEEEeHHHHHHHhhccCchhHHHHhCCcHHHHh------------
Confidence 46789999999999999999999999999988999999999999886543211110 00134677766
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
...+.++.+++++.+|++.|.+.+ .+||+|+ +|+++|+||..|++++
T Consensus 70 -~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~-~~~~~Gvit~~dil~~ 116 (116)
T cd04643 70 -NTDVPVIIDDADIEEILHLLIDQP--FLPVVDD-DGIFIGIITRREILKA 116 (116)
T ss_pred -cCCCceecCCCCHHHHHHHHhcCC--ceeEEeC-CCeEEEEEEHHHhhcC
Confidence 567889999999999999998865 5999995 8999999999999864
No 34
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.43 E-value=1.4e-12 Score=130.01 Aligned_cols=119 Identities=14% Similarity=0.409 Sum_probs=100.8
Q ss_pred cCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcC
Q 010368 373 IGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 449 (512)
Q Consensus 373 v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~ 449 (512)
|+++|.+ ++.++..++++.++++.+.+.+++++||++++ ++++|+++.+|++....... ...++.+++
T Consensus 69 V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~~~~d~iiGiv~~kDll~~~~~~~------~~~~l~~l~--- 139 (292)
T PRK15094 69 VRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHIEGILMAKDLLPFMRSDA------EAFSMDKVL--- 139 (292)
T ss_pred EeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEecCCCCcEEEEEEHHHHHhHhhccC------CcCCHHHHc---
Confidence 4444876 68999999999999999999999999999876 78999999999986543211 113466665
Q ss_pred CCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 450 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 450 ~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
+++.++.+++++.++++.|.+++.+.+||+|+ .|.++|+||+.||+..|+|
T Consensus 140 -----------r~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe-~G~viGiVTleDIle~ivG 190 (292)
T PRK15094 140 -----------RQAVVVPESKRVDRMLKEFRSQRYHMAIVIDE-FGGVSGLVTIEDILELIVG 190 (292)
T ss_pred -----------CCCcCcCCCCcHHHHHHHHHhcCCEEEEEEeC-CCCEEEEeEHHHHHHHHhC
Confidence 34668999999999999999999999999995 8999999999999999876
No 35
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.43 E-value=1.9e-12 Score=109.18 Aligned_cols=105 Identities=20% Similarity=0.353 Sum_probs=93.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..++.... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~----------~~~~v~~~~------------- 59 (108)
T cd04596 3 DTGYLTTTDTVKDWHELNKETGHSRFPVVDEKNKVVGIVTSKDVAGKD----------PDTTIEKVM------------- 59 (108)
T ss_pred ccEEeCCCCCHHHHHHHHHHcCCCceeEECCCCeEEEEecHHHHhccc----------ccccHHHHh-------------
Confidence 567899999999999999999999999999999999999999997521 124678876
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+++.+.+||+++ +|+++|+||..|+++
T Consensus 60 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~G~it~~di~~ 107 (108)
T cd04596 60 TKNPITVNPKTSVASVAHMMIWEGIEMLPVVDD-NKKLLGIISRQDVLK 107 (108)
T ss_pred cCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcC-CCCEEEEEEHHHhhc
Confidence 557889999999999999999999999999995 899999999999986
No 36
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.43 E-value=3.8e-12 Score=107.80 Aligned_cols=110 Identities=16% Similarity=0.370 Sum_probs=95.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++..+.++.++.++++.|.+.+++++||+|++|+++|+++..|+++.+.... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~l~~~~~~~~-----~~~~~v~~~~------------- 63 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVDPDERPIGIVTERDIVRAVAAGI-----DLDTPVSEIM------------- 63 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEeeHHHHHHHHhccC-----CCccCHHHhc-------------
Confidence 4568899999999999999999999999998899999999999987655432 1234677765
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++..++++.++++.|.+++...+||+++ +|+++|+||.+||++
T Consensus 64 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~g~~~Gilt~~dl~~ 111 (112)
T cd04624 64 TRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDK-GGELVGVISIRDLVR 111 (112)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCccEEEEEcC-CCcEEEEEEHHHhcc
Confidence 567889999999999999999999999999995 799999999999986
No 37
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.43 E-value=4.3e-12 Score=107.16 Aligned_cols=108 Identities=24% Similarity=0.402 Sum_probs=94.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.++++.|.+.+++++||+++ ++++|+++..|+++....+. ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~~l~~~~~~~~------~~~~v~~~~------------- 61 (110)
T cd04588 2 PLITLNPNATLREAARLFNTHHIHGAPVVDD-GKLVGIVTLSDIAHAIARGL------ELAKVKDVM------------- 61 (110)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccc------cccCHHHHh-------------
Confidence 5678999999999999999999999999998 99999999999998655431 124677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+.+.+.+||+++ +|+++|+||..||++
T Consensus 62 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~ 109 (110)
T cd04588 62 TKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDD-EGRPVGIITRTDILR 109 (110)
T ss_pred cCCceEECCCCCHHHHHHHHHhcCCCEEEEECC-CCCEEEEEEhHHhhc
Confidence 457899999999999999999999999999995 799999999999975
No 38
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.43 E-value=3.1e-12 Score=108.57 Aligned_cols=112 Identities=16% Similarity=0.339 Sum_probs=95.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..++.+++..... ....++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~~i~~~~~~~~~----~~~~~v~~~~------------- 65 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVDEDGRLVGIFTDGDLRRALEKGLD----ILTLPVADVM------------- 65 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEcCCCCEEEEechHHHHHHHhccCc----cccCCHHHhh-------------
Confidence 45678999999999999988889999999988999999999999987654321 2234678777
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.+++++|..++...+||+++ +++++|+||..||+++
T Consensus 66 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~iG~it~~di~~~ 114 (114)
T cd04604 66 TRNPKTIDPDALAAEALELMEENKITALPVVDD-NGRPVGVLHIHDLLRA 114 (114)
T ss_pred ccCCeEECCCCcHHHHHHHHHHcCCCEEEEECC-CCCEEEEEEHHHhhcC
Confidence 456789999999999999999999999999995 7999999999999863
No 39
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.43 E-value=3.4e-12 Score=108.19 Aligned_cols=112 Identities=19% Similarity=0.393 Sum_probs=95.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.++++.|.+.+++.+||+|++|+++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~----~~~~~v~~~~------------- 64 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVDDDGRLVGIVSLDDIREILFDPSL----YDLVVASDIM------------- 64 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEECCCCCEEEEEEHHHHHHHHhcccc----cccEEHHHhc-------------
Confidence 56789999999999999999999999999988999999999999876543311 1225777776
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCC-CCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAG-SKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~-~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|...+.+.+||+| + .++++|+||..||+++
T Consensus 65 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~-~~~~~~~Gvvt~~di~~~ 114 (114)
T cd04613 65 TKPPVVVYPEDSLEDALKKFEDSDYEQLPVVD-DDPGKLLGILSRSDLLSA 114 (114)
T ss_pred cCCCcEEcCCCCHHHHHHHHhhCCccEeeEEe-CCCCEEEEEEEhHHhhcC
Confidence 56789999999999999999999999999998 3 5899999999999863
No 40
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=3.5e-12 Score=111.00 Aligned_cols=117 Identities=24% Similarity=0.424 Sum_probs=93.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-cc--------cCcccccHHHHHhcCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AH--------INLSEMTIHQALQLGQ 450 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~-~~--------l~~~~~~v~~~l~~~~ 450 (512)
++.++.++.++.+|+++|.+.+.+.+||+|++|+++|+++..|+..+...... .. ....+.++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---- 77 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVDDNGKLTGIVTRHDIVDFVVRDRDKARTGDRSGEKERMLDLPVYDAM---- 77 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEECCCCcEEEEEEHHHHHHHHhhhhhhcchhhhhhhhhhhccCcHHHHh----
Confidence 45678999999999999999999999999999999999999999875432110 00 001123455555
Q ss_pred CCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeC-CCCeEEEEEehHHHHHH
Q 010368 451 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA-GSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 451 ~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~-~~~~liGiIS~~DIl~~ 509 (512)
..+++++.+++++.++++.|.+++.+.+||++. ++++++|+||.+||+++
T Consensus 78 ---------~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~~ 128 (128)
T cd04632 78 ---------SSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLRA 128 (128)
T ss_pred ---------cCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhcC
Confidence 667899999999999999999999999999851 36999999999999864
No 41
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=4.4e-12 Score=107.35 Aligned_cols=109 Identities=20% Similarity=0.332 Sum_probs=93.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++++.|.+.+.+.+||+|++|+++|+++..|+..+..... +.+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~~-----~~~~~v~~~~------------- 63 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKDNEEKLKGVVTFTDILDLDLFES-----FLEKKVFNIV------------- 63 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEcCCCCEEEEEehHHhHHHHhhcc-----cccCcHHHHh-------------
Confidence 4568899999999999999999999999998899999999999987654321 1134677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
.+++.++.+++++.+|++.|.+++..++||+|+ |+++|+||..||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~--~~~~G~it~~di~~ 110 (111)
T cd04626 64 SQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD--NKLIGVVRTKDILD 110 (111)
T ss_pred cCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC--CEEEEEEEhHHhcc
Confidence 567889999999999999999999999999993 89999999999974
No 42
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.42 E-value=3.3e-12 Score=107.09 Aligned_cols=105 Identities=20% Similarity=0.245 Sum_probs=90.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.+|++.|.+.+.+.+||+|++|+++|+++..|+..... .++.+++
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d~~g~~~Giv~~~dl~~~~~-----------~~~~~~~------------- 57 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVDADGQPLGFVTRREAARASG-----------GCCGDHA------------- 57 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEECCCCCEEEEEeHHHHHHhcc-----------cchhhhc-------------
Confidence 4568899999999999999899999999998899999999999986421 1355554
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
...+.++.+++++.++++.|.+++...+||+|+ +++++|+||..|++++
T Consensus 58 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~~l~~~ 106 (106)
T cd04582 58 EPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDE-DGRYVGEVTQRSIADY 106 (106)
T ss_pred ccCCEEECCCCCHHHHHHHHHHCCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence 456778999999999999999999999999995 7899999999999863
No 43
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.4e-12 Score=111.35 Aligned_cols=119 Identities=13% Similarity=0.251 Sum_probs=90.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++.++.+++++.+|++.|.+++++++||+|++ |+++|+++..|+++....+... .+..+.... . .......
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~-~-~~~~~~~ 73 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTEEESGEVIGILSQRRLVEFLWENARS------FPGLDPLYP-I-PLRDLTI 73 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEeCCCCcEEEEEEHHHHHHHHHHhHHh------ccchhhhhh-h-hhhhccc
Confidence 46788999999999999998899999999987 9999999999998865332110 011110000 0 0000013
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIF 507 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl 507 (512)
|..++.++.+++++.+|++.|.+++.+++||+|+ +|+++|+||++||-
T Consensus 74 ~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~~~~vGiit~~di~ 121 (123)
T cd04627 74 GTSDVISINGDQPLIDALHLMHNEGISSVAVVDN-QGNLIGNISVTDVR 121 (123)
T ss_pred CcCCceEeCCCCCHHHHHHHHHHcCCceEEEECC-CCcEEEEEeHHHhh
Confidence 4667899999999999999999999999999995 79999999999984
No 44
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.42 E-value=5.8e-12 Score=106.60 Aligned_cols=110 Identities=20% Similarity=0.301 Sum_probs=93.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
+++.+.++.++.++++.|.+.+...++|+|+ |+++|+++..|+......... ..+.++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRDG-DPRLGIVTRTDLLDAVLLDGL----PSSTPVGEIA------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEecC-CeEEEEEEHHHHHHHHHcCCC----CCCCCHHHHh-------------
Confidence 4567899999999999999889999999997 899999999999876543211 1235677776
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+++.+.+||+| +++++|+||..|+++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~dl~~~ 111 (111)
T cd04589 64 TFPLITVDPDDFLFNALLLMTRHRIHRVVVRE--GGEVVGVLEQTDLLSF 111 (111)
T ss_pred CCCcEEECCCCcHHHHHHHHHHhCccEEEEee--CCEEEEEEEhHHhhcC
Confidence 55788999999999999999999999999999 4899999999999875
No 45
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.42 E-value=4e-12 Score=112.27 Aligned_cols=115 Identities=15% Similarity=0.280 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc-------------------Ccccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI-------------------NLSEM 440 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l-------------------~~~~~ 440 (512)
++.++.+++++.+|++.|.+.+.+.+||+|++|+++|+++..|+++.......... .....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 81 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVDDNGKPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRYVKEVPL 81 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEECCCCCEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccccccccc
Confidence 45678999999999999999999999999999999999999999986543211100 00123
Q ss_pred cHHHHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 441 TIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 441 ~v~~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
++.+++ ..++.++.+++++.++++.|.+++.+++||++ +|+++|+||.+||+++
T Consensus 82 ~v~~~~-------------~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~--~~~~~Gvit~~di~~~ 135 (135)
T cd04621 82 VAEDIM-------------TEEIITVSPNDDVVDAAKLMLEANISGLPVVD--NDNIVGVITKTDICRE 135 (135)
T ss_pred cHHHhc-------------CCCCeEECCCCCHHHHHHHHHHcCCCEEEEEe--CCEEEEEEEHHHHhhC
Confidence 555554 56788999999999999999999999999999 4899999999999863
No 46
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.42 E-value=2.8e-12 Score=108.90 Aligned_cols=113 Identities=19% Similarity=0.351 Sum_probs=94.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++++.|.+.+.+.+||+|++++++|+++..|+++......+.. ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~v~~~~l~~~~~~~~~~~--~~~~~v~~~~------------- 66 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVDDNGNLVGFLSEQDCLKQLLESSYHC--DGVATVRDIM------------- 66 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEECCCCeEEEEeehHHHHHHhhhhhhcc--CCCccHHHHh-------------
Confidence 4678899999999999999888999999999999999999999987554322111 1235677776
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+++.+.+||+| +|+++|+||..||+++
T Consensus 67 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Gvit~~di~~~ 114 (114)
T cd04629 67 TTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVD--DGKLVGQISRRDVLRA 114 (114)
T ss_pred ccCceEECCCCcHHHHHHHHHHhCCCccCEEE--CCEEEEEEEHHHHhcC
Confidence 45788899999999999999999999999999 3899999999999864
No 47
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.42 E-value=5.9e-12 Score=106.38 Aligned_cols=107 Identities=24% Similarity=0.475 Sum_probs=93.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++..+.++.+|.+.|.+.+.+++||+|+ |+++|+++..|+....... +...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~dl~~~~~~~------~~~~~~~~~~------------- 62 (110)
T cd04595 3 PVKTVRPEATIEEARELLLRYGHTALPVVEG-GRVVGIISRRDVEKALRHG------LGHAPVKDYM------------- 62 (110)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCeeeEeeC-CEEEEEEEHHHHHHHHhcc------cccCcHHHHh-------------
Confidence 5678999999999999999889999999998 9999999999998765332 1245788877
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.+++++|.+++.+++||++ +|+++|+||..||++
T Consensus 63 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvvt~~di~~ 109 (110)
T cd04595 63 STDVVTVPPDTPLSEVQELMVEHDIGRVPVVE--DGRLVGIVTRTDLLR 109 (110)
T ss_pred cCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe--CCEEEEEEEhHHhhc
Confidence 55788999999999999999999999999999 689999999999985
No 48
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.42 E-value=5.3e-12 Score=106.19 Aligned_cols=106 Identities=18% Similarity=0.367 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++..+.++.++.++++.|.+.++.++||+|++++++|+++..|+....... .++.++|
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~~~~~~G~v~~~dl~~~~~~~---------~~v~~~~------------- 60 (109)
T cd04583 3 NPVTITPDRTLAEAIKLMRDKKVDSLLVVDKDNKLLGIVSLESLEQAYKEA---------KSLEDIM------------- 60 (109)
T ss_pred CCEEECCCCCHHHHHHHHHHCCCceEEEEcCCCcEEEEEEHHHHHHHhhcC---------CcHhHhh-------------
Confidence 467789999999999999999999999999889999999999998754221 3566665
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
...+.++.+++++.++++.|.+.+.+++||+++ +|+++|+||..|+++
T Consensus 61 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~-~g~~~Gvit~~~l~~ 108 (109)
T cd04583 61 LEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDE-DGKLVGLITRSSLVD 108 (109)
T ss_pred cCCceEECCCCcHHHHHHHHHHcCCceeeEECC-CCeEEEEEehHHhhc
Confidence 457889999999999999999999999999995 899999999999975
No 49
>COG3620 Predicted transcriptional regulator with C-terminal CBS domains [Transcription]
Probab=99.42 E-value=1.7e-12 Score=112.64 Aligned_cols=119 Identities=19% Similarity=0.391 Sum_probs=100.0
Q ss_pred CCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccc
Q 010368 283 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 362 (512)
Q Consensus 283 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~ 362 (512)
+..+|..+++++.|++++.+|+++|.+++++.+||++ + + +++|-+|..+|.+.+.+.. ..++
T Consensus 67 a~~iM~spvv~v~pdDsi~~vv~lM~~~g~SQlPVi~---~-~---k~VGsItE~~iv~~~le~~-----------e~i~ 128 (187)
T COG3620 67 AKTIMHSPVVSVSPDDSISDVVNLMRDKGISQLPVIE---E-D---KVVGSITENDIVRALLEGM-----------ESIR 128 (187)
T ss_pred HhhhccCCeeEECchhhHHHHHHHHHHcCCccCceee---C-C---eeeeeecHHHHHHHHhccc-----------cchh
Confidence 4567999999999999999999999999999999994 2 3 8999999999998876542 1233
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 010368 363 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 429 (512)
Q Consensus 363 ~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~ 429 (512)
++ +++++|..++.++++++++..+-+++..+. ++.|+ ++|+++||||+.|++++.+.
T Consensus 129 ~~-------~vr~vM~e~fP~Vs~~~~l~vI~~LL~~~~--AVlV~-e~G~~vGIITk~DI~k~~~~ 185 (187)
T COG3620 129 SL-------RVREVMGEPFPTVSPDESLNVISQLLEEHP--AVLVV-ENGKVVGIITKADIMKLLAG 185 (187)
T ss_pred hh-------hHHHHhcCCCCcCCCCCCHHHHHHHHhhCC--eEEEE-eCCceEEEEeHHHHHHHHhc
Confidence 33 556669999999999999999888886554 78888 68999999999999997654
No 50
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.41 E-value=6.1e-12 Score=106.38 Aligned_cols=108 Identities=18% Similarity=0.352 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++.++.++.++.+|++.|.+.+.+.+||++++ |+++|+++..|++........ ..++..++
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~~~~~~~~G~v~~~~l~~~~~~~~~------~~~~~~~~------------ 63 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYDGDLDNIIGVVHVKDLLRALAEGEE------DLDLRDLL------------ 63 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEECCCCceEEEEEEHHHHHHHHHcCCC------cCCHHHHh------------
Confidence 45789999999999999999899999999988 999999999999987654321 13455543
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
.++.++.+++++.++++.|.+++.+.+||+|+ +|+++|+||++|+++
T Consensus 64 --~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~di~~ 110 (111)
T cd04590 64 --RPPLFVPESTPLDDLLEEMRKERSHMAIVVDE-YGGTAGLVTLEDILE 110 (111)
T ss_pred --cCCeecCCCCcHHHHHHHHHhcCCcEEEEEEC-CCCEEEEeEHHHhhc
Confidence 35788999999999999999999999999995 899999999999975
No 51
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.41 E-value=3.4e-12 Score=109.87 Aligned_cols=116 Identities=20% Similarity=0.355 Sum_probs=94.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc----CcccccHHHHHhcCCCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI----NLSEMTIHQALQLGQDSYS 454 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~-~~l----~~~~~~v~~~l~~~~~~~~ 454 (512)
++.++.++.++.++++.|.+.+++++||+|++|+++|+++..|++........ ... .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------- 73 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQKAGELIGIITRRDIIRAGSVRTSVEDQQRTQTKASPTVEKIM-------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEECCCCcEEEEEEcHHHHhhccccccccchhhhhhhccCcHHHHh--------
Confidence 46789999999999999998999999999989999999999999864211100 000 01134556655
Q ss_pred CccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 455 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 455 ~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++..++++.++++.|.+++.+.+||+|+ +|+++|++|..||+++
T Consensus 74 -----~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~g~~~Gvit~~dl~~~ 122 (122)
T cd04635 74 -----STPVYSVTPDDSIATAVELMLEHDIGRLPVVNE-KDQLVGIVDRHDVLKA 122 (122)
T ss_pred -----cCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcC-CCcEEEEEEhHHhhcC
Confidence 567899999999999999999999999999995 7999999999999864
No 52
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.41 E-value=2.3e-12 Score=135.96 Aligned_cols=114 Identities=14% Similarity=0.216 Sum_probs=101.0
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCC
Q 010368 373 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDS 452 (512)
Q Consensus 373 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~ 452 (512)
+.++|.++++++.+++++.+++++|.+++++++||+|++++++|+|+.+|+.... ...++.++|
T Consensus 91 v~~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD~~gklvGIVT~rDL~~~~----------~~~~V~diM------ 154 (479)
T PRK07807 91 SRDLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVDEEGRPVGVVTEADCAGVD----------RFTQVRDVM------ 154 (479)
T ss_pred cccccccCCeEECCCCCHHHHHHHHHhcCCceEEEECCCCeEEEEEeHHHHhcCc----------cCCCHHHhc------
Confidence 3455888999999999999999999999999999999999999999999985321 124678877
Q ss_pred CCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 453 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 453 ~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
..++.++.+++++.+|++.|.+++++.+||||+ +++++|+||.+||++..
T Consensus 155 -------t~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~-~g~lvGIIT~~DIl~~~ 204 (479)
T PRK07807 155 -------STDLVTLPAGTDPREAFDLLEAARVKLAPVVDA-DGRLVGVLTRTGALRAT 204 (479)
T ss_pred -------cCCceEECCCCcHHHHHHHHHhcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 678999999999999999999999999999996 89999999999999864
No 53
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.41 E-value=5.3e-12 Score=107.54 Aligned_cols=110 Identities=20% Similarity=0.336 Sum_probs=90.6
Q ss_pred CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++.++.++.++.++++.|...+ ...++|+| +|+++|+++..|+++....+.. ....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~~----~~~~~i~~~~------------ 64 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE-KGRLLGIFTERDIVRLTAIGKD----LSDLPIGEVM------------ 64 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC-CCcEEEEEeHHHHHHHHhcCCC----ccccCHHHhc------------
Confidence 4567899999999999998888 66777777 5899999999999876543211 1235677766
Q ss_pred cCCcceEEcCC--CCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 459 RSQRCQMCLPS--DTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 459 ~~~~~~tv~~~--~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.++ +++.+|++.|.+++...+||+|+ +|+++|+||..|+++
T Consensus 65 -~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~-~~~~~Gvit~~dl~~ 114 (115)
T cd04620 65 -TQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDD-QGQLIGLVTAESIRQ 114 (115)
T ss_pred -CCCcEEEecccccCHHHHHHHHHHhCCceEEEEcC-CCCEEEEEEhHHhhc
Confidence 4567788876 78999999999999999999996 899999999999986
No 54
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.40 E-value=5.3e-12 Score=110.65 Aligned_cols=115 Identities=17% Similarity=0.340 Sum_probs=93.3
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccC----------------cccccHH
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN----------------LSEMTIH 443 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~----------------~~~~~v~ 443 (512)
++.++.+++++.++++.|.+.+++++||+|++++++|+++..|+............. +...++.
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 81 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVDNEGRVVGIVSEGDLIRKIYKGKGLFYVTLLYSVIFLDESKIKKLLGKKVE 81 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceECCCCCEEEEEeHHHHHHHHhccCCcccccccccccccchHHHHHHcCCCHH
Confidence 467899999999999999988999999999999999999999998866432110000 0001444
Q ss_pred HHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 444 QALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 444 ~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
+++ .+++.++.+++++.++++.|.+.+.+++||+|+ |+++|+||.+|+++|
T Consensus 82 ~~~-------------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~--~~~iGvit~~dl~~~ 132 (132)
T cd04636 82 EIM-------------TKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD--GKLVGIISRGDIIRS 132 (132)
T ss_pred Hhc-------------cCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC--CEEEEEEEHHHhhcC
Confidence 443 567899999999999999999999999999993 999999999999875
No 55
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.40 E-value=1.5e-12 Score=134.03 Aligned_cols=120 Identities=23% Similarity=0.382 Sum_probs=107.3
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH-HhcccccccCcccccHHHHHhcC
Q 010368 371 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-AKDKAYAHINLSEMTIHQALQLG 449 (512)
Q Consensus 371 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~-~~~~~~~~l~~~~~~v~~~l~~~ 449 (512)
.++++++..+++++.+.+++.+|.+.|.+.|++++.++++++...||||++|+... ++++. ....+|+++|
T Consensus 149 trv~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~~~~~~~GIvT~~dl~~~v~~~g~-----~~~~~V~evm--- 220 (610)
T COG2905 149 TRVGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLDDSGPLLGIVTRKDLRSRVIADGR-----SKTQKVSEVM--- 220 (610)
T ss_pred HHHHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEcCCCCccceeehHHHHHHHHhcCC-----Ccccchhhhh---
Confidence 35677789999999999999999999999999999999999999999999999974 44332 2346888877
Q ss_pred CCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 450 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 450 ~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
+.+++++...+.+.+|+-+|.++++++|||.+ +|+++|+||.+||++.+
T Consensus 221 ----------T~p~~svd~~~~~feAml~m~r~~I~hl~V~e--~gq~~Gilt~~dIl~l~ 269 (610)
T COG2905 221 ----------TSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE--DGQPLGILTLTDILRLF 269 (610)
T ss_pred ----------ccCceeecCcchHHHHHHHHHHhCCceeeeec--CCeeeEEeeHHHHHHhh
Confidence 78999999999999999999999999999998 69999999999999875
No 56
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.40 E-value=3.6e-12 Score=112.14 Aligned_cols=115 Identities=21% Similarity=0.372 Sum_probs=93.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc------c------------cCccccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA------H------------INLSEMT 441 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~------~------------l~~~~~~ 441 (512)
++.++.++.++.++++.|.+.+++++||+|++++++|+++..|+.+........ . ......+
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~~~~~~Gvi~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 82 (135)
T cd04586 3 DVVTVSPETSVAEAARLMLDNHISGLPVVDDDGRLVGIVSEGDLLRRAELGTERRRARWLDLLAGAEELAAAFVRSHGRK 82 (135)
T ss_pred CCEEeCCCCCHHHHHHHHHHcCCCCceEECCCCCEEEEeeHHHHHHHhcccCcchhhhHHHHhcchHHHHHHHHHhcCCC
Confidence 567899999999999999999999999999889999999999998754322100 0 0001234
Q ss_pred HHHHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 442 IHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 442 v~~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
+.+++ ..++.++.+++++.++++.|.+.+.+++||+| +|+++|+||+.|++++
T Consensus 83 v~~~~-------------~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd--~g~~~Gvit~~di~~~ 135 (135)
T cd04586 83 VADVM-------------TRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR--GGRLVGIVSRADLLRA 135 (135)
T ss_pred HHHHh-------------CCCceEeCCCCcHHHHHHHHHHcCCCccCEec--CCEEEEEEEhHhhhcC
Confidence 55544 56789999999999999999999999999999 6899999999999864
No 57
>cd04641 CBS_pair_28 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=5.5e-12 Score=108.55 Aligned_cols=119 Identities=21% Similarity=0.332 Sum_probs=92.5
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.+++++.+|++.|.+++++++||++ . +| +++|+++.+|++++....... ....++...-
T Consensus 1 ~~~~~i~~~~~l~~a~~~~~~~~~~~~pVv~--~-~~---~~~Giv~~~dl~~~~~~~~~~------~~~~~~~~~~--- 65 (120)
T cd04641 1 KNIATARPDTPLIDVLDMLVERRVSALPIVD--E-NG---KVVDVYSRFDVINLAKEGAYN------NLDLTVGEAL--- 65 (120)
T ss_pred CCcEEEcCCCCHHHHHHHHHHcCCCeeeEEC--C-CC---eEEEEEeHHHHHHHHhcCccc------cccCCHHHHH---
Confidence 4688999999999999999999999999994 3 34 799999999999765432110 0011111100
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.....|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||++|++.
T Consensus 66 ---~~~~~~~~~~~~v~~~~~l~~~~~~m~~~~~~~l~Vvd~~~~~~Givt~~di~~ 119 (120)
T cd04641 66 ---ERRSQDFEGVRTCSPDDCLRTIFDLIVKARVHRLVVVDENKRVEGIISLSDILQ 119 (120)
T ss_pred ---hhcccCCCCCeEEcCCCcHHHHHHHHHhcCccEEEEECCCCCEEEEEEHHHhhc
Confidence 112235567889999999999999999999999999998899999999999875
No 58
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.39 E-value=8.7e-12 Score=105.25 Aligned_cols=109 Identities=23% Similarity=0.348 Sum_probs=94.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.+|++.|.+.+.+.+||+++ ++++|+++..|+.+....... ...++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~~l~~~~~~~~~-----~~~~v~~~~------------- 62 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVDD-GRPLGIVTERDILRLLASGPD-----LQTPVGEVM------------- 62 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEeHHHHHHHHhcCCC-----CCcCHHHhc-------------
Confidence 4567899999999999999888999999986 999999999999886644321 235677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||.+||++
T Consensus 63 ~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~di~~ 110 (111)
T cd04611 63 SSPLLTVPADTSLYDARQLMREHGIRHLVVVDD-DGELLGLLSQTDLLQ 110 (111)
T ss_pred CCCceEECCCCCHHHHHHHHHHcCCeEEEEECC-CCcEEEEEEhHHhhc
Confidence 567889999999999999999999999999995 799999999999975
No 59
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.39 E-value=3.9e-12 Score=110.63 Aligned_cols=112 Identities=22% Similarity=0.419 Sum_probs=89.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH-----HhcccccccCcccccHHHHHhcCCCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL-----AKDKAYAHINLSEMTIHQALQLGQDSYS 454 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~-----~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 454 (512)
++.++..++++.+|++.|.+++.+.+||+|++|+++|+++..|+... ...+ ...+...++.++|
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d~~~~~~Giv~~~dl~~~~~~~~~~~~---~~~~~~~~v~~im-------- 70 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVDSDDNFIGVITAVDLLGEEPIKRIQEG---GISRSELTVADVM-------- 70 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEcCCCcEEEEEEHHHHhhChhhHHHHHc---CCCchheEHHHhc--------
Confidence 46789999999999999998999999999988999999999999852 1111 0112245688877
Q ss_pred CccccCCcce--EE----cCCCCHHHHHHHHhcCCCcEEEEEeCCC-CeEEEEEehHHHHH
Q 010368 455 PYELRSQRCQ--MC----LPSDTLHKVMERLANPGVRRLVIVEAGS-KRVEGIVSLSDIFK 508 (512)
Q Consensus 455 ~~~~~~~~~~--tv----~~~~tL~~a~~~m~~~~~~~l~VVd~~~-~~liGiIS~~DIl~ 508 (512)
..+.. .+ .+++++.++++.|.+++.+++||+|+ + |+++|+||++||++
T Consensus 71 -----~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~-~~~~~~G~it~~di~~ 125 (126)
T cd04640 71 -----TPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDR-EHHQIRGIISTSDIAR 125 (126)
T ss_pred -----CchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEEC-CCCEEEEEEeHHHHhh
Confidence 22332 23 36899999999999999999999995 5 79999999999986
No 60
>KOG1764 consensus 5'-AMP-activated protein kinase, gamma subunit [Energy production and conversion]
Probab=99.39 E-value=1.7e-11 Score=125.92 Aligned_cols=197 Identities=15% Similarity=0.193 Sum_probs=148.7
Q ss_pred EEEEeCCCCHHHHHHHHHHcCCcEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCCCCCChhhHhhhhHHHHHHhhhhhcc
Q 010368 199 VVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNR 278 (512)
Q Consensus 199 vv~ld~~~~v~~A~~~l~e~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~ 278 (512)
.+.+.+..++.+|...|.+++++++||.|.+.+..+.++|..-++.++...... +....+-..++.+.
T Consensus 164 ~~~i~p~~s~l~~~~~l~~~~~~rvpv~d~~~~~v~~ilt~~rIl~~l~~~~~~---~~~~~~l~~s~~dl--------- 231 (381)
T KOG1764|consen 164 FVSISPESSLLDAVLLLIKSRIHRVPVIDPETGEVLYILTQRRILKFLWLNGRL---LPLPSLLSKSLSDL--------- 231 (381)
T ss_pred ceeecCcHHHHHHHHHHHhCCccceeeecccccceeeehhHHHHHHHHHHhhcc---cccHHHhhCCHHHh---------
Confidence 389999999999999999999999999998888999999999999888544332 21223333333332
Q ss_pred ccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCccccc
Q 010368 279 QIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK 358 (512)
Q Consensus 279 ~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~ 358 (512)
++| ....++.+..++++.+|+++|.+++++.+||++ ..+ +.+|.++..|+........-. .+.
T Consensus 232 ---~ig--~~~~i~~i~~~~~v~~al~~m~~~~is~lpvV~--~~g----~~v~~~s~~Dv~~l~~~~~~~------~~~ 294 (381)
T KOG1764|consen 232 ---GIG--TWSNIASISEDTPVIEALKIMSERRISALPVVD--ENG----KKVGNYSRFDVIHLAREGTYN------NLD 294 (381)
T ss_pred ---Ccc--hhhhheeecCCCcHHHHHHHHHhcCcCcceEEc--CCC----ceecceehhhhhhhhhcCccC------ccc
Confidence 112 234799999999999999999999999999994 444 569999999997666543111 111
Q ss_pred Cc-cccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 010368 359 LP-ICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 430 (512)
Q Consensus 359 ~~-v~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~ 430 (512)
.. ++. +.. ....-...++++.++.++.+++..|..++++++.|||++|.++|+||.+|++..+...
T Consensus 295 ~~~l~~-----~~~-~~~~~~~~vvtc~~~ssL~~vi~~lv~~~vHRl~VVd~~~~l~GvvSLsDil~~l~~~ 361 (381)
T KOG1764|consen 295 LSCLSE-----ALS-HRPIRFEGVVTCRPTSTLAEVIDKLVAHRVHRLWVVDEDGVLVGVISLSDILSYLVLT 361 (381)
T ss_pred hhHHHH-----Hhh-hcccccCccEEEeecchHHHHHHHHHhcCceEEEEEcCCCcEEEEeeHHHHHHHHHhC
Confidence 11 111 110 0111234579999999999999999999999999999999999999999999876543
No 61
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.39 E-value=1.1e-11 Score=104.71 Aligned_cols=109 Identities=20% Similarity=0.390 Sum_probs=92.6
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++.+.|.+.+++.+||+|+ ++++|+++..|++........ ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~----~~~~~i~~~~------------- 63 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVDD-GRLVGIVTDRDLRNRVVAEGL----DPDTPVSEVM------------- 63 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHhccCC----CccCCHHHHh-------------
Confidence 5678899999999999999888999999987 999999999999874332211 1124677776
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+++..++||++ +|+++|+||..||++
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Giit~~di~~ 110 (111)
T cd04800 64 TAPPITIPPDATVFEALLLMLERGIHHLPVVD--DGRLVGVISATDLLR 110 (111)
T ss_pred CCCCeEECCCCcHHHHHHHHHHcCCCeeeEeE--CCEEEEEEEHHHhhc
Confidence 56788999999999999999999999999999 389999999999986
No 62
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.39 E-value=1e-11 Score=135.13 Aligned_cols=194 Identities=16% Similarity=0.169 Sum_probs=137.0
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCcc----
Q 010368 286 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI---- 361 (512)
Q Consensus 286 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v---- 361 (512)
+|.++++++.+++++.+|+++|.+++++.+||+| .+ | +++|+++..|+.+.+....... .......++
T Consensus 73 im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~-g---~l~Givt~~di~~~~~~~~~~~--~~~~~~~t~~~i~ 144 (546)
T PRK14869 73 LEIDKPVTVSPDTSLKEAWNLMDENNVKTLPVVD--EE-G---KLLGLVSLSDLARAYMDILDPE--ILSKSPTSLENII 144 (546)
T ss_pred hcCCCCcEECCCCcHHHHHHHHHHcCCCEEEEEc--CC-C---EEEEEEEHHHHHHHHHhhcchh--hhhhcCCCHHHHH
Confidence 4778999999999999999999999999999994 33 4 8999999999998776532100 000001111
Q ss_pred ------------------ccccCcccc-cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC-----------
Q 010368 362 ------------------CAIPVGTWV-PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN----------- 411 (512)
Q Consensus 362 ------------------~~l~ig~~~-~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~----------- 411 (512)
..+.++... ..+.+.+.+..+.+..+ -.+++..+.+.++++++|+...
T Consensus 145 ~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gd--r~d~~~~ai~~~~~~lIlt~g~~~~~~v~~la~ 222 (546)
T PRK14869 145 RTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGD--REDIQLAAIEAGVRLLIITGGAPVSEDVLELAK 222 (546)
T ss_pred HhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcC--cHHHHHHHHHcCCCEEEECCCCCCCHHHHHHHH
Confidence 111111110 11122233332333333 2344556788999999888643
Q ss_pred -CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccccC-CcceEEcCCCCHHHHHHHHhcCCCcEEEE
Q 010368 412 -DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVI 489 (512)
Q Consensus 412 -g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~-~~~~tv~~~~tL~~a~~~m~~~~~~~l~V 489 (512)
..+.+++|..|.......-. ...+|.++| . +++.++.+++++.++.+.|.+++.+++||
T Consensus 223 ~~~i~ii~t~~dt~~t~~~l~------~~~~V~~iM-------------~~~~~~~~~~~~~~~~~~~~m~~~~~~~~PV 283 (546)
T PRK14869 223 ENGVTVISTPYDTFTTARLIN------QSIPVSYIM-------------TTEDLVTFSKDDYLEDVKEVMLKSRYRSYPV 283 (546)
T ss_pred hCCCeEEEecccHHHHHHHhh------cCCCHHHhc-------------cCCCcEEECCCCcHHHHHHHHHhcCCCceEE
Confidence 25788888888877554321 236788877 5 67999999999999999999999999999
Q ss_pred EeCCCCeEEEEEehHHHHHH
Q 010368 490 VEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 490 Vd~~~~~liGiIS~~DIl~~ 509 (512)
||+ +|+++|+||..|+++.
T Consensus 284 vd~-~g~lvGiit~~dl~~~ 302 (546)
T PRK14869 284 VDE-DGKVVGVISRYHLLSP 302 (546)
T ss_pred EcC-CCCEEEEEEHHHhhcc
Confidence 996 8999999999999875
No 63
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.38 E-value=1e-11 Score=104.84 Aligned_cols=110 Identities=24% Similarity=0.410 Sum_probs=93.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++..+.+++++.++++.|.+.+.+.+||+|+ ++++|+++..|+......... ....+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~-----~~~~~~~~~------------- 62 (111)
T cd04612 2 DVVTVPVDLTVDEVLALMFGERHRGYPVVDD-GRLVGIVTLADIRRVPAEGRE-----ATVLVGDVM------------- 62 (111)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcceEeeC-CeEEEEEEHHHHHHHHhcCcc-----cccCHHHhc-------------
Confidence 5678999999999999999888999999997 999999999999876543211 012455554
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++..++++.++++.|.+++.+.+||+|+ +|+++|+||..||+++
T Consensus 63 ~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~ 111 (111)
T cd04612 63 TRDPVTASPDETLRDALKRMAERDIGRLPVVDD-SGRLVGIVSRSDLLRA 111 (111)
T ss_pred cCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcC-CCCEEEEEEHHHhhhC
Confidence 567899999999999999999999999999995 7999999999999863
No 64
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.38 E-value=1.5e-11 Score=104.16 Aligned_cols=111 Identities=14% Similarity=0.318 Sum_probs=91.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
.+.++.++.++.++++.|.+.+...++|.+ +|+++|+++.+|+++...... ..+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~-~~~~~G~v~~~dl~~~~~~~~---~~~~~~~v~~~~------------- 64 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME-RGELVGLLTFREVLQAMAQHG---AGVLDTTVRAIM------------- 64 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee-CCEEEEEEEHHHHHHHHHhcC---CchhcCCHHHHh-------------
Confidence 356789999999999999888887887775 599999999999987554321 112235678876
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.+|+++|.+++..++||++ +|+++|+||.+||+++
T Consensus 65 ~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~--~~~~~Gvvt~~dl~~~ 112 (112)
T cd04625 65 NPEPIVASPDDSIDEVRRLMVERHLRYLPVLD--GGTLLGVISFHDVAKA 112 (112)
T ss_pred CCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE--CCEEEEEEEHHHhhcC
Confidence 45688999999999999999999999999998 5899999999999864
No 65
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.38 E-value=8.3e-12 Score=105.80 Aligned_cols=111 Identities=15% Similarity=0.316 Sum_probs=92.4
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++++.|.+++.+.+||+++ ++++|+++..|++........ .....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~v~~i~------------- 64 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMDG-NKLVGIFTSKDIALRVVAQGL---DPESTLVERVM------------- 64 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEEC-CEEEEEEEhHHHHHHHHhcCC---CcCcCCHHHhc-------------
Confidence 4678899999999999999889999999987 999999999999853322111 11124677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+++.+++||+++ +++++|+||..||+.
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 65 TPNPVCATSDTPVLEALHLMVQGKFRHLPVVDK-SGQVVGLLDVTKLTH 112 (113)
T ss_pred CCCCeEEcCCCCHHHHHHHHHHcCCCcccEECC-CCCEEEEEEHHHhcc
Confidence 567889999999999999999999999999995 799999999999975
No 66
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.37 E-value=1.1e-11 Score=106.21 Aligned_cols=115 Identities=23% Similarity=0.376 Sum_probs=93.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccC------cccccHHHHHhcCCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN------LSEMTIHQALQLGQDSY 453 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~------~~~~~v~~~l~~~~~~~ 453 (512)
++.++.++.++.++++.|.+.++..+||+|+ |+++|+++..|+............. ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~i~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVDR-GKLVGIVTDRDLKLASPSKATTLDIWELYYLLSKIKVSDIM------- 73 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEecC-CeEEEEEeHHHHHHhhhcccccccchhhhhhhcccCHHHhc-------
Confidence 4678899999999999999999999999997 9999999999998765432110000 0123444444
Q ss_pred CCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 454 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 454 ~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+.+.+++||+++ +|+++|+||..||+++
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvvt~~di~~~ 122 (122)
T cd04585 74 ------TRDPITVSPDASVEEAAELMLERKISGLPVVDD-QGRLVGIITESDLFRA 122 (122)
T ss_pred ------cCCCeEeCCCCcHHHHHHHHHHcCCCceeEECC-CCcEEEEEEHHHhhhC
Confidence 567899999999999999999999999999995 7999999999999863
No 67
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.37 E-value=1.4e-11 Score=104.37 Aligned_cols=111 Identities=22% Similarity=0.399 Sum_probs=92.7
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH-HHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT-ALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~-~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++.++.+++++.+|++.|.+.+.+.+||+|+ |+++|+++..|++ +....+. .+...++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~i~~~~l~~~~~~~~~----~~~~~~~~~~~------------ 64 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCEN-DRLVGIVTDRDIVVRAVAEGR----DPDTTTVGDVM------------ 64 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEhHHHHHHHhhccC----CcccCCHHHhc------------
Confidence 4678999999999999999999999999997 9999999999987 3333221 11223477766
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
...+.++.+++++.++++.|...+.+++||+++ +|+++|+||..|++++
T Consensus 65 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~it~~di~~~ 113 (113)
T cd04622 65 -TRGVVTVTEDDDVDEAARLMREHQVRRLPVVDD-DGRLVGIVSLGDLARA 113 (113)
T ss_pred -cCCccEECCCCCHHHHHHHHHHcCCCeeeEECC-CCcEEEEEEHHHhhcC
Confidence 557888999999999999999999999999995 7999999999999863
No 68
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.36 E-value=1.2e-11 Score=105.51 Aligned_cols=106 Identities=25% Similarity=0.366 Sum_probs=89.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 456 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 456 (512)
++.++.+++++.++++.|.+.+...+||+|+ +|+++|+++..|+...... ..++.+++
T Consensus 3 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~~~~G~v~~~dl~~~~~~---------~~~v~~~~---------- 63 (114)
T cd04602 3 DPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGGKLLGIVTSRDIDFLTDS---------ETPLSEVM---------- 63 (114)
T ss_pred CCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCCEEEEEEEhHHhhhhhcc---------CCCHHHhc----------
Confidence 4568899999999999999889999999997 7899999999998753211 13577776
Q ss_pred cccCCcceEEcC--CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 457 ELRSQRCQMCLP--SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 457 ~~~~~~~~tv~~--~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
.....++.. ++++.++++.|.+++.+.+||||+ +|+++|+||..||++
T Consensus 64 ---~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~-~~~~~Gvit~~di~~ 113 (114)
T cd04602 64 ---TPREVLVVAPTGITLEEANEILRESKKGKLPIVND-DGELVALVTRSDLKK 113 (114)
T ss_pred ---CCCceEEECCCCCCHHHHHHHHHhcCCCceeEECC-CCeEEEEEEHHHhhc
Confidence 445566655 999999999999999999999995 899999999999975
No 69
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.36 E-value=7.7e-12 Score=105.37 Aligned_cols=106 Identities=21% Similarity=0.425 Sum_probs=90.1
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++..+..+.++.++++.|.+.+.+.+||+|++|+++|+++.+++..... ...++.+++
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~---------~~~~v~~~~------------- 60 (110)
T cd04601 3 DPITVSPDATVAEALELMAEYGISGLPVVDDDGKLVGIVTNRDLRFETD---------LDKPVSEVM------------- 60 (110)
T ss_pred CCeEeCCCCcHHHHHHHHHHcCCceEEEEcCCCEEEEEEEhhHeeeccc---------CCCCHHHhc-------------
Confidence 5678899999999999999899999999998899999999999864311 124677776
Q ss_pred CCcceEEcC-CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLP-SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~-~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
...+.++.. ++++.+++++|.+.+.+.+||+|+ +|+++|+||.+|+++
T Consensus 61 ~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvi~~~dil~ 109 (110)
T cd04601 61 TPENLLTTVEGTSLEEALELLHEHKIEKLPVVDD-EGKLKGLITVKDIEK 109 (110)
T ss_pred ccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcC-CCCEEEEEEhhhhhc
Confidence 344566666 999999999999999999999995 899999999999986
No 70
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.1e-11 Score=106.62 Aligned_cols=114 Identities=18% Similarity=0.386 Sum_probs=92.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc------cCcccccHHHHHhcCCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH------INLSEMTIHQALQLGQDSY 453 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~------l~~~~~~v~~~l~~~~~~~ 453 (512)
++.++.+++++.++++.|.+.+++++||+|+ |+++|+++..++........... ..+...++.+++
T Consensus 2 ~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (121)
T cd04633 2 PVITVSPDDRVSHARRLMLDHDISRLPVIEG-GKLVGIVTEKDIADALRSFRPLVRDRHQERRIRNLPVSDIM------- 73 (121)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeeEEEEC-CEEEEEEchHHHHHhhhhhhhcccchhhhhhhhccCHHHHc-------
Confidence 4678899999999999999999999999986 99999999999987544221100 011234555554
Q ss_pred CCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 454 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 454 ~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.+++++|.+.+.+.+||+| +|+++|+||..|++++
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~Gvi~~~dl~~~ 121 (121)
T cd04633 74 ------TRPVITIEPDTSVSDVASLMLENNIGGLPVVD--DGKLVGIVTRTDILRY 121 (121)
T ss_pred ------cCCceEECCCCcHHHHHHHHHHcCCCcccEEE--CCEEEEEEEHHHhhcC
Confidence 56788999999999999999999999999999 3899999999999864
No 71
>cd04627 CBS_pair_14 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.36 E-value=1.4e-11 Score=106.55 Aligned_cols=120 Identities=16% Similarity=0.276 Sum_probs=92.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+++++++||++ .++| +++|+++..|+++++.................+
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~-------- 68 (123)
T cd04627 2 PFIPVPSTASLFQAIEILGSGGIHRVAVTE--EESG---EVIGILSQRRLVEFLWENARSFPGLDPLYPIPL-------- 68 (123)
T ss_pred CceecCCCCCHHHHHHHHhhCCcceEEEEe--CCCC---cEEEEEEHHHHHHHHHHhHHhccchhhhhhhhh--------
Confidence 578899999999999999999999999995 3324 799999999999876543211000000000000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 424 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~ 424 (512)
.+..+|..++.++.+++++.+|++.|.+++.+++||+|++++++|+||.+|+.
T Consensus 69 --~~~~~~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~vGiit~~di~ 121 (123)
T cd04627 69 --RDLTIGTSDVISINGDQPLIDALHLMHNEGISSVAVVDNQGNLIGNISVTDVR 121 (123)
T ss_pred --hhcccCcCCceEeCCCCCHHHHHHHHHHcCCceEEEECCCCcEEEEEeHHHhh
Confidence 11223667889999999999999999999999999999889999999999985
No 72
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.36 E-value=8.8e-12 Score=130.06 Aligned_cols=118 Identities=16% Similarity=0.283 Sum_probs=101.3
Q ss_pred ccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhc
Q 010368 372 KIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 448 (512)
Q Consensus 372 ~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~ 448 (512)
.++++|.+ ++++++.++++.++++.+.+++++++||++++ ++++|+++.+|++....+. ...+.+++
T Consensus 192 ~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~~~d~ivGiv~~kDll~~~~~~--------~~~l~~~~-- 261 (408)
T TIGR03520 192 DTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKETIDNITGVLYIKDLLPHLNKK--------NFDWQSLL-- 261 (408)
T ss_pred EeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcCCCCceEEEEEHHHHHhHhccC--------CCCHHHHc--
Confidence 34555875 78999999999999999999999999999764 6899999999998654321 13456655
Q ss_pred CCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 449 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 449 ~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
+++.+|++++++.++++.|.+++.+..+|+|+ .|.++|+||..||++.++|
T Consensus 262 ------------~~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE-~G~~~GiVT~eDileeivg 312 (408)
T TIGR03520 262 ------------REPYFVPENKKLDDLLRDFQEKKNHLAIVVDE-YGGTSGLVTLEDIIEEIVG 312 (408)
T ss_pred ------------CCCeEeCCCCcHHHHHHHHHhcCceEEEEEcC-CCCEEEEEEHHHHHHHHhC
Confidence 46889999999999999999999999999995 8999999999999999876
No 73
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.36 E-value=6.5e-12 Score=137.31 Aligned_cols=122 Identities=19% Similarity=0.237 Sum_probs=104.2
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCC
Q 010368 372 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 451 (512)
Q Consensus 372 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 451 (512)
+++++|.+++.++++++++.++++.|.+++.+.+||+|++++++|+++.+|+.+....... ..+.++.+++
T Consensus 448 ~V~dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD~~g~lvGiVt~~dL~~~l~~~~~----~~~~~v~dim----- 518 (574)
T PRK01862 448 QMRELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVDDDGRFRGAVALKDITSDLLDKRD----TTDKTAADYA----- 518 (574)
T ss_pred cHHHHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEcCCCeEEEEEEHHHHHHHhhcccc----cccchHHHhc-----
Confidence 4667798889999999999999999999999999999999999999999999875432211 1124667766
Q ss_pred CCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCC--CeEEEEEehHHHHHHhh
Q 010368 452 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGS--KRVEGIVSLSDIFKFLL 511 (512)
Q Consensus 452 ~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~--~~liGiIS~~DIl~~ll 511 (512)
.+++.++++++++.+|+++|.+++.+++||||+ + ++++|+||++|+++++.
T Consensus 519 --------~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~-~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 519 --------HTPFPLLTPDMPLGDALEHFMAFQGERLPVVES-EASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred --------cCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeC-CCCCeEEEEEEHHHHHHHHH
Confidence 667889999999999999999999999999995 4 58999999999999874
No 74
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.35 E-value=8.1e-12 Score=105.49 Aligned_cols=103 Identities=17% Similarity=0.316 Sum_probs=88.4
Q ss_pred ecCCCCHHHHHHHHHhcC-----CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 384 LRPSASLSAALNLLVQAQ-----VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 384 v~~~~~l~~a~~~m~~~~-----~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
+.+++++.++++.|.+++ +..+||+|++|+++|+++.++++.. . .+.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd~~~~~~G~v~~~~l~~~---~-------~~~~v~~~~------------ 59 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVDEEGRLLGVVSLRDLLLA---D-------PDTPVSDIM------------ 59 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEECCCCCEEEEEEHHHHhcC---C-------CcchHHHHh------------
Confidence 568889999999998776 4789999988999999999998752 1 124677766
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
..++.++.+++++.++++.|..++.+.+||+|+ +++++|+||..||++++
T Consensus 60 -~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~-~~~~~Gvit~~dll~~~ 109 (109)
T cd04606 60 -DTDVISVSADDDQEEVARLFEKYDLLALPVVDE-EGRLVGIITVDDVIDVI 109 (109)
T ss_pred -CCCCeEEcCCCCHHHHHHHHHHcCCceeeeECC-CCcEEEEEEhHHhhhhC
Confidence 557899999999999999999999999999995 89999999999999864
No 75
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.35 E-value=1.7e-11 Score=105.63 Aligned_cols=115 Identities=14% Similarity=0.233 Sum_probs=92.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc-----CcccccHHHHHhcCCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI-----NLSEMTIHQALQLGQDSY 453 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~-~~l-----~~~~~~v~~~l~~~~~~~ 453 (512)
++.++.++.++.++++.|.+.+++.+||+|+ |+++|+++..++.+....... ... .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------- 73 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVED-NELVGVISDRDYLKAISPFLGTAGETEKDLATLNRRAHQIM------- 73 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEeC-CeEEEEEEHHHHHHHHHHHhccccchHHHHHHHHhHHHHhh-------
Confidence 4678999999999999999999999999996 999999999999875432100 000 00112455544
Q ss_pred CCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 454 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 454 ~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+++...+||+|+ +++++|++|+.|+++|
T Consensus 74 ------~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~-~~~~~Gvit~~dll~~ 122 (122)
T cd04637 74 ------TRDPITVSPDTPVDEASKLLLENSISCLPVVDE-NGQLIGIITWKDLLKY 122 (122)
T ss_pred ------cCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECC-CCCEEEEEEHHHhhhC
Confidence 567899999999999999999999999999995 7999999999999875
No 76
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.34 E-value=2.3e-11 Score=102.41 Aligned_cols=109 Identities=19% Similarity=0.363 Sum_probs=90.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.+++++.++++.|.+.+++.+||+|+ ++++|+++..|+.+....... ....++.+++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~G~v~~~dl~~~~~~~~~----~~~~~~~~~~------------- 63 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVDD-GRVVGSIDESDLLDALIEGKA----KFSLPVREVM------------- 63 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEeeC-CeeEEEEeHHHHHHHHhcccc----ccCcCHHHHh-------------
Confidence 4567899999999999999999999999997 999999999999986543311 0124677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.+++++|.+ . ..+|||++ +|+++|+||++||++|
T Consensus 64 ~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~-~~~~~Gvvt~~di~~~ 110 (110)
T cd04609 64 GEPLPTVDPDAPIEELSELLDR-G-NVAVVVDE-GGKFVGIITRADLLKY 110 (110)
T ss_pred cCCCceeCCCCcHHHHHHHHHh-C-CceeEEec-CCeEEEEEeHHHhhcC
Confidence 5568889999999999999988 3 34788985 8999999999999875
No 77
>cd04619 CBS_pair_6 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.34 E-value=2.3e-11 Score=103.74 Aligned_cols=111 Identities=20% Similarity=0.295 Sum_probs=91.2
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccc
Q 010368 291 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 370 (512)
Q Consensus 291 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~ 370 (512)
+.++.+++++.+|++.|.+++...+||+| .+ | +++|+++..++++.+..... .....++.++
T Consensus 3 ~~~v~~~~~l~~a~~~~~~~~~~~~~Vvd--~~-g---~~~G~vt~~dl~~~~~~~~~------~~~~~~v~~~------ 64 (114)
T cd04619 3 LAKIDVNATLQRAAKILGEPGIDLVVVCD--PH-G---KLAGVLTKTDVVRQMGRCGG------PGCTAPVENV------ 64 (114)
T ss_pred eEEECCCCcHHHHHHHHHhcCCCEEEEEC--CC-C---CEEEEEehHHHHHHHhhcCC------CcccCCHHHH------
Confidence 57789999999999999999999999994 33 4 79999999999876543100 0112233333
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 371 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 371 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.+|++.|.+++...+||+|++|+++|+|+++|++.
T Consensus 65 ------~~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~~~Gvi~~~dl~~ 113 (114)
T cd04619 65 ------MTRAVVSCRPGDLLHDVWQVMKQRGLKNIPVVDENARPLGVLNARDALK 113 (114)
T ss_pred ------hcCCCeeECCCCCHHHHHHHHHHcCCCeEEEECCCCcEEEEEEhHhhcc
Confidence 7778899999999999999999999999999998899999999999864
No 78
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.33 E-value=3.9e-11 Score=101.56 Aligned_cols=110 Identities=19% Similarity=0.383 Sum_probs=91.7
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++.++.++.++++.|.+.+.+.+||+|+ ++++|+++..|++........ .....++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~G~v~~~dl~~~~~~~~~---~~~~~~~~~~~------------- 64 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVDN-EKPVGIITERDLVKKVVSRNL---KPREVPVGEVM------------- 64 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEEC-CEEEEEEEHHHHHHHHhhccC---CcccCCHHHhc-------------
Confidence 4677899999999999999989999999986 499999999999875432211 11234677766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.+++++|.+++.+.+||+|+ + +++|+||..|+++
T Consensus 65 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~-~~~Gvi~~~di~~ 111 (112)
T cd04802 65 STPLITIDPNASLNEAAKLMAKHGIKRLPVVDD-D-ELVGIVTTTDIVM 111 (112)
T ss_pred CCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeC-C-EEEEEEEhhhhhc
Confidence 567889999999999999999999999999995 4 9999999999975
No 79
>cd04603 CBS_pair_KefB_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the KefB (Kef-type K+ transport systems) domain which is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=2.2e-11 Score=103.40 Aligned_cols=109 Identities=14% Similarity=0.229 Sum_probs=89.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++.+.+||++ . +| +++|+++..|+++.... . ....++
T Consensus 2 ~~~~v~~~~~l~~a~~~~~~~~~~~~~V~d--~-~~---~~~G~v~~~dl~~~~~~---~------~~~~~v-------- 58 (111)
T cd04603 2 QTVSVNCENPLREAIKMINELGARAVVVVD--E-EN---KVLGQVTLSDLLEIGPN---D------YETLKV-------- 58 (111)
T ss_pred ceEEeCCCCcHHHHHHHHHHcCCCEEEEEc--C-CC---CEEEEEEHHHHHhhccc---c------ccccCh--------
Confidence 367889999999999999999999999994 3 34 79999999999763110 0 011223
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.++|..++.++.+++++.+|+++|.+++.+.+||+|++|+++|+||.+|+++
T Consensus 59 ----~~~~~~~~~~v~~~~~l~~al~~m~~~~~~~lpVvd~~~~~~Giit~~di~~ 110 (111)
T cd04603 59 ----CEVYIVPVPIVYCDSKVTDLLRIFRETEPPVVAVVDKEGKLVGTIYERELLR 110 (111)
T ss_pred ----hheeecCCcEECCCCcHHHHHHHHHHcCCCeEEEEcCCCeEEEEEEhHHhhc
Confidence 3347778889999999999999999999999999998899999999999875
No 80
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.33 E-value=2.5e-11 Score=101.38 Aligned_cols=103 Identities=17% Similarity=0.339 Sum_probs=89.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++..+.+++++.++++.|.+++.+.+||+| +++++|+++..|+.+... ..++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d-~~~~~Giv~~~~l~~~~~----------~~~~~~~~------------- 57 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE-DGKLVGIITSRDVRRAHP----------NRLVADAM------------- 57 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE-CCEEEEEEehHHhhcccc----------cCCHHHHc-------------
Confidence 456789999999999999988999999998 689999999999976321 23567766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+++...+||+| +|+++|+||..||+.
T Consensus 58 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~--~~~~~G~it~~~l~~ 104 (105)
T cd04599 58 TREVVTISPEASLLEAKRLMEEKKIERLPVLR--ERKLVGIITKGTIAL 104 (105)
T ss_pred cCCCEEECCCCCHHHHHHHHHHcCCCEeeEEE--CCEEEEEEEHHHhcc
Confidence 56788999999999999999999999999999 399999999999973
No 81
>PRK14869 putative manganese-dependent inorganic pyrophosphatase; Provisional
Probab=99.32 E-value=1e-11 Score=135.03 Aligned_cols=284 Identities=14% Similarity=0.167 Sum_probs=175.5
Q ss_pred CcccccCCCCCcEEEEeCCCCHHHHHHHHHHcCCcEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCCCCCChhhHhh--h
Q 010368 187 HTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET--H 264 (512)
Q Consensus 187 ~~~yd~~p~s~kvv~ld~~~~v~~A~~~l~e~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~~~~~~l~~--~ 264 (512)
.++.|++- .++++++++.++.+|++.|.+++++.+||.|.+ ++++|++|..|+.+.+..-.. .+.+.. .
T Consensus 68 ~~V~dim~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~l~Givt~~di~~~~~~~~~------~~~~~~~~~ 138 (546)
T PRK14869 68 PQVRDLEI--DKPVTVSPDTSLKEAWNLMDENNVKTLPVVDEE-GKLLGLVSLSDLARAYMDILD------PEILSKSPT 138 (546)
T ss_pred CcHHHhcC--CCCcEECCCCcHHHHHHHHHHcCCCEEEEEcCC-CEEEEEEEHHHHHHHHHhhcc------hhhhhhcCC
Confidence 46667663 478999999999999999999999999999964 789999999999986643221 001111 1
Q ss_pred hHHHHHHhhhh--hcccc-------CC----------CCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCC
Q 010368 265 TISAWKEGKAY--LNRQI-------DS----------HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDG 325 (512)
Q Consensus 265 ~i~~~~~~~~~--~~~~~-------~~----------~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g 325 (512)
++..+.+.... +.... .. ........++.+..... ....+.+.+++.++|.....-..
T Consensus 139 t~~~i~~~L~~~~l~~~~~~~~~~~~~~v~a~~~~~~~~~~~~~~lvi~gdr~d---~~~~ai~~~~~~lIlt~g~~~~~ 215 (546)
T PRK14869 139 SLENIIRTLDGEVLVGAEEDKVEEGKVVVAAMAPESLLERIEEGDIVIVGDRED---IQLAAIEAGVRLLIITGGAPVSE 215 (546)
T ss_pred CHHHHHHhcCcEEEecCcccccccccEEEEEcCHHHHHHhccCCCEEEEcCcHH---HHHHHHHcCCCEEEECCCCCCCH
Confidence 11211111100 00000 00 00111223555543333 34467888999999985321000
Q ss_pred ------CcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCCC-CCceeecCCCCHHHHHHHHH
Q 010368 326 ------SFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR-RPLAMLRPSASLSAALNLLV 398 (512)
Q Consensus 326 ------~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~-~~~~~v~~~~~l~~a~~~m~ 398 (512)
....+..+.|..|.......-. ...++ +++|. +++.++.+++++.++.+.|.
T Consensus 216 ~v~~la~~~~i~ii~t~~dt~~t~~~l~---------~~~~V------------~~iM~~~~~~~~~~~~~~~~~~~~m~ 274 (546)
T PRK14869 216 DVLELAKENGVTVISTPYDTFTTARLIN---------QSIPV------------SYIMTTEDLVTFSKDDYLEDVKEVML 274 (546)
T ss_pred HHHHHHHhCCCeEEEecccHHHHHHHhh---------cCCCH------------HHhccCCCcEEECCCCcHHHHHHHHH
Confidence 0014778888888776554321 12334 44498 88999999999999999999
Q ss_pred hcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-----cccC----cccccHHHHHhcCCCCCCCccccCCcceEE---
Q 010368 399 QAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-----AHIN----LSEMTIHQALQLGQDSYSPYELRSQRCQMC--- 466 (512)
Q Consensus 399 ~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~-----~~l~----~~~~~v~~~l~~~~~~~~~~~~~~~~~~tv--- 466 (512)
+++++.+||+|++|+++|+++++|++........ ...+ +....+.+++.... ..+++...++.+
T Consensus 275 ~~~~~~~PVvd~~g~lvGiit~~dl~~~~~~~~iLVD~~e~~q~~~~~~~~~i~~iiDHH~----~~~~~~~~pi~~~~~ 350 (546)
T PRK14869 275 KSRYRSYPVVDEDGKVVGVISRYHLLSPVRKKVILVDHNEKSQAVEGIEEAEILEIIDHHR----LGDIQTSNPIFFRNE 350 (546)
T ss_pred hcCCCceEEEcCCCCEEEEEEHHHhhccccCceEEEcCccccccccchhhceEEEEecCCc----cCCCCCCCCcEEEee
Confidence 9999999999999999999999999975432110 0000 00000001111111 112344444433
Q ss_pred cCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 467 LPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 467 ~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
....+..-+.+.|.+.++...|++. +..+.||+|-++.|++
T Consensus 351 ~~gst~tiv~~~~~~~~i~~~~~ia--~~ll~gIlsDT~~f~~ 391 (546)
T PRK14869 351 PVGSTSTIVARMYRENGIEPSPEIA--GLLLAAILSDTLLFKS 391 (546)
T ss_pred eeeeHHHHHHHHHHHcCCCCCHHHH--HHHHHHHHHHhcCccC
Confidence 3366677888999999998888876 4568888888777653
No 82
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.32 E-value=2.2e-11 Score=102.13 Aligned_cols=105 Identities=15% Similarity=0.389 Sum_probs=90.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++..+.++.++++.|.+.+.+.+||+|+ ++++|+++..|++... ...++.+++
T Consensus 3 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d~-~~~~g~v~~~~l~~~~----------~~~~~~~~~------------- 58 (107)
T cd04610 3 DVITVSPDNTVKDVIKLIKETGHDGFPVVDN-GKVVGIVSARDLLGKD----------PDETVEEIM------------- 58 (107)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhccC----------ccccHHHhC-------------
Confidence 5678899999999999998888889999986 9999999999997521 123577766
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+++.+++||+++ +|+++|+|+..||+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~g~~~Gvi~~~di~~~ 107 (107)
T cd04610 59 SKDLVVAVPEMDIMDAARVMFRTGISKLPVVDE-NNNLVGIITNTDVIRS 107 (107)
T ss_pred CCCCeEECCCCCHHHHHHHHHHhCCCeEeEECC-CCeEEEEEEHHHhhcC
Confidence 556888999999999999999999999999995 8999999999999863
No 83
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.32 E-value=4.1e-11 Score=102.87 Aligned_cols=114 Identities=19% Similarity=0.388 Sum_probs=93.8
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccc-----cCcccccHHHHHhcCCCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAH-----INLSEMTIHQALQLGQDSYS 454 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~-----l~~~~~~v~~~l~~~~~~~~ 454 (512)
++.++.+++++.+|++.|.+.+.+++||+|++++++|+++..++........... ......++.+++
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d~~~~~~G~v~~~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~~-------- 73 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVDEEGRLVGIVTDRDLRDASPSPFTTLSEHELYLLLKMPVKEIM-------- 73 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEECCCCcEEEEEEHHHHHHHhhhhcccchhhhhhhhcCcCHHHHh--------
Confidence 4678899999999999999899999999998899999999999987543211000 012235677766
Q ss_pred CccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 455 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 455 ~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++..++++.++++.|.+.+...+||++ +++++|+||..||++
T Consensus 74 -----~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~--~~~~~Gvv~~~di~~ 120 (121)
T cd04584 74 -----TKDVITVHPLDTVEEAALLMREHRIGCLPVVE--DGRLVGIITETDLLR 120 (121)
T ss_pred -----hCCCeEECCCCcHHHHHHHHHHcCCCeEEEee--CCEEEEEEEHHHhhc
Confidence 55788999999999999999999999999999 389999999999986
No 84
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.31 E-value=6.5e-11 Score=99.18 Aligned_cols=112 Identities=25% Similarity=0.474 Sum_probs=93.9
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++..+.++.++++.|.+.+.+.+||++++++++|+++.+|+........... ...+.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~G~v~~~~l~~~~~~~~~~~----~~~~~~~~------------- 64 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVDDDGRLVGIVTERDLLRALAEGGLDP----LVTVGDVM------------- 64 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEECCCCCEEEEEeHHHHHHHHHhccCCc----cccHHHHh-------------
Confidence 4567899999999999999988999999998899999999999998665432211 11245555
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+.+.+.+||+|+ +++++|+|+..|++++
T Consensus 65 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~-~~~~~G~i~~~dl~~~ 113 (113)
T cd02205 65 TRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDD-EGRLVGIVTRSDILRA 113 (113)
T ss_pred cCCceecCCCcCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEHHHhhcC
Confidence 567888999999999999999999999999996 7999999999999863
No 85
>cd04617 CBS_pair_4 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.31 E-value=2.8e-11 Score=103.81 Aligned_cols=111 Identities=23% Similarity=0.368 Sum_probs=89.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.++++..+||++ .+ | +++|+++..++++....... ....++.++
T Consensus 2 ~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~~-~---~~~Givt~~dl~~~~~~~~~-------~~~~~~~~~----- 63 (118)
T cd04617 2 PPVVVRENTSVYDAIVTLFLEDVGSLFVVD--ED-G---DLVGVVSRKDLLKASIGGAD-------LQKVPVGVI----- 63 (118)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CC-C---CEEEEEEHHHHHHHHHcCCC-------ccCCCHHHH-----
Confidence 578899999999999999999999999994 33 3 79999999999886642110 001122222
Q ss_pred ccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~liGivs~~Di~~ 425 (512)
|.. ++.++.+++++.+++++|.+++++.+||+|++ |+++|+||++|+++
T Consensus 64 -------~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~lpVvd~~~~~~~l~Gvit~~~l~~ 117 (118)
T cd04617 64 -------MTRMPNITTTTPEESVLEAAKKLIEHQVDSLPVVEKVDEGLEVIGRITKTNITK 117 (118)
T ss_pred -------hCCCCCcEEECCCCcHHHHHHHHHHcCCCEeeEEeCCCccceEEEEEEhhheec
Confidence 553 67899999999999999999999999999876 69999999999865
No 86
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.31 E-value=2.6e-11 Score=129.41 Aligned_cols=220 Identities=19% Similarity=0.292 Sum_probs=147.2
Q ss_pred eeeecCCCCeEEEeeeHHHHHHHHHHhhcCC---CCCChhhHhhhhHHHHHHhhhhhccccCCCCCcCCCCceEeCCCCC
Q 010368 223 APLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDN 299 (512)
Q Consensus 223 ~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~s 299 (512)
+|+..+. .+.+|..++...+...+..+ .+++.++.... + +.++. .+..|..+++++.++++
T Consensus 42 ~Piv~a~----m~~vT~~ela~ava~~GglG~i~~~~~~e~~~~~-I---~~vk~--------~~dim~~~~v~i~~~~t 105 (486)
T PRK05567 42 IPLLSAA----MDTVTEARMAIAMAREGGIGVIHKNMSIEEQAEE-V---RKVKR--------SESGVVTDPVTVTPDTT 105 (486)
T ss_pred cCEEeCC----CCCcCHHHHHHHHHhCCCCCEecCCCCHHHHHHH-H---HHhhh--------hhhcccCCCeEeCCCCC
Confidence 6887643 24568888877775444221 12222222111 1 11111 12356789999999999
Q ss_pred HHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCCC-
Q 010368 300 LKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNR- 378 (512)
Q Consensus 300 l~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~- 378 (512)
+.+|+++|.+++++++||++ . .+ +++|+++.+|+.... ....++.++ |.
T Consensus 106 v~ea~~~m~~~~~~~lpVvd--~-~g---~lvGiVt~~DL~~~~------------~~~~~V~di------------m~~ 155 (486)
T PRK05567 106 LAEALALMARYGISGVPVVD--E-NG---KLVGIITNRDVRFET------------DLSQPVSEV------------MTK 155 (486)
T ss_pred HHHHHHHHHHhCCCEEEEEc--c-CC---EEEEEEEHHHhhhcc------------cCCCcHHHH------------cCC
Confidence 99999999999999999994 3 34 899999999995311 012233333 76
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 379 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 379 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++++++.+++++.++++.|.+++++.+||+|++|+++|+||.+||++.........-......+..
T Consensus 156 ~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe~g~lvGiIT~~DLl~~~~~p~a~~d~~g~l~V~a-------------- 221 (486)
T PRK05567 156 ERLVTVPEGTTLEEALELLHEHRIEKLPVVDDNGRLKGLITVKDIEKAEEFPNACKDEQGRLRVGA-------------- 221 (486)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEhHHhhhhhhCCCcccccCCCEEEEe--------------
Confidence 688999999999999999999999999999999999999999999986432100000000111222
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
.+.+.+ + -.+.++.|.+.+++.+ |+|..+++..++++..+.++.
T Consensus 222 ----ai~~~~-~-~~e~a~~L~~agvdvi-vvD~a~g~~~~vl~~i~~i~~ 265 (486)
T PRK05567 222 ----AVGVGA-D-NEERAEALVEAGVDVL-VVDTAHGHSEGVLDRVREIKA 265 (486)
T ss_pred ----ecccCc-c-hHHHHHHHHHhCCCEE-EEECCCCcchhHHHHHHHHHh
Confidence 222222 2 2778889999999854 677546888888877766654
No 87
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.30 E-value=3.8e-11 Score=100.61 Aligned_cols=100 Identities=17% Similarity=0.267 Sum_probs=87.1
Q ss_pred eeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccccCC
Q 010368 382 AMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQ 461 (512)
Q Consensus 382 ~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~ 461 (512)
+++.++.++.++++.|.+.+.+.+||+|+ ++++|+++..|+..... .++.+++ ..
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d~-~~~~G~v~~~~l~~~~~-----------~~~~~~~-------------~~ 58 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVDY-NKFLGAVYLKDIENATY-----------GDVVDYI-------------VR 58 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEEC-CEEEEEEEHHHHhhhcc-----------cchhhhh-------------hc
Confidence 46899999999999999999999999997 99999999999975311 2455554 45
Q ss_pred cceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 462 RCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 462 ~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
.+.++.+++++.++++.|.+++...+||+| +|+++|+||..||++
T Consensus 59 ~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~--~~~~iGvit~~dl~~ 103 (104)
T cd04594 59 GIPYVRLTSTAEEAWEVMMKNKTRWCPVVD--DGKFKGIVTLDSILD 103 (104)
T ss_pred CCcEEcCCCCHHHHHHHHHHcCcceEEEEE--CCEEEEEEEHHHhhc
Confidence 688999999999999999999999999998 589999999999975
No 88
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.30 E-value=3.4e-11 Score=128.10 Aligned_cols=113 Identities=14% Similarity=0.156 Sum_probs=98.4
Q ss_pred CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCC
Q 010368 377 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 453 (512)
Q Consensus 377 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 453 (512)
|.++++++.+++++.+|+++|.+++++.+||+|+ +++++|+|+.+|+.... ..+.++.++|..
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~GklvGIVT~~DL~~v~---------~~~~~V~eIMt~----- 171 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGSKLLGYVTKRDWDFVN---------DRETKLSEVMTS----- 171 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCCeEEEEEEHHHHhhcc---------ccCCcHHHHhcc-----
Confidence 5578899999999999999999999999999987 48999999999996532 124688998822
Q ss_pred CCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 454 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 454 ~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
..++.++.+++++.+|+++|.+++...+||||+ +++++|+||++||++++
T Consensus 172 ------~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~-~g~LvGvITr~DIlk~~ 221 (505)
T PLN02274 172 ------DDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNE-DGELVDLVTRTDVKRVK 221 (505)
T ss_pred ------CCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHh
Confidence 123889999999999999999999999999996 89999999999999876
No 89
>cd04600 CBS_pair_HPP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the HPP motif domain. These proteins are integral membrane proteins with four transmembrane spanning helices. The function of these proteins is uncertain, but they are thought to be transporters. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.30 E-value=4.6e-11 Score=103.10 Aligned_cols=122 Identities=19% Similarity=0.356 Sum_probs=95.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.+++++.++++.|.+++++++||++ .+ | +++|+++..++++++...... .....+. ...
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~-~---~~~Giv~~~~l~~~~~~~~~~--~~~~~~~-------~~~ 66 (124)
T cd04600 2 RDVVTVTPDTSLEEAWALLRRHRIKALPVVD--GD-R---RLVGIVTQRDLLRHARPDGRR--PLRGRLR-------GRD 66 (124)
T ss_pred CCcEEeCCCCCHHHHHHHHHHcCCceeeEEC--CC-C---CEEEEEEHHHHHhhhcccccc--hhhhhhh-------ccc
Confidence 5788999999999999999999999999994 23 4 899999999998766432110 0000000 001
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
....++++|.+++.++.+++++.+++++|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 67 ~~~~i~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvit~~di~~ 123 (124)
T cd04600 67 KPETVGDIMSPPVVTVRPDTPIAELVPLLADGGHHHVPVVDEDRRLVGIVTQTDLIA 123 (124)
T ss_pred ccccHHHhccCCCeeeCCCCcHHHHHHHHHhcCCCceeEEcCCCCEEEEEEhHHhhc
Confidence 111345557888999999999999999999999999999998999999999999874
No 90
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.29 E-value=1.7e-11 Score=130.09 Aligned_cols=109 Identities=17% Similarity=0.179 Sum_probs=94.5
Q ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcc
Q 010368 381 LAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 457 (512)
Q Consensus 381 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 457 (512)
+.++.+++++.+|+++|.+++++.+||+|+ +++++|+||..|+.... ...+.++.++|..
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~gkLvGIVT~~DLr~~~--------~~~~~~V~dIMt~--------- 169 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHGKLLGIVTSRDYRISR--------MSLDTKVKDFMTP--------- 169 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCCEEEEEEEcHHhhccc--------cCCCCCHHHHhCC---------
Confidence 368999999999999999999999999986 58999999999996421 1234689998822
Q ss_pred ccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 458 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 458 ~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..+++++.+++++.+|+++|.++++++|||||+ +++++|+||+.||++.
T Consensus 170 --~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~-~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 170 --FEKLVTANEGTTLKEANDIIWDHKLNTLPIVDK-NGNLVYLVFRKDYDSH 218 (502)
T ss_pred --CCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEhHHHHhc
Confidence 237889999999999999999999999999996 8999999999999875
No 91
>cd04630 CBS_pair_17 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.29 E-value=6.3e-11 Score=100.87 Aligned_cols=112 Identities=17% Similarity=0.288 Sum_probs=91.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+++.+.+||++ .+.+ +++|+++.+|+++.+...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 65 (114)
T cd04630 2 NVVTIDGLATVAEALQLMKEHGVSSLVVEK--RRES---DAYGIVTMRDILKKVVAEGRD------PDRVNVYEI----- 65 (114)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCEEEEEE--CCCC---cEEEEEehHHHHHHHHhCCCC------CCccCHHHH-----
Confidence 578899999999999999999999999995 2324 799999999998866432110 011233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.++++.|.+.+...+||+|+ |+++|+|++.|+++
T Consensus 66 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~Gvi~~~dl~~ 113 (114)
T cd04630 66 -------MTKPLISVSPDMDIKYCARLMERTNIRRAPVVEN-NELIGIISLTDIFL 113 (114)
T ss_pred -------hcCCCeeECCCCCHHHHHHHHHHcCCCEeeEeeC-CEEEEEEEHHHhhc
Confidence 7778899999999999999999999999999987 99999999999874
No 92
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.29 E-value=3.2e-11 Score=127.45 Aligned_cols=113 Identities=18% Similarity=0.348 Sum_probs=99.3
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCC
Q 010368 375 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 451 (512)
Q Consensus 375 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 451 (512)
+.|.+++.++.+++++.+++++|.+++++++||+|++ ++++|+|+.+|++.... ...++.++|
T Consensus 84 ~~~~~~~vtl~~~~tv~eal~~m~~~~~s~lpVvd~~~~~~~lvGIVt~rDL~~~~~---------~~~~V~dvm----- 149 (450)
T TIGR01302 84 NGIISDPVTISPETTVADVLELMERKGISGIPVVEDGDMTGKLVGIITKRDIRFVKD---------KGKPVSEVM----- 149 (450)
T ss_pred CceecCceEeCCCCCHHHHHHHHHHcCCCEEEEEeCCCCCCeEEEEEEHHHHhhhhc---------CCCCHHHhh-----
Confidence 3366788999999999999999999999999999987 79999999999975321 135788877
Q ss_pred CCCCccccC-CcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 452 SYSPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 452 ~~~~~~~~~-~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
. .++.++.+++++.++++.|.+++.+.+||||+ +|+++|+||+.||++.+
T Consensus 150 --------~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe-~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 150 --------TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDK-NGELVGLITMKDIVKRR 200 (450)
T ss_pred --------CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEhHHhhhcc
Confidence 4 37899999999999999999999999999996 99999999999999864
No 93
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.28 E-value=1.1e-10 Score=99.49 Aligned_cols=111 Identities=25% Similarity=0.457 Sum_probs=95.0
Q ss_pred CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCc
Q 010368 377 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 456 (512)
Q Consensus 377 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 456 (512)
|...+.++.++.++.+|...|.++++..+||++. ++++|++|.+|+........... .++.++|
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~-~~l~Giit~~di~~~~~~~~~~~-----~~v~~v~---------- 68 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD-GKLVGIITERDILRALAAGGKRL-----LPVKEVM---------- 68 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC-CEEEEEEEHHHHHHHHhccCCcc-----ccHHHhc----------
Confidence 4467899999999999999999999999999973 47999999999998776543211 1467766
Q ss_pred cccCCcceEEcCCCCHHHHHHHHhc-CCCcEEEEEeCCCC-eEEEEEehHHHH
Q 010368 457 ELRSQRCQMCLPSDTLHKVMERLAN-PGVRRLVIVEAGSK-RVEGIVSLSDIF 507 (512)
Q Consensus 457 ~~~~~~~~tv~~~~tL~~a~~~m~~-~~~~~l~VVd~~~~-~liGiIS~~DIl 507 (512)
..++.++.+++++.++++.|.+ ++++++||+++ ++ +++|++|.+|++
T Consensus 69 ---~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~-~~~~lvGivt~~di~ 117 (117)
T COG0517 69 ---TKPVVTVDPDTPLEEALELMVERHKIRRLPVVDD-DGGKLVGIITLSDIL 117 (117)
T ss_pred ---cCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEEC-CCCeEEEEEEHHHcC
Confidence 5589999999999999999999 79999999996 75 999999999974
No 94
>PRK07807 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.27 E-value=2.3e-10 Score=120.85 Aligned_cols=159 Identities=14% Similarity=0.176 Sum_probs=117.8
Q ss_pred CcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccc
Q 010368 285 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 364 (512)
Q Consensus 285 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 364 (512)
..|.++++++.+++++.+|+++|.+++++.+||+| +++ +++|+++.+|+... . ...++.+
T Consensus 93 ~iMi~~pvtv~~d~tv~eA~~~m~~~~~s~l~VVD---~~g---klvGIVT~rDL~~~------~-------~~~~V~d- 152 (479)
T PRK07807 93 DLVFDTPVTLSPDDTVGDALALLPKRAHGAVVVVD---EEG---RPVGVVTEADCAGV------D-------RFTQVRD- 152 (479)
T ss_pred cccccCCeEECCCCCHHHHHHHHHhcCCceEEEEC---CCC---eEEEEEeHHHHhcC------c-------cCCCHHH-
Confidence 35789999999999999999999999999999994 334 89999999998421 0 0123444
Q ss_pred cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHH
Q 010368 365 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQ 444 (512)
Q Consensus 365 ~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~ 444 (512)
+|..+++++.+++++.+|+++|.++++..+||+|++++++|+||++||++....... .+.-....+..
T Consensus 153 -----------iMt~~~itV~~d~sL~eAl~lM~~~~i~~LPVVD~~g~lvGIIT~~DIl~~~~~~~~-~~~~g~l~V~a 220 (479)
T PRK07807 153 -----------VMSTDLVTLPAGTDPREAFDLLEAARVKLAPVVDADGRLVGVLTRTGALRATIYTPA-VDAAGRLRVAA 220 (479)
T ss_pred -----------hccCCceEECCCCcHHHHHHHHHhcCCCEEEEEcCCCeEEEEEEHHHHHHHhhCCch-hhhhhccchHh
Confidence 488899999999999999999999999999999988999999999999986544311 00000112222
Q ss_pred HHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCe
Q 010368 445 ALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKR 496 (512)
Q Consensus 445 ~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~ 496 (512)
+ ..+ .....+.++.|.+.+++. .++|..+|.
T Consensus 221 a------------------v~~--~~~~~~~a~~Lv~aGvd~-i~~D~a~~~ 251 (479)
T PRK07807 221 A------------------VGI--NGDVAAKARALLEAGVDV-LVVDTAHGH 251 (479)
T ss_pred h------------------hcc--ChhHHHHHHHHHHhCCCE-EEEeccCCc
Confidence 1 112 234667788888888876 466753443
No 95
>cd04605 CBS_pair_MET2_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the MET2 domain. Met2 is a key enzyme in the biosynthesis of methionine. It encodes a homoserine transacetylase involved in converting homoserine to O-acetyl homoserine. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=1e-10 Score=98.59 Aligned_cols=108 Identities=22% Similarity=0.437 Sum_probs=91.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.+++++.+|++.|.+++...+||++ .+ | +++|+++..++++.+.... .++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~-~---~~~G~v~~~~l~~~~~~~~-----------~~~~~~---- 60 (110)
T cd04605 2 RPVVTISEDASIKEAAKLMIEENINHLPVVD--ED-G---RLVGIVTSWDISKAVARDK-----------KSVEDI---- 60 (110)
T ss_pred CCCEEECCCCCHHHHHHHHHhCCCceEEEEC--CC-C---cEEEEEeHHHHHHHHhhCc-----------cCHHHh----
Confidence 5678999999999999999999999999994 33 4 8999999999987554210 113333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++..+.+++++.+|++.|.+.+...+||++++|+++|++++.|+.+
T Consensus 61 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~v~~~di~~ 109 (110)
T cd04605 61 --------MTRNVITATPDEPIDVAARKMERHNISALPVVDAENRVIGIITSEDISK 109 (110)
T ss_pred --------cCCCCeEECCCCcHHHHHHHHHHhCCCEEeEECCCCcEEEEEEHHHhhh
Confidence 6677889999999999999999999999999998999999999999864
No 96
>PRK05567 inosine 5'-monophosphate dehydrogenase; Reviewed
Probab=99.27 E-value=4.6e-11 Score=127.53 Aligned_cols=114 Identities=22% Similarity=0.380 Sum_probs=100.7
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCC
Q 010368 374 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 453 (512)
Q Consensus 374 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 453 (512)
++.|..+++++.++.++.+++++|.+++++++||+|++++++|+|+.+|+..... ...++.++|
T Consensus 90 ~dim~~~~v~i~~~~tv~ea~~~m~~~~~~~lpVvd~~g~lvGiVt~~DL~~~~~---------~~~~V~dim------- 153 (486)
T PRK05567 90 ESGVVTDPVTVTPDTTLAEALALMARYGISGVPVVDENGKLVGIITNRDVRFETD---------LSQPVSEVM------- 153 (486)
T ss_pred hhcccCCCeEeCCCCCHHHHHHHHHHhCCCEEEEEccCCEEEEEEEHHHhhhccc---------CCCcHHHHc-------
Confidence 4457788999999999999999999999999999999999999999999964311 124678877
Q ss_pred CCccccC-CcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 454 SPYELRS-QRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 454 ~~~~~~~-~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
. .+++++.+++++.++++.|.+++++.+||+|+ +|+++|+||..||++.+
T Consensus 154 ------~~~~~v~v~~~~sl~eal~~m~~~~~~~lpVVDe-~g~lvGiIT~~DLl~~~ 204 (486)
T PRK05567 154 ------TKERLVTVPEGTTLEEALELLHEHRIEKLPVVDD-NGRLKGLITVKDIEKAE 204 (486)
T ss_pred ------CCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcC-CCcEEEEEEhHHhhhhh
Confidence 4 57899999999999999999999999999996 99999999999999865
No 97
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.27 E-value=3.9e-11 Score=126.57 Aligned_cols=111 Identities=14% Similarity=0.179 Sum_probs=97.2
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCC
Q 010368 375 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYS 454 (512)
Q Consensus 375 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~ 454 (512)
++|.++++++.+++++.+++++|.+++++.+||+| +++++|+||.+|+.... ...++.++|
T Consensus 92 eim~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD-~gklvGIVT~rDL~~~~----------~~~~V~dIM-------- 152 (475)
T TIGR01303 92 DLVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL-EDRPVGLVTDSDLLGVD----------RFTQVRDIM-------- 152 (475)
T ss_pred hccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE-CCEEEEEEEHHHhhcCC----------CCCCHHHHc--------
Confidence 44777889999999999999999999999999988 47999999999984321 124688877
Q ss_pred CccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 455 PYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 455 ~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
..+++++.+++++.+|+++|.+++++.+||||+ +++++|+||.+||+++.
T Consensus 153 -----t~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~-~g~LvGIIT~~DLl~~~ 202 (475)
T TIGR01303 153 -----STDLVTAPADTEPRKAFDLLEHAPRDVAPLVDA-DGTLAGILTRTGALRAT 202 (475)
T ss_pred -----cCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcC-CCeEEEEEEHHHHHHHH
Confidence 668999999999999999999999999999996 89999999999999864
No 98
>cd04607 CBS_pair_NTP_transferase_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain associated with the NTP (Nucleotidyl transferase) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.27 E-value=1e-10 Score=99.29 Aligned_cols=109 Identities=19% Similarity=0.351 Sum_probs=89.9
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccc
Q 010368 291 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 370 (512)
Q Consensus 291 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~ 370 (512)
.+++.+++++.+|++.|.+++.+.++|++ .+ | +++|+++.+|+++.+..... ...++.++
T Consensus 4 ~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~-~---~~~G~v~~~dl~~~~~~~~~--------~~~~v~~~------ 63 (113)
T cd04607 4 QLLVSPDASILDALRKIDKNALRIVLVVD--EN-G---RLLGTVTDGDIRRALLKGLS--------LDDPVSEV------ 63 (113)
T ss_pred ceEECCCCCHHHHHHHHHhcCcCEEEEEC--CC-C---CEEEEEEcHHHHHHHhcCCC--------cCCCHHHh------
Confidence 56789999999999999999999999994 33 4 79999999999876543210 11223333
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 371 PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 371 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.++++.|.+++.+.+||+|++|+++|+||.+|++.
T Consensus 64 ------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 112 (113)
T cd04607 64 ------MNRNPITAKVGSSREEILALMRERSIRHLPILDEEGRVVGLATLDDLLS 112 (113)
T ss_pred ------hcCCCEEEcCCCCHHHHHHHHHHCCCCEEEEECCCCCEEEEEEhHHhcc
Confidence 7777889999999999999999999999999998899999999999863
No 99
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.27 E-value=6.9e-11 Score=99.47 Aligned_cols=100 Identities=23% Similarity=0.385 Sum_probs=87.7
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 456 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 456 (512)
....+.+++++.++.+.+.+.+...+||+|+ +|+++|+++.+|+...... +|
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~~~~G~v~~~dl~~~~~~---------------~m---------- 57 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVDSTEESPRLVGYILRSQLVVALKN---------------YI---------- 57 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEcCCCCCCEEEEEEeHHHHHHHHHH---------------hc----------
Confidence 3567899999999999999988889999998 6999999999999765422 33
Q ss_pred cccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 457 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 457 ~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..++.++.+++++.++++.|.+++.+.+||++ +|+++|+||+.||+++
T Consensus 58 ---~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~--~~~~~Gvvt~~dl~~~ 105 (105)
T cd04591 58 ---DPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD--EGRLVGIITRKDLLKA 105 (105)
T ss_pred ---cCCCceECCCCcHHHHHHHHHHcCCCEEEEEE--CCeEEEEEEhhhhhcC
Confidence 45688999999999999999999999999996 7899999999999874
No 100
>cd04624 CBS_pair_11 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.2e-10 Score=98.51 Aligned_cols=110 Identities=18% Similarity=0.378 Sum_probs=91.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++..+.+++++.+|++.|.+++.+.+||++ .+ | +++|+++..++++.+..... ...++.+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~~-~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~~------ 61 (112)
T cd04624 2 PVVTVDPDTSIREAAKLMAEENVGSVVVVD--PD-E---RPIGIVTERDIVRAVAAGID--------LDTPVSE------ 61 (112)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCCEEEEEC--CC-C---CEEEEeeHHHHHHHHhccCC--------CccCHHH------
Confidence 567899999999999999999999999994 33 4 79999999999887654211 1122333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+|..++.++.+++++.++++.|.+++...+||++++|+++|+++.+|+++
T Consensus 62 ------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~g~~~Gilt~~dl~~ 111 (112)
T cd04624 62 ------IMTRDLVTVDPDEPVAEAAKLMRKNNIRHHLVVDKGGELVGVISIRDLVR 111 (112)
T ss_pred ------hccCCCEEECCCCcHHHHHHHHHHcCccEEEEEcCCCcEEEEEEHHHhcc
Confidence 37778899999999999999999999999999998899999999999864
No 101
>cd04623 CBS_pair_10 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.26 E-value=1.3e-10 Score=98.25 Aligned_cols=111 Identities=20% Similarity=0.381 Sum_probs=90.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++++.+||++ .+ + +++|+++..++++++...... ....++.
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~V~~--~~-~---~~~Giv~~~~l~~~~~~~~~~------~~~~~~~------- 62 (113)
T cd04623 2 DVITVRPDATVAEAAKLMAEKNIGAVVVVD--DG-G---RLVGIFSERDIVRKVALRGAS------ALDTPVS------- 62 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEC--CC-C---CEEEEEehHHHHHHHhhcCCC------ccccCHH-------
Confidence 577889999999999999999999999994 33 3 799999999999876542110 0012233
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
++|.+++.++.++.++.++++.|.+.+.+.+||+++ |+++|+|+.+|+++
T Consensus 63 -----~~~~~~~~~v~~~~~~~~~l~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 112 (113)
T cd04623 63 -----EIMTRNVITVTPDDTVDEAMALMTERRFRHLPVVDG-GKLVGIVSIGDVVK 112 (113)
T ss_pred -----HhcCCCcEEECCCCcHHHHHHHHHHcCCCEeEEEeC-CEEEEEEEHHHhhc
Confidence 337778899999999999999999999999999986 99999999999864
No 102
>TIGR00400 mgtE Mg2+ transporter (mgtE). This family of prokaryotic proteins models a class of Mg++ transporter first described in Bacillus firmus. May form a homodimer.
Probab=99.26 E-value=3.8e-11 Score=127.07 Aligned_cols=116 Identities=13% Similarity=0.224 Sum_probs=100.1
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHH
Q 010368 372 KIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQAL 446 (512)
Q Consensus 372 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l 446 (512)
+++++|..++.++.++.++.+|++.|.+ .....++|+|++++++|+++.+|++... .+.+++++|
T Consensus 132 tvg~iMt~~~~~v~~~~tv~eal~~l~~~~~~~~~~~~v~Vvd~~~~l~GvV~l~dLl~a~----------~~~~v~~im 201 (449)
T TIGR00400 132 SAGRIMTIEYVELKEDYTVGKALDYIRRVAKTKEDIYTLYVTNESKHLKGVLSIRDLILAK----------PEEILSSIM 201 (449)
T ss_pred hHHHhCcCceEEECCCCcHHHHHHHHHhcCCCccceeEEEEECCCCeEEEEEEHHHHhcCC----------CCCcHHHHh
Confidence 4556699999999999999999999975 4567899999999999999999987521 124788877
Q ss_pred hcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010368 447 QLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 511 (512)
Q Consensus 447 ~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll 511 (512)
.+++.++.+++++.+|++.|.+++...+||||+ +|+++|+||..|+++.+.
T Consensus 202 -------------~~~~~~v~~~~~~~eal~~m~~~~~~~lpVVD~-~g~lvGiIt~~Dil~~l~ 252 (449)
T TIGR00400 202 -------------RSSVFSIVGVNDQEEVARLIQKYDFLAVPVVDN-EGRLVGIVTVDDIIDVIQ 252 (449)
T ss_pred -------------CCCCeeECCCCCHHHHHHHHHHcCCCEEeEEcC-CCeEEEEEEHHHHHHHHH
Confidence 567889999999999999999999999999996 899999999999998764
No 103
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=99.25 E-value=4.5e-11 Score=118.17 Aligned_cols=112 Identities=17% Similarity=0.300 Sum_probs=96.9
Q ss_pred ccCCCCCCC-ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCC
Q 010368 372 KIGEPNRRP-LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQ 450 (512)
Q Consensus 372 ~v~~~m~~~-~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~ 450 (512)
+++++|.++ +.++.+++++.++++.|.+.+.+.+||+|++|+++|+++..|+.+....+. ..+.++.++|
T Consensus 156 ~v~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd~~g~~~Givt~~dl~~~~~~~~-----~~~~~v~~im---- 226 (268)
T TIGR00393 156 KVKDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCDENNQLVGVFTDGDLRRALLGGG-----SLKSEVRDFM---- 226 (268)
T ss_pred hHHHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEeCCCCEEEEEEcHHHHHHHhcCC-----cccCcHHHhC----
Confidence 566778888 899999999999999999999999999998999999999999987654321 1235788876
Q ss_pred CCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEe
Q 010368 451 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVS 502 (512)
Q Consensus 451 ~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS 502 (512)
.+++.++.+++++.+|++.|.+++..++||+|+ +|+++|+|+
T Consensus 227 ---------~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~l~GvI~ 268 (268)
T TIGR00393 227 ---------TLGPKTFKLDALLLEALEFLERRKITSLVVVDD-HNKVLGVLH 268 (268)
T ss_pred ---------CCCCeEECCCCcHHHHHHHHHHcCCcEEEEECC-CCeEEEEEC
Confidence 567889999999999999999999999999995 889999985
No 104
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.25 E-value=1e-10 Score=100.15 Aligned_cols=113 Identities=15% Similarity=0.261 Sum_probs=90.2
Q ss_pred CceeecCCCCHHHHHHHHHhcC-CCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQ-VSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~-~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
++.++.+++++.++++.|...+ .+.+||+|+ |+++|+++..|+............ ..+.++.++|
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~~l~~~~~~~~~~~~-~~~~~v~~~~------------ 67 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVDD-GRPVGLIMREALMELLSTPYGRAL-YGKKPVSEVM------------ 67 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEEC-CeeEEEEEHHHHHHHHhchhhHHH-HcCCcHHHhc------------
Confidence 4567899999999999998776 889999998 999999999999875442100000 1234677766
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCc---EEEEEeCCCCeEEEEEehHHHHH
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVR---RLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~---~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++.+++++.++++.|.+++.+ .++||++ +|+++|+||..|+++
T Consensus 68 -~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~-~~~~~Gvvs~~di~~ 118 (119)
T cd04598 68 -DPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTE-EGRYLGIGTVKDLLR 118 (119)
T ss_pred -CCCcEEecCCCCHHHHHHHHHcCCcccccccEEEee-CCeEEEEEEHHHHhc
Confidence 56789999999999999999999864 3468885 899999999999985
No 105
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.5e-10 Score=97.03 Aligned_cols=104 Identities=21% Similarity=0.411 Sum_probs=89.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcccc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELR 459 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~ 459 (512)
++.++..+.++.++++.|.+.+.+.+||++++++++|+++..++..... +.++.+++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~v~~~~l~~~~~----------~~~~~~~~------------- 58 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVKKSGELVGIITRKDLLRNPE----------EEQLALLM------------- 58 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEHHHHHhccc----------cchHHHHh-------------
Confidence 4567889999999999999888999999998899999999999975211 12455555
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
..++.++..++++.++++.|.+++.+.+||+| +|+++|+||..|+++
T Consensus 59 ~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd--~~~~~G~it~~d~~~ 105 (106)
T cd04638 59 TRDPPTVSPDDDVKEAAKLMVENNIRRVPVVD--DGKLVGIVTVADIVR 105 (106)
T ss_pred cCCCceECCCCCHHHHHHHHHHcCCCEEEEEE--CCEEEEEEEHHHhhc
Confidence 55788899999999999999999999999999 479999999999975
No 106
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.25 E-value=1.4e-10 Score=103.27 Aligned_cols=113 Identities=24% Similarity=0.395 Sum_probs=91.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc-ccc------Cc---------------
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY-AHI------NL--------------- 437 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~-~~l------~~--------------- 437 (512)
+++++.+++++.++++.|.+.+++.+||+|+ ++++|+++..|+++.+..... ..+ ..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd~-~~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 80 (143)
T cd04634 2 NPITCNADDTISDAARLLRENKISGAPVLDG-GKLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREFINWEETK 80 (143)
T ss_pred CcEEecCCCCHHHHHHHHHHcCCCcceEeEC-CeEEEEecHHHHHHHHHhccCccccccCCcceeeeccchheeehHHHH
Confidence 4678999999999999999999999999997 999999999999876543211 000 00
Q ss_pred ------ccccHHHHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 438 ------SEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 438 ------~~~~v~~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
...++.++ |..++.++..++++.+++..|.+.+.+++||++. ++++|+||..|+++
T Consensus 81 ~~~~~~~~~~v~~~-------------~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~--~~~~Gvvt~~dl~~ 142 (143)
T cd04634 81 RALTDAGKMKVRDI-------------MTKKVITISPDASIEDAAELMVRHKIKRLPVVED--GRLVGIVTRGDIIE 142 (143)
T ss_pred HHHHHHhcCCHHHH-------------cCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC--CEEEEEEEHHHhhc
Confidence 11233333 3667899999999999999999999999999993 89999999999974
No 107
>cd04639 CBS_pair_26 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.24 E-value=1.1e-10 Score=98.56 Aligned_cols=109 Identities=23% Similarity=0.442 Sum_probs=91.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+.+...+||++ . +| +++|+++..++++++.... ...++.++
T Consensus 2 ~~~~v~~~~~i~e~~~~~~~~~~~~~~V~~--~-~~---~~~G~v~~~~l~~~~~~~~---------~~~~v~~~----- 61 (111)
T cd04639 2 HFETLSPADTLDDAADALLATTQHEFPVVD--G-DG---HLVGLLTRDDLIRALAEGG---------PDAPVRGV----- 61 (111)
T ss_pred CceEcCCCCcHHHHHHHHHHcCCCcceEEC--C-CC---cEEEEeeHHHHHHHHHhcC---------CCCcHHHH-----
Confidence 577899999999999999989999999994 2 34 7999999999988765321 01223333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++..+.+++++.++++.|.+++...+||++++|+++|+++.+|+..
T Consensus 62 -------~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~dl~~ 110 (111)
T cd04639 62 -------MRRDFPTVSPSATLDAVLRLMQQGGAPAVPVVDGSGRLVGLVTLENVGE 110 (111)
T ss_pred -------hcCCCcEECCCCcHHHHHHHHHhcCCceeeEEcCCCCEEEEEEHHHhhc
Confidence 6778899999999999999999999999999998899999999999864
No 108
>cd04642 CBS_pair_29 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.23 E-value=1.5e-10 Score=100.50 Aligned_cols=124 Identities=17% Similarity=0.255 Sum_probs=91.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
.++++.+++++.+|++.|.+++++.+||++ +. | +++|+++..|+++......... .........+.. .
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~i~V~d--~~-~---~~~Giv~~~dl~~~~~~~~~~~----~~~~~~~~~~~~--~ 69 (126)
T cd04642 2 KVVSIDSDERVLDAFKLMRKNNISGLPVVD--EK-G---KLIGNISASDLKGLLLSPDDLL----LYRTITFKELSE--K 69 (126)
T ss_pred CeEEECCCccHHHHHHHHHHhCCCcccEEC--CC-C---cEEEEEEHHHhhhhhcCcchhh----cccchhhhhhhh--h
Confidence 467899999999999999999999999994 33 4 7999999999988664321100 000000000000 0
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.....+.|..++.++.+++++.+|+++|.+++.+.+||+|++++++|+||.+|+++
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vvd~~~~~~Giit~~dil~ 125 (126)
T cd04642 70 FTDSDGVKSRPLITCTPSSTLKEVITKLVANKVHRVWVVDEEGKPIGVITLTDIIS 125 (126)
T ss_pred cccccccccCCCeEECCCCcHHHHHHHHHHhCCcEEEEECCCCCEEEEEEHHHHhc
Confidence 00112336678899999999999999999999999999998899999999999875
No 109
>TIGR01303 IMP_DH_rel_1 IMP dehydrogenase family protein. This model represents a family of proteins, often annotated as a putative IMP dehydrogenase, related to IMP dehydrogenase and GMP reductase and restricted to the high GC Gram-positive bacteria. All species in which a member is found so far (Corynebacterium glutamicum, Mycobacterium tuberculosis, Streptomyces coelicolor, etc.) also have IMP dehydrogenase as described by TIGRFAMs entry TIGR01302.
Probab=99.23 E-value=4.3e-10 Score=118.70 Aligned_cols=112 Identities=17% Similarity=0.185 Sum_probs=95.2
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCcccccc
Q 010368 286 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 365 (512)
Q Consensus 286 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 365 (512)
.|.++++++.+++++.+|+++|.+++++.+||++ + + +++|++|.+|+... . ...++.++
T Consensus 93 im~~~pvtv~p~~tI~eA~~lm~~~~~~~~vVvD---~-g---klvGIVT~rDL~~~------~-------~~~~V~dI- 151 (475)
T TIGR01303 93 LVLDTPITLAPHDTVSDAMALIHKRAHGAAVVIL---E-D---RPVGLVTDSDLLGV------D-------RFTQVRDI- 151 (475)
T ss_pred ccccCCeEECCCCCHHHHHHHHHhcCCeEEEEEE---C-C---EEEEEEEHHHhhcC------C-------CCCCHHHH-
Confidence 5678899999999999999999999999999984 2 3 79999999998310 0 01234444
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 010368 366 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 429 (512)
Q Consensus 366 ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~ 429 (512)
|..+++++.+++++.+|+++|.+++++.+||+|++|+++|+||++||++....
T Consensus 152 -----------Mt~~litv~~~~sL~eAl~lM~~~~i~~LPVVD~~g~LvGIIT~~DLl~~~~~ 204 (475)
T TIGR01303 152 -----------MSTDLVTAPADTEPRKAFDLLEHAPRDVAPLVDADGTLAGILTRTGALRATIY 204 (475)
T ss_pred -----------ccCCceEeCCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhC
Confidence 88899999999999999999999999999999999999999999999986543
No 110
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=99.23 E-value=7.9e-11 Score=122.47 Aligned_cols=162 Identities=15% Similarity=0.235 Sum_probs=129.2
Q ss_pred EeeeHHHHHHHHHHhhcCCCCCChhhHhhhhHHHHHHhhhhhccccCCCCCcCCCCceEeCCCCCHHHHHHHHHhC----
Q 010368 235 GVLSASDFILILRELGNHGSNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHN---- 310 (512)
Q Consensus 235 Gilt~~Dii~il~~~~~~~~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~---- 310 (512)
.=++..|.+.++.++. .+...+.|..+.-.....++..++|+++.+|+.|..+++++.++.|+.+|+..+++.
T Consensus 89 e~m~~Dd~~~ll~elp---~~~~~~lL~~l~~~~r~~v~~~l~y~e~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~ 165 (451)
T COG2239 89 EELDIDDAADLLDELP---DEVRDELLSLLDPEERARVRQLLSYPEDTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDA 165 (451)
T ss_pred HhcCcHHHHHHHHhCC---HHHHHHHHHhCCHHHHHHHHHhcCCChhhhhccceeeeEEeccCcCHHHHHHHHHHhcccc
Confidence 3345556666665443 233345555556566667777899999999999999999999999999999999853
Q ss_pred -CCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCCCCCceeecCCCC
Q 010368 311 -EVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSAS 389 (512)
Q Consensus 311 -~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~~ 389 (512)
.+..+.|+| .++ +++|+++.++++. .....+++++ |.+.++.+.+++.
T Consensus 166 e~~~~lyVvD--~~~----~L~Gvvsl~~Ll~-------------a~~~~~i~~i------------m~~~~~~V~~~~d 214 (451)
T COG2239 166 ETIYYLYVVD--EKG----KLLGVVSLRDLLT-------------AEPDELLKDL------------MEDDVVSVLADDD 214 (451)
T ss_pred cccceEEEEC--Ccc----ceEEEeeHHHHhc-------------CCcHhHHHHH------------hcccceeecccCC
Confidence 478899994 344 8999999999972 1113344555 8888999999999
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 010368 390 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 430 (512)
Q Consensus 390 l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~ 430 (512)
..++.+.+.+++.-++||||++++++|+||..|++..+.+.
T Consensus 215 qeevA~~~~~ydl~a~PVVd~~~~LiG~itiDDiidvi~eE 255 (451)
T COG2239 215 QEEVARLFEKYDLLAVPVVDEDNRLIGIITIDDIIDVIEEE 255 (451)
T ss_pred HHHHHHHHHHhCCeecceECCCCceeeeeeHHHHHHHHHHH
Confidence 99999999999999999999999999999999999877654
No 111
>cd04614 CBS_pair_1 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.23 E-value=1.9e-10 Score=95.17 Aligned_cols=94 Identities=16% Similarity=0.283 Sum_probs=82.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++++.+||+| ++ | +++|+++.+|+++..
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~-~---~~~Giv~~~dl~~~~-------------------------- 49 (96)
T cd04614 2 NVPTVWEETPLPVAVRIMELANVKALPVLD--DD-G---KLSGIITERDLIAKS-------------------------- 49 (96)
T ss_pred CccEeCCCCcHHHHHHHHHHcCCCeEEEEC--CC-C---CEEEEEEHHHHhcCC--------------------------
Confidence 578899999999999999999999999994 33 4 799999999997411
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.+.++.+++++.+|+++|.+++.+.+||+|++|+++|+++++|+++
T Consensus 50 ----------~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~~~~~~~Giit~~di~~ 95 (96)
T cd04614 50 ----------EVVTATKRTTVSECAQKMKRNRIEQIPIINGNDKLIGLLRDHDLLK 95 (96)
T ss_pred ----------CcEEecCCCCHHHHHHHHHHhCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 1467899999999999999999999999998899999999999874
No 112
>cd04593 CBS_pair_EriC_assoc_bac_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in bacteria and archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS d
Probab=99.23 E-value=2.1e-10 Score=97.71 Aligned_cols=111 Identities=17% Similarity=0.340 Sum_probs=90.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++..+.+++++.+|++.|.+.+++.+||++ .+ | +++|+++..|+++.+...... ...++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~~-~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~------- 61 (115)
T cd04593 2 PPPVLSATTPLREAAEQLIESKHGSALVVD--RD-G---GVVGIITLPDLLRALEADEAG-------EPSAVD------- 61 (115)
T ss_pred CCcEeCCCCCHHHHHHHHHhCCCcEEEEEc--CC-C---CEEEEEEHHHHHHHHhccccc-------ccccHH-------
Confidence 467889999999999999999999999994 33 3 799999999998766432100 011122
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~liGivs~~Di~~ 425 (512)
++|..++.++.+++++.+++++|.+++...+||+|++ |+++|+|+.+|++.
T Consensus 62 -----~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~Vvd~~~~~~~~Gvit~~di~~ 114 (115)
T cd04593 62 -----EVATPPLLTVHPDEPLAHALDRMASRGLRQLPVVDRGNPGQVLGLLTRENVLL 114 (115)
T ss_pred -----HhccCCceEECCCCCHHHHHHHHHHcCCceeeEEeCCCCCeEEEEEEhHHhhc
Confidence 3367788999999999999999999999999999887 79999999999875
No 113
>cd04803 CBS_pair_15 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.8e-10 Score=99.05 Aligned_cols=120 Identities=20% Similarity=0.418 Sum_probs=93.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+.+++.+||++ .+ | +++|+++..++++++......... ... ......
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~~-~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~-~~~~~~----- 67 (122)
T cd04803 2 PVVTLSEDDSLADAEELMREHRIRHLPVVN--ED-G---KLVGLLTQRDLLRAALSSLSDNGE--ESL-TKERDV----- 67 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCcccccEEC--CC-C---CEEEEEEHHHHHHHhccccccccc--ccc-ccccCc-----
Confidence 578899999999999999999999999994 23 4 799999999999876543211000 000 000111
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.+.++|..++..+.+++++.+++++|.+.+.+.+||++++|+++|+++..|++.
T Consensus 68 --~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dl~~ 121 (122)
T cd04803 68 --PVAEVMKTDVLTVTPDTPLREAAEIMVENKIGCLPVVDDKGTLVGIITRSDFLR 121 (122)
T ss_pred --CHHHhhCCCCeEeCCCCcHHHHHHHHHHcCCCeEEEEcCCCCEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999998899999999999875
No 114
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.22 E-value=9.2e-11 Score=124.78 Aligned_cols=113 Identities=22% Similarity=0.223 Sum_probs=97.4
Q ss_pred CCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC---CcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCC
Q 010368 377 NRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN---DSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSY 453 (512)
Q Consensus 377 m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~---g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~ 453 (512)
|..+++++.+++++.+|+++|.+++++.+||+|++ ++++|+|+.+|+.... . .+.++.++|..
T Consensus 102 ~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~gkLvGIVt~~DL~~~~-~--------~~~~V~diMt~----- 167 (495)
T PTZ00314 102 FIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGGKLLGIVTSRDIDFVK-D--------KSTPVSEVMTP----- 167 (495)
T ss_pred cccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCCeEEEEEEHHHHhhcc-c--------CCCCHHHhhCC-----
Confidence 55678899999999999999999999999999873 7999999999997421 1 13578888821
Q ss_pred CCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 454 SPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 454 ~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
..++.++.+++++.+|+++|.+++++.+||||+ +++++|+||++||++..
T Consensus 168 ------~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~-~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 168 ------REKLVVGNTPISLEEANEVLRESRKGKLPIVND-NGELVALVSRSDLKKNR 217 (495)
T ss_pred ------cCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcC-CCcEEEEEEehHhhhcc
Confidence 127899999999999999999999999999996 89999999999999763
No 115
>cd04643 CBS_pair_30 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.7e-10 Score=98.24 Aligned_cols=114 Identities=18% Similarity=0.318 Sum_probs=89.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++++.+||+| . +| +++|+++..++++++........ ......+
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~-~~---~~~Giv~~~dl~~~~~~~~~~~~--~~~~~~~--------- 64 (116)
T cd04643 2 EVAYVQDTNTLRHALLVLTKHGYSAIPVLD--K-EG---KYVGTISLTDILWKLKGLENLDL--ERLVDLK--------- 64 (116)
T ss_pred CcEEECCCCcHHHHHHHHHHCCCceeeeEC--C-CC---cEEEEEeHHHHHHHhhccCchhH--HHHhCCc---------
Confidence 578899999999999999999999999994 3 34 79999999999987754221100 0000122
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
++++|..++.++.+++++.+|++.|.+.+ .+||+|++|+++|++|.+|+++
T Consensus 65 ---v~~~~~~~~~~v~~~~~l~~a~~~~~~~~--~~~Vv~~~~~~~Gvit~~dil~ 115 (116)
T cd04643 65 ---VIDVMNTDVPVIIDDADIEEILHLLIDQP--FLPVVDDDGIFIGIITRREILK 115 (116)
T ss_pred ---HHHHhcCCCceecCCCCHHHHHHHHhcCC--ceeEEeCCCeEEEEEEHHHhhc
Confidence 33447778899999999999999998754 5999998899999999999875
No 116
>cd04631 CBS_pair_18 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.22 E-value=1.6e-10 Score=99.87 Aligned_cols=124 Identities=19% Similarity=0.320 Sum_probs=93.6
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.+++++.+|+++|.+.+.+.+||++ .++| +++|+++..++++++......... ......+ .
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~i~V~d--~~~~---~~~G~v~~~dl~~~~~~~~~~~~~----~~~~~~~----~ 67 (125)
T cd04631 1 KDVVTVPPTTPIMEAAKIMVRNGFRRLPVVD--EGTG---KLVGIITATDILKYLGGGEKFNKI----KTGNGLE----A 67 (125)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCcccceeEe--CCCC---EEEEEEEHHHHHHHhhccchhccc----cccccch----h
Confidence 3578889999999999999999999999995 3324 899999999999877542111000 0000000 0
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
....+.++|..++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 68 ~~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~~~~~~Gvit~~di~~ 124 (125)
T cd04631 68 INEPVRSIMTRNVITITPDDSIKDAAELMLEKRVGGLPVVDDDGKLVGIVTERDLLK 124 (125)
T ss_pred hhcCHHHHhcCCceEeCCCCcHHHHHHHHHHcCCceEEEEcCCCcEEEEEEHHHhhc
Confidence 011233447778999999999999999999999999999998899999999999875
No 117
>cd04608 CBS_pair_PALP_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a poten
Probab=99.22 E-value=6.3e-11 Score=102.95 Aligned_cols=113 Identities=12% Similarity=0.179 Sum_probs=91.1
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.+++++.+|++.|.+++++.+||++ .+ + +++|+++..++++.+..... ....++.++
T Consensus 2 ~~~~~v~~~~~v~~a~~~m~~~~~~~~~Vvd--~~-~---~~~Gii~~~dl~~~~~~~~~-------~~~~~v~~i---- 64 (124)
T cd04608 2 KAPVTVLPTVTCAEAIEILKEKGFDQLPVVD--ES-G---KILGMVTLGNLLSSLSSGKV-------QPSDPVSKA---- 64 (124)
T ss_pred CCCEEECCCCCHHHHHHHHHHcCCCEEEEEc--CC-C---CEEEEEEHHHHHHHHHHhcc-------CCCCcHHHH----
Confidence 4678899999999999999999999999994 33 3 79999999999876654211 112344444
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHH---------hcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLV---------QAQVSSIPIVDDNDSLLDIYCRSDITAL 426 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~---------~~~~~~lpVvd~~g~liGivs~~Di~~~ 426 (512)
|..++.++.+++++.++.+++. +.+...+||++++|+++|+||++|++.+
T Consensus 65 --------m~~~~~~v~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~Givt~~Dl~~~ 123 (124)
T cd04608 65 --------LYKQFKRVNKNDTLGKLSRILETDAFLLVFFEQISSAAIGKEKQEKPIGIVTKIDLLSY 123 (124)
T ss_pred --------hhccceecCCCCCHHHHHhhcccCCceEEEeccccccccccccccceEEEEehhHhhhh
Confidence 8899999999999999999653 3367788899888999999999999864
No 118
>cd04582 CBS_pair_ABC_OpuCA_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyzi
Probab=99.22 E-value=2.3e-10 Score=95.79 Aligned_cols=104 Identities=14% Similarity=0.197 Sum_probs=87.3
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++.+.+||++ . +| +++|+++..|+++... .++.
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~~~v~d--~-~g---~~~Giv~~~dl~~~~~--------------~~~~------- 54 (106)
T cd04582 2 EPITVRPDDPLSDALGLMDDSDLRALTVVD--A-DG---QPLGFVTRREAARASG--------------GCCG------- 54 (106)
T ss_pred CCcEecCCCcHHHHHHHHHhcCCCEEEEEC--C-CC---CEEEEEeHHHHHHhcc--------------cchh-------
Confidence 567889999999999999999999999994 3 34 7999999999985311 1122
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
++|.+.+..+.+++++.++++.|.+++...+||+|++|+++|++++++++.
T Consensus 55 -----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~~l~~ 105 (106)
T cd04582 55 -----DHAEPFKVTVSVDDDLRIVLSRMFAHDMSWLPCVDEDGRYVGEVTQRSIAD 105 (106)
T ss_pred -----hhcccCCEEECCCCCHHHHHHHHHHCCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 236666788999999999999999999999999998899999999999864
No 119
>cd04611 CBS_pair_PAS_GGDEF_DUF1_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with a PAS domain, a GGDEF (DiGuanylate-Cyclase (DGC) domain, and a DUF1 domain downstream. PAS domains have been found to bind ligands, and to act as sensors for light and oxygen in signal transduction. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CB
Probab=99.21 E-value=2.9e-10 Score=95.79 Aligned_cols=109 Identities=21% Similarity=0.396 Sum_probs=90.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+++.+.+||++ . + +++|+++..+++++...... ...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~--~---~~~G~v~~~~l~~~~~~~~~--------~~~~v~------- 59 (111)
T cd04611 2 QILTCPPDTSLAEAASRMRERRISSIVVVD--D--G---RPLGIVTERDILRLLASGPD--------LQTPVG------- 59 (111)
T ss_pred CceEECCCCcHHHHHHHHHHcCCCEEEEee--C--C---EEEEEEeHHHHHHHHhcCCC--------CCcCHH-------
Confidence 567899999999999999999999999995 2 4 89999999999876643210 112233
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
++|..++..+.+++++.++++.|.+.+...+||+|++|+++|+|+.+|+++
T Consensus 60 -----~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~~Vv~~~~~~~Gvi~~~di~~ 110 (111)
T cd04611 60 -----EVMSSPLLTVPADTSLYDARQLMREHGIRHLVVVDDDGELLGLLSQTDLLQ 110 (111)
T ss_pred -----HhcCCCceEECCCCCHHHHHHHHHHcCCeEEEEECCCCcEEEEEEhHHhhc
Confidence 336778889999999999999999999999999998899999999999864
No 120
>cd04588 CBS_pair_CAP-ED_DUF294_assoc_arch This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the archaeal CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site.
Probab=99.20 E-value=3.5e-10 Score=95.33 Aligned_cols=109 Identities=23% Similarity=0.411 Sum_probs=90.5
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.+++++.+|++.|.+++++.+||++ . + +++|+++..++++....... ..++.+
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~--~---~~~G~v~~~~l~~~~~~~~~---------~~~v~~----- 59 (110)
T cd04588 1 KPLITLNPNATLREAARLFNTHHIHGAPVVD--D--G---KLVGIVTLSDIAHAIARGLE---------LAKVKD----- 59 (110)
T ss_pred CCcEEECCCCCHHHHHHHHHHcCCCEEEEee--C--C---EEEEEEEHHHHHHHHhcccc---------ccCHHH-----
Confidence 3578899999999999999999999999994 3 4 89999999999876542110 122333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+|..++..+.+++++.++++.|.+.+...+||++++|+++|+|+..|+++
T Consensus 60 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 109 (110)
T cd04588 60 -------VMTKDVITIDEDEQLYDAIRLMNKHNVGRLIVTDDEGRPVGIITRTDILR 109 (110)
T ss_pred -------HhcCCceEECCCCCHHHHHHHHHhcCCCEEEEECCCCCEEEEEEhHHhhc
Confidence 36678899999999999999999999999999998899999999999864
No 121
>cd04620 CBS_pair_7 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.20 E-value=2.9e-10 Score=96.73 Aligned_cols=110 Identities=22% Similarity=0.365 Sum_probs=87.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-CceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 290 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
+++++.+++++.+|++.|.+++ ...++|.+ + | +++|+++..|+++++..... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~-------~~~~~i~~~---- 63 (115)
T cd04620 2 HPLTVTPDTPVADAIALMSQQGDSSCVLVVE---K-G---RLLGIFTERDIVRLTAIGKD-------LSDLPIGEV---- 63 (115)
T ss_pred CCeEeCCCCcHHHHHHHHHhcCCCceEEEcC---C-C---cEEEEEeHHHHHHHHhcCCC-------ccccCHHHh----
Confidence 4677899999999999998888 56677773 2 4 79999999999876643210 011233333
Q ss_pred cccccCCCCCCCceeecCC--CCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPS--ASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~--~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.++ +++.+|+++|.+++...+||+|++|+++|+||++|+++
T Consensus 64 --------~~~~~~~v~~~~~~~l~~a~~~~~~~~~~~~pVvd~~~~~~Gvit~~dl~~ 114 (115)
T cd04620 64 --------MTQPVVTLQESEIQDIFTALSLFRQHQIRHLPVLDDQGQLIGLVTAESIRQ 114 (115)
T ss_pred --------cCCCcEEEecccccCHHHHHHHHHHhCCceEEEEcCCCCEEEEEEhHHhhc
Confidence 66778888877 78999999999999999999998899999999999875
No 122
>cd04583 CBS_pair_ABC_OpuCA_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the ABC transporter OpuCA. OpuCA is the ATP binding component of a bacterial solute transporter that serves a protective role to cells growing in a hyperosmolar environment but the function of the CBS domains in OpuCA remains unknown. In the related ABC transporter, OpuA, the tandem CBS domains have been shown to function as sensors for ionic strength, whereby they control the transport activity through an electronic switching mechanism. ABC transporters are a large family of proteins involved in the transport of a wide variety of different compounds, like sugars, ions, peptides, and more complex organic molecules. They are a subset of nucleotide hydrolases that contain a signature motif, Q-loop, and H-loop/switch region, in addition to the Walker A motif/P-loop and Walker B motif commonly found in a number of ATP- and GTP-binding and hydrolyz
Probab=99.20 E-value=3.6e-10 Score=94.90 Aligned_cols=107 Identities=21% Similarity=0.352 Sum_probs=89.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
.++..+.+++++.+|++.|.++++..+||++ . +| +++|+++..|+++.... ..++.+
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~-~~---~~~G~v~~~dl~~~~~~------------~~~v~~----- 58 (109)
T cd04583 2 KNPVTITPDRTLAEAIKLMRDKKVDSLLVVD--K-DN---KLLGIVSLESLEQAYKE------------AKSLED----- 58 (109)
T ss_pred CCCEEECCCCCHHHHHHHHHHCCCceEEEEc--C-CC---cEEEEEEHHHHHHHhhc------------CCcHhH-----
Confidence 3577889999999999999999999999994 2 34 79999999999865421 112222
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+|...+..+.+++++.++++.|.+.+..++||++++|+++|+++.+|+++
T Consensus 59 -------~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~vv~~~g~~~Gvit~~~l~~ 108 (109)
T cd04583 59 -------IMLEDVFTVQPDASLRDVLGLVLKRGPKYVPVVDEDGKLVGLITRSSLVD 108 (109)
T ss_pred -------hhcCCceEECCCCcHHHHHHHHHHcCCceeeEECCCCeEEEEEehHHhhc
Confidence 36677889999999999999999999999999998899999999999864
No 123
>PRK15094 magnesium/cobalt efflux protein CorC; Provisional
Probab=99.20 E-value=6.6e-10 Score=110.80 Aligned_cols=161 Identities=11% Similarity=0.094 Sum_probs=116.0
Q ss_pred ccCCCCCcCCC--CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCccc
Q 010368 279 QIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPI 356 (512)
Q Consensus 279 ~~~~~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~ 356 (512)
....++.+|.+ .++++.+++++.++++.+.+++.+++||++ .+.+ +++|+++.+|++..+.... .
T Consensus 65 ~~~~V~diMtpr~~i~~l~~~~sl~e~~~~i~~~~~sr~PV~~--~~~d---~iiGiv~~kDll~~~~~~~-------~- 131 (292)
T PRK15094 65 ADQRVRDIMIPRSQMITLKRNQTLDECLDVIIESAHSRFPVIS--EDKD---HIEGILMAKDLLPFMRSDA-------E- 131 (292)
T ss_pred CCCEEeEEccchHHEEEEeCCCCHHHHHHHHHhcCCcEEEEec--CCCC---cEEEEEEHHHHHhHhhccC-------C-
Confidence 34445667776 799999999999999999999999999995 2323 7999999999986542110 0
Q ss_pred ccCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccC
Q 010368 357 LKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN 436 (512)
Q Consensus 357 l~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~ 436 (512)
...+.++ |. ++.++++++++.++++.|.+++.+.+||+|+.|.++|+||..||+..+........+
T Consensus 132 -~~~l~~l------------~r-~~~~V~e~~~l~~~L~~m~~~~~~~a~VvDe~G~viGiVTleDIle~ivGei~de~d 197 (292)
T PRK15094 132 -AFSMDKV------------LR-QAVVVPESKRVDRMLKEFRSQRYHMAIVIDEFGGVSGLVTIEDILELIVGEIEDEYD 197 (292)
T ss_pred -cCCHHHH------------cC-CCcCcCCCCcHHHHHHHHHhcCCEEEEEEeCCCCEEEEeEHHHHHHHHhCCCccccc
Confidence 1112333 54 455899999999999999999999999999999999999999999977654332211
Q ss_pred cccccHHHHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHH
Q 010368 437 LSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 479 (512)
Q Consensus 437 ~~~~~v~~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m 479 (512)
.... .++.. .......+...++|.++.+.+
T Consensus 198 ~~~~--~~i~~-----------~~~~~~~v~G~~~l~dl~~~l 227 (292)
T PRK15094 198 EEDD--IDFRQ-----------LSRHTWTVRALASIEDFNEAF 227 (292)
T ss_pred cccc--cccEE-----------eCCCeEEEEeccCHHHHHHHh
Confidence 0000 01110 123456777888888777766
No 124
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=99.20 E-value=7.8e-11 Score=114.78 Aligned_cols=116 Identities=16% Similarity=0.287 Sum_probs=103.4
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcC
Q 010368 372 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 449 (512)
Q Consensus 372 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~ 449 (512)
.|+++|. .+..++.+++++.+..++..+.+.+++||+|+..+++|+++.+|+.... .+.++..+|
T Consensus 189 ~Vedi~~P~~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn~~~kvvGvVt~rDv~~~~----------~~t~ieKVM--- 255 (432)
T COG4109 189 TVEDIMTPLEDTSYLRETDTVEDWLDLVEKTGHSRFPVVNRSMKVVGVVTMRDVLDKK----------PSTTIEKVM--- 255 (432)
T ss_pred eHHHhccccccceeccccccHHHHHHHHHHcCCCccceecccceEEEEEEehhhhcCC----------CCccHHHHh---
Confidence 3455576 6778899999999999999999999999999999999999999997632 235778877
Q ss_pred CCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010368 450 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 511 (512)
Q Consensus 450 ~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll 511 (512)
++.++++.+.+++..+.++|.-.++.-+||+|+ +.+++|+||++|+++.+.
T Consensus 256 ----------tknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~-n~~llGiitR~dvlk~lq 306 (432)
T COG4109 256 ----------TKNPITVRAKTSVASVAQMMIWEGIEMLPVVDS-NNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred ----------ccCCeeecccchHHHHHHHHHhccceeeeEEcC-CceEEEEEEHHHHHHHHH
Confidence 788999999999999999999999999999996 999999999999999873
No 125
>cd04801 CBS_pair_M50_like This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the metalloprotease peptidase M50. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.20 E-value=2e-10 Score=97.69 Aligned_cols=110 Identities=15% Similarity=0.285 Sum_probs=87.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhCC-CceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 367 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig 367 (512)
+++.++.+++++.+|++.|.+++ .+.+||++ .+ | +++|+++..|+++...... ...++.++
T Consensus 1 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~V~d--~~-~---~~~G~v~~~dl~~~~~~~~---------~~~~v~~~--- 62 (114)
T cd04801 1 RDFPTVPAHLTLREFVREYVLGSNQRRFVVVD--NE-G---RYVGIISLADLRAIPTSQW---------AQTTVIQV--- 62 (114)
T ss_pred CCcceeCCCCCHHHHHHHHhccCCceeEEEEc--CC-C---cEEEEEEHHHHHHHHHhhc---------cccchhhh---
Confidence 35788999999999999997775 89999994 33 3 7999999999987654211 01223333
Q ss_pred ccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 368 TWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 368 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|.. ++.++.+++++.+|++.|.+++.+.+||+|++|+++|+++.+|+++
T Consensus 63 ---------~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~l~Vv~~~~~~~Gvl~~~di~~ 113 (114)
T cd04801 63 ---------MTPAAKLVTVLSEESLAEVLKLLEEQGLDELAVVEDSGQVIGLITEADLLR 113 (114)
T ss_pred ---------hcccccceEECCCCcHHHHHHHHHHCCCCeeEEEcCCCcEEEEEeccceec
Confidence 432 3568999999999999999999999999998899999999999864
No 126
>TIGR03520 GldE gliding motility-associated protein GldE. Members of this protein family are exclusive to the Bacteroidetes phylum (previously Cytophaga-Flavobacteria-Bacteroides). GldC is a protein linked to a type of rapid surface gliding motility found in certain Bacteroidetes, such as Flavobacterium johnsoniae and Cytophaga hutchinsonii. GldE was discovered because of its adjacency to GldD in F. johnsonii. Overexpression of GldE partially supresses the effects of a GldB point mutant suggesting that GldB and GldE interact. Gliding motility appears closely linked to chitin utilization in the model species Flavobacterium johnsoniae. Not all Bacteroidetes with members of this protein family appear to have all of the genes associated with gliding motility and in fact some do not appear to express the gliding phenotype.
Probab=99.20 E-value=8.2e-10 Score=115.35 Aligned_cols=161 Identities=9% Similarity=0.096 Sum_probs=118.8
Q ss_pred cccCCCCCcCCC--CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcc
Q 010368 278 RQIDSHGKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLP 355 (512)
Q Consensus 278 ~~~~~~g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~ 355 (512)
..+-.+..+|.+ ++++++.++++.++++.|.+++++++||++. ..+ +++|+++.+|++.++.. .
T Consensus 188 l~~~~v~diMtpr~~v~~l~~~~~~~e~~~~~~~~~~sR~PV~~~-~~d----~ivGiv~~kDll~~~~~---~------ 253 (408)
T TIGR03520 188 FGNTDTKQVMRPRLDIFALDIETSFSEIIPKIIENGYSRIPVYKE-TID----NITGVLYIKDLLPHLNK---K------ 253 (408)
T ss_pred cCCCEeeeeCCchHhEEEEECCCCHHHHHHHHHhCCCCEEEEEcC-CCC----ceEEEEEHHHHHhHhcc---C------
Confidence 344456667875 7999999999999999999999999999952 222 79999999999864421 0
Q ss_pred cccCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccccc
Q 010368 356 ILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHI 435 (512)
Q Consensus 356 ~l~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l 435 (512)
...+.++ |+ ++..+++++++.++++.|.+++.+..+|+|+.|..+|+||..||+..+....+...
T Consensus 254 --~~~l~~~------------~~-~~~~Vpe~~~l~~ll~~m~~~~~~~aiVvDE~G~~~GiVT~eDileeivgei~de~ 318 (408)
T TIGR03520 254 --NFDWQSL------------LR-EPYFVPENKKLDDLLRDFQEKKNHLAIVVDEYGGTSGLVTLEDIIEEIVGDISDEF 318 (408)
T ss_pred --CCCHHHH------------cC-CCeEeCCCCcHHHHHHHHHhcCceEEEEEcCCCCEEEEEEHHHHHHHHhCCCCCcC
Confidence 1112222 43 57899999999999999999999999999999999999999999987654433221
Q ss_pred CcccccHHHHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhc
Q 010368 436 NLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLAN 481 (512)
Q Consensus 436 ~~~~~~v~~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~ 481 (512)
+ .-.+.+.. .......++...++.++.+.|--
T Consensus 319 d----~~~~~i~~----------~~~~~~~v~G~~~l~~l~~~l~~ 350 (408)
T TIGR03520 319 D----DEDLIYSK----------IDDNNYVFEGKTSLKDFYKILKL 350 (408)
T ss_pred C----cCccceEE----------eCCCeEEEEeccCHHHHHHHhCC
Confidence 1 00111100 12446778888999998888844
No 127
>PRK11543 gutQ D-arabinose 5-phosphate isomerase; Provisional
Probab=99.20 E-value=1.3e-10 Score=117.98 Aligned_cols=117 Identities=15% Similarity=0.188 Sum_probs=97.2
Q ss_pred CCcCCCC--ceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCcc
Q 010368 284 GKAFPRP--LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 361 (512)
Q Consensus 284 g~~~~~~--~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v 361 (512)
+.+|.++ +.++++++++.+|++.|.+++...+||+| + +| +++|+++..|+.+.+.... ....++
T Consensus 200 ~~im~~~~~~~~v~~~~sv~~a~~~~~~~~~~~~~Vvd--~-~g---~~iG~vt~~dl~~~~~~~~--------~~~~~v 265 (321)
T PRK11543 200 HHLMRRDDAIPQVALTASVMDAMLELSRTGLGLVAVCD--A-QQ---QVQGVFTDGDLRRWLVGGG--------ALTTPV 265 (321)
T ss_pred HHHhccCCCCcEeCCCCCHHHHHHHHHHcCCCEEEEEc--C-CC---cEEEEecHHHHHHHHhCCC--------CcCCcH
Confidence 3457777 99999999999999999999999999994 3 34 8999999999987554210 012223
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 010368 362 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 426 (512)
Q Consensus 362 ~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~ 426 (512)
. ++|.+++.++.+++++.+|++.|.+++...+||+|++|+++|+|+++|++++
T Consensus 266 ~------------~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~~~lvGvIt~~di~~~ 318 (321)
T PRK11543 266 N------------EAMTRGGTTLQAQSRAIDAKEILMKRKITAAPVVDENGKLTGAINLQDFYQA 318 (321)
T ss_pred H------------HhcCCCCEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHhc
Confidence 3 4488889999999999999999999999999999988999999999999863
No 128
>cd04590 CBS_pair_CorC_HlyC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the CorC_HlyC domain. CorC_HlyC is a transporter associated domain. This small domain is found in Na+/H+ antiporters, in proteins involved in magnesium and cobalt efflux, and in association with some proteins of unknown function. The function of the CorC_HlyC domain is uncertain but it might be involved in modulating transport of ion substrates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role,
Probab=99.20 E-value=3.4e-10 Score=95.61 Aligned_cols=109 Identities=15% Similarity=0.250 Sum_probs=89.2
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++.+.+||++ .+.| +++|+++..+++++...... ..++..+
T Consensus 2 ~~~~i~~~~~i~~a~~~~~~~~~~~~~v~~--~~~~---~~~G~v~~~~l~~~~~~~~~---------~~~~~~~----- 62 (111)
T cd04590 2 DIVALDADDTLEEILELIAESGHSRFPVYD--GDLD---NIIGVVHVKDLLRALAEGEE---------DLDLRDL----- 62 (111)
T ss_pred ceEEEcCCCCHHHHHHHHhhCCCceEEEEC--CCCc---eEEEEEEHHHHHHHHHcCCC---------cCCHHHH-----
Confidence 578899999999999999999999999995 3324 79999999999987643210 0122222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+ .++.++.+++++.++++.|.+++.+.+||+|++|+++|++|++|++.
T Consensus 63 -------~-~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~di~~ 110 (111)
T cd04590 63 -------L-RPPLFVPESTPLDDLLEEMRKERSHMAIVVDEYGGTAGLVTLEDILE 110 (111)
T ss_pred -------h-cCCeecCCCCcHHHHHHHHHhcCCcEEEEEECCCCEEEEeEHHHhhc
Confidence 3 35788999999999999999999999999998899999999999864
No 129
>cd04585 CBS_pair_ACT_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The i
Probab=99.20 E-value=3.3e-10 Score=97.05 Aligned_cols=120 Identities=20% Similarity=0.306 Sum_probs=93.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+++...+||++ . | +++|+++..+++++......... ..+...+..
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~i~~~~l~~~~~~~~~~~~---------~~~~~~~~~ 65 (122)
T cd04585 2 NPITVTPDTSLMEALKLMKENSIRRLPVVD--R--G---KLVGIVTDRDLKLASPSKATTLD---------IWELYYLLS 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHhCCcceeeEec--C--C---eEEEEEeHHHHHHhhhccccccc---------chhhhhhhc
Confidence 567899999999999999999999999994 2 4 89999999999987643211100 000000001
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
...+.++|.+++.++.+++++.++++.|.+.+.+.+||++++|+++|+||..|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvvt~~di~~ 121 (122)
T cd04585 66 KIKVSDIMTRDPITVSPDASVEEAAELMLERKISGLPVVDDQGRLVGIITESDLFR 121 (122)
T ss_pred ccCHHHhccCCCeEeCCCCcHHHHHHHHHHcCCCceeEECCCCcEEEEEEHHHhhh
Confidence 11344557778999999999999999999999999999998899999999999875
No 130
>cd04629 CBS_pair_16 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2e-10 Score=97.44 Aligned_cols=112 Identities=21% Similarity=0.327 Sum_probs=90.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++.+.+||++ .+ + +++|+++..++++.+....... ....++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~-~---~~~G~v~~~~l~~~~~~~~~~~-----~~~~~v~------- 63 (114)
T cd04629 2 NPVTFTPDMSVTEAVEKLLKSKISGGPVVD--DN-G---NLVGFLSEQDCLKQLLESSYHC-----DGVATVR------- 63 (114)
T ss_pred CCeEeCCCCCHHHHHHHHHhcCCCCccEEC--CC-C---eEEEEeehHHHHHHhhhhhhcc-----CCCccHH-------
Confidence 567899999999999999999999999994 33 3 7999999999998665421000 0112233
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
++|..++..+.+++++.++++.|.+++.+.+||+|+ |+++|+++.+|+++
T Consensus 64 -----~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvit~~di~~ 113 (114)
T cd04629 64 -----DIMTTEVLTVSPDDSIVDLAQLMLKAKPKRYPVVDD-GKLVGQISRRDVLR 113 (114)
T ss_pred -----HHhccCceEECCCCcHHHHHHHHHHhCCCccCEEEC-CEEEEEEEHHHHhc
Confidence 336777889999999999999999999999999987 99999999999874
No 131
>cd04626 CBS_pair_13 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.20 E-value=2.5e-10 Score=96.44 Aligned_cols=109 Identities=15% Similarity=0.303 Sum_probs=89.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++..+.+++++.+|++.|.+++.+.+||++ . .| +++|+++..|++.+..... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d--~-~~---~~~G~v~~~dl~~~~~~~~--------~~~~~v~~~----- 62 (111)
T cd04626 2 DFPTIDEDASIREALHEMLKYNTNEIIVKD--N-EE---KLKGVVTFTDILDLDLFES--------FLEKKVFNI----- 62 (111)
T ss_pred CceEECCCccHHHHHHHHHHhCCCeEEEEc--C-CC---CEEEEEehHHhHHHHhhcc--------cccCcHHHH-----
Confidence 577899999999999999999999999994 2 34 7999999999986543210 012233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.+|++.|.+++...+||+++ |+++|+||..|++.
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~di~~ 110 (111)
T cd04626 63 -------VSQDVFYVNEEDTIDEALDIMREKQIGRLPVVDD-NKLIGVVRTKDILD 110 (111)
T ss_pred -------hcCCcEEEcCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEhHHhcc
Confidence 7778889999999999999999999999999987 99999999999863
No 132
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=99.19 E-value=2.2e-10 Score=121.99 Aligned_cols=118 Identities=14% Similarity=0.240 Sum_probs=97.9
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCC
Q 010368 372 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 451 (512)
Q Consensus 372 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 451 (512)
+++++|.+++.++.+++++.++++.|.+++++.+||+|++++++|+|+..|+++....... ..+.++.++|
T Consensus 336 ~v~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd~~~~~~Givt~~dl~~~~~~~~~----~~~~~v~~im----- 406 (454)
T TIGR01137 336 TVKDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVTEAGKVLGSVTLRELLSALFAGKA----NPDDAVSKVM----- 406 (454)
T ss_pred CHHHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHHhccCC----CcCCCHHHhc-----
Confidence 4566788899999999999999999999999999999988999999999999885543211 1234678876
Q ss_pred CCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 452 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 452 ~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
..++.++.+++++.++++.|.+++ ++||++ +++++|+||++||+++|
T Consensus 407 --------~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~-~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 407 --------SKKFIQIGEGEKLSDLSKFLEKNS---SAIVTE-EGKPIGVVTKIDLLSFL 453 (454)
T ss_pred --------CCCCeEECCcCcHHHHHHHHHHCC---eeEEEE-CCEEEEEEEHHHHHHhh
Confidence 567889999999999999998864 355554 79999999999999986
No 133
>cd04586 CBS_pair_BON_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the BON (bacterial OsmY and nodulation domain) domain. BON is a putative phospholipid-binding domain found in a family of osmotic shock protection proteins. It is also found in some secretins and a group of potential haemolysins. Its likely function is attachment to phospholipid membranes. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=1.6e-10 Score=101.65 Aligned_cols=128 Identities=19% Similarity=0.347 Sum_probs=92.9
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCccccc--Cccccc--
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILK--LPICAI-- 364 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~--~~v~~l-- 364 (512)
+++.++.+++++.+|++.|.+++.+++||++ +. + +++|+++..+++++....+..... .+.. ......
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~~-~---~~~Gvi~~~dl~~~~~~~~~~~~~--~~~~~~~~~~~~~~ 73 (135)
T cd04586 2 TDVVTVSPETSVAEAARLMLDNHISGLPVVD--DD-G---RLVGIVSEGDLLRRAELGTERRRA--RWLDLLAGAEELAA 73 (135)
T ss_pred CCCEEeCCCCCHHHHHHHHHHcCCCCceEEC--CC-C---CEEEEeeHHHHHHHhcccCcchhh--hHHHHhcchHHHHH
Confidence 5788999999999999999999999999994 33 3 799999999998765432110000 0000 000000
Q ss_pred cC-cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 365 PV-GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 365 ~i-g~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.. ......+.++|..++..+.+++++.++++.|.+.+.+.+||+| +|+++|+|+++|+++
T Consensus 74 ~~~~~~~~~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~l~Vvd-~g~~~Gvit~~di~~ 134 (135)
T cd04586 74 AFVRSHGRKVADVMTRPVVTVGEDTPLAEVAELMEEHRIKRVPVVR-GGRLVGIVSRADLLR 134 (135)
T ss_pred HHHHhcCCCHHHHhCCCceEeCCCCcHHHHHHHHHHcCCCccCEec-CCEEEEEEEhHhhhc
Confidence 00 0001123445777889999999999999999999999999999 899999999999864
No 134
>cd04596 CBS_pair_DRTGG_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=2.6e-10 Score=96.05 Aligned_cols=106 Identities=18% Similarity=0.304 Sum_probs=89.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
.++.++.+++++.+|++.|.+++.+.+||++ . +| +++|+++..+++... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~a~~~~~~~~~~~~~V~d--~-~~---~~~G~v~~~~l~~~~-------------~~~~v~~~---- 58 (108)
T cd04596 2 EDTGYLTTTDTVKDWHELNKETGHSRFPVVD--E-KN---KVVGIVTSKDVAGKD-------------PDTTIEKV---- 58 (108)
T ss_pred CccEEeCCCCCHHHHHHHHHHcCCCceeEEC--C-CC---eEEEEecHHHHhccc-------------ccccHHHH----
Confidence 4678999999999999999999999999994 3 34 899999999996421 01223333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 59 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~G~it~~di~~ 107 (108)
T cd04596 59 --------MTKNPITVNPKTSVASVAHMMIWEGIEMLPVVDDNKKLLGIISRQDVLK 107 (108)
T ss_pred --------hcCCCeEECCCCCHHHHHHHHHHcCCCeeeEEcCCCCEEEEEEHHHhhc
Confidence 6677889999999999999999999999999998999999999999874
No 135
>cd04595 CBS_pair_DHH_polyA_Pol_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with an upstream DHH domain which performs a phosphoesterase function and a downstream polyA polymerase domain. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.19 E-value=3.7e-10 Score=95.30 Aligned_cols=108 Identities=19% Similarity=0.394 Sum_probs=90.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
+++.++.++.++.+|++.|.+++...+||++ . | +++|+++..++++.+.... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~v~~~dl~~~~~~~~---------~~~~~~~~---- 61 (110)
T cd04595 2 SPVKTVRPEATIEEARELLLRYGHTALPVVE--G--G---RVVGIISRRDVEKALRHGL---------GHAPVKDY---- 61 (110)
T ss_pred CCceEeCCCCcHHHHHHHHHHcCCCeeeEee--C--C---EEEEEEEHHHHHHHHhccc---------ccCcHHHH----
Confidence 4678999999999999999999999999995 3 4 7999999999987653211 12233333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++..+.+++++.+++++|.+.+.+.+||++ +|+++|+||..|+++
T Consensus 62 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~-~~~~~Gvvt~~di~~ 109 (110)
T cd04595 62 --------MSTDVVTVPPDTPLSEVQELMVEHDIGRVPVVE-DGRLVGIVTRTDLLR 109 (110)
T ss_pred --------hcCCCEEECCCCcHHHHHHHHHHcCCCeeEEEe-CCEEEEEEEhHHhhc
Confidence 777889999999999999999999999999998 889999999999864
No 136
>cd04615 CBS_pair_2 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.19 E-value=3.6e-10 Score=95.73 Aligned_cols=111 Identities=14% Similarity=0.252 Sum_probs=89.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+...+.+++++.+|++.|.+.+.+.+||++ .. + +++|+++..++++.+.... .....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~-~---~~~G~v~~~dl~~~~~~~~-------~~~~~~i~~~----- 63 (113)
T cd04615 2 KPSCVVLNTDIARAVAEMYTSGSRALPVVD--DK-K---RLVGIITRYDVLSYALESE-------ELKDAKVREV----- 63 (113)
T ss_pred CCEEeeCCCcHHHHHHHHHHcCCceEeEEc--CC-C---CEEEEEEHHHHHHhhhhhh-------hhcCCcHHHh-----
Confidence 357789999999999999999999999995 23 3 7999999999987543210 0111223333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.++++.|.+.+...+||+|++|+++|+++..|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvvt~~dl~~ 112 (113)
T cd04615 64 -------MNSPVITIDANDSIAKARWLMSNNNISRLPVLDDKGKVGGIVTEDDILR 112 (113)
T ss_pred -------ccCCceEECCCCcHHHHHHHHHHcCCCeeeEECCCCeEEEEEEHHHhhc
Confidence 6678889999999999999999999999999998899999999999863
No 137
>cd04800 CBS_pair_CAP-ED_DUF294_PBI_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pa
Probab=99.19 E-value=3.2e-10 Score=95.78 Aligned_cols=109 Identities=21% Similarity=0.399 Sum_probs=89.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+++.+.+||++ . + +++|+++..++++.+.... . ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~i~V~~--~--~---~~~G~v~~~~l~~~~~~~~-~------~~~~~i~~~----- 62 (111)
T cd04800 2 PPVTCSPDTTIREAARLMTEHRVSSLLVVD--D--G---RLVGIVTDRDLRNRVVAEG-L------DPDTPVSEV----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCeEEEEE--C--C---EEEEEEEhHHHHHHHhccC-C------CccCCHHHH-----
Confidence 577899999999999999999999999995 2 4 8999999999987554210 0 011223333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++..+.+++++.++++.|.+.+.+++||+++ |+++|+++.+|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Giit~~di~~ 110 (111)
T cd04800 63 -------MTAPPITIPPDATVFEALLLMLERGIHHLPVVDD-GRLVGVISATDLLR 110 (111)
T ss_pred -------hCCCCeEECCCCcHHHHHHHHHHcCCCeeeEeEC-CEEEEEEEHHHhhc
Confidence 7778899999999999999999999999999986 99999999999875
No 138
>cd04636 CBS_pair_23 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.19 E-value=3e-10 Score=99.48 Aligned_cols=127 Identities=17% Similarity=0.323 Sum_probs=92.5
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccC-cc--ccccC
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKL-PI--CAIPV 366 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~-~v--~~l~i 366 (512)
+++++.+++++.+|++.|.+++++.+||++ ++ + +++|+++..++++++........ ...... .. .+...
T Consensus 2 ~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d--~~-~---~~~G~i~~~~l~~~~~~~~~~~~--~~~~~~~~~~~~~~~~ 73 (132)
T cd04636 2 DVITVKKDDTLRDVVEILLTGKISGVPVVD--NE-G---RVVGIVSEGDLIRKIYKGKGLFY--VTLLYSVIFLDESKIK 73 (132)
T ss_pred CCeEeCCCCcHHHHHHHHHHhCCCccceEC--CC-C---CEEEEEeHHHHHHHHhccCCccc--ccccccccccchHHHH
Confidence 578899999999999999999999999994 33 3 79999999999987754321100 000000 00 00000
Q ss_pred cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 367 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 367 g~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
......+.++|.+++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 74 ~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~iGvit~~dl~~ 131 (132)
T cd04636 74 KLLGKKVEEIMTKKVITVDEDTTIEDVARIMSKKNIKRLPVVDD-GKLVGIISRGDIIR 131 (132)
T ss_pred HHcCCCHHHhccCCceEECCCCcHHHHHHHHHHCCCCeeEEEEC-CEEEEEEEHHHhhc
Confidence 00001344557778899999999999999999999999999997 99999999999875
No 139
>cd04604 CBS_pair_KpsF_GutQ_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with KpsF/GutQ domains in the API [A5P (D-arabinose 5-phosphate) isomerase] protein. These APIs catalyze the conversion of the pentose pathway intermediate D-ribulose 5-phosphate into A5P, a precursor of 3-deoxy-D-manno-octulosonate, which is an integral carbohydrate component of various glycolipids coating the surface of the outer membrane of Gram-negative bacteria, including lipopolysaccharide and many group 2 K-antigen capsules. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other funct
Probab=99.18 E-value=4.5e-10 Score=95.15 Aligned_cols=111 Identities=21% Similarity=0.396 Sum_probs=91.4
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.++++.|.+.+.+.+||++ .+ | +++|+++..++++++...... ...++.
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~d--~~-~---~~~G~v~~~~i~~~~~~~~~~-------~~~~v~------- 62 (114)
T cd04604 3 ALPLVSPDTSLKDALLEMSRKGLGMTAVVD--ED-G---RLVGIFTDGDLRRALEKGLDI-------LTLPVA------- 62 (114)
T ss_pred cccccCCCCcHHHHHHHHHhcCccEEEEEc--CC-C---CEEEEechHHHHHHHhccCcc-------ccCCHH-------
Confidence 466789999999999999988899999995 33 3 799999999999877643211 011233
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
++|..++.++.+++++.+++++|...+...+||++++++++|+|+..||++
T Consensus 63 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~iG~it~~di~~ 113 (114)
T cd04604 63 -----DVMTRNPKTIDPDALAAEALELMEENKITALPVVDDNGRPVGVLHIHDLLR 113 (114)
T ss_pred -----HhhccCCeEECCCCcHHHHHHHHHHcCCCEEEEECCCCCEEEEEEHHHhhc
Confidence 337777889999999999999999999999999998899999999999874
No 140
>cd02858 Esterase_N_term Esterase N-terminal domain. Esterases catalyze the hydrolysis of organic esters to release an alcohol or thiol and acid. The term can be applied to enzymes that hydrolyze carboxylate, phosphate and sulphate esters, but is more often restricted to the first class of substrate. The N-terminus of esterase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=99.18 E-value=1.3e-10 Score=93.91 Aligned_cols=66 Identities=24% Similarity=0.373 Sum_probs=57.6
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEE-eCCceEEEEEEECCEEeeCCCCCeee
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEWRHDEHQPFIS 95 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg~w~~d~~~~~~~ 95 (512)
.++|+ |...+++|.|.|+|++|.. .+|.+. ..|.|++++. |.+|.|+|+|+|||.|..||..+.-.
T Consensus 7 ~v~F~vwAP~A~~V~L~~~~~~~~~-~~m~~~--~~G~W~~~v~~l~~g~Y~Y~~~vdg~~~~DP~s~~~~ 74 (85)
T cd02858 7 TVTFRLFAPKANEVQVRGSWGGAGS-HPMTKD--EAGVWSVTTGPLAPGIYTYSFLVDGVRVIDPSNPTTK 74 (85)
T ss_pred cEEEEEECCCCCEEEEEeecCCCcc-EeCeEC--CCeEEEEEECCCCCcEEEEEEEECCeEecCCCCCcee
Confidence 46787 9999999999999998875 689874 3699999995 88899999999999999999998644
No 141
>cd04613 CBS_pair_SpoIVFB_EriC_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase a
Probab=99.17 E-value=4.4e-10 Score=95.10 Aligned_cols=111 Identities=24% Similarity=0.365 Sum_probs=91.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+++++.+||++ .+ | +++|+++..++++++..... .-..++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-~---~~~G~v~~~~l~~~~~~~~~-------~~~~~v~------- 61 (114)
T cd04613 2 DVVTIPEDTPLNELLDVIAHSPENNFPVVD--DD-G---RLVGIVSLDDIREILFDPSL-------YDLVVAS------- 61 (114)
T ss_pred CceeeCCCCcHHHHHHHHHhCCCcceeEEC--CC-C---CEEEEEEHHHHHHHHhcccc-------cccEEHH-------
Confidence 567899999999999999999999999994 33 4 79999999999876543110 0012233
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~liGivs~~Di~~ 425 (512)
++|..++.++.+++++.++++.|...+.+.+||+++ +++++|+++..|++.
T Consensus 62 -----~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~~Gvvt~~di~~ 113 (114)
T cd04613 62 -----DIMTKPPVVVYPEDSLEDALKKFEDSDYEQLPVVDDDPGKLLGILSRSDLLS 113 (114)
T ss_pred -----HhccCCCcEEcCCCCHHHHHHHHhhCCccEeeEEeCCCCEEEEEEEhHHhhc
Confidence 337778899999999999999999999999999987 789999999999864
No 142
>cd04622 CBS_pair_9 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.17 E-value=5.5e-10 Score=94.54 Aligned_cols=110 Identities=21% Similarity=0.359 Sum_probs=89.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHH-HHHhhcccCCCCcccccCccccccCcc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILK-CVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~-~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
+++++.+++++.+|++.|.+++.+.+||++ . | +++|+++..+++. .+.... .....++.
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~--~--~---~~~G~i~~~~l~~~~~~~~~-------~~~~~~~~------ 61 (113)
T cd04622 2 DVVTVSPDDTIREAARLMREHDVGALPVCE--N--D---RLVGIVTDRDIVVRAVAEGR-------DPDTTTVG------ 61 (113)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEee--C--C---EEEEEEEhHHHHHHHhhccC-------CcccCCHH------
Confidence 578899999999999999999999999994 2 4 8999999999873 222210 00011133
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
++|...+.++.+++++.++++.|...+.+++||++++|+++|+++..|+++
T Consensus 62 ------~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 112 (113)
T cd04622 62 ------DVMTRGVVTVTEDDDVDEAARLMREHQVRRLPVVDDDGRLVGIVSLGDLAR 112 (113)
T ss_pred ------HhccCCccEECCCCCHHHHHHHHHHcCCCeeeEECCCCcEEEEEEHHHhhc
Confidence 337778889999999999999999999999999998899999999999864
No 143
>cd04612 CBS_pair_SpoIVFB_EriC_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with either the SpoIVFB domain (sporulation protein, stage IV cell wall formation, F locus, promoter-distal B) or the chloride channel protein EriC. SpoIVFB is one of 4 proteins involved in endospore formation; the others are SpoIVFA (sporulation protein, stage IV cell wall formation, F locus, promoter-proximal A), BofA (bypass-of-forespore A ), and SpoIVB (sporulation protein, stage IV cell wall formation, B locus). SpoIVFB is negatively regulated by SpoIVFA and BofA and activated by SpoIVB. It is thought that SpoIVFB, SpoIVFA, and BofA are located in the mother-cell membrane that surrounds the forespore and that SpoIVB is secreted from the forespore into the space between the two where it activates SpoIVFB. EriC is involved in inorganic ion transport and metabolism. CBS is a small domain originally identified in cystathionine beta-synthase an
Probab=99.17 E-value=6.3e-10 Score=93.75 Aligned_cols=110 Identities=21% Similarity=0.358 Sum_probs=90.5
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++.+.+++++.+|++.|.+.+.+.+||++ . + +++|+++..|+++........ ..++
T Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~--~---~~~G~v~~~dl~~~~~~~~~~--------~~~~------- 58 (111)
T cd04612 1 PDVVTVPVDLTVDEVLALMFGERHRGYPVVD--D--G---RLVGIVTLADIRRVPAEGREA--------TVLV------- 58 (111)
T ss_pred CCCEEeCCCCcHHHHHHHHHHcCCCcceEee--C--C---eEEEEEEHHHHHHHHhcCccc--------ccCH-------
Confidence 3578899999999999999999999999994 3 4 799999999998755421100 0112
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.+.|..++.++.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus 59 -----~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~it~~di~~ 110 (111)
T cd04612 59 -----GDVMTRDPVTASPDETLRDALKRMAERDIGRLPVVDDSGRLVGIVSRSDLLR 110 (111)
T ss_pred -----HHhccCCCeEECCCCCHHHHHHHHHhCCCCeeeEEcCCCCEEEEEEHHHhhh
Confidence 2336778899999999999999999999999999998899999999999865
No 144
>cd04633 CBS_pair_20 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.16 E-value=3.4e-10 Score=97.17 Aligned_cols=120 Identities=23% Similarity=0.485 Sum_probs=92.4
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.+++++.+|++.|.+++.+.+||++ . | +++|+++..++++++......... ..........
T Consensus 1 ~~~~~i~~~~~~~~~~~~l~~~~~~~i~V~~--~--~---~~~G~v~~~~l~~~~~~~~~~~~~--~~~~~~~~~~---- 67 (121)
T cd04633 1 KPVITVSPDDRVSHARRLMLDHDISRLPVIE--G--G---KLVGIVTEKDIADALRSFRPLVRD--RHQERRIRNL---- 67 (121)
T ss_pred CCCEEECCCCcHHHHHHHHHHcCCCeeEEEE--C--C---EEEEEEchHHHHHhhhhhhhcccc--hhhhhhhhcc----
Confidence 3678899999999999999999999999995 2 4 899999999998876532211000 0000011111
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.++++|..++..+.+++++.+++++|.+.+.+.+||+|+ |+++|+++.+|+++
T Consensus 68 ---~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~Gvi~~~dl~~ 120 (121)
T cd04633 68 ---PVSDIMTRPVITIEPDTSVSDVASLMLENNIGGLPVVDD-GKLVGIVTRTDILR 120 (121)
T ss_pred ---CHHHHccCCceEECCCCcHHHHHHHHHHcCCCcccEEEC-CEEEEEEEHHHhhc
Confidence 233447778899999999999999999999999999987 99999999999874
No 145
>cd04602 CBS_pair_IMPDH_2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentos
Probab=99.16 E-value=6.1e-10 Score=94.80 Aligned_cols=110 Identities=19% Similarity=0.322 Sum_probs=87.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
.+++++.+++++.+|++.|.+++...+||+|....+| +++|+++..|++... . . ..++.++
T Consensus 2 ~~~~~i~~~~~~~~~~~~~~~~~~~~~~V~d~~~~~~---~~~G~v~~~dl~~~~-~---~--------~~~v~~~---- 62 (114)
T cd04602 2 TDPSVLSPDHTVADVLEIKEKKGFSGIPVTEDGKSGG---KLLGIVTSRDIDFLT-D---S--------ETPLSEV---- 62 (114)
T ss_pred CCCeEcCCCCCHHHHHHHHHHcCCCceEEeeCCCcCC---EEEEEEEhHHhhhhh-c---c--------CCCHHHh----
Confidence 3567889999999999999999999999995211134 899999999986321 0 0 1123333
Q ss_pred cccccCCCCCCCceeecC--CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRP--SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~--~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|......+.. ++++.++++.|.+++...+||++++|+++|+||++|+++
T Consensus 63 --------~~~~~~~~~~~~~~~l~~~l~~~~~~~~~~~pVv~~~~~~~Gvit~~di~~ 113 (114)
T cd04602 63 --------MTPREVLVVAPTGITLEEANEILRESKKGKLPIVNDDGELVALVTRSDLKK 113 (114)
T ss_pred --------cCCCceEEECCCCCCHHHHHHHHHhcCCCceeEECCCCeEEEEEEHHHhhc
Confidence 6666667756 999999999999999999999998899999999999864
No 146
>cd04587 CBS_pair_CAP-ED_DUF294_PBI_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with either the CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain or the PB1 (Phox and Bem1p) domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. The PB1 domain adopts a beta-grasp fold, similar to that found in ubiquitin and Ras-binding domains. A motif, variously termed OPR, PC and AID, represents the most conserved region of the majority of PB1 domains, and is necessary for PB1 domain function. This function is the formation of PB1 domain heterodimers, although not all PB1 domain pai
Probab=99.16 E-value=6.7e-10 Score=94.02 Aligned_cols=111 Identities=15% Similarity=0.203 Sum_probs=90.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++.+.+||++ . + +++|+++..++++.+...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~--~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~i----- 63 (113)
T cd04587 2 KPATVSPTTTVQEAAKLMREKRVSCVLVMD--G--N---KLVGIFTSKDIALRVVAQGLD------PESTLVERV----- 63 (113)
T ss_pred CCeEeCCCCCHHHHHHHHHHcCCCeEEEEE--C--C---EEEEEEEhHHHHHHHHhcCCC------cCcCCHHHh-----
Confidence 567889999999999999999999999994 2 4 899999999998644421100 001233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.++++.|.+++..++||++++++++|+|+..|++.
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~~~~~~Gvvs~~dl~~ 112 (113)
T cd04587 64 -------MTPNPVCATSDTPVLEALHLMVQGKFRHLPVVDKSGQVVGLLDVTKLTH 112 (113)
T ss_pred -------cCCCCeEEcCCCCHHHHHHHHHHcCCCcccEECCCCCEEEEEEHHHhcc
Confidence 7778889999999999999999999999999998899999999999864
No 147
>PRK10892 D-arabinose 5-phosphate isomerase; Provisional
Probab=99.16 E-value=2.6e-10 Score=116.10 Aligned_cols=117 Identities=15% Similarity=0.186 Sum_probs=95.2
Q ss_pred CCcCCC--CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCcc
Q 010368 284 GKAFPR--PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPI 361 (512)
Q Consensus 284 g~~~~~--~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v 361 (512)
+.+|.+ +++++.+++++.+|++.|.+++...+||++ ++| +++|++|..|+.+.+.... .....+
T Consensus 205 ~dim~~~~~~~~v~~~~sl~~a~~~~~~~~~~~~vVvd---~~g---~lvGivt~~Dl~~~~~~~~-------~~~~~~- 270 (326)
T PRK10892 205 SDIMHTGDEIPHVSKTASLRDALLEITRKNLGMTVICD---DNM---KIEGIFTDGDLRRVFDMGI-------DLRQAS- 270 (326)
T ss_pred HHHhCCCCCCeEECCCCCHHHHHHHHHhcCCCeEEEEc---CCC---cEEEEEecHHHHHHHhcCC-------CcccCC-
Confidence 456776 899999999999999999999988888884 344 8999999999986443210 011123
Q ss_pred ccccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 010368 362 CAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 426 (512)
Q Consensus 362 ~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~ 426 (512)
++++|.+++.++.+++++.+|++.|.+++++.+||++ +++++|+|+++|+++.
T Consensus 271 -----------v~~im~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVv~-~~~lvGiit~~dil~~ 323 (326)
T PRK10892 271 -----------IADVMTPGGIRVRPGILAVDALNLMQSRHITSVLVAD-GDHLLGVLHMHDLLRA 323 (326)
T ss_pred -----------HHHhcCCCCEEECCCCCHHHHHHHHHHCCCcEEEEee-CCEEEEEEEhHHhHhc
Confidence 3444888999999999999999999999999999997 6899999999999863
No 148
>cd04621 CBS_pair_8 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.16 E-value=5.7e-10 Score=98.42 Aligned_cols=129 Identities=15% Similarity=0.215 Sum_probs=92.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccC-CCCcccc---cCcccccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHC-SSSLPIL---KLPICAIP 365 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~-~~~~~~l---~~~v~~l~ 365 (512)
++.++.+++++.+|++.|.+++.+.+||+| . +| +++|+++..++++++....... ......+ ...-....
T Consensus 2 ~~~~v~~~~~~~~a~~~~~~~~~~~l~V~d--~-~~---~~~Giv~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (135)
T cd04621 2 DIATVHPEHSLLHVVDEMEKNGVGRVIVVD--D-NG---KPVGVITYRDLAFAEFEDNERGLPKKSIKMKRKAGQKRYRY 75 (135)
T ss_pred CceEeCCCCcHHHHHHHHHHcCCCcceEEC--C-CC---CEEEEEeHHHHHHHhhcccccccchhhhhhhhhcccccccc
Confidence 467889999999999999999999999994 3 34 7999999999998764321100 0000000 00000000
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 366 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 366 ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
.......+.++|..++..+.+++++.++++.|.+.+.+.+||+++ |+++|+|+.+|+++
T Consensus 76 ~~~~~~~v~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~l~Vv~~-~~~~Gvit~~di~~ 134 (135)
T cd04621 76 VKEVPLVAEDIMTEEIITVSPNDDVVDAAKLMLEANISGLPVVDN-DNIVGVITKTDICR 134 (135)
T ss_pred cccccccHHHhcCCCCeEECCCCCHHHHHHHHHHcCCCEEEEEeC-CEEEEEEEHHHHhh
Confidence 001112355668888899999999999999999999999999986 99999999999875
No 149
>cd04637 CBS_pair_24 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.15 E-value=5.4e-10 Score=96.14 Aligned_cols=120 Identities=18% Similarity=0.306 Sum_probs=93.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++++.+||++ . | +++|+++..++++.+........ ....+. ..+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~v~~~~l~~~~~~~~~~~~-------~~~~~~--~~~ 65 (122)
T cd04637 2 RVVTVEMDDRLEEVREIFEKHKFHHLLVVE--D--N---ELVGVISDRDYLKAISPFLGTAG-------ETEKDL--ATL 65 (122)
T ss_pred CceEeCCCCCHHHHHHHHHhCCCCEEEEEe--C--C---eEEEEEEHHHHHHHHHHHhcccc-------chHHHH--HHH
Confidence 578899999999999999999999999995 2 4 89999999999887654321100 000000 011
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
...++++|..++..+.+++++.++++.|.+++...+||+|++++++|+++..|++.
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~vv~~~~~~~Gvit~~dll~ 121 (122)
T cd04637 66 NRRAHQIMTRDPITVSPDTPVDEASKLLLENSISCLPVVDENGQLIGIITWKDLLK 121 (122)
T ss_pred HhHHHHhhcCCCeeeCCCCcHHHHHHHHHHcCCCeEeEECCCCCEEEEEEHHHhhh
Confidence 11344557788999999999999999999999999999998899999999999875
No 150
>cd04632 CBS_pair_19 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.14 E-value=8.3e-10 Score=95.97 Aligned_cols=124 Identities=15% Similarity=0.242 Sum_probs=90.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++.+.+++++.+|+++|.+.+++.+||++ ++ | +++|+++..+++.++........ ........ ....
T Consensus 2 ~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~--~~-~---~~~G~it~~dl~~~~~~~~~~~~-----~~~~~~~~-~~~~ 69 (128)
T cd04632 2 DVITVREDDSVGKAINVLREHGISRLPVVD--DN-G---KLTGIVTRHDIVDFVVRDRDKAR-----TGDRSGEK-ERML 69 (128)
T ss_pred CceEeCCCCCHHHHHHHHHHcCCCEEEEEC--CC-C---cEEEEEEHHHHHHHHhhhhhhcc-----hhhhhhhh-hhhc
Confidence 567889999999999999999999999994 33 4 79999999999876543210000 00000000 0000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd--~~g~liGivs~~Di~~ 425 (512)
...+.++|..+++++.+++++.++++.|.+.+...+||++ ++|+++|+||++|++.
T Consensus 70 ~~~~~~~~~~~~~~v~~~~~l~~~l~~~~~~~~~~~~V~~~~~~~~~~Gvit~~di~~ 127 (128)
T cd04632 70 DLPVYDAMSSPVITASPNDSVRDAVDRMLENDDSSVVVVTPDDDTKVVGILTKKDVLR 127 (128)
T ss_pred cCcHHHHhcCCCceECCCCcHHHHHHHHHhCCCCeEeEeccCCCCcEEEEEEhHhhhc
Confidence 1123344778899999999999999999999999999984 4689999999999864
No 151
>COG0517 FOG: CBS domain [General function prediction only]
Probab=99.14 E-value=9.7e-10 Score=93.53 Aligned_cols=111 Identities=26% Similarity=0.503 Sum_probs=94.1
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccC
Q 010368 287 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 366 (512)
Q Consensus 287 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 366 (512)
+.+.++++.++.++.+|+..|.++++..+||++. . +++|++|.+|+++.+....... .+
T Consensus 5 ~~~~~~~v~~~~~~~~a~~~m~~~~~~~~~v~~~---~----~l~Giit~~di~~~~~~~~~~~--------~~------ 63 (117)
T COG0517 5 MTKDVITVKPDTSVRDALLLMSENGVSAVPVVDD---G----KLVGIITERDILRALAAGGKRL--------LP------ 63 (117)
T ss_pred ccCCCEEECCCCcHHHHHHHHHHcCCCEEEEeeC---C----EEEEEEEHHHHHHHHhccCCcc--------cc------
Confidence 4578999999999999999999999999999942 1 6999999999998887543210 02
Q ss_pred cccccccCCCCCCCceeecCCCCHHHHHHHHHh-cCCCEEEEECCCC-cEEEEEeHHHHH
Q 010368 367 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQ-AQVSSIPIVDDND-SLLDIYCRSDIT 424 (512)
Q Consensus 367 g~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-~~~~~lpVvd~~g-~liGivs~~Di~ 424 (512)
+.++|..++.++.++.++.++.+.|.+ ++++.+||+++++ +++|++|++|++
T Consensus 64 ------v~~v~~~~~~~~~~~~~~~~~~~~m~~~~~~~~lpVv~~~~~~lvGivt~~di~ 117 (117)
T COG0517 64 ------VKEVMTKPVVTVDPDTPLEEALELMVERHKIRRLPVVDDDGGKLVGIITLSDIL 117 (117)
T ss_pred ------HHHhccCCcEEECCCCCHHHHHHHHHHHcCcCeEEEEECCCCeEEEEEEHHHcC
Confidence 333477789999999999999999999 7999999999886 999999999973
No 152
>cd04625 CBS_pair_12 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=1.1e-09 Score=92.54 Aligned_cols=110 Identities=15% Similarity=0.357 Sum_probs=87.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
.+.++.+++++.+|++.|.+++...++|.+ + | +++|+++..|+++++...... ....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~v~~~----- 63 (112)
T cd04625 2 TIYTVAPETLLSEAVATMAEQDLGSLVVME---R-G---ELVGLLTFREVLQAMAQHGAG------VLDTTVRAI----- 63 (112)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCCeEEEee---C-C---EEEEEEEHHHHHHHHHhcCCc------hhcCCHHHH-----
Confidence 467889999999999999888887777763 3 4 899999999999876532100 011223333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.+|+++|.+++...+||++ +|+++|++|.+|+++
T Consensus 64 -------~~~~~~~v~~~~~l~~a~~~m~~~~~~~l~Vv~-~~~~~Gvvt~~dl~~ 111 (112)
T cd04625 64 -------MNPEPIVASPDDSIDEVRRLMVERHLRYLPVLD-GGTLLGVISFHDVAK 111 (112)
T ss_pred -------hCCCCeEECCCCCHHHHHHHHHHcCCCeeeEEE-CCEEEEEEEHHHhhc
Confidence 777788999999999999999999999999998 589999999999875
No 153
>cd04635 CBS_pair_22 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.13 E-value=6.8e-10 Score=95.43 Aligned_cols=120 Identities=19% Similarity=0.351 Sum_probs=91.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++.+.+||++ .. | +++|+++..++++.......... ..... ...
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~-~---~~~G~v~~~~l~~~~~~~~~~~~---~~~~~-------~~~ 65 (122)
T cd04635 2 EPVTCTPDDPVSKVWDLMLESGFTGLPVVQ--KA-G---ELIGIITRRDIIRAGSVRTSVED---QQRTQ-------TKA 65 (122)
T ss_pred CCEEeCCCCcHHHHHHHHHHcCCCcccEEC--CC-C---cEEEEEEcHHHHhhccccccccc---hhhhh-------hhc
Confidence 578899999999999999999999999994 33 4 79999999999875321100000 00000 001
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
...+.++|..++..+.+++++.++++.|.+.+.+.+||+|++|+++|++++.|+++
T Consensus 66 ~~~~~~~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~~g~~~Gvit~~dl~~ 121 (122)
T cd04635 66 SPTVEKIMSTPVYSVTPDDSIATAVELMLEHDIGRLPVVNEKDQLVGIVDRHDVLK 121 (122)
T ss_pred cCcHHHHhcCCCeeECCCCCHHHHHHHHHHcCCCeeeEEcCCCcEEEEEEhHHhhc
Confidence 11233447778899999999999999999999999999998899999999999874
No 154
>cd04589 CBS_pair_CAP-ED_DUF294_assoc_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the bacterial CAP_ED (cAMP receptor protein effector domain) family of transcription factors and the DUF294 domain. Members of CAP_ED, include CAP which binds cAMP, FNR (fumarate and nitrate reductase) which uses an iron-sulfur cluster to sense oxygen, and CooA a heme containing CO sensor. In all cases binding of the effector leads to conformational changes and the ability to activate transcription. DUF294 is a putative nucleotidyltransferase with a conserved DxD motif. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or
Probab=99.12 E-value=1.3e-09 Score=92.11 Aligned_cols=109 Identities=17% Similarity=0.260 Sum_probs=88.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++.+.+++++.+|++.|.+++...++|++ . | +++|+++..++++.+.... .....++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~v~~~~l~~~~~~~~-------~~~~~~i~~~----- 62 (111)
T cd04589 2 PPLIVDASTSIRDAARLMREHGADALLVRD--G--D---PRLGIVTRTDLLDAVLLDG-------LPSSTPVGEI----- 62 (111)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEec--C--C---eEEEEEEHHHHHHHHHcCC-------CCCCCCHHHH-----
Confidence 467889999999999999999999999994 3 4 7999999999987654210 0012233333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++..+.+++++.++++.|.+++...+||+++ ++++|+++..|+++
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~dl~~ 110 (111)
T cd04589 63 -------ATFPLITVDPDDFLFNALLLMTRHRIHRVVVREG-GEVVGVLEQTDLLS 110 (111)
T ss_pred -------hCCCcEEECCCCcHHHHHHHHHHhCccEEEEeeC-CEEEEEEEhHHhhc
Confidence 7778889999999999999999999999999985 89999999999875
No 155
>cd04802 CBS_pair_3 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic genera
Probab=99.12 E-value=1.5e-09 Score=91.85 Aligned_cols=110 Identities=21% Similarity=0.396 Sum_probs=88.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+.+.+.+||++ + + +++|+++..|+++.+...... ....++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~-~---~~~G~v~~~dl~~~~~~~~~~------~~~~~~~~~----- 63 (112)
T cd04802 2 NVITVDPDTTVYEAANIMTENNIGRLIVVD---N-E---KPVGIITERDLVKKVVSRNLK------PREVPVGEV----- 63 (112)
T ss_pred CcEEECCCCCHHHHHHHHHHCCCCEEEEEE---C-C---EEEEEEEHHHHHHHHhhccCC------cccCCHHHh-----
Confidence 567889999999999999999999999995 2 2 699999999999866432100 011223333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|.+++..+.+++++.++++.|.+.+...+||+|++ +++|+|+++|++.
T Consensus 64 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~-~~~Gvi~~~di~~ 111 (112)
T cd04802 64 -------MSTPLITIDPNASLNEAAKLMAKHGIKRLPVVDDD-ELVGIVTTTDIVM 111 (112)
T ss_pred -------cCCCcEEECCCCCHHHHHHHHHHcCCCeeEEeeCC-EEEEEEEhhhhhc
Confidence 77778899999999999999999999999999865 9999999999863
No 156
>PRK11573 hypothetical protein; Provisional
Probab=99.11 E-value=1e-09 Score=114.59 Aligned_cols=122 Identities=13% Similarity=0.211 Sum_probs=99.8
Q ss_pred ccCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhc
Q 010368 372 KIGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 448 (512)
Q Consensus 372 ~v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~ 448 (512)
.++++|. .++.+++.+.++.++++.+.+++++++||.++ .+.++|++..+|++....++.. .....+...
T Consensus 188 ~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~~~~~-------~~~~~l~~~ 260 (413)
T PRK11573 188 TVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMTEKKE-------FTKENMLRA 260 (413)
T ss_pred ChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhhccCc-------CCHHHHHhh
Confidence 3455575 47899999999999999999999999999975 3789999999999875433211 122222211
Q ss_pred CCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 449 GQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 449 ~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
.+++.+|++++++.++++.|.+++.+-..|+|+ .|...|+||+.||+..++|
T Consensus 261 -----------~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvDE-yG~~~GiVTleDilEeivG 312 (413)
T PRK11573 261 -----------ADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVDE-YGDIQGLVTVEDILEEIVG 312 (413)
T ss_pred -----------ccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEec-CCCeEEEeeHHHHHHHHhC
Confidence 257889999999999999999999999999996 9999999999999999986
No 157
>cd04640 CBS_pair_27 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.10 E-value=9.8e-10 Score=95.40 Aligned_cols=115 Identities=11% Similarity=0.146 Sum_probs=84.9
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHh--hcccCCCCcccccCccccccCc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR--YFRHCSSSLPILKLPICAIPVG 367 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~--~~~~~~~~~~~l~~~v~~l~ig 367 (512)
+++++.+++++.+|++.|.+++.+.+||++ .+ | +++|+++..|+.+.... ..... ......+++++
T Consensus 2 ~~~~v~~~~~i~~a~~~~~~~~~~~~~V~d--~~-~---~~~Giv~~~dl~~~~~~~~~~~~~---~~~~~~~v~~i--- 69 (126)
T cd04640 2 KPIVIPADTSIDEALELMIKHGVRLLLVVD--SD-D---NFIGVITAVDLLGEEPIKRIQEGG---ISRSELTVADV--- 69 (126)
T ss_pred CCeEECCCCcHHHHHHHHHHcCCcEEEEEc--CC-C---cEEEEEEHHHHhhChhhHHHHHcC---CCchheEHHHh---
Confidence 467899999999999999999999999994 33 3 79999999999852210 00000 00112223333
Q ss_pred ccccccCCCCCCCceee------cCCCCHHHHHHHHHhcCCCEEEEECCC-CcEEEEEeHHHHHH
Q 010368 368 TWVPKIGEPNRRPLAML------RPSASLSAALNLLVQAQVSSIPIVDDN-DSLLDIYCRSDITA 425 (512)
Q Consensus 368 ~~~~~v~~~m~~~~~~v------~~~~~l~~a~~~m~~~~~~~lpVvd~~-g~liGivs~~Di~~ 425 (512)
|..+...+ .+++++.++++.|.+++.+.+||+|++ |+++|+||++|+++
T Consensus 70 ---------m~~~~~~~~~~~~~~~~~~l~~~l~~m~~~~~~~lpVvd~~~~~~~G~it~~di~~ 125 (126)
T cd04640 70 ---------MTPKEDLKALDLEELENASVGDVVETLKASGRQHALVVDREHHQIRGIISTSDIAR 125 (126)
T ss_pred ---------cCchhhhccccHHHhccCcHHHHHHHHHHCCCceEEEEECCCCEEEEEEeHHHHhh
Confidence 65544332 368899999999999999999999986 79999999999864
No 158
>cd04609 CBS_pair_PALP_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the pyridoxal-phosphate (PALP) dependent enzyme domain upstream. The vitamin B6 complex comprises pyridoxine, pyridoxal, and pyridoxamine, as well as the 5'-phosphate esters of pyridoxal (PALP) and pyridoxamine, the last two being the biologically active coenzyme derivatives. The members of the PALP family are principally involved in the biosynthesis of amino acids and amino acid-derived metabolites, but they are also found in the biosynthetic pathways of amino sugars and other amine-containing compounds. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a pote
Probab=99.09 E-value=1.3e-09 Score=91.64 Aligned_cols=108 Identities=19% Similarity=0.393 Sum_probs=86.6
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
+++++.+++++.+|++.|.+++++.+||++ . + +++|+++..++++++...... ...++.++
T Consensus 2 ~~~~v~~~~~~~~~~~~~~~~~~~~~~V~~--~--~---~~~G~v~~~dl~~~~~~~~~~-------~~~~~~~~----- 62 (110)
T cd04609 2 DVVSVAPDDTVSQAIERMREYGVSQLPVVD--D--G---RVVGSIDESDLLDALIEGKAK-------FSLPVREV----- 62 (110)
T ss_pred CcEEECCCCcHHHHHHHHHHcCCceeeEee--C--C---eeEEEEeHHHHHHHHhccccc-------cCcCHHHH-----
Confidence 577899999999999999999999999994 2 4 799999999999876532110 11223333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|.+++..+.+++++.+++++|.+ . ..+||++++|+++|+++++|++.
T Consensus 63 -------~~~~~~~v~~~~~l~~~~~~~~~-~-~~~~vv~~~~~~~Gvvt~~di~~ 109 (110)
T cd04609 63 -------MGEPLPTVDPDAPIEELSELLDR-G-NVAVVVDEGGKFVGIITRADLLK 109 (110)
T ss_pred -------hcCCCceeCCCCcHHHHHHHHHh-C-CceeEEecCCeEEEEEeHHHhhc
Confidence 66778899999999999999987 3 34788988899999999999875
No 159
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=99.08 E-value=1.3e-09 Score=96.02 Aligned_cols=109 Identities=21% Similarity=0.332 Sum_probs=81.0
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccC-------cccccHHHHHhcCCCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHIN-------LSEMTIHQALQLGQDS 452 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~-------~~~~~v~~~l~~~~~~ 452 (512)
++.++.+++++.+|++.|...+.+.+||+|++|+++|+++..|+++........... .....+.+++....
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD~~g~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~~~~~-- 79 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVDSDDFLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVCTKGI-- 79 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHhhhhh--
Confidence 467899999999999999999999999999999999999999999866433211100 00011333431100
Q ss_pred CCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeC
Q 010368 453 YSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEA 492 (512)
Q Consensus 453 ~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~ 492 (512)
..+.|..++.++.+++++.+|++.|.+++++++||+|+
T Consensus 80 --~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~ 117 (133)
T cd04592 80 --SYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKR 117 (133)
T ss_pred --hhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecC
Confidence 00123467889999999999999999999999999985
No 160
>PLN02274 inosine-5'-monophosphate dehydrogenase
Probab=99.08 E-value=1.4e-09 Score=115.77 Aligned_cols=116 Identities=14% Similarity=0.209 Sum_probs=96.5
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccC
Q 010368 287 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 366 (512)
Q Consensus 287 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 366 (512)
+.++++++.+++++.+|+++|.+++++.+||++.+..+| +++|++|..|+... . ....++.++
T Consensus 106 mi~dpvtV~pd~tV~dA~~lm~~~~~~~lpVvD~~~~~G---klvGIVT~~DL~~v-~-----------~~~~~V~eI-- 168 (505)
T PLN02274 106 FVSDPVVKSPSSTISSLDELKASRGFSSVCVTETGTMGS---KLLGYVTKRDWDFV-N-----------DRETKLSEV-- 168 (505)
T ss_pred ccCCCeeeCCCCcHHHHHHHHHhcCCceEEEEeCCCcCC---eEEEEEEHHHHhhc-c-----------ccCCcHHHH--
Confidence 678999999999999999999999999999995211135 89999999999531 1 113344444
Q ss_pred cccccccCCCCCCC--ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 010368 367 GTWVPKIGEPNRRP--LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 429 (512)
Q Consensus 367 g~~~~~v~~~m~~~--~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~ 429 (512)
|.++ ++++.+++++.+|+++|.+++...+||+|++++++|+||++||++....
T Consensus 169 ----------Mt~~~~lvtv~~~~sL~eAl~~m~~~~~~~LPVVD~~g~LvGvITr~DIlk~~~~ 223 (505)
T PLN02274 169 ----------MTSDDDLVTAPAGIDLEEAEAVLKDSKKGKLPLVNEDGELVDLVTRTDVKRVKGY 223 (505)
T ss_pred ----------hccCCCcEEECCCCCHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEHHHHHHHhhC
Confidence 7755 7899999999999999999999999999999999999999999986643
No 161
>cd04601 CBS_pair_IMPDH This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the inosine 5' monophosphate dehydrogenase (IMPDH) protein. IMPDH is an essential enzyme that catalyzes the first step unique to GTP synthesis, playing a key role in the regulation of cell proliferation and differentiation. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain in IMPDH have been associated with retinitis pigmentosa.
Probab=99.08 E-value=1.1e-09 Score=92.04 Aligned_cols=107 Identities=20% Similarity=0.352 Sum_probs=86.2
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++.+.+++++.++++.|.+++...+||++ .+ | +++|+++..+++.... ...++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d--~~-~---~~~G~v~~~~l~~~~~------------~~~~v~~~---- 59 (110)
T cd04601 2 RDPITVSPDATVAEALELMAEYGISGLPVVD--DD-G---KLVGIVTNRDLRFETD------------LDKPVSEV---- 59 (110)
T ss_pred CCCeEeCCCCcHHHHHHHHHHcCCceEEEEc--CC-C---EEEEEEEhhHeeeccc------------CCCCHHHh----
Confidence 4678899999999999999999999999994 33 4 8999999999853110 01223333
Q ss_pred cccccCCCCCCCceeecC-CCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRP-SASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~-~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|...+..+.+ ++++.++++.|.+.+.+.+||+|++|+++|+|+.+|+++
T Consensus 60 --------~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~Vv~~~~~~~Gvi~~~dil~ 109 (110)
T cd04601 60 --------MTPENLLTTVEGTSLEEALELLHEHKIEKLPVVDDEGKLKGLITVKDIEK 109 (110)
T ss_pred --------cccCceEEecCCCCHHHHHHHHHHhCCCeeeEEcCCCCEEEEEEhhhhhc
Confidence 6555566666 999999999999999999999998899999999999864
No 162
>PRK07107 inosine 5-monophosphate dehydrogenase; Validated
Probab=99.08 E-value=1.3e-09 Score=115.83 Aligned_cols=110 Identities=21% Similarity=0.275 Sum_probs=91.1
Q ss_pred ceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccc
Q 010368 291 LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWV 370 (512)
Q Consensus 291 ~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~ 370 (512)
..++.+++|+.+|+++|.+++++.+||+|...+++ +++|++|..||... . ...+.++.++
T Consensus 107 ~~tV~pd~tl~eAl~~m~~~~~~~vpVVD~~~~~g---kLvGIVT~~DLr~~--~---------~~~~~~V~dI------ 166 (502)
T PRK07107 107 DSNLTPDNTLADVLDLKEKTGHSTVAVTEDGTAHG---KLLGIVTSRDYRIS--R---------MSLDTKVKDF------ 166 (502)
T ss_pred CCEeCCCCcHHHHHHHHHhcCCCeEEEEeCCCcCC---EEEEEEEcHHhhcc--c---------cCCCCCHHHH------
Confidence 36899999999999999999999999996211245 89999999998521 0 0123344444
Q ss_pred cccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 010368 371 PKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 426 (512)
Q Consensus 371 ~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~ 426 (512)
|.. +++++.+++++.+|+++|.++++..+||+|++++++|+||++|+++.
T Consensus 167 ------Mt~~~~~itv~~d~~l~eAl~lM~e~~i~~LPVVD~~g~LvGIIT~~Dilk~ 218 (502)
T PRK07107 167 ------MTPFEKLVTANEGTTLKEANDIIWDHKLNTLPIVDKNGNLVYLVFRKDYDSH 218 (502)
T ss_pred ------hCCCCCeEEECCCCcHHHHHHHHHHcCCCEEEEEcCCCeEEEEEEhHHHHhc
Confidence 775 78899999999999999999999999999988999999999999874
No 163
>cd04599 CBS_pair_GGDEF_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.07 E-value=1.8e-09 Score=90.06 Aligned_cols=102 Identities=19% Similarity=0.373 Sum_probs=86.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++..+.+++++.++++.|.+++.+.+||++ + + +++|+++..++++... ..++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~d---~-~---~~~Giv~~~~l~~~~~-------------~~~~~~------ 55 (105)
T cd04599 2 DPITIDPLDSVGRAARLMEKHRIGGLPVVE---D-G---KLVGIITSRDVRRAHP-------------NRLVAD------ 55 (105)
T ss_pred CCEEECCCCcHHHHHHHHHHcCCCEEEEEE---C-C---EEEEEEehHHhhcccc-------------cCCHHH------
Confidence 567889999999999999999999999994 2 4 7999999999975210 112333
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDIT 424 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~ 424 (512)
+|..++.++.+++++.++++.|.+++...+||+|+ |+++|++|..|++
T Consensus 56 ------~~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~-~~~~G~it~~~l~ 103 (105)
T cd04599 56 ------AMTREVVTISPEASLLEAKRLMEEKKIERLPVLRE-RKLVGIITKGTIA 103 (105)
T ss_pred ------HccCCCEEECCCCCHHHHHHHHHHcCCCEeeEEEC-CEEEEEEEHHHhc
Confidence 36678889999999999999999999999999987 9999999999986
No 164
>cd02205 CBS_pair The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic generali
Probab=99.06 E-value=4e-09 Score=88.14 Aligned_cols=111 Identities=24% Similarity=0.474 Sum_probs=90.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++..+.+++++.++++.|.+++.+.+||++ .+ + +++|+++.+++++.+........ ..
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-~---~~~G~v~~~~l~~~~~~~~~~~~-------~~--------- 59 (113)
T cd02205 2 DVVTVSPDDTVAEALRLMLEHGISGLPVVD--DD-G---RLVGIVTERDLLRALAEGGLDPL-------VT--------- 59 (113)
T ss_pred CceEecCCCCHHHHHHHHHhcCCceEEEEC--CC-C---CEEEEEeHHHHHHHHHhccCCcc-------cc---------
Confidence 467889999999999999999999999994 33 3 79999999999987764321100 00
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+.++|..++..+.+++++.++++.|.+.+.+.+||+|++++++|+++..|+++
T Consensus 60 ---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~~~~~~~G~i~~~dl~~ 112 (113)
T cd02205 60 ---VGDVMTRDVVTVSPDTSLEEAAELMLEHGIRRLPVVDDEGRLVGIVTRSDILR 112 (113)
T ss_pred ---HHHHhcCCceecCCCcCHHHHHHHHHHcCCCEEEEEcCCCcEEEEEEHHHhhc
Confidence 12236667888999999999999999999999999999999999999999864
No 165
>COG2905 Predicted signal-transduction protein containing cAMP-binding and CBS domains [Signal transduction mechanisms]
Probab=99.06 E-value=8.4e-10 Score=114.10 Aligned_cols=120 Identities=20% Similarity=0.307 Sum_probs=102.9
Q ss_pred CCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccc
Q 010368 283 HGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 362 (512)
Q Consensus 283 ~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~ 362 (512)
.+.++..+++++++..++.+|+..|.+++++++.+++ .++ ..+||+|.+|+.+.+....+. ..++
T Consensus 151 v~~~~~~~~~~v~~~~~i~~aa~km~~~gv~s~v~l~--~~~----~~~GIvT~~dl~~~v~~~g~~-------~~~~-- 215 (610)
T COG2905 151 VGEVKTLPAVTVSPQASIQDAARKMKDEGVSSLVVLD--DSG----PLLGIVTRKDLRSRVIADGRS-------KTQK-- 215 (610)
T ss_pred HHHHhcCCCcccCccCcHHHHHHHHHhcCCCeEEEEc--CCC----CccceeehHHHHHHHHhcCCC-------cccc--
Confidence 3567889999999999999999999999999999994 333 699999999999888764221 1333
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 010368 363 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 428 (512)
Q Consensus 363 ~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~ 428 (512)
|+++|..+++++...+.+.+|+-+|..++++++||++ +|+++|+|+..||+.+..
T Consensus 216 ----------V~evmT~p~~svd~~~~~feAml~m~r~~I~hl~V~e-~gq~~Gilt~~dIl~l~s 270 (610)
T COG2905 216 ----------VSEVMTSPVISVDRGDFLFEAMLMMLRNRIKHLPVTE-DGQPLGILTLTDILRLFS 270 (610)
T ss_pred ----------hhhhhccCceeecCcchHHHHHHHHHHhCCceeeeec-CCeeeEEeeHHHHHHhhC
Confidence 4455999999999999999999999999999999995 899999999999998765
No 166
>cd04610 CBS_pair_ParBc_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a ParBc (ParB-like nuclease) domain downstream. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.05 E-value=4e-09 Score=88.24 Aligned_cols=105 Identities=22% Similarity=0.424 Sum_probs=87.8
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++++++.++.++.+|++.|.+++...+||++ + + +++|+++..+++.. . ...++.++
T Consensus 2 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~v~d---~-~---~~~g~v~~~~l~~~---~----------~~~~~~~~---- 57 (107)
T cd04610 2 RDVITVSPDNTVKDVIKLIKETGHDGFPVVD---N-G---KVVGIVSARDLLGK---D----------PDETVEEI---- 57 (107)
T ss_pred CCcEEECCCCcHHHHHHHHHHcCCCeeeEeE---C-C---EEEEEEEHHHhhcc---C----------ccccHHHh----
Confidence 5678899999999999999988888999994 2 4 89999999999741 0 01223333
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|...+.++.+++++.++++.|.+++...+||++++|+++|+++..|+++
T Consensus 58 --------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vv~~~g~~~Gvi~~~di~~ 106 (107)
T cd04610 58 --------MSKDLVVAVPEMDIMDAARVMFRTGISKLPVVDENNNLVGIITNTDVIR 106 (107)
T ss_pred --------CCCCCeEECCCCCHHHHHHHHHHhCCCeEeEECCCCeEEEEEEHHHhhc
Confidence 6677889999999999999999999999999999999999999999874
No 167
>cd04584 CBS_pair_ACT_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the acetoin utilization proteins in bacteria. Acetoin is a product of fermentative metabolism in many prokaryotic and eukaryotic microorganisms. They produce acetoin as an external carbon storage compound and then later reuse it as a carbon and energy source during their stationary phase and sporulation. In addition these CBS domains are associated with a downstream ACT domain, which is linked to a wide range of metabolic enzymes that are regulated by amino acid concentration. Pairs of ACT domains bind specifically to a particular amino acid leading to regulation of the linked enzyme. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The in
Probab=99.04 E-value=3.6e-09 Score=90.64 Aligned_cols=119 Identities=15% Similarity=0.282 Sum_probs=90.1
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.+++++.+|++.|.+.+.+.+||++ .+ + +++|+++..++++.....+.... ..+. ....
T Consensus 2 ~~~~~~~~~~l~~a~~~~~~~~~~~~~V~d--~~-~---~~~G~v~~~~l~~~~~~~~~~~~---------~~~~-~~~~ 65 (121)
T cd04584 2 DVVTITPTTTIAEALELMREHKIRHLPVVD--EE-G---RLVGIVTDRDLRDASPSPFTTLS---------EHEL-YLLL 65 (121)
T ss_pred CCEEECCCCCHHHHHHHHHHcCCCcccEEC--CC-C---cEEEEEEHHHHHHHhhhhcccch---------hhhh-hhhc
Confidence 567889999999999999999999999995 33 4 79999999999876543211100 0000 0000
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
...+.++|..++.++.+++++.++++.|.+.+...+||+++ |+++|+++.+|+++
T Consensus 66 ~~~v~~~~~~~~~~i~~~~~l~~~~~~~~~~~~~~~~V~~~-~~~~Gvv~~~di~~ 120 (121)
T cd04584 66 KMPVKEIMTKDVITVHPLDTVEEAALLMREHRIGCLPVVED-GRLVGIITETDLLR 120 (121)
T ss_pred CcCHHHHhhCCCeEECCCCcHHHHHHHHHHcCCCeEEEeeC-CEEEEEEEHHHhhc
Confidence 11233347778899999999999999999999999999986 99999999999864
No 168
>PTZ00314 inosine-5'-monophosphate dehydrogenase; Provisional
Probab=99.03 E-value=3.1e-09 Score=113.17 Aligned_cols=115 Identities=23% Similarity=0.280 Sum_probs=95.2
Q ss_pred cCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCcccccc
Q 010368 286 AFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIP 365 (512)
Q Consensus 286 ~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ 365 (512)
.+..+++++.+++++.+|+++|.+++++.+||++.+..++ +++|+++.+|+.. .. ....++.++
T Consensus 101 g~i~dpvtv~pd~tv~eA~~lm~~~~~s~vpVvd~~~~~g---kLvGIVt~~DL~~-~~-----------~~~~~V~di- 164 (495)
T PTZ00314 101 GFIMDPYVLSPNHTVADVLEIKEKKGFSSILITVDGKVGG---KLLGIVTSRDIDF-VK-----------DKSTPVSEV- 164 (495)
T ss_pred ccccCCeecCCCCCHHHHHHHHHHcCCcEEEEEeCCccCC---eEEEEEEHHHHhh-cc-----------cCCCCHHHh-
Confidence 3567889999999999999999999999999996322235 8999999999962 11 012334444
Q ss_pred CcccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 010368 366 VGTWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 427 (512)
Q Consensus 366 ig~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~ 427 (512)
|.+ +++++.++.++.+|+++|.+++...+||+|++++++|+||++||++..
T Consensus 165 -----------Mt~~~~lvtv~~~~sl~eAl~lm~e~~i~~LPVVd~~g~liGIIT~~DIl~~~ 217 (495)
T PTZ00314 165 -----------MTPREKLVVGNTPISLEEANEVLRESRKGKLPIVNDNGELVALVSRSDLKKNR 217 (495)
T ss_pred -----------hCCcCCceEeCCCCCHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEehHhhhcc
Confidence 776 789999999999999999999999999999999999999999998753
No 169
>cd04634 CBS_pair_21 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=99.03 E-value=3.5e-09 Score=94.26 Aligned_cols=127 Identities=27% Similarity=0.483 Sum_probs=94.8
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcc-cC---CCCcccccCccccc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFR-HC---SSSLPILKLPICAI 364 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~-~~---~~~~~~l~~~v~~l 364 (512)
++++++.+++++.+|++.|.+++++.+||++ . + +++|+++..++++++..... .. +........++.++
T Consensus 1 ~~~~~v~~~~~~~~~~~~~~~~~~~~~~Vvd--~--~---~~~G~v~~~dl~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 73 (143)
T cd04634 1 KNPITCNADDTISDAARLLRENKISGAPVLD--G--G---KLVGIVSESDILKLLVTHDPSGNLWLPSPLELIELPLREF 73 (143)
T ss_pred CCcEEecCCCCHHHHHHHHHHcCCCcceEeE--C--C---eEEEEecHHHHHHHHHhccCccccccCCcceeeeccchhe
Confidence 3578899999999999999999999999995 2 4 89999999999987754321 00 00001111122111
Q ss_pred cCccc-----------ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 365 PVGTW-----------VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 365 ~ig~~-----------~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
..| ...+.++|..++.++.+++++.++++.|.+.+.+.+||+++ ++++|+++.+|++.
T Consensus 74 --~~~~~~~~~~~~~~~~~v~~~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~~-~~~~Gvvt~~dl~~ 142 (143)
T cd04634 74 --INWEETKRALTDAGKMKVRDIMTKKVITISPDASIEDAAELMVRHKIKRLPVVED-GRLVGIVTRGDIIE 142 (143)
T ss_pred --eehHHHHHHHHHHhcCCHHHHcCCCCeEECCCCcHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 111 11345567788999999999999999999999999999987 89999999999863
No 170
>cd04606 CBS_pair_Mg_transporter This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domain in the magnesium transporter, MgtE. MgtE and its homologs are found in eubacteria, archaebacteria, and eukaryota. Members of this family transport Mg2+ or other divalent cations into the cell via two highly conserved aspartates. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=99.03 E-value=3.7e-09 Score=89.11 Aligned_cols=102 Identities=15% Similarity=0.293 Sum_probs=83.1
Q ss_pred eCCCCCHHHHHHHHHhCC-----CceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 294 AGPNDNLKDVARKILHNE-----VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 294 v~~~~sl~da~~~m~~~~-----i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
+.+++++.++++.|.+++ +..+||++ .+ | +++|+++.+++++. . ...++.
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~vvd--~~-~---~~~G~v~~~~l~~~------~-------~~~~v~------ 56 (109)
T cd04606 2 VREDWTVGEALEYLRRNADDPETIYYIYVVD--EE-G---RLLGVVSLRDLLLA------D-------PDTPVS------ 56 (109)
T ss_pred ccccCcHHHHHHHHHhccCcccceeEEEEEC--CC-C---CEEEEEEHHHHhcC------C-------CcchHH------
Confidence 578999999999998877 47899994 33 4 79999999998641 0 012233
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 426 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~ 426 (512)
++|..++..+.+++++.++++.|...+...+||+|++|+++|+++..|+++.
T Consensus 57 ------~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~Vv~~~~~~~Gvit~~dll~~ 108 (109)
T cd04606 57 ------DIMDTDVISVSADDDQEEVARLFEKYDLLALPVVDEEGRLVGIITVDDVIDV 108 (109)
T ss_pred ------HHhCCCCeEEcCCCCHHHHHHHHHHcCCceeeeECCCCcEEEEEEhHHhhhh
Confidence 3366778899999999999999999999999999988999999999999864
No 171
>TIGR01302 IMP_dehydrog inosine-5'-monophosphate dehydrogenase. This model describes a rather tightly conserved cluster of IMP dehydrogenase sequences, many of which are characterized. The model excludes two related families of proteins proposed also to be IMP dehydrogenases, but without characterized members. These are related families are the subject of separate models.
Probab=99.02 E-value=2.9e-09 Score=112.67 Aligned_cols=164 Identities=18% Similarity=0.297 Sum_probs=116.4
Q ss_pred cEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCC---CCCChhhHhhhhHHHHHHhhhhhccccCCCCCcCCCCceEeCCC
Q 010368 221 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 297 (512)
Q Consensus 221 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~ 297 (512)
..+|+..+. ..-+|..++..++......+ .+++.++-. +.++.++. + ...+.++++++.++
T Consensus 33 l~~p~~s~~----mdtvTe~ema~~ma~~gg~GvI~~n~~~e~q~----~~V~~Vk~---~-----~~~~~~~~vtl~~~ 96 (450)
T TIGR01302 33 LNIPILSSP----MDTVTESRMAIAMAREGGIGVIHRNMSIEEQA----EQVKRVKR---A-----ENGIISDPVTISPE 96 (450)
T ss_pred cCCCeeecC----CCccCHHHHHHHHHhcCCCceeecCCCHHHHH----HHHhhhcc---c-----cCceecCceEeCCC
Confidence 346777543 34568888887776544321 122211111 11111111 1 22467789999999
Q ss_pred CCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCC
Q 010368 298 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 377 (512)
Q Consensus 298 ~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m 377 (512)
+++.+|+++|.+++++++||++.+...+ +++|+++.+|++... . ...++.++ |
T Consensus 97 ~tv~eal~~m~~~~~s~lpVvd~~~~~~---~lvGIVt~rDL~~~~-----~-------~~~~V~dv------------m 149 (450)
T TIGR01302 97 TTVADVLELMERKGISGIPVVEDGDMTG---KLVGIITKRDIRFVK-----D-------KGKPVSEV------------M 149 (450)
T ss_pred CCHHHHHHHHHHcCCCEEEEEeCCCCCC---eEEEEEEHHHHhhhh-----c-------CCCCHHHh------------h
Confidence 9999999999999999999996321114 899999999996321 0 12234444 7
Q ss_pred C-CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 010368 378 R-RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 427 (512)
Q Consensus 378 ~-~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~ 427 (512)
. .+++++.+++++.++++.|.+++.+.+||+|++|+++|+||++||++..
T Consensus 150 ~~~~~~~V~~~~sl~eal~~m~~~~~~~lpVVDe~G~lvGiVT~~DIl~~~ 200 (450)
T TIGR01302 150 TREEVITVPEGIDLEEALKVLHEHRIEKLPVVDKNGELVGLITMKDIVKRR 200 (450)
T ss_pred CCCCCEEECCCCcHHHHHHHHHHcCCCeEEEEcCCCcEEEEEEhHHhhhcc
Confidence 7 4889999999999999999999999999999999999999999999764
No 172
>PRK01862 putative voltage-gated ClC-type chloride channel ClcB; Provisional
Probab=99.01 E-value=4.5e-09 Score=115.06 Aligned_cols=119 Identities=15% Similarity=0.265 Sum_probs=97.0
Q ss_pred CcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccc
Q 010368 285 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAI 364 (512)
Q Consensus 285 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l 364 (512)
.+|.+++.++++++++.++++.|.+++.+.+||+| ++ + +++|+++.+|+.+.+..... ....++
T Consensus 451 dim~~~~~~v~~~~tl~ea~~~l~~~~~~~~~VvD--~~-g---~lvGiVt~~dL~~~l~~~~~-------~~~~~v--- 514 (574)
T PRK01862 451 ELIQPAQTVVPPTASVADMTRVFLEYPVKYLYVVD--DD-G---RFRGAVALKDITSDLLDKRD-------TTDKTA--- 514 (574)
T ss_pred HHhcCCCceeCCCCCHHHHHHHHHhCCCceEEEEc--CC-C---eEEEEEEHHHHHHHhhcccc-------cccchH---
Confidence 35778889999999999999999999999999995 33 4 79999999999875532100 001223
Q ss_pred cCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC--CcEEEEEeHHHHHHHHh
Q 010368 365 PVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN--DSLLDIYCRSDITALAK 428 (512)
Q Consensus 365 ~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~--g~liGivs~~Di~~~~~ 428 (512)
.++|.+++.++.+++++.+|+++|.+++.+.+||+|++ ++++|+||++|+++...
T Consensus 515 ---------~dim~~~~~~v~~d~~L~~al~~m~~~~~~~lpVVd~~~~~~liGvIt~~DIl~~l~ 571 (574)
T PRK01862 515 ---------ADYAHTPFPLLTPDMPLGDALEHFMAFQGERLPVVESEASPTLAGVVYKTSLLDAYR 571 (574)
T ss_pred ---------HHhccCCCeeECCCCCHHHHHHHHHhcCCCeeeeEeCCCCCeEEEEEEHHHHHHHHH
Confidence 34488888999999999999999999999999999876 58999999999998654
No 173
>cd04594 CBS_pair_EriC_assoc_archaea This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with the EriC CIC-type chloride channels in archaea. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS do
Probab=99.01 E-value=5.1e-09 Score=87.56 Aligned_cols=100 Identities=15% Similarity=0.268 Sum_probs=84.0
Q ss_pred eEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccccc
Q 010368 292 VYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVP 371 (512)
Q Consensus 292 i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~ 371 (512)
+++.+++++.+|++.|.+.+...+||++ . + +++|+++..++++.. ..++.+
T Consensus 4 ~~v~~~~~~~~~~~~~~~~~~~~~~V~d--~--~---~~~G~v~~~~l~~~~--------------~~~~~~-------- 54 (104)
T cd04594 4 IKVKDYDKVYEAKRIMIENDLLSLPVVD--Y--N---KFLGAVYLKDIENAT--------------YGDVVD-------- 54 (104)
T ss_pred eEECCCCCHHHHHHHHHHcCCcEEEEEE--C--C---EEEEEEEHHHHhhhc--------------ccchhh--------
Confidence 5678999999999999999999999995 2 4 899999999997521 011222
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 372 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 372 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+|...+.++.++.++.++++.|.+++...+||++ +|+++|+++.+|++.
T Consensus 55 ----~~~~~~~~v~~~~~l~~a~~~~~~~~~~~~~Vv~-~~~~iGvit~~dl~~ 103 (104)
T cd04594 55 ----YIVRGIPYVRLTSTAEEAWEVMMKNKTRWCPVVD-DGKFKGIVTLDSILD 103 (104)
T ss_pred ----hhhcCCcEEcCCCCHHHHHHHHHHcCcceEEEEE-CCEEEEEEEHHHhhc
Confidence 2666788999999999999999999999999998 689999999999864
No 174
>cd04591 CBS_pair_EriC_assoc_euk_bac This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes and bacteria. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS
Probab=99.01 E-value=5.5e-09 Score=87.84 Aligned_cols=100 Identities=16% Similarity=0.205 Sum_probs=85.7
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCC--CCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQ--DGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 367 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~--~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig 367 (512)
....+.+++++.++.+.|.+.+...+||++ .. +| +++|+++..++.+....
T Consensus 3 ~~~~~~~~~~~~~~~~~~~~~~~~~~~V~~--~~~~~~---~~~G~v~~~dl~~~~~~---------------------- 55 (105)
T cd04591 3 LVVLLPEGMTVEDLESLLSTTSHNGFPVVD--STEESP---RLVGYILRSQLVVALKN---------------------- 55 (105)
T ss_pred ceEEecccccHHHHHHHHHhCCCCCcceEc--CCCCCC---EEEEEEeHHHHHHHHHH----------------------
Confidence 467789999999999999999999999994 32 34 89999999999765432
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 368 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 368 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+|..++.++.+++++.++++.|.+++.+.+||++ +|+++|+++++|+++
T Consensus 56 --------~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~pVv~-~~~~~Gvvt~~dl~~ 104 (105)
T cd04591 56 --------YIDPSPFTVSPRTSLEKVHQLFRKLGLRHLLVVD-EGRLVGIITRKDLLK 104 (105)
T ss_pred --------hccCCCceECCCCcHHHHHHHHHHcCCCEEEEEE-CCeEEEEEEhhhhhc
Confidence 1556778999999999999999999999999994 789999999999875
No 175
>TIGR00393 kpsF KpsF/GutQ family protein. This model describes a number of closely related proteins with the phosphosugar-binding domain SIS (Sugar ISomerase) followed by two copies of the CBS (named after Cystathionine Beta Synthase) domain. One is GutQ, a protein of the glucitol operon. Another is KpsF, a virulence factor involved in capsular polysialic acid biosynthesis in some pathogenic strains of E. coli.
Probab=98.99 E-value=2.7e-09 Score=105.50 Aligned_cols=110 Identities=16% Similarity=0.225 Sum_probs=91.0
Q ss_pred CCcCCCC-ceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccc
Q 010368 284 GKAFPRP-LVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPIC 362 (512)
Q Consensus 284 g~~~~~~-~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~ 362 (512)
+.+|.++ +..+.+++++.+|++.|.+.+++.+||++ ++ | +++|+++..|+++.+.... ....+++
T Consensus 158 ~~im~~~~~~~v~~~~~v~~a~~~~~~~~~~~~~Vvd--~~-g---~~~Givt~~dl~~~~~~~~--------~~~~~v~ 223 (268)
T TIGR00393 158 KDLMQTTDLPLIAPTTSFKDALLEMSEKRLGSAIVCD--EN-N---QLVGVFTDGDLRRALLGGG--------SLKSEVR 223 (268)
T ss_pred HHHhCCCCCCcCCCCCcHHHHHHHHhhcCCcEEEEEe--CC-C---CEEEEEEcHHHHHHHhcCC--------cccCcHH
Confidence 3457777 99999999999999999999999999995 33 4 7999999999987543210 1123344
Q ss_pred cccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEe
Q 010368 363 AIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 419 (512)
Q Consensus 363 ~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs 419 (512)
++ |.+++.++.+++++.+|+++|.+++...+||+|++|+++|+|+
T Consensus 224 ~i------------m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~l~GvI~ 268 (268)
T TIGR00393 224 DF------------MTLGPKTFKLDALLLEALEFLERRKITSLVVVDDHNKVLGVLH 268 (268)
T ss_pred Hh------------CCCCCeEECCCCcHHHHHHHHHHcCCcEEEEECCCCeEEEEEC
Confidence 44 8888899999999999999999999999999998899999985
No 176
>cd04598 CBS_pair_GGDEF_assoc This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in association with the GGDEF (DiGuanylate-Cyclase (DGC)) domain. The GGDEF domain has been suggested to be homologous to the adenylyl cyclase catalytic domain and is thought to be involved in regulating cell surface adhesiveness in bacteria. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=98.97 E-value=6.2e-09 Score=88.98 Aligned_cols=113 Identities=12% Similarity=0.194 Sum_probs=87.0
Q ss_pred CceEeCCCCCHHHHHHHHHhCC-CceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 290 PLVYAGPNDNLKDVARKILHNE-VATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~-i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
++.++.+++++.+|++.|...+ .+.+||++ . | +++|+++..++++++...+... .....
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~Vvd--~--~---~~~G~v~~~~l~~~~~~~~~~~----~~~~~--------- 61 (119)
T cd04598 2 PAPTVSPDTTVNDVLERFERDPDLSALAVVD--D--G---RPVGLIMREALMELLSTPYGRA----LYGKK--------- 61 (119)
T ss_pred CcCccCCCCcHHHHHHHHHhCCCccEEEEEE--C--C---eeEEEEEHHHHHHHHhchhhHH----HHcCC---------
Confidence 4667899999999999998877 89999995 3 4 8999999999987654321000 00011
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCC---EEEEECCCCcEEEEEeHHHHHH
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVS---SIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~---~lpVvd~~g~liGivs~~Di~~ 425 (512)
.++++|..++..+.+++++.++++.|.+++.. ..+|++++|+++|+|+..|++.
T Consensus 62 ---~v~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~vv~~~~~~~Gvvs~~di~~ 118 (119)
T cd04598 62 ---PVSEVMDPDPLIVEADTPLEEVSRLATGRDSQNLYDGFIVTEEGRYLGIGTVKDLLR 118 (119)
T ss_pred ---cHHHhcCCCcEEecCCCCHHHHHHHHHcCCcccccccEEEeeCCeEEEEEEHHHHhc
Confidence 23344888899999999999999999888753 4468888899999999999864
No 177
>COG2239 MgtE Mg/Co/Ni transporter MgtE (contains CBS domain) [Inorganic ion transport and metabolism]
Probab=98.93 E-value=5.3e-09 Score=108.96 Aligned_cols=116 Identities=16% Similarity=0.296 Sum_probs=101.6
Q ss_pred cccCCCCCCCceeecCCCCHHHHHHHHHh-----cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHH
Q 010368 371 PKIGEPNRRPLAMLRPSASLSAALNLLVQ-----AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA 445 (512)
Q Consensus 371 ~~v~~~m~~~~~~v~~~~~l~~a~~~m~~-----~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~ 445 (512)
..+|.+|...++++.++.|+.+++..+++ .....+.|+|+++++.|+++.++++.... +..+.++
T Consensus 132 ~taG~~Mt~e~v~l~~~~Tv~~al~~ir~~~~~~e~~~~lyVvD~~~~L~Gvvsl~~Ll~a~~----------~~~i~~i 201 (451)
T COG2239 132 DTAGRIMTTEFVTLPEDVTVDEALDRIRERAEDAETIYYLYVVDEKGKLLGVVSLRDLLTAEP----------DELLKDL 201 (451)
T ss_pred hhhhccceeeeEEeccCcCHHHHHHHHHHhcccccccceEEEECCccceEEEeeHHHHhcCCc----------HhHHHHH
Confidence 35677799999999999999999999984 35688999999999999999999875321 2477777
Q ss_pred HhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 446 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
| .+.++++.+++..+++.+.+.+++.-.+||||+ +++++|+||..|++..+
T Consensus 202 m-------------~~~~~~V~~~~dqeevA~~~~~ydl~a~PVVd~-~~~LiG~itiDDiidvi 252 (451)
T COG2239 202 M-------------EDDVVSVLADDDQEEVARLFEKYDLLAVPVVDE-DNRLIGIITIDDIIDVI 252 (451)
T ss_pred h-------------cccceeecccCCHHHHHHHHHHhCCeecceECC-CCceeeeeeHHHHHHHH
Confidence 7 567999999999999999999999999999996 99999999999998765
No 178
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.92 E-value=1.5e-08 Score=106.84 Aligned_cols=117 Identities=20% Similarity=0.322 Sum_probs=98.3
Q ss_pred CCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEEC-CCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCC
Q 010368 375 EPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVD-DNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQD 451 (512)
Q Consensus 375 ~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd-~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~ 451 (512)
++|. .++..+..+.++.++.+.+.+.+++++||++ +.+.++|++..+|++....++.. . ......
T Consensus 210 eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~~~-~-----~~~~~~------ 277 (429)
T COG1253 210 EIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDGQS-D-----LDLRVL------ 277 (429)
T ss_pred eEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcCcc-c-----cchhhc------
Confidence 3364 5788999999999999999999999999998 56789999999999987655421 0 111111
Q ss_pred CCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 452 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 452 ~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
-.++..+++.+++.++++.|.+.+.|-..|+|+ .|.+.|+||+.||+..++|
T Consensus 278 --------~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvDE-yG~~~GlVTleDIiEeIvG 329 (429)
T COG1253 278 --------VRPPLFVPETLSLSDLLEEFREERTHMAIVVDE-YGGVEGLVTLEDIIEEIVG 329 (429)
T ss_pred --------ccCCeEecCCCcHHHHHHHHHHhCCeEEEEEEc-CCCeEEEeEHHHHHHHHhC
Confidence 237899999999999999999999999999996 9999999999999999986
No 179
>COG4109 Predicted transcriptional regulator containing CBS domains [Transcription]
Probab=98.89 E-value=5.8e-08 Score=95.07 Aligned_cols=109 Identities=16% Similarity=0.310 Sum_probs=94.6
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
.....+.+++++.+-.++..+.+.+++||+| ... +++|++|.+|++.. ..+.++...
T Consensus 198 ~~~~yL~~~d~v~d~~~l~~kt~~sRfPVvn--~~~----kvvGvVt~rDv~~~-------------~~~t~ieKV---- 254 (432)
T COG4109 198 EDTSYLRETDTVEDWLDLVEKTGHSRFPVVN--RSM----KVVGVVTMRDVLDK-------------KPSTTIEKV---- 254 (432)
T ss_pred ccceeccccccHHHHHHHHHHcCCCccceec--ccc----eEEEEEEehhhhcC-------------CCCccHHHH----
Confidence 6788899999999999999999999999994 344 89999999999631 113334433
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 428 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~ 428 (512)
|.++++++.+.+++..+.++|.-.++.-+||+|++.+++|+||++|+++.+.
T Consensus 255 --------Mtknp~tv~~~tsVAsvaq~MiwE~iem~PVv~~n~~llGiitR~dvlk~lq 306 (432)
T COG4109 255 --------MTKNPITVRAKTSVASVAQMMIWEGIEMLPVVDSNNTLLGIITRQDVLKSLQ 306 (432)
T ss_pred --------hccCCeeecccchHHHHHHHHHhccceeeeEEcCCceEEEEEEHHHHHHHHH
Confidence 9999999999999999999999999999999999999999999999998654
No 180
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.86 E-value=6.3e-09 Score=77.08 Aligned_cols=54 Identities=30% Similarity=0.506 Sum_probs=50.5
Q ss_pred ccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 458 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 458 ~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
+|.++++++.+++++.+|++.|.+++++++||+|+ +|+++|+||.+||++++++
T Consensus 4 ~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~-~~~~~G~is~~dl~~~l~~ 57 (57)
T PF00571_consen 4 IMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDE-DGKLVGIISRSDLLKALLD 57 (57)
T ss_dssp HSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEEST-TSBEEEEEEHHHHHHHHHG
T ss_pred CCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEec-CCEEEEEEEHHHHHhhhhC
Confidence 45779999999999999999999999999999996 8999999999999999864
No 181
>cd04638 CBS_pair_25 The CBS domain, named after human CBS, is a small domain originally identified in cystathionine beta-synthase and is subsequently found in a wide range of different proteins. CBS domains usually occur in tandem repeats. They associate to form a so-called Bateman domain or a CBS pair based on crystallographic studies in bacteria. The CBS pair was used as a basis for this cd hierarchy since the human CBS proteins can adopt the typical core structure and form an intramolecular CBS pair. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains and this has been used to help in its classification here. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown. Mutations of conserved residues within this domain are associated with a variety of human hereditary diseases, including congenital myotonia, idiopathic gener
Probab=98.86 E-value=3.9e-08 Score=82.23 Aligned_cols=104 Identities=23% Similarity=0.416 Sum_probs=84.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTW 369 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~ 369 (512)
++.++.++.++.+++..|.+.+.+.+||++ .+ + +++|+++..++++.. . ..++.++
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~~-~---~~~g~v~~~~l~~~~----~---------~~~~~~~----- 57 (106)
T cd04638 2 NVVYVTLPGTRDDVLELLKEYKVSGVPVVK--KS-G---ELVGIITRKDLLRNP----E---------EEQLALL----- 57 (106)
T ss_pred CcEEECCCCCHHHHHHHHHHcCCCeEEEEc--CC-C---cEEEEEEHHHHHhcc----c---------cchHHHH-----
Confidence 467889999999999999999999999994 33 4 799999999997410 0 1112222
Q ss_pred ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 370 VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 370 ~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
|..++.++.+++++.++++.|.+.+...+||+|+ |+++|+++..|++.
T Consensus 58 -------~~~~~~~v~~~~~l~~~~~~~~~~~~~~~~Vvd~-~~~~G~it~~d~~~ 105 (106)
T cd04638 58 -------MTRDPPTVSPDDDVKEAAKLMVENNIRRVPVVDD-GKLVGIVTVADIVR 105 (106)
T ss_pred -------hcCCCceECCCCCHHHHHHHHHHcCCCEEEEEEC-CEEEEEEEHHHhhc
Confidence 5667888999999999999999999999999984 79999999999864
No 182
>PRK11573 hypothetical protein; Provisional
Probab=98.84 E-value=9.2e-08 Score=100.02 Aligned_cols=165 Identities=13% Similarity=0.158 Sum_probs=123.0
Q ss_pred hhCcccccCCCCCcEEEEeCCCCHHHHHHHHHHcCCcEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCCCCCChhhHhhh
Q 010368 185 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 264 (512)
Q Consensus 185 ~~~~~yd~~p~s~kvv~ld~~~~v~~A~~~l~e~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~~~~~~l~~~ 264 (512)
++.++.|+|-.-.+++.++.+.|+.++++.+.+.+.++.||++.+..+++|++...|++..+. .. ...
T Consensus 185 ~~~~v~eiMtPr~~i~~l~~~~~~~e~~~~~~~~~~SR~PVy~~~~D~IiGiv~~kDll~~~~---~~-~~~-------- 252 (413)
T PRK11573 185 EKVTVDDIMVPRNEIVGIDINDDWKSILRQLTHSPHGRIVLYRDSLDDAISMLRVREAYRLMT---EK-KEF-------- 252 (413)
T ss_pred CCCChhhcCCccceEEEEECCCCHHHHHHHHHhCCCceEEEEcCCCCceEEEEEHHHHHHHhh---cc-CcC--------
Confidence 578899999888999999999999999999999999999999987789999999999986442 11 111
Q ss_pred hHHHHHHhhhhhccccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHH
Q 010368 265 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 344 (512)
Q Consensus 265 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~ 344 (512)
....+.+ ..+++..|+++.++.++++.|.+++.+-..|+| +-| ...|+||..||+..+.
T Consensus 253 ~~~~l~~---------------~~r~~~~Vpe~~~l~~lL~~~~~~~~~~AiVvD---EyG---~~~GiVTleDilEeiv 311 (413)
T PRK11573 253 TKENMLR---------------AADEIYFVPEGTPLSTQLVKFQRNKKKVGLVVD---EYG---DIQGLVTVEDILEEIV 311 (413)
T ss_pred CHHHHHh---------------hccCCeEeCCCCcHHHHHHHHHhcCCeEEEEEe---cCC---CeEEEeeHHHHHHHHh
Confidence 1111111 136788999999999999999999999999995 334 5899999999999988
Q ss_pred hhcccCCCCcccccCccccccCcccccccCCCCCCCceeecCCCCHHHHHHHH
Q 010368 345 RYFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLL 397 (512)
Q Consensus 345 ~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m 397 (512)
....+... ......+..+ ......+....++.++-+.+
T Consensus 312 Gei~de~d--~~~~~~i~~~-------------~~~~~~v~G~~~l~d~~~~l 349 (413)
T PRK11573 312 GDFTTSMS--PTLAEEVTPQ-------------NDGSVIIDGTANVREINKAF 349 (413)
T ss_pred CCCCcccC--cccccceEEe-------------cCCEEEEEeeeEHHHHHHHh
Confidence 76544211 0000112222 12334577778888877776
No 183
>TIGR01137 cysta_beta cystathionine beta-synthase. Members of this family closely resemble cysteine synthase but contain an additional C-terminal CBS domain. The function of any bacterial member included in this family is proposed but not proven.
Probab=98.81 E-value=3.4e-08 Score=105.21 Aligned_cols=116 Identities=12% Similarity=0.190 Sum_probs=91.3
Q ss_pred CCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCcccc
Q 010368 284 GKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICA 363 (512)
Q Consensus 284 g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~ 363 (512)
+.+|.+++.++.+++++.+|++.|.+++++.+||+| .+ + +++|+++..|+++.+..... ....++.+
T Consensus 338 ~~im~~~~~~v~~~~tl~ea~~~m~~~~~~~~~Vvd--~~-~---~~~Givt~~dl~~~~~~~~~-------~~~~~v~~ 404 (454)
T TIGR01137 338 KDLHLPAPVTVHPTETVGDAIEILREYGFDQLPVVT--EA-G---KVLGSVTLRELLSALFAGKA-------NPDDAVSK 404 (454)
T ss_pred HHhCcCCCeEECCCCcHHHHHHHHHHcCCCEEEEEc--CC-C---eEEEEEEHHHHHHHHhccCC-------CcCCCHHH
Confidence 345788999999999999999999999999999994 23 4 79999999999886643110 11223444
Q ss_pred ccCcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 010368 364 IPVGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 427 (512)
Q Consensus 364 l~ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~ 427 (512)
+ |..++.++.+++++.+++++|.+++ .++|+++++++|+||++||+..+
T Consensus 405 i------------m~~~~~~v~~~~~l~~a~~~~~~~~---~~vV~~~g~liGvvt~~dll~~l 453 (454)
T TIGR01137 405 V------------MSKKFIQIGEGEKLSDLSKFLEKNS---SAIVTEEGKPIGVVTKIDLLSFL 453 (454)
T ss_pred h------------cCCCCeEECCcCcHHHHHHHHHHCC---eeEEEECCEEEEEEEHHHHHHhh
Confidence 3 7778889999999999999998754 34555579999999999998753
No 184
>cd04592 CBS_pair_EriC_assoc_euk This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains in the EriC CIC-type chloride channels in eukaryotes. These ion channels are proteins with a seemingly simple task of allowing the passive flow of chloride ions across biological membranes. CIC-type chloride channels come from all kingdoms of life, have several gene families, and can be gated by voltage. The members of the CIC-type chloride channel are double-barreled: two proteins forming homodimers at a broad interface formed by four helices from each protein. The two pores are not found at this interface, but are completely contained within each subunit, as deduced from the mutational analyses, unlike many other channels, in which four or five identical or structurally related subunits jointly form one pore. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually
Probab=98.80 E-value=4.7e-08 Score=86.07 Aligned_cols=113 Identities=16% Similarity=0.172 Sum_probs=78.8
Q ss_pred CceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCc-cccc---Ccccccc
Q 010368 290 PLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSL-PILK---LPICAIP 365 (512)
Q Consensus 290 ~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~-~~l~---~~v~~l~ 365 (512)
+++++.+++++.+|++.|.++++..+||+| ++ | +++|+++..|+++++........... ..+. ..+.++.
T Consensus 2 ~~~~v~~~~~l~ea~~~m~~~~~~~~~VvD--~~-g---~l~Givt~~Dl~~~~~~~~~~~~~~~~~~~~~~~~~v~~i~ 75 (133)
T cd04592 2 KYIKVSPTTTLKEALNLMLDEKQSCVLVVD--SD-D---FLEGILTLGDIQRFLFTNKTTRVQPEDETKQTNTCLVSSVC 75 (133)
T ss_pred CceEECCCCCHHHHHHHHHHcCCCEEEEEC--CC-C---eEEEEEEHHHHHHHHhhccccccccchhhcccccccHHHHh
Confidence 578899999999999999999999999994 33 4 79999999999988764311100000 0000 0011110
Q ss_pred CcccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC
Q 010368 366 VGTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN 411 (512)
Q Consensus 366 ig~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~ 411 (512)
. ...+.+.|..+++++.+++++.+|+++|.+++++++||+|++
T Consensus 76 ~---~~~~~~~~~~~~~~v~~~~~l~ea~~~m~~~~~~~lPVvd~~ 118 (133)
T cd04592 76 T---KGISYGGQECGLWTCTPDTDLTTAKKLMEAKGVKQLPVVKRG 118 (133)
T ss_pred h---hhhhhcccCCCCEEECCCCCHHHHHHHHHHcCCCcCCEecCC
Confidence 0 000112245678899999999999999999999999999864
No 185
>PF00571 CBS: CBS domain CBS domain web page. Mutations in the CBS domain of Swiss:P35520 lead to homocystinuria.; InterPro: IPR000644 CBS (cystathionine-beta-synthase) domains are small intracellular modules, mostly found in two or four copies within a protein, that occur in a variety of proteins in bacteria, archaea, and eukaryotes [, ]. Tandem pairs of CBS domains can act as binding domains for adenosine derivatives and may regulate the activity of attached enzymatic or other domains []. In some cases, CBS domains may act as sensors of cellular energy status by being activated by AMP and inhibited by ATP []. In chloride ion channels, the CBS domains have been implicated in intracellular targeting and trafficking, as well as in protein-protein interactions, but results vary with different channels: in the CLC-5 channel, the CBS domain was shown to be required for trafficking [], while in the CLC-1 channel, the CBS domain was shown to be critical for channel function, but not necessary for trafficking []. Recent experiments revealing that CBS domains can bind adenosine-containing ligands such ATP, AMP, or S-adenosylmethionine have led to the hypothesis that CBS domains function as sensors of intracellular metabolites [, ]. Crystallographic studies of CBS domains have shown that pairs of CBS sequences form a globular domain where each CBS unit adopts a beta-alpha-beta-beta-alpha pattern []. Crystal structure of the CBS domains of the AMP-activated protein kinase in complexes with AMP and ATP shows that the phosphate groups of AMP/ATP lie in a surface pocket at the interface of two CBS domains, which is lined with basic residues, many of which are associated with disease-causing mutations []. In humans, mutations in conserved residues within CBS domains cause a variety of human hereditary diseases, including (with the gene mutated in parentheses): homocystinuria (cystathionine beta-synthase); Wolff-Parkinson-White syndrome (gamma 2 subunit of AMP-activated protein kinase); retinitis pigmentosa (IMP dehydrogenase-1); congenital myotonia, idiopathic generalized epilepsy, hypercalciuric nephrolithiasis, and classic Bartter syndrome (CLC chloride channel family members).; GO: 0005515 protein binding; PDB: 3JTF_A 3TE5_C 3TDH_C 3T4N_C 2QLV_C 3OI8_A 3LV9_A 2QH1_B 1PVM_B 3LQN_A ....
Probab=98.78 E-value=1.5e-08 Score=75.02 Aligned_cols=55 Identities=29% Similarity=0.507 Sum_probs=50.9
Q ss_pred CCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 010368 374 GEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 428 (512)
Q Consensus 374 ~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~ 428 (512)
+++|.++++++.+++++.++++.|.+++++++||+|++|+++|+++.+||++++.
T Consensus 2 ~~~m~~~~~~v~~~~~l~~~~~~~~~~~~~~~~V~d~~~~~~G~is~~dl~~~l~ 56 (57)
T PF00571_consen 2 GDIMTPPPITVSPDDSLEEALEIMRKNGISRLPVVDEDGKLVGIISRSDLLKALL 56 (57)
T ss_dssp HHHSBSSSEEEETTSBHHHHHHHHHHHTSSEEEEESTTSBEEEEEEHHHHHHHHH
T ss_pred eECCcCCCEEEcCcCcHHHHHHHHHHcCCcEEEEEecCCEEEEEEEHHHHHhhhh
Confidence 3458889999999999999999999999999999999999999999999998653
No 186
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.76 E-value=3.7e-07 Score=93.78 Aligned_cols=109 Identities=17% Similarity=0.282 Sum_probs=92.6
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccc
Q 010368 379 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYEL 458 (512)
Q Consensus 379 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~ 458 (512)
.......++.+..++++.|...+...+.|+|+++++.|.++.+++....... .++.+.+
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~------------ 308 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVDRQNKLVGVVDVESIKQARKKA---------QGLQDVL------------ 308 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEcCCCCEEEEEeHHHHHHHhhcC---------Cchhhhh------------
Confidence 3344566778899999999999999999999999999999999988765432 2455555
Q ss_pred cCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010368 459 RSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 511 (512)
Q Consensus 459 ~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll 511 (512)
.....++.++++|.+++..|..++.. +||||+ +|+++|+||..+|+++|.
T Consensus 309 -~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~i~~~~~~~~~~ 358 (363)
T TIGR01186 309 -IDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDE-DQRLVGIVTRGSLVDALY 358 (363)
T ss_pred -ccCCceECCCCcHHHHHHHHHhCCCC-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 45678899999999999999999998 999996 999999999999999875
No 187
>cd02688 E_set E or "early" set of sugar utilizing enzymes which may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=98.71 E-value=4.7e-08 Score=78.02 Aligned_cols=75 Identities=28% Similarity=0.386 Sum_probs=60.5
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCC-ceEEEEEEECCEEeeCCCCCeeeCCCCCeee
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFCVDGEWRHDEHQPFISSEYGIVNT 103 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~-g~~~ykf~VDg~w~~d~~~~~~~d~~G~~nn 103 (512)
.++|. |..++++|.|.++|++|....+|.+. ..|.|++.+.+.. |.|.|+|.|||.|.+++.++...+.....++
T Consensus 5 ~v~f~v~ap~a~~v~l~~~~~~~~~~~~~~~~--~~g~w~~~v~~~~~~~~~Y~~~v~~~~~~~~~~~~~~~~~~~~~~ 81 (83)
T cd02688 5 GVTFTVRGPKAQRVSLAGSFNGDTQLIPMTKV--EDGYWEVELPLPSPGKYQYKYVLDGGKGPDEGEPKADEGGSGDSV 81 (83)
T ss_pred cEEEEEECCCCCEEEEEEEECCCCCcccCEEC--CCceEEEEEcCCCCCCeEEEEEEeCCCCCCCCChhhhcCCcccce
Confidence 46777 77778999999999997666789764 3599999999998 9999999999999999887665555444433
No 188
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.69 E-value=8.8e-08 Score=94.82 Aligned_cols=121 Identities=15% Similarity=0.263 Sum_probs=100.4
Q ss_pred cCCCCC--CCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcC
Q 010368 373 IGEPNR--RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLG 449 (512)
Q Consensus 373 v~~~m~--~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~ 449 (512)
|.++|. ..+..+..+.+..++.+.+....+.++|+..+ -+.++|++..+|+++++.++.. .+-.++++.
T Consensus 202 V~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~~-------~~k~d~~~~- 273 (423)
T COG4536 202 VSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKNE-------FTKEDILRA- 273 (423)
T ss_pred eeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccCc-------ccHhHHHHH-
Confidence 445564 46788999999999999999999999999943 3469999999999998876531 122333322
Q ss_pred CCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 450 QDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 450 ~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
...+.++++.++|.+-+..|.+++-|.-.|||+ .|.+.|+||+.||+..++|
T Consensus 274 ----------a~epyFVPe~Tpl~~QL~~F~~~k~hialVVDE-YG~i~GLVTLEDIlEEIVG 325 (423)
T COG4536 274 ----------ADEPYFVPEGTPLSDQLVAFQRNKKHIALVVDE-YGDIQGLVTLEDILEEIVG 325 (423)
T ss_pred ----------hcCCeecCCCCcHHHHHHHHHHhcceEEEEEec-cCcEEeeeeHHHHHHHHhc
Confidence 246889999999999999999999999999996 9999999999999999886
No 189
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.67 E-value=6.4e-08 Score=89.83 Aligned_cols=113 Identities=16% Similarity=0.395 Sum_probs=99.2
Q ss_pred CCceeecCCCCHHHHHHHHHhcCCCEEEEECC-CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcc
Q 010368 379 RPLAMLRPSASLSAALNLLVQAQVSSIPIVDD-NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 457 (512)
Q Consensus 379 ~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~-~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 457 (512)
.+.+++..+.++.+++..+.+...+++||+.+ .+.+.|++-.+||+.++..... ...+.+++
T Consensus 77 SQM~~l~~~~~l~~~l~~iiesaHSRfPVi~edkD~v~GIL~AKDLL~~~~~~~~------~F~i~~lL----------- 139 (293)
T COG4535 77 SQMITLKRNQTLDECLDVIIESAHSRFPVISEDKDHVEGILLAKDLLPFMRSDAE------PFDIKELL----------- 139 (293)
T ss_pred HHheeccccCCHHHHHHHHHHhccccCCcccCCchhhhhhhhHHHHHHHhcCCcc------cccHHHhc-----------
Confidence 45788999999999999999999999999965 4589999999999998765421 24667765
Q ss_pred ccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 458 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 458 ~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
++.+.|+++-.+...++-+...+.|...|||+ -|-+-|.||..||+..++|
T Consensus 140 ---RPav~VPESKrvd~lLkeFR~~RnHMAIViDE-fGgVsGLVTIEDiLEqIVG 190 (293)
T COG4535 140 ---RPAVVVPESKRVDRLLKEFRSQRNHMAIVIDE-FGGVSGLVTIEDILEQIVG 190 (293)
T ss_pred ---ccceecccchhHHHHHHHHHhhcCceEEEEec-cCCeeeeEEHHHHHHHHhc
Confidence 67889999999999999999999999999996 9999999999999999886
No 190
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.61 E-value=5.3e-07 Score=93.73 Aligned_cols=104 Identities=13% Similarity=0.184 Sum_probs=89.1
Q ss_pred ecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccccCCcc
Q 010368 384 LRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRC 463 (512)
Q Consensus 384 v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~ 463 (512)
..++.+..+++..|...+.++++|+|++++++|+++..++......+ .++.+.+ ....
T Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~---------~~~~~~~-------------~~~~ 347 (400)
T PRK10070 290 KTPGFGPRSALKLLQDEDREYGYVIERGNKFVGAVSIDSLKTALTQQ---------QGLDAAL-------------IDAP 347 (400)
T ss_pred cCCCCCHHHHHHHHHhcCCceEEEEcCCCcEEEEEeHHHHHhhhhcC---------Cchhhhh-------------ccCC
Confidence 44667899999999999999999999999999999999997755432 2455554 3457
Q ss_pred eEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhh
Q 010368 464 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLL 511 (512)
Q Consensus 464 ~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll 511 (512)
.++.++++|.+++..|...... +||||+ +|+++|+||..++++.|.
T Consensus 348 ~~~~~~~~~~~~~~~~~~~~~~-~~v~~~-~~~~~g~~~~~~~~~~~~ 393 (400)
T PRK10070 348 LAVDAQTPLSELLSHVGQAPCA-VPVVDE-DQQYVGIISKGMLLRALD 393 (400)
T ss_pred ceeCCCCCHHHHHHHHHhCCCc-EEEECC-CCcEEEEEEHHHHHHHHH
Confidence 8899999999999999998866 999996 999999999999999875
No 191
>COG1253 TlyC Hemolysins and related proteins containing CBS domains [General function prediction only]
Probab=98.50 E-value=4.2e-06 Score=88.35 Aligned_cols=131 Identities=19% Similarity=0.349 Sum_probs=108.2
Q ss_pred hhhCcccccCCCCCcEEEEeCCCCHHHHHHHHHHcCCcEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCCCCCChhhHhh
Q 010368 184 LSTHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELET 263 (512)
Q Consensus 184 l~~~~~yd~~p~s~kvv~ld~~~~v~~A~~~l~e~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~~~~~~l~~ 263 (512)
|.+.++-++|-.-.+++.++.+.++.++++.+.+.+.++.||++.....++|++...|++..+..- +....
T Consensus 203 l~~~~v~eiMtPR~~i~~l~~~~~~~~~~~~~~~~~~SR~PV~~~~~D~iiGiv~~Kdll~~~~~~---~~~~~------ 273 (429)
T COG1253 203 LDDRTVREIMTPRTDIVALDLTDTVEELIELILESGHSRIPVYDGDLDNIIGIVHVKDLLRALLDG---QSDLD------ 273 (429)
T ss_pred cCCcEeeeEeeecccEEEEcCCCCHHHHHHHHHhCCCCeeeEEcCCCCcEEEEEEHHHHHHHHhcC---ccccc------
Confidence 358889999988899999999999999999999999999999997778999999999998766321 10000
Q ss_pred hhHHHHHHhhhhhccccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHH
Q 010368 264 HTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCV 343 (512)
Q Consensus 264 ~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l 343 (512)
.. . .-++++.++++.++.++++.|.+++.+-..|+| +-| ...|++|..||+..+
T Consensus 274 --~~------~------------~~~~~~~Vpet~~~~~lL~~~r~~~~hmAiVvD---EyG---~~~GlVTleDIiEeI 327 (429)
T COG1253 274 --LR------V------------LVRPPLFVPETLSLSDLLEEFREERTHMAIVVD---EYG---GVEGLVTLEDIIEEI 327 (429)
T ss_pred --hh------h------------cccCCeEecCCCcHHHHHHHHHHhCCeEEEEEE---cCC---CeEEEeEHHHHHHHH
Confidence 00 0 123899999999999999999999999999995 334 699999999999999
Q ss_pred Hhhccc
Q 010368 344 CRYFRH 349 (512)
Q Consensus 344 ~~~~~~ 349 (512)
...+.+
T Consensus 328 vGei~d 333 (429)
T COG1253 328 VGEIPD 333 (429)
T ss_pred hCCCcC
Confidence 876544
No 192
>cd02854 Glycogen_branching_enzyme_like_N_term Glycogen branching enzyme-like N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the glycogen branching enzyme-like proteins may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobi
Probab=98.44 E-value=9.9e-07 Score=73.19 Aligned_cols=63 Identities=25% Similarity=0.533 Sum_probs=48.6
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEEe--------CCc-eEEEEEEE-CCEE--eeCCCCC
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI--------PPG-YHQYKFCV-DGEW--RHDEHQP 92 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~L--------~~g-~~~ykf~V-Dg~w--~~d~~~~ 92 (512)
++|+ |...|++|+|+|+||+|+.. .+|.+. ..|.|++.++. +.| .|.|++.. ||+| +.||-..
T Consensus 7 ~~FrvwAP~A~~V~l~GdFn~W~~~~~~m~k~--~~G~W~~~i~~~~~~~~~~~~g~~Yky~i~~~~G~~~~~~DPyA~ 83 (99)
T cd02854 7 VTYREWAPNAEEVYLIGDFNNWDRNAHPLKKD--EFGVWEITIPPNEDGSPAIPHGSKIKVRMVTPSGEWIDRIPAWIK 83 (99)
T ss_pred EEEEEECCCCCEEEEEccCCCCCCcCcccEEC--CCCEEEEEECCcccccccCCCCCEEEEEEEeCCCCEEEEcCccee
Confidence 6777 99999999999999999874 589874 46999999885 344 36666666 7876 5777654
No 193
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.41 E-value=8.9e-07 Score=88.42 Aligned_cols=163 Identities=17% Similarity=0.260 Sum_probs=117.8
Q ss_pred cEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCC---CCCChhhHhhhhHHHHHHhhhhhccccCCCCCcCCCCceEeCCC
Q 010368 221 SMAPLWDFSKARFVGVLSASDFILILRELGNHG---SNLTEEELETHTISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPN 297 (512)
Q Consensus 221 ~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~---~~~~~~~l~~~~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~ 297 (512)
...|++.+ ...-+|.++.+.++..+..-+ .+.+.|. ...-+..|+.....+ ..+++.+.|+
T Consensus 61 l~tPlvsS----pMDTVtes~MAiaMAl~ggIg~IHhNctpe~-QA~~v~~vK~~~~g~-----------~~~p~v~sp~ 124 (503)
T KOG2550|consen 61 LNTPLVSS----PMDTVTESEMAIAMALLGGIGFIHHNCTPED-QADMVRRVKNYENGF-----------INNPIVISPT 124 (503)
T ss_pred ccCceecc----CCcccchhHHHHHHHhcCCceeeecCCCHHH-HHHHHHHHHHhhccc-----------ccCCcccCCc
Confidence 34577654 345678888777665444211 2233222 122355566555433 4678889999
Q ss_pred CCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccCCCC
Q 010368 298 DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIGEPN 377 (512)
Q Consensus 298 ~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m 377 (512)
.++.++++.-..+++..+||.....-+ ++++|+||.+|| .|+.++ ...+. ++|
T Consensus 125 ~tvg~v~~~k~~~gF~g~pvTe~g~~~---~KLvG~vtsrdi-~f~~~~-----------~~~~~------------~vm 177 (503)
T KOG2550|consen 125 TTVGEVKEAKEKHGFSGIPVTEDGKRG---SKLVGIITSRDI-QFLEDN-----------SLLVS------------DVM 177 (503)
T ss_pred ccchhhhhhcccccccccccccCCccc---ceeEEEEehhhh-hhhhcc-----------cchhh------------hhc
Confidence 999999999999999999999522222 389999999998 455221 12233 347
Q ss_pred CCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHH
Q 010368 378 RRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITAL 426 (512)
Q Consensus 378 ~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~ 426 (512)
....++.+...++.++-+++.+.+...+||||++|.++.++++.||.+.
T Consensus 178 t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 178 TKNPVTGAQGITLKEANEILKKIKKGKLPVVDDKGELVAMLSRTDLMKN 226 (503)
T ss_pred ccccccccccccHHHHHHHHHhhhcCCcceeccCCceeeeeehhhhhhh
Confidence 7777889999999999999999999999999999999999999999763
No 194
>KOG2550 consensus IMP dehydrogenase/GMP reductase [Nucleotide transport and metabolism]
Probab=98.40 E-value=5.8e-07 Score=89.71 Aligned_cols=107 Identities=19% Similarity=0.288 Sum_probs=92.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECC---CCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCc
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDD---NDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPY 456 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~---~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~ 456 (512)
+++.+.|+.++.++++....+++..+||..+ ..+|+|+||.+|+-.+ .++ ...+.++|
T Consensus 117 ~p~v~sp~~tvg~v~~~k~~~gF~g~pvTe~g~~~~KLvG~vtsrdi~f~-~~~--------~~~~~~vm---------- 177 (503)
T KOG2550|consen 117 NPIVISPTTTVGEVKEAKEKHGFSGIPVTEDGKRGSKLVGIITSRDIQFL-EDN--------SLLVSDVM---------- 177 (503)
T ss_pred CCcccCCcccchhhhhhcccccccccccccCCcccceeEEEEehhhhhhh-hcc--------cchhhhhc----------
Confidence 5678899999999999999999999999964 4589999999999776 222 24667766
Q ss_pred cccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 457 ELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 457 ~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
..+.++...+.+|.++-+++.+++...|||||+ +|.++.+|+++||.+.
T Consensus 178 ---t~~~~~~~~gi~l~~~neiL~~~kkGkl~iv~~-~gelva~~~rtDl~k~ 226 (503)
T KOG2550|consen 178 ---TKNPVTGAQGITLKEANEILKKIKKGKLPVVDD-KGELVAMLSRTDLMKN 226 (503)
T ss_pred ---ccccccccccccHHHHHHHHHhhhcCCcceecc-CCceeeeeehhhhhhh
Confidence 556688889999999999999999999999996 9999999999999874
No 195
>PF02922 CBM_48: Carbohydrate-binding module 48 (Isoamylase N-terminal domain); InterPro: IPR004193 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. This domain is found in a range of enzymes that act on branched substrates ie. isoamylase, pullulanase and branching enzyme. Isoamylase hydrolyses 1,6-alpha-D-glucosidic branch linkages in glycogen, amylopectin and dextrin; 1,4-alpha-glucan branching enzyme functions in the formation of 1,6-glucosidic linkages of glycogen; and pullulanase is a starch-debranching enzyme.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 2BHZ_A 2BY2_A 2BY3_A 2BXY_A 2BY1_A 2BHY_A 2BHU_A 2BXZ_A 2BY0_A 2FHB_A ....
Probab=98.32 E-value=3.1e-07 Score=74.03 Aligned_cols=57 Identities=32% Similarity=0.616 Sum_probs=45.6
Q ss_pred eEEEE-ecCCCcEEEEEEccCC-CCCC-CCCCccCCCCCeEEEEEE--eCCceEEEEEEECCE
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNR-WSEL-LPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~-W~~~-~~m~~~~~~~~~f~~~~~--L~~g~~~ykf~VDg~ 84 (512)
-++|+ |...+++|.|++.|++ |... ++|.+ ...+|.|+++++ +++|.++|+|.|||.
T Consensus 12 ~~~F~vwaP~A~~V~l~~~~~~~~~~~~~~m~~-~~~~G~w~~~~~~~~~~g~~~Y~y~i~~~ 73 (85)
T PF02922_consen 12 GVTFRVWAPNAKSVELVLYFNGSWPAEEYPMTR-KDDDGVWEVTVPGDLPPGGYYYKYRIDGD 73 (85)
T ss_dssp EEEEEEE-TTESEEEEEEETTTSSEEEEEEEEE-ECTTTEEEEEEEGCGTTTT-EEEEEEEET
T ss_pred EEEEEEECCCCCEEEEEEEeeecCCCceEEeee-cCCCCEEEEEEcCCcCCCCEEEEEEEEeC
Confidence 46777 9999999999999999 8654 58874 245799999999 888988888888764
No 196
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=98.30 E-value=9.9e-07 Score=92.38 Aligned_cols=149 Identities=19% Similarity=0.360 Sum_probs=112.2
Q ss_pred ccccccCccccc-------ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCC-----CcEEEEEeHHHHHHHH
Q 010368 360 PICAIPVGTWVP-------KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDN-----DSLLDIYCRSDITALA 427 (512)
Q Consensus 360 ~v~~l~ig~~~~-------~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~-----g~liGivs~~Di~~~~ 427 (512)
.++.++.-.|.+ .++++|..+++++..-+.+..+.+++....++.+||+|+. +++.|+|-++.++.+.
T Consensus 564 ~LkgvP~Le~~pe~~mr~L~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~~~~~~~~~l~GlILRshl~vlL 643 (762)
T KOG0474|consen 564 QLKGVPFLEWEPEPYMRNLTAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDEPPSNEAGRLHGLILRSHLLVLL 643 (762)
T ss_pred hccCCccccCCCchHhhhhhHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccCCCCccchhhhHHHHHHHHHHHH
Confidence 345556555644 3678999999999999999999999999999999999862 5899999999999887
Q ss_pred hccccccc--Cccc------ccHHHHHhcCCC-C-----------CCC-ccccCCcceEEcCCCCHHHHHHHHhcCCCcE
Q 010368 428 KDKAYAHI--NLSE------MTIHQALQLGQD-S-----------YSP-YELRSQRCQMCLPSDTLHKVMERLANPGVRR 486 (512)
Q Consensus 428 ~~~~~~~l--~~~~------~~v~~~l~~~~~-~-----------~~~-~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~ 486 (512)
+++.+... ...+ .+..++-..... . ... ..+|.+.+++|.+++++.+++..+..-+.|+
T Consensus 644 ~~~~f~~~~~~~~~~~~~~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRh 723 (762)
T KOG0474|consen 644 KKRVFVEESRSTFDLPVRRKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRH 723 (762)
T ss_pred HhhhhhccCccccCcchhhcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhccee
Confidence 76555321 1111 122222211000 0 000 1257888999999999999999999999999
Q ss_pred EEEEeCCCCeEEEEEehHHHHHH
Q 010368 487 LVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 487 l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
+.||+. .++++|++|++|+.++
T Consensus 724 LlVv~~-~~~~~gilTR~D~~~~ 745 (762)
T KOG0474|consen 724 LLVVPK-TNRVVGILTRKDLARY 745 (762)
T ss_pred EEEecC-CCceeEEEehhhhhhH
Confidence 999996 7888999999999865
No 197
>TIGR01186 proV glycine betaine/L-proline transport ATP binding subunit. This model describes the glycine betaine/L-proline ATP binding subunit in bacteria and its equivalents in archaea. This transport system belong to the larger ATP-Binding Cassette (ABC) transporter superfamily. The characteristic feature of these transporter is the obligatory coupling of ATP hydrolysis to substrate translocation. The minimal configuration of bacterial ABC transport system: an ATPase or ATP binding subunit; An integral membrane protein; a hydrophilic polypetpide, which likely functions as substrate binding protein. Functionally, this transport system is involved in osmoregulation. Under conditions of stress, the organism recruits these transport system to accumulate glycine betaine and other solutes which offer osmo-protection. It has been demonstrated that glycine betaine uptake is accompanied by symport with sodium ions. The locus has been named variously as proU or opuA. A gene library from L.lact
Probab=98.27 E-value=1.4e-05 Score=82.12 Aligned_cols=111 Identities=12% Similarity=0.239 Sum_probs=89.0
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
.......++.+..+++..|...+...+.|++ .+. ++.|.++..++..+.... ..+.+.
T Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~g~~~~~~~~~~~~~~------------~~~~~~---- 307 (363)
T TIGR01186 250 TGPITKTADKGPRSALQLMRDERVDSLYVVD--RQN----KLVGVVDVESIKQARKKA------------QGLQDV---- 307 (363)
T ss_pred ccceeecCCCCHHHHHHHHHhcCCceEEEEc--CCC----CEEEEEeHHHHHHHhhcC------------Cchhhh----
Confidence 3344567788999999999999999999994 344 799999999987655421 112222
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 430 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~ 430 (512)
+.....++.+++++.+++..|.+++.. +||+|++|+++|+|++.+++..+...
T Consensus 308 --------~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~i~~~~~~~~~~~~ 360 (363)
T TIGR01186 308 --------LIDDIYTVDAGTLLRETVRKVLKAGIK-VPVVDEDQRLVGIVTRGSLVDALYDS 360 (363)
T ss_pred --------hccCCceECCCCcHHHHHHHHHhCCCC-EEEECCCCcEEEEEEHHHHHHHHHhh
Confidence 445667899999999999999999988 99999999999999999999877654
No 198
>COG4536 CorB Putative Mg2+ and Co2+ transporter CorB [Inorganic ion transport and metabolism]
Probab=98.20 E-value=2.9e-05 Score=77.30 Aligned_cols=131 Identities=18% Similarity=0.311 Sum_probs=107.8
Q ss_pred hhCcccccCCCCCcEEEEeCCCCHHHHHHHHHHcCCcEeeeecCCCCeEEEeeeHHHHHHHHHHhhcCCCCCChhhHhhh
Q 010368 185 STHTAYELLPESGKVVALDIDLPVKQAFHILYEQGISMAPLWDFSKARFVGVLSASDFILILRELGNHGSNLTEEELETH 264 (512)
Q Consensus 185 ~~~~~yd~~p~s~kvv~ld~~~~v~~A~~~l~e~~i~~~pv~d~~~~~~vGilt~~Dii~il~~~~~~~~~~~~~~l~~~ 264 (512)
..-|+-|+|-.-..+..+|.+.|.++..+.+...--.++|||..+..+++|++-..|+++++.+.. +.+.+.+
T Consensus 198 e~~tV~DIMvpR~~i~~id~d~~~e~iv~ql~~s~HtRiplyr~~~DnIiGvlh~r~llr~l~e~~----~~~k~d~--- 270 (423)
T COG4536 198 ENLTVSDIMVPRNEIIGIDIDDPWEEIVRQLLHSPHTRIPLYRDDLDNIIGVLHVRDLLRLLNEKN----EFTKEDI--- 270 (423)
T ss_pred ccceeeeeeccccceeeecCCCCHHHHHHHHhhCCCCceeeecCChhHhhhhhhHHHHHHHhhccC----cccHhHH---
Confidence 356788888888899999999999999999999999999999888788999999999998884321 1222211
Q ss_pred hHHHHHHhhhhhccccCCCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHH
Q 010368 265 TISAWKEGKAYLNRQIDSHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVC 344 (512)
Q Consensus 265 ~i~~~~~~~~~~~~~~~~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~ 344 (512)
.. ...++..++..+++.+-+..+.+++-|-..|+| +-| .+.|++|..||+.-+.
T Consensus 271 --~~------------------~a~epyFVPe~Tpl~~QL~~F~~~k~hialVVD---EYG---~i~GLVTLEDIlEEIV 324 (423)
T COG4536 271 --LR------------------AADEPYFVPEGTPLSDQLVAFQRNKKHIALVVD---EYG---DIQGLVTLEDILEEIV 324 (423)
T ss_pred --HH------------------HhcCCeecCCCCcHHHHHHHHHHhcceEEEEEe---ccC---cEEeeeeHHHHHHHHh
Confidence 11 135788999999999999999999999999995 445 7999999999999888
Q ss_pred hhcc
Q 010368 345 RYFR 348 (512)
Q Consensus 345 ~~~~ 348 (512)
..+.
T Consensus 325 Gdft 328 (423)
T COG4536 325 GDFT 328 (423)
T ss_pred cccc
Confidence 7665
No 199
>COG4535 CorC Putative Mg2+ and Co2+ transporter CorC [Inorganic ion transport and metabolism]
Probab=98.16 E-value=6.2e-05 Score=70.34 Aligned_cols=120 Identities=13% Similarity=0.156 Sum_probs=97.6
Q ss_pred CCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccC
Q 010368 287 FPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPV 366 (512)
Q Consensus 287 ~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~i 366 (512)
.....+++..+.++.+++..|++...++.||+.. +.+ .+.||+-.+|+|+++...... ..++++
T Consensus 75 PRSQM~~l~~~~~l~~~l~~iiesaHSRfPVi~e-dkD----~v~GIL~AKDLL~~~~~~~~~---------F~i~~l-- 138 (293)
T COG4535 75 PRSQMITLKRNQTLDECLDVIIESAHSRFPVISE-DKD----HVEGILLAKDLLPFMRSDAEP---------FDIKEL-- 138 (293)
T ss_pred cHHHheeccccCCHHHHHHHHHHhccccCCcccC-Cch----hhhhhhhHHHHHHHhcCCccc---------ccHHHh--
Confidence 4567999999999999999999999999999953 222 699999999999987653211 112222
Q ss_pred cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhccccc
Q 010368 367 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYA 433 (512)
Q Consensus 367 g~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~ 433 (512)
-+|.+.++++-.+...++-+..++.+...|+|+-|-+-|+||..|++..+-.....
T Consensus 139 -----------LRPav~VPESKrvd~lLkeFR~~RnHMAIViDEfGgVsGLVTIEDiLEqIVGdIED 194 (293)
T COG4535 139 -----------LRPAVVVPESKRVDRLLKEFRSQRNHMAIVIDEFGGVSGLVTIEDILEQIVGDIED 194 (293)
T ss_pred -----------cccceecccchhHHHHHHHHHhhcCceEEEEeccCCeeeeEEHHHHHHHHhccccc
Confidence 35778899998999999999999999999999999999999999999877654443
No 200
>PRK10070 glycine betaine transporter ATP-binding subunit; Provisional
Probab=98.08 E-value=4.7e-05 Score=79.34 Aligned_cols=107 Identities=12% Similarity=0.161 Sum_probs=85.0
Q ss_pred EeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccc
Q 010368 293 YAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPK 372 (512)
Q Consensus 293 ~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~ 372 (512)
...++.+..+|+..|..++.+.+.|+| .. + +++|+++..++.+..... ..+.+.
T Consensus 289 ~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~-~---~~~g~~~~~~~~~~~~~~------------~~~~~~-------- 342 (400)
T PRK10070 289 RKTPGFGPRSALKLLQDEDREYGYVIE--RG-N---KFVGAVSIDSLKTALTQQ------------QGLDAA-------- 342 (400)
T ss_pred ccCCCCCHHHHHHHHHhcCCceEEEEc--CC-C---cEEEEEeHHHHHhhhhcC------------Cchhhh--------
Confidence 345777899999999999999999994 33 3 799999999997654321 112222
Q ss_pred cCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 010368 373 IGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDK 430 (512)
Q Consensus 373 v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~ 430 (512)
+.....++.+++++.+++..+.+.... +||+|++|+++|+|++.++++.+...
T Consensus 343 ----~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~~~~~~~g~~~~~~~~~~~~~~ 395 (400)
T PRK10070 343 ----LIDAPLAVDAQTPLSELLSHVGQAPCA-VPVVDEDQQYVGIISKGMLLRALDRE 395 (400)
T ss_pred ----hccCCceeCCCCCHHHHHHHHHhCCCc-EEEECCCCcEEEEEEHHHHHHHHHhc
Confidence 344567899999999999999987765 99999999999999999999876543
No 201
>KOG0474 consensus Cl- channel CLC-7 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.82 E-value=6.9e-05 Score=78.95 Aligned_cols=145 Identities=13% Similarity=0.185 Sum_probs=106.6
Q ss_pred CCCCcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhc-ccC-CC--Ccccc
Q 010368 282 SHGKAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF-RHC-SS--SLPIL 357 (512)
Q Consensus 282 ~~g~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~-~~~-~~--~~~~l 357 (512)
.++++|.++++++..-+.+....+.+.....+..||+|. .+.+....+.|+|-.+.++..+.+.. .+. .+ ..+..
T Consensus 583 ~a~ev~~~pvi~l~~~ekV~~Iv~vLk~t~HngFPVvd~-~~~~~~~~l~GlILRshl~vlL~~~~f~~~~~~~~~~~~~ 661 (762)
T KOG0474|consen 583 TAGEVMSKPVICLNRVEKVAVIVDVLKSTNHNGFPVVDE-PPSNEAGRLHGLILRSHLLVLLKKRVFVEESRSTFDLPVR 661 (762)
T ss_pred hHhhhccCCeEEEechhhHHHHHHHHHhcCcCCCccccC-CCCccchhhhHHHHHHHHHHHHHhhhhhccCccccCcchh
Confidence 356789999999999999999999999999999999974 22222247899999999988775532 111 00 00000
Q ss_pred -----------cCccccccCcccc----cccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHH
Q 010368 358 -----------KLPICAIPVGTWV----PKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSD 422 (512)
Q Consensus 358 -----------~~~v~~l~ig~~~----~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~D 422 (512)
..+++++.+.... ......|++.+.++.+++++..+..++++-+.+++.||++..+.+|++|++|
T Consensus 662 ~~~~~~d~a~r~~~i~dv~lt~~e~~~yvDl~p~~n~sPytV~~~mSl~k~~~lFR~lGLRhLlVv~~~~~~~gilTR~D 741 (762)
T KOG0474|consen 662 RKFTFRDFAKREPSIEDVHLTSEEMEMYVDLHPFMNPSPYTVPETMSLAKAFILFRQLGLRHLLVVPKTNRVVGILTRKD 741 (762)
T ss_pred hcCCHHHhhhcCCchhhhhcchHhHhhccccccccCCCCcccCcccchHHHHHHHHHhcceeEEEecCCCceeEEEehhh
Confidence 0112232222111 1234568888999999999999999999999999999999888999999999
Q ss_pred HHHHH
Q 010368 423 ITALA 427 (512)
Q Consensus 423 i~~~~ 427 (512)
+...-
T Consensus 742 ~~~~~ 746 (762)
T KOG0474|consen 742 LARYR 746 (762)
T ss_pred hhhHH
Confidence 98643
No 202
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.80 E-value=4e-05 Score=65.20 Aligned_cols=54 Identities=26% Similarity=0.462 Sum_probs=48.6
Q ss_pred ccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 372 KIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 372 ~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
+++++|.+++.++.+++++.++++.|.+.+...+||+|++|+++|+|+.+||.+
T Consensus 59 ~v~dim~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~~~~l~Givt~~dl~~ 112 (113)
T cd04597 59 RVRDVINRKPVTARPNDPLREALNLMHEHNIRTLPVVDDDGTPAGIITLLDLAE 112 (113)
T ss_pred hHHHhcCCCCCEECCcCcHHHHHHHHHHcCCCEEEEECCCCeEEEEEEHHHhhc
Confidence 345558888999999999999999999999999999999999999999999863
No 203
>cd04597 CBS_pair_DRTGG_assoc2 This cd contains two tandem repeats of the cystathionine beta-synthase (CBS pair) domains associated with a DRTGG domain upstream. The function of the DRTGG domain, named after its conserved residues, is unknown. CBS is a small domain originally identified in cystathionine beta-synthase and subsequently found in a wide range of different proteins. CBS domains usually come in tandem repeats, which associate to form a so-called Bateman domain or a CBS pair which is reflected in this model. The interface between the two CBS domains forms a cleft that is a potential ligand binding site. The CBS pair coexists with a variety of other functional domains. It has been proposed that the CBS domain may play a regulatory role, although its exact function is unknown.
Probab=97.73 E-value=7.3e-05 Score=63.57 Aligned_cols=48 Identities=21% Similarity=0.423 Sum_probs=44.4
Q ss_pred CCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 460 SQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 460 ~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
.+++.++.+++++.++++.|.+.+.+.+||+|+ +|+++|+||..||.+
T Consensus 65 ~~~~~~v~~~~~l~~a~~~~~~~~~~~lpVvd~-~~~l~Givt~~dl~~ 112 (113)
T cd04597 65 NRKPVTARPNDPLREALNLMHEHNIRTLPVVDD-DGTPAGIITLLDLAE 112 (113)
T ss_pred CCCCCEECCcCcHHHHHHHHHHcCCCEEEEECC-CCeEEEEEEHHHhhc
Confidence 567889999999999999999999999999996 899999999999864
No 204
>cd02860 Pullulanase_N_term Pullulanase domain N-terminus. Pullulanase (AKA dextrinase; alpha-dextrin endo-1,6-alpha glucosidase) is an enzyme with action similar to that of isoamylase; it cleaves 1,6-alpha-glucosidic linkages in pullulan, amylopectin, and glycogen, and in alpha-and beta-amylase limit-dextrins of amylopectin and glycogen. The N-terminus of pullulanase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.72 E-value=9.9e-05 Score=61.43 Aligned_cols=63 Identities=22% Similarity=0.239 Sum_probs=48.3
Q ss_pred EEEE-ecCCCcEEEEEEccCCCC-----CCCCCCccCCCCCeEEEEEE-eCCceEEEEEEECCE-----EeeCCCCCee
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWS-----ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQPFI 94 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~-----~~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg~-----w~~d~~~~~~ 94 (512)
++|. |...+++|.|+. |++|. ..++|.+ ..+|.|++.+. +.+|.+ |+|.|+|. ...||.....
T Consensus 10 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~~~~m~~--~~~gvw~~~v~~~~~g~~-Y~y~i~~~~~~~~~~~DPyA~~~ 84 (100)
T cd02860 10 TTFRLWAPTAQSVKLLL-YDKDDQDKVLETVQMKR--GENGVWSVTLDGDLEGYY-YLYEVKVYKGETNEVVDPYAKAL 84 (100)
T ss_pred EEEEEECCCCcEEEEEE-EcCCCCCCcceeEeeec--CCCCEEEEEeCCccCCcE-EEEEEEEeceEEEEEcCcccEeE
Confidence 6775 999999999998 89997 3457876 35799999998 555654 88888775 6777766543
No 205
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.71 E-value=0.0001 Score=51.07 Aligned_cols=47 Identities=38% Similarity=0.578 Sum_probs=43.1
Q ss_pred ceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 463 CQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 463 ~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
+.++.+++++.++++.|.+.+.+.+||+++ +++++|+++..++++.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~-~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDE-EGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECC-CCeEEEEEEHHHHHHhh
Confidence 567899999999999999999999999995 78999999999998875
No 206
>PF00686 CBM_20: Starch binding domain; InterPro: IPR002044 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. This domain binds to starch, and is found often at the C terminus of a variety of glycosyl hydrolases acting on polysaccharides more rapidly than on oligosaccharides. Reations include: the hydrolysis of terminal 1,4-linked alpha-D-glucose residues successively from non-reducing ends of the chains with release of beta-D-glucose, the degradation of starch to cyclodextrins by formation of a 1,4-alpha-D-glucosidic bond, and hydrolysis of 1,4-alpha-glucosidic linkages in polysaccharides to remove successive maltose units from the non-reducing ends of the chains.; GO: 0003824 catalytic activity, 0005975 carbohydrate metabolic process; PDB: 1KUL_A 1ACZ_A 1AC0_A 1KUM_A 2Z0B_C 9CGT_A 3CGT_A 6CGT_A 4CGT_A 1CGT_A ....
Probab=97.66 E-value=0.00011 Score=60.78 Aligned_cols=56 Identities=25% Similarity=0.561 Sum_probs=44.3
Q ss_pred eeEEEEe---cCCCcEEEEEEccC---CCCC--CCCCCccCC--CCCeEEEEEEeCCce-EEEEEEE
Q 010368 26 IPMRFVW---PYGGRSVFLSGSFN---RWSE--LLPMSPVEG--CPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 26 ~~~~f~w---~~~~~~V~l~Gsf~---~W~~--~~~m~~~~~--~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
+.++|.- ...|++|+|+||.. +|++ .++|...+. ....|++.+.||.|. ++|||++
T Consensus 2 v~V~F~v~~~~~~ge~v~i~Gs~~~LG~W~~~~a~~l~~~~~~~~~~~W~~~v~lp~~~~~eYKy~i 68 (96)
T PF00686_consen 2 VSVTFRVNYQTQPGESVYIVGSCPELGNWDPKKAVPLQWNEGTENYPIWSATVDLPAGTPFEYKYVI 68 (96)
T ss_dssp EEEEEEESE---TTEEEEEEESSGGGTTTSGGGSBESEBESSSSTTTSEEEEEEEETTSEEEEEEEE
T ss_pred EEEEEEEEeECCCCCEEEEEECcHHhCCCChHhccccccccCCCCCCeEEEEEECcCCCEEEEEEEE
Confidence 5677764 44579999999998 8997 468876543 457999999999985 9999999
No 207
>cd05814 CBM20_Prei4 Prei4, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Preimplantation protein 4 (Prei4) is a protein of unknown function that is expressed during mouse preimplantation embryogenesis. In addition to the N-terminal CBM20 domain, Prei4 contains a C-terminal glycerophosphoryl diester phosphodiesterase (GDPD) domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=97.65 E-value=0.0003 Score=60.67 Aligned_cols=49 Identities=22% Similarity=0.478 Sum_probs=39.9
Q ss_pred CCCcEEEEEEc---cCCCCCC--CCCCccCCCCCeEEEEEEeCCc-eEEEEEEEC
Q 010368 34 YGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVD 82 (512)
Q Consensus 34 ~~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~f~~~~~L~~g-~~~ykf~VD 82 (512)
..|++|+|+|+ +.+|++. .+|.+.....+.|++.+.||++ .++|||++.
T Consensus 13 ~~ge~v~v~G~~~~LG~W~~~~a~~l~~~~~~~~~W~~~v~lp~~~~veYkY~~~ 67 (120)
T cd05814 13 APGEVVAVVGSLPVLGNWQPEKAVPLEKEDDDCNLWKASIELPRGVDFQYRYFVA 67 (120)
T ss_pred CCCCEEEEEeChHHhCCCCHHhCeeCccCCCcCCccEEEEEECCCCeEEEEEEEE
Confidence 35799999999 9999854 5887642245789999999998 699999993
No 208
>cd02855 Glycogen_branching_enzyme_N_term Glycogen branching enzyme N-terminus domain. Glycogen branching enzyme (AKA 1,4 alpha glucan branching enzyme) catalyzes the formation of alpha-1,6 branch points in either glycogen or starch by cleavage of the alpha-1,4 glucosidic linkage yielding a non-reducing end oligosaccharide chain and subsequent attachment to the alpha-1,6 position. By increasing the number of non-reducing ends glycogen is more reactive to synthesis and digestion as well as being more soluble. The N-terminus of the 1,4 alpha glucan branching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitina
Probab=97.62 E-value=0.00042 Score=58.09 Aligned_cols=75 Identities=21% Similarity=0.395 Sum_probs=48.3
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEE-eCCce-EEEEEEEC-CEE--eeCCCCCeeeCCCCC
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGY-HQYKFCVD-GEW--RHDEHQPFISSEYGI 100 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~-L~~g~-~~ykf~VD-g~w--~~d~~~~~~~d~~G~ 100 (512)
++|+ |..++++|.|+++|++|... .+|.+.+ ..|.|.+.+. +++|. |+|++..+ |.| +.||.....+.+ ..
T Consensus 23 ~~frv~aP~A~~V~l~~~~~~~~~~~~~m~~~~-~~G~w~~~v~~~~~~~~Y~~~v~~~~g~~~~~~DPYa~~~~~~-~~ 100 (106)
T cd02855 23 VRFAVWAPNARRVSVVGDFNGWDGRRHPMRRRG-DSGVWELFIPGLGEGELYKYEILGADGHLPLKADPYAFYSELR-PG 100 (106)
T ss_pred EEEEEECCCCCEEEEEEECCCCCCcceecEECC-CCCEEEEEECCCCCCCEEEEEEECCCCCEEEeeCCCceeeEeC-CC
Confidence 5676 99999999999999999653 5887642 3689999887 66664 44444444 333 445544333332 33
Q ss_pred eeeE
Q 010368 101 VNTV 104 (512)
Q Consensus 101 ~nn~ 104 (512)
.++|
T Consensus 101 ~~~~ 104 (106)
T cd02855 101 TASI 104 (106)
T ss_pred CeEE
Confidence 4444
No 209
>smart00116 CBS Domain in cystathionine beta-synthase and other proteins. Domain present in all 3 forms of cellular life. Present in two copies in inosine monophosphate dehydrogenase, of which one is disordered in the crystal structure [3]. A number of disease states are associated with CBS-containing proteins including homocystinuria, Becker's and Thomsen disease.
Probab=97.52 E-value=0.00031 Score=48.59 Aligned_cols=47 Identities=30% Similarity=0.543 Sum_probs=42.3
Q ss_pred ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHH
Q 010368 381 LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALA 427 (512)
Q Consensus 381 ~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~ 427 (512)
+.++.+++++.++++.|.+.+.+.+||++++++++|+++..++.+.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~g~i~~~~l~~~~ 48 (49)
T smart00116 2 VVTVSPDTTLEEALELLREHGIRRLPVVDEEGRLVGIVTRRDIIKAL 48 (49)
T ss_pred ceEecCCCcHHHHHHHHHHhCCCcccEECCCCeEEEEEEHHHHHHhh
Confidence 45788999999999999999999999999889999999999997653
No 210
>COG0296 GlgB 1,4-alpha-glucan branching enzyme [Carbohydrate transport and metabolism]
Probab=97.50 E-value=0.0002 Score=77.51 Aligned_cols=66 Identities=27% Similarity=0.563 Sum_probs=52.0
Q ss_pred eeeEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEE-eCCceEEEEEEECCE-----EeeCCCCC
Q 010368 25 LIPMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE-----WRHDEHQP 92 (512)
Q Consensus 25 ~~~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg~-----w~~d~~~~ 92 (512)
.-.++|. |...++.|.|.|+||+|... .+|... +..|.|+++++ +++| ++|||.+++. |+.||..-
T Consensus 35 ~~~~~F~vWAP~a~~V~vvgdfn~w~~~~~~~~~~-~~~G~we~~vp~~~~G-~~Yky~l~~~~g~~~~~~DP~a~ 108 (628)
T COG0296 35 VSGVRFRVWAPNARRVSLVGDFNDWDGRRMPMRDR-KESGIWELFVPGAPPG-TRYKYELIDPSGQLRLKADPYAR 108 (628)
T ss_pred CCceEEEEECCCCCeEEEEeecCCccceecccccC-CCCceEEEeccCCCCC-CeEEEEEeCCCCceeeccCchhh
Confidence 3468888 99999999999999999884 244432 25699999999 9999 9999999653 36666543
No 211
>cd05808 CBM20_alpha_amylase Alpha-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in several bacterial and fungal alpha-amylases including the maltopentaose-forming amylases (G5-amylases). Most alpha-amylases have, in addition to the C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13, which hydrolyzes internal alpha-1,4-glucosidic bonds in starch and related saccharides, yielding maltotriose and maltose. Two types of soluble substrates are used by alpha-amylases including long substrates (e.g. amylose) and short substrates (e.g. maltodextrins or maltooligosaccharides). The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. lafo
Probab=97.49 E-value=0.00044 Score=56.87 Aligned_cols=53 Identities=23% Similarity=0.466 Sum_probs=40.8
Q ss_pred eEEEEe---cCCCcEEEEEEc---cCCCCCC--CCCCccCCCCCeEEEEEEeCCc-eEEEEEEE
Q 010368 27 PMRFVW---PYGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (512)
Q Consensus 27 ~~~f~w---~~~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~f~~~~~L~~g-~~~ykf~V 81 (512)
+++|.- ...|++|+|+|+ |.+|++. ++|... ..+.|++.+.||+| .++|||++
T Consensus 2 ~v~F~v~~~t~~ge~l~v~G~~~~lG~W~~~~a~~l~~~--~~~~W~~~v~l~~~~~~eYKy~~ 63 (95)
T cd05808 2 AVTFNVTATTVWGQNVYVVGNVPELGNWSPANAVALSAA--TYPVWSGTVDLPAGTAIEYKYIK 63 (95)
T ss_pred eEEEEEEEECCCCCEEEEEeCcHHhCCCChhhCccCCCC--CCCCEEEEEEeCCCCeEEEEEEE
Confidence 455552 335799999995 7899864 588763 45789999999987 59999997
No 212
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=97.46 E-value=0.00099 Score=70.58 Aligned_cols=128 Identities=13% Similarity=0.199 Sum_probs=88.3
Q ss_pred ceeecCC-CCHHHHHHHHHhcCCCEEEEEC--CCCcEEEEEeHHHHHHHHhcccccccCcccccH------HHHHhcCCC
Q 010368 381 LAMLRPS-ASLSAALNLLVQAQVSSIPIVD--DNDSLLDIYCRSDITALAKDKAYAHINLSEMTI------HQALQLGQD 451 (512)
Q Consensus 381 ~~~v~~~-~~l~~a~~~m~~~~~~~lpVvd--~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v------~~~l~~~~~ 451 (512)
+..++.+ .++.+...+|.+..++.+||+= +..+++|++.++++...+........-....+. ..+.....+
T Consensus 558 L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~~~sq~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~~~~~~ 637 (696)
T KOG0475|consen 558 LIVITQDSMTLEDLESLMEDTDFSGFPVVLSEDSQRLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAVAGIPS 637 (696)
T ss_pred heeccccceeHHHHHHHHhhcccCCceEEEccccceeEEEEchHHHHHHHhhhccccccceecccccCCCCccccCCCCC
Confidence 5666655 8999999999999999889883 356899999999987543311110000000011 101100000
Q ss_pred CCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHh
Q 010368 452 SYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFL 510 (512)
Q Consensus 452 ~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~l 510 (512)
...-.++|.-.+.++...++...+++++.+-+++.+.|.. +|++.|+||..|++++.
T Consensus 638 ~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~~--~G~l~Giitkkd~l~~~ 694 (696)
T KOG0475|consen 638 RLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVTK--NGILLGIITKKDCLRHT 694 (696)
T ss_pred CcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEcc--CCeeEeeeehHHHHHhh
Confidence 0011235677899999999999999999999999887776 89999999999999864
No 213
>PLN02447 1,4-alpha-glucan-branching enzyme
Probab=97.41 E-value=0.00038 Score=77.22 Aligned_cols=63 Identities=24% Similarity=0.391 Sum_probs=47.9
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEEe-------CCceEEEEEEEC---CE--EeeCCCCC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-------PPGYHQYKFCVD---GE--WRHDEHQP 92 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~L-------~~g~~~ykf~VD---g~--w~~d~~~~ 92 (512)
-++|+ |.+.|++|+|+|+||+|+.. .+|.+. ..|+|++.++- +.| ..|||.|. |+ ++.||-..
T Consensus 115 g~~FrvWAP~A~~V~LvGdFN~W~~~~~~M~~~--~~GvWe~~ip~~~g~~~~~~G-~~Yky~i~~~~g~~~~r~dpya~ 191 (758)
T PLN02447 115 GITYREWAPGAKAAALIGDFNNWNPNAHWMTKN--EFGVWEIFLPDADGSPAIPHG-SRVKIRMETPDGRWVDRIPAWIK 191 (758)
T ss_pred CEEEEEECCCCCEEEEEEecCCCCCCccCceeC--CCCEEEEEECCccccccCCCC-CEEEEEEEeCCCcEEeecCchHh
Confidence 56787 99999999999999999875 488874 36999999974 334 37788873 54 46676553
No 214
>cd05809 CBM20_beta_amylase Beta-amylase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Beta-amylase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 14, which hydrolyzes the alpha-1,4-glucosidic bonds of starch, yielding beta-maltose from the nonreducing end of the substrate. Beta-amylase is found in both plants and microorganisms, however the plant members lack a C-terminal CBM20 domain and are not included in this group. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1
Probab=97.33 E-value=0.0011 Score=54.96 Aligned_cols=57 Identities=19% Similarity=0.392 Sum_probs=43.3
Q ss_pred eeeEEEEecC----CCcEEEEEE---ccCCCCCCC-CCCccC-CCCCeEEEEEEeCCce-EEEEEEE
Q 010368 25 LIPMRFVWPY----GGRSVFLSG---SFNRWSELL-PMSPVE-GCPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 25 ~~~~~f~w~~----~~~~V~l~G---sf~~W~~~~-~m~~~~-~~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
.||++|.-.. .|++|+|+| ++.+|+... +|.... ...+.|++.+.||+|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~G~~v~v~Gs~~~LG~W~~~~~~~~~~~~~~~~~W~~~~~lp~~~~veyKyv~ 68 (99)
T cd05809 2 PVPQTFVVKNVPTTIGETVYITGSRAELGNWDTKQYPIQLYYNSHSNDWRGTVHLPAGRNIEFKAIK 68 (99)
T ss_pred ceEEEEEEcccccCCCCEEEEEeChHHhCCCChhhhhhccccCCCCCCEEEEEEecCCCcEEEEEEE
Confidence 4889998532 479999999 677998752 344322 2347899999999986 9999999
No 215
>PRK12568 glycogen branching enzyme; Provisional
Probab=97.22 E-value=0.00078 Score=74.60 Aligned_cols=63 Identities=25% Similarity=0.545 Sum_probs=49.6
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEE-eCCceEEEEEEE---CCEEe--eCCCCC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV---DGEWR--HDEHQP 92 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~V---Dg~w~--~d~~~~ 92 (512)
-++|. |...|++|+|+|+||+|... .||.+. ..|+|++.++ +.+| ..|||.| ||+|. .||-..
T Consensus 139 Gv~FaVWAPnA~~VsVvGDFN~Wdg~~~pM~~~--~~GVWelfipg~~~G-~~YKYeI~~~~G~~~~k~DPYA~ 209 (730)
T PRK12568 139 GVRFAVWAPHAQRVAVVGDFNGWDVRRHPMRQR--IGGFWELFLPRVEAG-ARYKYAITAADGRVLLKADPVAR 209 (730)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccceecccC--CCCEEEEEECCCCCC-CEEEEEEEcCCCeEeecCCCcce
Confidence 46886 99999999999999999865 488764 5799999996 6677 4677777 78764 566554
No 216
>cd05820 CBM20_novamyl Novamyl (also known as acarviose transferase, ATase, maltogenic alpha-amylase, glucan 1,4-alpha-maltohydrolase, and AcbD), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Novamyl has a five-domain structure similar to that of cyclodextrin glucanotransferase (CGTase). Novamyl has a substrate-binding surface with an open groove which can accommodate both cyclodextrins and linear substrates. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific reco
Probab=97.18 E-value=0.0038 Score=52.19 Aligned_cols=64 Identities=28% Similarity=0.528 Sum_probs=47.9
Q ss_pred eeeEEEEecC-----CCcEEEEEEccC---CCCCCC-----CCCccCCCCCeEEEEEEeCCce-EEEEEEE---CC--EE
Q 010368 25 LIPMRFVWPY-----GGRSVFLSGSFN---RWSELL-----PMSPVEGCPTVFQIIWSIPPGY-HQYKFCV---DG--EW 85 (512)
Q Consensus 25 ~~~~~f~w~~-----~~~~V~l~Gsf~---~W~~~~-----~m~~~~~~~~~f~~~~~L~~g~-~~ykf~V---Dg--~w 85 (512)
.||++|+-.. -|++++|+|+-. +|+... +|.. .....|++.+.||.|. .+|||++ || .|
T Consensus 2 ~~~v~f~~~~~~~t~~Ge~l~vvGs~~~LG~W~~~~~~a~~~l~~--~~~~~W~~~~~lp~~~~veyK~v~~~~~g~v~W 79 (103)
T cd05820 2 QIPVIFTVQNTPETAPGEFLYLTGSVPELGNWSTSTDQAVGPLLC--PNWPDWFVVASVPAGTYIEFKFLKAPADGTGTW 79 (103)
T ss_pred cccEEEEEeCCcCcCCCCEEEEEECcHHhCCCChhcccccccccc--CCCCCEEEEEEcCCCCcEEEEEEEECCCCCEEE
Confidence 3899999763 478999999876 898742 5653 3346799999999986 9999998 44 36
Q ss_pred eeCCC
Q 010368 86 RHDEH 90 (512)
Q Consensus 86 ~~d~~ 90 (512)
...++
T Consensus 80 E~g~N 84 (103)
T cd05820 80 EGGSN 84 (103)
T ss_pred EeCCC
Confidence 55443
No 217
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=97.11 E-value=0.0055 Score=63.54 Aligned_cols=84 Identities=19% Similarity=0.307 Sum_probs=65.0
Q ss_pred cCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCccccCCcceEEcCCCCHHHHHHHH
Q 010368 400 AQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERL 479 (512)
Q Consensus 400 ~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m 479 (512)
++.+.+.|+|+ |+++..+...+..... ..++.+ + .....+++++++|.+++..+
T Consensus 298 ~~~~~~~~~~~-----~~~~~~~~~~~~~~~~-------~~~~~~-~-------------~~~~~~~~~~~~~~~~~~~~ 351 (382)
T TIGR03415 298 RRDTWLFTIDK-----QVRRRDAKLPVQAWAA-------EQEVES-L-------------EAAPTVINPDTLMRDVLAAR 351 (382)
T ss_pred cccceeEeecc-----ceecccchHhHhhccc-------ccchhh-h-------------cccCcccCCCCcHHHHHHHH
Confidence 78889999985 8888877665444211 123444 2 34577899999999999999
Q ss_pred hcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 480 ANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 480 ~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
...+. -++|+| +|+++|+|+..+|+.+|.+
T Consensus 352 ~~~~~-~~~v~~--~~~~~g~~~~~~~~~~~~~ 381 (382)
T TIGR03415 352 HRTGG-AILLVE--NGRIVGVIGDDNIYHALLG 381 (382)
T ss_pred hcCCC-CeEEee--CCeEEEEEeHHHHHHHHhc
Confidence 99885 588998 4999999999999999864
No 218
>cd02852 Isoamylase_N_term Isoamylase N-terminus domain. Isoamylase (aka glycogen 6-glucanohydrolase) is one of the starch-debranching enzymes that catalyzes the hydrolysis of alpha-1,6-glucosidic linkages specific in alpha-glucans such as amylopectin or glycogen. Isoamylase contains a bound calcium ion, but this is not in the same position as the conserved calcium ion that has been reported in other alpha-amylase family enzymes. The N-terminus of isoamylase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.10 E-value=0.0015 Score=56.22 Aligned_cols=60 Identities=20% Similarity=0.402 Sum_probs=44.9
Q ss_pred EEEE-ecCCCcEEEEEEccCCCC---C--CCCCCccC-CCCCeEEEEEE-eCCceEEEEEEECCEEeeCC
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWS---E--LLPMSPVE-GCPTVFQIIWS-IPPGYHQYKFCVDGEWRHDE 89 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~---~--~~~m~~~~-~~~~~f~~~~~-L~~g~~~ykf~VDg~w~~d~ 89 (512)
+.|. |...+++|.|+. |++|. + .++|.+.+ +.+|+|++.+. +.+|. .|+|.|+|.|.-++
T Consensus 9 ~~F~vwAP~A~~V~L~l-f~~~~~~~~~~~~~m~~~~~~~~gvW~~~v~~~~~g~-~Y~y~v~g~~~p~~ 76 (119)
T cd02852 9 VNFSVYSSNATAVELLL-FDPGDGDEPALEIELDPSVNRTGDVWHVFVEGLKPGQ-LYGYRVDGPFEPEQ 76 (119)
T ss_pred EEEEEECCCCCEEEEEE-EeCCCCCCceEEEeCcCcccccCCEEEEEECCCCCCC-EEEEEECCCCCCCc
Confidence 6675 999999999999 99886 2 24665432 23699999987 66775 79999999765443
No 219
>cd05818 CBM20_water_dikinase Phosphoglucan water dikinase (also known as alpha-glucan water dikinase), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This domain is found in the chloroplast-encoded phosphoglucan water dikinase, one of two enzymes involved in the phosphorylation of plant starches. In addition to the CBM20 domain, phosphoglucan water dikinase contains a C-terminal pyruvate binding domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=97.10 E-value=0.0031 Score=51.57 Aligned_cols=53 Identities=21% Similarity=0.352 Sum_probs=41.5
Q ss_pred eeEEEEecC---CCcEEEEEEcc---CCCCCCCCCCccCCCCCeEEEEEEeCCc-eEEEEEEE
Q 010368 26 IPMRFVWPY---GGRSVFLSGSF---NRWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (512)
Q Consensus 26 ~~~~f~w~~---~~~~V~l~Gsf---~~W~~~~~m~~~~~~~~~f~~~~~L~~g-~~~ykf~V 81 (512)
+.++|.-.+ .|+.++|+|+- .+|++..+|... .+.|++.+.||+| .++|||++
T Consensus 2 ~~v~F~~~~~~~~Gq~l~v~G~~~~LG~W~~~~~l~~~---~~~W~~~~~l~~~~~ieyKy~~ 61 (92)
T cd05818 2 VKLQVRLDHQVKFGEHVAILGSTKELGSWKKKVPMNWT---ENGWVCDLELDGGELVEYKFVI 61 (92)
T ss_pred EEEEEEEEEEcCCCCEEEEEeChHHHCCCCCCCccccC---CCCEEEEEEeCCCCcEEEEEEE
Confidence 455666333 47999999987 489987778653 3569999999987 49999998
No 220
>PRK12313 glycogen branching enzyme; Provisional
Probab=97.05 E-value=0.0017 Score=72.12 Aligned_cols=65 Identities=22% Similarity=0.375 Sum_probs=48.3
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEE-eCCc-eEEEEEEE-CCEE--eeCCCCCe
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCV-DGEW--RHDEHQPF 93 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~-L~~g-~~~ykf~V-Dg~w--~~d~~~~~ 93 (512)
.++|+ |...|++|+|+|+||+|... .+|.+. ..|+|++.++ +.+| .|.|++.. ||.| +.||....
T Consensus 39 gv~Frv~AP~A~~V~v~gdfn~w~~~~~~m~~~--~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPya~~ 110 (633)
T PRK12313 39 GTYFRVWAPNAQAVSVVGDFNDWRGNAHPLVRR--ESGVWEGFIPGAKEGQLYKYHISRQDGYQVEKIDPFAFY 110 (633)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCccccccccc--CCCEEEEEeCCCCCCCEEEEEEECCCCeEEecCCCceEE
Confidence 57786 99999999999999999875 588764 4699999998 4444 46666654 5765 45555543
No 221
>cd02856 Glycogen_debranching_enzyme_N_term Glycogen_debranching_enzyme N-terminal domain. Glycogen debranching enzymes have both 4-alpha-glucanotransferase and amylo-1,6-glucosidase activities. As a transferase it transfers a segment of a 1,4-alpha-D-glucan to a new 4-position in an acceptor, which may be glucose or another 1,4-alpha-D-glucan. As a glucosidase it catalyzes the endohydrolysis of 1,6-alpha-D-glucoside linkages at points of branching in chains of 1,4-linked alpha-D-glucose residues. The N-terminus of the glycogen debranching enzyme may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=97.03 E-value=0.0022 Score=53.59 Aligned_cols=53 Identities=23% Similarity=0.325 Sum_probs=41.6
Q ss_pred EEEE-ecCCCcEEEEEEccCCCC--CCCCCCccCCCCCeEEEEEE-eCCceEEEEEEECCE
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGE 84 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg~ 84 (512)
++|. |...+++|.|+. |++|. ..++|.+. .+|.|++.+. +.+|. .|+|.|||.
T Consensus 11 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~~--~~GvW~~~v~~~~~g~-~Y~y~i~g~ 67 (103)
T cd02856 11 CNFAVHSENATRIELCL-FDEDGSETRLPLTEE--YGGVWHGFLPGIKAGQ-RYGFRVHGP 67 (103)
T ss_pred eEEEEECCCCCEEEEEE-EeCCCCEEEEEcccc--cCCEEEEEECCCCCCC-EEEEEECCc
Confidence 5675 999999999999 77664 33578763 4799999996 66665 799999994
No 222
>PRK14705 glycogen branching enzyme; Provisional
Probab=97.00 E-value=0.0013 Score=76.64 Aligned_cols=63 Identities=27% Similarity=0.628 Sum_probs=48.6
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEE-eCCceEEEEEEEC---CEE--eeCCCC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GEW--RHDEHQ 91 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VD---g~w--~~d~~~ 91 (512)
-++|. |...+++|+|+|+||+|... .+|.+. ...|+|++.++ +.+|. .|||.|+ |+| +.||..
T Consensus 639 Gv~F~VWAP~A~~V~vvgdFN~w~~~~~~m~~~-~~~GvW~~fipg~~~G~-~Yky~i~~~~g~~~~k~DPyA 709 (1224)
T PRK14705 639 GVSFAVWAPNAQAVRVKGDFNGWDGREHSMRSL-GSSGVWELFIPGVVAGA-CYKFEILTKAGQWVEKADPLA 709 (1224)
T ss_pred eEEEEEECCCCCEEEEEEEecCCCCCcccceEC-CCCCEEEEEECCCCCCC-EEEEEEEcCCCcEEecCCccc
Confidence 56787 99999999999999999875 478763 34699999997 77885 6888884 555 445543
No 223
>PRK14706 glycogen branching enzyme; Provisional
Probab=96.90 E-value=0.0028 Score=70.03 Aligned_cols=64 Identities=31% Similarity=0.604 Sum_probs=48.7
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEEe-CCceEEEEEEECC---EE--eeCCCCCe
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWSI-PPGYHQYKFCVDG---EW--RHDEHQPF 93 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~L-~~g~~~ykf~VDg---~w--~~d~~~~~ 93 (512)
-++|+ |...|++|+|+|+||+|... .||.+. ..|.|++.++- .+| ..|||.|++ .+ +.||-...
T Consensus 39 Gv~FrvwAP~A~~V~Lvgdfn~w~~~~~pM~~~--~~GvW~~~vpg~~~g-~~Yky~I~~~~g~~~~~~DPYa~~ 110 (639)
T PRK14706 39 GVRFAVWAPGAQHVSVVGDFNDWNGFDHPMQRL--DFGFWGAFVPGARPG-QRYKFRVTGAAGQTVDKMDPYGSF 110 (639)
T ss_pred cEEEEEECCCCCEEEEEEecCCccccccccccc--CCCEEEEEECCCCCC-CEEEEEEECCCCCEEeccCcceEE
Confidence 46787 99999999999999999875 588875 35999999974 455 468888854 43 66665543
No 224
>cd05811 CBM20_glucoamylase Glucoamylase (glucan1,4-alpha-glucosidase), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Glucoamylases are inverting, exo-acting starch hydrolases that hydrolyze starch and related polysaccharides by releasing the nonreducing end glucose. They are mainly active on alpha-1,4-glycosidic bonds but also have some activity towards 1,6-glycosidic bonds occurring in natural oligosaccharides. The ability of glucoamylases to cleave 1-6-glycosidic binds is called "debranching activity" and is of importance in industrial applications, where complete degradation of starch to glucose is needed. Most glucoamylases are multidomain proteins containing an N-terminal catalytic domain, a C-terminal CBM20 domain, and a highly O-glycosylated linker region that connects the two. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also
Probab=96.89 E-value=0.013 Score=49.25 Aligned_cols=58 Identities=19% Similarity=0.437 Sum_probs=43.2
Q ss_pred ceeeEEEEe---cCCCcEEEEEEccC---CCCCC--CCCCccC--CCCCeEEEEEEeCCce-EEEEEEE
Q 010368 24 VLIPMRFVW---PYGGRSVFLSGSFN---RWSEL--LPMSPVE--GCPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 24 ~~~~~~f~w---~~~~~~V~l~Gsf~---~W~~~--~~m~~~~--~~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
..++++|.- ...|++|+|+|+-. +|++. ++|.... ..++.|++.+.||+|. ++|||++
T Consensus 5 ~~v~V~F~i~~~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~t~~~~~W~~~v~lp~~~~veYKy~~ 73 (106)
T cd05811 5 TTVAVTFNERVTTSYGENIKIVGSIPQLGNWDTSSAVALSASQYTSSNPLWSVTIPLPAGTSFEYKFIR 73 (106)
T ss_pred CEEEEEEEEeeEcCCCCeEEEEeCcHHHCCCChhhCcccccccCccCCCcEEEEEEeCCCCcEEEEEEE
Confidence 347777763 34579999999865 79864 5775421 1247899999999976 9999997
No 225
>KOG0475 consensus Cl- channel CLC-3 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=96.78 E-value=0.018 Score=61.40 Aligned_cols=134 Identities=12% Similarity=0.121 Sum_probs=94.2
Q ss_pred CceEeCCC-CCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCC-C--cccccCcccccc
Q 010368 290 PLVYAGPN-DNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSS-S--LPILKLPICAIP 365 (512)
Q Consensus 290 ~~i~v~~~-~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~-~--~~~l~~~v~~l~ 365 (512)
+++.+..+ .++.|...+|.+...+..||+-+ +++. .++|++..+++.-.+......... . ......+..+..
T Consensus 557 ~L~~i~~~s~tl~~le~~~~~t~~sgfpvvl~-~~sq---~lvGfv~rr~l~~~i~~ar~~q~~~~~~~~~f~~~~~~~~ 632 (696)
T KOG0475|consen 557 CLIVITQDSMTLEDLESLMEDTDFSGFPVVLS-EDSQ---RLVGFVLRRNLFLAILNARKIQSFIVTTSIYFNDPSPSAV 632 (696)
T ss_pred hheeccccceeHHHHHHHHhhcccCCceEEEc-cccc---eeEEEEchHHHHHHHhhhccccccceecccccCCCCcccc
Confidence 57777666 89999999999999999999853 3333 899999999998777532111000 0 001111222111
Q ss_pred Cccc-ccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 010368 366 VGTW-VPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 428 (512)
Q Consensus 366 ig~~-~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~ 428 (512)
-+.- .-..+++|...+.++...++...+++++.+-+.+.+.|. ++|++.|+||.+|++...+
T Consensus 633 ~~~~~~~~lk~il~~tp~tv~d~tp~~~v~~~F~~lg~~~~~v~-~~G~l~Giitkkd~l~~~r 695 (696)
T KOG0475|consen 633 AGIPSRLDLKDILDMTPFTVTDLTPMETVVDLFRKLGLRQILVT-KNGILLGIITKKDCLRHTR 695 (696)
T ss_pred CCCCCCcCceeeccCCcccccccCcHHHHHHHHHhhCceEEEEc-cCCeeEeeeehHHHHHhhc
Confidence 1111 113456788888999999999999999999999888765 6899999999999988643
No 226
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=96.73 E-value=0.0061 Score=60.17 Aligned_cols=168 Identities=17% Similarity=0.240 Sum_probs=109.4
Q ss_pred CCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCc
Q 010368 288 PRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 367 (512)
Q Consensus 288 ~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig 367 (512)
.+.++.+. ..+.||+++ -++|.++ ++| +++-+=|..+|+..-...+-. .-+..+...
T Consensus 215 ~KTIvFit--HDLdEAlri-----G~rIaim----kdG---~ivQ~Gtp~eIl~~PAndYV~---------~Fv~~v~~~ 271 (386)
T COG4175 215 KKTIVFIT--HDLDEALRI-----GDRIAIM----KDG---EIVQVGTPEEILLNPANDYVR---------DFVRNVDRS 271 (386)
T ss_pred CCeEEEEe--cCHHHHHhc-----cceEEEe----cCC---eEEEeCCHHHHHcCccHHHHH---------HHHhcCChh
Confidence 34444443 346677664 3567777 456 899999999998543322100 001111000
Q ss_pred ccccccCCCCCC--CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHH
Q 010368 368 TWVPKIGEPNRR--PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQA 445 (512)
Q Consensus 368 ~~~~~v~~~m~~--~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~ 445 (512)
.. -+..++|.+ ....-.+...-..++..+.....+.+.+++..++.+|+++..++... .
T Consensus 272 ~V-ltA~~IM~~~~~~~~~~~~~~~~~al~~~~~~~~~~~~~~~~~~~~~g~v~~~~~~~~------------------~ 332 (386)
T COG4175 272 RV-LTAKDIMRRPDLLIRKTPGDGPRVALKLLRDEGREYGYAVDRGNKFVGVVSIDSLVKA------------------A 332 (386)
T ss_pred he-eeHHHhhcccccccccccccccchhhhhhhhccchhhHHHhccCceeeEEeccchhcc------------------c
Confidence 00 023344652 22222223334567888888888788888878889999998887653 1
Q ss_pred HhcCCCCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHHhhC
Q 010368 446 LQLGQDSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKFLLG 512 (512)
Q Consensus 446 l~~~~~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ll~ 512 (512)
+ ..++.++..++++.+.+..+.+... .++|||+ +++++|+|+...++.+|.+
T Consensus 333 ~-------------~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde-~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 L-------------IDDVLTVDADTPLSEILARIRQAPC-PVAVVDE-DGRYVGIISRGELLEALAR 384 (386)
T ss_pred c-------------cccccccCccchHHHHHHHHhcCCC-ceeEEcC-CCcEEEEecHHHHHHHHhc
Confidence 1 3457788899999999999888886 5889996 9999999999999999864
No 227
>cd05813 CBM20_genethonin_1 Genethonin-1, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Genethonin-1 is a human skeletal muscle protein with no known function. It contains a C-terminal CBM20 domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.71 E-value=0.0061 Score=50.11 Aligned_cols=53 Identities=19% Similarity=0.404 Sum_probs=41.0
Q ss_pred eEEEE--ec--CCCcEEEEEEccC---CCCCCCCCCccCCCCCeEEEEEEeCCce-EEEEEEE
Q 010368 27 PMRFV--WP--YGGRSVFLSGSFN---RWSELLPMSPVEGCPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 27 ~~~f~--w~--~~~~~V~l~Gsf~---~W~~~~~m~~~~~~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
+++|. .+ .+++.++|+|+=. +|+...+|... ..+.|++.+.||++. ++|||++
T Consensus 2 ~v~F~v~~~t~~~~e~l~v~G~~~~LG~W~~~~~l~~~--~~~~W~~~v~lp~~~~ieYky~~ 62 (95)
T cd05813 2 NVTFRVHYITHSDAQLVAVTGDHEELGSWHSYIPLQYV--KDGFWSASVSLPVDTHVEWKFVL 62 (95)
T ss_pred eEEEEEEeeeCCCCeEEEEEcChHHHCCCCccccCcCC--CCCCEEEEEEecCCCcEEEEEEE
Confidence 44554 33 3568889999764 79987898753 357899999999986 9999998
No 228
>cd05807 CBM20_CGTase CGTase, C-terminal CBM20 (carbohydrate-binding module, family 20) domain. CGTase, also known as cyclodextrin glycosyltransferase and cyclodextrin glucanotransferase, catalyzes the formation of various cyclodextrins (alpha-1,4-glucans) from starch. CGTase has, in addition to its C-terminal CBM20 domain, an N-terminal catalytic domain belonging to glycosyl hydrolase family 13 and an IPT domain of unknown function. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific
Probab=96.65 E-value=0.011 Score=49.27 Aligned_cols=57 Identities=23% Similarity=0.270 Sum_probs=41.9
Q ss_pred eeeEEEEec----CCCcEEEEEEccC---CCCCCC--CCCcc--CCCCCeEEEEEEeCCce-EEEEEEE
Q 010368 25 LIPMRFVWP----YGGRSVFLSGSFN---RWSELL--PMSPV--EGCPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 25 ~~~~~f~w~----~~~~~V~l~Gsf~---~W~~~~--~m~~~--~~~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
.++++|.-. ..|++|+|+||-. +|++.. .|... ......|++.+.||.|. ++|||++
T Consensus 2 ~v~v~f~v~~~~t~~Gq~l~v~Gs~~~LG~W~~~~a~~~~~~~~~~~~~~W~~~~~lp~~~~~eyK~~~ 70 (101)
T cd05807 2 QVSVRFVVNNATTQLGENVYLVGNVHELGNWDPSKAIGPFFNQVVYQYPNWYYDVSVPAGTTIEFKFIK 70 (101)
T ss_pred cEEEEEEEeccccCCCCEEEEEECHHHHCCCChHHccccccccCCCcCCcEEEEEEcCCCCcEEEEEEE
Confidence 477888853 2479999999875 898753 23211 12356899999999986 9999998
No 229
>cd05810 CBM20_alpha_MTH Glucan 1,4-alpha-maltotetraohydrolase (alpha-MTH), C-terminal CBM20 (carbohydrate-binding module, family 20) domain. Alpha-MTH, also known as maltotetraose-forming exo-amylase or G4-amylase, is an exo-amylase found in bacteria that degrades starch from its non-reducing end. Most alpha-MTHs have, in addition to the C-terminal CBM20 domain, an N-terminal glycosyl hydrolase family 13 catalytic domain. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognitio
Probab=96.62 E-value=0.012 Score=48.69 Aligned_cols=54 Identities=20% Similarity=0.386 Sum_probs=41.2
Q ss_pred eeEEEE----ecCCCcEEEEEEccC---CCCCC--CCCCccCCCCCeEEEEEEeCCce-EEEEEEE
Q 010368 26 IPMRFV----WPYGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 26 ~~~~f~----w~~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
|+++|. ....|+.|+|+|+-. +|++. ++|... ....|++.+.||.|. .+|||++
T Consensus 1 v~v~f~~~~~~t~~Ge~l~v~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~lp~~~~veyKyv~ 64 (97)
T cd05810 1 VSVTFSCNNGTTQLGQSVYVVGNVPQLGNWSPADAVKLDPT--AYPTWSGSISLPASTNVEWKCLK 64 (97)
T ss_pred CeEEEEEeecccCCCCeEEEEEChHHhCCCChhhcccccCC--CCCeEEEEEEcCCCCeEEEEEEE
Confidence 456666 233579999999876 89864 466543 457899999999985 9999988
No 230
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.56 E-value=0.006 Score=68.80 Aligned_cols=64 Identities=27% Similarity=0.539 Sum_probs=47.5
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEE-eCCc-eEEEEEEEC-CEE--eeCCCC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPG-YHQYKFCVD-GEW--RHDEHQ 91 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~-L~~g-~~~ykf~VD-g~w--~~d~~~ 91 (512)
.++|+ |...|++|.|+|+||+|... .+|.+. ...|.|++.++ +++| .|.|++..+ |.| +.||-.
T Consensus 132 gv~FrvwAP~A~~V~l~gdfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~~Y~y~v~~~~g~~~~~~DPYa 202 (726)
T PRK05402 132 GVRFAVWAPNARRVSVVGDFNGWDGRRHPMRLR-GESGVWELFIPGLGEGELYKFEILTADGELLLKADPYA 202 (726)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCCccccceEc-CCCCEEEEEeCCCCCCCEEEEEEeCCCCcEeecCCCce
Confidence 57888 99999999999999999764 588764 24699999986 5666 566666654 454 444443
No 231
>cd05816 CBM20_DPE2_repeat2 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 2. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal CBM20 domains. Included in this group are PDE2-like proteins from Dictyostelium, Entamoeba, and Bacteroides. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in star
Probab=96.49 E-value=0.029 Score=46.48 Aligned_cols=46 Identities=26% Similarity=0.476 Sum_probs=37.2
Q ss_pred CCCcEEEEEEcc---CCCCCC--CCCCccCCCCCeEEEEEEeCCc--eEEEEEEE
Q 010368 34 YGGRSVFLSGSF---NRWSEL--LPMSPVEGCPTVFQIIWSIPPG--YHQYKFCV 81 (512)
Q Consensus 34 ~~~~~V~l~Gsf---~~W~~~--~~m~~~~~~~~~f~~~~~L~~g--~~~ykf~V 81 (512)
..|++|+|+|+- .+|++. ++|... ....|++.+.+|++ .++|||++
T Consensus 12 ~~Ge~v~i~Gs~~~LG~W~~~~a~~l~~~--~~~~W~~~v~~p~~~~~ieYKyvi 64 (99)
T cd05816 12 PKGQSVYVTGSSPELGNWDPQKALKLSDV--GFPIWEADIDISKDSFPFEYKYII 64 (99)
T ss_pred CCCCEEEEEEChHHhCCCCccccccCCCC--CCCcEEEEEEeCCCCccEEEEEEE
Confidence 458999999986 589864 578763 35789999999986 59999998
No 232
>cd02853 MTHase_N_term Maltooligosyl trehalose synthase (MTSase) N-terminus domain. MTSase and maltooligosyl trehalose trehalohydrolase (MTHase) work together to produce trehalose. MTSase is responsible for converting the alpha-1,4-glucosidic linkage to an alpha,alpha-1,1-glucosidic linkage at the reducing end of the maltooligosaccharide through an intramolecular transglucosylation reaction, while MTHase hydrolyzes the penultimate alpha-1,4 linkage of the reducing end, resulting in the release of trehalose. The N-terminus of MTSase may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of this family include members of the alpha amylase family, sialidase, galactose oxidase, cellulase, cellulose, hyaluronate lyase, chitobiase, and chitinase.
Probab=96.35 E-value=0.02 Score=45.99 Aligned_cols=60 Identities=23% Similarity=0.288 Sum_probs=45.2
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEEC-CEEeeCCCCCe
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVD-GEWRHDEHQPF 93 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~VD-g~w~~d~~~~~ 93 (512)
++|. |...+++|.|...+ |. ..+|.+. .+|.|++.+.--+|. .|+|.|+ +..+.||....
T Consensus 10 ~~F~vwAP~A~~V~l~l~~--~~-~~~m~~~--~~G~W~~~v~~~~g~-~Y~y~v~~~~~~~DP~a~~ 71 (85)
T cd02853 10 TRFRLWAPDAKRVTLRLDD--GE-EIPMQRD--GDGWFEAEVPGAAGT-RYRYRLDDGTPVPDPASRF 71 (85)
T ss_pred EEEEEeCCCCCEEEEEecC--CC-cccCccC--CCcEEEEEeCCCCCC-eEEEEECCCcCCCCCcccc
Confidence 5676 99999999999743 54 4688763 469999999844665 5778877 46888887764
No 233
>cd05467 CBM20 The family 20 carbohydrate-binding module (CBM20), also known as the starch-binding domain, is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.35 E-value=0.016 Score=47.55 Aligned_cols=49 Identities=22% Similarity=0.450 Sum_probs=39.0
Q ss_pred ecCCCcEEEEEEccC---CCCCC--CCCCccCCCCCeEEEEEEeCC--c-eEEEEEEE
Q 010368 32 WPYGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPP--G-YHQYKFCV 81 (512)
Q Consensus 32 w~~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~f~~~~~L~~--g-~~~ykf~V 81 (512)
....|++++|+|+.. +|++. ++|...+ .++.|++.+.+|+ | .++|||++
T Consensus 9 ~t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~-~~~~W~~~v~~~~~~~~~~~yKy~~ 65 (96)
T cd05467 9 TTQFGQSVYVVGSHPELGNWDPAKALRLNTSN-SYPLWTGEIPLPAPEGQVIEYKYVI 65 (96)
T ss_pred ECCCCCEEEEEeCcHHhCCcChhcCccccCCC-CCCcEEEEEEecCCCCCeEEEEEEE
Confidence 345689999999986 89853 5776643 2578999999999 7 59999998
No 234
>PRK05402 glycogen branching enzyme; Provisional
Probab=96.10 E-value=0.011 Score=66.70 Aligned_cols=61 Identities=13% Similarity=0.132 Sum_probs=45.5
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEE--CCE--EeeCCC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV--DGE--WRHDEH 90 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~V--Dg~--w~~d~~ 90 (512)
-++|. |.+.|++|+|+|+||+ ....||.+.+ ..|.|++.+++..|.. |||.| ||+ .+.||-
T Consensus 29 g~~f~vwaP~A~~V~vvgdfn~-~~~~~m~~~~-~~G~w~~~ip~~~g~~-YKy~i~~~g~~~~k~DPy 94 (726)
T PRK05402 29 GLVVRALLPGAEEVWVILPGGG-RKLAELERLH-PRGLFAGVLPRKGPFD-YRLRVTWGGGEQLIDDPY 94 (726)
T ss_pred cEEEEEECCCCeEEEEEeecCC-CccccceEcC-CCceEEEEecCCCCCC-eEEEEEeCCceeEecccc
Confidence 46776 9999999999999997 3345898753 4699999999666743 66655 785 455553
No 235
>cd05817 CBM20_DSP Dual-specificity phosphatase (DSP), N-terminal CBM20 (carbohydrate-binding module, family 20) domain. This CBM20 domain is located at the N-terminus of a protein tyrosine phosphatase of unknown function found in slime molds and ciliated protozoans. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabolism in mammals (e.g. laforin). CBM20 folds as an antiparallel beta-barrel structure with two starch binding sites. These two sites are thought to differ functionally with site 1 acting as the initial starch recognition site and site 2 involved in the specific recognition of appropriate regions of starch.
Probab=96.09 E-value=0.029 Score=46.53 Aligned_cols=47 Identities=23% Similarity=0.415 Sum_probs=37.8
Q ss_pred cCCCcEEEEEEc---cCCCCCC--CCCCccCCCCCeEEEEEEeCCce-EEEEEEE
Q 010368 33 PYGGRSVFLSGS---FNRWSEL--LPMSPVEGCPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 33 ~~~~~~V~l~Gs---f~~W~~~--~~m~~~~~~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
...|+.++|+|+ ..+|++. ++|... .+..|++.+.||+|. ++|||++
T Consensus 10 t~~Ge~l~v~Gs~~~LG~W~~~~a~~m~~~--~~~~W~~~v~lp~~~~veYKY~i 62 (100)
T cd05817 10 TQFGEAVYISGNCNQLGNWNPSKAKRMQWN--EGDLWTVDVGIPESVYIEYKYFV 62 (100)
T ss_pred cCCCCEEEEEeCcHHHCCCCccccCcccCC--CCCCEEEEEEECCCCcEEEEEEE
Confidence 445799999999 5689864 477653 356899999999874 9999998
No 236
>TIGR01515 branching_enzym alpha-1,4-glucan:alpha-1,4-glucan 6-glycosyltransferase. A sequence from Arabidopsis thaliana, GP|9294564, scores just above trusted, but appears either to contain corrupt sequence or, more likely, to be a pseudogene as some of the conserved catalytic residues common to the alpha amylase family are not conserved here.
Probab=96.00 E-value=0.03 Score=61.99 Aligned_cols=64 Identities=28% Similarity=0.508 Sum_probs=47.8
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-CCCCccCCCCCeEEEEEE-eCCceEEEEEEEC---CE--EeeCCCCC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD---GE--WRHDEHQP 92 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VD---g~--w~~d~~~~ 92 (512)
-++|+ |.+.|++|.|+|+||+|... .+|.+. ...|.|++.++ +.+|. .|||.|+ |. ++.||...
T Consensus 29 g~~FrvwAP~A~~V~L~~dfn~w~~~~~~m~~~-~~~Gvw~~~i~~~~~g~-~Y~y~v~~~~g~~~~~~DPYA~ 100 (613)
T TIGR01515 29 GTRFCVWAPNAREVRVAGDFNYWDGREHPMRRR-NDNGIWELFIPGIGEGE-LYKYEIVTNNGEIRLKADPYAF 100 (613)
T ss_pred cEEEEEECCCCCEEEEEEecCCCCCceecceEe-cCCCEEEEEeCCCCCCC-EEEEEEECCCCcEEEeCCCCEe
Confidence 46777 99999999999999999765 477763 23699999987 35565 5888884 54 46676554
No 237
>TIGR02402 trehalose_TreZ malto-oligosyltrehalose trehalohydrolase. Members of this family are the trehalose biosynthetic enzyme malto-oligosyltrehalose trehalohydrolase, formally known as 4-alpha-D-{(1-4)-alpha-D-glucano}trehalose trehalohydrolase (EC 3.2.1.141). It is the TreZ protein of the TreYZ pathway for trehalose biosynthesis, and alternative to the OtsAB system.
Probab=95.73 E-value=0.03 Score=60.96 Aligned_cols=61 Identities=25% Similarity=0.314 Sum_probs=48.5
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEE-eCCceEEEEEEECC-EEeeCCCCCeee
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDG-EWRHDEHQPFIS 95 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg-~w~~d~~~~~~~ 95 (512)
++|+ |...+++|.|++. + +..+|.+. ..|+|+++++ +.+| +.|+|.||| ..+.||......
T Consensus 1 v~FrlwAP~A~~V~L~l~---~-~~~~m~k~--~~GvW~~~v~~~~~G-~~Y~y~v~g~~~v~DPya~~~~ 64 (542)
T TIGR02402 1 VRFRLWAPTAASVKLRLN---G-ALHAMQRL--GDGWFEITVPPVGPG-DRYGYVLDDGTPVPDPASRRQP 64 (542)
T ss_pred CEEEEECCCCCEEEEEeC---C-CEEeCeEC--CCCEEEEEECCCCCC-CEEEEEEeeeEEecCccccccc
Confidence 4675 9999999999973 3 34689874 4699999998 7778 789999999 678888777543
No 238
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=95.66 E-value=0.036 Score=60.23 Aligned_cols=59 Identities=10% Similarity=0.186 Sum_probs=50.1
Q ss_pred CcCCCCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhc
Q 010368 285 KAFPRPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYF 347 (512)
Q Consensus 285 ~~~~~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~ 347 (512)
+.|-+++..+..+.|..|.-+.+....++.+|+|++ .++- .++|.+..+.+...+.++.
T Consensus 592 ~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s-~esm---iLlGSV~R~~L~~ll~~~i 650 (931)
T KOG0476|consen 592 HIMVTDVKYITKDTTYRELREALQTTTLRSFPLVES-KESM---ILLGSVARRYLTALLQRHI 650 (931)
T ss_pred eeccccceeeeccCcHHHHHHHHHhCccceeccccC-cccc---eeeehhHHHHHHHHHHhhc
Confidence 468999999999999999988887777999999974 3443 7999999999999987754
No 239
>PF03423 CBM_25: Carbohydrate binding domain (family 25); InterPro: IPR005085 A carbohydrate-binding module (CBM) is defined as a contiguous amino acid sequence within a carbohydrate-active enzyme with a discreet fold having carbohydrate-binding activity. A few exceptions are CBMs in cellulosomal scaffolding proteins and rare instances of independent putative CBMs. The requirement of CBMs existing as modules within larger enzymes sets this class of carbohydrate-binding protein apart from other non-catalytic sugar binding proteins such as lectins and sugar transport proteins. CBMs were previously classified as cellulose-binding domains (CBDs) based on the initial discovery of several modules that bound cellulose [, ]. However, additional modules in carbohydrate-active enzymes are continually being found that bind carbohydrates other than cellulose yet otherwise meet the CBM criteria, hence the need to reclassify these polypeptides using more inclusive terminology. Previous classification of cellulose-binding domains were based on amino acid similarity. Groupings of CBDs were called "Types" and numbered with roman numerals (e.g. Type I or Type II CBDs). In keeping with the glycoside hydrolase classification, these groupings are now called families and numbered with Arabic numerals. Families 1 to 13 are the same as Types I to XIII. For a detailed review on the structure and binding modes of CBMs see []. This entry represents CBM25 from CAZY which has a starch-binding function as has been demonstrated in one case.; PDB: 2LAB_A 2C3X_B 2C3V_A 2C3W_C 2LAA_A.
Probab=95.51 E-value=0.039 Score=44.54 Aligned_cols=52 Identities=27% Similarity=0.578 Sum_probs=33.3
Q ss_pred CCcEEEEEEccCCCCCC--CCCCccC--CCCCeEEEEEEeCCceEEEEEEE-CC--EEe
Q 010368 35 GGRSVFLSGSFNRWSEL--LPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV-DG--EWR 86 (512)
Q Consensus 35 ~~~~V~l~Gsf~~W~~~--~~m~~~~--~~~~~f~~~~~L~~g~~~ykf~V-Dg--~w~ 86 (512)
++.+|++.+.||+|+.. .+|.++. ...+.|++++.+|..-|+..|+- || .|-
T Consensus 17 g~~~v~~~~G~n~W~~~~~~~m~~~~~~~~~~~~~~tv~vP~~a~~~dfvF~dg~~~wD 75 (87)
T PF03423_consen 17 GAPNVHLHGGFNRWTHVPGFGMTKMCVPDEGGWWKATVDVPEDAYVMDFVFNDGAGNWD 75 (87)
T ss_dssp -S-EEEEEETTS-B-SSS-EE-EEESS---TTEEEEEEE--TTTSEEEEEEE-SSS-EE
T ss_pred CCCcEEEEecCCCCCcCCCCCcceeeeeecCCEEEEEEEEcCCceEEEEEEcCCCCcEe
Confidence 46889999999999875 3566542 12689999999999988888887 65 563
No 240
>cd05806 CBM20_laforin Laforin protein tyrosine phosphatase, N-terminal CBM20 (carbohydrate-binding module, family 20) domain. Laforin, encoded by the EPM2A gene, is a dual-specificity phosphatase that dephosphorylates complex carbohydrates. Mutations in the gene encoding laforin result in Lafora disease, a fatal autosomal recessive neurodegenerative disorder characterized by the presence of intracellular deposits of insoluble, abnormally branched, glycogen-like polymers, known as Lafora bodies, in neurons, muscle, liver, and other tissues. The molecular basis for the formation of these Lafora bodies is unknown. Laforin is one of the only phosphatases that contains a carbohydrate-binding module. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen
Probab=95.37 E-value=0.21 Score=42.32 Aligned_cols=51 Identities=20% Similarity=0.356 Sum_probs=39.1
Q ss_pred EecCCCcEEEEEEcc---CCCCCC--CCCCccC-----CCCCeEEEEEEeCCc----eEEEEEEE
Q 010368 31 VWPYGGRSVFLSGSF---NRWSEL--LPMSPVE-----GCPTVFQIIWSIPPG----YHQYKFCV 81 (512)
Q Consensus 31 ~w~~~~~~V~l~Gsf---~~W~~~--~~m~~~~-----~~~~~f~~~~~L~~g----~~~ykf~V 81 (512)
+....+++++|+|+= -+|+.. ++|.... ..+..|++.+.||+| .++|||+.
T Consensus 10 ~~~~~gq~v~IvGsipeLG~Wd~~~Av~Ls~~~yt~~~~~~~~W~~~v~lp~~~~~~~~eYKfv~ 74 (112)
T cd05806 10 TFADRDTELLVLGSRPELGSWDPQRAVPMRPARKALSPQEPSLWLGEVELSEPGSEDTFWYKFLK 74 (112)
T ss_pred eecCCCCEEEEEECchhcCCCCcccccccccccccccCCCCCEEEEEEEcCCCCcCceEEEEEEE
Confidence 466778999999975 589865 4666531 134579999999996 69999997
No 241
>cd05815 CBM20_DPE2_repeat1 Disproportionating enzyme 2 (DPE2), N-terminal CBM20 (carbohydrate-binding module, family 20) domain, repeat 1. DPE2 is a transglucosidase that is essential for the cytosolic metabolism of maltose in plant leaves at night. Maltose is an intermediate on the pathway from starch to sucrose and DPE2 is thought to metabolize the maltose that is exported from the chloroplast. DPE2 has two N-terminal CBM20 starch binding domains as well as a C-terminal amylomaltase (4-alpha-glucanotransferase) catalytic domain. DPE1, the plastid version of this enzyme, has a transglucosidase domain that is similar to that of DPE2 but lacks the N-terminal carbohydrate-binding domains. The CBM20 domain is found in a large number of starch degrading enzymes including alpha-amylase, beta-amylase, glucoamylase, and CGTase (cyclodextrin glucanotransferase). CBM20 is also present in proteins that have a regulatory role in starch metabolism in plants (e.g. alpha-amylase) or glycogen metabol
Probab=94.72 E-value=0.12 Score=42.79 Aligned_cols=49 Identities=31% Similarity=0.601 Sum_probs=36.6
Q ss_pred cCCCcEEEEEEccC---CCCCC--CCCCcc-CCCCCeEEEEEEeCCce-EEEEEEE
Q 010368 33 PYGGRSVFLSGSFN---RWSEL--LPMSPV-EGCPTVFQIIWSIPPGY-HQYKFCV 81 (512)
Q Consensus 33 ~~~~~~V~l~Gsf~---~W~~~--~~m~~~-~~~~~~f~~~~~L~~g~-~~ykf~V 81 (512)
...|++++|+|+-. +|++. .+|... ......|++.+.+|++. ++|||+|
T Consensus 10 t~~Ge~l~v~G~~~~LG~W~~~~a~~m~~~~~~~~~~W~~~v~~~~~~~veYky~v 65 (101)
T cd05815 10 TQWGQSLLICGSDPLLGSWNVKKGLLLKPSHQGDVLVWSGSISVPPGFSSEYNYYV 65 (101)
T ss_pred ccCCCEEEEEcChHHcCCcChHhcEeeeecCCCCCCEEEEEEEeCCCCcEEEEEEE
Confidence 34479999999864 79764 477542 12234899999999975 9999999
No 242
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=94.71 E-value=0.2 Score=48.44 Aligned_cols=112 Identities=17% Similarity=0.224 Sum_probs=72.5
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccc--------cc-cCcccccHHHHHhcCC
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAY--------AH-INLSEMTIHQALQLGQ 450 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~--------~~-l~~~~~~v~~~l~~~~ 450 (512)
.++.++.| +.||+++- .++.|.+ +|+++-+-+..+++.-.++.-. .. ..+...++.+.+....
T Consensus 188 TivfVTHD--idEA~kLa-----dri~vm~-~G~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~~~~~~~~~~ 259 (309)
T COG1125 188 TIVFVTHD--IDEALKLA-----DRIAVMD-AGEIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVSVADAVRRGE 259 (309)
T ss_pred EEEEEecC--HHHHHhhh-----ceEEEec-CCeEEEeCCHHHHHhCccHHHHHHHhccccccccccchhhHHHhhcccc
Confidence 45666666 88888765 3588887 7999999998888753322100 00 1112334444442211
Q ss_pred CCCCCccccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 451 DSYSPYELRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 451 ~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
. ..--.+.......+++..+...+...+||||+ +|+++|.||..+|+..
T Consensus 260 ~---------~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~-~g~~~G~vt~~~l~~~ 308 (309)
T COG1125 260 P---------ADGEPLLEGFVDRDALSDFLARGRSVLPVVDE-DGRPLGTVTRADLLDE 308 (309)
T ss_pred c---------ccCCccccchhhHHHHHHHHhcCCceeEEECC-CCcEeeEEEHHHHhhh
Confidence 0 01111233445556888889999999999996 9999999999999875
No 243
>PLN02960 alpha-amylase
Probab=93.97 E-value=0.054 Score=60.89 Aligned_cols=56 Identities=27% Similarity=0.481 Sum_probs=41.6
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCCC-CCCc--cC-CCCCeEEEEEE--eCCce-------EEEEEEEC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSELL-PMSP--VE-GCPTVFQIIWS--IPPGY-------HQYKFCVD 82 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~~-~m~~--~~-~~~~~f~~~~~--L~~g~-------~~ykf~VD 82 (512)
-+.|. |..||+.++|+|+||||++.. +|.+ .. ..-|+|.++++ |..|. -||.|..|
T Consensus 129 ~~~~~~wap~a~~~~~~gdfn~w~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 198 (897)
T PLN02960 129 RVDFMEWAPGARYCSLVGDFNNWSPTENRAREGYFGHDDFGYWFIILEDKLREGEEPDELYFQEYNYVDD 198 (897)
T ss_pred CeEEEEEcCCceeEEEeecccCCCcccchhhcccccccccceEEEEechhhhcCCCcchhhhhhhccccc
Confidence 45565 999999999999999999874 4431 00 22489999998 77774 36888774
No 244
>TIGR02104 pulA_typeI pullulanase, type I. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family consists of pullulanases related to the subfamilies described in TIGR02102 and TIGR02103 but having a different domain architecture with shorter sequences. Members are called type I pullulanases.
Probab=93.94 E-value=0.13 Score=57.02 Aligned_cols=62 Identities=19% Similarity=0.233 Sum_probs=45.3
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCC-----CCCCCccCCCCCeEEEEEE-eCCceEEEEEEE--CCE--EeeCCCCCe
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSE-----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCV--DGE--WRHDEHQPF 93 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~-----~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~V--Dg~--w~~d~~~~~ 93 (512)
++|. |...+++|.|++ |++|.. .++|.+. ..|+|++.++ +.+|. .|+|.| +|. ++.||....
T Consensus 21 ~~F~vwaP~a~~V~l~~-~~~~~~~~~~~~~~m~~~--~~gvw~~~i~~~~~g~-~Y~y~v~~~~~~~~~~DPya~~ 93 (605)
T TIGR02104 21 TVFRVWAPTATEVELLL-YKSGEDGEPYKVVKMKRG--ENGVWSAVLEGDLHGY-FYTYQVCINGKWRETVDPYAKA 93 (605)
T ss_pred eEEEEECCCCCEEEEEE-EcCCCCCccceEEecccC--CCCEEEEEECCCCCCC-EEEEEEEcCCCeEEEcCCCcce
Confidence 6787 999999999998 888853 3478763 4699999998 45554 355555 565 588887653
No 245
>PLN02316 synthase/transferase
Probab=93.30 E-value=0.36 Score=55.90 Aligned_cols=59 Identities=14% Similarity=0.285 Sum_probs=45.0
Q ss_pred eeEEEEecC------CCcEEEEEEccCCCCCCC----CCCccC-CCCCeEEEEEEeCCceEEEEEEE-CCE
Q 010368 26 IPMRFVWPY------GGRSVFLSGSFNRWSELL----PMSPVE-GCPTVFQIIWSIPPGYHQYKFCV-DGE 84 (512)
Q Consensus 26 ~~~~f~w~~------~~~~V~l~Gsf~~W~~~~----~m~~~~-~~~~~f~~~~~L~~g~~~ykf~V-Dg~ 84 (512)
-++++.|+. ++.+|++.|.||+|+... .|.+.+ +.++.|.+++.+|+.-|-.-|+. ||.
T Consensus 329 ~~v~lyYN~~~~~L~~~~~v~i~gg~N~W~~~~~~~~~~~~~~~~~g~ww~a~v~vP~~A~~mDfVFsdg~ 399 (1036)
T PLN02316 329 DTVKLYYNRSSGPLAHSTEIWIHGGYNNWIDGLSIVEKLVKSEEKDGDWWYAEVVVPERALVLDWVFADGP 399 (1036)
T ss_pred CEEEEEECCCCCCCCCCCcEEEEEeEcCCCCCCcccceeecccCCCCCEEEEEEecCCCceEEEEEEecCC
Confidence 467778874 358999999999998642 233333 24569999999999999999987 663
No 246
>TIGR03415 ABC_choXWV_ATP choline ABC transporter, ATP-binding protein. Members of this protein family are the ATP-binding subunit of a three-protein transporter. This family belongs, more broadly, to the family of proline and glycine-betaine transporters, but members have been identified by direct characterization and by bioinformatic means as choline transporters. Many species have several closely-related members of this family, probably with variable abilities to act additionally on related quaternary amines.
Probab=93.00 E-value=0.34 Score=50.38 Aligned_cols=47 Identities=11% Similarity=0.190 Sum_probs=40.2
Q ss_pred CceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHh
Q 010368 380 PLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAK 428 (512)
Q Consensus 380 ~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~ 428 (512)
...++++++++.+++..+.+.+. -++|+|+ |+++|+|++.+++..+.
T Consensus 334 ~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~-~~~~g~~~~~~~~~~~~ 380 (382)
T TIGR03415 334 APTVINPDTLMRDVLAARHRTGG-AILLVEN-GRIVGVIGDDNIYHALL 380 (382)
T ss_pred cCcccCCCCcHHHHHHHHhcCCC-CeEEeeC-CeEEEEEeHHHHHHHHh
Confidence 46688999999999999888765 5888885 99999999999988654
No 247
>COG4175 ProV ABC-type proline/glycine betaine transport system, ATPase component [Amino acid transport and metabolism]
Probab=92.69 E-value=0.24 Score=49.29 Aligned_cols=95 Identities=14% Similarity=0.236 Sum_probs=71.3
Q ss_pred CCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcccccccC
Q 010368 295 GPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGTWVPKIG 374 (512)
Q Consensus 295 ~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~~~~~v~ 374 (512)
.+...-..++..+.......+.+++ ..+ +.+|+++..++.++.
T Consensus 290 ~~~~~~~~al~~~~~~~~~~~~~~~---~~~---~~~g~v~~~~~~~~~------------------------------- 332 (386)
T COG4175 290 TPGDGPRVALKLLRDEGREYGYAVD---RGN---KFVGVVSIDSLVKAA------------------------------- 332 (386)
T ss_pred ccccccchhhhhhhhccchhhHHHh---ccC---ceeeEEeccchhccc-------------------------------
Confidence 3344555678888888877777773 333 689999888876430
Q ss_pred CCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc
Q 010368 375 EPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD 429 (512)
Q Consensus 375 ~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~ 429 (512)
+..++.++..++++.+.+..+.+... .++|+|++++++|++++..++.++..
T Consensus 333 --~~~~~~~v~~d~~~~~~~~~~~~~~~-p~aVvde~~r~vG~i~~~~vl~aL~~ 384 (386)
T COG4175 333 --LIDDVLTVDADTPLSEILARIRQAPC-PVAVVDEDGRYVGIISRGELLEALAR 384 (386)
T ss_pred --ccccccccCccchHHHHHHHHhcCCC-ceeEEcCCCcEEEEecHHHHHHHHhc
Confidence 23356678899999999888876554 78999999999999999999987643
No 248
>PF11806 DUF3327: Domain of unknown function (DUF3327); InterPro: IPR021764 This entry represents the N-terminal domain of enterochelin esterase. The activity of the enzyme has been characterised [, ]. Fes catalyses the hydrolysis of the 2,3-dihydroxy-N-benzoyl-L-serine trimer, enterochelin, forming 2,3-dihydroxybenzoylserine. It also catalyses hydrolysis of free enterobactin and ferric enterobactin. Upon hydrolysis of ferric enterobactin by Fes, released iron is probably reduced by a second enzyme. Enterochelin esterase represents a family of non-peptidase homologues belonging to the MEROPS peptidase family S9, clan SC. ; GO: 0005506 iron ion binding, 0008849 enterochelin esterase activity, 0006826 iron ion transport, 0005737 cytoplasm; PDB: 3MGA_B 3C87_B 3C8H_B 3C8D_A 2B20_A.
Probab=92.19 E-value=1 Score=38.84 Aligned_cols=84 Identities=20% Similarity=0.376 Sum_probs=54.6
Q ss_pred eeEEEEec----CCCcEEEEEEccCCCCCC-----CCCCccCCCCCeEEEEEEeCCc-eEEEEEEECCE--------E--
Q 010368 26 IPMRFVWP----YGGRSVFLSGSFNRWSEL-----LPMSPVEGCPTVFQIIWSIPPG-YHQYKFCVDGE--------W-- 85 (512)
Q Consensus 26 ~~~~f~w~----~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~f~~~~~L~~g-~~~ykf~VDg~--------w-- 85 (512)
+-|+|.|. .....+.|.|+.|++... ..|.+.++ ..+|..++.||.+ +-.|+|+.+-. |
T Consensus 2 ~~VTFlWRdp~~~~~~~~~V~~~~ngvtD~~~~~~~~l~Rl~g-TDVW~~t~~lp~d~rgSY~~~p~~~~~~~~~r~~~r 80 (122)
T PF11806_consen 2 CLVTFLWRDPDEGASANVRVYGDINGVTDHHDPDPQSLQRLPG-TDVWYWTYRLPADWRGSYSFIPDVPDARGAQREWWR 80 (122)
T ss_dssp -EEEEEEE-TSTTT----EEEEEETTTTCGGGT---BEEE-TT-SSEEEEEEEEETT-EEEEEEEEES-T-HHHHHHHHH
T ss_pred cEEEEEEeCCCCCCCceeEEEEECCcccccccCChhhheeCCC-CceEEEEEEECcccEEEEEEEecCcccchhHHHHHH
Confidence 35899999 445789999999999543 36777654 4799999999997 57899997433 2
Q ss_pred ------eeCCCCCee-eCC---CCCeeeEEEeeCC
Q 010368 86 ------RHDEHQPFI-SSE---YGIVNTVLLATEP 110 (512)
Q Consensus 86 ------~~d~~~~~~-~d~---~G~~nn~~~v~~~ 110 (512)
+.||-+|.. ... .|..-++++..+.
T Consensus 81 ~~l~~~~~DPlNp~~~~~~~~~~g~~~S~l~Lp~A 115 (122)
T PF11806_consen 81 AILAQAQADPLNPRPWPNGAQDRGNAASVLELPDA 115 (122)
T ss_dssp HHGGG-B--TTSSSEEE-TT---SSEEEEEE-TTS
T ss_pred HHHhccCCCCCCCCCCCCCccccccccCceeCCCC
Confidence 678888854 333 4788888887643
No 249
>PLN02316 synthase/transferase
Probab=91.86 E-value=0.61 Score=54.12 Aligned_cols=65 Identities=17% Similarity=0.324 Sum_probs=49.6
Q ss_pred eEEEEecCC------CcEEEEEEccCCCCCC---CCCCccCCCCCeEEEEEEeCCceEEEEEEE-CCE--EeeCCCC
Q 010368 27 PMRFVWPYG------GRSVFLSGSFNRWSEL---LPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-DGE--WRHDEHQ 91 (512)
Q Consensus 27 ~~~f~w~~~------~~~V~l~Gsf~~W~~~---~~m~~~~~~~~~f~~~~~L~~g~~~ykf~V-Dg~--w~~d~~~ 91 (512)
++++.|+.. ..+|.|.|.||+|... .+|.|.+..+++|++.+.+|++-|..-|+. ||. |-.+..+
T Consensus 155 ~~~v~~n~~~~~L~~~~~v~i~~gfN~W~~~~f~~~~~k~~~~g~ww~~~v~Vp~~A~~ldfVf~~g~~~yDNN~~~ 231 (1036)
T PLN02316 155 DIEVYLNRSLSTLANEPDVLIMGAFNGWRWKSFTERLEKTELGGDWWSCKLHIPKEAYKMDFVFFNGQNVYDNNDHK 231 (1036)
T ss_pred eeEEEEcCCCCccCCCCceEEEeccccccccccceeccccccCCCeEEEEEecCccceEEEEEEeCCccccccCCCC
Confidence 456666553 3789999999999764 377777666789999999999999999998 773 4444433
No 250
>PLN02950 4-alpha-glucanotransferase
Probab=91.38 E-value=1.4 Score=50.91 Aligned_cols=89 Identities=20% Similarity=0.375 Sum_probs=57.9
Q ss_pred CCceeeEEEEe--c--CCCcEEEEEEccC---CCCCC--CCCCccCCCCCeEEEEEEeCCce--EEEEEEE---CC--EE
Q 010368 22 DTVLIPMRFVW--P--YGGRSVFLSGSFN---RWSEL--LPMSPVEGCPTVFQIIWSIPPGY--HQYKFCV---DG--EW 85 (512)
Q Consensus 22 ~~~~~~~~f~w--~--~~~~~V~l~Gsf~---~W~~~--~~m~~~~~~~~~f~~~~~L~~g~--~~ykf~V---Dg--~w 85 (512)
.+..++++|.- + ..|++|+|+|+=. +|++. .+|.. .....|++.+.+|++. .+|||++ +| .|
T Consensus 149 ~~~~v~V~F~v~~~~~~~Gq~v~VvGs~~eLGnW~~~~a~~Ls~--~~~p~W~~~v~lp~~~~~~EYKyv~~~~~g~v~W 226 (909)
T PLN02950 149 APDEIVVRFKIACPRLEEGTSVYVTGSIAQLGNWQVDDGLKLNY--TGDSIWEADCLVPKSDFPIKYKYALQTAEGLVSL 226 (909)
T ss_pred CCCceeEEEEEecCccCCCCeEEEEechhhcCCCCccccccccc--CCCCcEEEEEEecCCCceEEEEEEEEcCCCceEE
Confidence 45567888883 3 3589999999865 89865 36654 3457899999999984 9999998 44 38
Q ss_pred eeCCCCCeeeC-CCCCeeeEEEeeCCCC
Q 010368 86 RHDEHQPFISS-EYGIVNTVLLATEPNF 112 (512)
Q Consensus 86 ~~d~~~~~~~d-~~G~~nn~~~v~~~~~ 112 (512)
...++.-.... ..++..-++...+..+
T Consensus 227 E~g~NR~~~~p~~~~~~~~~~~~~~~~~ 254 (909)
T PLN02950 227 ELGVNRELSLDSSSGKPPSYIVASDGAF 254 (909)
T ss_pred eeCCCceeecCcccCCceEEEecccccc
Confidence 66655433222 2233333444444433
No 251
>PLN02950 4-alpha-glucanotransferase
Probab=91.12 E-value=1.6 Score=50.39 Aligned_cols=66 Identities=27% Similarity=0.544 Sum_probs=46.2
Q ss_pred ceeeEEEEe---cCCCcEEEEEEccC---CCCCC--CCCCccC-CCCCeEEEEEEeCCce-EEEEEEE---CCE---Eee
Q 010368 24 VLIPMRFVW---PYGGRSVFLSGSFN---RWSEL--LPMSPVE-GCPTVFQIIWSIPPGY-HQYKFCV---DGE---WRH 87 (512)
Q Consensus 24 ~~~~~~f~w---~~~~~~V~l~Gsf~---~W~~~--~~m~~~~-~~~~~f~~~~~L~~g~-~~ykf~V---Dg~---w~~ 87 (512)
..+.++|.- +.-|++|+|+|+-. +|+.. .+|.... .....|++.+.||.|. .+|||++ +|+ |..
T Consensus 7 ~~V~V~F~i~y~T~~GQ~l~VvGs~~~LG~Wd~~kA~~Ls~~~~~d~~~W~~~v~lp~~~~ieYKYv~v~~~g~vi~WE~ 86 (909)
T PLN02950 7 KSVTLSFRIPYYTQWGQSLLVCGSEPLLGSWNVKKGLLLSPVHQGDELVWEGSVSVPEGFSCEYSYYVVDDNKNVLRWEA 86 (909)
T ss_pred CcEEEEEEeEEecCCCCeEEEEecchhcCCCCcccceecccccCCCCCeEEEEEEecCCCeEEEEEEEEeCCCceeeeec
Confidence 346666663 33589999999885 79864 5775431 1234899999999975 9999995 443 755
Q ss_pred CC
Q 010368 88 DE 89 (512)
Q Consensus 88 d~ 89 (512)
.+
T Consensus 87 g~ 88 (909)
T PLN02950 87 GK 88 (909)
T ss_pred CC
Confidence 54
No 252
>TIGR02100 glgX_debranch glycogen debranching enzyme GlgX. This family consists of the GlgX protein from the E. coli glycogen operon and probable equivalogs from other prokaryotic species. GlgX is not required for glycogen biosynthesis, but instead acts as a debranching enzyme for glycogen catabolism. This model distinguishes GlgX from pullanases and other related proteins that also operate on alpha-1,6-glycosidic linkages. In the wide band between the trusted and noise cutoffs are functionally similar enzymes, mostly from plants, that act similarly but usually are termed isoamylase.
Probab=90.40 E-value=0.68 Score=51.91 Aligned_cols=54 Identities=22% Similarity=0.429 Sum_probs=41.3
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCC----CCCCCccCCCCCeEEEEEE-eCCceEEEEEEECCEE
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSE----LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~----~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg~w 85 (512)
+.|. |...|++|.|+ -|++|.. ..+|.+ +.+|+|++.++ +.+|. .|+|.|+|.|
T Consensus 16 ~~F~vwap~A~~V~L~-l~~~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~g~-~Y~yrv~g~~ 75 (688)
T TIGR02100 16 VNFALFSANAEKVELC-LFDAQGEKEEARLPLPE--RTDDIWHGYLPGAQPGQ-LYGYRVHGPY 75 (688)
T ss_pred EEEEEECCCCCEEEEE-EEcCCCCceeeEEeccc--CCCCEEEEEECCCCCCC-EEEEEEeeee
Confidence 6776 99999999996 5666542 347765 34689999997 67776 5999999864
No 253
>TIGR02102 pullulan_Gpos pullulanase, extracellular, Gram-positive. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. In contrast, a glycogen debranching enzyme such GlgX, homologous to this family, can release glucose at alpha,1-6 linkages from glycogen first subjected to limit degradation by phosphorylase. Characterized members of this family include a surface-located pullulanase from Streptococcus pneumoniae (PubMed:11083842) and an extracellular bifunctional amylase/pullulanase with C-terminal pullulanase activity (PubMed:8798645).
Probab=89.36 E-value=0.89 Score=53.29 Aligned_cols=64 Identities=9% Similarity=0.077 Sum_probs=46.8
Q ss_pred EEEE-ecCCCcEEEEEE-ccCCCCC---CCCCCccCCCCCeEEEEEE-eCCc-----eEEEEEEECC----EEeeCCCCC
Q 010368 28 MRFV-WPYGGRSVFLSG-SFNRWSE---LLPMSPVEGCPTVFQIIWS-IPPG-----YHQYKFCVDG----EWRHDEHQP 92 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~G-sf~~W~~---~~~m~~~~~~~~~f~~~~~-L~~g-----~~~ykf~VDg----~w~~d~~~~ 92 (512)
++|. |...+++|.|++ ++++|.. .++|.+. ..|+|++.++ +.+| -+.|+|.|++ ....||...
T Consensus 329 v~F~vWAP~A~~V~L~lyd~~~~~~~~~~~~m~~~--~~GvW~v~v~~~~~G~~d~~G~~Y~Y~V~~~~~~~~~~DPYA~ 406 (1111)
T TIGR02102 329 VTLKLWSPSADHVSVVLYDKDDQDKVVGTVELKKG--DRGVWEVQLTKENTGIDSLTGYYYHYEITRGGDKVLALDPYAK 406 (1111)
T ss_pred EEEEEECCCCCEEEEEEEeCCCCCCceeeEecccC--CCCEEEEEECCcccCcccCCCceEEEEEECCCceEEEeChhhe
Confidence 5776 999999999998 4566754 4688763 4799999997 4443 3688888876 457777654
Q ss_pred e
Q 010368 93 F 93 (512)
Q Consensus 93 ~ 93 (512)
.
T Consensus 407 a 407 (1111)
T TIGR02102 407 S 407 (1111)
T ss_pred E
Confidence 3
No 254
>PRK03705 glycogen debranching enzyme; Provisional
Probab=88.68 E-value=0.81 Score=50.99 Aligned_cols=54 Identities=19% Similarity=0.412 Sum_probs=41.3
Q ss_pred EEEE-ecCCCcEEEEEEccCCCC--CCCCCCccCCCCCeEEEEEE-eCCceEEEEEEECCEE
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWS--ELLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~--~~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg~w 85 (512)
+.|. |...+++|.|+. |++|. ..++|.+ +.+|+|++.++ +.+|. .|+|.|+|.|
T Consensus 21 ~~F~vwAP~A~~V~L~l-~~~~~~~~~~~m~~--~~~gvW~~~v~~~~~G~-~Y~yrv~g~~ 78 (658)
T PRK03705 21 VNFTLFSAHAERVELCV-FDENGQEQRYDLPA--RSGDIWHGYLPGARPGL-RYGYRVHGPW 78 (658)
T ss_pred EEEEEECCCCCEEEEEE-EcCCCCeeeEeeee--ccCCEEEEEECCCCCCC-EEEEEEcccc
Confidence 6786 999999999998 77653 2357765 34689999998 55664 5999999854
No 255
>COG1125 OpuBA ABC-type proline/glycine betaine transport systems, ATPase components [Amino acid transport and metabolism]
Probab=87.82 E-value=1.9 Score=41.84 Aligned_cols=108 Identities=15% Similarity=0.190 Sum_probs=62.5
Q ss_pred CHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCC-CCcccccCccccccCcccccccCCCC
Q 010368 299 NLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCS-SSLPILKLPICAIPVGTWVPKIGEPN 377 (512)
Q Consensus 299 sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~-~~~~~l~~~v~~l~ig~~~~~v~~~m 377 (512)
.+.||+++ .+++.|++ .| +++-+-+..+|++.-...|-... .........+.... +.+.+
T Consensus 195 DidEA~kL-----adri~vm~----~G---~i~Q~~~P~~il~~Pan~FV~~f~g~~~~~~~~l~~~~-------~~~~~ 255 (309)
T COG1125 195 DIDEALKL-----ADRIAVMD----AG---EIVQYDTPDEILANPANDFVEDFFGESERGLRLLSLVS-------VADAV 255 (309)
T ss_pred CHHHHHhh-----hceEEEec----CC---eEEEeCCHHHHHhCccHHHHHHHhccccccccccchhh-------HHHhh
Confidence 35566654 35677773 45 79999999998865544432100 00000001111111 11111
Q ss_pred CCC----ceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHH
Q 010368 378 RRP----LAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITA 425 (512)
Q Consensus 378 ~~~----~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~ 425 (512)
... --.+.......+++..+...+.+.+||+|++|+++|.+++.+++.
T Consensus 256 ~~~~~~~~~~~~~~~~~~~~ls~~~~~~~~~~~Vvd~~g~~~G~vt~~~l~~ 307 (309)
T COG1125 256 RRGEPADGEPLLEGFVDRDALSDFLARGRSVLPVVDEDGRPLGTVTRADLLD 307 (309)
T ss_pred cccccccCCccccchhhHHHHHHHHhcCCceeEEECCCCcEeeEEEHHHHhh
Confidence 111 112233344456888888889999999999999999999999875
No 256
>TIGR02103 pullul_strch alpha-1,6-glucosidases, pullulanase-type. Members of this protein family include secreted (or membrane-anchored) pullulanases of Gram-negative bacteria and pullulanase-type starch debranching enzymes of plants. Both enzymes hydrolyze alpha-1,6 glycosidic linkages. Pullulan is an unusual, industrially important polysaccharide in which short alpha-1,4 chains (maltotriose) are connected in alpha-1,6 linkages. Enzymes that cleave alpha-1,6 linkages in pullulan and release maltotriose are called pullulanases although pullulan itself may not be the natural substrate. This family is closely homologous to, but architecturally different from, the Gram-positive pullulanases of Gram-positive bacteria (TIGR02102).
Probab=87.33 E-value=2.6 Score=48.46 Aligned_cols=66 Identities=20% Similarity=0.175 Sum_probs=45.5
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCC--CCCCCccCCCCCeEEEEEE-eCCceEEEEEEEC------CE----EeeCCCCC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSE--LLPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVD------GE----WRHDEHQP 92 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~--~~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VD------g~----w~~d~~~~ 92 (512)
-++|. |...+++|.|++.+++|.. ..+|.+. ...|+|++.++ ...|. .|+|.|+ |+ +..||...
T Consensus 136 gv~FrVWAPtA~~V~L~Ly~~~~~~~~~~~M~~~-~~~GVWsv~v~g~~~G~-~Y~Y~V~v~~p~~G~v~~~~v~DPYA~ 213 (898)
T TIGR02103 136 GVTFRLWAPTAQQVKLHIYSASKKVETTLPMTRD-STSGVWSAEGGSSWKGA-YYRYEVTVYHPSTGKVETYLVTDPYSV 213 (898)
T ss_pred cEEEEEECCCCCEEEEEEEcCCCCccceEeCccC-CCCCEEEEEECcCCCCC-EeEEEEEEecCCCCeECCeEEeCcCcc
Confidence 35676 9999999999977776642 3578763 24699999997 34454 4677765 54 37787665
Q ss_pred ee
Q 010368 93 FI 94 (512)
Q Consensus 93 ~~ 94 (512)
..
T Consensus 214 al 215 (898)
T TIGR02103 214 SL 215 (898)
T ss_pred eE
Confidence 43
No 257
>PRK10439 enterobactin/ferric enterobactin esterase; Provisional
Probab=85.89 E-value=3.9 Score=43.03 Aligned_cols=59 Identities=20% Similarity=0.347 Sum_probs=41.6
Q ss_pred CCceeeEEEEecCCC--------cEEEEE--EccC--CCCCCCCCCccCCCCCeEEEEEEeCCc-eEEEEEEE
Q 010368 22 DTVLIPMRFVWPYGG--------RSVFLS--GSFN--RWSELLPMSPVEGCPTVFQIIWSIPPG-YHQYKFCV 81 (512)
Q Consensus 22 ~~~~~~~~f~w~~~~--------~~V~l~--Gsf~--~W~~~~~m~~~~~~~~~f~~~~~L~~g-~~~ykf~V 81 (512)
+....-|+|.|.+.. +.|+|- |..+ .+....+|.+.++ ..+|..++.||.. +-.|+|++
T Consensus 35 ~~~~~~vTFlwr~~~~~~~~~~~~~v~~~~n~~tdh~~~~~~~~l~rl~~-tDvW~~~~~~p~~~r~sY~~~~ 106 (411)
T PRK10439 35 DDGMVRVTFWWRDPQGDEEHSTIRRVWIYINGVTDHHQNSQPQSLQRIAG-TDVWQWSTELSANWRGSYCFIP 106 (411)
T ss_pred CCCcEEEEEEeeCCCCCcccccceeEEEeCCCCCCcCccCCcchhhccCC-CceEEEEEEECcccEEEEEEEe
Confidence 456689999999742 358873 2222 1333347888754 4799999999997 58899998
No 258
>PLN03244 alpha-amylase; Provisional
Probab=84.16 E-value=0.96 Score=50.51 Aligned_cols=65 Identities=23% Similarity=0.391 Sum_probs=43.5
Q ss_pred CCCCCCceeeEEEE-ecCCCcEEEEEEccCCCCCCCCCCc---cC-CCCCeEEEEEE--eCCce-------EEEEEEEC
Q 010368 18 ASVPDTVLIPMRFV-WPYGGRSVFLSGSFNRWSELLPMSP---VE-GCPTVFQIIWS--IPPGY-------HQYKFCVD 82 (512)
Q Consensus 18 ~~~~~~~~~~~~f~-w~~~~~~V~l~Gsf~~W~~~~~m~~---~~-~~~~~f~~~~~--L~~g~-------~~ykf~VD 82 (512)
+|......--+.|. |..||.--+|+|+||||++.....+ .. ..-|+|.++++ |..|. -||.|.-|
T Consensus 123 ~g~~r~~~~~~~~~ewapga~~~~~~gdfn~w~~~~~~~r~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 201 (872)
T PLN03244 123 LGMHRHMEHRVDFMDWAPGARYCAIIGDFNGWSPTENAAREGHFGHDDYGYWFIILEDKLREGEEPDELYFQQYNYVDD 201 (872)
T ss_pred hccccCcccCceeEeecCCcceeeeeccccCCCccccccccccccccccceEEEEechhhhcCCCchhhhHhhhccccc
Confidence 34433333334555 9999999999999999998743333 11 22489999998 77774 25777654
No 259
>KOG0476 consensus Cl- channel CLC-2 and related proteins (CLC superfamily) [Inorganic ion transport and metabolism]
Probab=83.92 E-value=1.4 Score=48.60 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=53.8
Q ss_pred cccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECC--CCcEEEEEeHHHHHHHHhc
Q 010368 367 GTWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDD--NDSLLDIYCRSDITALAKD 429 (512)
Q Consensus 367 g~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~--~g~liGivs~~Di~~~~~~ 429 (512)
+.+...|.++|.+++..+..+.|..|..+.+....++.+|+||+ +.-++|.|.++.+..++..
T Consensus 584 ~~h~v~VE~iMV~dv~yI~k~~Ty~elre~l~~~~lR~~PlV~s~esmiLlGSV~R~~L~~ll~~ 648 (931)
T KOG0476|consen 584 SVHTVKVEHIMVTDVKYITKDTTYRELREALQTTTLRSFPLVESKESMILLGSVARRYLTALLQR 648 (931)
T ss_pred ceeEEEeeeeccccceeeeccCcHHHHHHHHHhCccceeccccCcccceeeehhHHHHHHHHHHh
Confidence 34455788999999999999999999999998777999999986 4478999999999877654
No 260
>PRK14510 putative bifunctional 4-alpha-glucanotransferase/glycogen debranching enzyme; Provisional
Probab=79.23 E-value=6.4 Score=47.24 Aligned_cols=54 Identities=15% Similarity=0.276 Sum_probs=42.5
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCCC----CCCCccCCCCCeEEEEEE-eCCceEEEEEEECCEE
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSEL----LPMSPVEGCPTVFQIIWS-IPPGYHQYKFCVDGEW 85 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~----~~m~~~~~~~~~f~~~~~-L~~g~~~ykf~VDg~w 85 (512)
|.|. |...+++|.|+ -|++|... ++|.. +.+++|++.+. +.+|. .|+|.|+|.|
T Consensus 25 v~F~v~ap~A~~V~L~-lf~~~~~~~~~~~~l~~--~~g~vW~~~i~~~~~g~-~Ygyrv~g~~ 84 (1221)
T PRK14510 25 VNLALFSGAAERVEFC-LFDLWGVREEARIKLPG--RTGDVWHGFIVGVGPGA-RYGNRQEGPG 84 (1221)
T ss_pred EEEEEECCCCCEEEEE-EEECCCCCeeEEEECCC--CcCCEEEEEEccCCCCc-EEEEEeccCC
Confidence 7786 99999999998 89998643 35532 45789999887 77786 6999999855
No 261
>cd02857 CD_pullulan_degrading_enzymes_N_term CD and pullulan-degrading enzymes N-terminus domain. Members of this subgroup include: Cyclomaltodextrinase (CDase), maltogenic amylase, and neopullulanase all of which are capable of hydrolyzing all or two of the following three types of substrates: cyclomaltodextrins (CDs), pullulan, and starch. These enzymes hydrolyze CDs and starch to maltose and pullulan to panose by cleavage of alpha-1,4 glycosidic bonds whereas alpha-amylases essentially lack activity on CDs and pullulan. They also catalyze transglycosylation of oligosaccharides to the C3-, C4- or C6-hydroxyl groups of various acceptor sugar molecules. The N-terminus of the CD and pullulan-degrading enzymes may be related to the immunoglobulin and/or fibronectin type III superfamilies. These domains are associated with different types of catalytic domains at either the N-terminal or C-terminal end and may be involved in homodimeric/tetrameric/dodecameric interactions. Members of
Probab=77.03 E-value=14 Score=30.89 Aligned_cols=58 Identities=17% Similarity=0.122 Sum_probs=38.6
Q ss_pred ceeeEEEEec-CCCcEEEEEEccCC--CCC-CCCCCccCCCC--CeEEEEEEeCCceEEEEEEE
Q 010368 24 VLIPMRFVWP-YGGRSVFLSGSFNR--WSE-LLPMSPVEGCP--TVFQIIWSIPPGYHQYKFCV 81 (512)
Q Consensus 24 ~~~~~~f~w~-~~~~~V~l~Gsf~~--W~~-~~~m~~~~~~~--~~f~~~~~L~~g~~~ykf~V 81 (512)
..+.+++.=. ...++|.|.-.-+. |.. .++|.+....+ ..|++++.++.|.+.|.|.|
T Consensus 16 ~~v~irlr~~~~~v~~v~l~~~~~~~~~~~~~~~M~~~~~~~~~~~~~~~i~~~~~~~~Y~F~l 79 (116)
T cd02857 16 DTLHIRLRTKKGDVAKVYLRYGDPYDKGEEEEVPMRKDGSDELFDYWEATLPPPTGRLRYYFEL 79 (116)
T ss_pred CEEEEEEEecCCCccEEEEEEECCCCCCCceEEEEEEeeeCCceeEEEEEEecCCcEEEEEEEE
Confidence 4566666533 33588888665443 222 46887653222 35999999888999999999
No 262
>KOG0470 consensus 1,4-alpha-glucan branching enzyme/starch branching enzyme II [Carbohydrate transport and metabolism]
Probab=73.51 E-value=4.3 Score=44.79 Aligned_cols=41 Identities=27% Similarity=0.505 Sum_probs=31.5
Q ss_pred EEEE-ecCCCcEEEEEEccCCCCCCC-CCCccCCCCCeEEEEEE
Q 010368 28 MRFV-WPYGGRSVFLSGSFNRWSELL-PMSPVEGCPTVFQIIWS 69 (512)
Q Consensus 28 ~~f~-w~~~~~~V~l~Gsf~~W~~~~-~m~~~~~~~~~f~~~~~ 69 (512)
+.|+ |..+++.|.++|+||+|+... .+.. ....|.|++.++
T Consensus 115 v~~~ewaP~a~~~s~~gd~n~W~~~~~~~~~-k~~~g~w~i~l~ 157 (757)
T KOG0470|consen 115 VDFTEWAPLAEAVSLIGDFNNWNPSSNELKP-KDDLGVWEIDLP 157 (757)
T ss_pred eeeeeecccccccccccccCCCCCcccccCc-ccccceeEEecC
Confidence 6676 999999999999999999863 3332 123578888776
No 263
>PLN02877 alpha-amylase/limit dextrinase
Probab=70.06 E-value=20 Score=41.67 Aligned_cols=51 Identities=14% Similarity=0.227 Sum_probs=35.7
Q ss_pred eEEEE-ecCCCcEEEEEEccCCCCCC-----CCCCccCCCCCeEEEEEEeC-CceEEEEEEEC
Q 010368 27 PMRFV-WPYGGRSVFLSGSFNRWSEL-----LPMSPVEGCPTVFQIIWSIP-PGYHQYKFCVD 82 (512)
Q Consensus 27 ~~~f~-w~~~~~~V~l~Gsf~~W~~~-----~~m~~~~~~~~~f~~~~~L~-~g~~~ykf~VD 82 (512)
-++|. |...+++|.|+- |++|... .+|. ..+|+|++.++-. .| +.|+|.|+
T Consensus 223 g~~F~VWAPtA~~V~L~l-yd~~~~~~~~~~~~m~---~~~GVWsv~v~~~~~G-~~Y~Y~V~ 280 (970)
T PLN02877 223 AVSLYLWAPTAQAVSLCL-YDDPRGKEPLEIVQLK---ESNGVWSVEGPKSWEG-CYYVYEVS 280 (970)
T ss_pred CEEEEEECCCCCEEEEEE-ecCCCCccceEEeccc---CCCCEEEEEeccCCCC-CeeEEEEe
Confidence 46676 999999999995 6666422 3454 4579999999843 44 45777775
No 264
>COG3794 PetE Plastocyanin [Energy production and conversion]
Probab=60.73 E-value=27 Score=30.26 Aligned_cols=49 Identities=18% Similarity=0.253 Sum_probs=33.7
Q ss_pred eeEEEEecCC-CcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEE
Q 010368 26 IPMRFVWPYG-GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (512)
Q Consensus 26 ~~~~f~w~~~-~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~yk 78 (512)
=.|+|+|... +++|...++..-|... .+.- +.+-.|+.+++- ||.|.|+
T Consensus 62 DTVtw~~~d~~~Hnv~~~~~~~~~g~~-~~~~--~~~~s~~~Tfe~-~G~Y~Y~ 111 (128)
T COG3794 62 DTVTWVNTDSVGHNVTAVGGMDPEGSG-TLKA--GINESFTHTFET-PGEYTYY 111 (128)
T ss_pred CEEEEEECCCCCceEEEeCCCCccccc-cccc--CCCcceEEEecc-cceEEEE
Confidence 3689999999 8999999999555442 2211 113456666665 8999886
No 265
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=60.16 E-value=28 Score=38.84 Aligned_cols=98 Identities=13% Similarity=0.150 Sum_probs=59.9
Q ss_pred HHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhc-ccccccCcccc-----cHHHHHhcCCCCCCCccccCCcc
Q 010368 390 LSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKD-KAYAHINLSEM-----TIHQALQLGQDSYSPYELRSQRC 463 (512)
Q Consensus 390 l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~-~~~~~l~~~~~-----~v~~~l~~~~~~~~~~~~~~~~~ 463 (512)
+.+..+.+...+ ..+.++|.+|.++.+....+++..... +......|.+. -++-++. ...+
T Consensus 61 l~~l~~~l~~~~-~~~~l~D~~G~vL~~~g~~~~~~~~~~~~~~~G~~w~E~~~GTnaig~al~------------~~~p 127 (638)
T PRK11388 61 LEDAWEYMADRE-CALLILDETGCILSRNGDPQTLQQLSALGFNDGTYCAEGIIGTNALSLAAI------------SGQP 127 (638)
T ss_pred HHHHHHHhcCCC-cEEEEEcCCceEEEEeCCHHHHHHHHHcCCccCCccchhccCcCHHHHHHh------------cCCc
Confidence 344445555555 688899999999999998888765443 22212223221 2222221 2345
Q ss_pred eEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehH
Q 010368 464 QMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLS 504 (512)
Q Consensus 464 ~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~ 504 (512)
+.|....-..+. +..-.+...||.|+ +|+++|+|+++
T Consensus 128 v~v~g~EH~~~~---~~~~~c~aaPI~d~-~G~liGvl~l~ 164 (638)
T PRK11388 128 VKTMGDQHFKQA---LHNWAFCATPVFDS-KGRLTGTIALA 164 (638)
T ss_pred eEEecHHHHHHh---ccCceEEeeEEEcC-CCCEEEEEEEE
Confidence 556655544443 34445678999996 89999999743
No 266
>COG1559 Aminodeoxychorismate lyase [Coenzyme transport and metabolism]
Probab=59.88 E-value=1.2e+02 Score=30.99 Aligned_cols=145 Identities=12% Similarity=0.162 Sum_probs=91.3
Q ss_pred CCceEeCCCCCHHHHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCcc
Q 010368 289 RPLVYAGPNDNLKDVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVGT 368 (512)
Q Consensus 289 ~~~i~v~~~~sl~da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig~ 368 (512)
+..+.|.+.+++.+....+.+++ +|.-..+++++.+.... .+.++.|+
T Consensus 45 ~~~v~I~~Gs~~~~i~~~Le~~~---------------------vI~~~~~f~~~~~~~~~-----------~~~lkaG~ 92 (342)
T COG1559 45 KKTVTIPPGSSVSEIGSELEKQK---------------------VIKNARVFRLYLKYNPA-----------AGSLKAGE 92 (342)
T ss_pred ceEEEECCCCCHHHHHHHHHhcC---------------------ccccHHHHHHHHHhcCc-----------cCCcCCce
Confidence 37899999999999999987753 44446777777764322 23355555
Q ss_pred cccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHHHHHHhcccccccCcccccHHHHHhc
Q 010368 369 WVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQL 448 (512)
Q Consensus 369 ~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~ 448 (512)
| .+.+.++..+++++|.+.+.....++=.+| .+.+++...+.+...-..........+++..
T Consensus 93 Y-------------~l~~~ms~~~il~~L~~Gk~~~~~~~ipEG-----~t~~~i~~~l~~~~~l~~~~~~~~~~~~~~~ 154 (342)
T COG1559 93 Y-------------RLRPGMSAADILKLLESGKSAQFKVTIPEG-----YTLKQIAKKLAEAPVLDGVLDGLAIAEIAAR 154 (342)
T ss_pred e-------------ecCCCCCHHHHHHHHhcCccccceEecCCC-----ccHHHHHHHHhcchhhhhhhhhhhhHHHHHh
Confidence 5 478899999999999876654444442233 4677777755544332222223344444322
Q ss_pred CC--CCCCCccccCCcceEEcCCCCHHHHHHHHhcCC
Q 010368 449 GQ--DSYSPYELRSQRCQMCLPSDTLHKVMERLANPG 483 (512)
Q Consensus 449 ~~--~~~~~~~~~~~~~~tv~~~~tL~~a~~~m~~~~ 483 (512)
-. ......+..-++-..++++++-.++++.|.+.-
T Consensus 155 ~p~~~~~~~EG~l~PdTY~~~~g~~~~~Ii~~mi~~~ 191 (342)
T COG1559 155 LPKLDKERLEGYLFPDTYEFTRGTSAEDIIKRMIKAM 191 (342)
T ss_pred cCCCcCCCCceeecCceeeeCCCCCHHHHHHHHHHHH
Confidence 11 112233444566778889999999999987654
No 267
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=59.84 E-value=17 Score=39.22 Aligned_cols=108 Identities=12% Similarity=0.171 Sum_probs=70.8
Q ss_pred CceeecCCCCHH-HHHHHHHhcCCCEEEEECCCC-cEEEEEeHHHHHHHHhcccccccCcccccHHHHHhcCCCCCCCcc
Q 010368 380 PLAMLRPSASLS-AALNLLVQAQVSSIPIVDDND-SLLDIYCRSDITALAKDKAYAHINLSEMTIHQALQLGQDSYSPYE 457 (512)
Q Consensus 380 ~~~~v~~~~~l~-~a~~~m~~~~~~~lpVvd~~g-~liGivs~~Di~~~~~~~~~~~l~~~~~~v~~~l~~~~~~~~~~~ 457 (512)
.+..+..+..+. +........+++++||.+.+. ..+|..=....+.+..... .+...++...+
T Consensus 215 ~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~~~~~~i~~~L~~~~~~~~~~~~----~~~~~~v~~~~----------- 279 (498)
T KOG2118|consen 215 DVFALDANTKLDRETVGEIVKHGYSRIPVYEQEPKNKIGGLLVMNLLRLLQVEV----PLEPLPVSESA----------- 279 (498)
T ss_pred hheeeccccccchHHHhhHhhcCcceeeeccCcccchhhHHHHhhhhhhhcccc----ccccccchhhh-----------
Confidence 345566676665 555566789999999997532 2233322222223222111 12334555554
Q ss_pred ccCCcceEEcCCCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHH
Q 010368 458 LRSQRCQMCLPSDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDI 506 (512)
Q Consensus 458 ~~~~~~~tv~~~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DI 506 (512)
..+...+..++++.+.++.+..-+.|.+.|.. ..--++++++.|+
T Consensus 280 --~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~--~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 280 --LLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN--GHVDIFVLTLEDL 324 (498)
T ss_pred --ccccccCCCcccHHHHHHHHhhhhceeEEEec--CCcceeeEeccch
Confidence 45788899999999999999999988887777 4556899999887
No 268
>PF01357 Pollen_allerg_1: Pollen allergen; InterPro: IPR007117 Expansins are unusual proteins that mediate cell wall extension in plants []. They are believed to act as a sort of chemical grease, allowing polymers to slide past one another by disrupting non-covalent hydrogen bonds that hold many wall polymers to one another. This process is not degradative and hence does not weaken the wall, which could otherwise rupture under internal pressure during growth. Sequence comparisons indicate at least four distinct expansin cDNAs in rice and at least six in Arabidopsis. The proteins are highly conserved in size and sequence (75-95% amino acid sequence similarity between any pairwise comparison), and phylogenetic trees indicate that this multigene family formed before the evolutionary divergence of monocotyledons and dicotyledons []. Sequence and motif analyses show no similarities to known functional domains that might account for expansin action on wall extension. It is thought that several highly-conserved tryptophans may function in expansin binding to cellulose, or other glycans. The high conservation of the family indicates that the mechanism by which expansins promote wall extensin tolerates little variation in protein structure. Grass pollens, such as pollen from timothy grass, represent a major cause of type I allergy []. Interestingly, expansins share a high degree of sequence similarity with the Lol p I family of allergens. This entry represents the C-terminal domain.; PDB: 2VXQ_A 1WHP_A 1BMW_A 1WHO_A 2HCZ_X 2JNZ_A 3FT9_A 3FT1_C 1N10_B.
Probab=55.94 E-value=37 Score=26.86 Aligned_cols=61 Identities=21% Similarity=0.244 Sum_probs=41.1
Q ss_pred CceeeEEEEecCCC---cEEEEEEccC-CCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEE-C-CEEeeC
Q 010368 23 TVLIPMRFVWPYGG---RSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV-D-GEWRHD 88 (512)
Q Consensus 23 ~~~~~~~f~w~~~~---~~V~l~Gsf~-~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~V-D-g~w~~d 88 (512)
+.-.-+.+.+.+|+ .+|.|.++=+ +|. +|.+. -+..|++.-.++.|-+.||+.. | |+|...
T Consensus 11 ~~~l~v~v~n~gG~gdi~~Vevk~~~s~~W~---~m~r~--wGa~W~~~~~~~~~pls~Rvts~~~G~~vv~ 77 (82)
T PF01357_consen 11 PYYLAVLVKNVGGDGDIKAVEVKQSGSGNWI---PMKRS--WGAVWQIDSNPPGGPLSFRVTSGDSGQTVVA 77 (82)
T ss_dssp TTEEEEEEEECCTTS-EEEEEEEETTSSS-E---E-EEE--CTTEEEEE-SS--SSEEEEEEETTTSEEEEE
T ss_pred CcEEEEEEEEcCCCccEEEEEEEeCCCCCce---EeecC--cCceEEECCCCcCCCEEEEEEEcCCCeEEEE
Confidence 44466677777665 7799995554 474 66664 3579999887888899999998 7 888765
No 269
>KOG1263 consensus Multicopper oxidases [Secondary metabolites biosynthesis, transport and catabolism]
Probab=53.04 E-value=11 Score=41.14 Aligned_cols=63 Identities=19% Similarity=0.336 Sum_probs=40.8
Q ss_pred CCCCCCCCCccCCCCCeEEEEEEeCCce-EEEEEEECCE----EeeCCCCCeeeC-CCCCeeeEEEeeCCCCCC
Q 010368 47 RWSELLPMSPVEGCPTVFQIIWSIPPGY-HQYKFCVDGE----WRHDEHQPFISS-EYGIVNTVLLATEPNFMH 114 (512)
Q Consensus 47 ~W~~~~~m~~~~~~~~~f~~~~~L~~g~-~~ykf~VDg~----w~~d~~~~~~~d-~~G~~nn~~~v~~~~~~~ 114 (512)
.|.. +...|..-.+|.|-+.|+++||. |.|+|.||++ |-+......-.+ .+|. |.|......|
T Consensus 84 hWhG-v~q~kn~w~DG~~~TqCPI~Pg~~~tY~F~v~~q~GT~~yh~h~~~~Ra~G~~G~----liI~~~~~~p 152 (563)
T KOG1263|consen 84 HWHG-VRQRKNPWQDGVYITQCPIQPGENFTYRFTVKDQIGTLWYHSHVSWQRATGVFGA----LIINPRPGLP 152 (563)
T ss_pred Eecc-ccccCCccccCCccccCCcCCCCeEEEEEEeCCcceeEEEeeccccccccCceeE----EEEcCCccCC
Confidence 3654 44444433356899999999996 9999999953 777766654444 3443 4555554444
No 270
>PF03370 CBM_21: Putative phosphatase regulatory subunit; InterPro: IPR005036 This family consists of several eukaryotic proteins that are thought to be involved in the regulation of glycogen metabolism. For instance, the mouse PTG protein O08541 from SWISSPROT has been shown to interact with glycogen synthase, phosphorylase kinase, phosphorylase a: these three enzymes have key roles in the regulation of glycogen metabolism. PTG also binds the catalytic subunit of protein phosphatase 1 (PP1C) and localizes it to glycogen. Subsets of similar interactions have been observed with several other members of this family, such as the yeast PIG1, PIG2, GAC1 and GIP2 proteins. While the precise function of these proteins is not known, they may serve a scaffold function, bringing together the key enzymes in glycogen metabolism. This entry is a carbohydrate binding domain.; GO: 0005515 protein binding; PDB: 2V8M_D 2V8L_A 2VQ4_A 2EEF_A 2DJM_A.
Probab=51.73 E-value=33 Score=28.92 Aligned_cols=48 Identities=19% Similarity=0.380 Sum_probs=32.6
Q ss_pred cEEEEEEccCCCCCCCCCCc--cC--------CCCCeEEEEEEeCCc--------eEEEEEEECCE
Q 010368 37 RSVFLSGSFNRWSELLPMSP--VE--------GCPTVFQIIWSIPPG--------YHQYKFCVDGE 84 (512)
Q Consensus 37 ~~V~l~Gsf~~W~~~~~m~~--~~--------~~~~~f~~~~~L~~g--------~~~ykf~VDg~ 84 (512)
++|.|.=+||+|.....+.. .. .....|...+.||+. .+--+|.+.|+
T Consensus 34 K~V~VryT~D~W~t~~d~~a~y~~~~~~~~~~~~~d~F~F~i~l~~~~~~~~~~lef~I~Y~~~g~ 99 (113)
T PF03370_consen 34 KEVTVRYTFDNWRTFSDVPASYVSSCPGPSPSGNYDRFSFSIPLPDLLPPEGGRLEFCIRYEVNGQ 99 (113)
T ss_dssp EEEEEEEETSCTSSCCEEEEEEEE---EESTTSSEEEEEEEEE-SSE--T-TS-SEEEEEEEETTE
T ss_pred eEEEEEEeeCCCCceeEEeeEEeccccCCCCCCcccEEEEEEECCcccccCCceEEEEEEEEeCCC
Confidence 88999999999987543321 11 112578899998764 26678889885
No 271
>PF02903 Alpha-amylase_N: Alpha amylase, N-terminal ig-like domain; InterPro: IPR004185 O-Glycosyl hydrolases 3.2.1. from EC are a widespread group of enzymes that hydrolyse the glycosidic bond between two or more carbohydrates, or between a carbohydrate and a non-carbohydrate moiety. A classification system for glycosyl hydrolases, based on sequence similarity, has led to the definition of 85 different families [, ]. This classification is available on the CAZy (CArbohydrate-Active EnZymes) web site. Enzymes containing this domain belong to family 13 (GH13 from CAZY) of the glycosyl hydrolases. The maltogenic alpha-amylase is an enzyme which catalyses hydrolysis of (1-4)-alpha-D-glucosidic linkages in polysaccharides so as to remove successive alpha-maltose residues from the non-reducing ends of the chains in the conversion of starch to maltose. Other enzymes include neopullulanase, which hydrolyses pullulan to panose, and cyclomaltodextrinase, which hydrolyses cyclodextrins.; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds, 0005975 carbohydrate metabolic process; PDB: 1J0J_A 1J0H_A 1J0I_A 1J0K_A 1EA9_C 1SMA_A 1GVI_B 1WZK_B 1VFM_B 3A6O_A ....
Probab=45.88 E-value=33 Score=29.10 Aligned_cols=69 Identities=17% Similarity=0.211 Sum_probs=43.9
Q ss_pred CCceeeEEEEec-CCCcEEEE-EEccCCC----CC-CCCCCccC--CCCCeEEEEEEeCCceEEEEEEE--CC-EEeeCC
Q 010368 22 DTVLIPMRFVWP-YGGRSVFL-SGSFNRW----SE-LLPMSPVE--GCPTVFQIIWSIPPGYHQYKFCV--DG-EWRHDE 89 (512)
Q Consensus 22 ~~~~~~~~f~w~-~~~~~V~l-~Gsf~~W----~~-~~~m~~~~--~~~~~f~~~~~L~~g~~~ykf~V--Dg-~w~~d~ 89 (512)
....+-++|+=. +..++|.| .|+-.+| .. ..+|.+.. +.-..|++++.++..+..|.|.| +| .|..++
T Consensus 19 ~~~~l~IRLRt~k~Dv~~V~l~~~d~~~~~~~~~~~~~~M~k~~~~~~fDyye~~l~~~~~r~~Y~F~l~~~~~~~~y~~ 98 (120)
T PF02903_consen 19 DGDTLHIRLRTAKNDVEKVFLVYGDPYEEEGKWTYKSVEMEKIASDELFDYYEATLKLPEKRLRYYFELEDGGETYYYGE 98 (120)
T ss_dssp CTTEEEEEEEEETTT-SEEEEEEEETTSETTCECEEEEEEEEEEEESSEEEEEEEEE-TTSEEEEEEEEEETTEEEEEET
T ss_pred CCCEEEEEEEecCCCCCEEEEEECCCccccccceEEEEEeEEEEeCCCeEEEEEEEECCCCeEEEEEEEEeCCEEEEEeC
Confidence 445667777654 34588888 4777766 11 24776632 22357899999999999999988 34 355554
Q ss_pred C
Q 010368 90 H 90 (512)
Q Consensus 90 ~ 90 (512)
.
T Consensus 99 ~ 99 (120)
T PF02903_consen 99 R 99 (120)
T ss_dssp T
T ss_pred C
Confidence 3
No 272
>TIGR02375 pseudoazurin pseudoazurin. Pseudoazurin, also called cupredoxin, is a small, blue periplasmic protein with a single bound copper atom. Pseudoazurin is related plastocyanins. Several examples of pseudoazurin are encoded by a neighboring gene for, or have been shown to transfer electrons to, copper-containing nitrite reductases (TIGR02376) of the same species.
Probab=45.76 E-value=69 Score=27.24 Aligned_cols=48 Identities=15% Similarity=0.069 Sum_probs=25.0
Q ss_pred eeEEEEecCCCcEEEEE-EccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEE
Q 010368 26 IPMRFVWPYGGRSVFLS-GSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (512)
Q Consensus 26 ~~~~f~w~~~~~~V~l~-Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~yk 78 (512)
=.|+|+|..+++.|... |... +... .... +.+..|+.++. .+|.|.|.
T Consensus 23 dTV~f~n~d~~Hnv~~~~~~~p-~g~~-~~~s--~~g~~~~~tF~-~~G~Y~Y~ 71 (116)
T TIGR02375 23 DTVTFVPTDKGHNVETIKGMIP-EGAE-AFKS--KINEEYTVTVT-EEGVYGVK 71 (116)
T ss_pred CEEEEEECCCCeeEEEccCCCc-CCcc-cccC--CCCCEEEEEeC-CCEEEEEE
Confidence 46899999888776642 2111 1110 1111 12345666665 56777665
No 273
>TIGR03503 conserved hypothetical protein TIGR03503. This set of conserved hypothetical protein has a phylogenetic range that closely matches that of TIGR03501, a putative C-terminal protein targeting signal.
Probab=42.34 E-value=53 Score=33.90 Aligned_cols=42 Identities=12% Similarity=0.203 Sum_probs=29.1
Q ss_pred EEEEccCCCCCCCCCCccCCCCCeEEEEEE--eCCceEEEEEEECCE
Q 010368 40 FLSGSFNRWSELLPMSPVEGCPTVFQIIWS--IPPGYHQYKFCVDGE 84 (512)
Q Consensus 40 ~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~--L~~g~~~ykf~VDg~ 84 (512)
.+.|+|.+ ....+... ..+|.|+..+. .+||.|+.++.+||.
T Consensus 152 ~vvg~f~D--dG~g~DE~-p~DGvFT~~l~l~~~~G~Y~~~v~~~n~ 195 (374)
T TIGR03503 152 IVVGEFED--DGEGLDER-PGDGIFTGEFNLDVAPGEYRPTYQSRNP 195 (374)
T ss_pred EEEEeecc--CCccCCCC-CCCceEEEEeeccCCCceEEEEEEEcCc
Confidence 46677742 22333322 34699998887 568999999999985
No 274
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=41.30 E-value=55 Score=25.55 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=22.7
Q ss_pred CCEEEEECCCCcEEEEEeHHHHHHHHhcc
Q 010368 402 VSSIPIVDDNDSLLDIYCRSDITALAKDK 430 (512)
Q Consensus 402 ~~~lpVvd~~g~liGivs~~Di~~~~~~~ 430 (512)
...+-|+|++|..+|+++.++.+.++...
T Consensus 12 ~~~VrlI~~~g~~lGv~~~~eAl~~A~~~ 40 (76)
T PF05198_consen 12 APEVRLIDEDGEQLGVMSLREALRLAKEK 40 (76)
T ss_dssp -SEEEEE-TTS-EEEEEEHHHHHHHHHHT
T ss_pred CCEEEEECCCCcEeceEEHHHHHHHHHHc
Confidence 45688899999999999999999887665
No 275
>PF13473 Cupredoxin_1: Cupredoxin-like domain; PDB: 1IBZ_D 1IC0_E 1IBY_D.
Probab=39.07 E-value=28 Score=28.64 Aligned_cols=16 Identities=13% Similarity=0.468 Sum_probs=9.5
Q ss_pred CeEEEEE-EeCCceEEE
Q 010368 62 TVFQIIW-SIPPGYHQY 77 (512)
Q Consensus 62 ~~f~~~~-~L~~g~~~y 77 (512)
..+++++ .+.||+|+|
T Consensus 74 ~~~~~~f~~~~~G~y~~ 90 (104)
T PF13473_consen 74 ETATVTFTPLKPGEYEF 90 (104)
T ss_dssp -EEEEEEEE-S-EEEEE
T ss_pred CEEEEEEcCCCCEEEEE
Confidence 4566665 789999876
No 276
>TIGR03009 plancto_dom_2 Planctomycetes uncharacterized domain TIGR03009. Domains described by this model are found, so far, only in the Planctomycetes (Pirellula sp. strain 1 and Gemmata obscuriglobus), in up to four proteins per genome. The function is unknown.
Probab=37.65 E-value=38 Score=32.07 Aligned_cols=14 Identities=7% Similarity=0.206 Sum_probs=10.1
Q ss_pred EE-CCE--EeeCCCCCe
Q 010368 80 CV-DGE--WRHDEHQPF 93 (512)
Q Consensus 80 ~V-Dg~--w~~d~~~~~ 93 (512)
+| ||+ |.+||+...
T Consensus 67 iVsDGk~lW~YDpdleQ 83 (210)
T TIGR03009 67 WICNGTAVYAYNGLAKT 83 (210)
T ss_pred EEECCCEEEEECCChhh
Confidence 44 885 888887754
No 277
>PF14347 DUF4399: Domain of unknown function (DUF4399)
Probab=35.66 E-value=68 Score=25.76 Aligned_cols=32 Identities=25% Similarity=0.449 Sum_probs=24.5
Q ss_pred CCeEEEEEEeCCceEEEEEEECCEEeeCCCCCe
Q 010368 61 PTVFQIIWSIPPGYHQYKFCVDGEWRHDEHQPF 93 (512)
Q Consensus 61 ~~~f~~~~~L~~g~~~ykf~VDg~w~~d~~~~~ 93 (512)
.|.=++.++|+||+|...-+. |.+.+-+..|.
T Consensus 50 ~Gqte~~I~L~PG~htLtl~~-~d~~h~~~~~~ 81 (87)
T PF14347_consen 50 KGQTELNIELPPGKHTLTLQL-GDGDHVPHDPP 81 (87)
T ss_pred CCEEEEEEEeCCCCEEEEEEe-CCCCcccCCCc
Confidence 467789999999999999877 55556655543
No 278
>PF11896 DUF3416: Domain of unknown function (DUF3416); InterPro: IPR021828 This presumed domain is functionally uncharacterised. This domain is found in bacteria and archaea. This domain is about 190 amino acids in length. This domain is found associated with PF00128 from PFAM. ; GO: 0004553 hydrolase activity, hydrolyzing O-glycosyl compounds; PDB: 3ZT7_A 3ZST_B 3ZT6_A 3ZSS_D 3ZT5_B.
Probab=31.84 E-value=78 Score=29.40 Aligned_cols=40 Identities=30% Similarity=0.744 Sum_probs=23.6
Q ss_pred CCCCCCCCCCccCCCCCeEEEEEEeCC-ceEEEEEE--EC--CEEeeC
Q 010368 46 NRWSELLPMSPVEGCPTVFQIIWSIPP-GYHQYKFC--VD--GEWRHD 88 (512)
Q Consensus 46 ~~W~~~~~m~~~~~~~~~f~~~~~L~~-g~~~ykf~--VD--g~w~~d 88 (512)
..|+. .||.+. .+..|+..+.+.. |.|+|+.. +| +.|+++
T Consensus 55 ~~w~~-vpM~~~--gnDrW~a~f~~~~~G~~~f~VeAW~D~faTW~~~ 99 (187)
T PF11896_consen 55 REWQE-VPMTPL--GNDRWEASFTPDRPGRYEFRVEAWVDHFATWRHD 99 (187)
T ss_dssp -B-----B-EES--TS-EEEEEEE--SSEEEEEEEEEEE-HHHHHHHH
T ss_pred Cccee-eccccC--CCCEEEEEEECCCceeEEEEEEEEeccHHHHHHh
Confidence 45987 699875 4679999999875 99999987 46 357766
No 279
>PRK10785 maltodextrin glucosidase; Provisional
Probab=29.38 E-value=1.7e+02 Score=32.48 Aligned_cols=63 Identities=16% Similarity=0.190 Sum_probs=42.5
Q ss_pred CCceeeEEEEecCC--CcEEEEEEccCCCCCCCCCCccCCCC--CeEEEEEEeC--CceEEEEEEE--CCE
Q 010368 22 DTVLIPMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCP--TVFQIIWSIP--PGYHQYKFCV--DGE 84 (512)
Q Consensus 22 ~~~~~~~~f~w~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~--~~f~~~~~L~--~g~~~ykf~V--Dg~ 84 (512)
....+.++++=..+ -++|.|.-..++.....+|.+....+ ..|++++.++ ++++.|.|.+ +|+
T Consensus 17 ~~~~~~~~lr~~~~~~~~~v~l~~~~~~~~~~~~m~~~~~~~~~~~~~~~~~~~~~~~~~~Y~F~l~~~~~ 87 (598)
T PRK10785 17 SKDQLLITLWLTGEDPPQRVMLRCEPDNEEYLLPMEKQRSQPQVTAWRASLPLNSGQPRRRYSFKLLWHDR 87 (598)
T ss_pred CCCEEEEEEEEcCCCceEEEEEEEEcCCCEEEEEeEEeecCCCceEEEEEEEcCCCCceEEEEEEEEeCCE
Confidence 45567777754433 37899976666654556888753222 3589999986 7888888888 554
No 280
>KOG0045 consensus Cytosolic Ca2+-dependent cysteine protease (calpain), large subunit (EF-Hand protein superfamily) [Posttranslational modification, protein turnover, chaperones; Signal transduction mechanisms]
Probab=28.30 E-value=54 Score=36.36 Aligned_cols=27 Identities=26% Similarity=0.610 Sum_probs=21.8
Q ss_pred CCceEEEEEEECCEEe---eCCCCCeeeCC
Q 010368 71 PPGYHQYKFCVDGEWR---HDEHQPFISSE 97 (512)
Q Consensus 71 ~~g~~~ykf~VDg~w~---~d~~~~~~~d~ 97 (512)
..|.|+|||.++|+|+ .|+..|+..+.
T Consensus 115 yaGif~f~~w~~G~W~~VvIDD~LP~~~~~ 144 (612)
T KOG0045|consen 115 YAGIFHFRFWQNGEWVEVVIDDRLPTSNGG 144 (612)
T ss_pred cceEEEEEEEeCCeEEEEEeeeecceEcCC
Confidence 3589999999999994 57788876654
No 281
>TIGR03102 halo_cynanin halocyanin domain. Halocyanins are blue (type I) copper redox proteins found in halophilic archaea such as Natronobacterium pharaonis. This model represents a domain duplicated in some halocyanins, while appearing once in others. This domain includes the characteristic copper ligand residues. This family does not include plastocyanins, and does not include certain divergent paralogs of halocyanin.
Probab=28.15 E-value=1.8e+02 Score=24.71 Aligned_cols=47 Identities=21% Similarity=0.354 Sum_probs=25.9
Q ss_pred eEEEEecCC--CcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEE
Q 010368 27 PMRFVWPYG--GRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (512)
Q Consensus 27 ~~~f~w~~~--~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~yk 78 (512)
.|+|+|+.. +..|...+. ..|.....+. ..+..|+.++. .||.|.|.
T Consensus 51 TVtw~~~~d~~~HnV~s~~~-~~f~s~~~~~---~~G~t~s~Tf~-~~G~Y~Y~ 99 (115)
T TIGR03102 51 TVVWEWTGEGGGHNVVSDGD-GDLDESERVS---EEGTTYEHTFE-EPGIYLYV 99 (115)
T ss_pred EEEEEECCCCCCEEEEECCC-CCcccccccc---CCCCEEEEEec-CCcEEEEE
Confidence 577888753 466664311 2344221111 12457888885 68888886
No 282
>PF05198 IF3_N: Translation initiation factor IF-3, N-terminal domain; InterPro: IPR019814 Initiation factor 3 (IF-3) (gene infC) is one of the three factors required for the initiation of protein biosynthesis in bacteria. IF-3 is thought to function as a fidelity factor during the assembly of the ternary initiation complex which consist of the 30S ribosomal subunit, the initiator tRNA and the messenger RNA. IF-3 is a basic protein that binds to the 30S ribosomal subunit []. The chloroplast initiation factor IF-3(chl) is a protein that enhances the poly(A,U,G)-dependent binding of the initiator tRNA to chloroplast ribosomal 30s subunits in which the central section is evolutionary related to the sequence of bacterial IF-3 []. ; GO: 0003743 translation initiation factor activity, 0006413 translational initiation; PDB: 1TIF_A.
Probab=27.99 E-value=1.1e+02 Score=23.96 Aligned_cols=25 Identities=12% Similarity=0.393 Sum_probs=18.7
Q ss_pred CcEEEEEeCCCCeEEEEEehHHHHHH
Q 010368 484 VRRLVIVEAGSKRVEGIVSLSDIFKF 509 (512)
Q Consensus 484 ~~~l~VVd~~~~~liGiIS~~DIl~~ 509 (512)
...+-|||+ +|..+|++++++.++.
T Consensus 12 ~~~VrlI~~-~g~~lGv~~~~eAl~~ 36 (76)
T PF05198_consen 12 APEVRLIDE-DGEQLGVMSLREALRL 36 (76)
T ss_dssp -SEEEEE-T-TS-EEEEEEHHHHHHH
T ss_pred CCEEEEECC-CCcEeceEEHHHHHHH
Confidence 356778896 9999999999998864
No 283
>PF11797 DUF3324: Protein of unknown function C-terminal (DUF3324); InterPro: IPR021759 This family consists of several hypothetical bacterial proteins of unknown function.
Probab=27.10 E-value=2.1e+02 Score=25.03 Aligned_cols=50 Identities=18% Similarity=0.351 Sum_probs=30.4
Q ss_pred cCCCcEEEEEEccCCCCCCCCCCccCCCCCeEEEEEE-----eCCceEEEEEEE---CCEEeeCCC
Q 010368 33 PYGGRSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWS-----IPPGYHQYKFCV---DGEWRHDEH 90 (512)
Q Consensus 33 ~~~~~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~-----L~~g~~~ykf~V---Dg~w~~d~~ 90 (512)
..++.++....+..+. .|.| +..|...+. |+||+|+++-.+ +++|....+
T Consensus 69 ~~~~~k~~~~~~~~~~----~mAP----NS~f~~~i~~~~~~lk~G~Y~l~~~~~~~~~~W~f~k~ 126 (140)
T PF11797_consen 69 KKGSKKVLYTFKKENM----QMAP----NSNFNFPIPLGGKKLKPGKYTLKITAKSGKKTWTFTKD 126 (140)
T ss_pred ECCCCeEEEEeeccCC----EECC----CCeEEeEecCCCcCccCCEEEEEEEEEcCCcEEEEEEE
Confidence 3334566666666554 3333 234544444 789999999988 456887643
No 284
>PF07495 Y_Y_Y: Y_Y_Y domain; InterPro: IPR011123 This region is mostly found at the end of the beta propellers (IPR011110 from INTERPRO) in a family of two component regulators. However they are also found tandemly repeated in Q891H4 from SWISSPROT without other signal conduction domains being present. It is named after the conserved tyrosines found in the alignment. The exact function is not known.; PDB: 3V9F_D 3VA6_B 3OTT_B 4A2M_D 4A2L_B.
Probab=27.07 E-value=52 Score=24.18 Aligned_cols=42 Identities=26% Similarity=0.446 Sum_probs=21.6
Q ss_pred EEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEE---CCEEeeCC
Q 010368 41 LSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCV---DGEWRHDE 89 (512)
Q Consensus 41 l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~V---Dg~w~~d~ 89 (512)
|.|-=+.|.... .......--.||||.|.++-.+ +|.|..++
T Consensus 14 l~g~d~~W~~~~-------~~~~~~~~~~L~~G~Y~l~V~a~~~~~~~~~~~ 58 (66)
T PF07495_consen 14 LEGFDDEWITLG-------SYSNSISYTNLPPGKYTLEVRAKDNNGKWSSDE 58 (66)
T ss_dssp EETTESSEEEES-------STS-EEEEES--SEEEEEEEEEEETTS-B-SS-
T ss_pred EECCCCeEEECC-------CCcEEEEEEeCCCEEEEEEEEEECCCCCcCccc
Confidence 455445676531 1111334445999999988776 57887664
No 285
>COG2216 KdpB High-affinity K+ transport system, ATPase chain B [Inorganic ion transport and metabolism]
Probab=25.63 E-value=90 Score=33.60 Aligned_cols=38 Identities=32% Similarity=0.565 Sum_probs=33.5
Q ss_pred CCCHHHHHHHHhcCCCcEEEEEeCCCCeEEEEEehHHHHH
Q 010368 469 SDTLHKVMERLANPGVRRLVIVEAGSKRVEGIVSLSDIFK 508 (512)
Q Consensus 469 ~~tL~~a~~~m~~~~~~~l~VVd~~~~~liGiIS~~DIl~ 508 (512)
...+..+.+...+.+-.-|+|++ ++++.|+|-+.|++|
T Consensus 412 p~~l~~~~~~vs~~GGTPL~V~~--~~~~~GVI~LkDivK 449 (681)
T COG2216 412 PEDLDAAVDEVSRLGGTPLVVVE--NGRILGVIYLKDIVK 449 (681)
T ss_pred CHHHHHHHHHHHhcCCCceEEEE--CCEEEEEEEehhhcc
Confidence 34578888999999999999998 799999999999975
No 286
>PRK11388 DNA-binding transcriptional regulator DhaR; Provisional
Probab=24.49 E-value=2.8e+02 Score=30.98 Aligned_cols=97 Identities=11% Similarity=0.043 Sum_probs=52.7
Q ss_pred HHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHh-hcccCCCCcccccCccccccCcccccccCCCCCCCce
Q 010368 304 ARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCR-YFRHCSSSLPILKLPICAIPVGTWVPKIGEPNRRPLA 382 (512)
Q Consensus 304 ~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~-~~~~~~~~~~~l~~~v~~l~ig~~~~~v~~~m~~~~~ 382 (512)
.+.+...+ ..+.+.| . +| .++.+....+++..+.. .+.. . ..+-...++--.+|+-. ....++
T Consensus 65 ~~~l~~~~-~~~~l~D--~-~G---~vL~~~g~~~~~~~~~~~~~~~-G--~~w~E~~~GTnaig~al------~~~~pv 128 (638)
T PRK11388 65 WEYMADRE-CALLILD--E-TG---CILSRNGDPQTLQQLSALGFND-G--TYCAEGIIGTNALSLAA------ISGQPV 128 (638)
T ss_pred HHHhcCCC-cEEEEEc--C-Cc---eEEEEeCCHHHHHHHHHcCCcc-C--CccchhccCcCHHHHHH------hcCCce
Confidence 33444444 6777774 3 44 89999988888776654 1110 0 00111111111122111 123455
Q ss_pred eecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEe
Q 010368 383 MLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYC 419 (512)
Q Consensus 383 ~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs 419 (512)
.+...+-..+ .+......+.||.|.+|+++|+++
T Consensus 129 ~v~g~EH~~~---~~~~~~c~aaPI~d~~G~liGvl~ 162 (638)
T PRK11388 129 KTMGDQHFKQ---ALHNWAFCATPVFDSKGRLTGTIA 162 (638)
T ss_pred EEecHHHHHH---hccCceEEeeEEEcCCCCEEEEEE
Confidence 5655543333 344456678999999999999996
No 287
>KOG2118 consensus Predicted membrane protein, contains two CBS domains [Function unknown]
Probab=24.21 E-value=1.6e+02 Score=31.79 Aligned_cols=110 Identities=12% Similarity=0.174 Sum_probs=69.6
Q ss_pred CCceEeCCCCCHH-HHHHHHHhCCCceeeEEecCCCCCCcCeEEEeeehhhHHHHHHhhcccCCCCcccccCccccccCc
Q 010368 289 RPLVYAGPNDNLK-DVARKILHNEVATVPIIHSSSQDGSFPQLLHIASLSGILKCVCRYFRHCSSSLPILKLPICAIPVG 367 (512)
Q Consensus 289 ~~~i~v~~~~sl~-da~~~m~~~~i~~lpVvd~d~~~g~~~~lvGiis~~dIl~~l~~~~~~~~~~~~~l~~~v~~l~ig 367 (512)
..+..+..+..+. +.+..+.+++.+++||.+. +.. ..+|.+=....++++.... ++-..
T Consensus 214 ~~~f~l~~n~~l~~~~~~~i~~~g~sripv~~~--~~~---~~i~~~L~~~~~~~~~~~~-------~~~~~-------- 273 (498)
T KOG2118|consen 214 EDVFALDANTKLDRETVGEIVKHGYSRIPVYEQ--EPK---NKIGGLLVMNLLRLLQVEV-------PLEPL-------- 273 (498)
T ss_pred hhheeeccccccchHHHhhHhhcCcceeeeccC--ccc---chhhHHHHhhhhhhhcccc-------ccccc--------
Confidence 4566666677776 6666777999999999953 221 2333322222222221110 11111
Q ss_pred ccccccCCCCCCCceeecCCCCHHHHHHHHHhcCCCEEEEECCCCcEEEEEeHHHH
Q 010368 368 TWVPKIGEPNRRPLAMLRPSASLSAALNLLVQAQVSSIPIVDDNDSLLDIYCRSDI 423 (512)
Q Consensus 368 ~~~~~v~~~m~~~~~~v~~~~~l~~a~~~m~~~~~~~lpVvd~~g~liGivs~~Di 423 (512)
.+.+.+...+..++.++++.+.++.+...+.+.+.|.. ...-+++++..|+
T Consensus 274 ----~v~~~~~~~l~~vp~~~~~~~~l~~~~~~~~H~~~v~~-~~~~~~~~~l~~~ 324 (498)
T KOG2118|consen 274 ----PVSESALLRLPLVPENMPLLDLLNEFQKGKSHMAVVRN-GHVDIFVLTLEDL 324 (498)
T ss_pred ----cchhhhccccccCCCcccHHHHHHHHhhhhceeEEEec-CCcceeeEeccch
Confidence 22333566778899999999999999888777777766 5567899998887
No 288
>PF00127 Copper-bind: Copper binding proteins, plastocyanin/azurin family; InterPro: IPR000923 Blue (type 1) copper proteins are small proteins which bind a single copper atom and which are characterised by an intense electronic absorption band near 600 nm [, ]. The most well known members of this class of proteins are the plant chloroplastic plastocyanins, which exchange electrons with cytochrome c6, and the distantly related bacterial azurins, which exchange electrons with cytochrome c551. This family of proteins also includes amicyanin from bacteria such as Methylobacterium extorquens or Paracoccus versutus (Thiobacillus versutus) that can grow on methylamine; auracyanins A and B from Chloroflexus aurantiacus []; blue copper protein from Alcaligenes faecalis; cupredoxin (CPC) from Cucumis sativus (Cucumber) peelings []; cusacyanin (basic blue protein; plantacyanin, CBP) from cucumber; halocyanin from Natronomonas pharaonis (Natronobacterium pharaonis) [], a membrane associated copper-binding protein; pseudoazurin from Pseudomonas; rusticyanin from Thiobacillus ferrooxidans []; stellacyanin from Rhus vernicifera (Japanese lacquer tree); umecyanin from the roots of Armoracia rusticana (Horseradish); and allergen Ra3 from ragweed. This pollen protein is evolutionary related to the above proteins, but seems to have lost the ability to bind copper. Although there is an appreciable amount of divergence in the sequences of all these proteins, the copper ligand sites are conserved.; GO: 0005507 copper ion binding, 0009055 electron carrier activity; PDB: 1UAT_A 1CUO_A 1PLC_A 4PCY_A 3PCY_A 1PND_A 1PNC_A 1JXG_A 6PCY_A 1TKW_A ....
Probab=23.04 E-value=1.4e+02 Score=24.12 Aligned_cols=17 Identities=18% Similarity=0.196 Sum_probs=10.8
Q ss_pred eEEEEecCC-CcEEEEEE
Q 010368 27 PMRFVWPYG-GRSVFLSG 43 (512)
Q Consensus 27 ~~~f~w~~~-~~~V~l~G 43 (512)
.++|.|... +.+|.+.-
T Consensus 26 tV~~~n~~~~~Hnv~~~~ 43 (99)
T PF00127_consen 26 TVTFVNNDSMPHNVVFVA 43 (99)
T ss_dssp EEEEEEESSSSBEEEEET
T ss_pred EEEEEECCCCCceEEEec
Confidence 578888644 46666554
No 289
>cd00503 Frataxin Frataxin is a nuclear-encoded mitochondrial protein implicated in Friedreich's ataxia (FRDA), an human autosomal recessive neurodegenerative disease; Frataxin is found in eukaryotes and in purple bacteria; lack of frataxin causes iron to accumulate in the mitochondrial matrix suggesting that frataxin is involved in mitochondrial iron homeostasis and possibly in iron transport; the domain has an alpha-beta fold consisting of two helices flanking an antiparallel beta sheet.
Probab=22.37 E-value=50 Score=27.55 Aligned_cols=18 Identities=17% Similarity=0.519 Sum_probs=14.1
Q ss_pred CCceEEEEEEECCEEeeCC
Q 010368 71 PPGYHQYKFCVDGEWRHDE 89 (512)
Q Consensus 71 ~~g~~~ykf~VDg~w~~d~ 89 (512)
|-|-|+|.|. ||+|++.-
T Consensus 65 p~G~~hf~~~-~~~W~~~r 82 (105)
T cd00503 65 KVGGYHFDYK-NGKWICTR 82 (105)
T ss_pred CCCCccceec-CCEEEECC
Confidence 4477888885 99999874
No 290
>PRK10301 hypothetical protein; Provisional
Probab=21.39 E-value=4.9e+02 Score=22.27 Aligned_cols=47 Identities=19% Similarity=0.293 Sum_probs=27.0
Q ss_pred cEEEEEEccC-CCCCCCCCCccCCCCCeEEEEEE--eCCceEEEEEEE---CCE
Q 010368 37 RSVFLSGSFN-RWSELLPMSPVEGCPTVFQIIWS--IPPGYHQYKFCV---DGE 84 (512)
Q Consensus 37 ~~V~l~Gsf~-~W~~~~~m~~~~~~~~~f~~~~~--L~~g~~~ykf~V---Dg~ 84 (512)
..|.|.+.=- .|... +.......+..+.+.++ |++|.|.-.|.| ||+
T Consensus 61 s~i~v~~~~g~~v~~~-~~~~~~~~~~~~~v~l~~~L~~G~YtV~Wrvvs~DGH 113 (124)
T PRK10301 61 SGATITGPKQENIKTL-PAKRNEQDQKQLIVPLADSLKPGTYTVDWHVVSVDGH 113 (124)
T ss_pred cEEEEEcCCCCEeccC-CccccCCCCcEEEEECCCCCCCccEEEEEEEEecCCC
Confidence 4677775421 23322 11111223456777763 889999988887 664
No 291
>TIGR02657 amicyanin amicyanin. Members of this family are amicyanin, a type I blue copper protein that accepts electrons from the tryptophan tryptophylquinone (TTQ) cofactor of the methylamine dehydrogenase light chain and then transfers them to the heme group of cytochrome c-551i. Amicyanin, methylamine dehydrogenase, and cytochrome c-551i are periplasmic and form a complex. This system has been studied primarily in Paracoccus denitrificans and Methylobacterium extorquens. Related type I blue copper proteins include plastocyanin, pseudoazurin, halocyanin, etc.
Probab=21.21 E-value=2.4e+02 Score=22.03 Aligned_cols=48 Identities=13% Similarity=0.242 Sum_probs=26.0
Q ss_pred eEEEEecCC-CcEEE-EEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEE
Q 010368 27 PMRFVWPYG-GRSVF-LSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYK 78 (512)
Q Consensus 27 ~~~f~w~~~-~~~V~-l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~yk 78 (512)
.++|++..+ +.+|. ..|.+.++...-++. ..+..|+.++. .||.|.|.
T Consensus 20 tVt~~N~d~~~Hnv~~~~g~~~~~~~~~~~~---~~g~~~~~tf~-~~G~y~y~ 69 (83)
T TIGR02657 20 TVTWINREAMPHNVHFVAGVLGEAALKGPMM---KKEQAYSLTFT-EAGTYDYH 69 (83)
T ss_pred EEEEEECCCCCccEEecCCCCcccccccccc---CCCCEEEEECC-CCEEEEEE
Confidence 467777765 46664 445554443222222 12456776665 57877764
No 292
>PF04985 Phage_tube: Phage tail tube protein FII; InterPro: IPR006498 This entry is represented by Bacteriophage P2, FII, the major tail tube protein. The characteristics of the protein distribution suggest prophage matches in addition to the phage matches. The tails of some phage are contractile. These sequences represent the tail tube, or tail core, protein of the contractile tail of phage P2, and homologous proteins from other phage.
Probab=20.97 E-value=3.3e+02 Score=24.43 Aligned_cols=48 Identities=21% Similarity=0.206 Sum_probs=28.8
Q ss_pred cEEEEEEccCCCCCCCCCCccCCCCCeEEEEEEeCCceEEEEEEECCE--EeeCCCC
Q 010368 37 RSVFLSGSFNRWSELLPMSPVEGCPTVFQIIWSIPPGYHQYKFCVDGE--WRHDEHQ 91 (512)
Q Consensus 37 ~~V~l~Gsf~~W~~~~~m~~~~~~~~~f~~~~~L~~g~~~ykf~VDg~--w~~d~~~ 91 (512)
-.+.+.|.+..|... .+.+- +....++.+. -+.||+.+||+ |..|..+
T Consensus 98 ~~~~~~G~~~~~~~g-~~k~g--~~~~~~~~~~----v~yyk~~idG~~~~eiD~~n 147 (167)
T PF04985_consen 98 VVAVIRGRIKSVDPG-EWKPG--EKTETSIEFS----VTYYKLEIDGKEIIEIDKLN 147 (167)
T ss_pred EEEEEEEEEEeeCCc-ccCcC--ccccceEEEE----EEEEEEEECCEEEEEEECcc
Confidence 346788888887664 33321 2223333332 48999999997 5555443
Done!