Your job contains 1 sequence.
>010373
MAGQSNINYGKRTHFQSDAATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRKIGSIIG
KGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRV
HDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE
HLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPSRSQHLLLSSSSNIYQSSGVYLS
APLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSS
GAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGC
LIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLR
ANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSYATGNLPGRDSYGSY
GGSLSGGGNAYGAYGDHSSGRGLSGHRKNHGY
The BLAST search returned 4 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= 010373
(512 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
TAIR|locus:2035807 - symbol:AT1G14170 "AT1G14170" species... 1240 2.9e-126 1
TAIR|locus:2150956 - symbol:AT5G15270 "AT5G15270" species... 734 1.2e-72 1
TAIR|locus:2161413 - symbol:AT5G46190 "AT5G46190" species... 296 6.4e-45 2
TAIR|locus:2056951 - symbol:AT2G03110 "AT2G03110" species... 400 3.0e-37 1
TAIR|locus:2168367 - symbol:RCF3 "AT5G53060" species:3702... 239 5.4e-35 2
TAIR|locus:2831364 - symbol:AT4G18375 "AT4G18375" species... 253 8.2e-33 2
TAIR|locus:2017612 - symbol:AT1G51580 "AT1G51580" species... 223 2.5e-29 2
TAIR|locus:2084908 - symbol:FLK "AT3G04610" species:3702 ... 228 1.9e-18 2
TAIR|locus:2066020 - symbol:AT2G22600 "AT2G22600" species... 165 1.5e-14 2
RGD|1307430 - symbol:Pcbp3 "poly(rC) binding protein 3" s... 144 2.3e-12 2
UNIPROTKB|F1NPL4 - symbol:PCBP3 "Uncharacterized protein"... 137 2.5e-12 2
UNIPROTKB|F1NPL2 - symbol:PCBP3 "Uncharacterized protein"... 137 3.6e-12 2
UNIPROTKB|Q17QV0 - symbol:PCBP3 "Uncharacterized protein"... 144 4.0e-12 2
UNIPROTKB|E9PFP8 - symbol:PCBP3 "Poly(rC)-binding protein... 144 4.0e-12 2
UNIPROTKB|E2RCH9 - symbol:PCBP3 "Uncharacterized protein"... 144 4.5e-12 2
UNIPROTKB|E2QUE1 - symbol:PCBP3 "Uncharacterized protein"... 144 4.5e-12 2
UNIPROTKB|P57721 - symbol:PCBP3 "Poly(rC)-binding protein... 144 4.5e-12 2
MGI|MGI:1890470 - symbol:Pcbp3 "poly(rC) binding protein ... 144 4.5e-12 2
UNIPROTKB|D4A1P3 - symbol:Pcbp3 "Protein Pcbp3" species:1... 144 4.5e-12 2
ZFIN|ZDB-GENE-050522-157 - symbol:pcbp3 "poly(rC) binding... 143 5.9e-12 2
UNIPROTKB|G3V0E8 - symbol:PCBP2 "Poly(RC) binding protein... 134 1.0e-11 2
ZFIN|ZDB-GENE-030131-563 - symbol:pcbp2 "poly(rC) binding... 137 1.2e-11 2
UNIPROTKB|E2RCF9 - symbol:PCBP2 "Uncharacterized protein"... 134 1.2e-11 2
UNIPROTKB|Q3SYT9 - symbol:PCBP2 "Poly(RC) binding protein... 134 1.5e-11 2
UNIPROTKB|J3QT27 - symbol:PCBP3 "Poly(rC)-binding protein... 137 1.6e-11 2
MGI|MGI:108202 - symbol:Pcbp2 "poly(rC) binding protein 2... 134 1.7e-11 2
UNIPROTKB|J9P8W8 - symbol:PCBP2 "Uncharacterized protein"... 131 2.2e-11 2
ZFIN|ZDB-GENE-070424-78 - symbol:zgc:162999 "zgc:162999" ... 146 2.9e-11 2
UNIPROTKB|E1BVU6 - symbol:LOC100858906 "Uncharacterized p... 135 3.4e-11 2
UNIPROTKB|H3BRU6 - symbol:PCBP2 "Poly(rC)-binding protein... 127 5.1e-11 2
UNIPROTKB|F8VZX2 - symbol:PCBP2 "Poly(rC)-binding protein... 127 6.7e-11 2
UNIPROTKB|B4DXP5 - symbol:PCBP2 "Poly(rC)-binding protein... 127 6.8e-11 2
UNIPROTKB|Q5E9A3 - symbol:PCBP1 "Poly(rC)-binding protein... 130 7.5e-11 2
UNIPROTKB|Q15365 - symbol:PCBP1 "Poly(rC)-binding protein... 130 7.5e-11 2
UNIPROTKB|I3LEC2 - symbol:PCBP1 "Uncharacterized protein"... 130 7.5e-11 2
MGI|MGI:1345635 - symbol:Pcbp1 "poly(rC) binding protein ... 130 7.5e-11 2
RGD|1561319 - symbol:Pcbp1 "poly(rC) binding protein 1" s... 130 7.5e-11 2
UNIPROTKB|J9P7Y9 - symbol:PCBP1 "Uncharacterized protein"... 130 7.5e-11 2
WB|WBGene00003978 - symbol:pes-4 species:6239 "Caenorhabd... 131 9.1e-11 2
UNIPROTKB|F1SFQ4 - symbol:PCBP2 "Uncharacterized protein"... 127 9.8e-11 2
UNIPROTKB|Q15366 - symbol:PCBP2 "Poly(rC)-binding protein... 127 1.1e-10 2
RGD|1309626 - symbol:Pcbp2 "poly(rC) binding protein 2" s... 127 1.1e-10 2
UNIPROTKB|F1NPL3 - symbol:PCBP3 "Uncharacterized protein"... 130 1.9e-10 2
UNIPROTKB|P57723 - symbol:PCBP4 "Poly(rC)-binding protein... 120 4.8e-10 2
UNIPROTKB|I3LRN5 - symbol:PCBP4 "Uncharacterized protein"... 120 4.8e-10 2
UNIPROTKB|F8VRG9 - symbol:PCBP2 "Poly(rC)-binding protein... 119 5.7e-10 2
UNIPROTKB|E2RG64 - symbol:PCBP4 "Uncharacterized protein"... 120 7.7e-10 2
UNIPROTKB|Q0VCU0 - symbol:PCBP4 "Poly(rC)-binding protein... 120 9.8e-10 2
MGI|MGI:1890471 - symbol:Pcbp4 "poly(rC) binding protein ... 120 9.8e-10 2
RGD|1307910 - symbol:Pcbp4 "poly(rC) binding protein 4" s... 120 9.8e-10 2
UNIPROTKB|C9J0A4 - symbol:PCBP4 "Poly(rC)-binding protein... 120 2.3e-09 2
UNIPROTKB|F8VWQ4 - symbol:PCBP2 "Poly(rC)-binding protein... 110 5.1e-09 2
UNIPROTKB|Q9UNW9 - symbol:NOVA2 "RNA-binding protein Nova... 124 8.8e-09 2
TAIR|locus:2120755 - symbol:PEP "AT4G26000" species:3702 ... 166 1.0e-08 2
UNIPROTKB|F1RM28 - symbol:NOVA2 "Uncharacterized protein"... 124 1.2e-08 2
RGD|1308032 - symbol:Nova2 "neuro-oncological ventral ant... 122 1.7e-08 2
UNIPROTKB|F1MS84 - symbol:NOVA2 "Uncharacterized protein"... 120 2.1e-08 2
UNIPROTKB|F1PUD6 - symbol:NOVA2 "Uncharacterized protein"... 120 2.6e-08 2
UNIPROTKB|D3DS81 - symbol:NOVA1 "Neuro-oncological ventra... 109 7.2e-08 2
UNIPROTKB|G4N5A5 - symbol:MGG_16887 "Uncharacterized prot... 108 8.5e-08 2
ZFIN|ZDB-GENE-040426-2122 - symbol:zgc:65870 "zgc:65870" ... 121 1.1e-07 2
UNIPROTKB|G3X7R5 - symbol:NOVA1 "Uncharacterized protein"... 93 1.2e-07 3
UNIPROTKB|J9NXS6 - symbol:NOVA1 "Uncharacterized protein"... 93 1.2e-07 3
MGI|MGI:104297 - symbol:Nova1 "neuro-oncological ventral ... 93 1.2e-07 3
UNIPROTKB|D4AAF8 - symbol:Nova1 "RNA-binding protein Nova... 93 1.2e-07 3
UNIPROTKB|F8VXH9 - symbol:PCBP2 "Poly(rC)-binding protein... 127 2.1e-07 1
ZFIN|ZDB-GENE-060526-113 - symbol:nova1 "neuro-oncologica... 111 2.4e-07 2
ASPGD|ASPL0000075803 - symbol:AN4546 species:162425 "Emer... 104 2.8e-07 2
UNIPROTKB|E2RA50 - symbol:E2RA50 "Uncharacterized protein... 103 4.0e-07 2
UNIPROTKB|H9L011 - symbol:LOC426023 "Uncharacterized prot... 134 4.8e-07 1
MGI|MGI:1890359 - symbol:Igf2bp3 "insulin-like growth fac... 147 5.5e-07 1
UNIPROTKB|I3LQS0 - symbol:HNRNPK "Uncharacterized protein... 103 6.7e-07 2
UNIPROTKB|J9P8W9 - symbol:IGF2BP3 "Uncharacterized protei... 146 7.1e-07 1
UNIPROTKB|P61978 - symbol:HNRNPK "Heterogeneous nuclear r... 103 7.5e-07 2
MGI|MGI:99894 - symbol:Hnrnpk "heterogeneous nuclear ribo... 103 7.5e-07 2
RGD|71058 - symbol:Hnrnpk "heterogeneous nuclear ribonucl... 103 7.5e-07 2
UNIPROTKB|Q3T0D0 - symbol:HNRNPK "Heterogeneous nuclear r... 103 7.6e-07 2
RGD|621345 - symbol:Nova1 "neuro-oncological ventral anti... 110 9.0e-07 2
UNIPROTKB|F1LMZ7 - symbol:Nova1 "RNA-binding protein Nova... 110 9.0e-07 2
UNIPROTKB|F8W0G4 - symbol:PCBP2 "Poly(rC)-binding protein... 121 9.5e-07 1
UNIPROTKB|P51513 - symbol:NOVA1 "RNA-binding protein Nova... 92 1.0e-06 3
UNIPROTKB|O00425 - symbol:IGF2BP3 "Insulin-like growth fa... 144 1.2e-06 1
UNIPROTKB|E1C453 - symbol:HNRNPK "Heterogeneous nuclear r... 103 1.2e-06 2
UNIPROTKB|B3KM64 - symbol:PCBP4 "cDNA FLJ10382 fis, clone... 98 1.3e-06 2
UNIPROTKB|J9P8J3 - symbol:J9P8J3 "Uncharacterized protein... 103 1.8e-06 3
RGD|1307004 - symbol:Fubp3 "far upstream element (FUSE) b... 121 2.0e-06 2
UNIPROTKB|G3N2N4 - symbol:NOVA1 "Uncharacterized protein"... 93 2.2e-06 2
UNIPROTKB|F1MBI6 - symbol:NOVA1 "Uncharacterized protein"... 93 2.2e-06 2
UNIPROTKB|H9L0I0 - symbol:HNRPK "Uncharacterized protein"... 103 2.5e-06 2
UNIPROTKB|H9L242 - symbol:HNRPK "Uncharacterized protein"... 103 2.5e-06 2
UNIPROTKB|Q5ZIQ3 - symbol:HNRNPK "Heterogeneous nuclear r... 103 2.5e-06 2
UNIPROTKB|F1NP94 - symbol:NOVA1 "Uncharacterized protein"... 93 2.7e-06 2
UNIPROTKB|F1SGT5 - symbol:NOVA1 "Uncharacterized protein"... 93 2.7e-06 2
UNIPROTKB|B7Z770 - symbol:NOVA1 "RNA-binding protein Nova... 92 2.8e-06 2
ZFIN|ZDB-GENE-080211-1 - symbol:nova2 "neuro-oncological ... 111 2.9e-06 2
FB|FBgn0262737 - symbol:mub "mushroom-body expressed" spe... 103 3.2e-06 2
UNIPROTKB|Q9GZT1 - symbol:PCBP4 "Poly(rC)-binding protein... 98 3.4e-06 2
ZFIN|ZDB-GENE-040426-1923 - symbol:hnrpkl "heterogeneous ... 104 4.0e-06 2
ZFIN|ZDB-GENE-040426-1926 - symbol:hnrnpk "heterogeneous ... 101 4.2e-06 2
UNIPROTKB|B4DLC0 - symbol:PCBP2 "Poly(rC)-binding protein... 134 4.4e-06 1
WARNING: Descriptions of 61 database sequences were not reported due to the
limiting value of parameter V = 100.
>TAIR|locus:2035807 [details] [associations]
symbol:AT1G14170 "AT1G14170" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0009737 "response to abscisic acid stimulus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002684
GenomeReviews:CT485782_GR GO:GO:0009737 GO:GO:0003723 EMBL:AC007576
KO:K13162 HOGENOM:HOG000240086 IPI:IPI00521103 PIR:C86275
RefSeq:NP_001117282.1 UniGene:At.43386 ProteinModelPortal:Q9XI71
SMR:Q9XI71 PRIDE:Q9XI71 EnsemblPlants:AT1G14170.3 GeneID:837976
KEGG:ath:AT1G14170 TAIR:At1g14170 OMA:GATIRVN PhylomeDB:Q9XI71
ProtClustDB:CLSN2690952 Genevestigator:Q9XI71 Uniprot:Q9XI71
Length = 479
Score = 1240 (441.6 bits), Expect = 2.9e-126, P = 2.9e-126
Identities = 254/468 (54%), Positives = 323/468 (69%)
Query: 6 NINYGKRTHFQSDAATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXX 65
NI +GKR++ QS+ NGGSKRRN DET+Q I SEDTVYRYLCP++
Sbjct: 7 NI-HGKRSNLQSEFTGNGGSKRRNLHDETDQNVIASEDTVYRYLCPVKKTGSIIGKGGEI 65
Query: 66 XXQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIV 125
Q+RSETKSN+RI+E +PGC+ER+VT+YS++E N F D GE V PA DALF+VHD +V
Sbjct: 66 AKQIRSETKSNMRINEALPGCEERVVTMYSTNEELNHFGDDGELVCPALDALFKVHDMVV 125
Query: 126 AE----DSLADD-EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
A+ D DD + GE +TVRMLVP+DQIGCVIGKGGQVIQN+R +T AQIR++KD
Sbjct: 126 ADADQDDGTDDDNDLGEKQTVTVRMLVPSDQIGCVIGKGGQVIQNLRNDTNAQIRVIKD- 184
Query: 181 HLPLCAL--SFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXX-XXXXXNIYQSSGV 237
HLP CAL S DELL + GEP VVR+AL Q+AS LH+NP +++Q +
Sbjct: 185 HLPACALTLSHDELLLIIGEPLVVREALYQVASLLHDNPSRFQHLLLSSSSSSMHQPGAM 244
Query: 238 YLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+SA L S+ NY+ RRD A AREF + +CPA RQE+GA+I+V
Sbjct: 245 LMSAALTSSHRNYAVRRDIADAREFCVCFICPAENVGGVIGKGGGFINQIRQETGATIRV 304
Query: 298 DSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQ 357
++S + DDCIIFIS+KEF+ED SP + AA+RLQ RCSEK +++ D I+TR+LV S+Q
Sbjct: 305 NTSETDDDDCIIFISSKEFYEDQSPAVNAAIRLQQRCSEKVGKDANDLAISTRLLVSSSQ 364
Query: 358 IGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTL 417
IGCLIG+GGA+ISEMRS TRA+IRIL E+VPK+A EDEEMVQITGS D A AL+QV L
Sbjct: 365 IGCLIGKGGAVISEMRSVTRANIRILQKEDVPKIAREDEEMVQITGSPDAAMKALTQVIL 424
Query: 418 RLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNS 465
RLRAN+F+ + L P PY+P + + SKY RD+ S+ NS
Sbjct: 425 RLRANSFDMDHGLVLLPTSFPYIPQVTESSSKSKYAKRDDHSKLNSNS 472
>TAIR|locus:2150956 [details] [associations]
symbol:AT5G15270 "AT5G15270" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0003723 eggNOG:NOG315872 KO:K13162
EMBL:AK228673 EMBL:AK229313 IPI:IPI00527841 RefSeq:NP_197031.3
RefSeq:NP_851040.1 UniGene:At.31826 ProteinModelPortal:Q0WNX3
SMR:Q0WNX3 PaxDb:Q0WNX3 PRIDE:Q0WNX3 EnsemblPlants:AT5G15270.1
EnsemblPlants:AT5G15270.2 GeneID:831379 KEGG:ath:AT5G15270
TAIR:At5g15270 HOGENOM:HOG000240086 InParanoid:Q0WNX3 OMA:IYSPSDE
PhylomeDB:Q0WNX3 ProtClustDB:CLSN2679973 Genevestigator:Q0WNX3
Uniprot:Q0WNX3
Length = 548
Score = 734 (263.4 bits), Expect = 1.2e-72, P = 1.2e-72
Identities = 154/329 (46%), Positives = 211/329 (64%)
Query: 8 NYGKRTHFQSDAATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXX 67
++ KR+ QSD NGGSKRR GD+ + I +DTV+RYLCP++
Sbjct: 14 SHRKRSRPQSDYDDNGGSKRRYRGDDRDSLVIDRDDTVFRYLCPVKKIGSVIGRGGDIVK 73
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
QLR++T+S IRI E +PGCDER++TIYS S+ TN F D + +SPAQDALFR+HDR+VA+
Sbjct: 74 QLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDGEKVLSPAQDALFRIHDRVVAD 133
Query: 128 DSLADDE-FGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCA 186
D+ ++D GE +T ++LVP+DQIGC++G+GGQ++QNIR+ET AQIRI+KD ++PLCA
Sbjct: 134 DARSEDSPEGEKQ-VTAKLLVPSDQIGCILGRGGQIVQNIRSETGAQIRIVKDRNMPLCA 192
Query: 187 LSFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXXXXX----XXNIYQSSG---VYL 239
L+ DEL+Q++GE +V+KAL+QIASRLHENP ++ +G +
Sbjct: 193 LNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSSSGGYPAGSLMSHAGGPRLVG 252
Query: 240 SAPLVGSYGN---------YSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQE 290
APL+GSYG Y R++ A EF +RLV P RQE
Sbjct: 253 LAPLMGSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQE 312
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFED 319
+ A+IKVDSS EG+DC+I IS +E FED
Sbjct: 313 TRATIKVDSSRTEGNDCLITISAREVFED 341
Score = 597 (215.2 bits), Expect = 4.0e-58, P = 4.0e-58
Identities = 127/239 (53%), Positives = 162/239 (67%)
Query: 241 APLVGSYGN---------YSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQES 291
APL+GSYG Y R++ A EF +RLV P RQE+
Sbjct: 254 APLMGSYGRDAGDWSRPLYQPPRNDPPATEFFIRLVSPVENIASVIGKGGALINQLRQET 313
Query: 292 GASIKVDSSGAEGDDCIIFISTKEFFEDP-SPTITAALRLQPRCSEKTERESGDPVITTR 350
A+IKVDSS EG+DC+I IS +E FED SPTI A +RLQP+CS+K ER+SG TTR
Sbjct: 314 RATIKVDSSRTEGNDCLITISAREVFEDAYSPTIEAVMRLQPKCSDKVERDSGLVSFTTR 373
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+LVPS++IGC++G+GGAII+EMR T+A+IRIL EN+PKVA +D+EMVQI+G LDVA
Sbjct: 374 LLVPSSRIGCILGKGGAIITEMRRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKE 433
Query: 411 ALSQVTLRLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSYATG 469
AL Q+T RLRAN F+REGA++A PVLPYVP++ D D Y +RD++ RGN Y G
Sbjct: 434 ALIQITSRLRANVFDREGAVSALMPVLPYVPVAPDAGDRFDYDSRDSRRLERGNPYPGG 492
Score = 242 (90.2 bits), Expect = 1.3e-17, P = 1.3e-17
Identities = 61/170 (35%), Positives = 96/170 (56%)
Query: 47 RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDS 106
R + P+ QLR ET++ I++ + ++ ++TI S+ E +FED+
Sbjct: 287 RLVSPVENIASVIGKGGALINQLRQETRATIKVDSSRTEGNDCLITI-SARE---VFEDA 342
Query: 107 GEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNI 166
SP +A+ R+ + D + D G L T R+LVP+ +IGC++GKGG +I +
Sbjct: 343 ---YSPTIEAVMRLQPK--CSDKVERDS-G-LVSFTTRLLVPSSRIGCILGKGGAIITEM 395
Query: 167 RTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216
R T+A IRIL E+LP A DE++Q++GE V ++AL+QI SRL N
Sbjct: 396 RRMTKANIRILGKENLPKVASDDDEMVQISGELDVAKEALIQITSRLRAN 445
Score = 199 (75.1 bits), Expect = 9.0e-13, P = 9.0e-13
Identities = 51/180 (28%), Positives = 85/180 (47%)
Query: 265 RLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIFI-----STKEFFED 319
R +CP R ++ + I++ + D+ +I I T F +
Sbjct: 53 RYLCPVKKIGSVIGRGGDIVKQLRNDTRSKIRIGEAIPGCDERVITIYSPSDETNAFGDG 112
Query: 320 P---SPTITAALRLQPRC----SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEM 372
SP A R+ R + + G+ +T ++LVPS QIGC++GRGG I+ +
Sbjct: 113 EKVLSPAQDALFRIHDRVVADDARSEDSPEGEKQVTAKLLVPSDQIGCILGRGGQIVQNI 172
Query: 373 RSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAA 432
RS T A IRI+ + N+P A +E++QI+G + + AL Q+ RL N + L++
Sbjct: 173 RSETGAQIRIVKDRNMPLCALNSDELIQISGEVLIVKKALLQIASRLHENPSRSQNLLSS 232
>TAIR|locus:2161413 [details] [associations]
symbol:AT5G46190 "AT5G46190" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AB006698 HSSP:Q96AE4
KO:K13162 EMBL:AY039918 EMBL:AY113859 IPI:IPI00528964
RefSeq:NP_199431.1 UniGene:At.24400 ProteinModelPortal:Q9FNK3
SMR:Q9FNK3 IntAct:Q9FNK3 PRIDE:Q9FNK3 EnsemblPlants:AT5G46190.1
GeneID:834661 KEGG:ath:AT5G46190 TAIR:At5g46190 InParanoid:Q9FNK3
OMA:GCIIGKS PhylomeDB:Q9FNK3 ProtClustDB:CLSN2916231
ArrayExpress:Q9FNK3 Genevestigator:Q9FNK3 Uniprot:Q9FNK3
Length = 644
Score = 296 (109.3 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
Identities = 79/231 (34%), Positives = 127/231 (54%)
Query: 7 INYGKRTH--FQSDAATNGGSKRRNPGDETEQRGIGSED---TVYRYLCPLRXXXXXXXX 61
+ GKRTH F+ + N ++RR E+E++ I ++D VYR LCP
Sbjct: 2 VERGKRTHNRFRDNNNDNNRNQRRRLSYESEEKKIDNKDDLVVVYRILCPSGVMGSVIGK 61
Query: 62 XXXXXXQLRSETKSNIRISETVPGCDERIVTIYSS-SEGTNLFE-DSGEF-----VSPAQ 114
+R ET++ I++ + PGC ER++TI+ S SE ++ + + E + AQ
Sbjct: 62 SGKVINLIRQETRARIKVVDPFPGCSERVITIFCSVSEKKDIVDIEYSELDYSVPLCSAQ 121
Query: 115 DALFRVHDRIVA------EDSLAD-DEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIR 167
AL +VHD IVA E++ D D+F E R+LVP+ Q VIGK G +I+NIR
Sbjct: 122 AALLKVHDAIVASLATAAENTKIDRDDFREC-----RLLVPSSQCSIVIGKSGSIIKNIR 176
Query: 168 TETRAQIRIL-KDEHLP--LCALSFDELLQVAGEPAVVRKALVQIASRLHE 215
TRA ++++ KD P CA+ FD ++ ++GE V+KAL +++ +++
Sbjct: 177 GRTRANVKVVSKDVSDPSHTCAMDFDNIVMISGETESVKKALFAVSAIMYK 227
Score = 241 (89.9 bits), Expect = 6.4e-45, Sum P(2) = 6.4e-45
Identities = 68/197 (34%), Positives = 100/197 (50%)
Query: 242 PLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV-DSS 300
P+V +G S R E + +++++C + RQ SG+ I+V DS
Sbjct: 303 PVVHGFGGSS--RSE----KLAIKVICSSSKIGRVIGKGGLTIKGIRQASGSHIEVNDSR 356
Query: 301 GAEGDDCIIFISTKEFFED-PSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIG 359
DDC+I ++ E +D S + A L LQ EK E D V ++LV S IG
Sbjct: 357 TNHDDDCVITVTATESPDDLKSMAVEAVLLLQ----EKINDEDEDKV-KMQLLVSSKVIG 411
Query: 360 CLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRL 419
C+IG+ G+IISE+R T+A I I N PK A ++E+V+I+G + AL Q+ LRL
Sbjct: 412 CIIGKSGSIISEIRKRTKADIHISKGNNTPKCADPNDELVEISGEVSNVRDALIQIVLRL 471
Query: 420 RANTF-EREGALAAHPP 435
R + +RE PP
Sbjct: 472 RDDVLRDRETGSRNQPP 488
Score = 177 (67.4 bits), Expect = 3.0e-12, Sum P(2) = 3.0e-12
Identities = 46/148 (31%), Positives = 83/148 (56%)
Query: 69 LRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAED 128
+R + S+I ++++ D+ V +++E + + S A +A+ + ++I ED
Sbjct: 342 IRQASGSHIEVNDSRTNHDDDCVITVTATESPD------DLKSMAVEAVLLLQEKINDED 395
Query: 129 SLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALS 188
+D+ + +++LV + IGC+IGK G +I IR T+A I I K + P CA
Sbjct: 396 ---EDK------VKMQLLVSSKVIGCIIGKSGSIISEIRKRTKADIHISKGNNTPKCADP 446
Query: 189 FDELLQVAGEPAVVRKALVQIASRLHEN 216
DEL++++GE + VR AL+QI RL ++
Sbjct: 447 NDELVEISGEVSNVRDALIQIVLRLRDD 474
Score = 64 (27.6 bits), Expect = 2.3e-26, Sum P(2) = 2.3e-26
Identities = 15/46 (32%), Positives = 26/46 (56%)
Query: 343 GDPVITT-RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNEN 387
G P TT + +P+ +G ++GRGG + +R + A I I ++N
Sbjct: 569 GLPQSTTMEVRIPANAVGKVMGRGGGNLDNIRRISGAMIEISDSKN 614
>TAIR|locus:2056951 [details] [associations]
symbol:AT2G03110 "AT2G03110" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0003723
EMBL:BT012113 EMBL:BT012369 IPI:IPI00542292 RefSeq:NP_178410.2
UniGene:At.23438 ProteinModelPortal:Q6NLG5 SMR:Q6NLG5
EnsemblPlants:AT2G03110.1 GeneID:814840 KEGG:ath:AT2G03110
TAIR:At2g03110 InParanoid:Q6NLG5 PhylomeDB:Q6NLG5
Genevestigator:Q6NLG5 Uniprot:Q6NLG5
Length = 153
Score = 400 (145.9 bits), Expect = 3.0e-37, P = 3.0e-37
Identities = 84/151 (55%), Positives = 112/151 (74%)
Query: 77 IRISETVPGCDERIVTIYSSSEGTNLFEDSGE-FVSPAQDALFRVHDRIVAE-----DSL 130
+R++E +PGCDER+VTIYS+SE N ED E FV PA DALF+VHD +V E D
Sbjct: 1 MRVNEALPGCDERVVTIYSNSEERNRIEDDNEDFVCPAFDALFKVHDMVVVEEFDDDDDY 60
Query: 131 AD-DEFGE-LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL- 187
D DE+ E T++TVRMLVP+DQIG +IGKGG +IQ +R +T AQIR+ ++++LP+CAL
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALA 119
Query: 188 -SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S DELLQ+ G+P+ VR+AL Q+A L+ NP
Sbjct: 120 LSHDELLQIIGDPSAVREALYQVAFLLYNNP 150
Score = 161 (61.7 bits), Expect = 4.4e-11, P = 4.4e-11
Identities = 38/90 (42%), Positives = 52/90 (57%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPK--VA 392
++ E G V+T R+LVPS QIG LIG+GG II +R+ T A IR+ N+N+P +A
Sbjct: 61 NDNDEYSEGQTVVTVRMLVPSDQIGYLIGKGGPIIQTLRNDTNAQIRV-RNDNLPMCALA 119
Query: 393 YEDEEMVQITGSLDVASSALSQVTLRLRAN 422
+E++QI G AL QV L N
Sbjct: 120 LSHDELLQIIGDPSAVREALYQVAFLLYNN 149
>TAIR|locus:2168367 [details] [associations]
symbol:RCF3 "AT5G53060" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0003723 EMBL:AY062686
EMBL:BT008402 IPI:IPI00520369 RefSeq:NP_200118.3 UniGene:At.27262
ProteinModelPortal:Q8W4B1 SMR:Q8W4B1 IntAct:Q8W4B1 PaxDb:Q8W4B1
PRIDE:Q8W4B1 EnsemblPlants:AT5G53060.1 GeneID:835386
KEGG:ath:AT5G53060 TAIR:At5g53060 eggNOG:NOG293832
InParanoid:Q8W4B1 OMA:THIRILP PhylomeDB:Q8W4B1
ProtClustDB:CLSN2680526 Genevestigator:Q8W4B1 Uniprot:Q8W4B1
Length = 652
Score = 239 (89.2 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 69/232 (29%), Positives = 109/232 (46%)
Query: 4 QSNINYGKRTHFQSDAATN-----GGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXX 58
+S Y HF N GG G ++ T YR LC
Sbjct: 23 RSKPRYNNNYHFGGGGGGNNRYRGGGGGGGGNGRPSKSHPETMATTTYRILCHDAKAGGV 82
Query: 59 XXXXXXXXXQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALF 118
+R T + I + E VPG ERI+ I S + + F SPAQ+ALF
Sbjct: 83 IGKSGTIIKSIRQHTGAWINVHELVPGDAERIIEI-SDNRRRDPDGRMPSF-SPAQEALF 140
Query: 119 RVHDRIVAEDSL---------ADDEFGELT----LITVRMLVPADQIGCVIGKGGQVIQN 165
VHDRI+ ++ ++++G + + R++V +GC++GKGG++I+
Sbjct: 141 SVHDRILESEAQFGYGGPPPEEEEDYGGVRPGGGRVVTRLVVSRMHVGCLLGKGGKIIEQ 200
Query: 166 IRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216
+R ET+ IRIL ++ +LP C +E++Q+ GE V+ AL ++SRL E+
Sbjct: 201 MRIETKTHIRILPRESNLPRCVSLSEEIVQIVGELNAVKNALAIVSSRLRES 252
Score = 214 (80.4 bits), Expect = 5.4e-35, Sum P(2) = 5.4e-35
Identities = 57/178 (32%), Positives = 93/178 (52%)
Query: 259 AREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIFISTKEFFE 318
+ E +++CPA + E G ++V A D+ II IS++E +
Sbjct: 322 SEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDVRVSDPVAGSDEQIITISSEEAPD 381
Query: 319 DPS-PTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATR 377
DP P A L +Q + + + D +ITTR+LVPS CL G+ G++ SE+ T
Sbjct: 382 DPFFPAQEALLHIQTQIIDLIPDK--DNLITTRLLVPSRDSICLEGKAGSV-SEISRLTG 438
Query: 378 ASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHPP 435
S++IL E +P+ A ++ ++QITG + A AL ++TL LR++ F +E + PP
Sbjct: 439 TSVQILAREEIPRCASINDVVIQITGEIRAAREALVELTLLLRSHMF-KELSQKETPP 495
Score = 211 (79.3 bits), Expect = 2.0e-14, Sum P(2) = 2.0e-14
Identities = 64/199 (32%), Positives = 99/199 (49%)
Query: 22 NGGSKRRNPGDETEQRGIG----SEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNI 77
N S++ N +E +G SE+ V++ LCP L++E ++
Sbjct: 299 NFSSRQSNYAEEAPAVPVGENVYSEELVFQILCPADKIVRVVGESQGIIDLLQNEIGVDV 358
Query: 78 RISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGE 137
R+S+ V G DE+I+TI SS E D F PAQ+AL + +I+ D + D +
Sbjct: 359 RVSDPVAGSDEQIITI-SSEEAP----DDPFF--PAQEALLHIQTQII--DLIPDKD--- 406
Query: 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAG 197
LIT R+LVP+ C+ GK G V + R T ++IL E +P CA D ++Q+ G
Sbjct: 407 -NLITTRLLVPSRDSICLEGKAGSVSEISRL-TGTSVQILAREEIPRCASINDVVIQITG 464
Query: 198 EPAVVRKALVQIASRLHEN 216
E R+ALV++ L +
Sbjct: 465 EIRAAREALVELTLLLRSH 483
Score = 172 (65.6 bits), Expect = 1.2e-09, P = 1.2e-09
Identities = 46/134 (34%), Positives = 71/134 (52%)
Query: 340 RESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNE-NVPKVAYEDEEM 398
R G V+T R++V +GCL+G+GG II +MR T+ IRIL E N+P+ EE+
Sbjct: 170 RPGGGRVVT-RLVVSRMHVGCLLGKGGKIIEQMRIETKTHIRILPRESNLPRCVSLSEEI 228
Query: 399 VQITGSLDVASSALSQVTLRLRANTF-EREGALA-AHPPVLPYVPMSLDITDGSKYGNRD 456
VQI G L+ +AL+ V+ RLR + +R +H P + D + + D
Sbjct: 229 VQIVGELNAVKNALAIVSSRLRESQHRDRSNFQGRSHSPERSFAAAGDDYMPQLRRQSSD 288
Query: 457 NQSRG--RGNSYAT 468
RG R N++++
Sbjct: 289 RFPRGNFRNNNFSS 302
Score = 48 (22.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 15/66 (22%), Positives = 37/66 (56%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T +++P A + L+ + ++++ + AS+ I+ E+ P+ E + +++I+G+ +
Sbjct: 578 TLEVVLPEAVVPKLVTKSRNKLAQISEWSGASVTIV--EDRPE---ETQNIIRISGTPEQ 632
Query: 408 ASSALS 413
A A S
Sbjct: 633 AERAQS 638
>TAIR|locus:2831364 [details] [associations]
symbol:AT4G18375 "AT4G18375" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:CP002687
GenomeReviews:CT486007_GR GO:GO:0003723 EMBL:AL161548 EMBL:AL021710
KO:K13162 EMBL:AY133701 EMBL:BT001108 IPI:IPI00539414
IPI:IPI00548636 RefSeq:NP_193572.1 RefSeq:NP_849406.1
UniGene:At.32914 ProteinModelPortal:P58223 SMR:P58223
MEROPS:S01.441 PaxDb:P58223 EnsemblPlants:AT4G18375.2 GeneID:827566
KEGG:ath:AT4G18375 GeneFarm:2264 TAIR:At4g18375 eggNOG:NOG297635
HOGENOM:HOG000084632 InParanoid:P58223 OMA:ANICISK PhylomeDB:P58223
ProtClustDB:CLSN2686050 Genevestigator:P58223 GermOnline:AT4G18375
Uniprot:P58223
Length = 606
Score = 253 (94.1 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 70/222 (31%), Positives = 116/222 (52%)
Query: 11 KRTHFQ-SDAATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQL 69
KR Q +++ +N KRR D+ + E VYR LCP+ +
Sbjct: 6 KRKQIQRNNSESNRNQKRRISHDKINR----DELVVYRILCPIDVVGGVIGKSGKVINAI 61
Query: 70 RSETKSNIRISETVPGCDERIVTIYSS----SEGTNLFEDSGEFVSPAQDALFRVHDRIV 125
R TK+ I++ + + GC +R++TIY S E + E + AQDAL +V+D IV
Sbjct: 62 RHNTKAKIKVFDQLHGCSQRVITIYCSVKEKQEEIGFTKSENEPLCCAQDALLKVYDAIV 121
Query: 126 AEDSLADDEFGELTLIT------VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-K 178
A +D+E T + R+LVP Q +IGK G+ I+ IR TRA ++++ K
Sbjct: 122 A----SDEENNTKTNVDRDDNKECRLLVPFSQSSSLIGKAGENIKRIRRRTRASVKVVSK 177
Query: 179 DEHLP--LCALSFDELLQVAGEPAVVRKALVQIASRLHE-NP 217
D P +CA+ +D ++ ++GEP V++AL +++ +++ NP
Sbjct: 178 DVSDPSHVCAMEYDNVVVISGEPESVKQALFAVSAIMYKINP 219
Score = 176 (67.0 bits), Expect = 8.2e-33, Sum P(2) = 8.2e-33
Identities = 55/199 (27%), Positives = 98/199 (49%)
Query: 240 SAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDS 299
S P+ +G S R E E +++CP R+ SG+ I+V+
Sbjct: 296 SLPVTHGFGGSS--RSE----ELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVND 349
Query: 300 SGAE-GDD-CIIFISTKEFFED-PSPTITAALRLQPRCSEKTERESGDPVITTRILVPSA 356
S + GDD C+I ++ E +D S + A L LQ +++ + E+ + ++LV S
Sbjct: 350 SRTKCGDDECVIIVTATESPDDMKSMAVEAVLLLQEYINDE-DAEN----VKMQLLVSSK 404
Query: 357 QIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVT 416
IGC+IG+ G++I+E+R T A+I I + +++V+++G + AL Q+
Sbjct: 405 VIGCVIGKSGSVINEIRKRTNANICISKGKK--------DDLVEVSGEVSSVRDALIQIV 456
Query: 417 LRLRANTFEREGALAAHPP 435
LRLR + + ++A P
Sbjct: 457 LRLREDVLGDKDSVATRKP 475
Score = 169 (64.5 bits), Expect = 2.6e-10, Sum P(2) = 2.6e-10
Identities = 55/177 (31%), Positives = 90/177 (50%)
Query: 41 SEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVPGC-DERIVTIYSSSEG 99
SE+ V++ LCPL ++R + S I ++++ C D+ V I +++E
Sbjct: 309 SEELVFKVLCPLCNIMRVIGKGGSTIKRIREASGSCIEVNDSRTKCGDDECVIIVTATES 368
Query: 100 TNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKG 159
+ + S A +A+ + + I ED A++ + +++LV + IGCVIGK
Sbjct: 369 PD------DMKSMAVEAVLLLQEYINDED--AEN-------VKMQLLVSSKVIGCVIGKS 413
Query: 160 GQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216
G VI IR T A I I K + D+L++V+GE + VR AL+QI RL E+
Sbjct: 414 GSVINEIRKRTNANICISKGKK--------DDLVEVSGEVSSVRDALIQIVLRLRED 462
Score = 53 (23.7 bits), Expect = 6.0e-20, Sum P(2) = 6.0e-20
Identities = 19/70 (27%), Positives = 31/70 (44%)
Query: 243 LVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGA 302
++GS G YS R +S+ +L ++ PA R+ SGA I++ +S
Sbjct: 520 VLGSTGPYSYGRLPSSS---ALEILIPAHAMSKVMGKGGGNLENIRRISGAMIEISASKT 576
Query: 303 EGDDCIIFIS 312
D I +S
Sbjct: 577 SHGDHIALLS 586
Score = 52 (23.4 bits), Expect = 7.6e-20, Sum P(2) = 7.6e-20
Identities = 14/56 (25%), Positives = 31/56 (55%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
IL+P+ + ++G+GG + +R + A I I + K ++ D + ++G+L+
Sbjct: 540 ILIPAHAMSKVMGKGGGNLENIRRISGAMIEI----SASKTSHGDH-IALLSGTLE 590
>TAIR|locus:2017612 [details] [associations]
symbol:AT1G51580 "AT1G51580" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 EMBL:CP002684 GenomeReviews:CT485782_GR EMBL:AC025294
EMBL:AC024261 GO:GO:0003723 UniGene:At.37784 eggNOG:NOG285495
UniGene:At.66909 KO:K13162 EMBL:BT008776 EMBL:AK227874
IPI:IPI00539866 PIR:D96554 RefSeq:NP_175569.1
ProteinModelPortal:Q9C553 SMR:Q9C553 IntAct:Q9C553 PaxDb:Q9C553
PRIDE:Q9C553 EnsemblPlants:AT1G51580.1 GeneID:841583
KEGG:ath:AT1G51580 TAIR:At1g51580 HOGENOM:HOG000077702
InParanoid:Q9C553 OMA:PGFDRPP PhylomeDB:Q9C553
ProtClustDB:CLSN2679414 Genevestigator:Q9C553 Uniprot:Q9C553
Length = 621
Score = 223 (83.6 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 64/185 (34%), Positives = 88/185 (47%)
Query: 261 EFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIFISTKEFFEDP 320
E + RL+CPA + ESGASIKV + ++ II IS +E E
Sbjct: 275 EVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVISARENLERR 334
Query: 321 -SPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRAS 379
S +R+ R E S + R+LV S IG L+G+GG +ISEMR AT AS
Sbjct: 335 HSLAQDGVMRVHNRIVEIGFEPSA--AVVARLLVHSPYIGRLLGKGGHLISEMRRATGAS 392
Query: 380 IRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFER----EGALAAHPP 435
IR+ + K + +E+VQ+ G+L AL Q+ RLR F +G PP
Sbjct: 393 IRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLREAMFPGRLPFQGMGGPPPP 452
Query: 436 VL-PY 439
+ PY
Sbjct: 453 FMGPY 457
Score = 192 (72.6 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 57/179 (31%), Positives = 86/179 (48%)
Query: 37 RGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVPGCDERIVTIYSS 96
R + E+ +R LCP L++E+ ++I++S+ +ERI+ I S+
Sbjct: 269 RPVVEEEVAFRLLCPADKVGSLIGKGGAVVRALQNESGASIKVSDPTHDSEERIIVI-SA 327
Query: 97 SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVI 156
E NL S AQD + RVH+RIV + F + R+LV + IG ++
Sbjct: 328 RE--NLERRH----SLAQDGVMRVHNRIV------EIGFEPSAAVVARLLVHSPYIGRLL 375
Query: 157 GKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215
GKGG +I +R T A IR+ + DE++QV G V+ AL QI RL E
Sbjct: 376 GKGGHLISEMRRATGASIRVFAKDQATKYESQHDEIVQVIGNLKTVQDALFQILCRLRE 434
Score = 177 (67.4 bits), Expect = 2.5e-29, Sum P(2) = 2.5e-29
Identities = 54/152 (35%), Positives = 85/152 (55%)
Query: 70 RSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDS 129
+ + +SN+ SE PG +E S GT+ +D E S AQ AL RV +RIV D
Sbjct: 75 KKKDESNVCDSEN-PGSEEPKQEKGSECAGTSGGDDE-EAPSSAQMALLRVFERIVFGDD 132
Query: 130 LAD---DEF--GELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPL 184
A DE GE + RM+V +Q+ ++ KGG++IQ IR ++ A +RI + +P
Sbjct: 133 AATVDGDELDKGESEGLC-RMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPP 191
Query: 185 CALSFDELLQVAGEPAVVRKALVQIASRLHEN 216
CA D ++Q+ G+ + V+KAL+ + + L E+
Sbjct: 192 CAFPGDVVIQMNGKFSSVKKALLLVTNCLQES 223
Score = 99 (39.9 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 21/78 (26%), Positives = 41/78 (52%)
Query: 339 ERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM 398
E + G+ R++V Q+ L+ +GG +I ++R + A +RI + + +P A+ + +
Sbjct: 140 ELDKGESEGLCRMIVRGNQVDYLMSKGGKMIQKIREDSGAIVRISSTDQIPPCAFPGDVV 199
Query: 399 VQITGSLDVASSALSQVT 416
+Q+ G AL VT
Sbjct: 200 IQMNGKFSSVKKALLLVT 217
Score = 95 (38.5 bits), Expect = 9.2e-21, Sum P(2) = 9.2e-21
Identities = 17/40 (42%), Positives = 30/40 (75%)
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLP 183
R+L PA + G +IGKGG VI+++++ T ++IR++ D +P
Sbjct: 22 RLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVP 61
Score = 65 (27.9 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 17/58 (29%), Positives = 26/58 (44%)
Query: 41 SEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVP-GCDERIVTIYSSS 97
+E +R LCP L+S T S IR+ + +P +ER+V I + S
Sbjct: 16 AESVHFRLLCPATRTGAIIGKGGSVIRHLQSVTGSKIRVIDDIPVPSEERVVLIIAPS 73
Score = 55 (24.4 bits), Expect = 4.7e-13, Sum P(2) = 4.7e-13
Identities = 20/75 (26%), Positives = 41/75 (54%)
Query: 342 SGDPVITT---RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM 398
S +PV+T+ I++P A +G + G + ++ ++ + A++ + + PK A E +
Sbjct: 541 SENPVMTSANVEIVIPQAYLGHVYGENCSNLNYIKQVSGANVVV----HDPK-AGTTEGL 595
Query: 399 VQITGSLDVASSALS 413
V ++G+ D A A S
Sbjct: 596 VVVSGTSDQAHFAQS 610
>TAIR|locus:2084908 [details] [associations]
symbol:FLK "AT3G04610" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=ISM] [GO:0005634 "nucleus" evidence=IDA] [GO:0009911
"positive regulation of flower development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 EMBL:CP002686 GO:GO:0003723
GO:GO:0009911 EMBL:AC011437 KO:K13162 HSSP:Q9UNW9 EMBL:AY070475
IPI:IPI00521688 RefSeq:NP_187112.1 UniGene:At.28392
ProteinModelPortal:Q9SR13 SMR:Q9SR13 STRING:Q9SR13 PRIDE:Q9SR13
ProMEX:Q9SR13 EnsemblPlants:AT3G04610.1 GeneID:819619
KEGG:ath:AT3G04610 TAIR:At3g04610 InParanoid:Q9SR13 OMA:LEPQQYE
PhylomeDB:Q9SR13 ProtClustDB:CLSN2914698 Genevestigator:Q9SR13
Uniprot:Q9SR13
Length = 577
Score = 228 (85.3 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 69/199 (34%), Positives = 100/199 (50%)
Query: 20 ATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRI 79
AT GG ++R PG E TV+R L P + ++ ET++ I+I
Sbjct: 171 ATVGGEEKRWPGWPGE--------TVFRMLVPAQKVGSIIGRKGDVIKKIVEETRARIKI 222
Query: 80 SETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGEL- 138
+ PG ER V + E E S + P+ D L RVH RIV D L D E +
Sbjct: 223 LDGPPGTTERAVMVSGKEEP----ESS---LPPSMDGLLRVHMRIV--DGL-DGEASQAP 272
Query: 139 --TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVA 196
+ ++ R+LVPA Q G +IGK G ++ I+ + +R+L E LP+ AL D +++V
Sbjct: 273 PPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVV 332
Query: 197 GEPAVVRKALVQIASRLHE 215
GEP V +AL IAS L +
Sbjct: 333 GEPTSVHRALELIASHLRK 351
Score = 148 (57.2 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 41/144 (28%), Positives = 75/144 (52%)
Query: 289 QESGASIKVDSSGAEGD-DCIIFISTKEFFEDP-SPTITAALRLQPRCSEKTERESGD-- 344
+E+ A IK+ G G + + +S KE E P++ LR+ R + + E+
Sbjct: 214 EETRARIKI-LDGPPGTTERAVMVSGKEEPESSLPPSMDGLLRVHMRIVDGLDGEASQAP 272
Query: 345 PV--ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
P ++TR+LVP++Q G LIG+ G + ++ A+ +R+L +E++P A +D+ +V++
Sbjct: 273 PPSKVSTRLLVPASQAGSLIGKQGGTVKAIQEASACIVRVLGSEDLPVFALQDDRVVEVV 332
Query: 403 GSLDVASSALSQVTLRLRANTFER 426
G AL + LR +R
Sbjct: 333 GEPTSVHRALELIASHLRKFLVDR 356
Score = 66 (28.3 bits), Expect = 1.9e-18, Sum P(2) = 1.9e-18
Identities = 34/130 (26%), Positives = 54/130 (41%)
Query: 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
+T ++ +P + +IG G+ IS R + A++ I VP E V+++G+
Sbjct: 458 VTQQMQIPLSYADAVIGTSGSNISYTRRLSGATVTIQETRGVP-----GEMTVEVSGT-- 510
Query: 407 VASSALSQVTLRLRANTFEREGALAAHPP--VLP----YVPMSLDITDGSKYGNRD-NQS 459
+ Q ++L N GA A P V P Y P + T GS Y N
Sbjct: 511 ---GSQVQTAVQLIQNFMAEAGAPAPAQPQTVAPEQQGYNPYA---THGSVYAAAPTNPP 564
Query: 460 RGRGNSYATG 469
G Y++G
Sbjct: 565 GGYATDYSSG 574
>TAIR|locus:2066020 [details] [associations]
symbol:AT2G22600 "AT2G22600" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 EMBL:CP002685 GO:GO:0003723 KO:K13162
IPI:IPI00526685 RefSeq:NP_850026.1 UniGene:At.52868
ProteinModelPortal:F4IJK5 SMR:F4IJK5 PRIDE:F4IJK5
EnsemblPlants:AT2G22600.1 GeneID:816791 KEGG:ath:AT2G22600
OMA:RVVCHAS Uniprot:F4IJK5
Length = 632
Score = 165 (63.1 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 59/196 (30%), Positives = 89/196 (45%)
Query: 42 EDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVPGCDERIVTIYSSS---E 98
++T R +C +LR ET + I V G D +V I S+ +
Sbjct: 23 DETAIRVVCHASVIGGIIGSNGYVVSKLRRETGTKIHCESPVNGSDHWVVFIVGSTAVNQ 82
Query: 99 GTNLFEDSGEF------------VSPAQDALFRVHDR----IVAEDS--LADDEFGELTL 140
L + GEF VS AQ AL RV +R + A+D + D E E
Sbjct: 83 SILLTDRVGEFSGGEHEDWVTCEVSAAQTALIRVLERSWVVLAAKDGGGVVDGEDEEAYC 142
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
+L +QIG V+G GG+ ++ +R + A IR+L P+C DEL+Q+ G+
Sbjct: 143 ---GILADRNQIGAVLGLGGKNVEWMRRNSGAMIRVLPP---PICGTKNDELIQITGDVL 196
Query: 201 VVRKALVQIASRLHEN 216
V+KALV ++S + N
Sbjct: 197 AVKKALVMVSSYIQNN 212
Score = 99 (39.9 bits), Expect = 1.5e-14, Sum P(2) = 1.5e-14
Identities = 39/147 (26%), Positives = 64/147 (43%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DP- 345
+ E+GASI V + + ++ +S +E E AL L S + + E G P
Sbjct: 303 QNETGASISVGAPLKVSGERVVTVSARENLESRYSHAQNALALVFARSVEIDVEKGLRPG 362
Query: 346 -----VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ T++LVPS G G E AT A + I V + E+E +++
Sbjct: 363 LHNGAIVKTKLLVPSHFANSFNGNGNR---EAIIATGADVHISVGNQVLEWISENEVVIE 419
Query: 401 ITGSLDVASSALSQVTLRLRANTFERE 427
I G AL+ V+ +LR N ++
Sbjct: 420 IKGEYSHVQKALTHVSSKLRENLLPKK 446
Score = 55 (24.4 bits), Expect = 5.2e-10, Sum P(2) = 5.2e-10
Identities = 12/36 (33%), Positives = 21/36 (58%)
Query: 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRI 382
+ +I+ S G +IG+ G II +++ T ASI +
Sbjct: 277 VVFKIIFTSVVAGGIIGKQGTIIRALQNETGASISV 312
>RGD|1307430 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA;ISO] [GO:0005739 "mitochondrion"
evidence=IEA;ISO] [GO:0005829 "cytosol" evidence=IEA;ISO]
[GO:0043231 "intracellular membrane-bounded organelle"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307430 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 UniGene:Rn.107537
EMBL:BC079196 IPI:IPI00464574 RefSeq:NP_001011945.1 SMR:Q6AY48
IntAct:Q6AY48 MINT:MINT-7138861 Ensembl:ENSRNOT00000001675
GeneID:294336 KEGG:rno:294336 NextBio:638024 Genevestigator:Q6AY48
Uniprot:Q6AY48
Length = 319
Score = 144 (55.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 38 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 141 STERAVTISGTPDAIIQCVKQICVVMLESP 170
Score = 114 (45.2 bits), Expect = 0.00089, P = 0.00089
Identities = 35/128 (27%), Positives = 57/128 (44%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + I T F+ I S + P +
Sbjct: 40 REESGARINISEGNCPERIVTITGPTDAIFK-AFAMIAYKFEEDIINSMSNSPATSKPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP++Q G LIG+GG+ I E+R +T A +++ + +P E V I+G+ D
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPN---STERAVTISGTPDA 154
Query: 408 ASSALSQV 415
+ Q+
Sbjct: 155 IIQCVKQI 162
Score = 91 (37.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 60 TITGPTDAIFKAFAMIAYKFEED 82
Score = 90 (36.7 bits), Expect = 2.3e-12, Sum P(2) = 2.3e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 236 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 290
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 291 ITGT--PANISLAQYLINAR 308
Score = 39 (18.8 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
Score = 38 (18.4 bits), Expect = 5.2e-07, Sum P(2) = 5.2e-07
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 268 RQMSGAQIKI-ANATEG 283
>UNIPROTKB|F1NPL4 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00571530 Ensembl:ENSGALT00000021482 ArrayExpress:F1NPL4
Uniprot:F1NPL4
Length = 326
Score = 137 (53.3 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 47/150 (31%), Positives = 77/150 (51%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ F + + AL + + I A
Sbjct: 38 KMREESGARINISEG--SCPERIVTITGPTDAI--------FKAFSMIAL-KFEEDINA- 85
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 86 -SMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 141 STERAVTISGTPDAIIQCVKQICVVMLESP 170
Score = 122 (48.0 bits), Expect = 0.00012, P = 0.00012
Identities = 36/128 (28%), Positives = 58/128 (45%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + I T F+ S I S + P +
Sbjct: 40 REESGARINISEGSCPERIVTITGPTDAIFKAFS-MIALKFEEDINASMTNSTVTSKPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP++Q G LIG+GG+ I E+R +T A +++ + +P E V I+G+ D
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPN---STERAVTISGTPDA 154
Query: 408 ASSALSQV 415
+ Q+
Sbjct: 155 IIQCVKQI 162
Score = 98 (39.6 bits), Expect = 2.5e-12, Sum P(2) = 2.5e-12
Identities = 28/82 (34%), Positives = 47/82 (57%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P + + +P+ IGC+IGR G+ I+E+R + A I+I N + + E + V
Sbjct: 239 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIA---NATEGSAERQ--VT 293
Query: 401 ITGSLDVASSALSQVTLRLRAN 422
ITGS A+ +L+Q + RAN
Sbjct: 294 ITGS--PANISLAQYLINARAN 313
Score = 88 (36.0 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + C + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGS----CP---ERIV 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 60 TITGPTDAIFKAFSMIALKFEED 82
Score = 39 (18.8 bits), Expect = 4.2e-07, Sum P(3) = 4.2e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
Score = 38 (18.4 bits), Expect = 3.8e-06, Sum P(2) = 3.8e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 271 RQMSGAQIKI-ANATEG 286
>UNIPROTKB|F1NPL2 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00812713 Ensembl:ENSGALT00000021485 ArrayExpress:F1NPL2
Uniprot:F1NPL2
Length = 319
Score = 137 (53.3 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 47/150 (31%), Positives = 77/150 (51%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ F + + AL + + I A
Sbjct: 38 KMREESGARINISEG--SCPERIVTITGPTDAI--------FKAFSMIAL-KFEEDINA- 85
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 86 -SMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 141 STERAVTISGTPDAIIQCVKQICVVMLESP 170
Score = 122 (48.0 bits), Expect = 0.00011, P = 0.00011
Identities = 36/128 (28%), Positives = 58/128 (45%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + I T F+ S I S + P +
Sbjct: 40 REESGARINISEGSCPERIVTITGPTDAIFKAFS-MIALKFEEDINASMTNSTVTSKPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP++Q G LIG+GG+ I E+R +T A +++ + +P E V I+G+ D
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPN---STERAVTISGTPDA 154
Query: 408 ASSALSQV 415
+ Q+
Sbjct: 155 IIQCVKQI 162
Score = 96 (38.9 bits), Expect = 3.6e-12, Sum P(2) = 3.6e-12
Identities = 32/100 (32%), Positives = 52/100 (52%)
Query: 322 PTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIR 381
P T + P E+ + S P + + +P+ IGC+IGR G+ I+E+R + A I+
Sbjct: 219 PPFTPLGQTTPGFPERLDATS--PTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIK 276
Query: 382 ILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421
I N + + E + V ITGS A+ +L+Q + RA
Sbjct: 277 IA---NATEGSAERQ--VTITGS--PANISLAQYLINARA 309
Score = 88 (36.0 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + C + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGS----CP---ERIV 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 60 TITGPTDAIFKAFSMIALKFEED 82
Score = 39 (18.8 bits), Expect = 6.3e-07, Sum P(3) = 6.3e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
Score = 38 (18.4 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 268 RQMSGAQIKI-ANATEG 283
>UNIPROTKB|Q17QV0 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005829 "cytosol" evidence=IEA] [GO:0005739
"mitochondrion" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F EMBL:DAAA02003497 EMBL:DAAA02003498
EMBL:DAAA02003499 EMBL:DAAA02003500 EMBL:DAAA02003501 EMBL:BC118166
IPI:IPI00733966 RefSeq:NP_001069752.1 UniGene:Bt.27304 SMR:Q17QV0
Ensembl:ENSBTAT00000043482 GeneID:613725 KEGG:bta:613725
InParanoid:Q17QV0 NextBio:20898729 Uniprot:Q17QV0
Length = 361
Score = 144 (55.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 38 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 141 STERAVTISGTPDAIIQCVKQICVVMLESP 170
Score = 91 (37.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 60 TITGPTDAIFKAFAMIAYKFEED 82
Score = 90 (36.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 278 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 332
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 333 ITGT--PANISLAQYLINAR 350
Score = 39 (18.8 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
Score = 38 (18.4 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 310 RQMSGAQIKI-ANATEG 325
>UNIPROTKB|E9PFP8 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0043231
"intracellular membrane-bounded organelle" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 HGNC:HGNC:8651 ChiTaRS:PCBP3 IPI:IPI00550365
ProteinModelPortal:E9PFP8 SMR:E9PFP8 PRIDE:E9PFP8
Ensembl:ENST00000400304 UCSC:uc002zht.2 ArrayExpress:E9PFP8
Bgee:E9PFP8 Uniprot:E9PFP8
Length = 361
Score = 144 (55.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 38 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 141 STERAVTISGTPDAIIQCVKQICVVMLESP 170
Score = 91 (37.1 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 60 TITGPTDAIFKAFAMIAYKFEED 82
Score = 90 (36.7 bits), Expect = 4.0e-12, Sum P(2) = 4.0e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 278 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 332
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 333 ITGT--PANISLAQYLINAR 350
Score = 39 (18.8 bits), Expect = 2.6e-06, Sum P(3) = 2.6e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
Score = 38 (18.4 bits), Expect = 9.2e-07, Sum P(2) = 9.2e-07
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 310 RQMSGAQIKI-ANATEG 325
>UNIPROTKB|E2RCH9 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03016660 Ensembl:ENSCAFT00000010991 Uniprot:E2RCH9
Length = 370
Score = 144 (55.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 70 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 116
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 117 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 172
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 173 STERAVTISGTPDAIIQCVKQICVVMLESP 202
Score = 91 (37.1 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 91
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 92 TITGPTDAIFKAFAMIAYKFEED 114
Score = 90 (36.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 287 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 341
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 342 ITGT--PANISLAQYLINAR 359
Score = 39 (18.8 bits), Expect = 2.8e-06, Sum P(3) = 2.8e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 319 RQMSGAQIKI-ANATEG 334
>UNIPROTKB|E2QUE1 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:FWAPSVL EMBL:AAEX03016660 Ensembl:ENSCAFT00000018912
Uniprot:E2QUE1
Length = 371
Score = 144 (55.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 70 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 116
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 117 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 172
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 173 STERAVTISGTPDAIIQCVKQICVVMLESP 202
Score = 91 (37.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 91
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 92 TITGPTDAIFKAFAMIAYKFEED 114
Score = 90 (36.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 288 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 342
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 343 ITGT--PANISLAQYLINAR 360
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 320 RQMSGAQIKI-ANATEG 335
>UNIPROTKB|P57721 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=NAS] [GO:0016071 "mRNA metabolic process" evidence=NAS]
[GO:0005829 "cytosol" evidence=IDA] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA] [GO:0005739
"mitochondrion" evidence=IDA] [GO:0043231 "intracellular
membrane-bounded organelle" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0016071
GO:GO:0003677 GO:GO:0003723 GO:GO:0030529 eggNOG:NOG315872
HOVERGEN:HBG053520 KO:K13162 EMBL:AF176329 EMBL:AK094301
EMBL:AJ011931 EMBL:AJ239328 EMBL:AL133492 EMBL:AL133493
EMBL:AL592528 EMBL:BC012061 IPI:IPI00027970 IPI:IPI00101278
IPI:IPI00167750 IPI:IPI00410586 IPI:IPI00410587
RefSeq:NP_001123613.1 RefSeq:NP_065389.2 UniGene:Hs.474049
ProteinModelPortal:P57721 SMR:P57721 IntAct:P57721
MINT:MINT-2862183 STRING:P57721 PhosphoSite:P57721 DMDM:296439262
PaxDb:P57721 PRIDE:P57721 Ensembl:ENST00000400308
Ensembl:ENST00000400309 Ensembl:ENST00000400310
Ensembl:ENST00000400314 Ensembl:ENST00000449640 GeneID:54039
KEGG:hsa:54039 UCSC:uc002zhp.2 UCSC:uc002zhq.2 UCSC:uc002zhs.2
CTD:54039 GeneCards:GC21P047063 HGNC:HGNC:8651 HPA:HPA030247
MIM:608502 neXtProt:NX_P57721 PharmGKB:PA32990 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 GenomeRNAi:54039 NextBio:56330
ArrayExpress:P57721 Bgee:P57721 CleanEx:HS_PCBP3
Genevestigator:P57721 GermOnline:ENSG00000183570 Uniprot:P57721
Length = 371
Score = 144 (55.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 70 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 116
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 117 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 172
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 173 STERAVTISGTPDAIIQCVKQICVVMLESP 202
Score = 91 (37.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 91
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 92 TITGPTDAIFKAFAMIAYKFEED 114
Score = 90 (36.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 288 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 342
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 343 ITGT--PANISLAQYLINAR 360
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 320 RQMSGAQIKI-ANATEG 335
>MGI|MGI:1890470 [details] [associations]
symbol:Pcbp3 "poly(rC) binding protein 3" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005737 "cytoplasm" evidence=IEA] [GO:0005829 "cytosol"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890470 GO:GO:0005829 GO:GO:0005739
GO:GO:0005634 GO:GO:0003677 GO:GO:0003723 GO:GO:0030529
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:54039 OMA:FWAPSVL
OrthoDB:EOG4XH00F ChiTaRS:PCBP3 EMBL:AF176327 EMBL:AK034811
EMBL:AK079564 IPI:IPI00411074 IPI:IPI00411075 RefSeq:NP_067543.2
UniGene:Mm.272803 ProteinModelPortal:P57722 SMR:P57722
STRING:P57722 PhosphoSite:P57722 PaxDb:P57722 PRIDE:P57722
Ensembl:ENSMUST00000001148 Ensembl:ENSMUST00000105411
Ensembl:ENSMUST00000168465 GeneID:59093 KEGG:mmu:59093
UCSC:uc007fuz.2 UCSC:uc007fva.2 InParanoid:P57722 NextBio:314746
Bgee:P57722 CleanEx:MM_PCBP3 Genevestigator:P57722
GermOnline:ENSMUSG00000001120 Uniprot:P57722
Length = 371
Score = 144 (55.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 70 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 116
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 117 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 172
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 173 STERAVTISGTPDAIIQCVKQICVVMLESP 202
Score = 91 (37.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 91
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 92 TITGPTDAIFKAFAMIAYKFEED 114
Score = 90 (36.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 288 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 342
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 343 ITGT--PANISLAQYLINAR 360
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 320 RQMSGAQIKI-ANATEG 335
>UNIPROTKB|D4A1P3 [details] [associations]
symbol:Pcbp3 "Protein Pcbp3" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1307430 GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
EMBL:CH473988 OrthoDB:EOG4XH00F IPI:IPI00558998 UniGene:Rn.107537
Ensembl:ENSRNOT00000042120 Uniprot:D4A1P3
Length = 371
Score = 144 (55.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 46/150 (30%), Positives = 80/150 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 70 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 116
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 117 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 172
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 173 STERAVTISGTPDAIIQCVKQICVVMLESP 202
Score = 91 (37.1 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 39 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 91
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 92 TITGPTDAIFKAFAMIAYKFEED 114
Score = 90 (36.7 bits), Expect = 4.5e-12, Sum P(2) = 4.5e-12
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 288 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 342
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 343 ITGT--PANISLAQYLINAR 360
Score = 39 (18.8 bits), Expect = 2.9e-06, Sum P(3) = 2.9e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 131 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 165
Score = 38 (18.4 bits), Expect = 1.0e-06, Sum P(2) = 1.0e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 320 RQMSGAQIKI-ANATEG 335
>ZFIN|ZDB-GENE-050522-157 [details] [associations]
symbol:pcbp3 "poly(rC) binding protein 3"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-050522-157 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:BX247868 HOVERGEN:HBG053520 IPI:IPI00868273 UniGene:Dr.159961
SMR:A8WHQ1 Ensembl:ENSDART00000148317 Uniprot:A8WHQ1
Length = 350
Score = 143 (55.4 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 52/187 (27%), Positives = 89/187 (47%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 40 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 86
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ +R T AQ+++ D LP
Sbjct: 87 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDM-LPN--- 142
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXXXX---XXXNIYQSSGVYLSAPLV 244
S + + ++G P + + + QI + E+P + S G + PL
Sbjct: 143 STERAVTISGTPEAIIQCVKQICVVMLESPPKGATIPYRPKPASTPVIFSGGQVRADPLA 202
Query: 245 GSYGNYS 251
S N S
Sbjct: 203 ASAANLS 209
Score = 97 (39.2 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 24/90 (26%), Positives = 46/90 (51%)
Query: 127 EDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCA 186
E S E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P
Sbjct: 2 EPSKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP--- 57
Query: 187 LSFDELLQVAGEPAVVRKALVQIASRLHEN 216
+ ++ + G + KA IA + E+
Sbjct: 58 ---ERIVTITGPTDAIFKAFAMIAYKFEED 84
Score = 89 (36.4 bits), Expect = 5.9e-12, Sum P(2) = 5.9e-12
Identities = 24/80 (30%), Positives = 41/80 (51%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I + E +
Sbjct: 261 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN-----AMEGSSERQIT 315
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 316 ITGT--PANISLAQYLINAR 333
Score = 39 (18.8 bits), Expect = 6.0e-07, Sum P(3) = 6.0e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 101 TLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV 135
Score = 37 (18.1 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 293 RQMSGAQIKI-ANAMEG 308
>UNIPROTKB|G3V0E8 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2, isoform CRA_f"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CH471054 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 RefSeq:NP_001122386.1 UniGene:Hs.546271 GeneID:5094
KEGG:hsa:5094 CTD:5094 HGNC:HGNC:8648 KO:K13162 ChiTaRS:PCBP2
GenomeRNAi:5094 NextBio:19648 ProteinModelPortal:G3V0E8 SMR:G3V0E8
PRIDE:G3V0E8 Ensembl:ENST00000437231 Ensembl:ENST00000455667
ArrayExpress:G3V0E8 Bgee:G3V0E8 Uniprot:G3V0E8
Length = 318
Score = 134 (52.2 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 42/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + E+P
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP 170
Score = 95 (38.5 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 297
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 298 SLAQYLINVRLSS 310
Score = 93 (37.8 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 46 (21.3 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 246 SYGN--YSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAE 303
++GN +SA D ASA+ S L P RQ SGA IK+ ++ E
Sbjct: 224 THGNTGFSAGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVE 281
Query: 304 G 304
G
Sbjct: 282 G 282
Score = 40 (19.1 bits), Expect = 2.1e-07, Sum P(3) = 2.1e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>ZFIN|ZDB-GENE-030131-563 [details] [associations]
symbol:pcbp2 "poly(rC) binding protein 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-030131-563 GO:GO:0003723 GeneTree:ENSGT00550000074311
HOGENOM:HOG000182823 HOVERGEN:HBG053520 CTD:5094 KO:K13162
OMA:CVVMLEL HSSP:Q9UNW9 EMBL:CR848672 EMBL:BC045508 EMBL:BC066603
EMBL:AY398394 IPI:IPI00495300 RefSeq:NP_957486.1 UniGene:Dr.76907
SMR:Q7ZVK5 Ensembl:ENSDART00000025885 GeneID:321844 KEGG:dre:321844
InParanoid:Q7ZVK5 NextBio:20807553 Uniprot:Q7ZVK5
Length = 318
Score = 137 (53.3 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 43/150 (28%), Positives = 76/150 (50%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + T +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPT--TAIFKAFSMIIEKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMSNSTATSKPPVTLRIVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + E+P
Sbjct: 141 STERAITIAGTPLSIIECVKQICVVMLESP 170
Score = 93 (37.8 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTTAIFKAFSMIIEKLEED 82
Score = 91 (37.1 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 29/81 (35%), Positives = 44/81 (54%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 245 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSSDRQ-VTITGS--PASI 297
Query: 411 ALSQVTLRLRANTFEREGALA 431
+L++ + R ++ E G A
Sbjct: 298 SLAEYLINARLSS-EATGMAA 317
Score = 48 (22.0 bits), Expect = 3.2e-07, Sum P(2) = 3.2e-07
Identities = 20/63 (31%), Positives = 26/63 (41%)
Query: 242 PLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSG 301
PL S ++A D ASA+ S L P RQ SGA IK+ ++
Sbjct: 222 PLAPSSQGFTAGMD-ASAQTGSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANP 279
Query: 302 AEG 304
EG
Sbjct: 280 VEG 282
>UNIPROTKB|E2RCF9 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:AAEX03014980 RefSeq:XP_857995.1
ProteinModelPortal:E2RCF9 Ensembl:ENSCAFT00000010996 GeneID:477596
KEGG:cfa:477596 Uniprot:E2RCF9
Length = 331
Score = 134 (52.2 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 42/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + E+P
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP 170
Score = 95 (38.5 bits), Expect = 1.2e-11, Sum P(2) = 1.2e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 258 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 310
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 311 SLAQYLINVRLSS 323
Score = 93 (37.8 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 47 (21.6 bits), Expect = 1.1e-06, Sum P(2) = 1.1e-06
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y A D ASA+ S L P RQ SGA
Sbjct: 231 SGIESSSPEVKGYW---AGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 286
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 287 IKI-ANPVEG 295
Score = 40 (19.1 bits), Expect = 2.5e-07, Sum P(3) = 2.5e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q3SYT9 [details] [associations]
symbol:PCBP2 "Poly(RC) binding protein 2" species:9913 "Bos
taurus" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094
KO:K13162 OMA:CVVMLEL EMBL:DAAA02012861 EMBL:DAAA02012860
EMBL:BC103397 IPI:IPI00696193 RefSeq:NP_001029883.1
UniGene:Bt.49118 SMR:Q3SYT9 STRING:Q3SYT9
Ensembl:ENSBTAT00000027662 GeneID:540653 KEGG:bta:540653
InParanoid:Q3SYT9 NextBio:20878753 Uniprot:Q3SYT9
Length = 349
Score = 134 (52.2 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 42/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + E+P
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP 170
Score = 95 (38.5 bits), Expect = 1.5e-11, Sum P(2) = 1.5e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 276 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 328
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 329 SLAQYLINVRLSS 341
Score = 93 (37.8 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 46 (21.3 bits), Expect = 1.7e-06, Sum P(2) = 1.7e-06
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 246 SYGN--YSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAE 303
++GN +SA D ASA+ S L P RQ SGA IK+ ++ E
Sbjct: 255 THGNTGFSAGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVE 312
Query: 304 G 304
G
Sbjct: 313 G 313
Score = 40 (19.1 bits), Expect = 3.2e-07, Sum P(3) = 3.2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|J3QT27 [details] [associations]
symbol:PCBP3 "Poly(rC)-binding protein 3" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AJ011931 EMBL:AJ239328
EMBL:AL133492 EMBL:AL133493 EMBL:AL592528 HGNC:HGNC:8651
ChiTaRS:PCBP3 ProteinModelPortal:J3QT27 Ensembl:ENST00000400305
Uniprot:J3QT27
Length = 322
Score = 137 (53.3 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 44/142 (30%), Positives = 76/142 (53%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 46 KMREESGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 92
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 93 NSMSNSPATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 148
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + ++G P + + + QI
Sbjct: 149 STERAVTISGTPDAIIQCVKQI 170
Score = 127 (49.8 bits), Expect = 3.2e-05, P = 3.2e-05
Identities = 42/151 (27%), Positives = 68/151 (45%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + I T F+ I S + P +
Sbjct: 48 REESGARINISEGNCPERIVTITGPTDAIFK-AFAMIAYKFEEDIINSMSNSPATSKPPV 106
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP++Q G LIG+GG+ I E+R +T A +++ + +P E V I+G+ D
Sbjct: 107 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPN---STERAVTISGTPDA 162
Query: 408 ASSALSQV-TLRLRANTFEREGALAAHPPVL 437
+ Q+ + L A T + + A+ HP L
Sbjct: 163 IIQCVKQICVVMLEAYTIQGQYAIP-HPDQL 192
Score = 91 (37.1 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 22/83 (26%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 15 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINI-SEGNCP------ERIV 67
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 68 TITGPTDAIFKAFAMIAYKFEED 90
Score = 90 (36.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 239 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 293
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 294 ITGT--PANISLAQYLINAR 311
Score = 39 (18.8 bits), Expect = 1.5e-06, Sum P(3) = 1.5e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 107 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 141
Score = 38 (18.4 bits), Expect = 3.6e-06, Sum P(2) = 3.6e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 271 RQMSGAQIKI-ANATEG 286
>MGI|MGI:108202 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=ISO] [GO:0019899 "enzyme binding"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0031625 "ubiquitin protein ligase binding" evidence=ISO]
[GO:0043161 "proteasomal ubiquitin-dependent protein catabolic
process" evidence=ISO] [GO:0045087 "innate immune response"
evidence=IEA] [GO:0050687 "negative regulation of defense response
to virus" evidence=ISO] [GO:0051607 "defense response to virus"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:108202 GO:GO:0005634
GO:GO:0005737 GO:GO:0043161 GO:GO:0003677 GO:GO:0045087
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 GO:GO:0050687
GeneTree:ENSGT00550000074311 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K CTD:5094 KO:K13162 OMA:CVVMLEL
ChiTaRS:PCBP2 EMBL:L19661 EMBL:X75947 EMBL:X97982 EMBL:AF236845
EMBL:AF236842 EMBL:AF236843 EMBL:AF236844 IPI:IPI00127707
IPI:IPI00221796 IPI:IPI00221799 PIR:S78515 RefSeq:NP_001096635.1
RefSeq:NP_001096636.1 RefSeq:NP_035172.2 UniGene:Mm.236513
ProteinModelPortal:Q61990 SMR:Q61990 IntAct:Q61990 STRING:Q61990
PhosphoSite:Q61990 REPRODUCTION-2DPAGE:Q61990 PaxDb:Q61990
PRIDE:Q61990 Ensembl:ENSMUST00000077037 Ensembl:ENSMUST00000078404
Ensembl:ENSMUST00000108838 GeneID:18521 KEGG:mmu:18521
UCSC:uc007xvy.2 UCSC:uc007xvz.2 UCSC:uc009vat.1 InParanoid:Q61990
NextBio:294276 Bgee:Q61990 CleanEx:MM_PCBP2 Genevestigator:Q61990
GermOnline:ENSMUSG00000056851 Uniprot:Q61990
Length = 362
Score = 134 (52.2 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 42/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + E+P
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP 170
Score = 95 (38.5 bits), Expect = 1.7e-11, Sum P(2) = 1.7e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 289 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 341
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 342 SLAQYLINVRLSS 354
Score = 93 (37.8 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 47 (21.6 bits), Expect = 1.5e-06, Sum P(2) = 1.5e-06
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y A D ASA+ S L P RQ SGA
Sbjct: 262 SGIESSSPEVKGYW---AGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 317
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 318 IKI-ANPVEG 326
Score = 40 (19.1 bits), Expect = 3.7e-07, Sum P(3) = 3.7e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|J9P8W8 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AAEX03014817 Ensembl:ENSCAFT00000021540 OMA:QTSSHEM
Uniprot:J9P8W8
Length = 315
Score = 131 (51.2 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 42/150 (28%), Positives = 73/150 (48%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ V
Sbjct: 38 KMREESGAGINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEE---------VIS 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + + P
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLDPP 170
Score = 95 (38.5 bits), Expect = 2.2e-11, Sum P(2) = 2.2e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 242 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 294
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 295 SLAQYLINVRLSS 307
Score = 89 (36.4 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGAGINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHE 215
+AG + KA I +L E
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEE 81
Score = 43 (20.2 bits), Expect = 4.9e-06, Sum P(2) = 4.9e-06
Identities = 19/61 (31%), Positives = 26/61 (42%)
Query: 246 SYGN--YSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAE 303
++GN +S D ASA+ S L P RQ SGA IK+ ++ E
Sbjct: 221 THGNTGFSGSLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVE 278
Query: 304 G 304
G
Sbjct: 279 G 279
Score = 40 (19.1 bits), Expect = 4.9e-07, Sum P(3) = 4.9e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>ZFIN|ZDB-GENE-070424-78 [details] [associations]
symbol:zgc:162999 "zgc:162999" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
Pfam:PF13014 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-070424-78
GO:GO:0003723 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 EMBL:BC135088 IPI:IPI00845944
RefSeq:NP_001083021.1 UniGene:Dr.122660 ProteinModelPortal:A4IGG5
SMR:A4IGG5 PRIDE:A4IGG5 GeneID:100038772 KEGG:dre:100038772
NextBio:20788560 Bgee:A4IGG5 Uniprot:A4IGG5
Length = 350
Score = 146 (56.5 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 44/150 (29%), Positives = 81/150 (54%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I +SE C ERIVTI ++ +F+ F A ++ + I+
Sbjct: 40 KMREESSARINVSEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDII-- 86
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
+S+++ + +T+R++VPA Q G +IGKGG I+ +R T AQ+++ D LP
Sbjct: 87 NSMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQVAGDM-LPN--- 142
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + QI + E+P
Sbjct: 143 STERAVTISGTPEAIIQCVKQICVVMLESP 172
Score = 113 (44.8 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 25/81 (30%), Positives = 45/81 (55%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYE 394
S + + P +T R++VP++Q G LIG+GG+ I EMR +T A +++ + +P
Sbjct: 88 SMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV-AGDMLPN---S 143
Query: 395 DEEMVQITGSLDVASSALSQV 415
E V I+G+ + + Q+
Sbjct: 144 TERAVTISGTPEAIIQCVKQI 164
Score = 94 (38.1 bits), Expect = 4.7e-09, Sum P(2) = 4.7e-09
Identities = 23/90 (25%), Positives = 46/90 (51%)
Query: 127 EDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCA 186
E S E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I + + + P
Sbjct: 2 ELSKVQSEGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESSARINV-SEGNCP--- 57
Query: 187 LSFDELLQVAGEPAVVRKALVQIASRLHEN 216
+ ++ + G + KA IA + E+
Sbjct: 58 ---ERIVTITGPTDAIFKAFAMIAYKFEED 84
Score = 79 (32.9 bits), Expect = 2.9e-11, Sum P(2) = 2.9e-11
Identities = 22/73 (30%), Positives = 38/73 (52%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR G I+E+R + A I+I + + + ITG+
Sbjct: 268 THELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIAN-----AMEGSSDRQITITGT--P 320
Query: 408 ASSALSQVTLRLR 420
A+ +L+Q + R
Sbjct: 321 ANISLAQYLINAR 333
Score = 40 (19.1 bits), Expect = 1.0e-05, Sum P(3) = 1.0e-05
Identities = 12/48 (25%), Positives = 21/48 (43%)
Query: 251 SARRDEASARE-FSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
S +A+++ +LRLV PA R+ +GA ++V
Sbjct: 88 SMSNSQATSKPPVTLRLVVPASQCGSLIGKGGSKIKEMRESTGAQVQV 135
Score = 37 (18.1 bits), Expect = 6.1e-07, Sum P(2) = 6.1e-07
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 293 RQMSGAQIKI-ANAMEG 308
>UNIPROTKB|E1BVU6 [details] [associations]
symbol:LOC100858906 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005739 "mitochondrion" evidence=IEA]
[GO:0005829 "cytosol" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 GO:GO:0005739 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00550000074311 OMA:FWAPSVL EMBL:AADN02031620
EMBL:AADN02034412 EMBL:AADN02034413 EMBL:AADN02034414
IPI:IPI00682929 Ensembl:ENSGALT00000007004 Uniprot:E1BVU6
Length = 339
Score = 135 (52.6 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 45/148 (30%), Positives = 77/148 (52%)
Query: 70 RSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDS 129
R ++ + I ISE C ERIVTI ++ +F+ F A ++ + I +S
Sbjct: 40 REQSGARINISEG--NCPERIVTITGPTDA--IFK---AFAMIA----YKFEEDIT--NS 86
Query: 130 LADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSF 189
+++ +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP S
Sbjct: 87 MSNSTATSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN---ST 142
Query: 190 DELLQVAGEPAVVRKALVQIASRLHENP 217
+ + ++G P + + + QI + E+P
Sbjct: 143 ERAVTISGTPDAIIQCVKQICVVMLESP 170
Score = 114 (45.2 bits), Expect = 0.00099, P = 0.00099
Identities = 34/128 (26%), Positives = 57/128 (44%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R++SGA I + I T F+ I S + P +
Sbjct: 40 REQSGARINISEGNCPERIVTITGPTDAIFK-AFAMIAYKFEEDITNSMSNSTATSKPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP++Q G LIG+GG+ I E+R +T A +++ + +P E V I+G+ D
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPN---STERAVTISGTPDA 154
Query: 408 ASSALSQV 415
+ Q+
Sbjct: 155 IIQCVKQI 162
Score = 90 (36.7 bits), Expect = 3.4e-11, Sum P(2) = 3.4e-11
Identities = 25/80 (31%), Positives = 43/80 (53%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P T + +P+ IGC+IGR G I+E+R + A I+I N + + E +
Sbjct: 256 DASPPASTHELTIPNDLIGCIIGRQGTKINEIRQMSGAQIKIA---NATEGS--SERQIT 310
Query: 401 ITGSLDVASSALSQVTLRLR 420
ITG+ A+ +L+Q + R
Sbjct: 311 ITGT--PANISLAQYLINAR 328
Score = 69 (29.3 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 21/83 (25%), Positives = 41/83 (49%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G + R ++ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKMGCLHVVTREQSGARINI-SEGNCP------ERIV 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 60 TITGPTDAIFKAFAMIAYKFEED 82
Score = 39 (18.8 bits), Expect = 0.00030, Sum P(3) = 0.00030
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 99 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 133
Score = 38 (18.4 bits), Expect = 7.6e-06, Sum P(2) = 7.6e-06
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 288 RQMSGAQIKI-ANATEG 303
>UNIPROTKB|H3BRU6 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 Ensembl:ENST00000562264 Uniprot:H3BRU6
Length = 301
Score = 127 (49.8 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 19 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 65
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 66 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 121
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 122 STERAITIAGIPQSIIECVKQI 143
Score = 95 (38.5 bits), Expect = 5.1e-11, Sum P(2) = 5.1e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 228 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 280
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 281 SLAQYLINVRLSS 293
Score = 73 (30.8 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 18/66 (27%), Positives = 36/66 (54%)
Query: 151 QIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIA 210
++G +IGK G+ ++ +R E+ A+I I + + P + ++ +AG + KA I
Sbjct: 5 EVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERIITLAGPTNAIFKAFAMII 57
Query: 211 SRLHEN 216
+L E+
Sbjct: 58 DKLEED 63
Score = 47 (21.6 bits), Expect = 4.4e-06, Sum P(2) = 4.4e-06
Identities = 21/70 (30%), Positives = 28/70 (40%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y +ASA+ S L P RQ SGA
Sbjct: 202 SGIESSSPEVKGYWGL-----DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 256
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 257 IKI-ANPVEG 265
Score = 40 (19.1 bits), Expect = 1.5e-05, Sum P(3) = 1.5e-05
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 74 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 114
>UNIPROTKB|F8VZX2 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021216
ProteinModelPortal:F8VZX2 SMR:F8VZX2 Ensembl:ENST00000549863
ArrayExpress:F8VZX2 Bgee:F8VZX2 Uniprot:F8VZX2
Length = 321
Score = 127 (49.8 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 141 STERAITIAGIPQSIIECVKQI 162
Score = 95 (38.5 bits), Expect = 6.7e-11, Sum P(2) = 6.7e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 248 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 300
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 301 SLAQYLINVRLSS 313
Score = 93 (37.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 47 (21.6 bits), Expect = 5.8e-06, Sum P(2) = 5.8e-06
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y A D ASA+ S L P RQ SGA
Sbjct: 221 SGIESSSPEVKGYW---AGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 276
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 277 IKI-ANPVEG 285
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|B4DXP5 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HOGENOM:HOG000182823 HOVERGEN:HBG053520 OrthoDB:EOG46WZ8K
UniGene:Hs.546271 HGNC:HGNC:8648 ChiTaRS:PCBP2 EMBL:AK302067
IPI:IPI00900327 SMR:B4DXP5 STRING:B4DXP5 Ensembl:ENST00000552819
UCSC:uc001sdf.4 Uniprot:B4DXP5
Length = 322
Score = 127 (49.8 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 141 STERAITIAGIPQSIIECVKQI 162
Score = 95 (38.5 bits), Expect = 6.8e-11, Sum P(2) = 6.8e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 249 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 301
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 302 SLAQYLINVRLSS 314
Score = 93 (37.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 46 (21.3 bits), Expect = 7.5e-06, Sum P(2) = 7.5e-06
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 246 SYGN--YSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAE 303
++GN +SA D ASA+ S L P RQ SGA IK+ ++ E
Sbjct: 228 THGNTGFSAGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVE 285
Query: 304 G 304
G
Sbjct: 286 G 286
Score = 40 (19.1 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q5E9A3 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9913 "Bos
taurus" [GO:0003697 "single-stranded DNA binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
EMBL:BT021017 IPI:IPI00687560 RefSeq:NP_001015565.1 UniGene:Bt.4620
ProteinModelPortal:Q5E9A3 SMR:Q5E9A3 MINT:MINT-6732977
STRING:Q5E9A3 PRIDE:Q5E9A3 Ensembl:ENSBTAT00000011824 GeneID:509917
KEGG:bta:509917 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
InParanoid:Q5E9A3 KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K
NextBio:20869194 Uniprot:Q5E9A3
Length = 356
Score = 130 (50.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 RIREESGARINISEG--NCPERIITLTGPTNA--IFKAFAMIIDKLEEDI---------N 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P V + + QI
Sbjct: 141 STERAITIAGVPQSVTECVKQI 162
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 48/187 (25%), Positives = 77/187 (41%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 40 REESGARINISEGNCPERIITLTGPTNAIFK-AFAMIIDKLEEDINSSMTNSTAASRPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP+ Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGVPQS 154
Query: 408 ASSALSQVTL-RLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSY 466
+ + Q+ L L + +G + +PY PM + G +D S G +
Sbjct: 155 VTECVKQICLVMLETLSQSPQGRVMT----IPYQPMPAS-SPVICAGGQDRCSDAAGYPH 209
Query: 467 ATGNLPG 473
AT +L G
Sbjct: 210 ATHDLEG 216
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR GA I+E+R + A I+I P V V ITGS
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----P-VEGSSGRQVTITGS--A 333
Query: 408 ASSALSQVTLRLRANT 423
AS +L+Q + R ++
Sbjct: 334 ASISLAQYLINARLSS 349
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ IR E+ A+I I + + P + ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA I +L E+
Sbjct: 60 TLTGPTNAIFKAFAMIIDKLEED 82
Score = 42 (19.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 249 NYSARRDEASARE-FSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
N S A++R +LRLV PA R+ +GA ++V
Sbjct: 84 NSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q15365 [details] [associations]
symbol:PCBP1 "Poly(rC)-binding protein 1" species:9606
"Homo sapiens" [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0003723 "RNA binding" evidence=IDA] [GO:0005634
"nucleus" evidence=NAS] [GO:0005737 "cytoplasm" evidence=NAS]
[GO:0016071 "mRNA metabolic process" evidence=NAS] [GO:0000398
"mRNA splicing, via spliceosome" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0005515 "protein binding" evidence=IPI] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0005654 Reactome:REACT_1675
GO:GO:0003723 GO:GO:0003697 GO:GO:0030529 GO:GO:0000398
eggNOG:NOG315872 CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520
KO:K12889 OMA:RNISERN OrthoDB:EOG46WZ8K EMBL:X78137 EMBL:U24223
EMBL:Z29505 EMBL:BC039742 IPI:IPI00016610 RefSeq:NP_006187.2
UniGene:Hs.2853 PDB:1WVN PDB:1ZTG PDB:3VKE PDBsum:1WVN PDBsum:1ZTG
PDBsum:3VKE ProteinModelPortal:Q15365 SMR:Q15365 DIP:DIP-38136N
IntAct:Q15365 MINT:MINT-96267 STRING:Q15365 PhosphoSite:Q15365
DMDM:42560548 OGP:Q15365 REPRODUCTION-2DPAGE:IPI00016610
UCD-2DPAGE:Q15365 PaxDb:Q15365 PeptideAtlas:Q15365 PRIDE:Q15365
DNASU:5093 Ensembl:ENST00000303577 GeneID:5093 KEGG:hsa:5093
UCSC:uc002sgf.3 GeneCards:GC02P070314 HGNC:HGNC:8647 HPA:CAB037113
MIM:601209 neXtProt:NX_Q15365 PharmGKB:PA32986 InParanoid:Q15365
PhylomeDB:Q15365 ChiTaRS:PCBP1 EvolutionaryTrace:Q15365
GenomeRNAi:5093 NextBio:19644 ArrayExpress:Q15365 Bgee:Q15365
CleanEx:HS_PCBP1 Genevestigator:Q15365 GermOnline:ENSG00000169564
Uniprot:Q15365
Length = 356
Score = 130 (50.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 RIREESGARINISEG--NCPERIITLTGPTNA--IFKAFAMIIDKLEEDI---------N 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P V + + QI
Sbjct: 141 STERAITIAGVPQSVTECVKQI 162
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 48/187 (25%), Positives = 77/187 (41%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 40 REESGARINISEGNCPERIITLTGPTNAIFK-AFAMIIDKLEEDINSSMTNSTAASRPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP+ Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGVPQS 154
Query: 408 ASSALSQVTL-RLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSY 466
+ + Q+ L L + +G + +PY PM + G +D S G +
Sbjct: 155 VTECVKQICLVMLETLSQSPQGRVMT----IPYQPMPAS-SPVICAGGQDRCSDAAGYPH 209
Query: 467 ATGNLPG 473
AT +L G
Sbjct: 210 ATHDLEG 216
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR GA I+E+R + A I+I P V V ITGS
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----P-VEGSSGRQVTITGS--A 333
Query: 408 ASSALSQVTLRLRANT 423
AS +L+Q + R ++
Sbjct: 334 ASISLAQYLINARLSS 349
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ IR E+ A+I I + + P + ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA I +L E+
Sbjct: 60 TLTGPTNAIFKAFAMIIDKLEED 82
Score = 42 (19.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 249 NYSARRDEASARE-FSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
N S A++R +LRLV PA R+ +GA ++V
Sbjct: 84 NSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|I3LEC2 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0003697 GeneTree:ENSGT00550000074311 KO:K12889
OMA:RNISERN EMBL:CU928518 RefSeq:XP_003125105.1
Ensembl:ENSSSCT00000028976 GeneID:100511501 KEGG:ssc:100511501
Uniprot:I3LEC2
Length = 356
Score = 130 (50.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 RIREESGARINISEG--NCPERIITLTGPTNA--IFKAFAMIIDKLEEDI---------N 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P V + + QI
Sbjct: 141 STERAITIAGVPQSVTECVKQI 162
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 48/187 (25%), Positives = 77/187 (41%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 40 REESGARINISEGNCPERIITLTGPTNAIFK-AFAMIIDKLEEDINSSMTNSTAASRPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP+ Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGVPQS 154
Query: 408 ASSALSQVTL-RLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSY 466
+ + Q+ L L + +G + +PY PM + G +D S G +
Sbjct: 155 VTECVKQICLVMLETLSQSPQGRVMT----IPYQPMPAS-SPVICAGGQDRCSDAAGYPH 209
Query: 467 ATGNLPG 473
AT +L G
Sbjct: 210 ATHDLEG 216
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR GA I+E+R + A I+I P V V ITGS
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----P-VEGSSGRQVTITGS--A 333
Query: 408 ASSALSQVTLRLRANT 423
AS +L+Q + R ++
Sbjct: 334 ASISLAQYLINARLSS 349
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ IR E+ A+I I + + P + ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA I +L E+
Sbjct: 60 TLTGPTNAIFKAFAMIIDKLEED 82
Score = 42 (19.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 249 NYSARRDEASARE-FSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
N S A++R +LRLV PA R+ +GA ++V
Sbjct: 84 NSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>MGI|MGI:1345635 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003697
"single-stranded DNA binding" evidence=ISO] [GO:0003723 "RNA
binding" evidence=ISO;TAS] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=TAS] [GO:0008494 "translation activator
activity" evidence=TAS] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0045727 "positive regulation of translation"
evidence=TAS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 MGI:MGI:1345635 GO:GO:0005634
GO:GO:0006397 GO:GO:0003723 GO:GO:0008494 GO:GO:0003697
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
CTD:5093 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K12889
OMA:RNISERN OrthoDB:EOG46WZ8K ChiTaRS:PCBP1 EMBL:AF139894
EMBL:AF139895 EMBL:BC069915 EMBL:BC004793 IPI:IPI00128904
RefSeq:NP_035995.1 UniGene:Mm.274146 ProteinModelPortal:P60335
SMR:P60335 IntAct:P60335 STRING:P60335 PhosphoSite:P60335
REPRODUCTION-2DPAGE:IPI00128904 REPRODUCTION-2DPAGE:P60335
PaxDb:P60335 PRIDE:P60335 Ensembl:ENSMUST00000053015 GeneID:23983
KEGG:mmu:23983 InParanoid:P60335 NextBio:303869 Bgee:P60335
CleanEx:MM_PCBP1 Genevestigator:P60335
GermOnline:ENSMUSG00000051695 Uniprot:P60335
Length = 356
Score = 130 (50.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 RIREESGARINISEG--NCPERIITLTGPTNA--IFKAFAMIIDKLEEDI---------N 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P V + + QI
Sbjct: 141 STERAITIAGVPQSVTECVKQI 162
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 48/187 (25%), Positives = 77/187 (41%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 40 REESGARINISEGNCPERIITLTGPTNAIFK-AFAMIIDKLEEDINSSMTNSTAASRPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP+ Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGVPQS 154
Query: 408 ASSALSQVTL-RLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSY 466
+ + Q+ L L + +G + +PY PM + G +D S G +
Sbjct: 155 VTECVKQICLVMLETLSQSPQGRVMT----IPYQPMPAS-SPVICAGGQDRCSDAAGYPH 209
Query: 467 ATGNLPG 473
AT +L G
Sbjct: 210 ATHDLEG 216
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR GA I+E+R + A I+I P V V ITGS
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----P-VEGSSGRQVTITGS--A 333
Query: 408 ASSALSQVTLRLRANT 423
AS +L+Q + R ++
Sbjct: 334 ASISLAQYLINARLSS 349
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ IR E+ A+I I + + P + ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA I +L E+
Sbjct: 60 TLTGPTNAIFKAFAMIIDKLEED 82
Score = 42 (19.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 249 NYSARRDEASARE-FSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
N S A++R +LRLV PA R+ +GA ++V
Sbjct: 84 NSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>RGD|1561319 [details] [associations]
symbol:Pcbp1 "poly(rC) binding protein 1" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1561319 GO:GO:0003723 GO:GO:0003697 OMA:RNISERN
OrthoDB:EOG46WZ8K IPI:IPI00882480 ProteinModelPortal:D3ZS68
SMR:D3ZS68 PRIDE:D3ZS68 Ensembl:ENSRNOT00000023806 UCSC:RGD:1561319
Uniprot:D3ZS68
Length = 356
Score = 130 (50.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 RIREESGARINISEG--NCPERIITLTGPTNA--IFKAFAMIIDKLEEDI---------N 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P V + + QI
Sbjct: 141 STERAITIAGVPQSVTECVKQI 162
Score = 129 (50.5 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 48/187 (25%), Positives = 77/187 (41%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 40 REESGARINISEGNCPERIITLTGPTNAIFK-AFAMIIDKLEEDINSSMTNSTAASRPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP+ Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGVPQS 154
Query: 408 ASSALSQVTL-RLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSY 466
+ + Q+ L L + +G + +PY PM + G +D S G +
Sbjct: 155 VTECVKQICLVMLETLSQSPQGRVMT----IPYQPMPAS-SPVICAGGQDRCSDAAGYPH 209
Query: 467 ATGNLPG 473
AT +L G
Sbjct: 210 ATHDLEG 216
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR GA I+E+R + A I+I P V V ITGS
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----P-VEGSSGRQVTITGS--A 333
Query: 408 ASSALSQVTLRLRANT 423
AS +L+Q + R ++
Sbjct: 334 ASISLAQYLINARLSS 349
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ IR E+ A+I I + + P + ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA I +L E+
Sbjct: 60 TLTGPTNAIFKAFAMIIDKLEED 82
Score = 42 (19.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 249 NYSARRDEASARE-FSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
N S A++R +LRLV PA R+ +GA ++V
Sbjct: 84 NSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|J9P7Y9 [details] [associations]
symbol:PCBP1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 CTD:5093
KO:K12889 OMA:RNISERN EMBL:AAEX03007630 RefSeq:XP_538537.1
Ensembl:ENSCAFT00000005324 GeneID:481417 KEGG:cfa:481417
Uniprot:J9P7Y9
Length = 356
Score = 130 (50.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 41/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 RIREESGARINISEG--NCPERIITLTGPTNA--IFKAFAMIIDKLEEDI---------N 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P V + + QI
Sbjct: 141 STERAITIAGVPQSVTECVKQI 162
Score = 125 (49.1 bits), Expect = 6.5e-05, P = 6.5e-05
Identities = 47/187 (25%), Positives = 76/187 (40%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 40 REESGARINISEGNCPERIITLTGPTNAIFK-AFAMIIDKLEEDINSSMTNSTAASRPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP+ Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 99 TLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAGVPQS 154
Query: 408 ASSALSQVTL-RLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRGNSY 466
+ + Q+ L L + +G + +PY PM + G +D G +
Sbjct: 155 VTECVKQICLVMLETLSQSPQGRVMT----IPYQPMPAS-SPVICAGGQDRCGDAAGYPH 209
Query: 467 ATGNLPG 473
AT +L G
Sbjct: 210 ATHDLEG 216
Score = 93 (37.8 bits), Expect = 7.5e-11, Sum P(2) = 7.5e-11
Identities = 28/76 (36%), Positives = 41/76 (53%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR GA I+E+R + A I+I P V V ITGS
Sbjct: 281 THELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIAN----P-VEGSSGRQVTITGS--A 333
Query: 408 ASSALSQVTLRLRANT 423
AS +L+Q + R ++
Sbjct: 334 ASISLAQYLINARLSS 349
Score = 93 (37.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 23/83 (27%), Positives = 44/83 (53%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ IR E+ A+I I + + P + ++
Sbjct: 7 ESGLNVTLTIRLLMHGKEVGSIIGKKGESVKRIREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA I +L E+
Sbjct: 60 TLTGPTNAIFKAFAMIIDKLEED 82
Score = 42 (19.8 bits), Expect = 3.6e-07, Sum P(3) = 3.6e-07
Identities = 14/50 (28%), Positives = 21/50 (42%)
Query: 249 NYSARRDEASARE-FSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
N S A++R +LRLV PA R+ +GA ++V
Sbjct: 84 NSSMTNSTAASRPPVTLRLVVPATQCGSLIGKGGCKIKEIRESTGAQVQV 133
>WB|WBGene00003978 [details] [associations]
symbol:pes-4 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 EMBL:FO081827 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 RefSeq:NP_497351.3 ProteinModelPortal:Q95Y67
SMR:Q95Y67 PaxDb:Q95Y67 EnsemblMetazoa:Y119D3B.17 GeneID:175288
KEGG:cel:CELE_Y119D3B.17 UCSC:Y119D3B.17 CTD:175288
WormBase:Y119D3B.17 HOGENOM:HOG000020666 InParanoid:Q95Y67
OMA:PHSTERA NextBio:887534 Uniprot:Q95Y67
Length = 432
Score = 131 (51.2 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 37/130 (28%), Positives = 69/130 (53%)
Query: 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGS 404
P IT R++VP+ Q G LIG+GG+ I ++R AT ASI++ +E +P + E V ++G+
Sbjct: 151 PPITMRVIVPATQCGSLIGKGGSKIKDIREATGASIQV-ASEMLP---HSTERAVTLSGT 206
Query: 405 LDVASSALSQVT-LRLRANTFEREGALAAHPPVLPYVPMSLDITDGSKYGNRDNQSRGRG 463
D + ++QV + L A +G+ + P + P+++ T + + Q++ +
Sbjct: 207 ADAINLCMTQVCQILLEAPP---KGSTITYRPKPTFNPLAI-ATSAATIAAQQQQAQAQQ 262
Query: 464 NSYATGNLPG 473
A + G
Sbjct: 263 QLAAAALMGG 272
Score = 94 (38.1 bits), Expect = 9.1e-11, Sum P(2) = 9.1e-11
Identities = 22/77 (28%), Positives = 42/77 (54%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++T+R+L+ ++G +IGK G I+ IR E+ A+I I D P + ++ + G
Sbjct: 71 VLTIRLLMQGKEVGSIIGKKGDQIKKIREESGAKINI-SDGSCP------ERIVTITGTL 123
Query: 200 AVVRKALVQIASRLHEN 216
V+ KA + ++ E+
Sbjct: 124 GVIGKAFNMVCNKFEED 140
>UNIPROTKB|F1SFQ4 [details] [associations]
symbol:PCBP2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0050687 "negative regulation of defense response to
virus" evidence=IEA] [GO:0043161 "proteasomal ubiquitin-dependent
protein catabolic process" evidence=IEA] [GO:0031625 "ubiquitin
protein ligase binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0043161 GO:GO:0003723
GO:GO:0050687 GeneTree:ENSGT00550000074311 CTD:5094 KO:K13162
OMA:CVVMLEL EMBL:CU928648 RefSeq:NP_001231441.1 UniGene:Ssc.4977
Ensembl:ENSSSCT00000000294 GeneID:397665 KEGG:ssc:397665
ArrayExpress:F1SFQ4 Uniprot:F1SFQ4
Length = 353
Score = 127 (49.8 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 141 STERAITIAGIPQSIIECVKQI 162
Score = 95 (38.5 bits), Expect = 9.8e-11, Sum P(2) = 9.8e-11
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 280 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 332
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 333 SLAQYLINVRLSS 345
Score = 93 (37.8 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 46 (21.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 20/61 (32%), Positives = 27/61 (44%)
Query: 246 SYGN--YSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAE 303
++GN +SA D ASA+ S L P RQ SGA IK+ ++ E
Sbjct: 259 THGNTGFSAGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKI-ANPVE 316
Query: 304 G 304
G
Sbjct: 317 G 317
Score = 40 (19.1 bits), Expect = 3.3e-07, Sum P(3) = 3.3e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|Q15366 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0051607 "defense
response to virus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IDA] [GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737
"cytoplasm" evidence=IDA;NAS] [GO:0016071 "mRNA metabolic process"
evidence=NAS] [GO:0031625 "ubiquitin protein ligase binding"
evidence=IPI] [GO:0050687 "negative regulation of defense response
to virus" evidence=IMP] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=IMP]
[GO:0005515 "protein binding" evidence=IPI] [GO:0019899 "enzyme
binding" evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=TAS] [GO:0005654 "nucleoplasm" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0032480 "negative
regulation of type I interferon production" evidence=TAS]
[GO:0045087 "innate immune response" evidence=TAS] [GO:0005730
"nucleolus" evidence=IDA] Reactome:REACT_71 InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005829 Reactome:REACT_6900 GO:GO:0005654 GO:GO:0043161
GO:GO:0003677 Reactome:REACT_1675 GO:GO:0045087 EMBL:CH471054
GO:GO:0051607 GO:GO:0003723 GO:GO:0030529 EMBL:AC068889
GO:GO:0000398 EMBL:AC023509 GO:GO:0032480 GO:GO:0050687
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
EMBL:X78136 EMBL:AB188306 EMBL:AK292141 EMBL:AB208825 EMBL:BC001155
EMBL:BC071942 EMBL:BC107688 IPI:IPI00012066 IPI:IPI00216689
IPI:IPI00470509 IPI:IPI00791223 IPI:IPI00796337 PIR:S65679
RefSeq:NP_001092090.1 RefSeq:NP_001122383.1 RefSeq:NP_001122384.1
RefSeq:NP_001122385.1 RefSeq:NP_001122386.1 RefSeq:NP_005007.2
RefSeq:NP_114366.1 UniGene:Hs.546271 PDB:2AXY PDB:2JZX PDB:2P2R
PDB:2PQU PDB:2PY9 PDBsum:2AXY PDBsum:2JZX PDBsum:2P2R PDBsum:2PQU
PDBsum:2PY9 ProteinModelPortal:Q15366 SMR:Q15366 DIP:DIP-58934N
IntAct:Q15366 MINT:MINT-96192 STRING:Q15366 PhosphoSite:Q15366
DMDM:6707736 PaxDb:Q15366 PeptideAtlas:Q15366 PRIDE:Q15366
DNASU:5094 Ensembl:ENST00000359282 Ensembl:ENST00000359462
Ensembl:ENST00000439930 Ensembl:ENST00000447282
Ensembl:ENST00000546463 Ensembl:ENST00000548933
Ensembl:ENST00000552296 GeneID:5094 KEGG:hsa:5094 UCSC:uc001sdl.4
CTD:5094 GeneCards:GC12P053844 HGNC:HGNC:8648 HPA:HPA038356
MIM:601210 neXtProt:NX_Q15366 PharmGKB:PA32987 InParanoid:Q15366
KO:K13162 OMA:CVVMLEL ChiTaRS:PCBP2 EvolutionaryTrace:Q15366
GenomeRNAi:5094 NextBio:19648 ArrayExpress:Q15366 Bgee:Q15366
CleanEx:HS_PCBP2 Genevestigator:Q15366 GermOnline:ENSG00000197111
Uniprot:Q15366
Length = 365
Score = 127 (49.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 141 STERAITIAGIPQSIIECVKQI 162
Score = 95 (38.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 344
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 345 SLAQYLINVRLSS 357
Score = 93 (37.8 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 47 (21.6 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 21/70 (30%), Positives = 28/70 (40%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y +ASA+ S L P RQ SGA
Sbjct: 266 SGIESSSPEVKGYWGL-----DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 320
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 321 IKI-ANPVEG 329
Score = 40 (19.1 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>RGD|1309626 [details] [associations]
symbol:Pcbp2 "poly(rC) binding protein 2" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=ISO] [GO:0005634
"nucleus" evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO]
[GO:0019899 "enzyme binding" evidence=ISO] [GO:0031625 "ubiquitin
protein ligase binding" evidence=ISO] [GO:0043161 "proteasomal
ubiquitin-dependent protein catabolic process" evidence=ISO]
[GO:0050687 "negative regulation of defense response to virus"
evidence=ISO] [GO:0005730 "nucleolus" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1309626 GO:GO:0003723 eggNOG:NOG315872
HOVERGEN:HBG053520 CTD:5094 KO:K13162 IPI:IPI00464805 EMBL:BC078906
RefSeq:NP_001013241.1 UniGene:Rn.106644 ProteinModelPortal:Q6AYU5
SMR:Q6AYU5 PRIDE:Q6AYU5 GeneID:363005 KEGG:rno:363005
UCSC:RGD:1309626 NextBio:682109 Genevestigator:Q6AYU5
Uniprot:Q6AYU5
Length = 365
Score = 127 (49.8 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 141 STERAITIAGIPQSIIECVKQI 162
Score = 95 (38.5 bits), Expect = 1.1e-10, Sum P(2) = 1.1e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 292 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 344
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 345 SLAQYLINVRLSS 357
Score = 93 (37.8 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 23/83 (27%), Positives = 45/83 (54%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + + P + ++
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINI-SEGNCP------ERII 59
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+AG + KA I +L E+
Sbjct: 60 TLAGPTNAIFKAFAMIIDKLEED 82
Score = 47 (21.6 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 21/70 (30%), Positives = 28/70 (40%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y +ASA+ S L P RQ SGA
Sbjct: 266 SGIESSSPEVKGYWGL-----DASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 320
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 321 IKI-ANPVEG 329
Score = 40 (19.1 bits), Expect = 3.9e-07, Sum P(3) = 3.9e-07
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 93 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 133
>UNIPROTKB|F1NPL3 [details] [associations]
symbol:PCBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:AADN02008174
IPI:IPI00591502 Ensembl:ENSGALT00000021483 OMA:DLNMNLS
ArrayExpress:F1NPL3 Uniprot:F1NPL3
Length = 356
Score = 130 (50.8 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 45/142 (31%), Positives = 73/142 (51%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERIVTI ++ F + + AL + + I A
Sbjct: 37 KMREESGARINISEG--SCPERIVTITGPTDAI--------FKAFSMIAL-KFEEDINA- 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 -SMTNSTVTSKPPVTLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQVAGDM-LPN--- 139
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + ++G P + + + QI
Sbjct: 140 STERAVTISGTPDAIIQCVKQI 161
Score = 122 (48.0 bits), Expect = 0.00014, P = 0.00014
Identities = 36/128 (28%), Positives = 58/128 (45%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + I T F+ S I S + P +
Sbjct: 39 REESGARINISEGSCPERIVTITGPTDAIFKAFS-MIALKFEEDINASMTNSTVTSKPPV 97
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++VP++Q G LIG+GG+ I E+R +T A +++ + +P E V I+G+ D
Sbjct: 98 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDMLPN---STERAVTISGTPDA 153
Query: 408 ASSALSQV 415
+ Q+
Sbjct: 154 IIQCVKQI 161
Score = 89 (36.4 bits), Expect = 1.9e-10, Sum P(2) = 1.9e-10
Identities = 26/83 (31%), Positives = 47/83 (56%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
++ P + + +P+ IGC+IGR G+ I+E+R + A I+I N + + E + V
Sbjct: 274 DATSPTSSHELTIPNDLIGCIIGRQGSKINEIRQMSGAQIKIA---NATEGSAERQ--VT 328
Query: 401 ITGSLDVASSALSQVTLRLRANT 423
ITGS A+ +L+Q + R ++
Sbjct: 329 ITGS--PANISLAQYLINARLSS 349
Score = 88 (36.0 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 22/83 (26%), Positives = 43/83 (51%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
E G +T+R+L+ ++G +IGK G+ ++ +R E+ A+I I + C + ++
Sbjct: 6 EGGLNVTLTIRLLMHGKEVGSIIGKKGETVKKMREESGARINISEGS----CP---ERIV 58
Query: 194 QVAGEPAVVRKALVQIASRLHEN 216
+ G + KA IA + E+
Sbjct: 59 TITGPTDAIFKAFSMIALKFEED 81
Score = 39 (18.8 bits), Expect = 6.4e-06, Sum P(3) = 6.4e-06
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 98 TLRLVVPASQCGSLIGKGGSKIKEIRESTGAQVQV 132
Score = 38 (18.4 bits), Expect = 3.4e-05, Sum P(2) = 3.4e-05
Identities = 9/17 (52%), Positives = 12/17 (70%)
Query: 288 RQESGASIKVDSSGAEG 304
RQ SGA IK+ ++ EG
Sbjct: 306 RQMSGAQIKI-ANATEG 321
>UNIPROTKB|P57723 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003677 "DNA binding" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0003723 "RNA binding" evidence=NAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 eggNOG:NOG315872 HOGENOM:HOG000182823
HOVERGEN:HBG053520 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR EMBL:AF176330 EMBL:AK023993 EMBL:BC003008
EMBL:BC004153 EMBL:BC017098 IPI:IPI00027973 IPI:IPI00386254
RefSeq:NP_001167571.1 RefSeq:NP_065151.2 RefSeq:NP_127501.1
RefSeq:NP_127503.1 UniGene:Hs.20930 ProteinModelPortal:P57723
SMR:P57723 IntAct:P57723 MINT:MINT-2873350 STRING:P57723
PhosphoSite:P57723 DMDM:12230429 PRIDE:P57723
Ensembl:ENST00000322099 Ensembl:ENST00000355852
Ensembl:ENST00000428823 Ensembl:ENST00000461554
Ensembl:ENST00000484633 GeneID:57060 KEGG:hsa:57060 UCSC:uc003dce.2
UCSC:uc003dck.2 GeneCards:GC03M051991 HGNC:HGNC:8652 MIM:608503
neXtProt:NX_P57723 PharmGKB:PA32991 GenomeRNAi:57060 NextBio:62848
ArrayExpress:P57723 Bgee:P57723 CleanEx:HS_PCBP4
Genevestigator:P57723 GermOnline:ENSG00000090097 Uniprot:P57723
Length = 403
Score = 120 (47.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCA- 89
Query: 128 DSLADDEFGELTL--ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
A G ++ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 90 ---APANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LL 142
Query: 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + V+G P + + QI + + E+P
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESP 174
Score = 98 (39.6 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 39/109 (35%), Positives = 53/109 (48%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
+ G + LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 290
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G ++ P LP P S +T
Sbjct: 291 ITGS--PVSIALAQYLITACLETAKSTSGGTPSSAPADLP-APFSPPLT 336
Score = 97 (39.2 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>UNIPROTKB|I3LRN5 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 OMA:MSSSDAG
EMBL:FP102591 Ensembl:ENSSSCT00000026653 Uniprot:I3LRN5
Length = 404
Score = 120 (47.3 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCA- 89
Query: 128 DSLADDEFGELTL--ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
A G ++ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 90 ---APANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LL 142
Query: 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + V+G P + + QI + + E+P
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESP 174
Score = 98 (39.6 bits), Expect = 4.8e-10, Sum P(2) = 4.8e-10
Identities = 39/109 (35%), Positives = 53/109 (48%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
+ G + LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 237 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 291
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G ++ P LP P S +T
Sbjct: 292 ITGS--PVSIALAQYLITACLETAKSTSGGTPSSAPTDLP-APFSPPLT 337
Score = 97 (39.2 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 39 (18.8 bits), Expect = 1.4e-07, Sum P(3) = 1.4e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>UNIPROTKB|F8VRG9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022480
ProteinModelPortal:F8VRG9 SMR:F8VRG9 PRIDE:F8VRG9
Ensembl:ENST00000552083 ArrayExpress:F8VRG9 Bgee:F8VRG9
Uniprot:F8VRG9
Length = 323
Score = 119 (46.9 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 31/114 (27%), Positives = 61/114 (53%)
Query: 104 EDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVI 163
++ G + +++ ++ + ++ S+ + +T+R++VPA Q G +IGKGG I
Sbjct: 23 KEVGSIIGKKGESVKKMREEDISS-SMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKI 81
Query: 164 QNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
+ IR T AQ+++ D LP S + + +AG P + + + QI + E+P
Sbjct: 82 KEIRESTGAQVQVAGDM-LPN---STERAITIAGIPQSIIECVKQICVVMLESP 131
Score = 98 (39.6 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/59 (35%), Positives = 35/59 (59%)
Query: 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG 403
P +T R++VP++Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 57 PPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAG 111
Score = 95 (38.5 bits), Expect = 5.7e-10, Sum P(2) = 5.7e-10
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 250 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 302
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 303 SLAQYLINVRLSS 315
Score = 66 (28.3 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 12/36 (33%), Positives = 23/36 (63%)
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTE 169
E G +T+R+L+ ++G +IGK G+ ++ +R E
Sbjct: 7 EGGLNVTLTIRLLMHGKEVGSIIGKKGESVKKMREE 42
Score = 47 (21.6 bits), Expect = 4.9e-05, Sum P(2) = 4.9e-05
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y A D ASA+ S L P RQ SGA
Sbjct: 223 SGIESSSPEVKGYW---AGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 278
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 279 IKI-ANPVEG 287
Score = 40 (19.1 bits), Expect = 0.00011, Sum P(3) = 0.00011
Identities = 12/41 (29%), Positives = 17/41 (41%)
Query: 257 ASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
AS +LRLV PA R+ +GA ++V
Sbjct: 54 ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV 94
>UNIPROTKB|E2RG64 [details] [associations]
symbol:PCBP4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311 KO:K13162
CTD:57060 OMA:MSSSDAG EMBL:AAEX03012201 RefSeq:XP_849987.1
Ensembl:ENSCAFT00000015946 GeneID:476603 KEGG:cfa:476603
NextBio:20852230 Uniprot:E2RG64
Length = 403
Score = 120 (47.3 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCA- 89
Query: 128 DSLADDEFGELTL--ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
A G ++ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 90 ---APANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LL 142
Query: 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + V+G P + + QI + + E+P
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESP 174
Score = 97 (39.2 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 96 (38.9 bits), Expect = 7.7e-10, Sum P(2) = 7.7e-10
Identities = 39/109 (35%), Positives = 52/109 (47%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
+ G + LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 236 DPGAQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 290
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G + P LP P S +T
Sbjct: 291 ITGS--PVSIALAQYLITACLETAKSTSGGTPGSAPTDLP-APFSPPLT 336
Score = 39 (18.8 bits), Expect = 2.2e-07, Sum P(3) = 2.2e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>UNIPROTKB|Q0VCU0 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9913 "Bos
taurus" [GO:0005737 "cytoplasm" evidence=IEA] [GO:0030529
"ribonucleoprotein complex" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0003677 GO:GO:0003723
GO:GO:0030529 GeneTree:ENSGT00550000074311 eggNOG:NOG315872
HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162 EMBL:BC120009
IPI:IPI00707807 RefSeq:NP_001068751.1 UniGene:Bt.7587
ProteinModelPortal:Q0VCU0 SMR:Q0VCU0 PRIDE:Q0VCU0
Ensembl:ENSBTAT00000024779 GeneID:506889 KEGG:bta:506889 CTD:57060
InParanoid:Q0VCU0 OMA:MSSSDAG OrthoDB:EOG48D0VR NextBio:20867786
Uniprot:Q0VCU0
Length = 403
Score = 120 (47.3 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCA- 89
Query: 128 DSLADDEFGELTL--ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
A G ++ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 90 ---APANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LL 142
Query: 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + V+G P + + QI + + E+P
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESP 174
Score = 97 (39.2 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 95 (38.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 41/109 (37%), Positives = 52/109 (47%)
Query: 344 DPVITT---RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
DP T LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 290
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G + P LP P S +T
Sbjct: 291 ITGS--PVSIALAQYLITACLETAKSTSGGTPGSAPTDLP-APFSPPLT 336
Score = 39 (18.8 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>MGI|MGI:1890471 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10090 "Mus
musculus" [GO:0003677 "DNA binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=ISO] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006977 "DNA damage response, signal transduction by p53 class
mediator resulting in cell cycle arrest" evidence=ISO] [GO:0007050
"cell cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:1890471 GO:GO:0005737 GO:GO:0003677
GO:GO:0003723 GO:GO:0030529 GeneTree:ENSGT00550000074311
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520 KO:K13162
CTD:57060 OrthoDB:EOG48D0VR EMBL:AF176328 EMBL:BC010694
IPI:IPI00118718 RefSeq:NP_067542.3 UniGene:Mm.286394
ProteinModelPortal:P57724 SMR:P57724 STRING:P57724
PhosphoSite:P57724 PaxDb:P57724 PRIDE:P57724
Ensembl:ENSMUST00000024260 GeneID:59092 KEGG:mmu:59092
InParanoid:P57724 NextBio:314742 Bgee:P57724 CleanEx:MM_PCBP4
Genevestigator:P57724 GermOnline:ENSMUSG00000023495 Uniprot:P57724
Length = 403
Score = 120 (47.3 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 43/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCAA 90
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
A+ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 91 P--ANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LLPN 144
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + V+G P + + QI + + E+P
Sbjct: 145 STERAVTVSGVPDAIILCVRQICAVILESP 174
Score = 97 (39.2 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEGPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 95 (38.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 41/109 (37%), Positives = 52/109 (47%)
Query: 344 DPVITT---RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
DP T LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 290
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G + P LP P S +T
Sbjct: 291 ITGS--PVSIALAQYLITACLETAKSTSGGTPGSAPADLP-TPFSPPLT 336
Score = 39 (18.8 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>RGD|1307910 [details] [associations]
symbol:Pcbp4 "poly(rC) binding protein 4" species:10116 "Rattus
norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO] [GO:0006977
"DNA damage response, signal transduction by p53 class mediator
resulting in cell cycle arrest" evidence=ISO] [GO:0007050 "cell
cycle arrest" evidence=ISO] [GO:0008630 "intrinsic apoptotic
signaling pathway in response to DNA damage" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307910 GO:GO:0003723
GeneTree:ENSGT00550000074311 KO:K13162 CTD:57060 OMA:MSSSDAG
OrthoDB:EOG48D0VR IPI:IPI00366708 RefSeq:NP_001178812.1
UniGene:Rn.40405 Ensembl:ENSRNOT00000017139 GeneID:363133
KEGG:rno:363133 UCSC:RGD:1307910 NextBio:682555 Uniprot:D3ZCS3
Length = 403
Score = 120 (47.3 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 43/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCAA 90
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
A+ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 91 P--ANGGSVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LLPN 144
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + V+G P + + QI + + E+P
Sbjct: 145 STERAVTVSGVPDAIILCVRQICAVILESP 174
Score = 97 (39.2 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 95 (38.5 bits), Expect = 9.8e-10, Sum P(2) = 9.8e-10
Identities = 41/109 (37%), Positives = 52/109 (47%)
Query: 344 DPVITT---RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
DP T LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 236 DPSTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 290
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G + P LP P S +T
Sbjct: 291 ITGS--PVSIALAQYLITACLETAKSTSGGTPGSAPADLP-TPFSPPLT 336
Score = 39 (18.8 bits), Expect = 2.8e-07, Sum P(3) = 2.8e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>UNIPROTKB|C9J0A4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00385206 ProteinModelPortal:C9J0A4 SMR:C9J0A4
STRING:C9J0A4 Ensembl:ENST00000471622 ArrayExpress:C9J0A4
Bgee:C9J0A4 Uniprot:C9J0A4
Length = 323
Score = 120 (47.3 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 44/152 (28%), Positives = 76/152 (50%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCA- 89
Query: 128 DSLADDEFGELTL--ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
A G ++ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 90 ---APANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LL 142
Query: 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + V+G P + + QI + + E+P
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICAVILESP 174
Score = 97 (39.2 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
Score = 88 (36.0 bits), Expect = 2.3e-09, Sum P(2) = 2.3e-09
Identities = 30/74 (40%), Positives = 40/74 (54%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
+ G + LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 236 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 290
Query: 401 ITGSLDVASSALSQ 414
ITGS S AL+Q
Sbjct: 291 ITGS--PVSIALAQ 302
Score = 39 (18.8 bits), Expect = 5.2e-07, Sum P(3) = 5.2e-07
Identities = 10/35 (28%), Positives = 15/35 (42%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+ +GA ++V
Sbjct: 103 TLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQV 137
>UNIPROTKB|F8VWQ4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021922
ProteinModelPortal:F8VWQ4 SMR:F8VWQ4 PRIDE:F8VWQ4
Ensembl:ENST00000550927 ArrayExpress:F8VWQ4 Bgee:F8VWQ4
Uniprot:F8VWQ4
Length = 308
Score = 110 (43.8 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 27/69 (39%), Positives = 42/69 (60%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
+T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP S + + +AG P
Sbjct: 40 VTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN---STERAITIAGIPQ 95
Query: 201 VVRKALVQI 209
+ + + QI
Sbjct: 96 SIIECVKQI 104
Score = 95 (38.5 bits), Expect = 5.1e-09, Sum P(2) = 5.1e-09
Identities = 27/73 (36%), Positives = 42/73 (57%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+I P D + V ITGS AS
Sbjct: 235 LTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIAN----PVEGSTDRQ-VTITGS--AASI 287
Query: 411 ALSQVTLRLRANT 423
+L+Q + +R ++
Sbjct: 288 SLAQYLINVRLSS 300
Score = 47 (21.6 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 23/70 (32%), Positives = 29/70 (41%)
Query: 235 SGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGAS 294
SG+ S+P V Y A D ASA+ S L P RQ SGA
Sbjct: 208 SGIESSSPEVKGYW---AGLD-ASAQTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQ 263
Query: 295 IKVDSSGAEG 304
IK+ ++ EG
Sbjct: 264 IKI-ANPVEG 272
>UNIPROTKB|Q9UNW9 [details] [associations]
symbol:NOVA2 "RNA-binding protein Nova-2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=NAS] [GO:0005634
"nucleus" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 EMBL:AF083898
GO:GO:0005634 GO:GO:0003723 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 KO:K14944 EMBL:U70477 EMBL:AC006540
IPI:IPI00156005 RefSeq:NP_002507.1 UniGene:Hs.375439 PDB:1DTJ
PDB:1EC6 PDBsum:1DTJ PDBsum:1EC6 ProteinModelPortal:Q9UNW9
SMR:Q9UNW9 STRING:Q9UNW9 PhosphoSite:Q9UNW9 DMDM:33516944
PRIDE:Q9UNW9 DNASU:4858 Ensembl:ENST00000263257 GeneID:4858
KEGG:hsa:4858 UCSC:uc002pdv.2 CTD:4858 GeneCards:GC19M046442
HGNC:HGNC:7887 HPA:HPA045607 MIM:601991 neXtProt:NX_Q9UNW9
PharmGKB:PA31689 InParanoid:Q9UNW9 OMA:TPPEVVC PhylomeDB:Q9UNW9
EvolutionaryTrace:Q9UNW9 GenomeRNAi:4858 NextBio:18718
ArrayExpress:Q9UNW9 Bgee:Q9UNW9 CleanEx:HS_NOVA2
Genevestigator:Q9UNW9 GermOnline:ENSG00000104967 Uniprot:Q9UNW9
Length = 492
Score = 124 (48.7 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 46/192 (23%), Positives = 86/192 (44%)
Query: 34 TEQRGIGSEDTVY-RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDER 89
T++ G E + + L P QL+ ET + I++S++ PG ER
Sbjct: 22 TKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTER 81
Query: 90 IVTIYSSSEGTNLFEDS-GEFVSPAQDALFR--VHDRIVAEDSLADDEFGELTLITVRML 146
+ + ++E N E V A+ + V + + + ++ D + LI
Sbjct: 82 VCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLI----- 136
Query: 147 VPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVRKA 205
VP G +IGKGG ++ + ++ A +++ K E + L + ++ V+GEP V KA
Sbjct: 137 VPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQ----ERVVTVSGEPEQVHKA 192
Query: 206 LVQIASRLHENP 217
+ I ++ E+P
Sbjct: 193 VSAIVQKVQEDP 204
Score = 84 (34.6 bits), Expect = 8.8e-09, Sum P(2) = 8.8e-09
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTN-ENVPKVAY 393
+EK ES ++ I VP +G ++G+GG + E + T A I+I E +P
Sbjct: 397 AEKLAAESAKELV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTR- 453
Query: 394 EDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHP 434
V ITGS A++ +Q + R T+E +G A++P
Sbjct: 454 --NRRVTITGS--PAATQAAQYLISQRV-TYE-QGVRASNP 488
>TAIR|locus:2120755 [details] [associations]
symbol:PEP "AT4G26000" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0048367 "shoot system development" evidence=IMP]
[GO:0048467 "gynoecium development" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002687 GenomeReviews:CT486007_GR EMBL:AL161564
EMBL:AL049483 GO:GO:0003723 GO:GO:0048367 GO:GO:0048467 HSSP:Q96AE4
KO:K13162 EMBL:AY056288 EMBL:AY099659 EMBL:AY114064 IPI:IPI00547245
PIR:T04255 RefSeq:NP_194330.1 UniGene:At.23137 UniGene:At.66652
ProteinModelPortal:Q9SZH4 SMR:Q9SZH4 IntAct:Q9SZH4 STRING:Q9SZH4
PaxDb:Q9SZH4 PRIDE:Q9SZH4 EnsemblPlants:AT4G26000.1 GeneID:828706
KEGG:ath:AT4G26000 TAIR:At4g26000 eggNOG:NOG314569
HOGENOM:HOG000243588 InParanoid:Q9SZH4 OMA:MCEETRA PhylomeDB:Q9SZH4
ProtClustDB:CLSN2685896 Genevestigator:Q9SZH4 Uniprot:Q9SZH4
Length = 495
Score = 166 (63.5 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 53/201 (26%), Positives = 90/201 (44%)
Query: 16 QSDAATNGGSKRRNPGDETEQRGIG-SEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETK 74
Q D+ + + D E+R G D V+R + P+ ++ ET+
Sbjct: 45 QPDSLAAAETTFPDTNDSAEERWPGWPGDCVFRMIVPVTKVGAIIGRKGDFIKKMCEETR 104
Query: 75 SNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDE 134
+ I++ + +RIV I E+ ++SPA DA+ RV R+ DD+
Sbjct: 105 ARIKVLDGPVNTPDRIVLISGK-------EEPEAYMSPAMDAVLRVFRRVSGLPDNDDDD 157
Query: 135 FGELTLI--TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDEL 192
+ +VR+LV + Q +IGK G +I++I + A +RIL +E P A + +
Sbjct: 158 VQNAGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERI 217
Query: 193 LQVAGEPAVVRKALVQIASRL 213
+ + GE + KAL I L
Sbjct: 218 VDLQGEALKILKALEAIVGHL 238
Score = 137 (53.3 bits), Expect = 5.5e-06, P = 5.5e-06
Identities = 47/139 (33%), Positives = 68/139 (48%)
Query: 289 QESGASIKVDSSGAEGDDCIIFISTKEFFED-PSPTITAALRLQPRCSEKTERESGD--- 344
+E+ A IKV D I+ IS KE E SP + A LR+ R S + + D
Sbjct: 101 EETRARIKVLDGPVNTPDRIVLISGKEEPEAYMSPAMDAVLRVFRRVSGLPDNDDDDVQN 160
Query: 345 --PVITT-RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQI 401
V ++ R+LV S Q LIG+ G++I + + AS+RIL+ E P A +DE +V +
Sbjct: 161 AGSVFSSVRLLVASTQAINLIGKQGSLIKSIVENSGASVRILSEEETPFYAAQDERIVDL 220
Query: 402 TGSLDVASSALSQVTLRLR 420
G AL + LR
Sbjct: 221 QGEALKILKALEAIVGHLR 239
Score = 38 (18.4 bits), Expect = 1.0e-08, Sum P(2) = 1.0e-08
Identities = 11/48 (22%), Positives = 25/48 (52%)
Query: 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYE 394
++ + +P + +IG GA I+ +R + A+I I + + ++ E
Sbjct: 341 VSQTMQIPFSYAEDIIGVEGANIAYIRRRSGATITIKESPHPDQITVE 388
>UNIPROTKB|F1RM28 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:FP102597 Ensembl:ENSSSCT00000003434 Uniprot:F1RM28
Length = 554
Score = 124 (48.7 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 46/192 (23%), Positives = 86/192 (44%)
Query: 34 TEQRGIGSEDTVY-RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDER 89
T++ G E + + L P QL+ ET + I++S++ PG ER
Sbjct: 84 TKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTER 143
Query: 90 IVTIYSSSEGTNLFEDS-GEFVSPAQDALFR--VHDRIVAEDSLADDEFGELTLITVRML 146
+ + ++E N E V A+ + V + + + ++ D + LI
Sbjct: 144 VCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLI----- 198
Query: 147 VPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVRKA 205
VP G +IGKGG ++ + ++ A +++ K E + L + ++ V+GEP V KA
Sbjct: 199 VPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQ----ERVVTVSGEPEQVHKA 254
Query: 206 LVQIASRLHENP 217
+ I ++ E+P
Sbjct: 255 VSAIVQKVQEDP 266
Score = 84 (34.6 bits), Expect = 1.2e-08, Sum P(2) = 1.2e-08
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTN-ENVPKVAY 393
+EK ES ++ I VP +G ++G+GG + E + T A I+I E +P
Sbjct: 459 AEKLAAESAKELV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTR- 515
Query: 394 EDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHP 434
V ITGS A++ +Q + R T+E +G A++P
Sbjct: 516 --NRRVTITGS--PAATQAAQYLISQRV-TYE-QGVRASNP 550
>RGD|1308032 [details] [associations]
symbol:Nova2 "neuro-oncological ventral antigen 2" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA;ISO]
[GO:0005634 "nucleus" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
RGD:1308032 GO:GO:0005634 GO:GO:0003723
GeneTree:ENSGT00650000093048 IPI:IPI00958388
Ensembl:ENSRNOT00000057965 Uniprot:F1M4H5
Length = 516
Score = 122 (48.0 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 48/194 (24%), Positives = 86/194 (44%)
Query: 32 DETEQRGIGSEDTVY-RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCD 87
DE G G E + + L P QL+ ET + I++S++ PG
Sbjct: 44 DERGWGGRGWEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTT 103
Query: 88 ERIVTIYSSSEGTNLFEDS-GEFVSPAQDALFR--VHDRIVAEDSLADDEFGELTLITVR 144
ER+ + ++E N E V A+ + V + + + ++ D + LI
Sbjct: 104 ERVCLVQGTAEALNAAHSFIAEKVREIPQAMTKPEVVNILQPQTTMNPDRAKQAKLI--- 160
Query: 145 MLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVR 203
VP G +IGKGG ++ + ++ A +++ K E + L + ++ V+GEP V
Sbjct: 161 --VPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQ----ERVVTVSGEPEQVH 214
Query: 204 KALVQIASRLHENP 217
KA+ I ++ E+P
Sbjct: 215 KAVSAIVQKVQEDP 228
Score = 84 (34.6 bits), Expect = 1.7e-08, Sum P(2) = 1.7e-08
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTN-ENVPKVAY 393
+EK ES ++ I VP +G ++G+GG + E + T A I+I E +P
Sbjct: 421 AEKLAAESAKELV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTR- 477
Query: 394 EDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHP 434
V ITGS A++ +Q + R T+E +G A++P
Sbjct: 478 --NRRVTITGS--PAATQAAQYLISQRV-TYE-QGVRASNP 512
>UNIPROTKB|F1MS84 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:DAAA02047389 IPI:IPI00703570 Ensembl:ENSBTAT00000017485
Uniprot:F1MS84
Length = 464
Score = 120 (47.3 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 41/157 (26%), Positives = 77/157 (49%)
Query: 68 QLRSETKSNIRISET---VPGCDERIVTIYSSSEGTNLFEDS-GEFVSPAQDALFR--VH 121
QL+ ET + I++S++ PG ER+ + ++E N E V A+ + V
Sbjct: 29 QLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVV 88
Query: 122 DRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDE 180
+ + + ++ D + LI VP G +IGKGG ++ + ++ A +++ K E
Sbjct: 89 NILQPQTTMNPDRAKQAKLI-----VPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPE 143
Query: 181 HLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
+ L + ++ V+GEP V KA+ I ++ E+P
Sbjct: 144 GINLQ----ERVVTVSGEPEQVHKAVSAIVQKVQEDP 176
Score = 84 (34.6 bits), Expect = 2.1e-08, Sum P(2) = 2.1e-08
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTN-ENVPKVAY 393
+EK ES ++ I VP +G ++G+GG + E + T A I+I E +P
Sbjct: 369 AEKLAAESAKELV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTR- 425
Query: 394 EDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHP 434
V ITGS A++ +Q + R T+E +G A++P
Sbjct: 426 --NRRVTITGS--PAATQAAQYLISQRV-TYE-QGVRASNP 460
Score = 81 (33.6 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
+++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 7 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 44
>UNIPROTKB|F1PUD6 [details] [associations]
symbol:NOVA2 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0005634 "nucleus" evidence=IEA] [GO:0003723
"RNA binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005634
GO:GO:0003723 GeneTree:ENSGT00650000093048 OMA:TPPEVVC
EMBL:AAEX03000869 EMBL:AAEX03000868 Ensembl:ENSCAFT00000006989
Uniprot:F1PUD6
Length = 502
Score = 120 (47.3 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 41/157 (26%), Positives = 77/157 (49%)
Query: 68 QLRSETKSNIRISET---VPGCDERIVTIYSSSEGTNLFEDS-GEFVSPAQDALFR--VH 121
QL+ ET + I++S++ PG ER+ + ++E N E V A+ + V
Sbjct: 67 QLQKETGATIKLSKSKDFYPGTTERVCLVQGTAEALNAVHSFIAEKVREIPQAMTKPEVV 126
Query: 122 DRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDE 180
+ + + ++ D + LI VP G +IGKGG ++ + ++ A +++ K E
Sbjct: 127 NILQPQTTMNPDRAKQAKLI-----VPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPE 181
Query: 181 HLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
+ L + ++ V+GEP V KA+ I ++ E+P
Sbjct: 182 GINLQ----ERVVTVSGEPEQVHKAVSAIVQKVQEDP 214
Score = 84 (34.6 bits), Expect = 2.6e-08, Sum P(2) = 2.6e-08
Identities = 31/101 (30%), Positives = 50/101 (49%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTN-ENVPKVAY 393
+EK ES ++ I VP +G ++G+GG + E + T A I+I E +P
Sbjct: 407 AEKLAAESAKELV--EIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLPGTR- 463
Query: 394 EDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHP 434
V ITGS A++ +Q + R T+E +G A++P
Sbjct: 464 --NRRVTITGS--PAATQAAQYLISQRV-TYE-QGVRASNP 498
Score = 82 (33.9 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 131 ADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
A E GE L ++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 36 APAEEGEYFL---KVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 82
>UNIPROTKB|D3DS81 [details] [associations]
symbol:NOVA1 "Neuro-oncological ventral antigen 1, isoform
CRA_a" species:9606 "Homo sapiens" [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:CH471078
RefSeq:NP_006480.2 UniGene:Hs.31588 GeneID:4857 KEGG:hsa:4857
CTD:4857 HGNC:HGNC:7886 HOGENOM:HOG000007833 KO:K14944
ChiTaRS:NOVA1 GenomeRNAi:4857 NextBio:18710 EMBL:AL079343
EMBL:AL132716 IPI:IPI00956017 SMR:D3DS81 Ensembl:ENST00000465357
UCSC:uc001wpz.3 Uniprot:D3DS81
Length = 483
Score = 109 (43.4 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 44/192 (22%), Positives = 85/192 (44%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDE 88
T++ G ED Y + L P QL+ ET + I++S++ PG E
Sbjct: 39 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 97
Query: 89 RIVTIYSSSEGTNLFEDS-GEFVSPAQDALFRVHD-RIVAEDSLADDEFGELTLITVRML 146
R+ I + E N E + + + I+ + + + + V+++
Sbjct: 98 RVCLIQGTVEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPD----RIKQVKII 153
Query: 147 VPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVRKA 205
VP G +IGKGG ++ + ++ A +++ K + + L + ++ V+GEP RKA
Sbjct: 154 VPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQNRKA 209
Query: 206 LVQIASRLHENP 217
+ I ++ E+P
Sbjct: 210 VELIIQKIQEDP 221
Score = 91 (37.1 bits), Expect = 7.2e-08, Sum P(2) = 7.2e-08
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 370 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 422
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 423 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 475
Query: 431 AAHP 434
AA+P
Sbjct: 476 AANP 479
>UNIPROTKB|G4N5A5 [details] [associations]
symbol:MGG_16887 "Uncharacterized protein" species:242507
"Magnaporthe oryzae 70-15" [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CM001233 GO:GO:0003723
RefSeq:XP_003712769.1 ProteinModelPortal:G4N5A5
EnsemblFungi:MGG_16887T0 GeneID:12985187 KEGG:mgr:MGG_16887
Uniprot:G4N5A5
Length = 370
Score = 108 (43.1 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 29/91 (31%), Positives = 46/91 (50%)
Query: 338 TERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYED-- 395
T E+G+ + T I +P+ +GC+IGR G+ ISE+R + A I ++ K +++
Sbjct: 279 THDENGEEIQTQNISIPADMVGCIIGRAGSKISEIRKTSGARI------SIAKAPHDETG 332
Query: 396 EEMVQITGSLDVASSALSQVTLRLRANTFER 426
E M I GS +AL + L A R
Sbjct: 333 ERMFTIMGSAKANETALFLLYENLEAEKMRR 363
Score = 88 (36.0 bits), Expect = 8.5e-08, Sum P(2) = 8.5e-08
Identities = 25/84 (29%), Positives = 43/84 (51%)
Query: 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
D+E+ + L TVR +V + + G +IGKGG+ + ++R ET + + K + D
Sbjct: 38 DEEYAQAQL-TVRAIVSSKEAGVIIGKGGKNVADLRDETGVKAGVSK-----VVQGVHDR 91
Query: 192 LLQVAGEPAVVRKALVQIASRLHE 215
+L + G + KA +A L E
Sbjct: 92 VLTITGGCEGISKAYAVVARALLE 115
Score = 84 (34.6 bits), Expect = 2.2e-07, Sum P(2) = 2.2e-07
Identities = 45/195 (23%), Positives = 87/195 (44%)
Query: 69 LRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAED 128
LR ET +S+ V G +R++TI EG +S A + V R + E
Sbjct: 71 LRDETGVKAGVSKVVQGVHDRVLTITGGCEG----------ISKA----YAVVARALLEG 116
Query: 129 SLADDEFGELT---LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
+ + G ++ +++L+ +Q+G +IG+ G I++I+ + ++ + + E LP
Sbjct: 117 APSMGMGGVVSNNGTHPIKLLISHNQMGTIIGRQGLKIKHIQDVSGVRM-VAQKEMLPQ- 174
Query: 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXXXXXXXNIYQSSGVYLSAPLVG 245
S + +++V G P +++A+ +I L ++ Q +G
Sbjct: 175 --STERVVEVQGTPEGIQRAVWEICKCLIDDWQRGTGTVLYNPVVRTQPAGATQMGSSGA 232
Query: 246 SYGNYSARRDEASAR 260
YG S R D +S+R
Sbjct: 233 GYGT-SNRGDYSSSR 246
>ZFIN|ZDB-GENE-040426-2122 [details] [associations]
symbol:zgc:65870 "zgc:65870" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-040426-2122
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CU856621
EMBL:AL954840 EMBL:CABZ01011786 EMBL:CABZ01011787 EMBL:CABZ01011788
EMBL:CABZ01011789 EMBL:CABZ01011790 EMBL:CU462880 EMBL:CU469461
IPI:IPI01016643 Ensembl:ENSDART00000137945 Bgee:F1Q8M8
Uniprot:F1Q8M8
Length = 464
Score = 121 (47.7 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 41/150 (27%), Positives = 75/150 (50%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+TI ++E +F ++ L +VA
Sbjct: 51 RIREESSARINISEG--SCPERIITITGATEC--VFRAFTMITIKLEEDLAA----LVAN 102
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
++ +T+R+++PA Q G +IGKGG I+ IR +T AQ+++ D L
Sbjct: 103 GTVTSKP-----PVTLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQVAGD----LLPN 153
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G + + + I + + E+P
Sbjct: 154 STERGVTISGSQDAIIQCVKLICTVILESP 183
Score = 97 (39.2 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 26/96 (27%), Positives = 47/96 (48%)
Query: 121 HDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
H R+ E D G +T+R+L+ ++G +IGK G+ ++ IR E+ A+I I +
Sbjct: 9 HVRMNCEQDFGDG--GMNVTLTLRLLMHGKEVGSIIGKKGETVKRIREESSARINISEGS 66
Query: 181 HLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216
C + ++ + G V +A I +L E+
Sbjct: 67 ----CP---ERIITITGATECVFRAFTMITIKLEED 95
Score = 76 (31.8 bits), Expect = 1.1e-07, Sum P(2) = 1.1e-07
Identities = 16/42 (38%), Positives = 25/42 (59%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRI 382
ES + +L+P+ IG +IGR G I+E+R + A I+I
Sbjct: 274 ESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKI 315
Score = 42 (19.8 bits), Expect = 0.00032, Sum P(2) = 0.00032
Identities = 13/44 (29%), Positives = 18/44 (40%)
Query: 256 EASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDS 299
E+S++ S L+ P RQ SGA IK+ S
Sbjct: 274 ESSSQTASQELLIPNDLIGSIIGRQGTKINEIRQVSGAQIKIGS 317
Score = 40 (19.1 bits), Expect = 3.0e-05, Sum P(3) = 3.0e-05
Identities = 10/35 (28%), Positives = 16/35 (45%)
Query: 263 SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKV 297
+LRLV PA R+++GA ++V
Sbjct: 112 TLRLVIPASQCGSLIGKGGSKIKEIREKTGAQVQV 146
>UNIPROTKB|G3X7R5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:DAAA02052552 EMBL:DAAA02052553
Ensembl:ENSBTAT00000044049 Uniprot:G3X7R5
Length = 507
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 229
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 230 NRKAVELIIQKIQEDP 245
Score = 91 (37.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 394 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 446
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 447 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 499
Query: 431 AAHP 434
AA+P
Sbjct: 500 AANP 503
Score = 81 (33.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
+++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 89
Score = 55 (24.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDE 88
T++ G ED Y + L P QL+ ET + I++S++ PG E
Sbjct: 39 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 97
Query: 89 RIVTIYSSSEGTN 101
R+ I + E N
Sbjct: 98 RVCLIQGTVEALN 110
>UNIPROTKB|J9NXS6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048 CTD:4857
KO:K14944 OMA:FRQNNTA EMBL:AAEX03005630 EMBL:AAEX03005631
RefSeq:XP_547754.1 Ensembl:ENSCAFT00000044255 GeneID:490632
KEGG:cfa:490632 Uniprot:J9NXS6
Length = 507
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 229
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 230 NRKAVELIIQKIQEDP 245
Score = 91 (37.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 394 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 446
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 447 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 499
Query: 431 AAHP 434
AA+P
Sbjct: 500 AANP 503
Score = 81 (33.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
+++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 89
Score = 55 (24.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDE 88
T++ G ED Y + L P QL+ ET + I++S++ PG E
Sbjct: 39 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 97
Query: 89 RIVTIYSSSEGTN 101
R+ I + E N
Sbjct: 98 RVCLIQGTVEALN 110
>MGI|MGI:104297 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1"
species:10090 "Mus musculus" [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=IC]
[GO:0007399 "nervous system development" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 MGI:MGI:104297 GO:GO:0005634 GO:GO:0003729
GO:GO:0000398 GeneTree:ENSGT00650000093048 CTD:4857
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944
OMA:FRQNNTA ChiTaRS:NOVA1 EMBL:AC108802 EMBL:AC156636 EMBL:AF232828
EMBL:AK047565 IPI:IPI00659424 RefSeq:NP_067336.1 UniGene:Mm.247195
ProteinModelPortal:Q9JKN6 SMR:Q9JKN6 PhosphoSite:Q9JKN6
PaxDb:Q9JKN6 PRIDE:Q9JKN6 Ensembl:ENSMUST00000021438 GeneID:664883
KEGG:mmu:664883 UCSC:uc007nmd.2 InParanoid:Q9JKN6 NextBio:426120
Bgee:Q9JKN6 CleanEx:MM_NOVA1 Genevestigator:Q9JKN6
GermOnline:ENSMUSG00000021047 Uniprot:Q9JKN6
Length = 507
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 229
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 230 NRKAVELIIQKIQEDP 245
Score = 91 (37.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 394 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 446
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 447 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 499
Query: 431 AAHP 434
AA+P
Sbjct: 500 AANP 503
Score = 81 (33.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
+++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 89
Score = 55 (24.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDE 88
T++ G ED Y + L P QL+ ET + I++S++ PG E
Sbjct: 39 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 97
Query: 89 RIVTIYSSSEGTN 101
R+ I + E N
Sbjct: 98 RVCLIQGTIEALN 110
>UNIPROTKB|D4AAF8 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003729 GO:GO:0000398 EMBL:CH473947
GeneTree:ENSGT00650000093048 CTD:4857 KO:K14944 UniGene:Rn.232418
IPI:IPI00556974 RefSeq:XP_001075031.1 RefSeq:XP_234098.2 SMR:D4AAF8
Ensembl:ENSRNOT00000050372 GeneID:298992 KEGG:rno:298992
NextBio:644625 Uniprot:D4AAF8
Length = 507
Score = 93 (37.8 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 174 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 229
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 230 NRKAVELIIQKIQEDP 245
Score = 91 (37.1 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 394 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 446
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 447 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 499
Query: 431 AAHP 434
AA+P
Sbjct: 500 AANP 503
Score = 81 (33.6 bits), Expect = 8.0e-05, Sum P(2) = 8.0e-05
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
+++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 89
Score = 55 (24.4 bits), Expect = 1.2e-07, Sum P(3) = 1.2e-07
Identities = 20/73 (27%), Positives = 31/73 (42%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDE 88
T++ G ED Y + L P QL+ ET + I++S++ PG E
Sbjct: 39 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 97
Query: 89 RIVTIYSSSEGTN 101
R+ I + E N
Sbjct: 98 RVCLIQGTIEALN 110
>UNIPROTKB|F8VXH9 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01022190
ProteinModelPortal:F8VXH9 SMR:F8VXH9 Ensembl:ENST00000550520
ArrayExpress:F8VXH9 Bgee:F8VXH9 Uniprot:F8VXH9
Length = 160
Score = 127 (49.8 bits), Expect = 2.1e-07, P = 2.1e-07
Identities = 40/142 (28%), Positives = 70/142 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 30 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 76
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 77 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 132
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 133 STERAITIAGIPQSIIECVKQI 154
Score = 106 (42.4 bits), Expect = 0.00063, P = 0.00063
Identities = 32/116 (27%), Positives = 51/116 (43%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 32 REESGARINISEGNCPERIITLAGPTNAIFK-AFAMIIDKLEEDISSSMTNSTAASRPPV 90
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG 403
T R++VP++Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 91 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAG 142
>ZFIN|ZDB-GENE-060526-113 [details] [associations]
symbol:nova1 "neuro-oncological ventral antigen 1"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-060526-113 GO:GO:0003723 EMBL:BX005407
GeneTree:ENSGT00650000093048 CTD:4857 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 KO:K14944 OMA:FRQNNTA
EMBL:BC171495 EMBL:BC171499 IPI:IPI00487894 RefSeq:NP_001038254.1
UniGene:Dr.103261 SMR:Q1LYC7 Ensembl:ENSDART00000097684
GeneID:555590 KEGG:dre:555590 InParanoid:Q1LYC7 OrthoDB:EOG40ZQZR
NextBio:20881056 Uniprot:Q1LYC7
Length = 495
Score = 111 (44.1 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 43/191 (22%), Positives = 84/191 (43%)
Query: 34 TEQRGIGSEDTVY-RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDER 89
T++ G E + + L P QL+ ET + I++S++ PG ER
Sbjct: 46 TKRSNTGEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTER 105
Query: 90 IVTIYSSSEGTN-LFEDSGEFVSPAQDALFRVHD-RIVAEDSLADDEFGELTLITVRMLV 147
+ I + E N + E V + + I+ + + + + +++V
Sbjct: 106 VCLIQGTVEALNGVHNFIAEKVREMPQSSQKTEPVSILQPQTTVNPD----RIKQAKLIV 161
Query: 148 PADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVRKAL 206
P G +IGKGG ++ + ++ A +++ K E + L + ++ V+GEP RKA+
Sbjct: 162 PNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPEGINLQ----ERVVTVSGEPEQNRKAV 217
Query: 207 VQIASRLHENP 217
I ++ E+P
Sbjct: 218 EIIVQKIQEDP 228
Score = 84 (34.6 bits), Expect = 2.4e-07, Sum P(2) = 2.4e-07
Identities = 35/117 (29%), Positives = 55/117 (47%)
Query: 319 DPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRA 378
+PS + A+ L +EK E G V+ I VP +G ++G+GG + E + T A
Sbjct: 388 NPSSPLVASSLLG---TEKLA-EGGKEVV--EIAVPENLVGAILGKGGKTLVEYQELTGA 441
Query: 379 SIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHP 434
I+I E +P V ITGS +A ++ R+ T+E +G A +P
Sbjct: 442 RIQISKKGEFIPGTR---NRKVTITGSPAATQAAQYLISQRI---TYE-QGVRATNP 491
>ASPGD|ASPL0000075803 [details] [associations]
symbol:AN4546 species:162425 "Emericella nidulans"
[GO:0005829 "cytosol" evidence=IEA] [GO:0003729 "mRNA binding"
evidence=IEA] [GO:0043409 "negative regulation of MAPK cascade"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:BN001303 EMBL:AACD01000078
OrthoDB:EOG4Z65XM eggNOG:NOG315872 HOGENOM:HOG000184255
RefSeq:XP_662150.1 ProteinModelPortal:Q5B4I4
EnsemblFungi:CADANIAT00005892 GeneID:2872347 KEGG:ani:AN4546.2
OMA:AQANEKA Uniprot:Q5B4I4
Length = 542
Score = 104 (41.7 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 28/88 (31%), Positives = 44/88 (50%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYED--EEM 398
E G+ + T I +P+ +GC+IGRGG I+E+R ++ A I ++ K +++ E M
Sbjct: 456 EDGEEIQTQNISIPADMVGCIIGRGGTKITEIRRSSGARI------SIAKAPHDETGERM 509
Query: 399 VQITGSLDVASSALSQVTLRLRANTFER 426
I GS AL + L A R
Sbjct: 510 FTIMGSAQANEKALYLLYENLEAEKTRR 537
Score = 92 (37.4 bits), Expect = 2.8e-07, Sum P(2) = 2.8e-07
Identities = 34/145 (23%), Positives = 69/145 (47%)
Query: 69 LRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAED 128
LR ET +S+ VPG +R++T+ + GT + + A+ L +
Sbjct: 252 LRDETGVKAGVSKVVPGVHDRVLTVTGALSGT-----ARAYALVAKGLLEGAPQ--MGMG 304
Query: 129 SLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALS 188
+ + +R+L+ +Q+G +IG+ G I++I+ + ++ + + E LP S
Sbjct: 305 GIVSNNGTH----PIRLLISHNQMGTIIGRQGLKIKHIQDASGVRM-VAQKEMLPQ---S 356
Query: 189 FDELLQVAGEPAVVRKALVQIASRL 213
+ +++V G P + KA+ +I L
Sbjct: 357 TERIVEVQGTPEGIEKAIWEIGKCL 381
Score = 76 (31.8 bits), Expect = 1.2e-05, Sum P(2) = 1.2e-05
Identities = 22/84 (26%), Positives = 45/84 (53%)
Query: 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
++E+ + +++T+R +V + + G +IGK G+ + ++R ET + + K +P D
Sbjct: 219 EEEYAQ-SMLTLRAIVSSKEAGVIIGKAGKNVADLRDETGVKAGVSKV--VPGV---HDR 272
Query: 192 LLQVAGEPAVVRKALVQIASRLHE 215
+L V G + +A +A L E
Sbjct: 273 VLTVTGALSGTARAYALVAKGLLE 296
>UNIPROTKB|E2RA50 [details] [associations]
symbol:E2RA50 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000002165 NextBio:20851993 Uniprot:E2RA50
Length = 439
Score = 103 (41.3 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 360 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 414
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 415 GTQDQIQNA 423
Score = 89 (36.4 bits), Expect = 4.0e-07, Sum P(2) = 4.0e-07
Identities = 33/112 (29%), Positives = 54/112 (48%)
Query: 104 EDSGEFVS-PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
E +GEF PA+D + + + S DE EL R+L+ + G VIGKGG+
Sbjct: 14 ETNGEFGKRPAED----MEEEQAFKRSRNTDEMVEL-----RILLQSKNAGAVIGKGGKN 64
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLH 214
I+ +RT+ A + + D P LS ++ GE +++K + + H
Sbjct: 65 IKALRTDYNASVSV-PDSSGPERILSISADIETIGE--ILKKIIPTLEEYQH 113
Score = 64 (27.6 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ T+ I++ ++ C S D ++ + G+P V
Sbjct: 123 LRLLIHQSLAGGIIGVKGAKIKKFGGNTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 178
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 179 VECIKIILDLISESP 193
>UNIPROTKB|H9L011 [details] [associations]
symbol:LOC426023 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
EMBL:AADN02056329 Ensembl:ENSGALT00000021744 OMA:RALENKI
Uniprot:H9L011
Length = 195
Score = 134 (52.2 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 42/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + E+P
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP 170
>MGI|MGI:1890359 [details] [associations]
symbol:Igf2bp3 "insulin-like growth factor 2 mRNA binding
protein 3" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006417
"regulation of translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR
binding" evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890359 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HSSP:Q9Y6M1 HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OrthoDB:EOG405S0T
CTD:10643 OMA:EAQDTKF ChiTaRS:Igf2bp3 EMBL:AK088465 EMBL:AK011689
EMBL:AK147140 EMBL:BC045138 EMBL:BC049082 IPI:IPI00331315
RefSeq:NP_076159.3 UniGene:Mm.281018 ProteinModelPortal:Q9CPN8
SMR:Q9CPN8 STRING:Q9CPN8 PhosphoSite:Q9CPN8 PaxDb:Q9CPN8
PRIDE:Q9CPN8 Ensembl:ENSMUST00000031838 GeneID:140488
KEGG:mmu:140488 UCSC:uc009bwi.2 InParanoid:Q9CPN8 NextBio:369800
Bgee:Q9CPN8 Genevestigator:Q9CPN8 Uniprot:Q9CPN8
Length = 579
Score = 147 (56.8 bits), Expect = 5.5e-07, P = 5.5e-07
Identities = 89/428 (20%), Positives = 175/428 (40%)
Query: 23 GGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET 82
G S++ +PG ++Q+ D R L P + + +T+S I +
Sbjct: 178 GSSRQASPGSVSKQKPC---DLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRK 234
Query: 83 V-PGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLI 141
G E+ +TI S+ EGT+ + + L +H A+D +E I
Sbjct: 235 ENTGAAEKSITILSTPEGTS---------AACKSILEIMHKE--AQDIKFTEE------I 277
Query: 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAV 201
+++L + +G +IGK G+ ++ I +T +I I + L L + + + V G
Sbjct: 278 PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL--YNPERTITVKGSVET 335
Query: 202 VRKALVQIASRL---HENPXXXXXXXXXXXXNIYQSS-GVY-----LSAPLVGSYGNYSA 252
KA +I ++ +EN + ++ G++ + P G +
Sbjct: 336 CAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSTLTP 395
Query: 253 RRDEASAREF-SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIFI 311
+ E ++ L PA + +GASIK+ + AE D + +
Sbjct: 396 PYPQFEQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI--APAEAPDAKVRM 453
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-ITTRILVPSAQIGCLIGRGGAIIS 370
P A R+ + E+ + V + I VPS G +IG+GG ++
Sbjct: 454 VI--ITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTVN 511
Query: 371 EMRSATRASIRILTNENVPKVAYEDEEMVQITG---SLDVASSALSQVTLRLRANTFERE 427
E++S + A + ++ + P D+ +V+ITG + VA + ++ +++ + +++
Sbjct: 512 ELQSLSSAEV-VVPRDQTPDE--NDQVVVKITGHFYACQVAQRKIQEILTQVKQH--QQQ 566
Query: 428 GALAAHPP 435
AL + PP
Sbjct: 567 KALQSGPP 574
>UNIPROTKB|I3LQS0 [details] [associations]
symbol:HNRNPK "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0072369 "regulation of lipid transport by positive
regulation of transcription from RNA polymerase II promoter"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA] [GO:0045716 "positive regulation of
low-density lipoprotein particle receptor biosynthetic process"
evidence=IEA] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IEA] [GO:0001077 "RNA polymerase II
core promoter proximal region sequence-specific DNA binding
transcription factor activity involved in positive regulation of
transcription" evidence=IEA] [GO:0000978 "RNA polymerase II core
promoter proximal region sequence-specific DNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GO:GO:0000978 GO:GO:0001077 GO:GO:0000790
GO:GO:0048260 GO:GO:0071013 GO:GO:0045716 GO:GO:0010988
GeneTree:ENSGT00550000074311 OMA:KALRTDX GO:GO:0072369
InterPro:IPR012987 Pfam:PF08067 EMBL:FP312814
Ensembl:ENSSSCT00000025854 Uniprot:I3LQS0
Length = 444
Score = 103 (41.3 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 365 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 419
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 420 GTQDQIQNA 428
Score = 87 (35.7 bits), Expect = 6.7e-07, Sum P(2) = 6.7e-07
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 104 EDSGEFVS-PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
E +GEF PA+D + + + S DE EL R+L+ + G VIGKGG+
Sbjct: 17 ETNGEFGKRPAED----MEEEQAFKRSRNTDEMVEL-----RILLQSKNAGAVIGKGGKN 67
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKAL 206
I+ +RT+ A + + D P LS ++ GE +++K +
Sbjct: 68 IKALRTDYNASVSV-PDSSGPERILSISADIETIGE--ILKKII 108
Score = 80 (33.2 bits), Expect = 0.00020, Sum P(2) = 0.00020
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 309 IFISTKEFFEDPSPTITAALRLQP---RCSEKTERESGDPVITTRILVPSAQIGCLIGRG 365
I + +E + PSPT T+ L L+ C + D R+L+ + G +IG
Sbjct: 107 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 166
Query: 366 GAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
GA I E+R T+ +I++ E P+ + +V I G D
Sbjct: 167 GAKIKELRENTQTTIKLF-QECCPQ---STDRVVLIGGKPD 203
Score = 75 (31.5 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 150 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPQSTDRVVLIGGKPDRV 205
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 206 VECIKIILDLISESP 220
>UNIPROTKB|J9P8W9 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643
OMA:EAQDTKF EMBL:AAEX03009368 EMBL:AAEX03009369 EMBL:AAEX03009370
RefSeq:XP_539474.2 Ensembl:ENSCAFT00000046043 GeneID:482357
KEGG:cfa:482357 Uniprot:J9P8W9
Length = 579
Score = 146 (56.5 bits), Expect = 7.1e-07, P = 7.1e-07
Identities = 98/451 (21%), Positives = 182/451 (40%)
Query: 1 MAGQSNINYGKRTHFQSDAATNGGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXX 60
MA Q N + R + G S++ +PG ++Q+ D R L P +
Sbjct: 158 MAAQQNPSQQPRG--RRGFGQRGSSRQGSPGSVSKQKPC---DLPLRLLVPTQFVGAIIG 212
Query: 61 XXXXXXXQLRSETKSNIRISETV-PGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFR 119
+ +T+S I + G E+ +TI S+ EGT+ + + L
Sbjct: 213 KEGATIRNITKQTQSKIDVHRKENAGAAEKSITILSTPEGTS---------AACKSILEI 263
Query: 120 VHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKD 179
+H A+D +E I +++L + +G +IGK G+ ++ I +T +I I
Sbjct: 264 MHKE--AQDIKFTEE------IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPL 315
Query: 180 EHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXXXXXXXNI--YQSSGV 237
+ L L + + + V G KA +I ++ E+ I + +
Sbjct: 316 QELTL--YNPERTITVKGNVETCAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNAL 373
Query: 238 YLSAPLVG----SYGNYSARRD-----EASAREFSLRLVCPAXXXXXXXXXXXXXXXXXR 288
L P G + G SA E S E ++ L PA
Sbjct: 374 GLFPPTSGMPPPTSGPPSAMTPPYPQFEQSETE-TVHLFIPALSVGAIIGKQGQHIKQLS 432
Query: 289 QESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-I 347
+ +GASIK+ + AE D + + P A R+ + E+ + V +
Sbjct: 433 RFAGASIKI--APAEAPDAKVRMVI--ITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKL 488
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG---S 404
I VPS G +IG+GG ++E+++ + A + ++ + P D+ +V+ITG +
Sbjct: 489 EAHIRVPSFAAGRVIGKGGKTVNELQNLSSAEV-VVPRDQTPDE--NDQVVVKITGHFYA 545
Query: 405 LDVASSALSQVTLRLRANTFEREGALAAHPP 435
VA + ++ +++ + +++ AL + PP
Sbjct: 546 CQVAQRKIQEILTQVKQH--QQQKALQSGPP 574
>UNIPROTKB|P61978 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0019048 "virus-host interaction" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IC;TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0007165 "signal transduction" evidence=TAS] [GO:0005654
"nucleoplasm" evidence=TAS] [GO:0008380 "RNA splicing"
evidence=TAS] [GO:0010467 "gene expression" evidence=TAS]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IMP] [GO:0072369
"regulation of lipid transport by positive regulation of
transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0048260 "positive regulation of receptor-mediated endocytosis"
evidence=IMP] [GO:0010988 "regulation of low-density lipoprotein
particle clearance" evidence=IMP] [GO:0045944 "positive regulation
of transcription from RNA polymerase II promoter" evidence=IMP]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IMP] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IMP] [GO:0003697
"single-stranded DNA binding" evidence=TAS] [GO:0000790 "nuclear
chromatin" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005730 "nucleolus" evidence=IDA] Reactome:REACT_71
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005737 GO:GO:0019048 GO:GO:0007165
GO:GO:0005654 Reactome:REACT_1675 GO:GO:0003723 GO:GO:0000978
GO:GO:0001077 GO:GO:0000790 GO:GO:0003697 EMBL:CH471089
GO:GO:0048260 GO:GO:0000398 GO:GO:0071013 EMBL:AL354733
GO:GO:0045716 GO:GO:0010988 CTD:3190 eggNOG:NOG285495
HOVERGEN:HBG051916 KO:K12886 OMA:KALRTDX OrthoDB:EOG49KFRD
GO:GO:0072369 InterPro:IPR012987 Pfam:PF08067 EMBL:S74678
EMBL:X72727 EMBL:AB209562 EMBL:BC000355 EMBL:BC014980
IPI:IPI00216049 IPI:IPI00216746 IPI:IPI00807545 PIR:S43363
RefSeq:NP_002131.2 RefSeq:NP_112552.1 RefSeq:NP_112553.1
UniGene:Hs.522257 PDB:1J5K PDB:1KHM PDB:1ZZI PDB:1ZZJ PDB:1ZZK
PDBsum:1J5K PDBsum:1KHM PDBsum:1ZZI PDBsum:1ZZJ PDBsum:1ZZK
ProteinModelPortal:P61978 SMR:P61978 DIP:DIP-31805N IntAct:P61978
MINT:MINT-225422 STRING:P61978 PhosphoSite:P61978 DMDM:48429103
SWISS-2DPAGE:P61978 PaxDb:P61978 PRIDE:P61978 DNASU:3190
Ensembl:ENST00000351839 Ensembl:ENST00000360384
Ensembl:ENST00000376263 Ensembl:ENST00000376264
Ensembl:ENST00000376268 Ensembl:ENST00000376281 GeneID:3190
KEGG:hsa:3190 UCSC:uc004ang.4 UCSC:uc004anh.4 GeneCards:GC09M086582
HGNC:HGNC:5044 HPA:CAB004435 HPA:CAB016225 HPA:HPA007644 MIM:600712
neXtProt:NX_P61978 PharmGKB:PA162391350 ChEMBL:CHEMBL3469
ChiTaRS:HNRNPK EvolutionaryTrace:P61978 GenomeRNAi:3190
NextBio:12686 PMAP-CutDB:P61978 ArrayExpress:P61978 Bgee:P61978
CleanEx:HS_HNRNPK Genevestigator:P61978 GermOnline:ENSG00000165119
Uniprot:P61978
Length = 463
Score = 103 (41.3 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 438
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 439 GTQDQIQNA 447
Score = 87 (35.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 104 EDSGEFVS-PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
E +GEF PA+D + + + S DE EL R+L+ + G VIGKGG+
Sbjct: 14 ETNGEFGKRPAED----MEEEQAFKRSRNTDEMVEL-----RILLQSKNAGAVIGKGGKN 64
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKAL 206
I+ +RT+ A + + D P LS ++ GE +++K +
Sbjct: 65 IKALRTDYNASVSV-PDSSGPERILSISADIETIGE--ILKKII 105
Score = 81 (33.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 309 IFISTKEFFEDPSPTITAALRLQP---RCSEKTERESGDPVITTRILVPSAQIGCLIGRG 365
I + +E + PSPT T+ L L+ C + D R+L+ + G +IG
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 366 GAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
GA I E+R T+ +I++ E P + + +V I G D
Sbjct: 164 GAKIKELRENTQTTIKLF-QECCP---HSTDRVVLIGGKPD 200
Score = 74 (31.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 202
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 203 VECIKIILDLISESP 217
>MGI|MGI:99894 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10090 "Mus musculus" [GO:0000790 "nuclear chromatin"
evidence=ISO] [GO:0000978 "RNA polymerase II core promoter proximal
region sequence-specific DNA binding" evidence=ISO] [GO:0001077
"RNA polymerase II core promoter proximal region sequence-specific
DNA binding transcription factor activity involved in positive
regulation of transcription" evidence=ISO] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003677 "DNA binding" evidence=IEA]
[GO:0003697 "single-stranded DNA binding" evidence=ISO] [GO:0003723
"RNA binding" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0005634 "nucleus" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0006351 "transcription, DNA-dependent"
evidence=IEA] [GO:0006355 "regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA] [GO:0010988
"regulation of low-density lipoprotein particle clearance"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0042981 "regulation of apoptotic process" evidence=IMP]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=ISO] [GO:0045944
"positive regulation of transcription from RNA polymerase II
promoter" evidence=ISO] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=ISO] [GO:0071013 "catalytic
step 2 spliceosome" evidence=ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=ISO] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
MGI:MGI:99894 GO:GO:0005737 GO:GO:0005654 GO:GO:0006355
GO:GO:0008380 GO:GO:0006397 GO:GO:0006351 GO:GO:0005681
GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOVERGEN:HBG051916 KO:K12886
OMA:KALRTDX InterPro:IPR012987 Pfam:PF08067 EMBL:L31961
EMBL:AK011428 EMBL:AK051313 EMBL:AK078777 EMBL:AK088462
EMBL:BC006694 IPI:IPI00224575 IPI:IPI00890005 IPI:IPI00990152
RefSeq:NP_079555.1 UniGene:Mm.142872 ProteinModelPortal:P61979
SMR:P61979 IntAct:P61979 STRING:P61979 PhosphoSite:P61979
REPRODUCTION-2DPAGE:IPI00223253 REPRODUCTION-2DPAGE:P61979
PaxDb:P61979 PRIDE:P61979 Ensembl:ENSMUST00000043269
Ensembl:ENSMUST00000116403 Ensembl:ENSMUST00000176207 GeneID:15387
KEGG:mmu:15387 UCSC:uc007qtw.1 UCSC:uc007qty.1 NextBio:288062
Bgee:P61979 Genevestigator:P61979 GermOnline:ENSMUSG00000063902
Uniprot:P61979
Length = 463
Score = 103 (41.3 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 438
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 439 GTQDQIQNA 447
Score = 87 (35.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 104 EDSGEFVS-PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
E +GEF PA+D + + + S DE EL R+L+ + G VIGKGG+
Sbjct: 14 ETNGEFGKRPAED----MEEEQAFKRSRNTDEMVEL-----RILLQSKNAGAVIGKGGKN 64
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKAL 206
I+ +RT+ A + + D P LS ++ GE +++K +
Sbjct: 65 IKALRTDYNASVSV-PDSSGPERILSISADIETIGE--ILKKII 105
Score = 81 (33.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 309 IFISTKEFFEDPSPTITAALRLQP---RCSEKTERESGDPVITTRILVPSAQIGCLIGRG 365
I + +E + PSPT T+ L L+ C + D R+L+ + G +IG
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 366 GAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
GA I E+R T+ +I++ E P + + +V I G D
Sbjct: 164 GAKIKELRENTQTTIKLF-QECCP---HSTDRVVLIGGKPD 200
Score = 74 (31.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 202
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 203 VECIKIILDLISESP 217
>RGD|71058 [details] [associations]
symbol:Hnrnpk "heterogeneous nuclear ribonucleoprotein K"
species:10116 "Rattus norvegicus" [GO:0000790 "nuclear chromatin"
evidence=IEA;ISO] [GO:0000978 "RNA polymerase II core promoter
proximal region sequence-specific DNA binding" evidence=IEA;ISO]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity involved
in positive regulation of transcription" evidence=IEA;ISO]
[GO:0003697 "single-stranded DNA binding" evidence=IDA] [GO:0003723
"RNA binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005681 "spliceosomal
complex" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA] [GO:0006355
"regulation of transcription, DNA-dependent" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0010988 "regulation of low-density
lipoprotein particle clearance" evidence=IEA;ISO] [GO:0042981
"regulation of apoptotic process" evidence=ISO] [GO:0045716
"positive regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA;ISO] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISO] [GO:0048260 "positive regulation of receptor-mediated
endocytosis" evidence=IEA;ISO] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA;ISO] [GO:0072369 "regulation of lipid
transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA;ISO] [GO:0005730 "nucleolus"
evidence=ISO] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 RGD:71058 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0006397 GO:GO:0006351
GO:GO:0005681 GO:GO:0003723 GO:GO:0003697 CTD:3190 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 HOVERGEN:HBG051916
KO:K12886 InterPro:IPR012987 Pfam:PF08067 EMBL:D17711
IPI:IPI00780608 PIR:S41495 RefSeq:NP_476482.1 UniGene:Rn.11854
ProteinModelPortal:P61980 SMR:P61980 IntAct:P61980 MINT:MINT-1505757
STRING:P61980 PhosphoSite:P61980 World-2DPAGE:0004:P61980
PRIDE:P61980 Ensembl:ENSRNOT00000025916 GeneID:117282
KEGG:rno:117282 UCSC:RGD:71058 InParanoid:P61980 NextBio:620239
ArrayExpress:P61980 Genevestigator:P61980
GermOnline:ENSRNOG00000019113 Uniprot:P61980
Length = 463
Score = 103 (41.3 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 438
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 439 GTQDQIQNA 447
Score = 87 (35.7 bits), Expect = 7.5e-07, Sum P(2) = 7.5e-07
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 104 EDSGEFVS-PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
E +GEF PA+D + + + S DE EL R+L+ + G VIGKGG+
Sbjct: 14 ETNGEFGKRPAED----MEEEQAFKRSRNTDEMVEL-----RILLQSKNAGAVIGKGGKN 64
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKAL 206
I+ +RT+ A + + D P LS ++ GE +++K +
Sbjct: 65 IKALRTDYNASVSV-PDSSGPERILSISADIETIGE--ILKKII 105
Score = 81 (33.6 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 309 IFISTKEFFEDPSPTITAALRLQP---RCSEKTERESGDPVITTRILVPSAQIGCLIGRG 365
I + +E + PSPT T+ L L+ C + D R+L+ + G +IG
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 366 GAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
GA I E+R T+ +I++ E P + + +V I G D
Sbjct: 164 GAKIKELRENTQTTIKLF-QECCP---HSTDRVVLIGGKPD 200
Score = 74 (31.1 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 202
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 203 VECIKIILDLISESP 217
>UNIPROTKB|Q3T0D0 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9913 "Bos taurus" [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0072369 "regulation of
lipid transport by positive regulation of transcription from RNA
polymerase II promoter" evidence=IEA] [GO:0071013 "catalytic step 2
spliceosome" evidence=IEA] [GO:0048260 "positive regulation of
receptor-mediated endocytosis" evidence=IEA] [GO:0045716 "positive
regulation of low-density lipoprotein particle receptor
biosynthetic process" evidence=IEA] [GO:0010988 "regulation of
low-density lipoprotein particle clearance" evidence=IEA]
[GO:0001077 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding transcription factor activity
involved in positive regulation of transcription" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0000790 "nuclear
chromatin" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0006397 "mRNA processing" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0005654 GO:GO:0008380 GO:GO:0006397 GO:GO:0003723
GO:GO:0000978 GO:GO:0001077 GO:GO:0000790 GO:GO:0048260
GO:GO:0071013 GO:GO:0045716 GO:GO:0010988 EMBL:BC102450
IPI:IPI00696554 RefSeq:NP_001029734.1 UniGene:Bt.47688
ProteinModelPortal:Q3T0D0 SMR:Q3T0D0 STRING:Q3T0D0 PRIDE:Q3T0D0
Ensembl:ENSBTAT00000028162 GeneID:528135 KEGG:bta:528135 CTD:3190
eggNOG:NOG285495 GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764
HOVERGEN:HBG051916 InParanoid:Q3T0D0 KO:K12886 OMA:KALRTDX
OrthoDB:EOG49KFRD NextBio:20874747 GO:GO:0072369 InterPro:IPR012987
Pfam:PF08067 Uniprot:Q3T0D0
Length = 464
Score = 103 (41.3 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 384 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 438
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 439 GTQDQIQNA 447
Score = 87 (35.7 bits), Expect = 7.6e-07, Sum P(2) = 7.6e-07
Identities = 32/104 (30%), Positives = 52/104 (50%)
Query: 104 EDSGEFVS-PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
E +GEF PA+D + + + S DE EL R+L+ + G VIGKGG+
Sbjct: 14 ETNGEFGKRPAED----MEEEQAFKRSRNTDEMVEL-----RILLQSKNAGAVIGKGGKN 64
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKAL 206
I+ +RT+ A + + D P LS ++ GE +++K +
Sbjct: 65 IKALRTDYNASVSV-PDSSGPERILSISADIETIGE--ILKKII 105
Score = 80 (33.2 bits), Expect = 0.00022, Sum P(2) = 0.00022
Identities = 29/101 (28%), Positives = 47/101 (46%)
Query: 309 IFISTKEFFEDPSPTITAALRLQP---RCSEKTERESGDPVITTRILVPSAQIGCLIGRG 365
I + +E + PSPT T+ L L+ C + D R+L+ + G +IG
Sbjct: 104 IIPTLEEGLQLPSPTATSQLPLESDAVECLNYQHYKGSDFDCELRLLIHQSLAGGIIGVK 163
Query: 366 GAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
GA I E+R T+ +I++ E P+ + +V I G D
Sbjct: 164 GAKIKELRENTQTTIKLF-QECCPQ---STDRVVLIGGKPD 200
Score = 75 (31.5 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 147 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPQSTDRVVLIGGKPDRV 202
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 203 VECIKIILDLISESP 217
>RGD|621345 [details] [associations]
symbol:Nova1 "neuro-oncological ventral antigen 1" species:10116
"Rattus norvegicus" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=ISO] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0005634 "nucleus" evidence=IEA]
[GO:0007399 "nervous system development" evidence=IDA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0005634 GO:GO:0007399 GO:GO:0003723
eggNOG:NOG258094 HOGENOM:HOG000007833 HOVERGEN:HBG082048
EMBL:AY262017 IPI:IPI00331877 UniGene:Rn.232418
ProteinModelPortal:Q80WA4 SMR:Q80WA4 PRIDE:Q80WA4 UCSC:RGD:621345
ArrayExpress:Q80WA4 Genevestigator:Q80WA4 Uniprot:Q80WA4
Length = 474
Score = 110 (43.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 45/192 (23%), Positives = 85/192 (44%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDE 88
T++ G ED Y + L P QL+ ET + I++S++ PG E
Sbjct: 38 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 96
Query: 89 RIVTIYSSSEGTNLFEDS-GEFVSPAQDALFRVHD-RIVAEDSLADDEFGELTLITVRML 146
R+ I + E N E + + + I+ + + + + V+++
Sbjct: 97 RVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPD----RIKQVKII 152
Query: 147 VPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVRKA 205
VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP RKA
Sbjct: 153 VPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQNRKA 208
Query: 206 LVQIASRLHENP 217
+ I ++ E+P
Sbjct: 209 VELIIQKIQEDP 220
Score = 79 (32.9 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 369 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 421
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFER 426
+ T A I+I E VP V ITG+ +A +T R+ T+E+
Sbjct: 422 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYEQ 471
>UNIPROTKB|F1LMZ7 [details] [associations]
symbol:Nova1 "RNA-binding protein Nova-1" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:621345 GO:GO:0003723 IPI:IPI00331877
Ensembl:ENSRNOT00000044527 ArrayExpress:F1LMZ7 Uniprot:F1LMZ7
Length = 474
Score = 110 (43.8 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 45/192 (23%), Positives = 85/192 (44%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET---VPGCDE 88
T++ G ED Y + L P QL+ ET + I++S++ PG E
Sbjct: 38 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTE 96
Query: 89 RIVTIYSSSEGTNLFEDS-GEFVSPAQDALFRVHD-RIVAEDSLADDEFGELTLITVRML 146
R+ I + E N E + + + I+ + + + + V+++
Sbjct: 97 RVCLIQGTIEALNAVHGFIAEKIREMPQNVAKTEPVSILQPQTTVNPD----RIKQVKII 152
Query: 147 VPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAVVRKA 205
VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP RKA
Sbjct: 153 VPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQNRKA 208
Query: 206 LVQIASRLHENP 217
+ I ++ E+P
Sbjct: 209 VELIIQKIQEDP 220
Score = 79 (32.9 bits), Expect = 9.0e-07, Sum P(2) = 9.0e-07
Identities = 34/116 (29%), Positives = 53/116 (45%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 369 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 421
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFER 426
+ T A I+I E VP V ITG+ +A +T R+ T+E+
Sbjct: 422 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYEQ 471
>UNIPROTKB|F8W0G4 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC068889 EMBL:AC023509
HGNC:HGNC:8648 ChiTaRS:PCBP2 IPI:IPI01021465
ProteinModelPortal:F8W0G4 SMR:F8W0G4 PRIDE:F8W0G4
Ensembl:ENST00000551104 ArrayExpress:F8W0G4 Bgee:F8W0G4
Uniprot:F8W0G4
Length = 158
Score = 121 (47.7 bits), Expect = 9.5e-07, P = 9.5e-07
Identities = 38/132 (28%), Positives = 65/132 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEP 199
S + + +AG P
Sbjct: 141 STERAITIAGIP 152
Score = 106 (42.4 bits), Expect = 0.00055, P = 0.00055
Identities = 32/116 (27%), Positives = 51/116 (43%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + + T F+ I L S + P +
Sbjct: 40 REESGARINISEGNCPERIITLAGPTNAIFK-AFAMIIDKLEEDISSSMTNSTAASRPPV 98
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG 403
T R++VP++Q G LIG+GG I E+R +T A +++ + +P E + I G
Sbjct: 99 TLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQV-AGDMLPN---STERAITIAG 150
>UNIPROTKB|P51513 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0003723 "RNA binding" evidence=TAS] [GO:0007268 "synaptic
transmission" evidence=TAS] [GO:0007626 "locomotory behavior"
evidence=TAS] [GO:0008380 "RNA splicing" evidence=TAS]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0005634 GO:GO:0008380 GO:GO:0007268
GO:GO:0003729 GO:GO:0007626 GO:GO:0003723 EMBL:CH471078
GO:GO:0000398 EMBL:U04840 EMBL:AK289639 EMBL:AK291022 EMBL:BC075038
EMBL:BC075039 EMBL:Z70771 IPI:IPI00019244 IPI:IPI00221187
IPI:IPI00221188 IPI:IPI00816603 PIR:I38489 RefSeq:NP_002506.2
RefSeq:NP_006480.2 RefSeq:NP_006482.1 UniGene:Hs.31588 PDB:1DT4
PDB:2ANN PDB:2ANR PDBsum:1DT4 PDBsum:2ANN PDBsum:2ANR
ProteinModelPortal:P51513 SMR:P51513 IntAct:P51513
MINT:MINT-1381951 STRING:P51513 PhosphoSite:P51513 DMDM:1709303
PRIDE:P51513 Ensembl:ENST00000344429 Ensembl:ENST00000539517
GeneID:4857 KEGG:hsa:4857 UCSC:uc001wpy.3 UCSC:uc001wqa.3
UCSC:uc001wqb.3 CTD:4857 GeneCards:GC14M026915 H-InvDB:HIX0037755
HGNC:HGNC:7886 HPA:HPA004155 MIM:602157 neXtProt:NX_P51513
PharmGKB:PA31688 eggNOG:NOG258094 HOGENOM:HOG000007833
HOVERGEN:HBG082048 InParanoid:P51513 KO:K14944 OMA:FRQNNTA
ChiTaRS:NOVA1 EvolutionaryTrace:P51513 GenomeRNAi:4857
NextBio:18710 ArrayExpress:P51513 Bgee:P51513 CleanEx:HS_NOVA1
Genevestigator:P51513 GermOnline:ENSG00000139910 Uniprot:P51513
Length = 510
Score = 92 (37.4 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 22/76 (28%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ + ++ A +++ K + + L + ++ V+GEP
Sbjct: 177 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 232
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 233 NRKAVELIIQKIQEDP 248
Score = 91 (37.1 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 397 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 449
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 450 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 502
Query: 431 AAHP 434
AA+P
Sbjct: 503 AANP 506
Score = 80 (33.2 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 15/36 (41%), Positives = 25/36 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILK 178
+++L+P+ G +IGKGGQ I ++ ET A I++ K
Sbjct: 52 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSK 87
Score = 47 (21.6 bits), Expect = 1.0e-06, Sum P(3) = 1.0e-06
Identities = 20/76 (26%), Positives = 30/76 (39%)
Query: 34 TEQRGIGSEDTVY--RYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET------VPG 85
T++ G ED Y + L P QL+ ET + I++S+ PG
Sbjct: 39 TKRTNTG-EDGQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKLSKSKDFYPG 97
Query: 86 CDERIVTIYSSSEGTN 101
ER+ I + E N
Sbjct: 98 TTERVCLIQGTVEALN 113
>UNIPROTKB|O00425 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005515 "protein binding" evidence=IPI] [GO:0003730 "mRNA
3'-UTR binding" evidence=IDA] [GO:0003723 "RNA binding"
evidence=TAS] [GO:0006412 "translation" evidence=TAS] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0017148 "negative regulation of
translation" evidence=ISS] [GO:0045182 "translation regulator
activity" evidence=ISS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IDA] [GO:0042035
"regulation of cytokine biosynthetic process" evidence=IC]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005829
GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148 GO:GO:0000166
GO:GO:0006412 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 EMBL:AC005082
HOVERGEN:HBG052725 KO:K13197 eggNOG:NOG249985 HOGENOM:HOG000000675
OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF EMBL:U76705 EMBL:U97188
EMBL:BX640800 EMBL:BX648488 EMBL:AC021876 EMBL:AC079780
EMBL:BC065269 IPI:IPI00165467 IPI:IPI00658000 RefSeq:NP_006538.2
UniGene:Hs.700696 PDB:2E44 PDBsum:2E44 ProteinModelPortal:O00425
SMR:O00425 IntAct:O00425 STRING:O00425 PhosphoSite:O00425
PaxDb:O00425 PRIDE:O00425 Ensembl:ENST00000258729 GeneID:10643
KEGG:hsa:10643 UCSC:uc003swf.3 UCSC:uc003swg.3
GeneCards:GC07M023316 HGNC:HGNC:28868 HPA:HPA002037 MIM:608259
neXtProt:NX_O00425 PharmGKB:PA128394576 InParanoid:O00425
PhylomeDB:O00425 ChiTaRS:Igf2bp3 EvolutionaryTrace:O00425
GenomeRNAi:10643 NextBio:40451 ArrayExpress:O00425 Bgee:O00425
CleanEx:HS_IGF2BP3 CleanEx:HS_IMP3 Genevestigator:O00425
Uniprot:O00425
Length = 579
Score = 144 (55.7 bits), Expect = 1.2e-06, P = 1.2e-06
Identities = 93/429 (21%), Positives = 175/429 (40%)
Query: 23 GGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET 82
G S++ +PG ++Q+ D R L P + + +T+S I +
Sbjct: 178 GSSRQGSPGSVSKQKPC---DLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRK 234
Query: 83 V-PGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLI 141
G E+ +TI S+ EGT+ + + L +H A+D +E I
Sbjct: 235 ENAGAAEKSITILSTPEGTS---------AACKSILEIMHKE--AQDIKFTEE------I 277
Query: 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAV 201
+++L + +G +IGK G+ ++ I +T +I I + L L + + + V G
Sbjct: 278 PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL--YNPERTITVKGNVET 335
Query: 202 VRKALVQIASRLHENPXXXXXXXXXXXXNI--YQSSGVYLSAPLVG----SYGNYSARRD 255
KA +I ++ E+ I + + L P G + G SA
Sbjct: 336 CAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAMTP 395
Query: 256 -----EASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIF 310
E S E ++ L PA + +GASIK+ + AE D +
Sbjct: 396 PYPQFEQSETE-TVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI--APAEAPDAKVR 452
Query: 311 ISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-ITTRILVPSAQIGCLIGRGGAII 369
+ P A R+ + E+ + V + I VPS G +IG+GG +
Sbjct: 453 MVI--ITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTV 510
Query: 370 SEMRSATRASIRILTNENVPKVAYEDEEMVQITG---SLDVASSALSQVTLRLRANTFER 426
+E+++ + A + ++ + P D+ +V+ITG + VA + ++ +++ + ++
Sbjct: 511 NELQNLSSAEV-VVPRDQTPDE--NDQVVVKITGHFYACQVAQRKIQEILTQVKQH--QQ 565
Query: 427 EGALAAHPP 435
+ AL + PP
Sbjct: 566 QKALQSGPP 574
>UNIPROTKB|E1C453 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0000790 "nuclear chromatin" evidence=IEA]
[GO:0000978 "RNA polymerase II core promoter proximal region
sequence-specific DNA binding" evidence=IEA] [GO:0001077 "RNA
polymerase II core promoter proximal region sequence-specific DNA
binding transcription factor activity involved in positive
regulation of transcription" evidence=IEA] [GO:0010988 "regulation
of low-density lipoprotein particle clearance" evidence=IEA]
[GO:0045716 "positive regulation of low-density lipoprotein
particle receptor biosynthetic process" evidence=IEA] [GO:0048260
"positive regulation of receptor-mediated endocytosis"
evidence=IEA] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0072369 "regulation of lipid transport by
positive regulation of transcription from RNA polymerase II
promoter" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 KO:K12886 OMA:KALRTDX
InterPro:IPR012987 Pfam:PF08067 EMBL:AADN02064910 EMBL:AADN02064911
IPI:IPI00684854 RefSeq:XP_003643054.1 Ensembl:ENSGALT00000020563
GeneID:427458 KEGG:gga:427458 Uniprot:E1C453
Length = 426
Score = 103 (41.3 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 347 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 401
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 402 GTQDQIQNA 410
Score = 84 (34.6 bits), Expect = 1.2e-06, Sum P(2) = 1.2e-06
Identities = 21/75 (28%), Positives = 40/75 (53%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++ +R+L+ + G VIGKGG+ I+ +RT+ A + + D P LS ++ GE
Sbjct: 39 MVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGPERILSISADIETIGE- 96
Query: 200 AVVRKALVQIASRLH 214
+++K + + H
Sbjct: 97 -ILKKIIPTLEEYQH 110
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 175
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 176 VECIKIILDLISESP 190
>UNIPROTKB|B3KM64 [details] [associations]
symbol:PCBP4 "cDNA FLJ10382 fis, clone NT2RM2002088, highly
similar to Poly(rC)-binding protein 4" species:9606 "Homo sapiens"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HOVERGEN:HBG053520 UniGene:Hs.20930 HGNC:HGNC:8652 EMBL:AK001244
IPI:IPI00788617 SMR:B3KM64 STRING:B3KM64 Ensembl:ENST00000395013
UCSC:uc003dci.2 Uniprot:B3KM64
Length = 243
Score = 98 (39.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 39/109 (35%), Positives = 53/109 (48%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
+ G + LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 76 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 130
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G ++ P LP P S +T
Sbjct: 131 ITGS--PVSIALAQYLITACLETAKSTSGGTPSSAPADLP-APFSPPLT 176
Score = 81 (33.6 bits), Expect = 1.3e-06, Sum P(2) = 1.3e-06
Identities = 15/33 (45%), Positives = 23/33 (69%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQ 173
+T+R+++PA Q G +IGK G I+ IR T+ Q
Sbjct: 25 VTLRLVIPASQCGSLIGKAGTKIKEIREVTKLQ 57
>UNIPROTKB|J9P8J3 [details] [associations]
symbol:J9P8J3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 EMBL:AAEX03000514
Ensembl:ENSCAFT00000047704 Uniprot:J9P8J3
Length = 399
Score = 103 (41.3 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 320 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 374
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 375 GTQDQIQNA 383
Score = 82 (33.9 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 20/67 (29%), Positives = 38/67 (56%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++ +R+L+ + G VIGKGG+ I+ +RT+ A + + D P LS ++ GE
Sbjct: 16 MVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGPERILSISADIETIGE- 73
Query: 200 AVVRKAL 206
+++K +
Sbjct: 74 -ILKKII 79
Score = 37 (18.1 bits), Expect = 1.8e-06, Sum P(3) = 1.8e-06
Identities = 9/23 (39%), Positives = 14/23 (60%)
Query: 309 IFISTKEFFEDPSPTITAALRLQ 331
I + +E + PSPT T+ L L+
Sbjct: 78 IIPTLEEGLQLPSPTATSQLPLE 100
>RGD|1307004 [details] [associations]
symbol:Fubp3 "far upstream element (FUSE) binding protein 3"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0006351
"transcription, DNA-dependent" evidence=ISO] [GO:0010628 "positive
regulation of gene expression" evidence=ISO] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=ISO]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 CTD:8939 OrthoDB:EOG4X97H1
EMBL:DQ144645 IPI:IPI00394110 RefSeq:NP_001034426.1
UniGene:Rn.199412 ProteinModelPortal:Q2QC85 SMR:Q2QC85
GeneID:362106 KEGG:rno:362106 UCSC:RGD:1307004 InParanoid:Q2QC85
NextBio:678673 Genevestigator:Q2QC85 Uniprot:Q2QC85
Length = 569
Score = 121 (47.7 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 36/132 (27%), Positives = 67/132 (50%)
Query: 85 GCDERIVTIYSS-SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITV 143
GC +I + S E + + E + A+ L ++ DR +D G T+
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTI--Q 165
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVR 203
+L+PA ++G VIGKGG+ I+ ++ T ++ +++D LP A D+ L++ G+P V+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGDPFKVQ 222
Query: 204 KALVQIASRLHE 215
+A + + E
Sbjct: 223 QAREMVLEIIRE 234
Score = 66 (28.3 bits), Expect = 2.0e-06, Sum P(2) = 2.0e-06
Identities = 23/93 (24%), Positives = 41/93 (44%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYE 394
S+ T R G + + VP +G +IGR G +I ++++ T I+ ++ +
Sbjct: 245 SDFTSRAGGGSI---EVSVPRFVVGIVIGRNGEMIKKIQNGTGVRIQFKPDDGI-----S 296
Query: 395 DEEMVQITGSLDVASSALSQVTLRLRANTFERE 427
E Q+ G D A +++ L ERE
Sbjct: 297 PERAAQVMGPPDRCQHA-ARIINELILTAQERE 328
Score = 50 (22.7 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 353 VPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385
VP+ + G +IG+GG I + + A + + N
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393
>UNIPROTKB|G3N2N4 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048 KO:K14944
EMBL:DAAA02052552 EMBL:DAAA02052553 RefSeq:XP_001257255.3
Ensembl:ENSBTAT00000065126 GeneID:790874 KEGG:bta:790874
NextBio:20930383 Uniprot:G3N2N4
Length = 385
Score = 93 (37.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 52 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 107
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 108 NRKAVELIIQKIQEDP 123
Score = 91 (37.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 272 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 324
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 325 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 377
Query: 431 AAHP 434
AA+P
Sbjct: 378 AANP 381
>UNIPROTKB|F1MBI6 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:DAAA02052552
EMBL:DAAA02052553 IPI:IPI01028075 Ensembl:ENSBTAT00000031237
Uniprot:F1MBI6
Length = 389
Score = 93 (37.8 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 56 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 111
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 112 NRKAVELIIQKIQEDP 127
Score = 91 (37.1 bits), Expect = 2.2e-06, Sum P(2) = 2.2e-06
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 276 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 328
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 329 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 381
Query: 431 AAHP 434
AA+P
Sbjct: 382 AANP 385
>UNIPROTKB|H9L0I0 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 EMBL:AADN02078253 EMBL:AADN02078254 EMBL:AADN02078255
Ensembl:ENSGALT00000023210 Uniprot:H9L0I0
Length = 426
Score = 103 (41.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 402
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 403 GTQDQIQNA 411
Score = 81 (33.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++ +R+L+ + G VIGKGG+ I+ +RT+ A + + D P LS + GE
Sbjct: 39 MVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGPERILSISADTETIGE- 96
Query: 200 AVVRKALVQIASRLH 214
+++K + + H
Sbjct: 97 -ILKKIIPTLEEYQH 110
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 175
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 176 VECIKIILDLIFESP 190
>UNIPROTKB|H9L242 [details] [associations]
symbol:HNRPK "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 InterPro:IPR012987
Pfam:PF08067 OMA:INPWANG EMBL:AADN02078253 EMBL:AADN02078254
EMBL:AADN02078255 Ensembl:ENSGALT00000035757 Uniprot:H9L242
Length = 427
Score = 103 (41.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 402
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 403 GTQDQIQNA 411
Score = 81 (33.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++ +R+L+ + G VIGKGG+ I+ +RT+ A + + D P LS + GE
Sbjct: 39 MVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGPERILSISADTETIGE- 96
Query: 200 AVVRKALVQIASRLH 214
+++K + + H
Sbjct: 97 -ILKKIIPTLEEYQH 110
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 175
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 176 VECIKIILDLIFESP 190
>UNIPROTKB|Q5ZIQ3 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9031 "Gallus gallus" [GO:0003677 "DNA binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005681
"spliceosomal complex" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0006355 "regulation of
transcription, DNA-dependent" evidence=IEA] [GO:0006397 "mRNA
processing" evidence=IEA] [GO:0008380 "RNA splicing" evidence=IEA]
[GO:0005654 "nucleoplasm" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005737 GO:GO:0005654
GO:GO:0006355 GO:GO:0008380 GO:GO:0003677 GO:GO:0006397
GO:GO:0006351 GO:GO:0005681 GO:GO:0003723 eggNOG:NOG285495
HOGENOM:HOG000019764 HOVERGEN:HBG051916 KO:K12886 OrthoDB:EOG49KFRD
InterPro:IPR012987 Pfam:PF08067 EMBL:AJ720731 IPI:IPI00593692
RefSeq:NP_001026556.1 UniGene:Gga.28787 HSSP:P61978
ProteinModelPortal:Q5ZIQ3 SMR:Q5ZIQ3 STRING:Q5ZIQ3 PRIDE:Q5ZIQ3
GeneID:426516 KEGG:gga:426516 CTD:380255 InParanoid:Q5ZIQ3
NextBio:20828064 Uniprot:Q5ZIQ3
Length = 427
Score = 103 (41.3 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 348 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 402
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 403 GTQDQIQNA 411
Score = 81 (33.6 bits), Expect = 2.5e-06, Sum P(2) = 2.5e-06
Identities = 21/75 (28%), Positives = 39/75 (52%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++ +R+L+ + G VIGKGG+ I+ +RT+ A + + D P LS + GE
Sbjct: 39 MVELRILLQSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGPERILSISADTETIGE- 96
Query: 200 AVVRKALVQIASRLH 214
+++K + + H
Sbjct: 97 -ILKKIIPTLEEYQH 110
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 120 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 175
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 176 VECIKIILDLISESP 190
>UNIPROTKB|F1NP94 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0000398 "mRNA splicing, via spliceosome" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:AADN02003296 EMBL:AADN02003297 EMBL:AADN02003298
EMBL:AADN02003299 EMBL:AADN02003300 EMBL:AADN02003301
EMBL:AADN02003302 EMBL:AADN02003303 EMBL:AADN02003304
EMBL:AADN02003305 EMBL:AADN02003306 EMBL:AADN02003307
EMBL:AADN02003308 EMBL:AADN02003309 EMBL:AADN02003310
EMBL:AADN02003311 EMBL:AADN02003312 EMBL:AADN02003313
EMBL:AADN02003314 EMBL:AADN02003315 IPI:IPI00584544
Ensembl:ENSGALT00000016013 ArrayExpress:F1NP94 Uniprot:F1NP94
Length = 413
Score = 93 (37.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 80 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 135
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 136 NRKAVELIIQKIQEDP 151
Score = 91 (37.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 300 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 352
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 353 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 405
Query: 431 AAHP 434
AA+P
Sbjct: 406 AANP 409
>UNIPROTKB|F1SGT5 [details] [associations]
symbol:NOVA1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003729 "mRNA binding" evidence=IEA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003729 GO:GO:0000398 GeneTree:ENSGT00650000093048
OMA:FRQNNTA EMBL:CT826400 Ensembl:ENSSSCT00000031969 Uniprot:F1SGT5
Length = 417
Score = 93 (37.8 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 23/76 (30%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ I ++ A +++ K + + L + ++ V+GEP
Sbjct: 84 VKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 139
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 140 NRKAVELIIQKIQEDP 155
Score = 91 (37.1 bits), Expect = 2.7e-06, Sum P(2) = 2.7e-06
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 304 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 356
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 357 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 409
Query: 431 AAHP 434
AA+P
Sbjct: 410 AANP 413
>UNIPROTKB|B7Z770 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0000398 "mRNA splicing, via spliceosome"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003729 GO:GO:0000398 IPI:IPI00019244
UniGene:Hs.31588 HGNC:HGNC:7886 HOVERGEN:HBG082048 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 EMBL:AK301526 ProteinModelPortal:B7Z770
SMR:B7Z770 STRING:B7Z770 PRIDE:B7Z770 Ensembl:ENST00000267422
ArrayExpress:B7Z770 Bgee:B7Z770 Uniprot:B7Z770
Length = 385
Score = 92 (37.4 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 22/76 (28%), Positives = 44/76 (57%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLCALSFDELLQVAGEPAV 201
V+++VP G +IGKGG ++ + ++ A +++ K + + L + ++ V+GEP
Sbjct: 52 VKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ----ERVVTVSGEPEQ 107
Query: 202 VRKALVQIASRLHENP 217
RKA+ I ++ E+P
Sbjct: 108 NRKAVELIIQKIQEDP 123
Score = 91 (37.1 bits), Expect = 2.8e-06, Sum P(2) = 2.8e-06
Identities = 38/124 (30%), Positives = 58/124 (46%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T +F SP +A+ +EK+ S D V I VP +G ++G+GG + E
Sbjct: 272 ATNGYFGAASPLAASAIL----GTEKSTDGSKDVV---EIAVPENLVGAILGKGGKTLVE 324
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGAL 430
+ T A I+I E VP V ITG+ +A +T R+ T+E +G
Sbjct: 325 YQELTGARIQISKKGEFVPGTR---NRKVTITGTPAATQAAQYLITQRI---TYE-QGVR 377
Query: 431 AAHP 434
AA+P
Sbjct: 378 AANP 381
>ZFIN|ZDB-GENE-080211-1 [details] [associations]
symbol:nova2 "neuro-oncological ventral antigen 2"
species:7955 "Danio rerio" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-080211-1 GO:GO:0003723 eggNOG:NOG258094
HOGENOM:HOG000007833 HOVERGEN:HBG082048 EMBL:AY597523
IPI:IPI01006797 UniGene:Dr.77006 OrthoDB:EOG4D26RK
ArrayExpress:Q53B45 Uniprot:Q53B45
Length = 473
Score = 111 (44.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 62/254 (24%), Positives = 103/254 (40%)
Query: 25 SKRRNPGDETEQRGIG----SEDTV-------Y--RYLCPLRXXXXXXXXXXXXXXQLRS 71
+KR N GD Q I S D V Y + L P QL+
Sbjct: 31 TKRTNTGDRCNQAAIHDPPFSSDIVGFHEEGEYFLKVLIPSYAAGSIIGKGGQTIVQLQK 90
Query: 72 ETKSNIRISET---VPGCDERIVTIYSSSEGTNLFEDS-GEFVSPAQDALFRVHD-RIVA 126
ET + I++S++ PG ER+ I + E N D E V + + I+
Sbjct: 91 ETGATIKLSKSKDFYPGTTERVCLIQGTVEALNNVHDFIAEKVREMPQSAQKTEPVSILQ 150
Query: 127 EDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL-KDEHLPLC 185
+ + + + +++VP G +IGKGG ++ + ++ A +++ K + + L
Sbjct: 151 PQTTVNPD----RVKQAKLVVPNSTAGLIIGKGGATVKAVMEQSGAWVQLSQKPDGINLQ 206
Query: 186 ALSFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXXXXXXXNIYQSSGVYLSAPLVG 245
+ ++ ++GEP RKA+ I ++ E+P NI S V S P
Sbjct: 207 ----ERVVTISGEPEQNRKAVEIIVQKIQEDPQSSSCLNISYS-NI--SGPVANSNPTGS 259
Query: 246 SYGNYSARRDEASA 259
Y N SA A+A
Sbjct: 260 PYAN-SAEVMPAAA 272
Score = 73 (30.8 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 28/94 (29%), Positives = 42/94 (44%)
Query: 312 STKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISE 371
+T + SP + ++L +EK + D V I VP +G ++G+GG + E
Sbjct: 389 ATNGYLSAASPLVASSLL----ATEKLAEGAKDVV---EIAVPENLVGAILGKGGKTLVE 441
Query: 372 MRSATRASIRILTN-ENVPKVAYEDEEMVQITGS 404
+ T A I+I E VP V ITGS
Sbjct: 442 YQELTGARIQISKKGEFVPGTR---NRKVTITGS 472
>FB|FBgn0262737 [details] [associations]
symbol:mub "mushroom-body expressed" species:7227 "Drosophila
melanogaster" [GO:0017130 "poly(C) RNA binding" evidence=ISS]
[GO:0005634 "nucleus" evidence=IC] [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 EMBL:AE014296
GO:GO:0003723 GO:GO:0000381 GeneTree:ENSGT00550000074311 KO:K13162
EMBL:BT030417 RefSeq:NP_001163493.1 RefSeq:NP_001246873.1
UniGene:Dm.2502 SMR:A4IJ59 STRING:A4IJ59 EnsemblMetazoa:FBtr0301364
EnsemblMetazoa:FBtr0304980 GeneID:40436 KEGG:dme:Dmel_CG7437
CTD:40436 FlyBase:FBgn0262737 GenomeRNAi:40436 NextBio:818772
Uniprot:A4IJ59
Length = 557
Score = 103 (41.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 33/110 (30%), Positives = 55/110 (50%)
Query: 110 VSPAQDALFRVHDRIVAEDSLADDEFGEL--TLITVRMLVPADQIGCVIGKGGQVIQNIR 167
VS +A+F I + +D G++ T I +R++VPA Q G +IGK G I+ IR
Sbjct: 71 VSGTTNAIFSAFTLITKKFEEFND-VGKVGKTQIPIRLIVPASQCGSLIGKSGSKIKEIR 129
Query: 168 TETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENP 217
T I++ E LP S + + ++G + + + QI + E+P
Sbjct: 130 QTTGCSIQVAS-EMLPN---STERAVTLSGSAEQITQCIYQICLVMLESP 175
Score = 89 (36.4 bits), Expect = 0.00010, Sum P(2) = 0.00010
Identities = 33/112 (29%), Positives = 53/112 (47%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
+ R E+ + I IS+ C ERIVT+ S TN + ++ F + +
Sbjct: 48 RFREESGAKINISDG--SCPERIVTV---SGTTNAIFSAFTLITKK----FEEFNDV--- 95
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKD 179
+ G+ T I +R++VPA Q G +IGK G I+ IR T I++ +
Sbjct: 96 -----GKVGK-TQIPIRLIVPASQCGSLIGKSGSKIKEIRQTTGCSIQVASE 141
Score = 84 (34.6 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
+T+R+++ ++G +IGK G+++ R E+ A+I I D P + ++ V+G
Sbjct: 24 LTIRLIMQGKEVGSIIGKKGEIVNRFREESGAKINI-SDGSCP------ERIVTVSGTTN 76
Query: 201 VVRKALVQIASRLHE 215
+ A I + E
Sbjct: 77 AIFSAFTLITKKFEE 91
Score = 83 (34.3 bits), Expect = 3.2e-06, Sum P(2) = 3.2e-06
Identities = 28/85 (32%), Positives = 44/85 (51%)
Query: 358 IGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSA--LSQV 415
IGC+IG+GG I+E+R + A IRI E + + + I+G+ D + A L +
Sbjct: 297 IGCIIGKGGTKIAEIRQISGAMIRISNCEE--REGGNTDRTITISGNPDSVALAQYLINM 354
Query: 416 TLRL-RANTFER-----EGALAAHP 434
++ L +AN E+ G AA P
Sbjct: 355 SVELQKANLLEQAQSQQNGGAAAAP 379
>UNIPROTKB|Q9GZT1 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IDA] [GO:0008630
"intrinsic apoptotic signaling pathway in response to DNA damage"
evidence=IDA] [GO:0006977 "DNA damage response, signal transduction
by p53 class mediator resulting in cell cycle arrest" evidence=IDA]
[GO:0005575 "cellular_component" evidence=ND] [GO:0007050 "cell
cycle arrest" evidence=IDA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0008630
GO:GO:0006977 EMBL:CH471055 GO:GO:0007050 GO:GO:0003723
EMBL:AC115284 HOGENOM:HOG000182823 HOVERGEN:HBG053520
UniGene:Hs.20930 HGNC:HGNC:8652 NextBio:62848 EMBL:AF257770
EMBL:AF257772 IPI:IPI00006997 HSSP:Q9UNW9 SMR:Q9GZT1 STRING:Q9GZT1
Ensembl:ENST00000395014 UCSC:uc003dcc.2 Uniprot:Q9GZT1
Length = 424
Score = 98 (39.6 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 39/109 (35%), Positives = 53/109 (48%)
Query: 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQ 400
+ G + LVP+ IGC+IGR G+ ISE+R + A I+I N + A E V
Sbjct: 257 DPGTQTSSQEFLVPNDLIGCVIGRQGSKISEIRQMSGAHIKI---GNQAEGA--GERHVT 311
Query: 401 ITGSLDVASSALSQ--VTLRLRANTFEREGALAAHPPVLPYVPMSLDIT 447
ITGS S AL+Q +T L G ++ P LP P S +T
Sbjct: 312 ITGS--PVSIALAQYLITACLETAKSTSGGTPSSAPADLP-APFSPPLT 357
Score = 85 (35.0 bits), Expect = 3.4e-06, Sum P(2) = 3.4e-06
Identities = 32/103 (31%), Positives = 53/103 (51%)
Query: 74 KSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADD 133
+S+ RI+ + C ERI TI S+ F + + A F++ + + A A
Sbjct: 12 QSSARITISEGSCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCA----APA 58
Query: 134 EFGELTL--ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQI 174
G ++ +T+R+++PA Q G +IGK G I+ IR E R +I
Sbjct: 59 NGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIR-EVRGEI 100
>ZFIN|ZDB-GENE-040426-1923 [details] [associations]
symbol:hnrpkl "heterogeneous nuclear
ribonucleoprotein K, like" species:7955 "Danio rerio" [GO:0003723
"RNA binding" evidence=IEA] [GO:0008150 "biological_process"
evidence=ND] [GO:0030529 "ribonucleoprotein complex" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
ZFIN:ZDB-GENE-040426-1923 GO:GO:0003723 GO:GO:0030529
HOVERGEN:HBG051916 InterPro:IPR012987 Pfam:PF08067 EMBL:BC096867
IPI:IPI00493887 UniGene:Dr.47275 ProteinModelPortal:Q4V9J6
SMR:Q4V9J6 STRING:Q4V9J6 InParanoid:Q4V9J6 NextBio:20817897
ArrayExpress:Q4V9J6 Uniprot:Q4V9J6
Length = 431
Score = 104 (41.7 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 27/69 (39%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G PVITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 352 GGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 406
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 407 GTQDQIQNA 415
Score = 78 (32.5 bits), Expect = 4.0e-06, Sum P(2) = 4.0e-06
Identities = 21/76 (27%), Positives = 41/76 (53%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++ +R+L+ + G VIGKGG+ I+ +RT+ A + + D P + +L V+ +
Sbjct: 43 MVELRVLLRSKNAGAVIGKGGKNIKALRTDYNASVSV-PDSSGP------ERILSVSADI 95
Query: 200 AVVRKALVQIASRLHE 215
+ + L++I L E
Sbjct: 96 DTIGEILLKIIPTLEE 111
Score = 73 (30.8 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 20/75 (26%), Positives = 37/75 (49%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ V G+P V
Sbjct: 124 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLVGGKPERV 179
Query: 203 RKALVQIASRLHENP 217
+ + I + E P
Sbjct: 180 VECIKVILELIAEAP 194
>ZFIN|ZDB-GENE-040426-1926 [details] [associations]
symbol:hnrnpk "heterogeneous nuclear
ribonucleoprotein K" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0030529 "ribonucleoprotein complex"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 ZFIN:ZDB-GENE-040426-1926 GO:GO:0003723 CTD:3190
GeneTree:ENSGT00550000074311 InterPro:IPR012987 Pfam:PF08067
EMBL:CR376792 EMBL:CU682767 IPI:IPI00865147 RefSeq:NP_998159.2
UniGene:Dr.106469 UniGene:Dr.122250 Ensembl:ENSDART00000097919
GeneID:406267 KEGG:dre:406267 NextBio:20817900 ArrayExpress:F1QWB4
Bgee:F1QWB4 Uniprot:F1QWB4
Length = 429
Score = 101 (40.6 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 27/70 (38%), Positives = 41/70 (58%)
Query: 342 SGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQI 401
S PVITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ I
Sbjct: 349 SDGPVITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLQGSEDR-IITI 403
Query: 402 TGSLDVASSA 411
TG+ D +A
Sbjct: 404 TGTQDQIQNA 413
Score = 81 (33.6 bits), Expect = 4.2e-06, Sum P(2) = 4.2e-06
Identities = 22/76 (28%), Positives = 41/76 (53%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
++ +R+L+ + G VIGKGG+ I+ +RT+ A + + D P + +L V+ +
Sbjct: 42 MVELRILLQSKNAGAVIGKGGKNIKALRTDYNATVSV-PDSSGP------ERILSVSADI 94
Query: 200 AVVRKALVQIASRLHE 215
V + L++I L E
Sbjct: 95 PTVAEILLKIIPTLEE 110
Score = 65 (27.9 bits), Expect = 0.00018, Sum P(2) = 0.00018
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ V G+ V
Sbjct: 123 LRLLIHQSLAGSIIGLKGAKIKELRDSTQTTIKLFQE----CCPQSTDRVVLVGGKAERV 178
Query: 203 RKALVQIASRLHENP 217
+ + + + E P
Sbjct: 179 VQCIKTMLELIVEAP 193
>UNIPROTKB|B4DLC0 [details] [associations]
symbol:PCBP2 "Poly(rC)-binding protein 2" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IDA] [GO:0005730 "nucleolus" evidence=IDA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0005634 GO:GO:0005737 GO:GO:0003723 EMBL:AC068889
EMBL:AC023509 HOVERGEN:HBG053520 HGNC:HGNC:8648 ChiTaRS:PCBP2
EMBL:AK296930 IPI:IPI01009186 SMR:B4DLC0 STRING:B4DLC0
Ensembl:ENST00000541275 UCSC:uc010soh.1 Uniprot:B4DLC0
Length = 301
Score = 134 (52.2 bits), Expect = 4.4e-06, P = 4.4e-06
Identities = 42/150 (28%), Positives = 74/150 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ + +F+ + ++ +
Sbjct: 38 KMREESGARINISEG--NCPERIITLAGPTNA--IFKAFAMIIDKLEEDI---------S 84
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++VPA Q G +IGKGG I+ IR T AQ+++ D LP
Sbjct: 85 SSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGDM-LPN--- 140
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + +AG P + + + QI + E+P
Sbjct: 141 STERAITIAGIPQSIIECVKQICVVMLESP 170
>UNIPROTKB|F1S0X8 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:CU914779
Ensembl:ENSSSCT00000006271 Uniprot:F1S0X8
Length = 548
Score = 122 (48.0 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 36/132 (27%), Positives = 67/132 (50%)
Query: 85 GCDERIVTIYSS-SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITV 143
GC +I + S E + + E + A+ L ++ DR +D G T+
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDVDGSSTI--Q 165
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVR 203
+L+PA ++G VIGKGG+ I+ ++ T ++ +++D LP A D+ L++ G+P V+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGDPFKVQ 222
Query: 204 KALVQIASRLHE 215
+A + + E
Sbjct: 223 QAREMVLEIIRE 234
Score = 61 (26.5 bits), Expect = 4.6e-06, Sum P(2) = 4.6e-06
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P E Q+ G D
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPERAAQVMGPPDRCQH 312
Query: 411 ALSQVTLRLRANTFEREG 428
A + V L ER+G
Sbjct: 313 A-AHVISELILTAQERDG 329
Score = 50 (22.7 bits), Expect = 6.1e-05, Sum P(2) = 6.1e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 353 VPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385
VP+ + G +IG+GG I + + A + + N
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393
>ASPGD|ASPL0000045500 [details] [associations]
symbol:AN10257 species:162425 "Emericella nidulans"
[GO:0010834 "telomere maintenance via telomere shortening"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:BN001307 GO:GO:0003723
EnsemblFungi:CADANIAT00008760 OMA:ESENNAE Uniprot:C8VLW6
Length = 465
Score = 102 (41.0 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 28/79 (35%), Positives = 47/79 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P +T +I +P+ +G +IG+GGA I+E+R + + I+I NE P+ +E +V IT
Sbjct: 388 GQP-LTQQIYIPNDMVGAIIGKGGAKINEIRHLSGSVIKI--NE--PQ-ENSNERLVTIT 441
Query: 403 GSLDVASSALSQVTLRLRA 421
G+ + AL + RL +
Sbjct: 442 GTQECNQMALYMLYSRLES 460
Score = 80 (33.2 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 32/109 (29%), Positives = 49/109 (44%)
Query: 110 VSPAQDALFRVHDRIVA---EDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNI 166
VS QDA+ + I+ + L + +R+L+P IG +IGKGG I+ I
Sbjct: 157 VSGPQDAVAKAFGLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREI 216
Query: 167 RTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215
+ + A++ D LPL S + L + G V A +A L E
Sbjct: 217 QDASGARLNA-SDACLPL---STERSLVILGVADAVHIATYYVAVTLVE 261
Score = 67 (28.6 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 28/132 (21%), Positives = 48/132 (36%)
Query: 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVA 196
E I +R ++ + + VIGKGG+ + IR + A+ + D + + +L V+
Sbjct: 104 ESNWIHIRAVISSQEAATVIGKGGENVSQIRRLSGAKCTV-SDYSRG----AVERILTVS 158
Query: 197 GEPAVVRKALVQIASRLHENPXXXXXXXXXXXXNIYQSSGVYLSAPLVGSYGNYSARRDE 256
G V KA I L+ P + L ++G G +
Sbjct: 159 GPQDAVAKAFGLIIRTLNNEPLDAASTAQSKTYPLRLLIPHILIGSIIGKGGTRIREIQD 218
Query: 257 ASAREFSLRLVC 268
AS + C
Sbjct: 219 ASGARLNASDAC 230
>UNIPROTKB|G3V829 [details] [associations]
symbol:Fubp3 "RCG45587" species:10116 "Rattus norvegicus"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA] [GO:0006351
"transcription, DNA-dependent" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 RGD:1307004 GO:GO:0003723 EMBL:CH474001
InterPro:IPR015096 Pfam:PF09005 GeneTree:ENSGT00650000093048
EMBL:AC108321 Ensembl:ENSRNOT00000021871 Uniprot:G3V829
Length = 569
Score = 121 (47.7 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 36/132 (27%), Positives = 67/132 (50%)
Query: 85 GCDERIVTIYSS-SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITV 143
GC +I + S E + + E + A+ L ++ DR +D G T+
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTI--Q 165
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVR 203
+L+PA ++G VIGKGG+ I+ ++ T ++ +++D LP A D+ L++ G+P V+
Sbjct: 166 ELLIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGDPFKVQ 222
Query: 204 KALVQIASRLHE 215
+A + + E
Sbjct: 223 QAREMVLEIIRE 234
Score = 62 (26.9 bits), Expect = 5.1e-06, Sum P(2) = 5.1e-06
Identities = 25/93 (26%), Positives = 41/93 (44%)
Query: 335 SEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYE 394
S+ T R G + + VP +G +IGR G +I ++++ A +RI + P
Sbjct: 245 SDFTSRAGGGSI---EVSVPRFVVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGIS 296
Query: 395 DEEMVQITGSLDVASSALSQVTLRLRANTFERE 427
E Q+ G D A +++ L ERE
Sbjct: 297 PERAAQVMGPPDRCQHA-ARIINELILTAQERE 328
Score = 50 (22.7 bits), Expect = 8.6e-05, Sum P(2) = 8.6e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 353 VPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385
VP+ + G +IG+GG I + + A + + N
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393
>ZFIN|ZDB-GENE-050706-149 [details] [associations]
symbol:zgc:110045 "zgc:110045" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-050706-149
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:CR759794
eggNOG:NOG315872 HOGENOM:HOG000182823 HOVERGEN:HBG053520
OrthoDB:EOG46WZ8K EMBL:BC098540 IPI:IPI00629204
RefSeq:NP_001035073.1 UniGene:Dr.87947 SMR:Q4KMJ2
Ensembl:ENSDART00000079745 GeneID:664755 KEGG:dre:664755
OMA:QSCARIT NextBio:20902333 Uniprot:Q4KMJ2
Length = 222
Score = 129 (50.5 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 44/150 (29%), Positives = 77/150 (51%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I IS+ ERIVTI +SE +F+ F A+ + + I+A
Sbjct: 41 KMREESGARINISDG--SSPERIVTITGASEV--IFK---AFAMIAE----KFEEDILA- 88
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +T+R++ PA Q G +IGKGG I+ IR T AQ+++ D L
Sbjct: 89 -SMINSTVTSRPPVTLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQVAGD----LLPD 143
Query: 188 SFDELLQVAGEPAVVRKALVQIASRLHENP 217
S + + ++G P + + + I + + E+P
Sbjct: 144 STERAVTISGTPHAITQCVKHICTVMLESP 173
Score = 112 (44.5 bits), Expect = 0.00062, P = 0.00062
Identities = 34/135 (25%), Positives = 61/135 (45%)
Query: 288 RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVI 347
R+ESGA I + S G+ + + E I S + P +
Sbjct: 43 REESGARINI-SDGSSPERIVTITGASEVIFKAFAMIAEKFEEDILASMINSTVTSRPPV 101
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T R++ P++Q G LIG+GG+ I E+R +T A +++ + +P E V I+G+
Sbjct: 102 TLRLVFPASQCGSLIGKGGSKIKEIRESTGAQVQV-AGDLLPD---STERAVTISGTPHA 157
Query: 408 ASSALSQV-TLRLRA 421
+ + + T+ L +
Sbjct: 158 ITQCVKHICTVMLES 172
>UNIPROTKB|J9P1I9 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
EMBL:AAEX03006837 EMBL:AAEX03006838 Ensembl:ENSCAFT00000048747
Uniprot:J9P1I9
Length = 487
Score = 120 (47.3 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 36/132 (27%), Positives = 67/132 (50%)
Query: 85 GCDERIVTIYSS-SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITV 143
GC +I + S E + + E + A+ L ++ DR +D G T+ +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEI 167
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVR 203
L+PA ++G VIGKGG+ I+ ++ T ++ +++D LP A D+ L++ G+P V+
Sbjct: 168 --LIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGDPFKVQ 222
Query: 204 KALVQIASRLHE 215
+A + + E
Sbjct: 223 QAREMVLEIIRE 234
Score = 60 (26.2 bits), Expect = 6.9e-06, Sum P(2) = 6.9e-06
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P E Q+ G D
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPERAAQVMGPPDRCQH 312
Query: 411 ALSQVTLRLRANTFEREG 428
A + V L ER+G
Sbjct: 313 A-AHVINELILTAQERDG 329
Score = 49 (22.3 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 353 VPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385
VP+ + G +IG+GG I + + A + + N
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQSGAHVELQRN 393
>UNIPROTKB|F1PEW1 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00650000093048
OMA:AAPHQNT EMBL:AAEX03006837 EMBL:AAEX03006838
Ensembl:ENSCAFT00000031728 Uniprot:F1PEW1
Length = 547
Score = 120 (47.3 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 36/132 (27%), Positives = 67/132 (50%)
Query: 85 GCDERIVTIYSS-SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITV 143
GC +I + S E + + E + A+ L ++ DR +D G T+ +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDGNSTIQEI 167
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVR 203
L+PA ++G VIGKGG+ I+ ++ T ++ +++D LP A D+ L++ G+P V+
Sbjct: 168 --LIPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGDPFKVQ 222
Query: 204 KALVQIASRLHE 215
+A + + E
Sbjct: 223 QAREMVLEIIRE 234
Score = 60 (26.2 bits), Expect = 9.6e-06, Sum P(2) = 9.6e-06
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P E Q+ G D
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPERAAQVMGPPDRCQH 312
Query: 411 ALSQVTLRLRANTFEREG 428
A + V L ER+G
Sbjct: 313 A-AHVINELILTAQERDG 329
Score = 49 (22.3 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 353 VPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385
VP+ + G +IG+GG I + + A + + N
Sbjct: 361 VPADKCGLVIGKGGDNIKSINQQSGAHVELQRN 393
>UNIPROTKB|E2RJ54 [details] [associations]
symbol:E2RJ54 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 GeneTree:ENSGT00550000074311
InterPro:IPR012987 Pfam:PF08067 OMA:INPWANG EMBL:AAEX03026697
Ensembl:ENSCAFT00000027729 NextBio:20855871 Uniprot:E2RJ54
Length = 439
Score = 95 (38.5 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 25/69 (36%), Positives = 40/69 (57%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ + G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 360 GGPIITTQVTISKDLAGSIIGKGGRRIKQVRHESGASIKI--DE--PLEGSEDR-VITIT 414
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 415 GTQDQIQNA 423
Score = 84 (34.6 bits), Expect = 1.0e-05, Sum P(2) = 1.0e-05
Identities = 32/112 (28%), Positives = 53/112 (47%)
Query: 104 EDSGEFVS-PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
E +GEF PA+D + + + S DE EL R+L+ + G VIGKGG+
Sbjct: 14 ETNGEFGKCPAED----MEEEQAFKRSRNTDEMVEL-----RILLQSKNAGAVIGKGGKN 64
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLH 214
I+ + T+ A + + D P LS ++ GE +++K + + H
Sbjct: 65 IKALHTDYNASVSV-PDSSGPERILSISADIETIGE--ILKKIIPTLEEYQH 113
Score = 69 (29.3 bits), Expect = 0.00034, Sum P(2) = 0.00034
Identities = 18/75 (24%), Positives = 37/75 (49%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C D ++ + G+P V
Sbjct: 123 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHPTDRVVLIGGKPDRV 178
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 179 VECIKIILDLISESP 193
>CGD|CAL0000592 [details] [associations]
symbol:orf19.5627 species:5476 "Candida albicans" [GO:0000784
"nuclear chromosome, telomeric region" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IEA]
[GO:0006469 "negative regulation of protein kinase activity"
evidence=IEA] [GO:0008298 "intracellular mRNA localization"
evidence=IEA] [GO:0007004 "telomere maintenance via telomerase"
evidence=IEA] [GO:0048255 "mRNA stabilization" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 CGD:CAL0000592 GO:GO:0003723 EMBL:AACQ01000034
eggNOG:NOG315872 RefSeq:XP_719187.1 ProteinModelPortal:Q5ABS3
GeneID:3639231 KEGG:cal:CaO19.5627 Uniprot:Q5ABS3
Length = 368
Score = 100 (40.3 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 29/74 (39%), Positives = 39/74 (52%)
Query: 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
LI R+LV A + GC+IG GQVI +IR ET + I + L S + +L V+G+
Sbjct: 69 LINYRVLVSAKEAGCLIGTNGQVIDSIRNETNTKAGISR-----LIPGSHERILTVSGKL 123
Query: 200 AVVRKALVQIASRL 213
KAL A L
Sbjct: 124 DDCAKALSYFAQAL 137
Score = 76 (31.8 bits), Expect = 1.1e-05, Sum P(2) = 1.1e-05
Identities = 18/57 (31%), Positives = 36/57 (63%)
Query: 350 RILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
R+L+P++Q+G LIG GA I ++++ S+ I + +P +E +V++ G++D
Sbjct: 166 RLLIPNSQMGTLIGSKGARIQQLQNNFNISM-IASKSFLPG---SNERLVELQGTVD 218
Score = 67 (28.6 bits), Expect = 9.2e-05, Sum P(2) = 9.2e-05
Identities = 28/86 (32%), Positives = 42/86 (48%)
Query: 342 SGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQI 401
SG T I P+ +G LIG+ G+ I +R + A I I +E + E+E + I
Sbjct: 282 SGGNKTTDTISFPNDIVGALIGKRGSRIDGVRKVSGAMIAI--SEAIEG---ENERVFTI 336
Query: 402 TGSLDVASSALSQVTLRLRANTFERE 427
TGS S A+ + + N F+RE
Sbjct: 337 TGS----SHAVDKAKQMIYQN-FKRE 357
>UNIPROTKB|F1MPB2 [details] [associations]
symbol:IGF2BP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
KO:K13197 GeneTree:ENSGT00530000063171 CTD:10643 OMA:EAQDTKF
EMBL:DAAA02010222 IPI:IPI00712553 RefSeq:NP_001179217.1
UniGene:Bt.80827 PRIDE:F1MPB2 Ensembl:ENSBTAT00000025854
GeneID:539650 KEGG:bta:539650 NextBio:20878131 Uniprot:F1MPB2
Length = 580
Score = 135 (52.6 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 90/428 (21%), Positives = 174/428 (40%)
Query: 23 GGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET 82
G S++ +PG ++Q+ D R L P + + +T+S I +
Sbjct: 178 GSSRQGSPGSVSKQKPC---DLPLRLLVPTQFVGAIIGKEGATIRNITKQTQSKIDVHRK 234
Query: 83 V-PGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLI 141
G E+ +TI S+ EGT+ + + L +H A+D +E I
Sbjct: 235 ENAGAAEKSITILSTPEGTS---------AACKSILEIMHKE--AQDIKFTEE------I 277
Query: 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAV 201
+++L + +G +IGK G+ ++ I +T +I I + L L + + + V G
Sbjct: 278 PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQELTL--YNPERTITVKGNVET 335
Query: 202 VRKALVQIASRLHENPXXXXXXXXXXXXNI--YQSSGVYLSAPLVG----SYGNYSA--- 252
KA +I ++ E+ I + + L P G + G SA
Sbjct: 336 CAKAEEEIMKKIRESYENDIASMNLQAHLIPGLNLNALGLFPPTSGMPPPTSGPPSAITP 395
Query: 253 --RRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIF 310
+ E + ++ L PA + +GASIK+ + AE D +
Sbjct: 396 PYPQFEQQSETETVHLFIPALSVGAIIGKQGQHIKQLSRFAGASIKI--APAEAPDAKVR 453
Query: 311 ISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-ITTRILVPSAQIGCLIGRGGAII 369
+ P A R+ + E+ + V + I VPS G +IG+GG +
Sbjct: 454 MVI--ITGPPEAQFKAQGRIYGKIKEENFVSPKEEVKLEAHIRVPSFAAGRVIGKGGKTV 511
Query: 370 SEMRSATRASIRILTNENVPKVAYEDEEMVQITG---SLDVASSALSQVTLRLRANTFER 426
+E+++ + A + ++ + P D+ +V+ITG + VA + ++ +++ + ++
Sbjct: 512 NELQNLSSAEV-VVPRDQTPDE--NDQVVVKITGHFYACQVAQRKIQEILTQVKQH--QQ 566
Query: 427 EGALAAHP 434
+ AL + P
Sbjct: 567 QKALQSGP 574
>UNIPROTKB|Q5T6W5 [details] [associations]
symbol:HNRNPK "Heterogeneous nuclear ribonucleoprotein K"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005730 "nucleolus"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0003723
GO:GO:0030529 EMBL:AL354733 HOGENOM:HOG000019764 HOVERGEN:HBG051916
InterPro:IPR012987 Pfam:PF08067 UniGene:Hs.522257 HGNC:HGNC:5044
ChiTaRS:HNRNPK IPI:IPI00514561 SMR:Q5T6W5 MINT:MINT-1445469
Ensembl:ENST00000435158 Uniprot:Q5T6W5
Length = 428
Score = 103 (41.3 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 26/69 (37%), Positives = 41/69 (59%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G P+ITT++ +P G +IG+GG I ++R + ASI+I +E P ED ++ IT
Sbjct: 349 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKI--DE--PLEGSEDR-IITIT 403
Query: 403 GSLDVASSA 411
G+ D +A
Sbjct: 404 GTQDQIQNA 412
Score = 74 (31.1 bits), Expect = 1.3e-05, Sum P(2) = 1.3e-05
Identities = 19/75 (25%), Positives = 38/75 (50%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
+R+L+ G +IG G I+ +R T+ I++ ++ C S D ++ + G+P V
Sbjct: 112 LRLLIHQSLAGGIIGVKGAKIKELRENTQTTIKLFQE----CCPHSTDRVVLIGGKPDRV 167
Query: 203 RKALVQIASRLHENP 217
+ + I + E+P
Sbjct: 168 VECIKIILDLISESP 182
>WB|WBGene00017816 [details] [associations]
symbol:F26B1.2b species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0009792 "embryo
development ending in birth or egg hatching" evidence=IMP]
[GO:0007126 "meiosis" evidence=IMP] [GO:0045132 "meiotic chromosome
segregation" evidence=IMP] [GO:0006974 "response to DNA damage
stimulus" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0009792
GO:GO:0006974 GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 91 (37.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLP--LCALSFDE 191
VR+LV + G +IGKGG+ I+ +R E A +++ D + P +C ++ DE
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-PDSNTPERVCTVTADE 101
Score = 89 (36.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL-SFD 190
+D F E VRMLV G +IG+ G I+ +R + A+++I CA S D
Sbjct: 116 EDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPGSTD 170
Query: 191 ELLQVAGEPAVVRKALVQIASRLHENP 217
+L +GE V + ++ L E P
Sbjct: 171 RVLITSGEQKNVLGIIEEVMKELKEIP 197
Score = 83 (34.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G PV T ++ +PS G +IGRGG I+ +R + A I + + P E ++ I
Sbjct: 313 GGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP------ERIITIK 366
Query: 403 GSLDVASSALSQVTLRLRANTFERE 427
G+ SA + +R +T RE
Sbjct: 367 GTEQQIHSAQYLLQQCVRNSTQGRE 391
>UNIPROTKB|P91277 [details] [associations]
symbol:F26B1.2 "Protein F26B1.2, isoform a" species:6239
"Caenorhabditis elegans" [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0009792 GO:GO:0006974
GO:GO:0003723 GO:GO:0045132 eggNOG:NOG285495
GeneTree:ENSGT00550000074311 HOGENOM:HOG000019764 KO:K12886
HSSP:P61978 EMBL:FO080500 OMA:INPWANG PIR:T30168 RefSeq:NP_740869.1
ProteinModelPortal:P91277 SMR:P91277 DIP:DIP-27318N IntAct:P91277
MINT:MINT-1054372 STRING:P91277 PaxDb:P91277 PRIDE:P91277
EnsemblMetazoa:F26B1.2a GeneID:172330 KEGG:cel:CELE_F26B1.2
UCSC:F26B1.2c.3 CTD:172330 WormBase:F26B1.2a InParanoid:P91277
NextBio:875055 ArrayExpress:P91277 Uniprot:P91277
Length = 397
Score = 91 (37.1 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 19/51 (37%), Positives = 32/51 (62%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLP--LCALSFDE 191
VR+LV + G +IGKGG+ I+ +R E A +++ D + P +C ++ DE
Sbjct: 52 VRLLVSSKSAGAIIGKGGENIKRLRAEFNAHVQV-PDSNTPERVCTVTADE 101
Score = 89 (36.4 bits), Expect = 4.3e-05, Sum P(2) = 4.3e-05
Identities = 27/87 (31%), Positives = 41/87 (47%)
Query: 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL-SFD 190
+D F E VRMLV G +IG+ G I+ +R + A+++I CA S D
Sbjct: 116 EDNFSERDPCEVRMLVHQSHAGALIGRNGSKIKELREKCSARLKIFTG-----CAPGSTD 170
Query: 191 ELLQVAGEPAVVRKALVQIASRLHENP 217
+L +GE V + ++ L E P
Sbjct: 171 RVLITSGEQKNVLGIIEEVMKELKEIP 197
Score = 83 (34.3 bits), Expect = 2.6e-05, Sum P(2) = 2.6e-05
Identities = 26/85 (30%), Positives = 41/85 (48%)
Query: 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQIT 402
G PV T ++ +PS G +IGRGG I+ +R + A I + + P E ++ I
Sbjct: 313 GGPVTTAQVTIPSDLGGTIIGRGGERIARIRQESGAQITLEQSNGQP------ERIITIK 366
Query: 403 GSLDVASSALSQVTLRLRANTFERE 427
G+ SA + +R +T RE
Sbjct: 367 GTEQQIHSAQYLLQQCVRNSTQGRE 391
>ZFIN|ZDB-GENE-070912-44 [details] [associations]
symbol:igf2bp2a "insulin-like growth factor 2 mRNA
binding protein 2a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-070912-44
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:CR936497
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG4FBHSJ EMBL:CT737147
IPI:IPI00865862 SMR:A9C3V8 Ensembl:ENSDART00000102419
Uniprot:A9C3V8
Length = 606
Score = 94 (38.1 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 36/128 (28%), Positives = 63/128 (49%)
Query: 291 SGASIKVDSSGAEGDDCI--IFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-I 347
+GASIK+ + AE D + I T P A R+ + E+ + + V +
Sbjct: 463 AGASIKI--APAESPDVTQRMVIITGP----PEAQFKAQGRIFGKLKEENFFTAKEEVKL 516
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T I VPS+ G +IG+GG ++E+++ T A + I+ + P DE V+I+G
Sbjct: 517 ETHIKVPSSAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPDE--NDEVFVKISGHFFA 573
Query: 408 ASSALSQV 415
+ +A ++
Sbjct: 574 SQTAQRKI 581
Score = 84 (34.6 bits), Expect = 2.9e-05, Sum P(2) = 2.9e-05
Identities = 16/39 (41%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+RMLVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 200 LRMLVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKEN 238
>UNIPROTKB|A6QP83 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0045893 "positive regulation of transcription,
DNA-dependent" evidence=IEA] [GO:0006351 "transcription,
DNA-dependent" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
GeneTree:ENSGT00650000093048 CTD:8939 OMA:AAPHQNT OrthoDB:EOG4X97H1
EMBL:DAAA02032235 EMBL:DAAA02032236 EMBL:BC149198 IPI:IPI00714784
RefSeq:NP_001094687.1 UniGene:Bt.2190 SMR:A6QP83
Ensembl:ENSBTAT00000017383 GeneID:541080 KEGG:bta:541080
InParanoid:A6QP83 NextBio:20878996 Uniprot:A6QP83
Length = 572
Score = 114 (45.2 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 35/132 (26%), Positives = 66/132 (50%)
Query: 85 GCDERIVTIYSS-SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITV 143
GC +I + S E + + E + A+ L ++ DR +D G T+ +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDVDGNSTVQEI 167
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVR 203
+PA ++G VIGKGG+ I+ ++ T ++ +++D LP A D+ L++ G+P V+
Sbjct: 168 P--IPASKVGLVIGKGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGDPFKVQ 222
Query: 204 KALVQIASRLHE 215
+A + + E
Sbjct: 223 QAREMVLEIIRE 234
Score = 61 (26.5 bits), Expect = 3.8e-05, Sum P(2) = 3.8e-05
Identities = 22/78 (28%), Positives = 35/78 (44%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P E Q+ G D
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPERAAQVMGPPDRCQH 312
Query: 411 ALSQVTLRLRANTFEREG 428
A + V L ER+G
Sbjct: 313 A-AHVISELILTAQERDG 329
Score = 50 (22.7 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 10/33 (30%), Positives = 18/33 (54%)
Query: 353 VPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385
VP+ + G +IG+GG I + + A + + N
Sbjct: 361 VPADKCGLVIGKGGENIKSINQQSGAHVELQRN 393
>SGD|S000000437 [details] [associations]
symbol:PBP2 "RNA binding protein" species:4932 "Saccharomyces
cerevisiae" [GO:0010834 "telomere maintenance via telomere
shortening" evidence=IGI] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0030529 "ribonucleoprotein complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003729 "mRNA binding" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 SGD:S000000437 GO:GO:0005634 GO:GO:0005737
GO:GO:0003729 EMBL:BK006936 GO:GO:0030529 RefSeq:NP_009792.3
GeneID:852533 KEGG:sce:YBR233W GeneTree:ENSGT00550000074311
KO:K00565 RefSeq:NP_009795.3 GeneID:852538 KEGG:sce:YBR236C
EMBL:Z36101 PIR:S46109 ProteinModelPortal:P38151 SMR:P38151
DIP:DIP-4947N IntAct:P38151 MINT:MINT-570424 STRING:P38151
PaxDb:P38151 EnsemblFungi:YBR233W CYGD:YBR233w eggNOG:NOG315872
HOGENOM:HOG000000730 OMA:GKHINSV OrthoDB:EOG4CRQ87 NextBio:971589
Genevestigator:P38151 GermOnline:YBR233W GO:GO:0010834
Uniprot:P38151
Length = 413
Score = 123 (48.4 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 46/171 (26%), Positives = 74/171 (43%)
Query: 43 DTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNL 102
D R LC ++ +++SET + I IS + G ERIV + GT
Sbjct: 66 DVHLRMLCLVKHASLIVGHKGATISRIKSETSARINISNNIRGVPERIVYV----RGT-- 119
Query: 103 FEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQV 162
+D + AL H ED+ D E I++ +L+P +GC+IGK G
Sbjct: 120 CDDVAKAYGMIVRALLEEHGN---EDNGEDIE------ISINLLIPHHLMGCIIGKRGSR 170
Query: 163 IQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRL 213
++ I + A++ ++ L LS D +L + G P + A I+ L
Sbjct: 171 LREIEDLSAAKLFASPNQLL----LSNDRILTINGVPDAIHIATFYISQTL 217
Score = 47 (21.6 bits), Expect = 4.2e-05, Sum P(2) = 4.2e-05
Identities = 17/81 (20%), Positives = 38/81 (46%)
Query: 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
+ I + +G +IG+ G I+ ++ +T SI I+ + P V E + I G+
Sbjct: 331 VQQEIFIDEKFVGNVIGKDGKHINSVKESTGCSI-IIQD---P-VEGSSERRLTIRGTFM 385
Query: 407 VASSALSQVTLRLRANTFERE 427
+ +A+ ++ ++ + E
Sbjct: 386 ASQAAIMLISNKIEIDRSNAE 406
>UNIPROTKB|O73932 [details] [associations]
symbol:igf2bp3-a "Insulin-like growth factor 2 mRNA-binding
protein 3-A" species:8355 "Xenopus laevis" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS;IDA] [GO:0030529 "ribonucleoprotein complex"
evidence=IPI] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005783 GO:GO:0007275 GO:GO:0005634 GO:GO:0006417
GO:GO:0006355 GO:GO:0000166 GO:GO:0003677 Gene3D:3.30.70.330
GO:GO:0006351 GO:GO:0003730 GO:GO:0030529 GO:GO:0051028
EMBL:AF055923 EMBL:AF064634 EMBL:BC170196 EMBL:BC170224
EMBL:BC170477 EMBL:BC170479 RefSeq:NP_001081752.1 UniGene:Xl.319
HSSP:Q9Y6M1 ProteinModelPortal:O73932 SMR:O73932 IntAct:O73932
PRIDE:O73932 GeneID:394293 KEGG:xla:394293 CTD:394293
Xenbase:XB-GENE-864935 HOVERGEN:HBG052725 KO:K13197 Uniprot:O73932
Length = 594
Score = 129 (50.5 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 89/433 (20%), Positives = 173/433 (39%)
Query: 23 GGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET 82
G +++ +PG + + R L P + + +T+S I I
Sbjct: 187 GPARQGSPGAAARPKP--QTEVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRK 244
Query: 83 V-PGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLI 141
G E+ +TI+S+ EG + A ++ I+ +++ D +F E I
Sbjct: 245 ENAGAAEKPITIHSTPEGCS--------------AACKIIMEIMQKEA-QDTKFTEE--I 287
Query: 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAV 201
+++L + +G +IGK G+ ++ I +T +I I + L L + + + V G
Sbjct: 288 PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTL--YNPERTITVKGSIEP 345
Query: 202 VRKALVQIASRL---HENPXXXXXXXXXX-------XXNIYQSSGVYLSAPLVG-----S 246
KA +I ++ +EN ++ SS + P VG S
Sbjct: 346 CAKAEEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPSSSSGMPPPSVGVPSPTS 405
Query: 247 YGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDD 306
+Y + + ++ L PA + +GASIK+ + AEG D
Sbjct: 406 STSYPPFGQQPESE--TVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI--APAEGPD 461
Query: 307 CIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-ITTRILVPSAQIGCLIGRG 365
+ + P A R+ + E+ + V + T I VPS G +IG+G
Sbjct: 462 AKLRMVI--ITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLETHIKVPSYAAGRVIGKG 519
Query: 366 GAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSL---DVASSALSQVTLRLRAN 422
G ++E+++ T A + ++ + P DE +V+ITG +A + ++ ++R
Sbjct: 520 GKTVNELQNLTSAEV-VVPRDQTPDE--NDEVVVKITGHFYASQLAQRKIQEILAQVRRQ 576
Query: 423 TFEREGALAAHPP 435
+++ + + P
Sbjct: 577 QQQQQKTVQSGQP 589
>ZFIN|ZDB-GENE-060503-536 [details] [associations]
symbol:igf2bp2b "insulin-like growth factor 2 mRNA
binding protein 2b" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-060503-536
GO:GO:0003723 EMBL:CR382370 GeneTree:ENSGT00530000063171
EMBL:BX004885 IPI:IPI00919570 PRIDE:F1QN87
Ensembl:ENSDART00000088166 Bgee:F1QN87 Uniprot:F1QN87
Length = 446
Score = 90 (36.7 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 34/107 (31%), Positives = 48/107 (44%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G LIG+ G I E+ ASI+I E+ P E E MV ITG +
Sbjct: 277 LFIPTPAVGALIGKKGQHIKELAHFAGASIKIAAPES-PD---EPERMVIITGPPEAQFK 332
Query: 411 ALSQVTLRLRANTF---EREGALAAHPPVLPYVPMSLDITDGSKYGN 454
A ++ +L+ F + E L AH V P I G K N
Sbjct: 333 AQGRIYGKLKEENFFTAKEEVKLEAHIKV-PSTAAGRVIGKGGKTVN 378
Score = 81 (33.6 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 15/41 (36%), Positives = 28/41 (68%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+ +R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 60 LPLRILVPTQFVGAIIGKEGLTIKNITKQTQSKVDIHRKEN 100
>TAIR|locus:2012713 [details] [associations]
symbol:AT1G33680 "AT1G33680" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0005829 "cytosol" evidence=IDA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF13014 PROSITE:PS50084 SMART:SM00322
EMBL:CP002684 GenomeReviews:CT485782_GR GO:GO:0005829 GO:GO:0003723
eggNOG:NOG300923 KO:K13210 UniGene:At.39892 UniGene:At.71035
HOGENOM:HOG000242545 EMBL:AK229850 EMBL:AK229909 EMBL:AK230055
IPI:IPI00786006 RefSeq:NP_174629.3 ProteinModelPortal:Q0WLY0
SMR:Q0WLY0 STRING:Q0WLY0 PaxDb:Q0WLY0 PRIDE:Q0WLY0
EnsemblPlants:AT1G33680.1 GeneID:840259 KEGG:ath:AT1G33680
TAIR:At1g33680 InParanoid:Q0WLY0 OMA:PSYGSTP PhylomeDB:Q0WLY0
ProtClustDB:CLSN2690290 Genevestigator:Q0WLY0 Uniprot:Q0WLY0
Length = 763
Score = 90 (36.7 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 23/68 (33%), Positives = 41/68 (60%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGS---LDV 407
I VPS ++G +IGRGG I M++ +RA I+++ +N + E V+I+G +D+
Sbjct: 324 IKVPSDKVGVIIGRGGETIKNMQTKSRARIQLIP-QNEGDAS--KERTVRISGDKRQIDI 380
Query: 408 ASSALSQV 415
A++ + V
Sbjct: 381 ATALIKDV 388
Score = 86 (35.3 bits), Expect = 8.5e-05, Sum P(2) = 8.5e-05
Identities = 21/65 (32%), Positives = 41/65 (63%)
Query: 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKD-EHLPLCALSFDELLQVAGEPA 200
T R+ VP+ ++G +IGKGG++++ ++ + A+I+I +D E P AL +++ G +
Sbjct: 233 TRRIDVPSSKVGTLIGKGGEMVRYLQVNSGAKIQIRRDAEADPSSAL---RPVEIIGTVS 289
Query: 201 VVRKA 205
+ KA
Sbjct: 290 CIEKA 294
>UNIPROTKB|K7GQ87 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035397 Uniprot:K7GQ87
Length = 498
Score = 91 (37.1 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 356 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 407
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 408 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 463
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 464 FFASQTAQRKI 474
Score = 87 (35.7 bits), Expect = 0.00026, Sum P(2) = 0.00026
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 331 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 386
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 387 AQGRIFGKLKEENFFNPKEEVKLEAH 412
Score = 80 (33.2 bits), Expect = 9.7e-05, Sum P(2) = 9.7e-05
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 95 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 133
Score = 59 (25.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 174 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 231
Query: 201 VVRKALVQIASRLHE 215
A ++I +L E
Sbjct: 232 ACANAEIEIMKKLRE 246
Score = 56 (24.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 82 PGGSSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 138
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 139 KPVTIHATPEGTS 151
>UNIPROTKB|K7GKD3 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000033522 Uniprot:K7GKD3
Length = 520
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 378 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 429
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 430 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 485
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 486 FFASQTAQRKI 496
Score = 87 (35.7 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 353 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 408
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 409 AQGRIFGKLKEENFFNPKEEVKLEAH 434
Score = 80 (33.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 117 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 155
Score = 59 (25.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 196 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 253
Query: 201 VVRKALVQIASRLHE 215
A ++I +L E
Sbjct: 254 ACANAEIEIMKKLRE 268
Score = 56 (24.8 bits), Expect = 0.00026, Sum P(3) = 0.00026
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 104 PGGSSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 160
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 161 KPVTIHATPEGTS 173
>UNIPROTKB|F1SFK0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:CU582974 Ensembl:ENSSSCT00000012907
Uniprot:F1SFK0
Length = 524
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 382 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 433
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 434 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 489
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 490 FFASQTAQRKI 500
Score = 87 (35.7 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 357 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 412
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 413 AQGRIFGKLKEENFFNPKEEVKLEAH 438
Score = 80 (33.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 121 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 159
Score = 59 (25.8 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 200 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 257
Query: 201 VVRKALVQIASRLHE 215
A ++I +L E
Sbjct: 258 ACANAEIEIMKKLRE 272
Score = 56 (24.8 bits), Expect = 0.00027, Sum P(3) = 0.00027
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 108 PGGSSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 164
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 165 KPVTIHATPEGTS 177
>UNIPROTKB|F1PDI8 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GeneTree:ENSGT00530000063171 CTD:10644 OMA:KQQEQKH
EMBL:AAEX03017290 EMBL:AAEX03017291 EMBL:AAEX03017292
RefSeq:XP_535832.3 Ensembl:ENSCAFT00000021148 GeneID:478662
KEGG:cfa:478662 Uniprot:F1PDI8
Length = 531
Score = 91 (37.1 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 389 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 440
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 441 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 496
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 497 FFASQTAQRKI 507
Score = 87 (35.7 bits), Expect = 0.00061, Sum P(3) = 0.00060
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 364 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 419
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 420 AQGRIFGKLKEENFFNPKEEVKLEAH 445
Score = 80 (33.2 bits), Expect = 0.00011, Sum P(2) = 0.00011
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 128 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 166
Score = 60 (26.2 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 20/75 (26%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 207 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 264
Query: 201 VVRKALVQIASRLHE 215
A V+I +L E
Sbjct: 265 ACANAEVEIMKKLRE 279
Score = 56 (24.8 bits), Expect = 0.00022, Sum P(3) = 0.00022
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 115 PGGSSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 171
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 172 KPVTIHATPEGTS 184
>WB|WBGene00016489 [details] [associations]
symbol:C36E6.1 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096
Pfam:PF09005 GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080802
GeneID:181773 KEGG:cel:CELE_C36E6.1 CTD:181773 HOGENOM:HOG000018892
RefSeq:NP_510825.1 ProteinModelPortal:Q9BLA0 SMR:Q9BLA0
STRING:Q9BLA0 PaxDb:Q9BLA0 PRIDE:Q9BLA0 EnsemblMetazoa:C36E6.1b
UCSC:C36E6.1a WormBase:C36E6.1b InParanoid:Q9BLA0 OMA:IQLIQEN
NextBio:915282 ArrayExpress:Q9BLA0 Uniprot:Q9BLA0
Length = 641
Score = 104 (41.7 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 21/78 (26%), Positives = 47/78 (60%)
Query: 136 GELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQV 195
G+ + IT+ + +PA++ G +IGKGG+ ++ +R+ T +++L+D ++ + L++
Sbjct: 152 GDPSKITIEIPIPANKCGAIIGKGGEQMRKLRSWTNCNVQLLQDNNIADTV----KPLKI 207
Query: 196 AGEPAVVRKALVQIASRL 213
G+P V + + +A L
Sbjct: 208 TGDPKQVEQCRLLVADIL 225
Score = 68 (29.0 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 13/52 (25%), Positives = 27/52 (51%)
Query: 336 EKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNEN 387
E + PV+ +++P+++ G +IGRGG I ++ + A + + N
Sbjct: 315 EANSEAANAPVVLFYMVIPASKCGLVIGRGGETIKQINQESGAHCELSRDPN 366
>FB|FBgn0015907 [details] [associations]
symbol:bl "bancal" species:7227 "Drosophila melanogaster"
[GO:0030529 "ribonucleoprotein complex" evidence=ISS] [GO:0003729
"mRNA binding" evidence=NAS;TAS] [GO:0005634 "nucleus"
evidence=IC;IDA;TAS] [GO:0035062 "omega speckle" evidence=IDA]
[GO:0000785 "chromatin" evidence=IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008283 "cell proliferation" evidence=TAS]
[GO:0045165 "cell fate commitment" evidence=TAS] [GO:0005737
"cytoplasm" evidence=TAS] [GO:0007446 "imaginal disc growth"
evidence=TAS] [GO:0008134 "transcription factor binding"
evidence=TAS] [GO:0035107 "appendage morphogenesis" evidence=TAS]
[GO:0000381 "regulation of alternative mRNA splicing, via
spliceosome" evidence=IMP] InterPro:IPR004087 InterPro:IPR004088
Pfam:PF00013 PROSITE:PS50084 SMART:SM00322 GO:GO:0005737
GO:GO:0008283 GO:GO:0003729 GO:GO:0000785 GO:GO:0030529
GO:GO:0008134 GO:GO:0045165 GO:GO:0000381 GO:GO:0007446 HSSP:P61978
GO:GO:0035062 FlyBase:FBgn0015907 ChiTaRS:bl GO:GO:0035107
EMBL:AF275629 ProteinModelPortal:Q7KHL0 SMR:Q7KHL0 STRING:Q7KHL0
PRIDE:Q7KHL0 InParanoid:Q7KHL0 ArrayExpress:Q7KHL0 Bgee:Q7KHL0
Uniprot:Q7KHL0
Length = 508
Score = 95 (38.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/35 (51%), Positives = 26/35 (74%)
Query: 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRI 176
TVR+L+P+ G VIGKGGQ IQ +RT+ +A + +
Sbjct: 24 TVRILIPSSIAGAVIGKGGQHIQKMRTQYKATVSV 58
Score = 95 (38.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 26/75 (34%), Positives = 40/75 (53%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVV 202
VR+L+ GCVIGKGGQ I+ IR R R LK + S D ++Q G+ + V
Sbjct: 97 VRLLIHQSLAGCVIGKGGQKIKEIRD--RIGCRFLK-VFSNVAPQSTDRVVQTVGKQSQV 153
Query: 203 RKALVQIASRLHENP 217
+A+ ++ + + P
Sbjct: 154 IEAVREVITLTRDTP 168
Score = 75 (31.5 bits), Expect = 0.00012, Sum P(2) = 0.00012
Identities = 18/61 (29%), Positives = 35/61 (57%)
Query: 344 DPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG 403
DP +T++ +P G +IG+GG I +R+ + A I I +E +P ++ ++ I+G
Sbjct: 418 DPNNSTQVTIPKELAGAIIGKGGGRIRRIRNESSAYITI--DEPLPN---SNDRIITISG 472
Query: 404 S 404
+
Sbjct: 473 T 473
>UNIPROTKB|F1NYJ3 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00650000093048 EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00819889
Ensembl:ENSGALT00000006277 ArrayExpress:F1NYJ3 Uniprot:F1NYJ3
Length = 508
Score = 108 (43.1 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 29/108 (26%), Positives = 57/108 (52%)
Query: 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIR 167
E + A+ L ++ DR +D G T+ + L+PA ++G VIGKGG+ I+ ++
Sbjct: 121 ESIEQAKRLLGQIVDRCRNGPGFHNDVDGNSTIQEI--LIPASKVGLVIGKGGETIKQLQ 178
Query: 168 TETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215
T ++ +++D +P A D+ L++ G+ V++A + + E
Sbjct: 179 ERTGVKMIMIQDGPMPTGA---DKPLRITGDAFKVQQAREMVLEIIRE 223
Score = 61 (26.5 bits), Expect = 0.00013, Sum P(2) = 0.00013
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P E + Q+ G D
Sbjct: 247 VSVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPERVAQVMGLPDRCQH 301
Query: 411 ALSQVTLRLRANTFEREG 428
A + + L ER+G
Sbjct: 302 A-AHIISELILTAQERDG 318
>UNIPROTKB|F1M8T3 [details] [associations]
symbol:F1M8T3 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723
GeneTree:ENSGT00550000074311 IPI:IPI00780141
Ensembl:ENSRNOT00000055638 OMA:SISEGNC Uniprot:F1M8T3
Length = 214
Score = 117 (46.2 bits), Expect = 0.00014, P = 0.00014
Identities = 41/142 (28%), Positives = 68/142 (47%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R E+ + I ISE C ERI+T+ TN F+ + ++ +
Sbjct: 28 KMRKESGARISISEG--NCPERIITLAGP---TN-FKSFAMIIDKLEEDI---------S 72
Query: 128 DSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187
S+ + +TV ++VPA Q G +IGKGG I+ IR T Q+++ D LP
Sbjct: 73 SSMTNSTAASRPRVTVWLVVPASQCGSLIGKGGCKIKEIRESTGVQVQVAGDM-LPN--- 128
Query: 188 SFDELLQVAGEPAVVRKALVQI 209
S + + +AG P + + + QI
Sbjct: 129 STERAITIAGIPQSIIECVKQI 150
>UNIPROTKB|F1NVW3 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0044430 "cytoskeletal part" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171
GO:GO:0044430 OMA:KQQEQKH EMBL:AADN02024285 EMBL:AADN02024286
IPI:IPI00581668 Ensembl:ENSGALT00000022629 Uniprot:F1NVW3
Length = 573
Score = 89 (36.4 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 37/129 (28%), Positives = 63/129 (48%)
Query: 291 SGASIKVDSSGAEGDDCI--IFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-I 347
+GASIK+ + AEG D + I T P A R+ + E+ + V +
Sbjct: 430 AGASIKI--APAEGPDATERMVIITGP----PEAQFKAQGRIFGKLKEENFFNPKEEVKL 483
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGSLD 406
I VPS G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 484 EAHIKVPSFAAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVKIIGHFF 539
Query: 407 VASSALSQV 415
+ +A ++
Sbjct: 540 ASQTAQRKI 548
Score = 82 (33.9 bits), Expect = 0.00014, Sum P(2) = 0.00014
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+RMLVP +G +IGK G I+N+ +T++++ I + E+
Sbjct: 169 LRMLVPTQFVGAIIGKEGLTIKNLTKQTQSKVDIHRKEN 207
>UNIPROTKB|Q5ZLP8 [details] [associations]
symbol:IGF2BP3 "Insulin-like growth factor 2 mRNA-binding
protein 3" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0006417 "regulation of translation"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=IEA] [GO:0003730 "mRNA 3'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T EMBL:AJ719686
IPI:IPI00594271 RefSeq:NP_001006359.1 UniGene:Gga.4039
ProteinModelPortal:Q5ZLP8 SMR:Q5ZLP8 PRIDE:Q5ZLP8
Ensembl:ENSGALT00000017840 GeneID:420617 KEGG:gga:420617 CTD:10643
InParanoid:Q5ZLP8 OMA:EAQDTKF NextBio:20823504 Uniprot:Q5ZLP8
Length = 584
Score = 125 (49.1 bits), Expect = 0.00015, P = 0.00015
Identities = 89/430 (20%), Positives = 168/430 (39%)
Query: 23 GGSKRRNPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISET 82
G ++ +P T Q+ D R L P + + +T+S I I
Sbjct: 178 GPPRQGSPSATTRQKP--QSDVPLRMLVPTQFVGAIIGKEGATIRNITKQTQSKIDIHRK 235
Query: 83 V-PGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLI 141
G E+ +TI+S+ EG S A + + + A+D+ +E I
Sbjct: 236 ENAGAAEKPITIHSTPEGC----------STACKIIMEIMQK-EAQDTKFTEE------I 278
Query: 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAV 201
+++L + +G +IGK G+ ++ I +T +I I + L L + + + V G
Sbjct: 279 PLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTL--YNPERTITVKGSIET 336
Query: 202 VRKALVQIASRL---HENPXXXXXXXXXXXXNIY---------QSSGVYLSAPLVGSYGN 249
KA +I ++ +EN + SSG+ A V S
Sbjct: 337 CAKAEEEIMKKIRESYENDIAAMNLQAHLIPGLNLNALGLFPPSSSGIPPPAVSVASAAA 396
Query: 250 YSARRDEASAREF-SLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCI 308
++ E ++ L PA + +GASIK+ + AEG D
Sbjct: 397 AASYPPFGQQPESETVHLFIPALAVGAIIGKQGQHIKQLSRFAGASIKI--APAEGPDAK 454
Query: 309 IFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-ITTRILVPSAQIGCLIGRGGA 367
+ + P A R+ + E+ + V + I VPS G +IG+GG
Sbjct: 455 LRMVI--ITGPPEAQFKAQGRIYGKLKEENFFGPKEEVKLEAHIKVPSYAAGRVIGKGGK 512
Query: 368 IISEMRSATRASIRILTNENVPKVAYEDEEMVQITG---SLDVASSALSQVTLRLRANTF 424
++E+++ T A + ++ + P D+ +V+ITG + +A + ++ ++R
Sbjct: 513 TVNELQNLTSAEV-VVPRDQTPDE--NDQVVVKITGHFYACQLAQRKIQEILAQVRRQQQ 569
Query: 425 EREGALAAHP 434
+++ + P
Sbjct: 570 QQKTLQSGQP 579
>UNIPROTKB|F1NGC0 [details] [associations]
symbol:FUBP3 "Uncharacterized protein" species:9031 "Gallus
gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005737 "cytoplasm" evidence=IEA]
[GO:0006351 "transcription, DNA-dependent" evidence=IEA]
[GO:0045893 "positive regulation of transcription, DNA-dependent"
evidence=IEA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005634 GO:GO:0005737
GO:GO:0045893 GO:GO:0006351 GO:GO:0003723
GeneTree:ENSGT00650000093048 OMA:AAPHQNT EMBL:AADN02026565
EMBL:AADN02026566 EMBL:AADN02026567 EMBL:AADN02026568
EMBL:AADN02026569 EMBL:AADN02026570 IPI:IPI00578263
Ensembl:ENSGALT00000039554 ArrayExpress:F1NGC0 Uniprot:F1NGC0
Length = 539
Score = 108 (43.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 29/108 (26%), Positives = 57/108 (52%)
Query: 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIR 167
E + A+ L ++ DR +D G T+ + L+PA ++G VIGKGG+ I+ ++
Sbjct: 150 ESIEQAKRLLGQIVDRCRNGPGFHNDVDGNSTIQEI--LIPASKVGLVIGKGGETIKQLQ 207
Query: 168 TETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215
T ++ +++D +P A D+ L++ G+ V++A + + E
Sbjct: 208 ERTGVKMIMIQDGPMPTGA---DKPLRITGDAFKVQQAREMVLEIIRE 252
Score = 61 (26.5 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 21/78 (26%), Positives = 36/78 (46%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P E + Q+ G D
Sbjct: 276 VSVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPERVAQVMGLPDRCQH 330
Query: 411 ALSQVTLRLRANTFEREG 428
A + + L ER+G
Sbjct: 331 A-AHIISELILTAQERDG 347
>MGI|MGI:1890358 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISO] [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
MGI:MGI:1890358 GO:GO:0005634 GO:GO:0005737 GO:GO:0006417
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0048027 GO:GO:0003730
HOVERGEN:HBG052725 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 CTD:10644 OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2
GO:GO:0044430 EMBL:AY531659 EMBL:AK170531 EMBL:CT009567
IPI:IPI00338748 IPI:IPI00761863 RefSeq:NP_898850.2
UniGene:Mm.489442 ProteinModelPortal:Q5SF07 SMR:Q5SF07
STRING:Q5SF07 PhosphoSite:Q5SF07 REPRODUCTION-2DPAGE:Q5SF07
PaxDb:Q5SF07 PRIDE:Q5SF07 Ensembl:ENSMUST00000100052 GeneID:319765
KEGG:mmu:319765 UCSC:uc007yrz.1 UCSC:uc007ysb.1 InParanoid:A6X8Z4
OMA:KQQEQKH NextBio:395368 Bgee:Q5SF07 Genevestigator:Q5SF07
GermOnline:ENSMUSG00000033581 Uniprot:Q5SF07
Length = 592
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEA 477
Query: 408 ASSALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 478 QFKAQGRIFGKLKEENFFNPKEEVKLEAH 506
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 450 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 501
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 502 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 557
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 558 FFASQTAQRKI 568
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 189 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 227
Score = 57 (25.1 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 176 PGSSSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 232
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 233 KPVTIHATPEGTS 245
Score = 56 (24.8 bits), Expect = 0.00065, Sum P(3) = 0.00065
Identities = 18/75 (24%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
+ +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 268 VPLKILAHNGFVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVRGTIE 325
Query: 201 VVRKALVQIASRLHE 215
A ++I +L E
Sbjct: 326 ACANAEIEIMKKLRE 340
>RGD|1305614 [details] [associations]
symbol:Igf2bp2 "insulin-like growth factor 2 mRNA binding
protein 2" species:10116 "Rattus norvegicus" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003730 "mRNA 3'-UTR
binding" evidence=IEA;ISO] [GO:0005634 "nucleus" evidence=IEA;ISO]
[GO:0005737 "cytoplasm" evidence=IEA;ISO] [GO:0005856
"cytoskeleton" evidence=ISO] [GO:0044430 "cytoskeletal part"
evidence=IEA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA;ISO]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:1305614
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 EMBL:CH473999
GeneTree:ENSGT00530000063171 CTD:10644 OrthoDB:EOG4FBHSJ
GO:GO:0044430 IPI:IPI00559516 RefSeq:NP_001257527.1
UniGene:Rn.17318 Ensembl:ENSRNOT00000036958 GeneID:303824
KEGG:rno:303824 UCSC:RGD:1305614 NextBio:652153 Uniprot:D3ZWZ6
Length = 592
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 28/89 (31%), Positives = 44/89 (49%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 422 TVSLFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEA 477
Query: 408 ASSALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 478 QFKAQGRIFGKLKEENFFNPKEEVKLEAH 506
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 450 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 501
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 502 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 557
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 558 FFASQTAQRKI 568
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 189 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 227
>UNIPROTKB|E1BFI4 [details] [associations]
symbol:IGF2BP2 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0044430
"cytoskeletal part" evidence=IEA] [GO:0005737 "cytoplasm"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 GeneTree:ENSGT00530000063171 CTD:10644
GO:GO:0044430 OMA:KQQEQKH EMBL:DAAA02001852 EMBL:DAAA02001853
EMBL:DAAA02001854 EMBL:DAAA02001855 EMBL:DAAA02001856
IPI:IPI00721408 RefSeq:NP_001179433.1 UniGene:Bt.33805
ProteinModelPortal:E1BFI4 Ensembl:ENSBTAT00000036032 GeneID:519028
KEGG:bta:519028 NextBio:20872792 Uniprot:E1BFI4
Length = 599
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 457 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 508
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 509 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 564
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 565 FFASQTAQRKI 575
Score = 87 (35.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 487
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 488 AQGRIFGKLKEENFFNPKEEVKLEAH 513
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 196 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Score = 59 (25.8 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 275 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 332
Query: 201 VVRKALVQIASRLHE 215
A ++I +L E
Sbjct: 333 ACANAEIEIMKKLRE 347
Score = 56 (24.8 bits), Expect = 0.00043, Sum P(3) = 0.00043
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 183 PGGSSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 239
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 240 KPVTIHATPEGTS 252
>UNIPROTKB|Q9Y6M1 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA] [GO:0009653
"anatomical structure morphogenesis" evidence=TAS] [GO:0005829
"cytosol" evidence=TAS] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005856 "cytoskeleton"
evidence=IDA] [GO:0048027 "mRNA 5'-UTR binding" evidence=IDA]
[GO:0017148 "negative regulation of translation" evidence=ISS]
[GO:0045182 "translation regulator activity" evidence=ISS]
[GO:0042035 "regulation of cytokine biosynthetic process"
evidence=IC] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
GO:GO:0005829 GO:GO:0005634 Reactome:REACT_116125 GO:GO:0017148
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182 GO:GO:0048027
GO:GO:0003730 GO:GO:0042035 GO:GO:0009653 HOVERGEN:HBG052725
eggNOG:NOG249985 HOGENOM:HOG000000675 EMBL:AF057352 EMBL:EU408701
EMBL:EU408702 EMBL:EU408703 EMBL:AC016961 EMBL:AC108670
EMBL:BC021290 IPI:IPI00179713 IPI:IPI00180983 IPI:IPI00743914
IPI:IPI00922068 IPI:IPI00953576 RefSeq:NP_001007226.1
RefSeq:NP_006539.3 UniGene:Hs.35354 PDB:2CQH PDBsum:2CQH
ProteinModelPortal:Q9Y6M1 SMR:Q9Y6M1 IntAct:Q9Y6M1 STRING:Q9Y6M1
PhosphoSite:Q9Y6M1 DMDM:224471831 PaxDb:Q9Y6M1 PRIDE:Q9Y6M1
DNASU:10644 Ensembl:ENST00000346192 Ensembl:ENST00000382199
Ensembl:ENST00000421047 GeneID:10644 KEGG:hsa:10644 UCSC:uc003fpo.3
UCSC:uc003fpp.3 UCSC:uc010hyi.3 UCSC:uc010hyj.3 UCSC:uc010hyl.3
CTD:10644 GeneCards:GC03M185361 HGNC:HGNC:28867 HPA:CAB017126
MIM:608289 neXtProt:NX_Q9Y6M1 PharmGKB:PA128394577
OrthoDB:EOG4FBHSJ ChiTaRS:IGF2BP2 EvolutionaryTrace:Q9Y6M1
GenomeRNAi:10644 NextBio:40455 ArrayExpress:Q9Y6M1 Bgee:Q9Y6M1
CleanEx:HS_IGF2BP2 Genevestigator:Q9Y6M1 GermOnline:ENSG00000073792
GO:GO:0044430 Uniprot:Q9Y6M1
Length = 599
Score = 91 (37.1 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 457 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 508
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 509 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 564
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 565 FFASQTAQRKI 575
Score = 87 (35.7 bits), Expect = 0.00041, Sum P(2) = 0.00041
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 432 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 487
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 488 AQGRIFGKLKEENFFNPKEEVKLEAH 513
Score = 80 (33.2 bits), Expect = 0.00015, Sum P(2) = 0.00015
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 196 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Score = 59 (25.8 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 275 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 332
Query: 201 VVRKALVQIASRLHE 215
A ++I +L E
Sbjct: 333 ACASAEIEIMKKLRE 347
Score = 55 (24.4 bits), Expect = 0.00054, Sum P(3) = 0.00054
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 183 PGGTSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 239
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 240 KPVTIHATPEGTS 252
>UNIPROTKB|F8W930 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9606 "Homo sapiens" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC016961 EMBL:AC108670
IPI:IPI00953576 HGNC:HGNC:28867 ChiTaRS:IGF2BP2 OMA:KQQEQKH
ProteinModelPortal:F8W930 SMR:F8W930 PRIDE:F8W930
Ensembl:ENST00000457616 UCSC:uc003fpq.3 ArrayExpress:F8W930
Bgee:F8W930 Uniprot:F8W930
Length = 605
Score = 91 (37.1 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 38/131 (29%), Positives = 66/131 (50%)
Query: 291 SGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESG-DPV--- 346
+GASIK+ + AEG D +S + P A + Q R K + E+ +P
Sbjct: 463 AGASIKI--APAEGPD----VSERMVIITGPPE--AQFKAQGRIFGKLKEENFFNPKEEV 514
Query: 347 -ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGS 404
+ I VPS+ G +IG+GG ++E+++ T A + I+ + P E+EE+ V+I G
Sbjct: 515 KLEAHIRVPSSTAGRVIGKGGKTVNELQNLTSAEV-IVPRDQTPD---ENEEVIVRIIGH 570
Query: 405 LDVASSALSQV 415
+ +A ++
Sbjct: 571 FFASQTAQRKI 581
Score = 87 (35.7 bits), Expect = 0.00042, Sum P(2) = 0.00042
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 438 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 493
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 494 AQGRIFGKLKEENFFNPKEEVKLEAH 519
Score = 80 (33.2 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 202 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 240
Score = 59 (25.8 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 19/75 (25%), Positives = 36/75 (48%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 281 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 338
Query: 201 VVRKALVQIASRLHE 215
A ++I +L E
Sbjct: 339 ACASAEIEIMKKLRE 353
Score = 55 (24.4 bits), Expect = 0.00056, Sum P(3) = 0.00056
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 189 PGGTSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 245
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 246 KPVTIHATPEGTS 258
>WB|WBGene00022738 [details] [associations]
symbol:ZK418.9 species:6239 "Caenorhabditis elegans"
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 eggNOG:NOG300923 InterPro:IPR015096 Pfam:PF09005
GeneTree:ENSGT00650000093048 HSSP:Q96AE4 EMBL:FO080150
HOGENOM:HOG000018892 PIR:T27855 RefSeq:NP_001023000.1
ProteinModelPortal:Q23487 SMR:Q23487 STRING:Q23487 PaxDb:Q23487
PRIDE:Q23487 EnsemblMetazoa:ZK418.9a GeneID:175989
KEGG:cel:CELE_ZK418.9 UCSC:ZK418.9b.2 CTD:175989 WormBase:ZK418.9a
InParanoid:Q23487 OMA:NCTIEGP NextBio:890626 ArrayExpress:Q23487
Uniprot:Q23487
Length = 557
Score = 124 (48.7 bits), Expect = 0.00017, P = 0.00017
Identities = 74/338 (21%), Positives = 135/338 (39%)
Query: 75 SNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFR-VHDRIVAEDSLADD 133
S IR+ + GC ++ + S G G P Q A+ R + +++ +
Sbjct: 74 SEIRLIQQTSGCRVQMDPDHQSVNGFRNCTIEGP---PDQVAVARQMITQVINRNQTGAQ 130
Query: 134 EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193
+T ML+PAD+IG VIGKGG+ I+ ++ ++ + + E A + L
Sbjct: 131 PGAAPGEVTEEMLIPADKIGLVIGKGGETIRIVQEQSGLRNCNVVQE--TTTATGQPKPL 188
Query: 194 QVAGEPAVVRKALVQIASRLHENPXXXXXXXXXXXXNIYQSSGVYLSAPLVGSYGNYSAR 253
++ G PA + A + + ++ +Q SG + G G Y A+
Sbjct: 189 RMIGSPAAIETAKALVHNIMNNTQGNAPLLQRAP----HQPSGQF------G--GGYGAQ 236
Query: 254 RDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASI--KVDSSGAEGDDCIIFI 311
EA A+ ++ P E+G I K D++ D + +
Sbjct: 237 --EAQAKG---EVIVPRLSAGMIIGKGGEMIKRLAAETGTKIQFKPDTNPNSEDRIAVIM 291
Query: 312 STKEFFEDPSPTITAAL-RLQPRCSEKTERESGDPVITTRIL----VPSAQIGCLIGRGG 366
T++ + IT + R +R S V+ + + VP+ + G +IG+GG
Sbjct: 292 GTRDQIYRATERITEIVNRAIKNNGAPQDRGSAGTVLPGQSIFYMHVPAGKCGLVIGKGG 351
Query: 367 AIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGS 404
I ++ T A+ + + EDE++ +I GS
Sbjct: 352 ENIKQIERETGATCGLAP---AAEQKNEDEKVFEIKGS 386
>UNIPROTKB|E1B8C6 [details] [associations]
symbol:E1B8C6 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
GO:GO:0003723 GeneTree:ENSGT00550000074311 EMBL:DAAA02008155
IPI:IPI00701183 Ensembl:ENSBTAT00000038517 OMA:YLINARE
Uniprot:E1B8C6
Length = 116
Score = 100 (40.3 bits), Expect = 0.00018, P = 0.00018
Identities = 29/76 (38%), Positives = 42/76 (55%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T + +P+ IGC+IGR GA I+E+R +RA I+I P V V ITGS
Sbjct: 41 THELTIPNNLIGCIIGRQGANINEIRQMSRAQIKIAN----P-VEGSSGRQVTITGS--A 93
Query: 408 ASSALSQVTLRLRANT 423
AS +L+Q + R ++
Sbjct: 94 ASISLAQYLINARLSS 109
>UNIPROTKB|C9JZY3 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00984041 ProteinModelPortal:C9JZY3 SMR:C9JZY3
STRING:C9JZY3 Ensembl:ENST00000468324 ArrayExpress:C9JZY3
Bgee:C9JZY3 Uniprot:C9JZY3
Length = 168
Score = 111 (44.1 bits), Expect = 0.00019, P = 0.00019
Identities = 42/146 (28%), Positives = 72/146 (49%)
Query: 68 QLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAE 127
++R ++ + I ISE C ERI TI S+ F + + A F++ + + A
Sbjct: 42 RIREQSSARITISEG--SCPERITTITGSTAAV--------FHAVSMIA-FKLDEDLCA- 89
Query: 128 DSLADDEFGELTL--ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
A G ++ +T+R+++PA Q G +IGK G I+ IR T AQ+++ D L
Sbjct: 90 ---APANGGNVSRPPVTLRLVIPASQCGSLIGKAGTKIKEIRETTGAQVQVAGD----LL 142
Query: 186 ALSFDELLQVAGEPAVVRKALVQIAS 211
S + + V+G P + + QI +
Sbjct: 143 PNSTERAVTVSGVPDAIILCVRQICA 168
>UNIPROTKB|K7GQW0 [details] [associations]
symbol:RFC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 Gene3D:3.30.70.330
GeneTree:ENSGT00530000063171 EMBL:CU582974
Ensembl:ENSSSCT00000035698 Uniprot:K7GQW0
Length = 477
Score = 110 (43.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 65/281 (23%), Positives = 117/281 (41%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 196 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 253
Query: 201 VVRKALVQIASRLHENPXXXXXXXXXXXXNIYQSSGVYLSAPLVGSYGNYSARRDEASAR 260
A ++I +L E N + SG + S +G + +
Sbjct: 254 ACANAEIEIMKKLRE-----AFENDMLAVNTH--SGYFSSLYPPHQFGPFPHHHSYPE-Q 305
Query: 261 EFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIFISTKEFFEDP 320
E + L P + +GASIK+ + AEG D +S +
Sbjct: 306 EI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVIITG 358
Query: 321 SPTITAALRLQPRCSEKTERESG-DPV----ITTRILVPSAQIGCLIGRGGAIISEMRSA 375
P A + Q R K + E+ +P + I VPS+ G +IG+GG ++E+++
Sbjct: 359 PPE--AQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNL 416
Query: 376 TRASIRILTNENVPKVAYEDEEM-VQITGSLDVASSALSQV 415
T A + I+ + P E+EE+ V+I G + +A ++
Sbjct: 417 TSAEV-IVPRDQTPD---ENEEVIVRIIGHFFASQTAQRKI 453
Score = 87 (35.7 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 310 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 365
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 366 AQGRIFGKLKEENFFNPKEEVKLEAH 391
Score = 80 (33.2 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 117 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 155
Score = 56 (24.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 104 PGGSSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 160
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 161 KPVTIHATPEGTS 173
>UNIPROTKB|F1LU04 [details] [associations]
symbol:F1LU04 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 IPI:IPI00777998
Ensembl:ENSRNOT00000016081 Uniprot:F1LU04
Length = 358
Score = 88 (36.0 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 26/73 (35%), Positives = 38/73 (52%)
Query: 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407
T+ L P+ IGC+IGR GA I+E+ + A I+I E + V ITG
Sbjct: 283 TSHELTPNDLIGCIIGRQGAKINEIHQMSGAQIKIANPEG------STDRQVTITGP--A 334
Query: 408 ASSALSQVTLRLR 420
AS +L+Q + +R
Sbjct: 335 ASISLAQYLINVR 347
Score = 76 (31.8 bits), Expect = 0.00021, Sum P(2) = 0.00021
Identities = 37/140 (26%), Positives = 63/140 (45%)
Query: 70 RSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDS 129
R E+ +++ ISE C ERI+T+ + T F + A L R + +
Sbjct: 51 REESGAHLNISEG--NCPERIITLAGPTNAT--------FKAFAMIKLEEDRSRSMTNST 100
Query: 130 LADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSF 189
A +T R++VP Q G +IGKG I+ + ET +++ D LP S
Sbjct: 101 AASRP------VTSRLVVPDSQCGSLIGKGICKIKEVG-ETTGPVQVAGDM-LPN---SS 149
Query: 190 DELLQVAGEPAVVRKALVQI 209
++ + +A P + + + QI
Sbjct: 150 EQAIPIASIPQSIIECVNQI 169
>TAIR|locus:2184362 [details] [associations]
symbol:BTR1L "AT5G04430" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008380 "RNA splicing" evidence=NAS] [GO:0003727
"single-stranded RNA binding" evidence=IPI] [GO:0046719 "regulation
of viral protein levels in host cell" evidence=IMP]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 EMBL:CP002688 GO:GO:0008380 GO:GO:0003727 KO:K14944
IPI:IPI00533577 RefSeq:NP_850764.1 UniGene:At.4918
ProteinModelPortal:F4JW99 SMR:F4JW99 PRIDE:F4JW99
EnsemblPlants:AT5G04430.2 GeneID:830322 KEGG:ath:AT5G04430
OMA:RNIMEIT PhylomeDB:F4JW99 GO:GO:0046719 Uniprot:F4JW99
Length = 334
Score = 97 (39.2 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 49/196 (25%), Positives = 88/196 (44%)
Query: 25 SKRR-NPGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRIS--- 80
+KR P D +E + T R+L + ++++ + I++S
Sbjct: 16 AKRSPEPHDSSEADS-AEKPTHIRFLVSNAAAGSVIGKGGSTITEFQAKSGARIQLSRNQ 74
Query: 81 ETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTL 140
E PG +RI+ I S + E V+ + L ++H + AED +E
Sbjct: 75 EFFPGTTDRIIMISGSIK---------EVVNGLELILDKLHSELHAEDG---NEVEPRRR 122
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I R++VP G +IGKGG I++ E++A I+I ++ LS D L+ ++G
Sbjct: 123 I--RLVVPNSSCGGIIGKGGATIKSFIEESKAGIKISPLDNT-FYGLS-DRLVTLSGTFE 178
Query: 201 VVRKALVQIASRLHEN 216
+A+ I ++L E+
Sbjct: 179 EQMRAIDLILAKLTED 194
Score = 65 (27.9 bits), Expect = 0.00023, Sum P(2) = 0.00023
Identities = 24/90 (26%), Positives = 40/90 (44%)
Query: 337 KTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDE 396
K + + T I V IG ++GRGG I E+ T A I+I ++ ++ +
Sbjct: 245 KYQNHKEEASTTVTIGVADEHIGLVLGRGGRNIMEITQMTGARIKI--SDRGDFMSGTTD 302
Query: 397 EMVQITGSLDVASSALSQVTLRLRANTFER 426
V ITG A + + ++ + T ER
Sbjct: 303 RKVSITGPQRAIQQAETMIKQKVDSAT-ER 331
>POMBASE|SPCC757.09c [details] [associations]
symbol:rnc1 "RNA-binding protein that suppresses
calcineurin deletion Rnc1" species:4896 "Schizosaccharomyces pombe"
[GO:0003729 "mRNA binding" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0005829 "cytosol" evidence=IDA]
[GO:0043409 "negative regulation of MAPK cascade" evidence=IGI]
[GO:0048255 "mRNA stabilization" evidence=IMP] InterPro:IPR004087
InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084 SMART:SM00322
PomBase:SPCC757.09c GO:GO:0005829 EMBL:CU329672
GenomeReviews:CU329672_GR GO:GO:0003729 GO:GO:0048255 GO:GO:0043409
HSSP:Q91WJ8 OrthoDB:EOG4Z65XM eggNOG:NOG315872 PIR:T41600
RefSeq:NP_587684.1 ProteinModelPortal:O74919 STRING:O74919
PRIDE:O74919 EnsemblFungi:SPCC757.09c.1 GeneID:2539434
KEGG:spo:SPCC757.09c HOGENOM:HOG000184255 OMA:NCESIAY
NextBio:20800596 Uniprot:O74919
Length = 398
Score = 98 (39.6 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 25/68 (36%), Positives = 37/68 (54%)
Query: 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGS 404
P +T I +P+ +GC+IGRGG+ ISE+R + + I I E + E M ITG+
Sbjct: 319 PKVTQNISIPADMVGCIIGRGGSKISEIRRTSGSKISI-AKEPHDETG---ERMFTITGT 374
Query: 405 LDVASSAL 412
+ AL
Sbjct: 375 HEENEKAL 382
Score = 66 (28.3 bits), Expect = 0.00024, Sum P(2) = 0.00024
Identities = 23/89 (25%), Positives = 43/89 (48%)
Query: 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
DD +T+R L+ + G +IGK G+ + +R+ T + + K +P D
Sbjct: 85 DDATYATQQLTLRALLSTREAGIIIGKAGKNVAELRSTTNVKAGVTKA--VPNV---HDR 139
Query: 192 LLQVAGE-PAVVR--KALVQIASRLHENP 217
+L ++G VVR + ++ I ++ NP
Sbjct: 140 VLTISGPLENVVRAYRFIIDIFAKNSTNP 168
>UNIPROTKB|F1LT74 [details] [associations]
symbol:F1LT74 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 IPI:IPI00568045
Ensembl:ENSRNOT00000050969 OMA:YNISMIA Uniprot:F1LT74
Length = 320
Score = 81 (33.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 25/73 (34%), Positives = 39/73 (53%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ IGC+IGR GA I+E+R + A I+ P D + V ITG AS
Sbjct: 249 LTLPNDLIGCIIGRQGAKINEIRQMSGAQIKTAN----PVEGSTDRQ-VTITGP--AASI 301
Query: 411 ALSQVTLRLRANT 423
+L+Q + R ++
Sbjct: 302 SLAQYLINARLSS 314
Score = 81 (33.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 47/153 (30%), Positives = 71/153 (46%)
Query: 72 ETKSNIRIS-ETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSL 130
E S IR S E+V E+ I + SEG N E P +A+F+ I+ D
Sbjct: 27 EVGSIIRKSRESVKKLQEKSARI-NISEG-NCPERIITLAGPT-NAIFKAFAMII--DKP 81
Query: 131 ADDEFGELTLITVRM-----LVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185
+D +T T +VPA Q G +IGKG I+ IR T AQ++ + LP
Sbjct: 82 EEDISSSMTNSTAASRPPVTVVPASQCGSLIGKG--TIKEIRESTGAQVQAAGNM-LPN- 137
Query: 186 ALSFDELLQVAGE-PAVVRKALVQIASRLHENP 217
S + + +AG P+++ + + QI + E P
Sbjct: 138 --STERAITIAGILPSII-ECVKQICVVMLETP 167
>MGI|MGI:1890357 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding
protein 1" species:10090 "Mus musculus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0003729
"mRNA binding" evidence=ISO] [GO:0003730 "mRNA 3'-UTR binding"
evidence=ISO] [GO:0005634 "nucleus" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006403 "RNA localization"
evidence=ISO] [GO:0006417 "regulation of translation" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=ISO] [GO:0010610
"regulation of mRNA stability involved in response to stress"
evidence=ISO] [GO:0017148 "negative regulation of translation"
evidence=ISO] [GO:0030425 "dendrite" evidence=ISO] [GO:0030529
"ribonucleoprotein complex" evidence=ISO] [GO:0045182 "translation
regulator activity" evidence=ISO] [GO:0048027 "mRNA 5'-UTR binding"
evidence=ISO] [GO:0070934 "CRD-mediated mRNA stabilization"
evidence=ISO] [GO:0070937 "CRD-mediated mRNA stability complex"
evidence=ISO] InterPro:IPR000504 InterPro:IPR004087
InterPro:IPR004088 InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076
PROSITE:PS50084 PROSITE:PS50102 SMART:SM00322 SMART:SM00360
EMBL:AF061569 MGI:MGI:1890357 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 GO:GO:0030425 Gene3D:3.30.70.330
GO:GO:0045182 GO:GO:0048027 GO:GO:0003730 EMBL:AL603682
GO:GO:0010494 GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1
HOVERGEN:HBG052725 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 OMA:EQETVHV
OrthoDB:EOG405S0T GO:GO:0010610 GO:GO:0006403 EMBL:AK044850
EMBL:AK013940 EMBL:AL606704 EMBL:BC051679 IPI:IPI00131056
RefSeq:NP_034081.1 UniGene:Mm.294769 UniGene:Mm.490105
ProteinModelPortal:O88477 SMR:O88477 DIP:DIP-48578N STRING:O88477
PhosphoSite:O88477 PaxDb:O88477 PRIDE:O88477
Ensembl:ENSMUST00000013559 GeneID:140486 KEGG:mmu:140486
UCSC:uc007lay.2 InParanoid:O88477 NextBio:369796 Bgee:O88477
Genevestigator:O88477 Uniprot:O88477
Length = 577
Score = 89 (36.4 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +R+LVP +G +IGK G I+NI +T+++I + + E+ A + ++ + V P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 201 VVRKALVQIASRLHE 215
A I +H+
Sbjct: 252 GCSSACKMILEIMHK 266
Score = 79 (32.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
+ T I VP++ G +IG+GG ++E+++ T A + ++ + P D+ +V+I G
Sbjct: 488 LETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPDE--NDQVIVKIIGHFY 544
Query: 407 VASSALSQV 415
+ A ++
Sbjct: 545 ASQMAQRKI 553
>RGD|708580 [details] [associations]
symbol:Igf2bp1 "insulin-like growth factor 2 mRNA binding protein
1" species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=ISS;IDA] [GO:0005634
"nucleus" evidence=IEA] [GO:0005886 "plasma membrane" evidence=IEA]
[GO:0006403 "RNA localization" evidence=IMP] [GO:0010494
"cytoplasmic stress granule" evidence=ISS] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=ISS]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0030027 "lamellipodium" evidence=IEA] [GO:0030425 "dendrite"
evidence=IDA] [GO:0030529 "ribonucleoprotein complex" evidence=ISS]
[GO:0043197 "dendritic spine" evidence=IEA] [GO:0045182
"translation regulator activity" evidence=IEA] [GO:0048027 "mRNA
5'-UTR binding" evidence=IEA] [GO:0070934 "CRD-mediated mRNA
stabilization" evidence=IEA] [GO:0070937 "CRD-mediated mRNA
stability complex" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 RGD:708580
GO:GO:0005886 GO:GO:0005634 GO:GO:0017148 GO:GO:0000166
GO:GO:0030425 Gene3D:3.30.70.330 GO:GO:0043197 GO:GO:0045182
GO:GO:0030027 GO:GO:0048027 GO:GO:0003730 GO:GO:0010494
GO:GO:0070937 GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725
CTD:10642 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OMA:EQETVHV OrthoDB:EOG405S0T GO:GO:0010610
GO:GO:0006403 EMBL:AF541940 IPI:IPI00192556 RefSeq:NP_783184.1
UniGene:Rn.77572 ProteinModelPortal:Q8CGX0 SMR:Q8CGX0 STRING:Q8CGX0
PhosphoSite:Q8CGX0 Ensembl:ENSRNOT00000008139 GeneID:303477
KEGG:rno:303477 UCSC:RGD:708580 InParanoid:Q8CGX0 NextBio:651402
ArrayExpress:Q8CGX0 Genevestigator:Q8CGX0 Uniprot:Q8CGX0
Length = 577
Score = 89 (36.4 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 22/75 (29%), Positives = 40/75 (53%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +R+LVP +G +IGK G I+NI +T+++I + + E+ A + ++ + V P
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN----AGAAEKAISVHSTPE 251
Query: 201 VVRKALVQIASRLHE 215
A I +H+
Sbjct: 252 GCSSACKMILEIMHK 266
Score = 79 (32.9 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 18/69 (26%), Positives = 38/69 (55%)
Query: 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLD 406
+ T I VP++ G +IG+GG ++E+++ T A + ++ + P D+ +V+I G
Sbjct: 488 LETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPDE--NDQVIVKIIGHFY 544
Query: 407 VASSALSQV 415
+ A ++
Sbjct: 545 ASQMAQRKI 553
>UNIPROTKB|F8VWX1 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 IPI:IPI01020747
ProteinModelPortal:F8VWX1 SMR:F8VWX1 Ensembl:ENST00000549571
ArrayExpress:F8VWX1 Bgee:F8VWX1 Uniprot:F8VWX1
Length = 173
Score = 81 (33.6 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
+++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 15 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 52
Score = 71 (30.1 bits), Expect = 0.00029, Sum P(2) = 0.00029
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 332 PRCSEKTERESGDPVITTR-----ILVPSAQIGCLIGRGGAIISEMRSATRASIRI 382
P T+ DP+ T+R I+VP++ G +IG+GGA + + + A +++
Sbjct: 115 PSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL 170
>TAIR|locus:2140513 [details] [associations]
symbol:AT4G10070 "AT4G10070" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=ISM] [GO:0008150 "biological_process" evidence=ND]
[GO:0000956 "nuclear-transcribed mRNA catabolic process"
evidence=RCA] [GO:0009688 "abscisic acid biosynthetic process"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:CP002687 GO:GO:0003723
UniGene:At.33655 IPI:IPI01020077 RefSeq:NP_192745.2
ProteinModelPortal:F4JLJ3 SMR:F4JLJ3 EnsemblPlants:AT4G10070.1
GeneID:826598 KEGG:ath:AT4G10070 OMA:PSTHAIG ArrayExpress:F4JLJ3
Uniprot:F4JLJ3
Length = 725
Score = 93 (37.8 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 32/144 (22%), Positives = 64/144 (44%)
Query: 73 TKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLAD 132
T ++ + GC E + + E + +D + V+ + + +
Sbjct: 112 TDDQVKPEDNQQGCIEDV----NGGEHQKVIDDDSKEVNDGSSQENGKEENKEVDGEKSQ 167
Query: 133 DEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHL-PLCALSFDE 191
E T R+ VP+ ++G +IGKGG+ I+ ++ + A+I+IL+D P AL
Sbjct: 168 KEVDGTQSTTRRIDVPSSKVGVLIGKGGETIRYLQFNSGAKIQILRDSEADPSSAL---R 224
Query: 192 LLQVAGEPAVVRKALVQIASRLHE 215
+++ G A + A I++ + E
Sbjct: 225 PVEIIGSVACIESAEKLISAVIAE 248
Score = 77 (32.2 bits), Expect = 0.00030, Sum P(2) = 0.00030
Identities = 24/71 (33%), Positives = 39/71 (54%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYED---EEMVQITGS--- 404
I VP+ ++G +IGRGG I M+ TR+ R + +P+ A D E V+I+G
Sbjct: 276 IKVPNDKVGLIIGRGGETIKNMQ--TRSGAR---TQLIPQHAEGDGLKERTVRISGDKMQ 330
Query: 405 LDVASSALSQV 415
+D+A+ + V
Sbjct: 331 IDIATDMIKDV 341
>ZFIN|ZDB-GENE-000308-1 [details] [associations]
symbol:igf2bp3 "insulin-like growth factor 2 mRNA
binding protein 3" species:7955 "Danio rerio" [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003730 "mRNA
3'-UTR binding" evidence=ISS] [GO:0006417 "regulation of
translation" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IEA] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 Pfam:PF13014 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 ZFIN:ZDB-GENE-000308-1
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003730 HSSP:Q9Y6M1 HOVERGEN:HBG052725
KO:K13197 eggNOG:NOG249985 GeneTree:ENSGT00530000063171
HOGENOM:HOG000000675 OrthoDB:EOG405S0T CTD:10643 OMA:EAQDTKF
EMBL:AF161270 EMBL:BC045873 IPI:IPI00497892 RefSeq:NP_571566.1
UniGene:Dr.8280 ProteinModelPortal:Q9PW80 SMR:Q9PW80 PRIDE:Q9PW80
Ensembl:ENSDART00000010140 GeneID:30967 KEGG:dre:30967
InParanoid:Q9PW80 NextBio:20807119 ArrayExpress:Q9PW80 Bgee:Q9PW80
Uniprot:Q9PW80
Length = 582
Score = 122 (48.0 bits), Expect = 0.00031, P = 0.00031
Identities = 95/448 (21%), Positives = 178/448 (39%)
Query: 17 SDAATNGGSKRRNPGDETEQRG--IGSE-----DTVYRYLCPLRXXXXXXXXXXXXXXQL 69
+DA GG + NP Q +G+ D R L P + +
Sbjct: 161 ADAPAVGGRRGFNPRGPPRQGSPSLGARPKLQSDVPLRLLVPTQFVGAIIGKEGATIRNI 220
Query: 70 RSETKSNIRISETV-PGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAED 128
+T S I I G E+ +T++S+ EG + S ++ + I+ ++
Sbjct: 221 TKQTHSKIDIHRKENAGAAEKPITVHSTPEGCS---------SACRNIM-----EIMQKE 266
Query: 129 SLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRI--LKD------E 180
++ D + E I +++L + +G +IGK G+ ++ I +T +I I L+D E
Sbjct: 267 AI-DTKITEE--IPLKILAHNNFVGRLIGKEGRNLKKIEQDTDTKITISPLQDLTLYNPE 323
Query: 181 H-------LPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXXXXXXXNIYQ 233
L CA + +E+++ E A + + S L +
Sbjct: 324 RTITVKGTLDACAKAEEEIMKKVRESYENDVAAMHLQSNLIPGLNLNALGLFPGAASGGI 383
Query: 234 SSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGA 293
S V +S P G+ Y + + + ++ L PA + +GA
Sbjct: 384 SPSV-VSGPPPGAQAGYQSFGAQMESE--TVHLFIPALAVGAIIGKQGQHIKQLSRFAGA 440
Query: 294 SIKV-DSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPV-ITTRI 351
SIK+ + G + ++ IS P A R+ + E+ + V + I
Sbjct: 441 SIKIAPADGIDAKQRMVIISGP-----PEAQFKAQGRIFGKLKEENFFGPKEEVKLEAHI 495
Query: 352 LVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSL---DVA 408
VPS G +IG+GG ++E+++ T A + ++ + P D+ +V+ITG +A
Sbjct: 496 KVPSFAAGRVIGKGGKTVNELQNLTSAEV-VVPRDQTPDE--NDQVVVKITGHFYASQLA 552
Query: 409 SSALSQVTLRLRANTFEREGALAAHPPV 436
+ ++ ++R ++ AA PPV
Sbjct: 553 QRKIQEIISQVRRQ--QQPKPSAAGPPV 578
>UNIPROTKB|Q5RB68 [details] [associations]
symbol:IGF2BP2 "Insulin-like growth factor 2 mRNA-binding
protein 2" species:9601 "Pongo abelii" [GO:0003730 "mRNA 3'-UTR
binding" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0005737 "cytoplasm" evidence=ISS] [GO:0005856 "cytoskeleton"
evidence=ISS] [GO:0048027 "mRNA 5'-UTR binding" evidence=ISS]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
PROSITE:PS50102 SMART:SM00322 SMART:SM00360 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0048027 GO:GO:0003730 HOVERGEN:HBG052725 CTD:10644
GO:GO:0044430 EMBL:CR858786 RefSeq:NP_001125573.1 UniGene:Pab.13543
ProteinModelPortal:Q5RB68 SMR:Q5RB68 PRIDE:Q5RB68 GeneID:100172487
KEGG:pon:100172487 InParanoid:Q5RB68 Uniprot:Q5RB68
Length = 556
Score = 109 (43.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 65/281 (23%), Positives = 117/281 (41%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPA 200
I +++L +G +IGK G+ ++ I ET +I I + L + + + + V G
Sbjct: 275 IPLKILAHNGLVGRLIGKEGRNLKKIEHETGTKITISSLQDLSI--YNPERTITVKGTVE 332
Query: 201 VVRKALVQIASRLHENPXXXXXXXXXXXXNIYQSSGVYLSAPLVGSYGNYSARRDEASAR 260
A ++I +L E N + SG + S +G + +
Sbjct: 333 ACASAEIEIMKKLRE-----AFENDMLAVNTH--SGYFSSLYPHHQFGPFPHHHSYPE-Q 384
Query: 261 EFSLRLVCPAXXXXXXXXXXXXXXXXXRQESGASIKVDSSGAEGDDCIIFISTKEFFEDP 320
E + L P + +GASIK+ + AEG D +S +
Sbjct: 385 EI-VNLFIPTQAVGAIIGKKGAHIKQLARFAGASIKI--APAEGPD----VSERMVIITG 437
Query: 321 SPTITAALRLQPRCSEKTERESG-DPV----ITTRILVPSAQIGCLIGRGGAIISEMRSA 375
P A + Q R K + E+ +P + I VPS+ G +IG+GG ++E+++
Sbjct: 438 PPE--AQFKAQGRIFGKLKEENFFNPKEEVKLEAHIRVPSSTAGRVIGKGGKTVNELQNL 495
Query: 376 TRASIRILTNENVPKVAYEDEEM-VQITGSLDVASSALSQV 415
T A + I+ + P E+EE+ V+I G + +A ++
Sbjct: 496 TSAEV-IVPRDQTPD---ENEEVIVRIIGHFFASQTAQRKI 532
Score = 87 (35.7 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 27/86 (31%), Positives = 43/86 (50%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ +P+ +G +IG+ GA I ++ ASI+I E P V+ E MV ITG +
Sbjct: 389 LFIPTQAVGAIIGKKGAHIKQLARFAGASIKIAPAEG-PDVS---ERMVIITGPPEAQFK 444
Query: 411 ALSQVTLRLRANTF---EREGALAAH 433
A ++ +L+ F + E L AH
Sbjct: 445 AQGRIFGKLKEENFFNPKEEVKLEAH 470
Score = 80 (33.2 bits), Expect = 0.00035, Sum P(2) = 0.00035
Identities = 15/39 (38%), Positives = 27/39 (69%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
+R+LVP +G +IGK G I+NI +T++++ I + E+
Sbjct: 196 LRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKEN 234
Score = 55 (24.4 bits), Expect = 0.00051, Sum P(2) = 0.00051
Identities = 19/73 (26%), Positives = 31/73 (42%)
Query: 30 PGDETEQRGIGSEDTVYRYLCPLRXXXXXXXXXXXXXXQLRSETKSNIRISETV-PGCDE 88
PG ++ R I D R L P + + +T+S + I G E
Sbjct: 183 PGGTSQARQI---DFPLRILVPTQFVGAIIGKEGLTIKNITKQTQSRVDIHRKENSGAAE 239
Query: 89 RIVTIYSSSEGTN 101
+ VTI+++ EGT+
Sbjct: 240 KPVTIHATPEGTS 252
>GENEDB_PFALCIPARUM|PFF0250w [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:5833 "Plasmodium falciparum" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 103 (41.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 40/138 (28%), Positives = 68/138 (49%)
Query: 327 ALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNE 386
AL+L R E+ E+ +P+ R+LVP LIGR G+II + + + I++ N+
Sbjct: 445 ALKLIVRQMEEREKNINNPM---RMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNK 501
Query: 387 NVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHPPVLP-----YVP 441
E+E++V ITGS + + L+ V + + +E A+A V+P Y
Sbjct: 502 ES-----ENEKLVLITGSPE--AKILASVLVLQKLEEYENP-AIAREGLVIPLNEIYYNK 553
Query: 442 MSLDITDGSKYGNRDNQS 459
S + + +KY N +S
Sbjct: 554 NSNNNNNNNKYSNHMKKS 571
Score = 66 (28.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 145 MLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRK 204
+L+P IG VIGK G ++ I A I+ K+ + + +++L + G+ +K
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKKENKKK 122
Query: 205 AL 206
AL
Sbjct: 123 AL 124
>UNIPROTKB|C6KSP9 [details] [associations]
symbol:PFF0250w "RNA binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003723 "RNA binding"
evidence=ISS] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0003723 EMBL:AL844505
RefSeq:XP_966041.1 ProteinModelPortal:C6KSP9 PRIDE:C6KSP9
EnsemblProtists:PFF0250w:mRNA GeneID:3885713 KEGG:pfa:PFF0250w
EuPathDB:PlasmoDB:PF3D7_0605100 HOGENOM:HOG000281436
ProtClustDB:CLSZ2497375 Uniprot:C6KSP9
Length = 755
Score = 103 (41.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 40/138 (28%), Positives = 68/138 (49%)
Query: 327 ALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNE 386
AL+L R E+ E+ +P+ R+LVP LIGR G+II + + + I++ N+
Sbjct: 445 ALKLIVRQMEEREKNINNPM---RMLVPGKAASFLIGRKGSIIKYITEQSGSQIQVAKNK 501
Query: 387 NVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFEREGALAAHPPVLP-----YVP 441
E+E++V ITGS + + L+ V + + +E A+A V+P Y
Sbjct: 502 ES-----ENEKLVLITGSPE--AKILASVLVLQKLEEYENP-AIAREGLVIPLNEIYYNK 553
Query: 442 MSLDITDGSKYGNRDNQS 459
S + + +KY N +S
Sbjct: 554 NSNNNNNNNKYSNHMKKS 571
Score = 66 (28.3 bits), Expect = 0.00036, Sum P(2) = 0.00036
Identities = 18/62 (29%), Positives = 32/62 (51%)
Query: 145 MLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRK 204
+L+P IG VIGK G ++ I A I+ K+ + + +++L + G+ +K
Sbjct: 63 LLLPNRAIGYVIGKSGNNVREIEKACGAVIKCQKEFDVSVYPPPSEKILTIFGKKENKKK 122
Query: 205 AL 206
AL
Sbjct: 123 AL 124
>UNIPROTKB|C9J5V4 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00946082 ProteinModelPortal:C9J5V4 SMR:C9J5V4 STRING:C9J5V4
Ensembl:ENST00000497653 HOGENOM:HOG000213901 ArrayExpress:C9J5V4
Bgee:C9J5V4 Uniprot:C9J5V4
Length = 107
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
>UNIPROTKB|C9JSA6 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945164 ProteinModelPortal:C9JSA6 SMR:C9JSA6 STRING:C9JSA6
Ensembl:ENST00000489595 ArrayExpress:C9JSA6 Bgee:C9JSA6
Uniprot:C9JSA6
Length = 92
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
>UNIPROTKB|C9JTY5 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HOGENOM:HOG000182823
HGNC:HGNC:8652 IPI:IPI00978070 ProteinModelPortal:C9JTY5 SMR:C9JTY5
STRING:C9JTY5 Ensembl:ENST00000466412 ArrayExpress:C9JTY5
Bgee:C9JTY5 Uniprot:C9JTY5
Length = 124
Score = 97 (39.2 bits), Expect = 0.00037, P = 0.00037
Identities = 26/85 (30%), Positives = 48/85 (56%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHEN 216
+ + G A V A+ IA +L E+
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDED 86
>SGD|S000000128 [details] [associations]
symbol:HEK2 "RNA binding protein involved in asymmetric
localization of ASH1 mRNA" species:4932 "Saccharomyces cerevisiae"
[GO:0008298 "intracellular mRNA localization" evidence=IMP;IPI]
[GO:0016568 "chromatin modification" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA;IDA] [GO:0007004 "telomere maintenance via
telomerase" evidence=IMP;IPI] [GO:0003729 "mRNA binding"
evidence=IDA] [GO:0000784 "nuclear chromosome, telomeric region"
evidence=IDA] [GO:0000781 "chromosome, telomeric region"
evidence=IEA] [GO:0000932 "cytoplasmic mRNA processing body"
evidence=IEA;IDA] [GO:0005634 "nucleus" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0048255
"mRNA stabilization" evidence=IGI;IMP] [GO:0005694 "chromosome"
evidence=IEA] [GO:0006417 "regulation of translation" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 Pfam:PF13014
PROSITE:PS50084 SMART:SM00322 SGD:S000000128 GO:GO:0006417
GO:GO:0003729 GO:GO:0016568 EMBL:BK006936 GO:GO:0048255 EMBL:X77291
GO:GO:0000932 GO:GO:0008298 GO:GO:0051028 GO:GO:0000784
GO:GO:0007004 EMBL:Z35793 EMBL:AY692814 PIR:S45766
RefSeq:NP_009521.1 ProteinModelPortal:P38199 SMR:P38199
DIP:DIP-3934N IntAct:P38199 MINT:MINT-506819 STRING:P38199
PaxDb:P38199 PeptideAtlas:P38199 EnsemblFungi:YBL032W GeneID:852248
KEGG:sce:YBL032W CYGD:YBL032w eggNOG:NOG294694 OMA:NSHISSI
OrthoDB:EOG4Z65XM NextBio:970814 Genevestigator:P38199
GermOnline:YBL032W Uniprot:P38199
Length = 381
Score = 106 (42.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 55/239 (23%), Positives = 98/239 (41%)
Query: 21 TNGGSKRRNPGDETEQRGIGS--EDTV-YRYLCPLRXXXXXXXXXXXXXXQLRSETKSNI 77
TNGGS +G+ + T+ +R L L+ ++R+ I
Sbjct: 18 TNGGSSDAGSAATGGAPVVGTTAQPTINHRLLLSLKEAAKIIGTKGSTISRIRAANAVKI 77
Query: 78 RISETVPGCDERIVTIYSSSEGTNLFEDSGEFV------SPA-QDAL---------FRVH 121
ISE VPGC +RI++ + N+ G+ V +P +DA F
Sbjct: 78 GISEKVPGCSDRILSC--AGNVINVANAIGDIVDVLNKRNPENEDAAEGEAEEHYYFHFL 135
Query: 122 DRIVAEDSLADDEFGELTLIT----VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRIL 177
+ I+ S DE +L + VR++V I +IGK G I+++ + +I
Sbjct: 136 NHILPAPS--KDEIRDLQQLEDIGYVRLIVANSHISSIIGKAGATIKSLINKHGVKIVAS 193
Query: 178 KDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPXXXXXXXXXXXXNIYQSSG 236
KD LP S + ++++ G P + L++I+ + + ++ +SSG
Sbjct: 194 KD-FLPA---SDERIIEIQGFPGSITNVLIEISEIILSDVDVRFSTERSYFPHLKKSSG 248
Score = 55 (24.4 bits), Expect = 0.00037, Sum P(2) = 0.00037
Identities = 15/49 (30%), Positives = 26/49 (53%)
Query: 339 ERESGDPVI-----TTRI--LVPSAQIGCLIGRGGAIISEMRSATRASI 380
++ SG+P TRI +P +G +IGRG I +++ T+ +I
Sbjct: 244 KKSSGEPTSPSTSSNTRIELKIPELYVGAIIGRGMNRIKNLKTFTKTNI 292
>FB|FBgn0262735 [details] [associations]
symbol:Imp "IGF-II mRNA-binding protein" species:7227
"Drosophila melanogaster" [GO:0003729 "mRNA binding" evidence=ISS]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0007399 "nervous
system development" evidence=IMP] [GO:0051124 "synaptic growth at
neuromuscular junction" evidence=IMP] [GO:0071013 "catalytic step 2
spliceosome" evidence=IDA] [GO:0000398 "mRNA splicing, via
spliceosome" evidence=IC] [GO:0071011 "precatalytic spliceosome"
evidence=IDA] [GO:0007283 "spermatogenesis" evidence=IEP]
InterPro:IPR000504 InterPro:IPR004087 InterPro:IPR004088
InterPro:IPR012677 Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084
SMART:SM00322 GO:GO:0000166 EMBL:AE014298 Gene3D:3.30.70.330
GO:GO:0051124 GO:GO:0007283 GO:GO:0003723 GO:GO:0071011
GO:GO:0000398 GO:GO:0071013 CTD:32009 UniGene:Dm.3773 GeneID:32009
KEGG:dme:Dmel_CG1691 FlyBase:FBgn0262735 GenomeRNAi:32009
NextBio:776342 RefSeq:NP_001036268.2 ProteinModelPortal:Q0KHU2
SMR:Q0KHU2 STRING:Q0KHU2 PRIDE:Q0KHU2 UCSC:CG1691-RI
OrthoDB:EOG4RBP0X PhylomeDB:Q0KHU2 Bgee:Q0KHU2 Uniprot:Q0KHU2
Length = 588
Score = 90 (36.7 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 23/80 (28%), Positives = 41/80 (51%)
Query: 344 DPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG 403
D +T +LV S+Q+G +IG+GG + E++ T + I++ + P ++E V I G
Sbjct: 401 DVRLTVELLVASSQVGRIIGKGGQNVRELQRVTGSVIKLPEHALAPPSGGDEETPVHIIG 460
Query: 404 SLDVASSALSQV-TLRLRAN 422
SA ++ + L N
Sbjct: 461 LFYSVQSAQRRIRAMMLSTN 480
Score = 77 (32.2 bits), Expect = 0.00038, Sum P(2) = 0.00038
Identities = 15/57 (26%), Positives = 35/57 (61%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199
+R+LV ++ +G +IG+ G I+ I ++RA++ + + E++ S ++ + + G P
Sbjct: 95 LRILVQSEMVGAIIGRQGSTIRTITQQSRARVDVHRKENVG----SLEKSITIYGNP 147
>TAIR|locus:2043530 [details] [associations]
symbol:AT2G25970 "AT2G25970" species:3702 "Arabidopsis
thaliana" [GO:0003676 "nucleic acid binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=IEA] [GO:0005829 "cytosol"
evidence=IDA] [GO:0006606 "protein import into nucleus"
evidence=RCA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 GO:GO:0005829 EMBL:CP002685
GenomeReviews:CT485783_GR GO:GO:0003723 EMBL:AC004747 EMBL:AC005395
eggNOG:NOG300923 KO:K13210 HSSP:Q9UNW9 EMBL:AY078954 EMBL:AK226845
IPI:IPI00540360 PIR:T02627 RefSeq:NP_180167.1 UniGene:At.21555
ProteinModelPortal:O82762 SMR:O82762 STRING:O82762 PaxDb:O82762
PRIDE:O82762 ProMEX:O82762 EnsemblPlants:AT2G25970.1 GeneID:817137
KEGG:ath:AT2G25970 TAIR:At2g25970 HOGENOM:HOG000242545
InParanoid:O82762 OMA:AANSTQD PhylomeDB:O82762
ProtClustDB:CLSN2913011 ArrayExpress:O82762 Genevestigator:O82762
Uniprot:O82762
Length = 632
Score = 90 (36.7 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 23/82 (28%), Positives = 43/82 (52%)
Query: 135 FGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHL-PLCALSFDELL 193
+G T ++ +P ++G +IGKGG+ I+ ++ ++ A+I++ +D P CA +
Sbjct: 128 YGSFQGTTKKIDIPNMRVGVIIGKGGETIKYLQLQSGAKIQVTRDMDADPNCAT---RTV 184
Query: 194 QVAGEPAVVRKALVQIASRLHE 215
+ G P + KA I L E
Sbjct: 185 DLTGTPDQISKAEQLITDVLQE 206
Score = 77 (32.2 bits), Expect = 0.00045, Sum P(2) = 0.00045
Identities = 23/93 (24%), Positives = 48/93 (51%)
Query: 353 VPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG---SLDVAS 409
+P+ ++G +IG+GG I M++ T A I+++ ++P E +QI G ++ A
Sbjct: 236 IPNNKVGLIIGKGGETIKSMQAKTGARIQVIPL-HLPPGDPTPERTLQIDGITEQIEHAK 294
Query: 410 SALSQVTL---RLRANT----FEREGALAAHPP 435
++++ R+R + + ++G A PP
Sbjct: 295 QLVNEIISGENRMRNSAMGGGYPQQGGYQARPP 327
>UNIPROTKB|Q96I24 [details] [associations]
symbol:FUBP3 "Far upstream element-binding protein 3"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003677 "DNA binding" evidence=IEA] [GO:0045893 "positive
regulation of transcription, DNA-dependent" evidence=IDA]
[GO:0006351 "transcription, DNA-dependent" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA;NAS] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0010628 "positive regulation of gene expression"
evidence=IDA] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 EMBL:U69127 GO:GO:0005634
GO:GO:0005737 GO:GO:0045893 GO:GO:0003677 EMBL:CH471090
GO:GO:0006351 GO:GO:0003723 EMBL:AL359092 eggNOG:NOG300923
HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210 EMBL:AK295155
EMBL:AL353695 EMBL:BC001325 EMBL:BC007874 EMBL:BC137338
EMBL:BC137340 IPI:IPI00063245 IPI:IPI00377261 RefSeq:NP_003925.1
UniGene:Hs.673029 UniGene:Hs.98751 ProteinModelPortal:Q96I24
SMR:Q96I24 DIP:DIP-50124N IntAct:Q96I24 STRING:Q96I24
PhosphoSite:Q96I24 DMDM:37078499 REPRODUCTION-2DPAGE:IPI00377261
PaxDb:Q96I24 PRIDE:Q96I24 DNASU:8939 Ensembl:ENST00000319725
Ensembl:ENST00000372376 GeneID:8939 KEGG:hsa:8939 UCSC:uc004bzr.1
UCSC:uc010mzd.1 CTD:8939 GeneCards:GC09P133454 HGNC:HGNC:4005
HPA:HPA047658 MIM:603536 neXtProt:NX_Q96I24 PharmGKB:PA28421
InParanoid:Q96I24 OMA:AAPHQNT OrthoDB:EOG4X97H1 PhylomeDB:Q96I24
GenomeRNAi:8939 NextBio:33614 ArrayExpress:Q96I24 Bgee:Q96I24
CleanEx:HS_FUBP3 Genevestigator:Q96I24 GermOnline:ENSG00000107164
Uniprot:Q96I24
Length = 572
Score = 103 (41.3 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 33/132 (25%), Positives = 65/132 (49%)
Query: 85 GCDERIVTIYSS-SEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITV 143
GC +I + S E + + E + A+ L ++ DR +D T+ +
Sbjct: 108 GCKIQIASESSGIPERPCVLTGTPESIEQAKRLLGQIVDRCRNGPGFHNDIDSNSTIQEI 167
Query: 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVR 203
L+PA ++G VIG+GG+ I+ ++ T ++ +++D LP A D+ L++ G+ V+
Sbjct: 168 --LIPASKVGLVIGRGGETIKQLQERTGVKMVMIQDGPLPTGA---DKPLRITGDAFKVQ 222
Query: 204 KALVQIASRLHE 215
+A + + E
Sbjct: 223 QAREMVLEIIRE 234
Score = 62 (26.9 bits), Expect = 0.00047, Sum P(2) = 0.00047
Identities = 24/83 (28%), Positives = 38/83 (45%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P E Q+ G D
Sbjct: 258 VSVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPERAAQVMGPPDRCQH 312
Query: 411 ALSQVT-LRLRANTFEREGALAA 432
A ++ L L A + G LAA
Sbjct: 313 AAHIISELILTAQERDGFGGLAA 335
>UNIPROTKB|C9J7A9 [details] [associations]
symbol:PCBP4 "Poly(rC)-binding protein 4" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 EMBL:AC115284 HGNC:HGNC:8652
IPI:IPI00945892 ProteinModelPortal:C9J7A9 SMR:C9J7A9 STRING:C9J7A9
Ensembl:ENST00000490063 ArrayExpress:C9J7A9 Bgee:C9J7A9
Uniprot:C9J7A9
Length = 86
Score = 96 (38.9 bits), Expect = 0.00047, P = 0.00047
Identities = 26/84 (30%), Positives = 47/84 (55%)
Query: 133 DEFGELTL-ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191
+E EL++ +T+RML+ ++G +IGK G+ ++ IR ++ A+I I + C +
Sbjct: 9 EEEPELSITLTLRMLMHGKEVGSIIGKKGETVKRIREQSSARITISEGS----CP---ER 61
Query: 192 LLQVAGEPAVVRKALVQIASRLHE 215
+ + G A V A+ IA +L E
Sbjct: 62 ITTITGSTAAVFHAVSMIAFKLDE 85
>ZFIN|ZDB-GENE-041121-12 [details] [associations]
symbol:zgc:101598 "zgc:101598" species:7955 "Danio
rerio" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013
PROSITE:PS50084 SMART:SM00322 ZFIN:ZDB-GENE-041121-12 GO:GO:0003723
eggNOG:NOG300923 HOGENOM:HOG000231552 HOVERGEN:HBG000625 KO:K13210
InterPro:IPR015096 Pfam:PF09005 OrthoDB:EOG4X97H1 EMBL:BC085379
IPI:IPI00487369 RefSeq:NP_001007777.1 UniGene:Dr.76973
ProteinModelPortal:Q5RKQ3 SMR:Q5RKQ3 STRING:Q5RKQ3 GeneID:493616
KEGG:dre:493616 InParanoid:Q5RKQ3 NextBio:20865427
ArrayExpress:Q5RKQ3 Uniprot:Q5RKQ3
Length = 572
Score = 106 (42.4 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 21/71 (29%), Positives = 45/71 (63%)
Query: 145 MLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRK 204
+L+PA ++G VIGKGG I+ ++ T ++ +++D+ +P + D+ L+++G+P V++
Sbjct: 173 ILIPASKVGLVIGKGGDTIKQLQERTGVKMIMIQDDPMPTGS---DKPLRISGDPYKVQQ 229
Query: 205 ALVQIASRLHE 215
A + + E
Sbjct: 230 ARELVVEIIRE 240
Score = 57 (25.1 bits), Expect = 0.00072, Sum P(2) = 0.00072
Identities = 19/78 (24%), Positives = 36/78 (46%)
Query: 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASS 410
+ VP +G +IGR G +I ++++ A +RI + P + + Q+ G +
Sbjct: 263 VAVPRFAVGIVIGRNGEMIKKIQND--AGVRI---QFKPDDGISPDRVAQVMGQPERCQH 317
Query: 411 ALSQVTLRLRANTFEREG 428
A+ + L ER+G
Sbjct: 318 AVHLIN-ELVQTAQERDG 334
>UNIPROTKB|O42254 [details] [associations]
symbol:IGF2BP1 "Insulin-like growth factor 2 mRNA-binding
protein 1" species:9031 "Gallus gallus" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0005886 "plasma membrane" evidence=IEA] [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0010610 "regulation
of mRNA stability involved in response to stress" evidence=IEA]
[GO:0017148 "negative regulation of translation" evidence=IEA]
[GO:0045182 "translation regulator activity" evidence=IEA]
[GO:0048027 "mRNA 5'-UTR binding" evidence=IEA] [GO:0070934
"CRD-mediated mRNA stabilization" evidence=IEA] [GO:0070937
"CRD-mediated mRNA stability complex" evidence=ISS] [GO:0003730
"mRNA 3'-UTR binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR004087 InterPro:IPR004088 InterPro:IPR012677
Pfam:PF00013 Pfam:PF00076 PROSITE:PS50084 PROSITE:PS50102
SMART:SM00322 SMART:SM00360 GO:GO:0005886 GO:GO:0005634
GO:GO:0017148 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0045182
GO:GO:0048027 GO:GO:0003730 GO:GO:0010494 GO:GO:0070937
GO:GO:0070934 HSSP:Q9Y6M1 HOVERGEN:HBG052725 EMBL:AF026527
IPI:IPI00576155 RefSeq:NP_990402.1 UniGene:Gga.567
ProteinModelPortal:O42254 SMR:O42254 Ensembl:ENSGALT00000001975
GeneID:395953 KEGG:gga:395953 CTD:10642 eggNOG:NOG249985
GeneTree:ENSGT00530000063171 HOGENOM:HOG000000675 InParanoid:O42254
OMA:EQETVHV OrthoDB:EOG405S0T NextBio:20816018 GO:GO:0010610
Uniprot:O42254
Length = 576
Score = 87 (35.7 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 16/41 (39%), Positives = 28/41 (68%)
Query: 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH 181
I +R+LVP +G +IGK G I+NI +T+++I + + E+
Sbjct: 196 IPLRLLVPTQYVGAIIGKEGATIRNITKQTQSKIDVHRKEN 236
Score = 77 (32.2 bits), Expect = 0.00076, Sum P(2) = 0.00076
Identities = 19/70 (27%), Positives = 40/70 (57%)
Query: 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEM-VQITGSL 405
+ T I VP++ G +IG+GG ++E+++ T A + ++ + P E+E++ V+I G
Sbjct: 487 LETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV-VVPRDQTPD---ENEQVIVKIIGHF 542
Query: 406 DVASSALSQV 415
+ A ++
Sbjct: 543 YASQMAQRKI 552
>UNIPROTKB|J3KQU3 [details] [associations]
symbol:NOVA1 "RNA-binding protein Nova-1" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR004087 InterPro:IPR004088 Pfam:PF00013 PROSITE:PS50084
SMART:SM00322 GO:GO:0003723 HGNC:HGNC:7886 ChiTaRS:NOVA1
EMBL:AL079343 EMBL:AL132716 Ensembl:ENST00000449198 Uniprot:J3KQU3
Length = 277
Score = 81 (33.6 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 15/38 (39%), Positives = 26/38 (68%)
Query: 143 VRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180
+++L+P+ G +IGKGGQ I ++ ET A I++ K +
Sbjct: 11 LKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSK 48
Score = 74 (31.1 bits), Expect = 0.00094, Sum P(2) = 0.00094
Identities = 21/94 (22%), Positives = 44/94 (46%)
Query: 332 PRCSEKTERESGDPVITTR-----ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNE 386
P T+ DP+ T+R I+VP++ G +IG+GGA + + + A +++
Sbjct: 111 PSSPTTTKSSPSDPMTTSRANQVKIIVPNSTAGLIIGKGGATVKAVMEQSGAWVQL---S 167
Query: 387 NVPKVAYEDEEMVQITGSLDVASSALSQVTLRLR 420
P E +V ++G + A+ + +++
Sbjct: 168 QKPDGINLQERVVTVSGEPEQNRKAVELIIQKIQ 201
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.133 0.376 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 512 449 0.00092 118 3 11 23 0.44 34
35 0.45 37
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 161
No. of states in DFA: 588 (63 KB)
Total size of DFA: 227 KB (2124 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 33.86u 0.16s 34.02t Elapsed: 00:00:02
Total cpu time: 33.89u 0.16s 34.05t Elapsed: 00:00:02
Start: Mon May 20 15:22:20 2013 End: Mon May 20 15:22:22 2013
WARNINGS ISSUED: 1