Query 010373
Match_columns 512
No_of_seqs 333 out of 2043
Neff 8.3
Searched_HMMs 29240
Date Mon Mar 25 05:24:35 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010373.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010373hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2anr_A Neuro-oncological ventr 99.9 1.2E-26 4.1E-31 214.1 11.0 161 41-217 3-177 (178)
2 3krm_A Insulin-like growth fac 99.9 3E-26 1E-30 208.4 13.0 155 43-216 2-157 (163)
3 2jzx_A Poly(RC)-binding protei 99.9 5.6E-26 1.9E-30 205.9 9.7 155 42-215 3-159 (160)
4 2anr_A Neuro-oncological ventr 99.9 3.9E-25 1.3E-29 203.9 11.7 174 138-423 3-177 (178)
5 1j4w_A FUSE binding protein; s 99.9 4E-25 1.4E-29 203.1 11.3 156 43-213 2-174 (174)
6 3krm_A Insulin-like growth fac 99.9 1.7E-24 5.7E-29 196.9 15.0 155 141-422 3-157 (163)
7 2jvz_A KH type-splicing, FAR u 99.9 6.3E-25 2.2E-29 199.8 11.7 154 44-215 2-160 (164)
8 2jvz_A KH type-splicing, FAR u 99.9 6.8E-24 2.3E-28 193.0 14.9 160 141-422 2-161 (164)
9 1j4w_A FUSE binding protein; s 99.9 9.2E-24 3.1E-28 194.0 12.4 173 140-419 2-174 (174)
10 2jzx_A Poly(RC)-binding protei 99.9 5.4E-24 1.9E-28 192.8 10.4 157 139-421 3-159 (160)
11 3n89_A Defective in GERM LINE 99.9 9.6E-23 3.3E-27 204.4 10.5 231 136-421 25-261 (376)
12 3n89_A Defective in GERM LINE 99.8 6.5E-21 2.2E-25 191.2 11.5 287 39-410 25-327 (376)
13 2qnd_A FMR1 protein; KH domain 99.7 3.3E-18 1.1E-22 151.2 9.4 139 261-421 3-142 (144)
14 2qnd_A FMR1 protein; KH domain 99.7 7.8E-18 2.7E-22 148.9 10.3 136 43-215 3-142 (144)
15 2e3u_A PH-DIM2P, hypothetical 99.7 1.5E-16 5.1E-21 149.5 8.5 150 43-217 33-193 (219)
16 2e3u_A PH-DIM2P, hypothetical 99.6 1.1E-15 3.9E-20 143.5 11.5 154 140-421 33-191 (219)
17 2hh2_A KH-type splicing regula 99.6 5.8E-15 2E-19 123.5 7.5 74 347-422 7-80 (107)
18 1dtj_A RNA-binding neurooncolo 99.5 1.4E-14 4.8E-19 113.7 7.6 73 347-421 3-75 (76)
19 2axy_A Poly(RC)-binding protei 99.5 9.3E-15 3.2E-19 113.5 6.5 70 345-421 3-72 (73)
20 1zzk_A Heterogeneous nuclear r 99.5 3.9E-14 1.3E-18 112.7 9.0 73 345-422 5-77 (82)
21 2axy_A Poly(RC)-binding protei 99.5 1.2E-14 4.2E-19 112.8 5.4 70 139-215 3-72 (73)
22 2p2r_A Poly(RC)-binding protei 99.5 2E-14 6.8E-19 112.7 6.4 73 345-422 3-75 (76)
23 1wvn_A Poly(RC)-binding protei 99.5 2.9E-14 9.8E-19 113.5 7.1 73 345-422 4-76 (82)
24 1tua_A Hypothetical protein AP 99.5 1.2E-13 4.1E-18 126.5 11.2 151 142-421 5-160 (191)
25 1ec6_A RNA-binding protein NOV 99.5 2.7E-14 9.4E-19 115.0 5.9 77 347-425 3-79 (87)
26 2hh3_A KH-type splicing regula 99.5 5.4E-14 1.9E-18 117.0 7.6 71 347-422 11-81 (106)
27 1tua_A Hypothetical protein AP 99.5 4.3E-14 1.5E-18 129.4 6.6 143 46-215 6-160 (191)
28 1j5k_A Heterogeneous nuclear r 99.5 6E-14 2E-18 113.4 6.4 75 343-422 10-84 (89)
29 2opv_A KHSRP protein; KH domai 99.5 2E-13 6.8E-18 109.4 8.9 74 345-421 12-85 (85)
30 1dtj_A RNA-binding neurooncolo 99.4 8.5E-14 2.9E-18 109.1 6.4 72 141-215 3-75 (76)
31 1wvn_A Poly(RC)-binding protei 99.4 7.2E-14 2.5E-18 111.2 5.9 74 138-216 3-76 (82)
32 1x4n_A FAR upstream element bi 99.4 1.2E-13 4E-18 112.4 7.2 73 345-422 13-85 (92)
33 2p2r_A Poly(RC)-binding protei 99.4 6.6E-14 2.3E-18 109.7 5.4 73 139-216 3-75 (76)
34 1zzk_A Heterogeneous nuclear r 99.4 2E-13 6.7E-18 108.6 7.6 73 40-125 3-75 (82)
35 2dgr_A Ring finger and KH doma 99.4 7.6E-14 2.6E-18 110.7 4.7 69 345-421 8-76 (83)
36 1x4m_A FAR upstream element bi 99.4 1.5E-13 5.1E-18 112.2 6.2 74 345-421 13-86 (94)
37 2opv_A KHSRP protein; KH domai 99.4 4E-13 1.4E-17 107.6 7.9 75 138-215 11-85 (85)
38 1we8_A Tudor and KH domain con 99.4 6.2E-13 2.1E-17 110.7 8.7 77 345-424 13-89 (104)
39 1j5k_A Heterogeneous nuclear r 99.4 2.1E-13 7.1E-18 110.2 5.1 74 137-215 10-83 (89)
40 1x4m_A FAR upstream element bi 99.4 2.5E-13 8.5E-18 110.9 5.2 77 137-216 11-87 (94)
41 2dgr_A Ring finger and KH doma 99.4 1.4E-13 4.7E-18 109.2 3.5 70 138-215 7-76 (83)
42 1ec6_A RNA-binding protein NOV 99.4 2.4E-13 8.2E-18 109.4 4.9 73 141-216 3-76 (87)
43 1we8_A Tudor and KH domain con 99.4 3.6E-13 1.2E-17 112.1 5.1 86 138-226 12-97 (104)
44 2hh2_A KH-type splicing regula 99.4 6.1E-13 2.1E-17 111.2 6.3 73 142-216 8-80 (107)
45 1x4n_A FAR upstream element bi 99.4 9.1E-13 3.1E-17 107.1 7.2 72 41-125 12-83 (92)
46 2hh3_A KH-type splicing regula 99.3 8.2E-13 2.8E-17 109.9 6.2 71 141-216 11-81 (106)
47 1vig_A Vigilin; RNA-binding pr 99.3 1.4E-12 4.8E-17 100.5 5.6 67 346-419 4-70 (71)
48 2ctm_A Vigilin; K homology typ 99.3 2.8E-12 9.4E-17 104.6 7.4 74 345-424 15-88 (95)
49 2cte_A Vigilin; K homology typ 99.3 2.3E-12 7.9E-17 105.1 6.4 71 345-422 15-85 (94)
50 2ctl_A Vigilin; K homology typ 99.3 6E-12 2E-16 103.1 7.9 72 346-421 16-87 (97)
51 2ctl_A Vigilin; K homology typ 99.3 2.6E-12 8.9E-17 105.2 5.8 74 138-215 14-87 (97)
52 2cte_A Vigilin; K homology typ 99.3 4.1E-12 1.4E-16 103.6 5.5 73 137-216 13-85 (94)
53 2ctm_A Vigilin; K homology typ 99.3 5.7E-12 2E-16 102.7 6.1 73 137-215 13-85 (95)
54 1vig_A Vigilin; RNA-binding pr 99.3 3.5E-12 1.2E-16 98.3 4.6 67 140-213 4-70 (71)
55 2ctk_A Vigilin; K homology typ 99.2 1.3E-11 4.3E-16 102.5 6.1 71 346-423 16-86 (104)
56 2ctk_A Vigilin; K homology typ 99.1 4.2E-11 1.5E-15 99.3 5.2 69 140-215 16-84 (104)
57 2ctj_A Vigilin; K homology typ 99.1 1E-10 3.5E-15 95.1 6.1 70 345-421 15-85 (95)
58 2ctf_A Vigilin; K homology typ 99.1 3.2E-10 1.1E-14 93.5 7.8 67 346-422 26-93 (102)
59 2ctj_A Vigilin; K homology typ 99.0 1.5E-10 5E-15 94.2 4.9 73 136-215 12-85 (95)
60 2ctf_A Vigilin; K homology typ 99.0 3.5E-10 1.2E-14 93.3 6.6 65 141-215 27-92 (102)
61 2cpq_A FragIle X mental retard 98.8 2.3E-09 7.8E-14 85.5 4.6 65 345-419 13-79 (91)
62 2cpq_A FragIle X mental retard 98.7 8.2E-09 2.8E-13 82.3 4.9 65 137-211 11-77 (91)
63 1k1g_A SF1-BO isoform; splicin 98.6 1.2E-07 4.1E-12 81.5 8.8 76 346-421 6-99 (131)
64 2yqr_A KIAA0907 protein; struc 98.6 1.8E-07 6.2E-12 78.8 9.3 76 346-421 11-99 (119)
65 1k1g_A SF1-BO isoform; splicin 98.5 2.6E-07 8.9E-12 79.4 8.1 77 139-215 5-99 (131)
66 2yqr_A KIAA0907 protein; struc 98.3 1.1E-06 3.7E-11 74.0 7.2 77 139-215 10-99 (119)
67 2bl5_A MGC83862 protein, quaki 98.1 1.7E-06 6E-11 74.6 4.8 76 141-216 2-102 (140)
68 2bl5_A MGC83862 protein, quaki 98.0 4.6E-06 1.6E-10 72.0 5.5 74 347-420 2-100 (140)
69 3u1k_A Polyribonucleotide nucl 98.0 4.4E-06 1.5E-10 90.0 5.1 95 108-213 534-629 (630)
70 3v69_A Protein filia; RNA-bind 97.8 6.2E-05 2.1E-09 63.5 7.4 69 348-422 57-125 (140)
71 3u1k_A Polyribonucleotide nucl 97.6 3.6E-05 1.2E-09 82.9 4.6 64 345-419 565-629 (630)
72 2cxc_A NUSA; transcription ter 97.6 8E-06 2.7E-10 71.0 -0.8 109 40-178 32-140 (144)
73 4aid_A Polyribonucleotide nucl 97.5 5E-05 1.7E-09 82.8 3.5 97 108-215 537-634 (726)
74 2cxc_A NUSA; transcription ter 97.3 5.3E-05 1.8E-09 65.8 1.7 104 262-383 36-139 (144)
75 3v69_A Protein filia; RNA-bind 97.2 0.00063 2.2E-08 57.4 6.1 68 142-215 57-124 (140)
76 4aid_A Polyribonucleotide nucl 96.7 0.0003 1E-08 76.7 0.8 66 346-422 569-635 (726)
77 2asb_A Transcription elongatio 95.8 0.0068 2.3E-07 57.1 4.6 97 53-180 126-223 (251)
78 1k0r_A NUSA; two component arr 95.7 0.0038 1.3E-07 62.2 2.5 97 53-180 249-346 (366)
79 2asb_A Transcription elongatio 95.7 0.0062 2.1E-07 57.4 3.7 97 271-387 126-224 (251)
80 1k0r_A NUSA; two component arr 95.4 0.0083 2.9E-07 59.8 3.5 96 271-386 249-346 (366)
81 3cdi_A Polynucleotide phosphor 95.2 0.0047 1.6E-07 67.6 1.4 96 108-214 527-623 (723)
82 1hh2_P NUSA, N utilization sub 94.0 0.052 1.8E-06 53.8 5.4 95 272-385 246-341 (344)
83 1hh2_P NUSA, N utilization sub 94.0 0.047 1.6E-06 54.2 4.9 96 53-179 245-341 (344)
84 1e3p_A Guanosine pentaphosphat 93.9 0.0051 1.8E-07 67.6 -2.4 94 108-213 566-660 (757)
85 3cdi_A Polynucleotide phosphor 92.9 0.018 6.3E-07 62.9 0.0 64 346-420 559-623 (723)
86 1e3p_A Guanosine pentaphosphat 90.2 0.016 5.4E-07 63.7 -4.3 63 346-419 597-660 (757)
87 2pt7_G HP1451, hypothetical pr 69.6 1.8 6.1E-05 37.6 1.7 30 45-74 34-63 (152)
88 1wh9_A 40S ribosomal protein S 63.4 2.4 8.3E-05 33.4 1.2 29 45-73 36-64 (92)
89 2pt7_G HP1451, hypothetical pr 61.8 2.3 8E-05 36.8 1.0 66 142-216 34-99 (152)
90 2kl8_A OR15; structural genomi 56.7 24 0.00082 25.3 5.3 29 394-422 39-67 (85)
91 1wh9_A 40S ribosomal protein S 54.1 3.9 0.00013 32.2 0.9 28 348-375 36-63 (92)
92 4hhu_A OR280; engineered prote 48.2 39 0.0013 27.4 6.0 47 368-423 104-150 (170)
93 4hhu_A OR280; engineered prote 43.2 1.3E+02 0.0045 24.3 10.8 28 189-216 122-149 (170)
94 3ul0_C Nuclear CAP-binding pro 37.0 38 0.0013 19.0 2.9 23 8-32 2-24 (26)
95 3gku_A Probable RNA-binding pr 36.2 3.9 0.00013 37.8 -1.9 70 348-424 93-162 (225)
96 3gku_A Probable RNA-binding pr 33.2 13 0.00044 34.3 1.0 34 45-78 93-126 (225)
97 3dhx_A Methionine import ATP-b 30.2 75 0.0026 25.2 5.1 51 160-211 35-87 (106)
98 2kl8_A OR15; structural genomi 29.7 89 0.003 22.3 4.7 29 188-216 39-67 (85)
99 3j20_C 30S ribosomal protein S 29.4 16 0.00054 33.3 0.9 28 46-73 42-69 (210)
100 3u5c_D RP13, YS3, 40S ribosoma 28.8 16 0.00054 33.9 0.9 28 46-73 46-73 (240)
101 2ba0_A Archeal exosome RNA bin 28.7 79 0.0027 29.0 5.7 48 349-407 138-185 (229)
102 2xzm_C KH domain containing pr 28.3 20 0.0007 33.3 1.5 30 44-73 47-76 (243)
103 3iz6_B 40S ribosomal protein S 26.5 16 0.00055 33.6 0.5 29 45-73 45-73 (227)
104 3u5c_D RP13, YS3, 40S ribosoma 25.8 23 0.00078 32.9 1.3 28 348-375 45-72 (240)
105 3iev_A GTP-binding protein ERA 25.6 19 0.00066 34.6 0.9 31 139-169 238-269 (308)
106 3j20_C 30S ribosomal protein S 24.1 22 0.00076 32.3 0.9 35 349-383 42-83 (210)
107 3dhx_A Methionine import ATP-b 23.5 1E+02 0.0035 24.3 4.8 54 365-418 34-88 (106)
108 2xzm_C KH domain containing pr 23.5 28 0.00096 32.4 1.5 28 348-375 48-75 (243)
109 3r8n_C 30S ribosomal protein S 23.4 16 0.00056 33.1 -0.1 28 46-73 63-90 (206)
110 3iev_A GTP-binding protein ERA 22.5 33 0.0011 32.9 1.9 39 344-382 237-284 (308)
111 2zkq_c 40S ribosomal protein S 22.5 19 0.00064 33.5 0.1 30 44-73 44-73 (243)
112 3iz6_B 40S ribosomal protein S 22.4 23 0.00079 32.6 0.7 28 348-375 45-72 (227)
113 2z0s_A Probable exosome comple 22.1 1.3E+02 0.0045 27.5 5.9 50 349-409 150-200 (235)
114 3i1m_C 30S ribosomal protein S 21.5 19 0.00064 33.4 -0.2 27 46-72 64-90 (233)
115 2ba0_A Archeal exosome RNA bin 21.4 1.2E+02 0.004 27.8 5.3 56 144-210 139-194 (229)
No 1
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.93 E-value=1.2e-26 Score=214.07 Aligned_cols=161 Identities=27% Similarity=0.438 Sum_probs=130.4
Q ss_pred CCCeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCC---CCCCCccEEEEEcCCCCcccccCCcccCcHHHHHH
Q 010373 41 SEDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISET---VPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDAL 117 (512)
Q Consensus 41 ~~~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~---~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~ 117 (512)
+..++++|+||.+++|.||||+|++|++|+++|+|+|+|++. .+++.+|+|+|+|+.++ +.+|.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~~~er~v~I~G~~~~-------------v~~A~ 69 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPGTTERVCLIQGTIEA-------------LNAVH 69 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTTSSEEEEEEEECHHH-------------HHHHH
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCCCCCceEEEEeCHHH-------------HHHHH
Confidence 467999999999999999999999999999999999999864 46889999999998766 45666
Q ss_pred HHHHHHHhhhcccCC-----------cccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCccc
Q 010373 118 FRVHDRIVAEDSLAD-----------DEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCA 186 (512)
Q Consensus 118 ~~i~~~i~~~~~~~~-----------~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~ 186 (512)
.+|.+.+........ .........+++|+||.+++|+||||+|++|++|+++|||+|+|.++.. |.
T Consensus 70 ~~I~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~tga~I~i~~~~~---~~ 146 (178)
T 2anr_A 70 GFIAEKIREMPQNVAKTEPVSILQPQTTVNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQSGAWVQLSQKPD---GI 146 (178)
T ss_dssp HHHHHHHTCCCCC-----------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHSSCEEEECCCC------
T ss_pred HHHHHHHhccCCccccCCcccccCCccCCCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEeCCCC---CC
Confidence 666665543211000 0001223578999999999999999999999999999999999987633 33
Q ss_pred CCCCceEEEecCHHHHHHHHHHHHHHHhcCC
Q 010373 187 LSFDELLQVAGEPAVVRKALVQIASRLHENP 217 (512)
Q Consensus 187 ~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~ 217 (512)
.+.++.|+|+|++++|.+|+.+|.++|.++|
T Consensus 147 ~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 147 NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp -CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 4678999999999999999999999999875
No 2
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.93 E-value=3e-26 Score=208.39 Aligned_cols=155 Identities=25% Similarity=0.381 Sum_probs=131.2
Q ss_pred CeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCC-CCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHH
Q 010373 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISET-VPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVH 121 (512)
Q Consensus 43 ~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~-~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~ 121 (512)
+-+++|+||.+++|.||||+|++|++|+++|||+|+|++. .+++.+|+|+|+|++++ +.+|..+|+
T Consensus 2 ~~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~r~v~I~G~~e~-------------v~~A~~~I~ 68 (163)
T 3krm_A 2 QEMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPPETPDSKVRMVIITGPPEA-------------QFKAQGRIY 68 (163)
T ss_dssp CEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCCSSTTCSEEEEEEEECHHH-------------HHHHHHHHH
T ss_pred ceEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 4589999999999999999999999999999999999975 67899999999998766 677888888
Q ss_pred HHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHH
Q 010373 122 DRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAV 201 (512)
Q Consensus 122 ~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~ 201 (512)
+.+.+..... ......++++|+||.+++|+||||+|++|++|+++|||+|.|.++ ..|. ...++.|+|+|++++
T Consensus 69 ~~~~e~~~~~---~~~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I~i~~~-~~~~--~~~~~~v~I~G~~~~ 142 (163)
T 3krm_A 69 GKLKEENFFG---PKEEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEVVVPRD-QTPD--ENDQVIVKIIGHFYA 142 (163)
T ss_dssp HHHHHTTSSC---SSCCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEECCTT-CCCC--TTSEEEEEEEECHHH
T ss_pred HHHhcccccc---cccCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeEEECCC-CCCC--CCCceEEEEEeCHHH
Confidence 7776543221 123346788999999999999999999999999999999999765 4454 134458999999999
Q ss_pred HHHHHHHHHHHHhcC
Q 010373 202 VRKALVQIASRLHEN 216 (512)
Q Consensus 202 V~~A~~~I~~~l~~~ 216 (512)
|.+|+.+|.+++.+.
T Consensus 143 v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 143 SQMAQRKIRDILAQV 157 (163)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999999999874
No 3
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.93 E-value=5.6e-26 Score=205.94 Aligned_cols=155 Identities=35% Similarity=0.515 Sum_probs=130.0
Q ss_pred CCeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHH
Q 010373 42 EDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVH 121 (512)
Q Consensus 42 ~~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~ 121 (512)
..++++|+||.+++|.||||+|++|++|+++|||+|+|++. ++++|+|+|+|+.++ +.+|..+|.
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~--~~~~r~v~I~G~~~~-------------v~~A~~~I~ 67 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG--NCPERIITLAGPTNA-------------IFKAFAMII 67 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECC--TTTEEEEEEEEEHHH-------------HHHHHHHHH
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCC--CCCceEEEEEeCHHH-------------HHHHHHHHH
Confidence 56889999999999999999999999999999999999976 678999999998665 566777777
Q ss_pred HHHhhhcccCCc--ccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCH
Q 010373 122 DRIVAEDSLADD--EFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEP 199 (512)
Q Consensus 122 ~~i~~~~~~~~~--~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~ 199 (512)
+.+.+.....-. .......++++|+||.+++|+||||+|.+|++|+++|||+|+|.++ .+|. +.++.|+|+|++
T Consensus 68 ~~i~e~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga~I~i~~~-~~~~---~~~~~v~I~G~~ 143 (160)
T 2jzx_A 68 DKLEEDISSSMTNSTAASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGAQVQVAGD-MLPN---STERAITIAGIP 143 (160)
T ss_dssp HHHHHHHTSCCCSSSCCCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSSEECCCCC-CSTT---CCEEEEEEEECH
T ss_pred HHHHhhccccCCCCccCCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCCeEEECCC-CCCC---CCceEEEEEcCH
Confidence 666543221100 0112345899999999999999999999999999999999999765 4454 678999999999
Q ss_pred HHHHHHHHHHHHHHhc
Q 010373 200 AVVRKALVQIASRLHE 215 (512)
Q Consensus 200 ~~V~~A~~~I~~~l~~ 215 (512)
++|.+|+.+|.+++.+
T Consensus 144 ~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 144 QSIIECVKQICVVMLE 159 (160)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhc
Confidence 9999999999999876
No 4
>2anr_A Neuro-oncological ventral antigen 1; protein-RNA complex, KH domain, hairpin, RNA-binding protein complex; HET: 5BU; 1.94A {Homo sapiens} PDB: 2ann_A*
Probab=99.92 E-value=3.9e-25 Score=203.92 Aligned_cols=174 Identities=21% Similarity=0.384 Sum_probs=134.2
Q ss_pred CcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecC-CCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE-HLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 138 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~-~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
...++++|+||.+.+|.||||+|++|++|+++|||+|+|.++. ..|. +.+|+|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~~~~~~~i~vp~~~ig~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~---~~er~v~I~G~~~~v~~A~~~I~~~~~~~ 79 (178)
T 2anr_A 3 GSQYFLKVLIPSYAAGSIIGKGGQTIVQLQKETGATIKLSKSKDFYPG---TTERVCLIQGTIEALNAVHGFIAEKIREM 79 (178)
T ss_dssp CCCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBCTT---SSEEEEEEEECHHHHHHHHHHHHHHHTCC
T ss_pred CCCEEEEEEEChhHeeeeECCCcHHHHHHHHHhCCeEEEecCCCCCCC---CCCceEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3568999999999999999999999999999999999998753 2343 67899999999999999999999999874
Q ss_pred CCccccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCCeEE
Q 010373 217 PSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIK 296 (512)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~ 296 (512)
+.... ... . +.
T Consensus 80 ~~~~~------------------------------------~~~--~-------------------------------~~ 90 (178)
T 2anr_A 80 PQNVA------------------------------------KTE--P-------------------------------VS 90 (178)
T ss_dssp CCC-----------------------------------------------------------------------------
T ss_pred CCccc------------------------------------cCC--c-------------------------------cc
Confidence 22100 000 0 00
Q ss_pred ecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCchhHHHHHHHh
Q 010373 297 VDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSAT 376 (512)
Q Consensus 297 v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~T 376 (512)
+..+. . . .......+.+|+||.+++|+||||+|++|++|+++|
T Consensus 91 ~~~~~-----------~---------~-----------------~~~~~~~~~~i~Vp~~~vg~iIGkgG~~Ik~i~~~t 133 (178)
T 2anr_A 91 ILQPQ-----------T---------T-----------------VNPDRANQVKIIVPNSTAGLIIGKGGATVKAIMEQS 133 (178)
T ss_dssp ----------------------------------------------CGGGGEEEEEEEHHHHHHHHCGGGHHHHHHHHHS
T ss_pred ccCCc-----------c---------C-----------------CCCCCceEEEEEEchhheeeeECCCcHHHHHHHHHH
Confidence 00000 0 0 001123678999999999999999999999999999
Q ss_pred CCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhch
Q 010373 377 RASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (512)
Q Consensus 377 Ga~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 423 (512)
||+|+|.+....| ..+++.|+|+|++++|+.|+.+|.++|++++
T Consensus 134 ga~I~i~~~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e~p 177 (178)
T 2anr_A 134 GAWVQLSQKPDGI---NLQNRVVTVSGEPEQNRKAVELIIQKIQEDP 177 (178)
T ss_dssp SCEEEECCCC-------CCEEEEEEESSHHHHHHHHHHHHHHHHSCC
T ss_pred CCEEEEeCCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhCC
Confidence 9999997654333 4678999999999999999999999998753
No 5
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.92 E-value=4e-25 Score=203.09 Aligned_cols=156 Identities=23% Similarity=0.357 Sum_probs=124.5
Q ss_pred CeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHHH
Q 010373 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHD 122 (512)
Q Consensus 43 ~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~~ 122 (512)
..+++|+||.+++|.||||+|++|++|+++|+|+|+|.+..+++.+|+|+|+|++++ +.+|+.+|.+
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~~ 68 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDDGTTPERIAQITGPPDR-------------AQHAAEIITD 68 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCTTSCSEEEEEEEECHHH-------------HHHHHHHHHH
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCCCCCCccEEEEEeCHHH-------------HHHHHHHHHH
Confidence 467999999999999999999999999999999999987667888999999999766 4556656655
Q ss_pred HHhhhcccC-C-------------cc---cCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcc
Q 010373 123 RIVAEDSLA-D-------------DE---FGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLC 185 (512)
Q Consensus 123 ~i~~~~~~~-~-------------~~---~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~ 185 (512)
.+....... . .+ ......++++|+||.+++|+||||+|++|++|+++|||+|+|.++. +.|
T Consensus 69 ~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~I~i~~~~--~~~ 146 (174)
T 1j4w_A 69 LLRSVQAGNPGGPGPGGRGRGRGQGNWNMGPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGARIELQRNP--PPN 146 (174)
T ss_dssp HHHHHC-----------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEEEEECCC--TTT
T ss_pred HHHhcccCCCCCCCCCCCCCCCCCCccccCCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCEEEECCCC--CCC
Confidence 544321000 0 00 0012246889999999999999999999999999999999998752 345
Q ss_pred cCCCCceEEEecCHHHHHHHHHHHHHHH
Q 010373 186 ALSFDELLQVAGEPAVVRKALVQIASRL 213 (512)
Q Consensus 186 ~~~~dr~v~I~G~~~~V~~A~~~I~~~l 213 (512)
..+.++.|+|+|++++|.+|+.+|.++|
T Consensus 147 ~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 147 ADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp SCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred CCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 5577899999999999999999998764
No 6
>3krm_A Insulin-like growth factor 2 mRNA-binding protein 1; KH domain, cell projection, cytoplasm, nucleus, phosphoprotein, translation regulation; 2.75A {Homo sapiens}
Probab=99.92 E-value=1.7e-24 Score=196.85 Aligned_cols=155 Identities=27% Similarity=0.438 Sum_probs=129.8
Q ss_pred eEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCCcc
Q 010373 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPSRS 220 (512)
Q Consensus 141 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~~~~ 220 (512)
.+++|+||.+.+|.||||+|++|++|+++|||+|+|.++ ..| .+.+|+|+|+|+++++.+|+.+|.+++.+...
T Consensus 3 ~~~~~~ip~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~-~~~---~~~~r~v~I~G~~e~v~~A~~~I~~~~~e~~~-- 76 (163)
T 3krm_A 3 EMVQVFIPAQAVGAIIGKKGQHIKQLSRFASASIKIAPP-ETP---DSKVRMVIITGPPEAQFKAQGRIYGKLKEENF-- 76 (163)
T ss_dssp EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCEEEECCC-SST---TCSEEEEEEEECHHHHHHHHHHHHHHHHHTTS--
T ss_pred eEEEEEechhhcceeECCCcHHHHHHHHHHCCeEEEcCC-CCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcccc--
Confidence 488999999999999999999999999999999999875 233 37899999999999999999999999876210
Q ss_pred ccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCCeEEecCC
Q 010373 221 QHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSS 300 (512)
Q Consensus 221 ~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~ 300 (512)
+ -|.
T Consensus 77 -----------~-----------------------------------~~~------------------------------ 80 (163)
T 3krm_A 77 -----------F-----------------------------------GPK------------------------------ 80 (163)
T ss_dssp -----------S-----------------------------------CSS------------------------------
T ss_pred -----------c-----------------------------------ccc------------------------------
Confidence 0 000
Q ss_pred CCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeE
Q 010373 301 GAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASI 380 (512)
Q Consensus 301 ~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I 380 (512)
.....+.+|.||.+++|+||||+|++|++|++.|||+|
T Consensus 81 ------------------------------------------~~~~~~~~i~vp~~~~g~iIGkgG~~I~~i~~~tga~I 118 (163)
T 3krm_A 81 ------------------------------------------EEVKLETHIRVPASAAGRVIGKGGKTVNELQNLTAAEV 118 (163)
T ss_dssp ------------------------------------------CCCCEEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCEE
T ss_pred ------------------------------------------cCCceEEEEEcChhheeeEEcCCChHHHHHHHHhCCeE
Confidence 00135678999999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 381 RILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 381 ~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
+|++. ..|. ..+++.|+|+|++++|+.|+.+|.++|++.
T Consensus 119 ~i~~~-~~~~--~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 157 (163)
T 3krm_A 119 VVPRD-QTPD--ENDQVIVKIIGHFYASQMAQRKIRDILAQV 157 (163)
T ss_dssp ECCTT-CCCC--TTSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred EECCC-CCCC--CCCceEEEEEeCHHHHHHHHHHHHHHHHHH
Confidence 99653 3443 344568999999999999999999999874
No 7
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.92 E-value=6.3e-25 Score=199.84 Aligned_cols=154 Identities=25% Similarity=0.377 Sum_probs=125.1
Q ss_pred eEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCC--CCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHH
Q 010373 44 TVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISET--VPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVH 121 (512)
Q Consensus 44 ~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~--~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~ 121 (512)
++++|+||.+++|.||||+|++|++|+++|+|+|+|.+. .+++.+|+|+|+|++++ +..|+..|.
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~~~~~r~v~I~G~~~~-------------v~~A~~~I~ 68 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQNTNVDKPLRIIGDPYK-------------VQQACEMVM 68 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSSSSSCEEEEEEECHHH-------------HHHHHHHHH
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCCCCCceEEEEEcCHHH-------------HHHHHHHHH
Confidence 689999999999999999999999999999999999754 35678999999998766 566777777
Q ss_pred HHHhhhccc---CCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecC
Q 010373 122 DRIVAEDSL---ADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGE 198 (512)
Q Consensus 122 ~~i~~~~~~---~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~ 198 (512)
+.+.+.... ...+......++++|+||.+++|+||||+|.+|++|+++|||+|.|.+.+ + .+.++.|+|+|+
T Consensus 69 ~ii~e~~~~~~~~~~~~~~~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I~i~~~~--~---~~~~~~v~I~G~ 143 (164)
T 2jvz_A 69 DILRERDQGGFGDRNEYGSRIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGP 143 (164)
T ss_dssp HHTTCSSSCCCSSCSSCTTSCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEEEECCCC--T---TSSEEEEEEESC
T ss_pred HHHHhccCCCCCCccccCCCCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeEEEeCCC--C---CCCcEEEEEEcC
Confidence 665432210 00011111235688999999999999999999999999999999998753 2 256899999999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010373 199 PAVVRKALVQIASRLHE 215 (512)
Q Consensus 199 ~~~V~~A~~~I~~~l~~ 215 (512)
+++|.+|+.+|.+++.+
T Consensus 144 ~~~v~~A~~~I~~~i~~ 160 (164)
T 2jvz_A 144 PDRCEHAARIINDLLQS 160 (164)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhh
Confidence 99999999999998875
No 8
>2jvz_A KH type-splicing, FAR upstream element-binding protein 2; RNA binding protein, KH domain, KSRP, posttranscriptional regulation, mRNA decay; NMR {Homo sapiens}
Probab=99.91 E-value=6.8e-24 Score=193.01 Aligned_cols=160 Identities=23% Similarity=0.392 Sum_probs=128.4
Q ss_pred eEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCCcc
Q 010373 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPSRS 220 (512)
Q Consensus 141 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~~~~ 220 (512)
++.+|+||.+.+|.||||+|++|++|+++|||+|+|.++...+ ...+|.|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~Vp~~~~g~iIGk~G~~Ik~i~~~tg~~I~i~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~ii~e~~~~- 77 (164)
T 2jvz_A 2 TVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRERDQG- 77 (164)
T ss_dssp EEEEEEECTTCHHHHTCTTTHHHHHHHHTSCSEEEECCCTTSS---SSSCEEEEEEECHHHHHHHHHHHHHHTTCSSSC-
T ss_pred eEEEEEechhheeEEECCChHHHHHHHHHhCCeEEEecCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHHhccCC-
Confidence 5789999999999999999999999999999999998763222 367899999999999999999999988763110
Q ss_pred ccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCCeEEecCC
Q 010373 221 QHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSS 300 (512)
Q Consensus 221 ~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~ 300 (512)
.|. |.. .++.
T Consensus 78 ----------~~~-----------------------------------~~~------------------~~~~------- 87 (164)
T 2jvz_A 78 ----------GFG-----------------------------------DRN------------------EYGS------- 87 (164)
T ss_dssp ----------CCS-----------------------------------SCS------------------SCTT-------
T ss_pred ----------CCC-----------------------------------Ccc------------------ccCC-------
Confidence 000 000 0000
Q ss_pred CCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeE
Q 010373 301 GAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASI 380 (512)
Q Consensus 301 ~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I 380 (512)
....+.+|.||.+++|+||||+|++|++|+++|||+|
T Consensus 88 -------------------------------------------~~~~~~~i~vp~~~~g~iIGk~G~~I~~i~~~tg~~I 124 (164)
T 2jvz_A 88 -------------------------------------------RIGGGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRI 124 (164)
T ss_dssp -------------------------------------------SCSSSBCCEEETTTHHHHHCSSSHHHHHHHHHTCCEE
T ss_pred -------------------------------------------CCCceEEEEEChhhccccCCCCcHhHHHHHHHHCCeE
Confidence 0013457889999999999999999999999999999
Q ss_pred EEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 381 RILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 381 ~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
+|.+.+ + .+.++.|+|+|++++|+.|+.+|.++|++.
T Consensus 125 ~i~~~~--~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 161 (164)
T 2jvz_A 125 QFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 161 (164)
T ss_dssp EECCCC--T---TSSEEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred EEeCCC--C---CCCcEEEEEEcCHHHHHHHHHHHHHHHhhh
Confidence 997542 2 356799999999999999999999998763
No 9
>1j4w_A FUSE binding protein; single-stranded DNA binding protein; HET: DNA; NMR {Homo sapiens} SCOP: d.51.1.1 d.51.1.1
Probab=99.90 E-value=9.2e-24 Score=193.99 Aligned_cols=173 Identities=20% Similarity=0.333 Sum_probs=127.9
Q ss_pred ceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCCc
Q 010373 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPSR 219 (512)
Q Consensus 140 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~~~ 219 (512)
..+++|+||.+++|.||||+|++|++|+++|||+|+|.+.+ + ...+|+|+|+|++++|.+|+.+|.+++.+....
T Consensus 2 ~~~~~~~vp~~~vg~iIGkgG~~Ik~i~~~tg~~I~i~~~~--~---~~~~r~v~I~G~~~~v~~A~~~I~~~~~~~~~~ 76 (174)
T 1j4w_A 2 SHMIDVPIPRFAVGIVIGRNGEMIKKIQNDAGVRIQFKPDD--G---TTPERIAQITGPPDRAQHAAEIITDLLRSVQAG 76 (174)
T ss_dssp CEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEEECCT--T---SCSEEEEEEEECHHHHHHHHHHHHHHHHHHC--
T ss_pred CeEEEEEEChhheeeeecCCchHHHHHHHHhCCEEEEecCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhcccC
Confidence 35789999999999999999999999999999999998642 2 267899999999999999999999999873210
Q ss_pred cccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCCeEEecC
Q 010373 220 SQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDS 299 (512)
Q Consensus 220 ~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~ 299 (512)
.+.. + -|.. .-.++ ...
T Consensus 77 -----------~~~~------------------~--------------~p~~---~~~~~-------~~~---------- 93 (174)
T 1j4w_A 77 -----------NPGG------------------P--------------GPGG---RGRGR-------GQG---------- 93 (174)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred -----------CCCC------------------C--------------CCCC---CCCCC-------CCC----------
Confidence 0000 0 0000 00000 000
Q ss_pred CCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCchhHHHHHHHhCCe
Q 010373 300 SGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRAS 379 (512)
Q Consensus 300 ~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~ 379 (512)
.+.. .......+.+|.||.+++|+||||+|++|++|+++|||+
T Consensus 94 ----------------~~~~---------------------~~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~I~~~tga~ 136 (174)
T 1j4w_A 94 ----------------NWNM---------------------GPPGGLQEFNFIVPTGKTGLIIGKGGETIKSISQQSGAR 136 (174)
T ss_dssp -----------------------------------------------CEEEEEEETTTHHHHHCGGGHHHHHHHHHHCCE
T ss_pred ----------------cccc---------------------CCCCCcEEEEEEEChHHcCeeECCCchHHHHHHHHHCCE
Confidence 0000 000123678999999999999999999999999999999
Q ss_pred EEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 010373 380 IRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRL 419 (512)
Q Consensus 380 I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l 419 (512)
|+|.+. .+++.+++++.|+|+|++++|+.|+.+|.++|
T Consensus 137 I~i~~~--~~~~~~~~~~~v~I~G~~~~v~~A~~~I~~~i 174 (174)
T 1j4w_A 137 IELQRN--PPPNADPNMKLFTIRGTPQQIDYARQLIEEKI 174 (174)
T ss_dssp EEEECC--CTTTSCTTEEEEEEECCHHHHHHHHHHHHHHC
T ss_pred EEECCC--CCCCCCCCceEEEEECCHHHHHHHHHHHHHhC
Confidence 999764 23344577899999999999999999998864
No 10
>2jzx_A Poly(RC)-binding protein 2; PCBP2, KH domains, RNA binding, DNA-binding, nucleus, phosph ribonucleoprotein, RNA-binding, RNA binding protein; NMR {Homo sapiens}
Probab=99.90 E-value=5.4e-24 Score=192.83 Aligned_cols=157 Identities=27% Similarity=0.520 Sum_probs=130.2
Q ss_pred cceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCCC
Q 010373 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENPS 218 (512)
Q Consensus 139 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~~ 218 (512)
.+++++|+||.+.+|.||||+|++|++|+++|||+|+|.+.+ ..+|.|+|+|++++|.+|+.+|.+++.+...
T Consensus 3 ~~~~~~~~vp~~~~g~iIGkgG~~Ik~i~~~tg~~I~i~~~~-------~~~r~v~I~G~~~~v~~A~~~I~~~i~e~~~ 75 (160)
T 2jzx_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-------CPERIITLAGPTNAIFKAFAMIIDKLEEDIS 75 (160)
T ss_dssp CEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCSEEEEECCT-------TTEEEEEEEEEHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEEchhheeeeECCCcHHHHHHHHHHCCEEEEcCCC-------CCceEEEEEeCHHHHHHHHHHHHHHHHhhcc
Confidence 467899999999999999999999999999999999998651 4689999999999999999999998876210
Q ss_pred ccccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCCeEEec
Q 010373 219 RSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVD 298 (512)
Q Consensus 219 ~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~v~ 298 (512)
. . .+. +
T Consensus 76 ~-----------------------------------------~------~~~-----------~---------------- 81 (160)
T 2jzx_A 76 S-----------------------------------------S------MTN-----------S---------------- 81 (160)
T ss_dssp S-----------------------------------------C------CCS-----------S----------------
T ss_pred c-----------------------------------------c------CCC-----------C----------------
Confidence 0 0 000 0
Q ss_pred CCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCchhHHHHHHHhCC
Q 010373 299 SSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRA 378 (512)
Q Consensus 299 ~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa 378 (512)
. . ......+.+|.||.+++|+||||+|++|++|+++|||
T Consensus 82 --~-----------~----------------------------~~~~~~~~~i~vp~~~~g~iIGkgG~~Ik~i~~~tga 120 (160)
T 2jzx_A 82 --T-----------A----------------------------ASRPPVTLRLVVPASQCGSLIGKGGCKIKEIRESTGA 120 (160)
T ss_dssp --S-----------C----------------------------CCCCSEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHSS
T ss_pred --c-----------c----------------------------CCCCCEEEEEEEChhheeeEECCCCHHHHHHHHHhCC
Confidence 0 0 0012367899999999999999999999999999999
Q ss_pred eEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 379 SIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 379 ~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
+|+|.+. ..| .++++.|+|+|++++|+.|+.+|.+.|.+
T Consensus 121 ~I~i~~~-~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 159 (160)
T 2jzx_A 121 QVQVAGD-MLP---NSTERAITIAGIPQSIIECVKQICVVMLE 159 (160)
T ss_dssp EECCCCC-CST---TCCEEEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred eEEECCC-CCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhc
Confidence 9999653 344 46789999999999999999999998876
No 11
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.87 E-value=9.6e-23 Score=204.45 Aligned_cols=231 Identities=13% Similarity=0.120 Sum_probs=156.6
Q ss_pred CCCcceEEEEEeeCCceeEEecCCC--hhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHH
Q 010373 136 GELTLITVRMLVPADQIGCVIGKGG--QVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRL 213 (512)
Q Consensus 136 ~~~~~~~~~llVP~~~vg~IIGk~G--~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l 213 (512)
.....+|+++.||..++++||||+| ++|++|+++|||+|+|++.+.-..........|+|+|.+++|++|+.+|.+++
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enVE~AR~~I~~l~ 104 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDVDRARMLMRRNC 104 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHHHHHHHHHHHSC
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHHHHHHHHHHhcC
Confidence 3467899999999999999999999 99999999999999998763000011134568999999999999999887733
Q ss_pred hcCCCccccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCC
Q 010373 214 HENPSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGA 293 (512)
Q Consensus 214 ~~~~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga 293 (512)
. +++.+.+|...+.. ......|.+ ++.+++
T Consensus 105 P-----------------------------------------------l~i~~elp~~~i~~--~~l~~~I~q-q~~y~V 134 (376)
T 3n89_A 105 H-----------------------------------------------FTVFMALSKMKMPL--HELQAHVRQ-NPIQNV 134 (376)
T ss_dssp E-----------------------------------------------EEEEEECTTCSSCH--HHHHHHHHH-CCCTTC
T ss_pred C-----------------------------------------------ceEEEEccccccCc--chhhhhhcc-ceeCce
Confidence 1 23444455432221 111223444 567999
Q ss_pred eEEecCCCCCC--CCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCc--hhH
Q 010373 294 SIKVDSSGAEG--DDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGG--AII 369 (512)
Q Consensus 294 ~I~v~~~~~~~--~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG--~~I 369 (512)
+|.|+...... ....|+|.|.+.- ...+.+|...+...+.+. .......++..|.|+..+|..|||++| ..|
T Consensus 135 ~I~Fp~~~~~~~~~sd~V~IrG~~~n--v~~akeA~~~Ll~~l~~~--e~~~~~~~s~~v~V~~~~H~~IIGk~G~n~~I 210 (376)
T 3n89_A 135 EMSFVDAPEKNGIVTTYLRITAREKN--QHELIEAAKRLNEILFRE--SPAPENNFTLHFTLSTYYVDQVLGSSSTAQLM 210 (376)
T ss_dssp EEEEEEEC-----CEEEEEEEEEGGG--HHHHHHHHHHHHHHHCC----CCCSSCEEEEEEEEGGGHHHHTCCTTSCCHH
T ss_pred EEEeCCcccccCCCCCEEEEEcChhh--HHHHHHHHHHHHHHHHhh--hcccccceEEEEEeCHHHHHHhhcCCCcchHH
Confidence 99997653221 3567888886410 012334444443333221 111234689999999999999999999 567
Q ss_pred HHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 370 SEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 370 keI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
++|+++|||+|.++..++ +.....+...|+|+|++++|..|..+|+++|=-
T Consensus 211 kkIr~eTGv~I~FP~~~d-~~d~~~~~~~ItItGs~e~V~~Ark~I~~lLPv 261 (376)
T 3n89_A 211 PVIERETTTIISYPCYNN-RNETRGNIYEIKVVGNIDNVLKARRYIMDLLPI 261 (376)
T ss_dssp HHHHHHHTCEEECC----------CCEEEEEEESCHHHHHHHHHHHHHTSEE
T ss_pred HHHHHhhCCEEECCCCCC-cccccCCceEEEEEeCHHHHHHHHHHHHhhCCE
Confidence 999999999999975432 111112456899999999999999999988754
No 12
>3n89_A Defective in GERM LINE development protein 3, ISO; KH domains, RNA binding, cell cycle; 2.79A {Caenorhabditis elegans}
Probab=99.84 E-value=6.5e-21 Score=191.21 Aligned_cols=287 Identities=11% Similarity=0.055 Sum_probs=179.6
Q ss_pred CCCCCeEEEEEecCCceeeeccCCc--hHHHHHHHhhCCeEEecCCC-----CCCCccEEEEEcCCCCcccccCCcccCc
Q 010373 39 IGSEDTVYRYLCPLRKIGSIIGKGG--EIVKQLRSETKSNIRISETV-----PGCDERIVTIYSSSEGTNLFEDSGEFVS 111 (512)
Q Consensus 39 ~~~~~~~~rilvp~~~~g~IIGk~G--~~I~~I~~~tga~I~i~~~~-----~~~~ervv~I~G~~e~~~~~~~~~~~~~ 111 (512)
.....+++++-||..+|++||||+| ++|++|+++|+|+|+|++.. +......|+|+|.+++|
T Consensus 25 ~~~~~VTl~v~Ip~~~Hs~IIGkgG~~sNIkkImeEtgv~I~fPD~~~~~~~~~~ks~~VtItG~~enV----------- 93 (376)
T 3n89_A 25 INPTRVTLNMEFESQYYSLMTSDNGDHENVASIMAETNTLIQLPDRSVGGTTPDPFAQQVTITGYFGDV----------- 93 (376)
T ss_dssp CCTTEEEEEEECCGGGHHHHHSCCSSSCSHHHHHHHHTCEEECCCCCCCSSSCCTTTTEEEEEEEHHHH-----------
T ss_pred ecCCEEEEEEEEchhhhhhhccCCChHHHHHHHHHHhCCeEECCCCcccccCCcCCCCeEEEEcCHHHH-----------
Confidence 4467899999999999999999999 99999999999999999764 12345789999998883
Q ss_pred HHHHHHHHHHHHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCc
Q 010373 112 PAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191 (512)
Q Consensus 112 ~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr 191 (512)
.+|..+|.+. ..+++.+-+|...+.. ..-...|.+ ++..+++|.|....... .....
T Consensus 94 --E~AR~~I~~l---------------~Pl~i~~elp~~~i~~--~~l~~~I~q-q~~y~V~I~Fp~~~~~~---~~~sd 150 (376)
T 3n89_A 94 --DRARMLMRRN---------------CHFTVFMALSKMKMPL--HELQAHVRQ-NPIQNVEMSFVDAPEKN---GIVTT 150 (376)
T ss_dssp --HHHHHHHHHS---------------CEEEEEEECTTCSSCH--HHHHHHHHH-CCCTTCEEEEEEEC--------CEE
T ss_pred --HHHHHHHHhc---------------CCceEEEEccccccCc--chhhhhhcc-ceeCceEEEeCCccccc---CCCCC
Confidence 4555555442 1335556666543322 111234554 67899999997652211 11244
Q ss_pred eEEEecCHHHHHHHHHHHHHHHhcCCCccccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCC
Q 010373 192 LLQVAGEPAVVRKALVQIASRLHENPSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAG 271 (512)
Q Consensus 192 ~v~I~G~~~~V~~A~~~I~~~l~~~~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~ 271 (512)
.|+|+|...+|.+|.+++..++....... ......+++.+.|+..
T Consensus 151 ~V~IrG~~~nv~~akeA~~~Ll~~l~~~e-----------------------------------~~~~~~~s~~v~V~~~ 195 (376)
T 3n89_A 151 YLRITAREKNQHELIEAAKRLNEILFRES-----------------------------------PAPENNFTLHFTLSTY 195 (376)
T ss_dssp EEEEEEEGGGHHHHHHHHHHHHHHHCC-------------------------------------CCCSSCEEEEEEEEGG
T ss_pred EEEEEcChhhHHHHHHHHHHHHHHHHhhh-----------------------------------cccccceEEEEEeCHH
Confidence 79999999777666555555443311100 0123457889999999
Q ss_pred CCcccccCCCccc--cchhhhcCCeEEecCCCCC----CCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCc
Q 010373 272 NIGGVIGKGGGII--KQIRQESGASIKVDSSGAE----GDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDP 345 (512)
Q Consensus 272 ~vg~IIGk~G~~I--k~I~~~tga~I~v~~~~~~----~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 345 (512)
+|..|||++|.++ ++|+++|||+|.||+..+. .....|+|+|.+ ..+++|.+....+ -
T Consensus 196 ~H~~IIGk~G~n~~IkkIr~eTGv~I~FP~~~d~~d~~~~~~~ItItGs~------e~V~~Ark~I~~l----------L 259 (376)
T 3n89_A 196 YVDQVLGSSSTAQLMPVIERETTTIISYPCYNNRNETRGNIYEIKVVGNI------DNVLKARRYIMDL----------L 259 (376)
T ss_dssp GHHHHTCCTTSCCHHHHHHHHHTCEEECC---------CCEEEEEEESCH------HHHHHHHHHHHHT----------S
T ss_pred HHHHhhcCCCcchHHHHHHHhhCCEEECCCCCCcccccCCceEEEEEeCH------HHHHHHHHHHHhh----------C
Confidence 9999999999554 9999999999999975442 234578899865 3444444332222 2
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCC---ceEEEEEcCHHHHHH
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYED---EEMVQITGSLDVASS 410 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~---~r~V~I~G~~~~v~~ 410 (512)
.+...|.++.+-.-.-.-.--..|..+.++.++.|.|.++...|..--++ -..|.|+.-.-++..
T Consensus 260 Pv~l~Fd~~~~d~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~~s~e~n~~~ 327 (376)
T 3n89_A 260 PISMCFNIKNTDMAEPSRVSDRNIHMIIDESGIILKMTPSVYEPADLLSGEVPLNCASLRSKEFNIKK 327 (376)
T ss_dssp EEEEEEEEEGGGBC--------CBEEEECTTSCEEEEEEEEECCSSSSCCCEEEEEEEEEEEGGGHHH
T ss_pred CEEEEEecCCcccccccccchhHHHHHHHhcCeEEEEeecCCCchhhcccccccceEEEEEEeccHHH
Confidence 36666766654333323333334445668889999997753323100011 135778875555444
No 13
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.74 E-value=3.3e-18 Score=151.24 Aligned_cols=139 Identities=19% Similarity=0.242 Sum_probs=100.6
Q ss_pred cceEEEecCCCCCcccccCCCccccchhhhcCCeEEecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccC
Q 010373 261 EFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTER 340 (512)
Q Consensus 261 ~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~ 340 (512)
.++.++.||.+.+|.+||++|++|++|++++|+.|...+.. .+.++...... ..+..+..+..
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~gI~ii~~~~~---~~~~i~~~~~p------~~v~~~~~~l~-------- 65 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPGVTAIDLDED---TCTFHIYGEDQ------DAVKKARSFLE-------- 65 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTTEEEEEEETT---TTEEEEEESSH------HHHHHHHHHHC--------
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHCCeEeccCCC---chheeeccCCH------HHHHHHHHhhh--------
Confidence 46789999999999999999999999999999444333322 33333333211 23333322211
Q ss_pred CCCCceeEEEEEecCCceeeeecCCchhHHHHHHHhCC-eEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 010373 341 ESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRA-SIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRL 419 (512)
Q Consensus 341 ~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa-~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l 419 (512)
..+.++.||.+++|++|||+|++|++|++.||| +|+|.+.++......+..+.|+|+|++++|+.|+.+|.++|
T Consensus 66 -----~~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~~~~~~~~~vtI~G~~~~v~~Ak~li~~~l 140 (144)
T 2qnd_A 66 -----FAEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNVPQEEGMVPFVFVGTKDSIANATVLLDYHL 140 (144)
T ss_dssp -----EEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCCCCCTTEEEEEEEEEHHHHHHHHHHHHHHH
T ss_pred -----cceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCccccCCeeEEEEEeCHHHHHHHHHHHHHHH
Confidence 124889999999999999999999999999997 99998754321111112246899999999999999999998
Q ss_pred hh
Q 010373 420 RA 421 (512)
Q Consensus 420 ~~ 421 (512)
..
T Consensus 141 ~~ 142 (144)
T 2qnd_A 141 NY 142 (144)
T ss_dssp HT
T ss_pred Hh
Confidence 64
No 14
>2qnd_A FMR1 protein; KH domain, eukaryotic KH domains, tandem KH domains, type I domains, fragIle X mental retardation protein, RNA BI protein; 1.90A {Homo sapiens} PDB: 2fmr_A
Probab=99.73 E-value=7.8e-18 Score=148.85 Aligned_cols=136 Identities=19% Similarity=0.258 Sum_probs=100.3
Q ss_pred CeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEc-CCCCcccccCCcccCcHHHHHHHHHH
Q 010373 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYS-SSEGTNLFEDSGEFVSPAQDALFRVH 121 (512)
Q Consensus 43 ~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G-~~e~~~~~~~~~~~~~~a~~a~~~i~ 121 (512)
.++.+|+||.+.+|++||++|++|++|+++++ |++.+.. ..+++ +++.+ +++. +.++. .++
T Consensus 3 ~~~~~~~Vp~~~vG~~IG~~G~~I~~i~~e~g--I~ii~~~-~~~~~-~i~~~~~p~~-------------v~~~~-~~l 64 (144)
T 2qnd_A 3 RFHEQFIVREDLMGLAIGTHGANIQQARKVPG--VTAIDLD-EDTCT-FHIYGEDQDA-------------VKKAR-SFL 64 (144)
T ss_dssp -CEEEEECCGGGHHHHHCGGGHHHHHHHTSTT--EEEEEEE-TTTTE-EEEEESSHHH-------------HHHHH-HHH
T ss_pred ceEEEEEECCcceeeEECCChhHHHHHHHHHC--CeEeccC-CCchh-eeeccCCHHH-------------HHHHH-Hhh
Confidence 56789999999999999999999999999999 5443221 12334 44444 3332 12221 111
Q ss_pred HHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCc-eEEEeecCCCCcccCCCCc--eEEEecC
Q 010373 122 DRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRA-QIRILKDEHLPLCALSFDE--LLQVAGE 198 (512)
Q Consensus 122 ~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga-~I~i~~~~~~p~~~~~~dr--~v~I~G~ 198 (512)
. + .++++.||.+++|++|||+|++|+.|++.||| +|+|.++++... ...++ .|+|+|+
T Consensus 65 ~------~-----------~e~~v~Vp~~~~g~~IGK~G~nIr~i~~~tG~~~I~i~~~~~~~~--~~~~~~~~vtI~G~ 125 (144)
T 2qnd_A 65 E------F-----------AEDVIQVPRNLVGKVIGKNGKLIQEIVDKSGVVRVRIEAENEKNV--PQEEGMVPFVFVGT 125 (144)
T ss_dssp C------E-----------EEEEEEEEGGGHHHHHCGGGHHHHHHHHHHTCSEEEEEEECTTCC--CCCTTEEEEEEEEE
T ss_pred h------c-----------ceEEEEECHHHcCeeECCCCHHHHHHHHHHCCEEEEEcCCCCCCc--cccCCeeEEEEEeC
Confidence 1 0 13789999999999999999999999999997 999998643211 12344 4899999
Q ss_pred HHHHHHHHHHHHHHHhc
Q 010373 199 PAVVRKALVQIASRLHE 215 (512)
Q Consensus 199 ~~~V~~A~~~I~~~l~~ 215 (512)
+++|++|..+|.++|.+
T Consensus 126 ~~~v~~Ak~li~~~l~~ 142 (144)
T 2qnd_A 126 KDSIANATVLLDYHLNY 142 (144)
T ss_dssp HHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHHHh
Confidence 99999999999999865
No 15
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.65 E-value=1.5e-16 Score=149.51 Aligned_cols=150 Identities=19% Similarity=0.141 Sum_probs=105.5
Q ss_pred CeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHHH
Q 010373 43 DTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHD 122 (512)
Q Consensus 43 ~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~~ 122 (512)
.-..++.||.+.++.|||++|++|++|+++|||+|+|+.. ++.|+|+++...- ....++.|...|.+
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~-----~g~V~I~~~~~t~--------d~~~i~kA~~~I~~ 99 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE-----TGEVWITSTKETE--------DPLAVWKARDIVLA 99 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT-----TCEEEEEECTTCC--------SHHHHHHHHHHHHH
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC-----CCEEEEecCCCCC--------CHHHHHHHHHHHHH
Confidence 3456999999999999999999999999999999999743 6779999864210 01125566666555
Q ss_pred HHhhhcccCCcccCCCcceEEEEEee-----C------CceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCc
Q 010373 123 RIVAEDSLADDEFGELTLITVRMLVP-----A------DQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDE 191 (512)
Q Consensus 123 ~i~~~~~~~~~~~~~~~~~~~~llVP-----~------~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr 191 (512)
.+.....+....-.........+-++ . ..+|+||||+|.+|+.|++.|||+|.|.. +
T Consensus 100 i~rg~~~e~g~~ll~dd~~~e~i~i~~~~v~~~~~~~~r~~GriIGk~G~tik~ie~~Tg~~I~v~~------------~ 167 (219)
T 2e3u_A 100 IGRGFSPERAFRLLNEGEYLEIINLTDIIIGNEKNALPRVRGRIIGRKGRTRQIIEEMSGASVSVYG------------K 167 (219)
T ss_dssp HHTTCCHHHHGGGGSTTCEEEEEEGGGCC------CHHHHHHHHHCGGGHHHHHHHHHHCCEEEEET------------T
T ss_pred HhccCCccccceeccCCccceeEEcccccccCCchhhhhhhheeECCCchHHHHHHHHhCceEEECC------------e
Confidence 43110000000000001111112222 1 26899999999999999999999999953 4
Q ss_pred eEEEecCHHHHHHHHHHHHHHHhcCC
Q 010373 192 LLQVAGEPAVVRKALVQIASRLHENP 217 (512)
Q Consensus 192 ~v~I~G~~~~V~~A~~~I~~~l~~~~ 217 (512)
.|.|.|+.++|+.|..+|.+++...+
T Consensus 168 ~v~i~G~~~~i~~A~~~i~~li~g~~ 193 (219)
T 2e3u_A 168 TVAIIGNPIQIEIAKTAIEKLARGSP 193 (219)
T ss_dssp EEEEEECHHHHHHHHHHHHHHHTTCC
T ss_pred EEEEEeCHHHHHHHHHHHHHHHcCCC
Confidence 69999999999999999999996643
No 16
>2e3u_A PH-DIM2P, hypothetical protein PH1566; PRE-ribosomal RNA processing factor, RNA binding protein; 2.30A {Pyrococcus horikoshii} PDB: 3aev_B
Probab=99.63 E-value=1.1e-15 Score=143.53 Aligned_cols=154 Identities=21% Similarity=0.222 Sum_probs=109.1
Q ss_pred ceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecC-----HHHHHHHHHHHHHHHh
Q 010373 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGE-----PAVVRKALVQIASRLH 214 (512)
Q Consensus 140 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~-----~~~V~~A~~~I~~~l~ 214 (512)
....++.||.+.++.|||++|++|+.|+++|||+|.|..+ ++.|+|.++ ++++.+|..+|..+..
T Consensus 33 P~i~~i~IP~~kig~lIG~gGk~Ik~I~e~tgvkI~I~~~----------~g~V~I~~~~~t~d~~~i~kA~~~I~~i~r 102 (219)
T 2e3u_A 33 KQEEYVKIPKDRIAVLIGKKGQTKKEIEKRTKTKITIDSE----------TGEVWITSTKETEDPLAVWKARDIVLAIGR 102 (219)
T ss_dssp CCEEEEECCHHHHHHHHCGGGHHHHHHHHHHTEEEEECTT----------TCEEEEEECTTCCSHHHHHHHHHHHHHHHT
T ss_pred CEEEEEEeCHHHhhhhhcccHHHHHHHHHHHCcEEEEEcC----------CCEEEEecCCCCCCHHHHHHHHHHHHHHhc
Confidence 3467899999999999999999999999999999999633 456888875 6999999999999875
Q ss_pred cCCCccccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCCe
Q 010373 215 ENPSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGAS 294 (512)
Q Consensus 215 ~~~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~ 294 (512)
.........++ .++..+. .
T Consensus 103 g~~~e~g~~ll---------------------------------~dd~~~e----------------------------~ 121 (219)
T 2e3u_A 103 GFSPERAFRLL---------------------------------NEGEYLE----------------------------I 121 (219)
T ss_dssp TCCHHHHGGGG---------------------------------STTCEEE----------------------------E
T ss_pred cCCccccceec---------------------------------cCCccce----------------------------e
Confidence 31100000000 0000000 0
Q ss_pred EEecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCchhHHHHHH
Q 010373 295 IKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRS 374 (512)
Q Consensus 295 I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~ 374 (512)
+.+..- .+...-..+...+|+||||+|++|+.|++
T Consensus 122 i~i~~~---------------------------------------------~v~~~~~~~~r~~GriIGk~G~tik~ie~ 156 (219)
T 2e3u_A 122 INLTDI---------------------------------------------IIGNEKNALPRVRGRIIGRKGRTRQIIEE 156 (219)
T ss_dssp EEGGGC---------------------------------------------C------CHHHHHHHHHCGGGHHHHHHHH
T ss_pred EEcccc---------------------------------------------cccCCchhhhhhhheeECCCchHHHHHHH
Confidence 000000 00000011234789999999999999999
Q ss_pred HhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 375 ATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 375 ~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
.|||+|.|.. +.|+|.|++++++.|..+|+++|..
T Consensus 157 ~Tg~~I~v~~------------~~v~i~G~~~~i~~A~~~i~~li~g 191 (219)
T 2e3u_A 157 MSGASVSVYG------------KTVAIIGNPIQIEIAKTAIEKLARG 191 (219)
T ss_dssp HHCCEEEEET------------TEEEEEECHHHHHHHHHHHHHHHTT
T ss_pred HhCceEEECC------------eEEEEEeCHHHHHHHHHHHHHHHcC
Confidence 9999999952 3799999999999999999999965
No 17
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.55 E-value=5.8e-15 Score=123.52 Aligned_cols=74 Identities=20% Similarity=0.286 Sum_probs=64.5
Q ss_pred eEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 347 ~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
.+.+|+||.+++|+||||+|++|++|+++|||+|+|.+.. .| ..+.++++|+|+|++++|++|+.+|.++|.+.
T Consensus 7 ~~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 7 GEMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CCEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred CeEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999997542 22 23457899999999999999999999998663
No 18
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.53 E-value=1.4e-14 Score=113.66 Aligned_cols=73 Identities=25% Similarity=0.357 Sum_probs=63.9
Q ss_pred eEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 347 ~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
.+.+|.||.+++|+||||+|++|++|++.|||+|+|.+..+.. .++.++.|+|+|++++|+.|+.+|.++|.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~--~~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCS--TTCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCC--CCCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5789999999999999999999999999999999997653322 246789999999999999999999998754
No 19
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.53 E-value=9.3e-15 Score=113.53 Aligned_cols=70 Identities=23% Similarity=0.437 Sum_probs=64.2
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
..++.+|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+|.|+|+|++++|..|+.+|.++|++
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~-------~~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEG-------NCPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS-------CCSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecC-------CCCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 35789999999999999999999999999999999999653 24689999999999999999999999976
No 20
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.51 E-value=3.9e-14 Score=112.73 Aligned_cols=73 Identities=29% Similarity=0.514 Sum_probs=65.5
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .| +++++.|+|+|++++|+.|+.+|.+++++.
T Consensus 5 ~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~~ 77 (82)
T 1zzk_A 5 PIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 77 (82)
T ss_dssp CCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCT--TS---CSSEEEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCC--CC---CCCceEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 45889999999999999999999999999999999999642 22 467899999999999999999999999874
No 21
>2axy_A Poly(RC)-binding protein 2; protein-DNA complex, DNA binding protein-DNA complex; 1.70A {Homo sapiens} SCOP: d.51.1.1 PDB: 2pqu_A 2py9_A 1ztg_A 3vke_A*
Probab=99.51 E-value=1.2e-14 Score=112.84 Aligned_cols=70 Identities=29% Similarity=0.571 Sum_probs=65.0
Q ss_pred cceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 139 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
..++++|+||.+.+|.||||+|++|++|+++|||+|+|.+++ ..+|+|+|+|++++|.+|+.+|.++|.+
T Consensus 3 ~~~~~~i~ip~~~ig~iIGkgG~~Ik~I~~~tga~I~i~~~~-------~~er~v~I~G~~~~v~~A~~~I~~~l~e 72 (73)
T 2axy_A 3 VTLTIRLLMHGKEVGSIIGKKGESVKKMREESGARINISEGN-------CPERIITLAGPTNAIFKAFAMIIDKLEE 72 (73)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECSSC-------CSEEEEEEEECHHHHHHHHHHHHHHHHC
T ss_pred ceEEEEEEEChhHeeeEECCCCHHHHHHHHHHCCEEEEecCC-------CCcEEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 457999999999999999999999999999999999998751 4689999999999999999999999986
No 22
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.50 E-value=2e-14 Score=112.72 Aligned_cols=73 Identities=34% Similarity=0.528 Sum_probs=65.5
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .| +++++.|+|+|++++|+.|+.+|.++|++.
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~--~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP--VE---GSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC--CT---TCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC--CC---CCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 35789999999999999999999999999999999999652 22 578999999999999999999999998763
No 23
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.50 E-value=2.9e-14 Score=113.52 Aligned_cols=73 Identities=36% Similarity=0.500 Sum_probs=64.5
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. . .+++++.|+|+|++++|+.|+.+|.+++.+.
T Consensus 4 ~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~--~---~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 4 SQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP--V---EGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC--C---TTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC--C---CCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 35789999999999999999999999999999999999652 2 2567999999999999999999999998775
No 24
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.48 E-value=1.2e-13 Score=126.46 Aligned_cols=151 Identities=19% Similarity=0.223 Sum_probs=110.2
Q ss_pred EEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEe-----cCHHHHHHHHHHHHHHHhcC
Q 010373 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVA-----GEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 142 ~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~-----G~~~~V~~A~~~I~~~l~~~ 216 (512)
..+++||...+|.|||++|++++.|+++++++|++... ++.|+|. |++.++.+|..+|..+.+..
T Consensus 5 ~~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~----------~~~V~i~t~~~t~dp~~i~KA~dlI~ai~rgf 74 (191)
T 1tua_A 5 RIYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE----------NSMVIVEPEAEGIPPVNLMKAAEVVKAISLGF 74 (191)
T ss_dssp CEEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT----------TTEEEEEESSTTSCHHHHHHHHHHHHHHHHTC
T ss_pred ceEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC----------CCeEEEEeCCCCCCHHHHHHHHHHHHHHHcCC
Confidence 46899999999999999999999999999999999643 5678888 99999999999999888753
Q ss_pred CCccccccccCCCCccCCCCcccCCCCcCCCCCCCcccCccccccceEEEecCCCCCcccccCCCccccchhhhcCCeEE
Q 010373 217 PSRSQHLLLSSSSNIYQSSGVYLSAPLVGSYGNYSARRDEASAREFSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIK 296 (512)
Q Consensus 217 ~~~~~~~~~~~~~~~~~~gg~~~~~p~~~~~~~~~~~~~~~~~~~~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~ 296 (512)
+......+ ..+++.+.
T Consensus 75 ~~e~A~~L---------------------------------l~Dd~~~e------------------------------- 90 (191)
T 1tua_A 75 PPEKAFRL---------------------------------LEEDQILV------------------------------- 90 (191)
T ss_dssp CHHHHGGG---------------------------------GSTTEEEE-------------------------------
T ss_pred CHHHhhhc---------------------------------ccCcceeE-------------------------------
Confidence 21100000 00000000
Q ss_pred ecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEEEEecCCceeeeecCCchhHHHHHHHh
Q 010373 297 VDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTRILVPSAQIGCLIGRGGAIISEMRSAT 376 (512)
Q Consensus 297 v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~T 376 (512)
++.+. ..... . . ..+..+.|+||||+|.+|+.|+..|
T Consensus 91 -----------~i~i~-------------~~~~~------------~-~------~~~~r~~GrIIGk~G~tik~iE~~T 127 (191)
T 1tua_A 91 -----------VVDLK-------------QVVGD------------S-Q------NHLKRIKGRIIGEGGRARRTIEEMT 127 (191)
T ss_dssp -----------EEETH-------------HHHTT------------C-H------HHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred -----------EEEcc-------------ccccc------------C-c------hhHHHHhhheeCCCccHHHHHHHHH
Confidence 00000 00000 0 0 0124578999999999999999999
Q ss_pred CCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 377 RASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 377 Ga~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
||+|.|.. ..|.|.|++++++.|...|+.++..
T Consensus 128 g~~I~v~~------------~~v~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 128 DTYINVGE------------YEVAIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp TCEEEECS------------SEEEEEEEHHHHHHHHHHHHHHHTT
T ss_pred CceEEEcC------------CEEEEEeChHHHHHHHHHHHHHHcC
Confidence 99999942 2899999999999999999998864
No 25
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.48 E-value=2.7e-14 Score=114.97 Aligned_cols=77 Identities=25% Similarity=0.318 Sum_probs=67.1
Q ss_pred eEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhchhc
Q 010373 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTFE 425 (512)
Q Consensus 347 ~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~~ 425 (512)
.+.+|.||.+++|+||||+|++|++|+++|||+|+|.+..+.. .++.++.|+|+|++++|+.|+.+|.++|.+....
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~--~g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~~~~ 79 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFL--PGTRNRRVTITGSPAATQAAQYLISQRVTYEQGV 79 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBS--TTSCEEEEEEESSHHHHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCC--CCCCceEEEEEcCHHHHHHHHHHHHHHHhccccc
Confidence 5789999999999999999999999999999999997643221 2467899999999999999999999999885543
No 26
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.48 E-value=5.4e-14 Score=117.03 Aligned_cols=71 Identities=21% Similarity=0.351 Sum_probs=63.3
Q ss_pred eEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 347 ITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 347 ~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
.+.+|.||.+++|+||||+|++||+|+++|||+|+|.+++ + ...+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 4789999999999999999999999999999999996532 1 356899999999999999999999999874
No 27
>1tua_A Hypothetical protein APE0754; structural genomics, protein structure initiative, MCSG, four layers alpha-beta sandwich, PSI; 1.50A {Aeropyrum pernix} SCOP: d.51.1.1 d.51.1.1
Probab=99.47 E-value=4.3e-14 Score=129.43 Aligned_cols=143 Identities=16% Similarity=0.140 Sum_probs=102.9
Q ss_pred EEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHHHHHh
Q 010373 46 YRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIV 125 (512)
Q Consensus 46 ~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~~~i~ 125 (512)
++++||...+|.|||++|++++.|+++++++|.++.. ++.|+|+.+.+... ...++.|...|.+...
T Consensus 6 ~~i~VP~~rvg~liGk~g~~~k~i~e~~g~~i~id~~-----~~~V~i~t~~~t~d--------p~~i~KA~dlI~ai~r 72 (191)
T 1tua_A 6 IYVKVKPERLGAVIGPRGEVKAEIMRRTGTVITVDTE-----NSMVIVEPEAEGIP--------PVNLMKAAEVVKAISL 72 (191)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTEEEEEETT-----TTEEEEEESSTTSC--------HHHHHHHHHHHHHHHH
T ss_pred eEEECCHHHhhHHHhcCHhHHHHHHHHHCcEEEEEcC-----CCeEEEEeCCCCCC--------HHHHHHHHHHHHHHHc
Confidence 6899999999999999999999999999999999754 78899985433210 1124455544433222
Q ss_pred hhcccCCcc-cCCCcceEEE-EEee----------CCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceE
Q 010373 126 AEDSLADDE-FGELTLITVR-MLVP----------ADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELL 193 (512)
Q Consensus 126 ~~~~~~~~~-~~~~~~~~~~-llVP----------~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v 193 (512)
.+..++. .-..+.+.+. +-++ ...+|+||||+|.+|+.|+..|||+|.|.. +.|
T Consensus 73 --gf~~e~A~~Ll~Dd~~~e~i~i~~~~~~~~~~~~r~~GrIIGk~G~tik~iE~~Tg~~I~v~~------------~~v 138 (191)
T 1tua_A 73 --GFPPEKAFRLLEEDQILVVVDLKQVVGDSQNHLKRIKGRIIGEGGRARRTIEEMTDTYINVGE------------YEV 138 (191)
T ss_dssp --TCCHHHHGGGGSTTEEEEEEETHHHHTTCHHHHHHHHHHHHCGGGHHHHHHHHHHTCEEEECS------------SEE
T ss_pred --CCCHHHhhhcccCcceeEEEEcccccccCchhHHHHhhheeCCCccHHHHHHHHHCceEEEcC------------CEE
Confidence 1111000 0001122233 3344 236899999999999999999999999953 369
Q ss_pred EEecCHHHHHHHHHHHHHHHhc
Q 010373 194 QVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 194 ~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
.|.|+.++++.|...|.+++..
T Consensus 139 ~i~G~~~~i~~Ar~~i~~li~g 160 (191)
T 1tua_A 139 AIIGDYERAMAAKQAIEMLAEG 160 (191)
T ss_dssp EEEEEHHHHHHHHHHHHHHHTT
T ss_pred EEEeChHHHHHHHHHHHHHHcC
Confidence 9999999999999999999965
No 28
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.46 E-value=6e-14 Score=113.41 Aligned_cols=75 Identities=29% Similarity=0.530 Sum_probs=66.9
Q ss_pred CCceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 343 GDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 343 ~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
....++.+|.||.+++|+||||+|++|++|+++|||+|+|.+. .| +++++.|+|+|++++|+.|+.+|.+++.+.
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e~ 84 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQY 84 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 3457899999999999999999999999999999999999642 22 467899999999999999999999999874
No 29
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.45 E-value=2e-13 Score=109.38 Aligned_cols=74 Identities=19% Similarity=0.333 Sum_probs=64.6
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
...+.+|.||.+++|+||||+|++|++|+++|||+|.|.+....+ ...+|.|+|+|++++++.|+.+|.+++++
T Consensus 12 ~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 12 NGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp SSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 346789999999999999999999999999999999997643222 46789999999999999999999998753
No 30
>1dtj_A RNA-binding neurooncological ventral antigen 2; KH domain, alpha-beta fold RNA-binding motif, immune system; 2.00A {Homo sapiens} SCOP: d.51.1.1 PDB: 1dt4_A
Probab=99.45 E-value=8.5e-14 Score=109.15 Aligned_cols=72 Identities=31% Similarity=0.499 Sum_probs=64.1
Q ss_pred eEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCC-CCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH-LPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 141 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
.+++|+||.+.+|+||||+|++|++|+++|||+|+|.++++ .| .+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 3 ~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~~---~~~~~~v~I~G~~~~v~~A~~~I~~~i~e 75 (76)
T 1dtj_A 3 ELVEMAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---GTRNRRVTITGSPAATQAAQYLISQRVTY 75 (76)
T ss_dssp EEEEEEEETTTHHHHHCSTTHHHHHHHHHHCCEEEECCTTCCST---TCCEEEEEEEESHHHHHHHHHHHHHHCC-
T ss_pred eEEEEEEChHHcceEECCCchHHHHHHHHhCCEEEECcCCCCCC---CCceeEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 58899999999999999999999999999999999987632 23 36789999999999999999999998764
No 31
>1wvn_A Poly(RC)-binding protein 1; KH domain, RNA binding domain, RNA binding protein; 2.10A {Homo sapiens} SCOP: d.51.1.1
Probab=99.45 E-value=7.2e-14 Score=111.19 Aligned_cols=74 Identities=30% Similarity=0.446 Sum_probs=65.5
Q ss_pred CcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 138 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
...++++|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+.++.|+|+|++++|.+|+.+|.+++.++
T Consensus 3 g~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~sga~I~i~~~-----~~~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (82)
T 1wvn_A 3 GSQTTHELTIPNNLIGCIIGRQGANINEIRQMSGAQIKIANP-----VEGSSGRQVTITGSAASISLAQYLINARLSSE 76 (82)
T ss_dssp TTCEEEEEEEEGGGHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHTC--
T ss_pred CCcEEEEEEEchHhccceeCCCchhHHHHHHHhCCEEEEecC-----CCCCCceEEEEEcCHHHHHHHHHHHHHHHHhh
Confidence 356789999999999999999999999999999999999864 22367999999999999999999999999875
No 32
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.45 E-value=1.2e-13 Score=112.39 Aligned_cols=73 Identities=26% Similarity=0.388 Sum_probs=65.6
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
..++.+|.||.+++|+||||+|++|++|+++|||+|+|.+.. + +..++.|+|+|++++|+.|+.+|.++|++.
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~--~---g~~~r~v~I~G~~e~v~~A~~~I~~~i~~~ 85 (92)
T 1x4n_A 13 SVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDS--G---GLPERSCMLTGTPESVQSAKRLLDQIVEKG 85 (92)
T ss_dssp CCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCC--T---TCSEEEEEEEECHHHHHHHHHHHHHHHHHT
T ss_pred CCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCC--C---CCCccEEEEEeCHHHHHHHHHHHHHHHHhc
Confidence 457899999999999999999999999999999999997532 2 457899999999999999999999999874
No 33
>2p2r_A Poly(RC)-binding protein 2; protein-DNA complex, RNA and DNA binding protein/DNA complex; 1.60A {Homo sapiens}
Probab=99.44 E-value=6.6e-14 Score=109.74 Aligned_cols=73 Identities=32% Similarity=0.490 Sum_probs=66.0
Q ss_pred cceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 139 TLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 139 ~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
..++++|+||.+++|+||||+|++|++|+++|||+|+|.+. +..+.++.|+|+|++++|.+|+.+|.+++.++
T Consensus 3 ~~~~~~i~Ip~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~-----~~~~~~~~v~I~G~~~~v~~A~~~I~~~i~~E 75 (76)
T 2p2r_A 3 QTTSHELTIPNDLIGCIIGRQGAKINEIRQMSGAQIKIANP-----VEGSTDRQVTITGSAASISLAQYLINVRLSSE 75 (76)
T ss_dssp CCEEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCC-----CTTCSEEEEEEEECHHHHHHHHHHHHHHHTTC
T ss_pred CceEEEEEEChHHcceEECCCChHHHHHHHHHCCEEEEcCC-----CCCCCeEEEEEEeCHHHHHHHHHHHHHHHHcc
Confidence 45789999999999999999999999999999999999863 22477999999999999999999999998763
No 34
>1zzk_A Heterogeneous nuclear ribonucleoprotein K; KH domian, alpha-beta fold, DNA binding protein; 0.95A {Homo sapiens} SCOP: d.51.1.1 PDB: 1zzj_A 1zzi_A
Probab=99.43 E-value=2e-13 Score=108.60 Aligned_cols=73 Identities=32% Similarity=0.524 Sum_probs=63.7
Q ss_pred CCCCeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHH
Q 010373 40 GSEDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFR 119 (512)
Q Consensus 40 ~~~~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~ 119 (512)
+...++++|+||.+++|.||||+|++|++|+++|+|+|+|++..++..+|+|+|+|++++ +..|..+
T Consensus 3 ~g~~~~~~i~Vp~~~vg~iIGkgG~~Ik~I~~~tga~I~i~~~~~~~~~~~v~I~G~~~~-------------v~~A~~~ 69 (82)
T 1zzk_A 3 MGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEPLEGSEDRIITITGTQDQ-------------IQNAQYL 69 (82)
T ss_dssp CCCCEEEEEEEETTTGGGGTCGGGHHHHHHHHHHCCEEEECCTTSCSSEEEEEEEECHHH-------------HHHHHHH
T ss_pred CCCeEEEEEEEChHhcCeeECCCchHHHHHHHHHCCEEEEcCCCCCCCceEEEEEeCHHH-------------HHHHHHH
Confidence 456789999999999999999999999999999999999998878889999999998766 4666666
Q ss_pred HHHHHh
Q 010373 120 VHDRIV 125 (512)
Q Consensus 120 i~~~i~ 125 (512)
|.+.+.
T Consensus 70 I~~~i~ 75 (82)
T 1zzk_A 70 LQNSVK 75 (82)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 666554
No 35
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.43 E-value=7.6e-14 Score=110.71 Aligned_cols=69 Identities=20% Similarity=0.315 Sum_probs=61.7
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
...+.+|.||.+++|+||||+|++||+|+++|||+|+|++. ++++.|+|+|++++|+.|+.+|.+.+..
T Consensus 8 ~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 8 GQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 45788999999999999999999999999999999999643 2357899999999999999999997654
No 36
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.42 E-value=1.5e-13 Score=112.20 Aligned_cols=74 Identities=19% Similarity=0.354 Sum_probs=65.5
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
..++.+|+||.+++|+||||+|++|++|+++|||+|+|.+... +. ..++|.|+|+|++++|+.|+.+|.++|++
T Consensus 13 ~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~~--~~~~r~v~I~G~~~~v~~A~~~I~~~i~~ 86 (94)
T 1x4m_A 13 GNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGP-QN--TGADKPLRITGDPYKVQQAKEMVLELIRD 86 (94)
T ss_dssp CCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCC-CS--SCSCEEEEEEECTTTHHHHHHHHHHHHCC
T ss_pred CcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCC-CC--CCCceEEEEEeCHHHHHHHHHHHHHHHhc
Confidence 5688999999999999999999999999999999999975432 11 34789999999999999999999999976
No 37
>2opv_A KHSRP protein; KH domain, RNA binding protein, KSRP; NMR {Homo sapiens}
Probab=99.41 E-value=4e-13 Score=107.60 Aligned_cols=75 Identities=25% Similarity=0.476 Sum_probs=66.0
Q ss_pred CcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 138 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
....+.+|.||.+.+|+||||+|++|++|+++|||+|.|.++...+ .+.+|.|+|+|++++|.+|+.+|.+++.+
T Consensus 11 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~i~~~~~~~---~~~er~v~I~G~~~~v~~A~~~I~~i~~e 85 (85)
T 2opv_A 11 QNGTVQEIMIPAGKAGLVIGKGGETIKQLQERAGVKMILIQDGSQN---TNVDKPLRIIGDPYKVQQACEMVMDILRE 85 (85)
T ss_dssp CSSEEEEEEECTTTHHHHHTTTTHHHHHHHHHHTCEEEECSSSCSS---TTSCEEEEEEECHHHHHHHHHHHHHHHTC
T ss_pred CCCEEEEEEeChhheeeeECCCCHHHHHHHHHHCCEEEEcCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHhcC
Confidence 3456889999999999999999999999999999999998763222 36799999999999999999999998864
No 38
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.40 E-value=6.2e-13 Score=110.66 Aligned_cols=77 Identities=19% Similarity=0.322 Sum_probs=66.6
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhchh
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTF 424 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~ 424 (512)
...+.+|.||.+++|+||||+|++|++|+++|||+|+|.+... + ...+++.|+|+|++++|+.|+.+|.++|.+...
T Consensus 13 ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~-~--~~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~~ 89 (104)
T 1we8_A 13 TPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE-G--TLLLSRLIKISGTQKEVAAAKHLILEKVSEDEE 89 (104)
T ss_dssp CEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC-C--SSSSEEEEEEEEEHHHHHHHHHHHHHHHHHHHH
T ss_pred CCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC-C--CCCCcceEEEEcCHHHHHHHHHHHHHHHhhChH
Confidence 4578999999999999999999999999999999999975422 1 124689999999999999999999999977543
No 39
>1j5k_A Heterogeneous nuclear ribonucleoprotein K; single-stranded DNA binding protein, transcription factor, hnRNP K, CT element, C-MYC oncogene; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1khm_A
Probab=99.39 E-value=2.1e-13 Score=110.22 Aligned_cols=74 Identities=31% Similarity=0.504 Sum_probs=66.8
Q ss_pred CCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 137 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
....++++|+||.+.+|.||||+|++|++|+++|||+|+|.+. .| .+.++.|+|+|++++|.+|+.+|.+++.+
T Consensus 10 ~~~~~~~~i~Ip~~~vg~IIGkgG~~Ik~I~~~tga~I~I~~~--~~---~~~~~~v~I~G~~e~v~~A~~~I~~~i~e 83 (89)
T 1j5k_A 10 GGPIITTQVTIPKDLAGSIIGKGGQRIKQIRHESGASIKIDEP--LE---GSEDRIITITGTQDQIQNAQYLLQNSVKQ 83 (89)
T ss_dssp CCCEEEEEEEEEHHHHHHHHCGGGHHHHHHHHHTCCEEEECSC--CS---SSSEEEEEEEEEHHHHHHHHHHHHHHHHH
T ss_pred CCCeEEEEEEEChhhcceeECCCCHhHHHHHHHhCCeEEecCC--CC---CCCccEEEEEcCHHHHHHHHHHHHHHHHh
Confidence 4567899999999999999999999999999999999999753 23 36789999999999999999999999987
No 40
>1x4m_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.38 E-value=2.5e-13 Score=110.87 Aligned_cols=77 Identities=22% Similarity=0.436 Sum_probs=68.0
Q ss_pred CCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 137 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
....++++|+||.+.+|+||||+|++|++|+++|||+|+|.++.... ...+|.|+|+|++++|.+|+.+|.+++.+.
T Consensus 11 ~p~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~---~~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 87 (94)
T 1x4m_A 11 GPGNAVQEIMIPASKAGLVIGKGGETIKQLQERAGVKMVMIQDGPQN---TGADKPLRITGDPYKVQQAKEMVLELIRDQ 87 (94)
T ss_dssp CCCCEEEEEEECHHHHHHHSCSSSSHHHHHHHHHTSEEEECCSCCCS---SCSCEEEEEEECTTTHHHHHHHHHHHHCCC
T ss_pred CCCcEEEEEEEChhhcceEECCCCHHHHHHHHHHCCeEEecCCCCCC---CCCceEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 34678999999999999999999999999999999999998763221 257899999999999999999999999773
No 41
>2dgr_A Ring finger and KH domain-containing protein 1; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.38 E-value=1.4e-13 Score=109.22 Aligned_cols=70 Identities=24% Similarity=0.341 Sum_probs=63.4
Q ss_pred CcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 138 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
...++++|.||.+++|+||||+|++||+|+++|||+|+|++. ..+++|+|+|++++|++|+.+|.+++..
T Consensus 7 ~~~~~~~i~VP~~~vG~IIGkgG~tIk~Iqe~Tga~I~I~~~--------~~~~~v~ItG~~e~v~~A~~~I~~~i~~ 76 (83)
T 2dgr_A 7 GGQTTIQVRVPYRVVGLVVGPKGATIKRIQQRTHTYIVTPGR--------DKEPVFAVTGMPENVDRAREEIEAHITL 76 (83)
T ss_dssp CCSEEEEEECCHHHHHHHHTTTTSSHHHHHHHTTCEEECCCS--------SSCCEEEEEECTTTHHHHHHHHHHHHHS
T ss_pred CCceEEEEEeChHHeeeeECCCchHHHHHHHHhCCeEEecCC--------CCCCeEEEEcCHHHHHHHHHHHHHHHhc
Confidence 456789999999999999999999999999999999999865 2368899999999999999999998764
No 42
>1ec6_A RNA-binding protein NOVA-2; KH domain, alpha-beta fold, RNA-binding motif, protein/RNA structure, RNA binding protein/RNA complex; 2.40A {Homo sapiens} SCOP: d.51.1.1
Probab=99.38 E-value=2.4e-13 Score=109.43 Aligned_cols=73 Identities=29% Similarity=0.488 Sum_probs=65.7
Q ss_pred eEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCC-CCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEH-LPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 141 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~-~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
.+++|+||.+.+|+||||+|++|++|+++|||+|.|.++++ .| .+.++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 3 ~t~~i~IP~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~~~~---g~~~r~v~I~G~~~~v~~A~~~I~~~i~~~ 76 (87)
T 1ec6_A 3 ELVEIAVPENLVGAILGKGGKTLVEYQELTGARIQISKKGEFLP---GTRNRRVTITGSPAATQAAQYLISQRVTYE 76 (87)
T ss_dssp SEEEEEEEHHHHHHHHCGGGHHHHHHHHHHCCEEEECCTTCBST---TSCEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEChHHcCeeECCCcHhHHHHHHHhCCEEEEccCCCCCC---CCCceEEEEEcCHHHHHHHHHHHHHHHhcc
Confidence 47899999999999999999999999999999999987632 33 367899999999999999999999999874
No 43
>1we8_A Tudor and KH domain containing protein; structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.51.1.1
Probab=99.36 E-value=3.6e-13 Score=112.09 Aligned_cols=86 Identities=24% Similarity=0.372 Sum_probs=71.9
Q ss_pred CcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcCC
Q 010373 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHENP 217 (512)
Q Consensus 138 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~~ 217 (512)
....+++|+||.+.+|+||||+|++|++|+++|||+|+|.+... .+ .+.++.|+|+|+.++|.+|+.+|.+++.+++
T Consensus 12 ~ap~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~~tga~I~I~~~~~--~~-~~~~~~V~I~G~~~~v~~A~~~I~~~i~e~~ 88 (104)
T 1we8_A 12 NTPVFEQLSVPQRSVGRIIGRGGETIRSICKASGAKITCDKESE--GT-LLLSRLIKISGTQKEVAAAKHLILEKVSEDE 88 (104)
T ss_dssp SCEEEEEEEEETTTHHHHHTTTSHHHHHHHHHHCCEEEECCSSC--CS-SSSEEEEEEEEEHHHHHHHHHHHHHHHHHHH
T ss_pred CCCEEEEEEEChhheeeeECCCCHHHHHHHHHHCCEEEEecCCC--CC-CCCcceEEEEcCHHHHHHHHHHHHHHHhhCh
Confidence 45678999999999999999999999999999999999987532 11 2468999999999999999999999998876
Q ss_pred Ccccccccc
Q 010373 218 SRSQHLLLS 226 (512)
Q Consensus 218 ~~~~~~~~~ 226 (512)
...+++..+
T Consensus 89 ~~~~~~~~~ 97 (104)
T 1we8_A 89 ELRKRIAHS 97 (104)
T ss_dssp HHHHHHHCC
T ss_pred HHHHHhccC
Confidence 655444333
No 44
>2hh2_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.36 E-value=6.1e-13 Score=111.20 Aligned_cols=73 Identities=23% Similarity=0.401 Sum_probs=64.8
Q ss_pred EEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 142 ~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
+++|+||.+++|+||||+|++|++|+++|||+|+|.++. .| +....++.|+|+|++++|++|+.+|.+++.+.
T Consensus 8 ~~~i~IP~~~vG~IIGkgG~~Ik~I~~~TGa~I~I~~~~-~~-~~~~~~r~V~I~G~~e~v~~A~~~I~~~i~e~ 80 (107)
T 2hh2_A 8 EMTFSIPTHKCGLVIGRGGENVKAINQQTGAFVEISRQL-PP-NGDPNFKLFIIRGSPQQIDHAKQLIEEKIEGP 80 (107)
T ss_dssp CEEEEEEGGGTTTTSTTTTCHHHHHHHHSSSEEEECCCC-CT-TCCTTEEEEEEESCHHHHHHHHHHHHHHSCSC
T ss_pred eEEEEECHHHcCccCCCCcHHHHHHHHHhCCEEEEcCcc-CC-CCCCCceEEEEECCHHHHHHHHHHHHHHHhcc
Confidence 789999999999999999999999999999999998762 22 22356899999999999999999999999874
No 45
>1x4n_A FAR upstream element binding protein 1; KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.51.1.1 PDB: 2opu_A
Probab=99.36 E-value=9.1e-13 Score=107.07 Aligned_cols=72 Identities=25% Similarity=0.369 Sum_probs=63.1
Q ss_pred CCCeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHH
Q 010373 41 SEDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRV 120 (512)
Q Consensus 41 ~~~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i 120 (512)
...++++|+||.+++|.||||+|++|++|+++|+|+|+|.+..++..+|+|+|+|++++ +..|..+|
T Consensus 12 ~~~~~~~i~Ip~~~vG~IIGkgG~~Ik~I~~~tga~I~I~~~~~g~~~r~v~I~G~~e~-------------v~~A~~~I 78 (92)
T 1x4n_A 12 RSVMTEEYKVPDGMVGFIIGRGGEQISRIQQESGCKIQIAPDSGGLPERSCMLTGTPES-------------VQSAKRLL 78 (92)
T ss_dssp CCCEEEEEEEEHHHHHHHHCSSSHHHHHHHHHSCCEEEECSCCTTCSEEEEEEEECHHH-------------HHHHHHHH
T ss_pred CCCEEEEEEEChHHcceeECCCchHHHHHHHHhCCEEEEcCCCCCCCccEEEEEeCHHH-------------HHHHHHHH
Confidence 46789999999999999999999999999999999999998877888999999999766 46666666
Q ss_pred HHHHh
Q 010373 121 HDRIV 125 (512)
Q Consensus 121 ~~~i~ 125 (512)
.+.+.
T Consensus 79 ~~~i~ 83 (92)
T 1x4n_A 79 DQIVE 83 (92)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 66554
No 46
>2hh3_A KH-type splicing regulatory protein; KH-RNA binding domain, RNA binding protein; NMR {Homo sapiens}
Probab=99.35 E-value=8.2e-13 Score=109.87 Aligned_cols=71 Identities=23% Similarity=0.426 Sum_probs=63.7
Q ss_pred eEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 141 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
.+++|+||.+++++||||+|++|++|+++|+|+|+|.++. + .+.+|.|+|+|++++|++|+.+|.+++.+.
T Consensus 11 ~~~~i~Ip~~~iG~IIGkgG~~Ik~I~~~TGakI~I~~~~--~---~~~er~V~I~G~~e~v~~A~~~I~~ii~~~ 81 (106)
T 2hh3_A 11 GGIDVPVPRHSVGVVIGRSGEMIKKIQNDAGVRIQFKQDD--G---TGPEKIAHIMGPPDRCEHAARIINDLLQSL 81 (106)
T ss_dssp -CEEEEEETTTHHHHHTTTTHHHHHHHHHHTCEEEECSSC--S---SSSEEEEEEESSHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEECHHHcCccCCCCcHHHHHHHHHHCcEEEEecCC--C---CCceeEEEEEeCHHHHHHHHHHHHHHHhcc
Confidence 3789999999999999999999999999999999998652 2 256899999999999999999999999873
No 47
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.32 E-value=1.4e-12 Score=100.54 Aligned_cols=67 Identities=21% Similarity=0.287 Sum_probs=59.5
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHH
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRL 419 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l 419 (512)
..+.+|.||.+++|.|||++|++|++|+++|||+|.|++.. +.++.|+|+|++++++.|+.+|.+.+
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 46889999999999999999999999999999999996532 35679999999999999999988753
No 48
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.31 E-value=2.8e-12 Score=104.61 Aligned_cols=74 Identities=15% Similarity=0.196 Sum_probs=64.9
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhchh
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTF 424 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~ 424 (512)
..++.+|.||.+++|+|||++|++|++|+++|||+|+|+++. +.+++.|+|+|++++|+.|+.+|..++++...
T Consensus 15 ~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g------~~~~~~V~I~G~~e~v~~A~~~I~~i~~e~~~ 88 (95)
T 2ctm_A 15 QMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSG------APDPNCVTVTGLPENVEEAIDHILNLEEEYLA 88 (95)
T ss_dssp TCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTT------CSCTTEEEEESCHHHHHHHHHHHHHHHHHHHT
T ss_pred ccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCC------CCCCcEEEEEcCHHHHHHHHHHHHHHHHHHHH
Confidence 468999999999999999999999999999999999996432 13467899999999999999999998887543
No 49
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.30 E-value=2.3e-12 Score=105.06 Aligned_cols=71 Identities=18% Similarity=0.325 Sum_probs=63.3
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
..++.+|.||.+++|.|||++|++|++|+++|||+|+|++.+ +.++.|+|+|++++|+.|+.+|.+++.+.
T Consensus 15 ~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 15 TQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp SCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred CceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 458999999999999999999999999999999999996431 23568999999999999999999998774
No 50
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=6e-12 Score=103.09 Aligned_cols=72 Identities=18% Similarity=0.271 Sum_probs=63.5
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
.++..|.||.++++.|||++|++|++|+++|||+|+|++... | ...++.|+|+|+++++..|+.+|...+.+
T Consensus 16 ~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 16 SFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp TCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 478999999999999999999999999999999999975432 2 23678999999999999999999988876
No 51
>2ctl_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.29 E-value=2.6e-12 Score=105.23 Aligned_cols=74 Identities=20% Similarity=0.234 Sum_probs=65.2
Q ss_pred CcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 138 LTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 138 ~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
...+++.|.||.+.++.||||+|++|++|+++|||+|.|+++.. | ...++.|+|+|+.++|.+|+.+|..++.+
T Consensus 14 ~~~~~~~i~Ip~~~ig~IIGkgG~~Ik~I~~etg~~I~i~~~g~-~---~~~~~~V~I~G~~e~v~~A~~~I~~iv~e 87 (97)
T 2ctl_A 14 LRSFKLSVTVDPKYHPKIIGRKGAVITQIRLEHDVNIQFPDKDD-G---NQPQDQITITGYEKNTEAARDAILRIVGE 87 (97)
T ss_dssp HTTCEEEEECCTTTHHHHSCSSSCHHHHHHHHHTCEEECCCTTT-C---SSCSSEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred ccceeEEEEECHHHhhhcCCCCchhHHHHHHHHCCEEEecCCCC-C---CCCccEEEEEeCHHHHHHHHHHHHHHHHH
Confidence 34579999999999999999999999999999999999987632 2 14678999999999999999999998865
No 52
>2cte_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.26 E-value=4.1e-12 Score=103.60 Aligned_cols=73 Identities=21% Similarity=0.326 Sum_probs=65.0
Q ss_pred CCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 137 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
....++.+|.||.+.+|.|||++|.+|++|+++|||+|+|++.+ ..++.|+|+|++++|.+|+.+|.+++.+.
T Consensus 13 l~~~~t~~i~Ip~~~ig~IIG~gG~~Ik~I~~etg~~I~i~~~~-------~~~~~V~I~G~~e~v~~A~~~I~~i~~~~ 85 (94)
T 2cte_A 13 LQTQASATVAIPKEHHRFVIGKNGEKLQDLELKTATKIQIPRPD-------DPSNQIKITGTKEGIEKARHEVLLISAEQ 85 (94)
T ss_dssp CCSCEEEEEECCTTTHHHHHCSSSCHHHHHHHHTTCCCBCCCTT-------SSCCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred hCCceEEEEEEChHHeeeeECCCChhHHHHHHHHCCEEEeCCCC-------CCCCeEEEEECHHHHHHHHHHHHHHhhcc
Confidence 34568999999999999999999999999999999999997642 23578999999999999999999998774
No 53
>2ctm_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.25 E-value=5.7e-12 Score=102.73 Aligned_cols=73 Identities=21% Similarity=0.259 Sum_probs=65.1
Q ss_pred CCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 137 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
....++..|.||.++++.|||++|++|++|+++|||+|+|+++.. ..++.|+|+|.+++|++|+.+|..++.+
T Consensus 13 l~~~vt~~i~Ip~~~ig~IIG~gG~~Ir~I~e~tg~~I~i~~~g~------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 85 (95)
T 2ctm_A 13 LEQMVSEDVPLDHRVHARIIGARGKAIRKIMDEFKVDIRFPQSGA------PDPNCVTVTGLPENVEEAIDHILNLEEE 85 (95)
T ss_dssp TTTCCCEEEECCTTTHHHHHCSSSCHHHHHHHHHTCEEECCCTTC------SCTTEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcccEEEEEEECHHHccccCCCCcchHHHHHHHHCCeEEecCCCC------CCCcEEEEEcCHHHHHHHHHHHHHHHHH
Confidence 355679999999999999999999999999999999999976521 3467899999999999999999998876
No 54
>1vig_A Vigilin; RNA-binding protein, ribonucleoprotein; NMR {Homo sapiens} SCOP: d.51.1.1 PDB: 1vih_A
Probab=99.25 E-value=3.5e-12 Score=98.28 Aligned_cols=67 Identities=22% Similarity=0.359 Sum_probs=60.0
Q ss_pred ceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHH
Q 010373 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRL 213 (512)
Q Consensus 140 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l 213 (512)
..+..|.||.++++.|||++|++|++|+++|||+|.|++++ ..++.|+|+|+.++|.+|+.+|.+++
T Consensus 4 ~~~~~i~I~~~~ig~iIG~gG~~I~~I~e~tg~~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~i~ 70 (71)
T 1vig_A 4 MDYVEINIDHKFHRHLIGKSGANINRIKDQYKVSVRIPPDS-------EKSNLIRIEGDPQGVQQAKRELLELA 70 (71)
T ss_dssp CEEEEEEECSSHHHHHTCSSCCHHHHHHHHTCCEEECCCCC-------SSSEEEEEEESSHHHHHHHHHHHHTC
T ss_pred eEEEEEEECHHHhhhhcCCCCccHHHHHHHHCCEEEECCCC-------CcccEEEEEcCHHHHHHHHHHHHHHh
Confidence 45789999999999999999999999999999999998762 35679999999999999999998753
No 55
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.21 E-value=1.3e-11 Score=102.45 Aligned_cols=71 Identities=21% Similarity=0.263 Sum_probs=62.7
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhch
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 423 (512)
..+..|.||.+++|.|||++|++|++|+++|||+|.|++.. +..+.|+|+|++++|+.|+.+|.+++++..
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e~e 86 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKELQ 86 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhhHH
Confidence 47899999999999999999999999999999999996532 234589999999999999999999887744
No 56
>2ctk_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.12 E-value=4.2e-11 Score=99.26 Aligned_cols=69 Identities=25% Similarity=0.374 Sum_probs=62.2
Q ss_pred ceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 140 LITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 140 ~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
..+..|.||.+.++.|||++|.+|++|+++|||+|.|+++. ...+.|+|+|+.++|.+|+.+|..++.+
T Consensus 16 p~~~~i~Ip~~~ig~IIG~gG~~Ir~I~eetg~~I~I~~~g-------~~~~~V~I~G~~e~v~~A~~~I~~i~~e 84 (104)
T 2ctk_A 16 PVTIEVEVPFDLHRYVIGQKGSGIRKMMDEFEVNIHVPAPE-------LQSDIIAITGLAANLDRAKAGLLERVKE 84 (104)
T ss_dssp CEEEEEECCHHHHHHHHCSSSHHHHHHHHHTCCEEECCCTT-------TTCCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEEChHHccceeCCCchHHHHHHHHHCCEEEecCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 46889999999999999999999999999999999998652 2345899999999999999999998876
No 57
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.09 E-value=1e-10 Score=95.11 Aligned_cols=70 Identities=17% Similarity=0.223 Sum_probs=62.5
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHh-CCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhh
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSAT-RASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRA 421 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~T-Ga~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~ 421 (512)
..++..|.||.++++.|||++|.+|++|+++| ||+|.|+.. ++..+.|+|.|+.++|+.|+.+|.+++.+
T Consensus 15 ~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~-------g~~~~~V~I~G~~~~v~~A~~~I~~iv~e 85 (95)
T 2ctj_A 15 NIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVE-------GSGSDTVVIRGPSSDVEKAKKQLLHLAEE 85 (95)
T ss_dssp SSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCT-------TTTCCEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred hcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCC-------CCCcceEEEEcCHHHHHHHHHHHHHHHhh
Confidence 46789999999999999999999999999999 999999643 23455899999999999999999998876
No 58
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.06 E-value=3.2e-10 Score=93.48 Aligned_cols=67 Identities=16% Similarity=0.278 Sum_probs=59.7
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHH-hCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSA-TRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~-TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
.++.+|.||..+|++|||++|++|++|+++ ++++|.+++ +++.|+|+|+++.|..|..+|...+++.
T Consensus 26 ~~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~----------~~~~ItI~G~~~~V~~a~~~I~~~v~el 93 (102)
T 2ctf_A 26 FTVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTE----------GEDKITLEGPTEDVSVAQEQIEGMVKDL 93 (102)
T ss_dssp CEEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECS----------SSCEEEEEECHHHHHHHHHHHHHHHHHH
T ss_pred eEEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCC----------CCCEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 378999999999999999999999999997 589999853 2348999999999999999999988764
No 59
>2ctj_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.04 E-value=1.5e-10 Score=94.19 Aligned_cols=73 Identities=23% Similarity=0.301 Sum_probs=65.0
Q ss_pred CCCcceEEEEEeeCCceeEEecCCChhHHHHHhhc-CceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHh
Q 010373 136 GELTLITVRMLVPADQIGCVIGKGGQVIQNIRTET-RAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLH 214 (512)
Q Consensus 136 ~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~t-ga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~ 214 (512)
+..+.++..|.||.++++.|||++|.+|++|+++| ||+|.|+++. +..+.|+|.|+.++|++|+.+|.+++.
T Consensus 12 e~~~~vt~~i~Ip~~~i~~iIG~gGk~Ir~I~eetggv~I~i~~~g-------~~~~~V~I~G~~~~v~~A~~~I~~iv~ 84 (95)
T 2ctj_A 12 DLANIAEVEVSIPAKLHNSLIGTKGRLIRSIMEECGGVHIHFPVEG-------SGSDTVVIRGPSSDVEKAKKQLLHLAE 84 (95)
T ss_dssp CCCSSCCEEEECCHHHHHHHHCSSSHHHHHHHHHHTSCEEECCCTT-------TTCCEEEEESCHHHHHHHHHHHHHHHH
T ss_pred HHhhcEEEEEEECHHHHhhhCCCCchhHHHHHHHcCCCEEEeCCCC-------CCcceEEEEcCHHHHHHHHHHHHHHHh
Confidence 34567789999999999999999999999999999 9999997652 345679999999999999999999987
Q ss_pred c
Q 010373 215 E 215 (512)
Q Consensus 215 ~ 215 (512)
+
T Consensus 85 e 85 (95)
T 2ctj_A 85 E 85 (95)
T ss_dssp H
T ss_pred h
Confidence 6
No 60
>2ctf_A Vigilin; K homology type I domain, RNA-binding, cell sterol metabolism, beta-alpha-alpha-beta-BETA-alpha structure, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=99.02 E-value=3.5e-10 Score=93.25 Aligned_cols=65 Identities=20% Similarity=0.309 Sum_probs=59.5
Q ss_pred eEEEEEeeCCceeEEecCCChhHHHHHhh-cCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 141 ITVRMLVPADQIGCVIGKGGQVIQNIRTE-TRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 141 ~~~~llVP~~~vg~IIGk~G~~Ik~I~~~-tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
++.+|.||..+++.|||++|++|++|+++ ++++|.|++. ++.|+|+|+++.|.+|..+|..++.+
T Consensus 27 ~t~~i~vp~~~h~~IIG~~G~~Ik~i~~~~~~v~I~fp~~----------~~~ItI~G~~~~V~~a~~~I~~~v~e 92 (102)
T 2ctf_A 27 TVSSVAAPSWLHRFIIGKKGQNLAKITQQMPKVHIEFTEG----------EDKITLEGPTEDVSVAQEQIEGMVKD 92 (102)
T ss_dssp EEEEEECCSTTHHHHHTTTTCHHHHHHHHCSSSEEEECSS----------SCEEEEEECHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEeCHHHHhhhcCCCCccHHHHHHHcCCcEEEeCCC----------CCEEEEECCHHHHHHHHHHHHHHHHH
Confidence 78999999999999999999999999997 5999998652 46899999999999999999998876
No 61
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.83 E-value=2.3e-09 Score=85.55 Aligned_cols=65 Identities=22% Similarity=0.287 Sum_probs=56.6
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCe-EEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRAS-IRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRL 419 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~-I~i~~~~~~p~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l 419 (512)
..+...|.||.+++|.|||++|++|++|+++|||+ |.|.. ++..|+|.| +.+++++|+.+|...-
T Consensus 13 ~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~e----------ddG~V~I~g~~~ea~~~A~~~I~~ie 79 (91)
T 2cpq_A 13 AAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDE----------DTGTFRIYGESADAVKKARGFLEFVE 79 (91)
T ss_dssp CSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEET----------TTTEEEEEESSHHHHHHHHHHHSCCC
T ss_pred CceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEc----------CCCEEEEEECCHHHHHHHHHHHHhhh
Confidence 45788999999999999999999999999999998 99952 346899999 8999999988875443
No 62
>2cpq_A FragIle X mental retardation syndrome related protein 1, isoform B'; KH domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.73 E-value=8.2e-09 Score=82.32 Aligned_cols=65 Identities=23% Similarity=0.288 Sum_probs=57.2
Q ss_pred CCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCce-EEEeecCCCCcccCCCCceEEEec-CHHHHHHHHHHHHH
Q 010373 137 ELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQ-IRILKDEHLPLCALSFDELLQVAG-EPAVVRKALVQIAS 211 (512)
Q Consensus 137 ~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~-I~i~~~~~~p~~~~~~dr~v~I~G-~~~~V~~A~~~I~~ 211 (512)
....+...|.||.+.++.|||++|.+|++|+++|||+ |.|..+ +..|+|.| +.+++++|+.+|..
T Consensus 11 ~~~~~i~~i~I~~dkIg~vIG~gGk~Ik~I~e~tGv~~IdI~ed----------dG~V~I~g~~~ea~~~A~~~I~~ 77 (91)
T 2cpq_A 11 LAAAFHEEFVVREDLMGLAIGTHGSNIQQARKVPGVTAIELDED----------TGTFRIYGESADAVKKARGFLEF 77 (91)
T ss_dssp SSCSEEEEEECCHHHHHHHHTTTTHHHHHHHTSTTEEEEEEETT----------TTEEEEEESSHHHHHHHHHHHSC
T ss_pred ccCceEEEEEEChHHhhhhcCCCcHHHHHHHHHhCCeEEEEEcC----------CCEEEEEECCHHHHHHHHHHHHh
Confidence 4456788999999999999999999999999999998 999643 46899999 89999999887754
No 63
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.61 E-value=1.2e-07 Score=81.51 Aligned_cols=76 Identities=18% Similarity=0.332 Sum_probs=61.8
Q ss_pred eeEEEEEecCC------ceeeeecCCchhHHHHHHHhCCeEEEecCCCC-----------CCCCCCCceEEEEEc-CHHH
Q 010373 346 VITTRILVPSA------QIGCLIGRGGAIISEMRSATRASIRILTNENV-----------PKVAYEDEEMVQITG-SLDV 407 (512)
Q Consensus 346 ~~t~~l~VP~~------~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~-----------p~~~~~~~r~V~I~G-~~~~ 407 (512)
.++.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+... +.....++-.|.|++ +.+.
T Consensus 6 k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e~ 85 (131)
T 1k1g_A 6 RVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTMEN 85 (131)
T ss_dssp CEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHHH
T ss_pred eEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHHH
Confidence 47889999987 88999999999999999999999999764211 111123466788999 7899
Q ss_pred HHHHHHHHHHHHhh
Q 010373 408 ASSALSQVTLRLRA 421 (512)
Q Consensus 408 v~~A~~~I~~~l~~ 421 (512)
++.|+.+|..+|..
T Consensus 86 ~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 86 VKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHhc
Confidence 99999999999966
No 64
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.8e-07 Score=78.77 Aligned_cols=76 Identities=11% Similarity=0.074 Sum_probs=58.1
Q ss_pred eeEEEEEecCC-------ceeeeecCCchhHHHHHHHhCCeEEEecCCC-----CCCCCCCCceEEEEEc-CHHHHHHHH
Q 010373 346 VITTRILVPSA-------QIGCLIGRGGAIISEMRSATRASIRILTNEN-----VPKVAYEDEEMVQITG-SLDVASSAL 412 (512)
Q Consensus 346 ~~t~~l~VP~~-------~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~-----~p~~~~~~~r~V~I~G-~~~~v~~A~ 412 (512)
..+.+|.||.+ ++|.|||++|.+||+|+++|||+|.|..+.. ....+..++-.|.|.+ +++++++|+
T Consensus 11 ~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A~ 90 (119)
T 2yqr_A 11 YVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAAK 90 (119)
T ss_dssp CEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHHH
T ss_pred EEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHHH
Confidence 46778888754 7899999999999999999999999964321 0011122344677776 799999999
Q ss_pred HHHHHHHhh
Q 010373 413 SQVTLRLRA 421 (512)
Q Consensus 413 ~~I~~~l~~ 421 (512)
.+|.++|..
T Consensus 91 ~~Ie~Ll~~ 99 (119)
T 2yqr_A 91 KLCENLLQT 99 (119)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHhhc
Confidence 999998875
No 65
>1k1g_A SF1-BO isoform; splicing, branch point sequence, protein/RNA recognition, complex E, KH domain, QUA2 homology; NMR {Homo sapiens} SCOP: d.51.1.1
Probab=98.50 E-value=2.6e-07 Score=79.39 Aligned_cols=77 Identities=26% Similarity=0.322 Sum_probs=61.3
Q ss_pred cceEEEEEeeCC------ceeEEecCCChhHHHHHhhcCceEEEeecCCCCc-----------ccCCCCceEEEec-CHH
Q 010373 139 TLITVRMLVPAD------QIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPL-----------CALSFDELLQVAG-EPA 200 (512)
Q Consensus 139 ~~~~~~llVP~~------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~-----------~~~~~dr~v~I~G-~~~ 200 (512)
..++.+|.||.+ .+|.|||++|.+||+|+++|||+|.|........ .....+--|.|++ +.+
T Consensus 5 ~k~~~kv~IP~~~~P~~n~iG~IIGP~G~tiK~Iq~eTG~kI~IrgkgS~~~~~~~~~~~~~~~~~~e~lhV~I~a~~~e 84 (131)
T 1k1g_A 5 TRVSDKVMIPQDEYPEINFVGLLIGPRGNTLKNIEKECNAKIMIRGKGSVKEGKVGRKDGQMLPGEDEPLHALVTANTME 84 (131)
T ss_dssp CCEEEEEECCTTTCCSHHHHHHHHCSSSHHHHHHHHHSCCEEEEEESTTSSSSSSSSCCCCCSCCSSCCEEEEEEESSHH
T ss_pred ceEEEEEEECCccccCcceeeeEECCCcHHHHHHHHHHCCeEEecCCcccccccccccccccccccCCCeEEEEEECCHH
Confidence 457899999988 7889999999999999999999999987421110 0012355688888 588
Q ss_pred HHHHHHHHHHHHHhc
Q 010373 201 VVRKALVQIASRLHE 215 (512)
Q Consensus 201 ~V~~A~~~I~~~l~~ 215 (512)
.+.+|+.+|..+|.+
T Consensus 85 ~~~~A~~~I~~ll~~ 99 (131)
T 1k1g_A 85 NVKKAVEQIRNILKQ 99 (131)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHhc
Confidence 899999999999976
No 66
>2yqr_A KIAA0907 protein; structure genomics, KH domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.31 E-value=1.1e-06 Score=74.02 Aligned_cols=77 Identities=17% Similarity=0.129 Sum_probs=57.8
Q ss_pred cceEEEEEeeCC-------ceeEEecCCChhHHHHHhhcCceEEEeecCCC---C--cccCCCCceEEEec-CHHHHHHH
Q 010373 139 TLITVRMLVPAD-------QIGCVIGKGGQVIQNIRTETRAQIRILKDEHL---P--LCALSFDELLQVAG-EPAVVRKA 205 (512)
Q Consensus 139 ~~~~~~llVP~~-------~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~---p--~~~~~~dr~v~I~G-~~~~V~~A 205 (512)
..++.+|.||-+ .++.|||++|.+||+|+++|||+|.|..+... + ......+-.|.|++ +.+++++|
T Consensus 10 ~~~~~ki~ip~~~~~p~fn~ig~IIGpgG~tiK~I~~eTG~kI~I~G~gS~~~e~~~~~e~~e~l~V~I~a~~~e~i~~A 89 (119)
T 2yqr_A 10 HYVQDKLFVGLEHAVPTFNVKEKVEGPGCSYLQHIQIETGAKVFLRGKGSGCIEPASGREAFEPMYIYISHPKPEGLAAA 89 (119)
T ss_dssp SCEEEEEECCCTTSCTTTCHHHHHSCGGGHHHHHHHHHHCCEEEEESBTTTCCCTTTSSCCSSBCEEEEEESSHHHHHHH
T ss_pred eEEEEEEEcCCccCCCCCCeeeeEECCCChHHHHHHHHHCCEEEEecCCccccccccccccCCCcEEEEEeCCHHHHHHH
Confidence 456888998865 68999999999999999999999999744210 0 00011233566765 69999999
Q ss_pred HHHHHHHHhc
Q 010373 206 LVQIASRLHE 215 (512)
Q Consensus 206 ~~~I~~~l~~ 215 (512)
+.+|.+++.+
T Consensus 90 ~~~Ie~Ll~~ 99 (119)
T 2yqr_A 90 KKLCENLLQT 99 (119)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhhc
Confidence 9999999876
No 67
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.14 E-value=1.7e-06 Score=74.62 Aligned_cols=76 Identities=18% Similarity=0.352 Sum_probs=56.6
Q ss_pred eEEEEEeeCCc------eeEEecCCChhHHHHHhhcCceEEEeecCCC------------Cccc-CCCCceEEEecC-HH
Q 010373 141 ITVRMLVPADQ------IGCVIGKGGQVIQNIRTETRAQIRILKDEHL------------PLCA-LSFDELLQVAGE-PA 200 (512)
Q Consensus 141 ~~~~llVP~~~------vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~------------p~~~-~~~dr~v~I~G~-~~ 200 (512)
++.+|.||.+. +|.|||++|.++|+|+++|||+|.|..+... |... ...+--|.|+++ .+
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 57789999655 8999999999999999999999999875321 1100 112235778884 32
Q ss_pred -----HHHHHHHHHHHHHhcC
Q 010373 201 -----VVRKALVQIASRLHEN 216 (512)
Q Consensus 201 -----~V~~A~~~I~~~l~~~ 216 (512)
.+.+|+.+|..+|...
T Consensus 82 ~~~~~~l~~A~~~I~~lL~p~ 102 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLVPA 102 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSSCC
T ss_pred hhHHHHHHHHHHHHHHHCCCC
Confidence 7899999999988653
No 68
>2bl5_A MGC83862 protein, quaking protein; STAR proteins, GSG proteins, RNA binding; NMR {Xenopus laevis} SCOP: d.51.1.1
Probab=98.04 E-value=4.6e-06 Score=72.00 Aligned_cols=74 Identities=19% Similarity=0.304 Sum_probs=54.5
Q ss_pred eEEEEEecCC------ceeeeecCCchhHHHHHHHhCCeEEEecCCCC------------CC-CCCCCceEEEEEc-CHH
Q 010373 347 ITTRILVPSA------QIGCLIGRGGAIISEMRSATRASIRILTNENV------------PK-VAYEDEEMVQITG-SLD 406 (512)
Q Consensus 347 ~t~~l~VP~~------~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~------------p~-~~~~~~r~V~I~G-~~~ 406 (512)
++.+|.||.+ ++|.|||++|.++|+|+++|||+|.|-.+... |. ...+++--|.|++ +++
T Consensus 2 ~~~Ki~IP~~~~P~~NfiG~IiGPrG~t~K~ie~eTg~kI~IrGkGS~kd~~~e~~~~g~~~~~~~~epLHV~Isa~~~~ 81 (140)
T 2bl5_A 2 LQEKLYVPVKEYPDFNFVGRILGPRGLTAKQLEAETGCKIMVRGKGSMRDKKKEEQNRGKPNWEHLNEDLHVLITVEDAQ 81 (140)
T ss_dssp EEEEEECCTTTCSSSCHHHHHTTTTHHHHHHHHHHHSEEEEEESTTSSCCHHHHHTSTTSHHHHTTTSCCEEEEEECSCC
T ss_pred ceeEEEcCcccCCCCCeeeEEECCCcchHHHHHHHHCCeEEEecCCCcccccccccccCCCCccccCCCcEEEEEecCch
Confidence 4677888854 49999999999999999999999999764311 00 0012333688888 343
Q ss_pred -----HHHHHHHHHHHHHh
Q 010373 407 -----VASSALSQVTLRLR 420 (512)
Q Consensus 407 -----~v~~A~~~I~~~l~ 420 (512)
.++.|+.+|..+|.
T Consensus 82 ~~~~~~l~~A~~~I~~lL~ 100 (140)
T 2bl5_A 82 NRAELKLKRAVEEVKKLLV 100 (140)
T ss_dssp HHHHHHHHHHHHHHHHHSS
T ss_pred hhHHHHHHHHHHHHHHHCC
Confidence 78899999988875
No 69
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.97 E-value=4.4e-06 Score=90.01 Aligned_cols=95 Identities=19% Similarity=0.185 Sum_probs=71.3
Q ss_pred ccCcHHHHHHHHHHHHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccC
Q 010373 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (512)
Q Consensus 108 ~~~~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (512)
+.+..|.++...|++.+.+.......+-.........|.||.+.++.|||++|.+||.|+++|||+|.|.++
T Consensus 534 ~aL~~A~~g~~~I~~~m~~al~~~~~~~~~~ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~d~-------- 605 (630)
T 3u1k_A 534 EAIQQASVAKKEILQIMNKTISKPRASRKENGPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQVDE-------- 605 (630)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSCCSSCCTTCCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEECSS--------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhhcccCCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEcCC--------
Confidence 346667888888887765443322222223345578899999999999999999999999999999999643
Q ss_pred CCCceEEEecC-HHHHHHHHHHHHHHH
Q 010373 188 SFDELLQVAGE-PAVVRKALVQIASRL 213 (512)
Q Consensus 188 ~~dr~v~I~G~-~~~V~~A~~~I~~~l 213 (512)
-.|.|.+. .+++.+|+.+|..++
T Consensus 606 ---G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 606 ---ETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp ---SEEEEEESSHHHHHHHHHHTTC--
T ss_pred ---cEEEEEeCCHHHHHHHHHHHHHHh
Confidence 46999886 678999998887654
No 70
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.75 E-value=6.2e-05 Score=63.54 Aligned_cols=69 Identities=16% Similarity=0.137 Sum_probs=59.5
Q ss_pred EEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 348 t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
...|.|...+++.|+|++|+.|++|+..|++.|+|..-+ .+....|+|.|++..-..|+.+|.....-+
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~------s~g~tEVtIfG~~~~Q~rak~MI~sLA~~h 125 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWG------PERRAEIWIFGPPPFRRDVDRMLTDLAHYC 125 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCC------TTSCEEEEEESCHHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccC------CCCcEEEEEECCHHHHHHHHHHHHHHHHHH
Confidence 467899999999999999999999999999999997532 235678999999999999999998776543
No 71
>3u1k_A Polyribonucleotide nucleotidyltransferase 1, MITO; RNAse PH, KH domain, exoribonuclease; HET: CIT; 2.13A {Homo sapiens}
Probab=97.59 E-value=3.6e-05 Score=82.93 Aligned_cols=64 Identities=19% Similarity=0.267 Sum_probs=54.3
Q ss_pred ceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcC-HHHHHHHHHHHHHHH
Q 010373 345 PVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGS-LDVASSALSQVTLRL 419 (512)
Q Consensus 345 ~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~-~~~v~~A~~~I~~~l 419 (512)
......|.||.+.+|.|||+||++||+|+++|||+|.|. ++..|.|.++ .+++++|+.+|.+.+
T Consensus 565 ap~~~~~~I~~~kI~~vIG~gG~~Ik~I~e~tg~~I~I~-----------d~G~V~I~~~~~~~~~~A~~~I~~i~ 629 (630)
T 3u1k_A 565 GPVVETVQVPLSKRAKFVGPGGYNLKKLQAETGVTISQV-----------DEETFSVFAPTPSAMHEARDFITEIC 629 (630)
T ss_dssp CCEEEEEECCHHHHHHHHCGGGHHHHHHHHHHCCEEEEC-----------SSSEEEEEESSHHHHHHHHHHTTC--
T ss_pred CCeEEEEEeChhHhheeECCCChhHHHHHHHHCCEEEEc-----------CCcEEEEEeCCHHHHHHHHHHHHHHh
Confidence 456788999999999999999999999999999999994 2358999995 688999998886554
No 72
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.56 E-value=8e-06 Score=70.96 Aligned_cols=109 Identities=23% Similarity=0.304 Sum_probs=74.9
Q ss_pred CCCCeEEEEEecCCceeeeccCCchHHHHHHHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHH
Q 010373 40 GSEDTVYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFR 119 (512)
Q Consensus 40 ~~~~~~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~ 119 (512)
|++.-.+.++|+...+|..||++|++|+.|+++.|-+|+|-+-..+ + .+ .
T Consensus 32 d~~~dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d-----------~----------------~~---f 81 (144)
T 2cxc_A 32 DEENNRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD-----------L----------------ER---I 81 (144)
T ss_dssp EGGGTEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS-----------H----------------HH---H
T ss_pred eCCCCEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC-----------H----------------HH---H
Confidence 3444678899999999999999999999999999999988543111 0 00 0
Q ss_pred HHHHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEee
Q 010373 120 VHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILK 178 (512)
Q Consensus 120 i~~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~ 178 (512)
+...+.......-.-...+....+.+.||..+.+..|||+|++++-..+-||.+|.|..
T Consensus 82 I~naLsPA~V~~V~i~~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~~ 140 (144)
T 2cxc_A 82 VKNLFPGVKIESINVRERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVEK 140 (144)
T ss_dssp HHHHSTTSCEEEEEEEEETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEEE
T ss_pred HHHhcCCceEEEEEEeecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCceE
Confidence 11111111000000000023457889999999999999999999999999999887753
No 73
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=97.46 E-value=5e-05 Score=82.76 Aligned_cols=97 Identities=24% Similarity=0.354 Sum_probs=28.8
Q ss_pred ccCcHHHHHHHHHHHHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccC
Q 010373 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (512)
Q Consensus 108 ~~~~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (512)
+.+..|.++...|++.+.........+-.........|.||.+.++.|||++|.+||+|+++|||+|.|..+
T Consensus 537 ~aL~~A~~g~~~I~~~m~~al~~~r~~~~~~ap~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~dd-------- 608 (726)
T 4aid_A 537 QALAQAKEGRAHILGEMNKAMDAPRADVGDFAPKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDINDD-------- 608 (726)
T ss_dssp HHHHHHHHHHHHHHHHHHTTCSSCCSSCCSSCCC----------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhhhhhcccCCeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEECC--------
Confidence 446678888888887765433222222122234467899999999999999999999999999999998643
Q ss_pred CCCceEEEecC-HHHHHHHHHHHHHHHhc
Q 010373 188 SFDELLQVAGE-PAVVRKALVQIASRLHE 215 (512)
Q Consensus 188 ~~dr~v~I~G~-~~~V~~A~~~I~~~l~~ 215 (512)
..|.|.+. .+++++|+..|..++.+
T Consensus 609 ---G~v~I~~~~~~~~~~A~~~i~~i~~~ 634 (726)
T 4aid_A 609 ---GVVKVSASDGAKIKAAIDWIKSITDE 634 (726)
T ss_dssp --------CCSCHHHHHHHHHC-------
T ss_pred ---ceEEEEeCCHHHHHHHHHHHHHHhhh
Confidence 34677665 88899999999887754
No 74
>2cxc_A NUSA; transcription termination, RNA binding protein, archaeal NUS domain, structural genomics, NPPSFA; 2.00A {Aeropyrum pernix} PDB: 2cy1_A
Probab=97.34 E-value=5.3e-05 Score=65.76 Aligned_cols=104 Identities=22% Similarity=0.322 Sum_probs=74.1
Q ss_pred ceEEEecCCCCCcccccCCCccccchhhhcCCeEEecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCC
Q 010373 262 FSLRLVCPAGNIGGVIGKGGGIIKQIRQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERE 341 (512)
Q Consensus 262 ~~~~v~vP~~~vg~IIGk~G~~Ik~I~~~tga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 341 (512)
-.+.+.++...+|..||++|++|+.|.++.|-+|.+-.-+.+ +..-+..+ +.|.-...+.-.
T Consensus 36 dr~i~vVk~g~vGa~IG~~G~ri~~i~~elgekIdIV~~s~d----------------~~~fI~na--LsPA~V~~V~i~ 97 (144)
T 2cxc_A 36 NRLIFLVSEGEAGRAIGRGGRLIKLLREALGKNIEVVEYSSD----------------LERIVKNL--FPGVKIESINVR 97 (144)
T ss_dssp TEEEEEECTTCHHHHHCGGGHHHHHHHHHHSSEEEEEECCSS----------------HHHHHHHH--STTSCEEEEEEE
T ss_pred CEEEEEEeCCCccccCccCchHHHHHHHHhCCeeEEEEcCCC----------------HHHHHHHh--cCCceEEEEEEe
Confidence 467889999999999999999999999999999887654321 11112222 222111111100
Q ss_pred CCCceeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEe
Q 010373 342 SGDPVITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRIL 383 (512)
Q Consensus 342 ~~~~~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~ 383 (512)
..+......+.||.+..+..|||+|.+++-..+-||.+|.|.
T Consensus 98 ~~~~~~~~~V~V~~~q~slAIGk~G~NvrLa~~Ltg~~idI~ 139 (144)
T 2cxc_A 98 ERNGVKQVVIKVSEDDKGAAIGKGGKNVKRARLVLSKLFGVE 139 (144)
T ss_dssp EETTEEEEEEEECTTTHHHHHCGGGHHHHHHHHHHHHHHCEE
T ss_pred ecCCcEEEEEEEChHHhhhccCCCCHHHHHHHHHhCCeeCce
Confidence 002346678899999999999999999999999999988874
No 75
>3v69_A Protein filia; RNA-binding, embryogenesis, KH domain, RNA binding, P binding; 2.20A {Mus musculus}
Probab=97.16 E-value=0.00063 Score=57.44 Aligned_cols=68 Identities=16% Similarity=0.187 Sum_probs=59.5
Q ss_pred EEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhc
Q 010373 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHE 215 (512)
Q Consensus 142 ~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~ 215 (512)
.+.+.|.+..++.|+|++|+.|+.|+..|+|.|+|..-+. +..--|+|.|.+..-.+|+.+|..+...
T Consensus 57 PlVF~vE~~lve~IFGp~Gs~Ip~IE~~SqTLIqV~~~~s------~g~tEVtIfG~~~~Q~rak~MI~sLA~~ 124 (140)
T 3v69_A 57 PKRLYVEPRLLEIMFGKDGEHIPHLESMLHTLIHVNVWGP------ERRAEIWIFGPPPFRRDVDRMLTDLAHY 124 (140)
T ss_dssp CEEEEECGGGHHHHHCGGGTTHHHHHHHHTSEEEEECCCT------TSCEEEEEESCHHHHHHHHHHHHHHHHH
T ss_pred CeEEEEehhhhhcccCCCcCccchHHhhcceeEEEeccCC------CCcEEEEEECCHHHHHHHHHHHHHHHHH
Confidence 5679999999999999999999999999999999986521 3355699999999999999999887765
No 76
>4aid_A Polyribonucleotide nucleotidyltransferase; transferase-peptide complex; 2.60A {Caulobacter vibrioides} PDB: 4aim_A 4am3_A
Probab=96.74 E-value=0.0003 Score=76.70 Aligned_cols=66 Identities=23% Similarity=0.343 Sum_probs=12.1
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHhhc
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~~~ 422 (512)
.....+.||.+.++.|||+||.+||+|+++||++|.|. ++..|.|.+ +.++++.|+.+|...+.+.
T Consensus 569 p~~~~~~i~~~ki~~vig~gg~~i~~i~~~tg~~idi~-----------ddG~v~I~~~~~~~~~~A~~~i~~i~~~~ 635 (726)
T 4aid_A 569 PKIETINIPTDKIREVIGSGGKVIREIVATTGAKVDIN-----------DDGVVKVSASDGAKIKAAIDWIKSITDEA 635 (726)
T ss_dssp CC------------------------------------------------------CCSCHHHHHHHHHC--------
T ss_pred CeEEEEeCCHHHHHhhcCCCchhHHHHHHHHCCceeEE-----------CCceEEEEeCCHHHHHHHHHHHHHHhhhh
Confidence 45678999999999999999999999999999999984 234677777 5889999999888877653
No 77
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.84 E-value=0.0068 Score=57.12 Aligned_cols=97 Identities=23% Similarity=0.216 Sum_probs=64.5
Q ss_pred CceeeeccCCchHHHHH-HHhhCCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHHHHHhhhcccC
Q 010373 53 RKIGSIIGKGGEIVKQL-RSETKSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLA 131 (512)
Q Consensus 53 ~~~g~IIGk~G~~I~~I-~~~tga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~~~i~~~~~~~ 131 (512)
+-+|..||++|++|+.| ++-.|=+|+|-.-..+ + . ..|...+.......
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d-----------p----------------~---~fi~nalsPA~V~~ 175 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD-----------P----------------A---RFVANALSPAKVVS 175 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS-----------H----------------H---HHHHHHTTTSCCSE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC-----------H----------------H---HHHHhccCCcceEE
Confidence 46899999999999999 5666888887432111 0 0 01111111111100
Q ss_pred CcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecC
Q 010373 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180 (512)
Q Consensus 132 ~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~ 180 (512)
-.- .....-.+.+.||..+.+..|||+|++++--..-||.+|.|....
T Consensus 176 V~i-~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 223 (251)
T 2asb_A 176 VSV-IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 223 (251)
T ss_dssp EEE-EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESS
T ss_pred EEE-EcCCCcEEEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHH
Confidence 000 000123788999999999999999999999999999999998763
No 78
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.72 E-value=0.0038 Score=62.20 Aligned_cols=97 Identities=25% Similarity=0.226 Sum_probs=66.0
Q ss_pred CceeeeccCCchHHHHHHHhh-CCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHHHHHhhhcccC
Q 010373 53 RKIGSIIGKGGEIVKQLRSET-KSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLA 131 (512)
Q Consensus 53 ~~~g~IIGk~G~~I~~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~~~i~~~~~~~ 131 (512)
+-+|..||++|++|+.|.++. |=+|+|-+-.. + ....|...+.......
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~--------------d----------------p~~fi~nalsPA~V~~ 298 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDD--------------D----------------PARFVANALSPAKVVS 298 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCS--------------S----------------HHHHHHHHTTTSCCSE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCC--------------C----------------HHHHHHHhcCCcceeE
Confidence 468999999999999999998 88888743211 1 0001111111111100
Q ss_pred CcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecC
Q 010373 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDE 180 (512)
Q Consensus 132 ~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~ 180 (512)
-.. -......+.+.||..+.+..|||+|++++-...-||.+|.|....
T Consensus 299 V~~-~~~~~~~a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 299 VSV-IDQTARAARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEE-EETTTTEEEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEE-EcCCCcEEEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 000 001134788999999999999999999999999999999998763
No 79
>2asb_A Transcription elongation protein NUSA; protein-RNA complex, transcription/RNA complex; 1.50A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 PDB: 2atw_A
Probab=95.70 E-value=0.0062 Score=57.43 Aligned_cols=97 Identities=22% Similarity=0.275 Sum_probs=65.8
Q ss_pred CCCcccccCCCccccch-hhhcCCeEEecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCccccccc-CCCCCceeE
Q 010373 271 GNIGGVIGKGGGIIKQI-RQESGASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTE-RESGDPVIT 348 (512)
Q Consensus 271 ~~vg~IIGk~G~~Ik~I-~~~tga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~t 348 (512)
+-+|..||++|++|+.| ++-.|-+|.+-.-+.+ +.....-.+.+.-...+. .+. ....
T Consensus 126 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d------------------p~~fi~nalsPA~V~~V~i~~~--~~~~ 185 (251)
T 2asb_A 126 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD------------------PARFVANALSPAKVVSVSVIDQ--TARA 185 (251)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS------------------HHHHHHHHTTTSCCSEEEEEET--TTTE
T ss_pred CHHHHHhCCCchHHHHHHHHhCCCeEEEEEecCC------------------HHHHHHhccCCcceEEEEEEcC--CCcE
Confidence 34799999999999999 6666777777553311 122111222221111111 011 1246
Q ss_pred EEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCC
Q 010373 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNEN 387 (512)
Q Consensus 349 ~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~ 387 (512)
..+.||.++.+.-|||+|.+|+--.+.||.+|.|....+
T Consensus 186 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~~ 224 (251)
T 2asb_A 186 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDAP 224 (251)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHSCEEEEEESSC
T ss_pred EEEEEChHHhhhhhcCCcCcHHHHHHHHCCEecceEHHH
Confidence 789999999999999999999999999999999976543
No 80
>1k0r_A NUSA; two component arrangement, S1 domain, two K-homology domains., structural genomics, PSI, protein structure initiative; 1.70A {Mycobacterium tuberculosis} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1
Probab=95.37 E-value=0.0083 Score=59.77 Aligned_cols=96 Identities=22% Similarity=0.271 Sum_probs=66.5
Q ss_pred CCCcccccCCCccccchhhhc-CCeEEecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccc-cCCCCCceeE
Q 010373 271 GNIGGVIGKGGGIIKQIRQES-GASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKT-ERESGDPVIT 348 (512)
Q Consensus 271 ~~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~t 348 (512)
+-+|..||++|.+|+.|.++- |-+|.+-.-+.+ +.....-.+.|.-...+ ..+. ....
T Consensus 249 DpvGacIG~~G~rI~~i~~eL~gekIDIi~~s~d------------------p~~fi~nalsPA~V~~V~~~~~--~~~~ 308 (366)
T 1k0r_A 249 NAKGACIGPMGQRVRNVMSELSGEKIDIIDYDDD------------------PARFVANALSPAKVVSVSVIDQ--TARA 308 (366)
T ss_dssp CHHHHHHCGGGHHHHHHHHHTTTCEEEEEECCSS------------------HHHHHHHHTTTSCCSEEEEEET--TTTE
T ss_pred CCcccccCCcchHHHHHHHHhCCCeEEEEEcCCC------------------HHHHHHHhcCCcceeEEEEEcC--CCcE
Confidence 347999999999999999998 777777543311 12222222222111111 0001 1346
Q ss_pred EEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCC
Q 010373 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNE 386 (512)
Q Consensus 349 ~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~ 386 (512)
..+.||.+..+..|||+|.+++-..+.||.+|.|....
T Consensus 309 a~V~V~~~qlslAIGk~GqNvrLA~~Ltg~~idI~~~~ 346 (366)
T 1k0r_A 309 ARVVVPDFQLSLAIGKEGQNARLAARLTGWRIDIRGDA 346 (366)
T ss_dssp EEEEECGGGHHHHHCGGGHHHHHHHHHHCCEEEEEESS
T ss_pred EEEEEChHHhhhccCCCcHHHHHHHHHHCCeeeeeEHH
Confidence 88999999999999999999999999999999997654
No 81
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=95.24 E-value=0.0047 Score=67.56 Aligned_cols=96 Identities=22% Similarity=0.287 Sum_probs=13.9
Q ss_pred ccCcHHHHHHHHHHHHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccC
Q 010373 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (512)
Q Consensus 108 ~~~~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (512)
+.+..|.++...|++.+.........+-.........+.||.+.++.|||++|.+|+.|.++||+.|.|..+
T Consensus 527 ~~l~~A~~~~~~I~~~m~~al~~~~~~~~~~ap~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~d-------- 598 (723)
T 3cdi_A 527 VALNQAKGARLHILGVMEQAINAPRGDISEFAPRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIEDD-------- 598 (723)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCC----------------------------------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcchhccccCceEEEEEECHHHhcccccccceeeeeeehhhCceEEecCC--------
Confidence 455667777777877665433221111122234456788999999999999999999999999999988543
Q ss_pred CCCceEEEecC-HHHHHHHHHHHHHHHh
Q 010373 188 SFDELLQVAGE-PAVVRKALVQIASRLH 214 (512)
Q Consensus 188 ~~dr~v~I~G~-~~~V~~A~~~I~~~l~ 214 (512)
..|.|.+. .+.+++|...|..++.
T Consensus 599 ---g~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 599 ---GTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------
T ss_pred ---ccEEEecCCHHHHHHHHHHHHHHhh
Confidence 34666554 5567778777766554
No 82
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=94.05 E-value=0.052 Score=53.82 Aligned_cols=95 Identities=31% Similarity=0.364 Sum_probs=64.1
Q ss_pred CCcccccCCCccccchhhhc-CCeEEecCCCCCCCCeEEEecCCcccCCCchhHHHHHhhCCcccccccCCCCCceeEEE
Q 010373 272 NIGGVIGKGGGIIKQIRQES-GASIKVDSSGAEGDDCIIFISTKEFFEDPSPTITAALRLQPRCSEKTERESGDPVITTR 350 (512)
Q Consensus 272 ~vg~IIGk~G~~Ik~I~~~t-ga~I~v~~~~~~~~~~ii~i~g~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~t~~ 350 (512)
-+|..||.+|.+|+.+.++- |-+|.+-.-+. + +...-.-.+.|.-...+... ........
T Consensus 246 pvGacvg~~G~ri~~i~~el~ge~Idii~~s~----------------d--~~~fi~nal~Pa~v~~v~~~-d~~~~~~~ 306 (344)
T 1hh2_P 246 PIGACIGEGGSRIAAILKELKGEKLDVLKWSD----------------D--PKQLIANALAPATVIEVEIL-DKENKAAR 306 (344)
T ss_dssp HHHHHHCTTSTTHHHHHHHTTTCEEEEEECCS----------------S--HHHHHHHHTCSSCCSEEEEE-ETTTTEEE
T ss_pred ccceeeccCCcEeHHHHHHhCCCeeeEEecCC----------------C--HHHHHHHhcCccEEEEEEEE-cCCCCEEE
Confidence 47999999999999999888 56666544221 1 12211112222111111110 01134688
Q ss_pred EEecCCceeeeecCCchhHHHHHHHhCCeEEEecC
Q 010373 351 ILVPSAQIGCLIGRGGAIISEMRSATRASIRILTN 385 (512)
Q Consensus 351 l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~ 385 (512)
+.||.++.+.-|||+|.+++--.+.||.+|.|...
T Consensus 307 v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 307 VLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 99999999999999999999999999999999653
No 83
>1hh2_P NUSA, N utilization substance protein A; transcription regulation, termination; 2.1A {Thermotoga maritima} SCOP: b.40.4.5 d.52.3.1 d.52.3.1 d.202.1.1 PDB: 1l2f_A
Probab=93.98 E-value=0.047 Score=54.18 Aligned_cols=96 Identities=22% Similarity=0.279 Sum_probs=64.2
Q ss_pred CceeeeccCCchHHHHHHHhh-CCeEEecCCCCCCCccEEEEEcCCCCcccccCCcccCcHHHHHHHHHHHHHhhhcccC
Q 010373 53 RKIGSIIGKGGEIVKQLRSET-KSNIRISETVPGCDERIVTIYSSSEGTNLFEDSGEFVSPAQDALFRVHDRIVAEDSLA 131 (512)
Q Consensus 53 ~~~g~IIGk~G~~I~~I~~~t-ga~I~i~~~~~~~~ervv~I~G~~e~~~~~~~~~~~~~~a~~a~~~i~~~i~~~~~~~ 131 (512)
+-+|+.||.+|+.|+.|.++. |-+|.|-.-. ++ ....|...+.......
T Consensus 245 DpvGacvg~~G~ri~~i~~el~ge~Idii~~s--------------~d----------------~~~fi~nal~Pa~v~~ 294 (344)
T 1hh2_P 245 DPIGACIGEGGSRIAAILKELKGEKLDVLKWS--------------DD----------------PKQLIANALAPATVIE 294 (344)
T ss_dssp CHHHHHHCTTSTTHHHHHHHTTTCEEEEEECC--------------SS----------------HHHHHHHHTCSSCCSE
T ss_pred cccceeeccCCcEeHHHHHHhCCCeeeEEecC--------------CC----------------HHHHHHHhcCccEEEE
Confidence 468999999999999999998 6777764321 01 0011111111110000
Q ss_pred CcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeec
Q 010373 132 DDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKD 179 (512)
Q Consensus 132 ~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~ 179 (512)
-.- ..+..-.+.+.||..+.+..|||+|++++--..-||.+|.|...
T Consensus 295 v~~-~d~~~~~~~v~v~~~~~s~AIGk~G~Nvrla~~Ltg~~idi~s~ 341 (344)
T 1hh2_P 295 VEI-LDKENKAARVLVPPTQLSLAIGKGGQNARLAAKLTGWKIDIKPI 341 (344)
T ss_dssp EEE-EETTTTEEEEEECTTSHHHHHCGGGHHHHHHHHHHSCEEEEEEC
T ss_pred EEE-EcCCCCEEEEEEChHHcchhhcCCCccHHHHHHHHCCEeceeec
Confidence 000 00122378899999999999999999999999999999999765
No 84
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=93.89 E-value=0.0051 Score=67.55 Aligned_cols=94 Identities=24% Similarity=0.325 Sum_probs=36.7
Q ss_pred ccCcHHHHHHHHHHHHHhhhcccCCcccCCCcceEEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccC
Q 010373 108 EFVSPAQDALFRVHDRIVAEDSLADDEFGELTLITVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCAL 187 (512)
Q Consensus 108 ~~~~~a~~a~~~i~~~i~~~~~~~~~~~~~~~~~~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~ 187 (512)
+.+..|.++...|++.+....... .+-.........|.||.+.++.+||++|.+|++|+++||+.|.|..+
T Consensus 566 ~aL~~A~~~~~~I~~~m~~al~~~-~~~~~~ap~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~d-------- 636 (757)
T 1e3p_A 566 AALKQARDARLHILDVMMEAIDTP-DEMSPNAPRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIEDD-------- 636 (757)
T ss_dssp HHHHHHHHHHHHHHHHHHHHCSSC-CCCCTTSCBCCCC------------------CTTCCCCCSCC-------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhccc-ccccccCceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecCC--------
Confidence 456667778888877765433222 21112223345688999999999999999999999999999988643
Q ss_pred CCCceEEEecC-HHHHHHHHHHHHHHH
Q 010373 188 SFDELLQVAGE-PAVVRKALVQIASRL 213 (512)
Q Consensus 188 ~~dr~v~I~G~-~~~V~~A~~~I~~~l 213 (512)
..|.|+.. .+.+++|...|..+.
T Consensus 637 ---G~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 637 ---GTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp ------CCCBSSHHHHCC---------
T ss_pred ---ceEEEecCCHHHHHHHHHHHHHhc
Confidence 34666553 556666766665543
No 85
>3cdi_A Polynucleotide phosphorylase; mRNA turnover, RNAse, RNA degradation, kinase, transferase; 2.60A {Escherichia coli} PDB: 1sro_A
Probab=92.94 E-value=0.018 Score=62.93 Aligned_cols=64 Identities=22% Similarity=0.322 Sum_probs=0.0
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHHh
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRLR 420 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l~ 420 (512)
.....+.||.+.++.|||++|.+|+.|.++||+.|.|.. +..|.|.+ +.+.+++|..+|...+.
T Consensus 559 p~~~~~~i~~~ki~~~ig~gGk~I~~I~~~~G~~IdI~~-----------dg~v~I~~~~~~~~~~a~~~i~~i~~ 623 (723)
T 3cdi_A 559 PRIHTIKINPDKIKDVIGKGGSVIRALTEETGTTIEIED-----------DGTVKIAATDGEKAKHAIRRIEEITA 623 (723)
T ss_dssp ----------------------------------------------------------------------------
T ss_pred ceEEEEEECHHHhcccccccceeeeeeehhhCceEEecC-----------CccEEEecCCHHHHHHHHHHHHHHhh
Confidence 456788999999999999999999999999999998842 34677766 45677777776665543
No 86
>1e3p_A Guanosine pentaphosphate synthetase; polyribonucleotide transferase, ATP-GTP diphosphotransferase RNA processing, RNA degradation; 2.5A {Streptomyces antibioticus} SCOP: a.4.9.1 b.40.4.5 d.14.1.4 d.14.1.4 d.52.3.1 d.101.1.1 d.101.1.1 PDB: 1e3h_A
Probab=90.18 E-value=0.016 Score=63.73 Aligned_cols=63 Identities=21% Similarity=0.252 Sum_probs=21.7
Q ss_pred eeEEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHHHHHHHHHHHH
Q 010373 346 VITTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVASSALSQVTLRL 419 (512)
Q Consensus 346 ~~t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G-~~~~v~~A~~~I~~~l 419 (512)
.....|.||.+.+|.|||++|.+||+|++.||+.|.|.. +..|.|.. +.+.++.|..+|....
T Consensus 597 p~~~~~~I~~~ki~~vIG~gGk~Ik~I~~~~G~~IdI~~-----------dG~v~Is~~~~~~~~~a~~~i~~i~ 660 (757)
T 1e3p_A 597 PRIITVKIPVDKIGEVIGPKRQMINQIQEDTGAEITIED-----------DGTIYIGAADGPAAEAARATINGIA 660 (757)
T ss_dssp CBCCCC------------------CTTCCCCCSCC-------------------CCCBSSHHHHCC---------
T ss_pred ceeEEEEEChHHeehcccccceeeehhhHhhCCEEEecC-----------CceEEEecCCHHHHHHHHHHHHHhc
Confidence 344578899999999999999999999999999999842 34677776 4566666765555443
No 87
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=69.56 E-value=1.8 Score=37.57 Aligned_cols=30 Identities=20% Similarity=-0.006 Sum_probs=25.3
Q ss_pred EEEEEecCCceeeeccCCchHHHHHHHhhC
Q 010373 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSETK 74 (512)
Q Consensus 45 ~~rilvp~~~~g~IIGk~G~~I~~I~~~tg 74 (512)
++.+.+..+..|.||||.|.|++.|+--+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~ 63 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLF 63 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHH
Confidence 456666788999999999999999987763
No 88
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=63.37 E-value=2.4 Score=33.38 Aligned_cols=29 Identities=10% Similarity=0.272 Sum_probs=24.1
Q ss_pred EEEEEecCCceeeeccCCchHHHHHHHhh
Q 010373 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (512)
Q Consensus 45 ~~rilvp~~~~g~IIGk~G~~I~~I~~~t 73 (512)
..++.|....-|.|||++|+.|++|+++.
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~l 64 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAVV 64 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHHH
Confidence 46777788889999999999999886653
No 89
>2pt7_G HP1451, hypothetical protein; ATPase, protein-protein complex, type IV secretion, hydrolas binding complex; 2.40A {Helicobacter pylori}
Probab=61.85 E-value=2.3 Score=36.81 Aligned_cols=66 Identities=9% Similarity=0.029 Sum_probs=42.5
Q ss_pred EEEEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 142 TVRMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 142 ~~~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
++.+-+..+..|.||||.|++++.||--+..-+ .+.. ...=.|-|.+-.+.-++.+..++..+.+.
T Consensus 34 ~i~i~i~ged~glLIGK~G~TL~ALQyL~~~~v--n~~~-------~~~V~LDve~YRerReetL~~lA~~~A~k 99 (152)
T 2pt7_G 34 VLLIDIDGEDSALLIGEKGYRYKALSYLLFNWI--HPTY-------GYSIRLEISTFLQNQEKVMDTQLQSVIMT 99 (152)
T ss_dssp EEEEEEEEGGGTTTTCGGGHHHHHHHHHHHHHH--HHHH-------SCEEEEEETTHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEecCCcceEECCCCcchHHHHHHHHHHh--hhcC-------CceEEEEhHHhHHHHHHHHHHHHHHHHHH
Confidence 566777889999999999999999985432111 1100 00012445666777777777777777653
No 90
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=56.65 E-value=24 Score=25.29 Aligned_cols=29 Identities=21% Similarity=0.300 Sum_probs=24.0
Q ss_pred CCceEEEEEcCHHHHHHHHHHHHHHHhhc
Q 010373 394 EDEEMVQITGSLDVASSALSQVTLRLRAN 422 (512)
Q Consensus 394 ~~~r~V~I~G~~~~v~~A~~~I~~~l~~~ 422 (512)
.++-.+.|+|-|++|.+-+..-.++|...
T Consensus 39 gndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 39 GNDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 35567999999999999988888888764
No 91
>1wh9_A 40S ribosomal protein S3; KH domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, ribosome; NMR {Homo sapiens} SCOP: d.52.3.1
Probab=54.13 E-value=3.9 Score=32.21 Aligned_cols=28 Identities=21% Similarity=0.423 Sum_probs=22.9
Q ss_pred EEEEEecCCceeeeecCCchhHHHHHHH
Q 010373 348 TTRILVPSAQIGCLIGRGGAIISEMRSA 375 (512)
Q Consensus 348 t~~l~VP~~~vG~IIGkgG~~IkeI~~~ 375 (512)
.+++.|....-|.|||++|..|++|+..
T Consensus 36 ~i~I~I~tarPg~vIGkkG~~Ie~L~~~ 63 (92)
T 1wh9_A 36 RTEIIILATRTQNVLGEKGRRIRELTAV 63 (92)
T ss_dssp CEEEEEEESCHHHHHCGGGHHHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCcHHHHHHHHH
Confidence 4677778888899999999988887653
No 92
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=48.22 E-value=39 Score=27.35 Aligned_cols=47 Identities=21% Similarity=0.259 Sum_probs=33.5
Q ss_pred hHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhch
Q 010373 368 IISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANT 423 (512)
Q Consensus 368 ~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~ 423 (512)
.|++-|+-.|+---.. +.++-.+.|+|-|++|.+-+..-.++|...+
T Consensus 104 mirqarkfagtvtytl---------~gn~l~i~itgvpeqvrkelakeaerl~~ef 150 (170)
T 4hhu_A 104 MIRQARKFAGTVTYTL---------SGNRLVIVITGVPEQVRKELAKEAERLKAEF 150 (170)
T ss_dssp HHHHHHHTTCEEEEEE---------CSSEEEEEEESCCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcceEEEEE---------eCCEEEEEEeCCcHHHHHHHHHHHHHHHHhc
Confidence 4566777777432222 1345578999999999999998889998753
No 93
>4hhu_A OR280; engineered protein, PSI-biology, structural genomi unknown function; HET: AE4 PG4; 2.00A {Synthetic construct}
Probab=43.23 E-value=1.3e+02 Score=24.30 Aligned_cols=28 Identities=32% Similarity=0.458 Sum_probs=22.8
Q ss_pred CCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 189 FDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 189 ~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
++-.+.|+|-|++|.+-+..=.++|..+
T Consensus 122 n~l~i~itgvpeqvrkelakeaerl~~e 149 (170)
T 4hhu_A 122 NRLVIVITGVPEQVRKELAKEAERLKAE 149 (170)
T ss_dssp SEEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CEEEEEEeCCcHHHHHHHHHHHHHHHHh
Confidence 4557899999999999887777777663
No 94
>3ul0_C Nuclear CAP-binding protein subunit 1; arm repeat, armadillo repeat, nuclear transport, nuclear LOC signal binding, importin beta binding; 2.00A {Mus musculus} PDB: 3ukz_C
Probab=36.96 E-value=38 Score=19.05 Aligned_cols=23 Identities=22% Similarity=0.427 Sum_probs=11.8
Q ss_pred cCCCccCCCCCcCCCCCCCCCCCCC
Q 010373 8 NYGKRTHFQSDAATNGGSKRRNPGD 32 (512)
Q Consensus 8 ~~~kr~~~~~~~~~~~~~~~~~~~~ 32 (512)
++.+|.|+ |.++.|+.-+|+.++
T Consensus 2 smsrrrhs--dendggq~hkrr~ts 24 (26)
T 3ul0_C 2 SMSRRRHS--DENDGGQPHKRRKTS 24 (26)
T ss_dssp -CCCCCCT--TSCSSCCCSCCCCCC
T ss_pred cccccccc--cccCCCCcccccccc
Confidence 34556665 555555555555443
No 95
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=36.21 E-value=3.9 Score=37.81 Aligned_cols=70 Identities=9% Similarity=0.123 Sum_probs=45.8
Q ss_pred EEEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHHHHHHHHHHHHHHhhchh
Q 010373 348 TTRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDVASSALSQVTLRLRANTF 424 (512)
Q Consensus 348 t~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~v~~A~~~I~~~l~~~~~ 424 (512)
+..|.|..+..|.+|||.|.+++-||-.+..-+.-... ....-++-|-|=.+.-+..+..+...+.+...
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn~~~~-------~~~rv~LDi~~YR~rR~e~L~~lA~~~A~kV~ 162 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVNKSSS-------DYIRVKLDTENYRERRKETLETLAKNIAYKVK 162 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHHHTCS-------SCCEEEEESTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHHhcCC-------CceEEEEecchHHHHHHHHHHHHHHHHHHHHH
Confidence 34556667789999999999999999888643322110 01123456666666677777777777766544
No 96
>3gku_A Probable RNA-binding protein; APC21302, clostridium symbiosum ATCC 14 structural genomics, PSI-2, protein structure initiative; 2.95A {Clostridium symbiosum atcc 14940}
Probab=33.22 E-value=13 Score=34.32 Aligned_cols=34 Identities=18% Similarity=0.207 Sum_probs=27.2
Q ss_pred EEEEEecCCceeeeccCCchHHHHHHHhhCCeEE
Q 010373 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSETKSNIR 78 (512)
Q Consensus 45 ~~rilvp~~~~g~IIGk~G~~I~~I~~~tga~I~ 78 (512)
.+.|.+..+..|.||||.|.+++.||--+...+.
T Consensus 93 ~i~i~i~g~d~g~LIGk~G~tLdALQyL~~~~vn 126 (225)
T 3gku_A 93 EMNVNLKGDDMGILIGKRGQTLDSLQYLVSLVVN 126 (225)
T ss_dssp EEEEEEECHHHHHCSTTHHHHHHHHHHHHHHHHH
T ss_pred EEEEEEcCCccceeecCCCeEhHHHHHHHHHHHH
Confidence 3455566778999999999999999998865443
No 97
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=30.19 E-value=75 Score=25.15 Aligned_cols=51 Identities=8% Similarity=0.015 Sum_probs=35.6
Q ss_pred ChhHHHHHhhcCceEEEeecCC--CCcccCCCCceEEEecCHHHHHHHHHHHHH
Q 010373 160 GQVIQNIRTETRAQIRILKDEH--LPLCALSFDELLQVAGEPAVVRKALVQIAS 211 (512)
Q Consensus 160 G~~Ik~I~~~tga~I~i~~~~~--~p~~~~~~dr~v~I~G~~~~V~~A~~~I~~ 211 (512)
.-.|.+|..++++.++|....- +-... -..-+|.+.|+.+++.+|+..+.+
T Consensus 35 ~PiIs~l~~~~~v~vnIL~g~I~~i~~~~-~G~L~v~l~G~~~~~~~ai~~L~~ 87 (106)
T 3dhx_A 35 APLLSETARRFNVNNNIISAQMDYAGGVK-FGIMLTEMHGTQQDTQAAIAWLQE 87 (106)
T ss_dssp CCHHHHHHHHSCCEEEEEEEEEEEETTEE-EEEEEEEEESCHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHCCCEEEEEEEeEEECCee-EEEEEEEEeCCHHHHHHHHHHHHH
Confidence 4578999999999999986521 00000 112357899999999999887754
No 98
>2kl8_A OR15; structural genomics, PSI-2, protein structure initiative, de novo protein, ferrodoxin fold; NMR {Artificial gene}
Probab=29.66 E-value=89 Score=22.35 Aligned_cols=29 Identities=34% Similarity=0.484 Sum_probs=23.3
Q ss_pred CCCceEEEecCHHHHHHHHHHHHHHHhcC
Q 010373 188 SFDELLQVAGEPAVVRKALVQIASRLHEN 216 (512)
Q Consensus 188 ~~dr~v~I~G~~~~V~~A~~~I~~~l~~~ 216 (512)
.+|-.+.|+|.+++|.+-+..-.++|.++
T Consensus 39 gndleiritgvpeqvrkelakeaerlake 67 (85)
T 2kl8_A 39 GNDLEIRITGVPEQVRKELAKEAERLAKE 67 (85)
T ss_dssp SSCEEEEEESCCHHHHHHHHHHHHHHHHH
T ss_pred CCeeEEEEecChHHHHHHHHHHHHHHHHh
Confidence 34556999999999999887777777663
No 99
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=29.45 E-value=16 Score=33.31 Aligned_cols=28 Identities=21% Similarity=0.399 Sum_probs=22.7
Q ss_pred EEEEecCCceeeeccCCchHHHHHHHhh
Q 010373 46 YRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (512)
Q Consensus 46 ~rilvp~~~~g~IIGk~G~~I~~I~~~t 73 (512)
.++.|-...-|.|||++|+.|++|+++.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l 69 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRIL 69 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 4566667788999999999999986653
No 100
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=28.82 E-value=16 Score=33.92 Aligned_cols=28 Identities=11% Similarity=0.259 Sum_probs=23.8
Q ss_pred EEEEecCCceeeeccCCchHHHHHHHhh
Q 010373 46 YRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (512)
Q Consensus 46 ~rilvp~~~~g~IIGk~G~~I~~I~~~t 73 (512)
.+|.|-...-|.|||++|+.|++|+.+.
T Consensus 46 i~I~I~t~rPg~VIGkkG~~I~~L~~~l 73 (240)
T 3u5c_D 46 TEVIIRATRTQDVLGENGRRINELTLLV 73 (240)
T ss_dssp EEEEEEESCHHHHHTTTTCTHHHHHHHH
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 5677777889999999999999987664
No 101
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=28.70 E-value=79 Score=28.99 Aligned_cols=48 Identities=17% Similarity=0.331 Sum_probs=39.2
Q ss_pred EEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEcCHHH
Q 010373 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITGSLDV 407 (512)
Q Consensus 349 ~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G~~~~ 407 (512)
.-+.++...+..++|+++..++.|.+.+++.|-+-. +-.|=|.++...
T Consensus 138 ~v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~-----------NG~IWi~~~~~~ 185 (229)
T 2ba0_A 138 RIVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQ-----------NGLIWVNGDRRK 185 (229)
T ss_dssp EEEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECT-----------TSEEEEESCHHH
T ss_pred EEEEECHHHhHHHhcCCchHHHHhcccCCeEEEEEC-----------CcEEEEeCCchh
Confidence 446789999999999999999999999999998831 235668888763
No 102
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=28.32 E-value=20 Score=33.30 Aligned_cols=30 Identities=23% Similarity=0.132 Sum_probs=25.2
Q ss_pred eEEEEEecCCceeeeccCCchHHHHHHHhh
Q 010373 44 TVYRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (512)
Q Consensus 44 ~~~rilvp~~~~g~IIGk~G~~I~~I~~~t 73 (512)
...+|.|-....|.|||++|+.|++|+++.
T Consensus 47 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 76 (243)
T 2xzm_C 47 TKTEIRIKATKPQQVIGVEGKKHKELTQFL 76 (243)
T ss_dssp SCEEEEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred CeEEEEEEcCCCceEECCCchHHHHHHHHH
Confidence 346777788889999999999999987764
No 103
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=26.49 E-value=16 Score=33.63 Aligned_cols=29 Identities=14% Similarity=0.300 Sum_probs=24.7
Q ss_pred EEEEEecCCceeeeccCCchHHHHHHHhh
Q 010373 45 VYRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (512)
Q Consensus 45 ~~rilvp~~~~g~IIGk~G~~I~~I~~~t 73 (512)
..++.|-...-|.|||++|+.|++|+++.
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~l 73 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSVV 73 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHHH
Confidence 46777888889999999999999987664
No 104
>3u5c_D RP13, YS3, 40S ribosomal protein S3; translation, ribosome, ribosomal, ribosomal R ribosomal protein, eukaryotic ribosome, RNA-protein C; 3.00A {Saccharomyces cerevisiae} PDB: 3izb_B 3o30_C 3o2z_C 3u5g_D 1s1h_C 3jyv_C*
Probab=25.78 E-value=23 Score=32.88 Aligned_cols=28 Identities=18% Similarity=0.393 Sum_probs=23.0
Q ss_pred EEEEEecCCceeeeecCCchhHHHHHHH
Q 010373 348 TTRILVPSAQIGCLIGRGGAIISEMRSA 375 (512)
Q Consensus 348 t~~l~VP~~~vG~IIGkgG~~IkeI~~~ 375 (512)
.+++.|....-|.|||++|..|++|+..
T Consensus 45 ~i~I~I~t~rPg~VIGkkG~~I~~L~~~ 72 (240)
T 3u5c_D 45 KTEVIIRATRTQDVLGENGRRINELTLL 72 (240)
T ss_dssp CEEEEEEESCHHHHHTTTTCTHHHHHHH
T ss_pred eEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 3567777888899999999999987654
No 105
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=25.60 E-value=19 Score=34.61 Aligned_cols=31 Identities=26% Similarity=0.401 Sum_probs=24.2
Q ss_pred cceEEEEEeeCC-ceeEEecCCChhHHHHHhh
Q 010373 139 TLITVRMLVPAD-QIGCVIGKGGQVIQNIRTE 169 (512)
Q Consensus 139 ~~~~~~llVP~~-~vg~IIGk~G~~Ik~I~~~ 169 (512)
..+...++|..+ +.+.||||+|+.||+|..+
T Consensus 238 ~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ 269 (308)
T 3iev_A 238 LVIKGEIIVDRENLKPIIIGKKGQRLKEIGKR 269 (308)
T ss_dssp EEEEEEEEESSGGGHHHHHCGGGHHHHHHHHH
T ss_pred EEEEEEEEEccCCcceEEEcCCcHHHHHHHHH
Confidence 356677888854 7889999999999877643
No 106
>3j20_C 30S ribosomal protein S3P; archaea, archaeal, KINK-turn, protein synthe ribosome; 6.60A {Pyrococcus furiosus}
Probab=24.11 E-value=22 Score=32.30 Aligned_cols=35 Identities=31% Similarity=0.544 Sum_probs=25.8
Q ss_pred EEEEecCCceeeeecCCchhHHHHHH----HhC---CeEEEe
Q 010373 349 TRILVPSAQIGCLIGRGGAIISEMRS----ATR---ASIRIL 383 (512)
Q Consensus 349 ~~l~VP~~~vG~IIGkgG~~IkeI~~----~TG---a~I~i~ 383 (512)
+++.|....-|.|||++|+.|++|+. .++ .+|.|.
T Consensus 42 ~~I~I~t~rPg~vIG~~G~~I~~L~~~l~k~~~~~~v~I~i~ 83 (210)
T 3j20_C 42 TKVIIFAANPGYVIGRGGRRIRELTRILEKQFGLENPQIEVE 83 (210)
T ss_dssp CEEEEEESCHHHHHCSSSHHHHHHHHHHHHHSSCSSCEEEEE
T ss_pred EEEEEEeCCCceEEcCCchhHHHHHHHHHHHhCCCceEEEEE
Confidence 46667777889999999999998754 555 445553
No 107
>3dhx_A Methionine import ATP-binding protein METN; methionine uptake, regulation, amino-acid transport, ATP-BIN hydrolase, inner membrane, membrane; 2.10A {Escherichia coli} SCOP: d.58.18.13
Probab=23.55 E-value=1e+02 Score=24.31 Aligned_cols=54 Identities=9% Similarity=0.067 Sum_probs=36.4
Q ss_pred CchhHHHHHHHhCCeEEEecCCCCCC-CCCCCceEEEEEcCHHHHHHHHHHHHHH
Q 010373 365 GGAIISEMRSATRASIRILTNENVPK-VAYEDEEMVQITGSLDVASSALSQVTLR 418 (512)
Q Consensus 365 gG~~IkeI~~~TGa~I~i~~~~~~p~-~~~~~~r~V~I~G~~~~v~~A~~~I~~~ 418 (512)
....|.+|.+++++.+.|....-..- ...-..-+|.+.|+.+++++|+..+.+.
T Consensus 34 ~~PiIs~l~~~~~v~vnIL~g~I~~i~~~~~G~L~v~l~G~~~~~~~ai~~L~~~ 88 (106)
T 3dhx_A 34 DAPLLSETARRFNVNNNIISAQMDYAGGVKFGIMLTEMHGTQQDTQAAIAWLQEH 88 (106)
T ss_dssp TCCHHHHHHHHSCCEEEEEEEEEEEETTEEEEEEEEEEESCHHHHHHHHHHHHHT
T ss_pred ChhHHHHHHHHHCCCEEEEEEEeEEECCeeEEEEEEEEeCCHHHHHHHHHHHHHC
Confidence 35589999999999999875321000 0001223689999999999998776543
No 108
>2xzm_C KH domain containing protein; ribosome, translation; 3.93A {Tetrahymena thermophila} PDB: 2xzn_C
Probab=23.54 E-value=28 Score=32.36 Aligned_cols=28 Identities=21% Similarity=0.242 Sum_probs=23.6
Q ss_pred EEEEEecCCceeeeecCCchhHHHHHHH
Q 010373 348 TTRILVPSAQIGCLIGRGGAIISEMRSA 375 (512)
Q Consensus 348 t~~l~VP~~~vG~IIGkgG~~IkeI~~~ 375 (512)
.+++.|....-|.|||++|..|++|+..
T Consensus 48 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 75 (243)
T 2xzm_C 48 KTEIRIKATKPQQVIGVEGKKHKELTQF 75 (243)
T ss_dssp CEEEEEEESCHHHHHCSSSHHHHHHHHH
T ss_pred eEEEEEEcCCCceEECCCchHHHHHHHH
Confidence 4677788888899999999999998764
No 109
>3r8n_C 30S ribosomal protein S3; protein biosynthesis, RNA, tRNA, transfer RNA, 16S ribosomal subunit, RRF; 3.00A {Escherichia coli} PDB: 2gyb_C 2gy9_C* 2ykr_C 3fih_C* 3j18_C* 2wwl_C 3oar_C 3oaq_C 3ofb_C 3ofa_C 3ofp_C 3ofx_C 3ofy_C 3ofo_C 3r8o_C 4a2i_C 4gd1_C 4gd2_C
Probab=23.43 E-value=16 Score=33.12 Aligned_cols=28 Identities=36% Similarity=0.449 Sum_probs=21.8
Q ss_pred EEEEecCCceeeeccCCchHHHHHHHhh
Q 010373 46 YRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (512)
Q Consensus 46 ~rilvp~~~~g~IIGk~G~~I~~I~~~t 73 (512)
.++.|-....|.|||++|+.|++|+++.
T Consensus 63 i~I~I~~~rpg~viGk~G~~i~~L~~~l 90 (206)
T 3r8n_C 63 IRVTIHTARPGIVIGKKGEDVEKLRKVV 90 (206)
T ss_dssp BCCEEEESCHHHHHCSSSHHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHHH
Confidence 4455666778899999999999886543
No 110
>3iev_A GTP-binding protein ERA; ERA, GTPase, KH domain, anti-SD, 16S rRNA, 30S ribosome ASSE GTP-binding, nucleotide-binding; HET: GNP; 1.90A {Aquifex aeolicus} PDB: 3r9w_A* 3r9x_A*
Probab=22.54 E-value=33 Score=32.88 Aligned_cols=39 Identities=21% Similarity=0.279 Sum_probs=29.2
Q ss_pred CceeEEEEEecCC-ceeeeecCCchhHHHHHHH--------hCCeEEE
Q 010373 344 DPVITTRILVPSA-QIGCLIGRGGAIISEMRSA--------TRASIRI 382 (512)
Q Consensus 344 ~~~~t~~l~VP~~-~vG~IIGkgG~~IkeI~~~--------TGa~I~i 382 (512)
...+...+.|..+ +-+-||||+|+.||+|... .|++|.+
T Consensus 237 ~~~i~a~i~ve~~~~k~i~ig~~g~~ik~i~~~ar~~~~~~~~~~v~l 284 (308)
T 3iev_A 237 MLVIKGEIIVDRENLKPIIIGKKGQRLKEIGKRARQELELILGRPVYL 284 (308)
T ss_dssp SEEEEEEEEESSGGGHHHHHCGGGHHHHHHHHHHHHHHHHHHTSCEEE
T ss_pred eEEEEEEEEEccCCcceEEEcCCcHHHHHHHHHHHHHHHHHhCCceEE
Confidence 3456778888865 5688999999999977554 5666655
No 111
>2zkq_c 40S ribosomal protein S3E; protein-RNA complex, 40S ribosomal subunit, ribosomal protein/RNA complex; 8.70A {Canis familiaris}
Probab=22.50 E-value=19 Score=33.54 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=25.0
Q ss_pred eEEEEEecCCceeeeccCCchHHHHHHHhh
Q 010373 44 TVYRYLCPLRKIGSIIGKGGEIVKQLRSET 73 (512)
Q Consensus 44 ~~~rilvp~~~~g~IIGk~G~~I~~I~~~t 73 (512)
...++.|-....|.|||++|+.|++|+++.
T Consensus 44 ~~i~I~I~tarPg~vIGkkG~~I~~L~~~L 73 (243)
T 2zkq_c 44 TRTEIIILATRTQNVLGEKGRRIRELTAVV 73 (243)
T ss_dssp TEECCEEEESCHHHHHCGGGHHHHHHHHHH
T ss_pred CcEEEEEEeCCCceEEcCCchHHHHHHHHH
Confidence 346677777889999999999999988764
No 112
>3iz6_B 40S ribosomal protein S3 (S3P); eukaryotic ribosome,homology modeling,de novo modeling,ribos proteins,novel ribosomal proteins, ribosome; 5.50A {Triticum aestivum}
Probab=22.36 E-value=23 Score=32.58 Aligned_cols=28 Identities=25% Similarity=0.452 Sum_probs=23.3
Q ss_pred EEEEEecCCceeeeecCCchhHHHHHHH
Q 010373 348 TTRILVPSAQIGCLIGRGGAIISEMRSA 375 (512)
Q Consensus 348 t~~l~VP~~~vG~IIGkgG~~IkeI~~~ 375 (512)
.+++.|....-|.|||++|+.|++|+..
T Consensus 45 ~i~I~I~tarPg~vIGkkG~~I~~L~~~ 72 (227)
T 3iz6_B 45 RTEIIIRATRTQNVLGEKGRRIRELTSV 72 (227)
T ss_dssp EECCEEECTTHHHHHCSSSSHHHHHHHH
T ss_pred cEEEEEEeCCCceEEcCCchhHHHHHHH
Confidence 4667788888999999999999987653
No 113
>2z0s_A Probable exosome complex RNA-binding protein 1; alpha/beta protein, cytoplasm, structural genomics, NPPSFA; 3.20A {Aeropyrum pernix} SCOP: b.40.4.5 d.51.1.1
Probab=22.12 E-value=1.3e+02 Score=27.53 Aligned_cols=50 Identities=14% Similarity=0.282 Sum_probs=39.4
Q ss_pred EEEEecCCceeeeecCCchhHHHHHHHhCCeEEEecCCCCCCCCCCCceEEEEEc-CHHHHH
Q 010373 349 TRILVPSAQIGCLIGRGGAIISEMRSATRASIRILTNENVPKVAYEDEEMVQITG-SLDVAS 409 (512)
Q Consensus 349 ~~l~VP~~~vG~IIGkgG~~IkeI~~~TGa~I~i~~~~~~p~~~~~~~r~V~I~G-~~~~v~ 409 (512)
.-+.++...+..++|+++..++.|.+.+++.|-+-. +..|-|.+ ++....
T Consensus 150 ~vv~vs~~~~~rl~~~~~~~l~~l~~~~~~~i~vG~-----------NG~IWi~~~~~~~~~ 200 (235)
T 2z0s_A 150 KIVEISPAKVPRVIGRKMSMLKTLEEKTECKIFVAR-----------NGRIHLECPNEDLEA 200 (235)
T ss_dssp EEEECCGGGSGGGTCGGGHHHHHHHHHHCCEEEEET-----------TTEEEEECSCHHHHH
T ss_pred EEEEECHHHhHHHhcCcchHHHHhcccCCeEEEEeC-----------CCEEEEecCCHHHHH
Confidence 456889999999999999999999999999998832 23677886 443333
No 114
>3i1m_C 30S ribosomal protein S3; ribosome structure, protein-RNA complex, ribonucleoprotein, ribosomal protein, RNA-binding, rRNA-binding, antibiotic resistance; 3.19A {Escherichia coli k-12} PDB: 1vs7_C* 3e1a_O 3e1c_O 1vs5_C 3i1o_C 3i1q_C 3i1s_C 3i1z_C 3i21_C 3izv_G* 3izw_G* 3kc4_C 3or9_C 3ora_C 3sfs_C* 3uoq_C* 4gaq_C* 4gas_C* 2qal_C* 1p6g_C ...
Probab=21.53 E-value=19 Score=33.37 Aligned_cols=27 Identities=37% Similarity=0.465 Sum_probs=21.6
Q ss_pred EEEEecCCceeeeccCCchHHHHHHHh
Q 010373 46 YRYLCPLRKIGSIIGKGGEIVKQLRSE 72 (512)
Q Consensus 46 ~rilvp~~~~g~IIGk~G~~I~~I~~~ 72 (512)
++|.|-....|.|||++|+.|++|+.+
T Consensus 64 i~I~I~t~rPg~vIGkkG~~I~~L~~~ 90 (233)
T 3i1m_C 64 IRVTIHTARPGIVIGKKGEDVEKLRKV 90 (233)
T ss_dssp BCCEEEESCHHHHHCSTTHHHHHHHHH
T ss_pred EEEEEEECCCCccccCcchHHHHHHHH
Confidence 455666677889999999999988654
No 115
>2ba0_A Archeal exosome RNA binding protein RRP4; RNAse PH, RNA degradation, exoribonuclease, S1domain, KH domain, archaeal; 2.70A {Archaeoglobus fulgidus} SCOP: b.40.4.5 b.84.4.2 d.51.1.1
Probab=21.43 E-value=1.2e+02 Score=27.80 Aligned_cols=56 Identities=27% Similarity=0.341 Sum_probs=41.8
Q ss_pred EEEeeCCceeEEecCCChhHHHHHhhcCceEEEeecCCCCcccCCCCceEEEecCHHHHHHHHHHHH
Q 010373 144 RMLVPADQIGCVIGKGGQVIQNIRTETRAQIRILKDEHLPLCALSFDELLQVAGEPAVVRKALVQIA 210 (512)
Q Consensus 144 ~llVP~~~vg~IIGk~G~~Ik~I~~~tga~I~i~~~~~~p~~~~~~dr~v~I~G~~~~V~~A~~~I~ 210 (512)
-+-++...+.+++|+++..++.|.+.+++.|-+-.. -.|-|.+.......+...|.
T Consensus 139 v~~vs~~~v~rl~~~~~~~l~~l~~~~~~ei~vG~N-----------G~IWi~~~~~~~~~~~~ai~ 194 (229)
T 2ba0_A 139 IVAINPARVPRVIGKKGSMIKLLKSELDVQIVVGQN-----------GLIWVNGDRRKVSIAEEAIY 194 (229)
T ss_dssp EEECCGGGHHHHHCGGGHHHHHHHHHHTCEEEECTT-----------SEEEEESCHHHHHHHHHHHH
T ss_pred EEEECHHHhHHHhcCCchHHHHhcccCCeEEEEECC-----------cEEEEeCCchhHHHHHHHHH
Confidence 356778888899999999999999999999988433 24778888764444444443
Done!