Query 010375
Match_columns 512
No_of_seqs 481 out of 2446
Neff 11.1
Searched_HMMs 29240
Date Mon Mar 25 05:27:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010375.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010375hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4gc0_A D-xylose-proton symport 100.0 3.4E-49 1.2E-53 393.2 41.0 446 23-492 6-482 (491)
2 1pw4_A Glycerol-3-phosphate tr 100.0 1.3E-38 4.5E-43 313.4 22.2 398 24-473 23-433 (451)
3 3o7q_A L-fucose-proton symport 100.0 3.7E-37 1.3E-41 301.8 30.7 373 27-471 24-430 (438)
4 4aps_A DI-OR tripeptide H+ sym 100.0 6.7E-32 2.3E-36 268.4 29.2 392 75-477 46-476 (491)
5 2gfp_A EMRD, multidrug resista 100.0 1.7E-34 5.7E-39 276.8 9.4 360 33-463 4-366 (375)
6 2xut_A Proton/peptide symporte 100.0 2.8E-28 9.4E-33 244.4 20.2 142 80-223 51-197 (524)
7 2cfq_A Lactose permease; trans 99.9 1.9E-27 6.4E-32 230.7 13.4 356 77-477 37-404 (417)
8 3o7q_A L-fucose-proton symport 99.4 1E-12 3.4E-17 128.1 13.5 154 287-451 28-182 (438)
9 1pw4_A Glycerol-3-phosphate tr 99.4 4.4E-12 1.5E-16 124.0 15.1 147 76-224 281-433 (451)
10 2cfq_A Lactose permease; trans 99.4 1.4E-12 4.7E-17 126.1 9.2 146 81-228 257-404 (417)
11 4aps_A DI-OR tripeptide H+ sym 99.3 3.4E-12 1.2E-16 126.3 10.8 168 290-471 18-194 (491)
12 2gfp_A EMRD, multidrug resista 99.3 4.9E-12 1.7E-16 120.5 10.2 171 293-477 8-179 (375)
13 2xut_A Proton/peptide symporte 99.3 2.3E-11 7.8E-16 121.4 15.5 163 297-472 24-197 (524)
14 4gc0_A D-xylose-proton symport 99.1 6.6E-10 2.3E-14 109.8 15.8 150 79-228 308-467 (491)
15 2g9p_A Antimicrobial peptide l 58.6 4.4 0.00015 19.4 1.1 14 102-115 2-15 (26)
16 3arc_T Photosystem II reaction 24.4 87 0.003 16.7 2.8 11 219-229 18-28 (32)
17 4dve_A Biotin transporter BIOY 22.2 1.6E+02 0.0055 24.0 5.5 25 89-113 99-123 (198)
No 1
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=100.00 E-value=3.4e-49 Score=393.22 Aligned_cols=446 Identities=26% Similarity=0.468 Sum_probs=354.1
Q ss_pred CchHHHHHHHHHHHHhhhhhhhccccccccccHHHHHHhhhhhhhhhcccccCCccccCcchhHHHHHHHHHHHHHHHHh
Q 010375 23 VTPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFV 102 (512)
Q Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~ 102 (512)
.+++.+.++++++++.+++|||.++++.+ +|.+.++|..+. ..+.+.+..+.|++.+++.+|..+|+++
T Consensus 6 ~~~y~~~i~~~a~lg~~~~Gyd~~~i~~~--~~~~~~~~~~~~---------~~~~~~~~~~~g~~~s~~~~G~~iG~~~ 74 (491)
T 4gc0_A 6 NSSYIFSITLVATLGGLLFGYDTAVISGT--VESLNTVFVAPQ---------NLSESAANSLLGFCVASALIGCIIGGAL 74 (491)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHGGGGT--HHHHHHHHTGGG---------CCCHHHHHHHHHHHHHTHHHHHHHHHHH
T ss_pred ChHHHhhHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHhcCCC---------CCCcccHHHHHHHHHHHHHHHHHHHHHH
Confidence 34567888888889999999999999876 677777774332 1122446778899999999999999999
Q ss_pred hhhhhhhhchhHHHHHHHHHHHHHHHHHH------------------hhchHHHHHHHHHHHhhhhhhccchhhhhhhhc
Q 010375 103 ASPVTRDYGRRASIICGGISFLLGAALNA------------------AAANLAMLLTGRILLGVGIGFGNQAVPLYLSEM 164 (512)
Q Consensus 103 ~g~l~dr~Grr~~l~~~~~~~~~~~~~~~------------------~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~ 164 (512)
+|+++||+|||++++++.+++.+++++++ +++|++.++++|+++|++.|+..+....+++|+
T Consensus 75 ~G~laDr~GRk~~l~~~~~l~~i~~i~~a~~~~~~~~~~~~~~~~~~~a~~~~~l~~~R~l~G~g~G~~~~~~~~~i~E~ 154 (491)
T 4gc0_A 75 GGYCSNRFGRRDSLKIAAVLFFISGVGSAWPELGFTSINPDNTVPVYLAGYVPEFVIYRIIGGIGVGLASMLSPMYIAEL 154 (491)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHHHHHHHHCTTTTTSCSSSSSSCCGGGGGCHHHHHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhhhhhhhcchhHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 99999999999999999999999999998 478999999999999999999999999999999
Q ss_pred CCCCCchhHHHHHHHHHHHHHHHHHHHHHhhccc------CCCchhHHHHhhHHHHHHHHHHhhccCCChhHHHHcCCHH
Q 010375 165 APTHLRGGLNMMFQLATTLGIFTANMINYGTQKL------ETWGWRLSLGLAAAPALMMTVGGILLPETPNSLIERGKKV 238 (512)
Q Consensus 165 ~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~------~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~p~~l~~~~~~~ 238 (512)
.|+++|++..++.+.+..+|.++++.++...... ...+||+.+.+..++.++..+..+++||||+|+..+++.+
T Consensus 155 ~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~peSp~~L~~~~~~~ 234 (491)
T 4gc0_A 155 APAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTVPESPRWLMSRGKQE 234 (491)
T ss_dssp SCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGSCCCHHHHHHTTCHH
T ss_pred CCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcCCCChHHHHHcCchh
Confidence 9999999999999999999999999885444322 2357999999999999988888899999999999999999
Q ss_pred HHHHHHHHHcCCchhhHHHHHHHHHHHhhcccCcccHHHhcccchhHHHHHHHHHHHHHhhchhHHHhhHHHHHHhcCCC
Q 010375 239 EGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQSMGFK 318 (512)
Q Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ 318 (512)
++++.+++..+.+..+++..+.++....+++.. ..... ...++.........+....+...+.+|.|.+.+..+.+
T Consensus 235 ~a~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (491)
T 4gc0_A 235 QAEGILRKIMGNTLATQAVQEIKHSLDHGRKTG-GRLLM---FGVGVIVIGVMLSIFQQFVGINVVLYYAPEVFKTLGAS 310 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT-THHHH---SCCTHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSSCC
T ss_pred HHHHhHHHhcCCchhHHHHHHHHHHHHhhhhhh-hHHHH---hcccHHHHHHHHHHHHHHhhhhHHHhcchHHHHhcCCC
Confidence 999998887665544443333322222222111 11111 22334455666667777778888999999998888888
Q ss_pred CchhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHHHHHH
Q 010375 319 GDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVL 398 (512)
Q Consensus 319 ~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 398 (512)
...........++..+++.++++++.||+|||+.+..+.....++++.+...... ....+..+..+.++..
T Consensus 311 ~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~---------~~~~~~~~~~~~~~~~ 381 (491)
T 4gc0_A 311 TDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYT---------QAPGIVALLSMLFYVA 381 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHT---------TCCHHHHHHHHHHHHH
T ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhc---------ccchHHHHHHHHHHHH
Confidence 8788888888899999999999999999999999998888888777766554321 1223444555566666
Q ss_pred HhhhcccceeeeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhc------c-hhhHHHHHHHHHHHHHHHhh
Q 010375 399 AFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSF------K-FGIFLFFAGWVTIMTIFVYF 471 (512)
Q Consensus 399 ~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~------g-~~~~~~~~~~~~~~~~~~~~ 471 (512)
+++.++.++.+.+.+|++|++.|+++.|+.+..+++++++++.+.+.+.+.. + ...++++++++++..++.++
T Consensus 382 ~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~ 461 (491)
T 4gc0_A 382 AFAMSWGPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWK 461 (491)
T ss_dssp HHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHh
Confidence 6777777888889999999999999999999999999999998887664432 2 23456677777788888889
Q ss_pred ccccCCCCCHHHHHHHHhccc
Q 010375 472 FLPETKGVPIEEMILLWRKHW 492 (512)
Q Consensus 472 ~~~~~~~~~~~~~~~~~~~~~ 492 (512)
++||||++++||+++..+++.
T Consensus 462 ~~PETkg~tLeei~~~f~~~~ 482 (491)
T 4gc0_A 462 FVPETKGKTLEELEALWEPET 482 (491)
T ss_dssp HCCCCTTCCHHHHGGGTC---
T ss_pred eecCCCCCCHHHHHHHhCCCC
Confidence 999999999999987765543
No 2
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=100.00 E-value=1.3e-38 Score=313.35 Aligned_cols=398 Identities=13% Similarity=0.061 Sum_probs=287.8
Q ss_pred chHHHHHHHHHHHHhhhhhhhccccccccccHHHHHHhhhhhhhhhcccccCCccccCcchhHHHHHHHHHHHHHHHHhh
Q 010375 24 TPSVIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVA 103 (512)
Q Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~ 103 (512)
+++++.....++++.+..+++...+++. +| .+ .+++ .+..+.|++.+.+.++..++++++
T Consensus 23 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~-------------~~~~-~s~~~~g~~~~~~~~~~~~~~~~~ 82 (451)
T 1pw4_A 23 RRLRWQIFLGIFFGYAAYYLVRKNFALA--MP----YL-------------VEQG-FSRGDLGFALSGISIAYGFSKFIM 82 (451)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTSHHHH--HH----HT-------------TSST-TCSSCHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH--HH----HH-------------HHHh-ccHhHHHHHHHHHHHHHHHHHHhH
Confidence 3445666666777778888877665544 22 22 5556 799999999999999999999999
Q ss_pred hhhhhhhchhHHHHHHHHHHHHHHHHHHh----hchHHHHHHHHHHHhhhhhhccchhhhhhhhcCCCCCchhHHHHHHH
Q 010375 104 SPVTRDYGRRASIICGGISFLLGAALNAA----AANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQL 179 (512)
Q Consensus 104 g~l~dr~Grr~~l~~~~~~~~~~~~~~~~----~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 179 (512)
|+++||+|||++++.+.++.+++.+++++ +++++.++++|+++|++.+...+...+++.|++|+++|++++++...
T Consensus 83 G~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~ 162 (451)
T 1pw4_A 83 GSVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNC 162 (451)
T ss_dssp HHHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHH
T ss_pred HHHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHH
Confidence 99999999999999999999999999999 99999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHhhcccCCCc-hhHHHHhhHHHHHHHHHHh-hccCCChhHHHHcCCHHHHHHHHHHHcCCchhhHHH
Q 010375 180 ATTLGIFTANMINYGTQKLETWG-WRLSLGLAAAPALMMTVGG-ILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEY 257 (512)
Q Consensus 180 ~~~lG~~~~~~~~~~~~~~~~~~-Wr~~f~~~~~~~~~~~~~~-~~~~e~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 257 (512)
+..+|.+++|.++ ....+..+ ||+.|++.++++++..++. +++||+|++...+++.+. .+..++
T Consensus 163 ~~~~g~~~g~~~~--~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~- 228 (451)
T 1pw4_A 163 AHNVGGGIPPLLF--LLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQSCGLPPIEEY-----------KNDYPD- 228 (451)
T ss_dssp HHHHHHTSHHHHH--HHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTTTCCCSCTTT-----------CCC----
T ss_pred HHHHHHHHHHHHH--HHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhhcCCCChhhh-----------cccccc-
Confidence 9999999999994 44335567 9999999998887765554 558888753211111000 000000
Q ss_pred HHHHHHHHhhcccCcc--cHHHhcccchhHHHHHHHHHHHHHhhchhHHHhhHHHHHHh-cCCCCchhhHHHHHHHHHHH
Q 010375 258 QDMVDASELANSIKHP--FRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLA 334 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~ 334 (512)
+.+++ ++++....+ .++.++++. ++...+..+...........+.|.++++ +|+++.+.+.......++.+
T Consensus 229 -~~~~~-~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~ 302 (451)
T 1pw4_A 229 -DYNEK-AEQELTAKQIFMQYVLPNKL----LWYIAIANVFVYLLRYGILDWSPTYLKEVKHFALDKSSWAYFLYEYAGI 302 (451)
T ss_dssp ------------CCTHHHHHHTSSCHH----HHHHHHHHHHHHHHHHHHHHHHHHHBTTBSCCCHHHHHHHHHHHHHHHH
T ss_pred -cchhh-hhcccccccchHHHHHcCHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHH
Confidence 00000 000000111 223333222 3444444555555667778888988887 89999999999999999999
Q ss_pred HHHHHHHHHHhhc--CChhHHHHhhHHHH-HHHHHHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhhhcccceeeee
Q 010375 335 SSTLISIATVDKL--GRRALLISGGIQMI-TCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTV 411 (512)
Q Consensus 335 ~~~~~~g~l~d~~--~~r~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 411 (512)
++.++.+++.||+ ++|+.+..+..+.. ++.+++... +....+.......+.+.+.+.. .+....+
T Consensus 303 ~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~g~~~~~~-~~~~~~~ 370 (451)
T 1pw4_A 303 PGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMN-----------PAGNPTVDMICMIVIGFLIYGP-VMLIGLH 370 (451)
T ss_dssp HHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSC-----------CTTCHHHHHHHHHHHHHHHTHH-HHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHh-----------cccCHHHHHHHHHHHHHHHhch-HHHHHHH
Confidence 9999999999999 99988777665544 333222111 1112333444444444444433 3333577
Q ss_pred ecccCChhhhhhHHHHHHHHHHH-HHHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhcc
Q 010375 412 PSEIFPLETRSAGQSITVAVNLF-FTFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFL 473 (512)
Q Consensus 412 ~~~~~p~~~~~~~~g~~~~~~~~-g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~ 473 (512)
..|.+|++.|+++.|+.+....+ |..++|.+.|.+.+..++...+.+.+++.+++.++.+..
T Consensus 371 ~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 371 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp HHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999999999 999999999999999887766666665555555554443
No 3
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=100.00 E-value=3.7e-37 Score=301.79 Aligned_cols=373 Identities=12% Similarity=0.123 Sum_probs=277.5
Q ss_pred HHHHHHHHHHHhhhhhhhccccccccccHHHHHHhhhhhhhhhcccccCCccccCcchhHHHHHHHHHHHHHHHHhhhhh
Q 010375 27 VIVACFVAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPV 106 (512)
Q Consensus 27 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l 106 (512)
.+....++++..+..+++....++. +|.+.+++ |++..+.|++.+.+.++..++++++|++
T Consensus 24 ~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~-----------------g~s~~~~g~~~~~~~~~~~i~~~~~G~l 84 (438)
T 3o7q_A 24 YIIPFALLCSLFFLWAVANNLNDIL--LPQFQQAF-----------------TLTNFQAGLIQSAFYFGYFIIPIPAGIL 84 (438)
T ss_dssp THHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHS-----------------CCCSHHHHHHHHHHHHHHHTTHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHhHHHH--HHHHHHHc-----------------CCCHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence 3344445566667777777776655 55555555 8999999999999999999999999999
Q ss_pred hhhhchhHHHHHHHHHHHHHHHHH---HhhchHHHHHHHHHHHhhhhhhccchhhhhhhhcCCCCCchhHHHHHHHHHHH
Q 010375 107 TRDYGRRASIICGGISFLLGAALN---AAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTL 183 (512)
Q Consensus 107 ~dr~Grr~~l~~~~~~~~~~~~~~---~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l 183 (512)
+||+|||++++.+.++.+++.+++ +++++++.++++|++.|++.+...+...+++.|++|+++|++++++.+.+.++
T Consensus 85 ~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~ 164 (438)
T 3o7q_A 85 MKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFNSF 164 (438)
T ss_dssp HHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHH
T ss_pred HHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999 88999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHhhccc-CCCc-------------------------hhHHHHhhHHHHHHHHHHhhc--cCCChhHHHHcC
Q 010375 184 GIFTANMINYGTQKL-ETWG-------------------------WRLSLGLAAAPALMMTVGGIL--LPETPNSLIERG 235 (512)
Q Consensus 184 G~~~~~~~~~~~~~~-~~~~-------------------------Wr~~f~~~~~~~~~~~~~~~~--~~e~p~~l~~~~ 235 (512)
|.++++.+ ..... ...+ ||+.|++.+++.++..++.++ .||+++.. +
T Consensus 165 g~~~g~~~--~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~---~ 239 (438)
T 3o7q_A 165 GAIIAVVF--GQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSDN---H 239 (438)
T ss_dssp HHHHHHHH--TTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTTC---C
T ss_pred HHHHHHHH--HHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCcccccc---c
Confidence 99999999 44443 3333 999998877776665554443 46654210 0
Q ss_pred CHHHHHHHHHHHcCCchhhHHHHHHHHHHHhhcccCcccHHHhcccchhHHHHHHHHHHHHHhhchhHHHhhHHHH-HHh
Q 010375 236 KKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVL-FQS 314 (512)
Q Consensus 236 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 314 (512)
+. +++++.+.+++++++++.. +...+..+...........+.|.+ .++
T Consensus 240 ~~---------------------------~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 288 (438)
T 3o7q_A 240 SD---------------------------AKQGSFSASLSRLARIRHW----RWAVLAQFCYVGAQTACWSYLIRYAVEE 288 (438)
T ss_dssp CC---------------------------SSTTSHHHHHHHHTTCSHH----HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred cc---------------------------ccccchhhhHHHHHhChHH----HHHHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 00 0001112234455555543 333333344444556677788888 777
Q ss_pred -cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHH
Q 010375 315 -MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVI 393 (512)
Q Consensus 315 -~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 393 (512)
+|++..+++.......++.+++.++.+++.||++||+.+..+.++..++.+++... +.. ......
T Consensus 289 ~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~r~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~-~~~~~~ 354 (438)
T 3o7q_A 289 IPGMTAGFAANYLTGTMVCFFIGRFTGTWLISRFAPHKVLAAYALIAMALCLISAFA-------------GGH-VGLIAL 354 (438)
T ss_dssp STTCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-------------CHH-HHHHHH
T ss_pred cCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHc-------------CCc-HHHHHH
Confidence 59999999999999999999999999999999999999988877766665544432 111 223333
Q ss_pred HHHHHHhhhcccceeeeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcc-hhhHHHHHHHHHHHHHHHhh
Q 010375 394 CLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFK-FGIFLFFAGWVTIMTIFVYF 471 (512)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~ 471 (512)
.+.+.+.+.. .+..+.+..|.+|++ ++.+.++.. .+.+++.++|.+.|.+.+..+ +...+.+.+++.+...+..+
T Consensus 355 ~~~g~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~ 430 (438)
T 3o7q_A 355 TLCSAFMSIQ-YPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFAR 430 (438)
T ss_dssp HHHHHHHTTH-HHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHH-HHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHH
Confidence 4445554433 345567777889876 888888877 677999999999999999988 76666665555544444333
No 4
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=100.00 E-value=6.7e-32 Score=268.39 Aligned_cols=392 Identities=15% Similarity=0.094 Sum_probs=253.2
Q ss_pred CCccccCcchhHHHHHHHHHHHHHHHHhhhhhhhh-hchhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhc
Q 010375 75 NNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRD-YGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFG 153 (512)
Q Consensus 75 ~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr-~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~ 153 (512)
++|+|++..+.+++.+.+.++..++++++|+++|| +|||+++..+.++.+++.+++++++|++.++++|+++|++.+..
T Consensus 46 ~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~ 125 (491)
T 4aps_A 46 TGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIMLGHIVLALPFGASALFGSIILIIIGTGFL 125 (491)
T ss_dssp HTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHHHHHHHSCCSTTHHHHHHHHHHHHHHHH
T ss_pred hhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHhc
Confidence 45679999999999999999999999999999999 89999999999999999999999999999999999999999999
Q ss_pred cchhhhhhhhcCCCCC--chhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHhhHHHHHHHHHHhhcc-CC----
Q 010375 154 NQAVPLYLSEMAPTHL--RGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL-PE---- 226 (512)
Q Consensus 154 ~~~~~~~i~~~~~~~~--r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~-~e---- 226 (512)
.+...++++|++|+++ |++++++++.+.++|..++|.+ .....+..+||+.|++.++..++..+..++. |+
T Consensus 126 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~--~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~~ 203 (491)
T 4aps_A 126 KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLI--VGAAQEAAGYHVAFSLAAIGMFIGLLVYYFGGKKTLDP 203 (491)
T ss_dssp HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCCS
T ss_pred cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHH--HHHHHhhhhHHHHHHHHHHHHHHHHHHHHHhCcccccc
Confidence 9999999999999988 6778888999999999999999 4555556789999999877776665554332 21
Q ss_pred ChhHHHHcCCHHHHHHHHHH----------------HcCCchhhHHHHHHHH---------HHHhhcccCcccHHHhccc
Q 010375 227 TPNSLIERGKKVEGRRVLEK----------------IRGTKEVNAEYQDMVD---------ASELANSIKHPFRNILERR 281 (512)
Q Consensus 227 ~p~~l~~~~~~~~~~~~~~~----------------~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~ 281 (512)
..+...++.+.++.++..+. ..+..+.+........ .....++.+.+.. .+++
T Consensus 204 ~~~~~~~~~~~~~~~~~~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~ 281 (491)
T 4aps_A 204 HYLRPTDPLAPEEVKPLLVKVSLAVAGFIAIIVVMNLVGWNSLPAYINLLTIVAIAIPVFYFAWMISSVKVTST--EHLR 281 (491)
T ss_dssp CCSCCSCCCSHHHHHHHHHHCCCCCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHHHC--------------
T ss_pred cccCCCCccccchhHHHHHHHHHHHHHHHHHHHHHHhccCcccccchhhhhHHHHHHHHHHHHHHhhcccccHH--HHHH
Confidence 10000111223333332221 1111111110000000 0000000000000 0111
Q ss_pred chhHHHHHHHHHHHHHhhchhHHHhhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHH-----H
Q 010375 282 NRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLI-----S 355 (512)
Q Consensus 282 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~-----~ 355 (512)
... .....+..+.....+.....+.|.+.++ .+.+....+.......+..+++.++.+++.||++||+... .
T Consensus 282 ~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~r~~~r~~~~~~~~~~ 359 (491)
T 4aps_A 282 VVS--YIPLFIAAVLFWAIEEQGSVVLATFAAERVDSSWFPVSWFQSLNPLFIMLYTPFFAWLWTAWKKNQPSSPTKFAV 359 (491)
T ss_dssp CTT--HHHHHHHHHHHHHHHGGGGTHHHHHHHHSCCCSSSCSGGGTTHHHHHHHHHHHHHHHHHHHTTTC---CHHHHHH
T ss_pred HHH--HHHHHHHHHHHHHHHhhccHHHHHHHHHHhccCccCHHHHhccchHHHHHHHHHHHHHHHHHhccCCCchHHHHH
Confidence 111 1222222222233334455566767666 6777677788888889999999999999999999986554 5
Q ss_pred hhHHHHHHHHHHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhhhcccceeeeeecccCChhhhhhHHHHHHHHHHHH
Q 010375 356 GGIQMITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFF 435 (512)
Q Consensus 356 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g 435 (512)
+..+..+++.++........ . ......+.......+.+.+.+.. .+..+.++.|.+|++.|+++.|+.+....+|
T Consensus 360 ~~~~~~~~~~~~~~~~~~~~-~---~~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g 434 (491)
T 4aps_A 360 GLMFAGLSFLLMAIPGALYG-T---SGKVSPLWLVGSWALVILGEMLI-SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVG 434 (491)
T ss_dssp HHHHHHHHHTTTHHHHHHCC-C---CTTCCTHHHHHHHHHHHHHHHTT-TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcC-C---CCCccHHHHHHHHHHHHHHHHHH-hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence 55555555544444321110 0 01112334444455555555433 4445678899999999999999999999999
Q ss_pred HHHHHHHHHHHHhhcchhhHHHHHHHHHHHHHHHhhccccCC
Q 010375 436 TFVIAQIFLTLLCSFKFGIFLFFAGWVTIMTIFVYFFLPETK 477 (512)
Q Consensus 436 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~ 477 (512)
..+++.+.+.+.+......+...++++.+..++.++..++.+
T Consensus 435 ~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 476 (491)
T 4aps_A 435 SALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRIQ 476 (491)
T ss_dssp HHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC-----
T ss_pred HHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999998876654444455555555555555555544433
No 5
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=100.00 E-value=1.7e-34 Score=276.81 Aligned_cols=360 Identities=13% Similarity=0.131 Sum_probs=266.7
Q ss_pred HHHHHhhhhhhhccccccccccHHHHHHhhhhhhhhhcccccCCccccCcchhHHHHHHHHHHHHHHHHhhhhhhhhhch
Q 010375 33 VAAIGGSIFGYDIGISGGVTSMDAFLKKFFHDVYLKKKHAHENNYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGR 112 (512)
Q Consensus 33 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Gr 112 (512)
+++++.+..+++...+.+. +|.+.+ ++|.+..+.+++.+.+.++..++++++|+++||+||
T Consensus 4 ~~~~~~~~~~~~~~~~~~~--~~~~~~-----------------~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~ 64 (375)
T 2gfp_A 4 MLVLLVAVGQMAQTIYIPA--IADMAR-----------------DLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGR 64 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHH--HHHHHT-----------------TSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCC
T ss_pred HHHHHHHHHHHHHHHHhhh--hHHHHH-----------------HcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCC
Confidence 3455566666777666554 444433 448999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhccchhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010375 113 RASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMIN 192 (512)
Q Consensus 113 r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~ 192 (512)
|+++..+.++.+++.++++++++++.+++.|++.|++.+...+...+++.|++|+++|++++++...+..+|..++|.+
T Consensus 65 r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~- 143 (375)
T 2gfp_A 65 RPVILVGMSIFMLATLVAVTTSSLTVLIAASAMQGMGTGVGGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLI- 143 (375)
T ss_dssp CCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHH-
T ss_pred chhHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHhhhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHH-
Confidence 9999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhcccCCCchhHHHHhhHHHHHHHHHH-hhccCCChhHHHHcCCHHHHHHHHHHHcCCchhhHHHHHHHHHHHhhcccC
Q 010375 193 YGTQKLETWGWRLSLGLAAAPALMMTVG-GILLPETPNSLIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIK 271 (512)
Q Consensus 193 ~~~~~~~~~~Wr~~f~~~~~~~~~~~~~-~~~~~e~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
.....+..+||+.|++.++..++..+. .+++||++++. + ++++.+
T Consensus 144 -~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~------------------------------~~~~~~ 189 (375)
T 2gfp_A 144 -GGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPVD---A------------------------------PRTRLL 189 (375)
T ss_dssp -HHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTTT---C------------------------------CCCCTT
T ss_pred -HHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCCC---c------------------------------ccccHH
Confidence 566666679999999988888777663 44578876310 0 001123
Q ss_pred cccHHHhcccchhHHHHHHHHHHHHHhhchhHHHhhHHHHHHh-cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCCh
Q 010375 272 HPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPVLFQS-MGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRR 350 (512)
Q Consensus 272 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r 350 (512)
.++++.++++. ++...+..+...........+.|.+.++ +|.++.+.+.......++.+++.++.+++.||.+++
T Consensus 190 ~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~l~~r~~~~ 265 (375)
T 2gfp_A 190 TSYKTLFGNSG----FNCYLLMLIGGLAGIAAFEACSGVLMGAVLGLSSMTVSILFILPIPAAFFGAWFAGRPNKRFSTL 265 (375)
T ss_dssp TCSTHHHHHHH----HHHHHHHHHHHHHHHHHHHHHCSCSSHHHHHHHHHHHHHHHHTHHHHHHHHHHHHHTTTTHHHHH
T ss_pred HHHHHHhcCcc----hHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34555555444 2333333333444455666677777666 788888999999999999999999999999998773
Q ss_pred hHHHHhhHH-HHHHHHHHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhhhcccceeeeeecccCChhhhhhHHHHHH
Q 010375 351 ALLISGGIQ-MITCQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITV 429 (512)
Q Consensus 351 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~ 429 (512)
...+... ...+...+..... ..+..+.......+.+.+.+.. .+....+..|..| ++|+++.|+.+
T Consensus 266 --~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~p-~~~g~~~g~~~ 332 (375)
T 2gfp_A 266 --MWQSVICCLLAGLLMWIPDWF---------GVMNVWTLLVPAALFFFGAGML-FPLATSGAMEPFP-FLAGTAGALVG 332 (375)
T ss_dssp --HHHHHHHHHHTSSSSSHHHHH---------HHHHHHHHHHHHHHHHHHHHHT-SSTTHHHHHTHHH-HHHHHHHHHHH
T ss_pred --HHHHHHHHHHHHHHHHHHhhh---------ccccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHhCC-cccchHHHHHH
Confidence 2222222 2222211111110 0112333444555555555544 3444677889998 89999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHH
Q 010375 430 AVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVT 463 (512)
Q Consensus 430 ~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~ 463 (512)
....+|..++|.+.+.+.+..++...+.+.++..
T Consensus 333 ~~~~~g~~~~~~~~g~l~~~~~~~~~~~~~~~~~ 366 (375)
T 2gfp_A 333 GLQNIGSGVLASLSAMLPQTGQGSLGLLMTLMGL 366 (375)
T ss_dssp HHHHHHHHCCSTTCTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhcCCcccHHHHHHHHHH
Confidence 9999999999999999988777766665544433
No 6
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.96 E-value=2.8e-28 Score=244.37 Aligned_cols=142 Identities=15% Similarity=0.205 Sum_probs=129.3
Q ss_pred cCcchhHHHHHHHHHHHHHHHHhhhhhhhhh-chhHHHHHHHHHHHHHHHHHHhhc-hHHHHHHHHHHHhhhhhhccchh
Q 010375 80 YDNQGLAAFTSSLYLAGLVASFVASPVTRDY-GRRASIICGGISFLLGAALNAAAA-NLAMLLTGRILLGVGIGFGNQAV 157 (512)
Q Consensus 80 ~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~-Grr~~l~~~~~~~~~~~~~~~~~~-~~~~l~~~r~l~G~~~~~~~~~~ 157 (512)
++..+.+++.+.+.++..++++++|+++||+ |||+++..+.++.+++.+++++++ +++.+++.|++.|++.+...+..
T Consensus 51 ~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~ 130 (524)
T 2xut_A 51 LRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLAIFEHSVQGFYTGLFLIALGSGGIKPLV 130 (524)
T ss_dssp TTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHHHHTTHHHH
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHhccccchhH
Confidence 8999999999999999999999999999999 999999999999999999999999 99999999999999999999999
Q ss_pred hhhhhhcCCCCCchhHHHH---HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHhhHHHHHHHHHHhhc
Q 010375 158 PLYLSEMAPTHLRGGLNMM---FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL 223 (512)
Q Consensus 158 ~~~i~~~~~~~~r~~~~~~---~~~~~~lG~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~ 223 (512)
.+++.|++|+++|+++.+. ...+.++|.+++|.+ .....+..+||+.|++.++..++..+..++
T Consensus 131 ~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~--~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 131 SSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLS--MPLLLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHT--STHHHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHH--HHHHhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999876666 889999999999998 555556679999999988887766655544
No 7
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.95 E-value=1.9e-27 Score=230.66 Aligned_cols=356 Identities=12% Similarity=0.049 Sum_probs=215.6
Q ss_pred ccccCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHH---HHHHhhchH-HHHHHHHHHHhhhhhh
Q 010375 77 YCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGA---ALNAAAANL-AMLLTGRILLGVGIGF 152 (512)
Q Consensus 77 ~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~---~~~~~~~~~-~~l~~~r~l~G~~~~~ 152 (512)
++|++..+.|++.+.+.++..++++++|+++||+|||++++.+..+++++. ..+.+++.. ..++..+++.|++.+.
T Consensus 37 ~~g~s~~~~g~~~~~~~~~~~i~~~~~G~lsDr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 116 (417)
T 2cfq_A 37 INHISKSDTGIIFAAISLFSLLFQPLFGLLSDKLGLRKYLLWIITGMLVMFAPFFIFIFGPLLQYNILVGSIVGGIYLGF 116 (417)
T ss_dssp TTCCCTTTSHHHHHHHHHHHHHHHHHHHHHHTTSTTCCHHHHHHHHTTSCHHHHHHHTHHHHHHTTCCHHHHGGGSSTTH
T ss_pred HhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 348899999999999999999999999999999999999999888775532 222333222 1234566777766665
Q ss_pred ccchhhhhhhhcCCC--CCchhHHHHHHHHHHHHHHHHHHHHHhhcccCCCchhHHHHhhHHHHHHHHHHhhccCCChhH
Q 010375 153 GNQAVPLYLSEMAPT--HLRGGLNMMFQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILLPETPNS 230 (512)
Q Consensus 153 ~~~~~~~~i~~~~~~--~~r~~~~~~~~~~~~lG~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~~e~p~~ 230 (512)
..+.....+.++.++ ++|+...+.......+|..++|.++ ....+ .+||+.|++.++..++..+..++.+|+++.
T Consensus 117 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~l~--~~l~~-~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~ 193 (417)
T 2cfq_A 117 CFNAGAPAVEAFIEKVSRRSNFEFGRARMFGCVGWALGASIV--GIMFT-INNQFVFWLGSGCALILAVLLFFAKTDAPS 193 (417)
T ss_dssp HHHTTHHHHHHHHHHHHHHHTCCHHHHSSSTTTHHHHHHHHH--HHHHH-HCSHHHHTTTTTTTTTHHHHSCSSCCCCSC
T ss_pred HHhhhHHHHHHHHHHhhhhcccchHHHHHHHHHHHHHHHHHH--HHHHH-hchhHHHHHHHHHHHHHHHHHHHcCccccc
Confidence 554444555555433 3456677777777888888998884 33323 479999998877765555555554443310
Q ss_pred HHHcCCHHHHHHHHHHHcCCchhhHHHHHHHHHHHhhcccCcccHHHhcccchhHHHHHHHHHHHHHhhchhHHHhhHHH
Q 010375 231 LIERGKKVEGRRVLEKIRGTKEVNAEYQDMVDASELANSIKHPFRNILERRNRPQLVMAIFMPMFQILTGINSILFYAPV 310 (512)
Q Consensus 231 l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 310 (512)
+.+.++ ..+ .+.++....+++++++++..+. ..+..+.....+.....+.|.
T Consensus 194 ---~~~~~~----------~~~-----------~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~ 245 (417)
T 2cfq_A 194 ---SATVAN----------AVG-----------ANHSAFSLKLALELFRQPKLWF----LSLYVIGVSCTYDVFDQQFAN 245 (417)
T ss_dssp ---SSCSSS----------SSS-----------SCCCCCCHHHHHHHTTCHHHHH----HHHHHHHHHHHHHHHHHHHHH
T ss_pred ---cccccc----------ccc-----------cccccccHHHHHHHhcCCchhh----HHHHHHHHHHHHHHHHHHHHH
Confidence 000000 000 0000000011233444333222 222222222223334445666
Q ss_pred HHHh-cCC---CCchhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHhhccCCCcccccchh
Q 010375 311 LFQS-MGF---KGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILGLKFGPNQELSKSFS 386 (512)
Q Consensus 311 ~~~~-~g~---~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 386 (512)
++.+ ++. +....+.......++.+++.++.++++||++||+.+..+..+..++...+... +..
T Consensus 246 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~-------------~~~ 312 (417)
T 2cfq_A 246 FFTSFFATGEQGTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFA-------------TSA 312 (417)
T ss_dssp HHHHTSSSHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTC-------------CSH
T ss_pred HHHHHHhccCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHh-------------ccH
Confidence 6554 331 23445677777778888999999999999999998887766655544333211 112
Q ss_pred hHHHHHHHHHHHHhhhcccceeeeeecccCChhhhhhHHHHH-HHHHHHHHHHHHHHHHHHHhhcchhhHHHHHHHHHHH
Q 010375 387 ILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSIT-VAVNLFFTFVIAQIFLTLLCSFKFGIFLFFAGWVTIM 465 (512)
Q Consensus 387 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~-~~~~~~g~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~ 465 (512)
+..+....+.+.+.... .+..+.+.+|.+|++.|+++.+.. +....+|++++|.+.|.+.+..++...+.+.+++.++
T Consensus 313 ~~~~~~~~l~~~~~~~~-~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~ 391 (417)
T 2cfq_A 313 LEVVILKTLHMFEVPFL-LVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALG 391 (417)
T ss_dssp HHHHHHTTHHHHHHHHH-HHHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH-HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHH
Confidence 22333333333333222 222356888999999999999994 7888899999999999999988866655555554444
Q ss_pred HHHH-hhccccCC
Q 010375 466 TIFV-YFFLPETK 477 (512)
Q Consensus 466 ~~~~-~~~~~~~~ 477 (512)
+.+. +...+|++
T Consensus 392 ~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 392 FTLISVFTLSGPG 404 (417)
T ss_dssp HHHHHTTSSCCSC
T ss_pred HHHHHHhhhcCCC
Confidence 4443 34444433
No 8
>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*
Probab=99.42 E-value=1e-12 Score=128.09 Aligned_cols=154 Identities=10% Similarity=-0.021 Sum_probs=120.1
Q ss_pred HHHHHHHHHHHhhchhHHHhhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHH
Q 010375 287 VMAIFMPMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVI 366 (512)
Q Consensus 287 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~ 366 (512)
+....+..+.............|.+.+++|.+..+.++..+...++..++.++.|+++||+|||+.+..+.++..++.++
T Consensus 28 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~i~~~~~G~l~dr~g~r~~l~~~~~~~~~~~~~ 107 (438)
T 3o7q_A 28 FALLCSLFFLWAVANNLNDILLPQFQQAFTLTNFQAGLIQSAFYFGYFIIPIPAGILMKKLSYKAGIITGLFLYALGAAL 107 (438)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHSCCCSHHHHHHHHHHHHHHHTTHHHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHhHHHHHHHhcchHHHHHHHHHHHHHHHH
Confidence 33444444444445566777788888889999999999999999999999999999999999999999999888888777
Q ss_pred HHHHHhhccCCCcccccchhhHHHHHHHHHHHHhhhcccceeeeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Q 010375 367 VSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTL 446 (512)
Q Consensus 367 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~ 446 (512)
...... .++.+..++..++.+.+.+... +....++.|.+|+++|+.+.++.+....+|..++|.+.+.+
T Consensus 108 ~~~~~~----------~~~~~~l~~~~~l~G~~~~~~~-~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l 176 (438)
T 3o7q_A 108 FWPAAE----------IMNYTLFLVGLFIIAAGLGCLE-TAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSL 176 (438)
T ss_dssp HHHHHH----------TTCHHHHHHHHHHHHHHHHHHH-HHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHH
T ss_pred HHhccc----------cccHHHHHHHHHHHHhhHHHhh-hhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 633211 1224445555566666666443 34467889999999999999999999999999999999998
Q ss_pred H-hhcc
Q 010375 447 L-CSFK 451 (512)
Q Consensus 447 ~-~~~g 451 (512)
. +..+
T Consensus 177 ~~~~~~ 182 (438)
T 3o7q_A 177 ILSNVP 182 (438)
T ss_dssp HHTSSC
T ss_pred Hhcccc
Confidence 8 4443
No 9
>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1
Probab=99.38 E-value=4.4e-12 Score=124.01 Aligned_cols=147 Identities=14% Similarity=0.117 Sum_probs=126.8
Q ss_pred CccccCcchhHHHHHHHHHHHHHHHHhhhhhhhhh--chhHHHHHHHHHHH-HHHHHHHhh--chHHHHHHHHHHHhhhh
Q 010375 76 NYCKYDNQGLAAFTSSLYLAGLVASFVASPVTRDY--GRRASIICGGISFL-LGAALNAAA--ANLAMLLTGRILLGVGI 150 (512)
Q Consensus 76 ~~~~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~--Grr~~l~~~~~~~~-~~~~~~~~~--~~~~~l~~~r~l~G~~~ 150 (512)
+.+|.+..+.+++.+...++..++.++.|++.||+ |||+.+..+..+.. ++.++..+. .+.+.+.+..++.|++.
T Consensus 281 ~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 360 (451)
T 1pw4_A 281 EVKHFALDKSSWAYFLYEYAGIPGTLLCGWMSDKVFRGNRGATGVFFMTLVTIATIVYWMNPAGNPTVDMICMIVIGFLI 360 (451)
T ss_dssp TBSCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHHHHHHHHTTSCCTTCHHHHHHHHHHHHHHH
T ss_pred HhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHH
Confidence 33588999999999999999999999999999999 99999888877776 666666666 36778888889999998
Q ss_pred hhccchhhhhhhhcCCCCCchhHHHHHHHHHHH-HHHHHHHHHHhhcccCCCchhHHHHhhHHHHHHHHHHhhcc
Q 010375 151 GFGNQAVPLYLSEMAPTHLRGGLNMMFQLATTL-GIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGILL 224 (512)
Q Consensus 151 ~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~l-G~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~~ 224 (512)
+...+....++.|.+|+++|++++++......+ |..++|.+ .+...+..+|+..|++.++..++..++.+++
T Consensus 361 ~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~--~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~ 433 (451)
T 1pw4_A 361 YGPVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAI--VGYTVDFFGWDGGFMVMIGGSILAVILLIVV 433 (451)
T ss_dssp THHHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHSSCSHHHHHHHHHHHHHHHHHHHHH
T ss_pred hchHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHH--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHHH
Confidence 888888899999999999999999999999999 99999999 5566666789999999888887776666554
No 10
>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*
Probab=99.35 E-value=1.4e-12 Score=126.07 Aligned_cols=146 Identities=12% Similarity=0.125 Sum_probs=121.9
Q ss_pred CcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHhhhhhhccchhhhh
Q 010375 81 DNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAAANLAMLLTGRILLGVGIGFGNQAVPLY 160 (512)
Q Consensus 81 s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~ 160 (512)
+....+++.+...++..++.++.|+++||+|||+++..+.++.+++.++.++.++.+.+++..++.+++.+...+....+
T Consensus 257 ~~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~ 336 (417)
T 2cfq_A 257 GTRVFGYVTTMGELLNASIMFFAPLIINRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKY 336 (417)
T ss_dssp HTHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHTTCCSHHHHHHHTTHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45567888888889999999999999999999999999998888888888888888888888888888877777777889
Q ss_pred hhhcCCCCCchhHHHH-HHHHHHHHHHHHHHHHHhhcccCCCchhHHHHhhHHHHHHHHHHhhc-cCCCh
Q 010375 161 LSEMAPTHLRGGLNMM-FQLATTLGIFTANMINYGTQKLETWGWRLSLGLAAAPALMMTVGGIL-LPETP 228 (512)
Q Consensus 161 i~~~~~~~~r~~~~~~-~~~~~~lG~~~~~~~~~~~~~~~~~~Wr~~f~~~~~~~~~~~~~~~~-~~e~p 228 (512)
+.|.+|++.|+++.++ ++....+|..++|.+ .+...+..+++..|.+.++++++..++.++ .||.+
T Consensus 337 ~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l--~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~ 404 (417)
T 2cfq_A 337 ITSQFEVRFSATIYLVCFCFFKQLAMIFMSVL--AGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPG 404 (417)
T ss_dssp HHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHH--HHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSC
T ss_pred HHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhh--HHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCC
Confidence 9999999999999998 477888999999999 455555668889999888888777666544 56654
No 11
>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}
Probab=99.33 E-value=3.4e-12 Score=126.34 Aligned_cols=168 Identities=15% Similarity=0.161 Sum_probs=123.4
Q ss_pred HHHHHHHHhhchhHHHhhHHHHHH-h-----cCCCCchhhHHHHHHHHHHHHHHHHHHHHHhh-cCChhHHHHhhHHHHH
Q 010375 290 IFMPMFQILTGINSILFYAPVLFQ-S-----MGFKGDASLYSSAMTGAVLASSTLISIATVDK-LGRRALLISGGIQMIT 362 (512)
Q Consensus 290 ~~~~~~~~~~~~~~~~~~~~~~~~-~-----~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~-~~~r~~~~~~~~~~~~ 362 (512)
.....+.....++....+.+.+++ . +|.+..+.++..+...++..++.++.|+++|| +|||+.+..+.++..+
T Consensus 18 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~~~~~~~~~~~~~~~g~l~dr~~g~r~~~~~~~~~~~~ 97 (491)
T 4aps_A 18 LFMTEMWERFSYYGMRAILLYYMWFLISTGDLHITRATAASIMAIYASMVYLSGTIGGFVADRIIGARPAVFWGGVLIML 97 (491)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccchhhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHH
Confidence 333444444445555555555554 4 89999999999999999999999999999999 8999999998887777
Q ss_pred HHHHHHHHHhhccCCCcccccchhhHHHHHHHHHHHHhhhcccceeeeeecccCChhh--hhhHHHHHHHHHHHHHHHHH
Q 010375 363 CQVIVSIILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLET--RSAGQSITVAVNLFFTFVIA 440 (512)
Q Consensus 363 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~--~~~~~g~~~~~~~~g~~~~~ 440 (512)
+.++.... ++.+..++..++.+.+.+.. .+....++.|.+|+++ |+.+.++.+....+|..++|
T Consensus 98 ~~~~~~~~-------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~ 163 (491)
T 4aps_A 98 GHIVLALP-------------FGASALFGSIILIIIGTGFL-KPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAP 163 (491)
T ss_dssp HHHHHHSC-------------CSTTHHHHHHHHHHHHHHHH-HHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHh-------------hhHHHHHHHHHHHHHHHHhc-cchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHH
Confidence 76655432 22344455555556555543 3444678889999988 77888889999999999999
Q ss_pred HHHHHHHhhcchhhHHHHHHHHHHHHHHHhh
Q 010375 441 QIFLTLLCSFKFGIFLFFAGWVTIMTIFVYF 471 (512)
Q Consensus 441 ~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~ 471 (512)
.+.+.+.+..++...+...++..+.+.+...
T Consensus 164 ~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~ 194 (491)
T 4aps_A 164 LIVGAAQEAAGYHVAFSLAAIGMFIGLLVYY 194 (491)
T ss_dssp HHHHHHHHHSCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHHHHHHHHH
Confidence 9999999988887766666555554444433
No 12
>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}
Probab=99.31 E-value=4.9e-12 Score=120.47 Aligned_cols=171 Identities=12% Similarity=0.097 Sum_probs=127.9
Q ss_pred HHHHHhhchhHHHhhHHHHHHhcCCCCchhhHHHHHHHHHHHHHHHHHHHHHhhcCChhHHHHhhHHHHHHHHHHHHHHh
Q 010375 293 PMFQILTGINSILFYAPVLFQSMGFKGDASLYSSAMTGAVLASSTLISIATVDKLGRRALLISGGIQMITCQVIVSIILG 372 (512)
Q Consensus 293 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~~~r~~~~~~~~~~~~~~~~~~~~~~ 372 (512)
..+.............|.+.+++|.++.+.++..+...++..++.++.|+++||+|||+.+..+..+..++..+.....
T Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~g~s~~~~g~~~~~~~~~~~~~~~~~g~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~- 86 (375)
T 2gfp_A 8 LVAVGQMAQTIYIPAIADMARDLNVREGAVQSVMGAYLLTYGVSQLFYGPISDRVGRRPVILVGMSIFMLATLVAVTTS- 86 (375)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTTSSSTTHHHHHHHHHHHHHHHHHHTTHHHHHTTSCCCCCCHHHHHHHHHHHHHHHHHH-
T ss_pred HHHHHHHHHHHHhhhhHHHHHHcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHHhc-
Confidence 3333444455566667878888999999999999999999999999999999999999999998888888777666542
Q ss_pred hccCCCcccccchhhHHHHHHHHHHHHhhhcccceeeeeecccCChhhhhhHHHHHHHHHHHHHHHHHHHHHHHHhhcch
Q 010375 373 LKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSITVAVNLFFTFVIAQIFLTLLCSFKF 452 (512)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~~~~~~~~g~~~~~~~~~~~~~~~g~ 452 (512)
+.+..+....+.+.+.+. ..+....++.|.+|+++|+++.+..+....+|..++|.+.+.+.+..++
T Consensus 87 ------------~~~~l~~~~~l~g~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~ 153 (375)
T 2gfp_A 87 ------------SLTVLIAASAMQGMGTGV-GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNW 153 (375)
T ss_dssp ------------HHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHH
T ss_pred ------------cHHHHHHHHHHHHHHHHh-hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccH
Confidence 233444444455555443 3344467888999999999999999999999999999999998887777
Q ss_pred hhHHHHHHHHHHHHHH-HhhccccCC
Q 010375 453 GIFLFFAGWVTIMTIF-VYFFLPETK 477 (512)
Q Consensus 453 ~~~~~~~~~~~~~~~~-~~~~~~~~~ 477 (512)
...+.+.++..+...+ ..+..||++
T Consensus 154 ~~~~~~~~~~~~~~~~~~~~~~~~~~ 179 (375)
T 2gfp_A 154 RACYLFLLVLCAGVTFSMARWMPETR 179 (375)
T ss_dssp HHHHHHHHHHHHHHHCCCCCSSCCCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHCcccC
Confidence 6666555544444443 444555543
No 13
>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}
Probab=99.31 E-value=2.3e-11 Score=121.39 Aligned_cols=163 Identities=12% Similarity=0.053 Sum_probs=119.7
Q ss_pred HhhchhHHHhhHHHHHH-hcC------CCCchhhHHHHHHHHHHHHHHHHHHHHHhhc-CChhHHHHhhHHHHHHHHHHH
Q 010375 297 ILTGINSILFYAPVLFQ-SMG------FKGDASLYSSAMTGAVLASSTLISIATVDKL-GRRALLISGGIQMITCQVIVS 368 (512)
Q Consensus 297 ~~~~~~~~~~~~~~~~~-~~g------~~~~~~~~~~~~~~~~~~~~~~~~g~l~d~~-~~r~~~~~~~~~~~~~~~~~~ 368 (512)
....++....+.+.++. ++| +++.+.++..+...++..++.++.|+++||+ |||+.+..+.++..++.++..
T Consensus 24 ~~~~~~~~~~~l~~~l~~~~~~~~~~~~s~~~~g~~~~~~~~~~~~~~~~~G~l~dr~~g~r~~~~~~~~~~~~~~~~~~ 103 (524)
T 2xut_A 24 ERFSFYGMRNILTPFLMTALLLSIPEELRGAVAKDVFHSFVIGVYFFPLLGGWIADRFFGKYNTILWLSLIYCVGHAFLA 103 (524)
T ss_dssp HHHHHHHHHHHHHHHHHHSCSSCCSSSTTTTTHHHHHHHHHHHHHHTHHHHHHHHTTSSCSHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhccccccccCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence 33344555566666654 488 9999999999999999999999999999999 999999988887777766655
Q ss_pred HHHhhccCCCcccccchhhHHHHHHHHHHHHhhhcccceeeeeecccCChhhhhhHHHH---HHHHHHHHHHHHHHHHHH
Q 010375 369 IILGLKFGPNQELSKSFSILVVVVICLFVLAFGWSWGPLGWTVPSEIFPLETRSAGQSI---TVAVNLFFTFVIAQIFLT 445 (512)
Q Consensus 369 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~g~---~~~~~~~g~~~~~~~~~~ 445 (512)
... ...+..+...++.+.+.+.. .+...+++.|.+|+++|+++.+. .+....+|..++|.+.+.
T Consensus 104 ~~~------------~~~~~~~~~~~l~g~~~~~~-~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~ 170 (524)
T 2xut_A 104 IFE------------HSVQGFYTGLFLIALGSGGI-KPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPL 170 (524)
T ss_dssp HTS------------SCHHHHHHHHHHHHHHHHTT-HHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTH
T ss_pred Hhc------------ccHHHHHHHHHHHHHhcccc-chhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 421 12344445555555555533 34446788999999999776666 888899999999999999
Q ss_pred HHhhcchhhHHHHHHHHHHHHHHHhhc
Q 010375 446 LLCSFKFGIFLFFAGWVTIMTIFVYFF 472 (512)
Q Consensus 446 ~~~~~g~~~~~~~~~~~~~~~~~~~~~ 472 (512)
+.+..++...+.+.++..+...+....
T Consensus 171 l~~~~g~~~~f~~~~~~~~~~~~~~~~ 197 (524)
T 2xut_A 171 LLKNFGAAVAFGIPGVLMFVATVFFWL 197 (524)
T ss_dssp HHHTSCHHHHHHHHHHHHHHHHHHHHS
T ss_pred HhccccHHHHHHHHHHHHHHHHHHHHH
Confidence 998888776666655555544444433
No 14
>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*
Probab=99.14 E-value=6.6e-10 Score=109.79 Aligned_cols=150 Identities=15% Similarity=0.091 Sum_probs=104.7
Q ss_pred ccCcchhHHHHHHHHHHHHHHHHhhhhhhhhhchhHHHHHHHHHHHHHHHHHHhh-----chHHHHHHHHHHHhhhhhhc
Q 010375 79 KYDNQGLAAFTSSLYLAGLVASFVASPVTRDYGRRASIICGGISFLLGAALNAAA-----ANLAMLLTGRILLGVGIGFG 153 (512)
Q Consensus 79 ~~s~~~~g~~~s~~~l~~~i~~~~~g~l~dr~Grr~~l~~~~~~~~~~~~~~~~~-----~~~~~l~~~r~l~G~~~~~~ 153 (512)
+.+............+...++.++.+++.||+|||+.++.+.....++.+..+.. ++...++..-+..+......
T Consensus 308 ~~~~~~~~~~~~~~~~~~~~~~~~~~~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 387 (491)
T 4gc0_A 308 GASTDIALLQTIIVGVINLTFTVLAIMTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSW 387 (491)
T ss_dssp SCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTT
T ss_pred CCCccchhhHHHHHHHHHHHHHHHHHHHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHH
Confidence 4456666667777788889999999999999999999999888888777765543 12222222222222222234
Q ss_pred cchhhhhhhhcCCCCCchhHHHHHHHHHHHHHHHHHHHHHhhc----ccCCCchhHHHHhhHHHHHHHHHHh-hccCCCh
Q 010375 154 NQAVPLYLSEMAPTHLRGGLNMMFQLATTLGIFTANMINYGTQ----KLETWGWRLSLGLAAAPALMMTVGG-ILLPETP 228 (512)
Q Consensus 154 ~~~~~~~i~~~~~~~~r~~~~~~~~~~~~lG~~~~~~~~~~~~----~~~~~~Wr~~f~~~~~~~~~~~~~~-~~~~e~p 228 (512)
.+....+.+|.+|.+.|++++++......+|..+++.+..... .....++.+.|++.++++++..+.. +++|||.
T Consensus 388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PETk 467 (491)
T 4gc0_A 388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK 467 (491)
T ss_dssp THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCCT
T ss_pred HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCCC
Confidence 4667789999999999999999999998898888876621111 1112345667888888887776655 5589985
No 15
>2g9p_A Antimicrobial peptide latarcin 2A; helix-hinge-helix, antimicrobial protein; NMR {Synthetic}
Probab=58.62 E-value=4.4 Score=19.38 Aligned_cols=14 Identities=21% Similarity=0.558 Sum_probs=11.3
Q ss_pred hhhhhhhhhchhHH
Q 010375 102 VASPVTRDYGRRAS 115 (512)
Q Consensus 102 ~~g~l~dr~Grr~~ 115 (512)
++|.+..+||||.+
T Consensus 2 lfgklikkfgrkai 15 (26)
T 2g9p_A 2 LFGKLIKKFGRKAI 15 (26)
T ss_dssp HHHHHHHHHTSHHH
T ss_pred cHHHHHHHHhHHHH
Confidence 46788999999865
No 16
>3arc_T Photosystem II reaction center protein T; PSII, membrane-protein complex, transmembrane alpha-helix, E transport, photosynthesis; HET: OEX CLA PHO BCR PL9 SQD LMG UNL LMT HTG DGD LHG HEM; 1.90A {Thermosynechococcus vulcanus} PDB: 1s5l_T* 2axt_T* 3bz1_T* 3bz2_T* 3kzi_T* 3prq_T* 3prr_T* 3a0b_T* 3a0h_T*
Probab=24.38 E-value=87 Score=16.74 Aligned_cols=11 Identities=27% Similarity=0.428 Sum_probs=6.8
Q ss_pred HHhhccCCChh
Q 010375 219 VGGILLPETPN 229 (512)
Q Consensus 219 ~~~~~~~e~p~ 229 (512)
....+++|+|+
T Consensus 18 FFAI~FRePPr 28 (32)
T 3arc_T 18 FFAIFFREPPR 28 (32)
T ss_dssp HHHHHTSCCCC
T ss_pred HHhhhhcCCCC
Confidence 34455788874
No 17
>4dve_A Biotin transporter BIOY; ECF-transport, ligand-binding domain, biotin binding, membra transport protein; HET: BTN BNG; 2.09A {Lactococcus lactis subsp}
Probab=22.16 E-value=1.6e+02 Score=24.02 Aligned_cols=25 Identities=12% Similarity=0.131 Sum_probs=18.6
Q ss_pred HHHHHHHHHHHHHhhhhhhhhhchh
Q 010375 89 TSSLYLAGLVASFVASPVTRDYGRR 113 (512)
Q Consensus 89 ~s~~~l~~~i~~~~~g~l~dr~Grr 113 (512)
+.-|.+|..++..+.|++.||..++
T Consensus 99 TgGYLiGF~~aA~v~G~l~~~~~~~ 123 (198)
T 4dve_A 99 SGGYRIAWLFTPFLIGFFLKKLKIT 123 (198)
T ss_dssp THHHHHHHHHHHHHHHHHHHHTTGG
T ss_pred hhHHHHHHHHHHHHHHHHHHHcccc
Confidence 3457778888888888888887543
Done!