BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010376
         (512 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|3IZ6|S Chain S, Localization Of The Small Subunit Ribosomal Proteins Into
           A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
           Ribosome
          Length = 146

 Score = 31.2 bits (69), Expect = 1.4,   Method: Composition-based stats.
 Identities = 15/46 (32%), Positives = 24/46 (52%), Gaps = 1/46 (2%)

Query: 206 FSQIPDFDQVWWLSIVAAIMSFTYSTAGLGL-GIGKVAGNRSFKGS 250
           F ++P +D  W+ +  A+I    Y   G+G+ G  K+ G R   GS
Sbjct: 45  FKELPPYDPDWYYTRAASIARKIYLRQGIGVGGFQKIYGGRQRNGS 90


>pdb|2PAJ|A Chain A, Crystal Structure Of An Amidohydrolase From An
           Environmental Sample Of Sargasso Sea
          Length = 492

 Score = 29.6 bits (65), Expect = 4.6,   Method: Compositional matrix adjust.
 Identities = 38/176 (21%), Positives = 70/176 (39%), Gaps = 19/176 (10%)

Query: 131 YMDAVKANLGGKKVIFCGLIQYL--NLFGVAIGYTIAASVSMMA---IKRSNCFQKSG-- 183
           Y D+  +  G   V FCG   +L  +++   +    A  ++++A      ++C Q +G  
Sbjct: 255 YQDSAYSMYGKSPVAFCGEHDWLGSDVWYAHLVKVDADEIALLAQTGTGVAHCPQSNGRL 314

Query: 184 GKDPC---HMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGK 240
           G   C    M+  G  ++ G+     ++  D        I    M++    A LG+    
Sbjct: 315 GSGICPVREMADAGVPVSIGVDGAASNEAADM-------ISEVHMTWLAQRARLGMLAQP 367

Query: 241 VAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQD 296
                SF+G     SI  +   GT  G + +   L  +G +A  Y+  I +  + D
Sbjct: 368 AYRGGSFEGGAGAASIAEVIHWGTAGGARVM--GLDEVGKVAVGYAADIAVYRLDD 421


>pdb|1AF0|A Chain A, Serratia Protease In Complex With Inhibitor
          Length = 471

 Score = 28.5 bits (62), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 92  WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
           + A P +  + A+ +LY ANL +   R+GD V G  + T  D +      +KVIF 
Sbjct: 230 YAAAPLLDDIAAIQHLYGANLST---RTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282


>pdb|1SAT|A Chain A, Crystal Structure Of The 50 Kda Metallo Protease From S.
           Marcescens
          Length = 471

 Score = 28.5 bits (62), Expect = 9.6,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 92  WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
           + A P +  + A+ +LY ANL +   R+GD V G  + T  D +      +KVIF 
Sbjct: 230 YAAAPLLDDIAAIQHLYGANLST---RTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282


>pdb|1SRP|A Chain A, Structural Analysis Of Serratia Protease
          Length = 471

 Score = 28.5 bits (62), Expect = 9.7,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 92  WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
           + A P +  + A+ +LY ANL +   R+GD V G  + T  D +      +KVIF 
Sbjct: 230 YAAAPLLDDIAAIQHLYGANLST---RTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282


>pdb|1SMP|A Chain A, Crystal Structure Of A Complex Between Serratia Marcescens
           Metallo-Protease And An Inhibitor From Erwinia
           Chrysanthemi
          Length = 471

 Score = 28.5 bits (62), Expect = 9.8,   Method: Compositional matrix adjust.
 Identities = 19/56 (33%), Positives = 29/56 (51%), Gaps = 3/56 (5%)

Query: 92  WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147
           + A P +  + A+ +LY ANL +   R+GD V G  + T  D +      +KVIF 
Sbjct: 230 YAAAPLLDDIAAIQHLYGANLST---RTGDTVYGFNSNTGRDFLSTTSNSQKVIFA 282


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.139    0.438 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,154,072
Number of Sequences: 62578
Number of extensions: 620309
Number of successful extensions: 1611
Number of sequences better than 100.0: 15
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 1609
Number of HSP's gapped (non-prelim): 15
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)