Query 010376
Match_columns 512
No_of_seqs 206 out of 1610
Neff 9.4
Searched_HMMs 46136
Date Thu Mar 28 23:48:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010376.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010376hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1303 Amino acid transporter 100.0 7.7E-56 1.7E-60 443.6 35.4 406 55-501 31-437 (437)
2 PTZ00206 amino acid transporte 100.0 4.6E-54 1E-58 443.8 33.7 405 60-499 58-465 (467)
3 KOG1304 Amino acid transporter 100.0 4.1E-54 8.9E-59 422.8 31.3 390 59-498 44-449 (449)
4 PLN03074 auxin influx permease 100.0 1.3E-48 2.9E-53 401.0 33.7 396 61-512 45-465 (473)
5 PF01490 Aa_trans: Transmembra 100.0 1.4E-51 3E-56 423.8 -1.7 403 60-495 1-408 (409)
6 KOG1305 Amino acid transporter 100.0 1.3E-43 2.8E-48 353.9 27.4 400 59-500 3-407 (411)
7 KOG4303 Vesicular inhibitory a 100.0 4.7E-44 1E-48 330.5 5.7 411 55-508 110-524 (524)
8 COG0814 SdaC Amino acid permea 100.0 3.9E-31 8.4E-36 268.2 33.3 387 58-489 5-406 (415)
9 PRK10483 tryptophan permease; 99.9 5.6E-25 1.2E-29 219.3 31.0 355 57-466 6-373 (414)
10 PF03222 Trp_Tyr_perm: Tryptop 99.9 2.5E-24 5.4E-29 217.1 33.5 352 61-468 2-367 (394)
11 PRK09664 tryptophan permease T 99.9 1.7E-24 3.8E-29 215.5 30.6 353 63-466 10-374 (415)
12 PRK15132 tyrosine transporter 99.9 1.4E-23 3.1E-28 210.4 30.7 348 63-467 4-363 (403)
13 TIGR00837 araaP aromatic amino 99.9 7.3E-24 1.6E-28 215.5 24.7 346 67-466 2-359 (381)
14 PRK13629 threonine/serine tran 99.9 7.5E-20 1.6E-24 182.4 32.5 395 66-497 23-441 (443)
15 KOG1287 Amino acid transporter 99.9 2.2E-20 4.7E-25 186.3 20.7 369 54-473 6-393 (479)
16 TIGR00814 stp serine transport 99.8 9.5E-19 2.1E-23 176.2 28.9 361 65-465 6-378 (397)
17 PRK10655 potE putrescine trans 99.7 7.1E-15 1.5E-19 152.4 35.0 241 58-333 4-247 (438)
18 PRK10249 phenylalanine transpo 99.7 1.2E-14 2.7E-19 151.0 34.5 250 56-334 17-268 (458)
19 PRK15049 L-asparagine permease 99.7 1.8E-14 3.8E-19 151.1 35.1 371 56-465 24-405 (499)
20 PRK10435 cadB lysine/cadaverin 99.7 1.7E-14 3.6E-19 149.2 33.8 243 57-335 2-247 (435)
21 PRK10238 aromatic amino acid t 99.7 2E-14 4.3E-19 149.4 33.1 240 55-326 7-251 (456)
22 TIGR00906 2A0303 cationic amin 99.7 3.3E-14 7.1E-19 150.6 35.2 375 56-465 24-410 (557)
23 PRK10644 arginine:agmatin anti 99.7 5E-14 1.1E-18 146.2 34.9 244 57-335 5-251 (445)
24 PRK10746 putative transport pr 99.7 6.6E-14 1.4E-18 145.5 35.0 371 56-466 6-388 (461)
25 COG1113 AnsP Gamma-aminobutyra 99.7 1.6E-14 3.6E-19 142.1 27.1 371 54-465 7-388 (462)
26 TIGR00905 2A0302 transporter, 99.7 1.1E-13 2.5E-18 144.6 35.2 250 58-334 5-257 (473)
27 TIGR01773 GABAperm gamma-amino 99.7 9.6E-14 2.1E-18 144.5 34.2 252 55-335 7-261 (452)
28 PRK11049 D-alanine/D-serine/gl 99.7 1E-13 2.2E-18 144.7 34.5 245 56-332 16-268 (469)
29 PRK11387 S-methylmethionine tr 99.7 1.3E-13 2.8E-18 144.1 34.6 249 57-335 11-266 (471)
30 PRK10836 lysine transporter; P 99.7 1.7E-13 3.8E-18 143.7 35.2 253 54-335 9-265 (489)
31 PRK10580 proY putative proline 99.7 3.8E-13 8.3E-18 140.0 36.3 246 56-330 5-254 (457)
32 TIGR00930 2a30 K-Cl cotranspor 99.7 2.2E-13 4.7E-18 150.9 35.9 259 57-331 73-336 (953)
33 TIGR00913 2A0310 amino acid pe 99.7 2.7E-13 5.8E-18 142.2 34.7 250 59-329 1-251 (478)
34 PRK11021 putative transporter; 99.7 4.4E-13 9.6E-18 137.7 35.3 229 63-329 2-231 (410)
35 TIGR03810 arg_ornith_anti argi 99.7 2.6E-13 5.6E-18 141.7 34.0 366 60-466 1-380 (468)
36 TIGR00909 2A0306 amino acid tr 99.6 6.5E-13 1.4E-17 137.4 32.4 246 59-333 2-253 (429)
37 TIGR00911 2A0308 L-type amino 99.6 6.8E-13 1.5E-17 139.8 32.2 254 54-335 36-295 (501)
38 TIGR00908 2A0305 ethanolamine 99.6 8.2E-13 1.8E-17 137.2 32.3 242 56-328 3-244 (442)
39 PRK11357 frlA putative fructos 99.6 1.6E-12 3.4E-17 135.1 31.2 243 56-331 4-251 (445)
40 PRK10197 gamma-aminobutyrate t 99.6 5.9E-12 1.3E-16 130.5 33.2 348 71-465 3-367 (446)
41 COG0833 LysP Amino acid transp 99.5 1.5E-11 3.2E-16 124.0 28.9 367 57-464 41-426 (541)
42 TIGR00912 2A0309 spore germina 99.5 2.1E-11 4.6E-16 123.0 28.3 238 61-337 2-240 (359)
43 PF13520 AA_permease_2: Amino 99.5 1E-10 2.3E-15 120.9 30.9 291 63-385 2-303 (426)
44 TIGR00907 2A0304 amino acid pe 99.4 5.5E-10 1.2E-14 117.4 31.3 255 55-327 7-269 (482)
45 TIGR03428 ureacarb_perm permea 99.4 5.7E-09 1.2E-13 109.4 38.2 260 55-335 8-273 (475)
46 COG0531 PotE Amino acid transp 99.4 1.4E-09 3E-14 113.9 33.2 252 56-336 8-262 (466)
47 KOG1286 Amino acid transporter 99.4 4.1E-11 8.8E-16 124.8 20.8 377 56-464 26-421 (554)
48 PRK15238 inner membrane transp 99.3 1.6E-08 3.5E-13 106.5 36.6 257 58-331 5-267 (496)
49 TIGR03813 put_Glu_GABA_T putat 99.2 2.4E-08 5.1E-13 104.7 32.7 246 62-335 3-254 (474)
50 TIGR00910 2A0307_GadC glutamat 99.2 5.1E-08 1.1E-12 102.6 32.5 239 59-328 3-247 (507)
51 PF03845 Spore_permease: Spore 99.1 1.3E-07 2.9E-12 93.7 26.9 236 61-337 1-236 (320)
52 PF00324 AA_permease: Amino ac 99.1 9.2E-10 2E-14 115.5 11.9 245 71-337 6-262 (478)
53 KOG3832 Predicted amino acid t 98.9 8.3E-09 1.8E-13 90.2 11.0 218 66-301 16-302 (319)
54 KOG1289 Amino acid transporter 98.9 3E-07 6.5E-12 93.1 23.5 262 55-337 43-314 (550)
55 PRK12488 acetate permease; Pro 98.4 0.0026 5.6E-08 67.8 35.9 153 58-232 65-220 (549)
56 TIGR00800 ncs1 NCS1 nucleoside 98.4 0.0007 1.5E-08 70.3 30.7 193 129-337 76-273 (442)
57 PRK11375 allantoin permease; P 98.4 0.0019 4.1E-08 67.6 33.5 194 129-337 89-293 (484)
58 PRK09442 panF sodium/panthothe 98.3 0.0026 5.7E-08 66.9 33.8 153 58-230 39-196 (483)
59 TIGR02119 panF sodium/pantothe 98.3 0.0037 7.9E-08 65.6 33.5 156 57-232 37-197 (471)
60 COG3949 Uncharacterized membra 98.3 0.00058 1.2E-08 65.4 23.6 102 66-174 7-111 (349)
61 PF00474 SSF: Sodium:solute sy 98.2 0.00012 2.6E-09 75.3 20.4 155 59-234 5-162 (406)
62 TIGR00813 sss transporter, SSS 98.2 0.0023 4.9E-08 65.8 27.8 148 60-228 3-152 (407)
63 TIGR02711 symport_actP cation/ 98.2 0.016 3.6E-07 61.7 34.8 150 58-229 65-217 (549)
64 TIGR00796 livcs branched-chain 98.1 0.0047 1E-07 62.1 28.5 75 70-155 3-80 (378)
65 TIGR02358 thia_cytX probable h 98.1 0.0083 1.8E-07 61.0 30.6 176 129-337 58-234 (386)
66 PRK09395 actP acetate permease 98.1 0.019 4E-07 61.5 33.5 151 58-229 67-219 (551)
67 COG0591 PutP Na+/proline sympo 98.1 0.012 2.6E-07 61.8 31.5 153 59-231 37-194 (493)
68 TIGR03648 Na_symport_lg probab 97.9 0.059 1.3E-06 57.7 38.4 151 57-228 29-181 (552)
69 PRK11017 codB cytosine permeas 97.8 0.048 1E-06 55.8 29.9 173 129-336 71-244 (404)
70 PRK15419 proline:sodium sympor 97.8 0.04 8.7E-07 58.2 29.7 156 57-229 37-197 (502)
71 COG1457 CodB Purine-cytosine p 97.7 0.039 8.4E-07 56.2 26.8 174 132-338 84-258 (442)
72 TIGR02121 Na_Pro_sym sodium/pr 97.7 0.099 2.2E-06 55.0 31.3 157 58-230 34-194 (487)
73 COG1914 MntH Mn2+ and Fe2+ tra 97.5 0.13 2.8E-06 52.2 29.5 136 60-218 15-152 (416)
74 KOG2082 K+/Cl- cotransporter K 97.5 0.037 7.9E-07 58.5 22.8 111 61-175 114-226 (1075)
75 PRK00701 manganese transport p 97.2 0.33 7.1E-06 50.2 32.4 45 130-174 95-139 (439)
76 PRK10484 putative transporter; 97.1 0.5 1.1E-05 50.3 34.5 160 56-230 34-199 (523)
77 TIGR00835 agcS amino acid carr 97.0 0.024 5.1E-07 57.7 15.8 88 60-150 45-138 (425)
78 COG1953 FUI1 Cytosine/uracil/t 97.0 0.54 1.2E-05 48.3 29.4 202 129-347 103-318 (497)
79 KOG1288 Amino acid transporter 96.9 0.2 4.4E-06 52.7 21.2 58 273-333 295-352 (945)
80 PF02133 Transp_cyt_pur: Perme 96.8 0.015 3.3E-07 60.4 12.2 49 129-177 71-119 (440)
81 KOG2083 Na+/K+ symporter [Inor 96.5 0.01 2.2E-07 61.2 8.4 233 68-326 41-274 (643)
82 PF02554 CstA: Carbon starvati 96.5 0.6 1.3E-05 46.1 20.0 105 63-172 53-157 (376)
83 COG4147 DhlC Predicted symport 96.1 1.9 4.1E-05 44.0 28.4 188 129-333 104-294 (529)
84 PF01566 Nramp: Natural resist 96.0 2 4.4E-05 43.2 24.2 82 130-225 43-126 (358)
85 COG1966 CstA Carbon starvation 94.6 1.9 4.2E-05 44.7 16.2 104 63-171 53-156 (575)
86 PRK15015 carbon starvation pro 94.1 0.64 1.4E-05 49.2 12.0 101 66-171 87-187 (701)
87 PRK15433 branched-chain amino 93.7 9.4 0.0002 39.2 21.7 76 63-150 9-88 (439)
88 PHA02764 hypothetical protein; 93.5 4.5 9.8E-05 39.1 15.3 96 54-156 6-104 (399)
89 PF05525 Branch_AA_trans: Bran 93.0 12 0.00027 38.3 24.0 77 64-151 5-84 (427)
90 PF01235 Na_Ala_symp: Sodium:a 93.0 6.1 0.00013 40.3 16.5 83 58-142 15-101 (416)
91 TIGR00796 livcs branched-chain 92.5 1.2 2.7E-05 44.9 11.0 74 129-216 255-328 (378)
92 KOG2349 Na+:iodide/myo-inosito 92.3 3.7 8.1E-05 43.4 14.4 246 59-336 44-303 (585)
93 PF05525 Branch_AA_trans: Bran 92.1 1.4 3.1E-05 45.0 10.8 119 73-209 207-328 (427)
94 COG0733 Na+-dependent transpor 91.6 18 0.00038 37.0 26.1 246 63-330 10-269 (439)
95 COG4145 PanF Na+/panthothenate 88.0 30 0.00066 34.4 24.7 146 60-227 39-191 (473)
96 COG1114 BrnQ Branched-chain am 87.7 9.6 0.00021 38.4 12.2 119 73-209 209-330 (431)
97 COG1115 AlsT Na+/alanine sympo 86.9 30 0.00065 35.4 15.3 89 58-148 59-152 (452)
98 PRK15433 branched-chain amino 80.9 19 0.00042 37.0 11.3 66 130-209 266-331 (439)
99 COG0814 SdaC Amino acid permea 75.5 21 0.00047 36.6 10.1 182 306-496 221-409 (415)
100 PF05805 L6_membrane: L6 membr 71.5 24 0.00052 31.8 7.9 81 420-500 17-117 (195)
101 KOG1291 Mn2+ and Fe2+ transpor 69.6 1.4E+02 0.0031 30.8 18.6 57 115-174 78-134 (503)
102 TIGR01197 nramp NRAMP (natural 65.5 1.6E+02 0.0035 29.9 30.2 97 69-174 11-109 (390)
103 PF02028 BCCT: BCCT family tra 61.5 2.2E+02 0.0047 30.0 14.1 97 131-234 164-261 (485)
104 KOG4812 Golgi-associated prote 60.4 30 0.00065 32.0 6.4 79 420-502 160-254 (262)
105 KOG1289 Amino acid transporter 56.8 2.7E+02 0.0058 29.6 15.0 46 130-175 326-371 (550)
106 PRK04949 putative sulfate tran 50.4 1.9E+02 0.0041 27.4 10.5 40 292-336 15-54 (251)
107 PF01235 Na_Ala_symp: Sodium:a 50.0 95 0.0021 31.8 8.9 83 91-174 255-338 (416)
108 PRK13183 psbN photosystem II r 49.1 19 0.00042 23.8 2.4 30 308-337 4-33 (46)
109 PF00209 SNF: Sodium:neurotran 47.7 3.7E+02 0.0081 28.5 27.6 99 64-175 7-111 (523)
110 KOG3659 Sodium-neurotransmitte 47.0 4E+02 0.0086 28.7 16.8 84 63-153 83-171 (629)
111 COG5336 Uncharacterized protei 45.4 63 0.0014 25.9 5.2 43 65-108 47-89 (116)
112 COG4709 Predicted membrane pro 45.3 1.5E+02 0.0033 26.5 8.1 16 6-21 15-30 (195)
113 PF02468 PsbN: Photosystem II 42.5 27 0.00058 23.0 2.3 27 311-337 4-30 (43)
114 CHL00020 psbN photosystem II p 40.2 23 0.0005 23.1 1.8 27 311-337 4-30 (43)
115 PRK12768 CysZ-like protein; Re 35.7 3.8E+02 0.0083 25.2 10.3 28 295-327 9-36 (240)
116 PF11085 YqhR: Conserved membr 35.7 1.5E+02 0.0033 26.0 6.6 20 209-228 123-142 (173)
117 KOG2466 Uridine permease/thiam 35.3 5.5E+02 0.012 27.0 15.5 265 56-346 50-331 (572)
118 COG3763 Uncharacterized protei 33.3 1.2E+02 0.0026 22.3 4.7 31 478-508 8-39 (71)
119 PLN00151 potassium transporter 32.8 7.7E+02 0.017 27.8 23.3 44 418-462 474-517 (852)
120 COG1114 BrnQ Branched-chain am 32.6 5.6E+02 0.012 26.3 25.8 78 64-152 7-87 (431)
121 PHA02680 ORF090 IMV phosphoryl 31.4 1.7E+02 0.0038 22.4 5.4 62 274-339 13-74 (91)
122 TIGR00835 agcS amino acid carr 30.8 5.7E+02 0.012 26.4 11.0 84 91-175 282-366 (425)
123 PRK11281 hypothetical protein; 30.0 8E+02 0.017 29.0 13.0 31 306-336 540-570 (1113)
124 cd08766 Cyt_b561_ACYB-1_like P 29.4 3.1E+02 0.0068 23.5 7.6 68 306-377 37-104 (144)
125 PF11286 DUF3087: Protein of u 29.1 1.8E+02 0.0038 25.5 5.9 47 300-346 7-53 (165)
126 cd08765 Cyt_b561_CYBRD1 Verteb 27.8 3.6E+02 0.0079 23.4 7.7 68 306-377 44-111 (153)
127 COG1115 AlsT Na+/alanine sympo 27.1 7.2E+02 0.016 25.8 11.4 82 91-175 299-383 (452)
128 PF05915 DUF872: Eukaryotic pr 25.2 3.7E+02 0.008 22.0 6.9 23 64-86 41-63 (115)
129 TIGR00842 bcct choline/carniti 24.2 6.8E+02 0.015 26.1 10.3 46 129-174 120-169 (453)
130 KOG1619 Cytochrome b [Energy p 23.6 6.2E+02 0.013 23.7 10.3 77 294-377 76-152 (245)
131 PRK03356 L-carnitine/gamma-but 23.5 9E+02 0.019 25.6 12.5 98 130-233 170-273 (504)
132 PF05884 ZYG-11_interact: Inte 23.4 3.3E+02 0.0072 26.4 7.2 42 426-469 120-162 (299)
133 PRK09928 choline transport pro 23.3 8.6E+02 0.019 26.8 11.1 158 64-230 95-274 (679)
134 cd08763 Cyt_b561_CYB561 Verteb 23.0 4.2E+02 0.0092 22.6 7.2 68 306-377 37-104 (143)
135 PF10716 NdhL: NADH dehydrogen 22.6 2.2E+02 0.0047 21.6 4.6 30 435-465 13-42 (81)
136 PF12794 MscS_TM: Mechanosensi 22.2 7.8E+02 0.017 24.4 11.8 41 306-346 44-84 (340)
137 TIGR00909 2A0306 amino acid tr 20.1 9.2E+02 0.02 24.5 10.8 46 130-175 265-310 (429)
No 1
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=7.7e-56 Score=443.58 Aligned_cols=406 Identities=40% Similarity=0.709 Sum_probs=358.5
Q ss_pred CCcccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 55 ~~~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
....+|++|++++.++.+|.++|.|+|++|||+++.||+.|++++++.++++.||+.++.+|++.++.+.++|.+.|.|+
T Consensus 31 ~~~~~~~~s~~~a~~~~i~~~~G~gvLsLP~A~~~lGW~~G~~~Ll~~~iit~YT~~LL~~~~~~~~~~~~~r~~~Y~dl 110 (437)
T KOG1303|consen 31 PITPSRGGSWWQAAFHIINALIGAGVLSLPYALAQLGWISGIVILLLFAIITLYTATLLSRCWEMHEAVPGKRRYRYPDL 110 (437)
T ss_pred ccccCCCCcceehhhheehhhhhhhhhhhHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCccCCChHHH
Confidence 34456779999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
++++||+++++++.+.+.+.++++|+.|++..+|++..+.+..|.+.. ..+.+.|+++++++.+|++++||++.
T Consensus 111 ~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~------~l~~~~f~iif~~i~~~~s~lp~~~~ 184 (437)
T KOG1303|consen 111 GQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDN------SLDKQYFIIIFGLIVLPLSQLPNFHS 184 (437)
T ss_pred HHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccc------cccceehhhhHHHHHHHHHHCCCcch
Confidence 999999999999999999999999999999999999999988765432 23356789999999999999999999
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhH
Q 010376 215 VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEI 294 (512)
Q Consensus 215 l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 294 (512)
+++.|.++.+..+.+..+.+..++.........+...+ ..++ ++ ..++++|+++|+|.+|..+|+|
T Consensus 185 l~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~~~--~~~~-------~~-----~~f~a~g~iaFaf~gH~v~peI 250 (437)
T KOG1303|consen 185 LSYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGGYL--DLGT-------IP-----TVFTALGIIAFAYGGHAVLPEI 250 (437)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHhhccccccCCcccCcc--cCCC-------Cc-----chhhhhhheeeeecCCeeeeeh
Confidence 99999999999998888888777766644322222111 1111 00 1189999999999999999999
Q ss_pred HhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhhc
Q 010376 295 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFC 374 (512)
Q Consensus 295 ~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~ 374 (512)
+++||+| ++|+|++.+++.+++++|..++++||++||++++++++.|++ .|.|+...+++++.+|++.+++++.
T Consensus 251 q~tMk~p----~~f~~~~lis~~~~~~~y~~vai~GY~aFG~~~~~~il~s~~--~p~~~~~~ani~i~~h~i~s~~i~a 324 (437)
T KOG1303|consen 251 QHTMKSP----PKFKKALLISYIIVTFLYFPVAIIGYWAFGDSVPDNILLSLQ--PPTWLIALANILIVLHLIGSYQIYA 324 (437)
T ss_pred HhhcCCc----hhhhhHHHHHHHHHHHHHHHHHHhhhhhhccccchhhhhccc--CchhHHHHHHHHHHHHHhhhhhhhh
Confidence 9999999 679999999999999999999999999999999999999975 6899999999999999999999999
Q ss_pred cchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhhhh
Q 010376 375 QPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVY 454 (512)
Q Consensus 375 ~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~fi 454 (512)
.|+.+.+|+.....+++ + ++ +....|.+.|+.+++.+.++|+.+|+|+++++++||+....++++
T Consensus 325 ~pl~~~~E~~~~~~~~~--~------------~~-~~~~~R~~~Rt~~v~~~~~vA~~~PfFg~l~~lvGa~~~~p~t~i 389 (437)
T KOG1303|consen 325 QPLFDVVEKLIGVKHPD--F------------KK-RSLVLRLLVRTFFVAVTTFVALSFPFFGDLLSLVGAFLFWPLTFI 389 (437)
T ss_pred cchHHHHHHHhccCCcc--c------------cc-cccceeeehhhHHHHHHHHHHHhccccHhHHHHHHHHHHHHHHHH
Confidence 99999999987554332 0 11 133678999999999999999999999999999999999999999
Q ss_pred hhhhhhhhhccCCCchhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHh
Q 010376 455 FPIEMYKAQKKIGRGTTRWLGLQIL-NVSCFFITLVAAIGSVAGVVLD 501 (512)
Q Consensus 455 ~P~~~~l~~~~~~~~~~~~~~~~~~-~~~~~~~~~~g~~~si~~i~~~ 501 (512)
+|+++|++.+|.++...+|...+.+ .++++++++....++++.++.+
T Consensus 390 lP~~~yl~~~k~~~~s~~~~~~~~~~~~~~~~~~v~~~~~~~~~li~~ 437 (437)
T KOG1303|consen 390 LPCLMYLLIKKPKRFSPKWLLNWVIILVVGLLLSVLAAVGGVRSLIID 437 (437)
T ss_pred HHHHHHHHhhhhhhhhHHHHHHHHhhhhhhhhHHHHHHHHHHHHHhhC
Confidence 9999999999999888899988888 6999999999999999988754
No 2
>PTZ00206 amino acid transporter; Provisional
Probab=100.00 E-value=4.6e-54 Score=443.85 Aligned_cols=405 Identities=15% Similarity=0.187 Sum_probs=313.1
Q ss_pred ccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhh
Q 010376 60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL 139 (512)
Q Consensus 60 ~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 139 (512)
.++|..++++|++|+++|+|+|++|++|+++||++|++++++++.++.|+.+++.++.++. +. .+|+|+++++|
T Consensus 58 ~~gg~~~s~fnL~~~~iGaGILsLP~Af~~~G~v~giillil~a~ls~ys~~lL~~~~~~~----~~--~sY~~la~~~~ 131 (467)
T PTZ00206 58 PPGGIAASAFNIASSTVGAGIVGLPSAANSSGLVMAMIYLIIITAMTIFSIYALGVAADKT----NI--RTYEGVARVLL 131 (467)
T ss_pred CCCcHHHHHHHHHHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHhccC----CC--CCHHHHHHHHh
Confidence 4677899999999999999999999999999999999999999999999999999998752 22 39999999999
Q ss_pred CCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHH
Q 010376 140 GGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLS 219 (512)
Q Consensus 140 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 219 (512)
||++++++++.+.+.++|+|++|+++.+|.++.+++........ ......+..+.++..++++|++++|++++++++|
T Consensus 132 G~~g~~~v~~~~~~~~~G~cv~YlIiigd~l~~~l~~~~~~~~~--~~~~~~r~~~~~i~~~i~lPLs~~r~i~~L~~~S 209 (467)
T PTZ00206 132 GPWGSYYVAATRAFHGFSACVAYVISVGDILSATLKGTNAPDFL--KQKSGNRLLTSLMWLCFMLPLVIPRHIDSLRYVS 209 (467)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCccchh--hhccCcEEeeeehhhhHhhhcccccchHHHHHHH
Confidence 99999999999999999999999999999999988531100000 0001122234455667889999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcC
Q 010376 220 IVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIR 299 (512)
Q Consensus 220 ~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~ 299 (512)
.+++++++...+.+++....+.... ..+..+.+.+.. ++........+.+.++|+++|||.||.+++++++|||
T Consensus 210 ~i~~~~i~~~vi~ivi~~~~~~~~~-----~~~~~~~~~~~~-~~~~~f~~~~~~~~algi~~faF~~h~~~~~i~~~M~ 283 (467)
T PTZ00206 210 TIAVSFMVYLVIVIVVHSCMNGLPE-----NIKNVSVGKDDN-AEIILFNSGNRAIEGLGVFIFAYVFQITAYEVYMDMT 283 (467)
T ss_pred HHHHHHHHHHHhhhhhhhhcccCcc-----cccccccCCCCC-CceEEecCchHHHhhhhHHHhhhhhhhhhHHHHHhhc
Confidence 9999887754444433322221111 111111111000 0011111223688999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhhccchHH
Q 010376 300 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFA 379 (512)
Q Consensus 300 ~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~ 379 (512)
||++ +|+.+++..++.+++++|.++|++||+.||++++++++.|++ ...+....++++++++.++++||++.+|+|+
T Consensus 284 ~~t~--~~~~~v~~~s~~i~~~lY~~~G~~GYl~fG~~v~~~Illn~~-p~~~~~~~v~~~~~~~~v~~sypL~~~p~r~ 360 (467)
T PTZ00206 284 NRSV--GKFVLASTIAMGMCFTMYVLTAFFGYMDFGRNVTGSVLLMYD-PVNEPAIMVGFVGVLVKLFVSYALLGMACRN 360 (467)
T ss_pred ccch--hHHHHHHHHHHHHHHHHHHHHHHhhhhccccccchHHHHhCC-CCCCchhhHHHHHHHHHHHHhhhhhhhhHHH
Confidence 9865 899999999999999999999999999999999999999983 1234556788899999999999999999999
Q ss_pred HHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhhhhhhhhh
Q 010376 380 FVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEM 459 (512)
Q Consensus 380 ~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~fi~P~~~ 459 (512)
.+++.+. |+. + +.+ . +++...+..+++.++++|+++||++.+++++||++++.++|++|+++
T Consensus 361 ~i~~~~~--~~~-----~----~~~---~----~~~~~~~~~l~~~~l~iAi~vP~l~~vl~lvGa~~~~~l~fi~P~lf 422 (467)
T PTZ00206 361 ALYDVIG--WDA-----R----KVA---F----WKHCIAVVTLSVVMLLCGLFIPKINTVLGFAGSISGGLLGFILPALL 422 (467)
T ss_pred HHHHHhC--CCc-----c----cCc---h----hhHHHHHHHHHHHHHHHHhccCCHHHhhhhhhHHHHHHHHHHHHHHH
Confidence 9998762 221 0 111 1 33445556666778899999999999999999999999999999999
Q ss_pred hhhhc---cCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010376 460 YKAQK---KIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVV 499 (512)
Q Consensus 460 ~l~~~---~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~i~ 499 (512)
|++.. +++.+..+|...+++.++|++.+++|||+|+++.+
T Consensus 423 ~l~~~~~~~~~~~~~~~~~~~~lli~Gv~~~v~Gt~~si~~~~ 465 (467)
T PTZ00206 423 FMYSGGFTWQKVGPFYYISTYVVLITGVIAIVFGTGATIWGVT 465 (467)
T ss_pred HHhcCCccHHhhchHHHHHHHHHHHHHhheEEecchhHhhHHh
Confidence 99842 22222334455667788899999999999999876
No 3
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=100.00 E-value=4.1e-54 Score=422.84 Aligned_cols=390 Identities=16% Similarity=0.224 Sum_probs=334.0
Q ss_pred cccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 010376 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 138 (512)
++..|..++..|+.+.++|+|+|++|+||+++|++.|.+..++++.+|.|+.+.+++|.++...+.+....+|++.++.+
T Consensus 44 ~~~~s~~~tl~hl~k~~iGtG~l~lP~AFk~sG~~~G~~~~~~i~~l~~yc~~~LVk~~~~L~~~~~~~~~~y~~~~~~a 123 (449)
T KOG1304|consen 44 EHPTSATQTLIHLLKGSIGTGILSLPLAFKNSGLVMGLLLTVFIGFLCTYCMHLLVKCSHKLCKRFRGPSLDYAETAESA 123 (449)
T ss_pred CCCCchHHHHHHHHHhhhccccccChHHHHhcchHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcCCccccHHHHHHHH
Confidence 34567899999999999999999999999999999999999999999999999999998776655554457888887654
Q ss_pred ----------hCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc
Q 010376 139 ----------LGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ 208 (512)
Q Consensus 139 ----------~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 208 (512)
+|+++|++++..+++.++|.|++|+++++++++++.+.. ..-..+.+.++++..+..+++++
T Consensus 124 ~~~~~~~~r~~g~~~r~~V~~~L~i~QlGfc~vY~VFva~nl~~i~~~~--------~~~~~s~~~~i~~~~~~~lll~~ 195 (449)
T KOG1304|consen 124 MEGGPGWLRKYGPAARFVVNFFLVITQLGFCCVYLVFVATNLKQIVDEH--------SPGVLSVRLYILIQLPPLLLLNL 195 (449)
T ss_pred HcCCcHHHHhhcHHHHHHHHHHHHHHHhchhhEEeeeHHhhHHHHHhcc--------CCCCccHHHHHHHHHHHHHHHHH
Confidence 788999999999999999999999999999999999721 11145677888899999999999
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccc
Q 010376 209 IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFS 288 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~ 288 (512)
+||++.|+.+|.++++++++.++++. ++..++.....+ .+...++.+.+..+|+.+|||+|+
T Consensus 196 Ir~Lk~Lsp~Sl~Anv~~~~g~~ii~----~y~~~~~~~~~~--------------~~~~~~~~~~~lf~GtaifafEGi 257 (449)
T KOG1304|consen 196 IRNLKILSPFSLFANVFILVGLAIIM----YYLVQDLPPTSD--------------LPAVTGWSGLPLFFGTAIFAFEGI 257 (449)
T ss_pred HHhhHHhhHHHHHHHHHHHHHHHHHH----HHHHhccCCccc--------------cccccchhhhHHHHHHHHHHhccc
Confidence 99999999999999999885544443 344443221111 222334558999999999999999
Q ss_pred hhhHhHHhhcCCCchhhhhhh---hHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHH
Q 010376 289 IILLEIQDTIRSPPAEYKTMK---KATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVH 365 (512)
Q Consensus 289 ~~i~~i~~em~~p~~~~~~~~---~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~ 365 (512)
..+.|+.++||+| ++++ +++..++.+++++|+.+|++||++||+++++.++.|+| + +|+...+++++++.
T Consensus 258 g~VLPlEn~Mk~P----~~F~g~~gVLn~~M~~V~~ly~~~Gf~GYl~fG~~v~~sITLNLP--~-~~l~~~Vkl~~ai~ 330 (449)
T KOG1304|consen 258 GMVLPLENSMKKP----QKFPGPFGVLNLGMGIVTLLYIFLGFFGYLAFGDDVKGSITLNLP--Q-EILSQTVKLLLAIA 330 (449)
T ss_pred eEEEehhhcccCh----hhcCCccchHHHHHHHHHHHHHHHHHHHHhhccccccceEEecCC--c-cHHHHHHHHHHHHH
Confidence 9999999999999 8999 99999999999999999999999999999999999998 3 89999999999999
Q ss_pred HHHhhhhhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhh
Q 010376 366 LVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGA 445 (512)
Q Consensus 366 ~~~s~pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga 445 (512)
+..+||++++|..+.+|+.+.++.... + .++..+.+|..+++++..+|..+||++.+++++||
T Consensus 331 I~ls~pLQ~yv~~eIi~~~i~~k~~~~----------------~-~~~~~~~~R~~lVllt~~iA~~iPnL~~fisLVGs 393 (449)
T KOG1304|consen 331 IFLTYPLQFYVPIEIIEPGIRKKFSEN----------------R-KKLLEYALRVFLVLLTFLIAVAVPNLALFISLVGS 393 (449)
T ss_pred HHHcCchhhhhhHHHHHHhHHHhcCcc----------------h-hHHHHHHHHHHHHHHHHHHHHHCCcHHhhHHHHHH
Confidence 999999999999999999875543210 1 33778899999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhhhhhhccCCC---chhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010376 446 MGFWPLTVYFPIEMYKAQKKIGR---GTTRWLGLQILNVSCFFITLVAAIGSVAGV 498 (512)
Q Consensus 446 ~~~~~l~fi~P~~~~l~~~~~~~---~~~~~~~~~~~~~~~~~~~~~g~~~si~~i 498 (512)
++++.+.+++|++++++.++.+. ++++++....+.++|++..++|||.|+.++
T Consensus 394 ~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~~v~Gty~si~~i 449 (449)
T KOG1304|consen 394 VSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFGFVYGTYTSIKEI 449 (449)
T ss_pred HHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHHHHHHHhhhhhcC
Confidence 99999999999999999876543 344556667778889989999999998764
No 4
>PLN03074 auxin influx permease; Provisional
Probab=100.00 E-value=1.3e-48 Score=401.02 Aligned_cols=396 Identities=17% Similarity=0.193 Sum_probs=313.5
Q ss_pred cccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCC---Cc--c--cccHHH
Q 010376 61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVT---GQ--R--NYTYMD 133 (512)
Q Consensus 61 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~---~~--~--~~~y~~ 133 (512)
++|..++.+++++..+|.|+|+||++|+++||++|++.++++++++.||.+++.+++.++..+. +. + ..+|.|
T Consensus 45 ~~s~~~~~~~l~~~~vG~GILaLP~Af~~~G~v~Gii~lv~~~~l~~Yt~~lL~~~~~~~~~r~~~~~~~~~~~~~~~~e 124 (473)
T PLN03074 45 GGSVYDAWFSCASNQVAQVLLTLPYSFSQLGMLSGILFQIFYGLLGSWTAYLISVLYVEYRARKEREKVDFKNHVIQWFE 124 (473)
T ss_pred CchHHHHHHHHHHHHHhHHHHhHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcCCCchhHHHHHHHH
Confidence 4678899999999999999999999999999999999999999999999999998754322111 11 1 126789
Q ss_pred HHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcc
Q 010376 134 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD 213 (512)
Q Consensus 134 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 213 (512)
+++..+||+++.+..+..++++++.|+.|++..++.+..+.. ..+.+.|++++.++++|++++|+++
T Consensus 125 ~~~~~~G~~~~~~~~~~~~v~l~~~~v~~li~~~~~~~~l~~-------------~~~~~~~~~i~~~v~~~~~~i~sl~ 191 (473)
T PLN03074 125 VLDGLLGPYWKNVGLAFNCTFLLFGSVIQLIACASNIYYIND-------------NLDKRTWTYIFGACCATTVFIPSFH 191 (473)
T ss_pred HHHHhcChhHHHHHHHHHhhhhHHHHHHHHHHHhhhhhhhCC-------------CcCCCeEEeehHHHHHHHHHccCHH
Confidence 999999999999999999999999999999988877665421 2345677888889999999999999
Q ss_pred hhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHh
Q 010376 214 QVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLE 293 (512)
Q Consensus 214 ~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 293 (512)
+++++|.+++.+++.+...++...+... .. ++.+ .+.+.++...+.++++++|||.+|..+|+
T Consensus 192 ~l~~~S~ig~~~tl~~av~i~i~~i~~~---~~-----~~~~---------~~~~~~~~~~f~~~~~i~faf~g~~v~~~ 254 (473)
T PLN03074 192 NYRIWSFLGLLMTTYTAWYMTIAALSHG---QV-----EGVK---------HSGPTKLVLYFTGATNILYTFGGHAVTVE 254 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---CC-----CCCC---------CCCchhHHHHHHHHHHHHHHhcccccHHH
Confidence 9999999999886643333322222221 11 0110 00112344677888899999999999999
Q ss_pred HHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCC--cccccccccCCChHHHHHHHHHHHHHHHHhhh
Q 010376 294 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP--NNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 371 (512)
Q Consensus 294 i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~--~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~p 371 (512)
+++||||| +++++....+...++.+|+.+|+.||+.||++++ ++.+.|+| ++....+++++++++...+||
T Consensus 255 I~~~M~~P----~~F~~~~~l~~~~v~~~y~~~~~~gY~~fG~~~~~~s~~l~~lp---~~~~~~~~~~~~~i~~~~sy~ 327 (473)
T PLN03074 255 IMHAMWKP----QKFKYIYLAATLYVLTLTLPSAAAVYWAFGDELLTHSNAFSLLP---RSGWRDAAVILMLIHQFITFG 327 (473)
T ss_pred HHHhccCh----hcccchHHHHHHHHHHHHHHHHHeeeeeechhhhhchhHHhcCC---CchHHHHHHHHHHHHHHHHHH
Confidence 99999999 8899999999999999999999999999999865 45677776 233468999999999999999
Q ss_pred hhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhh
Q 010376 372 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPL 451 (512)
Q Consensus 372 l~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l 451 (512)
+++.|+.+.+|+..... + + +....|+.+|+.+++.++++|+.+|+|+.+++++||++++.+
T Consensus 328 l~~~p~~~~~e~~~~~~--~-----~------------k~~~~r~~~R~~lv~~~~~iA~~IP~fg~llsLvGs~~~s~l 388 (473)
T PLN03074 328 FACTPLYFVWEKAIGVH--D-----T------------KSICLRALARLPVVVPIWFLAIIFPFFGPINSAVGALLVSFT 388 (473)
T ss_pred HHHhhHHHHHHHHhccc--c-----c------------ccHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHH
Confidence 99999999988865221 0 0 123678899999999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhccCC-------------CchhHH--HHHHHHHHHHHHHH-HHHHHHHHHHHHHhcccccCCCCCC
Q 010376 452 TVYFPIEMYKAQKKIG-------------RGTTRW--LGLQILNVSCFFIT-LVAAIGSVAGVVLDLKTYKPFKTRY 512 (512)
Q Consensus 452 ~fi~P~~~~l~~~~~~-------------~~~~~~--~~~~~~~~~~~~~~-~~g~~~si~~i~~~~~~~~~f~~~~ 512 (512)
+|++|+++|++.++++ .++++| +....+++++.++| ++|+|+|+++|++++++++.|++-|
T Consensus 389 ~~i~P~l~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~n~~iiv~~~~~g~~~G~~asi~~ii~~~~~~~~f~~~~ 465 (473)
T PLN03074 389 VYIIPSLAHMLTYRSASARQNAAEKPPFFLPSWTGMYVVNAFVVVWVLVVGFGFGGWASMTNFVRQIDTFGLFAKCY 465 (473)
T ss_pred HHHHHHHHHHHHhcchhhhhhcccCCcccCCccceehhhhhHHHHhhhhHhhccchHHHHHHHHHhhhhhhhhhhhc
Confidence 9999999999865432 111121 33444455555555 6899999999999999999998753
No 5
>PF01490 Aa_trans: Transmembrane amino acid transporter protein; InterPro: IPR013057 This transmembrane region is found in many amino acid transporters including P34579 from SWISSPROT (UNC-47) and P40501 from SWISSPROT (MTR). UNC-47 encodes a vesicular amino butyric acid (GABA) transporter, (VGAT) and is is predicted to have 10 transmembrane domains UNC47_CAEEL []. MTR is an N system amino acid transporter system protein involved in methyltryptophan resistance MTR_NEUCR. Other members of this family include proline transporters and amino acid transporters whose specificity has not yet been identified.
Probab=100.00 E-value=1.4e-51 Score=423.80 Aligned_cols=403 Identities=26% Similarity=0.383 Sum_probs=322.6
Q ss_pred ccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhh
Q 010376 60 RTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL 139 (512)
Q Consensus 60 ~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 139 (512)
+|+|++++.++++|+++|+|+|++|++|+++||++|++++++++.++.|+.+++.++.++.+ .+.+..+|+|++++.+
T Consensus 1 ~~~s~~~~~~~l~~~~iG~G~L~lP~af~~~G~~~g~i~l~~~~~~s~~t~~~l~~~~~~~~--~~~~~~~y~~l~~~~~ 78 (409)
T PF01490_consen 1 HKGSWFSAFFNLINSIIGAGILSLPYAFAQSGWVLGIILLVLVALLSYYTMYLLVRAANAMP--NGTGRRSYGDLARRAF 78 (409)
T ss_pred CCccHHHHHHHHHHHHHhHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHhhhhhhccccccc--cccccccccccccccc
Confidence 46889999999999999999999999999999999999999999999999999999987644 2233469999999999
Q ss_pred CCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHH
Q 010376 140 GGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLS 219 (512)
Q Consensus 140 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s 219 (512)
||++++++++++.+.++|.+++|+++.+|.+.++.+..+.+ ...++..+.++.+++++|++++|+++++++.|
T Consensus 79 G~~~~~~~~~~~~~~~~g~~v~y~i~~~~~l~~~~~~~~~~-------~~~~~~~~~~i~~~i~~pls~~~~l~~l~~~s 151 (409)
T PF01490_consen 79 GPKGKWFVDICIFIYLFGSCVAYLIIIGDSLSSLIPSFFGD-------LFISRYVWIIIFALIVLPLSFLKNLKSLRYLS 151 (409)
T ss_pred cccccccccchheeccccccceeEEEeeeeeeccccccccc-------ccccccccccccccccccccccchhhHHHHHh
Confidence 99999999999999999999999999999999998753221 23456677788889999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcC
Q 010376 220 IVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIR 299 (512)
Q Consensus 220 ~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~ 299 (512)
.++.++++..+.+.+..... ....++.+...+ +.....++++.+.++++++|||.||.++|++++|||
T Consensus 152 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~-----------~~~~~~~~~~~~~~~~i~~faf~~~~~~~~i~~~m~ 219 (409)
T PF01490_consen 152 ILGLFSIFYFIVIVVIYIIS-YGPGEPSGVPSP-----------PVWPFISFSGFFSAFGIIIFAFSCHPNLPPIQSEMK 219 (409)
T ss_pred hhhhhccceeeeeecceeee-eecccccccccc-----------cccccchhhHHHHhhhhhhhhhhcccccceeeeecc
Confidence 99999987432222211111 111111111100 012334567899999999999999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhhccchHH
Q 010376 300 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPLFA 379 (512)
Q Consensus 300 ~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~ 379 (512)
+|++ .+|+++++..++.+++++|+.+|++||++||+++++|++.|++ ++++...++++++.++++.+||++.+|.++
T Consensus 220 ~~~~-~~~~~~~~~~s~~~~~~~y~~~g~~gy~~fg~~~~~~il~n~~--~~~~~~~i~~~~~~i~~~~s~pl~~~p~~~ 296 (409)
T PF01490_consen 220 DPSK-FKKMKKVLSISMIICFIIYLLFGIFGYLAFGDSVQGNILLNLP--NDDVLIIIARILLVISLLLSYPLQLFPARN 296 (409)
T ss_pred CCcc-ccccceeeeehhhhhhHHhhhhhhcccceeeeeecchhhhcCC--CcccccccccccchhhhhhccccccchhHh
Confidence 9941 0244599999999999999999999999999999999999987 444678999999999999999999999999
Q ss_pred HHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhhhhhhhhh
Q 010376 380 FVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEM 459 (512)
Q Consensus 380 ~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~fi~P~~~ 459 (512)
.+++.+.+..+. +++... .++..+++|+.+|+.+++.++++|..+||++++++++||+++..++|++|+++
T Consensus 297 ~l~~~~~~~~~~----~~~~~~-----~~~~~~~~~~~~~~~~~~~~~~iA~~vp~~~~i~~l~Ga~~~~~i~fi~P~l~ 367 (409)
T PF01490_consen 297 SLENLLFKRAAS----SRDSPK-----NTPSSRWLRYLIRIILVLLSFLIAIFVPNFGDIISLVGALFGSFISFILPALL 367 (409)
T ss_pred hhhhheeccccc----cccccc-----cccccceeeeeeecchhhhhhhhhhhccchhhhhcccchHHHHhHHHHHHHHH
Confidence 999987543000 000000 01122366789999999999999999999999999999999999999999999
Q ss_pred hhhhccCCCchhHHHH-----HHHHHHHHHHHHHHHHHHHH
Q 010376 460 YKAQKKIGRGTTRWLG-----LQILNVSCFFITLVAAIGSV 495 (512)
Q Consensus 460 ~l~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~g~~~si 495 (512)
|+|.+++++.+.+++. .+.+.++|++..+.|++.++
T Consensus 368 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~i 408 (409)
T PF01490_consen 368 YLKLFKRKRNSFGWWWILSILNWIIIVFGVVLMVFGTYQSI 408 (409)
T ss_pred HHHhhcccccccceeehhhccceEEEEEeeehhHHhHHHHc
Confidence 9999887754444432 34445666666677776654
No 6
>KOG1305 consensus Amino acid transporter protein [Amino acid transport and metabolism]
Probab=100.00 E-value=1.3e-43 Score=353.85 Aligned_cols=400 Identities=18% Similarity=0.281 Sum_probs=318.4
Q ss_pred cccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 010376 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 138 (512)
+++.|...+++|++|+++|+|++++|++|++.|.+.|++++.+++.++.++.+++.+|.++.+ ++ +|+++++..
T Consensus 3 ~~~~s~~~~v~nl~~ti~GaGIl~~P~afk~~Giv~gi~li~~~a~~s~~sl~~l~~~a~~~~----~~--ty~~l~~~~ 76 (411)
T KOG1305|consen 3 SGKTSFRSAVFNLVNTIMGAGILAMPYAFKTAGLLLGILLIVLSAFLSLLSLYLLSKCAKKSG----ER--TYSSLGDLI 76 (411)
T ss_pred CCccchhhhHHHHHhhhhccHHHHhHHHHHHhcHHHHHHHHHHHHHHHHhHHHHHHHhhhhcC----CC--CHHHHHHHH
Confidence 345578899999999999999999999999999999999999999999999999999988633 33 999999999
Q ss_pred hCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccch-hhHHHHHHHHhhccCCCcchhhH
Q 010376 139 LGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNG-YMITFGIIEVLFSQIPDFDQVWW 217 (512)
Q Consensus 139 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~pl~~~~~l~~l~~ 217 (512)
+|+.++....+.......| |++|+++++|.+..+............. ...++. +.+....++.||++.|+++++++
T Consensus 77 ~g~~g~~~~~v~~~~~~~g-~i~yliiigd~~p~~~~~~~~~~~~~~~--~~~~~~~ill~~~~~i~pLsl~k~l~~Lk~ 153 (411)
T KOG1305|consen 77 FGKLGKVDAAVAVKCFGVG-MVSYLIIIGDLLPGFIRSLFLDEEGGSH--YLDRNFLILLVLLFIILPLSLLKNLDSLKY 153 (411)
T ss_pred cCCCceeeehhhHHhhhcc-ceEEEEEEccccchhhhhcccccccccc--cccceeEeehHHHHHHHHHHHHHhhhhHHH
Confidence 9999977777777777777 7999999999999777543211111000 122333 46677889999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhh
Q 010376 218 LSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDT 297 (512)
Q Consensus 218 ~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~e 297 (512)
.|.++.++++.+.++++...+..........+. .+....+++.+.++|++.|||.||.++.++++|
T Consensus 154 tS~~s~~~~~~fv~~vv~~~~~~~~~~~~~~~~--------------~~~~~~~~~~~~~~pi~~faf~Ch~n~~~i~~E 219 (411)
T KOG1305|consen 154 TSALSLASVVYFVVLVVYKYFQGPCALGRLSYL--------------VPNLSSFSSLFYALPIFVFAFTCHSNVFPIYNE 219 (411)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhcccccCCcccc--------------cCCcchhhhhhhhhhhhheeeeccccceeeeee
Confidence 999999998865555544333211100000000 111122258999999999999999999999999
Q ss_pred cCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCCh----HHHHHHHHHHHHHHHHhhhhh
Q 010376 298 IRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPY----WLIDIANAAIVVHLVGAYQVF 373 (512)
Q Consensus 298 m~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~----~~~~i~~~~~~i~~~~s~pl~ 373 (512)
||||++ +++.++...+...++++|..+|.+||+.||+.+.+|++.+++..... +....++..+.++++.++|+.
T Consensus 220 l~~~s~--~~i~~v~~~~~~~~~~iy~~~g~~GYL~Fg~~v~~n~l~~~~~~~~~~l~~~~~~~vr~~~~~~~~l~~pi~ 297 (411)
T KOG1305|consen 220 LKDRSV--KKIQRVSNIAIILATLIYLLTGLFGYLTFGDLVKGNLLHNYDSILNNLLRSFPLLCVRLRIAVAVLLTFPIV 297 (411)
T ss_pred eeCchH--HHHHHHHHHHHHHHHHHHHHHHHhhhheecccchHHHHhcCCcccchhHhhhhHHHHHHHHHHHHHHHHHHH
Confidence 999986 89999999999999999999999999999999999999998732222 246789999999999999999
Q ss_pred ccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhhh
Q 010376 374 CQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTV 453 (512)
Q Consensus 374 ~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~f 453 (512)
.+|+|..+.+.+.+..++. + +....++++++..++..+.+.|+++||++++++++||+++..++|
T Consensus 298 ~fPlr~~l~~~~~~~~~~~----~-----------~~s~~r~~~itl~ll~~~~l~ai~~p~i~~i~~~vGAT~~~~i~F 362 (411)
T KOG1305|consen 298 LFPLRMNLDELLFPYQPGL----T-----------SFSGKRHFVITLLLLIFTFLLAIFVPSIGTIFGFVGATSSTSISF 362 (411)
T ss_pred hchHHHHHHHHhcccCCCC----C-----------CccceehhHHHHHHHHHHHHHHHHhccHHHHHHHhhhhhhhhhHH
Confidence 9999999988876554431 1 111255678999999999999999999999999999999999999
Q ss_pred hhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010376 454 YFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVL 500 (512)
Q Consensus 454 i~P~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~i~~ 500 (512)
++|+++|++..|. +.++....+...++++.+.++|+..-+.++..
T Consensus 363 I~P~~~yl~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~i~~~~~ 407 (411)
T KOG1305|consen 363 ILPALYYLKASKK--KSREPLGALIFLILGVLLSIIGVAVMIYDLLA 407 (411)
T ss_pred HHHHHhhheeecc--ccccchHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 9999999998886 33344555666677777777777776666654
No 7
>KOG4303 consensus Vesicular inhibitory amino acid transporter [Amino acid transport and metabolism; Signal transduction mechanisms]
Probab=100.00 E-value=4.7e-44 Score=330.49 Aligned_cols=411 Identities=17% Similarity=0.200 Sum_probs=339.5
Q ss_pred CCcccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCC---CCcccccH
Q 010376 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPV---TGQRNYTY 131 (512)
Q Consensus 55 ~~~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~---~~~~~~~y 131 (512)
+++.+.+.+-+++..|+.|++-|.=++++|+|....||+ ++..++.++.+|+||..++++|..+.++. ...| .+|
T Consensus 110 ~Ge~~~kI~a~qAaWNVTNAIQGMFivgLP~AvlhGGyw-~i~amvg~A~vCcyTGk~Li~CLYE~~~dGevVrvR-dsY 187 (524)
T KOG4303|consen 110 HGEASEKISALQAAWNVTNAIQGMFIVGLPIAVLHGGYW-SIGAMVGVAYVCCYTGKLLIECLYENGEDGEVVRVR-DSY 187 (524)
T ss_pred CCCCCCccHHHHHhhhhhhhhheeeEeccceeeeEcchh-HHHHHHhhhhhhhccchhhhhhhccCCCCCcEEEee-hhH
Confidence 355667889999999999999999999999999999998 89999999999999999999999876541 1233 599
Q ss_pred HHHHHHhhCC-cceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCC
Q 010376 132 MDAVKANLGG-KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIP 210 (512)
Q Consensus 132 ~~l~~~~~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 210 (512)
..++..+++| .|+..+.+.+.+.+..+|+.|++..+|.++.-++. ...+..-|+++..+.++|..+++
T Consensus 188 vaIA~~C~~P~lGgr~V~~AQliELlmTCIlYvVv~gdLl~~~fP~-----------~svd~~sWm~i~~a~LLpc~FLk 256 (524)
T KOG4303|consen 188 VAIADFCYKPGLGGRWVLAAQLIELLMTCILYVVVAGDLLQSCFPG-----------LSVDKASWMMITSASLLPCSFLK 256 (524)
T ss_pred HHHHHHhcCCCcchheeeHHHHHHHHHHHHhhhheechhhhccCCC-----------CCccccchhhhhhHHHhhhHHHH
Confidence 9999998887 45599999999999999999999999999987652 14566789999999999999999
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchh
Q 010376 211 DFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSII 290 (512)
Q Consensus 211 ~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~ 290 (512)
+++-++.+|++..+.-++.-++++.+++...-+ - .|+ +++...+..+++..+|+++|+|..|..
T Consensus 257 ~Lk~VS~lSf~ct~sH~viN~i~v~YCLs~~~d-W---------~ws------kv~Fsidi~~fPisvG~iVFsYTSqIF 320 (524)
T KOG4303|consen 257 DLKIVSRLSFFCTISHLVINLIMVLYCLSFVSD-W---------SWS------KVTFSIDINTFPISVGMIVFSYTSQIF 320 (524)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh-c---------cce------eEEEEEEcccCceEEEEEEEeeeceee
Confidence 888888888877777776666666555543311 1 111 133334445788899999999999999
Q ss_pred hHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhh
Q 010376 291 LLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAY 370 (512)
Q Consensus 291 i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~ 370 (512)
+|++..+|+|| .++...+-++-+.+.++-..+|.+||++|++.++..|++|+| ..-...++++++++.-+.+|
T Consensus 321 LP~LEGNM~~p----s~Fn~Ml~WsHIAAaVfK~~Fg~~~fLTf~~~TqevItnnLp---~qsfk~~VN~fLV~KALLSY 393 (524)
T KOG4303|consen 321 LPNLEGNMKNP----SQFNVMLKWSHIAAAVFKVVFGMLGFLTFGELTQEVITNNLP---NQSFKILVNLFLVVKALLSY 393 (524)
T ss_pred ccccccccCCh----hHheeeeehHHHHHHHHHHHHHHheeeeechhhHHHHhcCCC---ccchhhhhhHHHHHHHHHcC
Confidence 99999999999 688888999999999999999999999999999999999987 22346789999999999999
Q ss_pred hhhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhh
Q 010376 371 QVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWP 450 (512)
Q Consensus 371 pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~ 450 (512)
|+-.+...+.+|+-+.+..|+.+|- .-++.+ ++ .+-+-+.+|..+++.+.++|+++|+|..+++++|++.|++
T Consensus 394 PLPfyAAvelLe~nlF~g~p~t~Fp-scys~D----g~--Lk~WgltlR~~lvvfTllmAi~vPhf~~LMGl~Gs~TGtm 466 (524)
T KOG4303|consen 394 PLPFYAAVELLENNLFLGYPQTPFP-SCYSPD----GS--LKEWGLTLRIILVVFTLLMAISVPHFVELMGLVGSITGTM 466 (524)
T ss_pred CchHHHHHHHHHHhhhcCCCCCCCc-eeeCCC----cc--hhhheeeeeeHHHHHHHHHHHHhHHHHHHHHhhccccccc
Confidence 9999999999999887766664431 111100 11 1122346789999999999999999999999999999999
Q ss_pred hhhhhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccCC
Q 010376 451 LTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAGVVLDLKTYKPF 508 (512)
Q Consensus 451 l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~i~~~~~~~~~f 508 (512)
++|+.|++||++++.+.....+......+++.|..+++-|.|-|-.++++++....+|
T Consensus 467 LsFiwP~lFHl~ik~~~L~~~e~~fD~~Ii~~G~~~~vsG~y~S~~~Li~A~~~~~~~ 524 (524)
T KOG4303|consen 467 LSFIWPALFHLYIKEKTLNNFEKRFDQGIIIMGCSVCVSGVYFSSMELIRAINSADSD 524 (524)
T ss_pred HHHHHHHHHHHHHHHHhhhhHHHhhheeEEEEeeeEEEEeEehhhHHHHHHHhccCCC
Confidence 9999999999999887666666677778888899999999999999999999887654
No 8
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.9e-31 Score=268.18 Aligned_cols=387 Identities=17% Similarity=0.166 Sum_probs=279.4
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
.+++.+..++++++.++++|+|+|++|++++..|++++++++++.|.+++++.+++.|+..+.+.. ..+|.+++++
T Consensus 5 ~~~~~s~~~~vl~l~gT~IGAGvL~lP~a~~~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~----~~~~~~~~~~ 80 (415)
T COG0814 5 MKKTSSDLGGVLILAGTAIGAGVLFLPVAFGGGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNG----KASITSLVED 80 (415)
T ss_pred ccCCcchHHHHHHHHccccccchhhhhHHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCC----cccHHHHHHH
Confidence 344566889999999999999999999999999999999999999999999999999999875431 1389999999
Q ss_pred hhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhH
Q 010376 138 NLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWW 217 (512)
Q Consensus 138 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 217 (512)
.+||+++++.++.+.+.+++.+.+|.+..+|.++.++++..... ..++....+++..++.++++.++...++.
T Consensus 81 ~~G~~~~~li~~s~~~~~~~~~~aY~~~~g~~l~~~~~~~~~~~-------~~~r~~~~lif~~~~~~l~~~~~~~~lk~ 153 (415)
T COG0814 81 YLGKKGGILIGLSYFFALYGLLVAYIVGIGNLLASFLGNQFGLN-------PLPRKLGSLIFALVLAFLSWLGTLAVLKI 153 (415)
T ss_pred HhCcchHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHhhcccC-------CcchHHHHHHHHHHHHHHHHhchhHHHHH
Confidence 99999999999999999999999999999999999997532110 15667777888888888999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccc-hhhHHHHHHHHHHHHHHhccchhhHhHHh
Q 010376 218 LSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTG-TQKLWRSLQALGAIAFAYSFSIILLEIQD 296 (512)
Q Consensus 218 ~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 296 (512)
.+.+....++...++... ..... +.+. ...+ ++. +..+.....++|++.|||.||+++|++.+
T Consensus 154 ts~l~~~~v~~~~~l~~~----~~~~~---~~~~-l~~~--------~~~~~~~~~~~~~~ipv~vfsF~~h~~i~si~~ 217 (415)
T COG0814 154 TSLLVFGKVIYLVLLVVY----LIPHW---NPAN-LFAL--------PSASQSFWKYLLLAIPVFVFSFGFHGNIPSLVN 217 (415)
T ss_pred HHHHHHHHHHHHHHHHHH----Hhccc---CHHH-Hhcc--------cccchhhHHHHHHHhhHHHhhhhCCccchHHHH
Confidence 999888887643333322 12110 0000 0000 011 24555788999999999999999999999
Q ss_pred hcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChH-------------HHHHHHHHHH
Q 010376 297 TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYW-------------LIDIANAAIV 363 (512)
Q Consensus 297 em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~-------------~~~i~~~~~~ 363 (512)
|||++++ ++.+|++.++..+..++|+.+++++|..+|+.++++++.+.+ +.+. .....+++..
T Consensus 218 ~~~~~~~--~~~~k~~~~~~~~~~vlyi~~~~~~~~~~~~~~~~~il~~~~--~~~~~l~~~~~~~~~~~~~~~~~~f~~ 293 (415)
T COG0814 218 YMRKNSK--KAVRKAILIGSLIALVLYILVGFFVFGCFGSLVFGNILAAKE--QNISLLSALAGVINSPILSIALNIFAL 293 (415)
T ss_pred Hhccchh--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccHHHHHHccC--chHHHHHHHHHhhcchHHHHHHHHHHH
Confidence 9999863 349999999999999999999999999999999999999875 2221 2223333333
Q ss_pred HHHHHhhhhhccchHHHHHHHhhccCCCCcccccccccCCCCccccch-hHHHHHHHHHHHHHHHHHHHhccchHHHHHH
Q 010376 364 VHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQL-NLFRLVWRTLFVVLTTLISMLLPFFNDVVGI 442 (512)
Q Consensus 364 i~~~~s~pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~-~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l 442 (512)
+.+.++|--.....++.+++.+.+ .++ .+ +|... ...........+.....++...|+.+.+++.
T Consensus 294 ~Ai~tSFlgv~lg~~~~~~~~~~~--~~~----------~~--~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~ 359 (415)
T COG0814 294 FAIATSFLGVYLGLFEGLADLFKK--SNS----------KP--GRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIAT 359 (415)
T ss_pred HHHHHHHhCchhhHHHhhhHHHHh--ccC----------cc--cchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHH
Confidence 333333322222333444443321 010 00 01111 1223334455556678888889999999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHHH
Q 010376 443 LGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLV 489 (512)
Q Consensus 443 ~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 489 (512)
+|+.....+.++.|...+.|....++.+.++.....+.++|++..+.
T Consensus 360 iga~i~~~ll~~~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~ 406 (415)
T COG0814 360 IGAPIIPALLFIKPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILS 406 (415)
T ss_pred HHHHHHHHHHHHHHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHH
Confidence 99999999999999999988765444332222334444445444333
No 9
>PRK10483 tryptophan permease; Provisional
Probab=99.95 E-value=5.6e-25 Score=219.32 Aligned_cols=355 Identities=13% Similarity=0.103 Sum_probs=255.2
Q ss_pred cccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
.++++++.+++++.+.+++||+|+|++|.+.++.|+.+++++++++|.+..||+.++.|...+.+. +.++..++|
T Consensus 6 ~~~~~~~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~~-----g~~~~tma~ 80 (414)
T PRK10483 6 TTQTSPSLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYRI-----GSSFDTITK 80 (414)
T ss_pred cccCCCcHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHH
Confidence 456678899999999999999999999999999999999999999999999999999999875432 248999999
Q ss_pred HhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhh
Q 010376 137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVW 216 (512)
Q Consensus 137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 216 (512)
+.+||+|+.+..++..+..++.+++|+...++.++..++.. ..+.++..-.+++.++.-.+.+. ..+.+.
T Consensus 81 ~~LG~~g~~i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~---------~~~i~~~~~~llF~~~~~~iv~~-gt~~vd 150 (414)
T PRK10483 81 DLLGKGWNVVNGISIAFVLYILTYAYISASGSILHHTFAEM---------SLNVPARAAGFGFALLVAFVVWL-STKAVS 150 (414)
T ss_pred HHcChHHHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhc---------CCCCcHHHHHHHHHHHHHHHHHh-hhhHHH
Confidence 99999999999999999999999999999999999988631 01223334445555555555554 346666
Q ss_pred HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHh
Q 010376 217 WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQD 296 (512)
Q Consensus 217 ~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~ 296 (512)
+.+.+-....+..+++.+.....+...++..+.+ + .....+...+.++|++++||..|+++|++.+
T Consensus 151 ~~n~~l~~~~i~~f~~~~~~l~~~i~~~~L~~~~-----~---------~~~~~~~~~~~alPvl~~SFgfh~iIPsl~~ 216 (414)
T PRK10483 151 RMTAIVLGAKVITFFLTFGSLLGHVQPATLFNVA-----E---------SNASYAPYLLMTLPFCLASFGYHGNVPSLMK 216 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhhcCHHHHhccc-----c---------ccchhHHHHHHHHHHHHhhccCCCcchHHHH
Confidence 6665555554433333332222221111101100 0 0111233577999999999999999999999
Q ss_pred hcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC-----------CCCCcccccccc-cCCChHHHHHHHHHHHH
Q 010376 297 TIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG-----------DLAPNNLLTGFG-FYNPYWLIDIANAAIVV 364 (512)
Q Consensus 297 em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg-----------~~~~~~il~~~~-~~~~~~~~~i~~~~~~i 364 (512)
.+++.. +|.+|++..+..+..++|++.=......-+ +++ +..+..+. ..+..+...+..++..+
T Consensus 217 y~~~d~---~kir~~I~iGs~Iplv~yl~W~~~~lg~l~~~~~~~~~~~~~ni-~~L~~~l~~~~~~~~i~~~~~~Fa~~ 292 (414)
T PRK10483 217 YYGKDP---KTIVKCLVYGTLMALALYTIWLLATMGNIPRPEFIGIAEKGGNI-DVLVQALSGVLNSRSLDLLLVVFSNF 292 (414)
T ss_pred HhCcCH---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCh-HHHHHHHHHhcCChHHHHHHHHHHHH
Confidence 998654 799999999999999999973333333222 211 11112111 01234556778888899
Q ss_pred HHHHhhhhhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHh
Q 010376 365 HLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGIL 443 (512)
Q Consensus 365 ~~~~s~pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~ 443 (512)
.+.+||-=....+++.+.+.+.. +++ + ..|...-...+++++++|.+.|+ |-..+++.
T Consensus 293 Ai~TSFlGv~LGL~d~l~D~~k~--~~~----~---------------~~r~~~~~ltflPPl~~al~~P~~Fl~AL~yA 351 (414)
T PRK10483 293 AVASSFLGVTLGLFDYLADLFGF--DDS----A---------------MGRFKTALLTFLPPVVGGLLFPNGFLYAIGYA 351 (414)
T ss_pred HHHHHHHHHHHHHHHHHHHHhCC--CCc----c---------------ccceeeehhhHhhHHHHHHHhHHHHHHHHHHH
Confidence 99999977777888999887632 221 0 01122344567899999999998 89999999
Q ss_pred hhhhhhhhhhhhhhhhhhhhccC
Q 010376 444 GAMGFWPLTVYFPIEMYKAQKKI 466 (512)
Q Consensus 444 Ga~~~~~l~fi~P~~~~l~~~~~ 466 (512)
|.. +.++.-++|+++.+|.||+
T Consensus 352 G~~-~~il~~ilP~lM~~~~Rk~ 373 (414)
T PRK10483 352 GLA-ATIWAAIVPALLARASRKR 373 (414)
T ss_pred HHH-HHHHHHHHHHHHHHHHHhc
Confidence 965 7778899999999998875
No 10
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=99.94 E-value=2.5e-24 Score=217.06 Aligned_cols=352 Identities=17% Similarity=0.183 Sum_probs=250.5
Q ss_pred cccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhC
Q 010376 61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (512)
Q Consensus 61 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 140 (512)
+.+.+++++.+.++++|+|+|++|.+.+..|+.+++++++++|.++.++.+++.|...+.++ ..+|.+++++.+|
T Consensus 2 ~~~~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~-----~~~~~~~a~~~lG 76 (394)
T PF03222_consen 2 NNSILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPE-----GSSLTSMAEKYLG 76 (394)
T ss_pred CchHHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhC
Confidence 45688999999999999999999999999999999999999999999999999998875432 2499999999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHH
Q 010376 141 GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSI 220 (512)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 220 (512)
|+++++..+...+..++.+++|....++.++.+++... ..+.++....+++.++...+... ..+.+.+.+.
T Consensus 77 ~~g~~~~~~~~~~~~y~ll~AYisg~g~~~~~~l~~~~--------~~~~~~~~~~~~f~~i~~~iv~~-g~~~v~~~n~ 147 (394)
T PF03222_consen 77 KKGGIVIGISYLFLLYALLVAYISGGGSILSSLLGNQL--------GTDLSPWLSSLLFTIIFGGIVYF-GTKAVDRINR 147 (394)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHhc--------CCCCcHHHHHHHHHHHHHHHHHh-hHHHHHHHHH
Confidence 99999999999999999999999999999999987431 11233333334444433333333 3334444444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCC
Q 010376 221 VAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRS 300 (512)
Q Consensus 221 ~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~ 300 (512)
+-+...+..+...+...+.+...+...+ ......++...+.++|++++||..|+.+|++.+.+++
T Consensus 148 ~lv~~~i~~~~~l~~~~~p~~~~~~L~~---------------~~~~~~~~~~~~~~lPv~~~Sf~f~~ivPsl~~~~~~ 212 (394)
T PF03222_consen 148 VLVFGMIISFIILVVYLIPHWNPSNLLD---------------APPSPSDWSYILPALPVLVFSFGFHNIVPSLVKYLGG 212 (394)
T ss_pred HHHHHHHHHHHHHHHHHhhhcCHHHhhc---------------cccccccHHHHHHHHHHHHHHHHHHhhhHHHHHHhCc
Confidence 4443333222222222222111100000 0112234457889999999999999999999999996
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhc-----------CCCCCc--ccccccccCCChHHHHHHHHHHHHHHH
Q 010376 301 PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF-----------GDLAPN--NLLTGFGFYNPYWLIDIANAAIVVHLV 367 (512)
Q Consensus 301 p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~f-----------g~~~~~--~il~~~~~~~~~~~~~i~~~~~~i~~~ 367 (512)
.. ||.+|++..+..+..++|++.-...-..- +++..+ ..+.+. .+..+...+..++-.+.+.
T Consensus 213 d~---~k~~~ai~~Gs~i~lv~yl~w~~~~lg~l~~~~~~~~~~~~~~~~~~~~~~~~~--~~s~~i~~~~~~fa~~Ai~ 287 (394)
T PF03222_consen 213 DP---KKIRKAIIIGSLIPLVMYLLWVFSILGSLPREQFAEAIAQGGNVSALVSALANV--SGSPWISILGSIFAFFAIA 287 (394)
T ss_pred cH---HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhcCCChHHHHHHHHhh--cCCcHHHHHHHHHHHHHHH
Confidence 64 89999999999999999987433322211 111111 112221 1234556788889999999
Q ss_pred HhhhhhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhh
Q 010376 368 GAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAM 446 (512)
Q Consensus 368 ~s~pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~ 446 (512)
+||--....+++.+.+.+.. +++ + ..|........++++++|...|+ |...+++.| .
T Consensus 288 TSFlGv~lgl~d~l~d~~k~--~~~----~---------------~~r~~~~~ltf~ppl~~a~~~p~~F~~al~~aG-~ 345 (394)
T PF03222_consen 288 TSFLGVYLGLFDFLADLFKL--KNN----S---------------SGRLKTWLLTFLPPLIFALLFPNGFLIALGYAG-I 345 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcC--Ccc----c---------------cchHHHHHHHHHhHHHHHHHCcHHHHHHHHhhc-H
Confidence 99977777888888887632 111 0 12233445566789999999997 889999999 9
Q ss_pred hhhhhhhhhhhhhhhhhccCCC
Q 010376 447 GFWPLTVYFPIEMYKAQKKIGR 468 (512)
Q Consensus 447 ~~~~l~fi~P~~~~l~~~~~~~ 468 (512)
..+.+..++|+++.+|.+++++
T Consensus 346 ~~~il~~ilP~~m~~~~r~~~~ 367 (394)
T PF03222_consen 346 GIAILLGILPALMVWKARKRKP 367 (394)
T ss_pred HHHHHHHHHHHHHHHHHHcccC
Confidence 9999999999999999876553
No 11
>PRK09664 tryptophan permease TnaB; Provisional
Probab=99.94 E-value=1.7e-24 Score=215.52 Aligned_cols=353 Identities=16% Similarity=0.080 Sum_probs=249.4
Q ss_pred cHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCc
Q 010376 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (512)
Q Consensus 63 s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 142 (512)
+.+.+++.+.+++||+|+|++|.+.+++|+.+++++++++|.+..||+.++.|+..+.+. +.++..++|+.+||.
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~~-----g~~l~tma~~~LG~~ 84 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYPV-----GSSFNTITKDLIGNT 84 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC-----CCCHHHHHHHHcChH
Confidence 577899999999999999999999999999999999999999999999999999876432 258999999999999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHH
Q 010376 143 KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVA 222 (512)
Q Consensus 143 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 222 (512)
|+.+..+...+..++.+++|+...++.++..++... ..+.+.....++++++...+.+. ..+.+.+.+.+-
T Consensus 85 g~~i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~--------~~~i~~~~~~llF~~~~~~~v~~-gt~~vd~~nr~l 155 (415)
T PRK09664 85 WNIISGITVAFVLYILTYAYISANGAIISETISMNL--------GYHANPRIVGICTAIFVASVLWI-SSLAASRITSLF 155 (415)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhc--------cCCCcHHHHHHHHHHHHHHHHHh-chhHHHHHHHHH
Confidence 999999999999999999999999999999885310 11233333345555555555555 345666665555
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCCCc
Q 010376 223 AIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPP 302 (512)
Q Consensus 223 ~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~ 302 (512)
....+..+++.+.....+.......+.+.. . ........++.++|++.+||..|+++|++.+.+++..
T Consensus 156 ~~~~ii~f~~~~~~l~~~i~~~~L~~~~~~-----~-------~~~~~~~~i~~alPVl~~SFgfh~iIPsl~~y~~~d~ 223 (415)
T PRK09664 156 LGLKIISFVIVFGSFFFQVDYSILRDATST-----T-------AGTSYFPYIFMALPVCLASFGFHGNIPSLIICYGKRK 223 (415)
T ss_pred HHHHHHHHHHHHHHHhhcccHHHHhcCccc-----c-------ccchHHHHHHHHHHHHHHhhhCCCcchHHHHHhCccH
Confidence 544443222222222222211111110000 0 0000122477899999999999999999999998654
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHH--HHhHhh---------hhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhh
Q 010376 303 AEYKTMKKATLFSIIVTTTFYLL--CGCMGY---------AAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQ 371 (512)
Q Consensus 303 ~~~~~~~~~i~~s~~i~~~~Y~~--~g~~gy---------~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~p 371 (512)
|+.+|++..+..+..++|.+ ..+.|- ..-|++++..+..-....+..+...+..++..+.+.+||-
T Consensus 224 ---~~~~kaIl~Gs~IpLviY~~W~~~ilG~lp~~~~~~~~~~g~nv~~l~~s~~~~~~~~~i~~~~~~Fa~~Ai~TSFl 300 (415)
T PRK09664 224 ---DKLIKSVVFGSLLALVIYLFWLYCTMGNIPRESFKAIISSGGNVDSLVKSFLGTKQHGIIEFCLLVFSNLAVASSFF 300 (415)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHcCCCchHHHHHHHhhccChHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999999964 233331 1222222221111111112356677888888999999997
Q ss_pred hhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q 010376 372 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWP 450 (512)
Q Consensus 372 l~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~ 450 (512)
=....+++.+.+.+.. +++ + ..|...-...+++++++|.+.|+ |-..+++.|.. +.+
T Consensus 301 Gv~LGL~D~l~D~~~~--~~~----~---------------~~r~~~~~ltflPPl~~al~~P~gFl~AL~yAG~~-~~i 358 (415)
T PRK09664 301 GVTLGLFDYLADLFKI--DNS----H---------------GGRFKTVLLTFLPPALLYLIFPNGFIYGIGGAGLC-ATI 358 (415)
T ss_pred HHHHHHHHHHHHHhCC--CCc----c---------------ccceeeehhhHhhhHHHHHHhhHHHHHHHHHHHHH-HHH
Confidence 7777888888887632 221 0 01122334567899999999998 99999999985 678
Q ss_pred hhhhhhhhhhhhhccC
Q 010376 451 LTVYFPIEMYKAQKKI 466 (512)
Q Consensus 451 l~fi~P~~~~l~~~~~ 466 (512)
+.-++|+++-+|.||+
T Consensus 359 l~~ilP~lM~~~~Rk~ 374 (415)
T PRK09664 359 WAVIIPAVLAIKARKK 374 (415)
T ss_pred HHHHHHHHHHHHHhcc
Confidence 8999999999998875
No 12
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=99.93 E-value=1.4e-23 Score=210.39 Aligned_cols=348 Identities=14% Similarity=0.145 Sum_probs=246.2
Q ss_pred cHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCc
Q 010376 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (512)
Q Consensus 63 s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 142 (512)
+.+++++.+.++++|+|+|++|.+....|+++++++++++|.+..|+++++.|+..+.+. +.++.+++|+.+||+
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~l~Ev~~~~~~-----~~~~~~~a~~~LG~~ 78 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALLLLEVYQHVPA-----DTGLGTLAKRYLGRY 78 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCC-----CCCHHHHHHHHhChH
Confidence 578899999999999999999999999999999999999999999999999997654321 248999999999999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHH
Q 010376 143 KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVA 222 (512)
Q Consensus 143 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~ 222 (512)
++++..+...+..+..+.+|....++.+.+.+++.... ..+.....+++.++.....+. ..+.+.+.+.+-
T Consensus 79 g~~i~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~--------~i~~~~~~l~F~~~~~~iv~~-g~~~v~~~n~~L 149 (403)
T PRK15132 79 GQWLTGFSMMFLMYALTAAYISGAGELLASSISDWTGI--------SMSPTAGVLLFTLVAGGVVCV-GTSSVDLFNRFL 149 (403)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccC--------CCChHHHHHHHHHHHHHHHhc-cHHHHHHHHHHH
Confidence 99999999999999999999999999998887642110 112223333343333333333 334444444443
Q ss_pred HHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCCCc
Q 010376 223 AIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPP 302 (512)
Q Consensus 223 ~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~ 302 (512)
+...+..++..+...+.+....+ ....+++ . ...+.++|++.+||..|+.+|++.+.+++..
T Consensus 150 ~~~~ii~~~~~~~~l~p~~~~~~-----L~~~~~~-----------~--~~~~~~iPvl~~SFgfh~iIpsl~~y~~~~~ 211 (403)
T PRK15132 150 FSAKIIFLVVMLALMMPHIHKVN-----LLTLPLQ-----------Q--GLALSAIPVIFTSFGFHGSVPSIVSYMGGNI 211 (403)
T ss_pred HHHHHHHHHHHHHHHHHhcCHHH-----HhcCCcc-----------c--cHHHHHHHHHHHHhhCCcccHHHHHHhCcCH
Confidence 33333222222222121111000 0000000 0 1378999999999999999999999998664
Q ss_pred hhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC-----CCc-----ccccccc-cCCChHHHHHHHHHHHHHHHHhhh
Q 010376 303 AEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL-----APN-----NLLTGFG-FYNPYWLIDIANAAIVVHLVGAYQ 371 (512)
Q Consensus 303 ~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~-----~~~-----~il~~~~-~~~~~~~~~i~~~~~~i~~~~s~p 371 (512)
||.+|++..+..+..++|++.=......-+.+ .++ +++..+. ..+..+...++.++..+.+.+||-
T Consensus 212 ---~~~~k~i~~Gs~i~li~yl~W~~~~lg~l~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~fa~~Ai~TSFl 288 (403)
T PRK15132 212 ---RKLRWVFIIGSAIPLVAYIFWQLATLGSIDSTTFMGLLANHAGLNGLLQALREVVASPHVELAVHLFADLALATSFL 288 (403)
T ss_pred ---HHHHHHHHHHHHHHHHHHHHHHHHHHhCCCHHHHHHHHHccCchHHHHHHHHHHccChHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999997555555444422 111 1222221 113356777888888999999997
Q ss_pred hhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhh
Q 010376 372 VFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWP 450 (512)
Q Consensus 372 l~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~ 450 (512)
-....+++.+.+.+.+. ++ + ..|.......+++++++|...|| |....++.|. ..+.
T Consensus 289 Gv~lgl~d~l~d~~~~~--~~----~---------------~~r~~~~~l~flppli~a~~~P~~F~~al~~aG~-~~ai 346 (403)
T PRK15132 289 GVALGLFDYLADLFQRR--NT----V---------------GGRLQTGLITFLPPLAFALFYPRGFVMALGYAGV-ALAV 346 (403)
T ss_pred HHHHHHHHHHHHHHccC--cc----c---------------cCCchhehhhHHHHHHHHHHhHHHHHHHHHHHHH-HHHH
Confidence 77778888888876331 10 0 11234556777899999999997 8889999985 5788
Q ss_pred hhhhhhhhhhhhhccCC
Q 010376 451 LTVYFPIEMYKAQKKIG 467 (512)
Q Consensus 451 l~fi~P~~~~l~~~~~~ 467 (512)
+.+++|+++.+|.++.+
T Consensus 347 l~~ilP~~m~~~~r~~~ 363 (403)
T PRK15132 347 LALLLPSLLVWQSRKQN 363 (403)
T ss_pred HHHHHHHHHHHHHhhcC
Confidence 99999999999987644
No 13
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=99.93 E-value=7.3e-24 Score=215.49 Aligned_cols=346 Identities=15% Similarity=0.113 Sum_probs=247.3
Q ss_pred HHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceee
Q 010376 67 TSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIF 146 (512)
Q Consensus 67 a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 146 (512)
++..++++++|+|+|++|..+++.|...+++.+++.|+++.+++.++.|+..+.+. ..++.+++++.|||+++++
T Consensus 2 ~~~lv~gt~IGaGIl~lP~~~a~~g~~~~~~~~i~~~~~~~~~~l~~~el~~~~p~-----~~~~~~~~~~~~G~~~g~~ 76 (381)
T TIGR00837 2 GALIIAGTTIGAGMLALPTSTAGAWFIWTLLLLILLWFLMLHSGLLLLEVYLTYPG-----GASFNTIAKDLLGKTGNII 76 (381)
T ss_pred ceEEeehhhHhHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-----CCCHHHHHHHHhCHHHHHH
Confidence 34567899999999999999999998889999999999999999999999876432 1389999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHHHHHH
Q 010376 147 CGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMS 226 (512)
Q Consensus 147 ~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~ 226 (512)
..+...+.++..+.+|.+..++.+..+++.... . ..+.....++..+++.++. .+..+...+++.+.+...
T Consensus 77 ~~~~~~~~~~~~~~ay~~~~~~~l~~~~~~~~~------~--~~~~~~~~~~~~~v~~~l~-~~G~~~~~~v~~i~~~~~ 147 (381)
T TIGR00837 77 AGLSLLFVLYILTYAYISGGGSILSRLIGEYFG------F--PWSARAIVLIFTVLFGSFV-WLSTSAVDRITRVLIFGK 147 (381)
T ss_pred HHHHHHHHHHHHHHHHHHccHHHHHHHHHHhcC------C--CccHHHHHHHHHHHHHHHH-HhchhHHHHHHHHHHHHH
Confidence 999999999999999999999999988763110 0 1222233333333344443 345667777776666665
Q ss_pred HHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCCCchhhh
Q 010376 227 FTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYK 306 (512)
Q Consensus 227 ~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~ 306 (512)
+..+++.+..++.+...++ . .+ . + . ....+.++..+++...++|.+|.+++++.+|+++++ |
T Consensus 148 l~~l~~~ii~~~~~~~~~~-~---~~-~--~-------~-~~~~~~~~~~a~~~~~~~fg~~~~i~~~~~~~~~~~---k 209 (381)
T TIGR00837 148 IIAFALVFSGLLPHVKGDL-L---LD-V--A-------L-DTSYWPYILSALPVCLTSFGFHGNVPSLYKYYDGNV---K 209 (381)
T ss_pred HHHHHHHHHHHHhhccHHH-H---hc-C--c-------c-ccccHHHHHHHHHHHHHHHHcccccHHHHHHhccCH---H
Confidence 5433333333332211100 0 00 0 0 0 011233677899999999999999999999998664 8
Q ss_pred hhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCC----------cccccccc-cCCChHHHHHHHHHHHHHHHHhhhhhcc
Q 010376 307 TMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP----------NNLLTGFG-FYNPYWLIDIANAAIVVHLVGAYQVFCQ 375 (512)
Q Consensus 307 ~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~----------~~il~~~~-~~~~~~~~~i~~~~~~i~~~~s~pl~~~ 375 (512)
|.+|++..+..+++++|+++.......++.+.- ++....+. ..+..+...+..++..+.+++++.-...
T Consensus 210 ~i~raii~g~~i~~~lY~l~~~~~~g~~~~~~l~~~~~~~~~~~~l~~~~~~~~~~~~~~~~v~~~~~~al~tS~~g~~l 289 (381)
T TIGR00837 210 KVKKSILIGSAIALVLYILWQLATMGNLPRSEFLPIIAKGGNLDGLVNALQGVLKSSAIELALELFSNFALASSFLGVTL 289 (381)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHcCCChHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999999999999887766666553311 11111111 0123455677888888999999988888
Q ss_pred chHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchH-HHHHHhhhhhhhhhhhh
Q 010376 376 PLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFN-DVVGILGAMGFWPLTVY 454 (512)
Q Consensus 376 p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~-~i~~l~Ga~~~~~l~fi 454 (512)
..++.+.+.+.+. + ++ ..|+.......+++.++|.+.|+.. ..++..| ++++++.++
T Consensus 290 ~~~d~l~~~~~~~--~----~~---------------~~~~~~~~~~~~~pl~~a~~~p~~~~~~l~~~G-~~~~~~~~~ 347 (381)
T TIGR00837 290 GLFDYLADLFKFD--D----SK---------------KGRFKTGLLTFLPPLVFALFYPEGFLYAIGYAG-LAATIWAVI 347 (381)
T ss_pred HHHHHHHHHhCCC--c----cc---------------CCCchhhhhhHHhHHHHHHHhhHHHHHHHHHHH-HHHHHHHHH
Confidence 8888887766331 1 01 0123455666688999999999866 9999999 889999999
Q ss_pred hhhhhhhhhccC
Q 010376 455 FPIEMYKAQKKI 466 (512)
Q Consensus 455 ~P~~~~l~~~~~ 466 (512)
+|+++++|.+|+
T Consensus 348 ~p~l~~~~~r~~ 359 (381)
T TIGR00837 348 IPALLAWKARKK 359 (381)
T ss_pred HHHHHHHHHHhc
Confidence 999999997764
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=99.88 E-value=7.5e-20 Score=182.43 Aligned_cols=395 Identities=12% Similarity=0.070 Sum_probs=257.2
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCccee
Q 010376 66 TTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVI 145 (512)
Q Consensus 66 ~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 145 (512)
.-+..+.++.+|+|+|++|-.....|++++++++++.+.+++++.+.+.|.....++ +..++.+++++.|||+++.
T Consensus 23 ~W~l~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~----~~~~i~~v~~~~lG~~g~~ 98 (443)
T PRK13629 23 TWTLGLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSN----PSGNITETVEEHFGKTGGV 98 (443)
T ss_pred hHHHHHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC----CCCCHHHHHHHHcChhHHH
Confidence 345899999999999999999999999999999999999999999999998765321 1249999999999999999
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHHHHH
Q 010376 146 FCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIM 225 (512)
Q Consensus 146 ~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~ 225 (512)
+..+...+..+..+.+|...+.+.+..++.+.. +. . ..++....+++.+++...... .-+.+-+++.+-+..
T Consensus 99 i~~ilYff~ly~ll~aY~~~itn~l~sfl~~ql-~~----~--~~~r~l~slifv~~l~~iv~~-G~~~v~kv~~~Lv~~ 170 (443)
T PRK13629 99 VITFLYFFAICPLLWIYGVTITNTFMTFWENQL-GF----A--PLNRGFVALFLLLLMAFVIWF-GKDLMVKVMSYLVWP 170 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc-Cc----C--CccHHHHHHHHHHHHHHHHHh-hHHHHHHHHHHHHHH
Confidence 999999999999999999999988888654321 10 0 123333334444444443333 334444444333333
Q ss_pred HHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCC-----
Q 010376 226 SFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRS----- 300 (512)
Q Consensus 226 ~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~----- 300 (512)
.+..++......+.+....+-.+.+.+.. ++ ..........+.++|+++|||..|+++|++...+|+
T Consensus 171 ~i~~l~~l~~~LiP~w~~~~L~~~~~~~~---~~-----~~~~~~~~~l~~~iPv~v~SF~f~~iIssl~~y~r~~y~~~ 242 (443)
T PRK13629 171 FIASLVLISLSLIPYWNSAVIDQVDLGSL---SL-----TGHDGILVTVWLGISIMVFSFNFSPIVSSFVVSKREEYEKD 242 (443)
T ss_pred HHHHHHHHHHHHHHHcCHHHHhcCccccc---cc-----cccccHHHHHHHHHHHHHHHHhccccchHHHHHHHHHhccc
Confidence 32222222212121111110000000000 00 000011135779999999999999999999999432
Q ss_pred --CchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCC-----Cccc--ccccc--cCC---C-----hHHHHHHHHH
Q 010376 301 --PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNNL--LTGFG--FYN---P-----YWLIDIANAA 361 (512)
Q Consensus 301 --p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~-----~~~i--l~~~~--~~~---~-----~~~~~i~~~~ 361 (512)
+....+|.+|++..+..+..++|++.-+.+-..-+++. +.|. +..+- .++ . .+...+..++
T Consensus 243 ~~~~~a~~k~~rii~~gs~i~lv~y~fwv~S~~gsLs~~~l~~a~~qn~s~Ls~La~~~~~~~~~~~~~~~~i~~~~~if 322 (443)
T PRK13629 243 FGRDFTERKCSQIISRASMLMVAVVMFFAFSCLFTLSPQNMAEAKAQNIPVLSYLANHFASMTGTKSTFAITLEYAASII 322 (443)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCHHHHHHHHHhCCcHHHHHHHHhhhcccccccchhHHHHHHHHH
Confidence 22123899999999999999999987777776665431 1222 11110 111 1 3456677777
Q ss_pred HHHHHHHhhhhhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHH
Q 010376 362 IVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVG 441 (512)
Q Consensus 362 ~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~ 441 (512)
..+.+.+||--....++|.++..+.+...+. .++ +.+.+..+.....++++.++.+|..-|++-.+++
T Consensus 323 a~~AI~TSFlGv~LGl~E~l~gl~~~~~~~~--~~~----------~~~~~~~~~~~~~~~~~~~w~~~~~np~il~~i~ 390 (443)
T PRK13629 323 ALVAIFKSFFGHYLGTLEGLNGLILKFGYKG--DKT----------KVSLGKLNTISMIFIMGSTWVVAYANPNILDLIE 390 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc--ccc----------ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHH
Confidence 8889999997777789999998874310010 001 1122345566777888899999999999999999
Q ss_pred HhhhhhhhhhhhhhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010376 442 ILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAAIGSVAG 497 (512)
Q Consensus 442 l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~si~~ 497 (512)
-+|+-..+.+.|++|....+|...-++.|.+. .+.+.++.|+....+.+++
T Consensus 391 ~~~gPiia~il~l~P~y~i~kvp~l~~yr~~~-----~n~fv~~~Gl~~i~~~~~~ 441 (443)
T PRK13629 391 AMGAPIIASLLCLLPMYAIRKAPSLAKYRGRL-----DNVFVTVIGLLTILNIVYK 441 (443)
T ss_pred HhhhHHHHHHHHHHHHHHHHccHHHHHhCCCc-----hhHHHHHHHHHHHHHHHHh
Confidence 88888888899999999888864433322211 1344445555555444444
No 15
>KOG1287 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.86 E-value=2.2e-20 Score=186.29 Aligned_cols=369 Identities=14% Similarity=0.132 Sum_probs=236.8
Q ss_pred CCCcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhC-hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 010376 54 DDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLG-WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTY 131 (512)
Q Consensus 54 ~~~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G-~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y 131 (512)
++.+.+|+.+.+.+++.++++++|+|++..|.+ .+++| ...++++.++.++++...+++.+|.- ....+++.+|
T Consensus 6 ~~~~~~kkigll~~v~livg~iIGsGIFvsp~~Vl~~~gsvg~sL~iWv~~gi~s~~galcyaELG----T~ipksGgd~ 81 (479)
T KOG1287|consen 6 EEVQLKKKIGLLSGVSLIVGNIIGSGIFVSPKGVLANTGSVGLSLIIWVFCGIISIIGALCYAELG----TSIPKSGGDY 81 (479)
T ss_pred ccccccceeeeecceeEEEEeeEecccccCcHHHHHcCCchhHHHHHHHHHHHHHHHHHHHHHHHh----ccccCCCcch
Confidence 345567889999999999999999999999999 55666 23445555555666666666666554 3344555689
Q ss_pred HHHHHHhhCCcceeehHHHHHHHHHHHH-HHHHHHHhhh-HHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccC
Q 010376 132 MDAVKANLGGKKVIFCGLIQYLNLFGVA-IGYTIAASVS-MMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI 209 (512)
Q Consensus 132 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~-i~y~i~~~~~-l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 209 (512)
.++.+. ||+..++...|..++...... ..+.+..+++ ++++++ .|..++....++.++++..+..+
T Consensus 82 ayi~~a-fg~~~aF~~~wvs~l~~~p~~~Ai~altF~~Y~l~p~fp-----------~c~~p~~~~~lla~~~l~~lt~~ 149 (479)
T KOG1287|consen 82 AYISEA-FGPFPAFLFLWVSLLIIVPTSAAIIALTFATYLLKPFFP-----------LCDVPRVASKLLAAALLVLLTLI 149 (479)
T ss_pred hhHHHH-hccchhHHHHHHHHHHHhhhHHHHHHHHHHHHhhcccCC-----------CCCCchHHHHHHHHHHHHHHHHH
Confidence 999887 999999999998887775554 6666666665 777663 35666656666666666666555
Q ss_pred CCcchhhHHHHHHHHHHH---HHHHHHHhhhhhhhhcCCCCCC--C-ccccccccccCCCcccchhhHHHHHHHHHHHHH
Q 010376 210 PDFDQVWWLSIVAAIMSF---TYSTAGLGLGIGKVAGNRSFKG--S-LTGISIGTLTSAGTVTGTQKLWRSLQALGAIAF 283 (512)
Q Consensus 210 ~~l~~l~~~s~~~~~~~~---~~~~iii~~~i~~~~~~~~~~~--~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~f 283 (512)
|..++++.+.++.++++ ..+.++++.+++....+...+. + .++.++ +..++..++....|
T Consensus 150 -n~~~V~~a~~vq~~ft~~Kl~al~lIii~G~~~~~~g~~~~~~~~~f~g~~~-------------~~g~i~lafysglf 215 (479)
T KOG1287|consen 150 -NSFSVKWATRVQIVFTIAKLLALLLIIITGLYLLFWGSTQNFENSEFEGSDT-------------DVGNIALAFYSGLF 215 (479)
T ss_pred -hhhhhhHHHHHHHHHHHHHHHHHHHHHHhchheeEecccccccccccccCcC-------------chHHHHHHHHHhhh
Confidence 88888888888887776 4455566666665544432211 1 222222 22368899999999
Q ss_pred HhccchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccc------cc-cCCChHHHH
Q 010376 284 AYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTG------FG-FYNPYWLID 356 (512)
Q Consensus 284 af~~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~------~~-~~~~~~~~~ 356 (512)
||.|++.+..+.+|+|||. |++|+++.+|+.+++++|+++=+..+.+-.. +.++.+ |. .....+. .
T Consensus 216 a~~GWd~lN~vteEiknP~---ktLP~Ai~isi~lvt~iYil~NvAy~~vls~---~e~l~S~aVav~Fa~~~~G~~~-~ 288 (479)
T KOG1287|consen 216 AFSGWDYLNYVTEEIKNPR---RTLPRAILISIPLVTVIYVLVNVAYFTVLSP---DEILSSDAVAVTFADRILGVFA-W 288 (479)
T ss_pred cccCchhhccchHhhcCcc---ccchHHHHHhhHHHHHHHHHhHhheeEecCH---HHhcccchHHHHHHHHhccchH-H
Confidence 9999999999999999997 9999999999999999999987766555442 222221 11 0011222 3
Q ss_pred HHHHHHHHHHHHhhhhhccchHHHHHHHhhc-cCCCCc-ccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhcc
Q 010376 357 IANAAIVVHLVGAYQVFCQPLFAFVEKWSAK-KWPKSD-LVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP 434 (512)
Q Consensus 357 i~~~~~~i~~~~s~pl~~~p~~~~l~~~~~~-~~~~s~-~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp 434 (512)
..-++..++...+.--.++..-+.+...-.+ ..|..- .++++.. -| .....+.+...++..+.+
T Consensus 289 ~ip~~ValS~~G~~n~~ifs~SR~~~~~areG~LP~~~s~i~~~~~--TP------------~~allf~~~~~i~~~~~~ 354 (479)
T KOG1287|consen 289 AIPFSVALSLIGSLNSVIFSSSRLFYAGAREGHLPAFFSMISVRRF--TP------------RPALLFSGLLSIVLSLIG 354 (479)
T ss_pred HHHHHHHHHhhhhhhhHHHHHHHHHHHHHHccCccHHHHhhcCCCC--CC------------hHHHHHHHHHHHHHHHHh
Confidence 3444445555555443333332222221111 112110 0111111 11 122333344555556677
Q ss_pred chHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCchhHH
Q 010376 435 FFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRW 473 (512)
Q Consensus 435 ~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~ 473 (512)
|+..+++..+=.-.....+.+=++++++.++++..|+-+
T Consensus 355 d~~~LIny~sf~~~l~~~l~~~gll~lR~k~p~~~rPiK 393 (479)
T KOG1287|consen 355 DFDQLINYVSFAYWLFRGLSMAGLLWLRWKHPPLPRPIK 393 (479)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCCEe
Confidence 999999999866666777788889999988776554433
No 16
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=99.85 E-value=9.5e-19 Score=176.20 Aligned_cols=361 Identities=10% Similarity=0.036 Sum_probs=247.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcce
Q 010376 65 WTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKV 144 (512)
Q Consensus 65 ~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~ 144 (512)
..-++.+.++++|+|+|++|....+.||+..++..++.+.+.+++.+++.|.....+. + ..++.+++++.|||+++
T Consensus 6 ~~w~~~l~gt~IGaGiL~LP~~ag~~G~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~--p--~~~i~~~~~~~fGk~~G 81 (397)
T TIGR00814 6 TGWMLGLYGTAIGAGVLFLPIQAGLGGLWVLVLMAIIAYPLTYFGHRALARFLLSSKN--P--CEDITEVVEEHFGKNWG 81 (397)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC--C--CCCHHHHHHHHcCHHHH
Confidence 4567889999999999999999999999988888999999999999999997543221 1 24899999999999999
Q ss_pred eehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHHHH
Q 010376 145 IFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAI 224 (512)
Q Consensus 145 ~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~ 224 (512)
.+..+...+..+..+.+|....++.+..++...... +.+.++...+..++++........+.+.+++.+-+.
T Consensus 82 ~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~~~~~~--------~~p~~~i~~lilv~il~~iv~~G~~~i~r~~~il~~ 153 (397)
T TIGR00814 82 ILITLLYFFAIYPILLIYSVAITNDSASFLVNQLGT--------APPLRGLLSLALILILVAIMSFGEKLLFKIMGPLVF 153 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------CCcHHHHHHHHHHHHHHHHHHhcHHHHHHHHHHHHH
Confidence 999999999999999999999999998887542110 111222222222222222223355555555555544
Q ss_pred HHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHH----hhcCC
Q 010376 225 MSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQ----DTIRS 300 (512)
Q Consensus 225 ~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~----~em~~ 300 (512)
..+..+++.....+.+...++-.. . +.....+.++..+++...|||.+|+++|++. +|.+|
T Consensus 154 ~~ii~l~~l~~~lip~~~~~~L~~--~-------------p~~~~~~~~i~~alpv~~~SF~~~~iIssl~~~~~~~~~~ 218 (397)
T TIGR00814 154 PLVLILVLLSLYLIPHWNGANLTT--F-------------PSFNGFLKTLWLTIPVMVFSFNHSPIISSFAISYREEYGD 218 (397)
T ss_pred HHHHHHHHHHHHHHHHcCHHHHhc--C-------------CcccchHHHHHHHHHHHHHHHHccccchHHHHHHHHHcCC
Confidence 333222222222222111100000 0 0011133478899999999999999999998 44554
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCC-----Cccc--ccccc-cCCChHHHHHHHHHHHHHHHHhhhh
Q 010376 301 PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA-----PNNL--LTGFG-FYNPYWLIDIANAAIVVHLVGAYQV 372 (512)
Q Consensus 301 p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~-----~~~i--l~~~~-~~~~~~~~~i~~~~~~i~~~~s~pl 372 (512)
|....||.+|++..+..+.+++|+..-+.+....+.+. ++|+ +..+. ..+..+...+..++-.+.+.+||--
T Consensus 219 ~~~~~~k~~k~i~~~~~i~~~~y~~~~~s~~~~l~~~~~~~a~~~nis~Ls~l~~~~~~~~i~~~~~~f~~~Ai~tSFlG 298 (397)
T TIGR00814 219 KEFAERKCLRIMKGASLILVATVMFFVFSCVLSLSPAEAVAAKEQNISILSYLANHFNAAWISYAGPIVAIVAISKSFFG 298 (397)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHcCcHHHHHHHhhcCCcHHHHHHHHHHHHHHHHHHHH
Confidence 44334899999999999999999988888877776542 1221 11000 0122355567777778889999988
Q ss_pred hccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhh
Q 010376 373 FCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLT 452 (512)
Q Consensus 373 ~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~ 452 (512)
....+++.+.+.+.+..+.. ++ +.+.+........++++.++.+|..-|++-.+++-+|+-..+.+.
T Consensus 299 ~~lg~~e~l~~l~~~~~~~~---~~----------~~~~~~~~~~~~~~~~~~~w~~~~~n~~il~~i~~~~gp~~a~i~ 365 (397)
T TIGR00814 299 HYLGAREGLNGIVLNSLKMK---GK----------KINIRKLNRAIAIFIVLTTWIVAYINPSILSFIEALGGPIIAMIL 365 (397)
T ss_pred HHHhHHHHHHHHHHHHhccc---cc----------ccCHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHhhHHHHHHHH
Confidence 88889999998873321110 01 112234455666778889999999999999999988888888899
Q ss_pred hhhhhhhhhhhcc
Q 010376 453 VYFPIEMYKAQKK 465 (512)
Q Consensus 453 fi~P~~~~l~~~~ 465 (512)
|++|...-+|...
T Consensus 366 ~~~p~~~~~~v~~ 378 (397)
T TIGR00814 366 FLMPMYAIYKVPA 378 (397)
T ss_pred HHHHHHHHHccHH
Confidence 9999999888644
No 17
>PRK10655 potE putrescine transporter; Provisional
Probab=99.75 E-value=7.1e-15 Score=152.36 Aligned_cols=241 Identities=11% Similarity=0.038 Sum_probs=152.8
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
++|+.|.++.+...+++++|+|++.+|..+++.|.. +++..++.+++.......+.|...+.+. .| ..|.... +
T Consensus 4 ~~~~l~~~~~~~l~vg~~iGsGif~~p~~~~~~G~~-~~~~w~i~~~~~~~~a~~~aeL~~~~P~-~G---G~y~y~~-~ 77 (438)
T PRK10655 4 KSNKMGVVQLTILTAVNMMGSGIIMLPTKLAQVGTI-SILSWLVTAVGSMALAYAFAKCGMFSRK-SG---GMGGYAE-Y 77 (438)
T ss_pred ccCcccHHHHHHHHHHhhhhhHHHHhHHHHHHhhHH-HHHHHHHHHHHHHHHHHHHHHHhhhCCC-CC---chHHHHH-H
Confidence 467789999999999999999999999998888874 6778888888888888888887655332 33 2455444 4
Q ss_pred hhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhH
Q 010376 138 NLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWW 217 (512)
Q Consensus 138 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 217 (512)
.+||+.+++..|..++.......++.....+++..+++. ..+.....++..+++..+..+ |....+.
T Consensus 78 ~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~y~~~~~~~------------~~~~~~~~~~~~~~l~~~~~l-n~~g~~~ 144 (438)
T PRK10655 78 AFGKSGNFMANYTYGVSLLIANVAIAISAVGYGTELFGA------------TLSPVQICLATIGVLWLCTVA-NFGGARI 144 (438)
T ss_pred HcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc------------ccchHHHHHHHHHHHHHHHHH-HHhCHHH
Confidence 499999999999887777665555554455555554421 001111112222222222222 4444555
Q ss_pred HHHHHHHHHH---HHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhH
Q 010376 218 LSIVAAIMSF---TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEI 294 (512)
Q Consensus 218 ~s~~~~~~~~---~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 294 (512)
.+.++.+.+. .-+++++..+.... +.+... +. +.+ .....+.++..++....|+|.|.+....+
T Consensus 145 ~~~i~~i~~~~~l~~l~~~~i~~~~~~-~~~~~~---~~--~~~-------~~~~~~~~~~~~~~~~~~af~G~e~~~~~ 211 (438)
T PRK10655 145 TGQISSVTVWGVIIPVVGLSIIGWFWF-SPSLYV---AA--WNP-------HHLPFFSAVGSSIAMTLWAFLGLESACAN 211 (438)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-Cccccc---CC--cCc-------cCCchHHHHHHHHHHHHHHHhhhhhhhhh
Confidence 5554444332 21122222222211 111111 10 111 11112235667788999999999999999
Q ss_pred HhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhh
Q 010376 295 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 333 (512)
Q Consensus 295 ~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~ 333 (512)
.+|+|||+ |+.+|++..+..++.++|++........
T Consensus 212 a~E~k~P~---r~iPrAi~~~~~~~~~~Y~l~~~~~~~~ 247 (438)
T PRK10655 212 SDAVENPE---RNVPIAVLGGTLGAAVIYIVSTNVIAGI 247 (438)
T ss_pred HHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhC
Confidence 99999997 8999999999999999999876554433
No 18
>PRK10249 phenylalanine transporter; Provisional
Probab=99.73 E-value=1.2e-14 Score=151.04 Aligned_cols=250 Identities=14% Similarity=0.053 Sum_probs=156.5
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.+.+|+.+.++..+..+++++|+|++..|.. .+++|.. .++..++.+++....+..+.|...+.+. .| ...+.
T Consensus 17 ~~l~r~l~~~~~~~i~ig~~IGsGif~~~g~~~~~aGp~-~~l~~li~~~~~~~~~~~~aEl~~~~P~-~G----g~~~y 90 (458)
T PRK10249 17 PTLHRGLHNRHIQLIALGGAIGTGLFLGIGPAIQMAGPA-VLLGYGVAGIIAFLIMRQLGEMVVEEPV-SG----SFAHF 90 (458)
T ss_pred hhhhccCcHhHhhhhhhhcccchhHHHHHHHHHHhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHH
Confidence 3577889999999999999999999988776 6677874 7888889999999999999997766443 23 34445
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
+++.+|+..++++.|..++.......+.....+.++..+.+. .+...+.++..++...+. .++.+.
T Consensus 91 ~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~a~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~lN-~~gv~~ 156 (458)
T PRK10249 91 AYKYWGPFAGFLSGWNYWVMFVLVGMAELTAAGIYMQYWFPD-------------VPTWIWAAAFFIIINAVN-LVNVRL 156 (458)
T ss_pred HHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc-------------CcHHHHHHHHHHHHHHHH-Hhcchh
Confidence 667799999999999988877666666666666666544321 111111111212222221 223333
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCC-CCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHh
Q 010376 215 VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRS-FKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLE 293 (512)
Q Consensus 215 l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 293 (512)
.+.+..+..+..+..+++.+..++.....+.+ .+...+.. +..+ ...+.++.++..++....|+|.|...+..
T Consensus 157 ~~~i~~~~~~ikv~~i~~~i~~~i~~~~~~~~~~~~~~~~~-~~~~-----~~~~~g~~~~~~~~~~~~~af~G~e~~~~ 230 (458)
T PRK10249 157 YGETEFWFALIKVLAIIGMIGFGLWLLFSGHGGEKASIDNL-WRYG-----GFFATGWNGLILSLAVIMFSFGGLELIGI 230 (458)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCChhhc-cCCC-----CCCCCcHHHHHHHHHHHHHHHcCHHHHHH
Confidence 33333222222222122222222222111111 11111110 0000 01123445678899999999999999999
Q ss_pred HHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhc
Q 010376 294 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF 334 (512)
Q Consensus 294 i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~f 334 (512)
..+|+|||+ |+.||++..+.....++|++.-.......
T Consensus 231 ~a~E~~~P~---k~iPrai~~~~~~~~~~y~~~~~~~~~~~ 268 (458)
T PRK10249 231 TAAEARDPE---KSIPKAVNQVVYRILLFYIGSLVVLLALY 268 (458)
T ss_pred HHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHheec
Confidence 999999997 89999999999999999987554443333
No 19
>PRK15049 L-asparagine permease; Provisional
Probab=99.73 E-value=1.8e-14 Score=151.08 Aligned_cols=371 Identities=15% Similarity=0.116 Sum_probs=200.7
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.+.+|+.+.++..+..++.+||+|++..|.. ++++|.. +++..++.+++....+..+.|.....+. .| .....
T Consensus 24 ~~l~r~L~~~~~~~i~~G~~IGsGiF~~~g~~~~~aGp~-~il~~li~~i~~~~v~~slaELas~~P~-aG----g~y~y 97 (499)
T PRK15049 24 EGYHKAMGNRQVQMIAIGGAIGTGLFLGAGARLQMAGPA-LALVYLICGLFSFFILRALGELVLHRPS-SG----SFVSY 97 (499)
T ss_pred hhhhccCCHhHhHHHhhhccccchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHH
Confidence 3478889999999999999999999888774 7788874 5788888999999999999997765443 33 33334
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
+++.+|++.++++.|..++.....+.......+..+..+ +. + . ..+...+.++..+++.. + |+..
T Consensus 98 ~~~~~G~~~gf~~GW~~~l~~~~~~~~~~~a~~~~~~~~-~~--~-----~---~~~~~~~~~~~~~l~~~---i-N~~g 162 (499)
T PRK15049 98 AREFLGEKAAYVAGWMYFINWAMTGIVDITAVALYMHYW-GA--F-----G---GVPQWVFALAALTIVGT---M-NMIG 162 (499)
T ss_pred HHHHhCcHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cc--C-----C---CCcHHHHHHHHHHHHHH---H-HHHH
Confidence 456699999999999998876554444444444333221 10 0 0 11111111112222222 2 5555
Q ss_pred hhHHHHHHHHHHH---HHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 010376 215 VWWLSIVAAIMSF---TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 291 (512)
Q Consensus 215 l~~~s~~~~~~~~---~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i 291 (512)
.+..+.+..++.+ ..++..++.++.....+...+....+.....+ +....+.++...+.++...+|+|.|...+
T Consensus 163 vk~~~~i~~~~~~iki~~l~~~ii~~i~~~~~~~~~~~~~~~f~~~~~---~~~~~p~g~~~~~~~~~~~~faf~G~e~i 239 (499)
T PRK15049 163 VKWFAEMEFWFALIKVLAIVTFLVVGTVFLGSGQPLDGNTTGFHLITD---NGGFFPHGLLPALVLIQGVVFAFASIEMV 239 (499)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCcccccccC---CCCcccccHHHHHHHHHHHHHHHhhHHHH
Confidence 5555555554442 22222222222222221111111011100000 00111233445667778899999999999
Q ss_pred HhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCC----CcccccccccCCChHHHHHHHHHHHHHHH
Q 010376 292 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA----PNNLLTGFGFYNPYWLIDIANAAIVVHLV 367 (512)
Q Consensus 292 ~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~----~~~il~~~~~~~~~~~~~i~~~~~~i~~~ 367 (512)
....+|+|||+ |+.+|++..++..+.++|+..........+.+. .++...-+....-.+...+.++..++..+
T Consensus 240 ~~~aeE~knP~---r~iPrAi~~~~~~i~~~yi~~~~~~~~~~p~~~~~~~~sP~~~~~~~~g~~~~~~ii~~~ilia~~ 316 (499)
T PRK15049 240 GTAAGECKDPQ---TMVPKAINSVIWRIGLFYVGSVVLLVMLLPWSAYQAGQSPFVTFFSKLGVPYIGSIMNIVVLTAAL 316 (499)
T ss_pred HHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecchhccCcCCCHHHHHHHHcCchhHHHHHHHHHHHHHH
Confidence 99999999997 899999999999999999986665544444221 11111100000112333444555555555
Q ss_pred HhhhhhccchHHHHHHHhhcc-CCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccc--hHHHHHHhh
Q 010376 368 GAYQVFCQPLFAFVEKWSAKK-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF--FNDVVGILG 444 (512)
Q Consensus 368 ~s~pl~~~p~~~~l~~~~~~~-~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~--~~~i~~l~G 444 (512)
.+..-.+....+.+...-.++ .|+ +..|..+.+.| ..-+.+...+.++..++....|+ ++.++++.
T Consensus 317 ss~ns~~~~~sR~l~a~Ardg~lP~--~f~kv~k~~~P--------~~Ail~~~~i~~l~~~l~~~~~~~~f~~l~~~~- 385 (499)
T PRK15049 317 SSLNSGLYCTGRILRSMAMGGSAPS--FMAKMSRQHVP--------YAGILATLVVYVVGVFLNYLVPSRVFEIVLNFA- 385 (499)
T ss_pred HHHHHHHHHHHHHHHHHHhcCCcCH--HHHHhCCCCCC--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHH-
Confidence 544333333334444332111 121 11111111223 11122222222222223333342 55555655
Q ss_pred hhhhhhhhhhhhhhhhhhhcc
Q 010376 445 AMGFWPLTVYFPIEMYKAQKK 465 (512)
Q Consensus 445 a~~~~~l~fi~P~~~~l~~~~ 465 (512)
..+..+.|++|++.+++.++
T Consensus 386 -~~~~li~y~~~~~~~l~~R~ 405 (499)
T PRK15049 386 -SLGIIASWAFIIVCQMRLRK 405 (499)
T ss_pred -HHHHHHHHHHHHHHHHHHHH
Confidence 35667899999999998765
No 20
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=99.72 E-value=1.7e-14 Score=149.22 Aligned_cols=243 Identities=13% Similarity=0.104 Sum_probs=155.4
Q ss_pred cccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
+++|+.+.++.+...+++++|+|++.+|...++.|.. .+...++.++.+...+..+.|...+.+. .| ..|....
T Consensus 2 ~~~~~lg~~~~~~l~vg~~IGsGif~lp~~~a~~G~~-~i~~wli~~~~~l~~al~~aEL~s~~P~-~G---G~y~y~~- 75 (435)
T PRK10435 2 SSAKKIGLFACTGVVAGNMMGSGIALLPANLASIGSI-AIWGWIISIIGAMSLAYVYARLATKNPQ-QG---GPIAYAG- 75 (435)
T ss_pred CCCCcCCHHHHHHHHHhhHHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC---ChhHHHH-
Confidence 3567889999999999999999999999999988865 5777777888888888888887665443 23 2455554
Q ss_pred HhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhh
Q 010376 137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVW 216 (512)
Q Consensus 137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 216 (512)
+ +||..+++..|..+........++.+...+++..+++.. . . .. ...++..++++.+..+ |+...+
T Consensus 76 ~-~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~y~~~~~p~~----~---~--~~---~~~~~~~~i~~~~~~l-n~~gvk 141 (435)
T PRK10435 76 E-ISPAFGFQTGVLYYHANWIGNLAIGITAVSYLSTFFPVL----N---D--PI---PAGIACIAIVWVFTFV-NMLGGT 141 (435)
T ss_pred H-HCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccc----C---C--hH---HHHHHHHHHHHHHHHH-HHHhHH
Confidence 4 699999999998776554445555555556666554311 0 0 01 1111111122222222 445555
Q ss_pred HHHHHHHHHHHHHHHHHHh---hhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHh
Q 010376 217 WLSIVAAIMSFTYSTAGLG---LGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLE 293 (512)
Q Consensus 217 ~~s~~~~~~~~~~~~iii~---~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 293 (512)
..+.+..+.++..++.++. .+..+. +.+... + ++. .....+..++..++....|+|.|.+.+..
T Consensus 142 ~~~~i~~i~~~~~li~~~~~~i~g~~~~-~~~~~~---~--~~~-------~~~~~~~~~~~~a~~~~~faf~G~E~~~~ 208 (435)
T PRK10435 142 WVSRLTTIGLVLVLIPVVGTAIVGWHWF-DAATYA---A--NWN-------TSDTTDGHAIIKSILLCLWAFVGVESAAV 208 (435)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHc-CHHhhc---c--ccc-------CCCCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence 5555554443322211111 111111 100000 0 110 11112345788899999999999999999
Q ss_pred HHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 294 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 294 i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
..+|+|||+ |+++|++..+..+++++|++.........+
T Consensus 209 ~a~E~knP~---r~iPrAi~~~~~iv~ilYil~~~~~~~~~p 247 (435)
T PRK10435 209 STGMVKNPK---RTVPLATMLGTGLAGIIYIAATQVISGMFP 247 (435)
T ss_pred HHHHhhCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999997 899999999999999999987776554443
No 21
>PRK10238 aromatic amino acid transporter; Provisional
Probab=99.72 E-value=2e-14 Score=149.44 Aligned_cols=240 Identities=12% Similarity=0.034 Sum_probs=153.7
Q ss_pred CCcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 010376 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 55 ~~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
+++.+|+.+.++..+..+++++|+|++..|.. .+++|. ..++..++.+++....+..+.|...+.+. .| ++.+
T Consensus 7 ~~~l~r~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~Gp-~~i~~~~i~gi~~~~v~~s~aEl~s~~P~-aG----g~y~ 80 (456)
T PRK10238 7 GEQLKRGLKNRHIQLIALGGAIGTGLFLGSASVIQSAGP-GIILGYAIAGFIAFLIMRQLGEMVVEEPV-AG----SFSH 80 (456)
T ss_pred chhhhccCcHHHHHHHHhhccccchHHHhhHHHHHhcCc-HHHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHH
Confidence 34578899999999999999999999988887 667776 46777888888888888888887665443 23 3333
Q ss_pred HHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcc
Q 010376 134 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD 213 (512)
Q Consensus 134 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 213 (512)
.+++.+||...++..|..++.....+.+.....++.++.+.+. .+...+.++..++...+ |+.
T Consensus 81 ~~~~~~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-------------~~~~~~~~i~~~~~~~l----N~~ 143 (456)
T PRK10238 81 FAYKYWGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-------------IPTWVSAAVFFVVINAI----NLT 143 (456)
T ss_pred HHHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------CcHHHHHHHHHHHHHHH----HHH
Confidence 3556699999999999999998888888887777777654421 11111222222222222 333
Q ss_pred hhhHHHHHHHH---HHHHHHHHHHhhhhhhhhcCCC-CCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccch
Q 010376 214 QVWWLSIVAAI---MSFTYSTAGLGLGIGKVAGNRS-FKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 289 (512)
Q Consensus 214 ~l~~~s~~~~~---~~~~~~~iii~~~i~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 289 (512)
..+..+.+..+ ..+..++++++.++.....+.. .+...... +..+ ...+..+.++..++....|+|.|.+
T Consensus 144 gv~~~~~~~~~~~~iki~~i~~~ii~~~~~~~~~~~~~~~~~~~~-~~~~-----~~~~~g~~~~~~~~~~~~~af~G~e 217 (456)
T PRK10238 144 NVKVFGEMEFWFAIIKVIAVVAMIIFGGWLLFSGNGGPQATVSNL-WDQG-----GFLPHGFTGLVMMMAIIMFSFGGLE 217 (456)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCcccccc-CCCC-----CCccccHHHHHHHHHHHHHHhcCHH
Confidence 44444444433 3332222222222222121111 11111100 0000 0012234466677888999999999
Q ss_pred hhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHH
Q 010376 290 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLC 326 (512)
Q Consensus 290 ~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~ 326 (512)
......+|+|||+ |++||++..+.....++|+..
T Consensus 218 ~~~~~aeE~knP~---r~iPrAi~~~~~~i~~~y~~~ 251 (456)
T PRK10238 218 LVGITAAEADNPE---QSIPKATNQVIYRILIFYIGS 251 (456)
T ss_pred HHHHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999997 899999998888888888764
No 22
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=99.71 E-value=3.3e-14 Score=150.57 Aligned_cols=375 Identities=11% Similarity=0.035 Sum_probs=212.6
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHHH--HHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWAI--AQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~af--~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
.+.+|+.+.++.++..++.++|+|++.+|... ..+|.. .++.+++.++.+...+..+.|...+.+. .|.. +.|.+
T Consensus 24 ~~L~r~L~~~~l~~l~ig~viGsGIf~l~g~~a~~~aGp~-~~ls~liagv~~l~~al~yaElas~~P~-sGg~-Y~y~~ 100 (557)
T TIGR00906 24 SKMKRCLTTWDLMALGIGSTIGAGIYVLTGEVARNDSGPA-IVLSFLISGLAAVLSGFCYAEFGARVPK-AGSA-YLYSY 100 (557)
T ss_pred cchhhcCCHHHHHHHHhhhhhcchhhhhhhHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCcc-eeeHH
Confidence 35788999999999999999999999998653 347876 5777888999999999999998776553 3432 45554
Q ss_pred HHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhccccc-----CCCCCCcccccchhhHHHHHHHHhhcc
Q 010376 134 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQK-----SGGKDPCHMSSNGYMITFGIIEVLFSQ 208 (512)
Q Consensus 134 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~-----~~~~~~~~~~~~~~~~i~~~~~~pl~~ 208 (512)
.. +|+..++++.|..++.....+.+.....++++..++....... ......... ......+..++++.+..
T Consensus 101 ~~---~G~~~gfi~GW~~~l~~~~~~a~va~~~s~yl~~ll~~~~~~~~~~~~~~~~~~l~~-~~~~~a~~ii~l~~~ln 176 (557)
T TIGR00906 101 VT---VGELWAFITGWNLILEYVIGTAAVARSWSAYFDELLNKQIGQFRRTYFKLNYDGLAE-YPDFFAVCLILLLAVLL 176 (557)
T ss_pred HH---hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccccccccCCcccc-cchHHHHHHHHHHHHHH
Confidence 33 8999999999999988877777777777777776654210000 000000000 01111111112222222
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccc
Q 010376 209 IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFS 288 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~ 288 (512)
.+..+..++++.+..+..+..++++++.+..+... .++..... .+. +...+.++.+++.+.....|+|.|.
T Consensus 177 ~~Gik~s~~v~~i~~~iki~~l~~~iv~g~~~~~~-~~~~~~~~---~~~-----~~f~p~g~~g~l~g~~~~~faf~Gf 247 (557)
T TIGR00906 177 SFGVKESAWVNKIFTAINILVLLFVIIAGFTKADV-ANWSITEE---KGA-----GGFMPYGFTGVLSGAATCFFAFIGF 247 (557)
T ss_pred HhchhHHHHHHHHHHHHHHHHHHHhhhHHHhhCCc-hhcccccc---ccC-----CCCCCcchHHHHHHHHHHHHHHhhH
Confidence 34556666555555544443333333333332211 11110000 000 0111223457888899999999999
Q ss_pred hhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC---CCcccccccccCCChHHHHHHHHHHHHH
Q 010376 289 IILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL---APNNLLTGFGFYNPYWLIDIANAAIVVH 365 (512)
Q Consensus 289 ~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~---~~~~il~~~~~~~~~~~~~i~~~~~~i~ 365 (512)
..+....+|+|||+ |+++|++..++.+++++|+++...-....+.+ .++++...+.....++...+..+.....
T Consensus 248 d~v~~~aeE~knP~---r~iP~aii~sl~i~~vlY~lv~~~l~~~vp~~~l~~~~p~~~a~~~~g~~~~~~ii~~~~~~~ 324 (557)
T TIGR00906 248 DAIATTGEEVKNPQ---RAIPIGIVTSLLVCFVAYFLMSAALTLMMPYYLLDPDAPFPVAFEYVGWGPAKYIVAVGALCG 324 (557)
T ss_pred HHHHHhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhccccHHHhCcCcHHHHHHHHcCchHHHHHHHHHHHHH
Confidence 99999999999997 89999999999999999998765543333221 1122211111112344455555555555
Q ss_pred HHHhhhhhccchHHHHHHHhhcc-CCCCccccc-ccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHh
Q 010376 366 LVGAYQVFCQPLFAFVEKWSAKK-WPKSDLVTA-EYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGIL 443 (512)
Q Consensus 366 ~~~s~pl~~~p~~~~l~~~~~~~-~~~s~~~~~-~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~ 443 (512)
+..+....+...-+.+...-.++ .|+ . ..| +.+.+.| .+ ......+++.+++.+ .+++.+.++.
T Consensus 325 ~~~sl~~~~~~~sRil~amarDGlLP~-~-fakv~~r~~tP---------~~--Ail~~~iv~~il~~~-~~~~~l~~l~ 390 (557)
T TIGR00906 325 MSTSLLGGMFPLPRVIYAMARDGLLFK-W-LAQINSKTKTP---------IN--ATVVSGAIAALMAFL-FDLKALVDLL 390 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHcCCCccH-H-HhccCCCCCCc---------HH--HHHHHHHHHHHHHHH-cCHHHHHHHH
Confidence 55555444444444444432111 111 0 111 1011222 11 112222233334433 3567777665
Q ss_pred hhhhhhhhhhhhhhhhhhhhcc
Q 010376 444 GAMGFWPLTVYFPIEMYKAQKK 465 (512)
Q Consensus 444 Ga~~~~~l~fi~P~~~~l~~~~ 465 (512)
..+..+.|.++++..+.+++
T Consensus 391 --sig~ll~y~lv~~~~l~lR~ 410 (557)
T TIGR00906 391 --SIGTLLAYSLVAACVLILRY 410 (557)
T ss_pred --HHHHHHHHHHHHHHHHHhhc
Confidence 24556889999877777653
No 23
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=99.71 E-value=5e-14 Score=146.23 Aligned_cols=244 Identities=11% Similarity=0.073 Sum_probs=152.4
Q ss_pred cccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
+++|+.+.++++...+++++|+|++.+|....+.|.. .+...++.++.....+..+.|.....+. .| ..|.. ++
T Consensus 5 ~~~~~lg~~~~~~l~vg~~iGsGif~~~~~~a~~g~~-~~~~~~i~~~~~l~~al~~aEL~s~~P~-aG---G~y~~-~~ 78 (445)
T PRK10644 5 ADAHKVGLIPVTLMVAGNIMGSGVFLLPANLASTGGI-AIYGWLVTIIGALGLSMVYAKMSSLDPS-PG---GSYAY-AR 78 (445)
T ss_pred ccCCCcCHHHHHHHHHhhHhhhHHHhhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC---ChhHH-HH
Confidence 4667889999999999999999999999998877743 4566667777777778888887665442 33 24555 55
Q ss_pred HhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhh
Q 010376 137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVW 216 (512)
Q Consensus 137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 216 (512)
+.+||+.+++..|..++.......+.......+...+.+.. . ......++..++++.+..+ |...++
T Consensus 79 ~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----------~-~~~~~~~~~~~~~~~~~~l-n~~gvk 145 (445)
T PRK10644 79 RCFGPFLGYQTNVLYWLACWIGNIAMVVIGVGYLSYFFPIL-----------K-DPLVLTITCVVVLWIFVLL-NIVGPK 145 (445)
T ss_pred HHcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccc-----------C-CcHHHHHHHHHHHHHHHHH-HHhchH
Confidence 66999999999998887765555555544555555444310 0 0111112222222222222 444445
Q ss_pred HHHHHHHHHHHHH---HHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHh
Q 010376 217 WLSIVAAIMSFTY---STAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLE 293 (512)
Q Consensus 217 ~~s~~~~~~~~~~---~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~ 293 (512)
....+..+.++.- +++.+..++... +++..... +. ......+..+..++....|+|.|.+....
T Consensus 146 ~~~~i~~i~~~~~~i~l~~~~~~~~~~~-~~~~~~~~-----~~-------~~~~~~~~~~~~~~~~~~~af~G~e~~~~ 212 (445)
T PRK10644 146 MITRVQAVATVLALIPIVGIAVFGWFWF-RGETYMAA-----WN-------VSGLGTFGAIQSTLNVTLWSFIGVESASV 212 (445)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhccCC-----cc-------ccccchHHHHHHHHHHHHHHHHhHHHHHH
Confidence 5544444443321 111221222111 11111110 00 00112233566778899999999999999
Q ss_pred HHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 294 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 294 i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
+.+|+|||+ |+.+|++..+..+++++|+++.+......+
T Consensus 213 ~aeE~k~P~---r~iPrai~~s~~i~~v~Y~l~~~~~~~~~~ 251 (445)
T PRK10644 213 AAGVVKNPK---RNVPIATIGGVLIAAVCYVLSSTAIMGMIP 251 (445)
T ss_pred HHHHhhCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 999999997 899999999999999999988776444333
No 24
>PRK10746 putative transport protein YifK; Provisional
Probab=99.70 E-value=6.6e-14 Score=145.51 Aligned_cols=371 Identities=11% Similarity=0.018 Sum_probs=208.0
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
++.+|+.+.++..+..++++||+|++..|.. .+.+|.. .++..++.+++.+..+..+.|.....+. .| ++.+.
T Consensus 6 ~~l~r~L~~~~~~~i~ig~~IGtGlf~~~g~~l~~aGp~-~~l~~~i~g~~~~~v~~~~aEl~~~~P~-sG----g~~~y 79 (461)
T PRK10746 6 PELQRGLEARHIELIALGGTIGVGLFMGAASTLKWAGPS-VLLAYIIAGLFVFFIMRSMGEMLFLEPV-TG----SFAVY 79 (461)
T ss_pred hHHhccCcHHHHHHHHHHhhhhhhHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHHH
Confidence 3577889999999999999999999887766 7788874 5778888888889999999997665432 22 45556
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
+++.+||+.++++.|..++.....+.+.....+.+++.+.+. .+...+..+..+++..+ |+..
T Consensus 80 ~~~~~g~~~Gf~~gw~~~~~~~~~~~~~~~a~~~~l~~~~p~-------------~~~~~~~~~~~~~~~~l----N~~g 142 (461)
T PRK10746 80 AHRYMSPFFGYLTAWSYWFMWMAVGISEITAIGVYVQFWFPE-------------MAQWIPALIAVALVALA----NLAA 142 (461)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCC-------------CchHHHHHHHHHHHHHH----HHHh
Confidence 777799999999999999888777777777777776655421 11112222222222222 3444
Q ss_pred hhHHHHHHHHHHH---HHHHHHHhhhhhhhhcCCCCCCCcccc-ccccccCCCcccchhhHHHHHHHHHHHHHHhccchh
Q 010376 215 VWWLSIVAAIMSF---TYSTAGLGLGIGKVAGNRSFKGSLTGI-SIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSII 290 (512)
Q Consensus 215 l~~~s~~~~~~~~---~~~~iii~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~ 290 (512)
++....+..+++. ..+++.+..++.....+...+.+..+. ++.++ ....+.++.++..++....|+|.+...
T Consensus 143 v~~~~~~e~~~~~~ki~~i~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~g~~~~g~~g~~~~~~~~~faf~G~e~ 218 (461)
T PRK10746 143 VRLYGEIEFWFAMIKVTTIIVMIVIGLGVIFFGFGNGGQSIGFSNLTEH----GGFFAGGWKGFLTALCIVVASYQGVEL 218 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCCCCccccccCC----CCcCcccHHHHHHHHHHHHHHhcCHHH
Confidence 4444333332222 111122221221111110000000001 11100 011123455777999999999999999
Q ss_pred hHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCc----ccccccccCCChHHHHHHHHHHHHHH
Q 010376 291 LLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN----NLLTGFGFYNPYWLIDIANAAIVVHL 366 (512)
Q Consensus 291 i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~----~il~~~~~~~~~~~~~i~~~~~~i~~ 366 (512)
+....+|+|||+ |++||++..+.....++|++.........+.+..+ +....+..........+.++..++..
T Consensus 219 v~~~a~E~knP~---k~iP~Ai~~~~~~i~~~yv~~~~~~~~~~p~~~~~~~~sp~v~~~~~~g~~~~~~i~~~~il~a~ 295 (461)
T PRK10746 219 IGITAGEAKNPQ---VTLRSAVGKVLWRILIFYVGAIFVIVTIFPWNEIGSNGSPFVLTFAKIGITAAAGIINFVVLTAA 295 (461)
T ss_pred HHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeeeCCCCCCCCCCcHHHHHHHhCchhHHHHHHHHHHHHH
Confidence 999999999997 89999999999999999998655554444432111 11100000011222334444444554
Q ss_pred HHhhhhhccchHHHHHHHhhcc-CCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccchHHHHHHhhh
Q 010376 367 VGAYQVFCQPLFAFVEKWSAKK-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPFFNDVVGILGA 445 (512)
Q Consensus 367 ~~s~pl~~~p~~~~l~~~~~~~-~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~~~~i~~l~Ga 445 (512)
+.+..-.++...+.+...-.++ .|+. ..|-.+.+.| ..-+.......++...+....|+-+.+++.+-+
T Consensus 296 ~s~~n~~~~~~sR~l~~~a~~g~lP~~--~~~~~~~g~P--------~~al~~~~~~~~l~~~~~~~~~~~~~~f~~l~~ 365 (461)
T PRK10746 296 LSGCNSGMYSCGRMLYALAKNRQLPAA--MAKVSRHGVP--------VAGVAVSILILLVGSCLNYIIPNPQRVFVYVYS 365 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHhCCCcCHH--HHHhCCCCCc--------HHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHH
Confidence 5444333344444444432211 1110 1111111223 111222222223333444456666666665443
Q ss_pred h--hhhhhhhhhhhhhhhhhccC
Q 010376 446 M--GFWPLTVYFPIEMYKAQKKI 466 (512)
Q Consensus 446 ~--~~~~l~fi~P~~~~l~~~~~ 466 (512)
+ .+..+.++++++.|++.+++
T Consensus 366 ~~~~~~~i~w~~i~~~~i~~r~~ 388 (461)
T PRK10746 366 ASVLPGMVPWFVILISQLRFRRA 388 (461)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHh
Confidence 3 33568999999999997654
No 25
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=99.69 E-value=1.6e-14 Score=142.10 Aligned_cols=371 Identities=14% Similarity=0.136 Sum_probs=239.5
Q ss_pred CCCcccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 010376 54 DDGRLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYM 132 (512)
Q Consensus 54 ~~~~~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~ 132 (512)
++.+.+|..+.++-.+.-++..||+|. ++...+.+.+|.-. ++..++.+++...-++.+.|...+.+ .. .++.
T Consensus 7 ~~~~l~rgL~~RHIqlIAiGGaIGtGLFlGSg~~I~~AGPSv-lLaY~I~G~~~f~iMRaLGEm~~~~p-~~----gSF~ 80 (462)
T COG1113 7 EEQGLKRGLKNRHIQLIAIGGAIGTGLFLGSGSAIAMAGPSV-LLAYLIAGIFVFLIMRALGEMLVANP-VS----GSFS 80 (462)
T ss_pred cchhhhhhhHHHHHHHHHHhhhhhhhhhcccchhhhhhCcHH-HHHHHHHHHHHHHHHHHHHHHHHhCC-CC----CcHH
Confidence 345578888889999999999999999 78899999999874 78889999999999999999776522 22 3999
Q ss_pred HHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHh--hccCC
Q 010376 133 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVL--FSQIP 210 (512)
Q Consensus 133 ~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~p--l~~~~ 210 (512)
+.+++.+|++++++..|..++.....+++-++.++.+++.+++. .+...+.+...+++.. +...|
T Consensus 81 ~~a~~~lG~~Agf~tgW~YW~~wv~v~~ae~tAi~~y~~~WfP~-------------vP~Wv~al~~~~l~~~~NL~sVk 147 (462)
T COG1113 81 DYARKYLGPWAGFLTGWTYWFFWVLVGIAELTAIGIYLQFWFPD-------------VPQWVFALAAVVLLLAVNLISVK 147 (462)
T ss_pred HHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999998862 2222333333333322 33345
Q ss_pred Ccchhh-HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccch
Q 010376 211 DFDQVW-WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 289 (512)
Q Consensus 211 ~l~~l~-~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 289 (512)
...++. |++.+-+..++.++++.+...+. ...++.....+++.. +.+ --.++++.+++.++-+.+|||.+..
T Consensus 148 ~FGE~EfWfAlIKV~aIi~~Iv~G~~ll~~-g~~~~~~~~g~snl~-~hG-----GffP~G~~g~~~~~~~v~Faf~GiE 220 (462)
T COG1113 148 VFGELEFWFALIKVAAIIAFIVVGIVLLFG-GFGGGGGAAGFSNLW-DHG-----GFFPNGFLGFLSALQIVMFAFGGIE 220 (462)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhh-ccCCCCCCccccccc-cCC-----CcCCCchHHHHHHHHHHHHHHhhHH
Confidence 566666 56666666665444333332222 222221111111111 110 1234566789999999999999999
Q ss_pred hhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHH-----HHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHH
Q 010376 290 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLL-----CGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVV 364 (512)
Q Consensus 290 ~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~-----~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i 364 (512)
.+-.-..|.|||+ |..+|++..-..-..++|+. ..+.-+-.++++. ++...-|...+-.+...+.|.....
T Consensus 221 lvGitA~Et~dP~---k~ipkAin~V~~RI~iFYvgsl~vi~~l~PW~~~~~~~-SPFV~~f~~iGi~~Aa~i~N~VVLt 296 (462)
T COG1113 221 LVGITAAEAKDPE---KAIPKAINSVIWRILIFYVGSLFVILSLYPWNQIGEDG-SPFVTVFSLIGIPFAAGIMNFVVLT 296 (462)
T ss_pred HHHHHHHhhcChh---hHHHHHHhhhhHHHHHHHHHHHHHHheeccccccCCCC-CcHHHHHHHcCCcccccceeEEEee
Confidence 9999999999997 88999988777777777764 4444555555543 3333333212223334455555555
Q ss_pred HHHHhhhhhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccc--hHHHHHH
Q 010376 365 HLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF--FNDVVGI 442 (512)
Q Consensus 365 ~~~~s~pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~--~~~i~~l 442 (512)
...++.---++..-+.+..+-.+....+. ..|-.+...| ..-+........++.++-...|. |+.+.+.
T Consensus 297 Aa~S~~NSglystsRmL~~la~~g~APk~-~~klsk~gVP--------~~ai~~s~~~~~~~V~Lny~~P~~vF~~v~s~ 367 (462)
T COG1113 297 AALSALNSGLYSTSRMLYSLAKQGDAPKA-FAKLSKRGVP--------VNAILLSAVVLLLGVVLNYILPEKVFELVTSS 367 (462)
T ss_pred chhhcccccccccchHHHHHhhcCcccHh-HhhccccCCC--------HHHHHHHHHHHHHHHHHHhhcchhHHHHHHHH
Confidence 55555544444455555554322111110 1111111233 44456677777788888888893 4444444
Q ss_pred hhhhhhhhhhhhhhhhhhhhhcc
Q 010376 443 LGAMGFWPLTVYFPIEMYKAQKK 465 (512)
Q Consensus 443 ~Ga~~~~~l~fi~P~~~~l~~~~ 465 (512)
.+ .+.+..+.+=.+.|+|.+|
T Consensus 368 s~--~~~l~vW~~I~~s~l~~rk 388 (462)
T COG1113 368 SG--LGLLFVWLMILLSQLKLRK 388 (462)
T ss_pred HH--HHHHHHHHHHHHHHHHHHh
Confidence 33 3344556666788888877
No 26
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=99.69 E-value=1.1e-13 Score=144.57 Aligned_cols=250 Identities=13% Similarity=0.092 Sum_probs=155.0
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhHHHHHHHHh-ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQL-GWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~-G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
++|+.|.+++++..+++++|+|++.+|....+. |....++..++.+++....+..+.|...+.+.+.|. .|... +
T Consensus 5 ~~~~l~~~~~~~l~ig~vIGsGif~~~~~~~~~~g~~~~~~~wli~~~~~~~~al~~aEl~s~~P~~sGG---~y~y~-~ 80 (473)
T TIGR00905 5 KSKKLGLFALTALVIGSMIGSGIFSLPQNLASVAGPGAVIIGWIITGVGMLALAFVFAILATKKPELDGG---IYAYA-R 80 (473)
T ss_pred cCCCccHHHHHHHHHHHHHhHHHHHhHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC---hhhhH-H
Confidence 356789999999999999999999999996654 444346677888888888888899977665431232 44433 5
Q ss_pred HhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHH--HhhccCCCcch
Q 010376 137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIE--VLFSQIPDFDQ 214 (512)
Q Consensus 137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--~pl~~~~~l~~ 214 (512)
+.+||+.+++..|..++.......++.......+..+++... . . ......+...+++ .-..-.+..+.
T Consensus 81 ~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~p~~~---~------~-~~~~~~~~~~~~~~~~~~ln~~Gi~~ 150 (473)
T TIGR00905 81 EGFGPYIGFMSGWGYWLSAWIGNVAYAVLLFSALGYFFPLFG---S------G-NPVPSILGASVLLWVFTFLVLRGVRQ 150 (473)
T ss_pred hHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhc---C------C-CcHHHHHHHHHHHHHHHHHHHhCHHH
Confidence 669999999999998877666666666666666666654110 0 0 0111111111111 11222234444
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhH
Q 010376 215 VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEI 294 (512)
Q Consensus 215 l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i 294 (512)
..+++.+..+..+..+++++..++... +.+....+..... . +.....+..+..++....|+|.|.+....+
T Consensus 151 ~~~i~~~~~~~~l~~l~~~ii~~~~~~-~~~~~~~~~~~~~-~-------p~~~~~~~~~~~~~~~~~~af~G~e~~~~~ 221 (473)
T TIGR00905 151 AAFINTITTIAKLIPLFLFIIIGWFWF-KLDLFTADFWGHD-V-------PSLGSVFSQVKNTMLVTLWVFIGIEGAVVS 221 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHh-CchhcccccCccC-C-------CcccchHHHHHHHHHHHHHHHHhHHHHHHH
Confidence 444444444333322222222222221 1111111100000 0 001123346678888999999999999999
Q ss_pred HhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhc
Q 010376 295 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAF 334 (512)
Q Consensus 295 ~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~f 334 (512)
.+|+|| + |+.+|++..+..+++++|++.........
T Consensus 222 a~E~k~-~---r~iPrai~~~~~i~~~~Yil~~~~~~~~~ 257 (473)
T TIGR00905 222 SGRAKN-K---SDVGKATVLGTLGALVIYILITLLSLGVL 257 (473)
T ss_pred HHHHhc-c---ccchHHHHHHHHHHHHHHHHHHHHHHhCc
Confidence 999999 5 99999999999999999998776644433
No 27
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=99.69 E-value=9.6e-14 Score=144.49 Aligned_cols=252 Identities=16% Similarity=0.097 Sum_probs=159.4
Q ss_pred CCcccccccHHHHHHHHHhhhhhhhhhHHH-HHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 010376 55 DGRLKRTGNFWTTSSHIITAVIGSGVLSLA-WAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 55 ~~~~~~~~s~~~a~~~li~~~iG~GiL~lP-~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
+.+++|+.+.++..+..+++++|+|++..| .+.+++|.. +++..++.+++....+..+.|...+.+. .| .+.+
T Consensus 7 ~~~~~~~L~~~~~~~i~ig~~IGsGif~~~g~~~~~~G~~-~~i~~~i~~v~~~~~a~~~aEl~s~~P~-~G----g~~~ 80 (452)
T TIGR01773 7 GLKLPNGLKTRHVTMLSIAGVIGAGLFVGSGSAIASAGPA-ALLAYLLAGLLVVFIMRMLGEMAVANPD-TG----SFST 80 (452)
T ss_pred hHhHhCcCcHHHHHHHHHhhhhhchHHHhhHHHHHhcCCH-HHHHHHHHHHHHHHHHHHHHHHHHhcCC-CC----CHHH
Confidence 345788899999999999999999999999 557788875 6788888999999999999997765443 22 3344
Q ss_pred HHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHH-HHHHhhccCCCc
Q 010376 134 AVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFG-IIEVLFSQIPDF 212 (512)
Q Consensus 134 l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~-~~~~pl~~~~~l 212 (512)
.+++.+||+..++..|..++.....+.+.....+..+..+.+. .+ .|.+... +++..+.-.+..
T Consensus 81 ~~~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~l~~~~~~-------------~~--~~~~~~~~~~~~~~~n~~gv 145 (452)
T TIGR01773 81 YADDAIGRWAGFTIGWLYWWFWVLVIPLEAIAAAGILQYWFPD-------------IP--LWLFSLILTIVLTLTNLYSV 145 (452)
T ss_pred HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-------------Cc--HHHHHHHHHHHHHHHHHHhc
Confidence 5667799999999999999888777777777777777655421 11 1221111 111111111233
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccc-ccccccCCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 010376 213 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGI-SIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 291 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i 291 (512)
+....+..+..+..+..+++.+..++.....+.... +..+. ++.++ ....+.++.++..++....|+|.|.+.+
T Consensus 146 ~~~~~~~~~~~~~ki~~l~~~ii~~~~~~~~~~~~~-~~~~~~~~~~~----~~~~~~g~~~~~~a~~~~~~af~G~e~~ 220 (452)
T TIGR01773 146 KSYGEFEFWFALIKVIAIIAFIILGAVAIFGFAPGS-EVSGFSNLTGK----GGFFPNGIGAVLLAILVTMFSFMGTEIV 220 (452)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCC-CCCccccccCC----CCcCcccHHHHHHHHHHHHHHhccHHHH
Confidence 334433333333322222222222222111111100 00000 00000 0001223446889999999999999999
Q ss_pred HhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 292 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 292 ~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
..+.+|+|||+ |+.||++..+.....++|++.-.......+
T Consensus 221 ~~~a~E~k~P~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~p 261 (452)
T TIGR01773 221 TIAAAESSNPI---KSITRATNSVIWRIIVFYLGSIFIVVALLP 261 (452)
T ss_pred hHHHHhhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHeeEeC
Confidence 99999999997 899999998899899999986554444433
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=99.69 E-value=1e-13 Score=144.72 Aligned_cols=245 Identities=14% Similarity=0.083 Sum_probs=153.0
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~-af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.+.+|+.+.++.....++++||+|++..|. +++++|.. .+...++.+++....+..+.|.....+ .. .++.+.
T Consensus 16 ~~l~r~l~~~~~~~i~vG~~IGsGif~~~g~~~~~aGp~-~i~~~~i~~i~~~~~~~s~aEl~s~~~-~~----~~~~~y 89 (469)
T PRK11049 16 QSLRRNLTNRHIQLIAIGGAIGTGLFMGSGKTISLAGPS-IIFVYMIIGFMLFFVMRAMGELLLSNL-EY----KSFSDF 89 (469)
T ss_pred hhhhccCcHHHHHHHHHhhHHHhHHHHHhhHHHhhcCcH-HHHHHHHHHHHHHHHHHHHHHHHHhcC-CC----CcHHHH
Confidence 348888999999999999999999999766 58888873 577777888888888888888654311 11 245567
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
+++.+||..++++.|..++.......+.....+.++..+.+. .....+.++..+++..+ |+..
T Consensus 90 a~~~~g~~~gf~~gW~~~~~~~~~~~a~~~a~~~~~~~~~p~-------------~~~~~~~~~~~~~~~~i----N~~g 152 (469)
T PRK11049 90 ASDLLGPWAGYFTGWTYWFCWVVTGIADVVAITAYAQFWFPD-------------LSDWVASLAVVLLLLSL----NLAT 152 (469)
T ss_pred HHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-------------CcHHHHHHHHHHHHHHH----HHHh
Confidence 788899999999999999877655555555666555544321 11111111211112222 4444
Q ss_pred hhHHHHHHHHHH---HHHHHHHHhhhhhhhhcCC-CCCC---CccccccccccCCCcccchhhHHHHHHHHHHHHHHhcc
Q 010376 215 VWWLSIVAAIMS---FTYSTAGLGLGIGKVAGNR-SFKG---SLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSF 287 (512)
Q Consensus 215 l~~~s~~~~~~~---~~~~~iii~~~i~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~ 287 (512)
.+..+.++.+.+ +..+++.++.++.....+. ..++ ...+. ++. ....+.++.++..++....|+|.|
T Consensus 153 ~~~~~~i~~~~~~~kl~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~-~~~-----~~~~p~g~~~~~~~~~~~~~af~G 226 (469)
T PRK11049 153 VKMFGEMEFWFAMIKIVAIVALIVVGLVMVAMHFQSPTGVEASFAHL-WND-----GGMFPKGLSGFFAGFQIAVFAFVG 226 (469)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccccc-CCC-----CCCCcccHHHHHHHHHHHHHHHhc
Confidence 444444443333 2222222222222221110 0000 01100 000 011123345678899999999999
Q ss_pred chhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhh
Q 010376 288 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYA 332 (512)
Q Consensus 288 ~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~ 332 (512)
.+.+....+|+|||+ |+++|++..+...+.++|++.......
T Consensus 227 ~e~~~~~a~E~knP~---r~iPrai~~~~~~~~~~y~l~~~~~~~ 268 (469)
T PRK11049 227 IELVGTTAAETKDPE---KSLPRAINSIPIRIIMFYVFALIVIMS 268 (469)
T ss_pred HHHHHHHHHHhcCHh---hHHHHHHHHHHHHHHHHHHHHHHHHee
Confidence 999999999999997 899999987787888888876655543
No 29
>PRK11387 S-methylmethionine transporter; Provisional
Probab=99.68 E-value=1.3e-13 Score=144.06 Aligned_cols=249 Identities=15% Similarity=0.060 Sum_probs=152.2
Q ss_pred cccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~ 135 (512)
+.+|+.+.++.+...+++++|+|++..|.. .+.+|....++..++.+++.......+.|.....+. .| ..|. ..
T Consensus 11 ~l~r~L~~~~~~~l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~~~~~~~~~~aELas~~P~-aG---G~y~-y~ 85 (471)
T PRK11387 11 QFKRTMKVRHLVMLSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGALVVYLVMQCLGELSVAMPE-TG---AFHV-YA 85 (471)
T ss_pred hhhhcCcHHHHHHHHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC---CHHH-HH
Confidence 477889999999999999999999988777 567786545778888899999999999997766443 23 2444 44
Q ss_pred HHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchh
Q 010376 136 KANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQV 215 (512)
Q Consensus 136 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 215 (512)
++.+|+..++++.|..++.....+.......+..+..+.+ ..+...+.++..+++..+ |+...
T Consensus 86 ~~~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~p-------------~~~~~~~~~~~~~~~~~i----n~~gv 148 (471)
T PRK11387 86 ARYLGPATGYTVAWLYWLTWTVALGSSLTAAGFCMQYWFP-------------QVPVWPWCLLFCALIFGL----NVVST 148 (471)
T ss_pred HHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccC-------------cCcHHHHHHHHHHHHHHH----HHHhH
Confidence 5559999999999998887766655544444444433221 011111222222222222 33333
Q ss_pred hHHHHHHHHH---HHHHHHHHHhhhhhhhhcCCCC-C-CCcccc-ccccccCCCcccchhhHHHHHHHHHHHHHHhccch
Q 010376 216 WWLSIVAAIM---SFTYSTAGLGLGIGKVAGNRSF-K-GSLTGI-SIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 289 (512)
Q Consensus 216 ~~~s~~~~~~---~~~~~~iii~~~i~~~~~~~~~-~-~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 289 (512)
+..+.+..+. .+..+++.+..++......... + +..+.. ++.. ....+.+..++..++....|+|.|.+
T Consensus 149 k~~~~~~~~~~~~ki~~l~~~ii~g~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~g~~~~~~~~~~~~faf~G~e 223 (471)
T PRK11387 149 RFFAEGEFWFSLIKVVTILAFIVLGGAAIFGFIPMQDGSPAPGLRNLTA-----EGWFPHGGLPILMTMVAVNFAFSGTE 223 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCCcccccCC-----CCCCcccHHHHHHHHHHHHHHHcCHH
Confidence 4333333222 2221212222222211110000 0 000000 0000 00011233467788888999999999
Q ss_pred hhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 290 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 290 ~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
.+....+|+|||+ |+++|++..+..++.++|++..+......+
T Consensus 224 ~~~~~a~E~knP~---r~iPrAi~~~~~~~~~~y~~~~~~~~~~~p 266 (471)
T PRK11387 224 LIGIAAGETENPA---KVIPVAIRTTIARLVIFFVGTVLVLAALIP 266 (471)
T ss_pred HHHHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999997 899999999999999999987765544444
No 30
>PRK10836 lysine transporter; Provisional
Probab=99.68 E-value=1.7e-13 Score=143.73 Aligned_cols=253 Identities=11% Similarity=-0.002 Sum_probs=147.6
Q ss_pred CCCcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 010376 54 DDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYM 132 (512)
Q Consensus 54 ~~~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~ 132 (512)
++.+.+|+.+.++.++..++++||+|++..|.. .+++|....++..++.++++...+..+.|...+.+. .|. .|.
T Consensus 9 ~~~~l~r~L~~~~~~~l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i~g~~~~~~al~~aEL~s~~P~-sGg---~y~ 84 (489)
T PRK10836 9 EAPGLRRELKARHLTMIAIGGSIGTGLFVASGATISQAGPGGALLSYMLIGLMVYFLMTSLGELAAYMPV-SGS---FAT 84 (489)
T ss_pred CcccccccCcHHHHHHHHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHCCC-CCC---HHH
Confidence 345578889999999999999999999999975 778887556888999999999999999998776543 332 333
Q ss_pred HHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCc
Q 010376 133 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 212 (512)
Q Consensus 133 ~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 212 (512)
.+++.+|+..++++.|..++................+..+.+ ..+...+..+..+++..+.+ ...
T Consensus 85 -y~~~~~g~~~gf~~Gw~~~~~~~~~~a~~~~a~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~lN~-~gv 149 (489)
T PRK10836 85 -YGQNYVEEGFGFALGWNYWYNWAVTIAVDLVAAQLVMSWWFP-------------DTPGWIWSALFLGVIFLLNY-ISV 149 (489)
T ss_pred -HHHHHcChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcCC-------------CCchHHHHHHHHHHHHHHHH-Hcc
Confidence 344558999999999987765444333222233322332221 01111111222222222211 123
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhh---hcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccch
Q 010376 213 DQVWWLSIVAAIMSFTYSTAGLGLGIGKV---AGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 289 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~~~~~iii~~~i~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 289 (512)
+..+....+..+..+..++..+..++... ..+.. +.... ++..+ ..+...++..+..+.....|+|.|.+
T Consensus 150 ~~~~~~~~~~~~~ki~~~~~~i~~~~~~~~~~~~~~~-~~~~~--~~~~~----~~~~~~g~~~~~~~~~~~~faf~G~e 222 (489)
T PRK10836 150 RGFGEAEYWFSLIKVTTVIVFIIVGVLMIIGIFKGAE-PAGWS--NWTIG----DAPFAGGFAAMIGVAMIVGFSFQGTE 222 (489)
T ss_pred hhhhhhHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCC-CCccc--cCCCC----CCCCcccHHHHHHHHHHHHHHHccHH
Confidence 32222222222222211111111111111 11110 00011 11100 00111233455555666779999999
Q ss_pred hhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 290 ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 290 ~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
.+..+.+|+|||+ |+.+|++..++..++++|++....-....+
T Consensus 223 ~~~~~a~E~knP~---r~iPrAi~~~~~~v~~~Yvl~~~~~~~~vp 265 (489)
T PRK10836 223 LIGIAAGESEDPA---KNIPRAVRQVFWRILLFYVFAILIISLIIP 265 (489)
T ss_pred HHHHHHHHhcCHH---HHHHHHHHHHHHHHHHHHHHHHHHHheecC
Confidence 9999999999997 899999999999999999987665544443
No 31
>PRK10580 proY putative proline-specific permease; Provisional
Probab=99.67 E-value=3.8e-13 Score=140.05 Aligned_cols=246 Identities=15% Similarity=0.058 Sum_probs=151.5
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.+.+|+.+.++.++..+++++|+|++..|.. .+.+|.. .++..++.+++....+..+.|...+.+. .| ..|. .
T Consensus 5 ~~l~r~L~~~~~~~i~vg~~IG~Gif~~~g~~~~~aG~~-~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~G---g~y~-y 78 (457)
T PRK10580 5 NKLKRGLSTRHIRFMALGSAIGTGLFYGSADAIKMAGPS-VLLAYIIGGVAAYIIMRALGEMSVHNPA-AS---SFSR-Y 78 (457)
T ss_pred ccccccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC---CHHH-H
Confidence 4577889999999999999999999999877 6677874 5888888999999999999998765442 22 2444 3
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
+++.+||..++++.|..++.....+.+.....+..+..+.+. .+...+.+...++...+ -.+..+.
T Consensus 79 ~~~~~G~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~l-n~~gv~~ 144 (457)
T PRK10580 79 AQENLGPLAGYITGWTYCFEILIVAIADVTAFGIYMGVWFPT-------------VPHWIWVLSVVLIICAV-NLMSVKV 144 (457)
T ss_pred HHHHcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC-------------CChHHHHHHHHHHHHHH-HHccchh
Confidence 456699999999999988777665655555555555544321 11112222222222222 1223343
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhh---hhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 010376 215 VWWLSIVAAIMSFTYSTAGLGLGIGK---VAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 291 (512)
Q Consensus 215 l~~~s~~~~~~~~~~~~iii~~~i~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i 291 (512)
...+..+..+..+..+++.+..++.- ...+...+....+ .+..+ ...+.++.+...++....|+|.|.+..
T Consensus 145 ~~~~~~~~~~~~~~~l~~~ii~~~~i~~~~~~~~~~~~~~~~-~~~~~-----~~~~~g~~~~~~~~~~~~fsf~G~e~~ 218 (457)
T PRK10580 145 FGELEFWFSFFKVATIIIMIVAGIGIIIWGIGNGGQPTGIHN-LWSNG-----GFFSNGWLGMVMSLQMVMFAYGGIEII 218 (457)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCCCccc-cCCCC-----CCCCcchHHHHHHHHHHHHHHhCHHHH
Confidence 33333332222222111111111110 1111000000000 01100 111233446778899999999999999
Q ss_pred HhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHh
Q 010376 292 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 330 (512)
Q Consensus 292 ~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~g 330 (512)
....+|+|||+ |+.+|++..+.....++|+.....-
T Consensus 219 ~~~a~E~knP~---k~iPrAi~~~~~~~~~~y~~~~~~~ 254 (457)
T PRK10580 219 GITAGEAKDPE---KSIPRAINSVPMRILVFYVGTLFVI 254 (457)
T ss_pred HHHHHHhcChh---hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 8899999988888888888765444
No 32
>TIGR00930 2a30 K-Cl cotransporter.
Probab=99.67 E-value=2.2e-13 Score=150.91 Aligned_cols=259 Identities=16% Similarity=0.104 Sum_probs=164.9
Q ss_pred cccccccHHHHHHHH-Hhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 57 RLKRTGNFWTTSSHI-ITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 57 ~~~~~~s~~~a~~~l-i~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
...++.+++.+++.- +.+|+|+|+ +.+++...++|...+++.+++.++++..++..+.+......++.| ..|..+
T Consensus 73 ~~~~~lG~~~GV~~~~~~nIiGv~iFlr~~~Vvg~aG~~~sll~~~la~~vtlltaLS~seiaTng~p~aG---G~Y~yi 149 (953)
T TIGR00930 73 AGAVKFGWVMGVLVPCLLNIWGVILFLRLSWIVGQAGIGLSLLIILLCCCVTTITGLSMSAIATNGVVKGG---GAYYLI 149 (953)
T ss_pred CCCcccceeEeeeHhhhHhHheeeeeeeHHHHHHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc---HHHHHH
Confidence 345677888888888 999999999 456777889998888999999999999999999997765222233 378777
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
.+. ||+..+..+.|..++.+...+..|.+..++++..+++..+.... ... ......+.++..+++..+ ++..
T Consensus 150 sra-lGp~~Gf~iG~~~~la~~va~A~~~~Gf~eyl~~lf~~~~~~~~--~~~-~~~~~iia~i~l~ll~~I----n~~G 221 (953)
T TIGR00930 150 SRS-LGPEFGGSIGLIFAFANAVAVAMYVVGFAETVLDLLRENGSKIM--VDP-INDIRIYGTVTVVVLLGI----SFAG 221 (953)
T ss_pred HHH-hCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccccc--cCc-cccchHHHHHHHHHHHHH----HHhh
Confidence 666 99999999999999988888999999999999888753211000 000 001111222222222222 4555
Q ss_pred hhHHHHHHHHHHHHHHHHHHhhhhhhhhcCC-CCCCCccccccccccCCCc--ccchhhHHHHHHHHHHHHHHhccchhh
Q 010376 215 VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNR-SFKGSLTGISIGTLTSAGT--VTGTQKLWRSLQALGAIAFAYSFSIIL 291 (512)
Q Consensus 215 l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~faf~~~~~i 291 (512)
+++.+.++.++++..++.++...+....... .......+.+... ..+. +.......+++..++++.+||.|....
T Consensus 222 vk~~ak~q~vl~vi~ll~ll~~iig~~~~~~~~~~~g~~~~~~~~--f~~n~~p~~~~~~~~f~~~~ai~F~A~tGi~ag 299 (953)
T TIGR00930 222 MEWENKAQVLFLVIVLLSILNIFVGTIIPAFDKPAKGFFGLGNEI--FSENFIPGIPGPEGGFFSLFGIFFPSVTGILAG 299 (953)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHheeeecCCCCCccceeeccchh--hhhccCCCCCCcccHHHHHHHHHHHHHHHHHHH
Confidence 6666666666554322221111111111100 0000000000000 0000 000011113667788888999999999
Q ss_pred HhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 010376 292 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 331 (512)
Q Consensus 292 ~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy 331 (512)
..+.+|+|||+ |++++++..++.+++++|+++.++..
T Consensus 300 an~sgElKnP~---r~IPratl~ai~i~~vlYllv~~~~~ 336 (953)
T TIGR00930 300 ANISGDLKDPQ---KAIPKGTLLAILTTTVVYLGSVVLFG 336 (953)
T ss_pred HHHHHhccChh---hhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999998 89999999999999999999875433
No 33
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=99.67 E-value=2.7e-13 Score=142.21 Aligned_cols=250 Identities=12% Similarity=0.017 Sum_probs=155.1
Q ss_pred cccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 010376 59 KRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
+|+.+.++.....+++++|+|++..|.. .+.+|....++..++.+++....+..+.|.....+... ..|...+++
T Consensus 1 ~r~L~~~~~~~l~vg~~IGsGif~~~~~~~~~~Gp~~~i~~~~i~~~~~~~~a~~~aEl~s~~P~~g----G~~~~~~~~ 76 (478)
T TIGR00913 1 KKSLKQRHIQMIALGGTIGTGLLVGSGTALATGGPAGLLIGYAIMGSIIYCVMQSLGEMATFYPVVS----GSFATYASR 76 (478)
T ss_pred CCCCcHHHHHHHHHhccccchhhhcchhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCC----CCHHHHHHH
Confidence 3678899999999999999999887655 77778654467788888899999999999876644222 256667778
Q ss_pred hhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhH
Q 010376 138 NLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWW 217 (512)
Q Consensus 138 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 217 (512)
.+|+..++++.|..++.....+.+.....+..+..+.+ ..+...+..+..+++..+ -.+..+..+.
T Consensus 77 ~~g~~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~~~~~~~i-n~~gv~~~~~ 142 (478)
T TIGR00913 77 FVDPAFGFAVGWNYWLQWLIVLPLELVTASMTIQYWTD-------------KVNPAVWIAIFYVFIVII-NLFGVKGYGE 142 (478)
T ss_pred HcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-------------CCCHHHHHHHHHHHHHHH-HHhcchHHHH
Confidence 89999999999999888877777777777776654321 111112222222222222 1223344333
Q ss_pred HHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhh
Q 010376 218 LSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDT 297 (512)
Q Consensus 218 ~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~e 297 (512)
++.+.....+..++..+..++.....+...+......++.++..-+.......+.++..++....|+|.|.+....+.+|
T Consensus 143 ~~~~~~~~ki~~l~~~ii~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E 222 (478)
T TIGR00913 143 AEFWFSSIKILAIIGFIILSIILNCGGGPNHGYIGFRYWHDPGAFAGGTIGGRFKGVCSVFVTAAFSFGGTELVALTAGE 222 (478)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCCCcccccCCCCCCCCCCccchHHHHHHHHHHHHhhhccHHHHHHHHHh
Confidence 33333322222222222222222221111111000000000000000000112456778899999999999999999999
Q ss_pred cCCCchhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 010376 298 IRSPPAEYKTMKKATLFSIIVTTTFYLLCGCM 329 (512)
Q Consensus 298 m~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~ 329 (512)
+|||+ |+++|++..+..++.++|++..+.
T Consensus 223 ~knP~---r~iPrai~~~~~~~~~~Y~l~~~~ 251 (478)
T TIGR00913 223 AANPR---KSIPRAAKRTFWRILVFYILTLFL 251 (478)
T ss_pred hcChh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99997 899999999999999999987544
No 34
>PRK11021 putative transporter; Provisional
Probab=99.67 E-value=4.4e-13 Score=137.69 Aligned_cols=229 Identities=12% Similarity=0.095 Sum_probs=145.7
Q ss_pred cHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCC
Q 010376 63 NFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG 141 (512)
Q Consensus 63 s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 141 (512)
+.++++...+++|+|+|++.+|.. .+.+|. .+++..++.+++....+..+.|...+.+. .|. .|.. .++.+||
T Consensus 2 g~~~~~~l~~g~~IGsGif~~~g~~~~~aG~-~~~~~~~i~~~~~~~~al~~aEl~s~~P~-aGG---~y~y-~~~~~G~ 75 (410)
T PRK11021 2 GLWQGIGLLSTSLLGTGVFAVPALAALVAGN-NSLWAWPLLILLIFPIAIVFARLGRHFPH-AGG---PAHF-VGMAFGP 75 (410)
T ss_pred cHHHHHHHHHHHHHhhHHHHhHHHHHHhcCc-hHHHHHHHHHHHHHHHHHHHHHHHHhCCC-CCC---HHHh-HHHHhCc
Confidence 578999999999999999999888 556675 46888889999999999999998776553 232 3443 3455999
Q ss_pred cceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHH
Q 010376 142 KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIV 221 (512)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~ 221 (512)
+.+++..|..++.......+........+..+++. . ... .+. +..+++..+..+ |+...+..+.+
T Consensus 76 ~~gf~~gw~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~--~~~--~~~-~~~~~~~~~~~l-n~~Gv~~~~~~ 140 (410)
T PRK11021 76 RLGRVTGWLFLSVIPVGLPAALQIAAGFGQALFGW---------S--SWQ--LLL-AELLTLALLWLL-NLRGASSSANL 140 (410)
T ss_pred hhHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCC---------C--Cch--HHH-HHHHHHHHHHHH-HHhhHHHHHHH
Confidence 99999999887655444444444444555544421 0 111 111 111111111122 44555555555
Q ss_pred HHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCCC
Q 010376 222 AAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSP 301 (512)
Q Consensus 222 ~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p 301 (512)
+.+..+..+.+++ .... ..+. ...+. .+. .....++.++..++....|+|.|.+.+....+|+|||
T Consensus 141 ~~~~~~~~~~i~~-~~~~--~~~~-~~~~~---~~~-------~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a~E~k~P 206 (410)
T PRK11021 141 QTVIALLIVALVV-AIWW--AGDI-KPADI---PFP-------APGSIEWSGLFAALGVMFWCFVGIEAFAHLASEFKNP 206 (410)
T ss_pred HHHHHHHHHHHHH-HHHH--HcCC-chhcC---CCC-------CCCCccHHHHHHHHHHHHHHHhcHHHHHhhHHhccCc
Confidence 5554432221111 1111 1111 01111 110 0011244577888999999999999999999999999
Q ss_pred chhhhhhhhHHHHHHHHHHHHHHHHHhH
Q 010376 302 PAEYKTMKKATLFSIIVTTTFYLLCGCM 329 (512)
Q Consensus 302 ~~~~~~~~~~i~~s~~i~~~~Y~~~g~~ 329 (512)
+ |++||++..+..++.++|++....
T Consensus 207 ~---k~iPrAi~~~~~~~~~lYil~~~~ 231 (410)
T PRK11021 207 E---RDFPRALMIGLLLAGLVYWACTVV 231 (410)
T ss_pred c---ccccHHHHHHHHHHHHHHHHHHHH
Confidence 7 899999999999999999987654
No 35
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=99.67 E-value=2.6e-13 Score=141.72 Aligned_cols=366 Identities=12% Similarity=0.094 Sum_probs=197.8
Q ss_pred ccccHHHHHHHHHhhhhhhhhhHHHHHH-HHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 010376 60 RTGNFWTTSSHIITAVIGSGVLSLAWAI-AQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (512)
Q Consensus 60 ~~~s~~~a~~~li~~~iG~GiL~lP~af-~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 138 (512)
|+.|.++.+...+++++|+|++.+|... +.+|....++..++.++.....+..+.|...+.+...|. .|.. +++.
T Consensus 1 ~~lgl~~~~~l~vg~~IGsGif~~~~~~~~~ag~~~~l~~w~i~~~~~~~~al~~aeL~s~~P~~gGG---~y~y-~~~~ 76 (468)
T TIGR03810 1 KKLGLGALTALVVGSMIGSGIFSLPSDMAAGAAAGAVLIGWVITGVGMLALAFSFQNLANKKPELDGG---VYSY-AKAG 76 (468)
T ss_pred CCCCHHHHHHHHHHhHHhhHHHHhHHHHHHhhchHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCCCCC---hhhh-HHhH
Confidence 4678999999999999999999999884 456755456667888888888888888877664432211 3333 5666
Q ss_pred hCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchh-hHHHHHHHHhhcc--CCCcchh
Q 010376 139 LGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGY-MITFGIIEVLFSQ--IPDFDQV 215 (512)
Q Consensus 139 ~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~pl~~--~~~l~~l 215 (512)
|||+.+++..|..++.......++.......+..+++... .....+ .++..++++.+.. .+..+..
T Consensus 77 fG~~~gf~~gw~~w~~~~~~~~~~~~~~~~~~~~~~p~~~-----------~~~~~~~~~~~~~~~~~~~~ln~~Gv~~~ 145 (468)
T TIGR03810 77 FGPFMGFISAWGYWLSAWLGNVAYATLLFSTLGYFFPIFG-----------GGNNPPSIIGASVLLWCVHFLVLRGVEGA 145 (468)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccc-----------CCCcHHHHHHHHHHHHHHHHHHHhCHHHH
Confidence 9999999999999887766666776666666655443110 011111 1111111111211 2344444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHH
Q 010376 216 WWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQ 295 (512)
Q Consensus 216 ~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 295 (512)
+.++.+..+..+..+++.+..++... +++....+. ++.. .+.......+.++..++....|+|.|.+....+.
T Consensus 146 ~~i~~i~~~~ki~~l~~~ii~~~~~~-~~~~~~~~~----~~~~--~~~~~~~~~~~~~~~~~~~~~~~f~G~e~~~~~a 218 (468)
T TIGR03810 146 AFINTITTIAKLVPLFVFIVIGIFAF-KGDTFTNDF----WGNA--NGGFSLGSVMTQVKNMMLVTVWVFIGIEGASMLS 218 (468)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh-cHhhcCccc----cccc--cccCccccHHHHHHHHHHHHHHHHHhHhHHhhhH
Confidence 44444333333322222222222211 111111100 0000 0000111123356678889999999999999999
Q ss_pred hhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC----CCcc----cccccccCCChHHHHHHHHHHHHHHH
Q 010376 296 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL----APNN----LLTGFGFYNPYWLIDIANAAIVVHLV 367 (512)
Q Consensus 296 ~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~----~~~~----il~~~~~~~~~~~~~i~~~~~~i~~~ 367 (512)
+|.||+ |+.+|++..+..+++++|+++.+..+...+.+ .+++ +..+. ...+...+..+..++...
T Consensus 219 ~e~k~~----k~ip~ai~~~~~~v~~lY~l~~~~~~g~~~~~~l~~~~~p~~~~~~~~~---~g~~~~~~i~~~~~is~~ 291 (468)
T TIGR03810 219 ARAEKR----SDVGKATVIGLIGVLAIYVLVSVLSYGIMTQAQLAGLKNPSMAYVLEHM---VGTWGAVLINIGLIISIL 291 (468)
T ss_pred hhccCc----ccchHHHHHHHHHHHHHHHHHHHHHHhCcCHHHHhcCCCchHHHHHHHH---cchHHHHHHHHHHHHHHH
Confidence 999985 89999999999999999999887766544421 1111 11111 113444555555566655
Q ss_pred HhhhhhccchHHHHHHHhhc-cCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHh-ccchHHHHHHhhh
Q 010376 368 GAYQVFCQPLFAFVEKWSAK-KWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISML-LPFFNDVVGILGA 445 (512)
Q Consensus 368 ~s~pl~~~p~~~~l~~~~~~-~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~-vp~~~~i~~l~Ga 445 (512)
.+.--.+...-+.+...-.+ ..|+ . ..|..+.+.| ..-..+...+..+..++..+ -+.++.+.++.+
T Consensus 292 ~~~~~~~~~~sR~~~a~ardg~lP~-~-f~k~~~~~tP--------~~al~~~~~i~~~~~l~~~~~~~~~~~l~~~~~- 360 (468)
T TIGR03810 292 GAWLSWTLLPAEIPLLMAKDKLMPK-Y-FGKENANGAP--------TNALWLTNGLIQIFLLTTLFSEQAYNFAISLAT- 360 (468)
T ss_pred HHHHHHHHHHHHHHHHHHhCCCccH-H-HHhhCCCCCC--------HHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHH-
Confidence 55544333333333332211 1121 1 1111111223 11112222221111111111 133555666543
Q ss_pred hhhhhhhhhhhhhhhhhhccC
Q 010376 446 MGFWPLTVYFPIEMYKAQKKI 466 (512)
Q Consensus 446 ~~~~~l~fi~P~~~~l~~~~~ 466 (512)
....+.|+++++.+++.+++
T Consensus 361 -~~~li~y~~~~~~~~~l~~~ 380 (468)
T TIGR03810 361 -SAILVPYLWSAAYQVKLSWR 380 (468)
T ss_pred -HHHHHHHHHHHHHHHHHHHh
Confidence 35568999999988887543
No 36
>TIGR00909 2A0306 amino acid transporter.
Probab=99.63 E-value=6.5e-13 Score=137.44 Aligned_cols=246 Identities=14% Similarity=0.114 Sum_probs=160.2
Q ss_pred cccccHHHHHHHHHhhhhhhhhhHHHHHHH-HhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 010376 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIA-QLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~-~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
+|+.|.++.++..+++++|+|++.+|.... ..|.. .++..++.+++....+..+.|..++.+. .|. .|... ++
T Consensus 2 ~r~l~~~~~~~~~i~~~ig~gi~~~~~~~~~~~G~~-~~l~~li~~~~~~~~a~~~~el~~~~p~-~Gg---~y~~~-~~ 75 (429)
T TIGR00909 2 SRELGLFDLTMLGIGAMIGTGIFVVTGIAAGKAGPA-VILSFVLAGLTALFIALVYAELAAMLPV-AGS---PYTYA-YE 75 (429)
T ss_pred CccccHHHHHHHHHhhhhcchHHHhHHHHHHHcCCH-HHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCc---ceeeH-HH
Confidence 577899999999999999999999997744 45653 5666777888888888899998766543 222 33333 34
Q ss_pred hhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCccc---ccchh--hHHHHHHHHhhccCCCc
Q 010376 138 NLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHM---SSNGY--MITFGIIEVLFSQIPDF 212 (512)
Q Consensus 138 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~--~~i~~~~~~pl~~~~~l 212 (512)
.+||+.+++..|..++.....+..+....++.+..+++.... +. +..+.. ....+ ..+..++++-+...+..
T Consensus 76 ~~G~~~g~~~gw~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~~-~~~~~~~~~~~~~~~~~~i~~~~~~~~l~~~g~ 152 (429)
T TIGR00909 76 AMGELTAFIIGWSLWLEYGVAVAAVAVGWGGYLQEFLPGVGL--DL-PAVLTAKPGNGGVFNLPALLIVLFLTYILYLGA 152 (429)
T ss_pred HhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccc--cC-chhhhcCCcccccccHHHHHHHHHHHHHHHhCc
Confidence 599999999999999888888888888888888877652100 00 000000 00111 11222222222223355
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 010376 213 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 292 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~ 292 (512)
+...+++.+.....+..+++.+..+..+... +..++ ..+.+..++..++...+|+|.|.+...
T Consensus 153 ~~~~~~~~v~~~~~i~~l~~~~~~~~~~~~~-~~~~~----------------~~~~~~~~~~~~~~~~~~af~G~e~~~ 215 (429)
T TIGR00909 153 KESGKVNDILVVLKVAALLLFAALGAIHFAS-NNYTP----------------FMPMGFGGVGAATALVFFAFIGFEAIS 215 (429)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhHHHhhCcH-HhcCC----------------CCCCcHHHHHHHHHHHHHHHhhHHHHH
Confidence 6666666655555543332222222222111 11100 001123467788999999999999999
Q ss_pred hHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhh
Q 010376 293 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 333 (512)
Q Consensus 293 ~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~ 333 (512)
...+|+|||+ |+.+|++..+..++.++|++........
T Consensus 216 ~~~~E~~~p~---r~ip~ai~~~~~~~~v~Yil~~~~~~~~ 253 (429)
T TIGR00909 216 TAAEEVKNPE---RDIPKAIILSLIVVTLLYVLVAAVILGA 253 (429)
T ss_pred hhHHhccCcc---ccccHHHHHHHHHHHHHHHHHHHHHhcC
Confidence 9999999997 8999999999999999999987665543
No 37
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=99.63 E-value=6.8e-13 Score=139.83 Aligned_cols=254 Identities=12% Similarity=0.096 Sum_probs=150.9
Q ss_pred CCCcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChh-HHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 010376 54 DDGRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWV-AGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTY 131 (512)
Q Consensus 54 ~~~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~-~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y 131 (512)
++.+.+|+.+.++.+...+++++|+|++..|.. .+++|.. ..++..++.++++...+..+.|.....+. .| ..|
T Consensus 36 ~~~~l~r~l~~~~~~~l~vg~iiGsGif~~~~~~~~~~G~~g~~~~~~ii~~i~~~~~al~~aELas~~P~-sG---G~y 111 (501)
T TIGR00911 36 EAVALKKEITLLSGVGIIVGTIIGSGIFVSPKGVLKNAGSVGLALIMWAVCGIFSIVGALVYAELGTTIPK-SG---GEY 111 (501)
T ss_pred cccccCccccHhHhhHhheeceEEeeEeecHHHHHhhCCChHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CC---chh
Confidence 334578889999999999999999999999876 5666753 22355567778888888889997766443 23 255
Q ss_pred HHHHHHhhCCcceeehHHHHHHHH-HHHHHHHHHHHhhhH-HHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc-
Q 010376 132 MDAVKANLGGKKVIFCGLIQYLNL-FGVAIGYTIAASVSM-MAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ- 208 (512)
Q Consensus 132 ~~l~~~~~G~~~~~~~~~~~~~~~-~g~~i~y~i~~~~~l-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~- 208 (512)
....+ .+||..+++..|..++.. .+.+..+....++++ ..+.+. ...+.....++..+++..+..
T Consensus 112 ~~~~~-~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~~-----------~~~~~~~~~~i~~~~i~~~~~l 179 (501)
T TIGR00911 112 NYILE-VFGPLLAFLRLWIELLVIRPGSQAVNALNFAIYILTPVFPD-----------CEVPEWAIRLVAVLCVLLLTLV 179 (501)
T ss_pred hhHHh-HhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC-----------CCCchHHHHHHHHHHHHHHHHH
Confidence 55544 599999998888665422 333444444445543 222221 011111111222222222222
Q ss_pred -CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhcc
Q 010376 209 -IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSF 287 (512)
Q Consensus 209 -~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~ 287 (512)
.+..+...+++.+..+..+..+++.++.++.....++..+.+.+. .+. ....+..++..++....|+|.|
T Consensus 180 n~~Gvk~~~~~~~i~~~~~l~~l~~~ii~~~~~~~~~~~~~~~~~~-~f~--------~~~~~~~~~~~a~~~~~~af~G 250 (501)
T TIGR00911 180 NCLSVKWATRVQDIFTACKLLALLLIIITGWVQLGKGGVESLNPKN-AFE--------GTETSAGGIVLAFYSGIWAYGG 250 (501)
T ss_pred HHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCccccCccc-ccC--------CCCCcHHHHHHHHHHHHHHHHh
Confidence 223444444444433333322223333333332222111111000 000 0012344677889999999999
Q ss_pred chhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 288 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 288 ~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
...+..+.+|+|||+ |+.+|++..+..+++++|++..+.-....+
T Consensus 251 ~e~~~~~a~E~knP~---r~iPrAi~~s~~~v~~~Y~l~~~a~~~~~~ 295 (501)
T TIGR00911 251 WNYLNFVTEEVKNPY---RTLPIAIIISMPIVTFIYVLTNIAYFTVLS 295 (501)
T ss_pred HHHHhhhHHHhcCch---hhhHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence 999999999999997 899999999999999999998655544443
No 38
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=99.63 E-value=8.2e-13 Score=137.15 Aligned_cols=242 Identities=12% Similarity=-0.002 Sum_probs=152.5
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~ 135 (512)
.+.+|+.|.++.+...++.++|......+.+++..|+..-+...++.+++....+..+.|...+.+. .| ..|...
T Consensus 3 ~~l~r~l~~~~~~~l~~~~~igg~~~~~~~~~~~~G~~~~~~~~~i~~~~~~~~a~~~aEl~s~~P~-~G---g~y~~~- 77 (442)
T TIGR00908 3 RQLKKTLATWQLWGIGVGYVISGDYAGWNFGLAQGGWGGFVVATLLVATMYLTFCFSLAELSTMIPT-AG---GGYGFA- 77 (442)
T ss_pred chhhccCCHHHHHHhHHHHHhhccchhHhhHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-CC---CHHHHH-
Confidence 4477889999999999999998544666888889998655566677777777888889997766443 23 245544
Q ss_pred HHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchh
Q 010376 136 KANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQV 215 (512)
Q Consensus 136 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 215 (512)
++.+||..+++..|..++.......++....++++..+++. .......++...+.. .+ |+...
T Consensus 78 ~~~~G~~~gf~~gw~~~~~~~~~~~~~a~~~~~~l~~~~p~-------------~~~~~~~~~~~~~~~---~l-n~~g~ 140 (442)
T TIGR00908 78 RRAFGPWGGFLAGTAILIEFAFAPPAIACFIGAYCESLFPV-------------GPGWLAALVFYIVFI---GI-NILGV 140 (442)
T ss_pred HHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------------CchhHHHHHHHHHHH---HH-HHHHH
Confidence 55699999999999998888877888888888888776541 011111111111111 12 44444
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHH
Q 010376 216 WWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQ 295 (512)
Q Consensus 216 ~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 295 (512)
+..+.+..+.++..++.++..... ...+....+-.+. .+.. .+...+..+.++..++....|+|.|++....+.
T Consensus 141 ~~~~~i~~~~~~~~~~~l~i~~~~-~~~~~~~~~~~~~-~~~~----~~~~~~~~~~~~~~~~~~~~~af~G~e~~~~~a 214 (442)
T TIGR00908 141 GEAAKLEFVVTAVAIIALGVFIGA-MVPHFDSANLFNG-PQTG----ASSFLPGAYVGVFAAIPFAIWFFLAVEGVAMAA 214 (442)
T ss_pred HHHHhHHHHHHHHHHHHHHHHHHH-HhccCCHHHhccC-CccC----CCCCCCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 555444444443211111111111 1111000000000 0000 001112234467788889999999999999999
Q ss_pred hhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 010376 296 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 328 (512)
Q Consensus 296 ~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~ 328 (512)
+|+|||+ |+.+|++..+..++.++|+..-.
T Consensus 215 eE~k~P~---r~iprai~~s~~~~~~~~~~~~~ 244 (442)
T TIGR00908 215 EETKNPK---RDIPRGLIGAILTLLALAAGILV 244 (442)
T ss_pred HHhcCcc---cccCHHHHHHHHHHHHHHHHHHH
Confidence 9999997 89999999999999998887644
No 39
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=99.60 E-value=1.6e-12 Score=135.11 Aligned_cols=243 Identities=15% Similarity=0.138 Sum_probs=147.4
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhCh-hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGW-VAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~-~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
.+.+|+.|.++.+...++.++|+|++..|.. ....|- ...++..++.++++...+..+.|.....+. .|. .|..
T Consensus 4 ~~L~r~l~~~~~~~l~vg~~ig~Gif~~~g~~~~~~G~~~~~~l~~li~~v~~l~~al~~aEl~s~~P~-~GG---~y~y 79 (445)
T PRK11357 4 QELQRKLGFWAVLAIAVGTTVGSGIFVSVGEVAKAAGTPWLTVLAFVIGGLIVIPQMCVYAELSTAYPE-NGA---DYVY 79 (445)
T ss_pred ccccccccHHHHHHHHHHhheechhccchHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcCC-CCC---ceee
Confidence 3477889999999999999999999999887 445563 335666788888889999999998776543 332 3443
Q ss_pred HHHHhhCCcceeehHHHHHH-HHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc--CC
Q 010376 134 AVKANLGGKKVIFCGLIQYL-NLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ--IP 210 (512)
Q Consensus 134 l~~~~~G~~~~~~~~~~~~~-~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~ 210 (512)
.. +.+||..+++..|.... ........+....++++....+. +......+..+++..+.. .+
T Consensus 80 ~~-~~~g~~~gf~~gw~~~~~~~~~~~a~~a~~~~~y~~~~~~~--------------~~~~~~~~~~~~~~~~~~ln~~ 144 (445)
T PRK11357 80 LK-NAGSRPLAFLSGWASFWANDAPSLSIMALAIVSNLGFLTPI--------------DPLLGKFIAAGLIIAFMLLHLR 144 (445)
T ss_pred HH-HhcCChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--------------chHHHHHHHHHHHHHHHHHHHh
Confidence 33 45999999999887543 33334445555556655443210 001111111111111222 22
Q ss_pred CcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchh
Q 010376 211 DFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSII 290 (512)
Q Consensus 211 ~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~ 290 (512)
..+...+++.+..+..+..+++++..++... .+.+++...+. . ......+.++..++....|+|.|.+.
T Consensus 145 gv~~~~~v~~~~~~~~~~~l~~~ii~g~~~~-~~~~~~~~~~~-~---------~~~~g~~~~~~~~~~~~~~af~G~e~ 213 (445)
T PRK11357 145 SVEGGAAFQTLITIAKIIPFTIVIGLGIFWF-KAENFAAPTTT-A---------IGATGSFMALLAGISATSWSYTGMAS 213 (445)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCccccCCCcc-c---------ccccchHHHHHHHHHHHHHHHhhHHH
Confidence 3333334433333333322222222222222 22111111000 0 00011234667888999999999999
Q ss_pred hHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 010376 291 LLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 331 (512)
Q Consensus 291 i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy 331 (512)
...+.+|+|||+ |+++|++..++.+++++|++......
T Consensus 214 ~~~~a~E~k~P~---r~iP~Ai~~~~~i~~~~Y~l~~~~~~ 251 (445)
T PRK11357 214 ICYMTGEIKNPG---KTMPRALIGSCLLVLVLYTLLALVIS 251 (445)
T ss_pred HHhhHHHhcCcc---ccchHHHHHHHHHHHHHHHHHHHHHH
Confidence 999999999997 89999999999999999998765443
No 40
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=99.58 E-value=5.9e-12 Score=130.54 Aligned_cols=348 Identities=15% Similarity=0.064 Sum_probs=190.2
Q ss_pred HHhhhhhhhhhHHHH-HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceeehHH
Q 010376 71 IITAVIGSGVLSLAW-AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGL 149 (512)
Q Consensus 71 li~~~iG~GiL~lP~-af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 149 (512)
.++++||+|++..|. +.+++|.. .++..++.+++....+..+.|...+.+. .| .....+++.+||+.++++.|
T Consensus 3 ~ig~~IGsGif~~~g~~~~~aG~~-~ll~~~i~gi~~~~~al~~aEL~s~~P~-~G----g~y~y~~~~~G~~~gf~~gw 76 (446)
T PRK10197 3 SIAGVIGASLFVGSSVAIAEAGPA-VLLAYLFAGLLVVMIMRMLAEMAVATPD-TG----SFSTYADKAIGRWAGYTIGW 76 (446)
T ss_pred eecchhHhHHHHHhHHHHHhcChH-HHHHHHHHHHHHHHHHHHHHHHHHhCCC-CC----CHHHHHHHHcChHHHHHHHH
Confidence 468899999998887 58888974 7888899999999999999998766443 22 33344446699999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHHHHHH---
Q 010376 150 IQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMS--- 226 (512)
Q Consensus 150 ~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~--- 226 (512)
..++.....+.......+..+....+ ..+...+.++..++...+ |+...+..+.+..+.+
T Consensus 77 ~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~l~~~~~l----N~~gv~~~~~i~~~~~~~k 139 (446)
T PRK10197 77 LYWWFWVLVIPLEANIAAMILHSWVP-------------GIPIWLFSLVITLALTGS----NLLSVKNYGEFEFWLALCK 139 (446)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhccc-------------cCcHHHHHHHHHHHHHHH----HHHhhHHHhhhHHHHHHHH
Confidence 99887766665555555544443221 111111111111112222 3334444444444333
Q ss_pred HHHHHHHHhhhhhhhhcCCCCCCCcccc-c-cccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCCCchh
Q 010376 227 FTYSTAGLGLGIGKVAGNRSFKGSLTGI-S-IGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAE 304 (512)
Q Consensus 227 ~~~~~iii~~~i~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~ 304 (512)
+...+..+..++... .+........+. + ++.+ ...+..+.++..++....|+|.|.+.+....+|+|||+
T Consensus 140 i~~li~~ii~~~~~~-~g~~~~~~~~~~~~~~~~~-----~~~p~g~~~~~~a~~~~~faf~G~e~~~~~a~E~knP~-- 211 (446)
T PRK10197 140 VIAILAFIFLGAVAI-SGFYPYAEVSGISRLWDSG-----GFMPNGFGAVLSAMLITMFSFMGAEIVTIAAAESDTPE-- 211 (446)
T ss_pred HHHHHHHHHHHHHHh-cCCCCCCCCCcchhcCCCC-----CCCcccHHHHHHHHHHHHHHHhCHHHHHHHHHHhcChh--
Confidence 222222222222211 111100000010 0 1100 11123445788999999999999999999999999997
Q ss_pred hhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCc-----c---cccccccCCChHHHHHHHHHHHHHHHHhhhhhccc
Q 010376 305 YKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN-----N---LLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQP 376 (512)
Q Consensus 305 ~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~-----~---il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p 376 (512)
|+++|++..+...+.++|++..+.--.....+..+ + ..... ...+...+.++..++..+.+..-.+..
T Consensus 212 -r~iPrai~~~~~~i~i~Yil~~~~~~~~~p~~~~~~~~~~~~~~~~~~~---g~~~~~~ii~~~i~~~~~~~~n~~~~~ 287 (446)
T PRK10197 212 -KHIVRATNSVIWRISIFYLCSIFVVVALIPWNMPGLKAVGSYRSVLELL---NIPHAKLIMDCVILLSVTSCLNSALYT 287 (446)
T ss_pred -hhHHHHHHHHHHHHHHHHHHHHHHHheecCcCcccccccCcHHHHHHHc---CchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 89999999999999999998665543333222111 0 11111 123344455555555555555444444
Q ss_pred hHHHHHHHhhcc-CCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhcc--chHHHHHHhhhhhhhhhhh
Q 010376 377 LFAFVEKWSAKK-WPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFNDVVGILGAMGFWPLTV 453 (512)
Q Consensus 377 ~~~~l~~~~~~~-~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~~i~~l~Ga~~~~~l~f 453 (512)
..+.+...-.++ .|+ +..|..+.+.| ..-..+...+.++..+.....| .++.++++.+.. ..+.|
T Consensus 288 ~sR~l~a~ardg~lP~--~~~~~~~~~~P--------~~Ail~~~~~~~l~~l~~~~~~~~~~~~l~~~~~~~--~li~y 355 (446)
T PRK10197 288 ASRMLYSLSRRGDAPA--VMGKINRSKTP--------YVAVLLSTGAAFLTVVVNYYAPAKVFKFLIDSSGAI--ALLVY 355 (446)
T ss_pred HHHHHHHHHcCCCcCH--HHHhhCcCCCc--------HHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHH--HHHHH
Confidence 445555432211 121 11111111223 1112222222222222222223 367777776543 33788
Q ss_pred hhhhhhhhhhcc
Q 010376 454 YFPIEMYKAQKK 465 (512)
Q Consensus 454 i~P~~~~l~~~~ 465 (512)
.++++.+++.+|
T Consensus 356 ~~~~~a~i~lr~ 367 (446)
T PRK10197 356 LVIAVSQLRMRK 367 (446)
T ss_pred HHHHHHHHHHHH
Confidence 889888888755
No 41
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=99.52 E-value=1.5e-11 Score=124.01 Aligned_cols=367 Identities=15% Similarity=0.067 Sum_probs=243.7
Q ss_pred cccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~ 135 (512)
+.+|+.....-.+.-++..||+|. ++.-.+++++|....++..++++.+.+..+..+.|.....+ ..| +|...+
T Consensus 41 ~lkR~LK~RHl~MIAiGG~IGTGLfvgsG~~l~~aGP~g~li~y~i~G~~vy~vm~sLGEma~~~P-~sG----sF~~ya 115 (541)
T COG0833 41 ELKRSLKSRHLQMIAIGGAIGTGLFVGSGKALSQAGPAGLLIAYLIIGIMVYFVMQSLGELAVFYP-VSG----SFSTYA 115 (541)
T ss_pred hhhhhhhHHHHHHHHhccccccceeeecchhhhccCcHHHHHHHHHHHHHHHHHHHHHHHHHhhcC-CCC----chhhhh
Confidence 578888899999999999999999 67899999999999999999999999999999999776655 333 799999
Q ss_pred HHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc--CCCcc
Q 010376 136 KANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ--IPDFD 213 (512)
Q Consensus 136 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~--~~~l~ 213 (512)
.+..++..++.+.|..++....++..-++..+..++.+.+. ..+...|..++.++++.+.+ .|...
T Consensus 116 ~rfvdpa~GFa~gWnYw~~w~v~~~~El~aa~~vi~yW~p~------------~v~~~~w~~iF~~~i~~iN~~~Vk~fG 183 (541)
T COG0833 116 TRFVDPAFGFALGWNYWLNWAVTLPLELTAASLVIQYWFPD------------TVPPWIWIAIFLVLIFLLNLFGVKGFG 183 (541)
T ss_pred hhhcCchHHHHHHHHHHHHHHHHhhHHHHHHHHhhhhhcCC------------CCChHHHHHHHHHHHHHHHHhcccccc
Confidence 99999999999999999999999999999999999987641 13445677776666555544 45666
Q ss_pred hhh-HHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 010376 214 QVW-WLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 292 (512)
Q Consensus 214 ~l~-~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~ 292 (512)
+.. |+|.+-++.++.++++.++. ...+.+.++..-...|. |.-...+++.++...+-+..|||.|...+-
T Consensus 184 E~Efw~s~iKV~~ii~Fii~gii~----~~Gg~~~~~~ig~~yw~-----~pg~F~~gf~g~~~v~v~a~Fsf~GtElvg 254 (541)
T COG0833 184 ETEFWFSSIKVLTIIGFIILGIII----ICGGGPTHGYIGFNYWH-----DPGAFAGGFKGFCSVFVIAAFSFSGTELVG 254 (541)
T ss_pred eehHHHHHHHHHHHHHHHHHHHHH----hcCCCCCCCCcceeeec-----CCCCCCcchHHHHHHHhhheeeeeceeeee
Confidence 666 56777777766443332221 11111112211111111 113445567788899999999999999999
Q ss_pred hHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCccccc-------------ccccCCChHHHHHHH
Q 010376 293 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLT-------------GFGFYNPYWLIDIAN 359 (512)
Q Consensus 293 ~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~-------------~~~~~~~~~~~~i~~ 359 (512)
--..|-+||+ |.+||++.-.+.-..++|++.-++--+.-.- .+++++. .+.-.+-..+..+.|
T Consensus 255 iaAgEs~nP~---K~iPkAik~vfwRIl~FYi~si~~ig~lvPy-~dp~Ll~~~~~~~~~SPFvia~~~~Gi~~~~~imN 330 (541)
T COG0833 255 LAAGESENPR---KSIPKAIKQVFWRILLFYILSIFVIGLLVPY-NDPRLLGNSSSGVAASPFVIAIKNAGIPVAASIMN 330 (541)
T ss_pred eeecccCCch---hhhHHHHHHHHHHHHHHHHHHHHHheEEccC-CCcccccCCcCCccCCChhHhHHhcCCccchHHHH
Confidence 9999999998 8999999999999999998744433222221 1222221 111001123556777
Q ss_pred HHHHHHHHHhhhhhccchHHHHHHHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhcc--chH
Q 010376 360 AAIVVHLVGAYQVFCQPLFAFVEKWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP--FFN 437 (512)
Q Consensus 360 ~~~~i~~~~s~pl~~~p~~~~l~~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp--~~~ 437 (512)
..+++.++++=--.++...+.+..+-..++-.+- ..+-.+...| ..-+..+.++-+++++-+..-. -+.
T Consensus 331 aVIL~svlSa~NS~lYasSR~L~sLA~~g~APk~-f~~~~r~GvP--------~~al~vt~~fg~lafl~~~~~~~~vf~ 401 (541)
T COG0833 331 AVILTSVLSAANSGLYASSRMLYSLAKQGKAPKI-FAKVDRRGVP--------LVALLVTLLFGLLAFLNSSFKETTVFN 401 (541)
T ss_pred HHHHHHHHHHhhccchHHHHHHHHHHhcCCCchH-HHhhCCCCCc--------hHHHHHHHHHHHHHHHHhccCcchHHH
Confidence 7788877777666666667777776543322111 1111111223 2333444444444444444422 255
Q ss_pred HHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 010376 438 DVVGILGAMGFWPLTVYFPIEMYKAQK 464 (512)
Q Consensus 438 ~i~~l~Ga~~~~~l~fi~P~~~~l~~~ 464 (512)
-++++.|. +.+++.+-=++.|++-+
T Consensus 402 wL~~isg~--s~~i~W~~I~~shirFR 426 (541)
T COG0833 402 WLLNISGL--SGFIAWGSICLSHIRFR 426 (541)
T ss_pred HHHHHHHH--HHHHHHHHHHHHHHHHH
Confidence 66666652 23356666677777754
No 42
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=99.50 E-value=2.1e-11 Score=123.04 Aligned_cols=238 Identities=17% Similarity=0.128 Sum_probs=156.8
Q ss_pred cccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhC
Q 010376 61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (512)
Q Consensus 61 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 140 (512)
+.|.+|..+.++++++|+|++.+|....+.+---+.+..++.+++......++.+..++.+. .+..+..++.+|
T Consensus 2 ~is~~q~~~l~~~~~iG~gil~~P~~~~~~a~~~~wi~~ll~~~~~~~~~~~~~~l~~~~p~------~~~~~~~~~~~G 75 (359)
T TIGR00912 2 KISSKQLIFLISSTMIGSGLLTLPALVSQSAGQDGWISIILGGLIIIFLLCLMIKIMSKFPE------KNFSEILSKYLG 75 (359)
T ss_pred cCcHHHHHHHHHHHHHHHHHHhhhHHHHhccCCCeeHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHhh
Confidence 56789999999999999999999999776443346777888888888899999998776432 267888999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHH
Q 010376 141 GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSI 220 (512)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 220 (512)
|+.+.+..+...++....+.......++.+....- + +.+ .+...+..+++......+.++....++.
T Consensus 76 k~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l---~---------~tp-~~~~~l~~l~~~~~~~~~Gi~~i~r~~~ 142 (359)
T TIGR00912 76 KILGRLLSILFILYFFLIAAYLIRIFADFIKTYLL---P---------RTP-IIVIIILIIIVSIYIVRKGIEVLLRTAE 142 (359)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc---C---------CCC-HHHHHHHHHHHHHHHHHccHHHHHHHHH
Confidence 99999999988887777776666666776654331 0 111 1222222222222222345555555555
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHH-HHHHHHhccchhhHhHHhhcC
Q 010376 221 VAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQAL-GAIAFAYSFSIILLEIQDTIR 299 (512)
Q Consensus 221 ~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~faf~~~~~i~~i~~em~ 299 (512)
+-....+... ++..... ..+....++-.|-. ..+..+...+. +...++|.+...+....+++|
T Consensus 143 i~~~~~i~~~--~~il~~~-~~~~~~~~~l~P~~-------------~~g~~~~~~~~~~~~~~~f~g~~i~~~~~~~~~ 206 (359)
T TIGR00912 143 ILLIIFLILF--ILVLILL-APKLGNIKNLLPVL-------------ENGLSPILKGAYPVVTFAFGEIEIFFLLFPLLS 206 (359)
T ss_pred HHHHHHHHHH--HHHHHHH-hcccccHHHccCcc-------------ccCcHHHHhhhhHHhhhhhHHHHHHHHHHHHhC
Confidence 4444433221 0111111 11111111111111 11223445443 478899999999999999999
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 300 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 300 ~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
|| |+.+|+...+..+++++|+.+-......+|.+
T Consensus 207 ~~----~~~~k~~~~~~~~~~~ly~~~~~~~i~~lg~~ 240 (359)
T TIGR00912 207 KK----KKIKKSIIKAIIIGVLLYILTTFVSISVFGGN 240 (359)
T ss_pred Ch----hhhHHHHHHHHHHHHHHHHHHHHHHHheecHH
Confidence 98 88999999999999999999888888888854
No 43
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=99.46 E-value=1e-10 Score=120.94 Aligned_cols=291 Identities=16% Similarity=0.129 Sum_probs=170.7
Q ss_pred cHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCC
Q 010376 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVN-LYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG 141 (512)
Q Consensus 63 s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 141 (512)
|+++++...++.++|+|++..| ...+.|.. .++..++.+.+. ...+..+.|..++.+. .| ..|.. .++.+||
T Consensus 2 ~~~~~~~l~~~~~~g~gi~~~~-~~~~~G~~-~~~~~~i~~~~~~l~~a~~~~el~~~~p~-~G---G~y~~-~~~~~g~ 74 (426)
T PF13520_consen 2 GLFSAIALVIGSIIGSGIFFSP-AAASAGPS-AILAWIIAALLFFLPIALSYAELSSAYPS-AG---GIYVW-VSRAFGP 74 (426)
T ss_dssp -HHHHHHHHHHCHHTTTTTTHH-HHTCTGCH-HHHHHHHHHHHHHHHHHHHHHHHHTTTTS-ST---THHHH-HHHHH-H
T ss_pred CHHHHHHHHHHHHHHHHHHHHH-HHHHHhHH-HHHHHHHHHHHHHHHHHHHHHHHhccCCC-cC---eeeeh-hhhcccc
Confidence 6889999999999999999999 76677775 555555555555 6788888887665332 22 24544 4555999
Q ss_pred cceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHH--HHHHhhccCCCcchhhHHH
Q 010376 142 KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFG--IIEVLFSQIPDFDQVWWLS 219 (512)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~--~~~~pl~~~~~l~~l~~~s 219 (512)
+.+++..|...+.....+.++.....+.+...+.. +. ........++.. ++...+...+..+..++++
T Consensus 75 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~-----~~~~~~~~~i~~~~~~~~~~l~~~g~~~~~~~~ 144 (426)
T PF13520_consen 75 FWGFIVGWLYWVAYILSLASVASSFASYLLSLFGP-----DL-----NPSPWPQFLIAIILILLFTLLNLLGIKLSGKIQ 144 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTG-----GG-----TCSHHHHHHHHHHHHHHHHHHHHTTHHHHHHHH
T ss_pred cchhcccceeEEEeeccccccccchhhhhhhcccc-----cc-----ccccchheeeeecccccceEeeechhhhhhhhh
Confidence 99999999999988888888887788777665521 00 000111222222 2222222223455555555
Q ss_pred HHHHHHHH-HHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhc
Q 010376 220 IVAAIMSF-TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTI 298 (512)
Q Consensus 220 ~~~~~~~~-~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em 298 (512)
.+.....+ ..+++.+..++.....+.....+....+.. +..+...+.+++..+|+|.|.+..+.+.+|+
T Consensus 145 ~~~~~~~i~~~l~~~i~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~G~e~~~~~~~E~ 214 (426)
T PF13520_consen 145 NILTVIKIVIPLLVLIILGIVSFSFSGFNSLSFSLSTFF----------PSGWPGFLAGFSVAFFAFSGFEAIASLAEEN 214 (426)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHSTTCCHHH----SHSCSS----------CSSSSHHHHHHHHHGGGGTTTTHHHHGGGGS
T ss_pred hhhhhhhhhhhhhhheeEEEeeecccccccccccccccC----------CccccchhhHHHHHHhhcccccccccccccc
Confidence 55554444 222233333343332211100000000000 0111146788999999999999999999997
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCC---Ccccccccc----cCCChHHHHHHHHHHHHHHHHhhh
Q 010376 299 RSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA---PNNLLTGFG----FYNPYWLIDIANAAIVVHLVGAYQ 371 (512)
Q Consensus 299 ~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~---~~~il~~~~----~~~~~~~~~i~~~~~~i~~~~s~p 371 (512)
|| |+.+|++..+..++.++|.+....-....+++. .++....+. .....+...+..+...+....+..
T Consensus 215 k~-----k~ip~ai~~~~~~~~i~y~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 289 (426)
T PF13520_consen 215 KN-----KTIPRAIIISIIIVAIIYILFSIALLGALPDDELANSSNSPSPFAVLASAVGGSWLAIIVSIAAILSLFGSIN 289 (426)
T ss_dssp SS-----HHHHHHHHHHHHHHHHHHHHHHHHHHTTSTHCHHHTTTCHHCHHHHHHHHHHCCTHHHHHHHHHHHHHHHHHH
T ss_pred cc-----hhheeecccchhHHHHHHhhhhheeeecccchhhhcccccccccchhhccccccccccccccccccccccccc
Confidence 75 689999999999999999998777766666531 112110000 001124445555555555565555
Q ss_pred hhccchHHHHHHHh
Q 010376 372 VFCQPLFAFVEKWS 385 (512)
Q Consensus 372 l~~~p~~~~l~~~~ 385 (512)
.......+.+...-
T Consensus 290 ~~~~~~sR~l~~~a 303 (426)
T PF13520_consen 290 AFIFGASRLLYAMA 303 (426)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred hhhcchhhcccccc
Confidence 55555555555544
No 44
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=99.40 E-value=5.5e-10 Score=117.35 Aligned_cols=255 Identities=11% Similarity=0.042 Sum_probs=137.6
Q ss_pred CCcccccccHHHHHHHHHhhhhh--hhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 010376 55 DGRLKRTGNFWTTSSHIITAVIG--SGVLS-LAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTY 131 (512)
Q Consensus 55 ~~~~~~~~s~~~a~~~li~~~iG--~GiL~-lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y 131 (512)
+.+.+|+.+.++.+..-++ ++| +|+.. .+.+..+.|....+...++.+++....+..+.|...+.+. .| ..|
T Consensus 7 ~~~l~r~l~~~~~~~~~~~-~~~~~~g~~~~~~~~~~~~Gp~~~i~~~~i~gi~~l~~~~~~aEl~s~~P~-~G---g~y 81 (482)
T TIGR00907 7 KPELKREFSLWSIFGFAFS-ISNSWTGISTTYNYGLSSGGAMSIVWGWIIAGAGSICIALSLAELSSAYPT-SG---GQY 81 (482)
T ss_pred cceeecccchhHHHHHHHH-HHHHHHHHHHHHHHhhhcCCccchhHHHHHHHHHHHHHHHHHHHHHhhCCC-Cc---cHH
Confidence 3457788888888777777 444 66644 4556778887656778888999999999999997766443 33 245
Q ss_pred HHHHHH---hhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc
Q 010376 132 MDAVKA---NLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ 208 (512)
Q Consensus 132 ~~l~~~---~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 208 (512)
....+. .+|+...+++.|..++.....+.+.....++.+..+...... . .....+.....++..+++..+..
T Consensus 82 ~~~~~~~g~~~g~~~~f~~gW~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~--~---~~~~~~~~~~~~i~~~~~~~~~~ 156 (482)
T TIGR00907 82 FWSAKLAPPRQMPFASWMTGWFNLAGQVAGTASTDLSVAQLILGIVSLTTP--G---REYIPTRWHIFGIMIGIHLIHAL 156 (482)
T ss_pred HHHHHhcccccccceeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--C---CCccccCchhhhhHHHHHHHHHH
Confidence 444333 134666777888887777777666666666666654421100 0 00011111112222211221222
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCC--CCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhc
Q 010376 209 IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRS--FKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYS 286 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~ 286 (512)
+ |+...|..+.+..+..+.-++..+...+.....+.. .+.+....++.++ ........+....++....|+|.
T Consensus 157 i-n~~g~k~~~~~~~~~~~~~i~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~~----~~g~~~~g~~~~~~~~~~~fsf~ 231 (482)
T TIGR00907 157 I-NSLPTKWLPRITSSAAYWSLLGFLTICITLLACKSPKFNDGKFVFTNFNNS----TGGWKPGGFAFLLGLLNPAWSMT 231 (482)
T ss_pred H-HHhhHhHHHHHHHHHHHHHHHHHHHHhhhhhccCCCCCCChhhhheeeeCC----CCCcCCCchhhhhhhhhhHHHhc
Confidence 2 334444444444443321111111111111111110 0000000000000 00000111245566666789999
Q ss_pred cchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 010376 287 FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG 327 (512)
Q Consensus 287 ~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g 327 (512)
|.+......+|+|||+ |+++|++..+..+..++|.+..
T Consensus 232 G~e~~~~~a~E~knP~---r~iP~Ai~~s~~i~~~~~~~~~ 269 (482)
T TIGR00907 232 GYDGTAHMAEEIENPE---VVGPRAIIGAVAIGIVTGFCFN 269 (482)
T ss_pred CcchhhHHHHhcCChh---hhcCHHHHHHHHHHHHHHHHHH
Confidence 9999999999999997 8999999999887776554433
No 45
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=99.39 E-value=5.7e-09 Score=109.36 Aligned_cols=260 Identities=12% Similarity=-0.036 Sum_probs=145.8
Q ss_pred CCcccccccHHHHHHHHHhhh-hhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHH
Q 010376 55 DGRLKRTGNFWTTSSHIITAV-IGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYM 132 (512)
Q Consensus 55 ~~~~~~~~s~~~a~~~li~~~-iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~ 132 (512)
+.+.+|+.|.++.+..-++.+ +|+|+.+.+.. ..++|.. .+...++.++.....+..+.|...+.+. .| ..|.
T Consensus 8 ~~~L~R~~~~~~~~~~~~~~~~~~~gi~~~~~~~~~~~Gp~-~~~~~li~~i~~l~~als~aEL~s~~P~-aG---G~Y~ 82 (475)
T TIGR03428 8 QPQLHRKLGRYASFAAGFSFVSILTTIFQLFGFGYGFGGPA-FFWTWPVVFVGQLLVALNFAELAARYPI-SG---AIYQ 82 (475)
T ss_pred ccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHHhccCcH-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC---CHHH
Confidence 345788899999988888875 89999887666 6677773 5777778888888888888887766443 33 2455
Q ss_pred HHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcc-cccch-hhHHHHHHHHhhcc--
Q 010376 133 DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCH-MSSNG-YMITFGIIEVLFSQ-- 208 (512)
Q Consensus 133 ~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~-~~~i~~~~~~pl~~-- 208 (512)
.. ++.+||...++..|..++.....+.+........+..+.+..... . .+.... ....+ ..++..++++....
T Consensus 83 ~~-~~~~g~~~gf~~gW~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-~~~~~~~~~~~~~~~~~~~~~~~~~~~in 159 (475)
T TIGR03428 83 WS-RRMGGEVIGWFAGWFMIIAQIVTAAAAAIALQVVLPNIWSGFQII-G-EDPTLTSPSGAANAVLLGSVLLVLTTVIN 159 (475)
T ss_pred HH-HHHcCccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhc-c-cCccccCCCchHHHHHHHHHHHHHHHHHH
Confidence 44 445899999999999888776555554444444444332110000 0 000000 00111 11111111111111
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccc
Q 010376 209 IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFS 288 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~ 288 (512)
.+..+..++++.+..+..+..++++++........+. ...+.. .++. ...........+.....|+|.|.
T Consensus 160 ~~g~k~~~~i~~~~~~~~i~~l~~iii~~~~~~~~~~--~~~f~~-~~~~-------~~~~~~~~~~~~~~~~~~~f~G~ 229 (475)
T TIGR03428 160 CIGVEWMSRVNTIGVTCEIVGVLAVIGVLFTHAQRGP--GVVFDT-SVTG-------ASPGYYGAFLVSGLMAAYVMVGF 229 (475)
T ss_pred HhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc--ceeeec-CCCC-------CCccHHHHHHHHHHHHHHHhcCc
Confidence 2233444444433333333222222222222111100 000000 0000 00111234445666778999999
Q ss_pred hhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 289 IILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 289 ~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
+....+.+|+|||+ |+.||++..+..+.+++|.+.-+......+
T Consensus 230 e~~~~~aeE~knP~---r~iPrai~~s~~i~~~~~~~~~~~~~~~~~ 273 (475)
T TIGR03428 230 GSAGELSEETKNPR---RVAPRTILTALSVSALGGGLMILGALMAAP 273 (475)
T ss_pred chHHHHHHHhcCcc---hhhhHHHHHHHHHHHHHHHHHHHHHHHHCC
Confidence 99999999999998 899999999999888766655544444334
No 46
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=99.38 E-value=1.4e-09 Score=113.87 Aligned_cols=252 Identities=13% Similarity=0.148 Sum_probs=156.0
Q ss_pred CcccccccHHH-HHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWT-TSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~-a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.+++|+.+.++ .....++.++|.|++..|......+.. ..+..++.+++....+..+.|.....+. .| .+-+-
T Consensus 8 ~~~~~~l~~~~~~~~~~~~~~~~~gif~~~~~~~~~~~~-~~~~~li~~~~~~~~a~~~~el~~~~p~-~G----G~y~~ 81 (466)
T COG0531 8 SELKKKLGLFDLLTALGVGSMIGSGIFALPGSAAGLAPA-AILAWLIAGIIILFLALSYAELSSAIPS-AG----GAYAY 81 (466)
T ss_pred hhcCCCcchHHHHHHHHHHhhHhhhhHhhhhhHHHhchH-HHHHHHHHHHHHHHHHHHHHHHHhcCCC-CC----Ceeee
Confidence 34555666777 888888999999999999987766522 2333566666666667888887764332 33 22233
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccC--CCc
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI--PDF 212 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~--~~l 212 (512)
.++.+||+.+++..|...+.......+........+..+.+... ........+.++..+....+..+ +..
T Consensus 82 ~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~~~~~~~ln~~G~ 153 (466)
T COG0531 82 AKRALGPRLGFLAGWLYLLAYVIALAAIAIGAASYLSYLFPGPG--------LLSIGPLLIILIALALIALLTLLNLRGI 153 (466)
T ss_pred hhhhcCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcch--------hhcCCchHHHHHHHHHHHHHHHHHHhhH
Confidence 34449999899999999999988888888888887777664210 00001012222222222222222 334
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 010376 213 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 292 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~ 292 (512)
+...+...+..+..+...++....++.....+. . ....... . .......+..++....|+|.|.....
T Consensus 154 ~~~~~~~~~~~~~~i~~~i~~~i~~~~~~~~~~-~-~~~~~~~---------~-~~~~~~~~~~~~~~~~~~f~G~e~~~ 221 (466)
T COG0531 154 KASAKINSIITILKIIILLIFIILGLFAFGFSN-G-NLFAPFN---------P-GGGSFGGILAAILLAFFAFTGFEAIA 221 (466)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccc-c-ccCCCcc---------c-ccchHHHHHHHHHHHHHHhhcHHHHH
Confidence 444444444444433322232222233222211 0 0000000 0 11122367788999999999999999
Q ss_pred hHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCC
Q 010376 293 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 336 (512)
Q Consensus 293 ~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~ 336 (512)
+..+|+|||+ |+.+|++..++.+++++|++.........+.
T Consensus 222 ~~a~E~knp~---r~ip~aii~~~~~~~~~y~~~~~~~~~~~~~ 262 (466)
T COG0531 222 TLAEEVKNPK---RTIPRAIILSLLIVLILYILGALVIVGVLPA 262 (466)
T ss_pred HHHHHhcCcc---ccccHHHHHHHHHHHHHHHHHHHHHHhCccH
Confidence 9999999997 7899999999999999999988887777765
No 47
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=99.38 E-value=4.1e-11 Score=124.85 Aligned_cols=377 Identities=14% Similarity=0.005 Sum_probs=225.9
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhH-HHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLS-LAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~-lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.+.+|+.+.+.-.+.-+++++|+|++. ...+.++.|...-++..++.+..++.+...+.|...+.+...|. .++|.
T Consensus 26 ~~lkR~L~~rhl~miaiGg~IGtGl~V~sG~~l~~~gp~s~iisf~i~g~~~~~~~~~~~E~~~~~P~~aGs-~~~ya-- 102 (554)
T KOG1286|consen 26 TELKRCLKTRHLQMLAIGGTIGTGLFVGTGSALRNGGPPSLLISFIIAGIAALLSALCLGEFAVRFPVSAGS-FYTYA-- 102 (554)
T ss_pred chhhccCCcccEEEEEecceeccceEEeccHHHhccCChhHHHHHHHHHHHHHHHHHHHHHHheeccccccc-ceeee--
Confidence 578888999999999999999999954 57778999888778888899999999999999977664431121 23444
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhh-H-HHHHHHHhhccCCCc
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYM-I-TFGIIEVLFSQIPDF 212 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-~-i~~~~~~pl~~~~~l 212 (512)
...+|+..++++.|..++.....+.+.....+.+++.+.. ........+ ..+...|. . +..++++.+.-.+-.
T Consensus 103 -~~~i~e~~aF~~gWny~l~y~i~~a~e~~a~s~~~~~w~~--~~~~~~~~~--~~~~~~~~~~fla~~v~in~~gv~~~ 177 (554)
T KOG1286|consen 103 -YRFVGESLAFAIGWNYLLEYVIGLAAEARAWSSYLDYWTG--ASLIGILVD--TVNPGGWIPDFLAFILIINLFGVLAY 177 (554)
T ss_pred -eeeeCcHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhc--ccccccccc--CCCCCccHHHHHHHHHHHHHHHHhhc
Confidence 4449999999999999999999999999999999998761 000000000 11111222 2 222333333344444
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 010376 213 DQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 292 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~ 292 (512)
...+......-+.+++-+++..+.......+++. ++......|..+ ..-.+..+.++..++-+..|+|.|-..+-
T Consensus 178 ge~ef~~~~~kvl~~v~~~Il~iVi~~G~~~~d~-~~~ig~~y~~~~----g~F~p~gf~Gv~s~~~~~~fsf~G~e~va 252 (554)
T KOG1286|consen 178 GEVEFSLAFNKILTAVGFIILAIVIIAGGGPADV-KNWIGFRYWHDP----GAFFPFGFKGVLSGAATAFFSFIGFELVA 252 (554)
T ss_pred cceeehHHHHHHHHHHHHHHhheeeecCCCcCCc-CCCcCccccCCC----CCcCCCCcceeeHHHHHHHHHHhhHHHHH
Confidence 5555444444444432221111111111111110 011111111110 01112236688899999999999999999
Q ss_pred hHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC---CCcccccccccC---CChHHH---HHHHHHHH
Q 010376 293 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL---APNNLLTGFGFY---NPYWLI---DIANAAIV 363 (512)
Q Consensus 293 ~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~---~~~~il~~~~~~---~~~~~~---~i~~~~~~ 363 (512)
...+|.|||+ |..|+++..++..++++|.+..+.-=+.-.-+ ..++....-++. +..+.. .+.++..+
T Consensus 253 ~~a~E~kNP~---k~IP~ai~~s~~ri~~~Yi~~~~~l~l~vpy~~~~L~~~~~~~spF~iai~~~~~k~~~~ivna~iL 329 (554)
T KOG1286|consen 253 TTAEEAKNPR---KAIPKAIKQSLLRILLFYILSSIVLGLLVPYNDPRLDPGAALASPFVIAIGNAGAKYLPHIVNAGIL 329 (554)
T ss_pred HHHHhccCCc---ccccHHHHHHHHHHHHHHHHHHHHheEEeccCccccCCCCccccHHHHHHhccCccccchhhhHHHH
Confidence 9999999998 99999999999999999998776544433211 111111110100 111223 37888888
Q ss_pred HHHHHhhhhhccchHHHHHHHhhccCCCCcc--cccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhcc-----ch
Q 010376 364 VHLVGAYQVFCQPLFAFVEKWSAKKWPKSDL--VTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLP-----FF 436 (512)
Q Consensus 364 i~~~~s~pl~~~p~~~~l~~~~~~~~~~s~~--~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp-----~~ 436 (512)
+.++++---.+++.-+.+..+-..+.-.+-+ .+++ ..|+ .......+...+.++... .+
T Consensus 330 ~~~~s~~n~~~y~~sR~l~amA~~G~~Pk~f~~v~~~---g~P~-----------~a~~v~~~~~~l~~~~~~~~~~~~f 395 (554)
T KOG1286|consen 330 IGLLSSLNSSLYAGSRVLYALAKDGLAPKFFARVDRR---GVPL-----------VAVLVSGLFGALAALNFSLGAATVF 395 (554)
T ss_pred HHHHHHHHHHhHHhHHHHHHHHhcCCcchHHhhcCCC---CCch-----------hHHHHHHHHHHHHHHHhccccchHH
Confidence 8888888777788888887764332211111 1111 2231 222222233333343333 26
Q ss_pred HHHHHHhhhhhhhhhhhhhhhhhhhhhc
Q 010376 437 NDVVGILGAMGFWPLTVYFPIEMYKAQK 464 (512)
Q Consensus 437 ~~i~~l~Ga~~~~~l~fi~P~~~~l~~~ 464 (512)
+.++++.|- +..+++.+=++.|+..+
T Consensus 396 ~~L~~~~si--~tl~~w~~i~~~~i~~R 421 (554)
T KOG1286|consen 396 NWLVNLSSI--GTLFAWTLVALSHLRFR 421 (554)
T ss_pred HHHHHHHhH--HHHHHHHHHHHHHeeee
Confidence 888888763 45566666677777654
No 48
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=99.32 E-value=1.6e-08 Score=106.46 Aligned_cols=257 Identities=16% Similarity=0.037 Sum_probs=132.4
Q ss_pred ccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVN-LYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
++|+.|+++.+...+++++|.+ .+|.++++.|.. +++..++.+++. ...+..+.|.....+...| ..|....+
T Consensus 5 ~~~~l~~~~l~~~~~~~vig~~--~~~~~~~~~G~~-~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG---G~Y~w~~~ 78 (496)
T PRK15238 5 TKKKLSLIGLILMIFTSVFGFA--NSPRAFYLMGYS-AIPWYILSAILFFIPFALMMAEYGSAFKDEKG---GIYSWMNK 78 (496)
T ss_pred ccCeeeHHHHHHHHHHHHHhCC--chHHHHHHcChH-HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC---cHHHHHHH
Confidence 3567899999999999999976 568888888875 456666666554 4466778887665442122 35666555
Q ss_pred HhhCCcceeehHHHHHHHHHHHHHHHHHHHhh-hHHHhhhhcccccCCCCCCcccccc-hhhHHHHHHHHhh--ccCCCc
Q 010376 137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASV-SMMAIKRSNCFQKSGGKDPCHMSSN-GYMITFGIIEVLF--SQIPDF 212 (512)
Q Consensus 137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~-~l~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~pl--~~~~~l 212 (512)
. +||+.+++..|..+................ ....++.. +.....+ ....... ...++..+++..+ .-.|.+
T Consensus 79 ~-~G~~~gf~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~-~~~~~~~~~~~~~a~~~~~~~t~vn~~g~ 154 (496)
T PRK15238 79 S-VGPKFAFIGTFMWFASYIIWMVSTASKIWIPFSTFIFGK--DTTQTWH-FLGLNSTQVVGILAVIWMILVTFVASKGI 154 (496)
T ss_pred H-cCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCc--chhhhhh-hhcccchHHHHHHHHHHHHHHHHHHccch
Confidence 5 999999887765444333222111100000 00001110 0000000 0001111 1112222222122 223344
Q ss_pred chhhHHHHHHHHHHHHHHH-HHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhh
Q 010376 213 DQVWWLSIVAAIMSFTYST-AGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIIL 291 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~~~~~-iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i 291 (512)
+..++++.++.+..+...+ +++...+.....+...+.+....++.++ ..+......+...++....|+|.|.+.+
T Consensus 155 ~~~~~i~~~~~~~~~~~~~~~ii~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~f~G~e~~ 230 (496)
T PRK15238 155 NKIAKVTSIGGIAVMLLNIVLLLVSIIILILNGGHFAQPIGVSSFVTS----PNPAYQSPIAVLSFVVFAIFAYGGIEAV 230 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccHhhcccC----CCCccccchHHHHHHHHHHHHHHhHHHH
Confidence 4444444433333221111 1111111111112111111100011000 0000011135667788899999999999
Q ss_pred HhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhh
Q 010376 292 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGY 331 (512)
Q Consensus 292 ~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy 331 (512)
....+|+|||+ |+.+|++..+...+.++|++..++..
T Consensus 231 ~~~a~E~~~p~---~~~p~ai~~~~~~~~~~y~l~~~~~~ 267 (496)
T PRK15238 231 GGLVDKTENPE---KNFPKGIIIAAIVISIGYSLAIFLWG 267 (496)
T ss_pred HHHHHhccCCC---ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999997 89999999999999999998654443
No 49
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=99.24 E-value=2.4e-08 Score=104.71 Aligned_cols=246 Identities=14% Similarity=0.044 Sum_probs=119.5
Q ss_pred ccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHHHHHHhhC
Q 010376 62 GNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNL-YTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (512)
Q Consensus 62 ~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~-~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 140 (512)
.+.+.-++..+.+++ ++-.+|.+ ++.|.. .++..++.+++.. -.+....|.....+. .| ..|. ..++.+|
T Consensus 3 ~~~~~l~~~~~~~v~--~~~~~~~~-a~~G~~-~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G---G~y~-~~~~a~G 73 (474)
T TIGR03813 3 LTVVTLAIMNITAVV--SLRGLPAE-AEYGLS-AAFYYLFAAIFFLVPVSLVAAELATAWPE-KG---GVFR-WVGEAFG 73 (474)
T ss_pred ccHHHHHHHHHHHHH--HhhcchHH-HHhhHH-HHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC---Ccee-eHhhhcC
Confidence 444444444444444 44555655 678864 3445555554443 477777887665443 22 1343 3455599
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHH-HHHHHHhhccCCCcchhhHHH
Q 010376 141 GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMIT-FGIIEVLFSQIPDFDQVWWLS 219 (512)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~pl~~~~~l~~l~~~s 219 (512)
++.+++..|..++.......+-+...+..+....+.... ... .....+.... ..++.+.+..+ |+..++..+
T Consensus 74 ~~~gf~~gw~~w~~~~~~~p~~~~~~~~~~~~~~~~~~~-----~~~-~~~~~~~~~~~~l~~~~~~~~i-n~~gv~~~~ 146 (474)
T TIGR03813 74 ARWGFLAIFMLWAQVTIWFPTVLTFGAVSLAFIGPEATV-----DES-LAGNKLYVLVSVLFVYWLATFI-ALRGVAAFT 146 (474)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-----Ccc-cccccHHHHHHHHHHHHHHHHH-HhcChHHHH
Confidence 999999998887766332222112222222211110000 000 0011122222 22222222222 444444444
Q ss_pred HHHHHH----HHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHH
Q 010376 220 IVAAIM----SFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQ 295 (512)
Q Consensus 220 ~~~~~~----~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~ 295 (512)
.++.+. .+.-.++++..++.....+.....+ .++... .+...++.....+. .+.|+|.|.+.+....
T Consensus 147 ~i~~~~~~~~~ii~~~~~ii~~~~~~~~g~~~~~~---~~~~~~-----~p~~~~~~~~~~~~-~~~~af~G~e~~~~~a 217 (474)
T TIGR03813 147 KVAKWGGIVGTIIPAAILVILGISYLLTGGESQIP---LRWDDA-----FPDFTNFDNVVLAA-SIFLFYAGMEMNAVHV 217 (474)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCC---CCHHHh-----CCCccccccHHHHH-HHHHHHhchhHhHHHH
Confidence 443322 1111122222233222222111110 011000 00001112233222 4578999999999999
Q ss_pred hhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcC
Q 010376 296 DTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFG 335 (512)
Q Consensus 296 ~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg 335 (512)
+|+|||+ |+.+|++..+..++.++|++..+.-....+
T Consensus 218 ~E~knP~---r~iPrAi~~~~~~~~~~y~l~~~~~~~~~~ 254 (474)
T TIGR03813 218 KDVDNPD---KNYPIAILIAALGTVLIFVLGTLAIAFIIP 254 (474)
T ss_pred HhccCcc---cchhHHHHHHHHHHHHHHHHHHHHHHhccC
Confidence 9999997 899999999999999999886655444444
No 50
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=99.20 E-value=5.1e-08 Score=102.63 Aligned_cols=239 Identities=10% Similarity=0.015 Sum_probs=122.7
Q ss_pred cccccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHH--HHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 59 KRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVN--LYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~--~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
+|+.|.++-++..+.+++ ++..+| .+++.|+ +.+...+++.+. .-.+....|.....++..| ..|... +
T Consensus 3 ~~~l~~~~~~~~~~~~v~--~~~~~~-~~a~~G~--~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G---G~y~wv-~ 73 (507)
T TIGR00910 3 AKKLSLFGFFAITASMVL--AVYEYP-TFATSGF--HLVFFLLLGGILWFIPVALCAAEMATVDGWEEG---GIFAWV-S 73 (507)
T ss_pred CcEeeHHHHHHHHHHHHH--HHHhhH-HHHHhhH--HHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC---Ceeeeh-h
Confidence 455778777776666665 567788 5778885 445555555554 4467778887654321122 234433 4
Q ss_pred HhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhh
Q 010376 137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVW 216 (512)
Q Consensus 137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~ 216 (512)
+.+|++.+++..|..++.......+........+...... ..+. ...++..+..++++.+....|+...+
T Consensus 74 ~a~G~~~Gf~~~~~~W~~~~~~~~~~~~~~~~~~~y~~~~---------~~~~-~~~~~~~i~~l~i~~~~t~~n~~G~k 143 (507)
T TIGR00910 74 NTLGERFGFAAIFFGWFQIAIGFIPMIYFILGALSYILKF---------PALN-EDPIIKFIAALIIFWALAFSQFGGTK 143 (507)
T ss_pred hccCccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------chhc-cCcHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4499999998877777655432222221111112222110 0001 11122222222222222223455555
Q ss_pred HHHHHHHHHHH----HHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhH
Q 010376 217 WLSIVAAIMSF----TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILL 292 (512)
Q Consensus 217 ~~s~~~~~~~~----~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~ 292 (512)
..+.++.++.+ ...++++..++.....+++...+.+.-.+.+ .....+....+....|+|.|.+...
T Consensus 144 ~~~~i~~i~~~~~~~i~~~ili~l~~~~~~~g~~~~~~~~~~~~~p---------~~~~~~~~~~~~~~~faf~G~E~~a 214 (507)
T TIGR00910 144 RTAKIAKAGFFAGILIPAFILFALAAAYFHGGAPIAIEIDSHAFFP---------DFSKVGTLVVFVAFIGAYMGVEASA 214 (507)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCccccCCcHHhcCC---------CcccccHHHHHHHHHHHHhcHHHHH
Confidence 54444433221 1112222222222222221111100000000 0001123445556799999999999
Q ss_pred hHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHh
Q 010376 293 EIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC 328 (512)
Q Consensus 293 ~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~ 328 (512)
...+|+|||+ |+++|++..+..++.++|.+..+
T Consensus 215 ~~a~E~knP~---r~~PrAi~~~~i~~~~l~~l~~~ 247 (507)
T TIGR00910 215 SHINELENPG---RDYPLAMILLMIAAICLDAIGGF 247 (507)
T ss_pred HHHHHccCCc---ccccHHHHHHHHHHHHHHHHHHH
Confidence 9999999997 89999999999999999976444
No 51
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=99.06 E-value=1.3e-07 Score=93.73 Aligned_cols=236 Identities=16% Similarity=0.095 Sum_probs=158.3
Q ss_pred cccHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhC
Q 010376 61 TGNFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (512)
Q Consensus 61 ~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 140 (512)
|.|..|..+.++.+++|+|++.+|....+.+- -+.+..++.++.......++.+..++.+. .+..|..++.+|
T Consensus 1 kIS~~Q~~~l~~~~~~g~~~l~~p~~l~~~~~-d~Wi~~ll~~~~~l~~~~l~~~l~~~~p~------~~l~~~~~~~~G 73 (320)
T PF03845_consen 1 KISPRQLFFLLISSIIGTGILFLPAILAEQAG-DAWISVLLGGLIGLLLALLIYYLLKRFPG------KTLVEISEKLFG 73 (320)
T ss_pred CcCHHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CcHHHHHHHHHHHHHHHHHHHHHHHHCCC------CCHHHHHHHHhC
Confidence 35788999999999999999999999665431 34455555556666666666666554332 389999999999
Q ss_pred CcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHH
Q 010376 141 GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSI 220 (512)
Q Consensus 141 ~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~ 220 (512)
|+.+.++.....++.+......+...++.+....-. +.+ .+......+++......+.++.+...+.
T Consensus 74 k~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~~~lp------------~TP-~~~i~~~~ll~~~y~a~~G~e~i~R~~~ 140 (320)
T PF03845_consen 74 KWLGKIINLLYILYFLLISALVLREFSEFIKTYLLP------------ETP-IWVIILLFLLVAAYAARKGIEVIARVAE 140 (320)
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC------------cCC-HHHHHHHHHHHHHHHHhcCHHHHHHHHH
Confidence 999999999999999888888888888888875420 111 1222222222222333456666665444
Q ss_pred HHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhcCC
Q 010376 221 VAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTIRS 300 (512)
Q Consensus 221 ~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~ 300 (512)
+-....+...+++... ..++.++++-. +-...+..+...+.....+.|.+...+.-+...+|+
T Consensus 141 ~~~~~~~i~~~~i~~~----~~~~~~~~~l~-------------P~~~~g~~~i~~~~~~~~~~~~~~~~~l~~~p~~~~ 203 (320)
T PF03845_consen 141 ILFPIFLILLLLILLL----SIPNIDWDNLL-------------PVLESGIKPILKGSLVISFPFGGIEILLFLFPFVKD 203 (320)
T ss_pred HHHHHHHHHHHHHHHH----hcccCCHHHee-------------CcccCChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4333333222222111 11211111111 112234457777788888889888888889999999
Q ss_pred CchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 301 PPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 301 p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
| ++.+|....+..+++++|...-+.....||.+
T Consensus 204 ~----~~~~k~~~~~~~~~~~~~~~~~~~~i~vfG~~ 236 (320)
T PF03845_consen 204 K----KKLKKSLLIAILISGLFLLFIIFITIGVFGPE 236 (320)
T ss_pred c----hHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHH
Confidence 8 78899999999999999999888899999964
No 52
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=99.06 E-value=9.2e-10 Score=115.52 Aligned_cols=245 Identities=19% Similarity=0.163 Sum_probs=150.2
Q ss_pred HHhhhhhhhhh-HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceeehHH
Q 010376 71 IITAVIGSGVL-SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGL 149 (512)
Q Consensus 71 li~~~iG~GiL-~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 149 (512)
.+++++|+|++ ..+.+..++|....++..++.+++...++..+.|..++.+ ..| .+-...++.+|+..++...|
T Consensus 6 ~ig~~ig~g~f~~~g~~~~~~G~~~~~la~li~~i~~~~~~~~~~ems~~~p-~~G----g~y~y~~~~lg~~~Gf~~gw 80 (478)
T PF00324_consen 6 SIGGIIGTGLFLGSGFAIAAAGPGGAPLAYLIAGIIVLLVALSLAEMSRRFP-SAG----GFYAYASRGLGPALGFAAGW 80 (478)
T ss_pred eHHHHHHHHHHHHHHHHHHhcccccchhHhHHHHHHHHhhhhhhhhhhhhhc-ccc----chhhhhhhccCCcCCceeeH
Confidence 45778999984 5677889999876788899999999999999999887654 222 34445556699999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHh--hhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHHHHHHH
Q 010376 150 IQYLNLFGVAIGYTIAASVSMMAI--KRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSF 227 (512)
Q Consensus 150 ~~~~~~~g~~i~y~i~~~~~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 227 (512)
..++.............+..++.. .+.. .....+.. .+..+..+++..+.+. ..+........-.+..+
T Consensus 81 ~y~~~~~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~-~~~~i~~~~~~~l~~~-gv~~~~~~~~~~~~i~~ 151 (478)
T PF00324_consen 81 AYWLSYIAAIAAEATAAGSFLQFWGYFPGL-------PSTWVWGI-LIAIIFILLITLLNLF-GVRVSGKIEFILTIIKL 151 (478)
T ss_pred HHHHHHHHHHHhhhhhhhhhhccccccccc-------cccccccc-hhhhhhhhhhhhhhhh-hhhccchHHHHHHHHhh
Confidence 988888887777777777666654 2110 00000000 1122222222222222 23333332222222222
Q ss_pred HHHHHHHhhh-hhhhhcCCCCCC-----Ccc---ccccccccCCCcccchhhHHHHHHHHHHHHHHhccchhhHhHHhhc
Q 010376 228 TYSTAGLGLG-IGKVAGNRSFKG-----SLT---GISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSIILLEIQDTI 298 (512)
Q Consensus 228 ~~~~iii~~~-i~~~~~~~~~~~-----~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~~i~~i~~em 298 (512)
...+..+..+ +.....+++.+. +.. ...-+. +.+...++.+++.++....++|.|...+...-+|.
T Consensus 152 ~~li~~ii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~~~af~G~e~~a~~a~E~ 226 (478)
T PF00324_consen 152 IALIAFIIVGVIILFFGGGPSNGRYWGDPGSFANNFPPGF-----TDPSGGGFSGFFAALVFAFFAFVGFESIAILAEEA 226 (478)
T ss_pred hHhhhhhhhcccccccccCCCccccccccccccccccccc-----ccccccchhHHHHhhhhhhcccccccccccccccC
Confidence 1111222222 111111111111 000 000000 01112346688999999999999999999999999
Q ss_pred CCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 299 RSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 299 ~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
|||+ |++||++..++....++|++.....-...+.+
T Consensus 227 k~P~---k~IPra~~~~~~~~~v~y~~~~~~~~~~~~~~ 262 (478)
T PF00324_consen 227 KNPR---KTIPRATLLSVLRIGVFYVLTSYALTLAVPYD 262 (478)
T ss_pred CCch---hhhhhHhhhhhhhhhhhhhhhhhhcccccCcc
Confidence 9997 89999999999999999998877766666643
No 53
>KOG3832 consensus Predicted amino acid transporter [General function prediction only]
Probab=98.94 E-value=8.3e-09 Score=90.24 Aligned_cols=218 Identities=16% Similarity=0.269 Sum_probs=141.3
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhh---------cCC---------------
Q 010376 66 TTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYR---------SGD--------------- 121 (512)
Q Consensus 66 ~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~---------~~~--------------- 121 (512)
-....+.|-++|+|-|++|++|+.+||.+++.++.+.+.+++.+....+|+.. +.+
T Consensus 16 vgllymfnlivgtgalalpkafatagwllsi~ll~fl~fmsfmaatfviealaaanaqlhwkrle~~keeeddd~stasd 95 (319)
T KOG3832|consen 16 VGLLYMFNLIVGTGALALPKAFATAGWLLSITLLTFLAFMSFMAATFVIEALAAANAQLHWKRLEKKKEEEDDDESTASD 95 (319)
T ss_pred hhHhhhhhhhhccccccchHhHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhhhhhccccccccCC
Confidence 45677889999999999999999999999999999999999999999998620 000
Q ss_pred ---------------C-----CCC-------cccccHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 010376 122 ---------------P-----VTG-------QRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIK 174 (512)
Q Consensus 122 ---------------~-----~~~-------~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 174 (512)
+ +.| ....+.++++...|.|.+--+..++++++++|-...|....-....++.
T Consensus 96 ~dvli~d~yeraekrpilsvqrrgspnpfeisdkvemgemasmffnkvgln~fyf~iiiylfgdlaiyaaavpfs~m~it 175 (319)
T KOG3832|consen 96 DDVLIADGYERAEKRPILSVQRRGSPNPFEISDKVEMGEMASMFFNKVGLNFFYFAIIIYLFGDLAIYAAAVPFSAMNIT 175 (319)
T ss_pred CcEEEecCchhcccCCcceecccCCCCcceeehhhhHHHHHHHHHHhhhHHHHHHHHHHHHhhhhhhhhhcCchHhhhhh
Confidence 0 000 0124788899999999999999999999999999999887766665554
Q ss_pred hh-----ccccc----CCCCCCccc-------ccchhhHHHHH-HHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHhhh
Q 010376 175 RS-----NCFQK----SGGKDPCHM-------SSNGYMITFGI-IEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLG 237 (512)
Q Consensus 175 ~~-----~~~~~----~~~~~~~~~-------~~~~~~~i~~~-~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~ 237 (512)
-. .|-.. ..+.+.|.. .++++..++.+ +.+|+.+. ++++.+.+.++.....+......+..+
T Consensus 176 caa~g~dscgvead~~~~dtdrcwg~ilrrmdayr~flaiftlll~lpftf~-diqktk~iqiltslmrw~~~~~g~~l~ 254 (319)
T KOG3832|consen 176 CAAIGADSCGVEADPCHEDTDRCWGEILRRMDAYRFFLAIFTLLLCLPFTFA-DIQKTKHIQILTSLMRWAAFILGISLA 254 (319)
T ss_pred hhhcCCccccccCCcccccccccchHHHhhhHHHHHHHHHHHHHHcCceeEe-ccccchhHHHHHHHHHHHhccchhhhh
Confidence 11 11100 011122311 12334444443 34466655 677788887777777664333333322
Q ss_pred hhhhhcCCCCCCCccccccccccCCCcccchhh-HHHHHHHHHHHHHHhccchhhHhHHhhcCCC
Q 010376 238 IGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQK-LWRSLQALGAIAFAYSFSIILLEIQDTIRSP 301 (512)
Q Consensus 238 i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~faf~~~~~i~~i~~em~~p 301 (512)
-.+.-++. . + ..++.. +-++-..++..+|+|.+|...|.....++.+
T Consensus 255 tmqaeeda----a-~------------a~p~arc~cgfgkl~~~aly~~~a~cmapda~gagq~k 302 (319)
T KOG3832|consen 255 TMQAEEDA----A-A------------AHPPARCFCGFGKLFGCALYAFMAHCMAPDAIGAGQTK 302 (319)
T ss_pred hhhhcccc----c-c------------cCCccccccccccccchhhHHHHhhccCCCCCCCCeec
Confidence 21221110 0 0 011111 1233456788899999999999988777644
No 54
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=98.93 E-value=3e-07 Score=93.10 Aligned_cols=262 Identities=12% Similarity=0.076 Sum_probs=132.2
Q ss_pred CCcccccccHHH---HHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH
Q 010376 55 DGRLKRTGNFWT---TSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTY 131 (512)
Q Consensus 55 ~~~~~~~~s~~~---a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y 131 (512)
+.+.+|.-++++ ..|.+++..-|. .-++.+++..+|...-.-..++.+.+++..+.-+.|.....+. .|. -|
T Consensus 43 kqef~R~fs~~s~fg~sFs~~g~~~~i-~tsm~~gl~~gG~~~~vwgwlIa~~~~i~va~slaEl~Sa~Pt-sGg---Ly 117 (550)
T KOG1289|consen 43 KQELKREFSLFSIFGISFSLMGLLPGI-ATSMAYGLGSGGPPTLVWGWLIAGFFSICVALSLAELCSAMPT-SGG---LY 117 (550)
T ss_pred chhhhhhhhHHHHHHHHHHHhcchhhh-hhheeeccccCChHHHHHHHHHHHHHHHHHHhHHHHHHhhCCC-CCc---HH
Confidence 455677665443 334444433331 1446666666665544444667777788888888886665553 222 23
Q ss_pred HHHHHHhhCCcceee----hHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhc
Q 010376 132 MDAVKANLGGKKVIF----CGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFS 207 (512)
Q Consensus 132 ~~l~~~~~G~~~~~~----~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 207 (512)
--.+.. -||+.+.+ +.|...+-+.....+--.-.++.+.....-. ++....++.....+...+++..+
T Consensus 118 ~waa~l-ap~k~~~~~sw~~Gw~~~~g~~~~~aSi~~S~A~~i~~~v~l~-------np~y~~~~~~~~~v~~ai~~v~~ 189 (550)
T KOG1289|consen 118 FWAAVL-APPKYGPFASWVTGWLNYLGQATGVASITYSLAQLILGAVSLT-------NPNYEPTNYHQFGVFEAILFVHG 189 (550)
T ss_pred HHHHHh-cCcchhhHHHHHHHHHHHHHHHhhchhhhHHHHHHHHHHHhhc-------CCCCcccceEeehHHHHHHHHHH
Confidence 333333 24444444 4433333332222222222222222222110 11122222222233333222222
Q ss_pred cC--CCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccc-hhhHHHHHHHHHHHHHH
Q 010376 208 QI--PDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTG-TQKLWRSLQALGAIAFA 284 (512)
Q Consensus 208 ~~--~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~fa 284 (512)
++ ..-+.+++++.++....+..+++.++.......++.+++..-. -++.. ++.+. ....|.+..++-.-.+.
T Consensus 190 lln~~p~r~l~~I~~~~~~~~ll~~~i~~I~lla~~~~k~gFns~~~--iF~~f---~N~sgw~~~G~afil~f~~~~wt 264 (550)
T KOG1289|consen 190 LLNSLPTRVLARINSVSVYLNLLFLVILMITLLAASSKKTGFNSGSF--IFGKF---NNYSGWKNNGWAFILGFFNPAWT 264 (550)
T ss_pred HHhcCCcHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCCCCCCCCce--eeecc---cccCCCCcchHHHHHhhccceeE
Confidence 22 1235566666666665554333333222222222111211100 01110 01111 22455677778888899
Q ss_pred hccchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 285 YSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 285 f~~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
+.|-..-..+.+|.||++ ++.+|++..+..+..++=..+-+.-..+-+++
T Consensus 265 ~sGyDa~~H~aEE~~nAs---k~aPrgIi~s~~i~~i~gw~~~I~i~~~i~~D 314 (550)
T KOG1289|consen 265 MSGYDAAAHMAEETKNAS---KAAPRGIISSIAIGFILGWIIIIGIAYTIPDD 314 (550)
T ss_pred EeccCchHHHHHHhcchh---hhccHHHHHHHHHHHHHHHHHHHHHHHhccch
Confidence 999999999999999998 89999999999988887666666666666653
No 55
>PRK12488 acetate permease; Provisional
Probab=98.41 E-value=0.0026 Score=67.83 Aligned_cols=153 Identities=14% Similarity=0.137 Sum_probs=101.2
Q ss_pred ccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHH-HHHHHHHhhhcCCCCCCcccccHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLY-TANLLSQCYRSGDPVTGQRNYTYMDAV 135 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~-s~~~l~~~~~~~~~~~~~~~~~y~~l~ 135 (512)
-.|+.+++...+.+..+.++++. ++.|-...+.|+.. .. ..+...+.+. ...++.+-.++.. .+|..|..
T Consensus 65 aGR~l~~~~~~~si~at~~Sa~sflG~~G~~y~~G~~~-~~-~~~g~~~g~~~~~~~~a~~lr~~g------~~T~~d~l 136 (549)
T PRK12488 65 AGGGLTGMQNGLAIAGDMISAASFLGISAMMFMNGYDG-LL-YALGVLAGWPIILFLIAERLRNLG------KYTFADVV 136 (549)
T ss_pred eCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhChhH-HH-HHHHHHHHHHHHHHHHHHHHHHCC------CcchHHHH
Confidence 45677888888889988888665 78898877778642 21 1111222221 2233444444322 25888988
Q ss_pred HHhhC-CcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 136 KANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 136 ~~~~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
++-|| |+.+.+..+...+..+.....-+...+..++.+++ ++...-+++.+++....+..-.++.
T Consensus 137 ~~Rf~s~~~r~laai~~i~~~~~yl~~q~~g~g~il~~l~g--------------i~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T PRK12488 137 SYRLAQGPVRLTAAFGTLTVVLMYLVAQMVGAGKLIELLFG--------------ISYLYAVVIVGALMVLYVTFGGMLA 202 (549)
T ss_pred HHHcCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhccchhH
Confidence 87788 56788887777777777777778888888777762 2333344556666666667778999
Q ss_pred hhHHHHHHHHHHHHHHHH
Q 010376 215 VWWLSIVAAIMSFTYSTA 232 (512)
Q Consensus 215 l~~~s~~~~~~~~~~~~i 232 (512)
..++..++.+..+...++
T Consensus 203 v~~td~iQ~~im~~~~i~ 220 (549)
T PRK12488 203 TTWVQIIKAVLLLSGTSF 220 (549)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999998777644433
No 56
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=98.40 E-value=0.0007 Score=70.28 Aligned_cols=193 Identities=16% Similarity=0.147 Sum_probs=105.6
Q ss_pred ccHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc
Q 010376 129 YTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ 208 (512)
Q Consensus 129 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 208 (512)
.++.-+.|..||.+|..+..+...+...|=...-....++.+..+++.............+.......++...+.+++..
T Consensus 76 l~~~v~sR~~FG~~Gs~~~~~~~~i~~igW~av~~~~~g~al~~~l~~i~~~~~~~~~~~t~~~~~~~~i~~~l~~~~~~ 155 (442)
T TIGR00800 76 LPFPVLSRASFGIYGSLLPSLLRIVMAIGWYGVQAWVGGLCVALMLDSIFPGYLHLGNGMTTLELICFIIFWALVLVFLF 155 (442)
T ss_pred CCcchhhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHhcccccccCCcccHHHHHHHHHHHHHHHHHHH
Confidence 37888899999999999999999999988888888889888888776432210000000000111222333444444444
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHH-hcc
Q 010376 209 IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFA-YSF 287 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~ 287 (512)
....+-.+.....+....+..+.+.+ ....+....... ...+. +.+.....+.+..++...+-. -..
T Consensus 156 ~~g~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~g~~~~-~~~~~----------~~~~~~~~~~f~~~~~~~~g~~~s~ 223 (442)
T TIGR00800 156 FFGYKIRHLFEWLAVVPPFAAFGMLI-WALSKAHGKGPL-GELTG----------TLHGSTGAWAFLYALSLVIGSFATW 223 (442)
T ss_pred cCHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCcc-ccCCC----------CCCcchhHHHHHHHHHHHHHHHHHH
Confidence 44444444445444444332111111 111111100000 00000 011122334455554443322 234
Q ss_pred chhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhh----cCCC
Q 010376 288 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA----FGDL 337 (512)
Q Consensus 288 ~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~----fg~~ 337 (512)
-.+.+...+.+|++ ++-.+....++....+....+|+++... +|+.
T Consensus 224 ~~~~~DysRy~~~~----~~~~~~~~~~~~~~~~~~~~~g~~~a~~~~~~~g~~ 273 (442)
T TIGR00800 224 ATNAPDFTRFGKSK----KTAIWGQFLALPGGFTLTCFFGILGAAAAYAAYGEP 273 (442)
T ss_pred HcCchhhhhhcCCc----cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCc
Confidence 45789999999998 5556667778888888888888888776 7764
No 57
>PRK11375 allantoin permease; Provisional
Probab=98.39 E-value=0.0019 Score=67.62 Aligned_cols=194 Identities=10% Similarity=0.041 Sum_probs=101.4
Q ss_pred ccHHHHHHHhhCCcceeehHHHHH-HHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCC---Ccccccchhh--HHHHHH
Q 010376 129 YTYMDAVKANLGGKKVIFCGLIQY-LNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKD---PCHMSSNGYM--ITFGII 202 (512)
Q Consensus 129 ~~y~~l~~~~~G~~~~~~~~~~~~-~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~--~i~~~~ 202 (512)
.++.-+.|..||.+|..+..+... +..++=-..-....++.+..++....+.....++ ....+...++ +++.++
T Consensus 89 l~~~v~sR~sFG~~Gs~l~~~~rai~~~igW~~vqt~~~g~al~~~l~~i~~~~~~~~~~~~~~g~~~~~~i~~~i~~~l 168 (484)
T PRK11375 89 VPFAMILRASYGVRGALFPGLLRGGIAAIMWFGLQCYAGSLALLILIGKIWPGFLTLGGDFTLLGLSLPGLITFLIFWLV 168 (484)
T ss_pred CChhHhHHHHHccccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCCcHHHHHHHHHHHHH
Confidence 489999999999999888887774 4555555555566677776665443221110000 0111111122 233344
Q ss_pred HHhhccCCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHH
Q 010376 203 EVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIA 282 (512)
Q Consensus 203 ~~pl~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (512)
..++.+ ...+.++++..++....+...+......+... + .+.. .++.+. ++.+.....+.+..++...+
T Consensus 169 ~~~~~~-~g~~~i~~l~~i~~p~~~i~~~~~~~~~~~~~--g--~~~~---~~~~~~---~~~~~~~~~~~~~~~i~~vi 237 (484)
T PRK11375 169 NVGIGF-GGGKVLNKFTAILNPCIYIVFGGMAIWAISLV--G--IGPI---FDYIPS---GIQKAENSGFLFLVVINAVV 237 (484)
T ss_pred HHHHHH-cCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc--C--Cchh---hccCcc---cccCCcchHHHHHHHHHHHH
Confidence 444443 46788888877777776543333332323222 1 1100 000000 00111112234444444333
Q ss_pred HHhc-cchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHh----hhhcCCC
Q 010376 283 FAYS-FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG----YAAFGDL 337 (512)
Q Consensus 283 faf~-~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~g----y~~fg~~ 337 (512)
-++. .-.+.|...|..|++ |+-.+...+++.+...+...+|++. ...+|+.
T Consensus 238 g~~~~~~~~~~D~tRy~k~~----~~~~~~~~~g~~i~~~~~~~~g~~~~~~a~~~~g~~ 293 (484)
T PRK11375 238 AVWAAPAVSASDFTQNAHSF----RAQALGQTLGLVVAYILFAVASVCIIAGASIHYGAD 293 (484)
T ss_pred HHHHHHHccccchhcccCCh----hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 3444 345789999999988 6666666777777776665555544 4466654
No 58
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.35 E-value=0.0026 Score=66.87 Aligned_cols=153 Identities=14% Similarity=0.100 Sum_probs=93.1
Q ss_pred ccccccHHHHHHHHHhhhhhhh-hhHHHHHHHHhChhHHHHH---HHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTV---LILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~gii~---lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
-.|+.+++...+.+..+.+|++ .++.|....+.|+...... .....+...+-+..+.+-.++.+ ..|..|
T Consensus 39 agr~~~~~~~~~s~~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~e 112 (483)
T PRK09442 39 GNRSMGGFVLAMTLIATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN------AVTLND 112 (483)
T ss_pred eCCCccHHHHHHHHHHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccHHH
Confidence 4566678888888888777764 4777776666675311111 11111111122233333334322 259999
Q ss_pred HHHHhhCCcc-eeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCc
Q 010376 134 AVKANLGGKK-VIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 212 (512)
Q Consensus 134 l~~~~~G~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 212 (512)
..++-||++. +.+..+...+..+....+.+...+..++.+++ ++....+++..++++..+....+
T Consensus 113 ~l~~Ryg~~~~~~~~~i~~~~~~~~~~~~ql~~~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GGl 178 (483)
T PRK09442 113 MLRARYQSRLLVWLASLSLLVFFFAAMTAQFIGGARLLETATG--------------ISYETGLLIFGITVALYTAFGGF 178 (483)
T ss_pred HHHHHhCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhccH
Confidence 9998899754 55555555555566666667777777777662 23334445556666667778889
Q ss_pred chhhHHHHHHHHHHHHHH
Q 010376 213 DQVWWLSIVAAIMSFTYS 230 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~~~~ 230 (512)
+...++..++.+..+...
T Consensus 179 ~av~~TD~iQ~~i~~~~~ 196 (483)
T PRK09442 179 RAVVLTDALQGIVMLVGT 196 (483)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999987766443
No 59
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.30 E-value=0.0037 Score=65.59 Aligned_cols=156 Identities=13% Similarity=0.074 Sum_probs=98.7
Q ss_pred cccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHH--HHHHHH-HHHHHHHHHhhhcCCCCCCcccccHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLI--LFALVN-LYTANLLSQCYRSGDPVTGQRNYTYM 132 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~li--i~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~ 132 (512)
.-.|+.+++...+.+..+.+|++. ++.|-...+.|+........ ..+.++ ..-+..+.+..++.+ ..|..
T Consensus 37 ~agr~l~~~~~~~s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~~ 110 (471)
T TIGR02119 37 LGGRSMGGFVLAMTLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN------AITIN 110 (471)
T ss_pred EeCCcccHHHHHHHHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC------CccHH
Confidence 345677888899999988888766 66777776777632111110 111111 111222333334322 25999
Q ss_pred HHHHHhhCCcc-eeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCC
Q 010376 133 DAVKANLGGKK-VIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 211 (512)
Q Consensus 133 ~l~~~~~G~~~-~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 211 (512)
|..++-||++. +.+..+...+.+++...+-+...+..++.+++ ++....+++.+++.........
T Consensus 111 e~l~~Ryg~~~~~~~~~i~~i~~~~~~~~~ql~g~g~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 176 (471)
T TIGR02119 111 DVLKARYNNKFLVWLSSISLLVFFFSAMVAQFIGGARLIESLTG--------------LSYLTALFIFSSSVLIYTTFGG 176 (471)
T ss_pred HHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhh
Confidence 99999999654 66777777777777777777778888877763 2333344455555666667778
Q ss_pred cchhhHHHHHHHHHHHHHHHH
Q 010376 212 FDQVWWLSIVAAIMSFTYSTA 232 (512)
Q Consensus 212 l~~l~~~s~~~~~~~~~~~~i 232 (512)
++.+.++..++.+..+....+
T Consensus 177 ~~av~~td~iQ~~v~~~~~~~ 197 (471)
T TIGR02119 177 FRAVALTDAIQGIVMFTGTTI 197 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 999999999998777643333
No 60
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=98.27 E-value=0.00058 Score=65.36 Aligned_cols=102 Identities=17% Similarity=0.136 Sum_probs=78.8
Q ss_pred HHHHHHHhhhhhhhhhHHHHH---HHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCc
Q 010376 66 TTSSHIITAVIGSGVLSLAWA---IAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (512)
Q Consensus 66 ~a~~~li~~~iG~GiL~lP~a---f~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 142 (512)
+-.+-.+++++|+|.=+==.. |.+-|+. |....++.+++-..++..+.+..++.+. .+|+|.-++.+||+
T Consensus 7 ~~~f~~ig~~vGAGfAsGqEi~QFF~~~G~~-s~~gIivs~vlf~~~g~vim~ig~~f~a------~~y~~~~~~v~~~~ 79 (349)
T COG3949 7 RWAFAFIGTVVGAGFASGQEIMQFFGKYGVY-SILGIILSTVLFTLSGAVIMTIGKKFNA------TSYREILKYVSGPK 79 (349)
T ss_pred HHHHHHHHHhhcccccchHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHHHHHhcc------cchHHHHHHHhhHH
Confidence 345666789999997653333 3345665 5666677777777777777776655433 39999999999999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 010376 143 KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIK 174 (512)
Q Consensus 143 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 174 (512)
...+.|..+.+..+++++.-+...+..+++.+
T Consensus 80 ~~ki~d~~iif~lf~~~vVM~AGags~~~e~~ 111 (349)
T COG3949 80 FAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMF 111 (349)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccchhHHHHHh
Confidence 99999999999999999999999998887766
No 61
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.24 E-value=0.00012 Score=75.26 Aligned_cols=155 Identities=13% Similarity=0.206 Sum_probs=93.8
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 010376 59 KRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
.|+.+++...+.+..+.+|++ +++.|....+.|+.. ....+..+.........+.+-.++.+ ..|..|.-++
T Consensus 5 gr~~~~~~~~~s~~at~~s~~t~~G~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~~~~r~~~------~~T~~e~~~~ 77 (406)
T PF00474_consen 5 GRSLGWWVVAFSLVATWISAWTFIGFPGFAYSYGISG-LWYAIGYAIGFLLFALFFAPRLRRSG------AVTIPEYLEK 77 (406)
T ss_dssp -S---HHHHHHHHHHHHSSHHHHTHHHHHHHHT-GGG-GHHHHHHHHHHHHHHHHTHHHHHHTT--------SHHHHHHH
T ss_pred CCCCcHHHHHHHHHHHHHHHHHHHHHHHHhhcCCcce-eeeccccchhHHHHHHHHHHhhcccc------hhhhhhhhhh
Confidence 356778888888888888865 578888888888753 33334334444444555566555422 2589999999
Q ss_pred hhCCcc--eeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchh
Q 010376 138 NLGGKK--VIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQV 215 (512)
Q Consensus 138 ~~G~~~--~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 215 (512)
-||++. +.+..+...+..+......+...+..++.++. ++.....++..++.+.....-.++..
T Consensus 78 Ryg~~~~~~~~~~i~~i~~~~~~~~~q~~~~~~~~~~~~g--------------i~~~~~~~i~~~i~~iYt~~GGl~av 143 (406)
T PF00474_consen 78 RYGSKALLRILAAIIIIVFMIPYLAAQLVGGGALLSVLFG--------------IPYNTAILIVGVIVIIYTFFGGLRAV 143 (406)
T ss_dssp HT-HHH-HHHHHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----------------HHHHHHHHHHHHHHTTCTT-----
T ss_pred hcCCchhhhhhcccccchhhhhhhhccccccccchhhccc--------------hhhhHHHHHHHHHHHHhhhhhhHhhh
Confidence 999998 65555555666667777777788888877663 33344455666666667777789999
Q ss_pred hHHHHHHHHHHHHHHHHHH
Q 010376 216 WWLSIVAAIMSFTYSTAGL 234 (512)
Q Consensus 216 ~~~s~~~~~~~~~~~~iii 234 (512)
.++..++.+..+....++.
T Consensus 144 ~~td~iQ~~i~~~~~~~~~ 162 (406)
T PF00474_consen 144 AWTDFIQGVIMIIGAIVVL 162 (406)
T ss_dssp -SHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHhh
Confidence 9999988887764433333
No 62
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.16 E-value=0.0023 Score=65.79 Aligned_cols=148 Identities=15% Similarity=0.194 Sum_probs=99.4
Q ss_pred ccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHh
Q 010376 60 RTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (512)
Q Consensus 60 ~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 138 (512)
|+.+++...+.+..+.+|++. ++.|....+.|+. +....+...........+..+..++.+ ..|..|..+.-
T Consensus 3 r~~~~~~~~~s~~at~~s~~t~ig~~~~~y~~G~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~T~~e~l~~R 75 (407)
T TIGR00813 3 RSLGGWVVAASLFASYISASQFLGLPGAIYAYGFA-IGFYELGALVLLIILGWLFVPIFINNG------AYTMPEYLEKR 75 (407)
T ss_pred CCCCcHHHHHHHHHHHhhHHHHhcCcHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHcC------CCchhHHHHHH
Confidence 566778888888887777554 7788877777753 222222222333344455555554322 25899999888
Q ss_pred hCC-cceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhH
Q 010376 139 LGG-KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWW 217 (512)
Q Consensus 139 ~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 217 (512)
||+ ..+.+..+...+..+....+.+...+..++.+++ ++.....++.+++++.......++...+
T Consensus 76 yg~~~~~~~~~~~~i~~~~~~~~~q~~g~~~il~~~~g--------------i~~~~~~ii~~~i~~~Yt~~GG~~av~~ 141 (407)
T TIGR00813 76 FGKRILRGLSVLSLILYIFLYMSVDLFSGALLIELITG--------------LDLYLSLLLLGAITILYTVFGGLKAVVW 141 (407)
T ss_pred hCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------chHHHHHHHHHHHHHHHHHHcchHHHHH
Confidence 998 5666667777777888888888888888887763 2223344455555556666778999999
Q ss_pred HHHHHHHHHHH
Q 010376 218 LSIVAAIMSFT 228 (512)
Q Consensus 218 ~s~~~~~~~~~ 228 (512)
+..++.+.++.
T Consensus 142 Td~iQ~~i~~~ 152 (407)
T TIGR00813 142 TDTIQAVIMIL 152 (407)
T ss_pred HHHHHHHHHHH
Confidence 99999877654
No 63
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.15 E-value=0.016 Score=61.75 Aligned_cols=150 Identities=15% Similarity=0.156 Sum_probs=94.3
Q ss_pred ccccccHHHHHHHHHhhhhh-hhhhHHHHHHHHhChhHHHHHHHHHHHHHH-HHHHHHHHhhhcCCCCCCcccccHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIG-SGVLSLAWAIAQLGWVAGPTVLILFALVNL-YTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG-~GiL~lP~af~~~G~~~gii~lii~~~~~~-~s~~~l~~~~~~~~~~~~~~~~~y~~l~ 135 (512)
-.|+.+++...+.+..+.++ ...++.|-...+.|+- +.... +...+.+ ....++.+-.++. + .+|..|..
T Consensus 65 aGr~~~~~~~g~si~at~~SaasflG~~G~~y~~G~~-~~~~~-~g~~~~~~i~~~~~a~~lrr~----g--~~T~~d~l 136 (549)
T TIGR02711 65 AGGNITGFQNGLAIAGDYMSAASFLGISALVYTSGYD-GLIYS-LGFLVGWPIILFLIAERLRNL----G--RYTFADVA 136 (549)
T ss_pred eCCCccHHHHHHHHHHHHHHHHHHHHHHHHHHHhChH-HHHHH-HHHHHHHHHHHHHHHHHHHHc----C--CccHHHHH
Confidence 35666677777777777666 5568888877777864 22222 1122222 2233444444432 2 26999988
Q ss_pred HHhhCC-cceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 136 KANLGG-KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 136 ~~~~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
++-||. ..+.+..+...+..+......+...+..++.+++ ++...-.++..++...-+....++.
T Consensus 137 ~~Rf~s~~~r~l~ai~~i~~~~~yl~~ql~g~g~il~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGm~a 202 (549)
T TIGR02711 137 SYRLKQRPIRILSACGSLVVVALYLIAQMVGAGKLIELLFG--------------LNYHVAVVLVGILMVMYVLFGGMLA 202 (549)
T ss_pred HHHcCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhhHH
Confidence 877874 4566666666666666667777777777777663 2223334555556666666778999
Q ss_pred hhHHHHHHHHHHHHH
Q 010376 215 VWWLSIVAAIMSFTY 229 (512)
Q Consensus 215 l~~~s~~~~~~~~~~ 229 (512)
..++..++.+..+..
T Consensus 203 v~~td~iQ~~im~~g 217 (549)
T TIGR02711 203 TTWVQIIKAVLLLFG 217 (549)
T ss_pred HHHHHHHHHHHHHHH
Confidence 999999998776643
No 64
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=98.14 E-value=0.0047 Score=62.09 Aligned_cols=75 Identities=15% Similarity=0.161 Sum_probs=50.5
Q ss_pred HHHhhhhhhhhhHHHHHH-HHhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceee
Q 010376 70 HIITAVIGSGVLSLAWAI-AQLG--WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIF 146 (512)
Q Consensus 70 ~li~~~iG~GiL~lP~af-~~~G--~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 146 (512)
.+..-.+|+|.|-.|-.. +++| |..+.+..++.++..-..+.+ ... +.| .+|.++.++ +||+...+
T Consensus 3 ~lFamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllgl~----av~---~~g---G~~~~l~~~-~g~~f~~l 71 (378)
T TIGR00796 3 MLFALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLGLI----ALA---LVG---GGYDSLSAR-IGKVFGIL 71 (378)
T ss_pred HHHHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHHHh----eee---ecC---CCHHHHHHH-hChHHHHH
Confidence 455667899999998874 4555 455666666666655444433 211 122 389999999 89999999
Q ss_pred hHHHHHHHH
Q 010376 147 CGLIQYLNL 155 (512)
Q Consensus 147 ~~~~~~~~~ 155 (512)
..+.+.+..
T Consensus 72 f~~~~~l~i 80 (378)
T TIGR00796 72 FTVILYLTI 80 (378)
T ss_pred HHHHHHHHH
Confidence 888777654
No 65
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=98.13 E-value=0.0083 Score=61.00 Aligned_cols=176 Identities=15% Similarity=0.149 Sum_probs=105.9
Q ss_pred ccHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc
Q 010376 129 YTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ 208 (512)
Q Consensus 129 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 208 (512)
.++.-+.|..||++|..+..+...+...|=-..-....++.++.+.+..... .+...+.++..++..+.+.
T Consensus 58 l~~~v~sR~~FG~~Gs~~~~~l~~i~~igW~~v~~~~gg~~l~~~~~~~~~~---------~~~~~~~~i~~~l~~~~~~ 128 (386)
T TIGR02358 58 LSAMGSLKLSLGSKGSVLPSLLNLLQLVGWTAVMIIVGAKAASLLGGRLFGE---------ESPMLWILIVGILVTLWLL 128 (386)
T ss_pred cCHHHHHHHHHccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC---------CchHHHHHHHHHHHHHHHH
Confidence 4789999999999999999888888888888888888889888887532110 0112233344443444443
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHH-hcc
Q 010376 209 IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFA-YSF 287 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~fa-f~~ 287 (512)
. ..+.++++..++..+.....+........+. + ..... + . .. .. ....++....-. -..
T Consensus 129 ~-G~~~i~~~~~~~~~~~~i~~~~~~~~~~~~~---~-~~~~~---~--~------~~-~~---s~~~~~~~~~~~~~sw 188 (386)
T TIGR02358 129 S-GPLAFVWLNNWSVWLLLIATLWLLVVVFSKA---D-LSELW---N--R------AG-DM---SFAVAVELVIAMPLSW 188 (386)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc---c-hhhhc---C--C------CC-Cc---cHHHHHHHHHHHHHHH
Confidence 3 5677888877777766533322222222111 1 10000 0 0 00 01 122222221111 122
Q ss_pred chhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 288 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 288 ~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
....+...+..|+| |+.-.....+..+...+-.++|.+...+.++.
T Consensus 189 a~~~~DysRy~k~~----~~~~~~~~~G~~i~~~~~~~~G~~~~~a~~~~ 234 (386)
T TIGR02358 189 LPLIADYTRFARNP----RHVFLGTVLGYFIGSCWMYFLGLAVTLATGQT 234 (386)
T ss_pred HHHccchhhhcCCC----cceehHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 33478999998887 77778888889999999999999888777653
No 66
>PRK09395 actP acetate permease; Provisional
Probab=98.08 E-value=0.019 Score=61.45 Aligned_cols=151 Identities=12% Similarity=0.116 Sum_probs=95.3
Q ss_pred ccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
-.|+.+++...+.+..+.++++. ++.|-...+.|+.. ....+...+.......++.+-.++. + .+|+.|..+
T Consensus 67 agr~l~~~~~~~si~At~~Sa~tfiG~~g~~y~~G~~~-~~~~~~~~~g~~~~~~~~~~~~r~~----g--~~T~~d~l~ 139 (551)
T PRK09395 67 AGGGITGFQNGLAIAGDYMSAASFLGISALVFTSGYDG-LIYSIGFLVGWPIILFLIAERLRNL----G--KYTFADVAS 139 (551)
T ss_pred cCCCCcHHHHHHHHHHHHHHHHHHHHhhHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHhhC----C--CccHHHHHH
Confidence 45667778888888888887655 78888777778742 2211111111112223334433432 2 269999888
Q ss_pred HhhCC-cceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchh
Q 010376 137 ANLGG-KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQV 215 (512)
Q Consensus 137 ~~~G~-~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 215 (512)
.-||+ +.+.+..+...+..+....+-+...+..++.+++ ++....+++.+++.+.-+..-.++..
T Consensus 140 ~Rygs~~~r~l~av~~iv~~~~yl~~q~~g~g~il~~~~g--------------i~~~~~ili~~~i~~iYt~~GGm~av 205 (551)
T PRK09395 140 YRLKQGPIRTLSACGSLVVVALYLIAQMVGAGKLIQLLFG--------------LNYHVAVVLVGVLMMVYVLFGGMLAT 205 (551)
T ss_pred HHcCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHhhcchHHH
Confidence 88984 5777777766666666666667777777776652 23334445566666666677789999
Q ss_pred hHHHHHHHHHHHHH
Q 010376 216 WWLSIVAAIMSFTY 229 (512)
Q Consensus 216 ~~~s~~~~~~~~~~ 229 (512)
.++..++.+..+..
T Consensus 206 ~~TD~iQ~iim~~g 219 (551)
T PRK09395 206 TWVQIIKAVLLLSG 219 (551)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999988776643
No 67
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.08 E-value=0.012 Score=61.84 Aligned_cols=153 Identities=14% Similarity=0.073 Sum_probs=99.8
Q ss_pred cccccHHHHHHHHHhhhhh-hhhhHHHHHHHHhChhHHHHHHH---HHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 59 KRTGNFWTTSSHIITAVIG-SGVLSLAWAIAQLGWVAGPTVLI---LFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG-~GiL~lP~af~~~G~~~gii~li---i~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.|+.+.+-..+...-+.++ .-.+++|....+.|+........ ...+...+-...+.+..++ .+ ..|..|.
T Consensus 37 gR~lg~~v~~ls~~as~~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~----~~--~~T~~d~ 110 (493)
T COG0591 37 GRSLGPFVYALSAAASDTSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKA----RG--ATTIPDF 110 (493)
T ss_pred CCcCChHHHHHHHHHHHHHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc----cC--CccHHHH
Confidence 3444455566666666666 77799999988888753222222 2222333333333333321 12 2599999
Q ss_pred HHHhhC-CcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcc
Q 010376 135 VKANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD 213 (512)
Q Consensus 135 ~~~~~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 213 (512)
-++-|| ++.+.+..+...+..+..+..-+...+..++..+. .+...-.++.++++..-...-.++
T Consensus 111 l~~Rf~s~~lr~l~ali~iv~~i~yia~ql~~~~~~~~~~~g--------------i~~~~~~~~~~~~v~~Yt~~gG~~ 176 (493)
T COG0591 111 LEARFGSKILRILSALIIIVFFIPYIALQLVAGGLLLSLLFG--------------ISYVTGILIGALIVALYTFLGGLR 176 (493)
T ss_pred HHHHcCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcC--------------CCHHHHHHHHHHHHHHHHHHcChh
Confidence 999999 89999999999999999999999999998866552 122233344455555555667889
Q ss_pred hhhHHHHHHHHHHHHHHH
Q 010376 214 QVWWLSIVAAIMSFTYST 231 (512)
Q Consensus 214 ~l~~~s~~~~~~~~~~~~ 231 (512)
++.++..++.........
T Consensus 177 av~~Td~iqg~im~i~~~ 194 (493)
T COG0591 177 AVVWTDFIQGLIMLIALI 194 (493)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999998888877764433
No 68
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=97.87 E-value=0.059 Score=57.67 Aligned_cols=151 Identities=15% Similarity=0.093 Sum_probs=95.6
Q ss_pred cccccccHHHHHHHHHhhhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAV 135 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~ 135 (512)
.-.|+.+++...+.+..+.++++ .++.|-...+.|+.. ....+.........+.++.+-.++.+. .|-.|.-
T Consensus 29 laGr~l~~~~~~~s~~At~~Sa~tflG~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~p~~rr~~~------~T~~e~l 101 (552)
T TIGR03648 29 VAGRGVPPVANGMATAADWMSAASFISMAGLIAFLGYDG-LAYLMGWTGGYVLLALLLAPYLRKFGK------YTVPDFI 101 (552)
T ss_pred eeCCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhChHH-HHHHHHHHHHHHHHHHHHHHHHHHCCC------ccHHHHH
Confidence 34567788888888888888755 478887766677632 211111111122234555555554332 4777766
Q ss_pred HHhhCCc-ceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcch
Q 010376 136 KANLGGK-KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQ 214 (512)
Q Consensus 136 ~~~~G~~-~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~ 214 (512)
++-||++ .+.+..+...+..+......+...+..++.++. ++...-+++.+++...-+..-.++.
T Consensus 102 ~~Rf~s~~~~~~~~i~~~~~~~~~l~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~i~~iYt~~GG~~a 167 (552)
T TIGR03648 102 GDRYYSNTARLVAVICAIFISFTYVAGQMRGVGVVFSRFLE--------------VDFETGVFIGMAIVFFYAVLGGMKG 167 (552)
T ss_pred HHHhCCCceehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHC--------------CCHHHHHHHHHHHHHHHHHhhhHHH
Confidence 6668855 566666666666677677777777777777663 2333444555566666666778999
Q ss_pred hhHHHHHHHHHHHH
Q 010376 215 VWWLSIVAAIMSFT 228 (512)
Q Consensus 215 l~~~s~~~~~~~~~ 228 (512)
+.++-.++.+..+.
T Consensus 168 V~~TD~iQ~iim~i 181 (552)
T TIGR03648 168 VTWTQVAQYIVLIV 181 (552)
T ss_pred HHHHHHHHHHHHHH
Confidence 99999999776653
No 69
>PRK11017 codB cytosine permease; Provisional
Probab=97.82 E-value=0.048 Score=55.84 Aligned_cols=173 Identities=14% Similarity=0.115 Sum_probs=90.4
Q ss_pred ccHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc
Q 010376 129 YTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ 208 (512)
Q Consensus 129 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 208 (512)
.++.-+.|..||.+|..+..+...+...+=...-....+..+....+ .+...+.++..++..+...
T Consensus 71 ~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~~~~l~~~~~--------------~~~~~~~~i~~~l~~~~~~ 136 (404)
T PRK11017 71 LSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMFAIPVVKATG--------------LDINLLIVLSGLLMTVTAY 136 (404)
T ss_pred cCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHH
Confidence 48999999999999999887777666655444444445555544331 1111234444444444444
Q ss_pred CCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHh-cc
Q 010376 209 IPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAY-SF 287 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf-~~ 287 (512)
. ..+.++++..++........+......+. +.++.+ +.. +.. +... .....++...+-.+ ..
T Consensus 137 ~-G~~~i~~~~~~~~p~~~~~~~~~~~~~~~---~~~g~~-~~~--~~~-------~~~~---~~~~~a~~~~~g~~~~~ 199 (404)
T PRK11017 137 F-GISALTILSRIAVPAIALLGGYSVWLAVN---DVGGLD-GLK--AIV-------PAEP---LDFSAALTLVVGSFISG 199 (404)
T ss_pred H-HHHHHHHHHHHHHHHHHHHHHHHHHHHHh---ccCchh-hhh--cCC-------CCCc---ccHHHHHHHHHHHHHHh
Confidence 3 34555655555554444222222211111 111111 000 000 0001 13333333322222 33
Q ss_pred chhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCC
Q 010376 288 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 336 (512)
Q Consensus 288 ~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~ 336 (512)
-.+.+...+..|++ |+-......++.+...+-.++|.......|+
T Consensus 200 ~~~~~DysRy~k~~----~~~~~~~~lg~~i~~~~~~~~G~~~a~~~~~ 244 (404)
T PRK11017 200 GTLTADFVRFGRSA----KIAVLATMVAFFLGNSLMFIFGAAGAAVYGQ 244 (404)
T ss_pred HhcCCChHhhccCc----cceeehhHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 56788999998877 5544566677777777777778777777665
No 70
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=97.80 E-value=0.04 Score=58.23 Aligned_cols=156 Identities=15% Similarity=0.061 Sum_probs=88.0
Q ss_pred cccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHH-HHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 57 RLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVN-LYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 57 ~~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~-~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
--.|+.+++...+.+..+.+++.. ++.|....+.|+.. . ...+...+. .....++..-.+... ....+..|..|.
T Consensus 37 lagr~l~~~~~~~s~~At~~Sa~t~iG~~g~~y~~G~~~-~-~~~~~~~~~~~l~~~~~~~~l~~~~-~~~~~~~T~~e~ 113 (502)
T PRK15419 37 LGGRSLGPFVTALSAGASDMSGWLLMGLPGAVFLSGISE-S-WIAIGLTLGAWINWKLVAGRLRVHT-EYNNNALTLPDY 113 (502)
T ss_pred eeCCCccHHHHHHHHHHHHHHHHHHHHhhHHHHHcCHHH-H-HHHHHHHHHHHHHHHHHHHHHHHHH-HHhcCceeHHHH
Confidence 345677788888888888887666 67888877788642 1 111111111 111222221111000 001112578888
Q ss_pred HHHhhCCcceeeh---HHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCC
Q 010376 135 VKANLGGKKVIFC---GLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 211 (512)
Q Consensus 135 ~~~~~G~~~~~~~---~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 211 (512)
.++-||++.+.+. .+...+.....+.+-+...+..++.+++ ++.....++.+++.+.-+..-.
T Consensus 114 l~~Ry~~~~~~~~~~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--------------i~~~~~iii~~~iv~iYt~~GG 179 (502)
T PRK15419 114 FTGRFEDKSRILRIISALVILLFFTIYCASGIVAGARLFESTFG--------------MSYETALWAGAAATILYTFIGG 179 (502)
T ss_pred HHHHhCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------CCHHHHHHHHHHHHHHHHHhhh
Confidence 8877997654443 3333333344444445556666666552 2333445556666666777888
Q ss_pred cchhhHHHHHHHHHHHHH
Q 010376 212 FDQVWWLSIVAAIMSFTY 229 (512)
Q Consensus 212 l~~l~~~s~~~~~~~~~~ 229 (512)
++...++..++.+.++..
T Consensus 180 l~aV~~TD~iQ~~imi~g 197 (502)
T PRK15419 180 FLAVSWTDTVQASLMIFA 197 (502)
T ss_pred HHHHHHHHHHHHHHHHHH
Confidence 999999999998776643
No 71
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=97.74 E-value=0.039 Score=56.16 Aligned_cols=174 Identities=16% Similarity=0.150 Sum_probs=100.6
Q ss_pred HHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCC
Q 010376 132 MDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPD 211 (512)
Q Consensus 132 ~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~ 211 (512)
-.++|..||.++.++..+...+.+.|=...-.+..++..... . ..+..++.++.+++....+.. .
T Consensus 84 mi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~------------~--~~~~~~~ili~g~l~~l~~if-G 148 (442)
T COG1457 84 MILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSG------------T--GLPVWAGILIIGVLMTLVTIF-G 148 (442)
T ss_pred heeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccC------------C--CCcHHHHHHHHHHHHHHHHHH-h
Confidence 346677799999999999999999998888888888762211 1 233445556666555555554 4
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhc-cchh
Q 010376 212 FDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYS-FSII 290 (512)
Q Consensus 212 l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~-~~~~ 290 (512)
.+.+...+..++...+..+...+. ........... .+ ...+.+..++..+++...-.+. .-+.
T Consensus 149 ~r~l~~l~~~a~~~~~~lf~~l~~----~~~~~~~~~~~----~~--------~~~~~~~~~fl~a~slv~g~~~sw~~~ 212 (442)
T COG1457 149 YRALHKLERIAVPLLLLLFLYLLA----LLFRSKGGLDA----LW--------VKGPTSPLSFLSALSLVIGSFASWGPY 212 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH----HHHhcccccce----ee--------ccCCCcchhHHHHHHHHHHHHHhhhhh
Confidence 566666666666665532222222 22221111000 00 0111122234444433332233 3445
Q ss_pred hHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCC
Q 010376 291 LLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLA 338 (512)
Q Consensus 291 i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~ 338 (512)
.....+.+|+|+. ++.-.....+....+.+-.+.|.....+-|+..
T Consensus 213 ~aDysRy~~~~t~--~~~~~~~~~G~~l~~~~~~ilGa~~a~a~g~~~ 258 (442)
T COG1457 213 AADYSRYAPSPTP--SKAFLAAVLGFFLGTSFMMILGAALAAAAGNAD 258 (442)
T ss_pred hhhhhhhcCCCch--HHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCc
Confidence 6888888998832 255555666677777777788888888888754
No 72
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=97.70 E-value=0.099 Score=55.04 Aligned_cols=157 Identities=13% Similarity=0.074 Sum_probs=87.5
Q ss_pred ccccccHHHHHHHHHhhhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
-.|+.+++...+.+..+.+++. .++.|-...+.|+.. ........+........+.+-.++..+ .+.+..|..|..+
T Consensus 34 agr~~~~~~~~~s~~At~~s~~~~~G~~g~~y~~G~~~-~~~~~g~~~~~~~~~~~~~~~~r~~~~-~~~~~~T~~e~l~ 111 (487)
T TIGR02121 34 GGRSLGPFVTALSAGASDMSGWLLMGLPGALYVTGLSE-LWIAIGLTIGAYINWKFVAPRLRVYTE-AAHNSITLPDFFE 111 (487)
T ss_pred eCCcccHHHHHHHHHHHHHhHHHHHhhHHHHHHhhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHhH-hhcCCccHHHHHH
Confidence 3566778888888877777755 466887766678642 211111112222233334333232110 0112358888888
Q ss_pred HhhCCcceeehH---HHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcc
Q 010376 137 ANLGGKKVIFCG---LIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFD 213 (512)
Q Consensus 137 ~~~G~~~~~~~~---~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~ 213 (512)
+-||++.+.+.. +...+........-+...+..++.+++ .+.....++..++...-+....++
T Consensus 112 ~Ryg~~~~~~~~~~ai~~~~~~~~~~~~~l~~~~~~l~~~~g--------------i~~~~~iii~~~i~~~Yt~~GGl~ 177 (487)
T TIGR02121 112 NRFNDKSRLLRIISALIILVFFTIYTSSGLVAGGKLFESTFG--------------LDYKTGLLIGALIIVIYTFFGGFL 177 (487)
T ss_pred HHhCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--------------ccHHHHHHHHHHHHHHHHHhhhHH
Confidence 889976555433 223333333444555556666666552 222334455556666666677899
Q ss_pred hhhHHHHHHHHHHHHHH
Q 010376 214 QVWWLSIVAAIMSFTYS 230 (512)
Q Consensus 214 ~l~~~s~~~~~~~~~~~ 230 (512)
...++..++.+..+...
T Consensus 178 av~~TD~iQ~~i~~~~~ 194 (487)
T TIGR02121 178 AVSWTDFVQGLLMFFAL 194 (487)
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 99999999987766433
No 73
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=97.54 E-value=0.13 Score=52.24 Aligned_cols=136 Identities=11% Similarity=0.076 Sum_probs=80.8
Q ss_pred ccccHHHHHHHHHhhhhhhhhhHHHHH-HHHhChhHHHHHHHHHHHHHHHHHHHH-HHhhhcCCCCCCcccccHHHHHHH
Q 010376 60 RTGNFWTTSSHIITAVIGSGVLSLAWA-IAQLGWVAGPTVLILFALVNLYTANLL-SQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 60 ~~~s~~~a~~~li~~~iG~GiL~lP~a-f~~~G~~~gii~lii~~~~~~~s~~~l-~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
+.....+..+....+-+|.|=++---. =++-|+-+ +..++...+..+-...+ +|. .-.+| .+..|..++
T Consensus 15 ~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~l--l~vills~l~~~~~Q~~~arL----givTG---~~laq~ir~ 85 (416)
T COG1914 15 KLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSL--LWVILLSNLMAYILQELSARL----GIVTG---KGLAEAIRE 85 (416)
T ss_pred HHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHH--HHHHHHHHHHHHHHHHHHHHH----HHHhC---CcHHHHHHH
Confidence 334455666667777777666554333 34556533 22222222222211111 111 11223 278888888
Q ss_pred hhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhH
Q 010376 138 NLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWW 217 (512)
Q Consensus 138 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~ 217 (512)
.++|+..++..+...+....++++-.+..+-.++-++. .+..+-.+++++..+.+...++.+.+..
T Consensus 86 ~y~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--------------ip~~~g~iItav~~~iil~~~~~r~~E~ 151 (416)
T COG1914 86 RYLPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG--------------IPLIIGAVITAVDVLIILLLKGYRLLER 151 (416)
T ss_pred HccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--------------ChHHHHHHHHHHHHHHHHHhcchHHHHH
Confidence 89999999999999999999999999999988887762 3334445555555554444544555554
Q ss_pred H
Q 010376 218 L 218 (512)
Q Consensus 218 ~ 218 (512)
+
T Consensus 152 ~ 152 (416)
T COG1914 152 V 152 (416)
T ss_pred H
Confidence 4
No 74
>KOG2082 consensus K+/Cl- cotransporter KCC1 and related transporters [Inorganic ion transport and metabolism]
Probab=97.49 E-value=0.037 Score=58.49 Aligned_cols=111 Identities=21% Similarity=0.255 Sum_probs=72.9
Q ss_pred cccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhh
Q 010376 61 TGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANL 139 (512)
Q Consensus 61 ~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~ 139 (512)
-++..+-..=.+-.+.|.=+ +-+-|..-.+|...+.++.++++..+..|+.-+...+..-- + . ...+|--+.+. +
T Consensus 114 mGt~mGVyLPclQnIlGVilFiRLtWvVG~AGv~q~fllv~iCC~cTmLTaISmSAIATNGV-V-p-aGGsYfmISRs-L 189 (1075)
T KOG2082|consen 114 MGTLMGVYLPCLQNILGVILFIRLTWVVGMAGVGQGFLLVFICCLCTMLTAISMSAIATNGV-V-P-AGGSYFMISRS-L 189 (1075)
T ss_pred cceeeeeeHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-c-c-CCCeeEEEecc-c
Confidence 34444444444555666433 45677788889888888888888888888777666543211 1 1 12377777766 7
Q ss_pred CCcceeehHHHHHHHHHHHHHHHHHHHhhhHHH-hhh
Q 010376 140 GGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMA-IKR 175 (512)
Q Consensus 140 G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~-~~~ 175 (512)
|+-.+-.+.++..+-.-.+...|++..-+.+-. +++
T Consensus 190 GPEFGgAVGlcFYLgtT~AaaMYIlGaVEi~L~Yi~P 226 (1075)
T KOG2082|consen 190 GPEFGGAVGLCFYLGTTVAAAMYILGAVEIFLTYIFP 226 (1075)
T ss_pred CccccceeeehhhhhhHHHHHHHHHhHHHHHHHHHcc
Confidence 887777777777777777777788777766654 443
No 75
>PRK00701 manganese transport protein MntH; Reviewed
Probab=97.24 E-value=0.33 Score=50.20 Aligned_cols=45 Identities=13% Similarity=0.167 Sum_probs=35.0
Q ss_pred cHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 010376 130 TYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIK 174 (512)
Q Consensus 130 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 174 (512)
+..++.++-+||+..++..+...+.+.++.++-++..+..++.++
T Consensus 95 ~l~~~ir~~~~~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~ 139 (439)
T PRK00701 95 DLAQACRDRYPRPVVWFLWIQAELAIMATDLAEVIGAAIALKLLF 139 (439)
T ss_pred CHHHHHHHHCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 799999999999988877777777777777777777776666554
No 76
>PRK10484 putative transporter; Provisional
Probab=97.13 E-value=0.5 Score=50.27 Aligned_cols=160 Identities=9% Similarity=0.029 Sum_probs=83.2
Q ss_pred CcccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA 134 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l 134 (512)
.--.|+.+++-..+.+..+.++++. ++.|-...+.|+.. .......+......+..+..-.++. + ..|..|.
T Consensus 34 flagR~l~~~~~~~sl~AT~~Sa~tflG~~g~~y~~G~~~-~~~~~~~~~~~~~~~~~~~p~~~r~----~--~~T~~e~ 106 (523)
T PRK10484 34 FLAGRSLTGPVIAGSLLLTNLSTEQLVGLNGQAYASGMSV-MAWEVTAAIALIILALIFLPRYLKS----G--ITTIPDF 106 (523)
T ss_pred eecCCCCchHHHHHHHHHHHhhHHHHhcchHHHHHhCHHH-HHHHHHHHHHHHHHHHHHHHHHHhc----C--CccHHHH
Confidence 3345677788888888877777655 77887766677542 1111111111122333334333332 1 2588888
Q ss_pred HHHhhCCcceeehHHHHHHHHHHHHH-HHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhH----HHHHHHHhhccC
Q 010376 135 VKANLGGKKVIFCGLIQYLNLFGVAI-GYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMI----TFGIIEVLFSQI 209 (512)
Q Consensus 135 ~~~~~G~~~~~~~~~~~~~~~~g~~i-~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~----i~~~~~~pl~~~ 209 (512)
.++-||++.+.+......+......+ ..+...+..+..++... .....+...... +.+++...-+..
T Consensus 107 l~~Ryg~~~~~~~~~~~~i~~~~~~~~~~l~~g~~~l~~i~~~~--------~~~gi~~~~~~~~~~~~~~~i~~~Yt~~ 178 (523)
T PRK10484 107 LEERYDKTTRRIVSILFLIGYVVSFLPIVLYSGALALNSLFHVS--------ELLGISYGAAIWLLVWLIGIIGAIYAVF 178 (523)
T ss_pred HHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcch--------hhcCCcHHHHHHHHHHHHHHHHhhhhhh
Confidence 88889998776655544433322222 22222333333332100 000122222121 123334455566
Q ss_pred CCcchhhHHHHHHHHHHHHHH
Q 010376 210 PDFDQVWWLSIVAAIMSFTYS 230 (512)
Q Consensus 210 ~~l~~l~~~s~~~~~~~~~~~ 230 (512)
-.++.+.++-.++.+..+...
T Consensus 179 GGl~aV~~TD~iQ~vim~i~~ 199 (523)
T PRK10484 179 GGLKAVAVSDTINGIGLLIGG 199 (523)
T ss_pred hhHHHHHHHHHHHHHHHHHHH
Confidence 789999999999987766433
No 77
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.04 E-value=0.024 Score=57.72 Aligned_cols=88 Identities=14% Similarity=0.018 Sum_probs=60.7
Q ss_pred ccccHHHHHHHHHhhhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccH-----HH
Q 010376 60 RTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTY-----MD 133 (512)
Q Consensus 60 ~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y-----~~ 133 (512)
++.|.+|+.+..+.+.+|+| ++++|-+.+..|. .++.++-+.+++..-+.........++..+.++ .+| -+
T Consensus 45 g~iS~fqA~~~ala~~VG~GnI~Gva~Ai~~GGp-GAvFWMWI~allGm~~~~~e~~L~~~yr~~~~~--g~~~GGP~yy 121 (425)
T TIGR00835 45 GGVSSFQALFTSLAARVGIGNIVGVATAIAIGGP-GAVFWMWVTAFIGMATKFVESTLAQKYRERDAD--GVFRGGPMYY 121 (425)
T ss_pred CCccHHHHHHHHHHHHHhhhHHHHHHHHHHhcCC-CchHHHHHHHHHHHHHHHHHHHHHHHeeeeCCC--CCEecChHHH
Confidence 45789999999999999998 9999999777774 367777777776666555544443333221111 135 77
Q ss_pred HHHHhhCCcceeehHHH
Q 010376 134 AVKANLGGKKVIFCGLI 150 (512)
Q Consensus 134 l~~~~~G~~~~~~~~~~ 150 (512)
+-+...|||.+.+..+.
T Consensus 122 i~~gl~~k~lg~lfa~~ 138 (425)
T TIGR00835 122 IKKGLGMRWLAVLFAVF 138 (425)
T ss_pred HHHHhCccHHHHHHHHH
Confidence 88887788766665555
No 78
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.99 E-value=0.54 Score=48.30 Aligned_cols=202 Identities=16% Similarity=0.186 Sum_probs=99.8
Q ss_pred ccHHHHHHHhhCCcceeeh---HHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCC---CcccccchhhHHHHH-
Q 010376 129 YTYMDAVKANLGGKKVIFC---GLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKD---PCHMSSNGYMITFGI- 201 (512)
Q Consensus 129 ~~y~~l~~~~~G~~~~~~~---~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~---~~~~~~~~~~~i~~~- 201 (512)
.+|..+.|..||-++..+- ...+.+..+|.-. -..+..+..++.....+....+. ....+...++..+..
T Consensus 103 IpFpv~~RaSFGi~Ga~~p~l~R~i~A~~WyGvqt---y~Gg~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW 179 (497)
T COG1953 103 IPFPVLSRASFGIYGANFPALIRAIVAIVWYGVQT---YAGGLAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFW 179 (497)
T ss_pred CCchHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHH---HHhHHHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHH
Confidence 5899999999998875543 3344444444322 23334444444433322111111 111111122221111
Q ss_pred HHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHH
Q 010376 202 IEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAI 281 (512)
Q Consensus 202 ~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 281 (512)
++-.++..+.++++|++-..+..++..+++..+.....+.... ..-.+.+.. .++.....|.+..++...
T Consensus 180 ~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~gl~Iw~~~~a~g~-~~~~~~p~~---------~~~~~~~~w~~~~~~~~~ 249 (497)
T COG1953 180 VLQLLVLFKGMESIRKFETWAGPLVYIAMLGLAIWALVKAGGS-SILGELPAG---------TVSGSNSSWAFLAGIAAW 249 (497)
T ss_pred HHHHHHHhcCHHHHHHHHHHhchHHHHHHHHHHHHHHHhcCCc-CccccCCCC---------CCCcchhHHHHHHHHHHH
Confidence 2223344567899998888888777654444433333222111 111111100 022223333343333222
Q ss_pred HHHhc-cchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHh----HhhhhcCCC--CCcccccccc
Q 010376 282 AFAYS-FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGC----MGYAAFGDL--APNNLLTGFG 347 (512)
Q Consensus 282 ~faf~-~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~----~gy~~fg~~--~~~~il~~~~ 347 (512)
+-.|. ..-|+|...+.-|+| |.-.+.-.+++.+.+.+.-++|+ .++..||+. .+.+++.++.
T Consensus 250 v~~~Atl~lN~~DFsRfa~s~----~~~~~gq~~gLPv~~~l~~ligvv~tsa~~~lyG~~~w~P~di~~~~~ 318 (497)
T COG1953 250 VGFWATLALNIPDFTRFAKSQ----KAQIWGQLVGLPVNFALFSLIGVVVTSASYILYGETIWDPLDIVARFL 318 (497)
T ss_pred HHHHHHHhcCCchhhcccCCh----hhhhhccchhhhHHHHHHHHHHhhHHHHHHHhhCcccCCHHHHHHHhc
Confidence 21121 346789999999988 44444445666666666665555 456788987 3456677654
No 79
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=96.93 E-value=0.2 Score=52.73 Aligned_cols=58 Identities=16% Similarity=0.162 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHhccchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhh
Q 010376 273 RSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 333 (512)
Q Consensus 273 ~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~ 333 (512)
++...|+++.-+-.|...=-.+-.|+|+|+ |.+++-...+...++++|+++.++--.+
T Consensus 295 ~F~~~FgV~F~g~tGimAGAnMSgELk~PS---kSIP~GTl~ava~Tf~~Yvl~~flm~~t 352 (945)
T KOG1288|consen 295 DFASTFGVFFPGTTGIMAGANMSGELKAPS---KSIPKGTLSAVAFTFFVYVLVIFLMGCT 352 (945)
T ss_pred ehhhhheeeeccchhhhcCCCcCccccCcc---ccCCccchHHHHHHHHHHHHHHHHhccC
Confidence 344455555444444444456778999999 8999999999999999999987765443
No 80
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=96.75 E-value=0.015 Score=60.38 Aligned_cols=49 Identities=14% Similarity=0.078 Sum_probs=41.0
Q ss_pred ccHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhc
Q 010376 129 YTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSN 177 (512)
Q Consensus 129 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~ 177 (512)
.++.-++|..||.+|..+..+...+...|-...-..+.++.+..+.+..
T Consensus 71 l~~~v~sR~~FG~~Gs~l~~~l~~i~~igW~av~~~~~g~al~~~~~~~ 119 (440)
T PF02133_consen 71 LPTMVLSRASFGYRGSKLPSLLRAISAIGWFAVNTWLGGQALAALLGII 119 (440)
T ss_dssp --HHHHTTTTS-TTTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCC
T ss_pred CCchhcchhccCcchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhh
Confidence 4788899999999999999999989888888888889999999988643
No 81
>KOG2083 consensus Na+/K+ symporter [Inorganic ion transport and metabolism]
Probab=96.51 E-value=0.01 Score=61.22 Aligned_cols=233 Identities=14% Similarity=0.106 Sum_probs=129.4
Q ss_pred HHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceeeh
Q 010376 68 SSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFC 147 (512)
Q Consensus 68 ~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~ 147 (512)
..|+.+-|+ .|-++|...|+|...+++++.+...++..|..=-.-...+..-+.| ..|--+++- +|+-.+-.+
T Consensus 41 mlni~gv~l---flrl~wivgqagi~~~~~ii~~~~~vt~it~lSa~~I~t~~~vk~G---g~yflis~s-lg~efggsi 113 (643)
T KOG2083|consen 41 MLNIFGVIL---FLRLGWIVGQAGIGNSVLIIGLTTVVTLITVLSAIAIVTRGQVKSG---GVYFLISRS-LGPEFGGSI 113 (643)
T ss_pred hHHHHHHHH---hhhhhheeecchhhhhHHHHHHHHHHHHHHHHhHheeeecceeccC---cEEEEEEec-ccccccchh
Confidence 344444443 4778999999999888888777666665554433332222111222 355555544 788888888
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchhhHHHHHHHHHHH
Q 010376 148 GLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQVWWLSIVAAIMSF 227 (512)
Q Consensus 148 ~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l~~~s~~~~~~~~ 227 (512)
.++..+.+.-.+..|.+..++.+..+++... ....+. ...+..++++.+ ++...+|.+.+..++-+
T Consensus 114 giIy~f~~aVa~am~~vgfaEsv~~l~~~~s--------~~~i~g--i~~vt~~ill~i----~~ag~~w~~k~q~~ll~ 179 (643)
T KOG2083|consen 114 GIIYAFANAVATAMYVVGFAESVAHLFETES--------KEMIDG--IGSVTVLILLAI----NVAGVEWEAKLQIVLLL 179 (643)
T ss_pred HHHHHHHHHHHHHHhhhhHHHHHHHHHHhcc--------HHHhcc--hhHHHHHHHHHh----hhccchhHHHHHHHHHH
Confidence 8888999999999999999999999986421 001111 112233333333 44556677766665544
Q ss_pred HHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccc-hhhHHHHHHHHHHHHHHhccchhhHhHHhhcCCCchhhh
Q 010376 228 TYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTG-TQKLWRSLQALGAIAFAYSFSIILLEIQDTIRSPPAEYK 306 (512)
Q Consensus 228 ~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~ 306 (512)
. +.+.+...+....-.+. +.......+..+...+..-+ ..+-..+|..|+++.=|..|.-.=..+..++|+|+ +
T Consensus 180 i-l~iai~~f~~gs~~~~~-~~~~g~~~~~a~~~~~n~~~~~~~~~tfF~vf~vfFpaatgilaG~nisGdL~~Pq---~ 254 (643)
T KOG2083|consen 180 I-LLIAIADFLVGSFFSPN-EFSSGFFGYRADIFVENLNPDIDPGYTFFSVFAVFFPAATGILAGANISGDLKDPQ---K 254 (643)
T ss_pred H-HHHHHHHhhhhhccChh-hhcccccccchhhcccCCCCCcCCCCceEeeeeeecchhhhhhccccccCCCCCch---h
Confidence 2 11222222221111111 00000000101000000000 00001344555555555555555567888999998 8
Q ss_pred hhhhHHHHHHHHHHHHHHHH
Q 010376 307 TMKKATLFSIIVTTTFYLLC 326 (512)
Q Consensus 307 ~~~~~i~~s~~i~~~~Y~~~ 326 (512)
..++....+....+.+|+.+
T Consensus 255 ~IP~GaL~Ai~vst~~yl~~ 274 (643)
T KOG2083|consen 255 AIPLGALLAIGVSTLLYLIF 274 (643)
T ss_pred hcccchhhhhhhhhhhhhhh
Confidence 99999999999999999643
No 82
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=96.47 E-value=0.6 Score=46.14 Aligned_cols=105 Identities=13% Similarity=0.155 Sum_probs=83.4
Q ss_pred cHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCc
Q 010376 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (512)
Q Consensus 63 s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 142 (512)
+.+....+=..++-|+|-..=|-.-.+-||.+++++.++-+++..--.....-...- +++. .+..+++++..||+
T Consensus 53 ~~~vlfghhf~sIAGaGPI~GPi~aa~~GwlPa~lWI~~G~if~GaVHD~~sl~~Sv---R~~G--~Si~~i~~~~lG~~ 127 (376)
T PF02554_consen 53 NKWVLFGHHFASIAGAGPIVGPILAAQFGWLPALLWIVFGCIFAGAVHDYGSLMASV---RHKG--KSIGEIAGKYLGKR 127 (376)
T ss_pred chHHhhHHHHHHHhccccchHHHHHHHhcchHHHHHHHHccHHHHHHHHHHHHhhhh---cCCC--ccHHHHHHHHHHHH
Confidence 345567777788999999988988889999999999988888777666666553321 1111 39999999999999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHHhhhHHH
Q 010376 143 KVIFCGLIQYLNLFGVAIGYTIAASVSMMA 172 (512)
Q Consensus 143 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~ 172 (512)
++.+..+..++.+.....++....++.+..
T Consensus 128 ~~~lf~~f~~~~lilV~avF~~v~a~~~~~ 157 (376)
T PF02554_consen 128 AKKLFLIFIFFLLILVIAVFADVVANTFVN 157 (376)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 999999999999988888888877777654
No 83
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.13 E-value=1.9 Score=43.99 Aligned_cols=188 Identities=13% Similarity=0.128 Sum_probs=104.8
Q ss_pred ccHHHHHHHhhC-CcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhc
Q 010376 129 YTYMDAVKANLG-GKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFS 207 (512)
Q Consensus 129 ~~y~~l~~~~~G-~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~ 207 (512)
+++.|....-++ +..|.+..+...+..+...++-++..+..+..+++ .+...-.++..++.+.-.
T Consensus 104 yT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--------------v~~~vgv~ig~ilm~~Yv 169 (529)
T COG4147 104 YTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--------------VPYHVGVVIGGILMMVYV 169 (529)
T ss_pred cchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--------------CCceeehhhHhHHHHHHH
Confidence 699996554454 46677777777777788889999999999888874 223344455556666666
Q ss_pred cCCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCC-CCCccccccccccCCCcccchhhHHHHHHHHHHHHHHhc
Q 010376 208 QIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSF-KGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAYS 286 (512)
Q Consensus 208 ~~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf~ 286 (512)
....++...|++.+.-+..+...++.......+...+... ...-...+.-.+++ +...+.....+-.+.++.+.--..
T Consensus 170 v~GGM~atTW~Qi~qavlLi~a~~i~ai~i~~~~~g~~~~~~~~~~~~~~~~~~~-~~~~pGl~~~~~i~~isl~~aLm~ 248 (529)
T COG4147 170 VLGGMKATTWVQIIQAVLLIVAALIMAIMIMWKLGGNPNPLFAEAVTVHPKDDGS-DIMEPGLLYKDPIDFISLGFALMV 248 (529)
T ss_pred HhcchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCcchHHHHHhhcCcccCcc-cccCCCCcccCHHHHHHHHHHHHH
Confidence 6778999999999888776644444333333333221110 00000000000000 001111111122233332222223
Q ss_pred cchhhHhHHhhc-CCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhh
Q 010376 287 FSIILLEIQDTI-RSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAA 333 (512)
Q Consensus 287 ~~~~i~~i~~em-~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~ 333 (512)
|...+|.+.-.- --|+ .|.-++++.++......+|+..-+.|+.+
T Consensus 249 GTAgLPHil~RFfTvp~--~k~AR~Sv~wA~~fIg~fYi~~~~ig~~A 294 (529)
T COG4147 249 GTAGLPHILMRFFTVPD--AKEARKSVFWATGFIGIFYILTPIIGAGA 294 (529)
T ss_pred ccCCCCeEEEEEEecCc--HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455443221 2232 27888999999999999999887777763
No 84
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=95.98 E-value=2 Score=43.16 Aligned_cols=82 Identities=9% Similarity=0.152 Sum_probs=54.7
Q ss_pred cHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc-
Q 010376 130 TYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ- 208 (512)
Q Consensus 130 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~- 208 (512)
+..|..++.+||+..++..+...+......++-+...+..++.++. .+...+.++.++..+.+.+
T Consensus 43 ~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a~al~ll~g--------------~~~~~~~~~~~~~~~~ll~~ 108 (358)
T PF01566_consen 43 GLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIAIALNLLFG--------------IPLWIWVLLVAVIAILLLWL 108 (358)
T ss_pred ChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CCcHHHHHHHHHHHHHHHHH
Confidence 6778878889999988888888888888888877777777765542 3334555555555444444
Q ss_pred -CCCcchhhHHHHHHHHH
Q 010376 209 -IPDFDQVWWLSIVAAIM 225 (512)
Q Consensus 209 -~~~l~~l~~~s~~~~~~ 225 (512)
.++.+.+.....+-+..
T Consensus 109 ~~~~y~~~E~~~~~lv~~ 126 (358)
T PF01566_consen 109 SSGGYRRLERILKVLVAV 126 (358)
T ss_pred HhccchHHHHHHHHHHHH
Confidence 55667776654433333
No 85
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.57 E-value=1.9 Score=44.70 Aligned_cols=104 Identities=17% Similarity=0.218 Sum_probs=78.6
Q ss_pred cHHHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCc
Q 010376 63 NFWTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGK 142 (512)
Q Consensus 63 s~~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~ 142 (512)
+.+...-+=.-++-|+|-+.=|---++.||.++.+.+++-.++..--...++--... +++. .|..+++++.+|+.
T Consensus 53 nk~vlfGhHFaaIAGAGPivGPvlAAq~G~Lp~~LWIl~G~VfaGaVhD~~~L~~Sv---R~~G--~Si~~ia~~~lG~~ 127 (575)
T COG1966 53 NKWVLFGHHFASIAGAGPIVGPALAAQYGWLPAFLWILLGCVFAGAVHDYFSLMLSV---RHGG--KSIGEIAGKYLGRT 127 (575)
T ss_pred CchhhhHHHHHHHhccCcchhHHHHHHhcCcHHHHHHHHhhhhhhhhhhhhheeeee---ccCC--ccHHHHHHHHhhhh
Confidence 345566677778999999999999999999999999998888777666666553221 1122 38999999999999
Q ss_pred ceeehHHHHHHHHHHHHHHHHHHHhhhHH
Q 010376 143 KVIFCGLIQYLNLFGVAIGYTIAASVSMM 171 (512)
Q Consensus 143 ~~~~~~~~~~~~~~g~~i~y~i~~~~~l~ 171 (512)
.+.+..+...+.......+........+.
T Consensus 128 a~~~~~~~~l~iliiv~Avfa~vv~~~l~ 156 (575)
T COG1966 128 AKVFFLLLALILLILVGAVFAAVIAKLLA 156 (575)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99999888877776666666666555554
No 86
>PRK15015 carbon starvation protein A; Provisional
Probab=94.12 E-value=0.64 Score=49.22 Aligned_cols=101 Identities=13% Similarity=0.151 Sum_probs=77.0
Q ss_pred HHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCccee
Q 010376 66 TTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVI 145 (512)
Q Consensus 66 ~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~ 145 (512)
--.-+=..++-|+|-+.=|..-.+.||.++++..++-.++..--..+..-.... +++. .+..+++++..|++++.
T Consensus 87 VLfGHHFasIAGAGPivGPvlAa~~GwlP~~LWIl~G~vf~GaVhD~~~L~~S~---R~~G--rSig~ia~~~iG~~~~~ 161 (701)
T PRK15015 87 VLFGHHFAAIAGAGPLVGPVLAAQMGYLPGMIWLLAGVVLAGAVQDFMVLFVST---RRDG--RSLGELVKEEMGPTAGV 161 (701)
T ss_pred chhHHHHHHHhccCccHHHHHHHHHcchHHHHHHHHcceeechhhhhhheeeee---cCCC--ccHHHHHHHHhhHHHHH
Confidence 355566778899999999999889999999999988877766665555553221 1122 39999999999999999
Q ss_pred ehHHHHHHHHHHHHHHHHHHHhhhHH
Q 010376 146 FCGLIQYLNLFGVAIGYTIAASVSMM 171 (512)
Q Consensus 146 ~~~~~~~~~~~g~~i~y~i~~~~~l~ 171 (512)
+..+...+.+.....++...+.+.+.
T Consensus 162 lfli~i~~iliiviAvfalvvv~al~ 187 (701)
T PRK15015 162 IALVACFMIMVIILAVLAMIVVKALT 187 (701)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 99888888777777776666666553
No 87
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=93.72 E-value=9.4 Score=39.21 Aligned_cols=76 Identities=11% Similarity=0.087 Sum_probs=48.5
Q ss_pred cHHHHHHHHHhhhhhhhhhHHHHHHH-HhC--hhHHHHHHHHHHHHHHHHH-HHHHHhhhcCCCCCCcccccHHHHHHHh
Q 010376 63 NFWTTSSHIITAVIGSGVLSLAWAIA-QLG--WVAGPTVLILFALVNLYTA-NLLSQCYRSGDPVTGQRNYTYMDAVKAN 138 (512)
Q Consensus 63 s~~~a~~~li~~~iG~GiL~lP~af~-~~G--~~~gii~lii~~~~~~~s~-~~l~~~~~~~~~~~~~~~~~y~~l~~~~ 138 (512)
..+..-+.+..-..|+|=|-.|-..- ++| |..+.+.+++.++.--.-+ ..+.+. + .++++++++
T Consensus 9 ~~l~iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~--------~---g~~~~l~~r- 76 (439)
T PRK15433 9 DIIALGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKV--------G---GGVDSLSTP- 76 (439)
T ss_pred HHHHHHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhc--------C---CCHHHHhhh-
Confidence 35667888889999999999988754 344 6666777666665432222 111111 1 278899988
Q ss_pred hCCcceeehHHH
Q 010376 139 LGGKKVIFCGLI 150 (512)
Q Consensus 139 ~G~~~~~~~~~~ 150 (512)
.||+...+....
T Consensus 77 v~~~f~~~f~~~ 88 (439)
T PRK15433 77 IGKVAGVLLATV 88 (439)
T ss_pred cchHHHHHHHHH
Confidence 677766555333
No 88
>PHA02764 hypothetical protein; Provisional
Probab=93.51 E-value=4.5 Score=39.10 Aligned_cols=96 Identities=15% Similarity=0.094 Sum_probs=62.7
Q ss_pred CCCcccccccHHHHHH-HHHhhhhhhhhhHHHHHHHHh--ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc
Q 010376 54 DDGRLKRTGNFWTTSS-HIITAVIGSGVLSLAWAIAQL--GWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYT 130 (512)
Q Consensus 54 ~~~~~~~~~s~~~a~~-~li~~~iG~GiL~lP~af~~~--G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~ 130 (512)
+....-|+.|.+.+++ |+.+...|.++ +.|+-++.. |.. .+...++.++++...+....|...+.+. .| .+
T Consensus 6 eSSGLVREvs~lDAF~~Nl~~m~~Gi~I-s~~~l~a~l~pG~n-lLLAWLLGGLlALPgAL~YAELGSAmPr-AG---Gd 79 (399)
T PHA02764 6 KSSGIIKSFNILDIFSINLLYMGILSGI-SYPLFVSSLLKNVN-LLFAILIGAVFEIPLLLMYYKLTTKFPL-NG---GD 79 (399)
T ss_pred hcCCceeeccHHHHHHHHHHhhccchhH-HHHHHHhhcCCchh-HHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC---ce
Confidence 4455677888888887 55555555544 556544433 433 4566667777777777778887766543 33 36
Q ss_pred HHHHHHHhhCCcceeehHHHHHHHHH
Q 010376 131 YMDAVKANLGGKKVIFCGLIQYLNLF 156 (512)
Q Consensus 131 y~~l~~~~~G~~~~~~~~~~~~~~~~ 156 (512)
|..+-|. ||++.+++..+..++...
T Consensus 80 YVYISRA-FGP~~GFLvG~a~WLtl~ 104 (399)
T PHA02764 80 YAYIRTA-FSSKFYTIFGISLWLTYV 104 (399)
T ss_pred EEEhHHh-hCccHHHHHHHHHHHHHH
Confidence 6666655 999999888887776543
No 89
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.96 E-value=12 Score=38.32 Aligned_cols=77 Identities=14% Similarity=0.167 Sum_probs=50.1
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHH-HhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhC
Q 010376 64 FWTTSSHIITAVIGSGVLSLAWAIA-QLG--WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (512)
Q Consensus 64 ~~~a~~~li~~~iG~GiL~lP~af~-~~G--~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 140 (512)
.+..-+.+..-..|+|=|-.|-..- ++| |+.+.+.+++.++.--.-+.+-.-. .+ .++++++++ .|
T Consensus 5 ~l~ig~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lgvia~~~-------~~---~~~~~l~~~-v~ 73 (427)
T PF05525_consen 5 ILIIGFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLGVIAVAK-------SG---GGIEDLASR-VG 73 (427)
T ss_pred hhhHHHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhh-------cC---CCHHHHhcc-cC
Confidence 4567778888899999999998754 334 7777777777776544333222111 11 278899888 67
Q ss_pred CcceeehHHHH
Q 010376 141 GKKVIFCGLIQ 151 (512)
Q Consensus 141 ~~~~~~~~~~~ 151 (512)
|+...+.....
T Consensus 74 ~~f~~if~~~i 84 (427)
T PF05525_consen 74 PKFALIFTILI 84 (427)
T ss_pred cHHHHHHHHHH
Confidence 77666554433
No 90
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=92.96 E-value=6.1 Score=40.31 Aligned_cols=83 Identities=24% Similarity=0.186 Sum_probs=51.8
Q ss_pred ccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHH---HHHHhhhcCCCCCCcccccHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTAN---LLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~---~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
++++.|.+|+.+.-+.+.+|+|= .+..-|..-.|.. ++.++-+.+++..-+.. .|..-+|+.++....+. .=.+
T Consensus 15 ~~g~iS~fqA~~~ala~~vG~GNI~GVa~AI~~GGPG-AiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~G-GP~y 92 (416)
T PF01235_consen 15 EEGGISPFQALCTALAGTVGTGNIAGVATAIAIGGPG-AIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRG-GPMY 92 (416)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHhhchh-HHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEee-cHHH
Confidence 34468899999999999999986 5678888777765 67777777776555443 33444444332211222 2334
Q ss_pred HHHHhhCCc
Q 010376 134 AVKANLGGK 142 (512)
Q Consensus 134 l~~~~~G~~ 142 (512)
..++.+|++
T Consensus 93 yi~~gl~~k 101 (416)
T PF01235_consen 93 YIEKGLGSK 101 (416)
T ss_pred HHHHHhccc
Confidence 444556654
No 91
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=92.53 E-value=1.2 Score=44.88 Aligned_cols=74 Identities=19% Similarity=0.284 Sum_probs=57.1
Q ss_pred ccHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhcc
Q 010376 129 YTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQ 208 (512)
Q Consensus 129 ~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~ 208 (512)
.-..+++++.||+.|..+..+.+.+.|++++++.....++.+..+.+ ..+++.|.++..+..+.++.
T Consensus 255 ~~l~~~a~~~~G~~G~~ll~i~v~lACLtT~iGli~~~a~~f~~~~~-------------k~~y~~~v~~~~l~s~~ia~ 321 (378)
T TIGR00796 255 QILSAYSQHLFGSLGSFLLGLIITLACLTTAVGLTTACSEYFHKLVP-------------KLSYKTWVIVFTLFSFIVAN 321 (378)
T ss_pred HHHHHHHHHHcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcC-------------CCCHHHHHHHHHHHHHHHHH
Confidence 36788999999999999999999999999999999999999988753 24556666666665555543
Q ss_pred CCCcchhh
Q 010376 209 IPDFDQVW 216 (512)
Q Consensus 209 ~~~l~~l~ 216 (512)
. .++++-
T Consensus 322 ~-Gl~~Ii 328 (378)
T TIGR00796 322 L-GLTQII 328 (378)
T ss_pred h-CHHHHH
Confidence 3 344433
No 92
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=92.32 E-value=3.7 Score=43.42 Aligned_cols=246 Identities=17% Similarity=0.130 Sum_probs=115.8
Q ss_pred cccccHHHHHHHHHhhhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCC--CCCcccccHHHHH
Q 010376 59 KRTGNFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDP--VTGQRNYTYMDAV 135 (512)
Q Consensus 59 ~~~~s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~--~~~~~~~~y~~l~ 135 (512)
.|+.-++-..+.+..+.+|++ ++++|--..+.|.-..... ...... .+..++-..+- +.+.. ..|+++-
T Consensus 44 gr~m~~~Pv~~SL~aS~~s~~~~~gl~~e~~~~G~~~~~~~-----~~~l~~--~~~~~~~f~Pvf~~~~v~-~~~eYl~ 115 (585)
T KOG2349|consen 44 GRSMVWLPVAASLFASNISSVHFLGLPGEGYAYGIQYWFFE-----WNALLS--VLLLGWIFIPVFYRLGVT-TMYEYLE 115 (585)
T ss_pred CCcceEEEeehhhhhhhhcceeeecCchHHHHHHHHHHHHH-----HHHHHH--HHhhheEEEEEEEecCee-ehhHHHH
Confidence 455556666667776677655 4788887766664321111 111111 12222211111 01111 2455555
Q ss_pred HHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCcchh
Q 010376 136 KANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDFDQV 215 (512)
Q Consensus 136 ~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l~~l 215 (512)
.+ ||+..+.+..+...+..+.-.-.++..-+-.+++.... ......++..+++..-...-.++.+
T Consensus 116 ~R-f~~~~r~l~~l~f~l~~~~~l~v~~y~pal~~~qvtg~--------------~~~l~~~~~~~ic~~YT~~GGlkaV 180 (585)
T KOG2349|consen 116 KR-FGGRVRYLATLSFILMIFLYLPVDMYAPALAINQVTGI--------------NLYLIVVILGLICVFYTALGGLKAV 180 (585)
T ss_pred HH-hcccchhhHHHHHHHHHHhheeeeEeehHHHHHHHhcc--------------CceeehHHHHHHHHHHHHhcCeeEE
Confidence 55 77776666655555554444333333333334443321 1111122233333334445567777
Q ss_pred hHHHHHHHHHHHHHHHHHHhhhhhhhhc-C-----CCCCCCcccc-ccccccCCCcccchhhHHHHHHH-HHHHHHHhcc
Q 010376 216 WWLSIVAAIMSFTYSTAGLGLGIGKVAG-N-----RSFKGSLTGI-SIGTLTSAGTVTGTQKLWRSLQA-LGAIAFAYSF 287 (512)
Q Consensus 216 ~~~s~~~~~~~~~~~~iii~~~i~~~~~-~-----~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~faf~~ 287 (512)
-|+=.++.+.++.-...+.+.+..+... + ...+...... ++..| ++..+.+|.++.+ ...-..-|..
T Consensus 181 i~TDv~Q~~iml~~~~~v~i~gt~~vGG~~~V~e~a~~~gr~~~~~~~~~d-----p~vr~t~W~~~~Gg~~~~l~~~~v 255 (585)
T KOG2349|consen 181 IWTDVVQTVIMLGGVLAVMIKGTMKVGGLGRVLEKAFDAGRVNFVAEFLRD-----PTVRHTPWSLLFGGTIMWLSYYGV 255 (585)
T ss_pred EEhhHHHHHHHHHHHHHHhheeehhcCcccceeeecccCCceeecccccCC-----CcccccchhHhcCCcHHHHHHHhh
Confidence 7777777777664444444333322110 0 0011111111 12222 4445556665544 3344444545
Q ss_pred chhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHH---HHHHHhHhhhhcCC
Q 010376 288 SIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTF---YLLCGCMGYAAFGD 336 (512)
Q Consensus 288 ~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~---Y~~~g~~gy~~fg~ 336 (512)
+.+ .+++-+.-|+. |+.+++........++. +...|++-|..|-+
T Consensus 256 nQ~--~VQR~lsl~sl--k~ak~~~~~~~~~~~l~~~~~~~~G~i~~~~Y~~ 303 (585)
T KOG2349|consen 256 NQL--IVQRYLSLPSL--KHAKPSLLLFGYGVLLIMFIMVFVGMIIYALYTD 303 (585)
T ss_pred hHH--HHhHHhccccH--HHhhhhhhhhhhHHHHHHHhhcccceeEeeeccc
Confidence 544 45666665553 77777766555544444 45566666666643
No 93
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=92.07 E-value=1.4 Score=44.96 Aligned_cols=119 Identities=18% Similarity=0.271 Sum_probs=77.8
Q ss_pred hhhhhhhhh---HHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceeehHH
Q 010376 73 TAVIGSGVL---SLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGL 149 (512)
Q Consensus 73 ~~~iG~GiL---~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 149 (512)
+++-.-|.- ..-....++|.+.++.+.++-..+++..+..-... .+..++ ..=..+++++.||+.|..+..+
T Consensus 207 ~~i~~~g~~~~k~~~~~~~~ag~ia~~lL~~IY~gL~~lGa~~~~~~---~~~~~g--~~lL~~i~~~~~G~~G~~ll~i 281 (427)
T PF05525_consen 207 NAIRQKGYKDKKEIKKYTIKAGLIAGILLALIYGGLAYLGATSSGSF---PDDING--AELLSQIANHLFGSAGQILLGI 281 (427)
T ss_pred HHHHHhCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCcccc---cCCCCH--HHHHHHHHHHHcChhHHHHHHH
Confidence 444444444 33444445666655555444444333322221111 111122 2357888999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccC
Q 010376 150 IQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI 209 (512)
Q Consensus 150 ~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 209 (512)
.+.+.|+-++++-...++|..++.++ ..+++.|.++.+++-+.++..
T Consensus 282 iv~lACLTTaIGL~~a~a~yf~~~~~-------------kisY~~~v~i~~i~S~~ian~ 328 (427)
T PF05525_consen 282 IVFLACLTTAIGLISACAEYFSELFP-------------KISYKVWVIIFTIFSFIIANL 328 (427)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhc-------------ccChHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999885 356677887777777766544
No 94
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=91.57 E-value=18 Score=37.02 Aligned_cols=246 Identities=13% Similarity=0.088 Sum_probs=117.6
Q ss_pred cHHHHHHHHHhhhhhhh-hhHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCC
Q 010376 63 NFWTTSSHIITAVIGSG-VLSLAWAIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGG 141 (512)
Q Consensus 63 s~~~a~~~li~~~iG~G-iL~lP~af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~ 141 (512)
|-..=+...+++.+|-| +.-.||...+-|-. ..++.-++..+..---.++.|-.--... .+....+|+.+.. +
T Consensus 10 SrlGFILAa~GsAVGLGNiWrFPy~~~~nGGg-AFll~yli~~l~~GiPlli~Ef~iGr~~-~~~~~~a~~~l~~----~ 83 (439)
T COG0733 10 SRLGFILAAAGSAVGLGNIWRFPYMAGENGGG-AFLLPYLIFLLLVGIPLLLAEFAIGRRG-RKNAVGAFRKLAP----K 83 (439)
T ss_pred hHHHHHHHHHHHHhcccccccCCeEeeecCcc-hHHHHHHHHHHHHhHHHHHHHHHhhhhc-CCChhHHHHHhcc----C
Confidence 34556777889999977 47789986655433 2333334444444444555664321010 1111235666654 3
Q ss_pred cceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCc-----cc-ccchhhH---HHHHHHHhhccCCCc
Q 010376 142 KKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPC-----HM-SSNGYMI---TFGIIEVLFSQIPDF 212 (512)
Q Consensus 142 ~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~-----~~-~~~~~~~---i~~~~~~pl~~~~~l 212 (512)
+....+.+...+..+..+.-|.++.+=.+..+..........+.... .. ++....+ +...++..+...|..
T Consensus 84 ~~~~~~G~~gv~~~~~i~sfYsvI~GWil~Y~~~s~tg~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~lt~~iv~~GV 163 (439)
T COG0733 84 KKWEWIGWFGVLGGFLILSFYSVIGGWILSYLVKSLTGALPDTGEQFAQLFGQTISNPGLAVIFHLLFLVLTALIVSRGV 163 (439)
T ss_pred ccchhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCChhHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHHHhH
Confidence 44445566667777888888888888777776644221111000000 00 1111111 111222222233444
Q ss_pred ch-hhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCcccccc--ccccCCCcccchhhHHHHHHHHHHHHHHhccch
Q 010376 213 DQ-VWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISI--GTLTSAGTVTGTQKLWRSLQALGAIAFAYSFSI 289 (512)
Q Consensus 213 ~~-l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~faf~~~~ 289 (512)
++ ..+.+.+-.-..++.+++.++.. .-. ++..++.++ .+| -+...+..-...++|...|+.+--.
T Consensus 164 ~~GIEk~~kimMP~Lfvl~i~Lvi~~---~tL----pGA~~G~~f~l~PD-----~s~l~~~~v~~~AlGQ~FFsLSlG~ 231 (439)
T COG0733 164 KKGIEKANKIMMPLLFVLFIILVIRA---VTL----PGAMEGLKFLFKPD-----FSKLTDPKVWLAALGQAFFSLSLGF 231 (439)
T ss_pred HhhHHHHHHHHHHHHHHHHHHHHHHH---HcC----ccHHHHHHHHhcCC-----HHHcCchhhHHHHHHHHHHHHHHHH
Confidence 33 66666666655443333333222 211 122223221 221 1111112245577888888776444
Q ss_pred -hhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHh
Q 010376 290 -ILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMG 330 (512)
Q Consensus 290 -~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~g 330 (512)
.+.+.-..+++. +++.+.-......-+.+=++.|+.-
T Consensus 232 g~mitYsSYL~k~----~~l~~sa~~v~~~n~~~s~lAGl~I 269 (439)
T COG0733 232 GIMITYSSYLSKK----SDLVSSALSIVLLNTLISLLAGLVI 269 (439)
T ss_pred HHHHHHHhhcCcc----cchhhhHHHHHHHHHHHHHHHHHHH
Confidence 445555556655 6777665555555555544444433
No 95
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=87.98 E-value=30 Score=34.44 Aligned_cols=146 Identities=12% Similarity=0.085 Sum_probs=88.1
Q ss_pred ccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHH-HHHHHHHHHH----HhhhcCCCCCCcccccHHH
Q 010376 60 RTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFAL-VNLYTANLLS----QCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 60 ~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~-~~~~s~~~l~----~~~~~~~~~~~~~~~~y~~ 133 (512)
|+.+-+--.+....+-+++.- ++=|-+-.+.|+-. +++..+=+ ..+.+.-.+. +-.++++. .+..|
T Consensus 39 Rsmgg~VlAmt~~aTYisaSSFigGpgaayk~Glgw--vlLa~iqvp~~~l~lgvlgkk~~~~ar~~nA------ltI~D 110 (473)
T COG4145 39 RSMGGIVLAMTFTATYISASSFIGGPGAAYKYGLGW--VLLAMIQVPTVWLALGVLGKKFAILAREYNA------LTIND 110 (473)
T ss_pred CcccceehhhHHHHHHHHHhhhcCCCcHHHHhchHH--HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCC------eeHHH
Confidence 444444455555555555433 44577766666533 22222222 2233333333 33444332 47777
Q ss_pred HHHHh-hCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCCCc
Q 010376 134 AVKAN-LGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIPDF 212 (512)
Q Consensus 134 l~~~~-~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~~l 212 (512)
+-++- =++.-.++..+.+.+...+.+.+-.+..+..++... ..+++.-.+++++.+..-.....+
T Consensus 111 ~l~~RY~s~fl~~las~~Lifff~~~m~~qfiGgarLlE~~~--------------gidY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 111 LLFARYQSRFLVWLASLSLIFFFVGAMTVQFIGGARLLETAL--------------GIDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHhcchHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHH--------------CCCchhhHHHHHHHHHHHHhhcce
Confidence 77654 355667777778888888888899999999888876 344555667777777776667777
Q ss_pred chhhHHHHHHHHHHH
Q 010376 213 DQVWWLSIVAAIMSF 227 (512)
Q Consensus 213 ~~l~~~s~~~~~~~~ 227 (512)
+.+...-.++-..++
T Consensus 177 RAvvltD~IQG~vml 191 (473)
T COG4145 177 RAVVLTDTIQGLVML 191 (473)
T ss_pred eeeehHHHHHHHHHH
Confidence 777776666665555
No 96
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=87.74 E-value=9.6 Score=38.44 Aligned_cols=119 Identities=17% Similarity=0.249 Sum_probs=77.0
Q ss_pred hhhhhhhhhHHHH---HHHHhChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceeehHH
Q 010376 73 TAVIGSGVLSLAW---AIAQLGWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGL 149 (512)
Q Consensus 73 ~~~iG~GiL~lP~---af~~~G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~ 149 (512)
|+.=.-|+-.-.. ....+|++.++.+-++-..+.+.. -..++.....+....=.++..++.||+.|..+...
T Consensus 209 ~alk~~g~~~~~~~~~~~~~aglIa~i~La~iY~~L~ylG-----a~s~~~~~~~~nG~~IL~~~s~~~fG~~G~~lL~~ 283 (431)
T COG1114 209 NALKSKGVTTKKQIIKYTIKAGLIAAILLALIYLSLFYLG-----ATSASAAGLAANGGQILSAYSQHLFGSYGSILLGL 283 (431)
T ss_pred HHHHHhccCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc-----cchHhhcccccchHHHHHHHHHHHhchhhHHHHHH
Confidence 4444445544333 333567766555544444444433 11111111112222357788899999999999999
Q ss_pred HHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccC
Q 010376 150 IQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI 209 (512)
Q Consensus 150 ~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 209 (512)
++.+.|.-++++-...++|..+..++ ..++..|..++.+.-+.+...
T Consensus 284 iv~lACLTTaiGLi~a~aefF~~~~p-------------~~SY~~~v~if~i~sflvan~ 330 (431)
T COG1114 284 IVFLACLTTAVGLIVACAEFFSKLVP-------------KLSYKTWVIIFTLISFLVANL 330 (431)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhcc-------------cccHHHHHHHHHHHHHHHHHh
Confidence 99999999999999999999999886 345567777777766665443
No 97
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=86.89 E-value=30 Score=35.40 Aligned_cols=89 Identities=24% Similarity=0.124 Sum_probs=54.1
Q ss_pred ccccccHHHHHHHHHhhhhhhhh-hHHHHHHHHhChhHHHHHHHHHHHHHHHHHH---HHHHhhhcCCCCCCcccccHHH
Q 010376 58 LKRTGNFWTTSSHIITAVIGSGV-LSLAWAIAQLGWVAGPTVLILFALVNLYTAN---LLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 58 ~~~~~s~~~a~~~li~~~iG~Gi-L~lP~af~~~G~~~gii~lii~~~~~~~s~~---~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
.++..|.+|+.+.-+.+-+|+|= -+.+-|.+-.|.. .+.++=+++++..-+.. .|...+|+.++...-+...--+
T Consensus 59 ~~~~vS~FqAl~~sla~~VGtGNIaGVAtAI~~GGPG-AvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yY 137 (452)
T COG1115 59 GKGGVSSFQALMTSLAARVGTGNIAGVATAIALGGPG-AVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYY 137 (452)
T ss_pred CCCCcChHHHHHHHHHhccCcchHHHHHHHHHcCCCc-cHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHH
Confidence 44567899999999999999996 4578888777764 57776666665554443 4444555444333333333444
Q ss_pred HHHHhhC-CcceeehH
Q 010376 134 AVKANLG-GKKVIFCG 148 (512)
Q Consensus 134 l~~~~~G-~~~~~~~~ 148 (512)
+-+. +| ||...++.
T Consensus 138 i~kG-l~~r~l~v~FA 152 (452)
T COG1115 138 IEKG-LGMRWLAVLFA 152 (452)
T ss_pred HHhh-cCCcHHHHHHH
Confidence 4444 44 33344443
No 98
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=80.93 E-value=19 Score=36.98 Aligned_cols=66 Identities=15% Similarity=0.243 Sum_probs=54.1
Q ss_pred cHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccC
Q 010376 130 TYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQI 209 (512)
Q Consensus 130 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~ 209 (512)
=.....++.+|+++..+..+.+.+.|+.++++-...+++.+++.++ .+++.+.++.+++.++++..
T Consensus 266 il~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--------------isY~~~v~i~~l~S~~lSn~ 331 (439)
T PRK15433 266 ILHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--------------LSYRTLVFILGGFSMVVSNL 331 (439)
T ss_pred HHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--------------CcHHHHHHHHHHHHHHHHHh
Confidence 3556677889999999999999999999999999999999988652 45567777777777776544
No 99
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=75.52 E-value=21 Score=36.64 Aligned_cols=182 Identities=14% Similarity=0.085 Sum_probs=99.8
Q ss_pred hhhhhHHHHHHHHHHHHH-HHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHH--HHHHhhhhhccchHHHHH
Q 010376 306 KTMKKATLFSIIVTTTFY-LLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVV--HLVGAYQVFCQPLFAFVE 382 (512)
Q Consensus 306 ~~~~~~i~~s~~i~~~~Y-~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i--~~~~s~pl~~~p~~~~l~ 382 (512)
++-++++..+..+..... ++....++..|+. ..++...+.- .+..-...+....... ....++|...++.+....
T Consensus 221 ~~~~~~~~k~~~~~~~~~~vlyi~~~~~~~~~-~~~~~~~~il-~~~~~~~~~l~~~~~~~~~~~~~~~~~~f~~~Ai~t 298 (415)
T COG0814 221 KNSKKAVRKAILIGSLIALVLYILVGFFVFGC-FGSLVFGNIL-AAKEQNISLLSALAGVINSPILSIALNIFALFAIAT 298 (415)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-cCcccHHHHH-HccCchHHHHHHHHHhhcchHHHHHHHHHHHHHHHH
Confidence 344443555555544444 3566667777774 4444444431 2223344444444332 223677888888777666
Q ss_pred HHhhccCCCCcccccccccCCCCccccchhHHHHHHHHHHHHHHHHHHHhccc-hHHHHHHhhhhhhhhhhhhhhhhhhh
Q 010376 383 KWSAKKWPKSDLVTAEYEIPIPFWGVYQLNLFRLVWRTLFVVLTTLISMLLPF-FNDVVGILGAMGFWPLTVYFPIEMYK 461 (512)
Q Consensus 383 ~~~~~~~~~s~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~ia~~vp~-~~~i~~l~Ga~~~~~l~fi~P~~~~l 461 (512)
..+.....--+..++. - ++.+.+..|..........+.+.+++.|. +....+.+|++...+.+-++|.++++
T Consensus 299 SFlgv~lg~~~~~~~~-----~--~~~~~~~~r~~~~~~~~~~~~i~~l~~~~~~~~~~~~~~~~~~~iga~i~~~ll~~ 371 (415)
T COG0814 299 SFLGVYLGLFEGLADL-----F--KKSNSKPGRKKTGLLTFLPPLIFALLYPWGFAIALGYAGGLIATIGAPIIPALLFI 371 (415)
T ss_pred HHhCchhhHHHhhhHH-----H--HhccCcccchhhhhhhHHHHHHHHHHHHHHHHHHhHhHHHHHHHHHHHHHHHHHHH
Confidence 5443221110001110 0 11122233555566666778888888885 88889999999999999999999999
Q ss_pred hhccCC--CchhHHHHH-HHHHHHHHHHHHHHHHHHHH
Q 010376 462 AQKKIG--RGTTRWLGL-QILNVSCFFITLVAAIGSVA 496 (512)
Q Consensus 462 ~~~~~~--~~~~~~~~~-~~~~~~~~~~~~~g~~~si~ 496 (512)
+-++.. ....+.+.. .....+.+++|+......+.
T Consensus 372 ~p~~~~~~~~~~~~~~g~~~~~~~v~~~Gi~~~~~~~~ 409 (415)
T COG0814 372 KPRKLIYKLPALKVYGGNFLLLLLVLLFGILVILSPFL 409 (415)
T ss_pred HHHHhcCCCCceeecCCCchhHHHHHHHHHHHHHHHHH
Confidence 964432 222222222 23556666666555544443
No 100
>PF05805 L6_membrane: L6 membrane protein; InterPro: IPR008661 This family consists of several eukaryotic L6 membrane proteins. L6, IL-TMP, and TM4SF5 are cell surface proteins predicted to have four transmembrane domains. Previous sequence analysis led to their assignment as members of the tetraspanin superfamily it has now been found that that they are not significantly related to genuine tetraspanins, but instead constitute their own L6 family []. Several members of this family have been implicated in Homo sapiens cancer [, ].; GO: 0016021 integral to membrane
Probab=71.53 E-value=24 Score=31.77 Aligned_cols=81 Identities=14% Similarity=-0.006 Sum_probs=50.8
Q ss_pred HHHHHHHHHHHHhccch----------HHHHHHhhhhhhhhhhhhhhhhhhhhhccCCC----------chhHHHHHHHH
Q 010376 420 TLFVVLTTLISMLLPFF----------NDVVGILGAMGFWPLTVYFPIEMYKAQKKIGR----------GTTRWLGLQIL 479 (512)
Q Consensus 420 ~~~~~~~~~ia~~vp~~----------~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~----------~~~~~~~~~~~ 479 (512)
++++.+..=+.+++|+- +.-.-+.|++.|+.+..++|+...+...++.- .|.+.....+.
T Consensus 17 Lal~~iiaNilL~FP~g~~~~~~~~~is~~vw~f~Gi~GgGlmvl~pa~~~l~~~~~~cCgccg~~~c~~r~~M~~Sil~ 96 (195)
T PF05805_consen 17 LALLCIIANILLFFPNGEVTYLSENHISCEVWYFGGIIGGGLMVLLPAIVFLAAGKRDCCGCCGNECCGNRCGMFLSILF 96 (195)
T ss_pred HHHHHHHHHHheeccCCeeeeeccCCcchhheecCccccchHHHHHHHHHHHHhCCCcccccccCcccccccchHHHHHH
Confidence 33333333333677863 44666788999999999999999999887521 12233334444
Q ss_pred HHHHHHHHHHHHHHHHHHHHH
Q 010376 480 NVSCFFITLVAAIGSVAGVVL 500 (512)
Q Consensus 480 ~~~~~~~~~~g~~~si~~i~~ 500 (512)
.+++++-+++.+..|..++.+
T Consensus 97 a~igi~Ga~Yc~ivS~~aL~~ 117 (195)
T PF05805_consen 97 AAIGILGAGYCFIVSGLALSE 117 (195)
T ss_pred HHHHHHHHHHHHHHHHHHhhh
Confidence 566666666666666666553
No 101
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=69.62 E-value=1.4e+02 Score=30.81 Aligned_cols=57 Identities=9% Similarity=0.113 Sum_probs=43.0
Q ss_pred HhhhcCCCCCCcccccHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 010376 115 QCYRSGDPVTGQRNYTYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIK 174 (512)
Q Consensus 115 ~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 174 (512)
+.+.+....+|+ +..++|++-+.||.++...+..=+..+++=+.-.+..+-.++-+.
T Consensus 78 ~LaARLGvVTG~---hLAe~Cr~~Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~ 134 (503)
T KOG1291|consen 78 RLAARLGVVTGK---HLAEICREEYPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILS 134 (503)
T ss_pred HHHHHHcccccH---HHHHHHHHHccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHh
Confidence 333344445664 899999999999999988888777778888887777777776665
No 102
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=65.48 E-value=1.6e+02 Score=29.93 Aligned_cols=97 Identities=14% Similarity=0.096 Sum_probs=53.1
Q ss_pred HHHHhhhhhhhhhHHHHHHHHhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhCCcceee
Q 010376 69 SHIITAVIGSGVLSLAWAIAQLG--WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLGGKKVIF 146 (512)
Q Consensus 69 ~~li~~~iG~GiL~lP~af~~~G--~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G~~~~~~ 146 (512)
+.+..+-+|.|-++ -+ .++| +...+++.++.+.+..+. +-+...+....+|+ +-.+++++.++|+.++.
T Consensus 11 ~lva~a~idPG~i~-t~--~~aGa~fGy~LLW~llls~~~~~~---~Q~~aaRlg~vTg~---~l~~~~r~~~~~~~~~~ 81 (390)
T TIGR01197 11 FLMSIAYIDPGNYS-TD--LQAGAAAGYKLLWVLLLSNIMALL---LQRLCARLGVVTGL---DLAEVCREHYPKVPRIT 81 (390)
T ss_pred HHHHHHhcCchHHH-HH--HHHHHHhCHHHHHHHHHHHHHHHH---HHHHHHHheeecCC---CHHHHHHHHCCCchHHH
Confidence 33445556766665 12 2333 222344444444433333 33322222323443 79999999999987776
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 010376 147 CGLIQYLNLFGVAIGYTIAASVSMMAIK 174 (512)
Q Consensus 147 ~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 174 (512)
..+...+...++.++-+...+..++-++
T Consensus 82 ~~~~~~l~ii~~~~~e~~G~a~al~ll~ 109 (390)
T TIGR01197 82 LWILAELAIIATDMAEVIGTAIALNLLS 109 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 6655555556666666666666666554
No 103
>PF02028 BCCT: BCCT family transporter; InterPro: IPR000060 These prokaryotic transport proteins belong to a family known as BCCT (for Betaine / Carnitine / Choline Transporters) and are specific for compounds containing a quaternary nitrogen atom. The BCCT proteins contain 12 transmembrane regions and are energized by proton symport. They contain a conserved region with four tryptophans in their central region [].; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane; PDB: 2WSX_B 3HFX_A 2WSW_A 4DOJ_B 2WIT_C 4AIN_A 3P03_B.
Probab=61.50 E-value=2.2e+02 Score=30.01 Aligned_cols=97 Identities=10% Similarity=-0.063 Sum_probs=48.2
Q ss_pred HHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHHhhccCC
Q 010376 131 YMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEVLFSQIP 210 (512)
Q Consensus 131 y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~pl~~~~ 210 (512)
|.-++++.-| +.+.++|+...+...+....-+-....++..-++... ..+ + +..-+..+++...+++.++...
T Consensus 164 ~pl~g~~~~g-~~g~~ID~l~i~a~~~GvatslGlg~~qi~~gl~~~~-Gi~--~---~~~~~~~ii~~~~~i~~~S~~~ 236 (485)
T PF02028_consen 164 YPLLGDRING-PLGKIIDILAIFATIFGVATSLGLGVPQISAGLSSLF-GIP--N---TFGLQIIIIIVITVIFTISAVS 236 (485)
T ss_dssp HHHHHHHHHS-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC-TSS--S---THHHHHHHHHHHHHHHHHHHHT
T ss_pred hhhcCCcccC-cchhhhHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHc-CCC--C---chHHHHHHHHHHHHHHHHHHHH
Confidence 4444444333 3456677766666666555555555555555544321 000 0 1111111222333444555555
Q ss_pred Cc-chhhHHHHHHHHHHHHHHHHHH
Q 010376 211 DF-DQVWWLSIVAAIMSFTYSTAGL 234 (512)
Q Consensus 211 ~l-~~l~~~s~~~~~~~~~~~~iii 234 (512)
.+ |.+|+.|.+.+.+.+...+.+.
T Consensus 237 Gl~kGIk~LS~~n~~l~~~ll~~vl 261 (485)
T PF02028_consen 237 GLDKGIKRLSNINVYLAFALLLFVL 261 (485)
T ss_dssp TTHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 66 4488888888877764444433
No 104
>KOG4812 consensus Golgi-associated protein/Nedd4 WW domain-binding protein [General function prediction only]
Probab=60.39 E-value=30 Score=31.96 Aligned_cols=79 Identities=10% Similarity=0.064 Sum_probs=44.9
Q ss_pred HHHHHHHHHHHHhccchHHHHHH---------hhhhhhhhhhhhhhhhhhhhhccCC--C---chhHHHHHHHHHHHHHH
Q 010376 420 TLFVVLTTLISMLLPFFNDVVGI---------LGAMGFWPLTVYFPIEMYKAQKKIG--R---GTTRWLGLQILNVSCFF 485 (512)
Q Consensus 420 ~~~~~~~~~ia~~vp~~~~i~~l---------~Ga~~~~~l~fi~P~~~~l~~~~~~--~---~~~~~~~~~~~~~~~~~ 485 (512)
-..++..+++|..++.++-++.+ -||++|..+.++= |..+-+.. . .....|+.|+++++|++
T Consensus 160 d~~F~~af~vAflFnwIGFlltycl~tT~agRYGA~~GfGLsLik----wilIv~~sd~f~~y~n~q~wLwwi~~vlG~l 235 (262)
T KOG4812|consen 160 DGIFMWAFIVAFLFNWIGFLLTYCLTTTHAGRYGAISGFGLSLIK----WILIVRFSDDFESYFNGQYWLWWIFLVLGLL 235 (262)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHhhHhhhhhhhhccchhhhe----eeEEeecccccccccccchHHHHHHHHHHHH
Confidence 34445555666666666555544 4788888888775 33332211 1 12234566777788888
Q ss_pred HHHHHH--HHHHHHHHHhc
Q 010376 486 ITLVAA--IGSVAGVVLDL 502 (512)
Q Consensus 486 ~~~~g~--~~si~~i~~~~ 502 (512)
+.+-++ |..|+..-+.+
T Consensus 236 l~lr~~i~YikVrrm~~~~ 254 (262)
T KOG4812|consen 236 LFLRGFINYIKVRRMEEKY 254 (262)
T ss_pred HHHHHHHhHHHHhhHHHHH
Confidence 877776 34555544443
No 105
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=56.78 E-value=2.7e+02 Score=29.56 Aligned_cols=46 Identities=24% Similarity=0.241 Sum_probs=40.2
Q ss_pred cHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 010376 130 TYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKR 175 (512)
Q Consensus 130 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 175 (512)
...++-....||++...+.....+..+..+++-++..+.....+.+
T Consensus 326 p~~~i~~~~lg~k~~v~~~~l~ii~~f~~gi~s~~a~SR~v~afaR 371 (550)
T KOG1289|consen 326 PIVQIYYQALGKKGAVFLLSLIIIALFFMGISSLTASSRLVYAFAR 371 (550)
T ss_pred hHHHHHHHhcCCCceEehhHHHHHHHHHhhHHHHHHHHHHHhhhhc
Confidence 6777778889999999898899999999999999999988887764
No 106
>PRK04949 putative sulfate transport protein CysZ; Validated
Probab=50.43 E-value=1.9e+02 Score=27.43 Aligned_cols=40 Identities=8% Similarity=0.154 Sum_probs=28.0
Q ss_pred HhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCC
Q 010376 292 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 336 (512)
Q Consensus 292 ~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~ 336 (512)
..-.+.+++| ++++.+.+...+..++|...-..++..+++
T Consensus 15 ~~g~~~l~~P-----~lr~~~liPl~inllLf~~~l~~~~~~~~~ 54 (251)
T PRK04949 15 IQGWKLILQP-----GLRRFVILPLLVNILLFGGAFWWLFTQLDA 54 (251)
T ss_pred HHHHHHhcCc-----chHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3334566676 688889999999888888775555555553
No 107
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=50.03 E-value=95 Score=31.83 Aligned_cols=83 Identities=18% Similarity=0.086 Sum_probs=53.8
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCccccc-HHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhh
Q 010376 91 GWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYT-YMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVS 169 (512)
Q Consensus 91 G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~-y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~ 169 (512)
|++..+-.++=.-++|..|+..+.-.-..... .+....+ ..+.-+..+|.++.+++.+++.+..|.+.+++....-..
T Consensus 255 Gl~~~~~vFiDTiiVCt~TalvIl~tG~~~~~-~~~~g~~l~~~Af~~~~g~~g~~~v~i~l~lFafTTilg~~~yge~~ 333 (416)
T PF01235_consen 255 GLVQMFEVFIDTIIVCTITALVILVTGVWSWG-SGLEGAALTQAAFSTVLGSWGPYFVAIALFLFAFTTILGWYYYGEKC 333 (416)
T ss_pred eeeeeehHhHHHHHHHHHHHHHhhccCCCCCC-CcchHHHHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55443444444555666777666654321111 1111112 233334458899999999999999999999999999999
Q ss_pred HHHhh
Q 010376 170 MMAIK 174 (512)
Q Consensus 170 l~~~~ 174 (512)
+..++
T Consensus 334 ~~yl~ 338 (416)
T PF01235_consen 334 AEYLF 338 (416)
T ss_pred HHHHc
Confidence 99887
No 108
>PRK13183 psbN photosystem II reaction center protein N; Provisional
Probab=49.09 E-value=19 Score=23.85 Aligned_cols=30 Identities=30% Similarity=0.386 Sum_probs=23.5
Q ss_pred hhhHHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 308 MKKATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 308 ~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
+..+...++.+.+++..++|..-|.+||..
T Consensus 4 me~A~~~~i~i~~lL~~~TgyaiYtaFGpp 33 (46)
T PRK13183 4 MSPALSLAITILAILLALTGFGIYTAFGPP 33 (46)
T ss_pred cchhHHHHHHHHHHHHHHhhheeeeccCCc
Confidence 444567777888888888888889999964
No 109
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=47.66 E-value=3.7e+02 Score=28.53 Aligned_cols=99 Identities=21% Similarity=0.167 Sum_probs=51.4
Q ss_pred HHHHHHHHHhhhhhhh-hhHHHHHHH-HhChhHHHHHHHHHHHH----HHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 010376 64 FWTTSSHIITAVIGSG-VLSLAWAIA-QLGWVAGPTVLILFALV----NLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 64 ~~~a~~~li~~~iG~G-iL~lP~af~-~~G~~~gii~lii~~~~----~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
..+-+...++..+|.| +.-.|+-.. +.|.. -++..+++.++ ..+.=..+.+-.+.. .. .-|.+++..
T Consensus 7 ~~~~~l~~~g~~vglgn~wrfp~~~~~~gG~~-Fli~y~~~~~~~giP~~~lE~~lGq~~~~~----~~--~~~~~~~p~ 79 (523)
T PF00209_consen 7 KIGFILACIGYAVGLGNIWRFPYLCYENGGGA-FLIPYLLFLLLVGIPLLYLELALGQYSRSG----PI--GAWKRLCPI 79 (523)
T ss_dssp HHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHTT----SH--HHS-HHHHH
T ss_pred cccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccc----cc--ccccccccc
Confidence 4567788889999988 788999955 44533 23333332222 222223333333321 11 245555543
Q ss_pred hhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 010376 138 NLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKR 175 (512)
Q Consensus 138 ~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 175 (512)
.=| +.+..++..+..++-|.+..+..+..+..
T Consensus 80 ~~g------iG~~~~~~~~~~~~yy~vi~~w~l~Y~~~ 111 (523)
T PF00209_consen 80 FKG------IGYAMVLISFLIAIYYSVIVAWALYYFFQ 111 (523)
T ss_dssp HHT------HHHH---HHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccc------ccccccccccccccccccccccccccccc
Confidence 211 45555566666777777777766666553
No 110
>KOG3659 consensus Sodium-neurotransmitter symporter [Signal transduction mechanisms]
Probab=46.99 E-value=4e+02 Score=28.67 Aligned_cols=84 Identities=17% Similarity=0.133 Sum_probs=44.0
Q ss_pred cHHHHHHHHHhhhhhhhh-hHHHHH-HHHhCh---hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHH
Q 010376 63 NFWTTSSHIITAVIGSGV-LSLAWA-IAQLGW---VAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKA 137 (512)
Q Consensus 63 s~~~a~~~li~~~iG~Gi-L~lP~a-f~~~G~---~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~ 137 (512)
+-++....+++..++.|= --.||- +.+.|. ++=++++++.|+=-.|-=+.+.+-++... ..-+..++-.
T Consensus 83 ~K~eflLa~vgfaV~lgnvWrFpYlC~~nGGgaFlvpY~imli~~GvPLfymELaLGQ~~r~g~------~gvw~ri~P~ 156 (629)
T KOG3659|consen 83 SKTEFLLAVVGFAVDLGNVWRFPYLCYKNGGGAFLVPYTIMLIVGGVPLFYMELALGQYHRQGC------IGVWRRIAPA 156 (629)
T ss_pred hHHHHHHHHHHHhhcccccceeeheeeeCCCEeEhHHHHHHHHHhccHHHHHHHHHHHHhcccc------hhHHHHhCHH
Confidence 456677778888888664 557887 666665 23334444444443443334444433211 1245566655
Q ss_pred hhCCcceeehHHHHHH
Q 010376 138 NLGGKKVIFCGLIQYL 153 (512)
Q Consensus 138 ~~G~~~~~~~~~~~~~ 153 (512)
+|..|.-++.++...
T Consensus 157 -l~Gigy~i~~i~~~~ 171 (629)
T KOG3659|consen 157 -LKGIGYAICLIAFFV 171 (629)
T ss_pred -hcCCchhhhHHHHHH
Confidence 555554444444333
No 111
>COG5336 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=45.39 E-value=63 Score=25.94 Aligned_cols=43 Identities=21% Similarity=0.128 Sum_probs=28.1
Q ss_pred HHHHHHHHhhhhhhhhhHHHHHHHHhChhHHHHHHHHHHHHHHH
Q 010376 65 WTTSSHIITAVIGSGVLSLAWAIAQLGWVAGPTVLILFALVNLY 108 (512)
Q Consensus 65 ~~a~~~li~~~iG~GiL~lP~af~~~G~~~gii~lii~~~~~~~ 108 (512)
.-+.=.+.+.++|+++=-+---|..+..+ |+++++++++....
T Consensus 47 klssefIsGilVGa~iG~llD~~agTsPw-glIv~lllGf~AG~ 89 (116)
T COG5336 47 KLSSEFISGILVGAGIGWLLDKFAGTSPW-GLIVFLLLGFGAGV 89 (116)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhcCCCcH-HHHHHHHHHHHHHH
Confidence 33455566888888875565567777766 57777777665443
No 112
>COG4709 Predicted membrane protein [Function unknown]
Probab=45.31 E-value=1.5e+02 Score=26.51 Aligned_cols=16 Identities=6% Similarity=0.148 Sum_probs=9.6
Q ss_pred CCCCCcccchhhhhcc
Q 010376 6 RTMPSRIHHGAVEERH 21 (512)
Q Consensus 6 ~~~~~~~~~~~~~~~~ 21 (512)
++.|.+..++.|.|.+
T Consensus 15 ~~Lp~~~r~e~m~dye 30 (195)
T COG4709 15 EGLPREERREIMYDYE 30 (195)
T ss_pred HhCCHHHHHHHHHHHH
Confidence 4556666666666543
No 113
>PF02468 PsbN: Photosystem II reaction centre N protein (psbN); InterPro: IPR003398 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbN found in PSII. PsbN may have a role in PSII stability, however its actual function unknown. PsbN does not appear to be essential for photoautotrophic growth or normal PSII function.; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane
Probab=42.49 E-value=27 Score=22.96 Aligned_cols=27 Identities=30% Similarity=0.507 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 311 ATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 311 ~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
+...+..+..++-.++|..-|.+||..
T Consensus 4 a~~~~i~i~~~lv~~Tgy~iYtaFGpp 30 (43)
T PF02468_consen 4 ATVLAIFISCLLVSITGYAIYTAFGPP 30 (43)
T ss_pred eeeHHHHHHHHHHHHHhhhhhheeCCC
Confidence 345677778888888888889999953
No 114
>CHL00020 psbN photosystem II protein N
Probab=40.24 E-value=23 Score=23.15 Aligned_cols=27 Identities=33% Similarity=0.514 Sum_probs=21.1
Q ss_pred HHHHHHHHHHHHHHHHHhHhhhhcCCC
Q 010376 311 ATLFSIIVTTTFYLLCGCMGYAAFGDL 337 (512)
Q Consensus 311 ~i~~s~~i~~~~Y~~~g~~gy~~fg~~ 337 (512)
+...++.+.+++..++|..-|.+||..
T Consensus 4 A~~~~i~i~~ll~~~Tgy~iYtaFGpp 30 (43)
T CHL00020 4 ATLVAIFISGLLVSFTGYALYTAFGQP 30 (43)
T ss_pred hhhHHHHHHHHHHHhhheeeeeccCCc
Confidence 456677778888888888888899964
No 115
>PRK12768 CysZ-like protein; Reviewed
Probab=35.68 E-value=3.8e+02 Score=25.20 Aligned_cols=28 Identities=14% Similarity=0.103 Sum_probs=20.5
Q ss_pred HhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHH
Q 010376 295 QDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCG 327 (512)
Q Consensus 295 ~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g 327 (512)
..++.|| ++++++..+...+..++...+
T Consensus 9 ~~ql~~~-----~~r~vl~~~~~lt~~l~~~~~ 36 (240)
T PRK12768 9 LARLLSP-----PMRSVFWKVLGLTLLLLVVLW 36 (240)
T ss_pred HHHhCCH-----HHHHHHHHHHHHHHHHHHHHH
Confidence 4566777 588888888888777777654
No 116
>PF11085 YqhR: Conserved membrane protein YqhR; InterPro: IPR024563 This family of proteins is conserved in the Bacillaceae family of the Firmicutes. Their function is not known.
Probab=35.66 E-value=1.5e+02 Score=26.04 Aligned_cols=20 Identities=15% Similarity=0.446 Sum_probs=14.2
Q ss_pred CCCcchhhHHHHHHHHHHHH
Q 010376 209 IPDFDQVWWLSIVAAIMSFT 228 (512)
Q Consensus 209 ~~~l~~l~~~s~~~~~~~~~ 228 (512)
++.+.++.+-+.+..+|...
T Consensus 123 ~~~~~~l~~nTiiT~~Ciyi 142 (173)
T PF11085_consen 123 IKPVTELDWNTIITTLCIYI 142 (173)
T ss_pred ChhhhhCchhHHHHHHHHHH
Confidence 55677777777777777653
No 117
>KOG2466 consensus Uridine permease/thiamine transporter/allantoin transport [Nucleotide transport and metabolism; Coenzyme transport and metabolism]
Probab=35.33 E-value=5.5e+02 Score=26.96 Aligned_cols=265 Identities=13% Similarity=0.133 Sum_probs=119.3
Q ss_pred CcccccccHHHHHHHHHhhhhhhhhhHHHHHHHHhCh--hHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHH
Q 010376 56 GRLKRTGNFWTTSSHIITAVIGSGVLSLAWAIAQLGW--VAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMD 133 (512)
Q Consensus 56 ~~~~~~~s~~~a~~~li~~~iG~GiL~lP~af~~~G~--~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~ 133 (512)
.+.+|+=|+++-+..=....++.+..-+.-+--+.|+ .-+++...+ -..++...++-..+- . .... .+++-
T Consensus 50 ~~~~Rtws~~~~~~fW~~~~fnv~Tw~ia~s~l~lGLswwq~~~tv~v---G~~~~~~f~~lns~~-G--~~yh-IsFpv 122 (572)
T KOG2466|consen 50 PPSRRTWSWWNYIAFWLADSFNVNTWMIAGSALELGLSWWQTWITVWV---GYLFTAIFLVLNSRP-G--SDYH-ISFPV 122 (572)
T ss_pred CcccccccHHHHHHHHHhccccccceeehhhHHhccCCHHHHHHHHHH---HHHHHHHHHHHccCC-C--cccc-cceee
Confidence 4456666788777777777777777777666667774 333332222 222222222222111 1 1111 36666
Q ss_pred HHHHhhCCccee---ehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCc---ccccchhhH--HHHHHHHh
Q 010376 134 AVKANLGGKKVI---FCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPC---HMSSNGYMI--TFGIIEVL 205 (512)
Q Consensus 134 l~~~~~G~~~~~---~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~---~~~~~~~~~--i~~~~~~p 205 (512)
..|..||-++.. +..+.+....+|+. .-+.++.++.++++...+.+.-.+.. ......++. ++=++.+|
T Consensus 123 ~sR~sFGiygS~~pIi~R~vma~vwYg~~---awiGgecV~lmL~si~~~~~hipntl~~~~~tt~e~i~FfIFwv~s~~ 199 (572)
T KOG2466|consen 123 LSRSSFGIYGSLWPIINRVVMACVWYGVN---AWIGGECVQLMLKSIFKSFSHIPNTLGKPGTTTYEFIGFFIFWVASLP 199 (572)
T ss_pred eeeeehhhhHhHHHHHHHHHHHHhhhhhh---hhhhhhhHHHHHHHHhhhhhcCccccCCCCCchHHHHHHHHHHHHhhh
Confidence 777777766533 33333333334322 23344555555544322211000100 112222222 23334445
Q ss_pred hccCCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHHHHHHh
Q 010376 206 FSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGAIAFAY 285 (512)
Q Consensus 206 l~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~faf 285 (512)
..+. ...++|.+-....+.+....+..+ ++...+.++...-... +.+++.....|-+..++...+=.|
T Consensus 200 ~~~~-~p~~ir~lf~~ka~~t~fA~~g~L---Iw~l~kAhG~G~l~~~--------~st~~gs~~aWa~~~~i~~~~~~f 267 (572)
T KOG2466|consen 200 FYWF-PPYKIRHLFTWKAVLTPFAAFGFL---IWLLKKAHGLGHLFDS--------KSTVSGSAHAWAFVRSIMSCIANF 267 (572)
T ss_pred eeec-cHHHhhhHHHHHHhhhHHHHHHHH---HHHHHhcCCccccccC--------CCcccccchhHHHHHHHHHHHhcc
Confidence 4444 456666655555555443333333 2222222211000000 011333334454444444333333
Q ss_pred c-cchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHH----HHHHHhHhhhhcCCCC--Cccccccc
Q 010376 286 S-FSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTF----YLLCGCMGYAAFGDLA--PNNLLTGF 346 (512)
Q Consensus 286 ~-~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~----Y~~~g~~gy~~fg~~~--~~~il~~~ 346 (512)
. ...|.|...+--|+|. .....-.+++.+.+.+ =++.+..++..||.+. +-++++++
T Consensus 268 stl~~N~pDFsRF~ksp~----a~~~~Ql~alp~~~~l~~liGVlv~sa~~~iYG~~~W~Pldil~~~ 331 (572)
T KOG2466|consen 268 STLIVNAPDFSRFAKSPN----AIWWGQLIALPLPFGLTPLIGVLVTSASKIIYGTNYWSPLDILNQW 331 (572)
T ss_pred chhhccCchhHhhcCCCC----ccchhhhhhhhhhhhhhhheeeEehhhhhhhhcccccCHHHHHHHH
Confidence 2 3456788888888883 3333333444444444 4445556778899763 33445443
No 118
>COG3763 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=33.29 E-value=1.2e+02 Score=22.25 Aligned_cols=31 Identities=19% Similarity=0.216 Sum_probs=23.5
Q ss_pred HHHHHHHHHHHH-HHHHHHHHHHHhcccccCC
Q 010376 478 ILNVSCFFITLV-AAIGSVAGVVLDLKTYKPF 508 (512)
Q Consensus 478 ~~~~~~~~~~~~-g~~~si~~i~~~~~~~~~f 508 (512)
++++++++.|++ |++-|-+-+...++.+.|-
T Consensus 8 l~ivl~ll~G~~~G~fiark~~~k~lk~NPpi 39 (71)
T COG3763 8 LLIVLALLAGLIGGFFIARKQMKKQLKDNPPI 39 (71)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhCCCC
Confidence 556777777777 4677888888888887764
No 119
>PLN00151 potassium transporter; Provisional
Probab=32.75 E-value=7.7e+02 Score=27.84 Aligned_cols=44 Identities=9% Similarity=0.073 Sum_probs=23.4
Q ss_pred HHHHHHHHHHHHHHhccchHHHHHHhhhhhhhhhhhhhhhhhhhh
Q 010376 418 WRTLFVVLTTLISMLLPFFNDVVGILGAMGFWPLTVYFPIEMYKA 462 (512)
Q Consensus 418 ~~~~~~~~~~~ia~~vp~~~~i~~l~Ga~~~~~l~fi~P~~~~l~ 462 (512)
+..++.+.|..+.+.+.+-..+-+--| ++....+++==+++.+.
T Consensus 474 vNw~Lmv~~i~v~l~F~~s~~l~~AYG-iAV~~vM~iTT~L~~lV 517 (852)
T PLN00151 474 INWFLLVMCLVVVCSFRSITDIGNAYG-IAEVGVMMVSTILVTLV 517 (852)
T ss_pred HHHHHHHHHHhheeeecCHHHHHHHhh-hhhhhhhhHHHHHHHHH
Confidence 455555666666666776666555555 33333344434444443
No 120
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=32.60 E-value=5.6e+02 Score=26.26 Aligned_cols=78 Identities=10% Similarity=0.044 Sum_probs=47.8
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHHHH-HhC--hhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHHHHHhhC
Q 010376 64 FWTTSSHIITAVIGSGVLSLAWAIA-QLG--WVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDAVKANLG 140 (512)
Q Consensus 64 ~~~a~~~li~~~iG~GiL~lP~af~-~~G--~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l~~~~~G 140 (512)
.+..-+.+..-..|+|=+-.|-..- ++| ++.+.+.+++.++.-=.-...-.-- .| .+|++++++ .|
T Consensus 7 ~~~~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~-------~g---~~~~~l~~~-i~ 75 (431)
T COG1114 7 IIALGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVAL-------YG---GGVESLATR-IG 75 (431)
T ss_pred HHHHHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhc-------cC---CCHHHHhhh-cc
Confidence 4566777788889999999887754 334 5556666666655332222211111 11 279999988 68
Q ss_pred CcceeehHHHHH
Q 010376 141 GKKVIFCGLIQY 152 (512)
Q Consensus 141 ~~~~~~~~~~~~ 152 (512)
||.+.+......
T Consensus 76 ~~fg~~f~~~iy 87 (431)
T COG1114 76 PWFGVLFAIAIY 87 (431)
T ss_pred chHHHHHHHHHH
Confidence 887766544443
No 121
>PHA02680 ORF090 IMV phosphorylated membrane protein; Provisional
Probab=31.38 E-value=1.7e+02 Score=22.43 Aligned_cols=62 Identities=8% Similarity=0.139 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHhccchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCC
Q 010376 274 SLQALGAIAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAP 339 (512)
Q Consensus 274 ~~~~~~~~~faf~~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~ 339 (512)
.....|+.+.+-.|........+.-.+|. .+..|++.+-. +...+-++.|++.|..||...+
T Consensus 13 ~vli~GIiLL~~ACIFAfidFSK~~s~~~---~~~wRalSii~-FIlG~vl~lGilifs~y~~C~~ 74 (91)
T PHA02680 13 GVLICGVLLLTAACVFAFVDFSKNTSNVT---DYVWRALSVTC-FIVGAVLLLGLFVFSMYRKCSG 74 (91)
T ss_pred HHHHHHHHHHHHHHHHhhhhhhccCCCCc---chhHHHHHHHH-HHHHHHHHHHHHHHHHhcccCC
Confidence 33456666666777777777777776665 34444443322 2333456778999999984443
No 122
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=30.83 E-value=5.7e+02 Score=26.40 Aligned_cols=84 Identities=19% Similarity=0.165 Sum_probs=51.3
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhcCCCCCCcccccHHHH-HHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhh
Q 010376 91 GWVAGPTVLILFALVNLYTANLLSQCYRSGDPVTGQRNYTYMDA-VKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVS 169 (512)
Q Consensus 91 G~~~gii~lii~~~~~~~s~~~l~~~~~~~~~~~~~~~~~y~~l-~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~ 169 (512)
|++..+-.++=.-++|..|+..+.-.-...++ .+.+....... -+..+|.++.+++.+++.+..+.+.+++.......
T Consensus 282 Gl~~~~~vfiDTivvCt~Talvil~tg~~~~~-~~~~g~~lt~~af~~~~g~~g~~~v~i~~~lFaftTii~~~yyge~~ 360 (425)
T TIGR00835 282 GLVQMLGVFIDTMIVCTATALVILLSGVWNNG-EGLSGAQLTQQALSYGLGSFGAVFVAVALFLFAFSTIIGWYYYGEKN 360 (425)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHcCccCCC-CCCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55433333333455666666655543221101 01111133332 23347889999999999999999999999999999
Q ss_pred HHHhhh
Q 010376 170 MMAIKR 175 (512)
Q Consensus 170 l~~~~~ 175 (512)
+..+++
T Consensus 361 ~~yl~~ 366 (425)
T TIGR00835 361 AEFLKG 366 (425)
T ss_pred HHHhcC
Confidence 988763
No 123
>PRK11281 hypothetical protein; Provisional
Probab=30.01 E-value=8e+02 Score=28.97 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=24.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHhhhhcCC
Q 010376 306 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 336 (512)
Q Consensus 306 ~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~ 336 (512)
.+-++++.+++..+.-..+.+..+||+.+..
T Consensus 540 ~~T~~al~~t~l~alp~~l~~~~~g~~~~~~ 570 (1113)
T PRK11281 540 LHTPKAILITLLLALPVTLIFLAVGLILLTD 570 (1113)
T ss_pred cccHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 5667888888888888888888889877763
No 124
>cd08766 Cyt_b561_ACYB-1_like Plant cytochrome b(561), including the carbon monoxide oxygenase ACYB-1. Cytochrome b(561), as found in plants, similar to the Arabidopsis thaliana ACYB-1 gene product, a cytochrome b561 isoform localized to the tonoplast. This protein might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), and might be capable of trans-membrane electron transport from intracellular ascorbate to extracellular ferric chelates. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=29.40 E-value=3.1e+02 Score=23.46 Aligned_cols=68 Identities=12% Similarity=0.107 Sum_probs=46.9
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhhccch
Q 010376 306 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPL 377 (512)
Q Consensus 306 ~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 377 (512)
|+.++.+-..+-...++..++|+..-..+-++.+ ..|+. +-.+|+-.+.-+++.++.+..+..+.+|.
T Consensus 37 k~~~k~iH~~l~~la~~~~vvGl~avf~~~~~~~---~~~~~-SlHSwlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (144)
T cd08766 37 REVQKAVHLTLHLVALVLGIVGIYAAFKFHNEVG---IPNLY-SLHSWLGIGTISLFGLQWLFGFVTFWFPG 104 (144)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHhcccC---ccccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 6677778888888888888888866555554432 22221 23688877777888888888876666664
No 125
>PF11286 DUF3087: Protein of unknown function (DUF3087); InterPro: IPR021438 This family of proteins with unknown function appears to be restricted to Gammaproteobacteria.
Probab=29.10 E-value=1.8e+02 Score=25.55 Aligned_cols=47 Identities=13% Similarity=0.110 Sum_probs=34.9
Q ss_pred CCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCccccccc
Q 010376 300 SPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGF 346 (512)
Q Consensus 300 ~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~ 346 (512)
||...||+.++++......-.++=+.+|..-...||+...+|+-.|+
T Consensus 7 dk~~YRk~~n~v~~~~v~~lai~sl~~s~llI~lFg~~~~~nf~~Nl 53 (165)
T PF11286_consen 7 DKERYRKHLNRVIVACVASLAILSLAFSQLLIALFGGESGGNFHWNL 53 (165)
T ss_pred CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCCCCceeeeH
Confidence 44445677777777777767777778888888899987777777764
No 126
>cd08765 Cyt_b561_CYBRD1 Vertebrate cytochrome b(561), CYBRD1 gene product. Duodenal cytochrome b or ferric-chelate reductase 3, a cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. This protein is expressed at the brush border of duodenal enterocytes and may play a role in the uptake of dietary Fe(3+), facilitating its transport into the mucosal cells. It may also be involved in the recycling of extracellular ascorbate in erythrocyte membranes, and act as a ferrireductase in epithelial cells of the respiratory system. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-me
Probab=27.84 E-value=3.6e+02 Score=23.36 Aligned_cols=68 Identities=13% Similarity=0.092 Sum_probs=49.6
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhhccch
Q 010376 306 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPL 377 (512)
Q Consensus 306 ~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 377 (512)
|+.+|.+-..+-...++-.++|+..-..+-++.+- .|+- +-.+|+-.+.-+++.+|.+..+..+.+|.
T Consensus 44 k~~~k~iH~~L~~~a~~~~i~Gl~avf~~hn~~~~---~~fy-SlHSwlGl~t~~l~~lQ~~~Gf~~f~~P~ 111 (153)
T cd08765 44 KLLMKLIHAGLHILAFILAIISVVAVFVFHNAKNI---PNMY-SLHSWVGLAAVILYPLQLVLGISVYLLPV 111 (153)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHccccCC---Cccc-cHHHHHHHHHHHHHHHHHHHHHHHHHccC
Confidence 56777888888888888888888777777654322 2321 23688887888888999999988887774
No 127
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=27.08 E-value=7.2e+02 Score=25.76 Aligned_cols=82 Identities=20% Similarity=0.194 Sum_probs=55.2
Q ss_pred ChhHHHHHHHHHHHHHHHHHHHHHHhhhc--CCCCCCcccccHH-HHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHh
Q 010376 91 GWVAGPTVLILFALVNLYTANLLSQCYRS--GDPVTGQRNYTYM-DAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAAS 167 (512)
Q Consensus 91 G~~~gii~lii~~~~~~~s~~~l~~~~~~--~~~~~~~~~~~y~-~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~ 167 (512)
|++..+-.++=.-++|..|+..+.-.-.. .+...|. ... ..-+..+|.++..++.+.+.+..|.+.+++....-
T Consensus 299 Glv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~~~G~---~ltq~A~~~~~g~~G~~fv~i~l~lFafTTIlg~yyyge 375 (452)
T COG1115 299 GLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGGLSGA---ALTQAAFSSHLGSWGSYFVAIALFLFAFTTILGWYYYGE 375 (452)
T ss_pred hHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCCCchH---HHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55544444444566777777766665322 1111121 222 23345589999999999999999999999999999
Q ss_pred hhHHHhhh
Q 010376 168 VSMMAIKR 175 (512)
Q Consensus 168 ~~l~~~~~ 175 (512)
.+++.+..
T Consensus 376 ~~~~fl~~ 383 (452)
T COG1115 376 KNIEFLFG 383 (452)
T ss_pred HHHHHHhC
Confidence 99988773
No 128
>PF05915 DUF872: Eukaryotic protein of unknown function (DUF872); InterPro: IPR008590 This entry represents several uncharacterised eukaryotic transmembrane proteins. The function of this currently unknown.
Probab=25.17 E-value=3.7e+02 Score=22.04 Aligned_cols=23 Identities=4% Similarity=0.203 Sum_probs=11.8
Q ss_pred HHHHHHHHHhhhhhhhhhHHHHH
Q 010376 64 FWTTSSHIITAVIGSGVLSLAWA 86 (512)
Q Consensus 64 ~~~a~~~li~~~iG~GiL~lP~a 86 (512)
|..-...+.=.++|+..+.+...
T Consensus 41 wK~I~la~~Lli~G~~li~~g~l 63 (115)
T PF05915_consen 41 WKSIALAVFLLIFGTVLIIIGLL 63 (115)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHH
Confidence 44444444455556655555544
No 129
>TIGR00842 bcct choline/carnitine/betaine transport. properties inherent to their polypeptide chains.
Probab=24.19 E-value=6.8e+02 Score=26.08 Aligned_cols=46 Identities=9% Similarity=-0.109 Sum_probs=26.8
Q ss_pred ccHHHHHHHhhCCc----ceeehHHHHHHHHHHHHHHHHHHHhhhHHHhh
Q 010376 129 YTYMDAVKANLGGK----KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIK 174 (512)
Q Consensus 129 ~~y~~l~~~~~G~~----~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~ 174 (512)
...++..+-.+|++ .+.++|+..++...+....-+-....++..-+
T Consensus 120 ~~iss~~~pllG~~~~g~~g~~ID~l~v~ati~G~atsLGlg~~qi~~gl 169 (453)
T TIGR00842 120 LRLSSALVPLLGERVNGPIGKAIDIMALVATLFGVATSLGLGAPQINAGL 169 (453)
T ss_pred CchhhhhhcccCCcccCccHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 57888888888864 24456666555554444444444444444444
No 130
>KOG1619 consensus Cytochrome b [Energy production and conversion]
Probab=23.59 E-value=6.2e+02 Score=23.75 Aligned_cols=77 Identities=16% Similarity=0.128 Sum_probs=58.1
Q ss_pred HHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhh
Q 010376 294 IQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVF 373 (512)
Q Consensus 294 i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~ 373 (512)
+++--|+-+ |+.+|.+-..+=++.++-.++|+..-..+-+... ..||- +.++|+-..+-+++.+|.+..|--+
T Consensus 76 ~YR~~r~~~---k~~~KliH~~LH~~Alvl~i~gl~avf~~hn~~~---i~Nfy-SLHSWlGl~~v~ly~~Q~v~GF~tf 148 (245)
T KOG1619|consen 76 IYRVFRYTS---KKVSKLIHLGLHIIALVLAIIGLCAVFDSHNLVG---IANFY-SLHSWLGLCVVILYSLQWVFGFFTF 148 (245)
T ss_pred eeehhhhhh---HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcC---cccee-eHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444444433 8899999999999999999999999888887654 33331 2468988888888999999888777
Q ss_pred ccch
Q 010376 374 CQPL 377 (512)
Q Consensus 374 ~~p~ 377 (512)
.+|.
T Consensus 149 l~pg 152 (245)
T KOG1619|consen 149 LFPG 152 (245)
T ss_pred hcCC
Confidence 7654
No 131
>PRK03356 L-carnitine/gamma-butyrobetaine antiporter; Provisional
Probab=23.50 E-value=9e+02 Score=25.62 Aligned_cols=98 Identities=13% Similarity=-0.070 Sum_probs=47.5
Q ss_pred cHHHHHHHhhCCc-----ceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHHHH
Q 010376 130 TYMDAVKANLGGK-----KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGIIEV 204 (512)
Q Consensus 130 ~y~~l~~~~~G~~-----~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 204 (512)
..+...+-.+|++ .+.++|+..++...+....-+-+...+++.-++... ..+ + ....+..+++...+++
T Consensus 170 ~iss~~~pllG~~~~~g~~G~~IDil~v~atv~GvatSLGlg~~qi~~gl~~l~-Gi~--~---~~~~~~~ii~~i~~if 243 (504)
T PRK03356 170 RPSSTLVPLVGEKHAKGLFGTIVDNFYLVALIFAMGTSLGLATPLVTECMQWLF-GIP--H---TLQLDAIIITCWIILN 243 (504)
T ss_pred cHHHHHHHHcCCCcccCchHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHc-CCC--C---chHHHHHHHHHHHHHH
Confidence 6788888888842 245566666655555555555544455544443321 100 0 1111111122222334
Q ss_pred hhccCCCc-chhhHHHHHHHHHHHHHHHHH
Q 010376 205 LFSQIPDF-DQVWWLSIVAAIMSFTYSTAG 233 (512)
Q Consensus 205 pl~~~~~l-~~l~~~s~~~~~~~~~~~~ii 233 (512)
.++....+ |.+|+.|.+.....+...+.+
T Consensus 244 ~~S~~~Gl~kGIk~LS~~N~~la~~ll~~v 273 (504)
T PRK03356 244 AICVACGLQKGVRIASDVRSYLSFLMLGWV 273 (504)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 44443333 566777777776665443333
No 132
>PF05884 ZYG-11_interact: Interactor of ZYG-11; InterPro: IPR008574 This family consists of proteins of unknown function found in Caenorhabditis species.
Probab=23.35 E-value=3.3e+02 Score=26.35 Aligned_cols=42 Identities=21% Similarity=0.319 Sum_probs=29.6
Q ss_pred HHHHHHhc-cchHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCc
Q 010376 426 TTLISMLL-PFFNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRG 469 (512)
Q Consensus 426 ~~~ia~~v-p~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~ 469 (512)
.++-+.+. |-++.+++-.||...+ .+++|+..|+.+.++.+.
T Consensus 120 s~iG~YiLapl~~~i~~~~gAaila--~iviP~~~~y~ln~~~~s 162 (299)
T PF05884_consen 120 SFIGGYILAPLFGIIFGPFGAAILA--YIVIPLIAYYYLNKEDGS 162 (299)
T ss_pred HHHHHHHHHHHHHHHhcchhHHHHH--HHHHHHHHHhhcccccCc
Confidence 33444444 5688888888887766 789999999987665443
No 133
>PRK09928 choline transport protein BetT; Provisional
Probab=23.26 E-value=8.6e+02 Score=26.83 Aligned_cols=158 Identities=11% Similarity=0.017 Sum_probs=70.1
Q ss_pred HHHHHHHHHhhhhhhhhhHH----HHH-HHH--hCh-------hHHHHHHHHHHHHHHHHHHHHHH---hhhcCCCCCCc
Q 010376 64 FWTTSSHIITAVIGSGVLSL----AWA-IAQ--LGW-------VAGPTVLILFALVNLYTANLLSQ---CYRSGDPVTGQ 126 (512)
Q Consensus 64 ~~~a~~~li~~~iG~GiL~l----P~a-f~~--~G~-------~~gii~lii~~~~~~~s~~~l~~---~~~~~~~~~~~ 126 (512)
.++-...+..+-+|+|++-- |.. +.+ .|- -.+.....+=|.+..++.+.+.- ++-.++ .+.
T Consensus 95 ~~sW~aMLFaAGmGigLmfwgvaEP~~h~~~PP~g~~~s~eAa~~Am~~t~FHWG~~aWAiYalvglalAYf~yr--~~~ 172 (679)
T PRK09928 95 LLSWAAMLFAAGIGIDLMFFSVAEPVTQYMQPPEGAGQTIEAARQAMVWTLFHYGLTGWSMYALMGMALGYFSYR--YNL 172 (679)
T ss_pred cchHHHHHHHHhhhhhheeehHHhHHHHhCCCCCCCCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHhhc--CCC
Confidence 34455667788888888643 322 111 121 11333344444444444443333 222211 122
Q ss_pred ccccHHHHHHHhhCCc----ceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhhhcccccCCCCCCcccccchhhHHHHHH
Q 010376 127 RNYTYMDAVKANLGGK----KVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKRSNCFQKSGGKDPCHMSSNGYMITFGII 202 (512)
Q Consensus 127 ~~~~y~~l~~~~~G~~----~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 202 (512)
+ .+.+...+-++|++ .+.++|+..++...+....-+-+...+++.-+.... ... . ....+..+++...+
T Consensus 173 p-l~issal~pllG~ri~G~~G~~IDi~av~~tvfGiaTSLGlGv~qi~~GL~~lf-Gi~--~---~~~~q~~ii~vi~~ 245 (679)
T PRK09928 173 P-LTIRSALYPIFGKRINGPIGHSVDIAAVIGTIFGIATTLGIGVVQLNYGLSVLF-DIP--E---SLAAQAALIALSVI 245 (679)
T ss_pred C-CchhHhhhhhcCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-CCC--C---ccHHHHHHHHHHHH
Confidence 2 46777777777753 244566655555544444444444444443333221 110 0 11111112222233
Q ss_pred HHhhccCCCc-chhhHHHHHHHHHHHHHH
Q 010376 203 EVLFSQIPDF-DQVWWLSIVAAIMSFTYS 230 (512)
Q Consensus 203 ~~pl~~~~~l-~~l~~~s~~~~~~~~~~~ 230 (512)
++.++....+ |.+|+.|-++..+.+..+
T Consensus 246 i~~~S~~sGl~KGIk~LS~lN~~La~~Ll 274 (679)
T PRK09928 246 IATISVTSGVNKGIRVLSELNVLLALGLI 274 (679)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444444344 566777777776665433
No 134
>cd08763 Cyt_b561_CYB561 Vertebrate cytochrome b(561), CYB561 gene product. Cytochrome b(561), as found in vertebrates, which might act as a ferric-chelate reductase, catalyzing the reduction of Fe(3+) to Fe(2+), such as associated with the transport of iron from the endosome to the cytoplasm. It is assumed that this protein uses ascorbate as the electron donor. Belongs to the cytochrome b(561) family, which are secretory vesicle-specific electron transport proteins. Cytochromes b(561) are integral membrane proteins that bind two heme groups non-covalently, and may have six alpha-helical trans-membrane segments.
Probab=23.05 E-value=4.2e+02 Score=22.62 Aligned_cols=68 Identities=10% Similarity=0.036 Sum_probs=48.0
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCcccccccccCCChHHHHHHHHHHHHHHHHhhhhhccch
Q 010376 306 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGFGFYNPYWLIDIANAAIVVHLVGAYQVFCQPL 377 (512)
Q Consensus 306 ~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~~~~~~~~~~~i~~~~~~i~~~~s~pl~~~p~ 377 (512)
|+..|.+-..+-...++-..+|+..-..+-++.+ ..|+. +..+|.-.+.-+++.++.+..+..+.+|.
T Consensus 37 k~~~k~~H~~L~~la~~~~~~Gl~av~~~h~~~~---~~hf~-SlHswlGl~t~~L~~lQ~~~G~~~f~~P~ 104 (143)
T cd08763 37 KRSTKILHGLLHIMALVISLVGLVAVFDYHQANG---YPDMY-SLHSWCGILTFVLYFLQWLIGFSFFLFPG 104 (143)
T ss_pred cchhHHHHHHHHHHHHHHHHHHHHHHHHHccccC---CCccc-cHHHHHHHHHHHHHHHHHHHHHHHHHcCC
Confidence 4556668888888888888888877666655422 22331 24688777888888999999988877774
No 135
>PF10716 NdhL: NADH dehydrogenase transmembrane subunit; InterPro: IPR019654 NAD(P)H-quinone oxidoreductase subunit L (NdhL) is a component of the NDH-1L complex that is one of the proton-pumping NADH:ubiquinone oxidoreductases that catalyse the electron transfer from NADH to ubiquinone linked with proton translocation across the membrane. NDH-1L is essential for photoheterotrophic cell growth. NdhL appears to contain two transmembrane helices and it is necessary for the functioning of though not the correct assembly of the NDH-1 complex in Synechocystis 6803. The conservation between cyanobacteria and green plants suggests that chloroplast NDH-1 complexes contain related subunits []. ; GO: 0016655 oxidoreductase activity, acting on NADH or NADPH, quinone or similar compound as acceptor, 0055114 oxidation-reduction process
Probab=22.60 E-value=2.2e+02 Score=21.58 Aligned_cols=30 Identities=17% Similarity=0.003 Sum_probs=19.7
Q ss_pred chHHHHHHhhhhhhhhhhhhhhhhhhhhhcc
Q 010376 435 FFNDVVGILGAMGFWPLTVYFPIEMYKAQKK 465 (512)
Q Consensus 435 ~~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~ 465 (512)
+.-.+....+++. ...-.++|.++|..+++
T Consensus 13 ~~l~vl~~y~~l~-~~YLlVvP~~l~~wm~~ 42 (81)
T PF10716_consen 13 DTLLVLLAYAALA-GLYLLVVPLILYFWMNK 42 (81)
T ss_pred hHHHHHHHHHHHH-HHHHHHHHHHHHHHHHH
Confidence 4444555555554 44788899988888765
No 136
>PF12794 MscS_TM: Mechanosensitive ion channel inner membrane domain 1
Probab=22.17 E-value=7.8e+02 Score=24.44 Aligned_cols=41 Identities=15% Similarity=0.185 Sum_probs=32.8
Q ss_pred hhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCccccccc
Q 010376 306 KTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPNNLLTGF 346 (512)
Q Consensus 306 ~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~~il~~~ 346 (512)
.+-++++..+...+.-.-+.+..+||.......++++..++
T Consensus 44 ~~T~~al~~tll~alp~pl~~~~~g~~L~~~~~~~~~~~~l 84 (340)
T PF12794_consen 44 SHTPRALLLTLLLALPLPLLLLAIGYLLQFAAWSSPFSVAL 84 (340)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCchHHHH
Confidence 56778899999999999999999999988765666665543
No 137
>TIGR00909 2A0306 amino acid transporter.
Probab=20.14 E-value=9.2e+02 Score=24.47 Aligned_cols=46 Identities=11% Similarity=-0.042 Sum_probs=39.8
Q ss_pred cHHHHHHHhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 010376 130 TYMDAVKANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKR 175 (512)
Q Consensus 130 ~y~~l~~~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 175 (512)
...++.++..|+++..++.+...+.++++..+.+...+..+....+
T Consensus 265 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~sR~~~~~a~ 310 (429)
T TIGR00909 265 PLSLVGYDLGQGIGGLILTAGAVFSIASVMLAGIYGTSRVLFAMSR 310 (429)
T ss_pred HHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 4667777888999999999999999999999999999999888774
Done!