Query 010376
Match_columns 512
No_of_seqs 206 out of 1610
Neff 9.4
Searched_HMMs 13730
Date Mon Mar 25 05:28:41 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010376.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/010376hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d2a65a1 f.54.1.1 (A:5-513) Na( 73.3 38 0.0028 31.8 30.2 106 63-175 6-117 (509)
2 d3cx5c1 f.32.1.1 (C:262-385) M 5.1 4.6E+02 0.034 18.6 5.0 56 433-491 24-80 (124)
3 d1ppjc1 f.32.1.1 (C:261-379) M 4.8 5E+02 0.036 18.3 4.9 56 433-491 24-80 (119)
4 d1v54d_ f.23.1.1 (D:) Mitochon 3.6 4.3E+02 0.031 19.5 3.7 42 292-336 62-103 (144)
5 d1mv8a2 c.2.1.6 (A:1-202) GDP- 3.2 1.7E+02 0.012 22.9 0.9 18 74-91 4-23 (202)
6 d1v54l_ f.23.6.1 (L:) Mitochon 3.0 5.1E+02 0.037 14.8 4.5 28 351-381 16-43 (46)
7 d1jb0l_ f.31.1.1 (L:) Photosys 2.6 9.9E+02 0.072 17.4 6.4 24 276-299 124-147 (151)
8 d1wdka3 c.2.1.6 (A:311-496) Fa 2.5 2.4E+02 0.017 21.7 1.1 19 74-92 8-28 (186)
9 d1q90g_ f.23.26.1 (G:) PetG su 2.5 4.7E+02 0.034 13.3 1.9 15 90-104 7-21 (30)
10 d1h2sa_ f.13.1.1 (A:) Sensory 2.3 1.1E+03 0.079 18.1 5.3 115 201-340 77-191 (225)
No 1
>d2a65a1 f.54.1.1 (A:5-513) Na(+):neurotransmitter symporter homologue LeuT {Aquifex aeolicus [TaxId: 63363]}
Probab=73.34 E-value=38 Score=31.84 Aligned_cols=106 Identities=12% Similarity=-0.048 Sum_probs=61.6
Q ss_pred cHHHHHHHHHhhhhhhhh-hHHHHHH-HHhChhHHHHHHHHHHHHHHHHHH----HHHHhhhcCCCCCCcccccHHHHHH
Q 010376 63 NFWTTSSHIITAVIGSGV-LSLAWAI-AQLGWVAGPTVLILFALVNLYTAN----LLSQCYRSGDPVTGQRNYTYMDAVK 136 (512)
Q Consensus 63 s~~~a~~~li~~~iG~Gi-L~lP~af-~~~G~~~gii~lii~~~~~~~s~~----~l~~~~~~~~~~~~~~~~~y~~l~~ 136 (512)
|..+-++..++..+|.|= .-.||-. ++.|.. -++..+++.++...=.. .+.+..++.. ...+..+..
T Consensus 6 s~~~fila~~g~avGlGNiWrFPyl~~~nGGga-FlipY~~~l~l~gvPll~lE~~lGq~~~~g~------i~~~~~i~~ 78 (509)
T d2a65a1 6 TRLGLILAMAGNAVGLGNFLRFPVQAAENGGGA-FMIPYIIAFLLVGIPLMWIEWAMGRYGGAQG------HGTTPAIFY 78 (509)
T ss_dssp CHHHHHHHHHHHHSSHHHHTHHHHHHHHTTTHH-HHHHHHHHHHHTHHHHHHHHHHHHHHHHTTT------CCSHHHHHH
T ss_pred ChHHHHHHHHHHHhcccHHHhhhHHHHhcCCch-hHHHHHHHHHHHHHHHHHHHHHHcCCCCCCc------ccHHHHHHH
Confidence 356778889999999775 6689995 555633 23333333333333222 2333333211 136777777
Q ss_pred HhhCCcceeehHHHHHHHHHHHHHHHHHHHhhhHHHhhh
Q 010376 137 ANLGGKKVIFCGLIQYLNLFGVAIGYTIAASVSMMAIKR 175 (512)
Q Consensus 137 ~~~G~~~~~~~~~~~~~~~~g~~i~y~i~~~~~l~~~~~ 175 (512)
...+.+.-..+.+...+.++..++-|.+..+-.+..+..
T Consensus 79 ~~~~~~~~~giG~~~~~~~~~i~~yy~vi~~w~l~Y~~~ 117 (509)
T d2a65a1 79 LLWRNRFAKILGVFGLWIPLVVAIYYVYIESWTLGFAIK 117 (509)
T ss_dssp HHSCSHHHHHHHTHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HhccCcchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 655443334455666677777777788887776655543
No 2
>d3cx5c1 f.32.1.1 (C:262-385) Mitochondrial cytochrome b subunit, C-terminal domain {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Probab=5.14 E-value=4.6e+02 Score=18.59 Aligned_cols=56 Identities=11% Similarity=0.111 Sum_probs=24.3
Q ss_pred ccc-hHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010376 433 LPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 491 (512)
Q Consensus 433 vp~-~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 491 (512)
+|| .+.++...+|+. +-+.+|-+=.-+.+..+.+...+...+...+..++++..|.
T Consensus 24 iP~k~~Gvl~~~~si~---il~~lP~l~~s~~~s~~~rp~~k~~fw~fv~~fi~LtwlG~ 80 (124)
T d3cx5c1 24 IPDKLLGVITMFAAIL---VLLVLPFTDRSVVRGNTFKVLSKFFFFIFVFNFVLLGQIGA 80 (124)
T ss_dssp SSSHHHHHHHHHHHHH---GGGGHHHHCCCSSSSSTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCcchhhhHHHHHHHH---HHHHHHHHhhhhhhhcchhhHHHHHHHHHHHHHHHHHHhcC
Confidence 675 555555555442 33455533222222222222223344444455555565553
No 3
>d1ppjc1 f.32.1.1 (C:261-379) Mitochondrial cytochrome b subunit, C-terminal domain {Cow (Bos taurus) [TaxId: 9913]}
Probab=4.78 E-value=5e+02 Score=18.30 Aligned_cols=56 Identities=11% Similarity=0.110 Sum_probs=24.4
Q ss_pred ccc-hHHHHHHhhhhhhhhhhhhhhhhhhhhhccCCCchhHHHHHHHHHHHHHHHHHHHH
Q 010376 433 LPF-FNDVVGILGAMGFWPLTVYFPIEMYKAQKKIGRGTTRWLGLQILNVSCFFITLVAA 491 (512)
Q Consensus 433 vp~-~~~i~~l~Ga~~~~~l~fi~P~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 491 (512)
+|| ++.++...+|+ .+-+.+|-+---+.+..+.+...+...+...+-.++++-.|.
T Consensus 24 ipnK~gGvl~m~~si---~il~~lP~l~~~~~~s~~~~~~~~~~fw~fv~~fi~L~wlG~ 80 (119)
T d1ppjc1 24 IPNKLGGVLALAFSI---LILALIPLLHTSKQRSMMFRPLSQCLFWALVADLLTLTWIGG 80 (119)
T ss_dssp CSSHHHHHHHHHHHH---HGGGTHHHHCCCSSSSSTTCHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CCchhHHHHHHHHHH---HHHHHHHHHhcccCCCCeeChHHHHHHHHHHHHHHHHHHhcc
Confidence 775 55555555544 233444543111122111122233444444555556666554
No 4
>d1v54d_ f.23.1.1 (D:) Mitochondrial cytochrome c oxidase subunit IV {Cow (Bos taurus) [TaxId: 9913]}
Probab=3.61 E-value=4.3e+02 Score=19.48 Aligned_cols=42 Identities=12% Similarity=-0.020 Sum_probs=23.1
Q ss_pred HhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCC
Q 010376 292 LEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGD 336 (512)
Q Consensus 292 ~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~ 336 (512)
.+-..||+.|+ ...+.++..++..+.+-.+++...-..+++.
T Consensus 62 ~~t~ae~~~p~---gewK~v~g~~~~~i~~s~~i~~~~r~~v~p~ 103 (144)
T d1v54d_ 62 KESFAEMNRST---NEWKTVVGAAMFFIGFTALLLIWEKHYVYGP 103 (144)
T ss_dssp SSCHHHHTCCC---SHHHHHHHHHHHHHHHHHHHHHHHHHHTCCC
T ss_pred ccccccccCCC---CchhHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 45677888886 5566665555444444444444444445553
No 5
>d1mv8a2 c.2.1.6 (A:1-202) GDP-mannose 6-dehydrogenase {Pseudomonas aeruginosa [TaxId: 287]}
Probab=3.16 E-value=1.7e+02 Score=22.86 Aligned_cols=18 Identities=22% Similarity=0.479 Sum_probs=12.9
Q ss_pred hhhhhhhhHHHHH--HHHhC
Q 010376 74 AVIGSGVLSLAWA--IAQLG 91 (512)
Q Consensus 74 ~~iG~GiL~lP~a--f~~~G 91 (512)
+++|.|-+++|.| |++.|
T Consensus 4 ~ViGlG~vGl~~a~~la~~g 23 (202)
T d1mv8a2 4 SIFGLGYVGAVCAGCLSARG 23 (202)
T ss_dssp EEECCSTTHHHHHHHHHHTT
T ss_pred EEECCCHhHHHHHHHHHhCC
Confidence 4678888888877 44555
No 6
>d1v54l_ f.23.6.1 (L:) Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa) {Cow (Bos taurus) [TaxId: 9913]}
Probab=2.98 E-value=5.1e+02 Score=14.80 Aligned_cols=28 Identities=14% Similarity=0.023 Sum_probs=15.8
Q ss_pred ChHHHHHHHHHHHHHHHHhhhhhccchHHHH
Q 010376 351 PYWLIDIANAAIVVHLVGAYQVFCQPLFAFV 381 (512)
Q Consensus 351 ~~~~~~i~~~~~~i~~~~s~pl~~~p~~~~l 381 (512)
+.| +..+...+.+..-.+.|.++ +|..+
T Consensus 16 Nk~-rLla~m~~~fGsgfa~PF~i--vRhqL 43 (46)
T d1v54l_ 16 NKW-RLLAMMTLFFGSGFAAPFFI--VRHQL 43 (46)
T ss_dssp SHH-HHHHHHHHHHHHHHHHHHHH--HHHHH
T ss_pred hHH-HHHHHHHHHHhccccchHHH--HHHHH
Confidence 344 54555556666666777665 45443
No 7
>d1jb0l_ f.31.1.1 (L:) Photosystem I reaction center subunit XI, PsaL {Synechococcus elongatus [TaxId: 32046]}
Probab=2.59 E-value=9.9e+02 Score=17.37 Aligned_cols=24 Identities=17% Similarity=0.250 Sum_probs=17.9
Q ss_pred HHHHHHHHHhccchhhHhHHhhcC
Q 010376 276 QALGAIAFAYSFSIILLEIQDTIR 299 (512)
Q Consensus 276 ~~~~~~~faf~~~~~i~~i~~em~ 299 (512)
.+++-..|||..-.++.-+..-|+
T Consensus 124 Gg~GGa~fAy~Ll~n~~~~d~i~~ 147 (151)
T d1jb0l_ 124 GAMGSAFVAFFLLENFLVVDGIMT 147 (151)
T ss_dssp HHHHHHHHHHHHHHTHHHHHHHHH
T ss_pred ccccHHHHHHHHHcchHHHHHHHH
Confidence 568888999988888776655444
No 8
>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}
Probab=2.50 E-value=2.4e+02 Score=21.66 Aligned_cols=19 Identities=37% Similarity=0.487 Sum_probs=12.0
Q ss_pred hhhhhhhhHHHHH--HHHhCh
Q 010376 74 AVIGSGVLSLAWA--IAQLGW 92 (512)
Q Consensus 74 ~~iG~GiL~lP~a--f~~~G~ 92 (512)
+++|+|.++..+| +.+.|+
T Consensus 8 aViGaG~mG~~iA~~~a~~G~ 28 (186)
T d1wdka3 8 AVLGAGIMGGGIAYQSASKGT 28 (186)
T ss_dssp EEECCHHHHHHHHHHHHHTTC
T ss_pred EEECcCHHHHHHHHHHHhCCC
Confidence 4678888776554 555554
No 9
>d1q90g_ f.23.26.1 (G:) PetG subunit of the cytochrome b6f complex {Chlamydomonas reinhardtii [TaxId: 3055]}
Probab=2.49 E-value=4.7e+02 Score=13.27 Aligned_cols=15 Identities=27% Similarity=0.317 Sum_probs=7.6
Q ss_pred hChhHHHHHHHHHHH
Q 010376 90 LGWVAGPTVLILFAL 104 (512)
Q Consensus 90 ~G~~~gii~lii~~~ 104 (512)
+|+++|++-..+.++
T Consensus 7 ~GivlGlipiTl~Gl 21 (30)
T d1q90g_ 7 CGIVLGLVPVTIAGL 21 (30)
T ss_dssp HHHHHHHHHHHHHHH
T ss_pred HhHHHhhHHHHHHHH
Confidence 355555555444444
No 10
>d1h2sa_ f.13.1.1 (A:) Sensory rhodopsin II {Archaeon Natronobacterium pharaonis [TaxId: 2257]}
Probab=2.28 E-value=1.1e+03 Score=18.15 Aligned_cols=115 Identities=13% Similarity=0.065 Sum_probs=0.0
Q ss_pred HHHHhhccCCCcchhhHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCCCccccccccccCCCcccchhhHHHHHHHHHH
Q 010376 201 IIEVLFSQIPDFDQVWWLSIVAAIMSFTYSTAGLGLGIGKVAGNRSFKGSLTGISIGTLTSAGTVTGTQKLWRSLQALGA 280 (512)
Q Consensus 201 ~~~~pl~~~~~l~~l~~~s~~~~~~~~~~~~iii~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 280 (512)
++-.|+.+. .+..+...+.-.....+....+.+..+......+...+ -..-.++.
T Consensus 77 ~lT~PLll~-~l~llag~~~~~~~~li~a~~vMiv~G~~g~~~~~~~~------------------------~~~f~~s~ 131 (225)
T d1h2sa_ 77 ILTTPLIVY-FLGLLAGLDSREFGIVITLNTVVMLAGFAGAMVPGIER------------------------YALFGMGA 131 (225)
T ss_dssp HHHHHHHHH-HHHHHHTCCHHHHHHHHHHHHHHHHHHHHHHHCCSTHH------------------------HHHHHHHH
T ss_pred HHHHHHHHH-HHHHHHcccHHHHHHHHHHHHHHHHHHHHHHhccccch------------------------hHHHHHHH
Q ss_pred HHHHhccchhhHhHHhhcCCCchhhhhhhhHHHHHHHHHHHHHHHHHhHhhhhcCCCCCc
Q 010376 281 IAFAYSFSIILLEIQDTIRSPPAEYKTMKKATLFSIIVTTTFYLLCGCMGYAAFGDLAPN 340 (512)
Q Consensus 281 ~~faf~~~~~i~~i~~em~~p~~~~~~~~~~i~~s~~i~~~~Y~~~g~~gy~~fg~~~~~ 340 (512)
..|.|......-+..++.++.+++.|+.-+.+..-..+...+|=+.=.+|..-++...++
T Consensus 132 ~~~~~i~y~l~~~~~~~a~~~~~~~~~~~~~l~~~~~v~W~iYPi~y~l~~~g~~~~~~~ 191 (225)
T d1h2sa_ 132 VAFLGLVYYLVGPMTESASQRSSGIKSLYVRLRNLTVILWAIYPFIWLLGPPGVALLTPT 191 (225)
T ss_dssp HHHHHHHHHHHTHHHHHHTTSCHHHHHHHHHHHHHHHHHHTTHHHHHHHSTTTTCCSCHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchH
Done!