Citrus Sinensis ID: 010377

Local Sequence Feature Prediction

Prediction and (Method)	Result

Residue Number Marker

Protein Sequence

Secondary Structure (PSIPRED)

Secondary Structure Prediction (SSPRO)

Coil and Loop (DISEMBL)

Flexible Loop (DISEMBL)

Low Complexity Region (SEG)

Disordered region (IsUnstruct)

Disordered Region (DISOPRED)

Disordered Region (DISEMBL)

Disordered Region (DISPRO)

Transmembrane Helix (TMHMM)

Transmembrane Helix (HMMTOP)

Transmembrane Helix (MEMSAT)

TM Helix, Signal Peptide (MEMSAT_SVM)

TM Helix, Signal Peptide (Phobius)

Signal Peptide (SignalP HMM Mode)

Signal Peptide (SignalP NN Mode)

Coiled Coils (COILS)

Positional Conservation

--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310-------320-------330-------340-------350-------360-------370-------380-------390-------400-------410-------420-------430-------440-------450-------460-------470-------480-------490-------500-------510--

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

ccccccccccccccccccccccccccccccccccccccccccccHHHHHccccccccccccccccccccccccccccHHHHHHHHHHccccccccEEccccccccccccEEEEEEccccccccEEEEccccccccHHHHccccHHHHHHHcccccHHHHHHHHHHHHHHcccccccHHHHHHcccccccccccccccccccHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHHHHHHcccEEEEcccccccccccccccccccccccccccccccccEEEEEEccccccccEEEcccccccHHHHHHHccccccccccccEEEEEccccccccHHHHHHHHHHcccccccEEEEEEccccccHHcHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

cccEEEcccccccccccccccccccccccccHHHccccccccccccccccccccEEEEccccccccccccccccccHHHHHHHHHHHcccccccccccccccccccccccEEEEEEcccccccEEEEEccHcEEcHHHHcccccHHHHHccccccHHHHHHHHHHHHHHcccccccHHHHHHccHHccccccccccccEccHHHHHHHccccHHHHHHHHHHHHHHHHHHHHHHHHHHcHHHHHcccccccccccHHHHHHHHHHHHHHHcccccccccccEEEEEccHHcccccccEEEEEcccccEEEEEEEcccccccEEEEEcccccHHHHHHHcccccccccccEEEEEEEcccccHHHHHHHHHHHHccccccEEEEEEEccccccHHHHHHHHHHHccccHHHHHHHHHHccccccccHHHHHHHHHHHHHHHHHHHHHccccHHHHHHHHHcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccc

meascslrsskfisppirpphhplsiastisisvirdpnfgsslrlVRRKNRFSirvsssdtlvaGSREVVSKKEEDLGDLkswmhknglppckvilkekpshnekhrpihyvaasedlqagdaafsvpNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKkqgkksfwlpYIRELDrqrgrgqlavespllwsetelayltgsptKAEILERAEGIKREYNELDTVWFMAgslfqqypydipteaFTFEIFKQAFVAVQSCVVHLQKVSLARRFalvplgppllaYSSKCKAMLAAVDDAVQLVVdrpykagesivvwcgpqpnskllinygfvdednpydRLVVEAAlntedpqyqdKRMVAQRNGKLSVQVFHVHAGrekeaisdmlpylrlgyvsdtsEMQSVIsslgpicpvspcmeRAVLDQLADYFKARlagypatlsedeamltdynlhpkkrVATQLVRMEKKMLNACLQVTADMIMllpdvtvspcpapyaplln

meascslrsskfisppirpphhPLSIASTISISVIRDPNFGSSLRLVRRKNrfsirvsssdtlvagsrevvskkeedlgdlkswmhknglpPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAEllttnklsELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETElayltgsptkaEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGEsivvwcgpqpNSKLLINYGFVDEDNPYDRLVVEAALntedpqyqDKRMVAQRNGKLSVQVFHVHAGrekeaisdmlPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTvspcpapyaplln

MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKamlaavddavqlvvdRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

*************************IASTISISVIRDPNFGSSLRLVRRKNRFSI****************************WMHKNGLPPCKVIL************IHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNT**********VAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCP********

*******RSSKFISPPI***************************************************************LKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSE***********PKKRVATQLVRMEKKMLNACLQVTAD***************P*A*L**

*********SKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLLN

***SCSLRSSKFISPPIRPPHHPLSIASTISIS*IR**************************************EEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYA****

oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

SSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo

xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx

no confident homologs detected

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Alignment graph	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query		512	2.2.26 [Sep-21-2011]
B7ZUF3		582	Histone-lysine N-methyltr	yes	no	0.796	0.701	0.230	7e-19
Q86TU7		594	Histone-lysine N-methyltr	yes	no	0.771	0.664	0.232	1e-18
A9X1D0		595	Histone-lysine N-methyltr	N/A	no	0.771	0.663	0.232	4e-18
B0VX69		595	Histone-lysine N-methyltr	yes	no	0.771	0.663	0.237	5e-18
B1MTJ4		595	Histone-lysine N-methyltr	N/A	no	0.771	0.663	0.237	6e-18
C1FXW2		589	Histone-lysine N-methyltr	N/A	no	0.771	0.670	0.237	9e-18
B2KI88		594	Histone-lysine N-methyltr	N/A	no	0.771	0.664	0.237	1e-17
B5FW36		595	Histone-lysine N-methyltr	N/A	no	0.771	0.663	0.237	2e-17
E2RBS6		588	Histone-lysine N-methyltr	yes	no	0.771	0.671	0.237	2e-17
Q91WC0		594	Histone-lysine N-methyltr	yes	no	0.771	0.664	0.230	2e-16

>sp\|B7ZUF3\|SETD3_XENTR Histone-lysine N-methyltransferase setd3 OS=Xenopus tropicalis GN=setd3 PE=2 SV=1	Back alignment and function desciption

 Score = 95.9 bits (237), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 105/455 (23%), Positives = 202/455 (44%), Gaps = 47/455 (10%)

Query: 72  SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131
            K+E+   +L  W  +NG       L E P           + A+ +++A +    VP  
Sbjct: 73  GKREDYFPELMEWCKENGASTDGFELVEFPEEG------FGLKATREIKAEELFLWVPRK 126

Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188
           L++T+E   G+  +  L + +++ +      LA +L+ E+     SFWLPYI+ L  +  
Sbjct: 127 LLMTVESAKGS-VLGPLYSQDRILQAMGNITLAFHLLCERAD-PNSFWLPYIKTLPNE-- 182

Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247
                 ++PL ++E E+ YL  +    ++  + +   R+Y      +F    + Q +P  
Sbjct: 183 -----YDTPLYFNEDEVQYLQSTQAILDVFSQYKNTARQY-----AYFY--KVIQTHPNA 230

Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKAMLAA 304
             +P  ++FTF+ ++ A  +V +    +     +R   AL+PL       +         
Sbjct: 231 NKLPLKDSFTFDDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNL 290

Query: 305 VDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQY 364
            DD  + V  + +K+GE I ++ G + N++ +I+ GF  E+N +DR+ ++  ++  D  Y
Sbjct: 291 EDDRCECVALQDFKSGEQIYIFYGTRSNAEFVIHNGFFFENNLHDRVKIKLGVSKSDRLY 350

Query: 365 QDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL---------GYVSDTSEMQSVI 415
             K  V  R G  +  VF +H   E    + +L +LR+         G++     +  + 
Sbjct: 351 AMKAEVLARAGIPTSSVFALHV-TEPPISAQLLAFLRVFCMNEDELKGHLIGDHAIDKIF 409

Query: 416 SSLGPICPVSPCMERAVLDQLADYFKAR----LAGYPATLSEDEAMLTDYNLHPKKRVAT 471
           +      PVS   E  +  +L  + +AR    L  Y  T+ +D  +L   ++     +A 
Sbjct: 410 TLGNSEFPVS--WENEI--KLWTFLEARASLLLKTYKTTVEDDNKVLEQPDMTFHSAMAI 465

Query: 472 QLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAP 506
           +L R+EK++L   L+  +D   L    +    P P
Sbjct: 466 KLRRVEKEILEKALKSASDNRKLYSKNSEEGTPLP 500

Histone methyltransferase that methylates 'Lys-36' of histone H3 (H3K36me). H3 'Lys-36' methylation represents a specific tag for epigenetic transcriptional activation.
Xenopus tropicalis (taxid: 8364)
EC: 2EC: .EC: 1EC: .EC: 1EC: .EC: 4EC: 3

>sp\|Q86TU7\|SETD3_HUMAN Histone-lysine N-methyltransferase setd3 OS=Homo sapiens GN=SETD3 PE=1 SV=1	Back alignment and function description

>sp\|A9X1D0\|SETD3_PAPAN Histone-lysine N-methyltransferase setd3 OS=Papio anubis GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B0VX69\|SETD3_CALJA Histone-lysine N-methyltransferase setd3 OS=Callithrix jacchus GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|B1MTJ4\|SETD3_CALMO Histone-lysine N-methyltransferase setd3 OS=Callicebus moloch GN=SETD3 PE=3 SV=2	Back alignment and function description

>sp\|C1FXW2\|SETD3_DASNO Histone-lysine N-methyltransferase setd3 OS=Dasypus novemcinctus GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B2KI88\|SETD3_RHIFE Histone-lysine N-methyltransferase setd3 OS=Rhinolophus ferrumequinum GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|B5FW36\|SETD3_OTOGA Histone-lysine N-methyltransferase setd3 OS=Otolemur garnettii GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|E2RBS6\|SETD3_CANFA Histone-lysine N-methyltransferase setd3 OS=Canis familiaris GN=SETD3 PE=3 SV=1	Back alignment and function description

>sp\|Q91WC0\|SETD3_MOUSE Histone-lysine N-methyltransferase setd3 OS=Mus musculus GN=Setd3 PE=1 SV=1	Back alignment and function description

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Alignment Graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		512
449455876		521	PREDICTED: histone-lysine N-methyltransf	0.955	0.938	0.809	0.0
225452167		509	PREDICTED: histone-lysine N-methyltransf	0.888	0.893	0.857	0.0
359488614		515	PREDICTED: histone-lysine N-methyltransf	0.888	0.883	0.846	0.0
224117488		502	SET domain protein [Populus trichocarpa]	0.966	0.986	0.783	0.0
296090251		428	unnamed protein product [Vitis vinifera]	0.833	0.997	0.880	0.0
357497055		501	SET domain protein [Medicago truncatula]	0.925	0.946	0.787	0.0
22326803		514	Rubisco methyltransferase family protein	0.984	0.980	0.748	0.0
18377718		514	unknown protein [Arabidopsis thaliana]	0.984	0.980	0.746	0.0
297807453		516	SET domain-containing protein [Arabidops	0.990	0.982	0.738	0.0
356571407		502	PREDICTED: probable ribulose-1,5 bisphos	0.843	0.860	0.835	0.0

>gi\|449455876\|ref\|XP_004145676.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus] gi\|449492872\|ref\|XP_004159127.1\| PREDICTED: histone-lysine N-methyltransferase setd3-like [Cucumis sativus]	Back alignment and taxonomy information

 Score =  828 bits (2139), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 404/499 (80%), Positives = 442/499 (88%), Gaps = 10/499 (2%)

Query: 21  HHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSSDTLVAGSR-------EVVSK 73
           H PL + S IS+S  R  +F +S   +RR N  S   SSS+TLVAGSR       E V+K
Sbjct: 24  HRPLLLLSKISVSAPRISHFSNSFSPIRRWNVCS--ASSSETLVAGSRKENGKTGEAVTK 81

Query: 74  KEED-LGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSL 132
           KE+D  GDLK+WMH NGLPPCKVIL+EKPSH++ HRPIHYVAASEDL+ GD AFSVPNSL
Sbjct: 82  KEDDEFGDLKAWMHDNGLPPCKVILEEKPSHDKNHRPIHYVAASEDLEVGDVAFSVPNSL 141

Query: 133 VVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQL 192
           VVTLERVLGNET+AELLTTNKLSELACLALYLMYEKKQGKKSFW PYIRELDRQRGRGQL
Sbjct: 142 VVTLERVLGNETVAELLTTNKLSELACLALYLMYEKKQGKKSFWYPYIRELDRQRGRGQL 201

Query: 193 AVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTE 252
           AVESPLLWSE EL YL+GSPTK E+LERAEGIK+EYNELDTVWFMAGSLFQQYPYDIPTE
Sbjct: 202 AVESPLLWSEDELDYLSGSPTKKEVLERAEGIKKEYNELDTVWFMAGSLFQQYPYDIPTE 261

Query: 253 AFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLAAVDDAVQLV 312
           AF+FEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAY S CKAML AVD AV+LV
Sbjct: 262 AFSFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYRSNCKAMLTAVDGAVELV 321

Query: 313 VDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQ 372
           VDRPYKAGESI VWCGPQPNSKLL+NYGFVDEDN YDRLVVEAALNTEDPQYQDKRMVAQ
Sbjct: 322 VDRPYKAGESIAVWCGPQPNSKLLLNYGFVDEDNRYDRLVVEAALNTEDPQYQDKRMVAQ 381

Query: 373 RNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVISSLGPICPVSPCMERAV 432
           RNG+LS+Q F+V+AG+EKEA+ DMLPYLRLGYV+  SEMQSVISS GP+CPVSPCMERA+
Sbjct: 382 RNGRLSIQAFYVYAGKEKEAVLDMLPYLRLGYVTHPSEMQSVISSQGPVCPVSPCMERAM 441

Query: 433 LDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMI 492
           L+Q+ADYFK RLAGYP TLSEDE +L D NL+PKKRVATQLVR+EKK+L++CL+VT D I
Sbjct: 442 LEQVADYFKRRLAGYPTTLSEDEFLLADGNLNPKKRVATQLVRLEKKLLHSCLEVTIDFI 501

Query: 493 MLLPDVTVSPCPAPYAPLL 511
             LPD TVSPCPAPYAPLL
Sbjct: 502 NQLPDHTVSPCPAPYAPLL 520

Source: Cucumis sativus

Species: Cucumis sativus

Genus: Cucumis

Family: Cucurbitaceae

Order: Cucurbitales

Class:

Phylum: Streptophyta

Superkingdom: Eukaryota

>gi\|225452167\|ref\|XP_002264334.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 1 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|359488614\|ref\|XP_003633789.1\| PREDICTED: histone-lysine N-methyltransferase setd3 isoform 2 [Vitis vinifera]	Back alignment and taxonomy information

>gi\|224117488\|ref\|XP_002331687.1\| SET domain protein [Populus trichocarpa] gi\|222874165\|gb\|EEF11296.1\| SET domain protein [Populus trichocarpa]	Back alignment and taxonomy information

>gi\|296090251\|emb\|CBI40070.3\| unnamed protein product [Vitis vinifera]	Back alignment and taxonomy information

>gi\|357497055\|ref\|XP_003618816.1\| SET domain protein [Medicago truncatula] gi\|355493831\|gb\|AES75034.1\| SET domain protein [Medicago truncatula]	Back alignment and taxonomy information

>gi|22326803|ref|NP_196930.2| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|30684815|ref|NP_851038.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|42573363|ref|NP_974778.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|17473570|gb|AAL38260.1| putative protein [Arabidopsis thaliana] gi|23297671|gb|AAN13005.1| unknown protein [Arabidopsis thaliana] gi|332004624|gb|AED92007.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004625|gb|AED92008.1| Rubisco methyltransferase family protein [Arabidopsis thaliana] gi|332004626|gb|AED92009.1| Rubisco methyltransferase family protein [Arabidopsis thaliana]

Back alignment and taxonomy information

>gi\|18377718\|gb\|AAL67009.1\| unknown protein [Arabidopsis thaliana]	Back alignment and taxonomy information

>gi\|297807453\|ref\|XP_002871610.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata] gi\|297317447\|gb\|EFH47869.1\| SET domain-containing protein [Arabidopsis lyrata subsp. lyrata]	Back alignment and taxonomy information

>gi\|356571407\|ref\|XP_003553868.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 1 [Glycine max] gi\|356571409\|ref\|XP_003553869.1\| PREDICTED: probable ribulose-1,5 bisphosphate carboxylase/oxygenase large subunit N-methyltransferase, chloroplastic-like isoform 2 [Glycine max]	Back alignment and taxonomy information

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Alignment graph	Length	Definition	Q cover	H cover	Identity	E-value
Query		512
TAIR\|locus:2145663		514	AT5G14260 "AT5G14260" [Arabido	0.984	0.980	0.730	2.4e-195
TAIR\|locus:2077342		504	AT3G07670 [Arabidopsis thalian	0.884	0.898	0.258	2.8e-23
UNIPROTKB\|Q86TU7		594	SETD3 "Histone-lysine N-methyl	0.769	0.663	0.228	2.9e-17
UNIPROTKB\|F6R2J7		594	SETD3 "Uncharacterized protein	0.769	0.663	0.230	3.7e-17
UNIPROTKB\|A9X1D0		595	SETD3 "Histone-lysine N-methyl	0.769	0.662	0.228	6.3e-17
UNIPROTKB\|B0VX69		595	SETD3 "Histone-lysine N-methyl	0.769	0.662	0.228	6.3e-17
UNIPROTKB\|B1MTJ4		595	SETD3 "Histone-lysine N-methyl	0.769	0.662	0.228	8.1e-17
UNIPROTKB\|B7ZUF3		582	setd3 "Histone-lysine N-methyl	0.792	0.697	0.230	1.3e-16
UNIPROTKB\|F1SAQ4		595	SETD3 "Uncharacterized protein	0.767	0.660	0.233	1.4e-16
UNIPROTKB\|C1FXW2		589	SETD3 "Histone-lysine N-methyl	0.769	0.668	0.230	1.7e-16

TAIR\|locus:2145663 AT5G14260 "AT5G14260" [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

 Score = 1892 (671.1 bits), Expect = 2.4e-195, P = 2.4e-195
 Identities = 380/520 (73%), Positives = 423/520 (81%)

Query:     1 MEASCSLRSSKFISPPIRPPHHPLSIASTISISVIRDPNFGSSLRLVRRKNRFSIRVSSS 60
             ME   +   +K +S PIR    PLS  S  S+   R+    SS R V  +   S+ VSSS
Sbjct:     1 MEGVITCFHTKCVSLPIRS--FPLSRVS--SLPRWRNNKLISSSRSVHLR---SLCVSSS 53

Query:    61 DTLVA-GS-RE------VVSKKE-EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIH 111
             DTLVA GS +E      V SKKE +D  DLK WM KNGLPPCKVILKE+P+H++KH+PIH
Sbjct:    54 DTLVASGSPKEDERQSKVSSKKEGDDSEDLKFWMDKNGLPPCKVILKERPAHDQKHKPIH 113

Query:   112 YVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 171
             YVAASEDLQ GD AFSVP+SLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG
Sbjct:   114 YVAASEDLQKGDVAFSVPDSLVVTLERVLGNETIAELLTTNKLSELACLALYLMYEKKQG 173

Query:   172 KKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNEL 231
             KKS W PYIRELDRQRGRGQL  ESPLLWSE EL YLTGSPTKAE+LERAEGIKREYNEL
Sbjct:   174 KKSVWYPYIRELDRQRGRGQLDAESPLLWSEAELDYLTGSPTKAEVLERAEGIKREYNEL 233

Query:   232 DTVWFMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPL 291
             DTVWFMAGSLFQQYP+DIPTEAF+FEIFKQAFVA+QSCVVHLQ V LARRFALVPLGPPL
Sbjct:   234 DTVWFMAGSLFQQYPFDIPTEAFSFEIFKQAFVAIQSCVVHLQNVGLARRFALVPLGPPL 293

Query:   292 LAYSSKCKXXXXXXXXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRL 351
             LAY S CK               RPYKAG+ IVVWCGPQPN+KLL+NYGFVDEDNPYDR+
Sbjct:   294 LAYCSNCKAMLTAVDGAVELVVDRPYKAGDPIVVWCGPQPNAKLLLNYGFVDEDNPYDRV 353

Query:   352 VVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEM 411
             +VEAALNTEDPQYQDKRMVAQRNGKLS QVF V  G+E+EA+ DMLPYLRLGY+SD SEM
Sbjct:   354 IVEAALNTEDPQYQDKRMVAQRNGKLSQQVFQVRVGKEREAVQDMLPYLRLGYMSDPSEM 413

Query:   412 QSVISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 471
             QSVISS GP+CP+SPCMERAVLDQLA+YF  RL+GYP T  ED+A+L D +L P+KRVAT
Sbjct:   414 QSVISSQGPVCPMSPCMERAVLDQLANYFMRRLSGYPTTPKEDDALLADPSLSPRKRVAT 473

Query:   472 QLVRMEKKMLNACLQVTADMIMLLPDVTVSPCPAPYAPLL 511
             +LV++EKK+L ACL  T D++  LPD  +SPCPAPYAP L
Sbjct:   474 RLVQLEKKILVACLTTTVDLLNQLPDTAISPCPAPYAPSL 513

GO:0003674 "molecular_function" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0009507 "chloroplast" evidence=ISM;IDA

GO:0009570 "chloroplast stroma" evidence=IDA

TAIR\|locus:2077342 AT3G07670 [Arabidopsis thaliana (taxid:3702)]	Back alignment and assigned GO terms

UNIPROTKB\|Q86TU7 SETD3 "Histone-lysine N-methyltransferase setd3" [Homo sapiens (taxid:9606)]	Back alignment and assigned GO terms

UNIPROTKB\|F6R2J7 SETD3 "Uncharacterized protein" [Bos taurus (taxid:9913)]	Back alignment and assigned GO terms

UNIPROTKB\|A9X1D0 SETD3 "Histone-lysine N-methyltransferase setd3" [Papio anubis (taxid:9555)]	Back alignment and assigned GO terms

UNIPROTKB\|B0VX69 SETD3 "Histone-lysine N-methyltransferase setd3" [Callithrix jacchus (taxid:9483)]	Back alignment and assigned GO terms

UNIPROTKB\|B1MTJ4 SETD3 "Histone-lysine N-methyltransferase setd3" [Callicebus moloch (taxid:9523)]	Back alignment and assigned GO terms

UNIPROTKB\|B7ZUF3 setd3 "Histone-lysine N-methyltransferase setd3" [Xenopus (Silurana) tropicalis (taxid:8364)]	Back alignment and assigned GO terms

UNIPROTKB\|F1SAQ4 SETD3 "Uncharacterized protein" [Sus scrofa (taxid:9823)]	Back alignment and assigned GO terms

UNIPROTKB\|C1FXW2 SETD3 "Histone-lysine N-methyltransferase setd3" [Dasypus novemcinctus (taxid:9361)]	Back alignment and assigned GO terms

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by Ezypred Server

Original result from Ezypred Server

Fail to connect to Ezypred Server

EC Number Prediction by EFICAz Software

Prediction Level	EC number	Confidence of Prediction
3rd Layer	2.1.1	LOW CONFIDENCE prediction!

Prediction of Functionally Associated Proteins

Functionally Associated Proteins Detected by STRING

Original result from the STRING server

Your Input:
	GSVIVG00020556001	SubName- Full=Chromosome chr14 scaffold_21, whole genome shotgun sequence; (509 aa)
		(Vitis vinifera)
Predicted Functional Partners:
		Sorry, there are no predicted associations at the current settings.

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database part I

ID	Alignment Graph	Length	Definition	E-value
Query		512
pfam09273		128	pfam09273, Rubis-subs-bind, Rubisco LSMT substrate	1e-27

>gnl\|CDD\|220161 pfam09273, Rubis-subs-bind, Rubisco LSMT substrate-binding	Back alignment and domain information

 Score =  107 bits (268), Expect = 1e-27
 Identities = 45/130 (34%), Positives = 62/130 (47%), Gaps = 7/130 (5%)

Query: 357 LNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSDTSEMQSVIS 416
           L+  DP Y+DK  + +RNG L    F +          ++L YLRL  +SD         
Sbjct: 1   LSPSDPLYEDKLQLLERNGLLENGNFTLGIDGPPSW--ELLAYLRLLCLSDEELTAWKSV 58

Query: 417 SLGPIC-----PVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVAT 471
            LG +      P+SP  E   L  L    K  L+ YP TL EDEA+L   NL  + R+A 
Sbjct: 59  LLGAVIGHKEAPLSPENEEKALQFLEKLCKLLLSEYPTTLEEDEALLKKGNLSEQLRLAV 118

Query: 472 QLVRMEKKML 481
           +L   EK++L
Sbjct: 119 RLRLGEKRIL 128

Members of this family adopt a multihelical structure, with an irregular array of long and short alpha-helices. They allow binding of the protein to substrate, such as the N-terminal tails of histones H3 and H4 and the large subunit of the Rubisco holoenzyme complex. Length = 128

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Alignment Graph	Length	Definition	Probability
Query		512
KOG1337		472	consensus N-methyltransferase [General function pr	100.0
KOG1338		466	consensus Uncharacterized conserved protein [Funct	100.0
PF09273		128	Rubis-subs-bind: Rubisco LSMT substrate-binding; I	99.79
PF00856		162	SET: SET domain; InterPro: IPR001214 The SET domai	99.53
smart00317		116	SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax)	97.32
KOG1085		392	consensus Predicted methyltransferase (contains a	88.56
KOG2589		453	consensus Histone tail methylase [Chromatin struct	87.69
KOG1079		739	consensus Transcriptional repressor EZH1 [Transcri	81.13

>KOG1337 consensus N-methyltransferase [General function prediction only]	Back alignment and domain information

Probab=100.00  E-value=8e-35  Score=312.71  Aligned_cols=325  Identities=34%  Similarity=0.440  Sum_probs=260.1

Q ss_pred             HHHHHHHHHHHhcCCCCCchHHHHhcCCCCCCCccccCCCcccCHhHhhcccCCchHHHHHHHHHHHHHHHHHHHHHHHh
Q 010377          158 ACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFM  237 (512)
Q Consensus       158 ~~Lal~Ll~E~~~g~~S~W~pYi~~LP~~~~~~~~~~~~pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~~l~~~~~~  237 (512)
                      ..++++|+++...+..|+|++|+..||.       .+++|++|..+++..|.+++....+..++..+...+.++..++..
T Consensus       112 ~~l~~~l~~~~~~~~~s~w~~~i~~l~~-------~~~~p~~~~~~~v~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (472)
T KOG1337|consen  112 IALALFLLLEWAHGEISKWKPYISTLPS-------QYNSPLLWSEDEVKSLLSTPLFEIVASRRQNLVNKSAELLEVLQS  184 (472)
T ss_pred             HHHHHHHHHhhhccccccchhhhhhchh-------hcCCccccCHHHHHHhhcchhhHHHHHHHHHhhhhHHHHHHHHHh
Confidence            7899999999998888999999999999       468999999999999999999999988888888877666655433


Q ss_pred             hchhhhcCCCCCCCCCCchHHHHHHHHhhhcceEeeccc------ccccccccccCCCccccCCCCC-ceeEeeeCCeEE
Q 010377          238 AGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKV------SLARRFALVPLGPPLLAYSSKC-KAMLAAVDDAVQ  310 (512)
Q Consensus       238 ~~~l~~~~p~~~~~~~~t~e~f~WA~~~V~SRa~~~~~~------~~~~~~~LvPl~Dmlnnh~~~~-~~~~~~~~~~~~  310 (512)
                      ....+....    .+.|+++.|.||+++|.||+|+.+..      +-....+|+|++||+| |++.. .+.++..++.+.
T Consensus       185 ~~~~~~~~~----~d~~~~~~~~w~~~~~~sr~~~~~~~~~~~~~~~~~~~~L~P~~D~~N-H~~~~~~~~~~~~d~~~~  259 (472)
T KOG1337|consen  185 HPSLFGSDL----FDTFTFSAFKWAYSIVNSRAFYLPSLQRLTAGDPDDNEALAPLIDLLN-HSPEVIKAGYNQEDEAVE  259 (472)
T ss_pred             ccccccccc----cCccchHHHHHHHHHHhhhhhccccccccccCCCCcchhhhhhHHhhc-cCchhccccccCCCCcEE
Confidence            332322222    23389999999999999999986432      1235789999999875 66654 556666777999


Q ss_pred             EEEeCCCCCCCeEEeccCCCChHHHHHhcCccCCCCCCCeEEEEEecCCCCcchHHHHHHHHHcCCCcccEEEEecCCCc
Q 010377          311 LVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHVHAGREK  390 (512)
Q Consensus       311 l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~D~v~l~~~~~~~d~~~~~K~~lL~~~g~~~~~~f~l~~~~~~  390 (512)
                      +++.++|++||||||+||+++|.+||++||||.++||+|.|.+.+.+...|+.+..|.+.+..++......|.+...+++
T Consensus       260 l~~~~~v~~geevfi~YG~~~N~eLL~~YGFv~~~N~~d~v~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  339 (472)
T KOG1337|consen  260 LVAERDVSAGEEVFINYGPKSNAELLLHYGFVEEDNPYDSVTLKLALPPEDVSYLDKSDVLKKNGLPSSGEFSILLTGEP  339 (472)
T ss_pred             EEEeeeecCCCeEEEecCCCchHHHHHhcCCCCCCCCcceEEEeecccccccchhHHHHHHhhcCCCCCceEEEeecCCc
Confidence            99999999999999999999999999999999999999999999999999999999999999999988888887776543


Q ss_pred             cchhchHHHHHHhcC---CChHHHHHHHHhc-------CCCCCCChHhHHHHHHHHHHH-HHHHHhcCCCCHHHHHHhhc
Q 010377          391 EAISDMLPYLRLGYV---SDTSEMQSVISSL-------GPICPVSPCMERAVLDQLADY-FKARLAGYPATLSEDEAMLT  459 (512)
Q Consensus       391 ~~~~~Ll~~LRv~~~---s~~~el~~~~~~~-------~~~~~is~~nE~~vl~~L~~~-l~~~L~~y~ttieeDe~~L~  459 (512)
                      .  .+++...++..+   ..+.++....+..       ...++++..+|...+..+... +...+..+.+++++++..+.
T Consensus       340 ~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~l~~~~~~~~~~~~~~vl~  417 (472)
T KOG1337|consen  340 V--SEMLLLFLLLDALSERLESELVCEETSISRSCEEFLSGLPVSLDNEQKLLYGLQKLLCSLTLRVFKALIDEDESVLK  417 (472)
T ss_pred             h--hhhhhhhhhhccccccchhhhhhhhcccccccccccccCceeecchHHHHHHHhhccccchhcccchhhhhhhhhhc
Confidence            2  333333333322   1222332222111       134677889999999988888 78888899999999999999


Q ss_pred             cCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Q 010377          460 DYNLHPKKRVATQLVRMEKKMLNACLQVTADMIMLLP  496 (512)
Q Consensus       460 ~~~~s~r~~~Ai~~R~~eK~IL~~~l~~l~~~~~~l~  496 (512)
                      ++.++.+..++..++..+|+||.+.+..+..+...+.
T Consensus       418 ~~~l~~~~~~~~k~~~~~~~iL~~~~~~~~~~~~~l~  454 (472)
T KOG1337|consen  418 DNILSKLLELLEKLRTLEKRILEKSLKLLRSRLKLLH  454 (472)
T ss_pred             ccccchhhhhhhhhhhhHHHHHHHHHHHHHHhhhhcc
Confidence            8888899999999999999999999999985554443

>KOG1338 consensus Uncharacterized conserved protein [Function unknown]	Back alignment and domain information

>PF09273 Rubis-subs-bind: Rubisco LSMT substrate-binding; InterPro: IPR015353 This domain adopts a multihelical structure, with an irregular array of long and short alpha-helices	Back alignment and domain information

>PF00856 SET: SET domain; InterPro: IPR001214 The SET domain appears generally as one part of a larger multidomain protein, and recently there were described three structures of very different proteins with distinct domain compositions: Neurospora crassa DIM-5, a member of the Su(var) family of HKMTs which methylate histone H3 on lysine 9,human SET7 (also called SET9), which methylates H3 on lysine 4 and garden pea Rubisco LSMT, an enzyme that does not modify histones, but instead methylates lysine 14 in the flexible tail of the large subunit of the enzyme Rubisco

Back alignment and domain information

>smart00317 SET SET (Su(var)3-9, Enhancer-of-zeste, Trithorax) domain	Back alignment and domain information

>KOG1085 consensus Predicted methyltransferase (contains a SET domain) [General function prediction only]	Back alignment and domain information

>KOG2589 consensus Histone tail methylase [Chromatin structure and dynamics]	Back alignment and domain information

>KOG1079 consensus Transcriptional repressor EZH1 [Transcription]	Back alignment and domain information

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Alignment Graph	Length	Definition	E-value
Query		512
3smt_A		497	Crystal Structure Of Human Set Domain-Containing Pr		1e-17
1mlv_A		444	Structure And Catalytic Mechanism Of A Set Domain P		3e-06
2h21_A		440	Structure Of Rubisco Lsmt Bound To Adomet Length =		4e-06

>pdb|3SMT|A Chain A, Crystal Structure Of Human Set Domain-Containing Protein3 Length = 497

Back alignment and structure

Iteration: 1

Score = 88.2 bits (217), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 98/434 (22%), Positives = 191/434 (44%), Gaps = 39/434 (8%) Query: 72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNS 131 K+E+ DL W +NG V E + E+ + A+ D++A + VP Sbjct: 72 GKREDYFPDLXKWASENG---ASVEGFEXVNFKEEGFGLR---ATRDIKAEELFLWVPRK 125 Query: 132 LVVTLERVLGNETIAELLTTNKLSELA---CLALYLMYEKKQGKKSFWLPYIRELDRQRG 188 L+ T+E N + L + +++ + LA +L+ E+ SFW PYI+ L + Sbjct: 126 LLXTVESA-KNSVLGPLYSQDRILQAXGNIALAFHLLCERA-SPNSFWQPYIQTLPSE-- 181 Query: 189 RGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPY- 247 ++PL + E E+ YL + ++ + + R+Y +F + Q +P+ Sbjct: 182 -----YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY-----AYFY--KVIQTHPHA 229 Query: 248 -DIP-TEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKXXXXX 304 +P ++FT+E ++ A +V + + +R AL+PL + Sbjct: 230 NKLPLKDSFTYEDYRWAVSSVXTRQNQIPTEDGSRVTLALIPLWDXCNHTNGLITTGYNL 289 Query: 305 XXXXXXXXXXRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQY 364 + ++AGE I ++ G + N++ +I+ GF ++N +DR+ ++ ++ D Y Sbjct: 290 EDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLY 349 Query: 365 QDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRL---------GYVSDTSEMQSVI 415 K V R G + VF +H E + +L +LR+ ++ S + + Sbjct: 350 AXKAEVLARAGIPTSSVFALHF-TEPPISAQLLAFLRVFCXTEEELKEHLLGDSAIDRIF 408 Query: 416 SSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQLVR 475 + PVS E + L D L Y T+ ED+++L +++L + + A +L Sbjct: 409 TLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKXAIKLRL 468 Query: 476 MEKKMLNACLQVTA 489 EK++L ++ A Sbjct: 469 GEKEILEKAVKSAA 482

PyMOL of 3smt

>pdb|1MLV|A Chain A, Structure And Catalytic Mechanism Of A Set Domain Protein Methyltransferase Length = 444

Back alignment and structure

>pdb|2H21|A Chain A, Structure Of Rubisco Lsmt Bound To Adomet Length = 440

Back alignment and structure

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Alignment Graph	Length	Definition	E-value
Query		512
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	8e-79
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	1e-70
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	2e-58
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	9e-10
1vt4_I		1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-04

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens} Length = 497	Back alignment and structure

 Score =  254 bits (649), Expect = 8e-79
 Identities = 95/439 (21%), Positives = 186/439 (42%), Gaps = 33/439 (7%)

Query: 67  SREVVSKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAF 126
           S     K+E+   DL  W  +NG       +               + A+ D++A +   
Sbjct: 67  SVTFDGKREDYFPDLMKWASENGASVEGFEMVNFKEEG------FGLRATRDIKAEELFL 120

Query: 127 SVPNSLVVTLERVLGNETIAELLTTNKLSEL---ACLALYLMYEKKQGKKSFWLPYIREL 183
            VP  L++T+E    N  +  L + +++ +      LA +L+ E+     SFW PYI+ L
Sbjct: 121 WVPRKLLMTVESAK-NSVLGPLYSQDRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTL 178

Query: 184 DRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQ 243
             +        ++PL + E E+ YL  +    ++  + +   R+Y     V         
Sbjct: 179 PSE-------YDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQYAYFYKVIQT----HP 227

Query: 244 QYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLAR-RFALVPLGPPLLAYSSKCKAML 302
                   ++FT+E ++ A  +V +    +     +R   AL+PL       +       
Sbjct: 228 HANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGY 287

Query: 303 AAVDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDP 362
              DD  + V  + ++AGE I ++ G + N++ +I+ GF  ++N +DR+ ++  ++  D 
Sbjct: 288 NLEDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDR 347

Query: 363 QYQDKRMVAQRNGKLSVQVFHVHAGREKEAISDMLPYLRLGYVSD---------TSEMQS 413
            Y  K  V  R G  +  VF +H        + +L +LR+  +++          S +  
Sbjct: 348 LYAMKAEVLARAGIPTSSVFALHFTEP-PISAQLLAFLRVFCMTEEELKEHLLGDSAIDR 406

Query: 414 VISSLGPICPVSPCMERAVLDQLADYFKARLAGYPATLSEDEAMLTDYNLHPKKRVATQL 473
           + +      PVS   E  +   L D     L  Y  T+ ED+++L +++L  + ++A +L
Sbjct: 407 IFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEEDKSVLKNHDLSVRAKMAIKL 466

Query: 474 VRMEKKMLNACLQVTADMI 492
              EK++L   ++  A   
Sbjct: 467 RLGEKEILEKAVKSAAVNR 485

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A* Length = 440	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A* Length = 449	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221	Back alignment and structure

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Alignment Graph	Length	Definition	Probability
Query		512
3smt_A		497	Histone-lysine N-methyltransferase SETD3; histone	100.0
2h21_A		440	Ribulose-1,5 bisphosphate carboxylase/oxygenase; S	100.0
3qxy_A		449	N-lysine methyltransferase SETD6; epigenetics, pro	100.0
3qww_A		433	SET and MYND domain-containing protein 2; methyltr	99.07
3n71_A		490	Histone lysine methyltransferase SMYD1; heart deve	99.0
3qwp_A		429	SET and MYND domain-containing protein 3; SMYD3,SE	98.95
1n3j_A		119	A612L, histone H3 lysine methyltransferase; beta b	97.2
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	95.9
3rq4_A		247	Histone-lysine N-methyltransferase SUV420H2; suppr	95.68
3s8p_A		273	Histone-lysine N-methyltransferase SUV420H1; SET d	95.15
2qpw_A		149	PR domain zinc finger protein 2; methyltransferase	95.11
2w5y_A		192	Histone-lysine N-methyltransferase HRX; transcript	94.87
3ooi_A		232	Histone-lysine N-methyltransferase, H3 lysine-36 l	93.59
3ope_A		222	Probable histone-lysine N-methyltransferase ASH1L;	93.46
2f69_A		261	Histone-lysine N-methyltransferase, H3 lysine-4 sp	93.35
3h6l_A		278	Histone-lysine N-methyltransferase SETD2; SET doma	92.31
1h3i_A		293	Histone H3 lysine 4 specific methyltransferase; 2.	91.98
3bo5_A		290	Histone-lysine N-methyltransferase setmar; SET dom	91.8
3hna_A		287	Histone-lysine N-methyltransferase, H3 lysine-9 sp	91.63
3db5_A		151	PR domain zinc finger protein 4; methyltransferase	91.54
1ml9_A		302	Histone H3 methyltransferase DIM-5; adoMet-depende	90.73
2r3a_A		300	Histone-lysine N-methyltransferase SUV39H2; histon	90.66
3ep0_A		170	PR domain zinc finger protein 12; PR domain-contai	90.1
1mvh_A		299	Cryptic LOCI regulator 4; lysine methyltransferase	89.99
3dal_A		196	PR domain zinc finger protein 1; methyltransferase	87.65
3f9x_A		166	Histone-lysine N-methyltransferase SETD8; methyltr	84.78

>3smt_A Histone-lysine N-methyltransferase SETD3; histone methyltransferase, histone modification, LYSI translational modification, structural genomics; HET: SAM; 2.04A {Homo sapiens}	Back alignment and structure

Probab=100.00  E-value=2e-69  Score=581.20  Aligned_cols=404  Identities=23%  Similarity=0.361  Sum_probs=341.9

Q ss_pred             ccchhchhHHHHHHHHCCCCCCCcEEeecCCCCCCCCCeeeEEeecCCCCCCeEEEecCCCccChhhhcCcchHHHhhcc
Q 010377           72 SKKEEDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTT  151 (512)
Q Consensus        72 ~~~~~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~At~dI~~ge~ll~IP~~l~ls~~~a~~~~~l~~~l~~  151 (512)
                      +.+.+.+.+|++|++++|+.+++|+++.+++   .|   +||+|+++|++||+|++||.+++||.+++..+ .++.++..
T Consensus        72 ~~r~~~~~~ll~W~~~~G~~~~~v~i~~~~~---~G---rGl~A~~dI~~ge~ll~IP~~lllt~~~a~~s-~l~~~~~~  144 (497)
T 3smt_A           72 GKREDYFPDLMKWASENGASVEGFEMVNFKE---EG---FGLRATRDIKAEELFLWVPRKLLMTVESAKNS-VLGPLYSQ  144 (497)
T ss_dssp             SCGGGGHHHHHHHHHHTTCCCTTEEEEEETT---TE---EEEEESSCBCTTCEEEEEEGGGCEEHHHHHTS-TTHHHHHH
T ss_pred             cccHHHHHHHHHHHHHCCCCccceEEEEcCC---Cc---cEEEEcccCCCCCEEEEcCHHHhCcHHhhhhh-hccccccc
Confidence            4467889999999999999999999998863   34   48999999999999999999999999998754 35544432


Q ss_pred             CC---CChhHHHHHHHHHHHhcCCCCCchHHHHhcCCCCCCCccccCCCcccCHhHhhcccCCchHHHHHHHHHHHHHHH
Q 010377          152 NK---LSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREY  228 (512)
Q Consensus       152 ~~---l~~~~~Lal~Ll~E~~~g~~S~W~pYi~~LP~~~~~~~~~~~~pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y  228 (512)
                      ..   ...+..|+++|++|+. |+.|+|+|||++||+       .+++|++|+++|+++|+||++...+.++.+.+.++|
T Consensus       145 ~~~l~~~~~~~Lal~Ll~E~~-~~~S~w~pYl~~LP~-------~~~~pl~w~~eel~~L~gt~l~~~v~~~~~~~~~~~  216 (497)
T 3smt_A          145 DRILQAMGNIALAFHLLCERA-SPNSFWQPYIQTLPS-------EYDTPLYFEEDEVRYLQSTQAIHDVFSQYKNTARQY  216 (497)
T ss_dssp             CHHHHHCHHHHHHHHHHHHHT-CTTCTTHHHHTTSCS-------CCCSGGGCCHHHHHTTSSSSHHHHHHHHHHHHHHHH
T ss_pred             ccccccccHHHHHHHHHHHhc-CCCCchHHHHHhCCC-------CCCCCCcCCHHHHhhccCCcHHHHHHHHHHHHHHHH
Confidence            11   1346789999999995 899999999999999       579999999999999999999999888888888899


Q ss_pred             HHHHHHHHhhchhhhcCCCC--CC-CCCCchHHHHHHHHhhhcceEeeccccc-ccccccccCCCccccCCCCCceeEee
Q 010377          229 NELDTVWFMAGSLFQQYPYD--IP-TEAFTFEIFKQAFVAVQSCVVHLQKVSL-ARRFALVPLGPPLLAYSSKCKAMLAA  304 (512)
Q Consensus       229 ~~l~~~~~~~~~l~~~~p~~--~~-~~~~t~e~f~WA~~~V~SRa~~~~~~~~-~~~~~LvPl~Dmlnnh~~~~~~~~~~  304 (512)
                      ..+..       ++..+|..  ++ .+.||+++|+||+++|+||+|.++..+. ....+|||++||+||.+..+++.|+.
T Consensus       217 ~~~~~-------~~~~~p~~~~~~~~~~~t~e~f~wA~~~v~SRa~~~~~~~g~~~~~~LvP~~Dm~NH~~~~~~~~~~~  289 (497)
T 3smt_A          217 AYFYK-------VIQTHPHANKLPLKDSFTYEDYRWAVSSVMTRQNQIPTEDGSRVTLALIPLWDMCNHTNGLITTGYNL  289 (497)
T ss_dssp             HHHHH-------HC----CCCCSTTTTCCCHHHHHHHHHHHHHHCEEEECTTSSSEEEEECTTGGGCEECSCSEEEEEET
T ss_pred             HHHHH-------HHHhCcccccCccccccCHHHHHHhhheEecccccccCcccccccceeechHHhhcCCCcccceeeec
Confidence            87754       34444432  22 3579999999999999999999864322 12579999999987554445678888


Q ss_pred             eCCeEEEEEeCCCCCCCeEEeccCCCChHHHHHhcCccCCCCCCCeEEEEEecCCCCcchHHHHHHHHHcCCCcccEEEE
Q 010377          305 VDDAVQLVVDRPYKAGESIVVWCGPQPNSKLLINYGFVDEDNPYDRLVVEAALNTEDPQYQDKRMVAQRNGKLSVQVFHV  384 (512)
Q Consensus       305 ~~~~~~l~a~r~i~~GeEv~isYG~~sN~~LLl~YGFv~~~Np~D~v~l~~~~~~~d~~~~~K~~lL~~~g~~~~~~f~l  384 (512)
                      +++.+++++.++|++||||||+||+++|++||++|||++++||+|.+.|.+.++..|+++..|.++|+.+|+.....|.+
T Consensus       290 ~~~~~~~~a~~~i~~Geei~isYG~~~n~~Ll~~YGFv~~~Np~D~v~l~l~~~~~d~l~~~K~~~L~~~gl~~~~~f~l  369 (497)
T 3smt_A          290 EDDRCECVALQDFRAGEQIYIFYGTRSNAEFVIHSGFFFDNNSHDRVKIKLGVSKSDRLYAMKAEVLARAGIPTSSVFAL  369 (497)
T ss_dssp             TTTEEEEEESSCBCTTCEEEECCCSCCHHHHHHHHSCCCTTCTTCEEEEEEECCTTSTTHHHHHHHHHHTTCCSEEEEEE
T ss_pred             cCCeEEEEeCCccCCCCEEEEeCCCCChHHHHHHCCCCCCCCCCceEEEEecCCCcchhHHHHHHHHHHcCCCccceeee
Confidence            88999999999999999999999999999999999999999999999999999999999999999999999988888998


Q ss_pred             ecCCCccchhchHHHHHHhcCCChHHHHHHHHhc----------CCCCCCChHhHHHHHHHHHHHHHHHHhcCCCCHHHH
Q 010377          385 HAGREKEAISDMLPYLRLGYVSDTSEMQSVISSL----------GPICPVSPCMERAVLDQLADYFKARLAGYPATLSED  454 (512)
Q Consensus       385 ~~~~~~~~~~~Ll~~LRv~~~s~~~el~~~~~~~----------~~~~~is~~nE~~vl~~L~~~l~~~L~~y~ttieeD  454 (512)
                      +.++ .+++.+|+++||+++++ ++|+..+....          ...+|+|.+||.++++.|...|..+|+.|+||++||
T Consensus       370 ~~~~-~~~~~~Ll~~LRvl~~~-~~el~~~~~~~~~~~~~~~l~~~~~piS~~nE~~v~~~L~~~~~~~L~~Y~TtieeD  447 (497)
T 3smt_A          370 HFTE-PPISAQLLAFLRVFCMT-EEELKEHLLGDSAIDRIFTLGNSEFPVSWDNEVKLWTFLEDRASLLLKTYKTTIEED  447 (497)
T ss_dssp             ESSS-SCSCHHHHHHHHHHTCC-HHHHHHHHHTCSSSCTTTTTTCTTSCSCHHHHHHHHHHHHHHHHHHHHTCSSCHHHH
T ss_pred             ecCC-CCCCHHHHHHHHHHhCC-HHHHHHHhcccchhhhhhhcccccCCCChhhHHHHHHHHHHHHHHHHHcCCCcHHHH
Confidence            7654 35789999999999995 78888876532          124688999999999999999999999999999999


Q ss_pred             HHhhccCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHh----cCCCCC
Q 010377          455 EAMLTDYNLHPKKRVATQLVRMEKKMLNACLQVTADMIM----LLPDVT  499 (512)
Q Consensus       455 e~~L~~~~~s~r~~~Ai~~R~~eK~IL~~~l~~l~~~~~----~l~~~~  499 (512)
                      +++|++++++.|+++|+++|+|||+||+.+++.++....    +++|++
T Consensus       448 e~lL~~~~ls~r~r~Av~vR~gEK~IL~~~l~~~~~~~~~~~~~~~~~~  496 (497)
T 3smt_A          448 KSVLKNHDLSVRAKMAIKLRLGEKEILEKAVKSAAVNREYYRQQMEEKA  496 (497)
T ss_dssp             HHHTTCTTSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCC----
T ss_pred             HHHHhcCCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccC
Confidence            999998888999999999999999999999999876554    555544

PyMOL of 3smt

>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain, protein lysine methyltransferase, transferase; HET: SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*	Back alignment and structure

>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine methyltransferase, transferase, network VIA methyllysine signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*	Back alignment and structure

>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*	Back alignment and structure

>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}	Back alignment and structure

>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*	Back alignment and structure

>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer; NMR {Paramecium bursaria chlorella virus 1} SCOP: b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor, variegation 4-20 homolog 2, structural genomics, structural genomics consortium, SGC; HET: SAM; 1.80A {Homo sapiens}	Back alignment and structure

>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone methyltransferase, transcription regulat histone lysine, SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo sapiens}	Back alignment and structure

>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator, alternative initiation, alternative splicing, DNA-binding, metal-binding, nucleus; 1.79A {Homo sapiens} PDB: 2jv0_A*	Back alignment and structure

>2w5y_A Histone-lysine N-methyltransferase HRX; transcription regulation, chromosomal rearrangement, protein lysine methyltransferase, proto-oncogene; HET: SAH; 2.00A {Homo sapiens} PDB: 2w5z_A*	Back alignment and structure

>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20 specific; SET domain, S-adenosyl-L methionine; HET: SAM; 1.75A {Homo sapiens}	Back alignment and structure

>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus; HET: SAM; 2.90A {Homo sapiens}	Back alignment and structure

>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET domain, protein lysine methyltransferase, enzyme- peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A* 3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A* 4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*	Back alignment and structure

>1h3i_A Histone H3 lysine 4 specific methyltransferase; 2.1A {Homo sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 1mt6_A* 1n6c_A* 1muf_A	Back alignment and structure

>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati regulator, DNA damage, DNA repair, DNA-binding, nucleus, ST genomics; HET: SAH; 1.59A {Homo sapiens}	Back alignment and structure

>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1, structural genomics, SGC, structural genomics consortium, alternative splicing, ANK repeat; HET: MLZ SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A* 3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 4h4h_A* 4i51_A* 3fpd_A* 3k5k_A* 3nni_A* 3rjw_A* 2o8j_A*	Back alignment and structure

>3db5_A PR domain zinc finger protein 4; methyltransferase, PRDM4, structural genomics, structural GE consortium, SGC, DNA-binding, metal-binding, nucleus; 2.15A {Homo sapiens}	Back alignment and structure

>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent methyltransferase histone H3 lysine- 9 methylation; 1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*	Back alignment and structure

>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9 methyltransferase 2, H3 lysine-9 specific 2, alternative splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}	Back alignment and structure

>3ep0_A PR domain zinc finger protein 12; PR domain-containing protein 12, structural genomics, structural genomics consortium, SGC, DNA-binding; 2.10A {Homo sapiens}	Back alignment and structure

>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4, SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP: b.85.7.1 PDB: 1mvx_A	Back alignment and structure

>3dal_A PR domain zinc finger protein 1; methyltransferase, PRDM1, structural genomics, structural genomics consortium, SGC, DNA-binding, metal-binding; 1.65A {Homo sapiens}	Back alignment and structure

>3f9x_A Histone-lysine N-methyltransferase SETD8; methyltransferase, SET, lysine, alternative splicing, cell cycle, cell division, chromatin regulator, chromosomal protein, coiled coil; HET: MLY SAH; 1.25A {Homo sapiens} PDB: 3f9w_A* 3f9y_A* 3f9z_A* 1zkk_A* 4ij8_A* 2bqz_A*	Back alignment and structure

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	E-value
Query		512
d2h2ja2		261	b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain	6e-35
d2h2ja1		176	a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, sub	1e-27

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 261	Back information, alignment and structure


class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

 Score =  129 bits (325), Expect = 6e-35
 Identities = 56/278 (20%), Positives = 100/278 (35%), Gaps = 32/278 (11%)

Query: 80  DLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERV 139
               W+ + G+   K  +K              + A +D+   D    VP  L +  + V
Sbjct: 7   TFWKWLQEEGVITAKTPVKASVVTEGLG-----LVALKDISRNDVILQVPKRLWINPDAV 61

Query: 140 LGNETIAELLTTNKLSELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLL 199
             +E        ++L     + L+L+ E+   + S W  Y   L ++        +S + 
Sbjct: 62  AASEIGRVC---SELKPWLSVILFLIRERS-REDSVWKHYFGILPQE-------TDSTIY 110

Query: 200 WSETELAYLTGSPTKAEILERAEGIKREYNELDTVWFMAGSLFQQYPYDIPTEAFTFEIF 259
           WSE EL  L GS      +   E +K E  +L+    +           +  +  T + F
Sbjct: 111 WSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNK-------RLFPDPVTLDDF 163

Query: 260 KQAFVAVQSCVVHLQKVSLARRFALVPLGP-------PLLAYSSKCKAMLAAVDDAVQLV 312
             AF  ++S      +        +  L            AY  K  A L + D    L 
Sbjct: 164 FWAFGILRSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLK 223

Query: 313 VDRPYKAGESIVVWCGPQ-PNSKLLINYGFVDED-NPY 348
                KAGE + +       N++L ++YGF++ + N +
Sbjct: 224 SPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH 261

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]} Length = 176	Back information, alignment and structure

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Alignment Graph	Length	Definition	Probability
Query		512
d2h2ja2		261	RuBisCo LSMT catalytic domain {Garden pea (Pisum s	100.0
d2h2ja1		176	RuBisCo LSMT C-terminal, substrate-binding domain	99.86
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	97.13
d2f69a2		171	Histone H3 K4-specific methyltransferase SET7/9 ca	95.91
d1mvha_		269	SET domain of Clr4 {Fission yeast (Schizosaccharom	92.53
d1ml9a_		284	Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	92.19
d2g46a1		119	Viral histone H3 Lysine 27 Methyltransferase {Para	81.83

>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

class: All beta proteins
fold: beta-clip
superfamily: SET domain
family: RuBisCo LSMT catalytic domain
domain: RuBisCo LSMT catalytic domain
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=100.00  E-value=3e-41  Score=330.69  Aligned_cols=246  Identities=22%  Similarity=0.336  Sum_probs=200.9

Q ss_pred             hchhHHHHHHHHCCCCCCCcEEeecCCCCCCCCCeeeEEeecCCCCCCeEEEecCCCccChhhhcCcchHHHhhccCCCC
Q 010377           76 EDLGDLKSWMHKNGLPPCKVILKEKPSHNEKHRPIHYVAASEDLQAGDAAFSVPNSLVVTLERVLGNETIAELLTTNKLS  155 (512)
Q Consensus        76 ~~~~~f~~Wl~~~G~~~~~v~i~~~~~~~g~Grg~~Gl~At~dI~~ge~ll~IP~~l~ls~~~a~~~~~l~~~l~~~~l~  155 (512)
                      ++.+.|++|++++|+..+++.+.....  |.|   |||+|++||++||+|++||.+++||.+++..+. +.+.+  ....
T Consensus         3 ~~~~~~~~W~~~~g~~~~~~~~~~~~~--~~G---rGl~AtrdI~~Ge~il~vP~~~~lt~~~~~~~~-~~~~~--~~~~   74 (261)
T d2h2ja2           3 PAVQTFWKWLQEEGVITAKTPVKASVV--TEG---LGLVALKDISRNDVILQVPKRLWINPDAVAASE-IGRVC--SELK   74 (261)
T ss_dssp             HHHHHHHHHHHTTTSSCSSCCCEEEEE--TTE---EEEECSSCCCTTCEEEEEEGGGCCSHHHHHTSG-GGTTT--TTSC
T ss_pred             hHHHHHHHHHHHCCCccCCceEeecCC--Cce---eEEEECCcCCCCCEEEEeChHHhccHHHhhhhH-HHHHH--hhcC
Confidence            567889999999999998887765432  344   589999999999999999999999999876653 44433  2457


Q ss_pred             hhHHHHHHHHHHHhcCCCCCchHHHHhcCCCCCCCccccCCCcccCHhHhhcccCCchHHHHHHHHHHHHHHHHHHHHHH
Q 010377          156 ELACLALYLMYEKKQGKKSFWLPYIRELDRQRGRGQLAVESPLLWSETELAYLTGSPTKAEILERAEGIKREYNELDTVW  235 (512)
Q Consensus       156 ~~~~Lal~Ll~E~~~g~~S~W~pYi~~LP~~~~~~~~~~~~pl~W~~~el~~L~gs~l~~~~~~~~~~i~~~y~~l~~~~  235 (512)
                      ++..++++|++|+. +..|.|+||++.||+       .+.+|++|+.++++.|+++.+...+....+.+.++|.++... 
T Consensus        75 ~~~~l~~~l~~e~~-~~~s~~~~y~~~lp~-------~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~-  145 (261)
T d2h2ja2          75 PWLSVILFLIRERS-REDSVWKHYFGILPQ-------ETDSTIYWSEEELQELQGSQLLKTTVSVKEYVKNECLKLEQE-  145 (261)
T ss_dssp             HHHHHHHHHHHHHH-CTTCTTHHHHTTSCS-------CCSCGGGCCHHHHHTTTTCHHHHHHHHHHHHHHHHHHHHHHH-
T ss_pred             cHHHHHHHHHHHHh-CCCCchhhhhhcccc-------ccCCcccCCHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHH-
Confidence            88999999999994 899999999999999       478999999999999999999999998889999999887653 


Q ss_pred             HhhchhhhcCCCCCCCCCCchHHHHHHHHhhhcceEeecccccccccccccCCCccccCCCCCceeEe-----------e
Q 010377          236 FMAGSLFQQYPYDIPTEAFTFEIFKQAFVAVQSCVVHLQKVSLARRFALVPLGPPLLAYSSKCKAMLA-----------A  304 (512)
Q Consensus       236 ~~~~~l~~~~p~~~~~~~~t~e~f~WA~~~V~SRa~~~~~~~~~~~~~LvPl~Dmlnnh~~~~~~~~~-----------~  304 (512)
                           ++..++. ...+.++++.|.||+++|.||+|.++..   ...+|+|++||+| |+...++.+.           .
T Consensus       146 -----~~~~~~~-~~~~~~~~~~~~~a~~~v~sr~~~~~~~---~~~~l~P~~d~~N-Hsc~pn~~~~~~~~~~~~~~~~  215 (261)
T d2h2ja2         146 -----IILPNKR-LFPDPVTLDDFFWAFGILRSRAFSRLRN---ENLVVVPMADLIN-HSAGVTTEDHAYEVKGAAGLFS  215 (261)
T ss_dssp             -----TTTTTTT-TCCSCCCHHHHHHHHHHHHHHSBCCC------CCBCCTTGGGCE-ECSSCCSCCCCCC---------
T ss_pred             -----HHhhhhh-hccCccCHHHHHHHHHHhhccccccccc---ccccchhhhHHhh-cCCCCCcccccccccCcccccC
Confidence                 2333332 2345689999999999999999987643   4679999999886 6655554332           2


Q ss_pred             eCCeEEEEEeCCCCCCCeEEeccCC-CChHHHHHhcCccCCC-CCC
Q 010377          305 VDDAVQLVVDRPYKAGESIVVWCGP-QPNSKLLINYGFVDED-NPY  348 (512)
Q Consensus       305 ~~~~~~l~a~r~i~~GeEv~isYG~-~sN~~LLl~YGFv~~~-Np~  348 (512)
                      .++.++|+|.|+|++||||||+||+ ++|++||.+||||+++ |||
T Consensus       216 ~~~~~~l~A~r~I~~GEEI~isYG~~~~n~~ll~~yGFv~~~~n~~  261 (261)
T d2h2ja2         216 WDYLFSLKSPLSVKAGEQVYIQYDLNKSNAELALDYGFIEPNENRH  261 (261)
T ss_dssp             --CEEEEECSSCCCTTSBCEECSCSSCCHHHHHHHSSCCCSCGGGC
T ss_pred             CCcEEEEEECCCCCCCCEEEEecCCCCCHHHHHHhCCCCCCCCCCC
Confidence            3568999999999999999999995 7999999999999876 987

PyMOL of d2h2ja2

>d2h2ja1 a.166.1.1 (A:311-486) RuBisCo LSMT C-terminal, substrate-binding domain {Garden pea (Pisum sativum) [TaxId: 3888]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure

>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific methyltransferase SET7/9 catalytic domain {Human (Homo sapiens) [TaxId: 9606]}	Back information, alignment and structure

>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast (Schizosaccharomyces pombe) [TaxId: 4896]}	Back information, alignment and structure

>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId: 5141]}	Back information, alignment and structure

>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27 Methyltransferase {Paramecium bursaria chlorella virus 1, PBCV-1 [TaxId: 10506]}	Back information, alignment and structure