BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010378
         (512 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1VYX|A Chain A, Solution Structure Of The Kshv K3 N-Terminal Domain
          Length = 60

 Score = 52.4 bits (124), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 9/58 (15%)

Query: 260 EDIPEEEAVCRICFIELG-EGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316
           ED+P    VC IC  ELG E F A    CGC GEL   HR C   W +I  N  C++C
Sbjct: 4   EDVP----VCWICNEELGNERFRA----CGCTGELENVHRSCLSTWLTISRNTACQIC 53


>pdb|2D8S|A Chain A, Solution Structure Of The Ring Domain Of The Human
           Cellular Modulator Of Immune Recognition Protein
          Length = 80

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)

Query: 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
           P  + +CRIC  E G+    L   C C G L F H+ C  +W      + CE+CK E
Sbjct: 12  PSSQDICRICHCE-GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 67


>pdb|2EP4|A Chain A, Solution Structure Of Ring Finger From Human Ring Finger
           Protein 24
          Length = 74

 Score = 31.2 bits (69), Expect = 1.5,   Method: Composition-based stats.
 Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 17/75 (22%)

Query: 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTL 327
           +C +C +E  +  D L + C CK   AF HR+C +KW  ++  K C +C     N+PV  
Sbjct: 17  LCAVC-LEDFKPRDELGI-CPCKH--AF-HRKCLIKWLEVR--KVCPLC-----NMPV-- 62

Query: 328 LRLQNVQASSLPDSG 342
             LQ  Q S  P SG
Sbjct: 63  --LQLAQLSG-PSSG 74


>pdb|3NWZ|A Chain A, Crystal Structure Of Bh2602 Protein From Bacillus
           Halodurans With Coa, Northeast Structural Genomics
           Consortium Target Bhr199
 pdb|3NWZ|B Chain B, Crystal Structure Of Bh2602 Protein From Bacillus
           Halodurans With Coa, Northeast Structural Genomics
           Consortium Target Bhr199
 pdb|3NWZ|C Chain C, Crystal Structure Of Bh2602 Protein From Bacillus
           Halodurans With Coa, Northeast Structural Genomics
           Consortium Target Bhr199
 pdb|3NWZ|D Chain D, Crystal Structure Of Bh2602 Protein From Bacillus
           Halodurans With Coa, Northeast Structural Genomics
           Consortium Target Bhr199
          Length = 176

 Score = 28.9 bits (63), Expect = 7.8,   Method: Compositional matrix adjust.
 Identities = 17/80 (21%), Positives = 40/80 (50%), Gaps = 3/80 (3%)

Query: 120 KYRNTTSDIEKAAILALGSSFTETREKPRIARASSLTKLLTPRMKKTS---SFPVTPVSH 176
           ++ +T ++ EK  + ++       +E+      +SLT++ +   +        P+ P+ +
Sbjct: 16  RFLSTANEEEKDVLSSIVDGLLAKQERRYATYLASLTQIESQEREDGRFEVRLPIGPLVN 75

Query: 177 SNPESIHGGLTTDLLNSAKG 196
           +    +HGG+T  LL++A G
Sbjct: 76  NPLNXVHGGITATLLDTAXG 95


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.319    0.132    0.387 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,881,751
Number of Sequences: 62578
Number of extensions: 468364
Number of successful extensions: 745
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 743
Number of HSP's gapped (non-prelim): 5
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 54 (25.4 bits)