BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010378
(512 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q5XIV2|MARHA_RAT Probable E3 ubiquitin-protein ligase MARCH10 OS=Rattus norvegicus
GN=March10 PE=2 SV=1
Length = 790
Score = 56.6 bits (135), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGN--------KTCEVCKQ 318
CRIC I G + L CGC G L F H+EC KW +K KTCE+CKQ
Sbjct: 641 CRICQIAGGSPANPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLSTVKTCEMCKQ 698
>sp|Q8NA82|MARHA_HUMAN Probable E3 ubiquitin-protein ligase MARCH10 OS=Homo sapiens
GN=MARCH10 PE=2 SV=3
Length = 808
Score = 55.5 bits (132), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 30/58 (51%), Gaps = 8/58 (13%)
Query: 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------GNKTCEVCKQ 318
CRIC I G + L CGC G L F H+EC KW +K KTCE+CKQ
Sbjct: 659 CRICQIAGGSPSNPLLEPCGCVGSLQFVHQECLKKWLKVKITSGADLGAVKTCEMCKQ 716
>sp|Q5XI50|MARH7_RAT E3 ubiquitin-protein ligase MARCH7 OS=Rattus norvegicus GN=March7
PE=2 SV=1
Length = 692
Score = 50.1 bits (118), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 31/62 (50%), Gaps = 8/62 (12%)
Query: 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNK--------TCEVCKQE 319
+CRIC + + L C C G L + H+EC KW K N TCE+CK++
Sbjct: 552 LCRICQMAAASSSNLLIEPCKCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEK 611
Query: 320 VE 321
++
Sbjct: 612 LQ 613
>sp|Q9WV66|MARH7_MOUSE E3 ubiquitin-protein ligase MARCH7 OS=Mus musculus GN=March7 PE=2
SV=1
Length = 693
Score = 50.1 bits (118), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/102 (26%), Positives = 41/102 (40%), Gaps = 30/102 (29%)
Query: 250 NTTDKKDDGGEDIPEEE----------------------AVCRICFIELGEGFDALKMEC 287
N+TD K+D + P + +CRIC + + L C
Sbjct: 513 NSTDGKNDKAKSAPSRDPEKLQKIKESLLLEDSDDEEEGDLCRICQMAAASSSNLLIEPC 572
Query: 288 GCKGELAFAHRECAVKWFSIKGNK--------TCEVCKQEVE 321
C G L + H+EC KW K N TCE+CK++++
Sbjct: 573 KCTGSLQYVHQECMKKWLQAKINSGSSLEAVTTCELCKEKLQ 614
>sp|Q9H992|MARH7_HUMAN E3 ubiquitin-protein ligase MARCH7 OS=Homo sapiens GN=MARCH7 PE=1
SV=1
Length = 704
Score = 49.7 bits (117), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNK--------TCEVCKQEV 320
CRIC + + L C C G L + H++C KW K N TCE+CK+++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 321 E 321
E
Sbjct: 612 E 612
>sp|Q5R9W2|MARH7_PONAB E3 ubiquitin-protein ligase MARCH7 OS=Pongo abelii GN=MARCH7 PE=2
SV=1
Length = 707
Score = 49.7 bits (117), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 30/61 (49%), Gaps = 8/61 (13%)
Query: 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNK--------TCEVCKQEV 320
CRIC + + L C C G L + H++C KW K N TCE+CK+++
Sbjct: 552 CRICQMAAASSSNLLIEPCKCTGSLQYVHQDCMKKWLQAKINSGSSLEAVTTCELCKEKL 611
Query: 321 E 321
E
Sbjct: 612 E 612
>sp|P90495|MIR1_HHV8P E3 ubiquitin-protein ligase MIR1 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K3 PE=1 SV=1
Length = 333
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 31/58 (53%), Gaps = 9/58 (15%)
Query: 260 EDIPEEEAVCRICFIELG-EGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316
ED+P VC IC ELG E F A CGC GEL HR C W +I N C++C
Sbjct: 4 EDVP----VCWICNEELGNERFRA----CGCTGELENVHRSCLSTWLTISRNTACQIC 53
>sp|Q6ZQ89|MARH6_MOUSE E3 ubiquitin-protein ligase MARCH6 OS=Mus musculus GN=March6 PE=2
SV=2
Length = 909
Score = 48.5 bits (114), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324
EE +CR+C E G L C C G + F H+EC V+W + CE+CK P
Sbjct: 5 EEDICRVCRSE-GTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 325 V 325
+
Sbjct: 64 I 64
>sp|Q9DBD2|MARH8_MOUSE E3 ubiquitin-protein ligase MARCH8 OS=Mus musculus GN=March8 PE=2
SV=1
Length = 286
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
P + +CRIC E G+ L C C G L F H+ C +W + CE+CK E
Sbjct: 70 PSNQDICRICHCE-GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 125
>sp|Q5R9W1|MARH6_PONAB E3 ubiquitin-protein ligase MARCH6 OS=Pongo abelii GN=MARCH6 PE=2
SV=1
Length = 910
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324
EE +CR+C E G L C C G + F H+EC V+W + CE+CK P
Sbjct: 5 EEDICRVCRSE-GTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 325 V 325
+
Sbjct: 64 I 64
>sp|O60337|MARH6_HUMAN E3 ubiquitin-protein ligase MARCH6 OS=Homo sapiens GN=MARCH6 PE=1
SV=2
Length = 910
Score = 48.1 bits (113), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/61 (36%), Positives = 30/61 (49%), Gaps = 1/61 (1%)
Query: 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324
EE +CR+C E G L C C G + F H+EC V+W + CE+CK P
Sbjct: 5 EEDICRVCRSE-GTPEKPLYHPCVCTGSIKFIHQECLVQWLKHSRKEYCELCKHRFAFTP 63
Query: 325 V 325
+
Sbjct: 64 I 64
>sp|Q0VD59|MARH8_BOVIN E3 ubiquitin-protein ligase MARCH8 OS=Bos taurus GN=MARCH8 PE=2
SV=1
Length = 289
Score = 46.6 bits (109), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
P + +CRIC E G+ L C C G L F H+ C +W + CE+CK E
Sbjct: 72 PSNQDICRICHCE-GDDESPLITPCRCTGSLHFVHQTCLQQWIKSSDTRCCELCKYE 127
>sp|Q5T0T0|MARH8_HUMAN E3 ubiquitin-protein ligase MARCH8 OS=Homo sapiens GN=MARCH8 PE=1
SV=1
Length = 291
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
P + +CRIC E G+ L C C G L F H+ C +W + CE+CK E
Sbjct: 74 PSSQDICRICHCE-GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYE 129
>sp|Q9P0N8|MARH2_HUMAN E3 ubiquitin-protein ligase MARCH2 OS=Homo sapiens GN=MARCH2 PE=1
SV=1
Length = 246
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 32/106 (30%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 261 DIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE- 319
D P + CRIC G + L CGC G L H+ C KW S CE+C E
Sbjct: 56 DTPSDGPFCRIC--HEGANGECLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 320 -VENLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
VE P L L D G + + + D+ + ++ LA
Sbjct: 114 AVEKRPRPLTEW-------LKDPGPRTEKRTLCCDMVCFLFITPLA 152
>sp|Q5I0I2|MARH2_RAT E3 ubiquitin-protein ligase MARCH2 OS=Rattus norvegicus GN=March2
PE=1 SV=1
Length = 246
Score = 46.6 bits (109), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 33/106 (31%), Positives = 43/106 (40%), Gaps = 11/106 (10%)
Query: 261 DIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE- 319
D P + CRIC G + L CGC G L H+ C KW S CE+C E
Sbjct: 56 DTPSDCPFCRIC--HEGANGENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEF 113
Query: 320 -VENLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
VE P L L D G + + + D+ V ++ LA
Sbjct: 114 AVEKRPRPL-------TEWLKDPGPRTEKRTLCCDMVCFVFITPLA 152
>sp|Q6NZQ8|MARH1_MOUSE E3 ubiquitin-protein ligase MARCH1 OS=Mus musculus GN=March1 PE=1
SV=2
Length = 289
Score = 45.8 bits (107), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 26/87 (29%), Positives = 38/87 (43%), Gaps = 2/87 (2%)
Query: 234 RVAEGSGTTSSNTFPSNTTDKKDDGGEDI-PEEEAVCRICFIELGEGFDALKMECGCKGE 292
R A S S + P+ T + + P + +CRIC E G+ L C C G
Sbjct: 44 RSASRSSNISKASSPTTGTAPRSQSRLSVCPSTQDICRICHCE-GDEESPLITPCRCTGT 102
Query: 293 LAFAHRECAVKWFSIKGNKTCEVCKQE 319
L F H+ C +W + CE+CK +
Sbjct: 103 LRFVHQSCLHQWIKSSDTRCCELCKYD 129
>sp|Q5XH39|MARH8_XENLA E3 ubiquitin-protein ligase MARCH8 OS=Xenopus laevis GN=march8 PE=2
SV=2
Length = 264
Score = 45.8 bits (107), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
P + +CRIC E G+ L C C G L F H+ C +W + CE+CK E
Sbjct: 47 PSSQDICRICHCE-GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFE 102
>sp|Q28IK8|MARH8_XENTR E3 ubiquitin-protein ligase MARCH8 OS=Xenopus tropicalis GN=march8
PE=2 SV=1
Length = 264
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
P + +CRIC E G+ L C C G L F H+ C +W + CE+CK E
Sbjct: 47 PSSQDICRICHCE-GDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKFE 102
>sp|A6NNE9|MARHB_HUMAN E3 ubiquitin-protein ligase MARCH11 OS=Homo sapiens GN=MARCH11 PE=2
SV=3
Length = 402
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 39/155 (25%), Positives = 64/155 (41%), Gaps = 30/155 (19%)
Query: 259 GEDIPEEEAVCRICF--IELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316
G + +C+ICF E GE L C C G + + H+ C +KW S +G+ TCE+C
Sbjct: 160 GHQHQHHQPICKICFQGAEQGE----LLNPCRCDGSVRYTHQLCLLKWISERGSWTCELC 215
Query: 317 -----------KQEVENLPVTLLRLQNVQ------------ASSLPDSGAQVTRYRVWQD 353
KQ + +++ ++ VQ AS + + Y VWQ
Sbjct: 216 CYRYHVIAIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQR 275
Query: 354 VPILVIVSMLAYFCFLEELLVGKMKSGAIAISLPF 388
IL + Y F++ + +G + A+ F
Sbjct: 276 KDILFQICYGMYG-FMDLVCIGLIVHEGAAVYRVF 309
>sp|A6P320|MARHB_RAT E3 ubiquitin-protein ligase MARCH11 OS=Rattus norvegicus GN=March11
PE=1 SV=1
Length = 398
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC------- 316
+ +C+ICF +G L C C G + + H+ C +KW S +G+ TCE+C
Sbjct: 161 HHQPICKICFQGAEQG--ELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVT 218
Query: 317 ----KQEVENLPVTLLRLQNVQ------------ASSLPDSGAQVTRYRVWQDVPILVIV 360
KQ + +++ ++ VQ AS + + Y VWQ IL +
Sbjct: 219 AIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQI 278
Query: 361 SMLAYFCFLEELLVGKMKSGAIAISLPF 388
Y F++ + +G + A+ F
Sbjct: 279 CYGMYG-FMDLVCIGLIVHEGAAVYRVF 305
>sp|O60103|DOA10_SCHPO ERAD-associated E3 ubiquitin-protein ligase doa10
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=doa10 PE=1 SV=1
Length = 1242
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321
++ +CR+C E G L C C G + + H+EC V+W CE+CK + E
Sbjct: 4 DDEICRVCRCE-GAPDSPLFHPCKCTGSIRYVHQECLVEWLGHSKKTHCELCKAKFE 59
>sp|Q8TCQ1|MARH1_HUMAN E3 ubiquitin-protein ligase MARCH1 OS=Homo sapiens GN=MARCH1 PE=1
SV=1
Length = 289
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
P + +CRIC E G+ L C C G L F H+ C +W + CE+CK +
Sbjct: 74 PSTQDICRICHCE-GDEESPLITPCRCTGTLRFVHQSCLHQWIKSSDTRCCELCKYD 129
>sp|Q8CBH7|MARHB_MOUSE E3 ubiquitin-protein ligase MARCH11 OS=Mus musculus GN=March11 PE=2
SV=2
Length = 400
Score = 45.4 bits (106), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 36/148 (24%), Positives = 62/148 (41%), Gaps = 26/148 (17%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC------- 316
+ +C+ICF +G L C C G + + H+ C +KW S +G+ TCE+C
Sbjct: 163 HHQPICKICFQGAEQG--ELLNPCRCDGSVRYTHQLCLLKWISERGSWTCELCCYRYHVT 220
Query: 317 ----KQEVENLPVTLLRLQNVQ------------ASSLPDSGAQVTRYRVWQDVPILVIV 360
KQ + +++ ++ VQ AS + + Y VWQ IL +
Sbjct: 221 AIKMKQPCQWQSISITLVEKVQMIAVILGSLFLIASVTWLLWSAFSPYAVWQRKDILFQI 280
Query: 361 SMLAYFCFLEELLVGKMKSGAIAISLPF 388
Y F++ + +G + A+ F
Sbjct: 281 CYGMYG-FMDLVCIGLIVHEGAAVYRVF 307
>sp|Q0P496|MARH4_DANRE E3 ubiquitin-protein ligase MARCH4 OS=Danio rerio GN=march4 PE=2
SV=1
Length = 421
Score = 45.1 bits (105), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 36/71 (50%), Gaps = 2/71 (2%)
Query: 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTL 327
+CRICF +G L C C G + H C +KW S +G+ +CE+C + + + ++
Sbjct: 142 LCRICFQGPEQG--ELLSPCRCSGSVRCTHEPCLIKWISERGSWSCELCYYKYQVIAIST 199
Query: 328 LRLQNVQASSL 338
QA SL
Sbjct: 200 KNPLQWQAISL 210
>sp|Q9P2E8|MARH4_HUMAN E3 ubiquitin-protein ligase MARCH4 OS=Homo sapiens GN=MARCH4 PE=2
SV=2
Length = 410
Score = 44.7 bits (104), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 35/71 (49%), Gaps = 2/71 (2%)
Query: 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTL 327
+CRICF +G L C C G + H+ C +KW S +G +CE+C + + ++
Sbjct: 162 LCRICFQGPEQG--ELLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAIST 219
Query: 328 LRLQNVQASSL 338
QA SL
Sbjct: 220 KNPLQWQAISL 230
>sp|Q3TZ87|MARH9_MOUSE E3 ubiquitin-protein ligase MARCH9 OS=Mus musculus GN=March9 PE=2
SV=1
Length = 348
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Query: 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTLL 328
CRICF +G L C C G + H+ C ++W S +G+ +CE+C + + L ++
Sbjct: 110 CRICFQGPEQG--ELLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAISTK 167
Query: 329 RLQNVQASSL 338
QA SL
Sbjct: 168 NPLQWQAISL 177
>sp|Q86YJ5|MARH9_HUMAN E3 ubiquitin-protein ligase MARCH9 OS=Homo sapiens GN=MARCH9 PE=1
SV=2
Length = 346
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)
Query: 269 CRICFI--ELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVT 326
CRICF E GE L C C G + H+ C ++W S +G+ +CE+C + + L ++
Sbjct: 110 CRICFQGPEQGE----LLSPCRCDGSVRCTHQPCLIRWISERGSWSCELCYFKYQVLAIS 165
Query: 327 LLRLQNVQASSL 338
QA SL
Sbjct: 166 TKNPLQWQAISL 177
>sp|Q99M02|MARH2_MOUSE E3 ubiquitin-protein ligase MARCH2 OS=Mus musculus GN=March2 PE=2
SV=1
Length = 246
Score = 43.9 bits (102), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 41/146 (28%), Positives = 55/146 (37%), Gaps = 24/146 (16%)
Query: 230 PTTPRVAEGSG---------TTSSNTFPSNTTDKKDDGGEDIPEEEAVCRICFIELGEGF 280
P +V E +G TS + +T + D D P CRIC G
Sbjct: 20 PAFSKVVEATGLGPPQYVAQVTSRDGRLLSTVIRALDSQSDCP----FCRIC--HEGANG 73
Query: 281 DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE--VENLPVTLLRLQNVQASSL 338
+ L CGC G L H+ C KW S CE+C E VE P L L
Sbjct: 74 ENLLSPCGCTGTLGAVHKSCLEKWLSSSNTSYCELCHTEFAVEKRPRPL-------TEWL 126
Query: 339 PDSGAQVTRYRVWQDVPILVIVSMLA 364
D G + + + D+ V ++ LA
Sbjct: 127 KDPGPRTEKRTLCCDMVCFVFITPLA 152
>sp|Q80TE3|MARH4_MOUSE E3 ubiquitin-protein ligase MARCH4 OS=Mus musculus GN=March4 PE=2
SV=3
Length = 409
Score = 43.5 bits (101), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 6/73 (8%)
Query: 268 VCRICFI--ELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPV 325
+CRICF E GE L C C G + H+ C +KW S +G +CE+C + + +
Sbjct: 161 LCRICFQGPEQGE----LLSPCRCDGSVKCTHQPCLIKWISERGCWSCELCYYKYHVIAI 216
Query: 326 TLLRLQNVQASSL 338
+ QA SL
Sbjct: 217 STKNPLQWQAISL 229
>sp|Q32L65|MARH2_BOVIN E3 ubiquitin-protein ligase MARCH2 OS=Bos taurus GN=MARCH2 PE=2
SV=1
Length = 245
Score = 43.1 bits (100), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 30/106 (28%), Positives = 44/106 (41%), Gaps = 11/106 (10%)
Query: 261 DIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE- 319
+ P + CRIC G ++L CGC G L H+ C +W S CE+C E
Sbjct: 56 ETPSDGPFCRIC--HEGANGESLLSPCGCSGTLGAVHKSCLERWLSSSNTSYCELCHTEF 113
Query: 320 -VENLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
VE +L L D G + + + DV + ++ LA
Sbjct: 114 AVEKRSRSLTEW-------LKDPGPRTEKRTLCCDVVCFLFITPLA 152
>sp|P27426|VIE1_BHV4D Probable E3 ubiquitin-protein ligase IE1 OS=Bovine herpesvirus 4
(strain DN-599) GN=IE1 PE=3 SV=1
Length = 285
Score = 42.0 bits (97), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Query: 262 IPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317
I EE C IC GE + C C G+L + H EC W S+ G K C+ C+
Sbjct: 125 IDEEGKQCWIC--RDGESLPEARY-CNCYGDLQYCHEECLKTWISMSGEKKCKFCQ 177
>sp|A0JM49|LTN1_XENTR E3 ubiquitin-protein ligase listerin OS=Xenopus tropicalis GN=ltn1
PE=2 SV=1
Length = 1696
Score = 42.0 bits (97), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 24/71 (33%), Positives = 33/71 (46%), Gaps = 12/71 (16%)
Query: 250 NTTDKKDDGGEDIPEEEAVCRICF-IELGEGFDALKMEC-GCKGELAFAHRECAVKWFSI 307
N DK+ +G ED C ICF + G + K C CK + H EC KWF+
Sbjct: 1633 NNVDKRFEGVED-------CMICFSVIHGSNYSLPKKACRTCKKKF---HSECLYKWFTS 1682
Query: 308 KGNKTCEVCKQ 318
TC +C++
Sbjct: 1683 SNKSTCPLCRE 1693
>sp|Q5PQ35|MARH2_XENLA E3 ubiquitin-protein ligase MARCH2 OS=Xenopus laevis GN=march2 PE=2
SV=1
Length = 246
Score = 40.8 bits (94), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE--VENLP 324
+CRIC E G G + L C C G L H+ C KW S CE+C E VE P
Sbjct: 63 ICRICH-EGGNG-ERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRP 119
>sp|Q28EX7|MARH2_XENTR E3 ubiquitin-protein ligase MARCH2 OS=Xenopus tropicalis GN=march2
PE=2 SV=1
Length = 246
Score = 40.8 bits (94), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE--VENLP 324
+CRIC E G G + L C C G L H+ C KW S CE+C E VE P
Sbjct: 63 ICRICH-EGGNG-ERLLSPCDCTGTLGTVHKTCLEKWLSSSNTSYCELCHTEFAVERRP 119
>sp|P32225|LAP_SWPVK E3 ubiquitin-protein ligase LAP OS=Swinepox virus (strain Kasza)
GN=LAP PE=3 SV=1
Length = 155
Score = 40.0 bits (92), Expect = 0.038, Method: Composition-based stats.
Identities = 17/54 (31%), Positives = 25/54 (46%), Gaps = 4/54 (7%)
Query: 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
+ VC IC + + K C CK E H EC KW ++C++C +E
Sbjct: 2 DPVCWIC----KDDYSIEKNYCNCKNEYKVVHDECMKKWIQYSRERSCKLCNKE 51
>sp|Q1LVZ2|MARH2_DANRE E3 ubiquitin-protein ligase MARCH2 OS=Danio rerio GN=march2 PE=2
SV=1
Length = 249
Score = 40.0 bits (92), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 24/57 (42%), Gaps = 9/57 (15%)
Query: 268 VCRICFIELGEGFDALKME-----CGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319
+CRIC EG D E C C G L H+ C KW S CE+C E
Sbjct: 63 ICRICH----EGQDVCNSEGLLSPCDCTGTLGTVHKSCLEKWLSSSNTSYCELCHTE 115
>sp|P90489|MIR2_HHV8P E3 ubiquitin-protein ligase MIR2 OS=Human herpesvirus 8 type P
(isolate GK18) GN=K5 PE=1 SV=1
Length = 256
Score = 40.0 bits (92), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 31/61 (50%), Gaps = 7/61 (11%)
Query: 260 EDIPE--EEAVCRICFIELG-EGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316
+D+ E E +C IC E+G EG C C GEL H +C W ++ N C++C
Sbjct: 4 KDVEEGVEGPICWICREEVGNEGIHP----CACTGELDVVHPQCLSTWLTVSRNTACQMC 59
Query: 317 K 317
+
Sbjct: 60 R 60
>sp|E1C231|LTN1_CHICK E3 ubiquitin-protein ligase listerin OS=Gallus gallus GN=LTN1 PE=3
SV=1
Length = 1766
Score = 39.3 bits (90), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 250 NTTDKKDDGGEDIPEEEAVCRICF-IELGEGFDALKMEC-GCKGELAFAHRECAVKWFSI 307
N DK+ +G ED C ICF + G + K C CK + H C KWF+
Sbjct: 1703 NNVDKRFEGIED-------CMICFSVIHGSNYSLPKKACRTCKKKF---HSACLYKWFTS 1752
Query: 308 KGNKTCEVCKQ 318
TC +C++
Sbjct: 1753 SNKSTCPLCRE 1763
>sp|Q6A009|LTN1_MOUSE E3 ubiquitin-protein ligase listerin OS=Mus musculus GN=Ltn1 PE=1
SV=3
Length = 1767
Score = 38.5 bits (88), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 250 NTTDKKDDGGEDIPEEEAVCRICF-IELGEGFDALKMEC-GCKGELAFAHRECAVKWFSI 307
N DK+ +G ED C ICF + G + K C CK + H C KWF+
Sbjct: 1704 NNVDKRFEGVED-------CMICFSVIHGFNYSLPKKACRTCKKKF---HSACLYKWFTS 1753
Query: 308 KGNKTCEVCKQ 318
TC +C++
Sbjct: 1754 SNKSTCPLCRE 1764
>sp|O94822|LTN1_HUMAN E3 ubiquitin-protein ligase listerin OS=Homo sapiens GN=LTN1 PE=1
SV=6
Length = 1766
Score = 38.5 bits (88), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 32/71 (45%), Gaps = 12/71 (16%)
Query: 250 NTTDKKDDGGEDIPEEEAVCRICF-IELGEGFDALKMEC-GCKGELAFAHRECAVKWFSI 307
N DK+ +G ED C ICF + G + K C CK + H C KWF+
Sbjct: 1703 NNVDKRFEGVED-------CMICFSVIHGFNYSLPKKACRTCKKKF---HSACLYKWFTS 1752
Query: 308 KGNKTCEVCKQ 318
TC +C++
Sbjct: 1753 SNKSTCPLCRE 1763
>sp|Q9LQM2|ATL81_ARATH RING-H2 finger protein ATL81 OS=Arabidopsis thaliana GN=ATL81 PE=2
SV=1
Length = 332
Score = 37.7 bits (86), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 39/92 (42%), Gaps = 13/92 (14%)
Query: 230 PTTPRVAEGSGTTSSNTFPSNTTDKKDDGGEDIPEEEAVCRICFIELGEGFDALKMECGC 289
P+ P G + +FP KD G + C IC E + D +++ C
Sbjct: 122 PSNPPENLGLDSKIIESFPEYPYSVKDHGTDQ-------CSICLTEFMDD-DTIRLISTC 173
Query: 290 KGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321
H C WF +G+KTC VC++E++
Sbjct: 174 NHSF---HTICIDLWF--EGHKTCPVCRRELD 200
>sp|P40318|DOA10_YEAST ERAD-associated E3 ubiquitin-protein ligase DOA10 OS=Saccharomyces
cerevisiae (strain ATCC 204508 / S288c) GN=SSM4 PE=1
SV=1
Length = 1319
Score = 37.7 bits (86), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 32/73 (43%), Gaps = 16/73 (21%)
Query: 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------GNKTCEVCKQ 318
A CRIC E E + L C C+G + + H C ++W + K + C++C
Sbjct: 37 ATCRICRGEATED-NPLFHPCKCRGSIKYMHESCLLEWVASKNIDISKPGADVKCDICHY 95
Query: 319 EV-------ENLP 324
+ EN+P
Sbjct: 96 PIQFKTIYAENMP 108
>sp|Q0IH10|MARH3_XENLA E3 ubiquitin-protein ligase MARCH3 OS=Xenopus laevis GN=march3 PE=2
SV=1
Length = 252
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC--KQEVE 321
+ +CRIC G + L C C G L HR C W S CE+C + VE
Sbjct: 65 NDHPMCRIC--HEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVE 122
Query: 322 NLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
P L+ L + G Q + ++ D+ + ++ LA
Sbjct: 123 RKPRPLVEW-------LRNPGPQHEKRTLFGDMVCFLFITPLA 158
>sp|Q8BRX9|MARH3_MOUSE E3 ubiquitin-protein ligase MARCH3 OS=Mus musculus GN=March3 PE=2
SV=1
Length = 218
Score = 37.7 bits (86), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC--KQEVE 321
+ +CRIC G + L C C G L HR C W S CE+C + VE
Sbjct: 66 NDRPMCRIC--HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVE 123
Query: 322 NLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
P L+ L + G Q + ++ D+ + ++ LA
Sbjct: 124 RKPRPLVEW-------LRNPGPQHEKRTLFGDMVCFLFITPLA 159
>sp|Q86UD3|MARH3_HUMAN E3 ubiquitin-protein ligase MARCH3 OS=Homo sapiens GN=MARCH3 PE=2
SV=1
Length = 253
Score = 37.4 bits (85), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC--KQEVE 321
+ +CRIC G + L C C G L HR C W S CE+C + VE
Sbjct: 66 NDRPMCRIC--HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVE 123
Query: 322 NLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
P L+ L + G Q + ++ D+ + ++ LA
Sbjct: 124 RKPRPLVEW-------LRNPGPQHEKRTLFGDMVCFLFITPLA 159
>sp|Q5XIE5|MARH3_RAT E3 ubiquitin-protein ligase MARCH3 OS=Rattus norvegicus GN=March3
PE=1 SV=1
Length = 253
Score = 37.4 bits (85), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC--KQEVE 321
+ +CRIC G + L C C G L HR C W S CE+C + VE
Sbjct: 66 NDRPMCRIC--HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVE 123
Query: 322 NLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
P L+ L + G Q + ++ D+ + ++ LA
Sbjct: 124 RKPRPLVEW-------LRNPGPQHEKRTLFGDMVCFLFITPLA 159
>sp|A0JN69|MARH3_BOVIN E3 ubiquitin-protein ligase MARCH3 OS=Bos taurus GN=MARCH3 PE=2
SV=1
Length = 253
Score = 37.4 bits (85), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC--KQEVE 321
+ +CRIC G + L C C G L HR C W S CE+C + VE
Sbjct: 66 NDRPMCRIC--HEGSSQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFAVE 123
Query: 322 NLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
P L+ L + G Q + ++ D+ + ++ LA
Sbjct: 124 RKPRPLVEW-------LRNPGPQHEKRTLFGDMVCFLFITPLA 159
>sp|Q68FA7|MARH3_XENTR E3 ubiquitin-protein ligase MARCH3 OS=Xenopus tropicalis GN=march3
PE=2 SV=1
Length = 251
Score = 37.4 bits (85), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 28/103 (27%), Positives = 42/103 (40%), Gaps = 11/103 (10%)
Query: 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC--KQEVE 321
+ +CRIC G + L C C G L HR C W S CE+C + VE
Sbjct: 64 NDRPMCRIC--HEGSTQEDLLSPCECTGTLGTIHRSCLEHWLSSSNTSYCELCHFRFSVE 121
Query: 322 NLPVTLLRLQNVQASSLPDSGAQVTRYRVWQDVPILVIVSMLA 364
P L+ L + G Q + ++ D+ + ++ LA
Sbjct: 122 RKPRPLVEW-------LRNPGPQHEKRTLFGDMVCFLFITPLA 157
>sp|Q7L0R7|RNF44_HUMAN RING finger protein 44 OS=Homo sapiens GN=RNF44 PE=2 SV=1
Length = 432
Score = 37.4 bits (85), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 31/60 (51%), Gaps = 7/60 (11%)
Query: 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324
E+ +C +CF + E L++ C E H +C KW +K N+TC +C+ + +P
Sbjct: 376 EQTLCVVCFSDF-EARQLLRV-LPCNHEF---HTKCVDKW--LKANRTCPICRADASEVP 428
>sp|Q9Q8T2|LAP_RFVKA E3 ubiquitin-protein ligase LAP OS=Rabbit fibroma virus (strain
Kasza) GN=s153R PE=3 SV=1
Length = 201
Score = 37.0 bits (84), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 29/59 (49%), Gaps = 6/59 (10%)
Query: 261 DIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--GNKTCEVCK 317
D+ + C IC E D ++ C C+G+ H+EC +W + NK+C +C+
Sbjct: 9 DVSLVDKCCWIC----KESCDVVRNYCKCRGDNKIVHKECLEEWINTDTVKNKSCAICE 63
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.131 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 186,553,605
Number of Sequences: 539616
Number of extensions: 7892852
Number of successful extensions: 21617
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 48
Number of HSP's successfully gapped in prelim test: 89
Number of HSP's that attempted gapping in prelim test: 21492
Number of HSP's gapped (non-prelim): 201
length of query: 512
length of database: 191,569,459
effective HSP length: 122
effective length of query: 390
effective length of database: 125,736,307
effective search space: 49037159730
effective search space used: 49037159730
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)