Query 010378
Match_columns 512
No_of_seqs 244 out of 780
Neff 3.9
Searched_HMMs 46136
Date Thu Mar 28 23:50:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010378.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010378hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1609 Protein involved in mR 99.8 1.6E-19 3.5E-24 177.1 6.9 205 256-460 68-282 (323)
2 PHA02825 LAP/PHD finger-like p 99.6 7.5E-16 1.6E-20 143.8 7.7 63 260-326 2-64 (162)
3 smart00744 RINGv The RING-vari 99.6 7E-16 1.5E-20 118.4 3.5 49 268-317 1-49 (49)
4 PHA02862 5L protein; Provision 99.6 2.2E-15 4.8E-20 138.9 5.0 56 266-325 2-57 (156)
5 COG5183 SSM4 Protein involved 99.5 6E-15 1.3E-19 162.5 7.8 64 266-330 12-75 (1175)
6 PF12906 RINGv: RING-variant d 99.5 2.6E-15 5.7E-20 114.3 2.1 47 269-316 1-47 (47)
7 KOG3053 Uncharacterized conser 99.2 6.9E-12 1.5E-16 124.9 3.4 65 263-327 17-88 (293)
8 PF13639 zf-RING_2: Ring finge 97.9 4.5E-06 9.7E-11 61.7 2.0 43 268-317 2-44 (44)
9 KOG4628 Predicted E3 ubiquitin 97.9 9.3E-06 2E-10 84.8 3.7 50 267-322 230-279 (348)
10 PLN03208 E3 ubiquitin-protein 97.1 0.00056 1.2E-08 66.7 4.6 51 265-323 17-81 (193)
11 COG5243 HRD1 HRD ubiquitin lig 97.1 0.00045 9.7E-09 73.1 3.8 51 263-320 284-344 (491)
12 PHA02929 N1R/p28-like protein; 96.9 0.00093 2E-08 66.9 4.4 53 265-324 173-230 (238)
13 PF13920 zf-C3HC4_3: Zinc fing 96.9 0.00085 1.8E-08 51.0 2.8 47 266-322 2-49 (50)
14 PF12678 zf-rbx1: RING-H2 zinc 96.8 0.00098 2.1E-08 55.0 3.2 44 267-317 20-73 (73)
15 COG5540 RING-finger-containing 96.8 0.0011 2.4E-08 68.7 3.7 51 265-321 322-372 (374)
16 cd00162 RING RING-finger (Real 96.7 0.0017 3.6E-08 45.7 3.0 44 268-319 1-44 (45)
17 PF09679 TraQ: Type-F conjugat 96.6 0.001 2.2E-08 57.6 2.0 47 409-461 16-62 (93)
18 PF11793 FANCL_C: FANCL C-term 96.5 0.001 2.2E-08 54.7 1.3 53 266-321 2-66 (70)
19 KOG0802 E3 ubiquitin ligase [P 96.3 0.0022 4.7E-08 70.4 2.8 49 264-319 289-339 (543)
20 KOG0823 Predicted E3 ubiquitin 96.3 0.0076 1.6E-07 60.3 5.8 56 263-326 44-100 (230)
21 smart00184 RING Ring finger. E 96.2 0.0048 1E-07 41.8 2.9 39 269-316 1-39 (39)
22 PF12861 zf-Apc11: Anaphase-pr 96.1 0.007 1.5E-07 52.3 4.0 53 266-322 21-83 (85)
23 PHA02926 zinc finger-like prot 95.8 0.0078 1.7E-07 60.3 3.6 56 265-325 169-234 (242)
24 PF00097 zf-C3HC4: Zinc finger 95.4 0.012 2.6E-07 42.5 2.5 41 269-316 1-41 (41)
25 COG5219 Uncharacterized conser 95.3 0.0064 1.4E-07 70.5 0.9 55 265-322 1468-1524(1525)
26 KOG1493 Anaphase-promoting com 94.8 0.012 2.6E-07 50.4 1.1 51 268-322 22-82 (84)
27 KOG0317 Predicted E3 ubiquitin 94.7 0.038 8.3E-07 57.0 4.6 61 258-328 231-291 (293)
28 KOG0828 Predicted E3 ubiquitin 94.0 0.034 7.3E-07 61.0 2.6 53 263-321 568-634 (636)
29 smart00504 Ubox Modified RING 93.9 0.066 1.4E-06 41.5 3.5 45 267-321 2-46 (63)
30 PF13923 zf-C3HC4_2: Zinc fing 93.9 0.043 9.4E-07 39.7 2.2 38 269-316 1-39 (39)
31 KOG4265 Predicted E3 ubiquitin 93.2 0.085 1.8E-06 55.8 3.9 52 262-322 286-337 (349)
32 PF14634 zf-RING_5: zinc-RING 93.0 0.084 1.8E-06 39.3 2.5 44 268-318 1-44 (44)
33 KOG0827 Predicted E3 ubiquitin 91.8 0.11 2.3E-06 55.8 2.5 47 266-317 4-52 (465)
34 TIGR00599 rad18 DNA repair pro 91.3 0.12 2.6E-06 55.6 2.2 48 265-322 25-72 (397)
35 PF14570 zf-RING_4: RING/Ubox 87.6 0.39 8.5E-06 37.7 2.0 46 269-321 1-48 (48)
36 KOG0825 PHD Zn-finger protein 86.5 0.68 1.5E-05 53.7 3.9 54 265-325 122-175 (1134)
37 KOG4445 Uncharacterized conser 86.4 0.28 6E-06 51.4 0.8 53 266-323 115-188 (368)
38 KOG1785 Tyrosine kinase negati 86.3 0.28 6E-06 53.1 0.8 49 267-323 370-418 (563)
39 KOG0804 Cytoplasmic Zn-finger 85.7 0.43 9.4E-06 52.1 1.9 48 265-321 174-222 (493)
40 KOG1734 Predicted RING-contain 85.6 0.23 4.9E-06 51.4 -0.3 54 265-323 223-283 (328)
41 PF05883 Baculo_RING: Baculovi 85.1 0.51 1.1E-05 44.2 1.8 43 265-307 25-68 (134)
42 KOG1645 RING-finger-containing 84.8 0.72 1.6E-05 50.0 3.0 62 265-331 3-69 (463)
43 COG5194 APC11 Component of SCF 80.5 1.9 4E-05 37.6 3.3 27 294-322 56-82 (88)
44 KOG0320 Predicted E3 ubiquitin 79.6 2.9 6.2E-05 41.1 4.7 60 254-321 119-178 (187)
45 KOG2164 Predicted E3 ubiquitin 79.1 71 0.0015 36.0 15.5 50 266-323 186-238 (513)
46 PF04564 U-box: U-box domain; 77.8 1.4 3E-05 36.2 1.7 49 265-322 3-51 (73)
47 KOG1952 Transcription factor N 77.5 1.1 2.4E-05 52.3 1.4 60 263-326 188-252 (950)
48 PLN02189 cellulose synthase 75.7 1.9 4.1E-05 51.5 2.7 53 265-322 33-88 (1040)
49 PF15227 zf-C3HC4_4: zinc fing 75.6 2 4.3E-05 32.1 1.9 40 269-316 1-42 (42)
50 PF13445 zf-RING_UBOX: RING-ty 75.5 2.3 4.9E-05 32.4 2.2 40 269-314 1-43 (43)
51 KOG2177 Predicted E3 ubiquitin 73.9 1.5 3.2E-05 40.8 1.0 45 264-318 11-55 (386)
52 PF10367 Vps39_2: Vacuolar sor 72.8 1.5 3.2E-05 37.0 0.7 33 265-303 77-109 (109)
53 TIGR00570 cdk7 CDK-activating 70.0 4.1 8.8E-05 42.9 3.2 52 266-323 3-56 (309)
54 KOG0801 Predicted E3 ubiquitin 68.6 2.6 5.7E-05 41.1 1.4 25 265-289 176-200 (205)
55 KOG1428 Inhibitor of type V ad 68.2 4.1 8.8E-05 50.6 3.1 54 265-323 3485-3546(3738)
56 KOG1039 Predicted E3 ubiquitin 67.4 4.2 9.1E-05 43.3 2.7 58 264-326 159-226 (344)
57 COG5574 PEX10 RING-finger-cont 67.3 4.9 0.00011 41.5 3.1 58 259-325 208-266 (271)
58 KOG1941 Acetylcholine receptor 65.9 1.6 3.4E-05 47.5 -0.8 51 263-318 362-413 (518)
59 PLN02436 cellulose synthase A 65.7 4.5 9.7E-05 48.7 2.8 54 265-323 35-91 (1094)
60 PF07800 DUF1644: Protein of u 64.8 9.2 0.0002 37.0 4.2 55 265-324 1-94 (162)
61 COG5034 TNG2 Chromatin remodel 63.6 3.2 7E-05 42.7 1.0 30 288-319 241-270 (271)
62 PLN02195 cellulose synthase A 63.4 6.6 0.00014 46.9 3.6 51 265-321 5-59 (977)
63 PLN02400 cellulose synthase 63.4 4.6 9.9E-05 48.6 2.3 53 265-323 35-91 (1085)
64 KOG0825 PHD Zn-finger protein 63.1 3.3 7.1E-05 48.4 1.1 54 260-317 209-264 (1134)
65 KOG2930 SCF ubiquitin ligase, 62.7 5.4 0.00012 36.3 2.1 27 294-322 83-109 (114)
66 PF14569 zf-UDP: Zinc-binding 62.1 7.6 0.00016 33.7 2.8 53 265-323 8-64 (80)
67 PLN02915 cellulose synthase A 61.8 7.6 0.00017 46.7 3.7 52 265-322 14-69 (1044)
68 PLN02638 cellulose synthase A 60.0 7.8 0.00017 46.7 3.4 53 265-323 16-72 (1079)
69 PF10272 Tmpp129: Putative tra 57.5 12 0.00027 40.1 4.1 38 285-325 307-355 (358)
70 PF08746 zf-RING-like: RING-li 55.9 6 0.00013 30.0 1.1 21 296-316 23-43 (43)
71 COG5236 Uncharacterized conser 55.7 14 0.00029 40.0 4.0 56 262-325 57-112 (493)
72 PRK13727 conjugal transfer pil 54.7 7.1 0.00015 33.6 1.4 48 409-462 16-63 (80)
73 KOG0956 PHD finger protein AF1 53.2 13 0.00027 43.3 3.5 119 194-324 53-185 (900)
74 PF05290 Baculo_IE-1: Baculovi 51.7 9.8 0.00021 36.0 2.0 56 265-323 79-134 (140)
75 KOG2927 Membrane component of 51.4 16 0.00035 39.4 3.7 61 350-412 189-249 (372)
76 KOG4583 Membrane-associated ER 50.6 33 0.00072 37.0 5.8 74 405-491 260-337 (391)
77 TIGR02741 TraQ type-F conjugat 48.6 17 0.00037 31.3 2.8 48 409-462 16-63 (80)
78 KOG0802 E3 ubiquitin ligase [P 48.4 10 0.00022 42.2 1.8 53 256-322 469-521 (543)
79 COG5175 MOT2 Transcriptional r 46.9 18 0.0004 39.0 3.3 54 265-325 13-68 (480)
80 KOG1002 Nucleotide excision re 45.9 11 0.00024 42.7 1.6 49 265-321 535-586 (791)
81 COG5432 RAD18 RING-finger-cont 43.9 10 0.00023 40.0 1.0 48 266-323 25-72 (391)
82 TIGR02163 napH_ ferredoxin-typ 43.8 18 0.0004 36.3 2.7 55 357-411 7-65 (255)
83 KOG3970 Predicted E3 ubiquitin 43.0 20 0.00042 36.9 2.7 49 266-320 50-104 (299)
84 KOG4692 Predicted E3 ubiquitin 42.9 16 0.00035 39.6 2.2 48 265-322 421-468 (489)
85 PRK09477 napH quinol dehydroge 42.0 21 0.00045 36.2 2.7 28 386-413 47-74 (271)
86 PF01146 Caveolin: Caveolin; 41.8 22 0.00048 33.9 2.7 25 383-412 77-101 (148)
87 COG5152 Uncharacterized conser 39.6 18 0.00039 36.5 1.8 55 254-321 187-241 (259)
88 COG2995 PqiA Uncharacterized p 39.3 14 0.00031 40.3 1.2 81 385-466 272-354 (418)
89 KOG4323 Polycomb-like PHD Zn-f 38.9 14 0.00031 40.9 1.1 56 266-324 168-229 (464)
90 KOG4172 Predicted E3 ubiquitin 38.3 12 0.00026 30.8 0.3 49 267-323 8-56 (62)
91 KOG0287 Postreplication repair 37.1 14 0.0003 39.9 0.6 47 266-322 23-69 (442)
92 KOG0956 PHD finger protein AF1 36.2 21 0.00046 41.5 1.9 55 267-324 6-76 (900)
93 PF10947 DUF2628: Protein of u 36.0 58 0.0013 28.3 4.3 57 404-461 50-106 (108)
94 PF04641 Rtf2: Rtf2 RING-finge 35.5 50 0.0011 33.4 4.3 53 264-324 111-164 (260)
95 PF11712 Vma12: Endoplasmic re 32.8 42 0.00091 30.9 3.0 32 431-462 105-136 (142)
96 PF01440 Gemini_AL2: Geminivir 31.2 8.3 0.00018 36.2 -1.9 32 282-316 32-63 (134)
97 PF13571 DUF4133: Domain of un 30.9 58 0.0013 29.2 3.4 46 406-453 16-61 (96)
98 PF14012 DUF4229: Protein of u 30.6 72 0.0016 26.5 3.7 49 409-462 1-55 (69)
99 KOG3817 Uncharacterized conser 30.3 1.9E+02 0.0041 31.8 7.6 20 389-408 167-186 (452)
100 PF03839 Sec62: Translocation 29.4 79 0.0017 32.1 4.5 55 357-413 117-171 (224)
101 KOG1973 Chromatin remodeling p 28.8 26 0.00057 35.9 1.0 54 263-321 216-270 (274)
102 PRK12652 putative monovalent c 28.0 92 0.002 33.4 5.0 23 434-456 258-280 (357)
103 KOG2735 Phosphatidylserine syn 27.9 98 0.0021 34.3 5.1 36 367-402 382-417 (466)
104 PF07331 TctB: Tripartite tric 27.0 2.4E+02 0.0052 25.0 6.8 20 414-433 119-138 (141)
105 KOG4443 Putative transcription 26.8 30 0.00065 40.0 1.1 33 283-317 34-75 (694)
106 PF15013 CCSMST1: CCSMST1 fami 26.5 38 0.00082 29.2 1.4 21 349-369 29-50 (77)
107 KOG0955 PHD finger protein BR1 26.0 26 0.00057 42.5 0.5 54 265-321 218-271 (1051)
108 PF11712 Vma12: Endoplasmic re 25.6 88 0.0019 28.9 3.8 36 358-399 85-122 (142)
109 KOG3972 Predicted membrane pro 25.6 1.5E+02 0.0033 30.3 5.6 70 352-421 26-95 (252)
110 KOG3899 Uncharacterized conser 24.9 50 0.0011 35.2 2.2 37 287-326 323-370 (381)
111 PF06570 DUF1129: Protein of u 24.5 2.5E+02 0.0053 27.3 6.8 19 386-404 117-135 (206)
112 PF04995 CcmD: Heme exporter p 24.4 72 0.0016 24.4 2.5 21 407-430 5-26 (46)
113 PF11395 DUF2873: Protein of u 21.9 59 0.0013 24.9 1.5 13 357-369 19-31 (43)
114 KOG1074 Transcriptional repres 21.6 6.7E+02 0.015 30.6 10.4 14 311-324 666-682 (958)
115 PRK10263 DNA translocase FtsK; 21.2 1.2E+02 0.0026 38.0 4.7 40 421-461 148-187 (1355)
116 PF02592 DUF165: Uncharacteriz 20.6 3.4E+02 0.0074 25.0 6.6 29 436-464 67-95 (145)
117 PRK05978 hypothetical protein; 20.3 3.3E+02 0.0071 26.1 6.5 14 310-323 52-65 (148)
118 TIGR00927 2A1904 K+-dependent 20.0 2E+02 0.0043 35.3 6.0 18 376-393 997-1014(1096)
No 1
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.78 E-value=1.6e-19 Score=177.13 Aligned_cols=205 Identities=28% Similarity=0.395 Sum_probs=144.2
Q ss_pred CCCCCCCCCCCCeeeEcccccCCCC-CceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecceeeeeecccc
Q 010378 256 DDGGEDIPEEEAVCRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTLLRLQNVQ 334 (512)
Q Consensus 256 ~~~~Edi~eee~vCRICl~e~~e~~-~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv~llr~q~~~ 334 (512)
++..++.+.++..||||+.+..+.. ..++.||.|+|+++|||+.|+++|+..+++..||+|++.|.+..+...+.....
T Consensus 68 ~~~~~~~~~~~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~~~~~~~~~~~~~~ 147 (323)
T KOG1609|consen 68 EESLEESPSSGPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFINVGTKLKPLIVIS 147 (323)
T ss_pred CCccccCCCCCCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccceecceeecceeehh
Confidence 4455555666799999998764321 178999999999999999999999999999999999999999876654443221
Q ss_pred cCCCCCCc---ccc-cccccccccchhhhhHHHHHHHHHHHHHhhccccceeeecc-hhHHHHhHHHHhhHhhhhhhhHH
Q 010378 335 ASSLPDSG---AQV-TRYRVWQDVPILVIVSMLAYFCFLEELLVGKMKSGAIAISL-PFSCILGLLASTTATTMVRKSFI 409 (512)
Q Consensus 335 t~n~~~~~---~~~-~~~r~Wq~vpvLViIsmLayFcfLEqLlv~~~g~~Aiaisl-Pfs~iLGll~s~~a~~mv~~~yi 409 (512)
....+... ... .....|..+.+.+.+..+.++++.+..+...++........ +..+.+|++.....+.+....|+
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 227 (323)
T KOG1609|consen 148 KVRSGALSERTLSGMILLKVALLVAIIVSVLPLLLGLLFELVLGVPSLVVESPLANPLALVALGLLGFKIWIFIILSGYI 227 (323)
T ss_pred hhhhHhhhheeeehhhhhhhhhhheeeEEeehhhhhhhHHHhccccccccCCCccCchhheeecceechHHHHHHHHHHH
Confidence 11110010 000 11123333333344456777888777766655554444444 55677999999999999999999
Q ss_pred HHHHHHHHHHHHHhHhHhhhhccc---hhhhHhhhh-hhccceeeeehhHHHHHH
Q 010378 410 WLYAFIQFGLVVLSAHLFYSLLHM---QAVIVVLLS-TFAGFGITMAGTSILTDA 460 (512)
Q Consensus 410 W~yA~~qf~~vvl~~hifY~~~~~---~~v~ai~la-~~~Gfgi~m~~~s~~~~~ 460 (512)
|.+..+.+.++.++..+|+.+..+ ..+....+. .+.|++++.+...+++..
T Consensus 228 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 282 (323)
T KOG1609|consen 228 FILKSLKVKLVLIRAVIFLLLIKVVLAAVVILQLLLQRLVGYLLANSLTPLYIVS 282 (323)
T ss_pred HHHHHHHHHHhHhhhhccchhhhhhhhhHHHHHHHHhcceeEEEecccceeeecc
Confidence 999999999999988888887777 333333333 388999999887776664
No 2
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=99.62 E-value=7.5e-16 Score=143.76 Aligned_cols=63 Identities=29% Similarity=0.627 Sum_probs=54.2
Q ss_pred CCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeeccee
Q 010378 260 EDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVT 326 (512)
Q Consensus 260 Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv~ 326 (512)
||..+.++.||||+++.. .+..||+|+|+++|||++||++|+..+++..||+|+++|......
T Consensus 2 ~~~s~~~~~CRIC~~~~~----~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i~~~~ 64 (162)
T PHA02825 2 EDVSLMDKCCWICKDEYD----VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNIKKNY 64 (162)
T ss_pred CCcCCCCCeeEecCCCCC----CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEEEEec
Confidence 455667899999997642 356899999999999999999999999999999999999977543
No 3
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=99.59 E-value=7e-16 Score=118.43 Aligned_cols=49 Identities=51% Similarity=1.146 Sum_probs=44.8
Q ss_pred eeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccc
Q 010378 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317 (512)
Q Consensus 268 vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk 317 (512)
+||||+++ .++++++++||.|+|+++|||++||++|+..+++.+||+|+
T Consensus 1 ~CrIC~~~-~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDE-GDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCC-CCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 59999983 34678899999999999999999999999999999999996
No 4
>PHA02862 5L protein; Provisional
Probab=99.56 E-value=2.2e-15 Score=138.92 Aligned_cols=56 Identities=27% Similarity=0.608 Sum_probs=49.1
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecce
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPV 325 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv 325 (512)
...||||+++.++ ...||.|+|+++|||++||++|+..+++..||+|+++|...+.
T Consensus 2 ~diCWIC~~~~~e----~~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~Ik~~ 57 (156)
T PHA02862 2 SDICWICNDVCDE----RNNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYNIKKT 57 (156)
T ss_pred CCEEEEecCcCCC----CcccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEEEEEc
Confidence 4689999977532 2699999999999999999999999999999999999987544
No 5
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=99.55 E-value=6e-15 Score=162.46 Aligned_cols=64 Identities=31% Similarity=0.696 Sum_probs=57.3
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecceeeeee
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTLLRL 330 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv~llr~ 330 (512)
...||||+.|.. .+++|..||+|.|+.+|+|++||..|+..+++++|||||++|+...++...+
T Consensus 12 ~~~CRICr~e~~-~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~Fk~IY~e~m 75 (1175)
T COG5183 12 KRSCRICRTEDI-RDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYKFKDIYKEDM 75 (1175)
T ss_pred chhceeecCCCC-CCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceeeeeeecccCC
Confidence 479999998864 6789999999999999999999999999999999999999999987764443
No 6
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=99.53 E-value=2.6e-15 Score=114.33 Aligned_cols=47 Identities=40% Similarity=1.032 Sum_probs=37.8
Q ss_pred eeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccc
Q 010378 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (512)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEIC 316 (512)
||||++++.+ +++|+.||.|+|+++|||++||++|+..+++.+||+|
T Consensus 1 CrIC~~~~~~-~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEE-DEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SS-SS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCC-CCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 9999988643 4489999999999999999999999999999999998
No 7
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.20 E-value=6.9e-12 Score=124.86 Aligned_cols=65 Identities=28% Similarity=0.596 Sum_probs=53.7
Q ss_pred CCCCCeeeEcccccCCCC-CceeeccccCCccccccHHHHHHHHHHcC------Cccccccccceeecceee
Q 010378 263 PEEEAVCRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIKG------NKTCEVCKQEVENLPVTL 327 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~-~~Li~PC~CKGsLk~VH~~CL~kW~~~kg------~~~CEICk~~y~nlpv~l 327 (512)
.|.|+.||||+..+++.. ..++.||.|+|+.|+||+.||.+|+.+|. ...|+.|+.+|..+-+.+
T Consensus 17 ~e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYiiv~P~l 88 (293)
T KOG3053|consen 17 QELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYIIVFPQL 88 (293)
T ss_pred cccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchheeecccc
Confidence 346799999998764332 24899999999999999999999998874 379999999999875544
No 8
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=97.94 E-value=4.5e-06 Score=61.74 Aligned_cols=43 Identities=35% Similarity=0.956 Sum_probs=35.4
Q ss_pred eeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccc
Q 010378 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317 (512)
Q Consensus 268 vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk 317 (512)
.|-||+++..+++....++|. +.+|.+|+.+|+..+ ..|++|+
T Consensus 2 ~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~~~~~~--~~CP~CR 44 (44)
T PF13639_consen 2 ECPICLEEFEDGEKVVKLPCG-----HVFHRSCIKEWLKRN--NSCPVCR 44 (44)
T ss_dssp CETTTTCBHHTTSCEEEETTS-----EEEEHHHHHHHHHHS--SB-TTTH
T ss_pred CCcCCChhhcCCCeEEEccCC-----CeeCHHHHHHHHHhC--CcCCccC
Confidence 699999888655667788875 899999999999885 5999995
No 9
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.87 E-value=9.3e-06 Score=84.81 Aligned_cols=50 Identities=24% Similarity=0.646 Sum_probs=43.4
Q ss_pred CeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
..|-||+++..+++..-++||+ +.+|..|+..|+... .+.|++||+....
T Consensus 230 ~~CaIClEdY~~GdklRiLPC~-----H~FH~~CIDpWL~~~-r~~CPvCK~di~~ 279 (348)
T KOG4628|consen 230 DTCAICLEDYEKGDKLRILPCS-----HKFHVNCIDPWLTQT-RTFCPVCKRDIRT 279 (348)
T ss_pred ceEEEeecccccCCeeeEecCC-----CchhhccchhhHhhc-CccCCCCCCcCCC
Confidence 6999999988766677789999 889999999999876 5679999997654
No 10
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=97.10 E-value=0.00056 Score=66.71 Aligned_cols=51 Identities=27% Similarity=0.603 Sum_probs=40.7
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc--------------CCccccccccceeec
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------------GNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k--------------g~~~CEICk~~y~nl 323 (512)
++..|-||++.. .++.+.+|. +.++..|+.+|+..+ +...|++|+..+..-
T Consensus 17 ~~~~CpICld~~---~dPVvT~CG-----H~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~ 81 (193)
T PLN03208 17 GDFDCNICLDQV---RDPVVTLCG-----HLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEA 81 (193)
T ss_pred CccCCccCCCcC---CCcEEcCCC-----chhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChh
Confidence 568999999764 457888987 889999999998632 346899999998653
No 11
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=97.06 E-value=0.00045 Score=73.05 Aligned_cols=51 Identities=25% Similarity=0.716 Sum_probs=40.5
Q ss_pred CCCCCeeeEcccccCCCC----------CceeeccccCCccccccHHHHHHHHHHcCCccccccccce
Q 010378 263 PEEEAVCRICFIELGEGF----------DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEV 320 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~----------~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y 320 (512)
...+..|-||++|.-+.+ .+-.+||. +..|-.||+.|+..+ .+|+||+..+
T Consensus 284 ~n~D~~C~ICmde~~h~~~~~~~~~~~~~pKrLpCG-----HilHl~CLknW~ERq--QTCPICr~p~ 344 (491)
T COG5243 284 TNSDRTCTICMDEMFHPDHEPLPRGLDMTPKRLPCG-----HILHLHCLKNWLERQ--QTCPICRRPV 344 (491)
T ss_pred cCCCCeEEEecccccCCCCccCcccccCCccccccc-----ceeeHHHHHHHHHhc--cCCCcccCcc
Confidence 345689999998854322 35689999 899999999999764 5899999984
No 12
>PHA02929 N1R/p28-like protein; Provisional
Probab=96.91 E-value=0.00093 Score=66.94 Aligned_cols=53 Identities=21% Similarity=0.460 Sum_probs=39.6
Q ss_pred CCCeeeEcccccCCCCC-----ceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecc
Q 010378 265 EEAVCRICFIELGEGFD-----ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~-----~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlp 324 (512)
.+..|-||++...+..- ....+|. +.+|..|+.+|+.. ..+|++|+..+..+.
T Consensus 173 ~~~eC~ICle~~~~~~~~~~~~~vl~~C~-----H~FC~~CI~~Wl~~--~~tCPlCR~~~~~v~ 230 (238)
T PHA02929 173 KDKECAICMEKVYDKEIKNMYFGILSNCN-----HVFCIECIDIWKKE--KNTCPVCRTPFISVI 230 (238)
T ss_pred CCCCCccCCcccccCccccccceecCCCC-----CcccHHHHHHHHhc--CCCCCCCCCEeeEEe
Confidence 35799999987543210 2345676 89999999999965 568999999988653
No 13
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=96.86 E-value=0.00085 Score=50.97 Aligned_cols=47 Identities=32% Similarity=0.783 Sum_probs=37.7
Q ss_pred CCeeeEcccccCCCCCceeeccccCCcccc-ccHHHHHHHHHHcCCccccccccceee
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+..|.||++.. .+....||+ +. +...|+.+|+. ....|++|+.++..
T Consensus 2 ~~~C~iC~~~~---~~~~~~pCg-----H~~~C~~C~~~~~~--~~~~CP~Cr~~i~~ 49 (50)
T PF13920_consen 2 DEECPICFENP---RDVVLLPCG-----HLCFCEECAERLLK--RKKKCPICRQPIES 49 (50)
T ss_dssp HSB-TTTSSSB---SSEEEETTC-----EEEEEHHHHHHHHH--TTSBBTTTTBB-SE
T ss_pred cCCCccCCccC---CceEEeCCC-----ChHHHHHHhHHhcc--cCCCCCcCChhhcC
Confidence 46899999763 457899998 66 89999999998 67899999998764
No 14
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=96.83 E-value=0.00098 Score=55.04 Aligned_cols=44 Identities=27% Similarity=0.647 Sum_probs=31.3
Q ss_pred CeeeEcccccCCC-------C--C-ceeeccccCCccccccHHHHHHHHHHcCCccccccc
Q 010378 267 AVCRICFIELGEG-------F--D-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCK 317 (512)
Q Consensus 267 ~vCRICl~e~~e~-------~--~-~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk 317 (512)
..|-||+....+. + - ....+|+ +.+|..||.+|+..+ .+|++|+
T Consensus 20 d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR 73 (73)
T PF12678_consen 20 DNCAICREPLEDPCPECQAPQDECPIVWGPCG-----HIFHFHCISQWLKQN--NTCPLCR 73 (73)
T ss_dssp SBETTTTSBTTSTTCCHHHCTTTS-EEEETTS-----EEEEHHHHHHHHTTS--SB-TTSS
T ss_pred CcccccChhhhChhhhhcCCccccceEecccC-----CCEEHHHHHHHHhcC--CcCCCCC
Confidence 3599999877321 1 1 2345786 899999999999654 4999996
No 15
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.78 E-value=0.0011 Score=68.68 Aligned_cols=51 Identities=22% Similarity=0.511 Sum_probs=41.2
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
.+-.|-||+...-..+....+||. +-+|..|+.||+.-. +..|++|+.+..
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~-----H~FH~~Cv~kW~~~y-~~~CPvCrt~iP 372 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCD-----HRFHVGCVDKWLLGY-SNKCPVCRTAIP 372 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccC-----ceechhHHHHHHhhh-cccCCccCCCCC
Confidence 568999999877544557789999 789999999999732 358999998754
No 16
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=96.67 E-value=0.0017 Score=45.73 Aligned_cols=44 Identities=32% Similarity=0.810 Sum_probs=33.3
Q ss_pred eeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccc
Q 010378 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (512)
Q Consensus 268 vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~ 319 (512)
.|.||++.. .......+|. +.+|..|+.+|+.. ++..|++|+..
T Consensus 1 ~C~iC~~~~--~~~~~~~~C~-----H~~c~~C~~~~~~~-~~~~Cp~C~~~ 44 (45)
T cd00162 1 ECPICLEEF--REPVVLLPCG-----HVFCRSCIDKWLKS-GKNTCPLCRTP 44 (45)
T ss_pred CCCcCchhh--hCceEecCCC-----ChhcHHHHHHHHHh-CcCCCCCCCCc
Confidence 488998765 2233455587 67999999999976 66789999875
No 17
>PF09679 TraQ: Type-F conjugative transfer system pilin chaperone (TraQ); InterPro: IPR014112 This entry represents TraQ, a protein that makes a specific interaction with pilin (TraA) to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly [, ].
Probab=96.64 E-value=0.001 Score=57.62 Aligned_cols=47 Identities=21% Similarity=0.512 Sum_probs=42.9
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhccchhhhHhhhhhhccceeeeehhHHHHHHH
Q 010378 409 IWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDAL 461 (512)
Q Consensus 409 iW~yA~~qf~~vvl~~hifY~~~~~~~v~ai~la~~~Gfgi~m~~~s~~~~~~ 461 (512)
+|+++ +| +++||+.++++.++.+|++||.+-|+|++|+|.+-+++.+
T Consensus 16 ~wv~~---lG---~wfHIvarLV~~~P~mA~~LAeiia~~Lvl~GgYrILda~ 62 (93)
T PF09679_consen 16 MWVFS---LG---FWFHIVARLVYRQPEMAFFLAEIIAVGLVLSGGYRILDAW 62 (93)
T ss_pred chhhH---HH---HHHHHHHHHHHhChHHHHHHHHHHHHHHhhhhhHHHHHHH
Confidence 68776 55 6789999999999999999999999999999999988877
No 18
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=96.53 E-value=0.001 Score=54.74 Aligned_cols=53 Identities=23% Similarity=0.529 Sum_probs=24.6
Q ss_pred CCeeeEcccccCCCCCceeecc---ccCCccccccHHHHHHHHHHc-CC--------cccccccccee
Q 010378 266 EAVCRICFIELGEGFDALKMEC---GCKGELAFAHRECAVKWFSIK-GN--------KTCEVCKQEVE 321 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC---~CKGsLk~VH~~CL~kW~~~k-g~--------~~CEICk~~y~ 321 (512)
+..|.||+....+.++....-| .|+ +..|..||.+||... +. -.|+.|+.++.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~---~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCG---KKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT-------B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccC---CHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 4589999977543333333444 565 568999999999753 11 36999999876
No 19
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.34 E-value=0.0022 Score=70.37 Aligned_cols=49 Identities=31% Similarity=0.826 Sum_probs=40.7
Q ss_pred CCCCeeeEcccccCCCCC--ceeeccccCCccccccHHHHHHHHHHcCCccccccccc
Q 010378 264 EEEAVCRICFIELGEGFD--ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~--~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~ 319 (512)
+....|.||.++.....+ +-++||. +.+|..||++|+.. ..+|++|+.+
T Consensus 289 ~~~~~C~IC~e~l~~~~~~~~~rL~C~-----Hifh~~CL~~W~er--~qtCP~CR~~ 339 (543)
T KOG0802|consen 289 LSDELCIICLEELHSGHNITPKRLPCG-----HIFHDSCLRSWFER--QQTCPTCRTV 339 (543)
T ss_pred hcCCeeeeechhhccccccccceeecc-----cchHHHHHHHHHHH--hCcCCcchhh
Confidence 356799999988754333 6789998 89999999999987 5689999994
No 20
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.25 E-value=0.0076 Score=60.30 Aligned_cols=56 Identities=29% Similarity=0.526 Sum_probs=45.2
Q ss_pred CCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcC-Cccccccccceeeccee
Q 010378 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKG-NKTCEVCKQEVENLPVT 326 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg-~~~CEICk~~y~nlpv~ 326 (512)
+.....|-||++. ..++.+..|. +++==.||-+|+..+. +..|++||.++..-.+.
T Consensus 44 ~~~~FdCNICLd~---akdPVvTlCG-----HLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vv 100 (230)
T KOG0823|consen 44 DGGFFDCNICLDL---AKDPVVTLCG-----HLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVV 100 (230)
T ss_pred CCCceeeeeeccc---cCCCEEeecc-----cceehHHHHHHHhhcCCCeeCCccccccccceEE
Confidence 4467899999965 3568999999 7888899999998875 46779999998865543
No 21
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=96.19 E-value=0.0048 Score=41.80 Aligned_cols=39 Identities=41% Similarity=0.962 Sum_probs=31.1
Q ss_pred eeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccc
Q 010378 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (512)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEIC 316 (512)
|.||++. ..+....||. +.+|+.|+.+|+. .+...|++|
T Consensus 1 C~iC~~~---~~~~~~~~C~-----H~~c~~C~~~~~~-~~~~~CP~C 39 (39)
T smart00184 1 CPICLEE---LKDPVVLPCG-----HTFCRSCIRKWLK-SGNNTCPIC 39 (39)
T ss_pred CCcCccC---CCCcEEecCC-----ChHHHHHHHHHHH-hCcCCCCCC
Confidence 6788865 3467788988 6789999999998 556779887
No 22
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=96.08 E-value=0.007 Score=52.34 Aligned_cols=53 Identities=30% Similarity=0.652 Sum_probs=36.5
Q ss_pred CCeeeEcccccCC--------CCC-ceeeccccCCccccccHHHHHHHHHHc-CCccccccccceee
Q 010378 266 EAVCRICFIELGE--------GFD-ALKMECGCKGELAFAHRECAVKWFSIK-GNKTCEVCKQEVEN 322 (512)
Q Consensus 266 e~vCRICl~e~~e--------~~~-~Li~PC~CKGsLk~VH~~CL~kW~~~k-g~~~CEICk~~y~n 322 (512)
+..|-||....+. +++ +++ =+.|. +.+|..|+.+|+... .+..|++|+++++.
T Consensus 21 dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv-~g~C~---H~FH~hCI~kWl~~~~~~~~CPmCR~~w~~ 83 (85)
T PF12861_consen 21 DDVCGICRMPFDGCCPDCKFPGDDCPLV-WGKCS---HNFHMHCILKWLSTQSSKGQCPMCRQPWKF 83 (85)
T ss_pred CCceeeEecccccCCCCccCCCCCCcee-eccCc---cHHHHHHHHHHHccccCCCCCCCcCCeeee
Confidence 4578888766531 111 222 23443 779999999999864 56899999999874
No 23
>PHA02926 zinc finger-like protein; Provisional
Probab=95.81 E-value=0.0078 Score=60.26 Aligned_cols=56 Identities=20% Similarity=0.514 Sum_probs=41.9
Q ss_pred CCCeeeEcccccCCC---C---CceeeccccCCccccccHHHHHHHHHHc----CCccccccccceeecce
Q 010378 265 EEAVCRICFIELGEG---F---DALKMECGCKGELAFAHRECAVKWFSIK----GNKTCEVCKQEVENLPV 325 (512)
Q Consensus 265 ee~vCRICl~e~~e~---~---~~Li~PC~CKGsLk~VH~~CL~kW~~~k----g~~~CEICk~~y~nlpv 325 (512)
.+.+|-||++..-+. . -.+..+|. +.+...|+.+|...+ ....|++|+..+..+-.
T Consensus 169 kE~eCgICmE~I~eK~~~~eRrFGIL~~Cn-----HsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~~I~p 234 (242)
T PHA02926 169 KEKECGICYEVVYSKRLENDRYFGLLDSCN-----HIFCITCINIWHRTRRETGASDNCPICRTRFRNITM 234 (242)
T ss_pred CCCCCccCccccccccccccccccccCCCC-----chHHHHHHHHHHHhccccCcCCcCCCCcceeeeecc
Confidence 568999999764221 1 13567788 889999999999864 24679999999997643
No 24
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=95.44 E-value=0.012 Score=42.47 Aligned_cols=41 Identities=29% Similarity=0.794 Sum_probs=33.5
Q ss_pred eeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccc
Q 010378 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (512)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEIC 316 (512)
|.||++... ......+|. +.++..|+.+|+...+...|++|
T Consensus 1 C~iC~~~~~--~~~~~~~C~-----H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFE--DPVILLPCG-----HSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCS--SEEEETTTS-----EEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCcccc--CCCEEecCC-----CcchHHHHHHHHHhcCCccCCcC
Confidence 788987643 222489998 88999999999998888899988
No 25
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.27 E-value=0.0064 Score=70.49 Aligned_cols=55 Identities=27% Similarity=0.611 Sum_probs=38.1
Q ss_pred CCCeeeEcccccC--CCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELG--EGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+..+|.||+.-.. +..-+-..---|| .-.|-.||-|||..+++.+|++|+.++..
T Consensus 1468 G~eECaICYsvL~~vdr~lPskrC~TCk---nKFH~~CLyKWf~Ss~~s~CPlCRseitf 1524 (1525)
T COG5219 1468 GHEECAICYSVLDMVDRSLPSKRCATCK---NKFHTRCLYKWFASSARSNCPLCRSEITF 1524 (1525)
T ss_pred CcchhhHHHHHHHHHhccCCccccchhh---hhhhHHHHHHHHHhcCCCCCCcccccccc
Confidence 4468999986543 1111211112354 35899999999999999999999988753
No 26
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=94.82 E-value=0.012 Score=50.38 Aligned_cols=51 Identities=24% Similarity=0.529 Sum_probs=37.7
Q ss_pred eeeEcccccCC---------CCCceeeccccCCccccccHHHHHHHHHHcCC-ccccccccceee
Q 010378 268 VCRICFIELGE---------GFDALKMECGCKGELAFAHRECAVKWFSIKGN-KTCEVCKQEVEN 322 (512)
Q Consensus 268 vCRICl~e~~e---------~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~-~~CEICk~~y~n 322 (512)
.|-||.+..+. ++=+|+.. .|+ +.+|.-|+.+|+..+.+ -.|+.|+++++.
T Consensus 22 ~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G-~C~---h~fh~hCI~~wl~~~tsq~~CPmcRq~~~~ 82 (84)
T KOG1493|consen 22 TCGICRMPFDGCCPDCKLPGDDCPLVWG-YCL---HAFHAHCILKWLNTPTSQGQCPMCRQTWQF 82 (84)
T ss_pred ccceEecccCCcCCCCcCCCCCCccHHH-HHH---HHHHHHHHHHHhcCccccccCCcchheeEe
Confidence 88888876531 11255555 442 78999999999987654 799999999875
No 27
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=94.72 E-value=0.038 Score=57.00 Aligned_cols=61 Identities=25% Similarity=0.592 Sum_probs=48.3
Q ss_pred CCCCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecceeee
Q 010378 258 GGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVTLL 328 (512)
Q Consensus 258 ~~Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv~ll 328 (512)
...++++....|-+|++. ..++--.||. +.+=-.|+..|..++.. |++|+.+++.-.+-.+
T Consensus 231 ~~~~i~~a~~kC~LCLe~---~~~pSaTpCG-----HiFCWsCI~~w~~ek~e--CPlCR~~~~pskvi~L 291 (293)
T KOG0317|consen 231 SLSSIPEATRKCSLCLEN---RSNPSATPCG-----HIFCWSCILEWCSEKAE--CPLCREKFQPSKVICL 291 (293)
T ss_pred CCccCCCCCCceEEEecC---CCCCCcCcCc-----chHHHHHHHHHHccccC--CCcccccCCCcceeee
Confidence 445668888999999966 3467789999 78888999999988754 9999999885544433
No 28
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.97 E-value=0.034 Score=61.03 Aligned_cols=53 Identities=23% Similarity=0.610 Sum_probs=38.8
Q ss_pred CCCCCeeeEcccccCC---C-----------CCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 263 PEEEAVCRICFIELGE---G-----------FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 263 ~eee~vCRICl~e~~e---~-----------~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
.+....|-||+....- + .+-+..||. +..|..||++|.... +..|++|+....
T Consensus 568 ~~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~-----HifH~~CL~~WMd~y-kl~CPvCR~pLP 634 (636)
T KOG0828|consen 568 VRRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCH-----HIFHRQCLLQWMDTY-KLICPVCRCPLP 634 (636)
T ss_pred hhccccceEeccccceeeccCcchhhhhhhhccccccchH-----HHHHHHHHHHHHhhh-cccCCccCCCCC
Confidence 4567899999876531 1 123456998 899999999999742 368999998754
No 29
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=93.95 E-value=0.066 Score=41.49 Aligned_cols=45 Identities=22% Similarity=0.324 Sum_probs=36.3
Q ss_pred CeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
..|.||..-. .++...||. +.+-+.|+.+|+.. +..|++|+..+.
T Consensus 2 ~~Cpi~~~~~---~~Pv~~~~G-----~v~~~~~i~~~~~~--~~~cP~~~~~~~ 46 (63)
T smart00504 2 FLCPISLEVM---KDPVILPSG-----QTYERRAIEKWLLS--HGTDPVTGQPLT 46 (63)
T ss_pred cCCcCCCCcC---CCCEECCCC-----CEEeHHHHHHHHHH--CCCCCCCcCCCC
Confidence 4799998664 347888875 77899999999977 568999998874
No 30
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=93.90 E-value=0.043 Score=39.72 Aligned_cols=38 Identities=39% Similarity=0.836 Sum_probs=29.6
Q ss_pred eeEcccccCCCCCc-eeeccccCCccccccHHHHHHHHHHcCCcccccc
Q 010378 269 CRICFIELGEGFDA-LKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (512)
Q Consensus 269 CRICl~e~~e~~~~-Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEIC 316 (512)
|.||++.. .++ ...+|. +.+.++|+.+|+.. +..|++|
T Consensus 1 C~iC~~~~---~~~~~~~~CG-----H~fC~~C~~~~~~~--~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDEL---RDPVVVTPCG-----HSFCKECIEKYLEK--NPKCPVC 39 (39)
T ss_dssp ETTTTSB----SSEEEECTTS-----EEEEHHHHHHHHHC--TSB-TTT
T ss_pred CCCCCCcc---cCcCEECCCC-----CchhHHHHHHHHHC--cCCCcCC
Confidence 77898664 346 579998 89999999999977 4789988
No 31
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.24 E-value=0.085 Score=55.76 Aligned_cols=52 Identities=25% Similarity=0.512 Sum_probs=37.7
Q ss_pred CCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 262 IPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 262 i~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
..+++..|-||+.+ ..+.+++||+ --..=..|++...-. .+.|+||++.+.-
T Consensus 286 ~~~~gkeCVIClse---~rdt~vLPCR----HLCLCs~Ca~~Lr~q--~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 286 ESESGKECVICLSE---SRDTVVLPCR----HLCLCSGCAKSLRYQ--TNNCPICRQPIEE 337 (349)
T ss_pred cccCCCeeEEEecC---CcceEEecch----hhehhHhHHHHHHHh--hcCCCccccchHh
Confidence 44678999999966 4578999987 112445788876622 4579999998774
No 32
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=92.97 E-value=0.084 Score=39.33 Aligned_cols=44 Identities=25% Similarity=0.585 Sum_probs=36.3
Q ss_pred eeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccc
Q 010378 268 VCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 318 (512)
Q Consensus 268 vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~ 318 (512)
.|-||+....+...+.+++|. +.+...|+.++. .....|++|++
T Consensus 1 ~C~~C~~~~~~~~~~~l~~Cg-----H~~C~~C~~~~~--~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCG-----HIFCEKCLKKLK--GKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccC-----CHHHHHHHHhhc--CCCCCCcCCCC
Confidence 378898887444568899998 899999999998 66789999984
No 33
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=91.78 E-value=0.11 Score=55.84 Aligned_cols=47 Identities=26% Similarity=0.653 Sum_probs=32.8
Q ss_pred CCeeeEcccccCCCCCc-eeeccccCCccccccHHHHHHHHHHcCC-ccccccc
Q 010378 266 EAVCRICFIELGEGFDA-LKMECGCKGELAFAHRECAVKWFSIKGN-KTCEVCK 317 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~-Li~PC~CKGsLk~VH~~CL~kW~~~kg~-~~CEICk 317 (512)
.+.|.||-+......+. -+.-|. +.+|..||.+||..--. +.||||+
T Consensus 4 ~A~C~Ic~d~~p~~~~l~~i~~cG-----hifh~~cl~qwfe~~Ps~R~cpic~ 52 (465)
T KOG0827|consen 4 MAECHICIDGRPNDHELGPIGTCG-----HIFHTTCLTQWFEGDPSNRGCPICQ 52 (465)
T ss_pred cceeeEeccCCccccccccccchh-----hHHHHHHHHHHHccCCccCCCCcee
Confidence 47899994332112221 244476 78999999999987544 7999999
No 34
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=91.29 E-value=0.12 Score=55.59 Aligned_cols=48 Identities=19% Similarity=0.369 Sum_probs=38.9
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
....|.||+... .++.+.||. +.+...|+..|+..+ ..|++|+..+..
T Consensus 25 ~~l~C~IC~d~~---~~PvitpCg-----H~FCs~CI~~~l~~~--~~CP~Cr~~~~~ 72 (397)
T TIGR00599 25 TSLRCHICKDFF---DVPVLTSCS-----HTFCSLCIRRCLSNQ--PKCPLCRAEDQE 72 (397)
T ss_pred cccCCCcCchhh---hCccCCCCC-----CchhHHHHHHHHhCC--CCCCCCCCcccc
Confidence 457999998654 346788998 788999999999764 489999998764
No 35
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=87.63 E-value=0.39 Score=37.70 Aligned_cols=46 Identities=24% Similarity=0.541 Sum_probs=23.3
Q ss_pred eeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc--CCcccccccccee
Q 010378 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--GNKTCEVCKQEVE 321 (512)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k--g~~~CEICk~~y~ 321 (512)
|.+|.++.. ..+.-..||.|. ++-|+.=|...+ .+..|+-|+..|.
T Consensus 1 cp~C~e~~d-~~d~~~~PC~Cg------f~IC~~C~~~i~~~~~g~CPgCr~~Y~ 48 (48)
T PF14570_consen 1 CPLCDEELD-ETDKDFYPCECG------FQICRFCYHDILENEGGRCPGCREPYK 48 (48)
T ss_dssp -TTTS-B---CCCTT--SSTTS----------HHHHHHHTTSS-SB-TTT--B--
T ss_pred CCCcccccc-cCCCccccCcCC------CcHHHHHHHHHHhccCCCCCCCCCCCC
Confidence 667877763 344568999995 678888888776 4789999999984
No 36
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=86.48 E-value=0.68 Score=53.68 Aligned_cols=54 Identities=20% Similarity=0.436 Sum_probs=38.1
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecce
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPV 325 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv 325 (512)
....|-+|+....+....-..+|.| |+|..|+..|-.. ..+|++|+.+|.-+.|
T Consensus 122 ~~~~CP~Ci~s~~DqL~~~~k~c~H-----~FC~~Ci~sWsR~--aqTCPiDR~EF~~v~V 175 (1134)
T KOG0825|consen 122 VENQCPNCLKSCNDQLEESEKHTAH-----YFCEECVGSWSRC--AQTCPVDRGEFGEVKV 175 (1134)
T ss_pred hhhhhhHHHHHHHHHhhcccccccc-----ccHHHHhhhhhhh--cccCchhhhhhheeee
Confidence 4567777765543221223456775 9999999999755 5689999999987654
No 37
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=86.44 E-value=0.28 Score=51.42 Aligned_cols=53 Identities=17% Similarity=0.493 Sum_probs=40.4
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc---------------------CCccccccccceeec
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK---------------------GNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k---------------------g~~~CEICk~~y~nl 323 (512)
...|-||+-++.+.+...+.+|- +|.|..||.+.+..- -...|+||.......
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~-----Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e 188 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACD-----HYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIE 188 (368)
T ss_pred CCceEEEEEeecCCCceeeehhH-----HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccc
Confidence 46899998887655556789998 999999998877541 136799999887653
No 38
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=86.28 E-value=0.28 Score=53.09 Aligned_cols=49 Identities=24% Similarity=0.636 Sum_probs=41.1
Q ss_pred CeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
..|.||-+. +.+.-+.||. ++.-..||-.|....+...|+.|+++.+-.
T Consensus 370 eLCKICaen---dKdvkIEPCG-----HLlCt~CLa~WQ~sd~gq~CPFCRcEIKGt 418 (563)
T KOG1785|consen 370 ELCKICAEN---DKDVKIEPCG-----HLLCTSCLAAWQDSDEGQTCPFCRCEIKGT 418 (563)
T ss_pred HHHHHhhcc---CCCccccccc-----chHHHHHHHhhcccCCCCCCCceeeEeccc
Confidence 579999754 3457789998 788889999999888889999999998854
No 39
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=85.68 E-value=0.43 Score=52.13 Aligned_cols=48 Identities=25% Similarity=0.693 Sum_probs=35.3
Q ss_pred CCCeeeEcccccCCCC-CceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~-~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
|-+.|-+|++-..++. ..+-..|. +-+|..|+.+|- +..|++|++.-.
T Consensus 174 ELPTCpVCLERMD~s~~gi~t~~c~-----Hsfh~~cl~~w~----~~scpvcR~~q~ 222 (493)
T KOG0804|consen 174 ELPTCPVCLERMDSSTTGILTILCN-----HSFHCSCLMKWW----DSSCPVCRYCQS 222 (493)
T ss_pred cCCCcchhHhhcCccccceeeeecc-----cccchHHHhhcc----cCcChhhhhhcC
Confidence 6699999997764332 24556676 779999999996 446888877655
No 40
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=85.56 E-value=0.23 Score=51.41 Aligned_cols=54 Identities=24% Similarity=0.603 Sum_probs=41.2
Q ss_pred CCCeeeEcccccCC----C---CCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELGE----G---FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e----~---~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
+..+|.+|-..... + ++.-.+-|+ +-.|+-|++-|...-...+|+-||.++...
T Consensus 223 ~d~vCaVCg~~~~~s~~eegvienty~LsCn-----HvFHEfCIrGWcivGKkqtCPYCKekVdl~ 283 (328)
T KOG1734|consen 223 SDSVCAVCGQQIDVSVDEEGVIENTYKLSCN-----HVFHEFCIRGWCIVGKKQTCPYCKEKVDLK 283 (328)
T ss_pred CcchhHhhcchheeecchhhhhhhheeeecc-----cchHHHhhhhheeecCCCCCchHHHHhhHh
Confidence 34689999644321 1 256678888 889999999999887788999999987743
No 41
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=85.13 E-value=0.51 Score=44.16 Aligned_cols=43 Identities=19% Similarity=0.391 Sum_probs=29.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCcc-ccccHHHHHHHHHH
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGEL-AFAHRECAVKWFSI 307 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsL-k~VH~~CL~kW~~~ 307 (512)
-..+|+||++...+.+.....+|...-.+ +..|..|+++|-..
T Consensus 25 ~~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~ 68 (134)
T PF05883_consen 25 CTVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRE 68 (134)
T ss_pred cCeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhh
Confidence 36799999988765334556666644333 34899999999543
No 42
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.82 E-value=0.72 Score=50.03 Aligned_cols=62 Identities=24% Similarity=0.574 Sum_probs=44.8
Q ss_pred CCCeeeEcccccCCCCC-cee-eccccCCccccccHHHHHHHHHHcCCccccccccceeec---ceeeeeec
Q 010378 265 EEAVCRICFIELGEGFD-ALK-MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL---PVTLLRLQ 331 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~-~Li-~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl---pv~llr~q 331 (512)
.+..|-||+++..-.++ .+. .-|. +++-..|+++|+..+-...|+.|+.+...- +.+.+|+|
T Consensus 3 ~g~tcpiclds~~~~g~hr~vsl~cg-----hlFgs~cie~wl~k~~~~~cp~c~~katkr~i~~e~alR~q 69 (463)
T KOG1645|consen 3 CGTTCPICLDSYTTAGNHRIVSLQCG-----HLFGSQCIEKWLGKKTKMQCPLCSGKATKRQIRPEYALRVQ 69 (463)
T ss_pred ccccCceeeeeeeecCceEEeeeccc-----ccccHHHHHHHHhhhhhhhCcccCChhHHHHHHHHHHHHHH
Confidence 46789999988765555 333 4465 789999999999866678999999886542 23345555
No 43
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=80.51 E-value=1.9 Score=37.64 Aligned_cols=27 Identities=22% Similarity=0.477 Sum_probs=24.0
Q ss_pred ccccHHHHHHHHHHcCCccccccccceee
Q 010378 294 AFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 294 k~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+.+|.-|+.+|+..+ ..|++|.++++.
T Consensus 56 HaFH~HCI~rWL~Tk--~~CPld~q~w~~ 82 (88)
T COG5194 56 HAFHDHCIYRWLDTK--GVCPLDRQTWVL 82 (88)
T ss_pred hHHHHHHHHHHHhhC--CCCCCCCceeEE
Confidence 789999999999985 489999999874
No 44
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.59 E-value=2.9 Score=41.12 Aligned_cols=60 Identities=17% Similarity=0.400 Sum_probs=42.5
Q ss_pred CCCCCCCCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 254 KKDDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 254 ~~~~~~Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
...|..|..+++..-|-||++... +..+.-.-|. +.+-.+|++.-++. ...|++|+.++.
T Consensus 119 ~~k~v~~~~~~~~~~CPiCl~~~s-ek~~vsTkCG-----HvFC~~Cik~alk~--~~~CP~C~kkIt 178 (187)
T KOG0320|consen 119 RDKDVDPLRKEGTYKCPICLDSVS-EKVPVSTKCG-----HVFCSQCIKDALKN--TNKCPTCRKKIT 178 (187)
T ss_pred ccccccccccccccCCCceecchh-hccccccccc-----hhHHHHHHHHHHHh--CCCCCCcccccc
Confidence 445555556667799999998764 2233446676 77788999988754 679999998544
No 45
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=79.15 E-value=71 Score=36.03 Aligned_cols=50 Identities=20% Similarity=0.632 Sum_probs=37.0
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH---cCCccccccccceeec
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI---KGNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~---kg~~~CEICk~~y~nl 323 (512)
+..|-||+.+.. -+..+-|. +.+=-.||.+.+.. ++-..|++|...+...
T Consensus 186 ~~~CPICL~~~~---~p~~t~CG-----HiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~k 238 (513)
T KOG2164|consen 186 DMQCPICLEPPS---VPVRTNCG-----HIFCGPCILQYWNYSAIKGPCSCPICRSTITLK 238 (513)
T ss_pred CCcCCcccCCCC---cccccccC-----ceeeHHHHHHHHhhhcccCCccCCchhhhcccc
Confidence 789999996642 24455576 66777898887754 3568999999998763
No 46
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=77.83 E-value=1.4 Score=36.22 Aligned_cols=49 Identities=18% Similarity=0.297 Sum_probs=34.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|-||..-. .++.+.||. +.+-+.|+++|+.. +..+|++|+..+..
T Consensus 3 ~~f~CpIt~~lM---~dPVi~~~G-----~tyer~~I~~~l~~-~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELM---RDPVILPSG-----HTYERSAIERWLEQ-NGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB----SSEEEETTS-----EEEEHHHHHHHHCT-TSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHh---hCceeCCcC-----CEEcHHHHHHHHHc-CCCCCCCCCCcCCc
Confidence 467888887443 468888876 67899999999977 57899999887664
No 47
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=77.51 E-value=1.1 Score=52.29 Aligned_cols=60 Identities=22% Similarity=0.465 Sum_probs=44.6
Q ss_pred CCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc-----CCccccccccceeeccee
Q 010378 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK-----GNKTCEVCKQEVENLPVT 326 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k-----g~~~CEICk~~y~nlpv~ 326 (512)
..+.-+|-||.+........+ +|+.=.+.+|..|+++|-..+ ..|.|+-|++.++.++.+
T Consensus 188 ~~~~yeCmIC~e~I~~t~~~W----SC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~~~~~~~ 252 (950)
T KOG1952|consen 188 SNRKYECMICTERIKRTAPVW----SCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVSKTVPKT 252 (950)
T ss_pred hcCceEEEEeeeeccccCCce----ecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchhccCCcc
Confidence 345689999997764333333 455556889999999998653 359999999999977764
No 48
>PLN02189 cellulose synthase
Probab=75.72 E-value=1.9 Score=51.48 Aligned_cols=53 Identities=28% Similarity=0.606 Sum_probs=37.1
Q ss_pred CCCeeeEcccccC--CCCCceeeccc-cCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELG--EGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li~PC~-CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
.+.+|+||-++.+ +.++++ -.|. |.= -|=+.|. ..-...|+..|+.||++|+-
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~f-vaC~~C~f---pvCr~Cy-eyer~eg~q~CpqCkt~Y~r 88 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLF-VACNECGF---PVCRPCY-EYERREGTQNCPQCKTRYKR 88 (1040)
T ss_pred cCccccccccccCcCCCCCEE-EeeccCCC---ccccchh-hhhhhcCCccCcccCCchhh
Confidence 4569999987765 345544 5566 521 2677898 33455689999999999993
No 49
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=75.61 E-value=2 Score=32.13 Aligned_cols=40 Identities=25% Similarity=0.630 Sum_probs=27.9
Q ss_pred eeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCC--cccccc
Q 010378 269 CRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGN--KTCEVC 316 (512)
Q Consensus 269 CRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~--~~CEIC 316 (512)
|-||++-. .++..++|. +-+=+.||.+|...... ..|++|
T Consensus 1 CpiC~~~~---~~Pv~l~CG-----H~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLF---KDPVSLPCG-----HSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB----SSEEE-SSS-----SEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhh---CCccccCCc-----CHHHHHHHHHHHHccCCcCCCCcCC
Confidence 67898654 468899998 67788999999977654 589887
No 50
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=75.52 E-value=2.3 Score=32.39 Aligned_cols=40 Identities=20% Similarity=0.459 Sum_probs=22.0
Q ss_pred eeEcccccCCCC-CceeeccccCCccccccHHHHHHHHHHc--CCcccc
Q 010378 269 CRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIK--GNKTCE 314 (512)
Q Consensus 269 CRICl~e~~e~~-~~Li~PC~CKGsLk~VH~~CL~kW~~~k--g~~~CE 314 (512)
|-||.+ ..+++ .+..+||. +-+=++||++|.+.+ +...|+
T Consensus 1 CpIc~e-~~~~~n~P~~L~CG-----H~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCG-----HVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS------EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCc-----cHHHHHHHHHHHhcCCCCeeeCc
Confidence 678876 43333 37889988 788899999999865 455664
No 51
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=73.91 E-value=1.5 Score=40.80 Aligned_cols=45 Identities=31% Similarity=0.738 Sum_probs=36.9
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccc
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 318 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~ 318 (512)
+++..|-||++...+ +.+.||. +.+=+.|+..|+. ....|+.|+.
T Consensus 11 ~~~~~C~iC~~~~~~---p~~l~C~-----H~~c~~C~~~~~~--~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFRE---PVLLPCG-----HNFCRACLTRSWE--GPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhc---Ccccccc-----chHhHHHHHHhcC--CCcCCcccCC
Confidence 467899999977643 3788998 7777899999998 7789999994
No 52
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=72.83 E-value=1.5 Score=37.02 Aligned_cols=33 Identities=27% Similarity=0.597 Sum_probs=24.7
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHH
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVK 303 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~k 303 (512)
++..|.+|....+. +.-.+.||. +.+|..|+.+
T Consensus 77 ~~~~C~vC~k~l~~-~~f~~~p~~-----~v~H~~C~~r 109 (109)
T PF10367_consen 77 ESTKCSVCGKPLGN-SVFVVFPCG-----HVVHYSCIKR 109 (109)
T ss_pred CCCCccCcCCcCCC-ceEEEeCCC-----eEEecccccC
Confidence 45679999988753 445578886 7899999864
No 53
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=69.95 E-value=4.1 Score=42.90 Aligned_cols=52 Identities=17% Similarity=0.376 Sum_probs=36.9
Q ss_pred CCeeeEcccccCCCC--CceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 266 EAVCRICFIELGEGF--DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e~~--~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
+..|-+|........ ..++.+|. |-+=..|+.+.|. ++...|++|+..+..-
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CG-----H~~C~sCv~~l~~-~~~~~CP~C~~~lrk~ 56 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFV-RGSGSCPECDTPLRKN 56 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCC-----CcccHHHHHHHhc-CCCCCCCCCCCccchh
Confidence 368999987543222 24667887 6677799999764 3667999999877643
No 54
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=68.56 E-value=2.6 Score=41.06 Aligned_cols=25 Identities=28% Similarity=0.752 Sum_probs=19.6
Q ss_pred CCCeeeEcccccCCCCCceeecccc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGC 289 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~C 289 (512)
..-+|-||++++...+..-.+||-|
T Consensus 176 dkGECvICLEdL~~GdtIARLPCLC 200 (205)
T KOG0801|consen 176 DKGECVICLEDLEAGDTIARLPCLC 200 (205)
T ss_pred cCCcEEEEhhhccCCCceeccceEE
Confidence 3468999998886555566899999
No 55
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=68.21 E-value=4.1 Score=50.55 Aligned_cols=54 Identities=24% Similarity=0.696 Sum_probs=39.1
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc--------CCccccccccceeec
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK--------GNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k--------g~~~CEICk~~y~nl 323 (512)
.+++|-||+.+.-.....+.+.|+ +.+|..|..+-+..+ +-..|+||+.+...+
T Consensus 3485 ~DDmCmICFTE~L~AAP~IqL~C~-----HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~InH~ 3546 (3738)
T KOG1428|consen 3485 ADDMCMICFTEALSAAPAIQLDCS-----HIFHLQCCRRVLENRWLGPRITFGFISCPICKNKINHI 3546 (3738)
T ss_pred cCceEEEEehhhhCCCcceecCCc-----cchhHHHHHHHHHhcccCCeeEEeeeecccccchhhhH
Confidence 568999999765322233456666 899999998766554 347999999998764
No 56
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.37 E-value=4.2 Score=43.32 Aligned_cols=58 Identities=21% Similarity=0.423 Sum_probs=40.2
Q ss_pred CCCCeeeEcccccCCCC----Cceeec-cccCCccccccHHHHHHHHHHcC-----Cccccccccceeeccee
Q 010378 264 EEEAVCRICFIELGEGF----DALKME-CGCKGELAFAHRECAVKWFSIKG-----NKTCEVCKQEVENLPVT 326 (512)
Q Consensus 264 eee~vCRICl~e~~e~~----~~Li~P-C~CKGsLk~VH~~CL~kW~~~kg-----~~~CEICk~~y~nlpv~ 326 (512)
..+.+|-||++...+.- ..-|+| |. +..=..|+.+|...+. +..|++|+..-..+-..
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~-----H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s~~v~pS 226 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCN-----HSFCLNCIRKWRQATQFESKTSKSCPFCRVPSSFVNPS 226 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcc-----hhhhhcHhHhhhhhhccccccccCCCcccCcccccccc
Confidence 35789999997764322 011334 76 5566789999997665 68999999887765433
No 57
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=67.30 E-value=4.9 Score=41.54 Aligned_cols=58 Identities=24% Similarity=0.414 Sum_probs=43.5
Q ss_pred CCCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHH-HHHHcCCccccccccceeecce
Q 010378 259 GEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVK-WFSIKGNKTCEVCKQEVENLPV 325 (512)
Q Consensus 259 ~Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~k-W~~~kg~~~CEICk~~y~nlpv 325 (512)
.-++++....|-||++.. ..+...||. +.+--.||.. |-..+ .-.|++|+.......+
T Consensus 208 ~pfip~~d~kC~lC~e~~---~~ps~t~Cg-----HlFC~~Cl~~~~t~~k-~~~CplCRak~~pk~v 266 (271)
T COG5574 208 LPFIPLADYKCFLCLEEP---EVPSCTPCG-----HLFCLSCLLISWTKKK-YEFCPLCRAKVYPKKV 266 (271)
T ss_pred CCcccccccceeeeeccc---CCccccccc-----chhhHHHHHHHHHhhc-cccCchhhhhccchhh
Confidence 345677789999998663 467889998 7777888888 86543 4569999998765444
No 58
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=65.85 E-value=1.6 Score=47.46 Aligned_cols=51 Identities=22% Similarity=0.548 Sum_probs=41.7
Q ss_pred CCCCCeeeEcccccCCCCC-ceeeccccCCccccccHHHHHHHHHHcCCcccccccc
Q 010378 263 PEEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQ 318 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~~-~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~ 318 (512)
.|-+-.|-.|-+..+...+ .--+||+ +.+|..||...+...+...|+-|+.
T Consensus 362 ~e~~L~Cg~CGe~~Glk~e~LqALpCs-----HIfH~rCl~e~L~~n~~rsCP~Crk 413 (518)
T KOG1941|consen 362 EETELYCGLCGESIGLKNERLQALPCS-----HIFHLRCLQEILENNGTRSCPNCRK 413 (518)
T ss_pred HHHhhhhhhhhhhhcCCcccccccchh-----HHHHHHHHHHHHHhCCCCCCccHHH
Confidence 3456889999766665444 4469999 8999999999999999999999993
No 59
>PLN02436 cellulose synthase A
Probab=65.72 E-value=4.5 Score=48.68 Aligned_cols=54 Identities=24% Similarity=0.577 Sum_probs=36.9
Q ss_pred CCCeeeEcccccC--CCCCceeeccc-cCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELG--EGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li~PC~-CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
.+.+|.||-++.+ .+++++ --|. |. --|=+.|. ..-...|+..|+.||++|+-.
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~F-VACn~C~---fpvCr~Cy-eyer~eg~~~Cpqckt~Y~r~ 91 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPF-VACNECA---FPVCRPCY-EYERREGNQACPQCKTRYKRI 91 (1094)
T ss_pred CCccccccccccCcCCCCCEE-EeeccCC---Cccccchh-hhhhhcCCccCcccCCchhhc
Confidence 4579999987654 345554 4454 42 12677898 334556899999999999933
No 60
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=64.75 E-value=9.2 Score=37.01 Aligned_cols=55 Identities=25% Similarity=0.703 Sum_probs=38.4
Q ss_pred CCCeeeEcccccCCCCCceeeccc----------cCCccccccHHHHHHHHHHcC-------------------------
Q 010378 265 EEAVCRICFIELGEGFDALKMECG----------CKGELAFAHRECAVKWFSIKG------------------------- 309 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~----------CKGsLk~VH~~CL~kW~~~kg------------------------- 309 (512)
|+..|-||++- ..|...+-|+ |.. .|-|..||.+..+..+
T Consensus 1 ed~~CpICme~---PHNAVLLlCSS~~kgcRpymc~T--s~rhSNCLdqfkka~~~~~~~~~~~~~~~~~~~~~~~~~~~ 75 (162)
T PF07800_consen 1 EDVTCPICMEH---PHNAVLLLCSSHEKGCRPYMCDT--SYRHSNCLDQFKKAYGKSSSSSSQSSSSAPSDSSSSESSES 75 (162)
T ss_pred CCccCceeccC---CCceEEEEeccccCCccccccCC--ccchhHHHHHHHHHhcCCCCccccccccCcCCCcccccccc
Confidence 35689999865 3455555453 554 4889999999876532
Q ss_pred ----Cccccccccceeecc
Q 010378 310 ----NKTCEVCKQEVENLP 324 (512)
Q Consensus 310 ----~~~CEICk~~y~nlp 324 (512)
...|++|+-++.-..
T Consensus 76 ~~~~~L~CPLCRG~V~GWt 94 (162)
T PF07800_consen 76 QEQPELACPLCRGEVKGWT 94 (162)
T ss_pred cccccccCccccCceeceE
Confidence 257999998877653
No 61
>COG5034 TNG2 Chromatin remodeling protein, contains PhD zinc finger [Chromatin structure and dynamics]
Probab=63.65 E-value=3.2 Score=42.73 Aligned_cols=30 Identities=37% Similarity=0.595 Sum_probs=19.5
Q ss_pred ccCCccccccHHHHHHHHHHcCCccccccccc
Q 010378 288 GCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (512)
Q Consensus 288 ~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~ 319 (512)
.|+-+ |+|..|+--=---||.|.|+-||..
T Consensus 241 nCkrE--WFH~~CVGLk~pPKG~WYC~eCk~~ 270 (271)
T COG5034 241 NCKRE--WFHLECVGLKEPPKGKWYCPECKKA 270 (271)
T ss_pred CCchh--heeccccccCCCCCCcEeCHHhHhc
Confidence 45543 7888884311112689999999864
No 62
>PLN02195 cellulose synthase A
Probab=63.40 E-value=6.6 Score=46.89 Aligned_cols=51 Identities=24% Similarity=0.464 Sum_probs=34.8
Q ss_pred CCCeeeEcccccC--CCCCcee--eccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
...+|+||-++.+ ..+++++ ..|. --|=+.|.+ .=..-|+..|+.||++|+
T Consensus 5 ~~~~c~~cgd~~~~~~~g~~fvaC~eC~-----~pvCrpCye-yer~eg~q~CpqCkt~Yk 59 (977)
T PLN02195 5 GAPICATCGEEVGVDSNGEAFVACHECS-----YPLCKACLE-YEIKEGRKVCLRCGGPYD 59 (977)
T ss_pred CCccceecccccCcCCCCCeEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCccc
Confidence 4579999976554 3456654 3342 126678873 334458999999999999
No 63
>PLN02400 cellulose synthase
Probab=63.38 E-value=4.6 Score=48.62 Aligned_cols=53 Identities=26% Similarity=0.520 Sum_probs=35.5
Q ss_pred CCCeeeEcccccC--CCCCcee--eccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
.+.+|+||-++.+ ++|++++ ..|. --|=+.|.+ .=..-|+..|+.||++|+-.
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCa-----FPVCRpCYE-YERkeGnq~CPQCkTrYkR~ 91 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECA-----FPVCRPCYE-YERKDGTQCCPQCKTRYRRH 91 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCC-----Cccccchhh-eecccCCccCcccCCccccc
Confidence 4579999977654 3566654 3452 125668863 22345899999999999943
No 64
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=63.08 E-value=3.3 Score=48.39 Aligned_cols=54 Identities=24% Similarity=0.406 Sum_probs=35.4
Q ss_pred CCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH--cCCccccccc
Q 010378 260 EDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI--KGNKTCEVCK 317 (512)
Q Consensus 260 Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEICk 317 (512)
++..++..-|-||...+ .++.|++-=.|. ..|+|-+||.-=+.+ -+.++|.-|-
T Consensus 209 ~~~~~E~~~C~IC~~~D--pEdVLLLCDsCN--~~~YH~YCLDPdl~eiP~~eWYC~NC~ 264 (1134)
T KOG0825|consen 209 SGLSQEEVKCDICTVHD--PEDVLLLCDSCN--KVYYHVYCLDPDLSESPVNEWYCTNCS 264 (1134)
T ss_pred cCcccccccceeeccCC--hHHhheeecccc--cceeeccccCcccccccccceecCcch
Confidence 33345678899998664 344444332343 468999999886643 3568899995
No 65
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=62.74 E-value=5.4 Score=36.33 Aligned_cols=27 Identities=19% Similarity=0.461 Sum_probs=23.2
Q ss_pred ccccHHHHHHHHHHcCCccccccccceee
Q 010378 294 AFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 294 k~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+.+|.-|+.+|++.+ ..|++|..+...
T Consensus 83 HaFH~hCisrWlktr--~vCPLdn~eW~~ 109 (114)
T KOG2930|consen 83 HAFHFHCISRWLKTR--NVCPLDNKEWVF 109 (114)
T ss_pred hHHHHHHHHHHHhhc--CcCCCcCcceeE
Confidence 679999999999774 689999988664
No 66
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=62.08 E-value=7.6 Score=33.66 Aligned_cols=53 Identities=26% Similarity=0.495 Sum_probs=22.3
Q ss_pred CCCeeeEcccccC--CCCCcee--eccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
.+.+|.||-++.+ +.+++++ +.|. --|-+.|..-=. .-|+..|+.|+.+|.-.
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~-----fPvCr~CyEYEr-keg~q~CpqCkt~ykr~ 64 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECA-----FPVCRPCYEYER-KEGNQVCPQCKTRYKRH 64 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS----------HHHHHHHH-HTS-SB-TTT--B----
T ss_pred CCcccccccCccccCCCCCEEEEEcccC-----CccchhHHHHHh-hcCcccccccCCCcccc
Confidence 4689999976554 3456554 3344 347788876544 34789999999999844
No 67
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=61.78 E-value=7.6 Score=46.68 Aligned_cols=52 Identities=25% Similarity=0.556 Sum_probs=35.5
Q ss_pred CCCeeeEcccccC--CCCCcee--eccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
...+|.||-++.+ .+|++++ ..|. --|-+.|.+ .=..-|+..|+.||+.|+-
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~-----fpvCr~cye-ye~~~g~~~cp~c~t~y~~ 69 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCG-----FPVCKPCYE-YERSEGNQCCPQCNTRYKR 69 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchhh
Confidence 5679999976654 3456654 3442 126668873 3345589999999999994
No 68
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=59.99 E-value=7.8 Score=46.74 Aligned_cols=53 Identities=25% Similarity=0.465 Sum_probs=35.8
Q ss_pred CCCeeeEcccccC--CCCCcee--eccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
.+.+|+||-++.+ .+|++++ ..|. --|=+.|.+ .=..-|+..|+.||++|+-.
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~-----FPVCrpCYE-YEr~eG~q~CPqCktrYkr~ 72 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCA-----FPVCRPCYE-YERKDGNQSCPQCKTKYKRH 72 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCC-----Cccccchhh-hhhhcCCccCCccCCchhhh
Confidence 4579999976654 3456654 3442 126678873 23345899999999999943
No 69
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=57.49 E-value=12 Score=40.11 Aligned_cols=38 Identities=29% Similarity=0.677 Sum_probs=28.6
Q ss_pred eccccCCccccccHHHHHHHHHHcC-----------Cccccccccceeecce
Q 010378 285 MECGCKGELAFAHRECAVKWFSIKG-----------NKTCEVCKQEVENLPV 325 (512)
Q Consensus 285 ~PC~CKGsLk~VH~~CL~kW~~~kg-----------~~~CEICk~~y~nlpv 325 (512)
.+|.|+- .-=.+|+-|||..++ +..|+.|+.+|-.+-|
T Consensus 307 ~~C~CRP---mWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa~FCilDV 355 (358)
T PF10272_consen 307 QQCYCRP---MWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRAKFCILDV 355 (358)
T ss_pred ccccccc---hHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcccceeeee
Confidence 4677764 234589999998864 5799999999986543
No 70
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=55.94 E-value=6 Score=29.96 Aligned_cols=21 Identities=33% Similarity=0.846 Sum_probs=15.6
Q ss_pred ccHHHHHHHHHHcCCcccccc
Q 010378 296 AHRECAVKWFSIKGNKTCEVC 316 (512)
Q Consensus 296 VH~~CL~kW~~~kg~~~CEIC 316 (512)
+|..|+.++|..+.+..|+.|
T Consensus 23 ~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 23 LHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp E-HHHHHHHTTT-SS-B-TTT
T ss_pred HHHHHHHHHHhcCCCCCCcCC
Confidence 899999999998887799987
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=55.69 E-value=14 Score=40.05 Aligned_cols=56 Identities=27% Similarity=0.518 Sum_probs=37.7
Q ss_pred CCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecce
Q 010378 262 IPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPV 325 (512)
Q Consensus 262 i~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv 325 (512)
-+|++..|-||-.... =.-..||. +-+-+.|..+...--....|.+|+.+-..+-.
T Consensus 57 tDEen~~C~ICA~~~T---Ys~~~PC~-----H~~CH~Ca~RlRALY~~K~C~~CrTE~e~V~f 112 (493)
T COG5236 57 TDEENMNCQICAGSTT---YSARYPCG-----HQICHACAVRLRALYMQKGCPLCRTETEAVVF 112 (493)
T ss_pred cccccceeEEecCCce---EEEeccCC-----chHHHHHHHHHHHHHhccCCCccccccceEEE
Confidence 3456789999975542 13578998 33444666666554456789999999876533
No 72
>PRK13727 conjugal transfer pilin chaperone TraQ; Provisional
Probab=54.66 E-value=7.1 Score=33.60 Aligned_cols=48 Identities=17% Similarity=0.367 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhccchhhhHhhhhhhccceeeeehhHHHHHHHH
Q 010378 409 IWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 462 (512)
Q Consensus 409 iW~yA~~qf~~vvl~~hifY~~~~~~~v~ai~la~~~Gfgi~m~~~s~~~~~~~ 462 (512)
+|+++ .| .++||.-+++.-++-+|++|+.+-|.|++..|.+=++..+-
T Consensus 16 mwv~~---lG---~wfhiVarlVy~~PemA~~laeiiav~lVl~GgYRilda~i 63 (80)
T PRK13727 16 MWVFS---LG---VWFHIVARLVYSKPWMAFFLAELIAAILVLFGAYRVLDAWI 63 (80)
T ss_pred eehhh---hh---HHHHHHHHHHHcChHHHHHHHHHHHHHHHhhhHHHHHHHHH
Confidence 56665 33 56799999999999999999999999998888877665544
No 73
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=53.18 E-value=13 Score=43.26 Aligned_cols=119 Identities=25% Similarity=0.319 Sum_probs=67.5
Q ss_pred CCCCCCcccccccccccCCCCcceeeccCCCeeEEeeC--CCCccCCCCCCCCCCCCCCCCCCCCCCCCCCCC--CCCee
Q 010378 194 AKGAPLPIHRSRSVPLLNKDGSIRQMDSLGGVFRVIPT--TPRVAEGSGTTSSNTFPSNTTDKKDDGGEDIPE--EEAVC 269 (512)
Q Consensus 194 ~~~~~~~i~RS~SvP~~~k~~s~rr~ds~~g~~rIiP~--~~~~~~~~~~~~s~~s~~~d~~~~~~~~Edi~e--ee~vC 269 (512)
|=+.+..+.|-+-----.|++-++|+|. +|.--||=. -|++.=++.. .+.| --..++|. -.+.|
T Consensus 53 KCesqeraarvrCeLCP~kdGALKkTDn-~GWAHVVCALYIPEVrFgNV~---TMEP--------IiLq~VP~dRfnKtC 120 (900)
T KOG0956|consen 53 KCESQERAARVRCELCPHKDGALKKTDN-GGWAHVVCALYIPEVRFGNVH---TMEP--------IILQDVPHDRFNKTC 120 (900)
T ss_pred hhhhhhhhccceeecccCcccceecccC-CCceEEEEEeeccceeecccc---cccc--------eeeccCchhhhccee
Confidence 4455555555333333368888999999 555555521 2333323321 1212 22445554 34899
Q ss_pred eEcccccCCCC--CceeeccccCCccccccHHHHHHH--H-HHc-----CCccccccccceeecc
Q 010378 270 RICFIELGEGF--DALKMECGCKGELAFAHRECAVKW--F-SIK-----GNKTCEVCKQEVENLP 324 (512)
Q Consensus 270 RICl~e~~e~~--~~Li~PC~CKGsLk~VH~~CL~kW--~-~~k-----g~~~CEICk~~y~nlp 324 (512)
.||.++.-+.. .---|-|+=.|=-+-+|-.|+++- + .+- +.+.|--|+|.|..+.
T Consensus 121 YIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~HfsKlk 185 (900)
T KOG0956|consen 121 YICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHFSKLK 185 (900)
T ss_pred eeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHHHHhh
Confidence 99976532211 122455654444577999999864 1 222 3489999999998764
No 74
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=51.72 E-value=9.8 Score=36.00 Aligned_cols=56 Identities=20% Similarity=0.291 Sum_probs=41.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
.--+|-||.+.. .++.+..|=.|-|. +.----|+.-|-...-.-.|++||+.|+..
T Consensus 79 ~lYeCnIC~etS--~ee~FLKPneCCgY-~iCn~Cya~LWK~~~~ypvCPvCkTSFKss 134 (140)
T PF05290_consen 79 KLYECNICKETS--AEERFLKPNECCGY-SICNACYANLWKFCNLYPVCPVCKTSFKSS 134 (140)
T ss_pred CceeccCccccc--chhhcCCcccccch-HHHHHHHHHHHHHcccCCCCCccccccccc
Confidence 357899998664 45578888777773 444555678898777788999999999854
No 75
>KOG2927 consensus Membrane component of ER protein translocation complex [Intracellular trafficking, secretion, and vesicular transport]
Probab=51.43 E-value=16 Score=39.38 Aligned_cols=61 Identities=20% Similarity=0.428 Sum_probs=40.7
Q ss_pred cccccchhhhhHHHHHHHHHHHHHhhccccceeeecchhHHHHhHHHHhhHhhhhhhhHHHHH
Q 010378 350 VWQDVPILVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWLY 412 (512)
Q Consensus 350 ~Wq~vpvLViIsmLayFcfLEqLlv~~~g~~AiaislPfs~iLGll~s~~a~~mv~~~yiW~y 412 (512)
+|+.+.+++.+.+|+.-|| -|.=..|..++...|++..|+|+++.++++..+++.-.+|+.
T Consensus 189 ~~~vl~~~fvl~tlaivLF--PLWP~~mR~gvyY~sig~~gfl~~IlvLaIvRlILF~I~~il 249 (372)
T KOG2927|consen 189 MWQVLGVLFVLVTLAIVLF--PLWPRRMRQGVYYLSIGAGGFLAFILVLAIVRLILFGITWIL 249 (372)
T ss_pred hHHHHHHHHHHHHHHHHhc--ccCcHHHhcceeeeecchhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4555544444445554444 355678899999999988888888777776666665555554
No 76
>KOG4583 consensus Membrane-associated ER protein involved in stress response (contains ubiquitin-like domain) [Posttranslational modification, protein turnover, chaperones]
Probab=50.60 E-value=33 Score=36.99 Aligned_cols=74 Identities=18% Similarity=0.221 Sum_probs=36.1
Q ss_pred hhhHHHHHHHHHHHHHHHhHhHhhhhccchhhhHhhhhhhccceeeeehhHHHHHHHH--HHHhhh--hcccccCCCccc
Q 010378 405 RKSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR--RRRWQA--QSRHQPVTGEST 480 (512)
Q Consensus 405 ~~~yiW~yA~~qf~~vvl~~hifY~~~~~~~v~ai~la~~~Gfgi~m~~~s~~~~~~~--rr~~~~--~~~~q~~~~~~~ 480 (512)
.+|.=|.|..+.+++.+-+.|++-++.+|--|+++.| .||+..++ |+|.++ .+.+++++++.+
T Consensus 260 ~DwLd~~ysf~r~aillSilyfySSf~RfllVm~aal-------------~iYl~q~g~~r~r~e~~~~~~~~nNn~~p~ 326 (391)
T KOG4583|consen 260 RDWLDWGYSFFRVAILLSILYFYSSFSRFLLVMGAAL-------------FIYLHQLGWFRFRAEAAAAQAQPNNNQEPH 326 (391)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------------HHHHHHhccccccccchhhhcCcccCCCCc
Confidence 5788899987776643323232223444444444222 34444444 333333 344445665544
Q ss_pred CCCCCCccccC
Q 010378 481 QPDQLSSTTRQ 491 (512)
Q Consensus 481 ~~~~~~~~~~~ 491 (512)
-..+-+...+.
T Consensus 327 vnNndp~ann~ 337 (391)
T KOG4583|consen 327 VNNNDPNANNG 337 (391)
T ss_pred ccCCCccccCC
Confidence 44444444443
No 77
>TIGR02741 TraQ type-F conjugative transfer system pilin chaperone TraQ. This protein makes a specific interaction with the pilin (TraA) protein to aid its transfer through the inner membrane during the process of F-type conjugative pilus assembly.
Probab=48.55 E-value=17 Score=31.27 Aligned_cols=48 Identities=17% Similarity=0.384 Sum_probs=38.9
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhccchhhhHhhhhhhccceeeeehhHHHHHHHH
Q 010378 409 IWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDALR 462 (512)
Q Consensus 409 iW~yA~~qf~~vvl~~hifY~~~~~~~v~ai~la~~~Gfgi~m~~~s~~~~~~~ 462 (512)
+|+++ .| +++||.-+++..++-+|++|+..-|.|++..|.+=++..+-
T Consensus 16 mwv~~---lG---~wfhiVarlVy~~P~mA~~laeliav~lVl~G~YRiLdawi 63 (80)
T TIGR02741 16 LWVFS---LG---IWFHIVSRLVYRKPWMAFFLAELIAVILVLWGAYRVLDAWI 63 (80)
T ss_pred chhhH---hh---HHHHHHHHHHHcChHHHHHHHHHHHHHHHHhhHHHHHHHHH
Confidence 57765 33 56799999999999999999999999998888876665543
No 78
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=48.43 E-value=10 Score=42.16 Aligned_cols=53 Identities=26% Similarity=0.725 Sum_probs=38.6
Q ss_pred CCCCCCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 256 DDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 256 ~~~~Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
....|++.+....|+||+.+. ..-+.+|. |-.|+.+|...+ -.|+.|+....+
T Consensus 469 ~~~~~~l~~~~~~~~~~~~~~----~~~~~~~~--------~~~~l~~~~~~~--~~~pl~~~~~~~ 521 (543)
T KOG0802|consen 469 EATPSQLREPNDVCAICYQEM----SARITPCS--------HALCLRKWLYVQ--EVCPLCHTYMKE 521 (543)
T ss_pred CCChhhhhcccCcchHHHHHH----Hhcccccc--------chhHHHhhhhhc--cccCCCchhhhc
Confidence 345566677889999998764 12344555 999999999774 479999877654
No 79
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=46.94 E-value=18 Score=38.98 Aligned_cols=54 Identities=24% Similarity=0.618 Sum_probs=37.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcC--Cccccccccceeecce
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKG--NKTCEVCKQEVENLPV 325 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg--~~~CEICk~~y~nlpv 325 (512)
|++.|-.|.++..- .+--..||.|. | +-|---|-..+. +-.|+-|+..|....|
T Consensus 13 eed~cplcie~mdi-tdknf~pc~cg----y--~ic~fc~~~irq~lngrcpacrr~y~denv 68 (480)
T COG5175 13 EEDYCPLCIEPMDI-TDKNFFPCPCG----Y--QICQFCYNNIRQNLNGRCPACRRKYDDENV 68 (480)
T ss_pred ccccCccccccccc-ccCCcccCCcc----c--HHHHHHHHHHHhhccCCChHhhhhccccce
Confidence 45679999977643 33446899984 2 456666766654 5799999999986544
No 80
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=45.90 E-value=11 Score=42.66 Aligned_cols=49 Identities=24% Similarity=0.479 Sum_probs=37.6
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH---cCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI---KGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~---kg~~~CEICk~~y~ 321 (512)
++.+|.+|++.. ++.+..-|. +-+-+.|+..++.. ..+.+|+.|.-...
T Consensus 535 ~~~~C~lc~d~a---ed~i~s~Ch-----H~FCrlCi~eyv~~f~~~~nvtCP~C~i~Ls 586 (791)
T KOG1002|consen 535 GEVECGLCHDPA---EDYIESSCH-----HKFCRLCIKEYVESFMENNNVTCPVCHIGLS 586 (791)
T ss_pred CceeecccCChh---hhhHhhhhh-----HHHHHHHHHHHHHhhhcccCCCCcccccccc
Confidence 678999999663 356778887 55678899888753 45799999997765
No 81
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=43.91 E-value=10 Score=40.02 Aligned_cols=48 Identities=21% Similarity=0.441 Sum_probs=35.5
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
-..||||.+-. .-+++.+|. +-+-.-|+.+.+... -.|++|..++...
T Consensus 25 ~lrC~IC~~~i---~ip~~TtCg-----HtFCslCIR~hL~~q--p~CP~Cr~~~~es 72 (391)
T COG5432 25 MLRCRICDCRI---SIPCETTCG-----HTFCSLCIRRHLGTQ--PFCPVCREDPCES 72 (391)
T ss_pred HHHhhhhhhee---ecceecccc-----cchhHHHHHHHhcCC--CCCccccccHHhh
Confidence 46899998554 236788887 556677888877553 5899999988764
No 82
>TIGR02163 napH_ ferredoxin-type protein, NapH/MauN family. Most members of this family are the NapH protein, found next to NapG,in operons that encode the periplasmic nitrate reductase. Some species with this reductase lack NapC but accomplish electron transfer to NapAB in some other manner, likely to involve NapH, NapG, and/or some other protein. A few members of this protein are designated MauN and are found in methylamine utilization operons in species that appear to lack a periplasmic nitrate reductase.
Probab=43.79 E-value=18 Score=36.31 Aligned_cols=55 Identities=24% Similarity=0.180 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHH----HHHhhccccceeeecchhHHHHhHHHHhhHhhhhhhhHHHH
Q 010378 357 LVIVSMLAYFCFLE----ELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWL 411 (512)
Q Consensus 357 LViIsmLayFcfLE----qLlv~~~g~~AiaislPfs~iLGll~s~~a~~mv~~~yiW~ 411 (512)
++.+++++.|+..- +++.+++..+-+.=.+|.++-+|.|-++.+...+.-.+++.
T Consensus 7 ~~~~~~~~lf~~~~~~~~~~~~G~l~~s~~~~~~~l~dP~~~lq~~~a~~~~~~~~~~~ 65 (255)
T TIGR02163 7 LVQLSILGLFLLGPYAGVWILKGNLSSSRLLGTIPLSDPLITLQILLAGHSPPTNALIG 65 (255)
T ss_pred HHHHHHHHHHHcchhhcceEEEecchHHHhcCCccCcCHHHHHHHHHhcChhhHHHHHH
Confidence 45555666665422 22334444333332478888899888888877555454444
No 83
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.95 E-value=20 Score=36.88 Aligned_cols=49 Identities=24% Similarity=0.525 Sum_probs=38.9
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc------CCccccccccce
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK------GNKTCEVCKQEV 320 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k------g~~~CEICk~~y 320 (512)
..-||.|-..+. +++...+-|- +++|-+||..|-..- ....|+-|..++
T Consensus 50 ~pNC~LC~t~La-~gdt~RLvCy-----hlfHW~ClneraA~lPanTAPaGyqCP~Cs~ei 104 (299)
T KOG3970|consen 50 NPNCRLCNTPLA-SGDTTRLVCY-----HLFHWKCLNERAANLPANTAPAGYQCPCCSQEI 104 (299)
T ss_pred CCCCceeCCccc-cCcceeehhh-----hhHHHHHhhHHHhhCCCcCCCCcccCCCCCCcc
Confidence 357999987764 5677788886 899999999998653 237899999874
No 84
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=42.92 E-value=16 Score=39.59 Aligned_cols=48 Identities=25% Similarity=0.569 Sum_probs=33.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
|+..|.||+.+. -+....||+ +---+.|+.+-+. +++.|-.||.....
T Consensus 421 Ed~lCpICyA~p---i~Avf~PC~-----H~SC~~CI~qHlm--N~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 421 EDNLCPICYAGP---INAVFAPCS-----HRSCYGCITQHLM--NCKRCFFCKTTVID 468 (489)
T ss_pred ccccCcceeccc---chhhccCCC-----CchHHHHHHHHHh--cCCeeeEecceeee
Confidence 678999999663 357899998 1222345555443 46899999999874
No 85
>PRK09477 napH quinol dehydrogenase membrane component; Provisional
Probab=42.05 E-value=21 Score=36.23 Aligned_cols=28 Identities=18% Similarity=0.097 Sum_probs=20.8
Q ss_pred chhHHHHhHHHHhhHhhhhhhhHHHHHH
Q 010378 386 LPFSCILGLLASTTATTMVRKSFIWLYA 413 (512)
Q Consensus 386 lPfs~iLGll~s~~a~~mv~~~yiW~yA 413 (512)
+|+++-+|++-++.+..++.-.++|..+
T Consensus 47 ~~~~dp~~~~q~~~a~~~~~~~~l~g~~ 74 (271)
T PRK09477 47 IPLTDPLATLQSLAAGHLPATVALIGAL 74 (271)
T ss_pred ccccCHHHHHHHHHhcChhHHHHHHHHH
Confidence 7888888888888888777666665544
No 86
>PF01146 Caveolin: Caveolin; InterPro: IPR001612 Caveolins [, , ] are a family of integral membrane proteins which are the principal components of caveolae membranes. Cavoleae are flask-shaped plasma membrane invaginations whose exact cellular function is not yet clear. Caveolins may act as scaffolding proteins within caveolar membranes by compartmentalizing and concentrating signalling molecules. Various classes of signalling molecules, including G-protein subunits, receptor and non-receptor tyrosine kinases, endothelial nitric oxide synthase (eNOS), and small GTPases, bind Cav-1 through its 'caveolin-scaffolding domain'. Currently, three different forms of caveolins are known: caveolin-1 (or VIP21), caveolin-2 and caveolin-3 (or M-caveolin). Caveolins are proteins of about 20 Kd, they form high molecular mass homo-oligomers. Structurally they seem to have N-terminal and C-terminal hydrophilic segments and a long central transmembrane domain that probably forms a hairpin in the membrane. Both extremities are known to face the cytoplasm. Caveolae are enriched with cholesterol and Cav-1 is one of the few proteins that binds cholesterol tightly and specifically.
Probab=41.79 E-value=22 Score=33.87 Aligned_cols=25 Identities=20% Similarity=0.542 Sum_probs=20.1
Q ss_pred eecchhHHHHhHHHHhhHhhhhhhhHHHHH
Q 010378 383 AISLPFSCILGLLASTTATTMVRKSFIWLY 412 (512)
Q Consensus 383 aislPfs~iLGll~s~~a~~mv~~~yiW~y 412 (512)
++++|+|++.|+++.+++. -+||++
T Consensus 77 ilaiP~A~~~Gi~FA~lsf-----~hIW~v 101 (148)
T PF01146_consen 77 ILAIPLAFLWGILFACLSF-----LHIWCV 101 (148)
T ss_pred HHHHHHHHHHHHHHHHHHH-----HHHHHH
Confidence 4588999999999987766 577774
No 87
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=39.55 E-value=18 Score=36.54 Aligned_cols=55 Identities=27% Similarity=0.570 Sum_probs=38.8
Q ss_pred CCCCCCCCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 254 KKDDGGEDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 254 ~~~~~~Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
...+.+|+|| ..|-||-.+. ..+....|. +++-..|+.+=+ +....|-+|+....
T Consensus 187 v~~~~~e~IP---F~C~iCKkdy---~spvvt~CG-----H~FC~~Cai~~y--~kg~~C~~Cgk~t~ 241 (259)
T COG5152 187 VISGPGEKIP---FLCGICKKDY---ESPVVTECG-----HSFCSLCAIRKY--QKGDECGVCGKATY 241 (259)
T ss_pred cccCCCCCCc---eeehhchhhc---cchhhhhcc-----hhHHHHHHHHHh--ccCCcceecchhhc
Confidence 4456777775 7999998554 347888898 556666665543 45678999998754
No 88
>COG2995 PqiA Uncharacterized paraquat-inducible protein A [Function unknown]
Probab=39.31 E-value=14 Score=40.27 Aligned_cols=81 Identities=21% Similarity=0.199 Sum_probs=49.3
Q ss_pred cchhHHHHhHHHHhhHhhhhhhhHHHHHHHHHHHHHHHhHhHhhhhccchhhhHhhhhhhcc-ceeeeehhHHHHHHHH-
Q 010378 385 SLPFSCILGLLASTTATTMVRKSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAG-FGITMAGTSILTDALR- 462 (512)
Q Consensus 385 slPfs~iLGll~s~~a~~mv~~~yiW~yA~~qf~~vvl~~hifY~~~~~~~v~ai~la~~~G-fgi~m~~~s~~~~~~~- 462 (512)
.+|.+.+-++-+..-.+.|--=-|+|.+..+=.++||+++-||.-+.++-. +++++...-+ -+-..-.-..+.++..
T Consensus 272 llPI~i~~~~G~~~~dTI~sGV~~L~~~Gs~~vA~VVFiASilVP~~Ki~~-la~Ll~~~~fk~~~~~k~~~~lyr~v~~ 350 (418)
T COG2995 272 LLPIMITYLLGARQEDTILSGVISLWSSGSYPVAAVVFLASILVPLLKIIA-LAWLLLSAHFKRQRGLKTRMLLYRIVEF 350 (418)
T ss_pred ccceEEEecCCCccccHHHHHHHHHHHCCChhHHHHHHHHHHHHHHHHHHH-HHHHHHHhhcccccChHHHHHHHHHHHH
Confidence 456555555555555555555578888777779999999999999988654 4555554421 1222222344444444
Q ss_pred HHHh
Q 010378 463 RRRW 466 (512)
Q Consensus 463 rr~~ 466 (512)
.+||
T Consensus 351 IGRW 354 (418)
T COG2995 351 VGRW 354 (418)
T ss_pred Hcch
Confidence 5666
No 89
>KOG4323 consensus Polycomb-like PHD Zn-finger protein [General function prediction only]
Probab=38.95 E-value=14 Score=40.90 Aligned_cols=56 Identities=16% Similarity=0.394 Sum_probs=40.7
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH------cCCccccccccceeecc
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI------KGNKTCEVCKQEVENLP 324 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~------kg~~~CEICk~~y~nlp 324 (512)
..+|-.|++......+.++.=|+|+ .++|+.|-+--+.. ...+.|.+|...-..++
T Consensus 168 n~qc~vC~~g~~~~~NrmlqC~~C~---~~fHq~Chqp~i~~~l~~D~~~~w~C~~C~~~~~~~~ 229 (464)
T KOG4323|consen 168 NLQCSVCYCGGPGAGNRMLQCDKCR---QWYHQACHQPLIKDELAGDPFYEWFCDVCNRGPKKVP 229 (464)
T ss_pred cceeeeeecCCcCccceeeeecccc---cHHHHHhccCCCCHhhccCccceEeehhhccchhhcc
Confidence 3459999866554567777778886 68999997665532 23589999998876554
No 90
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=38.31 E-value=12 Score=30.80 Aligned_cols=49 Identities=18% Similarity=0.550 Sum_probs=30.0
Q ss_pred CeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
++|.||++..- +..+--|. --..-++|..+-.+- +.-+|+||+.+.+.+
T Consensus 8 dECTICye~pv---dsVlYtCG----HMCmCy~Cg~rl~~~-~~g~CPiCRapi~dv 56 (62)
T KOG4172|consen 8 DECTICYEHPV---DSVLYTCG----HMCMCYACGLRLKKA-LHGCCPICRAPIKDV 56 (62)
T ss_pred cceeeeccCcc---hHHHHHcc----hHHhHHHHHHHHHHc-cCCcCcchhhHHHHH
Confidence 68999996642 22333333 011235887665443 567999999987754
No 91
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=37.07 E-value=14 Score=39.87 Aligned_cols=47 Identities=23% Similarity=0.429 Sum_probs=34.8
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
--.|-||++=. .-+++.||+ +-+-.-|+.+.+.. ...|+.|..++.-
T Consensus 23 lLRC~IC~eyf---~ip~itpCs-----HtfCSlCIR~~L~~--~p~CP~C~~~~~E 69 (442)
T KOG0287|consen 23 LLRCGICFEYF---NIPMITPCS-----HTFCSLCIRKFLSY--KPQCPTCCVTVTE 69 (442)
T ss_pred HHHHhHHHHHh---cCceecccc-----chHHHHHHHHHhcc--CCCCCceecccch
Confidence 36899998543 247899988 44556678888866 4689999988763
No 92
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=36.15 E-value=21 Score=41.54 Aligned_cols=55 Identities=29% Similarity=0.578 Sum_probs=38.5
Q ss_pred CeeeEcccccCCCCCceeeccccCCc--cccccHHHH-------HHHHHHcC-------Cccccccccceeecc
Q 010378 267 AVCRICFIELGEGFDALKMECGCKGE--LAFAHRECA-------VKWFSIKG-------NKTCEVCKQEVENLP 324 (512)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CKGs--Lk~VH~~CL-------~kW~~~kg-------~~~CEICk~~y~nlp 324 (512)
--|.+|-+|-+=.+++|+- |+|. --.||+.|- =.||-.|- ..+||+|-+++--++
T Consensus 6 GGCCVCSDErGWaeNPLVY---CDG~nCsVAVHQaCYGIvqVPtGpWfCrKCesqeraarvrCeLCP~kdGALK 76 (900)
T KOG0956|consen 6 GGCCVCSDERGWAENPLVY---CDGHNCSVAVHQACYGIVQVPTGPWFCRKCESQERAARVRCELCPHKDGALK 76 (900)
T ss_pred cceeeecCcCCCccCceee---ecCCCceeeeehhcceeEecCCCchhhhhhhhhhhhccceeecccCccccee
Confidence 4688998776655677652 3332 235999997 46986552 489999999988664
No 93
>PF10947 DUF2628: Protein of unknown function (DUF2628) ; InterPro: IPR024399 Some members in this family of proteins have been annotated as YigF. Their function is currently unknown.
Probab=36.03 E-value=58 Score=28.32 Aligned_cols=57 Identities=21% Similarity=0.233 Sum_probs=31.8
Q ss_pred hhhhHHHHHHHHHHHHHHHhHhHhhhhccchhhhHhhhhhhccceeeeehhHHHHHHH
Q 010378 404 VRKSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDAL 461 (512)
Q Consensus 404 v~~~yiW~yA~~qf~~vvl~~hifY~~~~~~~v~ai~la~~~Gfgi~m~~~s~~~~~~ 461 (512)
..-+-+|.++.+-+++ .++..+....++....+...+.-+..+..+|.+|.++...+
T Consensus 50 ~l~r~mw~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~l~l~~~~~~g~~~n~~y~~~~ 106 (108)
T PF10947_consen 50 LLYRKMWLYAIIFLAL-LVALAIILILLGFPPGLGLGLSLAISLFFGMFANYWYYRHL 106 (108)
T ss_pred HHHHHHHHHHHHHHHH-HHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3445667766443333 34445555555555444545555556667778888854443
No 94
>PF04641 Rtf2: Rtf2 RING-finger
Probab=35.50 E-value=50 Score=33.40 Aligned_cols=53 Identities=21% Similarity=0.420 Sum_probs=37.2
Q ss_pred CCCCeeeEcccccCCCCC-ceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecc
Q 010378 264 EEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~-~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlp 324 (512)
+...+|-|+..+...... ..+.||.| -+-+.||+.- +....|++|+.+|...-
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~-----V~s~~alke~---k~~~~Cp~c~~~f~~~D 164 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGC-----VFSEKALKEL---KKSKKCPVCGKPFTEED 164 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCC-----EeeHHHHHhh---cccccccccCCccccCC
Confidence 356788888777632222 45789997 6777887775 24567999999999654
No 95
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=32.79 E-value=42 Score=30.94 Aligned_cols=32 Identities=22% Similarity=0.159 Sum_probs=20.2
Q ss_pred ccchhhhHhhhhhhccceeeeehhHHHHHHHH
Q 010378 431 LHMQAVIVVLLSTFAGFGITMAGTSILTDALR 462 (512)
Q Consensus 431 ~~~~~v~ai~la~~~Gfgi~m~~~s~~~~~~~ 462 (512)
.+.+..+.+++.-|.|+.++..=-.+|+.|++
T Consensus 105 ~~~~~~~Rvllgl~~al~vlvAEv~l~~~y~~ 136 (142)
T PF11712_consen 105 GGWSFPYRVLLGLFGALLVLVAEVVLYIRYLR 136 (142)
T ss_pred cccchHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44555566666666666666666666666665
No 96
>PF01440 Gemini_AL2: Geminivirus AL2 protein; InterPro: IPR000942 Geminiviruses are characterised by a genome of circular single-stranded DNA encapsidated in twinned (geminate) quasi-isometric particles, from which the group derives its name []. Most geminiviruses can be divided into two subgroups on the basis of host range and/or insect vector: i.e. those that infect dicotyledenous plants and are transmitted by the same whitefly species, and those that infect monocotyledenous plants and are transmitted by different leafhopper vectors. The genomes of the whitefly-transmitted African cassava mosaic virus, Tomato golden mosaic virus (TGMV) and Bean golden mosaic virus (BGMV) possess a bipartite genome. By contrast, only a single DNA component has been identified for the leafhopper-transmitted Maize streak virus (MSV) and Wheat dwarf virus (WDV) [, ]. Beet curly top virus (BCTV), and Tobacco yellow dwarf virus belong to a third possible subgroup. Like MSV and WDV, BCTV is transmitted by a specific leafhopper species, yet like the whitefly-transmitted geminiviruses it has a host range confined to dicotyledenous plants. Sequence comparison of the whitefly-transmitted Squash leaf curl virus (SqLCV) and Tomato yellow leaf curl virus (TYLCV) with the genomic components of TGMV and BGMV reveals a close evolutionary relationship [, , ]. Amino acid sequence alignments of Potato yellow mosaic virus (PYMV) proteins with those encoded by other geminiviruses show that PYMV is closely related to geminiviruses isolated from the New World, especially in the putative coat protein gene regions []. Comparison of MSV DNA-encoded proteins with those of other geminiviruses infecting monocotyledonous plants, including Panicum streak virus [] and Miscanthus streak virus (MiSV) [], reveal high levels of similarity.; GO: 0005198 structural molecule activity, 0019028 viral capsid
Probab=31.19 E-value=8.3 Score=36.24 Aligned_cols=32 Identities=25% Similarity=0.766 Sum_probs=26.9
Q ss_pred ceeeccccCCccccccHHHHHHHHHHcCCcccccc
Q 010378 282 ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVC 316 (512)
Q Consensus 282 ~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEIC 316 (512)
.+.++|.|. .|+|..|-...|.++|+..|--.
T Consensus 32 RIDL~CGCS---yyihinC~~hGFTHRGthhCsS~ 63 (134)
T PF01440_consen 32 RIDLPCGCS---YYIHINCHNHGFTHRGTHHCSSS 63 (134)
T ss_pred ccccCCCCE---EEeecccCCCCcCCCcCccCCCc
Confidence 566899996 78999999999999998877533
No 97
>PF13571 DUF4133: Domain of unknown function (DUF4133)
Probab=30.88 E-value=58 Score=29.23 Aligned_cols=46 Identities=15% Similarity=0.299 Sum_probs=33.4
Q ss_pred hhHHHHHHHHHHHHHHHhHhHhhhhccchhhhHhhhhhhccceeeeeh
Q 010378 406 KSFIWLYAFIQFGLVVLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAG 453 (512)
Q Consensus 406 ~~yiW~yA~~qf~~vvl~~hifY~~~~~~~v~ai~la~~~Gfgi~m~~ 453 (512)
..|+|.+|.-=.++.++| -|.| +.|++..+||.+...+|-.+.+.+
T Consensus 16 aQYl~~faGgll~~~il~-~iLY-i~Gv~~~ici~~~~~~~~~lv~~~ 61 (96)
T PF13571_consen 16 AQYLFYFAGGLLGLFILF-VILY-IAGVNQWICIGFGVVSGSLLVWQT 61 (96)
T ss_pred HHHHHHHHHHHHHHHHHH-HHHH-HhccchhhhHHHHHHHhhhhheee
Confidence 489999985555544444 5556 889999999999888776655543
No 98
>PF14012 DUF4229: Protein of unknown function (DUF4229)
Probab=30.55 E-value=72 Score=26.54 Aligned_cols=49 Identities=24% Similarity=0.426 Sum_probs=29.8
Q ss_pred HHHHHHHHHHHHHHhHhHhhhhccchhh------hHhhhhhhccceeeeehhHHHHHHHH
Q 010378 409 IWLYAFIQFGLVVLSAHLFYSLLHMQAV------IVVLLSTFAGFGITMAGTSILTDALR 462 (512)
Q Consensus 409 iW~yA~~qf~~vvl~~hifY~~~~~~~v------~ai~la~~~Gfgi~m~~~s~~~~~~~ 462 (512)
+|.|....+++++..+-++| .++.... ++.++|-+ |+|..++++..=+|
T Consensus 1 v~~Ytl~Rl~lfv~~~~vi~-~v~~~~~~~~p~~~~~l~A~v----is~~lS~~ll~~~R 55 (69)
T PF14012_consen 1 VLRYTLARLGLFVVLFAVIW-LVGLLIGVEVPLLVAALLALV----ISMPLSYVLLRRLR 55 (69)
T ss_pred CHHHHHHHHHHHHHHHHHHH-HHHHHhcccchHHHHHHHHHH----HHHHHHHHHHHHHH
Confidence 36788888888777777777 4454444 44444444 66666766443333
No 99
>KOG3817 consensus Uncharacterized conserved protein [Function unknown]
Probab=30.26 E-value=1.9e+02 Score=31.84 Aligned_cols=20 Identities=25% Similarity=0.466 Sum_probs=14.2
Q ss_pred HHHHhHHHHhhHhhhhhhhH
Q 010378 389 SCILGLLASTTATTMVRKSF 408 (512)
Q Consensus 389 s~iLGll~s~~a~~mv~~~y 408 (512)
+|++|+++|+..+.++..++
T Consensus 167 G~v~GilaSLl~Viflv~rf 186 (452)
T KOG3817|consen 167 GIVIGILASLLVVIFLVARF 186 (452)
T ss_pred ccHHHHHHHHHHHHHHHHHh
Confidence 56889998887766555554
No 100
>PF03839 Sec62: Translocation protein Sec62; InterPro: IPR004728 Members of the NSCC2 family have been sequenced from various yeast, fungal and animals species including Saccharomyces cerevisiae, Drosophila melanogaster and Homo sapiens. These proteins are the Sec62 proteins, believed to be associated with the Sec61 and Sec63 constituents of the general protein secretary systems of yeast microsomes. They are also the non-selective cation (NS) channels of the mammalian cytoplasmic membrane. The yeast Sec62 protein has been shown to be essential for cell growth. The mammalian NS channel proteins have been implicated in platelet derived growth factor(PGDF) dependent single channel current in fibroblasts. These channels are essentially closed in serum deprived tissue-culture cells and are specifically opened by exposure to PDGF. These channels are reported to exhibit equal selectivity for Na+, K+ and Cs+ with low permeability to Ca2+, and no permeability to anions.; GO: 0008565 protein transporter activity, 0015031 protein transport, 0016021 integral to membrane
Probab=29.41 E-value=79 Score=32.08 Aligned_cols=55 Identities=22% Similarity=0.370 Sum_probs=36.4
Q ss_pred hhhhHHHHHHHHHHHHHhhccccceeeecchhHHHHhHHHHhhHhhhhhhhHHHHHH
Q 010378 357 LVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWLYA 413 (512)
Q Consensus 357 LViIsmLayFcfLEqLlv~~~g~~AiaislPfs~iLGll~s~~a~~mv~~~yiW~yA 413 (512)
++++.+++ |.|--|.=..+..+.-.+|+.+.++||+|..|+.+.+++--.+|+..
T Consensus 117 ~~~~~v~a--~~lFPlWP~~~r~gv~YlS~~~lgll~~~~~laivRlilf~i~w~~~ 171 (224)
T PF03839_consen 117 LLLVGVIA--ICLFPLWPRWMRQGVYYLSVGALGLLGLFFALAIVRLILFLITWFFT 171 (224)
T ss_pred HHHHHHHH--HHhhhcChHHHhheeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 33344443 33445556777778888888877788888887777776666666653
No 101
>KOG1973 consensus Chromatin remodeling protein, contains PHD Zn-finger [Chromatin structure and dynamics]
Probab=28.75 E-value=26 Score=35.91 Aligned_cols=54 Identities=26% Similarity=0.371 Sum_probs=33.5
Q ss_pred CCCCCeeeEcccccCCCCCceeeccccCCcc-ccccHHHHHHHHHHcCCcccccccccee
Q 010378 263 PEEEAVCRICFIELGEGFDALKMECGCKGEL-AFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~~~Li~PC~CKGsL-k~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
+++...|. |.... .++ .-.|.|.+=- .|+|..|.=-=..-+|.|.|+-|+..-.
T Consensus 216 ~~e~~yC~-Cnqvs--yg~--Mi~CDn~~C~~eWFH~~CVGL~~~PkgkWyC~~C~~~~~ 270 (274)
T KOG1973|consen 216 PDEPTYCI-CNQVS--YGK--MIGCDNPGCPIEWFHFTCVGLKTKPKGKWYCPRCKAENK 270 (274)
T ss_pred CCCCEEEE-ecccc--ccc--ccccCCCCCCcceEEEeccccccCCCCcccchhhhhhhh
Confidence 33455554 65332 222 3457776554 8999999543333468899999987643
No 102
>PRK12652 putative monovalent cation/H+ antiporter subunit E; Reviewed
Probab=28.04 E-value=92 Score=33.38 Aligned_cols=23 Identities=22% Similarity=0.288 Sum_probs=18.5
Q ss_pred hhhhHhhhhhhccceeeeehhHH
Q 010378 434 QAVIVVLLSTFAGFGITMAGTSI 456 (512)
Q Consensus 434 ~~v~ai~la~~~Gfgi~m~~~s~ 456 (512)
..++.|-+..-+.+|+++..|+|
T Consensus 258 P~iV~vpl~~~sd~~~t~lAnsI 280 (357)
T PRK12652 258 PTMVRVRAAVRSGLPLTTLANSI 280 (357)
T ss_pred CeEEEEeccCCChHHHHHHHHHH
Confidence 56778888888888888888877
No 103
>KOG2735 consensus Phosphatidylserine synthase [Lipid transport and metabolism]
Probab=27.93 E-value=98 Score=34.26 Aligned_cols=36 Identities=28% Similarity=0.191 Sum_probs=32.7
Q ss_pred HHHHHHHhhccccceeeecchhHHHHhHHHHhhHhh
Q 010378 367 CFLEELLVGKMKSGAIAISLPFSCILGLLASTTATT 402 (512)
Q Consensus 367 cfLEqLlv~~~g~~AiaislPfs~iLGll~s~~a~~ 402 (512)
|++|.+++-|+|..-.....++++++-++.+++++.
T Consensus 382 ~~~El~IciKfg~~~f~~t~~~~Ivlw~l~~v~~t~ 417 (466)
T KOG2735|consen 382 CALELLICIKFGSHMFIKTQINYIVLWLLMGVIGTF 417 (466)
T ss_pred HHHHhhhheeeCCceeeecchhHHHHHHHHHHHHHH
Confidence 999999999999999999999999998888877665
No 104
>PF07331 TctB: Tripartite tricarboxylate transporter TctB family; InterPro: IPR009936 This entry contains bacterial proteins of around 150 residues in length, which have 4 transmembrane domains. Some of the sequences in the entry are annotated as the TctB subunit of the tripartite tricarboxylate transport(TTT) family. However there is no direct evidence to support this annotation as characterised members of this family are not associated with the entry.
Probab=27.00 E-value=2.4e+02 Score=24.98 Aligned_cols=20 Identities=20% Similarity=0.298 Sum_probs=11.8
Q ss_pred HHHHHHHHHhHhHhhhhccc
Q 010378 414 FIQFGLVVLSAHLFYSLLHM 433 (512)
Q Consensus 414 ~~qf~~vvl~~hifY~~~~~ 433 (512)
..-..+.+++..+|+.++++
T Consensus 119 ~~s~~~~~~i~~~F~~~L~v 138 (141)
T PF07331_consen 119 LISVVFAAVIYFVFAKLLGV 138 (141)
T ss_pred HHHHHHHHHHHHHHHHHHCC
Confidence 34455556666667676665
No 105
>KOG4443 consensus Putative transcription factor HALR/MLL3, involved in embryonic development [General function prediction only]
Probab=26.79 E-value=30 Score=39.99 Aligned_cols=33 Identities=24% Similarity=0.564 Sum_probs=25.7
Q ss_pred eeeccccCCccccccHHHHHHHHHHc---------CCccccccc
Q 010378 283 LKMECGCKGELAFAHRECAVKWFSIK---------GNKTCEVCK 317 (512)
Q Consensus 283 Li~PC~CKGsLk~VH~~CL~kW~~~k---------g~~~CEICk 317 (512)
...-|+|+| ++.|..|+.-|+.+. ..+.||-|+
T Consensus 34 ~m~ac~~c~--~~yH~~cvt~~~~~~~l~~gWrC~~crvCe~c~ 75 (694)
T KOG4443|consen 34 RLLACSDCG--QKYHPYCVTSWAQHAVLSGGWRCPSCRVCEACG 75 (694)
T ss_pred cchhhhhhc--ccCCcchhhHHHhHHHhcCCcccCCceeeeecc
Confidence 456688887 578999999999875 246788888
No 106
>PF15013 CCSMST1: CCSMST1 family
Probab=26.54 E-value=38 Score=29.24 Aligned_cols=21 Identities=43% Similarity=0.827 Sum_probs=12.6
Q ss_pred ccccccchhhh-hHHHHHHHHH
Q 010378 349 RVWQDVPILVI-VSMLAYFCFL 369 (512)
Q Consensus 349 r~Wq~vpvLVi-IsmLayFcfL 369 (512)
.-||-.|+.+- +..|.|||||
T Consensus 29 PWyq~~~is~sl~~fliyFC~l 50 (77)
T PF15013_consen 29 PWYQVYPISLSLAAFLIYFCFL 50 (77)
T ss_pred cceeeehhHHHHHHHHHHHhhc
Confidence 34555554322 2477999987
No 107
>KOG0955 consensus PHD finger protein BR140/LIN-49 [General function prediction only]
Probab=25.97 E-value=26 Score=42.45 Aligned_cols=54 Identities=30% Similarity=0.457 Sum_probs=35.1
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
+..+|.||.+.++...+. +.-|. |=--+||++|.-.=+..-|.|.|--|.+.=+
T Consensus 218 ~D~~C~iC~~~~~~n~n~-ivfCD--~Cnl~VHq~Cygi~~ipeg~WlCr~Cl~s~~ 271 (1051)
T KOG0955|consen 218 EDAVCCICLDGECQNSNV-IVFCD--GCNLAVHQECYGIPFIPEGQWLCRRCLQSPQ 271 (1051)
T ss_pred CCccceeecccccCCCce-EEEcC--CCcchhhhhccCCCCCCCCcEeehhhccCcC
Confidence 568999999886643343 33332 2226899999773333456788888877644
No 108
>PF11712 Vma12: Endoplasmic reticulum-based factor for assembly of V-ATPase; InterPro: IPR021013 ATPases (or ATP synthases) are membrane-bound enzyme complexes/ion transporters that combine ATP synthesis and/or hydrolysis with the transport of protons across a membrane. ATPases can harness the energy from a proton gradient, using the flux of ions across the membrane via the ATPase proton channel to drive the synthesis of ATP. Some ATPases work in reverse, using the energy from the hydrolysis of ATP to create a proton gradient. There are different types of ATPases, which can differ in function (ATP synthesis and/or hydrolysis), structure (e.g., F-, V- and A-ATPases, which contain rotary motors) and in the type of ions they transport [, ]. The different types include: F-ATPases (F1F0-ATPases), which are found in mitochondria, chloroplasts and bacterial plasma membranes where they are the prime producers of ATP, using the proton gradient generated by oxidative phosphorylation (mitochondria) or photosynthesis (chloroplasts). V-ATPases (V1V0-ATPases), which are primarily found in eukaryotic vacuoles and catalyse ATP hydrolysis to transport solutes and lower pH in organelles. A-ATPases (A1A0-ATPases), which are found in Archaea and function like F-ATPases (though with respect to their structure and some inhibitor responses, A-ATPases are more closely related to the V-ATPases). P-ATPases (E1E2-ATPases), which are found in bacteria and in eukaryotic plasma membranes and organelles, and function to transport a variety of different ions across membranes. E-ATPases, which are cell-surface enzymes that hydrolyse a range of NTPs, including extracellular ATP. V-ATPases (also known as V1V0-ATPase or vacuolar ATPase) (3.6.3.14 from EC) are found in the eukaryotic endomembrane system, and in the plasma membrane of prokaryotes and certain specialised eukaryotic cells. V-ATPases hydrolyse ATP to drive a proton pump, and are involved in a variety of vital intra- and inter-cellular processes such as receptor mediated endocytosis, protein trafficking, active transport of metabolites, homeostasis and neurotransmitter release []. V-ATPases are composed of two linked complexes: the V1 complex (subunits A-H) contains the catalytic core that hydrolyses ATP, while the V0 complex (subunits a, c, c', c'', d) forms the membrane-spanning pore. V-ATPases may have an additional role in membrane fusion through binding to t-SNARE proteins []. The yeast vacuolar proton-translocating ATPase (V-ATPase) is the best characterised member of the V-ATPase family. A total of thirteen genes are required for encoding the subunits of the enzyme complex itself and an additional three for providing factors necessary for the assembly of the whole. Vma12 is one of these latter, all three of which are localised to the endoplasmic reticulum [].
Probab=25.65 E-value=88 Score=28.86 Aligned_cols=36 Identities=28% Similarity=0.421 Sum_probs=19.8
Q ss_pred hhhHHHHHHHHHHHHHhhcccccee--eecchhHHHHhHHHHhh
Q 010378 358 VIVSMLAYFCFLEELLVGKMKSGAI--AISLPFSCILGLLASTT 399 (512)
Q Consensus 358 ViIsmLayFcfLEqLlv~~~g~~Ai--aislPfs~iLGll~s~~ 399 (512)
++++|++-|+|.- +++..+ -++.++-.+|||+++++
T Consensus 85 ilvsv~~~~~~~~------~~~~~~~~~~~~~~Rvllgl~~al~ 122 (142)
T PF11712_consen 85 ILVSVFAVFFAGW------YWAGYSFGGWSFPYRVLLGLFGALL 122 (142)
T ss_pred HHHHHHHHHHHHH------HHHHHhhcccchHHHHHHHHHHHHH
Confidence 5556666555432 122211 25667777788888744
No 109
>KOG3972 consensus Predicted membrane protein [Function unknown]
Probab=25.59 E-value=1.5e+02 Score=30.27 Aligned_cols=70 Identities=26% Similarity=0.332 Sum_probs=46.8
Q ss_pred cccchhhhhHHHHHHHHHHHHHhhccccceeeecchhHHHHhHHHHhhHhhhhhhhHHHHHHHHHHHHHH
Q 010378 352 QDVPILVIVSMLAYFCFLEELLVGKMKSGAIAISLPFSCILGLLASTTATTMVRKSFIWLYAFIQFGLVV 421 (512)
Q Consensus 352 q~vpvLViIsmLayFcfLEqLlv~~~g~~AiaislPfs~iLGll~s~~a~~mv~~~yiW~yA~~qf~~vv 421 (512)
+.-|+-+|+.+.+-|++|-.||.+.+-==++-+-+|=-.++|+..|+.+--|.+--|.-++-+.|-|+--
T Consensus 26 A~dPvRIIiliagaFFWLvSLLisSl~W~~l~i~l~~~lifg~~vsV~~qE~fR~ayyklLkka~~GL~s 95 (252)
T KOG3972|consen 26 AHDPVRIIILIAGAFFWLVSLLISSLVWFGLSIVLPDDLIFGATVSVIAQELFRFAYYKLLKKAQEGLNS 95 (252)
T ss_pred cCCCeeehhhHHHHHHHHHHHHHHHHHHHheEccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 3456667777788888888888876433233245666677888888777666666666666667766543
No 110
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=24.89 E-value=50 Score=35.17 Aligned_cols=37 Identities=24% Similarity=0.580 Sum_probs=27.6
Q ss_pred cccCCccccccHHHHHHHHHHc-----------CCccccccccceeeccee
Q 010378 287 CGCKGELAFAHRECAVKWFSIK-----------GNKTCEVCKQEVENLPVT 326 (512)
Q Consensus 287 C~CKGsLk~VH~~CL~kW~~~k-----------g~~~CEICk~~y~nlpv~ 326 (512)
|-|+- .--++||.+||.-+ |+.+|+.|+..|-..-+.
T Consensus 323 c~crp---~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci~dv~ 370 (381)
T KOG3899|consen 323 CICRP---LWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCIRDVH 370 (381)
T ss_pred ccccc---HHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEEeeee
Confidence 44542 45679999999754 568999999999876543
No 111
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=24.49 E-value=2.5e+02 Score=27.34 Aligned_cols=19 Identities=16% Similarity=0.057 Sum_probs=9.5
Q ss_pred chhHHHHhHHHHhhHhhhh
Q 010378 386 LPFSCILGLLASTTATTMV 404 (512)
Q Consensus 386 lPfs~iLGll~s~~a~~mv 404 (512)
+.++++.|++..+..-.|.
T Consensus 117 i~~~i~~G~~~~~~~~~i~ 135 (206)
T PF06570_consen 117 ILVSIVGGLVFYFIFKYIY 135 (206)
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 4456666665554433333
No 112
>PF04995 CcmD: Heme exporter protein D (CcmD); InterPro: IPR007078 The CcmD protein is part of a C-type cytochrome biogenesis operon []. The exact function of this protein is uncertain. It has been proposed that CcmC, CcmD and CcmE interact directly with each other, establishing a cytoplasm to periplasm haem delivery pathway for cytochrome c maturation []. This protein is found fused to CcmE in P52224 from SWISSPROT. These proteins contain a predicted transmembrane helix.; GO: 0006810 transport, 0016021 integral to membrane
Probab=24.41 E-value=72 Score=24.37 Aligned_cols=21 Identities=29% Similarity=0.725 Sum_probs=11.0
Q ss_pred hHHHH-HHHHHHHHHHHhHhHhhhh
Q 010378 407 SFIWL-YAFIQFGLVVLSAHLFYSL 430 (512)
Q Consensus 407 ~yiW~-yA~~qf~~vvl~~hifY~~ 430 (512)
-|||. |+ +.+++|..-++..+
T Consensus 5 ~yVW~sYg---~t~~~l~~l~~~~~ 26 (46)
T PF04995_consen 5 FYVWSSYG---VTALVLAGLIVWSL 26 (46)
T ss_pred HHHHHHHH---HHHHHHHHHHHHHH
Confidence 47777 65 44444444444433
No 113
>PF11395 DUF2873: Protein of unknown function (DUF2873); InterPro: IPR021532 This entry is represented by the human SARS coronavirus, Orf7b; it is a family of uncharacterised viral proteins.
Probab=21.94 E-value=59 Score=24.92 Aligned_cols=13 Identities=31% Similarity=0.664 Sum_probs=8.9
Q ss_pred hhhhHHHHHHHHH
Q 010378 357 LVIVSMLAYFCFL 369 (512)
Q Consensus 357 LViIsmLayFcfL 369 (512)
++++.||+.|||.
T Consensus 19 flv~imliif~f~ 31 (43)
T PF11395_consen 19 FLVIIMLIIFWFS 31 (43)
T ss_pred HHHHHHHHHHHHH
Confidence 3344599999984
No 114
>KOG1074 consensus Transcriptional repressor SALM [Transcription]
Probab=21.57 E-value=6.7e+02 Score=30.55 Aligned_cols=14 Identities=21% Similarity=0.686 Sum_probs=11.7
Q ss_pred cccc---ccccceeecc
Q 010378 311 KTCE---VCKQEVENLP 324 (512)
Q Consensus 311 ~~CE---ICk~~y~nlp 324 (512)
..|+ ||.++|.|--
T Consensus 666 ~ScP~~~ic~~kftn~V 682 (958)
T KOG1074|consen 666 FSCPSTFICQKKFTNAV 682 (958)
T ss_pred ccCCchhhhcccccccc
Confidence 6899 9999998753
No 115
>PRK10263 DNA translocase FtsK; Provisional
Probab=21.20 E-value=1.2e+02 Score=38.00 Aligned_cols=40 Identities=20% Similarity=0.159 Sum_probs=20.3
Q ss_pred HHhHhHhhhhccchhhhHhhhhhhccceeeeehhHHHHHHH
Q 010378 421 VLSAHLFYSLLHMQAVIVVLLSTFAGFGITMAGTSILTDAL 461 (512)
Q Consensus 421 vl~~hifY~~~~~~~v~ai~la~~~Gfgi~m~~~s~~~~~~ 461 (512)
.++.++++.++|.-..+.|++. +.-+|+.+.++.-++.++
T Consensus 148 ~lLs~lL~~LfG~vGa~LILLl-llLIGLiLlTglSwlsIl 187 (1355)
T PRK10263 148 SLLSTTLQPLLHSSGGTIALLC-VWAAGLTLFTGWSWVTIA 187 (1355)
T ss_pred HHHHHHHHHHHhHHHHHHHHHH-HHHHHHHHHHhhHHHHHH
Confidence 4556778888886444333332 334444444443344433
No 116
>PF02592 DUF165: Uncharacterized ACR, YhhQ family COG1738; InterPro: IPR003744 This is a family of uncharacterised proteins. Conserved regions of hydrophobicity suggest that all members of the family may be integral membrane proteins.
Probab=20.59 E-value=3.4e+02 Score=24.98 Aligned_cols=29 Identities=17% Similarity=0.234 Sum_probs=25.1
Q ss_pred hhHhhhhhhccceeeeehhHHHHHHHHHH
Q 010378 436 VIVVLLSTFAGFGITMAGTSILTDALRRR 464 (512)
Q Consensus 436 v~ai~la~~~Gfgi~m~~~s~~~~~~~rr 464 (512)
...+.+|...+|.++...|..+..++|++
T Consensus 67 ~~ri~~aS~~a~lisq~~d~~if~~lk~~ 95 (145)
T PF02592_consen 67 TPRIALASLIAFLISQLLDVYIFSKLKRK 95 (145)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 55677899999999999999999999954
No 117
>PRK05978 hypothetical protein; Provisional
Probab=20.34 E-value=3.3e+02 Score=26.14 Aligned_cols=14 Identities=14% Similarity=0.565 Sum_probs=11.9
Q ss_pred Cccccccccceeec
Q 010378 310 NKTCEVCKQEVENL 323 (512)
Q Consensus 310 ~~~CEICk~~y~nl 323 (512)
+..|+.|+.+|...
T Consensus 52 ~~~C~~CG~~~~~~ 65 (148)
T PRK05978 52 VDHCAACGEDFTHH 65 (148)
T ss_pred CCCccccCCccccC
Confidence 57899999999864
No 118
>TIGR00927 2A1904 K+-dependent Na+/Ca+ exchanger.
Probab=20.03 E-value=2e+02 Score=35.34 Aligned_cols=18 Identities=22% Similarity=0.178 Sum_probs=8.6
Q ss_pred ccccceeeecchhHHHHh
Q 010378 376 KMKSGAIAISLPFSCILG 393 (512)
Q Consensus 376 ~~g~~AiaislPfs~iLG 393 (512)
+|..++++=|--|++++|
T Consensus 997 dMAVan~iGSNIFnIllg 1014 (1096)
T TIGR00927 997 DMAVSSSVGSNIFDITVG 1014 (1096)
T ss_pred cceeeeccccchheeeee
Confidence 444444444444555533
Done!