Query 010378
Match_columns 512
No_of_seqs 244 out of 780
Neff 3.9
Searched_HMMs 29240
Date Mon Mar 25 05:31:00 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010378.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010378hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1vyx_A ORF K3, K3RING; zinc-bi 99.7 3.4E-17 1.2E-21 128.6 4.0 55 265-322 5-59 (60)
2 2d8s_A Cellular modulator of i 99.6 1.7E-15 5.9E-20 124.9 5.5 59 264-323 13-71 (80)
3 2kiz_A E3 ubiquitin-protein li 98.3 5.3E-07 1.8E-11 69.8 5.0 51 265-322 13-63 (69)
4 2ep4_A Ring finger protein 24; 98.2 1.4E-06 4.6E-11 68.4 5.9 52 265-323 14-65 (74)
5 2ect_A Ring finger protein 126 98.2 9.3E-07 3.2E-11 70.0 3.4 52 265-323 14-65 (78)
6 1x4j_A Ring finger protein 38; 98.1 1.3E-06 4.6E-11 68.9 3.8 50 265-321 22-71 (75)
7 2l0b_A E3 ubiquitin-protein li 98.1 2E-06 6.9E-11 70.9 3.6 50 265-321 39-88 (91)
8 1iym_A EL5; ring-H2 finger, ub 98.0 1.3E-06 4.6E-11 64.6 1.9 50 265-321 4-54 (55)
9 2ct2_A Tripartite motif protei 97.9 1.4E-05 4.6E-10 64.0 5.8 54 264-322 13-68 (88)
10 1v87_A Deltex protein 2; ring- 97.9 7.4E-06 2.5E-10 69.2 4.1 53 266-323 25-95 (114)
11 2ecm_A Ring finger and CHY zin 97.9 6.6E-06 2.3E-10 60.7 3.2 50 265-321 4-54 (55)
12 2ecl_A Ring-box protein 2; RNF 97.8 1E-05 3.5E-10 65.5 3.3 51 266-323 15-77 (81)
13 2ea6_A Ring finger protein 4; 97.8 1.4E-05 4.9E-10 61.0 3.8 50 265-321 14-67 (69)
14 2csy_A Zinc finger protein 183 97.7 4E-05 1.4E-09 61.2 5.9 48 264-321 13-60 (81)
15 2yur_A Retinoblastoma-binding 97.7 2.6E-05 8.9E-10 61.7 4.3 49 265-321 14-63 (74)
16 2d8t_A Dactylidin, ring finger 97.6 3.2E-05 1.1E-09 60.4 3.4 48 265-322 14-61 (71)
17 3ng2_A RNF4, snurf, ring finge 97.6 2.4E-05 8.1E-10 60.3 2.4 52 264-322 8-63 (71)
18 2ysl_A Tripartite motif-contai 97.6 5.1E-05 1.7E-09 58.9 4.3 51 264-322 18-69 (73)
19 1chc_A Equine herpes virus-1 r 97.6 4.5E-05 1.5E-09 58.6 3.4 50 264-322 3-52 (68)
20 2ecn_A Ring finger protein 141 97.5 3.1E-05 1.1E-09 59.9 1.8 47 265-322 14-60 (70)
21 2ecy_A TNF receptor-associated 97.5 7.9E-05 2.7E-09 57.3 3.8 50 264-322 13-62 (66)
22 2ecw_A Tripartite motif-contai 97.5 0.00017 5.9E-09 56.8 5.8 50 265-322 18-71 (85)
23 3ztg_A E3 ubiquitin-protein li 97.5 0.00011 3.8E-09 59.7 4.9 50 264-321 11-61 (92)
24 2xeu_A Ring finger protein 4; 97.5 4.9E-05 1.7E-09 57.1 2.5 52 265-323 2-57 (64)
25 3dpl_R Ring-box protein 1; ubi 97.4 8.3E-05 2.9E-09 64.1 3.9 49 267-322 38-101 (106)
26 2ecv_A Tripartite motif-contai 97.4 0.00018 6.2E-09 56.6 5.3 50 265-322 18-71 (85)
27 2ysj_A Tripartite motif-contai 97.4 0.00024 8.2E-09 54.0 5.4 45 264-316 18-63 (63)
28 2ecj_A Tripartite motif-contai 97.4 0.00014 4.9E-09 53.8 4.1 44 265-316 14-58 (58)
29 2djb_A Polycomb group ring fin 97.3 0.00018 6.2E-09 56.3 4.4 48 265-322 14-62 (72)
30 1t1h_A Gspef-atpub14, armadill 97.3 0.00016 5.6E-09 57.0 3.9 50 264-322 6-55 (78)
31 2ct0_A Non-SMC element 1 homol 97.1 0.00031 1.1E-08 57.4 3.5 51 264-322 13-64 (74)
32 4a0k_B E3 ubiquitin-protein li 97.0 0.00011 3.8E-09 64.7 0.3 49 267-322 49-112 (117)
33 2egp_A Tripartite motif-contai 97.0 0.00016 5.4E-09 56.8 0.8 50 265-322 11-65 (79)
34 3lrq_A E3 ubiquitin-protein li 96.8 0.00044 1.5E-08 57.8 2.3 49 265-322 21-70 (100)
35 1g25_A CDK-activating kinase a 96.8 0.00088 3E-08 51.2 3.4 52 265-322 2-55 (65)
36 4ayc_A E3 ubiquitin-protein li 96.7 0.00037 1.3E-08 61.3 0.9 47 266-322 53-99 (138)
37 4ap4_A E3 ubiquitin ligase RNF 96.7 0.0006 2.1E-08 57.7 2.1 55 265-326 6-64 (133)
38 3k1l_B Fancl; UBC, ring, RWD, 96.6 0.00091 3.1E-08 69.3 3.5 55 265-322 307-373 (381)
39 2ckl_B Ubiquitin ligase protei 96.6 0.0011 3.9E-08 59.5 3.4 49 265-322 53-102 (165)
40 3fl2_A E3 ubiquitin-protein li 96.6 0.0012 3.9E-08 56.8 3.3 49 265-322 51-99 (124)
41 2y43_A E3 ubiquitin-protein li 96.5 0.00083 2.8E-08 55.4 1.9 48 265-322 21-69 (99)
42 1jm7_A BRCA1, breast cancer ty 96.5 0.0012 4E-08 55.1 2.5 49 266-322 21-70 (112)
43 1e4u_A Transcriptional repress 96.4 0.0021 7E-08 52.4 3.6 55 265-324 10-64 (78)
44 2ckl_A Polycomb group ring fin 96.4 0.0012 3.9E-08 55.5 2.0 48 265-322 14-62 (108)
45 3hct_A TNF receptor-associated 96.2 0.0035 1.2E-07 53.5 3.9 50 264-322 16-65 (118)
46 2kr4_A Ubiquitin conjugation f 96.1 0.0067 2.3E-07 49.6 5.3 48 265-322 13-60 (85)
47 1z6u_A NP95-like ring finger p 96.1 0.0027 9.2E-08 57.2 3.1 49 265-322 77-125 (150)
48 4ap4_A E3 ubiquitin ligase RNF 96.1 0.0038 1.3E-07 52.7 3.8 53 264-323 70-126 (133)
49 2y1n_A E3 ubiquitin-protein li 95.9 0.0047 1.6E-07 64.3 4.4 49 266-323 332-380 (389)
50 2vje_B MDM4 protein; proto-onc 95.9 0.0035 1.2E-07 48.5 2.3 52 261-322 2-56 (63)
51 3l11_A E3 ubiquitin-protein li 95.8 0.0011 3.7E-08 56.2 -1.0 49 265-322 14-62 (115)
52 1rmd_A RAG1; V(D)J recombinati 95.7 0.0042 1.5E-07 52.5 2.2 49 265-322 22-70 (116)
53 2kre_A Ubiquitin conjugation f 95.4 0.02 6.9E-07 48.4 5.5 49 264-322 27-75 (100)
54 1wgm_A Ubiquitin conjugation f 95.2 0.022 7.4E-07 48.0 5.1 50 264-322 20-69 (98)
55 2ea5_A Cell growth regulator w 95.2 0.02 6.9E-07 45.1 4.5 45 264-322 13-58 (68)
56 4ic3_A E3 ubiquitin-protein li 95.1 0.0039 1.3E-07 49.4 0.2 45 265-323 23-68 (74)
57 2c2l_A CHIP, carboxy terminus 95.0 0.018 6.3E-07 54.2 4.5 49 265-322 207-255 (281)
58 2vje_A E3 ubiquitin-protein li 94.8 0.015 5.1E-07 45.1 2.6 48 265-322 7-57 (64)
59 1jm7_B BARD1, BRCA1-associated 94.4 0.0062 2.1E-07 51.9 -0.4 45 265-321 21-66 (117)
60 3knv_A TNF receptor-associated 93.8 0.013 4.6E-07 52.2 0.6 49 264-321 29-77 (141)
61 2f42_A STIP1 homology and U-bo 93.2 0.052 1.8E-06 50.9 3.6 49 265-322 105-153 (179)
62 1bor_A Transcription factor PM 93.1 0.018 6E-07 43.3 0.2 45 265-322 5-49 (56)
63 3nw0_A Non-structural maintena 93.0 0.041 1.4E-06 53.4 2.5 50 266-323 180-230 (238)
64 3hcs_A TNF receptor-associated 92.8 0.055 1.9E-06 48.6 2.9 50 264-322 16-65 (170)
65 2yu4_A E3 SUMO-protein ligase 92.7 0.094 3.2E-06 43.3 4.0 47 265-319 6-59 (94)
66 2ecg_A Baculoviral IAP repeat- 91.7 0.075 2.6E-06 41.9 2.2 44 265-322 24-68 (75)
67 3t6p_A Baculoviral IAP repeat- 90.7 0.047 1.6E-06 55.7 -0.0 44 265-322 294-338 (345)
68 3htk_C E3 SUMO-protein ligase 90.5 0.15 5.3E-06 50.8 3.5 50 265-322 180-232 (267)
69 1wim_A KIAA0161 protein; ring 90.4 0.14 4.9E-06 41.8 2.7 50 265-320 4-62 (94)
70 2yho_A E3 ubiquitin-protein li 87.3 0.13 4.3E-06 41.6 0.3 45 265-323 17-62 (79)
71 2bay_A PRE-mRNA splicing facto 85.2 0.52 1.8E-05 36.4 2.8 47 267-323 4-51 (61)
72 2lri_C Autoimmune regulator; Z 84.9 0.34 1.2E-05 38.5 1.7 54 260-321 6-61 (66)
73 2l43_A N-teminal domain from h 78.7 0.66 2.2E-05 38.7 1.2 55 264-321 23-77 (88)
74 2ku3_A Bromodomain-containing 71.7 0.8 2.7E-05 36.9 0.0 53 264-319 14-66 (71)
75 1weo_A Cellulose synthase, cat 69.1 4.2 0.00014 34.8 3.8 52 265-322 15-70 (93)
76 1wev_A Riken cDNA 1110020M19; 61.1 0.54 1.9E-05 39.1 -3.1 55 265-322 15-75 (88)
77 1weu_A Inhibitor of growth fam 61.0 4.6 0.00016 34.1 2.6 49 263-319 33-85 (91)
78 1wen_A Inhibitor of growth fam 52.7 3.7 0.00013 32.9 0.6 49 264-320 14-66 (71)
79 2l5u_A Chromodomain-helicase-D 47.0 6.5 0.00022 30.3 1.2 47 265-319 10-58 (61)
80 3u5n_A E3 ubiquitin-protein li 45.8 2.3 8E-05 39.8 -1.8 49 265-321 6-56 (207)
81 2k16_A Transcription initiatio 45.0 3 0.0001 33.0 -1.0 52 265-321 17-70 (75)
82 2yt5_A Metal-response element- 43.6 2.7 9.3E-05 32.4 -1.5 53 264-319 4-61 (66)
83 2e6r_A Jumonji/ARID domain-con 42.9 2.4 8.4E-05 35.4 -2.0 49 265-319 15-66 (92)
84 1f62_A Transcription factor WS 41.1 5.1 0.00017 29.4 -0.3 47 267-318 1-49 (51)
85 2ri7_A Nucleosome-remodeling f 37.1 7.2 0.00025 35.1 0.0 52 264-320 6-60 (174)
86 3o36_A Transcription intermedi 36.6 5 0.00017 36.7 -1.1 48 265-320 3-52 (184)
87 3ql9_A Transcriptional regulat 35.9 25 0.00084 31.5 3.3 46 265-318 56-110 (129)
88 2ysm_A Myeloid/lymphoid or mix 35.2 6.7 0.00023 33.1 -0.5 37 265-306 6-42 (111)
89 2vnf_A ING 4, P29ING4, inhibit 34.1 5.2 0.00018 30.9 -1.2 47 264-318 8-58 (60)
90 1xwh_A Autoimmune regulator; P 33.2 5.2 0.00018 31.2 -1.3 49 263-319 5-55 (66)
91 1mm2_A MI2-beta; PHD, zinc fin 33.2 4.5 0.00016 31.2 -1.7 47 265-319 8-56 (61)
92 1fp0_A KAP-1 corepressor; PHD 33.1 11 0.00037 31.8 0.5 47 265-319 24-72 (88)
93 1wep_A PHF8; structural genomi 32.4 33 0.0011 27.4 3.2 52 265-321 11-65 (79)
94 2kwj_A Zinc finger protein DPF 31.2 13 0.00044 31.9 0.6 50 267-319 2-67 (114)
95 4gne_A Histone-lysine N-methyl 31.1 13 0.00043 32.2 0.6 45 264-316 13-59 (107)
96 1wem_A Death associated transc 30.5 55 0.0019 25.8 4.2 51 264-320 14-71 (76)
97 2jmi_A Protein YNG1, ING1 homo 27.4 6.9 0.00024 33.0 -1.7 47 264-318 24-75 (90)
98 3vk6_A E3 ubiquitin-protein li 27.2 43 0.0015 29.0 3.2 36 283-324 16-51 (101)
99 2lbm_A Transcriptional regulat 27.0 31 0.0011 31.2 2.4 46 265-318 62-116 (142)
100 2kdr_X NS4B, P27, non-structur 25.8 57 0.0019 22.4 2.9 22 390-411 6-27 (28)
101 3v43_A Histone acetyltransfera 24.1 37 0.0012 28.8 2.2 35 266-303 5-43 (112)
102 2ko5_A Ring finger protein Z; 23.0 26 0.0009 30.3 1.1 46 266-322 28-73 (99)
103 3kv5_D JMJC domain-containing 20.3 17 0.00058 38.7 -0.8 52 265-321 36-90 (488)
No 1
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=99.66 E-value=3.4e-17 Score=128.60 Aligned_cols=55 Identities=36% Similarity=0.797 Sum_probs=49.5
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..||||+++. ++.+++||+|+|+++|||+.||.+|+..+++.+||+|+++|..
T Consensus 5 ~~~~CrIC~~~~---~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~~ 59 (60)
T 1vyx_A 5 DVPVCWICNEEL---GNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYNT 59 (60)
T ss_dssp SCCEETTTTEEC---SCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCCC
T ss_pred CCCEeEEeecCC---CCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeeec
Confidence 568999999763 3457899999999999999999999999999999999999974
No 2
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.57 E-value=1.7e-15 Score=124.95 Aligned_cols=59 Identities=32% Similarity=0.742 Sum_probs=51.8
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
+++..|+||+++.. .++.+++||+|+|+++++|+.||.+|+..+++.+||+|++.|...
T Consensus 13 ~~~~~C~IC~~~~~-~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGD-DESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCC-SSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCcccc-CCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 35678999998764 456789999999999999999999999999889999999999753
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=98.32 E-value=5.3e-07 Score=69.83 Aligned_cols=51 Identities=31% Similarity=0.782 Sum_probs=41.4
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++...+......+||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 13 ~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (69)
T 2kiz_A 13 TEEKCTICLSILEEGEDVRRLPCM-----HLFHQVCVDQWLITN--KKCPICRVDIEA 63 (69)
T ss_dssp CCCSBTTTTBCCCSSSCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCSBSCS
T ss_pred CCCCCeeCCccccCCCcEEEeCCC-----CHHHHHHHHHHHHcC--CCCcCcCccccC
Confidence 567899999877544556778986 789999999999874 469999998764
No 4
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.24 E-value=1.4e-06 Score=68.39 Aligned_cols=52 Identities=25% Similarity=0.662 Sum_probs=41.1
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
++..|.||++...+......+||. +.+|..|+.+|+..+ ..|++|+..+..+
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-----H~f~~~Ci~~~~~~~--~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 14 LHELCAVCLEDFKPRDELGICPCK-----HAFHRKCLIKWLEVR--KVCPLCNMPVLQL 65 (74)
T ss_dssp CSCBCSSSCCBCCSSSCEEEETTT-----EEEEHHHHHHHHHHC--SBCTTTCCBCSSC
T ss_pred CCCCCcCCCcccCCCCcEEEcCCC-----CEecHHHHHHHHHcC--CcCCCcCcccccc
Confidence 456899999887544445567886 789999999999875 4899999987653
No 5
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.16 E-value=9.3e-07 Score=70.00 Aligned_cols=52 Identities=21% Similarity=0.638 Sum_probs=41.3
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
++..|.||++...+......+||. +.+|..|+.+|+.. ...|++|+.++...
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~C~-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 65 (78)
T 2ect_A 14 SGLECPVCKEDYALGESVRQLPCN-----HLFHDSCIVPWLEQ--HDSCPVCRKSLTGQ 65 (78)
T ss_dssp SSCCCTTTTSCCCTTSCEEECTTS-----CEEETTTTHHHHTT--TCSCTTTCCCCCCS
T ss_pred CCCCCeeCCccccCCCCEEEeCCC-----CeecHHHHHHHHHc--CCcCcCcCCccCCc
Confidence 567999999877544445667887 78999999999965 36899999997753
No 6
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.14 E-value=1.3e-06 Score=68.86 Aligned_cols=50 Identities=22% Similarity=0.666 Sum_probs=40.4
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
++..|.||++...+......+||. +.+|..|+.+|+..+ ..|++|+..+.
T Consensus 22 ~~~~C~IC~~~~~~~~~~~~l~C~-----H~fh~~Ci~~w~~~~--~~CP~Cr~~~~ 71 (75)
T 1x4j_A 22 EQTLCVVCMCDFESRQLLRVLPCN-----HEFHAKCVDKWLKAN--RTCPICRADSG 71 (75)
T ss_dssp SCCEETTTTEECCBTCEEEEETTT-----EEEETTHHHHHHHHC--SSCTTTCCCCC
T ss_pred CCCCCeECCcccCCCCeEEEECCC-----CHhHHHHHHHHHHcC--CcCcCcCCcCC
Confidence 567999999887544445678886 789999999999764 58999998865
No 7
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=98.06 E-value=2e-06 Score=70.91 Aligned_cols=50 Identities=30% Similarity=0.684 Sum_probs=40.5
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
++..|.||+++..+++....+||. +.+|..|+.+|+.. +..|++|+..+.
T Consensus 39 ~~~~C~IC~~~~~~~~~~~~l~C~-----H~Fh~~Ci~~wl~~--~~~CP~Cr~~~~ 88 (91)
T 2l0b_A 39 QEMCCPICCSEYVKGDVATELPCH-----HYFHKPCVSIWLQK--SGTCPVCRCMFP 88 (91)
T ss_dssp SCSEETTTTEECCTTCEEEEETTT-----EEEEHHHHHHHHTT--TCBCTTTCCBSS
T ss_pred CCCCCcccChhhcCCCcEEecCCC-----ChHHHHHHHHHHHc--CCcCcCcCccCC
Confidence 567999999877544456678987 78999999999965 458999998865
No 8
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=98.04 E-value=1.3e-06 Score=64.56 Aligned_cols=50 Identities=32% Similarity=0.749 Sum_probs=39.8
Q ss_pred CCCeeeEcccccCCCCCceeec-cccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKME-CGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~P-C~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
++..|.||++...+++.....| |. +.+|..|+.+|+.. +..|++|+.++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~-----H~f~~~Ci~~w~~~--~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCG-----HGFHAECVDMWLGS--HSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSC-----CEECTTHHHHTTTT--CCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCC-----CcccHHHHHHHHHc--CCcCcCCCCEeE
Confidence 4578999998876555566677 76 78999999999965 568999998764
No 9
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.91 E-value=1.4e-05 Score=64.03 Aligned_cols=54 Identities=22% Similarity=0.435 Sum_probs=42.8
Q ss_pred CCCCeeeEcccccCCCCC-ceeeccccCCccccccHHHHHHHHHHc-CCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIK-GNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~-~Li~PC~CKGsLk~VH~~CL~kW~~~k-g~~~CEICk~~y~n 322 (512)
++...|.||++...+.+. +..+||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 68 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCG-----HTICRQCLEKLLASSINGVRCPFCSKITRI 68 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSS-----CEEEHHHHHHHHHHCSSCBCCTTTCCCBCC
T ss_pred cCCCCCccCCccccccCCCeEECCCC-----ChhhHHHHHHHHHcCCCCcCCCCCCCcccc
Confidence 356789999987643332 6778886 889999999999875 46899999998764
No 10
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=97.89 E-value=7.4e-06 Score=69.16 Aligned_cols=53 Identities=23% Similarity=0.410 Sum_probs=40.1
Q ss_pred CCeeeEcccccCCCC---------------CceeeccccCCccccccHHHHHHHHHH---cCCccccccccceeec
Q 010378 266 EAVCRICFIELGEGF---------------DALKMECGCKGELAFAHRECAVKWFSI---KGNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e~~---------------~~Li~PC~CKGsLk~VH~~CL~kW~~~---kg~~~CEICk~~y~nl 323 (512)
+..|-||++...+.. ....+||. +.+|..||.+|+.. +....|++|+..|...
T Consensus 25 ~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~-----H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 25 EEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCS-----HAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp SCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSC-----CEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCcCccCChhhcCcccccccccccccCcccceecCCCC-----CcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 358999998764321 11267887 89999999999975 4568999999998753
No 11
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=97.89 E-value=6.6e-06 Score=60.66 Aligned_cols=50 Identities=22% Similarity=0.510 Sum_probs=39.9
Q ss_pred CCCeeeEcccccCCCC-CceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGF-DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~-~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
++..|.||++...+.+ .....||. +.+|..|+.+|+..+ ..|++|+..+.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCG-----HLLHRTCYEEMLKEG--YRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTS-----CEEETTHHHHHHHHT--CCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCC-----CcccHHHHHHHHHcC--CcCCCCCCcCC
Confidence 4578999998764333 36678886 789999999999876 78999998764
No 12
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.80 E-value=1e-05 Score=65.53 Aligned_cols=51 Identities=20% Similarity=0.455 Sum_probs=36.8
Q ss_pred CCeeeEcccccCC-----------CCCceeec-cccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 266 EAVCRICFIELGE-----------GFDALKME-CGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e-----------~~~~Li~P-C~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
+..|-||+++..+ ++....+| |. +.+|..|+.+|+..+ .+|++|+.++...
T Consensus 15 ~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~~--~~CP~CR~~~~~~ 77 (81)
T 2ecl_A 15 CDTCAICRVQVMDACLRCQAENKQEDCVVVWGECN-----HSFHNCCMSLWVKQN--NRCPLCQQDWVVQ 77 (81)
T ss_dssp CSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTS-----CEEEHHHHHHHTTTC--CBCTTTCCBCCEE
T ss_pred CCCCcccChhhhccCcccccccCCCceEEEeCCCC-----CccChHHHHHHHHhC--CCCCCcCCCcchh
Confidence 3457777766532 22244555 76 889999999999765 5999999997743
No 13
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.79 E-value=1.4e-05 Score=60.97 Aligned_cols=50 Identities=22% Similarity=0.472 Sum_probs=39.1
Q ss_pred CCCeeeEcccccCCC---C-CceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEG---F-DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~---~-~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
+...|-||++...+. + .....+|. +.+|..|+.+|+.. +..|++|+..+.
T Consensus 14 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~ 67 (69)
T 2ea6_A 14 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKIN 67 (69)
T ss_dssp CCCCCTTTCCCHHHHTTTTCCEEECSSS-----CEEEHHHHHHHHHH--CSSCTTTCCCCC
T ss_pred CCCCCcccCccccccccccCCeEeCCCC-----ChhcHHHHHHHHHc--CCCCCCCCCccC
Confidence 567899999776432 1 12678887 78999999999987 568999999875
No 14
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.74 E-value=4e-05 Score=61.18 Aligned_cols=48 Identities=23% Similarity=0.531 Sum_probs=39.5
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
++...|.||+... .++.++||. +.+|+.|+.+|+.. ...|++|+..+.
T Consensus 13 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAF---QNPVVTKCR-----HYFCESCALEHFRA--TPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBC---CSEEECTTS-----CEEEHHHHHHHHHH--CSBCSSSCCBCC
T ss_pred CCCCCCcCCCchh---cCeeEccCC-----CHhHHHHHHHHHHC--CCcCCCcCcccc
Confidence 3567999998765 346788987 78899999999975 568999999986
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=97.71 E-value=2.6e-05 Score=61.65 Aligned_cols=49 Identities=29% Similarity=0.511 Sum_probs=40.8
Q ss_pred CCCeeeEcccccCCCCCceeec-cccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKME-CGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~P-C~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
++..|.||++.. .++...| |. +.+|+.|+.+|+..++...|++|+.++.
T Consensus 14 ~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 63 (74)
T 2yur_A 14 DELLCLICKDIM---TDAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 63 (74)
T ss_dssp GGGSCSSSCCCC---TTCEECSSSC-----CEECTTHHHHHHHHSSSSCCSSSCCSSC
T ss_pred CCCCCcCCChHH---hCCeEcCCCC-----CHHHHHHHHHHHHhcCCCcCCCCCCcCC
Confidence 567999998665 3467788 87 7899999999999887789999999754
No 16
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.61 E-value=3.2e-05 Score=60.42 Aligned_cols=48 Identities=21% Similarity=0.490 Sum_probs=39.2
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++.. .++...||. +.+|+.|+.+|+.. ...|++|+..+..
T Consensus 14 ~~~~C~IC~~~~---~~~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 14 TVPECAICLQTC---VHPVSLPCK-----HVFCYLCVKGASWL--GKRCALCRQEIPE 61 (71)
T ss_dssp SCCBCSSSSSBC---SSEEEETTT-----EEEEHHHHHHCTTC--SSBCSSSCCBCCH
T ss_pred CCCCCccCCccc---CCCEEccCC-----CHHHHHHHHHHHHC--CCcCcCcCchhCH
Confidence 457899999764 346778887 78999999999965 3799999999874
No 17
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=97.60 E-value=2.4e-05 Score=60.35 Aligned_cols=52 Identities=21% Similarity=0.475 Sum_probs=40.4
Q ss_pred CCCCeeeEcccccCCC----CCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEG----FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~----~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+++..|-||++...+. ......+|. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 63 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINH 63 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTS-----CEEEHHHHHHHHHHC--SBCTTTCCBCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCC-----ChHhHHHHHHHHHcC--CCCCCCCCccCh
Confidence 3567899999775431 223678887 789999999999765 599999998774
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.59 E-value=5.1e-05 Score=58.92 Aligned_cols=51 Identities=27% Similarity=0.581 Sum_probs=40.6
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH-cCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI-KGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~-kg~~~CEICk~~y~n 322 (512)
+++..|.||++... ++...||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 18 ~~~~~C~IC~~~~~---~~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 69 (73)
T 2ysl_A 18 QEEVICPICLDILQ---KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLCKTSVRK 69 (73)
T ss_dssp CCCCBCTTTCSBCS---SEEECTTC-----CEEEHHHHHHHCSSSCSCCCCSSSCCCCCC
T ss_pred ccCCEeccCCcccC---CeEEcCCC-----ChhhHHHHHHHHHcCCCCCCCCCCCCcCCc
Confidence 35679999997653 46677886 78999999999974 456799999998763
No 19
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=97.55 E-value=4.5e-05 Score=58.57 Aligned_cols=50 Identities=24% Similarity=0.543 Sum_probs=39.6
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+++..|.||++... +.....||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 3 ~~~~~C~IC~~~~~--~~~~~~~C~-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPS--NYSMALPCL-----HAFCYVCITRWIRQN--PTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCC--SCEEETTTT-----EEESTTHHHHHHHHS--CSTTTTCCCCCC
T ss_pred CCCCCCeeCCcccc--CCcEecCCC-----CeeHHHHHHHHHhCc--CcCcCCChhhHh
Confidence 35678999997753 224678887 789999999999764 689999999874
No 20
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.49 E-value=3.1e-05 Score=59.94 Aligned_cols=47 Identities=26% Similarity=0.692 Sum_probs=38.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+...|.||++... + ..+||. +.+|..|+.+|+. ....|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~---~-~~~~Cg-----H~fc~~Ci~~~~~--~~~~CP~Cr~~~~~ 60 (70)
T 2ecn_A 14 DEEECCICMDGRA---D-LILPCA-----HSFCQKCIDKWSD--RHRNCPICRLQMTG 60 (70)
T ss_dssp CCCCCSSSCCSCC---S-EEETTT-----EEECHHHHHHSSC--CCSSCHHHHHCTTC
T ss_pred CCCCCeeCCcCcc---C-cccCCC-----CcccHHHHHHHHH--CcCcCCCcCCcccC
Confidence 4678999997753 2 778987 7899999999997 57899999988764
No 21
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.47 E-value=7.9e-05 Score=57.28 Aligned_cols=50 Identities=22% Similarity=0.569 Sum_probs=39.5
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+++..|.||++... ++...+|. +.+|+.|+.+|+. ++...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 62 (66)
T 2ecy_A 13 EDKYKCEKCHLVLC---SPKQTECG-----HRFCESCMAALLS-SSSPKCTACQESIVK 62 (66)
T ss_dssp CCCEECTTTCCEES---SCCCCSSS-----CCCCHHHHHHHHT-TSSCCCTTTCCCCCT
T ss_pred CcCCCCCCCChHhc---CeeECCCC-----CHHHHHHHHHHHH-hCcCCCCCCCcCCCh
Confidence 35689999987653 45567887 7799999999996 456789999998763
No 22
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=97.46 E-value=0.00017 Score=56.76 Aligned_cols=50 Identities=26% Similarity=0.567 Sum_probs=40.6
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc----CCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK----GNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k----g~~~CEICk~~y~n 322 (512)
++..|.||++.. .++...||. +.+|..|+.+|+... +...|++|+..+..
T Consensus 18 ~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 18 EEVTCPICLELL---KEPVSADCN-----HSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp TTTSCTTTCSCC---SSCEECTTS-----CCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred cCCCCcCCChhh---CcceeCCCC-----CHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 457899998765 345678887 789999999999884 47899999998763
No 23
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=97.46 E-value=0.00011 Score=59.66 Aligned_cols=50 Identities=28% Similarity=0.497 Sum_probs=41.8
Q ss_pred CCCCeeeEcccccCCCCCceeec-cccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 264 EEEAVCRICFIELGEGFDALKME-CGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~P-C~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
+++..|-||++.. .++...| |. +.+++.|+.+|+..++...|++|+..+.
T Consensus 11 ~~~~~C~IC~~~~---~~p~~~~~Cg-----H~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIM---TDAVVIPCCG-----NSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEEC---SSCEECTTTC-----CEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhh---cCceECCCCC-----CHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 3568999999665 3577888 76 7789999999999888899999999874
No 24
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=97.46 E-value=4.9e-05 Score=57.13 Aligned_cols=52 Identities=21% Similarity=0.454 Sum_probs=40.0
Q ss_pred CCCeeeEcccccCCC----CCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELGEG----FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~----~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
++..|.||++...+. ......+|. +.+|..|+.+|+.. +..|++|+..+...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKN--ANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCC-----CchhHHHHHHHHHc--CCCCCCCCccCCcc
Confidence 356899999776431 223678887 78999999999987 56999999987743
No 25
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=97.43 E-value=8.3e-05 Score=64.05 Aligned_cols=49 Identities=20% Similarity=0.375 Sum_probs=36.9
Q ss_pred CeeeEcccccCCC--------------C-CceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 267 AVCRICFIELGEG--------------F-DALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 267 ~vCRICl~e~~e~--------------~-~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
..|-||++...+. + ....++|. +.+|..|+.+|+.. +.+|++|+.+|..
T Consensus 38 d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~-----H~FH~~Ci~~Wl~~--~~~CP~Cr~~~~~ 101 (106)
T 3dpl_R 38 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 101 (106)
T ss_dssp CCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTS-----CEEEHHHHHHHHTT--CSBCSSSCSBCCE
T ss_pred CCCccCChhHhCcCchhhccccccCCccceEeecccC-----cEECHHHHHHHHHc--CCcCcCCCCccee
Confidence 4688887665321 1 13457887 89999999999976 5789999999764
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.41 E-value=0.00018 Score=56.64 Aligned_cols=50 Identities=30% Similarity=0.661 Sum_probs=40.5
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH----cCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI----KGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~----kg~~~CEICk~~y~n 322 (512)
+...|.||++... ++...||. +.+|..|+.+|+.. .+...|++|+..+..
T Consensus 18 ~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 18 EEVTCPICLELLT---QPLSLDCG-----HSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCTTTCSCCS---SCBCCSSS-----CCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred CCCCCCCCCcccC---CceeCCCC-----CHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 4678999997653 45667887 78999999999987 357899999999774
No 27
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00024 Score=53.96 Aligned_cols=45 Identities=27% Similarity=0.620 Sum_probs=35.9
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc-CCcccccc
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK-GNKTCEVC 316 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k-g~~~CEIC 316 (512)
+++..|.||++... ++...||. +.+|+.|+.+|+... +...|++|
T Consensus 18 ~~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQ---KPVTIDCG-----HNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCS---SCEECTTS-----SEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhC---CeEEeCCC-----CcchHHHHHHHHHcCCCCCcCcCC
Confidence 35679999997653 46677887 789999999999854 46789998
No 28
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.37 E-value=0.00014 Score=53.79 Aligned_cols=44 Identities=30% Similarity=0.782 Sum_probs=35.1
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH-cCCcccccc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI-KGNKTCEVC 316 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~-kg~~~CEIC 316 (512)
++..|.||++... ++..++|. +.+|..|+.+|+.. ++...|++|
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 14 VEASCSVCLEYLK---EPVIIECG-----HNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCBCSSSCCBCS---SCCCCSSC-----CCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred cCCCCccCCcccC---ccEeCCCC-----CccCHHHHHHHHHhcCCCCCCCCC
Confidence 5678999997753 35667887 78999999999874 467899998
No 29
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=97.33 E-value=0.00018 Score=56.25 Aligned_cols=48 Identities=29% Similarity=0.488 Sum_probs=38.4
Q ss_pred CCCeeeEcccccCCCCCcee-eccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALK-MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li-~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++... ++.. .+|. +.+|..|+.+|+.. ...|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 62 (72)
T 2djb_A 14 PYILCSICKGYLI---DATTITECL-----HTFCKSCIVRHFYY--SNRCPKCNIVVHQ 62 (72)
T ss_dssp GGGSCTTTSSCCS---SCEECSSSC-----CEECHHHHHHHHHH--CSSCTTTCCCCCS
T ss_pred CCCCCCCCChHHH---CcCEECCCC-----CHHHHHHHHHHHHc--CCcCCCcCcccCc
Confidence 4678999987653 3455 4887 78999999999976 5789999999874
No 30
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=97.30 E-value=0.00016 Score=56.95 Aligned_cols=50 Identities=24% Similarity=0.425 Sum_probs=40.6
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
.++..|.||++.. .++...||. +.+++.|+.+|+. ++...|++|+..+..
T Consensus 6 ~~~~~C~IC~~~~---~~Pv~~~Cg-----H~fc~~Ci~~~~~-~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELM---KDPVIVSTG-----QTYERSSIQKWLD-AGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCC---SSEEEETTT-----EEEEHHHHHHHHT-TTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccc---cCCEEcCCC-----CeecHHHHHHHHH-HCcCCCCCCcCCCCh
Confidence 4578999998664 357788887 7899999999996 357899999998763
No 31
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.09 E-value=0.00031 Score=57.42 Aligned_cols=51 Identities=24% Similarity=0.545 Sum_probs=38.4
Q ss_pred CCCCeeeEcccccCCCCCceeecc-ccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMEC-GCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC-~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+....|-||+.... .+. -| .|. +-+|..|+.+||+.+++.+|++|+..+..
T Consensus 13 ~~i~~C~IC~~~i~-~g~----~C~~C~---h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 13 DAVKICNICHSLLI-QGQ----SCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSCBCSSSCCBCS-SSE----ECSSSC---CEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred CCCCcCcchhhHcc-cCC----ccCCCC---chhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34578999997763 221 23 443 56899999999988877999999988664
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=97.02 E-value=0.00011 Score=64.72 Aligned_cols=49 Identities=20% Similarity=0.426 Sum_probs=0.0
Q ss_pred CeeeEcccccCC-------------CCC--ceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 267 AVCRICFIELGE-------------GFD--ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 267 ~vCRICl~e~~e-------------~~~--~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
..|-||+++..+ .++ .+..+|. +.+|..|+.+|+.. +..|++|+.++..
T Consensus 49 d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~-----H~FH~~CI~~Wl~~--~~~CP~Cr~~~~~ 112 (117)
T 4a0k_B 49 DNCAICRNHIMDLCIECQANQASATSEECTVAWGVCN-----HAFHFHCISRWLKT--RQVCPLDNREWEF 112 (117)
T ss_dssp -----------------------------------------------------------------------
T ss_pred CcCeECChhhcCcChhhhcccccccccccccccCCcC-----ceEcHHHHHHHHHc--CCcCCCCCCeeee
Confidence 479999877642 111 2234676 88999999999977 4689999998764
No 33
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=96.97 E-value=0.00016 Score=56.79 Aligned_cols=50 Identities=30% Similarity=0.599 Sum_probs=40.2
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc-----CCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK-----GNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k-----g~~~CEICk~~y~n 322 (512)
++..|.||++... ++...||. +.+|..|+.+|+... +...|++|+..+..
T Consensus 11 ~~~~C~IC~~~~~---~p~~l~Cg-----H~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 11 EEVTCPICLELLT---EPLSLDCG-----HSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCEETTTTEECS---SCCCCSSS-----CCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred cCCCCcCCCcccC---CeeECCCC-----CHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 5679999997653 35667887 789999999999763 47899999999763
No 34
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=96.82 E-value=0.00044 Score=57.78 Aligned_cols=49 Identities=24% Similarity=0.574 Sum_probs=40.3
Q ss_pred CCCeeeEcccccCCCCCcee-eccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALK-MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li-~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++... ++.. .+|. +.+|+.|+.+|+..++ ..|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~FC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLR---DARLCPHCS-----KLCCFSCIRRWLTEQR-AQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTC-----CEEEHHHHHHHHHHTC-SBCTTTCCBCCG
T ss_pred CCCCCccCCcccc---CccccCCCC-----ChhhHHHHHHHHHHCc-CCCCCCCCcCCH
Confidence 4578999997653 4666 8887 8899999999998764 799999999864
No 35
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.76 E-value=0.00088 Score=51.20 Aligned_cols=52 Identities=17% Similarity=0.364 Sum_probs=38.5
Q ss_pred CCCeeeEccc-ccCCCCC-ceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFI-ELGEGFD-ALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~-e~~e~~~-~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++ ...+... ....+|. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 55 (65)
T 1g25_A 2 DDQGCPRCKTTKYRNPSLKLMVNVCG-----HTLCESCVDLLFVR-GAGNCPECGTPLRK 55 (65)
T ss_dssp CTTCCSTTTTHHHHCSSCCEEECTTC-----CCEEHHHHHHHHHT-TSSSCTTTCCCCSS
T ss_pred CCCcCCcCCCCccCCCccCeecCCCC-----CHhHHHHHHHHHHc-CCCcCCCCCCcccc
Confidence 3568999997 3322221 2467888 78999999999864 56789999999864
No 36
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=96.68 E-value=0.00037 Score=61.28 Aligned_cols=47 Identities=21% Similarity=0.656 Sum_probs=38.2
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+..|.||++.. .++...||. +.+|..|+.+|+.. ...|++|+..+..
T Consensus 53 ~~~C~iC~~~~---~~~~~~~Cg-----H~fc~~Ci~~~~~~--~~~CP~Cr~~~~~ 99 (138)
T 4ayc_A 53 ELQCIICSEYF---IEAVTLNCA-----HSFCSYCINEWMKR--KIECPICRKDIKS 99 (138)
T ss_dssp HSBCTTTCSBC---SSEEEETTS-----CEEEHHHHHHHTTT--CSBCTTTCCBCCC
T ss_pred cCCCcccCccc---CCceECCCC-----CCccHHHHHHHHHc--CCcCCCCCCcCCC
Confidence 45799999765 357788987 78999999999965 5689999998764
No 37
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.68 E-value=0.0006 Score=57.65 Aligned_cols=55 Identities=20% Similarity=0.422 Sum_probs=42.4
Q ss_pred CCCeeeEcccccCCC----CCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeeccee
Q 010378 265 EEAVCRICFIELGEG----FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLPVT 326 (512)
Q Consensus 265 ee~vCRICl~e~~e~----~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlpv~ 326 (512)
++..|-||++...+. .....++|. +.+|..|+.+|+..+ ..|++|+..+......
T Consensus 6 ~~~~C~IC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~~l~ 64 (133)
T 4ap4_A 6 GTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHKRYH 64 (133)
T ss_dssp CSCBCTTTCCBHHHHHHTTCCEEEETTC-----CEEEHHHHHHHHTTC--SBCTTTCCBCTTTCEE
T ss_pred CCCCCcccChhhhCccccccCeEecCCC-----ChhhHHHHHHHHHhC--CCCCCCCCcCcccccc
Confidence 457899999776432 223778998 889999999999754 5999999998865543
No 38
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=96.64 E-value=0.00091 Score=69.27 Aligned_cols=55 Identities=29% Similarity=0.658 Sum_probs=40.2
Q ss_pred CCCeeeEcccccCCCCCceeeccc---cCCccccccHHHHHHHHHHcCC---------ccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECG---CKGELAFAHRECAVKWFSIKGN---------KTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~---CKGsLk~VH~~CL~kW~~~kg~---------~~CEICk~~y~n 322 (512)
+...|-||+....+.+..-...|. |+ +.+|..||.+||...++ ..|+.|++++..
T Consensus 307 ~~~ECaICys~~l~~g~lPdk~C~n~~C~---h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 307 EELRCNICFAYRLDGGEVPLVSCDNAKCV---LKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp SCCSCSSSCCSSCTTCCCCCBCCSCTTCC---CCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred CCccCcccceeecCCCCCccccccCCccC---CccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 567999999876543443344463 54 67999999999987533 589999997663
No 39
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=96.58 E-value=0.0011 Score=59.51 Aligned_cols=49 Identities=27% Similarity=0.628 Sum_probs=38.7
Q ss_pred CCCeeeEcccccCCCCCceee-ccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~-PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++... ++... ||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 53 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLK---NTMTTKECL-----HRFCADCIITALRS-GNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCS---SEEEETTTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhh---CcCEeCCCC-----ChhHHHHHHHHHHh-CcCCCCCCCCcCCC
Confidence 4578999987653 35555 887 88999999999974 46789999998753
No 40
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=96.58 E-value=0.0012 Score=56.78 Aligned_cols=49 Identities=16% Similarity=0.373 Sum_probs=39.5
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++... ++...||. +.+|..|+.+|+. .+...|++|+..+..
T Consensus 51 ~~~~C~IC~~~~~---~p~~~~Cg-----H~fC~~Ci~~~~~-~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVF---RPITTVCQ-----HNVCKDCLDRSFR-AQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCS---SEEECTTS-----CEEEHHHHHHHHH-TTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHc---CcEEeeCC-----CcccHHHHHHHHh-HCcCCCCCCCccCCC
Confidence 4578999997653 56778887 7899999999998 445699999999864
No 41
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=96.52 E-value=0.00083 Score=55.43 Aligned_cols=48 Identities=25% Similarity=0.514 Sum_probs=38.2
Q ss_pred CCCeeeEcccccCCCCCceee-ccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~-PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++... ++... +|. +.+|..|+.+|+.. ...|++|+..+..
T Consensus 21 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~--~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFN---IAMIIPQCS-----HNYCSLCIRKFLSY--KTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCS---SEEECTTTC-----CEEEHHHHHHHHTT--CCBCTTTCCBCCG
T ss_pred CCCCcccCChhhC---CcCEECCCC-----CHhhHHHHHHHHHC--CCCCCCCCCcCCh
Confidence 4578999997653 35555 787 78999999999974 4799999998764
No 42
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=96.46 E-value=0.0012 Score=55.07 Aligned_cols=49 Identities=22% Similarity=0.603 Sum_probs=38.8
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHc-CCccccccccceee
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIK-GNKTCEVCKQEVEN 322 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~k-g~~~CEICk~~y~n 322 (512)
...|.||+... .++...||. +.+|..|+.+|+..+ +...|++|+..+..
T Consensus 21 ~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELI---KEPVSTKCD-----HIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCC---SSCCBCTTS-----CCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhh---cCeEECCCC-----CHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 46899998765 345667887 789999999999864 45789999998663
No 43
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=96.41 E-value=0.0021 Score=52.36 Aligned_cols=55 Identities=22% Similarity=0.379 Sum_probs=42.6
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeecc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlp 324 (512)
++..|-||++... ..+....||.|. +.+++.|+.+|... +...|++|+..|...+
T Consensus 10 ~~~~CpICle~~~-~~d~~~~p~~CG---H~fC~~Cl~~~~~~-~~~~CP~CR~~~~~~~ 64 (78)
T 1e4u_A 10 DPVECPLCMEPLE-IDDINFFPCTCG---YQICRFCWHRIRTD-ENGLCPACRKPYPEDP 64 (78)
T ss_dssp CCCBCTTTCCBCC-TTTTTCCSSTTS---CCCCHHHHHHHTTS-SCSBCTTTCCBCSSCS
T ss_pred cCCcCCccCccCc-cccccccccCCC---CCcCHHHHHHHHhc-CCCCCCCCCCccCCCc
Confidence 4678999998653 345667887773 66899999998753 5789999999998654
No 44
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=96.39 E-value=0.0012 Score=55.49 Aligned_cols=48 Identities=25% Similarity=0.546 Sum_probs=38.7
Q ss_pred CCCeeeEcccccCCCCCceee-ccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~-PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++... ++... ||. +.+|..|+.+|+..+ ..|++|+..+..
T Consensus 14 ~~~~C~IC~~~~~---~p~~~~~Cg-----H~fC~~Ci~~~~~~~--~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 14 PHLMCVLCGGYFI---DATTIIECL-----HSFCKTCIVRYLETS--KYCPICDVQVHK 62 (108)
T ss_dssp GGTBCTTTSSBCS---SEEEETTTC-----CEEEHHHHHHHHTSC--SBCTTTCCBSCS
T ss_pred CcCCCccCChHHh---CcCEeCCCC-----ChhhHHHHHHHHHhC--CcCcCCCccccc
Confidence 4578999987653 46665 887 789999999999753 799999998774
No 45
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=96.16 E-value=0.0035 Score=53.54 Aligned_cols=50 Identities=26% Similarity=0.543 Sum_probs=39.8
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+++..|.||+... .++...+|. +.+++.|+.+|+..++ ..|++|+..+..
T Consensus 16 ~~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMAL---REAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCcCChhh---cCeEECCcC-----ChhhHHHHHHHHhhCC-CCCCCCCCCcCH
Confidence 3567999999664 346777886 7899999999998764 389999998764
No 46
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=96.13 E-value=0.0067 Score=49.56 Aligned_cols=48 Identities=13% Similarity=0.131 Sum_probs=39.2
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|-||++-. .++.+.||. +-+-+.|+.+|+.. +.+|++|+..+..
T Consensus 13 ~~~~CpI~~~~m---~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 13 DEFRDPLMDTLM---TDPVRLPSG-----TVMDRSIILRHLLN--SPTDPFNRQMLTE 60 (85)
T ss_dssp TTTBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHH--CSBCTTTCCBCCG
T ss_pred hheECcccCchh---cCCeECCCC-----CEECHHHHHHHHhc--CCCCCCCcCCCCh
Confidence 678999998654 458889975 56789999999985 5789999998764
No 47
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=96.13 E-value=0.0027 Score=57.18 Aligned_cols=49 Identities=16% Similarity=0.497 Sum_probs=39.7
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+...|.||++.. .++...||. +.+++.|+.+|+.. +...|++|+..+..
T Consensus 77 ~~~~C~IC~~~~---~~pv~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 125 (150)
T 1z6u_A 77 QSFMCVCCQELV---YQPVTTECF-----HNVCKDCLQRSFKA-QVFSCPACRHDLGQ 125 (150)
T ss_dssp HHTBCTTTSSBC---SSEEECTTS-----CEEEHHHHHHHHHT-TCCBCTTTCCBCCT
T ss_pred cCCEeecCChhh---cCCEEcCCC-----CchhHHHHHHHHHh-CCCcCCCCCccCCC
Confidence 457899998664 357778987 78899999999974 45689999999774
No 48
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=96.11 E-value=0.0038 Score=52.70 Aligned_cols=53 Identities=21% Similarity=0.453 Sum_probs=39.7
Q ss_pred CCCCeeeEcccccCCC----CCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 264 EEEAVCRICFIELGEG----FDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 264 eee~vCRICl~e~~e~----~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
++...|-||++...+. ......+|. +.+|..|+.+|+..+ ..|++|+..+..-
T Consensus 70 ~~~~~C~iC~~~~~~~~~~~~~~~~~~Cg-----H~fc~~Ci~~~~~~~--~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 70 SGTVSCPICMDGYSEIVQNGRLIVSTECG-----HVFCSQCLRDSLKNA--NTCPTCRKKINHK 126 (133)
T ss_dssp SSSCBCTTTCCBHHHHHHTTCCEEEETTS-----BEEEHHHHHHHHHHC--SBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCccccccccCcceEeCCCC-----ChhhHHHHHHHHHcC--CCCCCCCCcCChh
Confidence 3457899999765421 123566776 789999999999764 5999999998753
No 49
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=95.94 E-value=0.0047 Score=64.33 Aligned_cols=49 Identities=22% Similarity=0.556 Sum_probs=40.1
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
...|.||++.. .++...||. +.+|..|+.+|+.. +...|++|+..+...
T Consensus 332 ~~~C~ICle~~---~~pv~lpCG-----H~FC~~Ci~~wl~~-~~~~CP~CR~~i~~~ 380 (389)
T 2y1n_A 332 FQLCKICAEND---KDVKIEPCG-----HLMCTSCLTSWQES-EGQGCPFCRCEIKGT 380 (389)
T ss_dssp SSBCTTTSSSB---CCEEEETTC-----CEECHHHHHHHHHH-TCSBCTTTCCBCCEE
T ss_pred CCCCCccCcCC---CCeEEeCCC-----ChhhHHHHHHHHhc-CCCCCCCCCCccCCc
Confidence 46999998664 457889998 67899999999974 467899999998754
No 50
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=95.87 E-value=0.0035 Score=48.53 Aligned_cols=52 Identities=21% Similarity=0.417 Sum_probs=37.8
Q ss_pred CCCCCCCeeeEcccccCCCCCceee--ccccCCcccc-ccHHHHHHHHHHcCCccccccccceee
Q 010378 261 DIPEEEAVCRICFIELGEGFDALKM--ECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 261 di~eee~vCRICl~e~~e~~~~Li~--PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+..+....|.||++.. .+..+. ||. +. +-+.|+.+|... +..|++|+..+..
T Consensus 2 ~~~~~~~~C~IC~~~~---~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 56 (63)
T 2vje_B 2 DCQNLLKPCSLCEKRP---RDGNIIHGRTG-----HLVTCFHCARRLKKA--GASCPICKKEIQL 56 (63)
T ss_dssp -CGGGGSBCTTTSSSB---SCEEEEETTEE-----EEEECHHHHHHHHHT--TCBCTTTCCBCCE
T ss_pred CCCCcCCCCcccCCcC---CCeEEEecCCC-----CHhHHHHHHHHHHHh--CCcCCCcCchhhc
Confidence 3344567999999653 234444 998 55 678999999854 4789999999864
No 51
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=95.79 E-value=0.0011 Score=56.17 Aligned_cols=49 Identities=20% Similarity=0.531 Sum_probs=39.7
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||+... .++...||. +.+|..|+.+|+.. +...|++|+..+..
T Consensus 14 ~~~~C~iC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~-~~~~CP~Cr~~~~~ 62 (115)
T 3l11_A 14 SECQCGICMEIL---VEPVTLPCN-----HTLCKPCFQSTVEK-ASLCCPFCRRRVSS 62 (115)
T ss_dssp HHHBCTTTCSBC---SSCEECTTS-----CEECHHHHCCCCCT-TTSBCTTTCCBCHH
T ss_pred CCCCCccCCccc---CceeEcCCC-----CHHhHHHHHHHHhH-CcCCCCCCCcccCc
Confidence 457899999664 346778887 78999999999954 45899999999874
No 52
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=95.67 E-value=0.0042 Score=52.53 Aligned_cols=49 Identities=20% Similarity=0.493 Sum_probs=39.4
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++.. .++...+|. +.+|..|+.+|+... ...|++|+..+..
T Consensus 22 ~~~~C~IC~~~~---~~p~~~~Cg-----H~fC~~Ci~~~~~~~-~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHIL---ADPVETSCK-----HLFCRICILRCLKVM-GSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHT-CSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHh---cCcEEcCCC-----CcccHHHHHHHHhHC-cCcCCCCCCCCCH
Confidence 457899998765 346778887 789999999999874 4689999998764
No 53
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=95.40 E-value=0.02 Score=48.37 Aligned_cols=49 Identities=12% Similarity=0.144 Sum_probs=39.8
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
.++..|-||++-. .++.+.||. +-+-+.|+.+|+.. +.+|++|+..+..
T Consensus 27 p~~~~CpI~~~~m---~dPV~~~cG-----htf~r~~I~~~l~~--~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLM---TDPVRLPSG-----TIMDRSIILRHLLN--SPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBC---SSEEEETTT-----EEEEHHHHHHHTTS--CSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcc---cCCeECCCC-----CEEchHHHHHHHHc--CCCCCCCCCCCCh
Confidence 4688999998654 468899986 56889999999973 6799999998764
No 54
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=95.24 E-value=0.022 Score=48.01 Aligned_cols=50 Identities=10% Similarity=0.056 Sum_probs=39.1
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
.++..|-||++-. .++.+.||. -+-+-+.|+.+|+.. +.+|++|+..+..
T Consensus 20 p~~~~CpI~~~~m---~dPV~~~cG----~htf~r~cI~~~l~~--~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLM---CDPVVLPSS----RVTVDRSTIARHLLS--DQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBC---SSEEECTTT----CCEEEHHHHHHHTTT--SCBCTTTCSBCCT
T ss_pred cHhcCCcCccccc---cCCeECCCC----CeEECHHHHHHHHHh--CCCCCCCCCCCCh
Confidence 3678999998654 458888876 145779999999975 5689999998764
No 55
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=95.17 E-value=0.02 Score=45.08 Aligned_cols=45 Identities=20% Similarity=0.448 Sum_probs=35.3
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCcccc-ccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+++..|.||++.. .+...+||. +. +-..|+.+ ...|++|+..+..
T Consensus 13 ~~~~~C~IC~~~~---~~~v~~pCg-----H~~~C~~C~~~------~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 13 ENSKDCVVCQNGT---VNWVLLPCR-----HTCLCDGCVKY------FQQCPMCRQFVQE 58 (68)
T ss_dssp CCSSCCSSSSSSC---CCCEETTTT-----BCCSCTTHHHH------CSSCTTTCCCCCC
T ss_pred CCCCCCCCcCcCC---CCEEEECCC-----ChhhhHHHHhc------CCCCCCCCcchhc
Confidence 4567899998653 457889998 55 67799883 4789999999875
No 56
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=95.12 E-value=0.0039 Score=49.43 Aligned_cols=45 Identities=24% Similarity=0.619 Sum_probs=36.9
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
++..|.||++.. .++...||. +. +...|+.+| ..|++|+..+...
T Consensus 23 ~~~~C~iC~~~~---~~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 68 (74)
T 4ic3_A 23 EEKLCKICMDRN---IAIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITFK 68 (74)
T ss_dssp HHTBCTTTSSSB---CCEEEETTC-----CBCCCHHHHTTC------SBCTTTCCBCSEE
T ss_pred cCCCCCCCCCCC---CCEEEcCCC-----ChhHHHHhhhcC------ccCCCcCcCccCc
Confidence 457899999664 457788997 77 899999999 7899999998753
No 57
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=95.00 E-value=0.018 Score=54.22 Aligned_cols=49 Identities=12% Similarity=0.100 Sum_probs=39.0
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
+...|-||++-. .++.+.||. +-+-+.|+.+|+...+. +|++|+..+..
T Consensus 207 ~~~~c~i~~~~~---~dPv~~~~g-----h~f~~~~i~~~~~~~~~-~cP~~~~~~~~ 255 (281)
T 2c2l_A 207 DYLCGKISFELM---REPCITPSG-----ITYDRKDIEEHLQRVGH-FNPVTRSPLTQ 255 (281)
T ss_dssp STTBCTTTCSBC---SSEEECSSC-----CEEETTHHHHHHHHTCS-SCTTTCCCCCG
T ss_pred cccCCcCcCCHh---cCCeECCCC-----CEECHHHHHHHHHHCCC-CCcCCCCCCch
Confidence 567999998654 468899986 56779999999987554 49999998763
No 58
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=94.76 E-value=0.015 Score=45.08 Aligned_cols=48 Identities=29% Similarity=0.451 Sum_probs=35.9
Q ss_pred CCCeeeEcccccCCCCCceee--ccccCCcccc-ccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKM--ECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~--PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++.. .+.... ||+ +. +=..|+.+|... +..|++|+..+..
T Consensus 7 ~~~~C~IC~~~~---~~~~~~~~pCg-----H~~~C~~C~~~~~~~--~~~CPiCR~~i~~ 57 (64)
T 2vje_A 7 AIEPCVICQGRP---KNGCIVHGKTG-----HLMACFTCAKKLKKR--NKPCPVCRQPIQM 57 (64)
T ss_dssp GGSCCTTTSSSC---SCEEEEETTEE-----EEEECHHHHHHHHHT--TCCCTTTCCCCCE
T ss_pred CcCCCCcCCCCC---CCEEEECCCCC-----ChhhHHHHHHHHHHc--CCcCCCcCcchhc
Confidence 456899999764 344555 998 55 347999999964 4689999998864
No 59
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=94.40 E-value=0.0062 Score=51.90 Aligned_cols=45 Identities=18% Similarity=0.374 Sum_probs=36.8
Q ss_pred CCCeeeEcccccCCCCCceee-ccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~-PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
++..|.||+... .++... ||. +.+++.|+.+|+. ..|++|+..+.
T Consensus 21 ~~~~C~IC~~~~---~~pv~~~~Cg-----H~fC~~Ci~~~~~----~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNIL---REPVCLGGCE-----HIFCSNCVSDCIG----TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCC---SSCBCCCSSS-----CCBCTTTGGGGTT----TBCSSSCCBCS
T ss_pred hCCCCCCCChHh---hCccEeCCCC-----CHHHHHHHHHHhc----CCCcCCCCcCc
Confidence 468999998665 346666 887 7889999999986 68999999874
No 60
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=93.80 E-value=0.013 Score=52.17 Aligned_cols=49 Identities=24% Similarity=0.487 Sum_probs=38.8
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
+++..|-||+.... ++...+|. +.+++.|+.+|+.. +...|++|+.+..
T Consensus 29 ~~~~~C~IC~~~~~---~pv~~~Cg-----H~FC~~Ci~~~~~~-~~~~CP~Cr~~~~ 77 (141)
T 3knv_A 29 EAKYLCSACRNVLR---RPFQAQCG-----HRYCSFCLASILSS-GPQNCAACVHEGI 77 (141)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHGGG-SCEECHHHHHTTC
T ss_pred CcCcCCCCCChhhc---CcEECCCC-----CccCHHHHHHHHhc-CCCCCCCCCCccc
Confidence 46789999996653 46777887 78999999999963 4578999999753
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=93.22 E-value=0.052 Score=50.93 Aligned_cols=49 Identities=12% Similarity=0.091 Sum_probs=39.7
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|-||+.-. .++.+.||. +-+=+.|+.+|+...+. +|++|+..+..
T Consensus 105 ~~f~CPI~~elm---~DPV~~~~G-----htfer~~I~~~l~~~~~-tcP~t~~~l~~ 153 (179)
T 2f42_A 105 DYLCGKISFELM---REPCITPSG-----ITYDRKDIEEHLQRVGH-FDPVTRSPLTQ 153 (179)
T ss_dssp GGGBCTTTCSBC---SSEEECTTS-----CEEEHHHHHHHHHHTCS-BCTTTCCBCCG
T ss_pred HhhcccCccccC---CCCeECCCC-----CEECHHHHHHHHHhCCC-CCCCCcCCCCh
Confidence 678999998654 368888886 56789999999987655 79999998764
No 62
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=93.14 E-value=0.018 Score=43.27 Aligned_cols=45 Identities=16% Similarity=0.260 Sum_probs=35.2
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++... ++..+||. +.++..|+.+| ...|++|+..+..
T Consensus 5 ~~~~C~IC~~~~~---~p~~l~Cg-----H~fC~~Ci~~~-----~~~CP~Cr~~~~~ 49 (56)
T 1bor_A 5 QFLRCQQCQAEAK---CPKLLPCL-----HTLCSGCLEAS-----GMQCPICQAPWPL 49 (56)
T ss_dssp CCSSCSSSCSSCB---CCSCSTTS-----CCSBTTTCSSS-----SSSCSSCCSSSSC
T ss_pred cCCCceEeCCccC---CeEEcCCC-----CcccHHHHccC-----CCCCCcCCcEeec
Confidence 5678999987653 46778987 67889998874 6789999998763
No 63
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=92.97 E-value=0.041 Score=53.39 Aligned_cols=50 Identities=24% Similarity=0.509 Sum_probs=37.9
Q ss_pred CCeeeEcccccCCCCCceeeccc-cCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 266 EAVCRICFIELGEGFDALKMECG-CKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~-CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
-..|.||..-.. .+ .-|. |. ..+|..|+.+|++.+++..|+.|+......
T Consensus 180 i~~C~iC~~iv~-~g----~~C~~C~---~~~H~~C~~~~~~~~~~~~CP~C~~~W~~~ 230 (238)
T 3nw0_A 180 VKICNICHSLLI-QG----QSCETCG---IRMHLPCVAKYFQSNAEPRCPHCNDYWPHE 230 (238)
T ss_dssp CCBCTTTCSBCS-SC----EECSSSC---CEECHHHHHHHTTTCSSCBCTTTCCBCCSC
T ss_pred CCcCcchhhHHh-CC----cccCccC---hHHHHHHHHHHHHhCCCCCCCCCCCCCCCC
Confidence 578999986543 22 2343 54 568999999999988889999999986654
No 64
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=92.76 E-value=0.055 Score=48.57 Aligned_cols=50 Identities=26% Similarity=0.557 Sum_probs=39.2
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++...|-||++... ++...+|. +.+...|+.+|+..++ ..|++|+..+..
T Consensus 16 ~~~~~C~IC~~~~~---~pv~~~Cg-----H~fC~~Ci~~~~~~~~-~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALR---EAVQTPCG-----HRFCKACIIKSIRDAG-HKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCS---SEEECTTS-----CEEEHHHHHHHHHHHC-SBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhc---CcEECCCC-----CHHHHHHHHHHHHhCC-CCCCCCccCcch
Confidence 35689999997653 46677776 7789999999998754 499999988764
No 65
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=92.67 E-value=0.094 Score=43.31 Aligned_cols=47 Identities=19% Similarity=0.398 Sum_probs=37.5
Q ss_pred CCCeeeEcccccCCCCCceeec-cccCCccccccHHHHHHHHHHc----CCccccc--cccc
Q 010378 265 EEAVCRICFIELGEGFDALKME-CGCKGELAFAHRECAVKWFSIK----GNKTCEV--CKQE 319 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~P-C~CKGsLk~VH~~CL~kW~~~k----g~~~CEI--Ck~~ 319 (512)
++..|-||++-. .++...| |. +-+-+.|+.+|+... +..+|++ |...
T Consensus 6 ~~~~CPI~~~~~---~dPV~~~~cG-----h~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~ 59 (94)
T 2yu4_A 6 SGFTCPITKEEM---KKPVKNKVCG-----HTYEEDAIVRMIESRQKRKKKAYCPQIGCSHT 59 (94)
T ss_dssp SCCBCTTTCSBC---SSEEEESSSC-----CEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCC
T ss_pred cEeECcCcCchh---cCCEEcCCCC-----CeecHHHHHHHHHHccCcCCCCCCCcCcCccc
Confidence 568999998654 3588886 87 678899999999864 4679999 9865
No 66
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=91.72 E-value=0.075 Score=41.88 Aligned_cols=44 Identities=25% Similarity=0.649 Sum_probs=34.3
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCcccc-ccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++.. .++...||. +. +...|+.++ ..|++|+..+..
T Consensus 24 ~~~~C~IC~~~~---~~~~~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 24 EEKLCKICMDRN---IAIVFVPCG-----HLVTCKQCAEAV------DKCPMCYTVITF 68 (75)
T ss_dssp HHHSCSSSCSSC---CCBCCSSSC-----CCCBCHHHHHHC------SBCTTTCCBCCC
T ss_pred CCCCCCcCCCCC---CCEEEecCC-----CHHHHHHHhhCC------CCCccCCceecC
Confidence 456899998664 457778997 66 789998643 789999999875
No 67
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=90.65 E-value=0.047 Score=55.74 Aligned_cols=44 Identities=25% Similarity=0.754 Sum_probs=36.6
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCcccc-ccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
++..|.||++.. .++...||. +. +...|+.+| ..|++|+..+..
T Consensus 294 ~~~~C~IC~~~~---~~~v~lpCg-----H~~fC~~C~~~~------~~CP~CR~~i~~ 338 (345)
T 3t6p_A 294 EERTCKVCMDKE---VSVVFIPCG-----HLVVCQECAPSL------RKCPICRGIIKG 338 (345)
T ss_dssp TTCBCTTTSSSB---CCEEEETTC-----CEEECTTTGGGC------SBCTTTCCBCCE
T ss_pred CCCCCCccCCcC---CceEEcCCC-----ChhHhHHHHhcC------CcCCCCCCCccC
Confidence 568999999664 457788998 66 889999998 689999999874
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=90.46 E-value=0.15 Score=50.79 Aligned_cols=50 Identities=20% Similarity=0.311 Sum_probs=39.7
Q ss_pred CCCeeeEcccccCCCCCceee-ccccCCccccccHHHHHHHHHHcCCccccc--cccceee
Q 010378 265 EEAVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEV--CKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~-PC~CKGsLk~VH~~CL~kW~~~kg~~~CEI--Ck~~y~n 322 (512)
.+..|-||+.-. .++... .|+ +-+=+.|+.+|+...+...|++ |+..+..
T Consensus 180 ~el~CPIcl~~f---~DPVts~~CG-----HsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPY---EAPLISRKCN-----HVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBC---SSEEEESSSC-----CEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcc---cCCeeeCCCC-----CcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 568999998664 346654 676 6678999999998777899999 9997653
No 69
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=90.38 E-value=0.14 Score=41.76 Aligned_cols=50 Identities=16% Similarity=0.422 Sum_probs=36.5
Q ss_pred CCCeeeEcccccCCCCCcee-eccccCCccccccHHHHHHHHHHc---C---Cccccc--cccce
Q 010378 265 EEAVCRICFIELGEGFDALK-MECGCKGELAFAHRECAVKWFSIK---G---NKTCEV--CKQEV 320 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li-~PC~CKGsLk~VH~~CL~kW~~~k---g---~~~CEI--Ck~~y 320 (512)
+...|-||++... ..+.+. .+|. +.+.+.|+.+++..+ | ...|+. |+..+
T Consensus 4 ~~~~C~IC~~~~~-~~~~~~l~~Cg-----H~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~~ 62 (94)
T 1wim_A 4 GSSGCKLCLGEYP-VEQMTTIAQCQ-----CIFCTLCLKQYVELLIKEGLETAISCPDAACPKQG 62 (94)
T ss_dssp SBCCCSSSCCCCB-GGGEEEETTTT-----EEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSCC
T ss_pred CCcCCcccCcccc-cccceEcCCCC-----CcccHHHHHHHHHHHhhcCCcccccCccccCCCCC
Confidence 4568999997753 223333 3788 788999999999764 3 469999 99884
No 70
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=87.29 E-value=0.13 Score=41.56 Aligned_cols=45 Identities=29% Similarity=0.716 Sum_probs=34.9
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCcccc-ccHHHHHHHHHHcCCccccccccceeec
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAF-AHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~-VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
++..|.||++.. .++...||. +. +=..|+.+| ..|++|+..+...
T Consensus 17 ~~~~C~IC~~~~---~~~v~~pCg-----H~~~C~~C~~~~------~~CP~Cr~~i~~~ 62 (79)
T 2yho_A 17 EAMLCMVCCEEE---INSTFCPCG-----HTVCCESCAAQL------QSCPVCRSRVEHV 62 (79)
T ss_dssp HHTBCTTTSSSB---CCEEEETTC-----BCCBCHHHHTTC------SBCTTTCCBCCEE
T ss_pred CCCEeEEeCccc---CcEEEECCC-----CHHHHHHHHHhc------CcCCCCCchhhCe
Confidence 346899998653 457889998 44 557899887 3999999998863
No 71
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=85.18 E-value=0.52 Score=36.43 Aligned_cols=47 Identities=6% Similarity=0.034 Sum_probs=35.5
Q ss_pred CeeeEcccccCCCCCceee-ccccCCccccccHHHHHHHHHHcCCccccccccceeec
Q 010378 267 AVCRICFIELGEGFDALKM-ECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENL 323 (512)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~-PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nl 323 (512)
..|.||++-. .++.+. +|. .-+=+.|+++|+...+ +|++++.++...
T Consensus 4 ~~CpIs~~~m---~dPV~~~~sG-----~~yer~~I~~~l~~~~--~cP~t~~~L~~~ 51 (61)
T 2bay_A 4 MLCAISGKVP---RRPVLSPKSR-----TIFEKSLLEQYVKDTG--NDPITNEPLSIE 51 (61)
T ss_dssp CCCTTTCSCC---SSEEEETTTT-----EEEEHHHHHHHHHHHS--BCTTTCCBCCGG
T ss_pred EEecCCCCCC---CCCEEeCCCC-----cEEcHHHHHHHHHhCC--CCcCCcCCCChh
Confidence 5788987654 356777 555 4678999999998764 499999987654
No 72
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=84.92 E-value=0.34 Score=38.53 Aligned_cols=54 Identities=22% Similarity=0.337 Sum_probs=35.8
Q ss_pred CCCCCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH--cCCcccccccccee
Q 010378 260 EDIPEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI--KGNKTCEVCKQEVE 321 (512)
Q Consensus 260 Edi~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEICk~~y~ 321 (512)
+..+..+..|.||... ++.+. | .+=-+.+|..||.-.+.. ++.+.|+.|...-.
T Consensus 6 ~~~~~~~~~C~vC~~~----~~ll~--C--d~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~~ 61 (66)
T 2lri_C 6 QQNLAPGARCGVCGDG----TDVLR--C--THCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDVT 61 (66)
T ss_dssp TTCCCTTCCCTTTSCC----TTCEE--C--SSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCCC
T ss_pred ccCCCCCCCcCCCCCC----CeEEE--C--CCCCCceecccCCCccCcCCCCCEECccccCCCc
Confidence 3444566789999743 33322 2 233368999999877654 57899999986543
No 73
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=78.68 E-value=0.66 Score=38.67 Aligned_cols=55 Identities=25% Similarity=0.415 Sum_probs=34.2
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCcccccccccee
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVE 321 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~ 321 (512)
+++..|.||.....+.++. +.-|. +=-..+|..|+.-=..-.|.+.|+.|.....
T Consensus 23 ~~~~~C~vC~~~~s~~~~~-ll~CD--~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~~ 77 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNV-ILFCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQSRA 77 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEE-EEECS--SSCCCCCHHHHTCSSCCSSCCCCHHHHHHTT
T ss_pred CCCCcCCcCCCCCCCCCCC-EEECC--CCCchhhcccCCCCccCCCceECccccCccc
Confidence 4567999998654222333 33332 2224689999864333457899999977543
No 74
>2ku3_A Bromodomain-containing protein 1; PHD finger, chromatin regulator, metal-binding, finger, signaling protein; NMR {Homo sapiens}
Probab=71.73 E-value=0.8 Score=36.86 Aligned_cols=53 Identities=26% Similarity=0.443 Sum_probs=33.2
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccc
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQE 319 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~ 319 (512)
++...|.||.....+.++.++ -|. +=-..+|..|+.-=..-+|.+.|+.|...
T Consensus 14 ~~~~~C~vC~~~~s~~~~~ll-~CD--~C~~~~H~~Cl~~~~vP~g~W~C~~C~~~ 66 (71)
T 2ku3_A 14 DEDAVCSICMDGESQNSNVIL-FCD--MCNLAVHQECYGVPYIPEGQWLCRHCLQS 66 (71)
T ss_dssp CSSCSCSSSCCCCCCSSSCEE-ECS--SSCCEEEHHHHTCSSCCSSCCCCHHHHHH
T ss_pred CCCCCCCCCCCCCCCCCCCEE-ECC--CCCCccccccCCCCcCCCCCcCCccCcCc
Confidence 356789999866433333333 222 22257899998633334678999999764
No 75
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=69.10 E-value=4.2 Score=34.84 Aligned_cols=52 Identities=29% Similarity=0.492 Sum_probs=36.3
Q ss_pred CCCeeeEcccccC--CCCCcee--eccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 265 EEAVCRICFIELG--EGFDALK--MECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~--e~~~~Li--~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
...+|.||-++.+ +.+++++ ..|. --|=+.|.+-=. ..|+..|+.||.+|+-
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~-----FPvCrpCyEYEr-keG~q~CpqCktrYkr 70 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECG-----FPACRPCYEYER-REGTQNCPQCKTRYKR 70 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSC-----CCCCHHHHHHHH-HTSCSSCTTTCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccC-----ChhhHHHHHHHH-hccCccccccCCcccc
Confidence 4589999976654 3455554 3343 237789987644 4589999999999984
No 76
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.07 E-value=0.54 Score=39.05 Aligned_cols=55 Identities=15% Similarity=0.271 Sum_probs=36.4
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH------HcCCccccccccceee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS------IKGNKTCEVCKQEVEN 322 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~------~kg~~~CEICk~~y~n 322 (512)
+...|.+|.....+.++.++.==.|. ..+|..|+.-=+. -.+.|.|..|....+.
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~---~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~~ 75 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECH---NLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMKR 75 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSC---CEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHCC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCC---CeEcCccCCCcccccccCCCCCCeeCccccchhhh
Confidence 56899999876543334444322333 5689999875442 3578999999877653
No 77
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=61.02 E-value=4.6 Score=34.10 Aligned_cols=49 Identities=24% Similarity=0.499 Sum_probs=31.0
Q ss_pred CCCCCeeeEcccccCCCCCceee--ccccCCccccccHHHHHHHHHH--cCCccccccccc
Q 010378 263 PEEEAVCRICFIELGEGFDALKM--ECGCKGELAFAHRECAVKWFSI--KGNKTCEVCKQE 319 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~~~Li~--PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEICk~~ 319 (512)
+++...| ||.... .++ ++. -|.|.. .++|..|+. +.. .+.+.|+.|...
T Consensus 33 ~~e~~yC-iC~~~~--~g~-MI~CD~~dC~~--~WfH~~CVg--l~~~p~g~W~Cp~C~~~ 85 (91)
T 1weu_A 33 PNEPTYC-LCHQVS--YGE-MIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQE 85 (91)
T ss_dssp SCCCBCS-TTCCBC--CSC-CCCCSCSSCSC--CCCCSTTTT--CSSCCCSSCCCTTTCCC
T ss_pred CCCCcEE-ECCCCC--CCC-EeEecCCCCCC--CCEecccCC--cCcCCCCCEECcCccCc
Confidence 3456777 997653 232 332 234542 589999987 332 367999999764
No 78
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=52.69 E-value=3.7 Score=32.86 Aligned_cols=49 Identities=22% Similarity=0.422 Sum_probs=30.8
Q ss_pred CCCCeeeEcccccCCCCCceee--ccccCCccccccHHHHHHHHHH--cCCccccccccce
Q 010378 264 EEEAVCRICFIELGEGFDALKM--ECGCKGELAFAHRECAVKWFSI--KGNKTCEVCKQEV 320 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~--PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEICk~~y 320 (512)
++...| ||.... .+ .++. -|.|.. .++|..|+. +.. .+.+.|+.|...-
T Consensus 14 ~~~~~C-~C~~~~--~g-~MI~CD~~~C~~--~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 14 NEPTYC-LCHQVS--YG-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp TSCCCS-TTCCCS--CS-SEECCSCSSCSC--CCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCCEE-ECCCCC--CC-CEeEeeCCCCCC--ccEecccCC--cCcCCCCCEECCCCCccc
Confidence 456788 897653 23 2332 233542 589999987 333 3789999997653
No 79
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=47.05 E-value=6.5 Score=30.31 Aligned_cols=47 Identities=19% Similarity=0.401 Sum_probs=30.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH--HcCCccccccccc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS--IKGNKTCEVCKQE 319 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~--~kg~~~CEICk~~ 319 (512)
++..|.+|... ++.+. |.+=-+.+|..|+.-=+. -++.+.|+.|..+
T Consensus 10 ~~~~C~vC~~~----g~ll~----CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 10 HQDYCEVCQQG----GEIIL----CDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCSSCTTTSCC----SSEEE----CSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCccCCCC----CcEEE----CCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 45789999753 23332 223335799999875332 3578999999764
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=45.82 E-value=2.3 Score=39.76 Aligned_cols=49 Identities=24% Similarity=0.447 Sum_probs=32.1
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH--HcCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS--IKGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~--~kg~~~CEICk~~y~ 321 (512)
.+..|.+|..+ ++ + .- |.+--+..|..|+.--+. -+|.+.|+.|...-.
T Consensus 6 ~~~~C~~C~~~----g~-l-l~--Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~~ 56 (207)
T 3u5n_A 6 NEDWCAVCQNG----GD-L-LC--CEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIGK 56 (207)
T ss_dssp SCSSBTTTCCC----EE-E-EE--CSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSSS
T ss_pred CCCCCCCCCCC----Cc-e-EE--cCCCCCccCCccCCCCCCCCCCCCEEeCceeCccc
Confidence 45679999743 22 2 22 333346799999865543 257899999987543
No 81
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=44.97 E-value=3 Score=32.96 Aligned_cols=52 Identities=13% Similarity=0.195 Sum_probs=32.3
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH--cCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI--KGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEICk~~y~ 321 (512)
+...|.||.... .++.++. |.+=-.++|..|+.--... .+.+.|+.|.....
T Consensus 17 ~~~~C~~C~~~~--~~~~mi~---CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPD--DGSPMIG---CDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCC--SSCCEEE---CSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCC--CCCCEEE---cCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 456799997653 2333333 2232379999998643322 26789999987654
No 82
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=43.60 E-value=2.7 Score=32.39 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=32.7
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHH-----HHcCCccccccccc
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWF-----SIKGNKTCEVCKQE 319 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~-----~~kg~~~CEICk~~ 319 (512)
.++..|.+|.....+.++.++. | .+=-..+|..|+.-=+ ...+.+.|..|...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~-C--d~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~ 61 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVI-C--DKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFA 61 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEE-C--SSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHT
T ss_pred CCCCCCCCCCCCCCCCCCCEEE-C--CCCChHHHhhhCCCcccccccCCCCCEECCCCcCc
Confidence 3567999998654332333332 2 2222578999987432 13578999999765
No 83
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=42.89 E-value=2.4 Score=35.40 Aligned_cols=49 Identities=22% Similarity=0.437 Sum_probs=30.1
Q ss_pred CCCeeeEcccccCCCCCceeecc-ccCCccccccHHHHHHH--HHHcCCccccccccc
Q 010378 265 EEAVCRICFIELGEGFDALKMEC-GCKGELAFAHRECAVKW--FSIKGNKTCEVCKQE 319 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC-~CKGsLk~VH~~CL~kW--~~~kg~~~CEICk~~ 319 (512)
+...|.||..... . +. +.-| .|. +.+|..||.-= -.-++.+.|+.|...
T Consensus 15 ~~~~C~vC~~~~~-~-~~-ll~CD~C~---~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 15 DSYICQVCSRGDE-D-DK-LLFCDGCD---DNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCSSSCCSGG-G-GG-CEECTTTC---CEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred CCCCCccCCCcCC-C-CC-EEEcCCCC---chhccccCCCCcccCCCCCcCCccCcCc
Confidence 4568999986542 2 22 2223 333 57999998511 122578999999765
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=41.07 E-value=5.1 Score=29.42 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=27.2
Q ss_pred CeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH--HcCCcccccccc
Q 010378 267 AVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS--IKGNKTCEVCKQ 318 (512)
Q Consensus 267 ~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~--~kg~~~CEICk~ 318 (512)
+.|.||..... .++.+. |. +=-+.+|..|+.-=+. -++.+.|+.|..
T Consensus 1 a~C~vC~~~~~-~~~ll~--Cd--~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 1 ARCKVCRKKGE-DDKLIL--CD--ECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCCTTTCCSSC-CSCCEE--CT--TTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCC-CCCEEE--CC--CCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 36888976532 233222 22 2236789999842111 246789999964
No 85
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=37.13 E-value=7.2 Score=35.09 Aligned_cols=52 Identities=17% Similarity=0.310 Sum_probs=32.7
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH---HcCCccccccccce
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS---IKGNKTCEVCKQEV 320 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~---~kg~~~CEICk~~y 320 (512)
++...| +|..... ++..++.=-.|. .+.|..|+.---. ..+.+.|+.|...-
T Consensus 6 ~~~~~C-~C~~~~~-~~~~mi~Cd~C~---~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~~ 60 (174)
T 2ri7_A 6 DTKLYC-ICKTPED-ESKFYIGCDRCQ---NWYHGRCVGILQSEAELIDEYVCPQCQSTE 60 (174)
T ss_dssp -CCEET-TTTEECC-TTSCEEECTTTC---CEEEHHHHTCCHHHHTTCSSCCCHHHHHHH
T ss_pred CCCcEe-eCCCCCC-CCCCEeECCCCC---chhChhhcCCchhhccCccCeecCCCcchh
Confidence 356789 9976542 233445433453 7999999853222 24679999998753
No 86
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=36.60 E-value=5 Score=36.65 Aligned_cols=48 Identities=21% Similarity=0.430 Sum_probs=31.4
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH--cCCccccccccce
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI--KGNKTCEVCKQEV 320 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEICk~~y 320 (512)
++..|.+|..+ ++. .-| .+=-+..|..|+.--+.. +|.+.|..|...-
T Consensus 3 ~~~~C~~C~~~----g~l--l~C--d~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG----GEL--LCC--EKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC----SSC--EEC--SSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC----Cee--eec--CCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 45689999743 332 222 233367899998655432 5789999998653
No 87
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=35.95 E-value=25 Score=31.49 Aligned_cols=46 Identities=15% Similarity=0.343 Sum_probs=30.6
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHH------H---HcCCcccccccc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWF------S---IKGNKTCEVCKQ 318 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~------~---~kg~~~CEICk~ 318 (512)
.+..|++|.++ ++.+ - |++--+.+|.+|+.+=+ . ..+.|.|..|..
T Consensus 56 ~~~~C~vC~dG----G~Ll--c--Cd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~ 110 (129)
T 3ql9_A 56 MDEQCRWCAEG----GNLI--C--CDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHP 110 (129)
T ss_dssp CBSSCTTTCCC----SEEE--E--CSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCC
T ss_pred CCCcCeecCCC----CeeE--e--cCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCC
Confidence 44579999743 3332 1 23444789999999742 2 357899999954
No 88
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=35.16 E-value=6.7 Score=33.06 Aligned_cols=37 Identities=19% Similarity=0.155 Sum_probs=22.6
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS 306 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~ 306 (512)
++..|.||.... +.++ |+ -| .+=-+.+|..||.-.+.
T Consensus 6 ~~~~C~~C~~~g-~~~~-ll-~C--~~C~~~~H~~Cl~~~~~ 42 (111)
T 2ysm_A 6 SGANCAVCDSPG-DLLD-QF-FC--TTCGQHYHGMCLDIAVT 42 (111)
T ss_dssp CCSCBTTTCCCC-CTTT-SE-EC--SSSCCEECTTTTTCCCC
T ss_pred CCCCCcCCCCCC-CCcC-Ce-EC--CCCCCCcChHHhCCccc
Confidence 567999997653 2222 22 22 22236789999987654
No 89
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=34.06 E-value=5.2 Score=30.87 Aligned_cols=47 Identities=21% Similarity=0.422 Sum_probs=28.7
Q ss_pred CCCCeeeEcccccCCCCCceee--ccccCCccccccHHHHHHHHHH--cCCcccccccc
Q 010378 264 EEEAVCRICFIELGEGFDALKM--ECGCKGELAFAHRECAVKWFSI--KGNKTCEVCKQ 318 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~--PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEICk~ 318 (512)
++...| ||.... .+ .++. -|.|.. .++|..|+. +.. .+.+.|+.|..
T Consensus 8 ~e~~~C-~C~~~~--~g-~mi~CD~cdC~~--~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 8 NEPTYC-LCHQVS--YG-EMIGCDNPDCSI--EWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp -CCEET-TTTEEC--CS-EEEECSCTTCSS--CEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCCCEE-ECCCcC--CC-CEEEeCCCCCCC--ceEehhcCC--CCcCCCCCEECcCccC
Confidence 355677 897653 23 3332 233542 589999987 433 37789998864
No 90
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=33.25 E-value=5.2 Score=31.18 Aligned_cols=49 Identities=22% Similarity=0.398 Sum_probs=30.8
Q ss_pred CCCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH--HcCCccccccccc
Q 010378 263 PEEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS--IKGNKTCEVCKQE 319 (512)
Q Consensus 263 ~eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~--~kg~~~CEICk~~ 319 (512)
+.++..|.||... ++.+. | .+=-..+|..|+.-=+. -++.+.|+.|...
T Consensus 5 ~~~~~~C~vC~~~----g~ll~--C--D~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~~ 55 (66)
T 1xwh_A 5 QKNEDECAVCRDG----GELIC--C--DGCPRAFHLACLSPPLREIPSGTWRCSSCLQA 55 (66)
T ss_dssp CSCCCSBSSSSCC----SSCEE--C--SSCCCEECTTTSSSCCSSCCSSCCCCHHHHHT
T ss_pred CCCCCCCccCCCC----CCEEE--c--CCCChhhcccccCCCcCcCCCCCeECccccCc
Confidence 3466799999753 23332 2 23335789999863222 2478999999754
No 91
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=33.21 E-value=4.5 Score=31.20 Aligned_cols=47 Identities=21% Similarity=0.341 Sum_probs=29.2
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH--HcCCccccccccc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS--IKGNKTCEVCKQE 319 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~--~kg~~~CEICk~~ 319 (512)
++..|.+|... ++.+ -| .+=-+.+|..|+.-=+. -.+.+.|..|...
T Consensus 8 ~~~~C~vC~~~----g~ll--~C--d~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~ 56 (61)
T 1mm2_A 8 HMEFCRVCKDG----GELL--CC--DTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCP 56 (61)
T ss_dssp SCSSCTTTCCC----SSCB--CC--SSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTT
T ss_pred CCCcCCCCCCC----CCEE--Ec--CCCCHHHcccccCCCcCcCCCCccCChhhcCc
Confidence 45789999743 2322 22 22235689999874322 2467899999764
No 92
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=33.07 E-value=11 Score=31.77 Aligned_cols=47 Identities=19% Similarity=0.434 Sum_probs=31.1
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH--HcCCccccccccc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS--IKGNKTCEVCKQE 319 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~--~kg~~~CEICk~~ 319 (512)
++..|.+|... ++.+. |.+=-+.+|..|+.-=+. -++.+.|..|...
T Consensus 24 n~~~C~vC~~~----g~LL~----CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 24 SATICRVCQKP----GDLVM----CNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSCCSSSCSS----SCCEE----CTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCcCcCcCCC----CCEEE----CCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 56789999744 23332 334446789999843222 2578999999865
No 93
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=32.39 E-value=33 Score=27.38 Aligned_cols=52 Identities=13% Similarity=0.153 Sum_probs=32.4
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH---cCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI---KGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~---kg~~~CEICk~~y~ 321 (512)
+...| ||..... .+..++.=-.|. .++|..|+.-=-.. -....|+.|.....
T Consensus 11 ~~~~C-~C~~~~d-~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 65 (79)
T 1wep_A 11 VPVYC-LCRQPYN-VNHFMIECGLCQ---DWFHGSCVGIEEENAVDIDIYHCPDCEAVFG 65 (79)
T ss_dssp CCCCS-TTSCSCC-SSSCEEEBTTTC---CEEEHHHHTCCHHHHTTCSBBCCTTTTTTSC
T ss_pred CccEE-EcCCccC-CCCceEEcCCCC---CcEEeeecCcccccccCCCeEECCCcccccC
Confidence 45667 8976542 234455433453 79999998532222 25689999987653
No 94
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=31.16 E-value=13 Score=31.86 Aligned_cols=50 Identities=16% Similarity=0.298 Sum_probs=27.5
Q ss_pred CeeeEcccccCC-----CCCceeeccccCCccccccHHHHHHHHH-----HcCCc------cccccccc
Q 010378 267 AVCRICFIELGE-----GFDALKMECGCKGELAFAHRECAVKWFS-----IKGNK------TCEVCKQE 319 (512)
Q Consensus 267 ~vCRICl~e~~e-----~~~~Li~PC~CKGsLk~VH~~CL~kW~~-----~kg~~------~CEICk~~ 319 (512)
..|.||+.+..+ +.+.|+.==.|. ...|..||..+.. .++.+ .|.+|+..
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~---~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~~C~~C~~~ 67 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCG---RSGHPTCLQFTLNMTEAVKTYKWQCIECKSCILCGTS 67 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSC---CEECTTTTTCCHHHHHHHHHTTCCCGGGCCCTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCC---CccchhhCCChhhhhhccCCCccCccccCccCccccc
Confidence 479999865421 112333222233 4689999976532 24555 45566653
No 95
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=31.06 E-value=13 Score=32.22 Aligned_cols=45 Identities=20% Similarity=0.188 Sum_probs=27.2
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH--cCCcccccc
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI--KGNKTCEVC 316 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEIC 316 (512)
+++..|.+|... ++ +.-|..++=-+.+|..||. +.. +|.+.|+-|
T Consensus 13 ~~~~~C~~C~~~----G~--ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c 59 (107)
T 4gne_A 13 MHEDYCFQCGDG----GE--LVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWH 59 (107)
T ss_dssp SSCSSCTTTCCC----SE--EEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGG
T ss_pred CCCCCCCcCCCC----Cc--EeEECCCCCCcccccccCc--CCcCCCCCEECCCC
Confidence 356789999732 22 4557522223589999997 433 466666644
No 96
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=30.51 E-value=55 Score=25.75 Aligned_cols=51 Identities=16% Similarity=0.238 Sum_probs=31.3
Q ss_pred CCCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH-------HcCCccccccccce
Q 010378 264 EEEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS-------IKGNKTCEVCKQEV 320 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~-------~kg~~~CEICk~~y 320 (512)
++...| ||.... .+..++.==.|. .++|..|+.-=.. ......|+.|....
T Consensus 14 ~~~~~C-~C~~~~--~~~~MI~Cd~C~---~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~~ 71 (76)
T 1wem_A 14 PNALYC-ICRQPH--NNRFMICCDRCE---EWFHGDCVGISEARGRLLERNGEDYICPNCTILS 71 (76)
T ss_dssp TTCCCS-TTCCCC--CSSCEEECSSSC---CEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHHS
T ss_pred CCCCEE-ECCCcc--CCCCEEEeCCCC---CcEeCeEEccchhhhhhccCCCCeEECcCCcCcc
Confidence 345677 787654 233455433454 7999999842111 23678999997653
No 97
>2jmi_A Protein YNG1, ING1 homolog 1; PHD, histone, recognition, yeast, protein binding; NMR {Saccharomyces cerevisiae} PDB: 2jmj_A*
Probab=27.40 E-value=6.9 Score=32.97 Aligned_cols=47 Identities=26% Similarity=0.419 Sum_probs=30.2
Q ss_pred CCCCeeeEcccccCCCCCcee--eccccCCccccccHHHHHHHHHH--cCCccccc-ccc
Q 010378 264 EEEAVCRICFIELGEGFDALK--MECGCKGELAFAHRECAVKWFSI--KGNKTCEV-CKQ 318 (512)
Q Consensus 264 eee~vCRICl~e~~e~~~~Li--~PC~CKGsLk~VH~~CL~kW~~~--kg~~~CEI-Ck~ 318 (512)
++...| ||.... .++ ++ --|.|.. .++|..|+- +.. .+.+.|+. |..
T Consensus 24 ~~~~yC-iC~~~~--~g~-MI~CD~c~C~~--eWfH~~CVg--l~~~p~~~W~Cp~cC~~ 75 (90)
T 2jmi_A 24 QEEVYC-FCRNVS--YGP-MVACDNPACPF--EWFHYGCVG--LKQAPKGKWYCSKDCKE 75 (90)
T ss_dssp CCSCCS-TTTCCC--SSS-EECCCSSSCSC--SCEETTTSS--CSSCTTSCCCSSHHHHH
T ss_pred CCCcEE-EeCCCC--CCC-EEEecCCCCcc--ccCcCccCC--CCcCCCCCccCChhhcc
Confidence 356788 897643 233 33 3355653 689999985 222 36899999 974
No 98
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=27.21 E-value=43 Score=29.03 Aligned_cols=36 Identities=22% Similarity=0.486 Sum_probs=29.3
Q ss_pred eeeccccCCccccccHHHHHHHHHHcCCccccccccceeecc
Q 010378 283 LKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVENLP 324 (512)
Q Consensus 283 Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~nlp 324 (512)
-..||+ +.+=++|+..|-+. +..+|+.|+.++..+-
T Consensus 16 RmIPCk-----HvFCydCa~~~~~~-~~k~Cp~C~~~V~rVe 51 (101)
T 3vk6_A 16 RMIPCK-----HVFCYDCAILHEKK-GDKMCPGCSDPVQRIE 51 (101)
T ss_dssp EEETTC-----CEEEHHHHHHHHHT-TCCBCTTTCCBCSEEE
T ss_pred eecccc-----ccHHHHHHHHHHhc-cCCCCcCcCCeeeeeE
Confidence 468898 77889999999754 5679999999988764
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=26.98 E-value=31 Score=31.23 Aligned_cols=46 Identities=15% Similarity=0.337 Sum_probs=30.8
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHH---------HcCCcccccccc
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFS---------IKGNKTCEVCKQ 318 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~---------~kg~~~CEICk~ 318 (512)
.+..|++|.++ ++.+. | .+=-+.+|..||..=+. ..+.|.|..|..
T Consensus 62 ~~d~C~vC~~G----G~Llc--C--D~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 62 MDEQCRWCAEG----GNLIC--C--DFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp CBCSCSSSCCC----SSEEE--C--SSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCeecccCCC----CcEEe--C--CCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 45689999744 33332 2 22236799999986552 358899999964
No 100
>2kdr_X NS4B, P27, non-structural protein 4B; HCV, 227-254 segment, membranous WEB, replication complex, membrane, transmembrane, RNA-binding; NMR {Hepatitis c virus}
Probab=25.81 E-value=57 Score=22.41 Aligned_cols=22 Identities=27% Similarity=0.590 Sum_probs=19.0
Q ss_pred HHHhHHHHhhHhhhhhhhHHHH
Q 010378 390 CILGLLASTTATTMVRKSFIWL 411 (512)
Q Consensus 390 ~iLGll~s~~a~~mv~~~yiW~ 411 (512)
-|.++|+|++.+.++.+-+-|+
T Consensus 6 ~VtaiLssLTvTsLlr~lh~wi 27 (28)
T 2kdr_X 6 RVTAILSSLTVTQLLRRLHQWI 27 (28)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHhhc
Confidence 4678899999999999988886
No 101
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=24.11 E-value=37 Score=28.82 Aligned_cols=35 Identities=17% Similarity=0.303 Sum_probs=20.2
Q ss_pred CCeeeEcccccCC----CCCceeeccccCCccccccHHHHHH
Q 010378 266 EAVCRICFIELGE----GFDALKMECGCKGELAFAHRECAVK 303 (512)
Q Consensus 266 e~vCRICl~e~~e----~~~~Li~PC~CKGsLk~VH~~CL~k 303 (512)
..+|.+|+..... ..+.|+.==.| -+.+|..||..
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C---~~~~H~~Cl~~ 43 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADC---GNSGHPSCLKF 43 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTT---CCEECHHHHTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhc---CCCCCCchhcC
Confidence 4689999865421 12234422222 25789999953
No 102
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=22.96 E-value=26 Score=30.29 Aligned_cols=46 Identities=24% Similarity=0.654 Sum_probs=31.1
Q ss_pred CCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHHcCCccccccccceee
Q 010378 266 EAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSIKGNKTCEVCKQEVEN 322 (512)
Q Consensus 266 e~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~kg~~~CEICk~~y~n 322 (512)
-..|+.|+.+. +-|+ .|. -+|.=..||..-+.. +..|+||++....
T Consensus 28 ~~nCKsCWf~~----k~LV-~C~----dHYLCl~CLtlmL~~--SdrCpIC~~pLPt 73 (99)
T 2ko5_A 28 PQFCKSCWFEN----KGLV-ECN----NHYLCLNCLTLLLSV--SNRCPICKMPLPT 73 (99)
T ss_dssp CCCCCSSCSCC----SSEE-ECS----SCEEEHHHHHHTCSS--SSEETTTTEECCC
T ss_pred cccChhhcccc----CCee-eec----chhhHHHHHHHHHhh--ccCCcccCCcCCc
Confidence 36799998653 1244 343 367777887766644 5789999999653
No 103
>3kv5_D JMJC domain-containing histone demethylation protein 1D; epigenetics, histone CODE, jumonji lysine demethylase, metal-binding, zinc, zinc-finger; HET: OGA; 2.39A {Homo sapiens} PDB: 3kv6_A*
Probab=20.27 E-value=17 Score=38.73 Aligned_cols=52 Identities=15% Similarity=0.146 Sum_probs=31.9
Q ss_pred CCCeeeEcccccCCCCCceeeccccCCccccccHHHHHHHHHH---cCCcccccccccee
Q 010378 265 EEAVCRICFIELGEGFDALKMECGCKGELAFAHRECAVKWFSI---KGNKTCEVCKQEVE 321 (512)
Q Consensus 265 ee~vCRICl~e~~e~~~~Li~PC~CKGsLk~VH~~CL~kW~~~---kg~~~CEICk~~y~ 321 (512)
+...| ||.... +.+..++.=..|. .+.|..|+.-=-.. -+...|+.|.....
T Consensus 36 ~~~yC-~C~~~~-d~~~~MIqCd~C~---~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~~ 90 (488)
T 3kv5_D 36 PPVYC-VCRQPY-DVNRFMIECDICK---DWFHGSCVGVEEHHAVDIDLYHCPNCAVLHG 90 (488)
T ss_dssp CCEET-TTTEEC-CTTSCEEEBTTTC---CEEEHHHHTCCGGGGGGEEEBCCHHHHHHHC
T ss_pred CCeEE-eCCCcC-CCCCCeEEccCCC---CceeeeecCcCcccccCCCEEECCCCcCCcC
Confidence 34455 787553 2244566655665 79999998421111 14589999987643
Done!