BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010381
         (512 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2V70|A Chain A, Third Lrr Domain Of Human Slit2
 pdb|2V70|B Chain B, Third Lrr Domain Of Human Slit2
 pdb|2V70|C Chain C, Third Lrr Domain Of Human Slit2
 pdb|2V70|D Chain D, Third Lrr Domain Of Human Slit2
          Length = 220

 Score = 30.8 bits (68), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/108 (25%), Positives = 46/108 (42%), Gaps = 7/108 (6%)

Query: 351 LQKLEWLKLVNESKPSRMVLSEYQF--PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKL 408
            +KL  L+ +N S      + E  F     +  + L++  L+       + L  ++ L L
Sbjct: 53  FKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLML 112

Query: 409 KQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESL 456
           + N     ++ CVG+  F  L  + L S+Y     T+  GA   L SL
Sbjct: 113 RSN-----RITCVGNDSFIGLSSVRLLSLYDNQITTVAPGAFDTLHSL 155


>pdb|1A9N|A Chain A, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
           Complex Bound To A Fragment Of U2 Small Nuclear Rna
 pdb|1A9N|C Chain C, Crystal Structure Of The Spliceosomal U2b''-U2a' Protein
           Complex Bound To A Fragment Of U2 Small Nuclear Rna
          Length = 176

 Score = 30.4 bits (67), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 22/61 (36%), Positives = 35/61 (57%), Gaps = 5/61 (8%)

Query: 351 LQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE----DPMPTLEKLPYVQVL 406
           L++L+ L LVN ++  R+     Q  P LT L L+N  L E    DP+ +L+ L Y+ +L
Sbjct: 63  LRRLKTL-LVNNNRICRIGEGLDQALPDLTELILTNNSLVELGDLDPLASLKSLTYLCIL 121

Query: 407 K 407
           +
Sbjct: 122 R 122


>pdb|4HEC|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
           From Mycobacterium Tuberculosis
 pdb|4HEC|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
           From Mycobacterium Tuberculosis
 pdb|4HVJ|A Chain A, Crystal Structure Of A Putative Uncharacterized Protein
           From Mycobacterium Tuberculosis In Complex With Amp
 pdb|4HVJ|B Chain B, Crystal Structure Of A Putative Uncharacterized Protein
           From Mycobacterium Tuberculosis In Complex With Amp
          Length = 190

 Score = 30.4 bits (67), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 12/33 (36%), Positives = 20/33 (60%), Gaps = 2/33 (6%)

Query: 63  HLKICCIY--LCVFPPSIEISTRQLYQLWEAEG 93
           H+ +C ++  +   PP++   TR+L QLWE  G
Sbjct: 118 HVALCQLWGPMTALPPTVPRFTRELRQLWEDRG 150


>pdb|2O6Q|A Chain A, Structural Diversity Of The Hagfish Variable Lymphocyte
           Receptors A29
          Length = 270

 Score = 28.5 bits (62), Expect = 8.7,   Method: Compositional matrix adjust.
 Identities = 23/65 (35%), Positives = 31/65 (47%), Gaps = 8/65 (12%)

Query: 378 SLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFP---ELKVLHL 434
           SL  L L N +LK  P    +KL  ++ LKL  N     +L  V  G F    +LK+L L
Sbjct: 158 SLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNN-----QLKRVPEGAFDSLEKLKMLQL 212

Query: 435 KSMYW 439
           +   W
Sbjct: 213 QENPW 217


>pdb|4ASI|A Chain A, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|B Chain B, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|C Chain C, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|D Chain D, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|E Chain E, Crystal Structure Of Human Acaca C-Terminal Domain
 pdb|4ASI|F Chain F, Crystal Structure Of Human Acaca C-Terminal Domain
          Length = 769

 Score = 28.5 bits (62), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 17/72 (23%), Positives = 38/72 (52%), Gaps = 5/72 (6%)

Query: 101 ETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEFVWSPDMVEEPM 160
           E  +  ++ ++RR F++V      GT+K+  + +  D + +L  + TE      ++EE +
Sbjct: 669 ELTDGQIQAMLRRWFVEVE-----GTVKAYVWDNNKDLAEWLEKQLTEEDGVHSVIEENI 723

Query: 161 ANVKRCFILKDL 172
             + R ++LK +
Sbjct: 724 KCISRDYVLKQI 735


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.139    0.433 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,329,231
Number of Sequences: 62578
Number of extensions: 610582
Number of successful extensions: 1193
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 12
Number of HSP's that attempted gapping in prelim test: 1188
Number of HSP's gapped (non-prelim): 13
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)