Query 010381
Match_columns 512
No_of_seqs 349 out of 4288
Neff 9.9
Searched_HMMs 46136
Date Thu Mar 28 23:52:13 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010381.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010381hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG4658 Apoptotic ATPase [Sign 100.0 6.1E-52 1.3E-56 441.2 19.3 449 1-461 349-856 (889)
2 PLN03210 Resistant to P. syrin 100.0 1.9E-44 4E-49 403.9 29.1 451 1-486 382-904 (1153)
3 PLN00113 leucine-rich repeat r 100.0 4.4E-28 9.5E-33 271.6 18.1 315 161-486 69-415 (968)
4 PLN00113 leucine-rich repeat r 100.0 4.4E-28 9.5E-33 271.6 16.3 315 160-486 117-463 (968)
5 KOG0444 Cytoskeletal regulator 99.9 1.3E-29 2.9E-34 246.6 -6.9 313 161-486 55-373 (1255)
6 KOG4194 Membrane glycoprotein 99.9 7.8E-25 1.7E-29 212.2 3.9 313 161-482 102-446 (873)
7 KOG0444 Cytoskeletal regulator 99.9 2.8E-26 6E-31 223.7 -9.7 310 161-486 32-350 (1255)
8 KOG4194 Membrane glycoprotein 99.9 1.1E-24 2.4E-29 211.2 0.9 287 161-460 149-448 (873)
9 KOG0472 Leucine-rich repeat pr 99.9 1.2E-24 2.7E-29 202.1 -10.4 309 162-486 115-539 (565)
10 PLN03210 Resistant to P. syrin 99.8 1.3E-20 2.8E-25 212.2 16.6 290 181-486 530-836 (1153)
11 KOG0472 Leucine-rich repeat pr 99.8 1.3E-22 2.9E-27 188.7 -8.2 263 183-487 45-309 (565)
12 KOG0618 Serine/threonine phosp 99.8 1.4E-21 3.1E-26 199.3 -5.9 111 163-279 23-136 (1081)
13 PRK15387 E3 ubiquitin-protein 99.7 1.7E-16 3.8E-21 166.9 13.9 254 183-486 201-456 (788)
14 KOG0618 Serine/threonine phosp 99.7 1.2E-18 2.5E-23 178.2 -3.6 305 163-486 47-487 (1081)
15 PRK15370 E3 ubiquitin-protein 99.7 8.6E-17 1.9E-21 170.2 9.9 244 211-486 178-426 (754)
16 PRK15387 E3 ubiquitin-protein 99.6 4.3E-15 9.4E-20 156.5 12.8 262 163-471 203-465 (788)
17 KOG0617 Ras suppressor protein 99.6 1.3E-17 2.7E-22 138.3 -5.2 153 208-363 30-184 (264)
18 PRK15370 E3 ubiquitin-protein 99.6 1.8E-15 3.8E-20 160.3 9.0 223 212-463 200-427 (754)
19 KOG0617 Ras suppressor protein 99.6 1.8E-17 3.8E-22 137.5 -6.1 161 181-351 31-195 (264)
20 KOG4658 Apoptotic ATPase [Sign 99.6 7.7E-15 1.7E-19 157.8 10.8 294 83-391 410-731 (889)
21 PF00931 NB-ARC: NB-ARC domain 99.6 1.9E-16 4.1E-21 152.5 -2.4 92 1-96 189-283 (287)
22 cd00116 LRR_RI Leucine-rich re 99.5 6.9E-16 1.5E-20 151.1 -0.8 264 204-486 16-318 (319)
23 cd00116 LRR_RI Leucine-rich re 99.5 6.8E-15 1.5E-19 144.1 1.9 262 181-462 21-318 (319)
24 KOG4237 Extracellular matrix p 99.5 3.9E-15 8.5E-20 139.1 -0.5 267 214-486 70-357 (498)
25 KOG4237 Extracellular matrix p 99.4 1.9E-14 4.1E-19 134.6 -4.8 85 208-292 88-176 (498)
26 KOG3207 Beta-tubulin folding c 99.1 3.6E-11 7.9E-16 114.4 3.4 236 230-489 117-368 (505)
27 PF14580 LRR_9: Leucine-rich r 99.1 1.4E-10 3.1E-15 100.7 6.0 84 208-293 16-101 (175)
28 COG4886 Leucine-rich repeat (L 99.0 2.7E-10 5.8E-15 115.0 6.4 191 187-389 97-289 (394)
29 KOG0532 Leucine-rich repeat (L 99.0 1.8E-11 3.9E-16 120.0 -3.6 163 216-389 80-246 (722)
30 KOG3207 Beta-tubulin folding c 99.0 1.2E-10 2.5E-15 111.0 1.5 130 161-293 121-259 (505)
31 COG4886 Leucine-rich repeat (L 98.9 8.1E-10 1.8E-14 111.5 5.3 192 215-417 97-293 (394)
32 PF14580 LRR_9: Leucine-rich r 98.9 1.1E-09 2.4E-14 95.2 5.2 125 181-312 17-148 (175)
33 KOG1909 Ran GTPase-activating 98.9 3.5E-10 7.5E-15 105.0 0.8 244 208-463 27-310 (382)
34 KOG1909 Ran GTPase-activating 98.9 4.6E-10 1E-14 104.2 1.3 237 181-438 28-309 (382)
35 KOG0532 Leucine-rich repeat (L 98.9 5.7E-11 1.2E-15 116.5 -4.9 170 183-364 75-246 (722)
36 KOG1259 Nischarin, modulator o 98.8 6.4E-10 1.4E-14 101.0 0.7 126 257-437 284-409 (490)
37 KOG1259 Nischarin, modulator o 98.8 8.6E-10 1.9E-14 100.2 1.0 133 319-463 277-411 (490)
38 KOG2120 SCF ubiquitin ligase, 98.8 8.3E-11 1.8E-15 106.6 -6.6 182 258-463 186-375 (419)
39 KOG4341 F-box protein containi 98.8 2.8E-10 6.1E-15 107.8 -4.5 85 181-267 162-252 (483)
40 KOG4341 F-box protein containi 98.7 5.6E-10 1.2E-14 105.9 -4.4 107 183-291 138-253 (483)
41 KOG2120 SCF ubiquitin ligase, 98.7 3.6E-10 7.9E-15 102.5 -6.9 181 212-438 186-374 (419)
42 PLN03150 hypothetical protein; 98.6 8.2E-08 1.8E-12 101.7 8.4 101 212-312 419-523 (623)
43 KOG0531 Protein phosphatase 1, 98.6 7.7E-09 1.7E-13 104.6 -0.8 240 211-465 72-319 (414)
44 PF13855 LRR_8: Leucine rich r 98.5 1.5E-07 3.2E-12 67.1 3.6 56 212-267 2-59 (61)
45 KOG2982 Uncharacterized conser 98.4 1.2E-07 2.7E-12 86.3 2.8 226 186-433 48-285 (418)
46 KOG2982 Uncharacterized conser 98.4 3.3E-08 7.1E-13 90.0 -1.4 202 256-483 70-287 (418)
47 PF13855 LRR_8: Leucine rich r 98.4 4E-07 8.6E-12 64.9 4.5 59 234-292 1-61 (61)
48 PLN03150 hypothetical protein; 98.4 9.1E-07 2E-11 93.9 8.9 106 184-294 419-529 (623)
49 KOG0531 Protein phosphatase 1, 98.4 6.8E-08 1.5E-12 97.8 -0.5 105 181-293 93-199 (414)
50 PF12799 LRR_4: Leucine Rich r 98.1 2.7E-06 5.9E-11 55.6 3.7 38 235-272 2-39 (44)
51 KOG1859 Leucine-rich repeat pr 98.1 7.3E-08 1.6E-12 97.7 -7.1 126 235-389 165-291 (1096)
52 PF12799 LRR_4: Leucine Rich r 98.1 3.7E-06 8.1E-11 54.9 3.0 40 211-250 1-40 (44)
53 PRK15386 type III secretion pr 98.0 1.6E-05 3.4E-10 77.9 8.2 76 204-291 46-123 (426)
54 KOG3665 ZYG-1-like serine/thre 98.0 5.2E-06 1.1E-10 88.1 5.3 130 161-294 122-264 (699)
55 KOG3665 ZYG-1-like serine/thre 98.0 4.3E-06 9.3E-11 88.7 4.1 107 182-291 121-231 (699)
56 KOG1859 Leucine-rich repeat pr 97.9 2.4E-07 5.1E-12 94.1 -6.6 87 320-413 203-291 (1096)
57 PRK15386 type III secretion pr 97.9 6.3E-05 1.4E-09 73.8 9.0 57 230-291 48-105 (426)
58 COG5238 RNA1 Ran GTPase-activa 97.7 6.1E-05 1.3E-09 68.3 6.1 86 377-462 214-314 (388)
59 KOG4579 Leucine-rich repeat (L 97.7 8.6E-06 1.9E-10 66.0 0.2 71 204-274 70-140 (177)
60 KOG4579 Leucine-rich repeat (L 97.6 2.2E-05 4.8E-10 63.7 0.6 85 208-292 50-135 (177)
61 KOG1947 Leucine rich repeat pr 97.4 1.7E-05 3.6E-10 82.3 -2.4 236 208-486 185-438 (482)
62 COG5238 RNA1 Ran GTPase-activa 97.4 0.00015 3.2E-09 65.9 3.9 246 204-486 24-314 (388)
63 KOG1644 U2-associated snRNP A' 97.4 0.00038 8.3E-09 60.5 5.9 128 354-488 21-153 (233)
64 KOG1644 U2-associated snRNP A' 97.2 0.00046 9.9E-09 60.1 5.0 59 377-436 64-122 (233)
65 KOG2123 Uncharacterized conser 97.1 6.6E-05 1.4E-09 68.3 -1.7 99 181-286 17-123 (388)
66 KOG1947 Leucine rich repeat pr 96.8 0.0001 2.2E-09 76.5 -4.1 217 232-492 186-418 (482)
67 KOG2739 Leucine-rich acidic nu 96.7 0.00083 1.8E-08 61.0 1.8 81 208-288 62-151 (260)
68 KOG2123 Uncharacterized conser 96.5 0.00016 3.4E-09 65.9 -4.1 85 208-294 16-102 (388)
69 KOG2739 Leucine-rich acidic nu 96.2 0.0034 7.4E-08 57.1 2.6 85 208-293 40-129 (260)
70 PF00560 LRR_1: Leucine Rich R 95.7 0.0047 1E-07 33.5 0.9 16 236-251 2-17 (22)
71 PF00560 LRR_1: Leucine Rich R 95.5 0.006 1.3E-07 33.1 0.8 21 258-278 1-21 (22)
72 KOG0473 Leucine-rich repeat pr 94.7 0.0015 3.3E-08 58.1 -4.5 89 204-293 36-124 (326)
73 KOG3864 Uncharacterized conser 94.3 0.002 4.4E-08 56.2 -4.7 85 378-463 102-188 (221)
74 KOG3864 Uncharacterized conser 94.1 0.004 8.6E-08 54.4 -3.3 82 403-486 103-187 (221)
75 PF13306 LRR_5: Leucine rich r 94.0 0.15 3.3E-06 41.9 6.2 78 208-288 9-89 (129)
76 PF13306 LRR_5: Leucine rich r 93.6 0.21 4.6E-06 41.0 6.3 102 229-334 7-111 (129)
77 PF13504 LRR_7: Leucine rich r 93.6 0.044 9.6E-07 27.5 1.3 13 236-248 3-15 (17)
78 PF13504 LRR_7: Leucine rich r 93.6 0.05 1.1E-06 27.3 1.4 16 258-273 2-17 (17)
79 KOG0473 Leucine-rich repeat pr 90.0 0.017 3.8E-07 51.6 -4.4 89 225-314 32-121 (326)
80 smart00369 LRR_TYP Leucine-ric 89.7 0.33 7.3E-06 27.2 2.2 19 257-275 2-20 (26)
81 smart00370 LRR Leucine-rich re 89.7 0.33 7.3E-06 27.2 2.2 19 257-275 2-20 (26)
82 smart00370 LRR Leucine-rich re 88.6 0.36 7.9E-06 27.1 1.8 21 233-253 1-21 (26)
83 smart00369 LRR_TYP Leucine-ric 88.6 0.36 7.9E-06 27.1 1.8 21 233-253 1-21 (26)
84 KOG4308 LRR-containing protein 86.5 0.01 2.2E-07 60.7 -9.5 164 322-487 257-444 (478)
85 KOG4308 LRR-containing protein 84.1 0.023 5.1E-07 58.1 -8.2 48 316-363 280-329 (478)
86 smart00367 LRR_CC Leucine-rich 74.8 1.7 3.7E-05 24.3 1.1 16 450-465 1-16 (26)
87 PF13516 LRR_6: Leucine Rich r 71.6 1.3 2.8E-05 24.2 0.0 11 235-245 3-13 (24)
88 smart00364 LRR_BAC Leucine-ric 71.3 2.5 5.4E-05 23.8 1.1 17 235-251 3-19 (26)
89 PRK04841 transcriptional regul 69.0 16 0.00035 41.3 8.1 118 2-144 213-332 (903)
90 smart00365 LRR_SD22 Leucine-ri 63.0 6.1 0.00013 22.3 1.6 14 353-366 3-16 (26)
91 KOG3763 mRNA export factor TAP 57.1 3.5 7.5E-05 42.1 -0.0 65 374-441 216-284 (585)
92 PF14162 YozD: YozD-like prote 47.9 30 0.00066 22.9 3.2 28 90-117 22-51 (57)
93 smart00368 LRR_RI Leucine rich 43.2 17 0.00037 20.7 1.4 13 235-247 3-15 (28)
94 PF12802 MarR_2: MarR family; 30.1 1.8E+02 0.0039 19.7 6.3 59 59-125 2-60 (62)
95 KOG3763 mRNA export factor TAP 24.9 43 0.00094 34.6 1.7 65 349-414 215-283 (585)
96 PF13730 HTH_36: Helix-turn-he 23.8 2.2E+02 0.0049 18.8 4.7 51 59-116 2-55 (55)
97 PF04433 SWIRM: SWIRM domain; 20.3 81 0.0018 23.7 2.1 38 55-92 10-49 (86)
No 1
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=100.00 E-value=6.1e-52 Score=441.23 Aligned_cols=449 Identities=25% Similarity=0.353 Sum_probs=312.4
Q ss_pred CCCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCC-ccccCCCCHHHHHhhhcccCCCCcchhhHhhhhcccCCCc
Q 010381 1 MENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPL-ENYLQGETIPTILSRICSVLELPFHLKICCIYLCVFPPSI 78 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~-~~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a~fp~~~ 78 (512)
|++|+|+|||++|+|+.|+ |.++++|+++.+.+.+... +..-.++.++++|+ +|||+||+++|.||+|||+||+||
T Consensus 349 ~~kC~GLPLAl~viG~~ma~K~t~~eW~~~~~~l~s~~~~~~~~~~~~i~~iLk--lSyd~L~~~lK~CFLycalFPED~ 426 (889)
T KOG4658|consen 349 AEKCGGLPLALNVLGGLLACKKTVQEWRRALNVLKSSLAADFSGMEESILPILK--LSYDNLPEELKSCFLYCALFPEDY 426 (889)
T ss_pred HHHhCChHHHHHHHHHHhcCCCcHHHHHHHHccccccccCCCCchhhhhHHhhh--ccHhhhhHHHHHHHHhhccCCccc
Confidence 5899999999999999999 9999999999999988743 22111278999999 999999988999999999999999
Q ss_pred eeCHHHHHHHHHHcCCCC-----CChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHhhh-----hcC
Q 010381 79 EISTRQLYQLWEAEGFIP-----YNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAE-----KTE 148 (512)
Q Consensus 79 ~i~~~~Li~~w~~~g~~~-----~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~~~-----~~~ 148 (512)
.|++++|+.+|+|+||+. +++++.|+.|+++|++++++...... ++...|+|||+||++|.++|. .++
T Consensus 427 ~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~--~~~~~~kmHDvvRe~al~ias~~~~~~e~ 504 (889)
T KOG4658|consen 427 EIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDE--GRKETVKMHDVVREMALWIASDFGKQEEN 504 (889)
T ss_pred ccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccc--cceeEEEeeHHHHHHHHHHhccccccccc
Confidence 999999999999999997 68899999999999999999988754 566899999999999999998 566
Q ss_pred ceecCC-CC-----CCCCCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCC
Q 010381 149 FVWSPD-MV-----EEPMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSA 221 (512)
Q Consensus 149 ~~~~~~-~~-----~~~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~ 221 (512)
++.... +. ...+..+|++++..+.....+....+++|++|.+.++... ...+ .+||..++.||+||+++|
T Consensus 505 ~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~~~~~~~~~~L~tLll~~n~~~---l~~is~~ff~~m~~LrVLDLs~~ 581 (889)
T KOG4658|consen 505 QIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEHIAGSSENPKLRTLLLQRNSDW---LLEISGEFFRSLPLLRVLDLSGN 581 (889)
T ss_pred eEEECCcCccccccccchhheeEEEEeccchhhccCCCCCCccceEEEeecchh---hhhcCHHHHhhCcceEEEECCCC
Confidence 544433 11 3455789999999666666444448889999999998630 1144 677799999999999987
Q ss_pred c-CCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccC--CCCC
Q 010381 222 V-LDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLP--APPT 297 (512)
Q Consensus 222 ~-l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~--~~~p 297 (512)
. +..+|+.++.+.+||||+++++.++.+|.++++|..|.+|++..+ .+..+|.....+.+|++|.+...... ...-
T Consensus 582 ~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~Lr~L~l~~s~~~~~~~~l 661 (889)
T KOG4658|consen 582 SSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQSLRVLRLPRSALSNDKLLL 661 (889)
T ss_pred CccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhcccccEEEeeccccccchhhH
Confidence 6 779999999999999999999999999999999999999999998 66666666667999999988655421 1222
Q ss_pred CCCCCCCCCCeeecCCCCccCchhcCCCCCCCe----EEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC--------
Q 010381 298 NYSSSLKNLIFVSALHPISCTPDILGRLPNIQT----LRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP-------- 365 (512)
Q Consensus 298 ~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~----L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p-------- 365 (512)
..+.++++|+.+............+..+++|++ +.+.++ .....+.++..+.+|+.|.+.+..++
T Consensus 662 ~el~~Le~L~~ls~~~~s~~~~e~l~~~~~L~~~~~~l~~~~~---~~~~~~~~~~~l~~L~~L~i~~~~~~e~~~~~~~ 738 (889)
T KOG4658|consen 662 KELENLEHLENLSITISSVLLLEDLLGMTRLRSLLQSLSIEGC---SKRTLISSLGSLGNLEELSILDCGISEIVIEWEE 738 (889)
T ss_pred HhhhcccchhhheeecchhHhHhhhhhhHHHHHHhHhhhhccc---ccceeecccccccCcceEEEEcCCCchhhccccc
Confidence 334555555555554310111112222222221 111111 22233334444445555544442221
Q ss_pred --------------------CCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCC
Q 010381 366 --------------------SRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGG 425 (512)
Q Consensus 366 --------------------~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~ 425 (512)
.++.+....+|++|+.|.+.+|...+++++....+..+..+.+..+.+.+...... .++
T Consensus 739 ~~~~~~~f~~l~~~~~~~~~~~r~l~~~~f~~~L~~l~l~~~~~~e~~i~~~k~~~~l~~~i~~f~~~~~l~~~~~-l~~ 817 (889)
T KOG4658|consen 739 SLIVLLCFPNLSKVSILNCHMLRDLTWLLFAPHLTSLSLVSCRLLEDIIPKLKALLELKELILPFNKLEGLRMLCS-LGG 817 (889)
T ss_pred ccchhhhHHHHHHHHhhccccccccchhhccCcccEEEEecccccccCCCHHHHhhhcccEEecccccccceeeec-CCC
Confidence 01111112344777777777777666666665556666655555444444422222 455
Q ss_pred CccccEEEecCCCCcceeeeCC----CCccccceeeecCC
Q 010381 426 FPELKVLHLKSMYWLDEWTMGA----GAMPKLESLIVDPC 461 (512)
Q Consensus 426 ~~~L~~L~L~~~~~l~~l~~~~----~~l~~L~~L~l~~c 461 (512)
|+++..+.+.+ ..+..+.... +.+|.+..+.+.+|
T Consensus 818 l~~i~~~~l~~-~~l~~~~ve~~p~l~~~P~~~~~~i~~~ 856 (889)
T KOG4658|consen 818 LPQLYWLPLSF-LKLEELIVEECPKLGKLPLLSTLTIVGC 856 (889)
T ss_pred CceeEecccCc-cchhheehhcCcccccCccccccceecc
Confidence 55555555554 2244333222 44444444455443
No 2
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=100.00 E-value=1.9e-44 Score=403.86 Aligned_cols=451 Identities=17% Similarity=0.135 Sum_probs=323.1
Q ss_pred CCCCCCchhHHHHhhhcccCCCHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCc-chhhHhhhhcccCCCce
Q 010381 1 MENGEKIRLDSVLIGGPLIRLKHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPF-HLKICCIYLCVFPPSIE 79 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~-~~k~cfl~~a~fp~~~~ 79 (512)
|++|+|+||||+++|+.|+..+.++|+++++++.+.+. .+|+++|+ +||++|++ ..|.||+||||||.++.
T Consensus 382 v~~c~GLPLAl~vlgs~L~~k~~~~W~~~l~~L~~~~~------~~I~~~L~--~SYd~L~~~~~k~~Fl~ia~ff~~~~ 453 (1153)
T PLN03210 382 ALRAGNLPLGLNVLGSYLRGRDKEDWMDMLPRLRNGLD------GKIEKTLR--VSYDGLNNKKDKAIFRHIACLFNGEK 453 (1153)
T ss_pred HHHhCCCcHHHHHHHHHHcCCCHHHHHHHHHHHHhCcc------HHHHHHHH--HhhhccCccchhhhhheehhhcCCCC
Confidence 57899999999999999994468999999999988765 78999999 99999987 49999999999999976
Q ss_pred eCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHhhhhcCc-------eec
Q 010381 80 ISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKTEF-------VWS 152 (512)
Q Consensus 80 i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~~~~~~~-------~~~ 152 (512)
+ + .+..|++.+.+. ++..++.|+++++|+... ..++|||++|+|++++++++.. ...
T Consensus 454 ~--~-~v~~~l~~~~~~------~~~~l~~L~~ksLi~~~~-------~~~~MHdLl~~~~r~i~~~~~~~~~~r~~l~~ 517 (1153)
T PLN03210 454 V--N-DIKLLLANSDLD------VNIGLKNLVDKSLIHVRE-------DIVEMHSLLQEMGKEIVRAQSNEPGEREFLVD 517 (1153)
T ss_pred H--H-HHHHHHHhcCCC------chhChHHHHhcCCEEEcC-------CeEEhhhHHHHHHHHHHHhhcCCCCcceeEeC
Confidence 4 3 356677765552 445699999999998754 3589999999999999987641 100
Q ss_pred CCCC------CCCCCceeEEEEEecCCcccc--CCC--CCCCeeEEEEecCCcchh--hhcch-hHHhcCCCeeEEEEec
Q 010381 153 PDMV------EEPMANVKRCFILKDLIDFFP--SEY--SDMYLQSFLNHSSESDRL--ARIDC-ENFCKKFKYLRVLDLG 219 (512)
Q Consensus 153 ~~~~------~~~~~~~r~l~l~~~~~~~~~--~~~--~~~~Lr~L~l~~~~~~~~--~~~~~-~~~~~~~~~L~~L~l~ 219 (512)
..+. .....+++.+++......... ... .+++|+.|.++.+..... ....+ ..+..-.++||.|.+.
T Consensus 518 ~~di~~vl~~~~g~~~v~~i~l~~~~~~~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~ 597 (1153)
T PLN03210 518 AKDICDVLEDNTGTKKVLGITLDIDEIDELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWD 597 (1153)
T ss_pred HHHHHHHHHhCcccceeeEEEeccCccceeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEec
Confidence 0000 234467788877644333221 122 799999999976542110 11233 4442223568888888
Q ss_pred CCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccCCCCCC
Q 010381 220 SAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLPAPPTN 298 (512)
Q Consensus 220 ~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~ 298 (512)
++.++.+|..+ ...+|+.|++.++.+..+|..+..+++|+.|+|+++ .++.+|. ++.+++|++|++++|.....+|.
T Consensus 598 ~~~l~~lP~~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip~-ls~l~~Le~L~L~~c~~L~~lp~ 675 (1153)
T PLN03210 598 KYPLRCMPSNF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIPD-LSMATNLETLKLSDCSSLVELPS 675 (1153)
T ss_pred CCCCCCCCCcC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCCc-cccCCcccEEEecCCCCccccch
Confidence 88888888776 467888888888888888888888888888888887 6677774 77788888888888877778888
Q ss_pred CCCCCCCCCeeecCC--CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---C------CC
Q 010381 299 YSSSLKNLIFVSALH--PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK---P------SR 367 (512)
Q Consensus 299 ~~~~l~~L~~l~l~~--~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~---p------~L 367 (512)
.++++++|+.|++++ .+..+|..+ ++++|+.|++++| .....+|.. ..+|+.|++++|.+ | +|
T Consensus 676 si~~L~~L~~L~L~~c~~L~~Lp~~i-~l~sL~~L~Lsgc--~~L~~~p~~---~~nL~~L~L~~n~i~~lP~~~~l~~L 749 (1153)
T PLN03210 676 SIQYLNKLEDLDMSRCENLEILPTGI-NLKSLYRLNLSGC--SRLKSFPDI---STNISWLDLDETAIEEFPSNLRLENL 749 (1153)
T ss_pred hhhccCCCCEEeCCCCCCcCccCCcC-CCCCCCEEeCCCC--CCccccccc---cCCcCeeecCCCcccccccccccccc
Confidence 888888888888875 334455444 6788888888887 334444422 34566666666532 2 22
Q ss_pred cccCcC-------------------CCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCcc
Q 010381 368 MVLSEY-------------------QFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPE 428 (512)
Q Consensus 368 ~~l~~~-------------------~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (512)
..|.+. ..|++|+.|++++|......|..++++++|+.|++++|...+..+.. ..+++
T Consensus 750 ~~L~l~~~~~~~l~~~~~~l~~~~~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~---~~L~s 826 (1153)
T PLN03210 750 DELILCEMKSEKLWERVQPLTPLMTMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTG---INLES 826 (1153)
T ss_pred ccccccccchhhccccccccchhhhhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCC---CCccc
Confidence 222111 12357778888877666667777778888888888776544433321 24555
Q ss_pred ccEEEecCCCC--------------------cceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYW--------------------LDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~--------------------l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|+.|++++|.. ++.+|..+..+++|+.|++++|+.++.+|..+..+++|+.+++++|+
T Consensus 827 L~~L~Ls~c~~L~~~p~~~~nL~~L~Ls~n~i~~iP~si~~l~~L~~L~L~~C~~L~~l~~~~~~L~~L~~L~l~~C~ 904 (1153)
T PLN03210 827 LESLDLSGCSRLRTFPDISTNISDLNLSRTGIEEVPWWIEKFSNLSFLDMNGCNNLQRVSLNISKLKHLETVDFSDCG 904 (1153)
T ss_pred cCEEECCCCCccccccccccccCEeECCCCCCccChHHHhcCCCCCEEECCCCCCcCccCcccccccCCCeeecCCCc
Confidence 55555555544 44556566778999999999999999999988899999999999997
No 3
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.4e-28 Score=271.65 Aligned_cols=315 Identities=21% Similarity=0.231 Sum_probs=170.7
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L 236 (512)
.+++.+.+..+......+.. .+++|+.|++++|.+.. .+ ..++..+++||+|++++|.++ .+|. +.+++|
T Consensus 69 ~~v~~L~L~~~~i~~~~~~~~~~l~~L~~L~Ls~n~~~~----~ip~~~~~~l~~L~~L~Ls~n~l~~~~p~--~~l~~L 142 (968)
T PLN00113 69 SRVVSIDLSGKNISGKISSAIFRLPYIQTINLSNNQLSG----PIPDDIFTTSSSLRYLNLSNNNFTGSIPR--GSIPNL 142 (968)
T ss_pred CcEEEEEecCCCccccCChHHhCCCCCCEEECCCCccCC----cCChHHhccCCCCCEEECcCCccccccCc--cccCCC
Confidence 35666666644433323222 66667777766665532 33 344456666666666666554 3332 335555
Q ss_pred CeeeecCCCCc-ccChhhhcCcCCcEEecCCccc-cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-
Q 010381 237 KYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYI-DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH- 313 (512)
Q Consensus 237 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~- 313 (512)
++|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.|++++
T Consensus 143 ~~L~Ls~n~~~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n 222 (968)
T PLN00113 143 ETLDLSNNMLSGEIPNDIGSFSSLKVLDLGGNVLVGKIPNSLTNLTSLEFLTLASNQLVGQIPRELGQMKSLKWIYLGYN 222 (968)
T ss_pred CEEECcCCcccccCChHHhcCCCCCEEECccCcccccCChhhhhCcCCCeeeccCCCCcCcCChHHcCcCCccEEECcCC
Confidence 55555555554 4555555555555555555533 34555555555555555555555555555555555555555543
Q ss_pred CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC----CC-------Cccc-----------
Q 010381 314 PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK----PS-------RMVL----------- 370 (512)
Q Consensus 314 ~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~----p~-------L~~l----------- 370 (512)
.+ +..|..++.+++|++|++++| .....+|..++++++|+.|++++|.+ |. |+.|
T Consensus 223 ~l~~~~p~~l~~l~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~ 300 (968)
T PLN00113 223 NLSGEIPYEIGGLTSLNHLDLVYN--NLTGPIPSSLGNLKNLQYLFLYQNKLSGPIPPSIFSLQKLISLDLSDNSLSGEI 300 (968)
T ss_pred ccCCcCChhHhcCCCCCEEECcCc--eeccccChhHhCCCCCCEEECcCCeeeccCchhHhhccCcCEEECcCCeeccCC
Confidence 11 234445555555555555555 23344455555555555555555422 22 0000
Q ss_pred --CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCC
Q 010381 371 --SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAG 448 (512)
Q Consensus 371 --~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 448 (512)
++..+ ++|+.|++++|.+.+..|..+..+++|+.|++++|.+.+..+.. ++.+++|+.|++++|.....+|..+.
T Consensus 301 p~~~~~l-~~L~~L~l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~p~~--l~~~~~L~~L~Ls~n~l~~~~p~~~~ 377 (968)
T PLN00113 301 PELVIQL-QNLEILHLFSNNFTGKIPVALTSLPRLQVLQLWSNKFSGEIPKN--LGKHNNLTVLDLSTNNLTGEIPEGLC 377 (968)
T ss_pred ChhHcCC-CCCcEEECCCCccCCcCChhHhcCCCCCEEECcCCCCcCcCChH--HhCCCCCcEEECCCCeeEeeCChhHh
Confidence 33444 55555555555555555555555555666666555554443332 34555666666665443334555555
Q ss_pred CccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 449 AMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 378 ~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~ 415 (968)
T PLN00113 378 SSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNS 415 (968)
T ss_pred CcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCE
Confidence 56666666666666555666667777777777777775
No 4
>PLN00113 leucine-rich repeat receptor-like protein kinase; Provisional
Probab=99.95 E-value=4.4e-28 Score=271.62 Aligned_cols=315 Identities=21% Similarity=0.265 Sum_probs=207.7
Q ss_pred CCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCccccC
Q 010381 160 MANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLFLLK 237 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L~ 237 (512)
...+|++.+..+......+...+++|++|++++|.... .+ ..+ ..+++|++|++++|.+. .+|..++++++|+
T Consensus 117 l~~L~~L~Ls~n~l~~~~p~~~l~~L~~L~Ls~n~~~~----~~p~~~-~~l~~L~~L~L~~n~l~~~~p~~~~~l~~L~ 191 (968)
T PLN00113 117 SSSLRYLNLSNNNFTGSIPRGSIPNLETLDLSNNMLSG----EIPNDI-GSFSSLKVLDLGGNVLVGKIPNSLTNLTSLE 191 (968)
T ss_pred CCCCCEEECcCCccccccCccccCCCCEEECcCCcccc----cCChHH-hcCCCCCEEECccCcccccCChhhhhCcCCC
Confidence 35666777664444332222356777777777776542 33 344 77888888888888766 6777788888888
Q ss_pred eeeecCCCCc-ccChhhhcCcCCcEEecCCccc-cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-
Q 010381 238 YLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYI-DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP- 314 (512)
Q Consensus 238 ~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~-~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~- 314 (512)
+|++++|.+. .+|..++++++|++|++++|.+ ..+|..++++++|++|++++|.+.+.+|..++++++|+.|++.++
T Consensus 192 ~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~L~~n~ 271 (968)
T PLN00113 192 FLTLASNQLVGQIPRELGQMKSLKWIYLGYNNLSGEIPYEIGGLTSLNHLDLVYNNLTGPIPSSLGNLKNLQYLFLYQNK 271 (968)
T ss_pred eeeccCCCCcCcCChHHcCcCCccEEECcCCccCCcCChhHhcCCCCCEEECcCceeccccChhHhCCCCCCEEECcCCe
Confidence 8888888776 6777788888888888888855 367777888888888888888877777878888888888887751
Q ss_pred C-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC----CCCcccCcCCCCCCccEEEEecccC
Q 010381 315 I-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK----PSRMVLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 315 ~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~----p~L~~l~~~~lp~~L~~L~L~~~~~ 389 (512)
+ +..|..+..+++|+.|++++| .....+|..+.++++|+.|++++|.+ |. ++..+ ++|+.|++++|.+
T Consensus 272 l~~~~p~~l~~l~~L~~L~Ls~n--~l~~~~p~~~~~l~~L~~L~l~~n~~~~~~~~----~~~~l-~~L~~L~L~~n~l 344 (968)
T PLN00113 272 LSGPIPPSIFSLQKLISLDLSDN--SLSGEIPELVIQLQNLEILHLFSNNFTGKIPV----ALTSL-PRLQVLQLWSNKF 344 (968)
T ss_pred eeccCchhHhhccCcCEEECcCC--eeccCCChhHcCCCCCcEEECCCCccCCcCCh----hHhcC-CCCCEEECcCCCC
Confidence 1 345667777788888888777 45556677777778888888877644 33 45566 7777777777777
Q ss_pred CCCCCCCCCCCcccceeEEEcccccCceeeee----------------------CCCCCccccEEEecCCCCcceeeeCC
Q 010381 390 KEDPMPTLEKLPYVQVLKLKQNSYLGRKLACV----------------------GSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 390 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~----------------------~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
.+..|..++.+++|+.|++++|.+.+..+... .++.+++|+.|++++|.....+|..+
T Consensus 345 ~~~~p~~l~~~~~L~~L~Ls~n~l~~~~p~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~L~~L~L~~n~l~~~~p~~~ 424 (968)
T PLN00113 345 SGEIPKNLGKHNNLTVLDLSTNNLTGEIPEGLCSSGNLFKLILFSNSLEGEIPKSLGACRSLRRVRLQDNSFSGELPSEF 424 (968)
T ss_pred cCcCChHHhCCCCCcEEECCCCeeEeeCChhHhCcCCCCEEECcCCEecccCCHHHhCCCCCCEEECcCCEeeeECChhH
Confidence 66666667777777777777666554333221 02334455555555543333444445
Q ss_pred CCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..+++|+.|++++|.....+|..+..+++|+.|++++|.
T Consensus 425 ~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~ 463 (968)
T PLN00113 425 TKLPLVYFLDISNNNLQGRINSRKWDMPSLQMLSLARNK 463 (968)
T ss_pred hcCCCCCEEECcCCcccCccChhhccCCCCcEEECcCce
Confidence 555555555555555444455555556666666666654
No 5
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.94 E-value=1.3e-29 Score=246.64 Aligned_cols=313 Identities=21% Similarity=0.247 Sum_probs=274.4
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
.++.|+++..+....+.-+. .+|.||++.+..|... +..+ +++ .++..|.+|||+.|.+++.|..+.+-+++-.
T Consensus 55 qkLEHLs~~HN~L~~vhGELs~Lp~LRsv~~R~N~LK---nsGiP~di-F~l~dLt~lDLShNqL~EvP~~LE~AKn~iV 130 (1255)
T KOG0444|consen 55 QKLEHLSMAHNQLISVHGELSDLPRLRSVIVRDNNLK---NSGIPTDI-FRLKDLTILDLSHNQLREVPTNLEYAKNSIV 130 (1255)
T ss_pred hhhhhhhhhhhhhHhhhhhhccchhhHHHhhhccccc---cCCCCchh-cccccceeeecchhhhhhcchhhhhhcCcEE
Confidence 56788888877777666666 8999999999998875 3466 777 8999999999999999999999999999999
Q ss_pred eeecCCCCcccChhh-hcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC---C
Q 010381 239 LKLNIPSLKCLPSQL-CTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH---P 314 (512)
Q Consensus 239 L~l~~~~i~~lp~~~-~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~---~ 314 (512)
|+|++|+|..+|..+ .+|.-|-.|||++|.+..+|+.+..+.+|++|++++|.+...-...+..|++|+.|.+++ +
T Consensus 131 LNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe~LPPQ~RRL~~LqtL~Ls~NPL~hfQLrQLPsmtsL~vLhms~TqRT 210 (1255)
T KOG0444|consen 131 LNLSYNNIETIPNSLFINLTDLLFLDLSNNRLEMLPPQIRRLSMLQTLKLSNNPLNHFQLRQLPSMTSLSVLHMSNTQRT 210 (1255)
T ss_pred EEcccCccccCCchHHHhhHhHhhhccccchhhhcCHHHHHHhhhhhhhcCCChhhHHHHhcCccchhhhhhhcccccch
Confidence 999999999999885 489999999999999999999999999999999999998765556677889999999986 3
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
...+|..+..+.||+.++++.+ ....+|..+.++.+|+.|+|++|.+..|.- ..+.- .+|++|+++.|+++ ..|
T Consensus 211 l~N~Ptsld~l~NL~dvDlS~N---~Lp~vPecly~l~~LrrLNLS~N~iteL~~-~~~~W-~~lEtLNlSrNQLt-~LP 284 (1255)
T KOG0444|consen 211 LDNIPTSLDDLHNLRDVDLSEN---NLPIVPECLYKLRNLRRLNLSGNKITELNM-TEGEW-ENLETLNLSRNQLT-VLP 284 (1255)
T ss_pred hhcCCCchhhhhhhhhcccccc---CCCcchHHHhhhhhhheeccCcCceeeeec-cHHHH-hhhhhhccccchhc-cch
Confidence 4678899999999999999998 778899999999999999999998865431 12233 89999999999986 688
Q ss_pred CCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCC
Q 010381 395 PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCI 474 (512)
Q Consensus 395 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 474 (512)
+.+..++.|+.|.+.+|.+.-+.++.. ++.+.+|+++...+ +.++-+|.++..|++|+.|.++.|. +..+|.++.-+
T Consensus 285 ~avcKL~kL~kLy~n~NkL~FeGiPSG-IGKL~~Levf~aan-N~LElVPEglcRC~kL~kL~L~~Nr-LiTLPeaIHlL 361 (1255)
T KOG0444|consen 285 DAVCKLTKLTKLYANNNKLTFEGIPSG-IGKLIQLEVFHAAN-NKLELVPEGLCRCVKLQKLKLDHNR-LITLPEAIHLL 361 (1255)
T ss_pred HHHhhhHHHHHHHhccCcccccCCccc-hhhhhhhHHHHhhc-cccccCchhhhhhHHHHHhcccccc-eeechhhhhhc
Confidence 899999999999999999876666665 88999999999998 6899999999999999999999887 66789999999
Q ss_pred CCCcEEEccCCh
Q 010381 475 QSLRKLDLHWPQ 486 (512)
Q Consensus 475 ~~L~~L~l~~~~ 486 (512)
+.|+.|++..||
T Consensus 362 ~~l~vLDlreNp 373 (1255)
T KOG0444|consen 362 PDLKVLDLRENP 373 (1255)
T ss_pred CCcceeeccCCc
Confidence 999999999997
No 6
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.90 E-value=7.8e-25 Score=212.18 Aligned_cols=313 Identities=20% Similarity=0.176 Sum_probs=154.8
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccC-ccccCccccCe
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKY 238 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~ 238 (512)
..++.+.+..+....+|.-. ...+++.|.+.+|.+..... +++ .-++.||+|||+.|.|+.+| ..|..-.++++
T Consensus 102 ~nLq~v~l~~N~Lt~IP~f~~~sghl~~L~L~~N~I~sv~s---e~L-~~l~alrslDLSrN~is~i~~~sfp~~~ni~~ 177 (873)
T KOG4194|consen 102 PNLQEVNLNKNELTRIPRFGHESGHLEKLDLRHNLISSVTS---EEL-SALPALRSLDLSRNLISEIPKPSFPAKVNIKK 177 (873)
T ss_pred CcceeeeeccchhhhcccccccccceeEEeeeccccccccH---HHH-HhHhhhhhhhhhhchhhcccCCCCCCCCCceE
Confidence 44555555544444444433 55556666666666552111 444 55566667777766666554 23444456667
Q ss_pred eeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhh-hccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CC
Q 010381 239 LKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDI-WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PI 315 (512)
Q Consensus 239 L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~ 315 (512)
|+|++|.|+.+- ..+..+.+|-+|.|+.|.++.+|... .+|++|+.|+|..|.+...---.|..|.+|+.+.+.. .+
T Consensus 178 L~La~N~It~l~~~~F~~lnsL~tlkLsrNrittLp~r~Fk~L~~L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I 257 (873)
T KOG4194|consen 178 LNLASNRITTLETGHFDSLNSLLTLKLSRNRITTLPQRSFKRLPKLESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDI 257 (873)
T ss_pred EeeccccccccccccccccchheeeecccCcccccCHHHhhhcchhhhhhccccceeeehhhhhcCchhhhhhhhhhcCc
Confidence 777766666432 23556666666666666666666543 3466666666666665321122344444444444432 11
Q ss_pred cc-------------------------CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 316 SC-------------------------TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 316 ~~-------------------------~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
.. ...++..++.|+.|+++.+ ...+.-+.....+++|+.|+|+.|.+..+..=
T Consensus 258 ~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~N--aI~rih~d~WsftqkL~~LdLs~N~i~~l~~~ 335 (873)
T KOG4194|consen 258 SKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSYN--AIQRIHIDSWSFTQKLKELDLSSNRITRLDEG 335 (873)
T ss_pred ccccCcceeeecccceeecccchhhhhhcccccccchhhhhccchh--hhheeecchhhhcccceeEeccccccccCChh
Confidence 11 1123344444444454444 23333334444444555555555444332222
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeee-CCCCCccccEEEecCCCCcceee-eCCC
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACV-GSGGFPELKVLHLKSMYWLDEWT-MGAG 448 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~~l~-~~~~ 448 (512)
.+..+ ..|++|.|++|++....-..|..+.+|++|+|++|.+...+.... .+.++++|+.|.+.+ +.++.+| ..+.
T Consensus 336 sf~~L-~~Le~LnLs~Nsi~~l~e~af~~lssL~~LdLr~N~ls~~IEDaa~~f~gl~~LrkL~l~g-Nqlk~I~krAfs 413 (873)
T KOG4194|consen 336 SFRVL-SQLEELNLSHNSIDHLAEGAFVGLSSLHKLDLRSNELSWCIEDAAVAFNGLPSLRKLRLTG-NQLKSIPKRAFS 413 (873)
T ss_pred HHHHH-HHhhhhcccccchHHHHhhHHHHhhhhhhhcCcCCeEEEEEecchhhhccchhhhheeecC-ceeeecchhhhc
Confidence 33334 445555555554433222334445555555555554433222110 134455556666555 4455554 3445
Q ss_pred CccccceeeecCCcccCCCCcccCCCCCCcEEEc
Q 010381 449 AMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDL 482 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l 482 (512)
++++|+.|++.+|..-..-|..+..+ .|++|.+
T Consensus 414 gl~~LE~LdL~~NaiaSIq~nAFe~m-~Lk~Lv~ 446 (873)
T KOG4194|consen 414 GLEALEHLDLGDNAIASIQPNAFEPM-ELKELVM 446 (873)
T ss_pred cCcccceecCCCCcceeecccccccc-hhhhhhh
Confidence 55556666665555433334445444 5555543
No 7
>KOG0444 consensus Cytoskeletal regulator Flightless-I (contains leucine-rich and gelsolin repeats) [Cytoskeleton]
Probab=99.89 E-value=2.8e-26 Score=223.67 Aligned_cols=310 Identities=18% Similarity=0.182 Sum_probs=259.7
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC--ccCccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L 236 (512)
..++.+.+.......+|.+. .+.+|+.|.+.+|... .+ ..+ +.++.||.+++..|+++ .+|..+..+..|
T Consensus 32 t~~~WLkLnrt~L~~vPeEL~~lqkLEHLs~~HN~L~-----~vhGEL-s~Lp~LRsv~~R~N~LKnsGiP~diF~l~dL 105 (1255)
T KOG0444|consen 32 TQMTWLKLNRTKLEQVPEELSRLQKLEHLSMAHNQLI-----SVHGEL-SDLPRLRSVIVRDNNLKNSGIPTDIFRLKDL 105 (1255)
T ss_pred hheeEEEechhhhhhChHHHHHHhhhhhhhhhhhhhH-----hhhhhh-ccchhhHHHhhhccccccCCCCchhcccccc
Confidence 55677777755666767777 8999999999999876 45 677 89999999999999987 899999999999
Q ss_pred CeeeecCCCCcccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC
Q 010381 237 KYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI 315 (512)
Q Consensus 237 ~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~ 315 (512)
..|+|++|++++.|..+.+-.++-+|+|++|+|.++|.. +.++..|-.||+++|++. .+|+.+.+|..|++|.++++-
T Consensus 106 t~lDLShNqL~EvP~~LE~AKn~iVLNLS~N~IetIPn~lfinLtDLLfLDLS~NrLe-~LPPQ~RRL~~LqtL~Ls~NP 184 (1255)
T KOG0444|consen 106 TILDLSHNQLREVPTNLEYAKNSIVLNLSYNNIETIPNSLFINLTDLLFLDLSNNRLE-MLPPQIRRLSMLQTLKLSNNP 184 (1255)
T ss_pred eeeecchhhhhhcchhhhhhcCcEEEEcccCccccCCchHHHhhHhHhhhccccchhh-hcCHHHHHHhhhhhhhcCCCh
Confidence 999999999999999999999999999999999999977 458999999999999984 789999999999999998731
Q ss_pred --ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCC
Q 010381 316 --SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDP 393 (512)
Q Consensus 316 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~ 393 (512)
......+..+++|+.|++++.. .....+|.++..+.+|..++++.|.+|.+-. .+-.+ ++|+.|+|++|.++. .
T Consensus 185 L~hfQLrQLPsmtsL~vLhms~Tq-RTl~N~Ptsld~l~NL~dvDlS~N~Lp~vPe-cly~l-~~LrrLNLS~N~ite-L 260 (1255)
T KOG0444|consen 185 LNHFQLRQLPSMTSLSVLHMSNTQ-RTLDNIPTSLDDLHNLRDVDLSENNLPIVPE-CLYKL-RNLRRLNLSGNKITE-L 260 (1255)
T ss_pred hhHHHHhcCccchhhhhhhccccc-chhhcCCCchhhhhhhhhccccccCCCcchH-HHhhh-hhhheeccCcCceee-e
Confidence 1223445567778888888764 5677889999999999999999998874221 45577 999999999999874 3
Q ss_pred CCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc--eeeeCCCCccccceeeecCCcccCCCCccc
Q 010381 394 MPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD--EWTMGAGAMPKLESLIVDPCAYLRKLPEEL 471 (512)
Q Consensus 394 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 471 (512)
....+...+|++|+++.|.++. .+.. +..+++|+.|.+.+ +.++ .+|..+|.+..|+.+...+|. +.-+|.++
T Consensus 261 ~~~~~~W~~lEtLNlSrNQLt~-LP~a--vcKL~kL~kLy~n~-NkL~FeGiPSGIGKL~~Levf~aanN~-LElVPEgl 335 (1255)
T KOG0444|consen 261 NMTEGEWENLETLNLSRNQLTV-LPDA--VCKLTKLTKLYANN-NKLTFEGIPSGIGKLIQLEVFHAANNK-LELVPEGL 335 (1255)
T ss_pred eccHHHHhhhhhhccccchhcc-chHH--HhhhHHHHHHHhcc-CcccccCCccchhhhhhhHHHHhhccc-cccCchhh
Confidence 3356677889999999998754 2333 57889999999987 4554 899999999999999999876 88999999
Q ss_pred CCCCCCcEEEccCCh
Q 010381 472 WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 472 ~~l~~L~~L~l~~~~ 486 (512)
..|+.|+.|.++.|.
T Consensus 336 cRC~kL~kL~L~~Nr 350 (1255)
T KOG0444|consen 336 CRCVKLQKLKLDHNR 350 (1255)
T ss_pred hhhHHHHHhcccccc
Confidence 999999999999885
No 8
>KOG4194 consensus Membrane glycoprotein LIG-1 [Signal transduction mechanisms]
Probab=99.89 E-value=1.1e-24 Score=211.18 Aligned_cols=287 Identities=20% Similarity=0.229 Sum_probs=208.3
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch--hHHhcCCCeeEEEEecCCcCCccCc-cccCccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC--ENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFL 235 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~--~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~ 235 (512)
..+|.+.++.+.+.+++... .-.+++.|++.+|.+. ++ ..| ..+.+|.+|.|+.|.++.+|. .|..+++
T Consensus 149 ~alrslDLSrN~is~i~~~sfp~~~ni~~L~La~N~It-----~l~~~~F-~~lnsL~tlkLsrNrittLp~r~Fk~L~~ 222 (873)
T KOG4194|consen 149 PALRSLDLSRNLISEIPKPSFPAKVNIKKLNLASNRIT-----TLETGHF-DSLNSLLTLKLSRNRITTLPQRSFKRLPK 222 (873)
T ss_pred hhhhhhhhhhchhhcccCCCCCCCCCceEEeecccccc-----ccccccc-cccchheeeecccCcccccCHHHhhhcch
Confidence 34555566555555544444 4466667777666665 23 333 666677777777777776663 3455777
Q ss_pred cCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 236 LKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 236 L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
|+.|+|..|.|... .-.+..|++|+.|.|..|.+..+-++ +..+.++++|+|..|++...--.++.+|++|+.|+++.
T Consensus 223 L~~LdLnrN~irive~ltFqgL~Sl~nlklqrN~I~kL~DG~Fy~l~kme~l~L~~N~l~~vn~g~lfgLt~L~~L~lS~ 302 (873)
T KOG4194|consen 223 LESLDLNRNRIRIVEGLTFQGLPSLQNLKLQRNDISKLDDGAFYGLEKMEHLNLETNRLQAVNEGWLFGLTSLEQLDLSY 302 (873)
T ss_pred hhhhhccccceeeehhhhhcCchhhhhhhhhhcCcccccCcceeeecccceeecccchhhhhhcccccccchhhhhccch
Confidence 77777777766633 33566677777777777766666544 56788889999988888766667788999999999985
Q ss_pred -CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC
Q 010381 314 -PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE 391 (512)
Q Consensus 314 -~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~ 391 (512)
.| ...++.+...++|+.|+++++ ...+--+.++..+..|+.|.|+.|.+..+.+-.+..+ ++|++|+|++|.+..
T Consensus 303 NaI~rih~d~WsftqkL~~LdLs~N--~i~~l~~~sf~~L~~Le~LnLs~Nsi~~l~e~af~~l-ssL~~LdLr~N~ls~ 379 (873)
T KOG4194|consen 303 NAIQRIHIDSWSFTQKLKELDLSSN--RITRLDEGSFRVLSQLEELNLSHNSIDHLAEGAFVGL-SSLHKLDLRSNELSW 379 (873)
T ss_pred hhhheeecchhhhcccceeEecccc--ccccCChhHHHHHHHhhhhcccccchHHHHhhHHHHh-hhhhhhcCcCCeEEE
Confidence 22 445678889999999999999 4555556788899999999999999876655567788 999999999998754
Q ss_pred ---CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCccccceeeecC
Q 010381 392 ---DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLESLIVDP 460 (512)
Q Consensus 392 ---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~ 460 (512)
+....|..++.|+.|.+.||.+....-.. +.++++|+.|+|.++. +.++ +..+..+ .|++|.+..
T Consensus 380 ~IEDaa~~f~gl~~LrkL~l~gNqlk~I~krA--fsgl~~LE~LdL~~Na-iaSIq~nAFe~m-~Lk~Lv~nS 448 (873)
T KOG4194|consen 380 CIEDAAVAFNGLPSLRKLRLTGNQLKSIPKRA--FSGLEALEHLDLGDNA-IASIQPNAFEPM-ELKELVMNS 448 (873)
T ss_pred EEecchhhhccchhhhheeecCceeeecchhh--hccCcccceecCCCCc-ceeecccccccc-hhhhhhhcc
Confidence 33345778999999999999986544333 7899999999999954 4444 5666667 888887664
No 9
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.85 E-value=1.2e-24 Score=202.13 Aligned_cols=309 Identities=21% Similarity=0.228 Sum_probs=195.6
Q ss_pred ceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 162 NVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 162 ~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..+++.+..+...+.+++. .+..+..+...+|.+. ++ +++ .++.+|..|++.+|.++.+|+..-.++.|+.|
T Consensus 115 ~l~~l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-----slp~~~-~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~l 188 (565)
T KOG0472|consen 115 SLVKLDCSSNELKELPDSIGRLLDLEDLDATNNQIS-----SLPEDM-VNLSKLSKLDLEGNKLKALPENHIAMKRLKHL 188 (565)
T ss_pred hhhhhhccccceeecCchHHHHhhhhhhhccccccc-----cCchHH-HHHHHHHHhhccccchhhCCHHHHHHHHHHhc
Confidence 3445555545444545444 6666666666666554 34 455 66667777777777777666655557777777
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCC-CCCCCCCeeecCC-CCcc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYS-SSLKNLIFVSALH-PISC 317 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~-~~l~~L~~l~l~~-~~~~ 317 (512)
+...|.++.+|+.++.+.+|+-|+++.|.+..+| +|..+..|+.|+++.|.+. .+|... .++.++..++++. .+..
T Consensus 189 d~~~N~L~tlP~~lg~l~~L~~LyL~~Nki~~lP-ef~gcs~L~Elh~g~N~i~-~lpae~~~~L~~l~vLDLRdNklke 266 (565)
T KOG0472|consen 189 DCNSNLLETLPPELGGLESLELLYLRRNKIRFLP-EFPGCSLLKELHVGENQIE-MLPAEHLKHLNSLLVLDLRDNKLKE 266 (565)
T ss_pred ccchhhhhcCChhhcchhhhHHHHhhhcccccCC-CCCccHHHHHHHhcccHHH-hhHHHHhcccccceeeecccccccc
Confidence 7777777777777777777777777777777777 5777777777777777663 455544 3788888888875 5577
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---------------------------------
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK--------------------------------- 364 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~--------------------------------- 364 (512)
.|.++.-+++|..|+++++ ....+|.+++++ +|+.|.+.+|.+
T Consensus 267 ~Pde~clLrsL~rLDlSNN---~is~Lp~sLgnl-hL~~L~leGNPlrTiRr~ii~~gT~~vLKyLrs~~~~dglS~se~ 342 (565)
T KOG0472|consen 267 VPDEICLLRSLERLDLSNN---DISSLPYSLGNL-HLKFLALEGNPLRTIRREIISKGTQEVLKYLRSKIKDDGLSQSEG 342 (565)
T ss_pred CchHHHHhhhhhhhcccCC---ccccCCcccccc-eeeehhhcCCchHHHHHHHHcccHHHHHHHHHHhhccCCCCCCcc
Confidence 8888888888888888887 677788888888 888888877322
Q ss_pred -------------CCC------ccc-----CcCCCC---------CCccEEEEecccCC---------------------
Q 010381 365 -------------PSR------MVL-----SEYQFP---------PSLTHLSLSNTELK--------------------- 390 (512)
Q Consensus 365 -------------p~L------~~l-----~~~~lp---------~~L~~L~L~~~~~~--------------------- 390 (512)
|.. +.| .+...| .-.+..+++.|++.
T Consensus 343 ~~e~~~t~~~~~~~~~~~~i~tkiL~~s~~qlt~VPdEVfea~~~~~Vt~VnfskNqL~elPk~L~~lkelvT~l~lsnn 422 (565)
T KOG0472|consen 343 GTETAMTLPSESFPDIYAIITTKILDVSDKQLTLVPDEVFEAAKSEIVTSVNFSKNQLCELPKRLVELKELVTDLVLSNN 422 (565)
T ss_pred cccccCCCCCCcccchhhhhhhhhhcccccccccCCHHHHHHhhhcceEEEecccchHhhhhhhhHHHHHHHHHHHhhcC
Confidence 000 000 000000 11222333333221
Q ss_pred --CCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC----------------------CCcceeee-
Q 010381 391 --EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM----------------------YWLDEWTM- 445 (512)
Q Consensus 391 --~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~----------------------~~l~~l~~- 445 (512)
+.++..+..+++|..|++++|-+.+ .+.. .+.+..|+.|+++.+ +.+..++.
T Consensus 423 ~isfv~~~l~~l~kLt~L~L~NN~Ln~-LP~e--~~~lv~Lq~LnlS~NrFr~lP~~~y~lq~lEtllas~nqi~~vd~~ 499 (565)
T KOG0472|consen 423 KISFVPLELSQLQKLTFLDLSNNLLND-LPEE--MGSLVRLQTLNLSFNRFRMLPECLYELQTLETLLASNNQIGSVDPS 499 (565)
T ss_pred ccccchHHHHhhhcceeeecccchhhh-cchh--hhhhhhhheecccccccccchHHHhhHHHHHHHHhccccccccChH
Confidence 1222233445556666665433322 2211 344445555555552 23334432
Q ss_pred CCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 446 GAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 446 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+++|.+|..|++.+|. +..+|..++++++|++|+++|||
T Consensus 500 ~l~nm~nL~tLDL~nNd-lq~IPp~LgnmtnL~hLeL~gNp 539 (565)
T KOG0472|consen 500 GLKNMRNLTTLDLQNND-LQQIPPILGNMTNLRHLELDGNP 539 (565)
T ss_pred HhhhhhhcceeccCCCc-hhhCChhhccccceeEEEecCCc
Confidence 36789999999999887 88899999999999999999998
No 10
>PLN03210 Resistant to P. syringae 6; Provisional
Probab=99.85 E-value=1.3e-20 Score=212.20 Aligned_cols=290 Identities=21% Similarity=0.236 Sum_probs=206.2
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCc------CC-ccCccccCcc-ccCeeeecCCCCcccCh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAV------LD-QFPPGLENLF-LLKYLKLNIPSLKCLPS 251 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~------l~-~lp~~l~~l~-~L~~L~l~~~~i~~lp~ 251 (512)
...+++.+.+.-.... ...+ ...|..|++|+.|.+..+. +. .+|+.+..++ +|++|.+.++.++.+|.
T Consensus 530 g~~~v~~i~l~~~~~~---~~~i~~~aF~~m~~L~~L~~~~~~~~~~~~~~~~lp~~~~~lp~~Lr~L~~~~~~l~~lP~ 606 (1153)
T PLN03210 530 GTKKVLGITLDIDEID---ELHIHENAFKGMRNLLFLKFYTKKWDQKKEVRWHLPEGFDYLPPKLRLLRWDKYPLRCMPS 606 (1153)
T ss_pred ccceeeEEEeccCccc---eeeecHHHHhcCccccEEEEecccccccccceeecCcchhhcCcccEEEEecCCCCCCCCC
Confidence 3455666655443332 1234 4444999999999997653 22 5788887775 59999999999999998
Q ss_pred hhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC--CCccCchhcCCCCCCC
Q 010381 252 QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH--PISCTPDILGRLPNIQ 329 (512)
Q Consensus 252 ~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~--~~~~~~~~l~~l~~L~ 329 (512)
.+ ...+|+.|++.++.+..+|.++..+++|+.|+++++...+.+| .++.+++|+.|++.+ .....|..++++++|+
T Consensus 607 ~f-~~~~L~~L~L~~s~l~~L~~~~~~l~~Lk~L~Ls~~~~l~~ip-~ls~l~~Le~L~L~~c~~L~~lp~si~~L~~L~ 684 (1153)
T PLN03210 607 NF-RPENLVKLQMQGSKLEKLWDGVHSLTGLRNIDLRGSKNLKEIP-DLSMATNLETLKLSDCSSLVELPSSIQYLNKLE 684 (1153)
T ss_pred cC-CccCCcEEECcCccccccccccccCCCCCEEECCCCCCcCcCC-ccccCCcccEEEecCCCCccccchhhhccCCCC
Confidence 87 5799999999999999999999999999999999987667777 488899999999985 3467788899999999
Q ss_pred eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEE
Q 010381 330 TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLK 409 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 409 (512)
.|++++| .....+|..+ ++++|+.|+++++..- + .+...+.+|+.|++++|.+. ..|..+ .+++|++|.+.
T Consensus 685 ~L~L~~c--~~L~~Lp~~i-~l~sL~~L~Lsgc~~L--~--~~p~~~~nL~~L~L~~n~i~-~lP~~~-~l~~L~~L~l~ 755 (1153)
T PLN03210 685 DLDMSRC--ENLEILPTGI-NLKSLYRLNLSGCSRL--K--SFPDISTNISWLDLDETAIE-EFPSNL-RLENLDELILC 755 (1153)
T ss_pred EEeCCCC--CCcCccCCcC-CCCCCCEEeCCCCCCc--c--ccccccCCcCeeecCCCccc-cccccc-ccccccccccc
Confidence 9999999 5677777665 7899999999986421 1 22233378899999988875 344333 46666666665
Q ss_pred cccccCc------eeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEcc
Q 010381 410 QNSYLGR------KLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483 (512)
Q Consensus 410 ~~~~~~~------~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 483 (512)
++..... ..... ....++|+.|+|++|+.+..+|..++++++|+.|++++|..++.+|..+ ++++|+.|+++
T Consensus 756 ~~~~~~l~~~~~~l~~~~-~~~~~sL~~L~Ls~n~~l~~lP~si~~L~~L~~L~Ls~C~~L~~LP~~~-~L~sL~~L~Ls 833 (1153)
T PLN03210 756 EMKSEKLWERVQPLTPLM-TMLSPSLTRLFLSDIPSLVELPSSIQNLHKLEHLEIENCINLETLPTGI-NLESLESLDLS 833 (1153)
T ss_pred ccchhhccccccccchhh-hhccccchheeCCCCCCccccChhhhCCCCCCEEECCCCCCcCeeCCCC-CccccCEEECC
Confidence 4321100 00000 1224566666666666666666666666667777776666666666654 56666666666
Q ss_pred CCh
Q 010381 484 WPQ 486 (512)
Q Consensus 484 ~~~ 486 (512)
+|.
T Consensus 834 ~c~ 836 (1153)
T PLN03210 834 GCS 836 (1153)
T ss_pred CCC
Confidence 664
No 11
>KOG0472 consensus Leucine-rich repeat protein [Function unknown]
Probab=99.81 E-value=1.3e-22 Score=188.73 Aligned_cols=263 Identities=20% Similarity=0.202 Sum_probs=193.9
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
-.+..+.+++|... .+ +++ .++..|.+|+++.|.+..+|.+++.+..++.|+.++|++..+|..++.+.+|..
T Consensus 45 v~l~~lils~N~l~-----~l~~dl-~nL~~l~vl~~~~n~l~~lp~aig~l~~l~~l~vs~n~ls~lp~~i~s~~~l~~ 118 (565)
T KOG0472|consen 45 VDLQKLILSHNDLE-----VLREDL-KNLACLTVLNVHDNKLSQLPAAIGELEALKSLNVSHNKLSELPEQIGSLISLVK 118 (565)
T ss_pred cchhhhhhccCchh-----hccHhh-hcccceeEEEeccchhhhCCHHHHHHHHHHHhhcccchHhhccHHHhhhhhhhh
Confidence 34666777777665 44 777 888999999999999889999999999999999999999999999999999999
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhh
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
|+.+++.+.++|++++.+..|..++..+|++. ..|.+++++.+|..+++.+ .+...++..-+++.|++|+...+ .
T Consensus 119 l~~s~n~~~el~~~i~~~~~l~dl~~~~N~i~-slp~~~~~~~~l~~l~~~~n~l~~l~~~~i~m~~L~~ld~~~N---~ 194 (565)
T KOG0472|consen 119 LDCSSNELKELPDSIGRLLDLEDLDATNNQIS-SLPEDMVNLSKLSKLDLEGNKLKALPENHIAMKRLKHLDCNSN---L 194 (565)
T ss_pred hhccccceeecCchHHHHhhhhhhhccccccc-cCchHHHHHHHHHHhhccccchhhCCHHHHHHHHHHhcccchh---h
Confidence 99999999999999999999999988888874 5566666666665555543 22334444334555555554443 3
Q ss_pred hhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC 420 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 420 (512)
.+.+|. .++.+ .+|..|++..|.+.. .| .|+.+..|++|.++.|.+.. .+..
T Consensus 195 L~tlP~------------------------~lg~l-~~L~~LyL~~Nki~~-lP-ef~gcs~L~Elh~g~N~i~~-lpae 246 (565)
T KOG0472|consen 195 LETLPP------------------------ELGGL-ESLELLYLRRNKIRF-LP-EFPGCSLLKELHVGENQIEM-LPAE 246 (565)
T ss_pred hhcCCh------------------------hhcch-hhhHHHHhhhccccc-CC-CCCccHHHHHHHhcccHHHh-hHHH
Confidence 444444 45555 666666666666642 23 67777888888888666543 2222
Q ss_pred eCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCChH
Q 010381 421 VGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQT 487 (512)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~ 487 (512)
. ..+++++.+|++.+ +.++++|..+.-+.+|++|++++|. ++.+|..++++ +|+.|.+.|||-
T Consensus 247 ~-~~~L~~l~vLDLRd-Nklke~Pde~clLrsL~rLDlSNN~-is~Lp~sLgnl-hL~~L~leGNPl 309 (565)
T KOG0472|consen 247 H-LKHLNSLLVLDLRD-NKLKEVPDEICLLRSLERLDLSNND-ISSLPYSLGNL-HLKFLALEGNPL 309 (565)
T ss_pred H-hcccccceeeeccc-cccccCchHHHHhhhhhhhcccCCc-cccCCcccccc-eeeehhhcCCch
Confidence 2 45788888888888 6788888888888888888888876 77788888888 888888888884
No 12
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.79 E-value=1.4e-21 Score=199.33 Aligned_cols=111 Identities=22% Similarity=0.283 Sum_probs=84.8
Q ss_pred eeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 163 VKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
+..+.+..+.....|.+. ..-+|++|+++++... .+ ..+ ..+++|++|+++.|.+...|.+++++.+|++|
T Consensus 23 ~~~ln~~~N~~l~~pl~~~~~~v~L~~l~lsnn~~~-----~fp~~i-t~l~~L~~ln~s~n~i~~vp~s~~~~~~l~~l 96 (1081)
T KOG0618|consen 23 LQILNLRRNSLLSRPLEFVEKRVKLKSLDLSNNQIS-----SFPIQI-TLLSHLRQLNLSRNYIRSVPSSCSNMRNLQYL 96 (1081)
T ss_pred HHhhhccccccccCchHHhhheeeeEEeeccccccc-----cCCchh-hhHHHHhhcccchhhHhhCchhhhhhhcchhh
Confidence 334444433333333333 4555999999988876 55 555 77889999999999999999889999999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhcc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMM 279 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l 279 (512)
+|.+|.+..+|.++..+.+|+.||++.|.+..+|..+..+
T Consensus 97 nL~~n~l~~lP~~~~~lknl~~LdlS~N~f~~~Pl~i~~l 136 (1081)
T KOG0618|consen 97 NLKNNRLQSLPASISELKNLQYLDLSFNHFGPIPLVIEVL 136 (1081)
T ss_pred eeccchhhcCchhHHhhhcccccccchhccCCCchhHHhh
Confidence 9999999999999999999999999999887777544333
No 13
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.69 E-value=1.7e-16 Score=166.91 Aligned_cols=254 Identities=19% Similarity=0.086 Sum_probs=148.3
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
.+-..|++..+.+. .+ +.+ . ++|+.|++++|.++.+|.. .++|++|++++|.++.+|.. .++|+.
T Consensus 201 ~~~~~LdLs~~~Lt-----sLP~~l-~--~~L~~L~L~~N~Lt~LP~l---p~~Lk~LdLs~N~LtsLP~l---p~sL~~ 266 (788)
T PRK15387 201 NGNAVLNVGESGLT-----TLPDCL-P--AHITTLVIPDNNLTSLPAL---PPELRTLEVSGNQLTSLPVL---PPGLLE 266 (788)
T ss_pred CCCcEEEcCCCCCC-----cCCcch-h--cCCCEEEccCCcCCCCCCC---CCCCcEEEecCCccCcccCc---ccccce
Confidence 33445566655543 33 222 1 3566677777777666642 35677777777777766642 356677
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhh
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
|++++|.+..+|... .+|+.|++++|.+. .+|.. .++|+.|++++ .+..++.. ..+|+.|.+++| .
T Consensus 267 L~Ls~N~L~~Lp~lp---~~L~~L~Ls~N~Lt-~LP~~---p~~L~~LdLS~N~L~~Lp~l---p~~L~~L~Ls~N---~ 333 (788)
T PRK15387 267 LSIFSNPLTHLPALP---SGLCKLWIFGNQLT-SLPVL---PPGLQELSVSDNQLASLPAL---PSELCKLWAYNN---Q 333 (788)
T ss_pred eeccCCchhhhhhch---hhcCEEECcCCccc-ccccc---ccccceeECCCCccccCCCC---cccccccccccC---c
Confidence 777777666665422 45666777776664 34432 34566666664 22222221 234666666666 2
Q ss_pred hhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC 420 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 420 (512)
...+|.. ..+|+.|++++|.+.. +...|++|+.|++++|.+.. .|.. ..+|+.|++++|.+... +.
T Consensus 334 L~~LP~l---p~~Lq~LdLS~N~Ls~-----LP~lp~~L~~L~Ls~N~L~~-LP~l---~~~L~~LdLs~N~Lt~L-P~- 399 (788)
T PRK15387 334 LTSLPTL---PSGLQELSVSDNQLAS-----LPTLPSELYKLWAYNNRLTS-LPAL---PSGLKELIVSGNRLTSL-PV- 399 (788)
T ss_pred ccccccc---ccccceEecCCCccCC-----CCCCCcccceehhhcccccc-Cccc---ccccceEEecCCcccCC-CC-
Confidence 2334321 1367777777776543 22334677777777777653 3322 24677777777776532 11
Q ss_pred eCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 421 VGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..++|+.|++++| .++.+|.. +.+|+.|++++|. ++.+|..+.++++|+.|++++|+
T Consensus 400 ----l~s~L~~LdLS~N-~LssIP~l---~~~L~~L~Ls~Nq-Lt~LP~sl~~L~~L~~LdLs~N~ 456 (788)
T PRK15387 400 ----LPSELKELMVSGN-RLTSLPML---PSGLLSLSVYRNQ-LTRLPESLIHLSSETTVNLEGNP 456 (788)
T ss_pred ----cccCCCEEEccCC-cCCCCCcc---hhhhhhhhhccCc-ccccChHHhhccCCCeEECCCCC
Confidence 1356777777774 46666642 3467777777766 55677777777777777777776
No 14
>KOG0618 consensus Serine/threonine phosphatase 2C containing leucine-rich repeats, similar to SCN circadian oscillatory protein (SCOP) [Signal transduction mechanisms]
Probab=99.68 E-value=1.2e-18 Score=178.24 Aligned_cols=305 Identities=22% Similarity=0.246 Sum_probs=179.5
Q ss_pred eeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeee
Q 010381 163 VKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL 241 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l 241 (512)
++++.++.+.....|... ..++|+.|.++.|.+. .++.-+.++++|++|+|.+|.+..+|.++..+++|++|++
T Consensus 47 L~~l~lsnn~~~~fp~~it~l~~L~~ln~s~n~i~-----~vp~s~~~~~~l~~lnL~~n~l~~lP~~~~~lknl~~Ldl 121 (1081)
T KOG0618|consen 47 LKSLDLSNNQISSFPIQITLLSHLRQLNLSRNYIR-----SVPSSCSNMRNLQYLNLKNNRLQSLPASISELKNLQYLDL 121 (1081)
T ss_pred eEEeeccccccccCCchhhhHHHHhhcccchhhHh-----hCchhhhhhhcchhheeccchhhcCchhHHhhhccccccc
Confidence 777777755666666666 8888888888888775 3422237888888888888888888888888888888888
Q ss_pred cCCCCcccChhhhcCcCCcE-----------------------------------------EecCCccccccchhhhccc
Q 010381 242 NIPSLKCLPSQLCTLLNLQT-----------------------------------------LQMPSSYIDQSPEDIWMMQ 280 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~-----------------------------------------L~L~~~~~~~lp~~i~~l~ 280 (512)
++|.+..+|..+..+..++. |||++|.+..+ .+..+.
T Consensus 122 S~N~f~~~Pl~i~~lt~~~~~~~s~N~~~~~lg~~~ik~~~l~~n~l~~~~~~~i~~l~~~ldLr~N~~~~~--dls~~~ 199 (1081)
T KOG0618|consen 122 SFNHFGPIPLVIEVLTAEEELAASNNEKIQRLGQTSIKKLDLRLNVLGGSFLIDIYNLTHQLDLRYNEMEVL--DLSNLA 199 (1081)
T ss_pred chhccCCCchhHHhhhHHHHHhhhcchhhhhhccccchhhhhhhhhcccchhcchhhhheeeecccchhhhh--hhhhcc
Confidence 88877766655544433333 33333322200 011111
Q ss_pred ------------------------------------------cCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 281 ------------------------------------------KLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 281 ------------------------------------------~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
+|++++++.+++. .+|..++.+.+|+.+.+.+ .+..
T Consensus 200 ~l~~l~c~rn~ls~l~~~g~~l~~L~a~~n~l~~~~~~p~p~nl~~~dis~n~l~-~lp~wi~~~~nle~l~~n~N~l~~ 278 (1081)
T KOG0618|consen 200 NLEVLHCERNQLSELEISGPSLTALYADHNPLTTLDVHPVPLNLQYLDISHNNLS-NLPEWIGACANLEALNANHNRLVA 278 (1081)
T ss_pred chhhhhhhhcccceEEecCcchheeeeccCcceeeccccccccceeeecchhhhh-cchHHHHhcccceEecccchhHHh
Confidence 1222222222221 5677788888888888875 4466
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc---------------------------
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL--------------------------- 370 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l--------------------------- 370 (512)
.|..+...++|+.|.+..| ..+-+|.....++.|++|+|..|.++.+-..
T Consensus 279 lp~ri~~~~~L~~l~~~~n---el~yip~~le~~~sL~tLdL~~N~L~~lp~~~l~v~~~~l~~ln~s~n~l~~lp~~~e 355 (1081)
T KOG0618|consen 279 LPLRISRITSLVSLSAAYN---ELEYIPPFLEGLKSLRTLDLQSNNLPSLPDNFLAVLNASLNTLNVSSNKLSTLPSYEE 355 (1081)
T ss_pred hHHHHhhhhhHHHHHhhhh---hhhhCCCcccccceeeeeeehhccccccchHHHhhhhHHHHHHhhhhccccccccccc
Confidence 7777778888888888777 5666777777788888888887655432211
Q ss_pred ----------------------CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCcc
Q 010381 371 ----------------------SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPE 428 (512)
Q Consensus 371 ----------------------~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~ 428 (512)
-+..+ ++|+.|+|++|.+...+...+.+++.|++|+|+||.++... .. +..++.
T Consensus 356 ~~~~~Lq~LylanN~Ltd~c~p~l~~~-~hLKVLhLsyNrL~~fpas~~~kle~LeeL~LSGNkL~~Lp-~t--va~~~~ 431 (1081)
T KOG0618|consen 356 NNHAALQELYLANNHLTDSCFPVLVNF-KHLKVLHLSYNRLNSFPASKLRKLEELEELNLSGNKLTTLP-DT--VANLGR 431 (1081)
T ss_pred hhhHHHHHHHHhcCcccccchhhhccc-cceeeeeecccccccCCHHHHhchHHhHHHhcccchhhhhh-HH--HHhhhh
Confidence 12233 44555555555443333333444555555555555443221 11 334445
Q ss_pred ccEEEecCCCCcceeeeCCCCccccceeeecCCcccCC--CCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRK--LPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~--lp~~~~~l~~L~~L~l~~~~ 486 (512)
|++|...+ +.+...| .+..++.|+.++++.|. ++. +|..... ++|++|+++||.
T Consensus 432 L~tL~ahs-N~l~~fP-e~~~l~qL~~lDlS~N~-L~~~~l~~~~p~-p~LkyLdlSGN~ 487 (1081)
T KOG0618|consen 432 LHTLRAHS-NQLLSFP-ELAQLPQLKVLDLSCNN-LSEVTLPEALPS-PNLKYLDLSGNT 487 (1081)
T ss_pred hHHHhhcC-Cceeech-hhhhcCcceEEecccch-hhhhhhhhhCCC-cccceeeccCCc
Confidence 55554444 3344444 35556666666666554 322 2222211 677777777776
No 15
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.68 E-value=8.6e-17 Score=170.20 Aligned_cols=244 Identities=19% Similarity=0.219 Sum_probs=174.1
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCc
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~ 290 (512)
.+..+|+++++.++.+|..+. ++|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|++++|
T Consensus 178 ~~~~~L~L~~~~LtsLP~~Ip--~~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N 251 (754)
T PRK15370 178 NNKTELRLKILGLTTIPACIP--EQITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSIN 251 (754)
T ss_pred cCceEEEeCCCCcCcCCcccc--cCCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCC
Confidence 456788888888888877653 478888888888888887664 588888888888888887554 47888888888
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMV 369 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~ 369 (512)
.+. .+|..+. .+|+.|++++ .+..+|..+. .+|+.|++++| ....+|..+. ++|+.|++++|.+..+
T Consensus 252 ~L~-~LP~~l~--s~L~~L~Ls~N~L~~LP~~l~--~sL~~L~Ls~N---~Lt~LP~~lp--~sL~~L~Ls~N~Lt~L-- 319 (754)
T PRK15370 252 RIT-ELPERLP--SALQSLDLFHNKISCLPENLP--EELRYLSVYDN---SIRTLPAHLP--SGITHLNVQSNSLTAL-- 319 (754)
T ss_pred ccC-cCChhHh--CCCCEEECcCCccCccccccC--CCCcEEECCCC---ccccCcccch--hhHHHHHhcCCccccC--
Confidence 875 6676554 4678888875 3344554443 47889999887 3334444332 4688888888766431
Q ss_pred cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCC
Q 010381 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGA 449 (512)
Q Consensus 370 l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~ 449 (512)
-..+|++|+.|++++|.++. .|..+ .++|+.|++++|.+.. .+.. -.++|+.|+|++| .+..+|..+.
T Consensus 320 --P~~l~~sL~~L~Ls~N~Lt~-LP~~l--~~sL~~L~Ls~N~L~~-LP~~----lp~~L~~LdLs~N-~Lt~LP~~l~- 387 (754)
T PRK15370 320 --PETLPPGLKTLEAGENALTS-LPASL--PPELQVLDVSKNQITV-LPET----LPPTITTLDVSRN-ALTNLPENLP- 387 (754)
T ss_pred --CccccccceeccccCCcccc-CChhh--cCcccEEECCCCCCCc-CChh----hcCCcCEEECCCC-cCCCCCHhHH-
Confidence 11234789999999998865 44444 3689999999988763 2221 1368999999995 5777776443
Q ss_pred ccccceeeecCCcccCCCCccc----CCCCCCcEEEccCCh
Q 010381 450 MPKLESLIVDPCAYLRKLPEEL----WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 450 l~~L~~L~l~~c~~l~~lp~~~----~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++|. +..+|..+ ..++++..+++.+||
T Consensus 388 -~sL~~LdLs~N~-L~~LP~sl~~~~~~~~~l~~L~L~~Np 426 (754)
T PRK15370 388 -AALQIMQASRNN-LVRLPESLPHFRGEGPQPTRIIVEYNP 426 (754)
T ss_pred -HHHHHHhhccCC-cccCchhHHHHhhcCCCccEEEeeCCC
Confidence 479999999987 55676644 345888999999998
No 16
>PRK15387 E3 ubiquitin-protein ligase SspH2; Provisional
Probab=99.60 E-value=4.3e-15 Score=156.46 Aligned_cols=262 Identities=15% Similarity=0.063 Sum_probs=189.2
Q ss_pred eeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeec
Q 010381 163 VKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLN 242 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~ 242 (512)
-..+.+..+....+|... .++++.|.+.+|.+. .++ ..+++|++|++++|.++.+|.. .++|+.|+++
T Consensus 203 ~~~LdLs~~~LtsLP~~l-~~~L~~L~L~~N~Lt-----~LP---~lp~~Lk~LdLs~N~LtsLP~l---p~sL~~L~Ls 270 (788)
T PRK15387 203 NAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-----SLP---ALPPELRTLEVSGNQLTSLPVL---PPGLLELSIF 270 (788)
T ss_pred CcEEEcCCCCCCcCCcch-hcCCCEEEccCCcCC-----CCC---CCCCCCcEEEecCCccCcccCc---ccccceeecc
Confidence 445666655555544433 347999999988775 222 3468899999999999988864 3689999999
Q ss_pred CCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchh
Q 010381 243 IPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDI 321 (512)
Q Consensus 243 ~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~ 321 (512)
+|.++.+|.. ..+|+.|++++|.++.+|.. .++|+.|++++|.+.+ +|.... +|+.|++.+ .+..+|.
T Consensus 271 ~N~L~~Lp~l---p~~L~~L~Ls~N~Lt~LP~~---p~~L~~LdLS~N~L~~-Lp~lp~---~L~~L~Ls~N~L~~LP~- 339 (788)
T PRK15387 271 SNPLTHLPAL---PSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPALPS---ELCKLWAYNNQLTSLPT- 339 (788)
T ss_pred CCchhhhhhc---hhhcCEEECcCCcccccccc---ccccceeECCCCcccc-CCCCcc---cccccccccCccccccc-
Confidence 9999888763 36788999999999988863 4789999999998864 554333 455666664 2233332
Q ss_pred cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 322 LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 322 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
-..+|+.|++++| ....+|.. ..+|+.|++++|.+.. +..+|.+|+.|++++|.+.. .|.. .+
T Consensus 340 --lp~~Lq~LdLS~N---~Ls~LP~l---p~~L~~L~Ls~N~L~~-----LP~l~~~L~~LdLs~N~Lt~-LP~l---~s 402 (788)
T PRK15387 340 --LPSGLQELSVSDN---QLASLPTL---PSELYKLWAYNNRLTS-----LPALPSGLKELIVSGNRLTS-LPVL---PS 402 (788)
T ss_pred --cccccceEecCCC---ccCCCCCC---Ccccceehhhcccccc-----CcccccccceEEecCCcccC-CCCc---cc
Confidence 1247999999998 34445542 3578888998887653 22334789999999999874 3332 36
Q ss_pred ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCccc
Q 010381 402 YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEEL 471 (512)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~ 471 (512)
+|+.|++++|.+.. .+. ...+|+.|++++ +.++.+|..+..+++|+.|++++|+.....|..+
T Consensus 403 ~L~~LdLS~N~Lss-IP~-----l~~~L~~L~Ls~-NqLt~LP~sl~~L~~L~~LdLs~N~Ls~~~~~~L 465 (788)
T PRK15387 403 ELKELMVSGNRLTS-LPM-----LPSGLLSLSVYR-NQLTRLPESLIHLSSETTVNLEGNPLSERTLQAL 465 (788)
T ss_pred CCCEEEccCCcCCC-CCc-----chhhhhhhhhcc-CcccccChHHhhccCCCeEECCCCCCCchHHHHH
Confidence 79999999998764 222 235788999998 5688999889999999999999999765544433
No 17
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.60 E-value=1.3e-17 Score=138.33 Aligned_cols=153 Identities=19% Similarity=0.240 Sum_probs=99.8
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+.+.+.|.++.|.++.+|..+..+.+|+.|++.+|+|+++|.+++.+++|+.|++.-|.+..+|.+++.++.|+.||+
T Consensus 30 f~~s~ITrLtLSHNKl~~vppnia~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~levldl 109 (264)
T KOG0617|consen 30 FNMSNITRLTLSHNKLTVVPPNIAELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPALEVLDL 109 (264)
T ss_pred cchhhhhhhhcccCceeecCCcHHHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchhhhhhc
Confidence 45556666667777777667777777777777777777777777777777777777776666667777777777777777
Q ss_pred CCcccCC-CCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC
Q 010381 288 GSITLPA-PPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 288 ~~~~~~~-~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~ 363 (512)
++|++.. .+|..+..|+.|+.+.++. .+..+|..++++++|+.|.+..+ ..-++|..++.+..|+.|.+.+|+
T Consensus 110 tynnl~e~~lpgnff~m~tlralyl~dndfe~lp~dvg~lt~lqil~lrdn---dll~lpkeig~lt~lrelhiqgnr 184 (264)
T KOG0617|consen 110 TYNNLNENSLPGNFFYMTTLRALYLGDNDFEILPPDVGKLTNLQILSLRDN---DLLSLPKEIGDLTRLRELHIQGNR 184 (264)
T ss_pred cccccccccCCcchhHHHHHHHHHhcCCCcccCChhhhhhcceeEEeeccC---chhhCcHHHHHHHHHHHHhcccce
Confidence 7666654 4566666666666666653 34556666666666666666665 444556666666555555555544
No 18
>PRK15370 E3 ubiquitin-protein ligase SlrP; Provisional
Probab=99.60 E-value=1.8e-15 Score=160.31 Aligned_cols=223 Identities=20% Similarity=0.244 Sum_probs=114.6
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcc
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 291 (512)
.|+.|++++|.++.+|..+. .+|++|++++|.++.+|..+. .+|+.|+|++|.+..+|..+. .+|+.|++++|.
T Consensus 200 ~L~~L~Ls~N~LtsLP~~l~--~nL~~L~Ls~N~LtsLP~~l~--~~L~~L~Ls~N~L~~LP~~l~--s~L~~L~Ls~N~ 273 (754)
T PRK15370 200 QITTLILDNNELKSLPENLQ--GNIKTLYANSNQLTSIPATLP--DTIQEMELSINRITELPERLP--SALQSLDLFHNK 273 (754)
T ss_pred CCcEEEecCCCCCcCChhhc--cCCCEEECCCCccccCChhhh--ccccEEECcCCccCcCChhHh--CCCCEEECcCCc
Confidence 45666666666665555443 356666666666665555443 356666666666556655443 356666666655
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
+. .+|..+. ++|+.|++++ .+..+|..+. ++|+.|++++| ....+|..+ .++|+.|++++|.+..+
T Consensus 274 L~-~LP~~l~--~sL~~L~Ls~N~Lt~LP~~lp--~sL~~L~Ls~N---~Lt~LP~~l--~~sL~~L~Ls~N~Lt~L--- 340 (754)
T PRK15370 274 IS-CLPENLP--EELRYLSVYDNSIRTLPAHLP--SGITHLNVQSN---SLTALPETL--PPGLKTLEAGENALTSL--- 340 (754)
T ss_pred cC-ccccccC--CCCcEEECCCCccccCcccch--hhHHHHHhcCC---ccccCCccc--cccceeccccCCccccC---
Confidence 54 3454443 3555666553 2222332221 34556666655 222333322 24566666666544321
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC---
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA--- 447 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~--- 447 (512)
-..+|++|+.|++++|.+.. .|..+ .++|+.|++++|.+... +.. -.++|+.|++++ +.+..+|..+
T Consensus 341 -P~~l~~sL~~L~Ls~N~L~~-LP~~l--p~~L~~LdLs~N~Lt~L-P~~----l~~sL~~LdLs~-N~L~~LP~sl~~~ 410 (754)
T PRK15370 341 -PASLPPELQVLDVSKNQITV-LPETL--PPTITTLDVSRNALTNL-PEN----LPAALQIMQASR-NNLVRLPESLPHF 410 (754)
T ss_pred -ChhhcCcccEEECCCCCCCc-CChhh--cCCcCEEECCCCcCCCC-CHh----HHHHHHHHhhcc-CCcccCchhHHHH
Confidence 11233566677776666542 33332 24666677766665432 111 113566666666 3455554322
Q ss_pred -CCccccceeeecCCcc
Q 010381 448 -GAMPKLESLIVDPCAY 463 (512)
Q Consensus 448 -~~l~~L~~L~l~~c~~ 463 (512)
+.++++..|++.+|+.
T Consensus 411 ~~~~~~l~~L~L~~Npl 427 (754)
T PRK15370 411 RGEGPQPTRIIVEYNPF 427 (754)
T ss_pred hhcCCCccEEEeeCCCc
Confidence 3346666666666663
No 19
>KOG0617 consensus Ras suppressor protein (contains leucine-rich repeats) [Signal transduction mechanisms]
Probab=99.58 E-value=1.8e-17 Score=137.47 Aligned_cols=161 Identities=20% Similarity=0.335 Sum_probs=143.1
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 259 (512)
+++++..|.+++|... .+ +.+ ..+.+|++|++.+|.++++|.+++.+++||.|++.-|++..+|..++.++-|
T Consensus 31 ~~s~ITrLtLSHNKl~-----~vppni-a~l~nlevln~~nnqie~lp~~issl~klr~lnvgmnrl~~lprgfgs~p~l 104 (264)
T KOG0617|consen 31 NMSNITRLTLSHNKLT-----VVPPNI-AELKNLEVLNLSNNQIEELPTSISSLPKLRILNVGMNRLNILPRGFGSFPAL 104 (264)
T ss_pred chhhhhhhhcccCcee-----ecCCcH-HHhhhhhhhhcccchhhhcChhhhhchhhhheecchhhhhcCccccCCCchh
Confidence 7888888899988876 45 777 8999999999999999999999999999999999999999999999999999
Q ss_pred cEEecCCccc--cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEecc
Q 010381 260 QTLQMPSSYI--DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 260 ~~L~L~~~~~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
+.||+++|++ ..+|..+..+..|+.|++++|.+ ..+|..++++++|+.+.++. ..-.+|.+++.+++|++|++.++
T Consensus 105 evldltynnl~e~~lpgnff~m~tlralyl~dndf-e~lp~dvg~lt~lqil~lrdndll~lpkeig~lt~lrelhiqgn 183 (264)
T KOG0617|consen 105 EVLDLTYNNLNENSLPGNFFYMTTLRALYLGDNDF-EILPPDVGKLTNLQILSLRDNDLLSLPKEIGDLTRLRELHIQGN 183 (264)
T ss_pred hhhhccccccccccCCcchhHHHHHHHHHhcCCCc-ccCChhhhhhcceeEEeeccCchhhCcHHHHHHHHHHHHhcccc
Confidence 9999999965 56899999999999999999988 47899999999999999985 45788999999999999999998
Q ss_pred chhhhhhHHHhccCC
Q 010381 337 LSYYQSRVSKSLCKL 351 (512)
Q Consensus 337 ~~~~~~~l~~~l~~l 351 (512)
....+|..++++
T Consensus 184 ---rl~vlppel~~l 195 (264)
T KOG0617|consen 184 ---RLTVLPPELANL 195 (264)
T ss_pred ---eeeecChhhhhh
Confidence 455566655543
No 20
>KOG4658 consensus Apoptotic ATPase [Signal transduction mechanisms]
Probab=99.57 E-value=7.7e-15 Score=157.83 Aligned_cols=294 Identities=19% Similarity=0.155 Sum_probs=186.3
Q ss_pred HHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCC-CceeEEEcCHHHHHHHHHhhhhc--CceecCCCC---
Q 010381 83 RQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAG-GTIKSCYFPSIVDTSLFLVAEKT--EFVWSPDMV--- 156 (512)
Q Consensus 83 ~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~-~~~~~~~mhdli~~~~~~~~~~~--~~~~~~~~~--- 156 (512)
.++.++..-..+++++.+...+..+..|++.||++..+.... ......++-++++.-.....+.+ .......+.
T Consensus 410 ~~lK~CFLycalFPED~~I~~e~Li~yWiaEGfi~~~~~~~~~~d~G~~~i~~LV~~~Ll~~~~~~~~~~~~kmHDvvRe 489 (889)
T KOG4658|consen 410 EELKSCFLYCALFPEDYEIKKEKLIEYWIAEGFIDPLDGGETAEDVGYDYIEELVRASLLIEERDEGRKETVKMHDVVRE 489 (889)
T ss_pred HHHHHHHHhhccCCcccccchHHHHHHHHhccCcCccccccchhcchHHHHHHHHHHHHHhhcccccceeEEEeeHHHHH
Confidence 567778888888889999999999999999999998432111 11122233333333333322211 011111111
Q ss_pred ------CCCCCceeEEEEEec-CCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc--CCccC
Q 010381 157 ------EEPMANVKRCFILKD-LIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV--LDQFP 227 (512)
Q Consensus 157 ------~~~~~~~r~l~l~~~-~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~--l~~lp 227 (512)
......-....+... .....+........|.+.+.++.+.. +..- ..++.|++|-+.++. +..++
T Consensus 490 ~al~ias~~~~~~e~~iv~~~~~~~~~~~~~~~~~~rr~s~~~~~~~~-----~~~~-~~~~~L~tLll~~n~~~l~~is 563 (889)
T KOG4658|consen 490 MALWIASDFGKQEENQIVSDGVGLSEIPQVKSWNSVRRMSLMNNKIEH-----IAGS-SENPKLRTLLLQRNSDWLLEIS 563 (889)
T ss_pred HHHHHhccccccccceEEECCcCccccccccchhheeEEEEeccchhh-----ccCC-CCCCccceEEEeecchhhhhcC
Confidence 001111111222211 22222222266788999999887752 2222 456689999999986 55555
Q ss_pred -ccccCccccCeeeecCC-CCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCC
Q 010381 228 -PGLENLFLLKYLKLNIP-SLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKN 305 (512)
Q Consensus 228 -~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~ 305 (512)
+.|..++.|++|++++| .+..+|.+|++|.+|++|+++++.+..+|.+++++++|.+||+..+.....+|.....|.+
T Consensus 564 ~~ff~~m~~LrVLDLs~~~~l~~LP~~I~~Li~LryL~L~~t~I~~LP~~l~~Lk~L~~Lnl~~~~~l~~~~~i~~~L~~ 643 (889)
T KOG4658|consen 564 GEFFRSLPLLRVLDLSGNSSLSKLPSSIGELVHLRYLDLSDTGISHLPSGLGNLKKLIYLNLEVTGRLESIPGILLELQS 643 (889)
T ss_pred HHHHhhCcceEEEECCCCCccCcCChHHhhhhhhhcccccCCCccccchHHHHHHhhheeccccccccccccchhhhccc
Confidence 44778999999999976 5779999999999999999999999999999999999999999988776666777777999
Q ss_pred CCeeecCCC----CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCc----EEEeccCC---CCCCcccCcCC
Q 010381 306 LIFVSALHP----ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLE----WLKLVNES---KPSRMVLSEYQ 374 (512)
Q Consensus 306 L~~l~l~~~----~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~----~L~l~~~~---~p~L~~l~~~~ 374 (512)
|++|.+..+ .......+..+.+|+.+.+.... . .+...+..+..|. .+.+.+.. .+. .+..
T Consensus 644 Lr~L~l~~s~~~~~~~~l~el~~Le~L~~ls~~~~s--~--~~~e~l~~~~~L~~~~~~l~~~~~~~~~~~~----~~~~ 715 (889)
T KOG4658|consen 644 LRVLRLPRSALSNDKLLLKELENLEHLENLSITISS--V--LLLEDLLGMTRLRSLLQSLSIEGCSKRTLIS----SLGS 715 (889)
T ss_pred ccEEEeeccccccchhhHHhhhcccchhhheeecch--h--HhHhhhhhhHHHHHHhHhhhhcccccceeec----cccc
Confidence 999998742 13344556677777777776552 1 1111122222222 22211111 112 4556
Q ss_pred CCCCccEEEEecccCCC
Q 010381 375 FPPSLTHLSLSNTELKE 391 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~ 391 (512)
+ .+|+.|.+.+|.+.+
T Consensus 716 l-~~L~~L~i~~~~~~e 731 (889)
T KOG4658|consen 716 L-GNLEELSILDCGISE 731 (889)
T ss_pred c-cCcceEEEEcCCCch
Confidence 6 888888888887653
No 21
>PF00931 NB-ARC: NB-ARC domain; InterPro: IPR002182 This is the NB-ARC domain, a novel signalling motif found in bacteria and eukaryotes, shared by plant resistance gene products and regulators of cell death in animals []. This domain has been structurally characterised in the human protein apoptotic protease-activating factor 1 (Apaf-1) []. It contains the three-layered alpha-beta fold and subsequent short alpha-helical region characteristic of the AAA+ ATPase domain superfamily. While this domain is thought to bind and hyrolyse ATP, only ADP binding has been experimentally verified. It is proposed that binding and hydrolysis of ATP by this domain induces conformational changes the the overall protein, leading to formation of the apoptosome.; GO: 0043531 ADP binding; PDB: 3IZA_E 1Z6T_D 3SFZ_A 3SHF_A 1VT4_M 3IZ8_G 3LQR_A 2A5Y_C 3LQQ_A.
Probab=99.56 E-value=1.9e-16 Score=152.55 Aligned_cols=92 Identities=29% Similarity=0.498 Sum_probs=79.2
Q ss_pred CCCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCCc--cccCCCCHHHHHhhhcccCCCCcchhhHhhhhcccCCC
Q 010381 1 MENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPLE--NYLQGETIPTILSRICSVLELPFHLKICCIYLCVFPPS 77 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~~--~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a~fp~~ 77 (512)
+++|+|+||||+++|+.|+ +.+..+|+++++.+.+...+ +.. ..++.++. +||+.||++.|+||+|||+||++
T Consensus 189 ~~~c~glPLal~~~a~~l~~~~~~~~w~~~~~~l~~~~~~~~~~~--~~~~~~l~--~s~~~L~~~~~~~f~~L~~f~~~ 264 (287)
T PF00931_consen 189 VEKCGGLPLALKLIASYLRSKSTVDEWEEALEELENSLRESRDYD--RSVFSALE--LSYDSLPDELRRCFLYLSIFPEG 264 (287)
T ss_dssp HHHTTT-HHHHHHHHHHHHHHHSSSSHHHHHHHHHHCHTCSSGSC--HHHHHHHH--HHHHSSHTCCHHHHHHGGGSGTT
T ss_pred ccccccccccccccccccccccccccccccccccccccccccccc--ccccccce--echhcCCccHHHHHhhCcCCCCC
Confidence 3689999999999999998 66789999999887766531 112 78999999 99999999999999999999999
Q ss_pred ceeCHHHHHHHHHHcCCCC
Q 010381 78 IEISTRQLYQLWEAEGFIP 96 (512)
Q Consensus 78 ~~i~~~~Li~~w~~~g~~~ 96 (512)
+.|+++.|+++|+++|+++
T Consensus 265 ~~i~~~~li~lW~~e~~i~ 283 (287)
T PF00931_consen 265 VPIPRERLIRLWVAEGFIS 283 (287)
T ss_dssp S-EEHHHHHHHHTT-HHTC
T ss_pred ceECHHHHHHHHHHCCCCc
Confidence 9999999999999999984
No 22
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.53 E-value=6.9e-16 Score=151.10 Aligned_cols=264 Identities=20% Similarity=0.146 Sum_probs=151.7
Q ss_pred hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCcc-------cChhhhcCcCCcEEecCCcccc-
Q 010381 204 ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKC-------LPSQLCTLLNLQTLQMPSSYID- 270 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~-------lp~~~~~l~~L~~L~L~~~~~~- 270 (512)
..++..+..|++|+++++.++ .++..+...+.|++|+++++.+.. ++..+.++++|+.|++++|.+.
T Consensus 16 ~~~~~~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~ 95 (319)
T cd00116 16 TELLPKLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGP 95 (319)
T ss_pred HHHHHHHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCCh
Confidence 344466677888888888874 355556667778888887765542 3344566778888888877554
Q ss_pred ccchhhhcccc---CceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCC-CCCCeEEEeccc--hhhhhhH
Q 010381 271 QSPEDIWMMQK---LMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRL-PNIQTLRISGDL--SYYQSRV 344 (512)
Q Consensus 271 ~lp~~i~~l~~---L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l-~~L~~L~l~~~~--~~~~~~l 344 (512)
..+..+..+.+ |++|++++|.+..... ......+..+ ++|+.|++++|. ......+
T Consensus 96 ~~~~~~~~l~~~~~L~~L~ls~~~~~~~~~------------------~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~~ 157 (319)
T cd00116 96 DGCGVLESLLRSSSLQELKLNNNGLGDRGL------------------RLLAKGLKDLPPALEKLVLGRNRLEGASCEAL 157 (319)
T ss_pred hHHHHHHHHhccCcccEEEeeCCccchHHH------------------HHHHHHHHhCCCCceEEEcCCCcCCchHHHHH
Confidence 33444444444 8888887776542000 1222334455 677777777773 1122344
Q ss_pred HHhccCCCCCcEEEeccCCCCC--Cccc--CcCCCCCCccEEEEecccCCCCC----CCCCCCCcccceeEEEcccccCc
Q 010381 345 SKSLCKLQKLEWLKLVNESKPS--RMVL--SEYQFPPSLTHLSLSNTELKEDP----MPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 345 ~~~l~~l~~L~~L~l~~~~~p~--L~~l--~~~~lp~~L~~L~L~~~~~~~~~----~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
+..+..+++|+.|++++|.+.. +..+ .+..+ ++|+.|++++|.+.+.. ...+..+++|++|++++|.+.+.
T Consensus 158 ~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~-~~L~~L~L~~n~i~~~~~~~l~~~~~~~~~L~~L~ls~n~l~~~ 236 (319)
T cd00116 158 AKALRANRDLKELNLANNGIGDAGIRALAEGLKAN-CNLEVLDLNNNGLTDEGASALAETLASLKSLEVLNLGDNNLTDA 236 (319)
T ss_pred HHHHHhCCCcCEEECcCCCCchHHHHHHHHHHHhC-CCCCEEeccCCccChHHHHHHHHHhcccCCCCEEecCCCcCchH
Confidence 5556666777777777765531 0000 12334 57777777777665322 22345667777777777766542
Q ss_pred eeeee--C-CCCCccccEEEecCCCCc----ceeeeCCCCccccceeeecCCcccCC----CCcccCCC-CCCcEEEccC
Q 010381 417 KLACV--G-SGGFPELKVLHLKSMYWL----DEWTMGAGAMPKLESLIVDPCAYLRK----LPEELWCI-QSLRKLDLHW 484 (512)
Q Consensus 417 ~~~~~--~-~~~~~~L~~L~L~~~~~l----~~l~~~~~~l~~L~~L~l~~c~~l~~----lp~~~~~l-~~L~~L~l~~ 484 (512)
.+... . ....+.|+.|++++|... ..+......+++|+.+++++|..... +...+... +.|+++++.+
T Consensus 237 ~~~~l~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~ 316 (319)
T cd00116 237 GAAALASALLSPNISLLTLSLSCNDITDDGAKDLAEVLAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKD 316 (319)
T ss_pred HHHHHHHHHhccCCCceEEEccCCCCCcHHHHHHHHHHhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCC
Confidence 22111 0 112367777777775432 12233344557777777777765432 33334444 6777777776
Q ss_pred Ch
Q 010381 485 PQ 486 (512)
Q Consensus 485 ~~ 486 (512)
+|
T Consensus 317 ~~ 318 (319)
T cd00116 317 DS 318 (319)
T ss_pred CC
Confidence 65
No 23
>cd00116 LRR_RI Leucine-rich repeats (LRRs), ribonuclease inhibitor (RI)-like subfamily. LRRs are 20-29 residue sequence motifs present in many proteins that participate in protein-protein interactions and have different functions and cellular locations. LRRs correspond to structural units consisting of a beta strand (LxxLxLxxN/CxL conserved pattern) and an alpha helix. This alignment contains 12 strands corresponding to 11 full repeats, consistent with the extent observed in the subfamily acting as Ran GTPase Activating Proteins (RanGAP1).
Probab=99.49 E-value=6.8e-15 Score=144.08 Aligned_cols=262 Identities=19% Similarity=0.119 Sum_probs=147.8
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-------cCccccCccccCeeeecCCCCc-ccChh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-------FPPGLENLFLLKYLKLNIPSLK-CLPSQ 252 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-------lp~~l~~l~~L~~L~l~~~~i~-~lp~~ 252 (512)
...+++.|.+.++.........+.......+.++.|+++++.+.. ++..+..+++|++|++++|.+. ..+..
T Consensus 21 ~l~~L~~l~l~~~~l~~~~~~~i~~~l~~~~~l~~l~l~~~~~~~~~~~~~~~~~~l~~~~~L~~L~l~~~~~~~~~~~~ 100 (319)
T cd00116 21 KLLCLQVLRLEGNTLGEEAAKALASALRPQPSLKELCLSLNETGRIPRGLQSLLQGLTKGCGLQELDLSDNALGPDGCGV 100 (319)
T ss_pred HHhhccEEeecCCCCcHHHHHHHHHHHhhCCCceEEeccccccCCcchHHHHHHHHHHhcCceeEEEccCCCCChhHHHH
Confidence 455577888877776432223443333677778888888776542 3345666778888888888776 44445
Q ss_pred hhcCcC---CcEEecCCccccc-----cchhhhcc-ccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcC
Q 010381 253 LCTLLN---LQTLQMPSSYIDQ-----SPEDIWMM-QKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILG 323 (512)
Q Consensus 253 ~~~l~~---L~~L~L~~~~~~~-----lp~~i~~l-~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~ 323 (512)
+..+.+ |++|++++|.+.. +...+..+ ++|+.|++++|.+.+..+ ......+.
T Consensus 101 ~~~l~~~~~L~~L~ls~~~~~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~------------------~~~~~~~~ 162 (319)
T cd00116 101 LESLLRSSSLQELKLNNNGLGDRGLRLLAKGLKDLPPALEKLVLGRNRLEGASC------------------EALAKALR 162 (319)
T ss_pred HHHHhccCcccEEEeeCCccchHHHHHHHHHHHhCCCCceEEEcCCCcCCchHH------------------HHHHHHHH
Confidence 555554 8888888886642 23345566 788888888887753111 12233344
Q ss_pred CCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCC--ccc--CcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 324 RLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSR--MVL--SEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 324 ~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L--~~l--~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
.+++|++|++++|. ......++..+..+++|+.|++++|.+... ..+ .+..+ ++|+.|++++|.+.+..+..+
T Consensus 163 ~~~~L~~L~l~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~~~~~-~~L~~L~ls~n~l~~~~~~~l 241 (319)
T cd00116 163 ANRDLKELNLANNGIGDAGIRALAEGLKANCNLEVLDLNNNGLTDEGASALAETLASL-KSLEVLNLGDNNLTDAGAAAL 241 (319)
T ss_pred hCCCcCEEECcCCCCchHHHHHHHHHHHhCCCCCEEeccCCccChHHHHHHHHHhccc-CCCCEEecCCCcCchHHHHHH
Confidence 45556666665552 111123344444556666666666544210 000 33445 677777777776654222121
Q ss_pred C-----CCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCCCcce----eeeCCCCc-cccceeeecCCc
Q 010381 398 E-----KLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMYWLDE----WTMGAGAM-PKLESLIVDPCA 462 (512)
Q Consensus 398 ~-----~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~----l~~~~~~l-~~L~~L~l~~c~ 462 (512)
. ..+.|+.|++++|.+.+... ... ...+++|+.++++++..-.. +....... +.|+++++.+++
T Consensus 242 ~~~~~~~~~~L~~L~l~~n~i~~~~~~~l~~~-~~~~~~L~~l~l~~N~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 318 (319)
T cd00116 242 ASALLSPNISLLTLSLSCNDITDDGAKDLAEV-LAEKESLLELDLRGNKFGEEGAQLLAESLLEPGNELESLWVKDDS 318 (319)
T ss_pred HHHHhccCCCceEEEccCCCCCcHHHHHHHHH-HhcCCCccEEECCCCCCcHHHHHHHHHHHhhcCCchhhcccCCCC
Confidence 1 23677888887777653211 111 34457788888877533321 22233444 677887777664
No 24
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.48 E-value=3.9e-15 Score=139.10 Aligned_cols=267 Identities=19% Similarity=0.172 Sum_probs=113.9
Q ss_pred EEEEecCCcCCccCc-cccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCC-ccccccchh-hhccccCceeecCC
Q 010381 214 RVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPS-SYIDQSPED-IWMMQKLMHLNFGS 289 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~-~~~~~lp~~-i~~l~~L~~L~l~~ 289 (512)
..++|..|.|+.+|+ .|+.+++||.|+|++|.|+ --|..+..+.+|-.|-+.+ |+|+.+|.. +++|..|+.|.+.-
T Consensus 70 veirLdqN~I~~iP~~aF~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNa 149 (498)
T KOG4237|consen 70 VEIRLDQNQISSIPPGAFKTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNA 149 (498)
T ss_pred eEEEeccCCcccCChhhccchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcCh
Confidence 344555555554442 3455555555555555555 3344455555555444444 355555533 44555555555544
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCch-hcCCCCCCCeEEEeccc----------hhhhhhHHHhccCCCCCcEE
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTPD-ILGRLPNIQTLRISGDL----------SYYQSRVSKSLCKLQKLEWL 357 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~-~l~~l~~L~~L~l~~~~----------~~~~~~l~~~l~~l~~L~~L 357 (512)
|++.-.....+..|++|..|.+.. .+..++. .+..+..++.+++..+. .......|..++........
T Consensus 150 n~i~Cir~~al~dL~~l~lLslyDn~~q~i~~~tf~~l~~i~tlhlA~np~icdCnL~wla~~~a~~~ietsgarc~~p~ 229 (498)
T KOG4237|consen 150 NHINCIRQDALRDLPSLSLLSLYDNKIQSICKGTFQGLAAIKTLHLAQNPFICDCNLPWLADDLAMNPIETSGARCVSPY 229 (498)
T ss_pred hhhcchhHHHHHHhhhcchhcccchhhhhhccccccchhccchHhhhcCccccccccchhhhHHhhchhhcccceecchH
Confidence 444333333344444444444432 1122222 34556666666655442 01122223333333333333
Q ss_pred EeccCCCCCCcccCcCCCCCCccEE--EE-ecccCCC-CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEE
Q 010381 358 KLVNESKPSRMVLSEYQFPPSLTHL--SL-SNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433 (512)
Q Consensus 358 ~l~~~~~p~L~~l~~~~lp~~L~~L--~L-~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 433 (512)
.+..+++..+. ..++-..++.+ .+ +.|.... .+...|..+++|++|++++|.++...... +.+...++.|.
T Consensus 230 rl~~~Ri~q~~---a~kf~c~~esl~s~~~~~d~~d~~cP~~cf~~L~~L~~lnlsnN~i~~i~~~a--Fe~~a~l~eL~ 304 (498)
T KOG4237|consen 230 RLYYKRINQED---ARKFLCSLESLPSRLSSEDFPDSICPAKCFKKLPNLRKLNLSNNKITRIEDGA--FEGAAELQELY 304 (498)
T ss_pred HHHHHHhcccc---hhhhhhhHHhHHHhhccccCcCCcChHHHHhhcccceEeccCCCccchhhhhh--hcchhhhhhhh
Confidence 33321111000 00000011111 00 1111111 11122455555555555555554433222 44555555555
Q ss_pred ecCCCCcceee-eCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 434 LKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 434 L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|.. +.++.+. ..+.++..|+.|++++|....--|..+..+.+|.+|.+-.||
T Consensus 305 L~~-N~l~~v~~~~f~~ls~L~tL~L~~N~it~~~~~aF~~~~~l~~l~l~~Np 357 (498)
T KOG4237|consen 305 LTR-NKLEFVSSGMFQGLSGLKTLSLYDNQITTVAPGAFQTLFSLSTLNLLSNP 357 (498)
T ss_pred cCc-chHHHHHHHhhhccccceeeeecCCeeEEEecccccccceeeeeehccCc
Confidence 555 3444332 223445555555555555444445555555555555555544
No 25
>KOG4237 consensus Extracellular matrix protein slit, contains leucine-rich and EGF-like repeats [Extracellular structures; Signal transduction mechanisms]
Probab=99.36 E-value=1.9e-14 Score=134.56 Aligned_cols=85 Identities=24% Similarity=0.245 Sum_probs=40.0
Q ss_pred cCCCeeEEEEecCCcCC-ccCccccCccccCeeeecC-CCCcccChh-hhcCcCCcEEecCCccccccc-hhhhccccCc
Q 010381 208 KKFKYLRVLDLGSAVLD-QFPPGLENLFLLKYLKLNI-PSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLM 283 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~-~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~ 283 (512)
+.+++||+|||+.|.|+ .-|+.|..+..|-.|-+.+ |+|+.+|.. +++|..|+-|.+.-|.+.-++ ..+..+++|.
T Consensus 88 ~~l~~LRrLdLS~N~Is~I~p~AF~GL~~l~~Lvlyg~NkI~~l~k~~F~gL~slqrLllNan~i~Cir~~al~dL~~l~ 167 (498)
T KOG4237|consen 88 KTLHRLRRLDLSKNNISFIAPDAFKGLASLLSLVLYGNNKITDLPKGAFGGLSSLQRLLLNANHINCIRQDALRDLPSLS 167 (498)
T ss_pred cchhhhceecccccchhhcChHhhhhhHhhhHHHhhcCCchhhhhhhHhhhHHHHHHHhcChhhhcchhHHHHHHhhhcc
Confidence 55555555555555554 3344455555444444333 455544443 444555555554444443333 2244455555
Q ss_pred eeecCCccc
Q 010381 284 HLNFGSITL 292 (512)
Q Consensus 284 ~L~l~~~~~ 292 (512)
.|.+.+|.+
T Consensus 168 lLslyDn~~ 176 (498)
T KOG4237|consen 168 LLSLYDNKI 176 (498)
T ss_pred hhcccchhh
Confidence 554444444
No 26
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=99.11 E-value=3.6e-11 Score=114.39 Aligned_cols=236 Identities=19% Similarity=0.105 Sum_probs=157.4
Q ss_pred ccCccccCeeeecCCCCcccCh--hhhcCcCCcEEecCCccc---cccchhhhccccCceeecCCcccCCCCCCCCCCCC
Q 010381 230 LENLFLLKYLKLNIPSLKCLPS--QLCTLLNLQTLQMPSSYI---DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK 304 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~---~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 304 (512)
-.++++|+...|+++.+...+. ....|++++.|||+.|-+ ..+-..+..+|+|+.|+++.|.+.- |.
T Consensus 117 Qsn~kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~nw~~v~~i~eqLp~Le~LNls~Nrl~~--~~------ 188 (505)
T KOG3207|consen 117 QSNLKKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFHNWFPVLKIAEQLPSLENLNLSSNRLSN--FI------ 188 (505)
T ss_pred hhhHHhhhheeecCccccccchhhhhhhCCcceeecchhhhHHhHHHHHHHHHhcccchhcccccccccC--Cc------
Confidence 3567788888888888776653 567889999999999844 4444556789999999999988742 21
Q ss_pred CCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEE
Q 010381 305 NLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSL 384 (512)
Q Consensus 305 ~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L 384 (512)
.... -..+++|++|.++.|. -....+...+..+++|+.|++..|..--.+.-...-+ ..|+.|+|
T Consensus 189 -----------~s~~--~~~l~~lK~L~l~~CG-ls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~-~~L~~LdL 253 (505)
T KOG3207|consen 189 -----------SSNT--TLLLSHLKQLVLNSCG-LSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKIL-QTLQELDL 253 (505)
T ss_pred -----------cccc--hhhhhhhheEEeccCC-CCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhh-hHHhhccc
Confidence 0011 1257788899999985 2355566667788999999999973210000012233 88999999
Q ss_pred ecccCCCCC-CCCCCCCcccceeEEEcccccCceeeee----CCCCCccccEEEecCCCCcceeee--CCCCccccceee
Q 010381 385 SNTELKEDP-MPTLEKLPYVQVLKLKQNSYLGRKLACV----GSGGFPELKVLHLKSMYWLDEWTM--GAGAMPKLESLI 457 (512)
Q Consensus 385 ~~~~~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~l~~l~~--~~~~l~~L~~L~ 457 (512)
++|.+.... ....+.+|.|..|+++.+.+........ ....|++|++|.+..+ .+.+|+. .+..+++|+.|.
T Consensus 254 s~N~li~~~~~~~~~~l~~L~~Lnls~tgi~si~~~d~~s~~kt~~f~kL~~L~i~~N-~I~~w~sl~~l~~l~nlk~l~ 332 (505)
T KOG3207|consen 254 SNNNLIDFDQGYKVGTLPGLNQLNLSSTGIASIAEPDVESLDKTHTFPKLEYLNISEN-NIRDWRSLNHLRTLENLKHLR 332 (505)
T ss_pred cCCcccccccccccccccchhhhhccccCcchhcCCCccchhhhcccccceeeecccC-ccccccccchhhccchhhhhh
Confidence 999875432 2456889999999999888754332210 0356899999999994 5556653 345678888888
Q ss_pred ecCCcccCCCC----cccCCCCCCcEEEccCChHHH
Q 010381 458 VDPCAYLRKLP----EELWCIQSLRKLDLHWPQTEL 489 (512)
Q Consensus 458 l~~c~~l~~lp----~~~~~l~~L~~L~l~~~~~~~ 489 (512)
+..++..++-- ..+..+++|..|+=.+|.++-
T Consensus 333 ~~~n~ln~e~~~a~~~VIAr~~~l~~LN~~di~p~e 368 (505)
T KOG3207|consen 333 ITLNYLNKETDTAKLLVIARISQLVKLNDVDISPNE 368 (505)
T ss_pred cccccccccccceeEEeeeehhhhhhhcccccChHH
Confidence 88777544321 134455666655555554333
No 27
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=99.09 E-value=1.4e-10 Score=100.67 Aligned_cols=84 Identities=23% Similarity=0.240 Sum_probs=22.0
Q ss_pred cCCCeeEEEEecCCcCCccCcccc-CccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhh-ccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLE-NLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIW-MMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~-~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~-~l~~L~~L 285 (512)
.+...+|.|+|+++.|+.+. .++ .+.+|+.|++++|.|+.++ .+..+++|++|++++|.++.+++.+. .+++|++|
T Consensus 16 ~n~~~~~~L~L~~n~I~~Ie-~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L~~L 93 (175)
T PF14580_consen 16 NNPVKLRELNLRGNQISTIE-NLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNLQEL 93 (175)
T ss_dssp ---------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT--EE
T ss_pred cccccccccccccccccccc-chhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcCCEE
Confidence 44455666777776666542 344 4566777777777766664 45566777777777776666654443 56677777
Q ss_pred ecCCcccC
Q 010381 286 NFGSITLP 293 (512)
Q Consensus 286 ~l~~~~~~ 293 (512)
++++|.+.
T Consensus 94 ~L~~N~I~ 101 (175)
T PF14580_consen 94 YLSNNKIS 101 (175)
T ss_dssp E-TTS---
T ss_pred ECcCCcCC
Confidence 77766653
No 28
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=99.04 E-value=2.7e-10 Score=114.95 Aligned_cols=191 Identities=24% Similarity=0.247 Sum_probs=125.0
Q ss_pred EEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCcc-ccCeeeecCCCCcccChhhhcCcCCcEEecC
Q 010381 187 SFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLF-LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMP 265 (512)
Q Consensus 187 ~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~ 265 (512)
.+....+.... ....+ ...+.++.|++.++.++.+|.....+. +|+.|++++|.+..+|..++.+++|+.|++.
T Consensus 97 ~l~~~~~~~~~----~~~~~-~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~ 171 (394)
T COG4886 97 SLDLNLNRLRS----NISEL-LELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLS 171 (394)
T ss_pred eeecccccccc----Cchhh-hcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccC
Confidence 45555555421 22444 566789999999999998888888885 9999999999999988888999999999999
Q ss_pred CccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-CccCchhcCCCCCCCeEEEeccchhhhhhH
Q 010381 266 SSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-ISCTPDILGRLPNIQTLRISGDLSYYQSRV 344 (512)
Q Consensus 266 ~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l 344 (512)
+|.+..+|...+.+++|+.|++++|.+. .+|..+..+..|+.+.+.++ +...+..+..+.++..+.+.++ ....+
T Consensus 172 ~N~l~~l~~~~~~~~~L~~L~ls~N~i~-~l~~~~~~~~~L~~l~~~~N~~~~~~~~~~~~~~l~~l~l~~n---~~~~~ 247 (394)
T COG4886 172 FNDLSDLPKLLSNLSNLNNLDLSGNKIS-DLPPEIELLSALEELDLSNNSIIELLSSLSNLKNLSGLELSNN---KLEDL 247 (394)
T ss_pred CchhhhhhhhhhhhhhhhheeccCCccc-cCchhhhhhhhhhhhhhcCCcceecchhhhhcccccccccCCc---eeeec
Confidence 9999999887778999999999998884 56655555555666666643 3445555555555555554444 22222
Q ss_pred HHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccC
Q 010381 345 SKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 345 ~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~ 389 (512)
+..++.+++++.|+++.|.+..+. .++.+ .+++.|+++++.+
T Consensus 248 ~~~~~~l~~l~~L~~s~n~i~~i~--~~~~~-~~l~~L~~s~n~~ 289 (394)
T COG4886 248 PESIGNLSNLETLDLSNNQISSIS--SLGSL-TNLRELDLSGNSL 289 (394)
T ss_pred cchhccccccceeccccccccccc--ccccc-CccCEEeccCccc
Confidence 344444444444444444433222 12333 4444444444443
No 29
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=99.00 E-value=1.8e-11 Score=119.98 Aligned_cols=163 Identities=21% Similarity=0.324 Sum_probs=75.5
Q ss_pred EEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCC
Q 010381 216 LDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAP 295 (512)
Q Consensus 216 L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~ 295 (512)
.|++.|.+..+|..++.+..|..+.++.|.+..+|..++++..|.+|||+.|.+..+|..++.|+ |+.|-+++|++. .
T Consensus 80 aDlsrNR~~elp~~~~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkvli~sNNkl~-~ 157 (722)
T KOG0532|consen 80 ADLSRNRFSELPEEACAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKVLIVSNNKLT-S 157 (722)
T ss_pred hhccccccccCchHHHHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-ceeEEEecCccc-c
Confidence 34444444444444444444444444444444444444444444444444444444444444443 444444444432 3
Q ss_pred CCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---CCCcccC
Q 010381 296 PTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK---PSRMVLS 371 (512)
Q Consensus 296 ~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~---p~L~~l~ 371 (512)
+|..++.+..|..++.+. .+..++..++.+.+|+.|.+..+ ....+|..+..+ .|..||+++|.+ |- .
T Consensus 158 lp~~ig~~~tl~~ld~s~nei~slpsql~~l~slr~l~vrRn---~l~~lp~El~~L-pLi~lDfScNkis~iPv----~ 229 (722)
T KOG0532|consen 158 LPEEIGLLPTLAHLDVSKNEIQSLPSQLGYLTSLRDLNVRRN---HLEDLPEELCSL-PLIRLDFSCNKISYLPV----D 229 (722)
T ss_pred CCcccccchhHHHhhhhhhhhhhchHHhhhHHHHHHHHHhhh---hhhhCCHHHhCC-ceeeeecccCceeecch----h
Confidence 444444444444444432 22444445555555555555444 344444444433 455555555432 33 4
Q ss_pred cCCCCCCccEEEEecccC
Q 010381 372 EYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 372 ~~~lp~~L~~L~L~~~~~ 389 (512)
+.++ ..|++|.|.+|.+
T Consensus 230 fr~m-~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 230 FRKM-RHLQVLQLENNPL 246 (722)
T ss_pred hhhh-hhheeeeeccCCC
Confidence 4445 5555555555554
No 30
>KOG3207 consensus Beta-tubulin folding cofactor E [Posttranslational modification, protein turnover, chaperones]
Probab=98.99 E-value=1.2e-10 Score=110.98 Aligned_cols=130 Identities=17% Similarity=0.061 Sum_probs=93.9
Q ss_pred CceeEEEEEecCCccccC--CC-CCCCeeEEEEecCCcchhhhcc-hhHHhcCCCeeEEEEecCCcCCccCcc--ccCcc
Q 010381 161 ANVKRCFILKDLIDFFPS--EY-SDMYLQSFLNHSSESDRLARID-CENFCKKFKYLRVLDLGSAVLDQFPPG--LENLF 234 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~--~~-~~~~Lr~L~l~~~~~~~~~~~~-~~~~~~~~~~L~~L~l~~~~l~~lp~~--l~~l~ 234 (512)
+++|.+++.......... .. .++++|.|++++|-+. .+. +..++..+++|+.|+++.|.+....++ -..++
T Consensus 121 kkL~~IsLdn~~V~~~~~~~~~k~~~~v~~LdLS~NL~~---nw~~v~~i~eqLp~Le~LNls~Nrl~~~~~s~~~~~l~ 197 (505)
T KOG3207|consen 121 KKLREISLDNYRVEDAGIEEYSKILPNVRDLDLSRNLFH---NWFPVLKIAEQLPSLENLNLSSNRLSNFISSNTTLLLS 197 (505)
T ss_pred HhhhheeecCccccccchhhhhhhCCcceeecchhhhHH---hHHHHHHHHHhcccchhcccccccccCCccccchhhhh
Confidence 778888998444444333 22 8999999999999876 333 377778999999999999987622222 23678
Q ss_pred ccCeeeecCCCCc--ccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccC
Q 010381 235 LLKYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 235 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~ 293 (512)
+|+.|.++.|.++ ++-.....+++|+.|+|.+| .+..-.....-+..|+.|||++|.+.
T Consensus 198 ~lK~L~l~~CGls~k~V~~~~~~fPsl~~L~L~~N~~~~~~~~~~~i~~~L~~LdLs~N~li 259 (505)
T KOG3207|consen 198 HLKQLVLNSCGLSWKDVQWILLTFPSLEVLYLEANEIILIKATSTKILQTLQELDLSNNNLI 259 (505)
T ss_pred hhheEEeccCCCCHHHHHHHHHhCCcHHHhhhhcccccceecchhhhhhHHhhccccCCccc
Confidence 9999999999888 44445567899999999988 33222223445678899999988764
No 31
>COG4886 Leucine-rich repeat (LRR) protein [Function unknown]
Probab=98.93 E-value=8.1e-10 Score=111.45 Aligned_cols=192 Identities=26% Similarity=0.276 Sum_probs=143.2
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCc-CCcEEecCCccccccchhhhccccCceeecCCcccC
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLL-NLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~-~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~ 293 (512)
.+++..+.+..-+..+..+..+..|++.++.++++|...+.+. +|+.|+++++.+..+|..++.+++|+.|++++|.+.
T Consensus 97 ~l~~~~~~~~~~~~~~~~~~~l~~L~l~~n~i~~i~~~~~~~~~nL~~L~l~~N~i~~l~~~~~~l~~L~~L~l~~N~l~ 176 (394)
T COG4886 97 SLDLNLNRLRSNISELLELTNLTSLDLDNNNITDIPPLIGLLKSNLKELDLSDNKIESLPSPLRNLPNLKNLDLSFNDLS 176 (394)
T ss_pred eeeccccccccCchhhhcccceeEEecCCcccccCccccccchhhcccccccccchhhhhhhhhccccccccccCCchhh
Confidence 5777777775444556667889999999999999998888885 999999999999999888999999999999999985
Q ss_pred CCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC---CCCcc
Q 010381 294 APPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK---PSRMV 369 (512)
Q Consensus 294 ~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~---p~L~~ 369 (512)
.+|...+.++.|+.+++++ .+..++..+.....|++|.+.++ .....+..+.++.++..+.+..|.+ +.
T Consensus 177 -~l~~~~~~~~~L~~L~ls~N~i~~l~~~~~~~~~L~~l~~~~N---~~~~~~~~~~~~~~l~~l~l~~n~~~~~~~--- 249 (394)
T COG4886 177 -DLPKLLSNLSNLNNLDLSGNKISDLPPEIELLSALEELDLSNN---SIIELLSSLSNLKNLSGLELSNNKLEDLPE--- 249 (394)
T ss_pred -hhhhhhhhhhhhhheeccCCccccCchhhhhhhhhhhhhhcCC---cceecchhhhhcccccccccCCceeeeccc---
Confidence 5666666778888888875 43555555556666888888776 2445555666677777777666544 23
Q ss_pred cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 370 l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
.+..+ ++++.|++++|.+..... ++.+.+++.|+++++.+....
T Consensus 250 -~~~~l-~~l~~L~~s~n~i~~i~~--~~~~~~l~~L~~s~n~~~~~~ 293 (394)
T COG4886 250 -SIGNL-SNLETLDLSNNQISSISS--LGSLTNLRELDLSGNSLSNAL 293 (394)
T ss_pred -hhccc-cccceecccccccccccc--ccccCccCEEeccCccccccc
Confidence 55666 778888888877654332 777778888888777665443
No 32
>PF14580 LRR_9: Leucine-rich repeat; PDB: 2JE1_D 2JE0_A 2JQD_A.
Probab=98.93 E-value=1.1e-09 Score=95.17 Aligned_cols=125 Identities=23% Similarity=0.262 Sum_probs=49.5
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhh-hcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQL-CTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L 259 (512)
++.++|.|.+.++.+. .++.+...+.+|++|++++|.++.+. .+..+++|+.|++++|.|+.++..+ ..+++|
T Consensus 17 n~~~~~~L~L~~n~I~-----~Ie~L~~~l~~L~~L~Ls~N~I~~l~-~l~~L~~L~~L~L~~N~I~~i~~~l~~~lp~L 90 (175)
T PF14580_consen 17 NPVKLRELNLRGNQIS-----TIENLGATLDKLEVLDLSNNQITKLE-GLPGLPRLKTLDLSNNRISSISEGLDKNLPNL 90 (175)
T ss_dssp ------------------------S--TT-TT--EEE-TTS--S--T-T----TT--EEE--SS---S-CHHHHHH-TT-
T ss_pred cccccccccccccccc-----cccchhhhhcCCCEEECCCCCCcccc-CccChhhhhhcccCCCCCCccccchHHhCCcC
Confidence 5567788888888876 34555235788889999999888764 4777888999999999988886655 368899
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcccCCCCCC----CCCCCCCCCeeecC
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPTN----YSSSLKNLIFVSAL 312 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~----~~~~l~~L~~l~l~ 312 (512)
++|++++|.+..+. ..+..+++|++|++.+|.+... +. -+..+++|+.||-.
T Consensus 91 ~~L~L~~N~I~~l~~l~~L~~l~~L~~L~L~~NPv~~~-~~YR~~vi~~lP~Lk~LD~~ 148 (175)
T PF14580_consen 91 QELYLSNNKISDLNELEPLSSLPKLRVLSLEGNPVCEK-KNYRLFVIYKLPSLKVLDGQ 148 (175)
T ss_dssp -EEE-TTS---SCCCCGGGGG-TT--EEE-TT-GGGGS-TTHHHHHHHH-TT-SEETTE
T ss_pred CEEECcCCcCCChHHhHHHHcCCCcceeeccCCcccch-hhHHHHHHHHcChhheeCCE
Confidence 99999988775543 3467888899999988887642 21 23456777777653
No 33
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.89 E-value=3.5e-10 Score=104.97 Aligned_cols=244 Identities=17% Similarity=0.167 Sum_probs=120.8
Q ss_pred cCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCC---CCc-ccChh-------hhcCcCCcEEecCCcccc-
Q 010381 208 KKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIP---SLK-CLPSQ-------LCTLLNLQTLQMPSSYID- 270 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~---~i~-~lp~~-------~~~l~~L~~L~L~~~~~~- 270 (512)
..+..+..++|++|.+. .+-..+.+.++|+.-++++- +.. ++|.. +-.+++|++|||+.|-++
T Consensus 27 ~~~~s~~~l~lsgnt~G~EAa~~i~~~L~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 27 EPMDSLTKLDLSGNTFGTEAARAIAKVLASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred cccCceEEEeccCCchhHHHHHHHHHHHhhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 44555555555555543 22233444445555555441 111 33332 334567777777777442
Q ss_pred -ccc---hhhhccccCceeecCCcccCCCCCCCCCCCC-CCCeeecCCCCccCchhcCCCCCCCeEEEeccc--hhhhhh
Q 010381 271 -QSP---EDIWMMQKLMHLNFGSITLPAPPTNYSSSLK-NLIFVSALHPISCTPDILGRLPNIQTLRISGDL--SYYQSR 343 (512)
Q Consensus 271 -~lp---~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~ 343 (512)
.++ .-+.++..|++|++.+|.+. |.+=+.+. .|..+. .....+.-++|+++....|+ +.....
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg---~~ag~~l~~al~~l~-------~~kk~~~~~~Lrv~i~~rNrlen~ga~~ 176 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLG---PEAGGRLGRALFELA-------VNKKAASKPKLRVFICGRNRLENGGATA 176 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCC---hhHHHHHHHHHHHHH-------HHhccCCCcceEEEEeeccccccccHHH
Confidence 222 33566777777777777653 11100000 011111 11123445566666666654 223334
Q ss_pred HHHhccCCCCCcEEEeccCCCC-C-Cccc--CcCCCCCCccEEEEecccCCCC----CCCCCCCCcccceeEEEcccccC
Q 010381 344 VSKSLCKLQKLEWLKLVNESKP-S-RMVL--SEYQFPPSLTHLSLSNTELKED----PMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 344 l~~~l~~l~~L~~L~l~~~~~p-~-L~~l--~~~~lp~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
+...+...+.|+.+.++.|.+- . ...+ .+..+ ++|+.|+|..|.++.. ....+..+++|++|++++|.+..
T Consensus 177 ~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~-~~LevLdl~DNtft~egs~~LakaL~s~~~L~El~l~dcll~~ 255 (382)
T KOG1909|consen 177 LAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHC-PHLEVLDLRDNTFTLEGSVALAKALSSWPHLRELNLGDCLLEN 255 (382)
T ss_pred HHHHHHhccccceEEEecccccCchhHHHHHHHHhC-CcceeeecccchhhhHHHHHHHHHhcccchheeeccccccccc
Confidence 4455556666777777666552 1 0000 33455 6666666666655432 11234455667777777666544
Q ss_pred ceee----eeCCCCCccccEEEecCCCCcc----eeeeCCCCccccceeeecCCcc
Q 010381 416 RKLA----CVGSGGFPELKVLHLKSMYWLD----EWTMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 416 ~~~~----~~~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~ 463 (512)
..-. .. ....|+|++|.+.+|.... .+...+...|.|+.|++++|..
T Consensus 256 ~Ga~a~~~al-~~~~p~L~vl~l~gNeIt~da~~~la~~~~ek~dL~kLnLngN~l 310 (382)
T KOG1909|consen 256 EGAIAFVDAL-KESAPSLEVLELAGNEITRDAALALAACMAEKPDLEKLNLNGNRL 310 (382)
T ss_pred ccHHHHHHHH-hccCCCCceeccCcchhHHHHHHHHHHHHhcchhhHHhcCCcccc
Confidence 3211 11 2346777777777753322 1223344567777777777764
No 34
>KOG1909 consensus Ran GTPase-activating protein [RNA processing and modification; Nuclear structure; Signal transduction mechanisms]
Probab=98.88 E-value=4.6e-10 Score=104.15 Aligned_cols=237 Identities=18% Similarity=0.163 Sum_probs=157.2
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCc---CC-ccCc-------cccCccccCeeeecCCCCc-
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAV---LD-QFPP-------GLENLFLLKYLKLNIPSLK- 247 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~---l~-~lp~-------~l~~l~~L~~L~l~~~~i~- 247 (512)
.+..+..+.+++|.+....-..+ +.+ .+.+.||..+++.-- .. .+|+ .+-.+++|++|+||.|-+.
T Consensus 28 ~~~s~~~l~lsgnt~G~EAa~~i~~~L-~~~~~L~~v~~sd~ftGR~~~Ei~e~L~~l~~aL~~~~~L~~ldLSDNA~G~ 106 (382)
T KOG1909|consen 28 PMDSLTKLDLSGNTFGTEAARAIAKVL-ASKKELREVNLSDMFTGRLKDEIPEALKMLSKALLGCPKLQKLDLSDNAFGP 106 (382)
T ss_pred ccCceEEEeccCCchhHHHHHHHHHHH-hhcccceeeehHhhhcCCcHHHHHHHHHHHHHHHhcCCceeEeeccccccCc
Confidence 67788899999998875445566 455 888899999998643 11 4554 3456789999999999776
Q ss_pred ccCh----hhhcCcCCcEEecCCccccccch--------------hhhccccCceeecCCcccCCCCCCCCCCCCCCCee
Q 010381 248 CLPS----QLCTLLNLQTLQMPSSYIDQSPE--------------DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFV 309 (512)
Q Consensus 248 ~lp~----~~~~l~~L~~L~L~~~~~~~lp~--------------~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l 309 (512)
.-+. -+..+..|++|.|.+|.++.... .+..-++|+++..+.|.+.. .+.
T Consensus 107 ~g~~~l~~ll~s~~~L~eL~L~N~Glg~~ag~~l~~al~~l~~~kk~~~~~~Lrv~i~~rNrlen-~ga----------- 174 (382)
T KOG1909|consen 107 KGIRGLEELLSSCTDLEELYLNNCGLGPEAGGRLGRALFELAVNKKAASKPKLRVFICGRNRLEN-GGA----------- 174 (382)
T ss_pred cchHHHHHHHHhccCHHHHhhhcCCCChhHHHHHHHHHHHHHHHhccCCCcceEEEEeecccccc-ccH-----------
Confidence 3333 36678999999999997753321 12334566666666665421 010
Q ss_pred ecCCCCccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCCccc----CcCCCCCCccEEE
Q 010381 310 SALHPISCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL----SEYQFPPSLTHLS 383 (512)
Q Consensus 310 ~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l----~~~~lp~~L~~L~ 383 (512)
..+...+...+.|+.+.+..+. ......+...+..+++|+.|+|.+|.+..--.. .+..+ ++|+.|.
T Consensus 175 ------~~~A~~~~~~~~leevr~~qN~I~~eG~~al~eal~~~~~LevLdl~DNtft~egs~~LakaL~s~-~~L~El~ 247 (382)
T KOG1909|consen 175 ------TALAEAFQSHPTLEEVRLSQNGIRPEGVTALAEALEHCPHLEVLDLRDNTFTLEGSVALAKALSSW-PHLRELN 247 (382)
T ss_pred ------HHHHHHHHhccccceEEEecccccCchhHHHHHHHHhCCcceeeecccchhhhHHHHHHHHHhccc-chheeec
Confidence 2334456667788888887764 223345667788888999999988876311110 23445 7899999
Q ss_pred EecccCCCCCCCCC-----CCCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCC
Q 010381 384 LSNTELKEDPMPTL-----EKLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 384 L~~~~~~~~~~~~l-----~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~ 438 (512)
++.|.+.......+ ...|+|++|.+.+|.++.... ... ....|.|+.|+|++|.
T Consensus 248 l~dcll~~~Ga~a~~~al~~~~p~L~vl~l~gNeIt~da~~~la~~-~~ek~dL~kLnLngN~ 309 (382)
T KOG1909|consen 248 LGDCLLENEGAIAFVDALKESAPSLEVLELAGNEITRDAALALAAC-MAEKPDLEKLNLNGNR 309 (382)
T ss_pred ccccccccccHHHHHHHHhccCCCCceeccCcchhHHHHHHHHHHH-HhcchhhHHhcCCccc
Confidence 99998765433332 347889999999888754321 111 3457899999999964
No 35
>KOG0532 consensus Leucine-rich repeat (LRR) protein, contains calponin homology domain [Cytoskeleton]
Probab=98.88 E-value=5.7e-11 Score=116.53 Aligned_cols=170 Identities=22% Similarity=0.235 Sum_probs=130.2
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcE
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQT 261 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~ 261 (512)
..-...+++.|.+. .+ .++ ..+-.|..+.++.|.+..+|..++++..|.+|+|+.|++..+|..++.|+ |+.
T Consensus 75 tdt~~aDlsrNR~~-----elp~~~-~~f~~Le~liLy~n~~r~ip~~i~~L~~lt~l~ls~NqlS~lp~~lC~lp-Lkv 147 (722)
T KOG0532|consen 75 TDTVFADLSRNRFS-----ELPEEA-CAFVSLESLILYHNCIRTIPEAICNLEALTFLDLSSNQLSHLPDGLCDLP-LKV 147 (722)
T ss_pred cchhhhhccccccc-----cCchHH-HHHHHHHHHHHHhccceecchhhhhhhHHHHhhhccchhhcCChhhhcCc-cee
Confidence 33344555555544 33 333 55566777788888888888888888888888888888888888887655 788
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhh
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
|-+++|+++.+|..++.++.|.+||.+.|.+. .+|..++.+.+|+.+.+.. ....+|.++. .-.|.+|+++++ .
T Consensus 148 li~sNNkl~~lp~~ig~~~tl~~ld~s~nei~-slpsql~~l~slr~l~vrRn~l~~lp~El~-~LpLi~lDfScN---k 222 (722)
T KOG0532|consen 148 LIVSNNKLTSLPEEIGLLPTLAHLDVSKNEIQ-SLPSQLGYLTSLRDLNVRRNHLEDLPEELC-SLPLIRLDFSCN---K 222 (722)
T ss_pred EEEecCccccCCcccccchhHHHhhhhhhhhh-hchHHhhhHHHHHHHHHhhhhhhhCCHHHh-CCceeeeecccC---c
Confidence 88888888888888888888888888888774 6777888888888777764 3367778887 445778999887 7
Q ss_pred hhhHHHhccCCCCCcEEEeccCCC
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
...+|..+.++.+|+.|-|.+|-+
T Consensus 223 is~iPv~fr~m~~Lq~l~LenNPL 246 (722)
T KOG0532|consen 223 ISYLPVDFRKMRHLQVLQLENNPL 246 (722)
T ss_pred eeecchhhhhhhhheeeeeccCCC
Confidence 788999999999999999999866
No 36
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.84 E-value=6.4e-10 Score=100.99 Aligned_cols=126 Identities=23% Similarity=0.308 Sum_probs=62.1
Q ss_pred cCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEecc
Q 010381 257 LNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
..|+++||++|.|+.+-+++.-+|+++.|+++.|.+. ..+.+..+.+|+.|+++++
T Consensus 284 q~LtelDLS~N~I~~iDESvKL~Pkir~L~lS~N~i~------------------------~v~nLa~L~~L~~LDLS~N 339 (490)
T KOG1259|consen 284 QELTELDLSGNLITQIDESVKLAPKLRRLILSQNRIR------------------------TVQNLAELPQLQLLDLSGN 339 (490)
T ss_pred hhhhhccccccchhhhhhhhhhccceeEEecccccee------------------------eehhhhhcccceEeecccc
Confidence 3455555555555555555555555555555555442 1223555666666666665
Q ss_pred chhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 337 LSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 337 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
....+.. |-.++ -++++|.|++|.+. ....++.+-+|..|++++|++...
T Consensus 340 ---~Ls~~~G------------------------wh~KL-GNIKtL~La~N~iE--~LSGL~KLYSLvnLDl~~N~Ie~l 389 (490)
T KOG1259|consen 340 ---LLAECVG------------------------WHLKL-GNIKTLKLAQNKIE--TLSGLRKLYSLVNLDLSSNQIEEL 389 (490)
T ss_pred ---hhHhhhh------------------------hHhhh-cCEeeeehhhhhHh--hhhhhHhhhhheeccccccchhhH
Confidence 2222222 33344 45555555555442 233445555555555555554433
Q ss_pred eeeeeCCCCCccccEEEecCC
Q 010381 417 KLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 417 ~~~~~~~~~~~~L~~L~L~~~ 437 (512)
...-. ++++|+|+.+.|.++
T Consensus 390 deV~~-IG~LPCLE~l~L~~N 409 (490)
T KOG1259|consen 390 DEVNH-IGNLPCLETLRLTGN 409 (490)
T ss_pred HHhcc-cccccHHHHHhhcCC
Confidence 22222 455566666555553
No 37
>KOG1259 consensus Nischarin, modulator of integrin alpha5 subunit action [Signal transduction mechanisms; Cytoskeleton]
Probab=98.83 E-value=8.6e-10 Score=100.19 Aligned_cols=133 Identities=25% Similarity=0.236 Sum_probs=101.7
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE 398 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~ 398 (512)
...+...+.|++++++++ ....+..+..-.+.++.|+++.|.+.... .+..+ ++|+.|+|++|.++. .-.+-.
T Consensus 277 ~~~~dTWq~LtelDLS~N---~I~~iDESvKL~Pkir~L~lS~N~i~~v~--nLa~L-~~L~~LDLS~N~Ls~-~~Gwh~ 349 (490)
T KOG1259|consen 277 LVSADTWQELTELDLSGN---LITQIDESVKLAPKLRRLILSQNRIRTVQ--NLAEL-PQLQLLDLSGNLLAE-CVGWHL 349 (490)
T ss_pred EEecchHhhhhhcccccc---chhhhhhhhhhccceeEEeccccceeeeh--hhhhc-ccceEeecccchhHh-hhhhHh
Confidence 344455677899999998 56677777778899999999999886444 45667 999999999998753 222334
Q ss_pred CCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee--eeCCCCccccceeeecCCcc
Q 010381 399 KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW--TMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 399 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~ 463 (512)
.+.|++.|.+++|.+..- . |++.+-+|..|++++ +.++.+ ...+|++|.|+.+.+.+||.
T Consensus 350 KLGNIKtL~La~N~iE~L--S--GL~KLYSLvnLDl~~-N~Ie~ldeV~~IG~LPCLE~l~L~~NPl 411 (490)
T KOG1259|consen 350 KLGNIKTLKLAQNKIETL--S--GLRKLYSLVNLDLSS-NQIEELDEVNHIGNLPCLETLRLTGNPL 411 (490)
T ss_pred hhcCEeeeehhhhhHhhh--h--hhHhhhhheeccccc-cchhhHHHhcccccccHHHHHhhcCCCc
Confidence 688899999998887432 1 256778999999999 456644 35689999999999999994
No 38
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.79 E-value=8.3e-11 Score=106.58 Aligned_cols=182 Identities=21% Similarity=0.187 Sum_probs=98.6
Q ss_pred CCcEEecCCcccc--ccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEec
Q 010381 258 NLQTLQMPSSYID--QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISG 335 (512)
Q Consensus 258 ~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~ 335 (512)
.||+|||++..++ ++-.-+..+.+|+.|.+.++.+. ..+...++.-.+|+.|+++.
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~Ld----------------------D~I~~~iAkN~~L~~lnlsm 243 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLD----------------------DPIVNTIAKNSNLVRLNLSM 243 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccC----------------------cHHHHHHhccccceeecccc
Confidence 3666666665442 23334556666666666555543 33334455555666666666
Q ss_pred cchhhhhhHHHhccCCCCCcEEEeccCCC--CCCcccCcCCCCCCccEEEEecccC--CCCCCCC-CCCCcccceeEEEc
Q 010381 336 DLSYYQSRVSKSLCKLQKLEWLKLVNESK--PSRMVLSEYQFPPSLTHLSLSNTEL--KEDPMPT-LEKLPYVQVLKLKQ 410 (512)
Q Consensus 336 ~~~~~~~~l~~~l~~l~~L~~L~l~~~~~--p~L~~l~~~~lp~~L~~L~L~~~~~--~~~~~~~-l~~l~~L~~L~l~~ 410 (512)
|.+-....+...+.+|+.|..|+++|+.. |.... .+.+..++|+.|+|+||.- ....... ...+|+|..|+|++
T Consensus 244 ~sG~t~n~~~ll~~scs~L~~LNlsWc~l~~~~Vtv-~V~hise~l~~LNlsG~rrnl~~sh~~tL~~rcp~l~~LDLSD 322 (419)
T KOG2120|consen 244 CSGFTENALQLLLSSCSRLDELNLSWCFLFTEKVTV-AVAHISETLTQLNLSGYRRNLQKSHLSTLVRRCPNLVHLDLSD 322 (419)
T ss_pred ccccchhHHHHHHHhhhhHhhcCchHhhccchhhhH-HHhhhchhhhhhhhhhhHhhhhhhHHHHHHHhCCceeeecccc
Confidence 53222222333455666666666666432 11110 1122237778888887741 1112222 24677888888877
Q ss_pred ccccCceeeeeCCCCCccccEEEecCCCCcc-eeeeCCCCccccceeeecCCcc
Q 010381 411 NSYLGRKLACVGSGGFPELKVLHLKSMYWLD-EWTMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~ 463 (512)
|.......... +..|+.|++|.++.|..+. ..-..++..|+|.+|++.+|-.
T Consensus 323 ~v~l~~~~~~~-~~kf~~L~~lSlsRCY~i~p~~~~~l~s~psl~yLdv~g~vs 375 (419)
T KOG2120|consen 323 SVMLKNDCFQE-FFKFNYLQHLSLSRCYDIIPETLLELNSKPSLVYLDVFGCVS 375 (419)
T ss_pred ccccCchHHHH-HHhcchheeeehhhhcCCChHHeeeeccCcceEEEEeccccC
Confidence 65433322222 5567788888888776554 2223456777888888877743
No 39
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.76 E-value=2.8e-10 Score=107.84 Aligned_cols=85 Identities=15% Similarity=0.111 Sum_probs=41.8
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc-CC--ccCccccCccccCeeeecCCC-Cc--ccChhhh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV-LD--QFPPGLENLFLLKYLKLNIPS-LK--CLPSQLC 254 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~lp~~l~~l~~L~~L~l~~~~-i~--~lp~~~~ 254 (512)
.+++++.|.+.++... ++..+..+...+++|+.|++..|. ++ .+-.....+++|+||++++|. |+ .+-....
T Consensus 162 ~CpnIehL~l~gc~~i--Td~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC~kL~~lNlSwc~qi~~~gv~~~~r 239 (483)
T KOG4341|consen 162 NCPNIEHLALYGCKKI--TDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGCRKLKYLNLSWCPQISGNGVQALQR 239 (483)
T ss_pred hCCchhhhhhhcceec--cHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhhhhHHHhhhccCchhhcCcchHHhc
Confidence 5666666666665532 233334444566666666666644 44 111123345666666666652 33 1222233
Q ss_pred cCcCCcEEecCCc
Q 010381 255 TLLNLQTLQMPSS 267 (512)
Q Consensus 255 ~l~~L~~L~L~~~ 267 (512)
.+.+++.+.+++|
T Consensus 240 G~~~l~~~~~kGC 252 (483)
T KOG4341|consen 240 GCKELEKLSLKGC 252 (483)
T ss_pred cchhhhhhhhccc
Confidence 3444555555554
No 40
>KOG4341 consensus F-box protein containing LRR [General function prediction only]
Probab=98.70 E-value=5.6e-10 Score=105.86 Aligned_cols=107 Identities=13% Similarity=0.042 Sum_probs=74.0
Q ss_pred CCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc-CC--ccCccccCccccCeeeecCC-CCc--ccChhhhcC
Q 010381 183 MYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV-LD--QFPPGLENLFLLKYLKLNIP-SLK--CLPSQLCTL 256 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~lp~~l~~l~~L~~L~l~~~-~i~--~lp~~~~~l 256 (512)
.-||.|.+.++...+ ...+..+..+++++..|++.+|. ++ .+-..-.++.+|++|++..| .++ .+-.....+
T Consensus 138 g~lk~LSlrG~r~v~--~sslrt~~~~CpnIehL~l~gc~~iTd~s~~sla~~C~~l~~l~L~~c~~iT~~~Lk~la~gC 215 (483)
T KOG4341|consen 138 GFLKELSLRGCRAVG--DSSLRTFASNCPNIEHLALYGCKKITDSSLLSLARYCRKLRHLNLHSCSSITDVSLKYLAEGC 215 (483)
T ss_pred cccccccccccccCC--cchhhHHhhhCCchhhhhhhcceeccHHHHHHHHHhcchhhhhhhcccchhHHHHHHHHHHhh
Confidence 346777777776543 23445565889999999999987 55 23233356899999999995 566 333334579
Q ss_pred cCCcEEecCCc-cccc--cchhhhccccCceeecCCcc
Q 010381 257 LNLQTLQMPSS-YIDQ--SPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 257 ~~L~~L~L~~~-~~~~--lp~~i~~l~~L~~L~l~~~~ 291 (512)
++|++|++++| .+.. +.....++.+++.+.+.||.
T Consensus 216 ~kL~~lNlSwc~qi~~~gv~~~~rG~~~l~~~~~kGC~ 253 (483)
T KOG4341|consen 216 RKLKYLNLSWCPQISGNGVQALQRGCKELEKLSLKGCL 253 (483)
T ss_pred hhHHHhhhccCchhhcCcchHHhccchhhhhhhhcccc
Confidence 99999999999 6644 33345567777777666654
No 41
>KOG2120 consensus SCF ubiquitin ligase, Skp2 component [Posttranslational modification, protein turnover, chaperones]
Probab=98.65 E-value=3.6e-10 Score=102.51 Aligned_cols=181 Identities=22% Similarity=0.195 Sum_probs=95.3
Q ss_pred eeEEEEecCCcCC--ccCccccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCCc-cccccc--hhhhccccCcee
Q 010381 212 YLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSS-YIDQSP--EDIWMMQKLMHL 285 (512)
Q Consensus 212 ~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~-~~~~lp--~~i~~l~~L~~L 285 (512)
.|+.|||+...++ .+..-++.|.+|+.|.+.++.+. .+...+++-.+|+.|+|+.| .+++.. --+.++..|+.|
T Consensus 186 Rlq~lDLS~s~it~stl~~iLs~C~kLk~lSlEg~~LdD~I~~~iAkN~~L~~lnlsm~sG~t~n~~~ll~~scs~L~~L 265 (419)
T KOG2120|consen 186 RLQHLDLSNSVITVSTLHGILSQCSKLKNLSLEGLRLDDPIVNTIAKNSNLVRLNLSMCSGFTENALQLLLSSCSRLDEL 265 (419)
T ss_pred hhHHhhcchhheeHHHHHHHHHHHHhhhhccccccccCcHHHHHHhccccceeeccccccccchhHHHHHHHhhhhHhhc
Confidence 4666777776666 44445566677777777776666 55555666667777777776 554432 224566677777
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhh-hHHHhccCCCCCcEEEeccCCC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQS-RVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
+++.|....... ..... .--.+|+.|+++++...... .+..-...+
T Consensus 266 NlsWc~l~~~~V------------------tv~V~--hise~l~~LNlsG~rrnl~~sh~~tL~~rc------------- 312 (419)
T KOG2120|consen 266 NLSWCFLFTEKV------------------TVAVA--HISETLTQLNLSGYRRNLQKSHLSTLVRRC------------- 312 (419)
T ss_pred CchHhhccchhh------------------hHHHh--hhchhhhhhhhhhhHhhhhhhHHHHHHHhC-------------
Confidence 776665532110 00000 11235666777766422111 222223344
Q ss_pred CCCcccCcCCCCCCccEEEEeccc-CCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTE-LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
++|..|+|+.|. ++......+..++.|++|+++.|.......... +...|+|.+|++.+|-
T Consensus 313 ------------p~l~~LDLSD~v~l~~~~~~~~~kf~~L~~lSlsRCY~i~p~~~~~-l~s~psl~yLdv~g~v 374 (419)
T KOG2120|consen 313 ------------PNLVHLDLSDSVMLKNDCFQEFFKFNYLQHLSLSRCYDIIPETLLE-LNSKPSLVYLDVFGCV 374 (419)
T ss_pred ------------CceeeeccccccccCchHHHHHHhcchheeeehhhhcCCChHHeee-eccCcceEEEEecccc
Confidence 455555555442 222222334556666666666555333222222 5666777777777653
No 42
>PLN03150 hypothetical protein; Provisional
Probab=98.62 E-value=8.2e-08 Score=101.75 Aligned_cols=101 Identities=18% Similarity=0.240 Sum_probs=67.5
Q ss_pred eeEEEEecCCcCC-ccCccccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCCcccc-ccchhhhccccCceeecC
Q 010381 212 YLRVLDLGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 212 ~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~ 288 (512)
.++.|+|+++.+. .+|..++.+++|++|+|++|.+. .+|..++.+++|+.|+|++|.+. .+|..++++++|++|+++
T Consensus 419 ~v~~L~L~~n~L~g~ip~~i~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~~L~Ls 498 (623)
T PLN03150 419 FIDGLGLDNQGLRGFIPNDISKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLRILNLN 498 (623)
T ss_pred EEEEEECCCCCccccCCHHHhCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCCEEECc
Confidence 3666777777766 66667777777777777777776 67767777777777777777553 566667777777777777
Q ss_pred CcccCCCCCCCCCCC-CCCCeeecC
Q 010381 289 SITLPAPPTNYSSSL-KNLIFVSAL 312 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l-~~L~~l~l~ 312 (512)
+|.+.+.+|..++.+ .++..+++.
T Consensus 499 ~N~l~g~iP~~l~~~~~~~~~l~~~ 523 (623)
T PLN03150 499 GNSLSGRVPAALGGRLLHRASFNFT 523 (623)
T ss_pred CCcccccCChHHhhccccCceEEec
Confidence 777776666655542 233444444
No 43
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.57 E-value=7.7e-09 Score=104.63 Aligned_cols=240 Identities=21% Similarity=0.219 Sum_probs=111.6
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCc
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~ 290 (512)
..+..+++..+.+...-..++.+++|.+|++.+|.|+.+...+..+++|++|++++|.|+.+. .+..++.|+.|++++|
T Consensus 72 ~~l~~l~l~~n~i~~~~~~l~~~~~l~~l~l~~n~i~~i~~~l~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N 150 (414)
T KOG0531|consen 72 TSLKELNLRQNLIAKILNHLSKLKSLEALDLYDNKIEKIENLLSSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGN 150 (414)
T ss_pred HhHHhhccchhhhhhhhcccccccceeeeeccccchhhcccchhhhhcchheecccccccccc-chhhccchhhheeccC
Confidence 334444455555544333455556666666666666655543555666666666666665553 2555555666666666
Q ss_pred ccCCCCCCCCCCCCCCCeeecCCCCccCchh--cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALHPISCTPDI--LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~--l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
.+.. ..++..++.|+.+++++........ +..+.+++.+.+.++. ... ...+..+..+..+++..|.+..++
T Consensus 151 ~i~~--~~~~~~l~~L~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~--i~~--i~~~~~~~~l~~~~l~~n~i~~~~ 224 (414)
T KOG0531|consen 151 LISD--ISGLESLKSLKLLDLSYNRIVDIENDELSELISLEELDLGGNS--IRE--IEGLDLLKKLVLLSLLDNKISKLE 224 (414)
T ss_pred cchh--ccCCccchhhhcccCCcchhhhhhhhhhhhccchHHHhccCCc--hhc--ccchHHHHHHHHhhcccccceecc
Confidence 5531 2223333444444443210111111 3555666666666552 111 011111222333344555554333
Q ss_pred ccCcCCCCCC--ccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc--eee
Q 010381 369 VLSEYQFPPS--LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD--EWT 444 (512)
Q Consensus 369 ~l~~~~lp~~--L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~ 444 (512)
.+..+ .. |+.+.++++.+.. .+..+..+.++..|++..+.+....- ....+.+..+......... ...
T Consensus 225 --~l~~~-~~~~L~~l~l~~n~i~~-~~~~~~~~~~l~~l~~~~n~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~ 296 (414)
T KOG0531|consen 225 --GLNEL-VMLHLRELYLSGNRISR-SPEGLENLKNLPVLDLSSNRISNLEG----LERLPKLSELWLNDNKLALSEAIS 296 (414)
T ss_pred --Ccccc-hhHHHHHHhcccCcccc-ccccccccccccccchhhcccccccc----ccccchHHHhccCcchhcchhhhh
Confidence 22222 22 6666776666542 11445566666666666555433221 2333444444444422111 111
Q ss_pred e--CCCCccccceeeecCCcccC
Q 010381 445 M--GAGAMPKLESLIVDPCAYLR 465 (512)
Q Consensus 445 ~--~~~~l~~L~~L~l~~c~~l~ 465 (512)
. .....+.++.+.+.+++.-.
T Consensus 297 ~~~~~~~~~~~~~~~~~~~~~~~ 319 (414)
T KOG0531|consen 297 QEYITSAAPTLVTLTLELNPIRK 319 (414)
T ss_pred ccccccccccccccccccCcccc
Confidence 1 13455666666666665444
No 44
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.46 E-value=1.5e-07 Score=67.08 Aligned_cols=56 Identities=30% Similarity=0.462 Sum_probs=25.3
Q ss_pred eeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCc
Q 010381 212 YLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSS 267 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~ 267 (512)
+|++|++++|.++.+| ..|..+++|++|++++|.++.+|+ .+..+++|++|++++|
T Consensus 2 ~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N 59 (61)
T PF13855_consen 2 NLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNN 59 (61)
T ss_dssp TESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSS
T ss_pred cCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCC
Confidence 3445555555444444 234444444444444444443332 2344444444444444
No 45
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.42 E-value=1.2e-07 Score=86.34 Aligned_cols=226 Identities=19% Similarity=0.189 Sum_probs=129.6
Q ss_pred eEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC---ccCccccCccccCeeeecCCCCcccChhh-hcCcCCcE
Q 010381 186 QSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD---QFPPGLENLFLLKYLKLNIPSLKCLPSQL-CTLLNLQT 261 (512)
Q Consensus 186 r~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L~~ 261 (512)
.-+.+.++.+.. ..++..|-..++.++.+||.+|.++ ++-.-+.++++|++|+++.|.+...-.++ ..+.+|++
T Consensus 48 ellvln~~~id~--~gd~~~~~~~~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~ 125 (418)
T KOG2982|consen 48 ELLVLNGSIIDN--EGDVMLFGSSVTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRV 125 (418)
T ss_pred hhheecCCCCCc--chhHHHHHHHhhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEE
Confidence 345555555432 1233556567888888898888877 44455678888899999888765221122 34678888
Q ss_pred EecCCcc--ccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchh
Q 010381 262 LQMPSSY--IDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSY 339 (512)
Q Consensus 262 L~L~~~~--~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 339 (512)
|-|.++. .+.....+..+|+++.|+++.|.+.. +++.. .+..+ --+.+++|+...|...
T Consensus 126 lVLNgT~L~w~~~~s~l~~lP~vtelHmS~N~~rq--------------~n~Dd--~c~e~---~s~~v~tlh~~~c~~~ 186 (418)
T KOG2982|consen 126 LVLNGTGLSWTQSTSSLDDLPKVTELHMSDNSLRQ--------------LNLDD--NCIED---WSTEVLTLHQLPCLEQ 186 (418)
T ss_pred EEEcCCCCChhhhhhhhhcchhhhhhhhccchhhh--------------hcccc--ccccc---cchhhhhhhcCCcHHH
Confidence 8888873 35666667788888888888875432 11211 01100 1224556666666423
Q ss_pred hhhhHHHhccCCCCCcEEEeccCCCCCCccc-CcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEcccccCce
Q 010381 340 YQSRVSKSLCKLQKLEWLKLVNESKPSRMVL-SEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 340 ~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l-~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
........-.-++++..+.+..+.+..++.= ....+ +.+..|.|+.+++.+ ...+.+..+++|..|.+.++.+.+..
T Consensus 187 ~w~~~~~l~r~Fpnv~sv~v~e~PlK~~s~ek~se~~-p~~~~LnL~~~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l 265 (418)
T KOG2982|consen 187 LWLNKNKLSRIFPNVNSVFVCEGPLKTESSEKGSEPF-PSLSCLNLGANNIDSWASVDALNGFPQLVDLRVSENPLSDPL 265 (418)
T ss_pred HHHHHHhHHhhcccchheeeecCcccchhhcccCCCC-CcchhhhhcccccccHHHHHHHcCCchhheeeccCCcccccc
Confidence 3333333334456777766666543211100 33445 666677777776643 23345667778888888777654321
Q ss_pred ----eeeeCCCCCccccEEE
Q 010381 418 ----LACVGSGGFPELKVLH 433 (512)
Q Consensus 418 ----~~~~~~~~~~~L~~L~ 433 (512)
....-++.+++++.|+
T Consensus 266 ~~~err~llIaRL~~v~vLN 285 (418)
T KOG2982|consen 266 RGGERRFLLIARLTKVQVLN 285 (418)
T ss_pred cCCcceEEEEeeccceEEec
Confidence 1111145566666664
No 46
>KOG2982 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.40 E-value=3.3e-08 Score=90.02 Aligned_cols=202 Identities=17% Similarity=0.186 Sum_probs=103.0
Q ss_pred CcCCcEEecCCccccc---cchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC---CccCchhcCCCCCCC
Q 010381 256 LLNLQTLQMPSSYIDQ---SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP---ISCTPDILGRLPNIQ 329 (512)
Q Consensus 256 l~~L~~L~L~~~~~~~---lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~---~~~~~~~l~~l~~L~ 329 (512)
++.++.|||.+|.+.. +...+.++|.|+.|+++.|.+...+-.--..+.+|+.+.++++ ..+.-..+..++.++
T Consensus 70 ~~~v~elDL~~N~iSdWseI~~ile~lP~l~~LNls~N~L~s~I~~lp~p~~nl~~lVLNgT~L~w~~~~s~l~~lP~vt 149 (418)
T KOG2982|consen 70 VTDVKELDLTGNLISDWSEIGAILEQLPALTTLNLSCNSLSSDIKSLPLPLKNLRVLVLNGTGLSWTQSTSSLDDLPKVT 149 (418)
T ss_pred hhhhhhhhcccchhccHHHHHHHHhcCccceEeeccCCcCCCccccCcccccceEEEEEcCCCCChhhhhhhhhcchhhh
Confidence 3445555555554432 2223345566666666555543211100012233444444431 122233445555566
Q ss_pred eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC--CCCCCCCCCcccceeE
Q 010381 330 TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE--DPMPTLEKLPYVQVLK 407 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~--~~~~~l~~l~~L~~L~ 407 (512)
.|+++.+ +++.+.+..|.+.. | - +.+.+|+...|.... .....-.-+|++..+.
T Consensus 150 elHmS~N----------------~~rq~n~Dd~c~e~----~---s-~~v~tlh~~~c~~~~w~~~~~l~r~Fpnv~sv~ 205 (418)
T KOG2982|consen 150 ELHMSDN----------------SLRQLNLDDNCIED----W---S-TEVLTLHQLPCLEQLWLNKNKLSRIFPNVNSVF 205 (418)
T ss_pred hhhhccc----------------hhhhhccccccccc----c---c-hhhhhhhcCCcHHHHHHHHHhHHhhcccchhee
Confidence 6666555 33344444333221 1 1 344555555543210 0011113467777778
Q ss_pred EEcccccCceeeeeCCCCCccccEEEecCCCCcceee--eCCCCccccceeeecCCcccCCCCc------ccCCCCCCcE
Q 010381 408 LKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT--MGAGAMPKLESLIVDPCAYLRKLPE------ELWCIQSLRK 479 (512)
Q Consensus 408 l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp~------~~~~l~~L~~ 479 (512)
+..|.+....-... ...+|.+-.|.|+. +++.+|. ..+..||.|..|.+.++|....+-- .++.+++++.
T Consensus 206 v~e~PlK~~s~ek~-se~~p~~~~LnL~~-~~idswasvD~Ln~f~~l~dlRv~~~Pl~d~l~~~err~llIaRL~~v~v 283 (418)
T KOG2982|consen 206 VCEGPLKTESSEKG-SEPFPSLSCLNLGA-NNIDSWASVDALNGFPQLVDLRVSENPLSDPLRGGERRFLLIARLTKVQV 283 (418)
T ss_pred eecCcccchhhccc-CCCCCcchhhhhcc-cccccHHHHHHHcCCchhheeeccCCcccccccCCcceEEEEeeccceEE
Confidence 87777665443333 56677777777777 4566553 4567888888888888886554321 3466777777
Q ss_pred EEcc
Q 010381 480 LDLH 483 (512)
Q Consensus 480 L~l~ 483 (512)
|+=+
T Consensus 284 LNGs 287 (418)
T KOG2982|consen 284 LNGS 287 (418)
T ss_pred ecCc
Confidence 6644
No 47
>PF13855 LRR_8: Leucine rich repeat; PDB: 2O6S_A 3A79_B 3RFS_A 3G39_A 3VQ2_A 3VQ1_B 2Z64_A 2Z66_C 3FXI_A 2Z63_A ....
Probab=98.40 E-value=4e-07 Score=64.87 Aligned_cols=59 Identities=24% Similarity=0.326 Sum_probs=47.8
Q ss_pred cccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCccc
Q 010381 234 FLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 234 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 292 (512)
++|++|++++|+++.+|. .+.++++|++|++++|.+..+++ .+..+++|++|++++|++
T Consensus 1 p~L~~L~l~~n~l~~i~~~~f~~l~~L~~L~l~~N~l~~i~~~~f~~l~~L~~L~l~~N~l 61 (61)
T PF13855_consen 1 PNLESLDLSNNKLTEIPPDSFSNLPNLETLDLSNNNLTSIPPDAFSNLPNLRYLDLSNNNL 61 (61)
T ss_dssp TTESEEEETSSTESEECTTTTTTGTTESEEEETSSSESEEETTTTTTSTTESEEEETSSSB
T ss_pred CcCcEEECCCCCCCccCHHHHcCCCCCCEeEccCCccCccCHHHHcCCCCCCEEeCcCCcC
Confidence 468888888888887775 56788888888888888888775 567888888888888764
No 48
>PLN03150 hypothetical protein; Provisional
Probab=98.39 E-value=9.1e-07 Score=93.88 Aligned_cols=106 Identities=17% Similarity=0.282 Sum_probs=91.3
Q ss_pred CeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCccccCeeeecCCCCc-ccChhhhcCcCCc
Q 010381 184 YLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQ 260 (512)
Q Consensus 184 ~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~ 260 (512)
.++.|.+.++.... .+ ..+ ..+++|+.|+|++|.+. .+|..++.+++|++|++++|.+. .+|..++++++|+
T Consensus 419 ~v~~L~L~~n~L~g----~ip~~i-~~L~~L~~L~Ls~N~l~g~iP~~~~~l~~L~~LdLs~N~lsg~iP~~l~~L~~L~ 493 (623)
T PLN03150 419 FIDGLGLDNQGLRG----FIPNDI-SKLRHLQSINLSGNSIRGNIPPSLGSITSLEVLDLSYNSFNGSIPESLGQLTSLR 493 (623)
T ss_pred EEEEEECCCCCccc----cCCHHH-hCCCCCCEEECCCCcccCcCChHHhCCCCCCEEECCCCCCCCCCchHHhcCCCCC
Confidence 47888888887753 55 556 89999999999999998 89999999999999999999998 8999999999999
Q ss_pred EEecCCccc-cccchhhhcc-ccCceeecCCcccCC
Q 010381 261 TLQMPSSYI-DQSPEDIWMM-QKLMHLNFGSITLPA 294 (512)
Q Consensus 261 ~L~L~~~~~-~~lp~~i~~l-~~L~~L~l~~~~~~~ 294 (512)
+|+|++|.+ ..+|..++.+ .++..+++.+|....
T Consensus 494 ~L~Ls~N~l~g~iP~~l~~~~~~~~~l~~~~N~~lc 529 (623)
T PLN03150 494 ILNLNGNSLSGRVPAALGGRLLHRASFNFTDNAGLC 529 (623)
T ss_pred EEECcCCcccccCChHHhhccccCceEEecCCcccc
Confidence 999999966 5889888753 577889988886543
No 49
>KOG0531 consensus Protein phosphatase 1, regulatory subunit, and related proteins [Signal transduction mechanisms]
Probab=98.36 E-value=6.8e-08 Score=97.77 Aligned_cols=105 Identities=24% Similarity=0.285 Sum_probs=68.4
Q ss_pred CCCCeeEEEEecCCcchhhhcchhH-HhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCEN-FCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~-~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 259 (512)
.+.+++.|.+.++.+. .+.. + ..+++|++|++++|.|+.+. .+..++.|+.|++++|.|+.+. .+..+.+|
T Consensus 93 ~~~~l~~l~l~~n~i~-----~i~~~l-~~~~~L~~L~ls~N~I~~i~-~l~~l~~L~~L~l~~N~i~~~~-~~~~l~~L 164 (414)
T KOG0531|consen 93 KLKSLEALDLYDNKIE-----KIENLL-SSLVNLQVLDLSFNKITKLE-GLSTLTLLKELNLSGNLISDIS-GLESLKSL 164 (414)
T ss_pred cccceeeeeccccchh-----hcccch-hhhhcchheecccccccccc-chhhccchhhheeccCcchhcc-CCccchhh
Confidence 5666777777777665 3333 3 66777777777777776553 3555666777777777777654 34446777
Q ss_pred cEEecCCccccccchh-hhccccCceeecCCcccC
Q 010381 260 QTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 260 ~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~ 293 (512)
+.+++.+|.+..+... ...+.+++.+++.+|.+.
T Consensus 165 ~~l~l~~n~i~~ie~~~~~~~~~l~~l~l~~n~i~ 199 (414)
T KOG0531|consen 165 KLLDLSYNRIVDIENDELSELISLEELDLGGNSIR 199 (414)
T ss_pred hcccCCcchhhhhhhhhhhhccchHHHhccCCchh
Confidence 7777777766666543 466777777777776653
No 50
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.14 E-value=2.7e-06 Score=55.56 Aligned_cols=38 Identities=32% Similarity=0.416 Sum_probs=20.9
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCcccccc
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS 272 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l 272 (512)
+|++|++++|+|+++|..+++|++|++|++++|.++.+
T Consensus 2 ~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i 39 (44)
T PF12799_consen 2 NLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDI 39 (44)
T ss_dssp T-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBE
T ss_pred cceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCC
Confidence 45556666666655555555566666666666555544
No 51
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=98.07 E-value=7.3e-08 Score=97.68 Aligned_cols=126 Identities=18% Similarity=0.186 Sum_probs=86.0
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP 314 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~ 314 (512)
.|...+.++|.+..+-.++.-++.|+.|||+.|++...- .+..|++|++||+++|++. .+|.
T Consensus 165 ~L~~a~fsyN~L~~mD~SLqll~ale~LnLshNk~~~v~-~Lr~l~~LkhLDlsyN~L~-~vp~---------------- 226 (1096)
T KOG1859|consen 165 KLATASFSYNRLVLMDESLQLLPALESLNLSHNKFTKVD-NLRRLPKLKHLDLSYNCLR-HVPQ---------------- 226 (1096)
T ss_pred hHhhhhcchhhHHhHHHHHHHHHHhhhhccchhhhhhhH-HHHhcccccccccccchhc-cccc----------------
Confidence 466667777777777777777888888888888887764 6788888888888888874 2221
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc-CcCCCCCCccEEEEecccC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL-SEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l-~~~~lp~~L~~L~L~~~~~ 389 (512)
.-..-..|+.|.+++| ....+ ..+.++.+|+.||+++|-+..-..| -+..+ ..|+.|.|.||.+
T Consensus 227 ------l~~~gc~L~~L~lrnN---~l~tL-~gie~LksL~~LDlsyNll~~hseL~pLwsL-s~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 227 ------LSMVGCKLQLLNLRNN---ALTTL-RGIENLKSLYGLDLSYNLLSEHSELEPLWSL-SSLIVLWLEGNPL 291 (1096)
T ss_pred ------cchhhhhheeeeeccc---HHHhh-hhHHhhhhhhccchhHhhhhcchhhhHHHHH-HHHHHHhhcCCcc
Confidence 0011123778888887 33333 3456778888888888766432222 33455 7788889988875
No 52
>PF12799 LRR_4: Leucine Rich repeats (2 copies); PDB: 2OMT_A 1XEU_A 2OMX_A 2OMU_A 2UZY_A 2WQU_D 1D0B_A 2WQW_A 1OTO_A 2WQV_B ....
Probab=98.05 E-value=3.7e-06 Score=54.93 Aligned_cols=40 Identities=33% Similarity=0.454 Sum_probs=34.5
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLP 250 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp 250 (512)
++|++|++++|.++.+|..+++|++|++|++++|.+++++
T Consensus 1 ~~L~~L~l~~N~i~~l~~~l~~l~~L~~L~l~~N~i~~i~ 40 (44)
T PF12799_consen 1 KNLEELDLSNNQITDLPPELSNLPNLETLNLSNNPISDIS 40 (44)
T ss_dssp TT-SEEEETSSS-SSHGGHGTTCTTSSEEEETSSCCSBEG
T ss_pred CcceEEEccCCCCcccCchHhCCCCCCEEEecCCCCCCCc
Confidence 4789999999999999888999999999999999998775
No 53
>PRK15386 type III secretion protein GogB; Provisional
Probab=98.03 E-value=1.6e-05 Score=77.92 Aligned_cols=76 Identities=17% Similarity=0.202 Sum_probs=55.5
Q ss_pred hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCC-CCcccChhhhcCcCCcEEecCCc-cccccchhhhcccc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIP-SLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQK 281 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~-~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~ 281 (512)
..+ ..+++++.|++++|.++.+|. + -.+|+.|.+++| .++.+|..+. .+|+.|++++| .+..+|..
T Consensus 46 ~r~-~~~~~l~~L~Is~c~L~sLP~-L--P~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs~L~sLP~s------ 113 (426)
T PRK15386 46 PQI-EEARASGRLYIKDCDIESLPV-L--PNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCPEISGLPES------ 113 (426)
T ss_pred HHH-HHhcCCCEEEeCCCCCcccCC-C--CCCCcEEEccCCCCcccCCchhh--hhhhheEccCcccccccccc------
Confidence 445 667889999999998888873 1 236999999875 5667776553 68999999998 78878753
Q ss_pred CceeecCCcc
Q 010381 282 LMHLNFGSIT 291 (512)
Q Consensus 282 L~~L~l~~~~ 291 (512)
|+.|++.++.
T Consensus 114 Le~L~L~~n~ 123 (426)
T PRK15386 114 VRSLEIKGSA 123 (426)
T ss_pred cceEEeCCCC
Confidence 5666665443
No 54
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.03 E-value=5.2e-06 Score=88.07 Aligned_cols=130 Identities=18% Similarity=0.229 Sum_probs=95.8
Q ss_pred CceeEEEEEecCCc--cccCCC--CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCcccc
Q 010381 161 ANVKRCFILKDLID--FFPSEY--SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~--~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L 236 (512)
..++++.+.+.... .-+... .+|.|++|.+.+.... ..++..+|.++++|+.||+++++++.+ .+++.+++|
T Consensus 122 ~nL~~LdI~G~~~~s~~W~~kig~~LPsL~sL~i~~~~~~---~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 122 QNLQHLDISGSELFSNGWPKKIGTMLPSLRSLVISGRQFD---NDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HhhhhcCccccchhhccHHHHHhhhCcccceEEecCceec---chhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 45677777632211 111122 7999999999998765 234667779999999999999999977 779999999
Q ss_pred CeeeecCCCCcc--cChhhhcCcCCcEEecCCccccccch-------hhhccccCceeecCCcccCC
Q 010381 237 KYLKLNIPSLKC--LPSQLCTLLNLQTLQMPSSYIDQSPE-------DIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 237 ~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~lp~-------~i~~l~~L~~L~l~~~~~~~ 294 (512)
+.|.+.+-.+.. .-..+.+|++|++||++.......+. .-..||+|+.||.+++.+.+
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~~~~~~~ii~qYlec~~~LpeLrfLDcSgTdi~~ 264 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDKNNDDTKIIEQYLECGMVLPELRFLDCSGTDINE 264 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccccccchHHHHHHHHhcccCccccEEecCCcchhH
Confidence 999999877773 22457789999999999884433221 11358999999999887765
No 55
>KOG3665 consensus ZYG-1-like serine/threonine protein kinases [General function prediction only]
Probab=98.00 E-value=4.3e-06 Score=88.68 Aligned_cols=107 Identities=21% Similarity=0.171 Sum_probs=52.6
Q ss_pred CCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCcccChhhhcCcCC
Q 010381 182 DMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNL 259 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L 259 (512)
-.+|+.|++.|..... ......+..-+|.|+.|.+++-.+. .+-....++++|+.||+++++++.+ ..+++|++|
T Consensus 121 r~nL~~LdI~G~~~~s--~~W~~kig~~LPsL~sL~i~~~~~~~~dF~~lc~sFpNL~sLDIS~TnI~nl-~GIS~LknL 197 (699)
T KOG3665|consen 121 RQNLQHLDISGSELFS--NGWPKKIGTMLPSLRSLVISGRQFDNDDFSQLCASFPNLRSLDISGTNISNL-SGISRLKNL 197 (699)
T ss_pred HHhhhhcCccccchhh--ccHHHHHhhhCcccceEEecCceecchhHHHHhhccCccceeecCCCCccCc-HHHhccccH
Confidence 3455556555533221 1122444344556666655554433 2223334455566666666655555 355556666
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcc
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~ 291 (512)
++|.+++-.+..-. ..+.+|++|++||+|...
T Consensus 198 q~L~mrnLe~e~~~~l~~LF~L~~L~vLDIS~~~ 231 (699)
T KOG3665|consen 198 QVLSMRNLEFESYQDLIDLFNLKKLRVLDISRDK 231 (699)
T ss_pred HHHhccCCCCCchhhHHHHhcccCCCeeeccccc
Confidence 66655554443221 234555555555555443
No 56
>KOG1859 consensus Leucine-rich repeat proteins [General function prediction only]
Probab=97.93 E-value=2.4e-07 Score=94.10 Aligned_cols=87 Identities=30% Similarity=0.318 Sum_probs=47.1
Q ss_pred hhcCCCCCCCeEEEeccchhhhhhHHHh-ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC-CCCCCC
Q 010381 320 DILGRLPNIQTLRISGDLSYYQSRVSKS-LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE-DPMPTL 397 (512)
Q Consensus 320 ~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~-~~~~~l 397 (512)
+.+..++.|++|++++| ....+|.. ...+ +|..|.+++|.+..|. .+.++ .+|+.|+++.|.+.+ .-...+
T Consensus 203 ~~Lr~l~~LkhLDlsyN---~L~~vp~l~~~gc-~L~~L~lrnN~l~tL~--gie~L-ksL~~LDlsyNll~~hseL~pL 275 (1096)
T KOG1859|consen 203 DNLRRLPKLKHLDLSYN---CLRHVPQLSMVGC-KLQLLNLRNNALTTLR--GIENL-KSLYGLDLSYNLLSEHSELEPL 275 (1096)
T ss_pred HHHHhcccccccccccc---hhccccccchhhh-hheeeeecccHHHhhh--hHHhh-hhhhccchhHhhhhcchhhhHH
Confidence 34556666666666665 23333321 1122 3666666666665554 55566 666666666665533 112233
Q ss_pred CCCcccceeEEEcccc
Q 010381 398 EKLPYVQVLKLKQNSY 413 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~ 413 (512)
..+..|+.|.|.||.+
T Consensus 276 wsLs~L~~L~LeGNPl 291 (1096)
T KOG1859|consen 276 WSLSSLIVLWLEGNPL 291 (1096)
T ss_pred HHHHHHHHHhhcCCcc
Confidence 4455666666666654
No 57
>PRK15386 type III secretion protein GogB; Provisional
Probab=97.86 E-value=6.3e-05 Score=73.82 Aligned_cols=57 Identities=16% Similarity=0.146 Sum_probs=40.4
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcc
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~ 291 (512)
+..+.++++|++++|.++.+|. --.+|++|.+++| .+..+|..+. ++|++|++++|.
T Consensus 48 ~~~~~~l~~L~Is~c~L~sLP~---LP~sLtsL~Lsnc~nLtsLP~~LP--~nLe~L~Ls~Cs 105 (426)
T PRK15386 48 IEEARASGRLYIKDCDIESLPV---LPNELTEITIENCNNLTTLPGSIP--EGLEKLTVCHCP 105 (426)
T ss_pred HHHhcCCCEEEeCCCCCcccCC---CCCCCcEEEccCCCCcccCCchhh--hhhhheEccCcc
Confidence 3446778888888888887772 1246888888887 6777776552 578888887774
No 58
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.74 E-value=6.1e-05 Score=68.29 Aligned_cols=86 Identities=17% Similarity=0.105 Sum_probs=40.1
Q ss_pred CCccEEEEecccCCCCCCC----CCCCCcccceeEEEcccccCceeeee----CCCCCccccEEEecCCCCcce-e----
Q 010381 377 PSLTHLSLSNTELKEDPMP----TLEKLPYVQVLKLKQNSYLGRKLACV----GSGGFPELKVLHLKSMYWLDE-W---- 443 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~----~l~~l~~L~~L~l~~~~~~~~~~~~~----~~~~~~~L~~L~L~~~~~l~~-l---- 443 (512)
.+|+.|+|..|.++..... .+...+.|++|.+.+|-++....... .-..+|+|..|-..++..-.. +
T Consensus 214 ~~LevLDlqDNtft~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~ 293 (388)
T COG5238 214 HSLEVLDLQDNTFTLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDIS 293 (388)
T ss_pred CcceeeeccccchhhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeec
Confidence 5555555555544321111 12233446666666555443221100 012246666666655322111 1
Q ss_pred -e-eCCCCccccceeeecCCc
Q 010381 444 -T-MGAGAMPKLESLIVDPCA 462 (512)
Q Consensus 444 -~-~~~~~l~~L~~L~l~~c~ 462 (512)
+ ...+++|-|..|.+.+|.
T Consensus 294 l~~~e~~~~p~L~~le~ngNr 314 (388)
T COG5238 294 LNEFEQDAVPLLVDLERNGNR 314 (388)
T ss_pred hhhhhhcccHHHHHHHHccCc
Confidence 1 123567788888887776
No 59
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.71 E-value=8.6e-06 Score=66.04 Aligned_cols=71 Identities=23% Similarity=0.362 Sum_probs=37.3
Q ss_pred hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE 274 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~ 274 (512)
+.|..+++.++.|++++|.++.+|..+..++.||.|+++.|.+...|.-+..|.+|-.|+.-++...++|.
T Consensus 70 ~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Lds~~na~~eid~ 140 (177)
T KOG4579|consen 70 KKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLDSPENARAEIDV 140 (177)
T ss_pred HHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhcCCCCccccCcH
Confidence 34434444555555555555555555555555555555555555555555555555555555554444443
No 60
>KOG4579 consensus Leucine-rich repeat (LRR) protein associated with apoptosis in muscle tissue [General function prediction only]
Probab=97.56 E-value=2.2e-05 Score=63.70 Aligned_cols=85 Identities=19% Similarity=0.195 Sum_probs=71.2
Q ss_pred cCCCeeEEEEecCCcCCccCccccC-ccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLEN-LFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLN 286 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~-l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 286 (512)
.....|...++++|.+.++|+.|.. .+.+..|++++|.|.++|..+..++.|+.|+++.|.+...|.-+..|.+|-.|+
T Consensus 50 ~~~~el~~i~ls~N~fk~fp~kft~kf~t~t~lNl~~neisdvPeE~Aam~aLr~lNl~~N~l~~~p~vi~~L~~l~~Ld 129 (177)
T KOG4579|consen 50 SKGYELTKISLSDNGFKKFPKKFTIKFPTATTLNLANNEISDVPEELAAMPALRSLNLRFNPLNAEPRVIAPLIKLDMLD 129 (177)
T ss_pred hCCceEEEEecccchhhhCCHHHhhccchhhhhhcchhhhhhchHHHhhhHHhhhcccccCccccchHHHHHHHhHHHhc
Confidence 6677888889999998888877654 457888999999999999888889999999999998888888888888888888
Q ss_pred cCCccc
Q 010381 287 FGSITL 292 (512)
Q Consensus 287 l~~~~~ 292 (512)
..+|..
T Consensus 130 s~~na~ 135 (177)
T KOG4579|consen 130 SPENAR 135 (177)
T ss_pred CCCCcc
Confidence 877665
No 61
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=97.40 E-value=1.7e-05 Score=82.32 Aligned_cols=236 Identities=20% Similarity=0.159 Sum_probs=111.5
Q ss_pred cCCCeeEEEEecCCc-CCc--cCccccCccccCeeeecCC--CCcc----cChhhhcCcCCcEEecCCcc-ccccc-hhh
Q 010381 208 KKFKYLRVLDLGSAV-LDQ--FPPGLENLFLLKYLKLNIP--SLKC----LPSQLCTLLNLQTLQMPSSY-IDQSP-EDI 276 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~-l~~--lp~~l~~l~~L~~L~l~~~--~i~~----lp~~~~~l~~L~~L~L~~~~-~~~lp-~~i 276 (512)
..++.|+.|.+.++. +.. +-.....+++|+.|+++++ .+.. .......+.+|+.|+++++. ++..- ..+
T Consensus 185 ~~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~isd~~l~~l 264 (482)
T KOG1947|consen 185 SSCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVTDIGLSAL 264 (482)
T ss_pred hhCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccCchhHHHH
Confidence 445666666666553 332 2233445556666666542 1111 11123344566666666663 33221 112
Q ss_pred h-ccccCceeecCCcc-cCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCC
Q 010381 277 W-MMQKLMHLNFGSIT-LPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKL 354 (512)
Q Consensus 277 ~-~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L 354 (512)
. .+++|++|.+.+|. ++. ..+......+++|++|++++|.......+.....++++|
T Consensus 265 ~~~c~~L~~L~l~~c~~lt~---------------------~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~~~~~c~~l 323 (482)
T KOG1947|consen 265 ASRCPNLETLSLSNCSNLTD---------------------EGLVSIAERCPSLRELDLSGCHGLTDSGLEALLKNCPNL 323 (482)
T ss_pred HhhCCCcceEccCCCCccch---------------------hHHHHHHHhcCcccEEeeecCccchHHHHHHHHHhCcch
Confidence 2 25566666544443 110 333444566778888888888533344455555667777
Q ss_pred cEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC---CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccE
Q 010381 355 EWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE---DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431 (512)
Q Consensus 355 ~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~---~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 431 (512)
+.|.+.. ...+ +.++.+.+.++.... ........+++++.+.+..+.......... ..+++.|.
T Consensus 324 ~~l~~~~----------~~~c-~~l~~~~l~~~~~~~~d~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~-l~gc~~l~- 390 (482)
T KOG1947|consen 324 RELKLLS----------LNGC-PSLTDLSLSGLLTLTSDDLAELILRSCPKLTDLSLSYCGISDLGLELS-LRGCPNLT- 390 (482)
T ss_pred hhhhhhh----------cCCC-ccHHHHHHHHhhccCchhHhHHHHhcCCCcchhhhhhhhccCcchHHH-hcCCcccc-
Confidence 7765543 2223 455555555543211 111224567777777777665322221111 33444441
Q ss_pred EEecCCCCcceeeeCCCCccccceeeecCCcccCCCCccc-C-CCCCCcEEEccCCh
Q 010381 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEEL-W-CIQSLRKLDLHWPQ 486 (512)
Q Consensus 432 L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~-~l~~L~~L~l~~~~ 486 (512)
.. +.........++.|++..|...+.--... . .+..+..+++.+|+
T Consensus 391 ~~---------l~~~~~~~~~l~~L~l~~~~~~t~~~l~~~~~~~~~~~~l~~~~~~ 438 (482)
T KOG1947|consen 391 ES---------LELRLCRSDSLRVLNLSDCRLVTDKGLRCLADSCSNLKDLDLSGCR 438 (482)
T ss_pred hH---------HHHHhccCCccceEecccCccccccchHHHhhhhhccccCCccCcc
Confidence 11 11111222226666666666444211100 1 15556666666665
No 62
>COG5238 RNA1 Ran GTPase-activating protein (RanGAP) involved in mRNA processing and transport [Signal transduction mechanisms / RNA processing and modification]
Probab=97.40 E-value=0.00015 Score=65.89 Aligned_cols=246 Identities=17% Similarity=0.128 Sum_probs=133.7
Q ss_pred hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCC---Cc-ccCh-------hhhcCcCCcEEecCCc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPS---LK-CLPS-------QLCTLLNLQTLQMPSS 267 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~---i~-~lp~-------~~~~l~~L~~L~L~~~ 267 (512)
..+ .-+..+..++||||.|. .+...+.+-.+|+.-+++.-. .. ++|. .+-+|++|+..+|+.|
T Consensus 24 eel-~~~d~~~evdLSGNtigtEA~e~l~~~ia~~~~L~vvnfsd~ftgr~kde~~~~L~~Ll~aLlkcp~l~~v~LSDN 102 (388)
T COG5238 24 EEL-EMMDELVEVDLSGNTIGTEAMEELCNVIANVRNLRVVNFSDAFTGRDKDELYSNLVMLLKALLKCPRLQKVDLSDN 102 (388)
T ss_pred HHH-HhhcceeEEeccCCcccHHHHHHHHHHHhhhcceeEeehhhhhhcccHHHHHHHHHHHHHHHhcCCcceeeecccc
Confidence 455 45788888999998876 334445556677777776521 11 3333 3445677777777776
Q ss_pred cc-cccc----hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhh
Q 010381 268 YI-DQSP----EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQS 342 (512)
Q Consensus 268 ~~-~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 342 (512)
.+ .+.| +.|++-..|.||.+++|.+. .+.. +.+...+.++
T Consensus 103 Afg~~~~e~L~d~is~~t~l~HL~l~NnGlG-p~aG-----------------~rigkal~~l----------------- 147 (388)
T COG5238 103 AFGSEFPEELGDLISSSTDLVHLKLNNNGLG-PIAG-----------------GRIGKALFHL----------------- 147 (388)
T ss_pred ccCcccchHHHHHHhcCCCceeEEeecCCCC-ccch-----------------hHHHHHHHHH-----------------
Confidence 33 2222 33556666667766666542 1110 0000000000
Q ss_pred hHHHhccCCCCCcEEEeccCCCCCCccc----CcCCCCCCccEEEEecccCCCCCCC-----CCCCCcccceeEEEcccc
Q 010381 343 RVSKSLCKLQKLEWLKLVNESKPSRMVL----SEYQFPPSLTHLSLSNTELKEDPMP-----TLEKLPYVQVLKLKQNSY 413 (512)
Q Consensus 343 ~l~~~l~~l~~L~~L~l~~~~~p~L~~l----~~~~lp~~L~~L~L~~~~~~~~~~~-----~l~~l~~L~~L~l~~~~~ 413 (512)
..-....+.+.|++..+..|++-+-..- .+..- .+|+.+.+..|.|...... .+..+.+|+.|++++|.+
T Consensus 148 a~nKKaa~kp~Le~vicgrNRlengs~~~~a~~l~sh-~~lk~vki~qNgIrpegv~~L~~~gl~y~~~LevLDlqDNtf 226 (388)
T COG5238 148 AYNKKAADKPKLEVVICGRNRLENGSKELSAALLESH-ENLKEVKIQQNGIRPEGVTMLAFLGLFYSHSLEVLDLQDNTF 226 (388)
T ss_pred HHHhhhccCCCceEEEeccchhccCcHHHHHHHHHhh-cCceeEEeeecCcCcchhHHHHHHHHHHhCcceeeeccccch
Confidence 0011233445666666665554210000 11222 5788888888877543222 234578999999999987
Q ss_pred cCceeeee--CCCCCccccEEEecCCCCcce----ee--eCCCCccccceeeecCCcccCC------CCcc-cCCCCCCc
Q 010381 414 LGRKLACV--GSGGFPELKVLHLKSMYWLDE----WT--MGAGAMPKLESLIVDPCAYLRK------LPEE-LWCIQSLR 478 (512)
Q Consensus 414 ~~~~~~~~--~~~~~~~L~~L~L~~~~~l~~----l~--~~~~~l~~L~~L~l~~c~~l~~------lp~~-~~~l~~L~ 478 (512)
+....... .....+.|+.|.+.+|-.-.. +- +.....|+|..|...+|..-.. +|.. -.++|-|.
T Consensus 227 t~~gS~~La~al~~W~~lrEL~lnDClls~~G~~~v~~~f~e~~~p~l~~L~~~Yne~~~~~i~~~~l~~~e~~~~p~L~ 306 (388)
T COG5238 227 TLEGSRYLADALCEWNLLRELRLNDCLLSNEGVKSVLRRFNEKFVPNLMPLPGDYNERRGGIILDISLNEFEQDAVPLLV 306 (388)
T ss_pred hhhhHHHHHHHhcccchhhhccccchhhccccHHHHHHHhhhhcCCCccccccchhhhcCceeeeechhhhhhcccHHHH
Confidence 64321110 145567899999998743221 11 1234578899988888764322 2221 13566677
Q ss_pred EEEccCCh
Q 010381 479 KLDLHWPQ 486 (512)
Q Consensus 479 ~L~l~~~~ 486 (512)
.+.+.||.
T Consensus 307 ~le~ngNr 314 (388)
T COG5238 307 DLERNGNR 314 (388)
T ss_pred HHHHccCc
Confidence 77777664
No 63
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.37 E-value=0.00038 Score=60.54 Aligned_cols=128 Identities=23% Similarity=0.243 Sum_probs=79.6
Q ss_pred CcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEE
Q 010381 354 LEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433 (512)
Q Consensus 354 L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 433 (512)
=+.+++.+..+|..+.+.. -. .....++|++|.+.. .+.|..++.|..|.+.+|.++...+.. ..-+|+|..|.
T Consensus 21 e~e~~LR~lkip~ienlg~-~~-d~~d~iDLtdNdl~~--l~~lp~l~rL~tLll~nNrIt~I~p~L--~~~~p~l~~L~ 94 (233)
T KOG1644|consen 21 ERELDLRGLKIPVIENLGA-TL-DQFDAIDLTDNDLRK--LDNLPHLPRLHTLLLNNNRITRIDPDL--DTFLPNLKTLI 94 (233)
T ss_pred ccccccccccccchhhccc-cc-cccceecccccchhh--cccCCCccccceEEecCCcceeeccch--hhhccccceEE
Confidence 3445555544554332210 11 355667777776643 345667777888888877777665554 35567888888
Q ss_pred ecCCCCcceee--eCCCCccccceeeecCCcccCCC---CcccCCCCCCcEEEccCChHH
Q 010381 434 LKSMYWLDEWT--MGAGAMPKLESLIVDPCAYLRKL---PEELWCIQSLRKLDLHWPQTE 488 (512)
Q Consensus 434 L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~l---p~~~~~l~~L~~L~l~~~~~~ 488 (512)
+.+ +.+.++. ..+..||+|++|.+-+|+....- -..+..+|+|+.||..+-...
T Consensus 95 Ltn-Nsi~~l~dl~pLa~~p~L~~Ltll~Npv~~k~~YR~yvl~klp~l~~LDF~kVt~~ 153 (233)
T KOG1644|consen 95 LTN-NSIQELGDLDPLASCPKLEYLTLLGNPVEHKKNYRLYVLYKLPSLRTLDFQKVTRK 153 (233)
T ss_pred ecC-cchhhhhhcchhccCCccceeeecCCchhcccCceeEEEEecCcceEeehhhhhHH
Confidence 887 3455442 34567888888888888754421 124567889999998887643
No 64
>KOG1644 consensus U2-associated snRNP A' protein [RNA processing and modification]
Probab=97.25 E-value=0.00046 Score=60.08 Aligned_cols=59 Identities=25% Similarity=0.204 Sum_probs=25.2
Q ss_pred CCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecC
Q 010381 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKS 436 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (512)
+.|..|.+.+|.++...+..-.-+|+|..|.+.+|.+..-.-.-. ...+|.|++|.+-+
T Consensus 64 ~rL~tLll~nNrIt~I~p~L~~~~p~l~~L~LtnNsi~~l~dl~p-La~~p~L~~Ltll~ 122 (233)
T KOG1644|consen 64 PRLHTLLLNNNRITRIDPDLDTFLPNLKTLILTNNSIQELGDLDP-LASCPKLEYLTLLG 122 (233)
T ss_pred cccceEEecCCcceeeccchhhhccccceEEecCcchhhhhhcch-hccCCccceeeecC
Confidence 445555555555444333333334445555555444322111111 33445555555444
No 65
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=97.09 E-value=6.6e-05 Score=68.29 Aligned_cols=99 Identities=20% Similarity=0.249 Sum_probs=75.1
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh--hhhcCcC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS--QLCTLLN 258 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~ 258 (512)
++.+++.|++.++...+ -.++.+|+.|.||.|+-|.|+.+. .+..|++|+.|.|..|.|.++-. .+.++++
T Consensus 17 dl~~vkKLNcwg~~L~D------Isic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlps 89 (388)
T KOG2123|consen 17 DLENVKKLNCWGCGLDD------ISICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPS 89 (388)
T ss_pred HHHHhhhhcccCCCccH------HHHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCch
Confidence 35567778888887763 455689999999999999998763 47889999999999998885543 3668899
Q ss_pred CcEEecCCc-cccccch-----hhhccccCceee
Q 010381 259 LQTLQMPSS-YIDQSPE-----DIWMMQKLMHLN 286 (512)
Q Consensus 259 L~~L~L~~~-~~~~lp~-----~i~~l~~L~~L~ 286 (512)
|++|-|..| ...+-+. .+..||+|+.||
T Consensus 90 Lr~LWL~ENPCc~~ag~nYR~~VLR~LPnLkKLD 123 (388)
T KOG2123|consen 90 LRTLWLDENPCCGEAGQNYRRKVLRVLPNLKKLD 123 (388)
T ss_pred hhhHhhccCCcccccchhHHHHHHHHcccchhcc
Confidence 999999887 4433332 356788888885
No 66
>KOG1947 consensus Leucine rich repeat proteins, some proteins contain F-box [General function prediction only]
Probab=96.75 E-value=0.0001 Score=76.49 Aligned_cols=217 Identities=22% Similarity=0.175 Sum_probs=108.3
Q ss_pred CccccCeeeecCC-CCcc--cChhhhcCcCCcEEecCCc--cccccc----hhhhccccCceeecCCcccCCCCCCCCCC
Q 010381 232 NLFLLKYLKLNIP-SLKC--LPSQLCTLLNLQTLQMPSS--YIDQSP----EDIWMMQKLMHLNFGSITLPAPPTNYSSS 302 (512)
Q Consensus 232 ~l~~L~~L~l~~~-~i~~--lp~~~~~l~~L~~L~L~~~--~~~~lp----~~i~~l~~L~~L~l~~~~~~~~~p~~~~~ 302 (512)
.++.|+.|.+.++ .+.. +-.....+++|+.|+++++ .....+ .....+++|++|+++++....
T Consensus 186 ~~~~L~~l~l~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~~~~~~~~~L~~l~l~~~~~is-------- 257 (482)
T KOG1947|consen 186 SCPLLKRLSLSGCSKITDDSLDALALKCPNLEELDLSGCCLLITLSPLLLLLLLSICRKLKSLDLSGCGLVT-------- 257 (482)
T ss_pred hCchhhHhhhcccccCChhhHHHHHhhCchhheecccCcccccccchhHhhhhhhhcCCcCccchhhhhccC--------
Confidence 3567777777665 3443 3344556777777777763 222211 223345666677666655210
Q ss_pred CCCCCeeecCCCCccCchhc-CCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC---CCcccCcCCCCCC
Q 010381 303 LKNLIFVSALHPISCTPDIL-GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP---SRMVLSEYQFPPS 378 (512)
Q Consensus 303 l~~L~~l~l~~~~~~~~~~l-~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p---~L~~l~~~~lp~~ 378 (512)
......+ ..+++|+.|.+.+|.......+......+++|++|++++...- .+.. ....+ ++
T Consensus 258 -------------d~~l~~l~~~c~~L~~L~l~~c~~lt~~gl~~i~~~~~~L~~L~l~~c~~~~d~~l~~-~~~~c-~~ 322 (482)
T KOG1947|consen 258 -------------DIGLSALASRCPNLETLSLSNCSNLTDEGLVSIAERCPSLRELDLSGCHGLTDSGLEA-LLKNC-PN 322 (482)
T ss_pred -------------chhHHHHHhhCCCcceEccCCCCccchhHHHHHHHhcCcccEEeeecCccchHHHHHH-HHHhC-cc
Confidence 1122222 2377888888777742233445555666777888888763221 0110 12223 44
Q ss_pred ccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC--ceeeeeCCCCCccccEEEecCCCCcceeeeCCCCcccccee
Q 010381 379 LTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG--RKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESL 456 (512)
Q Consensus 379 L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~--~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L 456 (512)
++.|.+.... .++.++.+.+.++.... ...... ...+++++.+.+..|. ..... ..+
T Consensus 323 l~~l~~~~~~----------~c~~l~~~~l~~~~~~~~d~~~~~~-~~~~~~l~~~~l~~~~-~~~~~---------~~~ 381 (482)
T KOG1947|consen 323 LRELKLLSLN----------GCPSLTDLSLSGLLTLTSDDLAELI-LRSCPKLTDLSLSYCG-ISDLG---------LEL 381 (482)
T ss_pred hhhhhhhhcC----------CCccHHHHHHHHhhccCchhHhHHH-HhcCCCcchhhhhhhh-ccCcc---------hHH
Confidence 4444333222 14445555554332211 122222 4566777777776655 22211 044
Q ss_pred eecCCccc-CCCCcccCCCCCCcEEEccCChHHHHHH
Q 010381 457 IVDPCAYL-RKLPEELWCIQSLRKLDLHWPQTELRQR 492 (512)
Q Consensus 457 ~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~~~~~~~ 492 (512)
.+.+|+.+ ..+........+++.|.+..|.......
T Consensus 382 ~l~gc~~l~~~l~~~~~~~~~l~~L~l~~~~~~t~~~ 418 (482)
T KOG1947|consen 382 SLRGCPNLTESLELRLCRSDSLRVLNLSDCRLVTDKG 418 (482)
T ss_pred HhcCCcccchHHHHHhccCCccceEecccCccccccc
Confidence 55556555 2222222334448899999987444333
No 67
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.68 E-value=0.00083 Score=60.98 Aligned_cols=81 Identities=22% Similarity=0.180 Sum_probs=41.5
Q ss_pred cCCCeeEEEEecCC--cCC-ccCccccCccccCeeeecCCCCccc--ChhhhcCcCCcEEecCCccccccc----hhhhc
Q 010381 208 KKFKYLRVLDLGSA--VLD-QFPPGLENLFLLKYLKLNIPSLKCL--PSQLCTLLNLQTLQMPSSYIDQSP----EDIWM 278 (512)
Q Consensus 208 ~~~~~L~~L~l~~~--~l~-~lp~~l~~l~~L~~L~l~~~~i~~l--p~~~~~l~~L~~L~L~~~~~~~lp----~~i~~ 278 (512)
..+++|+.|.++.| .+. .++-....+++|++|++++|+|..+ -..+..+.+|..|++.+|..+.+- ..+.-
T Consensus 62 P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL~~Ldl~n~~~~~l~dyre~vf~l 141 (260)
T KOG2739|consen 62 PKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENLKSLDLFNCSVTNLDDYREKVFLL 141 (260)
T ss_pred CCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcchhhhhcccCCccccccHHHHHHHH
Confidence 55566666666666 333 3433344456666666666655521 113445566666666666333332 12334
Q ss_pred cccCceeecC
Q 010381 279 MQKLMHLNFG 288 (512)
Q Consensus 279 l~~L~~L~l~ 288 (512)
+++|++||-.
T Consensus 142 l~~L~~LD~~ 151 (260)
T KOG2739|consen 142 LPSLKYLDGC 151 (260)
T ss_pred hhhhcccccc
Confidence 5555555443
No 68
>KOG2123 consensus Uncharacterized conserved protein [Function unknown]
Probab=96.47 E-value=0.00016 Score=65.89 Aligned_cols=85 Identities=19% Similarity=0.198 Sum_probs=65.9
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccc--hhhhccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSP--EDIWMMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L 285 (512)
+.+.+.+-|++-||.+..+ ....+++.|+.|.|+-|+|+.+. .+..|++|++|.|+.|.|..+- ..+.++++|+.|
T Consensus 16 sdl~~vkKLNcwg~~L~DI-sic~kMp~lEVLsLSvNkIssL~-pl~rCtrLkElYLRkN~I~sldEL~YLknlpsLr~L 93 (388)
T KOG2123|consen 16 SDLENVKKLNCWGCGLDDI-SICEKMPLLEVLSLSVNKISSLA-PLQRCTRLKELYLRKNCIESLDELEYLKNLPSLRTL 93 (388)
T ss_pred hHHHHhhhhcccCCCccHH-HHHHhcccceeEEeeccccccch-hHHHHHHHHHHHHHhcccccHHHHHHHhcCchhhhH
Confidence 4566777888888888754 23567889999999999999885 6788999999999999777664 346788888888
Q ss_pred ecCCcccCC
Q 010381 286 NFGSITLPA 294 (512)
Q Consensus 286 ~l~~~~~~~ 294 (512)
-|..|.-.+
T Consensus 94 WL~ENPCc~ 102 (388)
T KOG2123|consen 94 WLDENPCCG 102 (388)
T ss_pred hhccCCccc
Confidence 887766544
No 69
>KOG2739 consensus Leucine-rich acidic nuclear protein [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=96.15 E-value=0.0034 Score=57.06 Aligned_cols=85 Identities=19% Similarity=0.203 Sum_probs=53.7
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCC--CCc-ccChhhhcCcCCcEEecCCccccccc--hhhhccccC
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIP--SLK-CLPSQLCTLLNLQTLQMPSSYIDQSP--EDIWMMQKL 282 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~--~i~-~lp~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L 282 (512)
..+..|..|++.++.++.+ ..+-.+++|++|.++.| .+. .++....++++|++|++++|.+..+. ..+..+.+|
T Consensus 40 d~~~~le~ls~~n~gltt~-~~~P~Lp~LkkL~lsdn~~~~~~~l~vl~e~~P~l~~l~ls~Nki~~lstl~pl~~l~nL 118 (260)
T KOG2739|consen 40 DEFVELELLSVINVGLTTL-TNFPKLPKLKKLELSDNYRRVSGGLEVLAEKAPNLKVLNLSGNKIKDLSTLRPLKELENL 118 (260)
T ss_pred ccccchhhhhhhccceeec-ccCCCcchhhhhcccCCcccccccceehhhhCCceeEEeecCCccccccccchhhhhcch
Confidence 3445555555555554422 22445778888888888 555 66656666788888888888554321 225667777
Q ss_pred ceeecCCcccC
Q 010381 283 MHLNFGSITLP 293 (512)
Q Consensus 283 ~~L~l~~~~~~ 293 (512)
..|++.+|..+
T Consensus 119 ~~Ldl~n~~~~ 129 (260)
T KOG2739|consen 119 KSLDLFNCSVT 129 (260)
T ss_pred hhhhcccCCcc
Confidence 78887777654
No 70
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.71 E-value=0.0047 Score=33.45 Aligned_cols=16 Identities=44% Similarity=0.723 Sum_probs=6.3
Q ss_pred cCeeeecCCCCcccCh
Q 010381 236 LKYLKLNIPSLKCLPS 251 (512)
Q Consensus 236 L~~L~l~~~~i~~lp~ 251 (512)
|++|++++|.++.+|.
T Consensus 2 L~~Ldls~n~l~~ip~ 17 (22)
T PF00560_consen 2 LEYLDLSGNNLTSIPS 17 (22)
T ss_dssp ESEEEETSSEESEEGT
T ss_pred ccEEECCCCcCEeCCh
Confidence 3344444443333333
No 71
>PF00560 LRR_1: Leucine Rich Repeat; InterPro: IPR001611 Leucine-rich repeats (LRR) consist of 2-45 motifs of 20-30 amino acids in length that generally folds into an arc or horseshoe shape []. LRRs occur in proteins ranging from viruses to eukaryotes, and appear to provide a structural framework for the formation of protein-protein interactions [, ].Proteins containing LRRs include tyrosine kinase receptors, cell-adhesion molecules, virulence factors, and extracellular matrix-binding glycoproteins, and are involved in a variety of biological processes, including signal transduction, cell adhesion, DNA repair, recombination, transcription, RNA processing, disease resistance, apoptosis, and the immune response []. Sequence analyses of LRR proteins suggested the existence of several different subfamilies of LRRs. The significance of this classification is that repeats from different subfamilies never occur simultaneously and have most probably evolved independently. It is, however, now clear that all major classes of LRR have curved horseshoe structures with a parallel beta sheet on the concave side and mostly helical elements on the convex side. At least six families of LRR proteins, characterised by different lengths and consensus sequences of the repeats, have been identified. Eleven-residue segments of the LRRs (LxxLxLxxN/CxL), corresponding to the beta-strand and adjacent loop regions, are conserved in LRR proteins, whereas the remaining parts of the repeats (herein termed variable) may be very different. Despite the differences, each of the variable parts contains two half-turns at both ends and a "linear" segment (as the chain follows a linear path overall), usually formed by a helix, in the middle. The concave face and the adjacent loops are the most common protein interaction surfaces on LRR proteins. 3D structure of some LRR proteins-ligand complexes show that the concave surface of LRR domain is ideal for interaction with alpha-helix, thus supporting earlier conclusions that the elongated and curved LRR structure provides an outstanding framework for achieving diverse protein-protein interactions []. Molecular modeling suggests that the conserved pattern LxxLxL, which is shorter than the previously proposed LxxLxLxxN/CxL is sufficient to impart the characteristic horseshoe curvature to proteins with 20- to 30-residue repeats []. ; GO: 0005515 protein binding; PDB: 4ECO_B 2A0Z_A 3ULU_A 1ZIW_A 3ULV_A 1DCE_C 1LTX_A 3J0A_B 3A79_B 4FCG_A ....
Probab=95.48 E-value=0.006 Score=33.05 Aligned_cols=21 Identities=19% Similarity=0.328 Sum_probs=13.5
Q ss_pred CCcEEecCCccccccchhhhc
Q 010381 258 NLQTLQMPSSYIDQSPEDIWM 278 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~i~~ 278 (512)
+|++||+++|.++.+|+++++
T Consensus 1 ~L~~Ldls~n~l~~ip~~~~~ 21 (22)
T PF00560_consen 1 NLEYLDLSGNNLTSIPSSFSN 21 (22)
T ss_dssp TESEEEETSSEESEEGTTTTT
T ss_pred CccEEECCCCcCEeCChhhcC
Confidence 466777777766666665543
No 72
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=94.75 E-value=0.0015 Score=58.09 Aligned_cols=89 Identities=19% Similarity=0.120 Sum_probs=73.5
Q ss_pred hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLM 283 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~ 283 (512)
.++ ..+...++||++.+.+..+-..++.+..|..|+++.+.+..+|..++.+..+..+++..|+....|.+.++.+.++
T Consensus 36 ~ei-~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~~~p~s~~k~~~~k 114 (326)
T KOG0473|consen 36 REI-ASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHSQQPKSQKKEPHPK 114 (326)
T ss_pred hhh-hccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchhhCCccccccCCcc
Confidence 555 6778888888888887766677777888888888888888888888888888888888888888888888888888
Q ss_pred eeecCCcccC
Q 010381 284 HLNFGSITLP 293 (512)
Q Consensus 284 ~L~l~~~~~~ 293 (512)
++++.++.+.
T Consensus 115 ~~e~k~~~~~ 124 (326)
T KOG0473|consen 115 KNEQKKTEFF 124 (326)
T ss_pred hhhhccCcch
Confidence 8888777654
No 73
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.30 E-value=0.002 Score=56.20 Aligned_cols=85 Identities=18% Similarity=0.226 Sum_probs=46.5
Q ss_pred CccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc-eeeeeCCCCCccccEEEecCCCCccee-eeCCCCccccce
Q 010381 378 SLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR-KLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLES 455 (512)
Q Consensus 378 ~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~-~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~ 455 (512)
.++.++-+++.+.....+.+.+++.++.|.+.+|...++ .+... .+..++|+.|+|++|+.+++- -..+..+++|+.
T Consensus 102 ~IeaVDAsds~I~~eGle~L~~l~~i~~l~l~~ck~~dD~~L~~l-~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 102 KIEAVDASDSSIMYEGLEHLRDLRSIKSLSLANCKYFDDWCLERL-GGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred eEEEEecCCchHHHHHHHHHhccchhhhheeccccchhhHHHHHh-cccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 455566666665555555566666666666665553322 12221 234566666666666666522 123455666666
Q ss_pred eeecCCcc
Q 010381 456 LIVDPCAY 463 (512)
Q Consensus 456 L~l~~c~~ 463 (512)
|.+++-+.
T Consensus 181 L~l~~l~~ 188 (221)
T KOG3864|consen 181 LHLYDLPY 188 (221)
T ss_pred HHhcCchh
Confidence 66665443
No 74
>KOG3864 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.13 E-value=0.004 Score=54.40 Aligned_cols=82 Identities=21% Similarity=0.325 Sum_probs=63.7
Q ss_pred cceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee--eCCCCccccceeeecCCcccCCCC-cccCCCCCCcE
Q 010381 403 VQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT--MGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRK 479 (512)
Q Consensus 403 L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~--~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~ 479 (512)
++.++-+++.+..+.+.. +..+++++.|.+.+|..+..+. ..-+-.|+|+.|+|++|+.+++-. ..+..+++|+.
T Consensus 103 IeaVDAsds~I~~eGle~--L~~l~~i~~l~l~~ck~~dD~~L~~l~~~~~~L~~L~lsgC~rIT~~GL~~L~~lknLr~ 180 (221)
T KOG3864|consen 103 IEAVDASDSSIMYEGLEH--LRDLRSIKSLSLANCKYFDDWCLERLGGLAPSLQDLDLSGCPRITDGGLACLLKLKNLRR 180 (221)
T ss_pred EEEEecCCchHHHHHHHH--HhccchhhhheeccccchhhHHHHHhcccccchheeeccCCCeechhHHHHHHHhhhhHH
Confidence 566777766666666554 5778999999999999998663 223467999999999999888632 24678999999
Q ss_pred EEccCCh
Q 010381 480 LDLHWPQ 486 (512)
Q Consensus 480 L~l~~~~ 486 (512)
|.+.+.|
T Consensus 181 L~l~~l~ 187 (221)
T KOG3864|consen 181 LHLYDLP 187 (221)
T ss_pred HHhcCch
Confidence 9999976
No 75
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=94.03 E-value=0.15 Score=41.94 Aligned_cols=78 Identities=10% Similarity=0.204 Sum_probs=27.0
Q ss_pred cCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchh-hhccccCce
Q 010381 208 KKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMH 284 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~ 284 (512)
..+++|+.+.+.. .++.++ ..|..+.+|+.+.+.++ +..++. .+.++.+|+.+.+.+ .+..++.. +..+++|+.
T Consensus 9 ~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l~~ 85 (129)
T PF13306_consen 9 YNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNLKN 85 (129)
T ss_dssp TT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTECE
T ss_pred hCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccccc
Confidence 4445555555543 233332 23444445555555442 333322 233444455555543 23223222 333555555
Q ss_pred eecC
Q 010381 285 LNFG 288 (512)
Q Consensus 285 L~l~ 288 (512)
+++.
T Consensus 86 i~~~ 89 (129)
T PF13306_consen 86 IDIP 89 (129)
T ss_dssp EEET
T ss_pred cccC
Confidence 5443
No 76
>PF13306 LRR_5: Leucine rich repeats (6 copies); PDB: 3ZYJ_A 3V47_B 3V44_A 3ZYN_A 3ZYO_A 3SB4_A.
Probab=93.58 E-value=0.21 Score=41.04 Aligned_cols=102 Identities=15% Similarity=0.193 Sum_probs=48.0
Q ss_pred cccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCC
Q 010381 229 GLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL 306 (512)
Q Consensus 229 ~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L 306 (512)
.|.++.+|+.+.+.. .++.++.. +..+.+|+.+.+..+ +..++. .+.++++|+.+.+.. .........+.++++|
T Consensus 7 ~F~~~~~l~~i~~~~-~~~~I~~~~F~~~~~l~~i~~~~~-~~~i~~~~F~~~~~l~~i~~~~-~~~~i~~~~F~~~~~l 83 (129)
T PF13306_consen 7 AFYNCSNLESITFPN-TIKKIGENAFSNCTSLKSINFPNN-LTSIGDNAFSNCKSLESITFPN-NLKSIGDNAFSNCTNL 83 (129)
T ss_dssp TTTT-TT--EEEETS-T--EE-TTTTTT-TT-SEEEESST-TSCE-TTTTTT-TT-EEEEETS-TT-EE-TTTTTT-TTE
T ss_pred HHhCCCCCCEEEECC-CeeEeChhhccccccccccccccc-ccccceeeeecccccccccccc-cccccccccccccccc
Confidence 467777888888875 46655443 667778888888775 555554 356676788888765 2221222345556666
Q ss_pred CeeecCCCCccCc-hhcCCCCCCCeEEEe
Q 010381 307 IFVSALHPISCTP-DILGRLPNIQTLRIS 334 (512)
Q Consensus 307 ~~l~l~~~~~~~~-~~l~~l~~L~~L~l~ 334 (512)
+.+.+...+..+. ..+.++ +|+.+.+.
T Consensus 84 ~~i~~~~~~~~i~~~~f~~~-~l~~i~~~ 111 (129)
T PF13306_consen 84 KNIDIPSNITEIGSSSFSNC-NLKEINIP 111 (129)
T ss_dssp CEEEETTT-BEEHTTTTTT--T--EEE-T
T ss_pred cccccCccccEEchhhhcCC-CceEEEEC
Confidence 6666653212122 223333 55555544
No 77
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.56 E-value=0.044 Score=27.46 Aligned_cols=13 Identities=31% Similarity=0.373 Sum_probs=4.4
Q ss_pred cCeeeecCCCCcc
Q 010381 236 LKYLKLNIPSLKC 248 (512)
Q Consensus 236 L~~L~l~~~~i~~ 248 (512)
|+.|++++|++++
T Consensus 3 L~~L~l~~n~L~~ 15 (17)
T PF13504_consen 3 LRTLDLSNNRLTS 15 (17)
T ss_dssp -SEEEETSS--SS
T ss_pred cCEEECCCCCCCC
Confidence 4444444444433
No 78
>PF13504 LRR_7: Leucine rich repeat; PDB: 3OJA_B 3G06_A 1OOK_G 1QYY_G 1SQ0_B 1P9A_G 1GWB_A 1P8V_A 1M0Z_A 1U0N_D ....
Probab=93.55 E-value=0.05 Score=27.27 Aligned_cols=16 Identities=31% Similarity=0.592 Sum_probs=6.3
Q ss_pred CCcEEecCCccccccc
Q 010381 258 NLQTLQMPSSYIDQSP 273 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp 273 (512)
+|++|++++|.++++|
T Consensus 2 ~L~~L~l~~n~L~~lP 17 (17)
T PF13504_consen 2 NLRTLDLSNNRLTSLP 17 (17)
T ss_dssp T-SEEEETSS--SSE-
T ss_pred ccCEEECCCCCCCCCc
Confidence 4555555555554443
No 79
>KOG0473 consensus Leucine-rich repeat protein [Function unknown]
Probab=89.98 E-value=0.017 Score=51.59 Aligned_cols=89 Identities=12% Similarity=0.082 Sum_probs=73.9
Q ss_pred ccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCC
Q 010381 225 QFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSL 303 (512)
Q Consensus 225 ~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l 303 (512)
.+| ..+........|+++.+++..+-..++.++.|.-||++.+.+.-+|..++.+..++++++..|+.. ..|.+.+.+
T Consensus 32 ~~~v~ei~~~kr~tvld~~s~r~vn~~~n~s~~t~~~rl~~sknq~~~~~~d~~q~~e~~~~~~~~n~~~-~~p~s~~k~ 110 (326)
T KOG0473|consen 32 EIPVREIASFKRVTVLDLSSNRLVNLGKNFSILTRLVRLDLSKNQIKFLPKDAKQQRETVNAASHKNNHS-QQPKSQKKE 110 (326)
T ss_pred ccchhhhhccceeeeehhhhhHHHhhccchHHHHHHHHHhccHhhHhhChhhHHHHHHHHHHHhhccchh-hCCcccccc
Confidence 444 346778889999999999888888888899999999999999999999999999999999888763 677777777
Q ss_pred CCCCeeecCCC
Q 010381 304 KNLIFVSALHP 314 (512)
Q Consensus 304 ~~L~~l~l~~~ 314 (512)
+.++.++..++
T Consensus 111 ~~~k~~e~k~~ 121 (326)
T KOG0473|consen 111 PHPKKNEQKKT 121 (326)
T ss_pred CCcchhhhccC
Confidence 77777776653
No 80
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=89.74 E-value=0.33 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=9.7
Q ss_pred cCCcEEecCCccccccchh
Q 010381 257 LNLQTLQMPSSYIDQSPED 275 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~ 275 (512)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00369 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 81
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=89.74 E-value=0.33 Score=27.23 Aligned_cols=19 Identities=21% Similarity=0.417 Sum_probs=9.7
Q ss_pred cCCcEEecCCccccccchh
Q 010381 257 LNLQTLQMPSSYIDQSPED 275 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~ 275 (512)
++|++|+|++|.+..+|..
T Consensus 2 ~~L~~L~L~~N~l~~lp~~ 20 (26)
T smart00370 2 PNLRELDLSNNQLSSLPPG 20 (26)
T ss_pred CCCCEEECCCCcCCcCCHH
Confidence 3455555555555555543
No 82
>smart00370 LRR Leucine-rich repeats, outliers.
Probab=88.59 E-value=0.36 Score=27.09 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=15.6
Q ss_pred ccccCeeeecCCCCcccChhh
Q 010381 233 LFLLKYLKLNIPSLKCLPSQL 253 (512)
Q Consensus 233 l~~L~~L~l~~~~i~~lp~~~ 253 (512)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00370 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777654
No 83
>smart00369 LRR_TYP Leucine-rich repeats, typical (most populated) subfamily.
Probab=88.59 E-value=0.36 Score=27.09 Aligned_cols=21 Identities=33% Similarity=0.336 Sum_probs=15.6
Q ss_pred ccccCeeeecCCCCcccChhh
Q 010381 233 LFLLKYLKLNIPSLKCLPSQL 253 (512)
Q Consensus 233 l~~L~~L~l~~~~i~~lp~~~ 253 (512)
+++|++|++++|.++.+|...
T Consensus 1 L~~L~~L~L~~N~l~~lp~~~ 21 (26)
T smart00369 1 LPNLRELDLSNNQLSSLPPGA 21 (26)
T ss_pred CCCCCEEECCCCcCCcCCHHH
Confidence 356788888888888777654
No 84
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=86.45 E-value=0.01 Score=60.70 Aligned_cols=164 Identities=21% Similarity=0.104 Sum_probs=76.3
Q ss_pred cCCC-CCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCCccc----CcCCCCCCccEEEEecccCCCCCC
Q 010381 322 LGRL-PNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL----SEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 322 l~~l-~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l----~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
+..+ ..++++++..|. ......+...+..++.++.+.++.|.+..-... ..... ..+..+.+.++......+
T Consensus 257 l~~~~~~l~~l~l~~nsi~~~~~~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~-~~~~~~~l~~~~~~~~~~ 335 (478)
T KOG4308|consen 257 LSVLSETLRVLDLSRNSITEKGVRDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERK-TPLLHLVLGGTGKGTRGG 335 (478)
T ss_pred hcccchhhhhhhhhcCCccccchHHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhc-ccchhhhccccCccchhH
Confidence 3344 566777777664 234445666666777777777777665421100 11122 344444444433211111
Q ss_pred CC-C----CCCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCCCcc----eeeeCCCCccccceeeecCCc
Q 010381 395 PT-L----EKLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMYWLD----EWTMGAGAMPKLESLIVDPCA 462 (512)
Q Consensus 395 ~~-l----~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~ 462 (512)
.. + ..-..+.....+++...+... .......-+.+..+++..+.... .++......+.++.++++.|.
T Consensus 336 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~l~~~~~~~~~l~~~~l~~n~ 415 (478)
T KOG4308|consen 336 TSVLAEADAQRQLLSELGISGNRVGEEGLALLVLAKSNPKSELLRLSLNSQVIEGRGALRLAAQLASNEKLEILDLSLNS 415 (478)
T ss_pred HHHHHHHHHHhhhhHHHHhhhccchHHHHHHHhhhhcccCcccchhhhhccccccHHHHHhhhhhhhcchhhhhhhhcCc
Confidence 11 0 000111112222222111110 00001112234555554432222 344456678889999998876
Q ss_pred ccCCCCcc-----cCCCCCCcEEEccCChH
Q 010381 463 YLRKLPEE-----LWCIQSLRKLDLHWPQT 487 (512)
Q Consensus 463 ~l~~lp~~-----~~~l~~L~~L~l~~~~~ 487 (512)
.-.+-+.. -.+. .++.+.++.++.
T Consensus 416 ~~~~~~~~l~~~~~~~~-~~~~~~l~~~~~ 444 (478)
T KOG4308|consen 416 LHDEGAEVLTEQLSRNG-SLKALRLSRNPI 444 (478)
T ss_pred cchhhHHHHHHhhhhcc-cchhhhhccChh
Confidence 54433221 1345 899999999884
No 85
>KOG4308 consensus LRR-containing protein [Function unknown]
Probab=84.06 E-value=0.023 Score=58.05 Aligned_cols=48 Identities=17% Similarity=0.152 Sum_probs=27.2
Q ss_pred ccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCC
Q 010381 316 SCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 316 ~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~ 363 (512)
......+..+++++.+.++.+. ......+...+.....+..+.+.++.
T Consensus 280 ~~L~~~l~~~~~l~~l~l~~n~l~~~~~~~~~~~l~~~~~~~~~~l~~~~ 329 (478)
T KOG4308|consen 280 RDLAEVLVSCRQLEELSLSNNPLTDYGVELLLEALERKTPLLHLVLGGTG 329 (478)
T ss_pred HHHHHHHhhhHHHHHhhcccCccccHHHHHHHHHhhhcccchhhhccccC
Confidence 3345556677788888888775 22222333444455566666666543
No 86
>smart00367 LRR_CC Leucine-rich repeat - CC (cysteine-containing) subfamily.
Probab=74.83 E-value=1.7 Score=24.32 Aligned_cols=16 Identities=25% Similarity=0.548 Sum_probs=9.3
Q ss_pred ccccceeeecCCcccC
Q 010381 450 MPKLESLIVDPCAYLR 465 (512)
Q Consensus 450 l~~L~~L~l~~c~~l~ 465 (512)
+++|+.|++++|+.++
T Consensus 1 c~~L~~L~l~~C~~it 16 (26)
T smart00367 1 CPNLRELDLSGCTNIT 16 (26)
T ss_pred CCCCCEeCCCCCCCcC
Confidence 3556666666665544
No 87
>PF13516 LRR_6: Leucine Rich repeat; PDB: 3RGZ_A 3RJ0_A 3RIZ_A 3RGX_A 1DFJ_I 2BNH_A 3VQ1_A 3VQ2_A 2Z64_A 2OMX_A ....
Probab=71.58 E-value=1.3 Score=24.20 Aligned_cols=11 Identities=27% Similarity=0.190 Sum_probs=3.6
Q ss_pred ccCeeeecCCC
Q 010381 235 LLKYLKLNIPS 245 (512)
Q Consensus 235 ~L~~L~l~~~~ 245 (512)
+|++|++++|.
T Consensus 3 ~L~~L~l~~n~ 13 (24)
T PF13516_consen 3 NLETLDLSNNQ 13 (24)
T ss_dssp T-SEEE-TSSB
T ss_pred CCCEEEccCCc
Confidence 33444444433
No 88
>smart00364 LRR_BAC Leucine-rich repeats, bacterial type.
Probab=71.28 E-value=2.5 Score=23.80 Aligned_cols=17 Identities=35% Similarity=0.440 Sum_probs=9.4
Q ss_pred ccCeeeecCCCCcccCh
Q 010381 235 LLKYLKLNIPSLKCLPS 251 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~ 251 (512)
+|++|++++|+++.+|+
T Consensus 3 ~L~~L~vs~N~Lt~LPe 19 (26)
T smart00364 3 SLKELNVSNNQLTSLPE 19 (26)
T ss_pred ccceeecCCCccccCcc
Confidence 45555555555555553
No 89
>PRK04841 transcriptional regulator MalT; Provisional
Probab=68.96 E-value=16 Score=41.25 Aligned_cols=118 Identities=13% Similarity=0.068 Sum_probs=72.3
Q ss_pred CCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhc-ccCCCCcchhhHhhhhcccCCCce
Q 010381 2 ENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPLENYLQGETIPTILSRIC-SVLELPFHLKICCIYLCVFPPSIE 79 (512)
Q Consensus 2 ~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~l-sY~~L~~~~k~cfl~~a~fp~~~~ 79 (512)
+.|+|.|+++..++..+. ..... ......+..... ..+.+.+. - .|+.||++.+..++..|+++ .
T Consensus 213 ~~t~Gwp~~l~l~~~~~~~~~~~~--~~~~~~~~~~~~------~~~~~~l~--~~v~~~l~~~~~~~l~~~a~~~---~ 279 (903)
T PRK04841 213 DDVEGWATALQLIALSARQNNSSL--HDSARRLAGINA------SHLSDYLV--EEVLDNVDLETRHFLLRCSVLR---S 279 (903)
T ss_pred HHhCChHHHHHHHHHHHhhCCCch--hhhhHhhcCCCc------hhHHHHHH--HHHHhcCCHHHHHHHHHhcccc---c
Confidence 468999999999988776 32100 111111111011 34555543 3 37899999999999999987 3
Q ss_pred eCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHhh
Q 010381 80 ISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVA 144 (512)
Q Consensus 80 i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~~ 144 (512)
|+.+ +...-. |. ..+...++.+...+++...... .+ ..+++|++++++.....
T Consensus 280 ~~~~-l~~~l~--~~------~~~~~~L~~l~~~~l~~~~~~~-~~--~~yr~H~L~r~~l~~~l 332 (903)
T PRK04841 280 MNDA-LIVRVT--GE------ENGQMRLEELERQGLFIQRMDD-SG--EWFRYHPLFASFLRHRC 332 (903)
T ss_pred CCHH-HHHHHc--CC------CcHHHHHHHHHHCCCeeEeecC-CC--CEEehhHHHHHHHHHHH
Confidence 4433 322221 21 1257889999999986543211 11 35788999999988754
No 90
>smart00365 LRR_SD22 Leucine-rich repeat, SDS22-like subfamily.
Probab=63.00 E-value=6.1 Score=22.27 Aligned_cols=14 Identities=29% Similarity=0.257 Sum_probs=6.8
Q ss_pred CCcEEEeccCCCCC
Q 010381 353 KLEWLKLVNESKPS 366 (512)
Q Consensus 353 ~L~~L~l~~~~~p~ 366 (512)
+|+.|+++.|.+..
T Consensus 3 ~L~~L~L~~NkI~~ 16 (26)
T smart00365 3 NLEELDLSQNKIKK 16 (26)
T ss_pred ccCEEECCCCccce
Confidence 44555555544443
No 91
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=57.09 E-value=3.5 Score=42.13 Aligned_cols=65 Identities=25% Similarity=0.235 Sum_probs=30.5
Q ss_pred CCCCCccEEEEecccCCCC-CCCCC-CCCcccceeEEEccc--ccCceeeeeCCCCCccccEEEecCCCCcc
Q 010381 374 QFPPSLTHLSLSNTELKED-PMPTL-EKLPYVQVLKLKQNS--YLGRKLACVGSGGFPELKVLHLKSMYWLD 441 (512)
Q Consensus 374 ~lp~~L~~L~L~~~~~~~~-~~~~l-~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~l~ 441 (512)
+. +.+..+.|++|++... ...++ ...|+|+.|+|++|. +.... ... --+...|++|-+.|++..+
T Consensus 216 n~-p~i~sl~lsnNrL~~Ld~~sslsq~apklk~L~LS~N~~~~~~~~-el~-K~k~l~Leel~l~GNPlc~ 284 (585)
T KOG3763|consen 216 NF-PEILSLSLSNNRLYHLDALSSLSQIAPKLKTLDLSHNHSKISSES-ELD-KLKGLPLEELVLEGNPLCT 284 (585)
T ss_pred CC-cceeeeecccchhhchhhhhHHHHhcchhheeecccchhhhcchh-hhh-hhcCCCHHHeeecCCcccc
Confidence 44 6667777777765431 11111 234666666666652 21111 111 1223456666666655444
No 92
>PF14162 YozD: YozD-like protein
Probab=47.95 E-value=30 Score=22.85 Aligned_cols=28 Identities=25% Similarity=0.478 Sum_probs=17.9
Q ss_pred HHcCCCC--CChHHHHHHHHHHHHhcCcee
Q 010381 90 EAEGFIP--YNSEETAEHHLKELIRRGFIQ 117 (512)
Q Consensus 90 ~~~g~~~--~~~~~~~~~~~~~L~~~~li~ 117 (512)
+..||++ ...++.++--|+.|+++|+|.
T Consensus 22 ~kRGyvP~e~El~eiADItFeYll~K~iId 51 (57)
T PF14162_consen 22 VKRGYVPTEEELEEIADITFEYLLEKCIID 51 (57)
T ss_pred HHccCCCcHHHHHHHHHHHHHHHHHHHhhh
Confidence 3447776 555666667777777777654
No 93
>smart00368 LRR_RI Leucine rich repeat, ribonuclease inhibitor type.
Probab=43.20 E-value=17 Score=20.69 Aligned_cols=13 Identities=31% Similarity=0.273 Sum_probs=6.7
Q ss_pred ccCeeeecCCCCc
Q 010381 235 LLKYLKLNIPSLK 247 (512)
Q Consensus 235 ~L~~L~l~~~~i~ 247 (512)
+|++|+|++|.+.
T Consensus 3 ~L~~LdL~~N~i~ 15 (28)
T smart00368 3 SLRELDLSNNKLG 15 (28)
T ss_pred ccCEEECCCCCCC
Confidence 4555555555543
No 94
>PF12802 MarR_2: MarR family; PDB: 3ECO_B 2QWW_B 3KP6_B 3KP4_B 3KP2_A 3KP5_A 3KP3_B 3KP7_A 3NQO_B 3K0L_B ....
Probab=30.09 E-value=1.8e+02 Score=19.72 Aligned_cols=59 Identities=17% Similarity=0.184 Sum_probs=40.8
Q ss_pred CCCcchhhHhhhhcccCCCceeCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCC
Q 010381 59 ELPFHLKICCIYLCVFPPSIEISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGG 125 (512)
Q Consensus 59 ~L~~~~k~cfl~~a~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~ 125 (512)
+|+...-.++.++.-+|.+ .+...++.+.+ .-........++.|.++|+|.......++
T Consensus 2 glt~~q~~vL~~l~~~~~~-~~t~~~la~~l-------~~~~~~vs~~v~~L~~~Glv~r~~~~~D~ 60 (62)
T PF12802_consen 2 GLTPSQFRVLMALARHPGE-ELTQSELAERL-------GISKSTVSRIVKRLEKKGLVERERDPGDR 60 (62)
T ss_dssp TSTHHHHHHHHHHHHSTTS-GEEHHHHHHHH-------TS-HHHHHHHHHHHHHTTSEEEEE-SSST
T ss_pred ccCHHHHHHHHHHHHCCCC-CcCHHHHHHHH-------CcCHHHHHHHHHHHHHCCCEEEeCCCCCC
Confidence 4555566677777777776 44567777666 23456678899999999999988765443
No 95
>KOG3763 consensus mRNA export factor TAP/MEX67 [RNA processing and modification]
Probab=24.91 E-value=43 Score=34.59 Aligned_cols=65 Identities=25% Similarity=0.150 Sum_probs=31.9
Q ss_pred cCCCCCcEEEeccCCCCCCccc-Cc-CCCCCCccEEEEecccCCCCCCCCCCC--CcccceeEEEccccc
Q 010381 349 CKLQKLEWLKLVNESKPSRMVL-SE-YQFPPSLTHLSLSNTELKEDPMPTLEK--LPYVQVLKLKQNSYL 414 (512)
Q Consensus 349 ~~l~~L~~L~l~~~~~p~L~~l-~~-~~lp~~L~~L~L~~~~~~~~~~~~l~~--l~~L~~L~l~~~~~~ 414 (512)
.+.+.+.++.|++|.+-.|..+ .+ ... |+|..|+|++|...-.....+.. ...|++|.+.||.+.
T Consensus 215 ~n~p~i~sl~lsnNrL~~Ld~~sslsq~a-pklk~L~LS~N~~~~~~~~el~K~k~l~Leel~l~GNPlc 283 (585)
T KOG3763|consen 215 ENFPEILSLSLSNNRLYHLDALSSLSQIA-PKLKTLDLSHNHSKISSESELDKLKGLPLEELVLEGNPLC 283 (585)
T ss_pred cCCcceeeeecccchhhchhhhhHHHHhc-chhheeecccchhhhcchhhhhhhcCCCHHHeeecCCccc
Confidence 3455666666666655443322 11 123 67777777776211111112211 223677777777654
No 96
>PF13730 HTH_36: Helix-turn-helix domain
Probab=23.78 E-value=2.2e+02 Score=18.79 Aligned_cols=51 Identities=27% Similarity=0.414 Sum_probs=30.6
Q ss_pred CCCcchhhHhhhhcccCCCce--e-CHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCce
Q 010381 59 ELPFHLKICCIYLCVFPPSIE--I-STRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFI 116 (512)
Q Consensus 59 ~L~~~~k~cfl~~a~fp~~~~--i-~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li 116 (512)
+|.+..+..+.+++-|..+.. + +.+++...- |. ........+++|+++|+|
T Consensus 2 ~Ls~~~~~v~~~l~~~~~~~~~~~pS~~~la~~~---g~----s~~Tv~~~i~~L~~~G~I 55 (55)
T PF13730_consen 2 NLSPTAKLVYLYLASYANKNGGCFPSQETLAKDL---GV----SRRTVQRAIKELEEKGLI 55 (55)
T ss_pred CCCHHHHHHHHHHHHhcCCCCCCCcCHHHHHHHH---Cc----CHHHHHHHHHHHHHCcCC
Confidence 466677777777666543222 2 233333222 32 367788899999999875
No 97
>PF04433 SWIRM: SWIRM domain; InterPro: IPR007526 The SWIRM domain is a small alpha-helical domain of about 85 amino acid residues found in eukaryotic chromosomal proteins. It is named after the proteins SWI3, RSC8 and MOIRA in which it was first recognised. This domain is predicted to mediate protein-protein interactions in the assembly of chromatin-protein complexes. The SWIRM domain can be linked to different domains, such as the ZZ-type zinc finger (IPR000433 from INTERPRO), the Myb DNA-binding domain (IPR001005 from INTERPRO), the HORMA domain (IPR003511 from INTERPRO), the amino-oxidase domain, the chromo domain (IPR000953 from INTERPRO), and the JAB1/PAD1 domain.; GO: 0005515 protein binding; PDB: 2Z3Y_A 2UXN_A 2Y48_A 2HKO_A 2XAF_A 2X0L_A 2XAJ_A 2UXX_A 2V1D_A 2L3D_A ....
Probab=20.32 E-value=81 Score=23.65 Aligned_cols=38 Identities=13% Similarity=0.121 Sum_probs=31.3
Q ss_pred cccCCCCcchhhHhhhhcc--cCCCceeCHHHHHHHHHHc
Q 010381 55 CSVLELPFHLKICCIYLCV--FPPSIEISTRQLYQLWEAE 92 (512)
Q Consensus 55 lsY~~L~~~~k~cfl~~a~--fp~~~~i~~~~Li~~w~~~ 92 (512)
++++.|.+.+|+.|-.+-. .|+.|.--++.++..|...
T Consensus 10 ~~~~~l~~~E~~~~~e~~~~~~p~~Yl~iRn~il~~w~~n 49 (86)
T PF04433_consen 10 FDPDKLSEIEKQLCPEFFIGKTPEQYLKIRNTILAEWRKN 49 (86)
T ss_dssp TTTTSS-HHHHHHCHHCTTSCHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCCHHHHHHhHHHhccCChHHHHHHHHHHHHHHHHC
Confidence 7889999988888888777 7888887889999999766
Done!