Query 010381
Match_columns 512
No_of_seqs 349 out of 4288
Neff 9.9
Searched_HMMs 29240
Date Mon Mar 25 05:35:02 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010381.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010381hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 3rgz_A Protein brassinosteroid 100.0 7.6E-31 2.6E-35 285.3 13.9 335 161-510 294-764 (768)
2 3v47_A TOLL-like receptor 5B a 100.0 4.2E-29 1.4E-33 255.7 20.2 317 159-486 28-406 (455)
3 3rgz_A Protein brassinosteroid 100.0 4.1E-29 1.4E-33 271.7 16.3 314 160-486 199-549 (768)
4 3vq2_A TLR4, TOLL-like recepto 100.0 2.1E-28 7.3E-33 259.6 18.6 131 159-294 30-167 (606)
5 4eco_A Uncharacterized protein 100.0 1.8E-28 6E-33 260.8 15.8 264 211-486 305-598 (636)
6 3o6n_A APL1; leucine-rich repe 100.0 3.9E-28 1.3E-32 243.3 15.9 300 161-486 45-350 (390)
7 4fmz_A Internalin; leucine ric 100.0 1.8E-27 6.2E-32 234.6 19.9 298 161-486 44-344 (347)
8 2z63_A TOLL-like receptor 4, v 100.0 1.8E-27 6.1E-32 250.7 20.7 112 372-486 417-529 (570)
9 2id5_A Lingo-1, leucine rich r 100.0 2.3E-27 7.7E-32 244.3 20.5 290 181-486 30-331 (477)
10 2z7x_B TOLL-like receptor 1, v 100.0 8.5E-28 2.9E-32 250.2 17.3 310 159-486 19-479 (520)
11 3t6q_A CD180 antigen; protein- 100.0 5E-27 1.7E-31 249.1 23.3 269 212-484 255-532 (606)
12 3a79_B TLR6, VLRB.59, TOLL-lik 100.0 2.1E-27 7.3E-32 249.5 19.9 309 159-486 50-508 (562)
13 4eco_A Uncharacterized protein 100.0 1.1E-27 3.7E-32 254.8 17.5 295 181-486 247-577 (636)
14 3o6n_A APL1; leucine-rich repe 99.9 3.7E-27 1.3E-31 236.2 19.8 283 181-486 43-329 (390)
15 3t6q_A CD180 antigen; protein- 99.9 8.3E-28 2.8E-32 255.1 16.0 319 159-486 31-436 (606)
16 4ecn_A Leucine-rich repeat pro 99.9 4.4E-27 1.5E-31 254.9 21.8 314 159-486 489-838 (876)
17 4ecn_A Leucine-rich repeat pro 99.9 1.4E-27 4.8E-32 258.8 17.7 314 160-486 447-817 (876)
18 4fmz_A Internalin; leucine ric 99.9 3.5E-27 1.2E-31 232.5 18.5 281 181-486 42-322 (347)
19 3oja_B Anopheles plasmodium-re 99.9 7.7E-27 2.6E-31 246.7 19.8 286 181-486 49-356 (597)
20 3vq2_A TLR4, TOLL-like recepto 99.9 2.4E-27 8.1E-32 251.6 15.5 178 302-486 348-556 (606)
21 3oja_B Anopheles plasmodium-re 99.9 2.1E-27 7.2E-32 251.0 15.0 282 161-464 51-358 (597)
22 3v47_A TOLL-like receptor 5B a 99.9 1.8E-26 6.2E-31 236.1 18.2 296 181-486 28-382 (455)
23 1o6v_A Internalin A; bacterial 99.9 5.6E-26 1.9E-30 233.0 20.9 298 161-486 68-386 (466)
24 2z7x_B TOLL-like receptor 1, v 99.9 1.2E-26 3.9E-31 241.7 16.1 308 164-486 3-455 (520)
25 2z81_A CD282 antigen, TOLL-lik 99.9 1.6E-26 5.6E-31 242.2 17.2 316 159-486 24-508 (549)
26 3j0a_A TOLL-like receptor 5; m 99.9 7.3E-26 2.5E-30 248.6 22.6 313 159-486 22-392 (844)
27 4fcg_A Uncharacterized protein 99.9 3.2E-26 1.1E-30 223.4 17.1 235 208-486 78-312 (328)
28 1o6v_A Internalin A; bacterial 99.9 6.9E-26 2.4E-30 232.3 20.1 298 161-486 46-364 (466)
29 3bz5_A Internalin-J, INLJ; leu 99.9 3.8E-25 1.3E-29 225.4 24.0 292 161-486 42-350 (457)
30 3a79_B TLR6, VLRB.59, TOLL-lik 99.9 4.5E-26 1.5E-30 239.4 17.6 140 163-313 33-178 (562)
31 2id5_A Lingo-1, leucine rich r 99.9 1.8E-25 6.3E-30 230.0 21.2 271 210-486 31-307 (477)
32 1ziw_A TOLL-like receptor 3; i 99.9 1.9E-25 6.3E-30 240.3 19.7 321 159-486 23-364 (680)
33 1ziw_A TOLL-like receptor 3; i 99.9 3.1E-25 1E-29 238.6 19.7 317 161-485 49-440 (680)
34 3j0a_A TOLL-like receptor 5; m 99.9 3.2E-25 1.1E-29 243.5 20.0 310 166-486 9-373 (844)
35 1ogq_A PGIP-2, polygalacturona 99.9 2.1E-26 7.3E-31 223.3 8.8 245 212-464 51-304 (313)
36 2z63_A TOLL-like receptor 4, v 99.9 2.8E-25 9.7E-30 233.8 17.2 317 159-486 26-505 (570)
37 3bz5_A Internalin-J, INLJ; leu 99.9 7.9E-25 2.7E-29 223.1 19.7 270 181-486 40-329 (457)
38 2z81_A CD282 antigen, TOLL-lik 99.9 2E-25 6.9E-30 233.9 14.5 295 182-486 25-421 (549)
39 1xku_A Decorin; proteoglycan, 99.9 2.5E-24 8.7E-29 210.5 19.2 283 184-485 32-329 (330)
40 1xku_A Decorin; proteoglycan, 99.9 8.7E-25 3E-29 213.8 14.6 262 212-486 32-304 (330)
41 2ft3_A Biglycan; proteoglycan, 99.9 8E-25 2.7E-29 214.2 14.3 263 211-486 54-331 (332)
42 4g8a_A TOLL-like receptor 4; l 99.9 7.7E-24 2.6E-28 225.6 22.4 320 158-486 49-578 (635)
43 2ft3_A Biglycan; proteoglycan, 99.9 3.6E-24 1.2E-28 209.6 17.5 262 211-486 33-305 (332)
44 1ogq_A PGIP-2, polygalacturona 99.9 3.7E-25 1.3E-29 214.6 9.3 249 183-442 50-306 (313)
45 4fcg_A Uncharacterized protein 99.9 8.5E-24 2.9E-28 206.2 11.5 219 182-436 80-310 (328)
46 1jl5_A Outer protein YOPM; leu 99.9 1.1E-22 3.8E-27 207.0 19.9 287 159-486 89-407 (454)
47 2z80_A TOLL-like receptor 2, v 99.9 1.9E-23 6.6E-28 206.2 12.0 269 181-486 29-312 (353)
48 2z66_A Variable lymphocyte rec 99.9 5E-23 1.7E-27 199.0 13.0 239 215-486 11-259 (306)
49 4g8a_A TOLL-like receptor 4; l 99.9 4.3E-22 1.5E-26 212.1 18.3 294 157-463 72-579 (635)
50 3g06_A SSPH2 (leucine-rich rep 99.9 1.9E-21 6.4E-26 204.2 21.2 255 162-486 41-295 (622)
51 2z66_A Variable lymphocyte rec 99.9 1.6E-22 5.5E-27 195.5 11.2 222 212-438 29-259 (306)
52 1jl5_A Outer protein YOPM; leu 99.9 2.6E-21 8.8E-26 196.9 20.4 282 162-486 72-368 (454)
53 2z80_A TOLL-like receptor 2, v 99.9 2.6E-22 9E-27 198.0 12.1 264 166-465 36-315 (353)
54 3zyj_A Leucine-rich repeat-con 99.9 1.2E-21 4E-26 199.3 17.2 222 211-462 64-290 (440)
55 3zyi_A Leucine-rich repeat-con 99.9 9.1E-22 3.1E-26 200.9 15.8 102 211-312 75-179 (452)
56 1ozn_A Reticulon 4 receptor; N 99.9 3.5E-22 1.2E-26 191.0 10.2 247 211-485 32-284 (285)
57 1wwl_A Monocyte differentiatio 99.9 4E-23 1.4E-27 200.2 1.4 248 209-486 41-307 (312)
58 3g06_A SSPH2 (leucine-rich rep 99.9 4.2E-21 1.4E-25 201.5 15.5 235 159-437 59-294 (622)
59 1z7x_W Ribonuclease inhibitor; 99.9 6.6E-24 2.3E-28 217.4 -5.7 320 161-486 28-409 (461)
60 3o53_A Protein LRIM1, AGAP0063 99.9 8.9E-23 3E-27 198.2 2.1 246 204-466 27-277 (317)
61 3zyi_A Leucine-rich repeat-con 99.8 9.6E-21 3.3E-25 193.3 16.7 242 212-486 55-301 (452)
62 3zyj_A Leucine-rich repeat-con 99.8 1.5E-20 5E-25 191.2 16.6 240 164-413 46-291 (440)
63 1z7x_W Ribonuclease inhibitor; 99.8 9.5E-24 3.2E-28 216.2 -7.5 326 160-486 2-381 (461)
64 3o53_A Protein LRIM1, AGAP0063 99.8 1.3E-21 4.4E-26 190.0 7.8 259 211-486 10-273 (317)
65 1wwl_A Monocyte differentiatio 99.8 3.6E-22 1.2E-26 193.5 3.4 241 182-463 42-308 (312)
66 1ozn_A Reticulon 4 receptor; N 99.8 2.9E-20 9.8E-25 177.7 15.4 220 214-486 14-236 (285)
67 3ogk_B Coronatine-insensitive 99.8 2E-21 6.7E-26 205.4 3.7 320 161-486 112-524 (592)
68 3oja_A Leucine-rich immune mol 99.8 2.6E-21 8.9E-26 198.8 4.0 234 209-459 32-270 (487)
69 3oja_A Leucine-rich immune mol 99.8 1.6E-20 5.4E-25 193.0 9.3 234 232-482 32-269 (487)
70 3ogk_B Coronatine-insensitive 99.8 1.5E-21 5.2E-26 206.3 -2.0 302 181-485 190-548 (592)
71 2z62_A TOLL-like receptor 4, v 99.8 8E-19 2.7E-23 166.8 14.0 199 212-414 29-237 (276)
72 2z62_A TOLL-like receptor 4, v 99.8 5.2E-19 1.8E-23 168.1 12.6 215 216-485 12-234 (276)
73 1h6u_A Internalin H; cell adhe 99.8 6.9E-19 2.4E-23 169.9 13.1 191 210-415 40-231 (308)
74 2ast_B S-phase kinase-associat 99.8 2.4E-20 8.3E-25 182.6 2.4 230 211-472 70-314 (336)
75 2o6q_A Variable lymphocyte rec 99.8 2.4E-18 8.3E-23 162.9 16.2 195 212-437 17-215 (270)
76 1p9a_G Platelet glycoprotein I 99.8 1.3E-18 4.5E-23 166.3 14.4 199 208-438 7-206 (290)
77 3rfs_A Internalin B, repeat mo 99.8 5.2E-19 1.8E-23 167.6 11.3 206 210-475 40-246 (272)
78 2p1m_B Transport inhibitor res 99.8 2.6E-20 8.9E-25 196.9 2.2 319 161-486 105-517 (594)
79 3rfs_A Internalin B, repeat mo 99.8 6.9E-19 2.4E-23 166.8 11.0 209 215-485 23-232 (272)
80 1p9a_G Platelet glycoprotein I 99.8 4.9E-18 1.7E-22 162.3 16.6 199 230-486 6-206 (290)
81 2a5y_B CED-4; apoptosis; HET: 99.8 1.1E-19 3.8E-24 189.3 4.1 133 1-149 323-473 (549)
82 2ca6_A RAN GTPase-activating p 99.8 2E-20 6.9E-25 186.9 -1.9 261 204-485 26-340 (386)
83 1h6u_A Internalin H; cell adhe 99.8 3.2E-18 1.1E-22 165.2 13.0 192 181-391 39-231 (308)
84 2xwt_C Thyrotropin receptor; s 99.8 6.1E-18 2.1E-22 157.1 13.3 204 223-486 23-237 (239)
85 2ca6_A RAN GTPase-activating p 99.8 5.7E-20 1.9E-24 183.6 -0.5 256 181-460 30-339 (386)
86 2ast_B S-phase kinase-associat 99.7 5.2E-20 1.8E-24 180.3 -1.1 247 208-486 44-304 (336)
87 2o6q_A Variable lymphocyte rec 99.7 1.8E-17 6.2E-22 156.9 15.0 197 235-486 17-216 (270)
88 2xwt_C Thyrotropin receptor; s 99.7 5.2E-18 1.8E-22 157.5 9.9 196 211-462 31-237 (239)
89 4glp_A Monocyte differentiatio 99.7 6.2E-18 2.1E-22 163.5 9.9 230 181-438 62-305 (310)
90 3goz_A Leucine-rich repeat-con 99.7 1.7E-18 5.8E-23 171.2 5.5 91 204-294 15-123 (362)
91 2p1m_B Transport inhibitor res 99.7 6.1E-20 2.1E-24 194.0 -5.3 298 181-486 103-492 (594)
92 3goz_A Leucine-rich repeat-con 99.7 4.7E-19 1.6E-23 175.3 -0.9 250 215-465 2-298 (362)
93 4ay9_X Follicle-stimulating ho 99.7 3.8E-17 1.3E-21 160.7 12.7 237 214-483 12-254 (350)
94 4glp_A Monocyte differentiatio 99.7 1.4E-17 4.9E-22 160.9 9.2 181 211-414 64-264 (310)
95 3m19_A Variable lymphocyte rec 99.7 2.9E-16 9.9E-21 146.8 13.7 178 211-415 14-193 (251)
96 1h6t_A Internalin B; cell adhe 99.7 9.4E-17 3.2E-21 153.5 10.3 171 209-415 44-214 (291)
97 1m9s_A Internalin B; cell inva 99.6 3.5E-16 1.2E-20 163.9 10.5 151 208-392 62-212 (605)
98 3m19_A Variable lymphocyte rec 99.6 1.2E-15 4E-20 142.7 12.6 176 234-438 14-190 (251)
99 4ezg_A Putative uncharacterize 99.6 1.2E-15 4.2E-20 136.9 10.7 153 231-414 41-194 (197)
100 3cvr_A Invasion plasmid antige 99.6 1.2E-15 4.2E-20 158.1 11.7 179 212-417 60-246 (571)
101 1h6t_A Internalin B; cell adhe 99.6 2.4E-15 8.1E-20 143.7 12.6 182 217-438 30-211 (291)
102 4ay9_X Follicle-stimulating ho 99.6 1.8E-15 6E-20 148.8 12.0 217 211-461 30-256 (350)
103 4ezg_A Putative uncharacterize 99.6 1.1E-15 3.8E-20 137.2 9.3 150 210-389 43-193 (197)
104 1xeu_A Internalin C; cellular 99.6 5.5E-16 1.9E-20 145.9 6.9 170 210-416 18-187 (263)
105 2o6s_A Variable lymphocyte rec 99.6 2.3E-15 7.9E-20 136.4 10.5 175 215-401 11-189 (208)
106 1m9s_A Internalin B; cell inva 99.6 4.1E-15 1.4E-19 155.8 13.8 188 215-416 25-212 (605)
107 3sfz_A APAF-1, apoptotic pepti 99.6 2.1E-15 7E-20 173.0 7.0 131 1-147 314-452 (1249)
108 3cvr_A Invasion plasmid antige 99.6 6.3E-15 2.1E-19 152.8 9.9 185 235-472 60-251 (571)
109 4b8c_D Glucose-repressible alc 99.6 2.5E-15 8.5E-20 161.4 6.9 151 161-313 173-325 (727)
110 2o6s_A Variable lymphocyte rec 99.6 1.1E-14 3.9E-19 131.8 10.1 75 236-312 9-84 (208)
111 1xeu_A Internalin C; cellular 99.5 1E-14 3.6E-19 137.1 9.2 150 208-392 38-187 (263)
112 1dce_A Protein (RAB geranylger 99.5 1.6E-16 5.3E-21 165.6 -4.4 120 353-482 442-567 (567)
113 1vt4_I APAF-1 related killer D 99.5 6E-15 2.1E-19 157.4 5.5 111 4-140 323-436 (1221)
114 1dce_A Protein (RAB geranylger 99.5 1.2E-16 4E-21 166.6 -8.4 201 231-457 346-566 (567)
115 3e6j_A Variable lymphocyte rec 99.5 1.2E-13 4.1E-18 127.0 11.7 121 214-336 22-145 (229)
116 2xot_A Amphoterin-induced prot 99.5 3E-14 1E-18 140.6 7.8 121 214-336 21-146 (361)
117 2v9t_B SLIT homolog 2 protein 99.5 1.2E-13 4E-18 126.2 11.0 102 211-312 32-136 (220)
118 2v70_A SLIT-2, SLIT homolog 2 99.5 9.8E-14 3.4E-18 126.7 9.9 100 213-312 34-137 (220)
119 3e6j_A Variable lymphocyte rec 99.5 3.6E-13 1.2E-17 123.8 13.2 128 181-313 38-168 (229)
120 2v70_A SLIT-2, SLIT homolog 2 99.4 2.1E-13 7.1E-18 124.5 10.0 151 214-415 14-167 (220)
121 2v9t_B SLIT homolog 2 protein 99.4 5.3E-13 1.8E-17 121.8 12.5 127 182-313 31-161 (220)
122 2ell_A Acidic leucine-rich nuc 99.4 1.9E-13 6.6E-18 119.1 9.0 132 208-363 21-158 (168)
123 2je0_A Acidic leucine-rich nuc 99.4 1.6E-13 5.4E-18 117.1 7.8 129 208-360 14-148 (149)
124 3sb4_A Hypothetical leucine ri 99.4 6.9E-13 2.4E-17 129.0 12.3 285 181-482 23-328 (329)
125 2je0_A Acidic leucine-rich nuc 99.4 1.1E-13 3.6E-18 118.2 5.6 127 181-311 15-147 (149)
126 2ell_A Acidic leucine-rich nuc 99.4 2.7E-13 9.3E-18 118.2 8.2 128 181-312 22-155 (168)
127 1z6t_A APAF-1, apoptotic prote 99.4 2E-13 6.7E-18 144.0 6.1 128 2-143 315-448 (591)
128 1a9n_A U2A', U2A'; complex (nu 99.4 5.4E-13 1.9E-17 117.2 7.7 126 208-336 16-150 (176)
129 1a9n_A U2A', U2A'; complex (nu 99.4 8.2E-13 2.8E-17 116.1 8.8 126 181-313 17-149 (176)
130 2xot_A Amphoterin-induced prot 99.4 9.3E-13 3.2E-17 129.8 9.0 126 182-313 38-172 (361)
131 2wfh_A SLIT homolog 2 protein 99.3 6.4E-12 2.2E-16 112.0 12.5 121 214-336 13-136 (193)
132 1w8a_A SLIT protein; signaling 99.3 3.8E-12 1.3E-16 113.5 10.6 121 214-336 11-136 (192)
133 4b8c_D Glucose-repressible alc 99.3 6.6E-14 2.2E-18 150.3 -1.4 193 181-411 171-369 (727)
134 1w8a_A SLIT protein; signaling 99.3 6.5E-12 2.2E-16 111.9 8.7 102 212-313 30-135 (192)
135 1ds9_A Outer arm dynein; leuci 99.3 4.2E-13 1.4E-17 120.4 0.7 126 208-358 45-180 (198)
136 3sb4_A Hypothetical leucine ri 99.3 3.1E-11 1.1E-15 117.3 12.6 281 161-458 25-328 (329)
137 2wfh_A SLIT homolog 2 protein 99.2 3.3E-11 1.1E-15 107.4 10.3 103 211-313 31-135 (193)
138 1ds9_A Outer arm dynein; leuci 99.2 1.6E-13 5.5E-18 123.1 -6.1 111 225-363 39-151 (198)
139 2o6r_A Variable lymphocyte rec 99.2 1.5E-10 5E-15 101.6 12.4 121 214-336 10-134 (177)
140 4fdw_A Leucine rich hypothetic 99.1 1.1E-09 3.8E-14 108.9 17.7 240 208-486 133-381 (401)
141 2o6r_A Variable lymphocyte rec 99.1 3.2E-10 1.1E-14 99.5 11.2 125 354-486 9-135 (177)
142 2r9u_A Variable lymphocyte rec 99.1 4.2E-10 1.4E-14 98.4 11.6 98 214-313 15-114 (174)
143 3g39_A Variable lymphocyte rec 99.1 3E-10 1E-14 98.9 10.4 99 213-313 11-111 (170)
144 4fdw_A Leucine rich hypothetic 99.0 6.9E-09 2.3E-13 103.2 18.6 234 210-486 112-356 (401)
145 3un9_A NLR family member X1; l 99.0 9.7E-11 3.3E-15 115.4 4.4 164 183-364 72-251 (372)
146 2r9u_A Variable lymphocyte rec 99.0 5.2E-10 1.8E-14 97.7 8.2 100 186-293 15-118 (174)
147 3g39_A Variable lymphocyte rec 99.0 7.6E-10 2.6E-14 96.3 7.9 102 185-294 11-116 (170)
148 4fs7_A Uncharacterized protein 98.8 5.7E-08 1.9E-12 96.6 16.2 281 181-485 69-376 (394)
149 3un9_A NLR family member X1; l 98.8 4.6E-10 1.6E-14 110.5 0.0 137 210-364 71-223 (372)
150 2ifg_A High affinity nerve gro 98.7 3.1E-08 1.1E-12 96.7 10.5 76 217-293 14-93 (347)
151 2ifg_A High affinity nerve gro 98.7 4.3E-08 1.5E-12 95.7 8.9 91 202-293 23-116 (347)
152 4gt6_A Cell surface protein; l 98.6 2E-06 6.7E-11 85.4 19.5 283 184-489 65-371 (394)
153 2ra8_A Uncharacterized protein 98.5 1.2E-08 4.1E-13 99.6 -0.5 138 344-486 164-318 (362)
154 4fs7_A Uncharacterized protein 98.5 4.6E-06 1.6E-10 82.7 17.1 262 204-485 64-353 (394)
155 1io0_A Tropomodulin; LRR prote 98.4 2.2E-07 7.6E-12 81.7 5.4 111 181-292 34-163 (185)
156 2ra8_A Uncharacterized protein 98.4 2.9E-07 9.9E-12 89.8 6.7 140 230-391 168-321 (362)
157 4gt6_A Cell surface protein; l 98.4 6.1E-06 2.1E-10 81.8 16.4 305 161-486 64-389 (394)
158 3e4g_A ATP synthase subunit S, 98.4 1.3E-07 4.4E-12 81.4 2.6 88 377-466 61-154 (176)
159 1io0_A Tropomodulin; LRR prote 98.2 5.7E-07 1.9E-11 79.1 3.3 117 203-337 28-162 (185)
160 3e4g_A ATP synthase subunit S, 98.1 9.5E-07 3.2E-11 75.9 2.8 84 401-486 61-150 (176)
161 4h09_A Hypothetical leucine ri 98.1 8.3E-05 2.8E-09 73.2 17.1 105 348-459 236-341 (379)
162 4h09_A Hypothetical leucine ri 97.9 0.00043 1.5E-08 68.0 17.8 129 347-484 212-342 (379)
163 3rw6_A Nuclear RNA export fact 97.8 1.9E-05 6.4E-10 73.1 5.4 78 208-286 167-257 (267)
164 3rw6_A Nuclear RNA export fact 97.7 2.4E-05 8.2E-10 72.4 5.3 66 231-297 167-237 (267)
165 1pgv_A TMD-1, tropomodulin TMD 96.8 0.0012 4.1E-08 57.7 5.0 110 181-291 39-168 (197)
166 1pgv_A TMD-1, tropomodulin TMD 96.3 0.0041 1.4E-07 54.2 5.0 88 203-290 33-136 (197)
167 3rfe_A Platelet glycoprotein I 95.4 0.021 7.2E-07 46.3 5.4 53 215-269 12-67 (130)
168 3rfe_A Platelet glycoprotein I 95.1 0.035 1.2E-06 44.9 5.9 54 237-292 11-67 (130)
169 2fna_A Conserved hypothetical 51.3 16 0.00055 34.2 5.1 113 2-139 237-355 (357)
170 2qen_A Walker-type ATPase; unk 48.4 30 0.001 32.2 6.5 112 2-139 233-347 (350)
171 2vda_B Maltoporin; sugar trans 42.9 19 0.00064 18.9 2.1 18 2-19 6-23 (28)
172 1w5s_A Origin recognition comp 30.4 1.4E+02 0.0048 28.3 8.2 69 49-120 297-372 (412)
No 1
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.97 E-value=7.6e-31 Score=285.29 Aligned_cols=335 Identities=19% Similarity=0.177 Sum_probs=177.6
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcc-c
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLF-L 235 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~-~ 235 (512)
..++++.+..+......+.. .+++|++|.+.+|...+ .+ ...+..+++|++|++++|.++ .+|..+..++ +
T Consensus 294 ~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~----~ip~~~l~~l~~L~~L~Ls~n~l~~~~p~~l~~l~~~ 369 (768)
T 3rgz_A 294 DTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSG----ELPMDTLLKMRGLKVLDLSFNEFSGELPESLTNLSAS 369 (768)
T ss_dssp TTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEE----ECCHHHHTTCTTCCEEECCSSEEEECCCTTHHHHTTT
T ss_pred CcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccC----cCCHHHHhcCCCCCEEeCcCCccCccccHHHHhhhcC
Confidence 34455555433333222222 45555555555554432 23 232266666666666666655 4554444333 3
Q ss_pred --------------------------cCeeeecCCCCc-ccChhhhcCcCCcEEecCCcccc-ccchhhhccccCceeec
Q 010381 236 --------------------------LKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 236 --------------------------L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l 287 (512)
|++|++++|.++ .+|..++++++|++|++++|.+. .+|..++++++|++|++
T Consensus 370 L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~p~~l~~l~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~L 449 (768)
T 3rgz_A 370 LLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNNGFTGKIPPTLSNCSELVSLHLSFNYLSGTIPSSLGSLSKLRDLKL 449 (768)
T ss_dssp CSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSSEEEEECCGGGGGCTTCCEEECCSSEEESCCCGGGGGCTTCCEEEC
T ss_pred CcEEEccCCCcCCCcChhhhhcccCCccEEECCCCccccccCHHHhcCCCCCEEECcCCcccCcccHHHhcCCCCCEEEC
Confidence 333333333333 34444555555555555555442 34444555555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC-
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK- 364 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~- 364 (512)
++|.+.+.+|..++.+++|+.|++++ .+ +..|..++.+++|+.|++++| .....+|..++.+++|+.|++++|.+
T Consensus 450 ~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~L~~N--~l~~~~p~~~~~l~~L~~L~L~~N~l~ 527 (768)
T 3rgz_A 450 WLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSGLSNCTNLNWISLSNN--RLTGEIPKWIGRLENLAILKLSNNSFS 527 (768)
T ss_dssp CSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSS--CCCSCCCGGGGGCTTCCEEECCSSCCE
T ss_pred CCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHHHhcCCCCCEEEccCC--ccCCcCChHHhcCCCCCEEECCCCccc
Confidence 55555555555555555555555543 11 234445555555555555555 24444555555555555555555433
Q ss_pred ---CCCcccCcCCCCCCccEEEEecccCCCCCCC----------------------------------------------
Q 010381 365 ---PSRMVLSEYQFPPSLTHLSLSNTELKEDPMP---------------------------------------------- 395 (512)
Q Consensus 365 ---p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~---------------------------------------------- 395 (512)
|. .+..+ ++|+.|++++|.+.+..|.
T Consensus 528 ~~~p~----~l~~l-~~L~~L~Ls~N~l~g~ip~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 602 (768)
T 3rgz_A 528 GNIPA----ELGDC-RSLIWLDLNTNLFNGTIPAAMFKQSGKIAANFIAGKRYVYIKNDGMKKECHGAGNLLEFQGIRSE 602 (768)
T ss_dssp EECCG----GGGGC-TTCCEEECCSSEEESBCCGGGGTTTTCBCCSTTCSCEEEEEECCSCCTTCCSSEEEEECTTCCGG
T ss_pred CcCCH----HHcCC-CCCCEEECCCCccCCcCChHHhcccchhhhhccccccccccccccccccccccccccccccccch
Confidence 33 45555 6666666666654433222
Q ss_pred ------------------------CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCcc
Q 010381 396 ------------------------TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMP 451 (512)
Q Consensus 396 ------------------------~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~ 451 (512)
.++.+++|+.|++++|.+.+..+.. ++.+++|+.|+|++|.....+|..++.++
T Consensus 603 ~~~~l~~~~~~~l~~~~~~g~~~~~~~~l~~L~~LdLs~N~l~g~ip~~--l~~l~~L~~L~Ls~N~l~g~ip~~l~~L~ 680 (768)
T 3rgz_A 603 QLNRLSTRNPCNITSRVYGGHTSPTFDNNGSMMFLDMSYNMLSGYIPKE--IGSMPYLFILNLGHNDISGSIPDEVGDLR 680 (768)
T ss_dssp GGGGGGGTCCSCTTSCEEEEECCCSCSSSBCCCEEECCSSCCBSCCCGG--GGGCTTCCEEECCSSCCCSCCCGGGGGCT
T ss_pred hhhccccccccccccceecccCchhhhccccccEEECcCCcccccCCHH--HhccccCCEEeCcCCccCCCCChHHhCCC
Confidence 2333456666777766666655544 56677777888877554447777777888
Q ss_pred ccceeeecCCcccCCCCcccCCCCCCcEEEccCChH---------------------------HHHHHhcccCCCceeEE
Q 010381 452 KLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQT---------------------------ELRQRLRTFKDMEWRYD 504 (512)
Q Consensus 452 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~~---------------------------~~~~~~~~~~~~~~~~~ 504 (512)
+|+.|++++|.....+|..+..+++|++|++++|+- .. ..|.. ..+++|++
T Consensus 681 ~L~~LdLs~N~l~g~ip~~l~~l~~L~~L~ls~N~l~g~iP~~~~~~~~~~~~~~gN~~Lcg~~l-~~C~~-~~~~~~~~ 758 (768)
T 3rgz_A 681 GLNILDLSSNKLDGRIPQAMSALTMLTEIDLSNNNLSGPIPEMGQFETFPPAKFLNNPGLCGYPL-PRCDP-SNADGYAH 758 (768)
T ss_dssp TCCEEECCSSCCEECCCGGGGGCCCCSEEECCSSEEEEECCSSSSGGGSCGGGGCSCTEEESTTS-CCCCS-CC------
T ss_pred CCCEEECCCCcccCcCChHHhCCCCCCEEECcCCcccccCCCchhhccCCHHHhcCCchhcCCCC-cCCCC-CccCCCCC
Confidence 888888888877777888888888888888887731 01 13555 67888999
Q ss_pred EeeccC
Q 010381 505 IQLYPY 510 (512)
Q Consensus 505 i~~ip~ 510 (512)
|+|+|.
T Consensus 759 ~~~~~~ 764 (768)
T 3rgz_A 759 HQRSHH 764 (768)
T ss_dssp ------
T ss_pred CCCccc
Confidence 999986
No 2
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.96 E-value=4.2e-29 Score=255.70 Aligned_cols=317 Identities=18% Similarity=0.139 Sum_probs=246.5
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCc-cCccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQ-FPPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~-lp~~l~~l~ 234 (512)
.+..++++.+..+......+.. .+++|++|.+.++.... .+ +..|..+++|++|++++|.++. .|..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~~~~----~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAELNETSFSRLQDLQFLKVEQQTPGL----VIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCEECTTTTSSCTTCCEEECCCCSTTC----EECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCcCChhHhccCccccEEECcCCcccc----eECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 5578999999977777765554 89999999999987642 34 4444899999999999999984 478899999
Q ss_pred ccCeeeecCCCCcc-cChh--hhcCcCCcEEecCCcccccc-chh-hhccccCceeecCCcccCCCCCCCCCCC--CCCC
Q 010381 235 LLKYLKLNIPSLKC-LPSQ--LCTLLNLQTLQMPSSYIDQS-PED-IWMMQKLMHLNFGSITLPAPPTNYSSSL--KNLI 307 (512)
Q Consensus 235 ~L~~L~l~~~~i~~-lp~~--~~~l~~L~~L~L~~~~~~~l-p~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~ 307 (512)
+|++|++++|.++. .|.. ++.+++|++|++++|.+..+ |.. +.++++|++|++++|.+.+..|..+.++ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999999983 4544 88999999999999988776 544 7899999999999999988888888776 5678
Q ss_pred eeecCC-CCccCc---------hhcCCCCCCCeEEEeccchhhhhhHHHhccCC--------------------------
Q 010381 308 FVSALH-PISCTP---------DILGRLPNIQTLRISGDLSYYQSRVSKSLCKL-------------------------- 351 (512)
Q Consensus 308 ~l~l~~-~~~~~~---------~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l-------------------------- 351 (512)
.+++++ .+...+ ..+..+++|+.|++++| ......+..+...
T Consensus 184 ~L~l~~n~l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n--~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSITLQDMNEYWLGWEKCGNPFKNTSITTLDLSGN--GFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCBCTTCSTTCTTHHHHCCTTTTCEEEEEECTTS--CCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCcccccchhhccccccccccccceeeeEecCCC--cccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 888875 111111 12345678999999988 3444455443222
Q ss_pred -------------CCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCcee
Q 010381 352 -------------QKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKL 418 (512)
Q Consensus 352 -------------~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 418 (512)
++|+.|++++|.+.....-++..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+..+
T Consensus 262 ~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~ 340 (455)
T 3v47_A 262 KDPDNFTFKGLEASGVKTCDLSKSKIFALLKSVFSHF-TDLEQLTLAQNEINKIDDNAFWGLTHLLKLNLSQNFLGSIDS 340 (455)
T ss_dssp CCCCTTTTGGGTTSCCCEEECCSSCCCEECTTTTTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECG
T ss_pred ccCcccccccccccCceEEEecCccccccchhhcccC-CCCCEEECCCCcccccChhHhcCcccCCEEECCCCccCCcCh
Confidence 467777777665421100067788 999999999999988888899999999999999998865443
Q ss_pred eeeCCCCCccccEEEecCCCCccee-eeCCCCccccceeeecCCcccCCCCc-ccCCCCCCcEEEccCCh
Q 010381 419 ACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 419 ~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 486 (512)
.. ++++++|++|++++| .++.+ |..+..+++|++|++++|. ++.+|. .+..+++|++|++++|+
T Consensus 341 ~~--~~~l~~L~~L~Ls~N-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 406 (455)
T 3v47_A 341 RM--FENLDKLEVLDLSYN-HIRALGDQSFLGLPNLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 406 (455)
T ss_dssp GG--GTTCTTCCEEECCSS-CCCEECTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred hH--hcCcccCCEEECCCC-cccccChhhccccccccEEECCCCc-cccCCHhHhccCCcccEEEccCCC
Confidence 33 688999999999996 45555 6778899999999999998 445554 56899999999999875
No 3
>3rgz_A Protein brassinosteroid insensitive 1; phytohormone, leucine-rich RE receptor-like kinases, leucine-rich repeat; HET: NAG BLD; 2.28A {Arabidopsis thaliana} PDB: 3rgx_A* 3riz_A* 3rj0_A*
Probab=99.96 E-value=4.1e-29 Score=271.68 Aligned_cols=314 Identities=18% Similarity=0.137 Sum_probs=232.0
Q ss_pred CCceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC--------------
Q 010381 160 MANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD-------------- 224 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-------------- 224 (512)
...++++.+..+.....++.. .+++|++|.+.+|.+.. .++..+..+++|++|++++|.++
T Consensus 199 l~~L~~L~Ls~n~l~~~~~~l~~l~~L~~L~Ls~n~l~~----~~~~~l~~l~~L~~L~Ls~n~l~~~~~~~~l~~L~~L 274 (768)
T 3rgz_A 199 CVNLEFLDVSSNNFSTGIPFLGDCSALQHLDISGNKLSG----DFSRAISTCTELKLLNISSNQFVGPIPPLPLKSLQYL 274 (768)
T ss_dssp CTTCCEEECCSSCCCSCCCBCTTCCSCCEEECCSSCCCS----CHHHHTTTCSSCCEEECCSSCCEESCCCCCCTTCCEE
T ss_pred CCcCCEEECcCCcCCCCCcccccCCCCCEEECcCCcCCC----cccHHHhcCCCCCEEECCCCcccCccCccccCCCCEE
Confidence 456777777755554433334 67777777777776642 33333366666666666666544
Q ss_pred ---------ccCccccCc-cccCeeeecCCCCc-ccChhhhcCcCCcEEecCCcccc-ccchh-hhccccCceeecCCcc
Q 010381 225 ---------QFPPGLENL-FLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 225 ---------~lp~~l~~l-~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
.+|..+... ++|++|++++|.++ .+|..++++++|++|++++|.+. .+|.. +.++++|++|++++|.
T Consensus 275 ~L~~n~l~~~ip~~~~~~~~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L~L~~n~l~~~ip~~~l~~l~~L~~L~Ls~n~ 354 (768)
T 3rgz_A 275 SLAENKFTGEIPDFLSGACDTLTGLDLSGNHFYGAVPPFFGSCSLLESLALSSNNFSGELPMDTLLKMRGLKVLDLSFNE 354 (768)
T ss_dssp ECCSSEEEESCCCCSCTTCTTCSEEECCSSEEEECCCGGGGGCTTCCEEECCSSEEEEECCHHHHTTCTTCCEEECCSSE
T ss_pred ECcCCccCCccCHHHHhhcCcCCEEECcCCcCCCccchHHhcCCCccEEECCCCcccCcCCHHHHhcCCCCCEEeCcCCc
Confidence 444444443 66666666666666 56666667777777777777554 66654 6677777777777777
Q ss_pred cCCCCCCCCCCCC-CCCeeecCCC-C-ccCchhcCC--CCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC---
Q 010381 292 LPAPPTNYSSSLK-NLIFVSALHP-I-SCTPDILGR--LPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES--- 363 (512)
Q Consensus 292 ~~~~~p~~~~~l~-~L~~l~l~~~-~-~~~~~~l~~--l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~--- 363 (512)
+.+.+|..+.+++ +|+.++++++ + +..+..+.. +++|+.|++++| .....+|..+.++++|+.|++++|.
T Consensus 355 l~~~~p~~l~~l~~~L~~L~Ls~N~l~~~~~~~~~~~~~~~L~~L~L~~n--~l~~~~p~~l~~l~~L~~L~Ls~N~l~~ 432 (768)
T 3rgz_A 355 FSGELPESLTNLSASLLTLDLSSNNFSGPILPNLCQNPKNTLQELYLQNN--GFTGKIPPTLSNCSELVSLHLSFNYLSG 432 (768)
T ss_dssp EEECCCTTHHHHTTTCSEEECCSSEEEEECCTTTTCSTTCCCCEEECCSS--EEEEECCGGGGGCTTCCEEECCSSEEES
T ss_pred cCccccHHHHhhhcCCcEEEccCCCcCCCcChhhhhcccCCccEEECCCC--ccccccCHHHhcCCCCCEEECcCCcccC
Confidence 6666677666665 6777777641 0 234445544 678888888888 4556778888899999999999874
Q ss_pred -CCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcce
Q 010381 364 -KPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 364 -~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
+|. .+..+ ++|+.|++++|.+.+..|..++.+++|++|++++|.+.+..+.. ++.+++|++|++++|.....
T Consensus 433 ~~p~----~l~~l-~~L~~L~L~~n~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~--l~~l~~L~~L~L~~N~l~~~ 505 (768)
T 3rgz_A 433 TIPS----SLGSL-SKLRDLKLWLNMLEGEIPQELMYVKTLETLILDFNDLTGEIPSG--LSNCTNLNWISLSNNRLTGE 505 (768)
T ss_dssp CCCG----GGGGC-TTCCEEECCSSCCCSCCCGGGGGCTTCCEEECCSSCCCSCCCGG--GGGCTTCCEEECCSSCCCSC
T ss_pred cccH----HHhcC-CCCCEEECCCCcccCcCCHHHcCCCCceEEEecCCcccCcCCHH--HhcCCCCCEEEccCCccCCc
Confidence 355 67888 99999999999998888989999999999999999988776554 67899999999999766558
Q ss_pred eeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|..++.+++|+.|++++|.....+|..+..+++|+.|++++|+
T Consensus 506 ~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~L~~L~Ls~N~ 549 (768)
T 3rgz_A 506 IPKWIGRLENLAILKLSNNSFSGNIPAELGDCRSLIWLDLNTNL 549 (768)
T ss_dssp CCGGGGGCTTCCEEECCSSCCEEECCGGGGGCTTCCEEECCSSE
T ss_pred CChHHhcCCCCCEEECCCCcccCcCCHHHcCCCCCCEEECCCCc
Confidence 88889999999999999999888999999999999999999986
No 4
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.96 E-value=2.1e-28 Score=259.65 Aligned_cols=131 Identities=17% Similarity=0.167 Sum_probs=92.4
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~ 234 (512)
.+..++++.+..+.....+... .+++|++|++++|.+. .+ +..|.++++|++|++++|.++.+ |..|++++
T Consensus 30 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~-----~i~~~~~~~l~~L~~L~Ls~n~l~~~~p~~~~~l~ 104 (606)
T 3vq2_A 30 IPSSTKNIDLSFNPLKILKSYSFSNFSELQWLDLSRCEIE-----TIEDKAWHGLHHLSNLILTGNPIQSFSPGSFSGLT 104 (606)
T ss_dssp SCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCCCCTTSSTTCT
T ss_pred CCCCcCEEECCCCCcCEeChhhccCCccCcEEeCCCCccc-----ccCHHHhhchhhcCEeECCCCcccccChhhcCCcc
Confidence 4567778888766666655544 7788888888877665 33 33347778888888888777744 66777777
Q ss_pred ccCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccc--ccchhhhccccCceeecCCcccCC
Q 010381 235 LLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYID--QSPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~--~lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
+|++|++++|.++.+| ..++++++|++|++++|.+. .+|..++++++|++|++++|.+.+
T Consensus 105 ~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~Ls~n~l~~ 167 (606)
T 3vq2_A 105 SLENLVAVETKLASLESFPIGQLITLKKLNVAHNFIHSCKLPAYFSNLTNLVHVDLSYNYIQT 167 (606)
T ss_dssp TCCEEECTTSCCCCSSSSCCTTCTTCCEEECCSSCCCCCCCCGGGGTCTTCCEEECCSSCCCE
T ss_pred cCCEEEccCCccccccccccCCCCCCCEEeCCCCcccceechHhHhhcCCCCEEEccCCccee
Confidence 8888888777777555 55777777777777777665 467777777777777777776554
No 5
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.8e-28 Score=260.85 Aligned_cols=264 Identities=19% Similarity=0.224 Sum_probs=162.9
Q ss_pred CeeEEEEecCCcCCccCc--cccCccccCeeeecCCCCc-ccChhhhcCcCCcEEecCCccccccchhhhcccc-Cceee
Q 010381 211 KYLRVLDLGSAVLDQFPP--GLENLFLLKYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQK-LMHLN 286 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~-L~~L~ 286 (512)
++|++|++++|.++.+|. .++.+++|++|++++|.++ .+| .++.+++|++|++++|.+..+|..+.++++ |++|+
T Consensus 305 ~~L~~L~L~~n~l~~ip~~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~~lp~~l~~l~~~L~~L~ 383 (636)
T 4eco_A 305 EKIQIIYIGYNNLKTFPVETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQITEIPANFCGFTEQVENLS 383 (636)
T ss_dssp GTCCEEECCSSCCSSCCCHHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEEECCTTSEEECTTCCEEE
T ss_pred CCCCEEECCCCcCCccCchhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccccccHhhhhhcccCcEEE
Confidence 556666666666555555 5666666666666666666 555 555666666666666655566666666666 66666
Q ss_pred cCCcccCCCCCCCCCCCC--CCCeeecCC-CC-ccCchhcC-------CCCCCCeEEEeccchhhhhhHHHh-ccCCCCC
Q 010381 287 FGSITLPAPPTNYSSSLK--NLIFVSALH-PI-SCTPDILG-------RLPNIQTLRISGDLSYYQSRVSKS-LCKLQKL 354 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~--~L~~l~l~~-~~-~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L 354 (512)
+++|.+. .+|..++.+. +|+.|++++ .+ +..|..+. .+++|+.|++++|. .. .+|.. +..+++|
T Consensus 384 Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~--l~-~lp~~~~~~l~~L 459 (636)
T 4eco_A 384 FAHNKLK-YIPNIFDAKSVSVMSAIDFSYNEIGSVDGKNFDPLDPTPFKGINVSSINLSNNQ--IS-KFPKELFSTGSPL 459 (636)
T ss_dssp CCSSCCS-SCCSCCCTTCSSCEEEEECCSSCTTTTTTCSSCTTCSSCCCCCCEEEEECCSSC--CC-SCCTHHHHTTCCC
T ss_pred ccCCcCc-ccchhhhhcccCccCEEECcCCcCCCcchhhhcccccccccCCCCCEEECcCCc--cC-cCCHHHHccCCCC
Confidence 6666655 5555555443 566666654 11 22333344 55566666666662 22 33332 3446677
Q ss_pred cEEEeccCCCCCCcccCcCCCC------CCccEEEEecccCCCCCCCCCC--CCcccceeEEEcccccCceeeeeCCCCC
Q 010381 355 EWLKLVNESKPSRMVLSEYQFP------PSLTHLSLSNTELKEDPMPTLE--KLPYVQVLKLKQNSYLGRKLACVGSGGF 426 (512)
Q Consensus 355 ~~L~l~~~~~p~L~~l~~~~lp------~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (512)
+.|++++|.+..+..-.+...+ ++|+.|++++|.++ ..|..+. .+++|+.|++++|.+.+ .+.. +..+
T Consensus 460 ~~L~Ls~N~l~~i~~~~~~~~~~~~~~l~~L~~L~Ls~N~l~-~lp~~~~~~~l~~L~~L~Ls~N~l~~-ip~~--~~~l 535 (636)
T 4eco_A 460 SSINLMGNMLTEIPKNSLKDENENFKNTYLLTSIDLRFNKLT-KLSDDFRATTLPYLVGIDLSYNSFSK-FPTQ--PLNS 535 (636)
T ss_dssp SEEECCSSCCSBCCSSSSEETTEECTTGGGCCEEECCSSCCC-BCCGGGSTTTCTTCCEEECCSSCCSS-CCCG--GGGC
T ss_pred CEEECCCCCCCCcCHHHhccccccccccCCccEEECcCCcCC-ccChhhhhccCCCcCEEECCCCCCCC-cChh--hhcC
Confidence 7777776654321110111110 27888888888876 4555665 78888888888888776 3332 5678
Q ss_pred ccccEEEecC------CCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 427 PELKVLHLKS------MYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 427 ~~L~~L~L~~------~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++ +.....+|..++.+++|+.|++++|.. +.+|..+. ++|+.|++++|+
T Consensus 536 ~~L~~L~Ls~N~~ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l-~~ip~~~~--~~L~~L~Ls~N~ 598 (636)
T 4eco_A 536 STLKGFGIRNQRDAQGNRTLREWPEGITLCPSLTQLQIGSNDI-RKVNEKIT--PNISVLDIKDNP 598 (636)
T ss_dssp SSCCEEECCSCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSCC-CBCCSCCC--TTCCEEECCSCT
T ss_pred CCCCEEECCCCcccccCcccccChHHHhcCCCCCEEECCCCcC-CccCHhHh--CcCCEEECcCCC
Confidence 8888888843 334456777778888888888888875 77777654 788888888885
No 6
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.9e-28 Score=243.30 Aligned_cols=300 Identities=19% Similarity=0.188 Sum_probs=187.6
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++++.+..+....++... .+++|++|.+.++.+. .+ ...+..+++|++|++++|.++.++ ..++.+++|
T Consensus 45 ~~l~~l~l~~~~l~~l~~~~~~~l~~L~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 119 (390)
T 3o6n_A 45 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 119 (390)
T ss_dssp CCCSEEEEESCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEecCCchhhCChhHhcccccCcEEECCCCccc-----ccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCCCC
Confidence 34555555533333333332 4555555555555443 22 212255555555555555555332 334555555
Q ss_pred CeeeecCCCCcccChh-hhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC
Q 010381 237 KYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP 314 (512)
Q Consensus 237 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~ 314 (512)
++|++++|.++.+|.. ++++++|++|++++|.+..++. .+..+++|++|++++|.+... .++.+++|+.+++.+
T Consensus 120 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~---~~~~l~~L~~L~l~~- 195 (390)
T 3o6n_A 120 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHV---DLSLIPSLFHANVSY- 195 (390)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSSCCSBC---CGGGCTTCSEEECCS-
T ss_pred CEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCCcCCcc---ccccccccceeeccc-
Confidence 5555555555555544 2455555555555555544432 345555555555555554321 234445555555542
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
.....+....+|+.|+++++. ...++. ...++|+.|++++|.+.... ++..+ ++|++|++++|.+.+..+
T Consensus 196 --n~l~~~~~~~~L~~L~l~~n~---l~~~~~--~~~~~L~~L~l~~n~l~~~~--~l~~l-~~L~~L~Ls~n~l~~~~~ 265 (390)
T 3o6n_A 196 --NLLSTLAIPIAVEELDASHNS---INVVRG--PVNVELTILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNELEKIMY 265 (390)
T ss_dssp --SCCSEEECCSSCSEEECCSSC---CCEEEC--CCCSSCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCEEES
T ss_pred --ccccccCCCCcceEEECCCCe---eeeccc--cccccccEEECCCCCCcccH--HHcCC-CCccEEECCCCcCCCcCh
Confidence 112223344566666666662 111121 22467888888888776544 67788 999999999999887778
Q ss_pred CCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCC
Q 010381 395 PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCI 474 (512)
Q Consensus 395 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l 474 (512)
..++.+++|++|++++|.+.+.. .. ...+++|++|++++| .++.+|..+..+++|+.|++++|+ ++.+| +..+
T Consensus 266 ~~~~~l~~L~~L~L~~n~l~~~~--~~-~~~l~~L~~L~L~~n-~l~~~~~~~~~l~~L~~L~L~~N~-i~~~~--~~~~ 338 (390)
T 3o6n_A 266 HPFVKMQRLERLYISNNRLVALN--LY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTH 338 (390)
T ss_dssp GGGTTCSSCCEEECCSSCCCEEE--CS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTT
T ss_pred hHccccccCCEEECCCCcCcccC--cc-cCCCCCCCEEECCCC-cceecCccccccCcCCEEECCCCc-cceeC--chhh
Confidence 88999999999999999886532 22 567899999999995 677888778889999999999998 55555 6789
Q ss_pred CCCcEEEccCCh
Q 010381 475 QSLRKLDLHWPQ 486 (512)
Q Consensus 475 ~~L~~L~l~~~~ 486 (512)
++|+.|++++|+
T Consensus 339 ~~L~~L~l~~N~ 350 (390)
T 3o6n_A 339 HTLKNLTLSHND 350 (390)
T ss_dssp CCCSEEECCSSC
T ss_pred ccCCEEEcCCCC
Confidence 999999999987
No 7
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=1.8e-27 Score=234.60 Aligned_cols=298 Identities=14% Similarity=0.182 Sum_probs=242.0
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++++.+..+..... +.. .+++|++|.+.++.+. .++.+ ..+++|++|++++|.++.++ .+..+++|++|
T Consensus 44 ~~L~~L~l~~~~i~~~-~~~~~~~~L~~L~l~~n~i~-----~~~~~-~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~~L 115 (347)
T 4fmz_A 44 ESITKLVVAGEKVASI-QGIEYLTNLEYLNLNGNQIT-----DISPL-SNLVKLTNLYIGTNKITDIS-ALQNLTNLREL 115 (347)
T ss_dssp TTCSEEECCSSCCCCC-TTGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCG-GGTTCTTCSEE
T ss_pred ccccEEEEeCCccccc-hhhhhcCCccEEEccCCccc-----cchhh-hcCCcCCEEEccCCcccCch-HHcCCCcCCEE
Confidence 6788999986665554 334 8999999999999876 44444 99999999999999998775 58999999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
++++|.++.+|. +..+++|++|++++| .+..+ ..+..+++|++|++++|.+....+ +..+++|+.+++++ .+..
T Consensus 116 ~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~-~~~~~l~~L~~L~l~~~~~~~~~~--~~~l~~L~~L~l~~n~l~~ 191 (347)
T 4fmz_A 116 YLNEDNISDISP-LANLTKMYSLNLGANHNLSDL-SPLSNMTGLNYLTVTESKVKDVTP--IANLTDLYSLSLNYNQIED 191 (347)
T ss_dssp ECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCC-GGGTTCTTCCEEECCSSCCCCCGG--GGGCTTCSEEECTTSCCCC
T ss_pred ECcCCcccCchh-hccCCceeEEECCCCCCcccc-cchhhCCCCcEEEecCCCcCCchh--hccCCCCCEEEccCCcccc
Confidence 999999998876 889999999999999 44554 458999999999999998864333 88999999999986 3233
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
.+ .+..+++|+.|+++++. .... +. +..+++|+.|++++|.+..+. .+..+ ++|++|++++|.+++ .+.+
T Consensus 192 ~~-~~~~l~~L~~L~l~~n~--l~~~-~~-~~~~~~L~~L~l~~n~l~~~~--~~~~l-~~L~~L~l~~n~l~~--~~~~ 261 (347)
T 4fmz_A 192 IS-PLASLTSLHYFTAYVNQ--ITDI-TP-VANMTRLNSLKIGNNKITDLS--PLANL-SQLTWLEIGTNQISD--INAV 261 (347)
T ss_dssp CG-GGGGCTTCCEEECCSSC--CCCC-GG-GGGCTTCCEEECCSSCCCCCG--GGTTC-TTCCEEECCSSCCCC--CGGG
T ss_pred cc-cccCCCccceeecccCC--CCCC-ch-hhcCCcCCEEEccCCccCCCc--chhcC-CCCCEEECCCCccCC--ChhH
Confidence 33 38889999999999983 2222 22 778999999999999887654 36778 999999999999875 3568
Q ss_pred CCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCC
Q 010381 398 EKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSL 477 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L 477 (512)
..+++|++|++++|.+.+. .. +..+++|+.|++++|......+..++.+++|+.|++++|+ ++.++. +..+++|
T Consensus 262 ~~l~~L~~L~l~~n~l~~~--~~--~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~-l~~~~~-~~~l~~L 335 (347)
T 4fmz_A 262 KDLTKLKMLNVGSNQISDI--SV--LNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH-ITDIRP-LASLSKM 335 (347)
T ss_dssp TTCTTCCEEECCSSCCCCC--GG--GGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS-CCCCGG-GGGCTTC
T ss_pred hcCCCcCEEEccCCccCCC--hh--hcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc-cccccC-hhhhhcc
Confidence 8999999999999988764 22 5788999999999976544555667889999999999998 455544 8889999
Q ss_pred cEEEccCCh
Q 010381 478 RKLDLHWPQ 486 (512)
Q Consensus 478 ~~L~l~~~~ 486 (512)
++|++++|+
T Consensus 336 ~~L~l~~N~ 344 (347)
T 4fmz_A 336 DSADFANQV 344 (347)
T ss_dssp SEESSSCC-
T ss_pred ceeehhhhc
Confidence 999999997
No 8
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.95 E-value=1.8e-27 Score=250.68 Aligned_cols=112 Identities=20% Similarity=0.175 Sum_probs=90.5
Q ss_pred cCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCc
Q 010381 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAM 450 (512)
Q Consensus 372 ~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l 450 (512)
+..+ ++|++|++++|.+.+..+..+..+++|++|++++|.+.+...+.. +..+++|++|++++|. ++.+ |..+..+
T Consensus 417 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~p~~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 493 (570)
T 2z63_A 417 FLSL-RNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGNSFQENFLPDI-FTELRNLTFLDLSQCQ-LEQLSPTAFNSL 493 (570)
T ss_dssp TTTC-TTCCEEECTTSCCEECCTTTTTTCTTCCEEECTTCEEGGGEECSC-CTTCTTCCEEECTTSC-CCEECTTTTTTC
T ss_pred hhcC-CCCCEEeCcCCcccccchhhhhcCCcCcEEECcCCcCccccchhh-hhcccCCCEEECCCCc-cccCChhhhhcc
Confidence 4566 788888888888877777888889999999999988874333333 7889999999999964 5544 7778899
Q ss_pred cccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 451 PKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 451 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++|......|..+..+++|++|++++|+
T Consensus 494 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 529 (570)
T 2z63_A 494 SSLQVLNMASNQLKSVPDGIFDRLTSLQKIWLHTNP 529 (570)
T ss_dssp TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCEEeCCCCcCCCCCHHHhhcccCCcEEEecCCc
Confidence 999999999997555555668899999999999975
No 9
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.95 E-value=2.3e-27 Score=244.29 Aligned_cols=290 Identities=20% Similarity=0.179 Sum_probs=237.8
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~ 257 (512)
-.++++.|++.++.+. .+ +..|.++++|++|++++|.++.+ |..|+++++|++|++++|.++.+|.. +++++
T Consensus 30 ~~~~l~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 104 (477)
T 2id5_A 30 IPTETRLLDLGKNRIK-----TLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLS 104 (477)
T ss_dssp CCTTCSEEECCSSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCT
T ss_pred CCCCCcEEECCCCccc-----eECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCC
Confidence 4568999999999886 34 44449999999999999999854 78899999999999999999988865 68999
Q ss_pred CCcEEecCCcccccc-chhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEe
Q 010381 258 NLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRIS 334 (512)
Q Consensus 258 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~ 334 (512)
+|++|++++|.+..+ |..+.++++|++|++++|.+.+..|..+.++++|+.|++.+ .+...+ ..+..+++|+.|+++
T Consensus 105 ~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~l~ 184 (477)
T 2id5_A 105 NLTKLDISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKCNLTSIPTEALSHLHGLIVLRLR 184 (477)
T ss_dssp TCCEEECTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESCCCSSCCHHHHTTCTTCCEEEEE
T ss_pred CCCEEECCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCCcCcccChhHhcccCCCcEEeCC
Confidence 999999999988766 45688999999999999999877788999999999999986 333333 458899999999999
Q ss_pred ccchhhhhhHHHhccCCCCCcEEEeccCCC----CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEc
Q 010381 335 GDLSYYQSRVSKSLCKLQKLEWLKLVNESK----PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQ 410 (512)
Q Consensus 335 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~----p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~ 410 (512)
++ ......+..+..+++|+.|++++|.. |. ..... .+|++|++++|.++..++..+..+++|+.|++++
T Consensus 185 ~n--~i~~~~~~~~~~l~~L~~L~l~~~~~~~~~~~----~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~ 257 (477)
T 2id5_A 185 HL--NINAIRDYSFKRLYRLKVLEISHWPYLDTMTP----NCLYG-LNLTSLSITHCNLTAVPYLAVRHLVYLRFLNLSY 257 (477)
T ss_dssp SC--CCCEECTTCSCSCTTCCEEEEECCTTCCEECT----TTTTT-CCCSEEEEESSCCCSCCHHHHTTCTTCCEEECCS
T ss_pred CC--cCcEeChhhcccCcccceeeCCCCccccccCc----ccccC-ccccEEECcCCcccccCHHHhcCccccCeeECCC
Confidence 98 34444445788899999999998643 33 34445 6999999999998865556788999999999999
Q ss_pred ccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCccccceeeecCCcccCCCCc-ccCCCCCCcEEEccCCh
Q 010381 411 NSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~~ 486 (512)
|.+.+..... +..+++|+.|+|++| .+..+ +..+..+++|+.|++++|. ++.+|. .+..+++|++|++++|+
T Consensus 258 n~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 331 (477)
T 2id5_A 258 NPISTIEGSM--LHELLRLQEIQLVGG-QLAVVEPYAFRGLNYLRVLNVSGNQ-LTTLEESVFHSVGNLETLILDSNP 331 (477)
T ss_dssp SCCCEECTTS--CTTCTTCCEEECCSS-CCSEECTTTBTTCTTCCEEECCSSC-CSCCCGGGBSCGGGCCEEECCSSC
T ss_pred CcCCccChhh--ccccccCCEEECCCC-ccceECHHHhcCcccCCEEECCCCc-CceeCHhHcCCCcccCEEEccCCC
Confidence 9886544332 678999999999996 45544 6678899999999999997 455544 57889999999999986
No 10
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.95 E-value=8.5e-28 Score=250.24 Aligned_cols=310 Identities=16% Similarity=0.130 Sum_probs=209.7
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFL 235 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~ 235 (512)
.+..++++.++.+.....++.. .+++|++|.+++|.+. .+ +..|..+++|++|++++|.++.+|.. .+++
T Consensus 19 ~~~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 91 (520)
T 2z7x_B 19 LSQKTTILNISQNYISELWTSDILSLSKLRILIISHNRIQ-----YLDISVFKFNQELEYLDLSHNKLVKISCH--PTVN 91 (520)
T ss_dssp CCTTCSEEECCSSCCCCCCHHHHTTCTTCCEEECCSSCCC-----EEEGGGGTTCTTCCEEECCSSCCCEEECC--CCCC
T ss_pred ccccccEEECCCCcccccChhhccccccccEEecCCCccC-----CcChHHhhcccCCCEEecCCCceeecCcc--ccCC
Confidence 3478899999977776655444 8899999999999876 34 44448999999999999999888876 7899
Q ss_pred cCeeeecCCCCcc--cChhhhcCcCCcEEecCCccccccchhhhccccC--ceeecCCccc--CCCCCCCCCCCC-----
Q 010381 236 LKYLKLNIPSLKC--LPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKL--MHLNFGSITL--PAPPTNYSSSLK----- 304 (512)
Q Consensus 236 L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~l~----- 304 (512)
|++|++++|.++. +|..++++++|++|++++|.+.. ..+..+++| ++|++++|.+ .+..|..++.++
T Consensus 92 L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~--~~~~~l~~L~L~~L~l~~n~l~~~~~~~~~l~~l~~~~l~ 169 (520)
T 2z7x_B 92 LKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK--SSVLPIAHLNISKVLLVLGETYGEKEDPEGLQDFNTESLH 169 (520)
T ss_dssp CSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG--GGGGGGTTSCEEEEEEEECTTTTSSCCTTTTTTCCEEEEE
T ss_pred ccEEeccCCccccccchhhhccCCcceEEEecCcccch--hhccccccceeeEEEeecccccccccccccccccccceEE
Confidence 9999999999884 67889999999999999887754 345566666 7777776666 444444444422
Q ss_pred ------------------------------------------------------------------------------CC
Q 010381 305 ------------------------------------------------------------------------------NL 306 (512)
Q Consensus 305 ------------------------------------------------------------------------------~L 306 (512)
+|
T Consensus 170 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~l~~~~~~~~~~~~~~~~L 249 (520)
T 2z7x_B 170 IVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIETTWNSFIRILQLVWHTTV 249 (520)
T ss_dssp EECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEEEEHHHHHHHHHHHHTSSC
T ss_pred EEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccccCHHHHHHHHHHhhhCcc
Confidence 23
Q ss_pred CeeecCC-CC-ccCchhc-----------------------------------------------------CCCCCCCeE
Q 010381 307 IFVSALH-PI-SCTPDIL-----------------------------------------------------GRLPNIQTL 331 (512)
Q Consensus 307 ~~l~l~~-~~-~~~~~~l-----------------------------------------------------~~l~~L~~L 331 (512)
+.+++++ .+ +..|..+ ..+++|++|
T Consensus 250 ~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~l~~L~~L 329 (520)
T 2z7x_B 250 WYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSGTRMVHMLCPSKISPFLHL 329 (520)
T ss_dssp SEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEE
T ss_pred cEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCCCccccccchhhCCcccEE
Confidence 3333321 00 1222222 334444444
Q ss_pred EEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc--CcCCCCCCccEEEEecccCCCCCC-CCCCCCcccceeEE
Q 010381 332 RISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL--SEYQFPPSLTHLSLSNTELKEDPM-PTLEKLPYVQVLKL 408 (512)
Q Consensus 332 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l--~~~~lp~~L~~L~L~~~~~~~~~~-~~l~~l~~L~~L~l 408 (512)
++++| ......|..+..+++|+.|++++|.+..+..+ .+..+ ++|++|++++|.+.+..+ ..+..+++|++|++
T Consensus 330 ~Ls~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~~~~l-~~L~~L~Ls~N~l~~~l~~~~~~~l~~L~~L~L 406 (520)
T 2z7x_B 330 DFSNN--LLTDTVFENCGHLTELETLILQMNQLKELSKIAEMTTQM-KSLQQLDISQNSVSYDEKKGDCSWTKSLLSLNM 406 (520)
T ss_dssp ECCSS--CCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHHHTTC-TTCCEEECCSSCCBCCGGGCSCCCCTTCCEEEC
T ss_pred EeECC--ccChhhhhhhccCCCCCEEEccCCccCccccchHHHhhC-CCCCEEECCCCcCCcccccchhccCccCCEEEC
Confidence 44444 23333444445555555555555444321110 24556 777777777777665333 34667777777777
Q ss_pred EcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcc-cCCCCCCcEEEccCCh
Q 010381 409 KQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEE-LWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 486 (512)
++|.+.+..+.. + .++|+.|++++| .++.+|..+..+++|+.|++++|. ++.+|.. +..+++|++|++++|+
T Consensus 407 s~N~l~~~~~~~--l--~~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 479 (520)
T 2z7x_B 407 SSNILTDTIFRC--L--PPRIKVLDLHSN-KIKSIPKQVVKLEALQELNVASNQ-LKSVPDGIFDRLTSLQKIWLHTNP 479 (520)
T ss_dssp CSSCCCGGGGGS--C--CTTCCEEECCSS-CCCCCCGGGGGCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cCCCCCcchhhh--h--cccCCEEECCCC-cccccchhhhcCCCCCEEECCCCc-CCccCHHHhccCCcccEEECcCCC
Confidence 777766544322 1 168999999985 677888877899999999999997 5678876 8899999999999976
No 11
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=5e-27 Score=249.08 Aligned_cols=269 Identities=18% Similarity=0.134 Sum_probs=186.0
Q ss_pred eeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCcccccc-chhhhccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~ 289 (512)
.|+.|++++|.++.++ ..++.+++|++|++++|.++.+|..++.+++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 255 ~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~ 334 (606)
T 3t6q_A 255 SVESINLQKHYFFNISSNTFHCFSGLQELDLTATHLSELPSGLVGLSTLKKLVLSANKFENLCQISASNFPSLTHLSIKG 334 (606)
T ss_dssp EEEEEECTTCCCSSCCTTTTTTCTTCSEEECTTSCCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGCTTCSEEECCS
T ss_pred ceeEEEeecCccCccCHHHhccccCCCEEeccCCccCCCChhhcccccCCEEECccCCcCcCchhhhhccCcCCEEECCC
Confidence 5666666666666444 347788889999999998888888888889999999999887766 45688889999999998
Q ss_pred cccCCCCCCC-CCCCCCCCeeecCC-CCccC---chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 290 ITLPAPPTNY-SSSLKNLIFVSALH-PISCT---PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 290 ~~~~~~~p~~-~~~l~~L~~l~l~~-~~~~~---~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
|.+.+.+|.. ++++++|+.+++++ .+... +..++.+++|++|++++| ......+..+..+++|+.|++++|.+
T Consensus 335 n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~l~~L~~L~l~~n~l 412 (606)
T 3t6q_A 335 NTKRLELGTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYN--EPLSLKTEAFKECPQLELLDLAFTRL 412 (606)
T ss_dssp CSSCCBCCSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSC--SCEEECTTTTTTCTTCSEEECTTCCE
T ss_pred CCcccccchhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCC--cCCcCCHHHhcCCccCCeEECCCCcC
Confidence 8887666654 88889999998885 22222 456788889999999888 34455566778888888888888754
Q ss_pred CCCccc-CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee-eCCCCCccccEEEecCCCCcce
Q 010381 365 PSRMVL-SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC-VGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 365 p~L~~l-~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
.....- .+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. ..+..+++|++|++++|.....
T Consensus 413 ~~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~l~~L~~L~Ls~n~l~~~ 491 (606)
T 3t6q_A 413 KVKDAQSPFQNL-HLLKVLNLSHSLLDISSEQLFDGLPALQHLNLQGNHFPKGNIQKTNSLQTLGRLEILVLSFCDLSSI 491 (606)
T ss_dssp ECCTTCCTTTTC-TTCCEEECTTCCCBTTCTTTTTTCTTCCEEECTTCBCGGGEECSSCGGGGCTTCCEEECTTSCCCEE
T ss_pred CCcccchhhhCc-ccCCEEECCCCccCCcCHHHHhCCCCCCEEECCCCCCCccccccchhhccCCCccEEECCCCccCcc
Confidence 211000 35667 78888888888777777777777888888888877776533211 1145667777777777533223
Q ss_pred eeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccC
Q 010381 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHW 484 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~ 484 (512)
.|..++.+++|+.|++++|......|..+..+++| .|++++
T Consensus 492 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~L-~L~L~~ 532 (606)
T 3t6q_A 492 DQHAFTSLKMMNHVDLSHNRLTSSSIEALSHLKGI-YLNLAS 532 (606)
T ss_dssp CTTTTTTCTTCCEEECCSSCCCGGGGGGGTTCCSC-EEECCS
T ss_pred ChhhhccccCCCEEECCCCccCcCChhHhCccccc-EEECcC
Confidence 34556667777777777766544444444444444 343333
No 12
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.95 E-value=2.1e-27 Score=249.49 Aligned_cols=309 Identities=16% Similarity=0.130 Sum_probs=211.8
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFL 235 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~ 235 (512)
.+..++++.+..+.....++.. .+++|++|.+++|.+. .+ +..|..+++|++|++++|.++.+|.. .+++
T Consensus 50 ~~~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~-----~~~~~~~~~l~~L~~L~Ls~N~l~~lp~~--~l~~ 122 (562)
T 3a79_B 50 LPPRTKALSLSQNSISELRMPDISFLSELRVLRLSHNRIR-----SLDFHVFLFNQDLEYLDVSHNRLQNISCC--PMAS 122 (562)
T ss_dssp SCTTCCEEECCSSCCCCCCGGGTTTCTTCCEEECCSCCCC-----EECTTTTTTCTTCCEEECTTSCCCEECSC--CCTT
T ss_pred CCCCcCEEECCCCCccccChhhhccCCCccEEECCCCCCC-----cCCHHHhCCCCCCCEEECCCCcCCccCcc--cccc
Confidence 3467788888866666655444 7888888888888765 33 34347788888888888888877766 7788
Q ss_pred cCeeeecCCCCccc--ChhhhcCcCCcEEecCCccccccchhhhccccC--ceeecCCccc--CCCCCCCCCCCC-----
Q 010381 236 LKYLKLNIPSLKCL--PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKL--MHLNFGSITL--PAPPTNYSSSLK----- 304 (512)
Q Consensus 236 L~~L~l~~~~i~~l--p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L--~~L~l~~~~~--~~~~p~~~~~l~----- 304 (512)
|++|++++|.++.+ |..++++++|++|++++|.+... .+..+++| ++|++++|.+ .+..|..+..+.
T Consensus 123 L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~--~~~~l~~L~L~~L~L~~n~l~~~~~~~~~l~~l~~~~l~ 200 (562)
T 3a79_B 123 LRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL--DLLPVAHLHLSCILLDLVSYHIKGGETESLQIPNTTVLH 200 (562)
T ss_dssp CSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT--TTGGGTTSCEEEEEEEESSCCCCSSSCCEEEECCEEEEE
T ss_pred CCEEECCCCCccccCchHhhcccCcccEEecCCCccccC--chhhhhhceeeEEEeecccccccccCcccccccCcceEE
Confidence 88888888888754 46788888888888888766542 23344444 6666665555 333333332221
Q ss_pred ----------------------------------------------------------------------------CCCe
Q 010381 305 ----------------------------------------------------------------------------NLIF 308 (512)
Q Consensus 305 ----------------------------------------------------------------------------~L~~ 308 (512)
+|+.
T Consensus 201 l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~l~~~~~~l~~l~~L~~L~L~~~~l~~~~~~~~~~~~~~~~L~~ 280 (562)
T 3a79_B 201 LVFHPNSLFSVQVNMSVNALGHLQLSNIKLNDENCQRLMTFLSELTRGPTLLNVTLQHIETTWKCSVKLFQFFWPRPVEY 280 (562)
T ss_dssp EEECSSSCCCCCCEEEESSEEEEEEEEEECCSTTHHHHHHHHHHHHSCSSCEEEEEEEEEECHHHHHHHHHHHTTSSEEE
T ss_pred EEecCccchhhhhhhcccccceEEEecccccccccchHHHHHHHHhccCcceEEEecCCcCcHHHHHHHHHhhhcccccE
Confidence 2222
Q ss_pred eecCC-CC-ccCchhc-----------------------------------------------------CCCCCCCeEEE
Q 010381 309 VSALH-PI-SCTPDIL-----------------------------------------------------GRLPNIQTLRI 333 (512)
Q Consensus 309 l~l~~-~~-~~~~~~l-----------------------------------------------------~~l~~L~~L~l 333 (512)
|++++ .+ +..|..+ +.+++|+.|++
T Consensus 281 L~l~~n~l~~~ip~~~~~~~~~~L~~L~~~~~~~~~~~~p~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~l~~L~~L~l 360 (562)
T 3a79_B 281 LNIYNLTITERIDREEFTYSETALKSLMIEHVKNQVFLFSKEALYSVFAEMNIKMLSISDTPFIHMVCPPSPSSFTFLNF 360 (562)
T ss_dssp EEEEEEEECSCCCCCCCCCCSCSCCEEEEEEEEECCCSSCHHHHHHHHHTCCCSEEEEESSCCCCCCCCSSCCCCCEEEC
T ss_pred EEEeccEeeccccchhhhcccccchheehhhcccceeecChhhhhhhhccCcceEEEccCCCcccccCccCCCCceEEEC
Confidence 22221 00 1111111 45667777777
Q ss_pred eccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc--CcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEc
Q 010381 334 SGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL--SEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQ 410 (512)
Q Consensus 334 ~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l--~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~ 410 (512)
+++ ......|..+..+++|+.|++++|.+..+..+ .+..+ ++|+.|++++|.+.+ .+...+..+++|++|++++
T Consensus 361 ~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~l-~~L~~L~l~~N~l~~~~~~~~~~~l~~L~~L~l~~ 437 (562)
T 3a79_B 361 TQN--VFTDSVFQGCSTLKRLQTLILQRNGLKNFFKVALMTKNM-SSLETLDVSLNSLNSHAYDRTCAWAESILVLNLSS 437 (562)
T ss_dssp CSS--CCCTTTTTTCCSCSSCCEEECCSSCCCBTTHHHHTTTTC-TTCCEEECTTSCCBSCCSSCCCCCCTTCCEEECCS
T ss_pred CCC--ccccchhhhhcccCCCCEEECCCCCcCCcccchhhhcCC-CCCCEEECCCCcCCCccChhhhcCcccCCEEECCC
Confidence 776 34445566677777777777777765433221 35677 888888888888876 3334577888899999998
Q ss_pred ccccCceeeeeCCCCC-ccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcc-cCCCCCCcEEEccCCh
Q 010381 411 NSYLGRKLACVGSGGF-PELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEE-LWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 411 ~~~~~~~~~~~~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 486 (512)
|.+.+..+. .+ ++|++|++++| .++.+|.....+++|+.|++++|. ++.+|.. +..+++|+.|++++|+
T Consensus 438 n~l~~~~~~-----~l~~~L~~L~L~~N-~l~~ip~~~~~l~~L~~L~L~~N~-l~~l~~~~~~~l~~L~~L~l~~N~ 508 (562)
T 3a79_B 438 NMLTGSVFR-----CLPPKVKVLDLHNN-RIMSIPKDVTHLQALQELNVASNQ-LKSVPDGVFDRLTSLQYIWLHDNP 508 (562)
T ss_dssp SCCCGGGGS-----SCCTTCSEEECCSS-CCCCCCTTTTSSCCCSEEECCSSC-CCCCCTTSTTTCTTCCCEECCSCC
T ss_pred CCCCcchhh-----hhcCcCCEEECCCC-cCcccChhhcCCCCCCEEECCCCC-CCCCCHHHHhcCCCCCEEEecCCC
Confidence 888765433 33 69999999995 778899888899999999999997 5678887 8999999999999986
No 13
>4eco_A Uncharacterized protein; leucine-rich repeats, protein binding, structural genomics, center for structural genomics, JCSG; 2.70A {Bacteroides eggerthii dsm 20697}
Probab=99.95 E-value=1.1e-27 Score=254.78 Aligned_cols=295 Identities=15% Similarity=0.125 Sum_probs=233.2
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCc-CC--ccCccccCc------cccCeeeecCCCCcccCh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAV-LD--QFPPGLENL------FLLKYLKLNIPSLKCLPS 251 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~-l~--~lp~~l~~l------~~L~~L~l~~~~i~~lp~ 251 (512)
.+++|++|.+.+|...+ .++..+.++++|++|++++|. ++ .+|..++.+ ++|++|++++|.++.+|.
T Consensus 247 ~l~~L~~L~L~~n~l~~----~~p~~l~~l~~L~~L~Ls~n~~l~~~~lp~~~~~L~~~~~l~~L~~L~L~~n~l~~ip~ 322 (636)
T 4eco_A 247 NLKDLTDVEVYNCPNLT----KLPTFLKALPEMQLINVACNRGISGEQLKDDWQALADAPVGEKIQIIYIGYNNLKTFPV 322 (636)
T ss_dssp GCTTCCEEEEECCTTCS----SCCTTTTTCSSCCEEECTTCTTSCHHHHHHHHHHHHHSGGGGTCCEEECCSSCCSSCCC
T ss_pred ccCCCCEEEecCCcCCc----cChHHHhcCCCCCEEECcCCCCCccccchHHHHhhhccccCCCCCEEECCCCcCCccCc
Confidence 47889999999987653 454434889999999999998 87 488888776 899999999999999998
Q ss_pred --hhhcCcCCcEEecCCcccc-ccchhhhccccCceeecCCcccCCCCCCCCCCCCC-CCeeecCC-CCccCchhcCCCC
Q 010381 252 --QLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKN-LIFVSALH-PISCTPDILGRLP 326 (512)
Q Consensus 252 --~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~-L~~l~l~~-~~~~~~~~l~~l~ 326 (512)
.++++++|++|++++|.+. .+| .++.+++|++|++++|.+. .+|..++++++ |+.|++++ .+..+|..++.+.
T Consensus 323 ~~~l~~l~~L~~L~L~~N~l~g~ip-~~~~l~~L~~L~L~~N~l~-~lp~~l~~l~~~L~~L~Ls~N~l~~lp~~~~~~~ 400 (636)
T 4eco_A 323 ETSLQKMKKLGMLECLYNQLEGKLP-AFGSEIKLASLNLAYNQIT-EIPANFCGFTEQVENLSFAHNKLKYIPNIFDAKS 400 (636)
T ss_dssp HHHHTTCTTCCEEECCSCCCEEECC-CCEEEEEESEEECCSSEEE-ECCTTSEEECTTCCEEECCSSCCSSCCSCCCTTC
T ss_pred hhhhccCCCCCEEeCcCCcCccchh-hhCCCCCCCEEECCCCccc-cccHhhhhhcccCcEEEccCCcCcccchhhhhcc
Confidence 8999999999999999887 888 8889999999999999887 88888999999 99999986 4456666666654
Q ss_pred --CCCeEEEeccchhhhhhHHHhcc-------CCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 327 --NIQTLRISGDLSYYQSRVSKSLC-------KLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 327 --~L~~L~l~~~~~~~~~~l~~~l~-------~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
+|+.|++++| ......|..+. .+++|+.|++++|.+..+..-.+..+ ++|++|++++|.++..+...+
T Consensus 401 l~~L~~L~Ls~N--~l~~~~p~~l~~~~~~~~~~~~L~~L~Ls~N~l~~lp~~~~~~l-~~L~~L~Ls~N~l~~i~~~~~ 477 (636)
T 4eco_A 401 VSVMSAIDFSYN--EIGSVDGKNFDPLDPTPFKGINVSSINLSNNQISKFPKELFSTG-SPLSSINLMGNMLTEIPKNSL 477 (636)
T ss_dssp SSCEEEEECCSS--CTTTTTTCSSCTTCSSCCCCCCEEEEECCSSCCCSCCTHHHHTT-CCCSEEECCSSCCSBCCSSSS
T ss_pred cCccCEEECcCC--cCCCcchhhhcccccccccCCCCCEEECcCCccCcCCHHHHccC-CCCCEEECCCCCCCCcCHHHh
Confidence 8999999998 46666676676 77799999999987654321123457 899999999998874333333
Q ss_pred CCC-------cccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeec------CCccc
Q 010381 398 EKL-------PYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD------PCAYL 464 (512)
Q Consensus 398 ~~l-------~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~------~c~~l 464 (512)
... ++|+.|++++|.+.. .+.......+++|+.|+|++| .++.+|..+..+++|+.|+++ +|...
T Consensus 478 ~~~~~~~~~l~~L~~L~Ls~N~l~~-lp~~~~~~~l~~L~~L~Ls~N-~l~~ip~~~~~l~~L~~L~Ls~N~~ls~N~l~ 555 (636)
T 4eco_A 478 KDENENFKNTYLLTSIDLRFNKLTK-LSDDFRATTLPYLVGIDLSYN-SFSKFPTQPLNSSTLKGFGIRNQRDAQGNRTL 555 (636)
T ss_dssp EETTEECTTGGGCCEEECCSSCCCB-CCGGGSTTTCTTCCEEECCSS-CCSSCCCGGGGCSSCCEEECCSCBCTTCCBCC
T ss_pred ccccccccccCCccEEECcCCcCCc-cChhhhhccCCCcCEEECCCC-CCCCcChhhhcCCCCCEEECCCCcccccCccc
Confidence 332 389999999998873 333220138899999999995 566688888899999999995 45667
Q ss_pred CCCCcccCCCCCCcEEEccCCh
Q 010381 465 RKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 465 ~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..+|..+..+++|++|++++|.
T Consensus 556 ~~~p~~l~~l~~L~~L~Ls~N~ 577 (636)
T 4eco_A 556 REWPEGITLCPSLTQLQIGSND 577 (636)
T ss_dssp CCCCTTGGGCSSCCEEECCSSC
T ss_pred ccChHHHhcCCCCCEEECCCCc
Confidence 7888889999999999999987
No 14
>3o6n_A APL1; leucine-rich repeat, protein binding; HET: NAG; 1.85A {Anopheles gambiae}
Probab=99.95 E-value=3.7e-27 Score=236.24 Aligned_cols=283 Identities=15% Similarity=0.114 Sum_probs=238.1
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~ 257 (512)
.+++++.|.+.++... .+ ..++..+++|++|++++|.++.++ ..++.+++|++|++++|.++.+| ..+++++
T Consensus 43 ~l~~l~~l~l~~~~l~-----~l~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 117 (390)
T 3o6n_A 43 TLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 117 (390)
T ss_dssp GGCCCSEEEEESCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred ccCCceEEEecCCchh-----hCChhHhcccccCcEEECCCCcccccChhhccCCCCcCEEECCCCCCCcCCHHHhcCCC
Confidence 6799999999998775 45 555589999999999999999665 58999999999999999999665 4589999
Q ss_pred CCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEecc
Q 010381 258 NLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
+|++|++++|.+..+|.. +.++++|++|++++|.+.+..|..++++++|+.|+++++ .-....++.+++|+.|+++++
T Consensus 118 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n-~l~~~~~~~l~~L~~L~l~~n 196 (390)
T 3o6n_A 118 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSN-RLTHVDLSLIPSLFHANVSYN 196 (390)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTSSCTTCCEEECCSS-CCSBCCGGGCTTCSEEECCSS
T ss_pred CCCEEECCCCccCcCCHHHhcCCCCCcEEECCCCccCccChhhccCCCCCCEEECCCC-cCCccccccccccceeecccc
Confidence 999999999999999977 489999999999999998777788999999999999863 111224678899999999988
Q ss_pred chhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 337 LSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 337 ~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
. .. .+...++|+.|++++|.+..+. .... ++|+.|++++|.+++ ++.++.+++|++|++++|.+.+.
T Consensus 197 ~--l~-----~~~~~~~L~~L~l~~n~l~~~~---~~~~-~~L~~L~l~~n~l~~--~~~l~~l~~L~~L~Ls~n~l~~~ 263 (390)
T 3o6n_A 197 L--LS-----TLAIPIAVEELDASHNSINVVR---GPVN-VELTILKLQHNNLTD--TAWLLNYPGLVEVDLSYNELEKI 263 (390)
T ss_dssp C--CS-----EEECCSSCSEEECCSSCCCEEE---CCCC-SSCCEEECCSSCCCC--CGGGGGCTTCSEEECCSSCCCEE
T ss_pred c--cc-----ccCCCCcceEEECCCCeeeecc---cccc-ccccEEECCCCCCcc--cHHHcCCCCccEEECCCCcCCCc
Confidence 3 21 2345678999999998775421 1234 899999999999875 35788999999999999998765
Q ss_pred eeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 417 KLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 417 ~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+.. +..+++|+.|++++ +.++.++.....+++|+.|++++|. ++.+|..+..+++|++|++++|+
T Consensus 264 ~~~~--~~~l~~L~~L~L~~-n~l~~~~~~~~~l~~L~~L~L~~n~-l~~~~~~~~~l~~L~~L~L~~N~ 329 (390)
T 3o6n_A 264 MYHP--FVKMQRLERLYISN-NRLVALNLYGQPIPTLKVLDLSHNH-LLHVERNQPQFDRLENLYLDHNS 329 (390)
T ss_dssp ESGG--GTTCSSCCEEECCS-SCCCEEECSSSCCTTCCEEECCSSC-CCCCGGGHHHHTTCSEEECCSSC
T ss_pred ChhH--ccccccCCEEECCC-CcCcccCcccCCCCCCCEEECCCCc-ceecCccccccCcCCEEECCCCc
Confidence 4443 68899999999999 5688888888899999999999996 66888888899999999999997
No 15
>3t6q_A CD180 antigen; protein-protein complex, leucine rich repeat, MD-2 related L recognition, receptor, innate immunity, glycosylation, IMMU; HET: NAG BMA MAN; 1.90A {Mus musculus} PDB: 3b2d_A* 3rg1_A*
Probab=99.95 E-value=8.3e-28 Score=255.10 Aligned_cols=319 Identities=18% Similarity=0.107 Sum_probs=212.7
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~ 234 (512)
.+..++++.+..+.....++.. .+++|++|++++|.+. .+ +..|.++++|++|++++|.++ ..|..++.++
T Consensus 31 l~~~l~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 105 (606)
T 3t6q_A 31 LPNSTECLEFSFNVLPTIQNTTFSRLINLTFLDLTRCQIY-----WIHEDTFQSQHRLDTLVLTANPLIFMAETALSGPK 105 (606)
T ss_dssp SCTTCCEEECTTCCCSEECTTTSTTCTTCSEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCSEECTTTTSSCT
T ss_pred CCCcCcEEEccCCccCcCChhHhccCccceEEECCCCccc-----eeChhhccCccccCeeeCCCCcccccChhhhcccc
Confidence 4567888888877776665544 8888888888888765 33 443488888888888888877 4466788888
Q ss_pred ccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCC--eee
Q 010381 235 LLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLI--FVS 310 (512)
Q Consensus 235 ~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~--~l~ 310 (512)
+|++|++++|.++.+ |..++++++|++|++++|.+..++ +.+..+++|++|++++|.+.+..|..++.+++|+ .++
T Consensus 106 ~L~~L~L~~n~i~~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~l~L~ 185 (606)
T 3t6q_A 106 ALKHLFFIQTGISSIDFIPLHNQKTLESLYLGSNHISSIKLPKGFPTEKLKVLDFQNNAIHYLSKEDMSSLQQATNLSLN 185 (606)
T ss_dssp TCCEEECTTSCCSCGGGSCCTTCTTCCEEECCSSCCCCCCCCTTCCCTTCCEEECCSSCCCEECHHHHHTTTTCCSEEEE
T ss_pred cccEeeccccCcccCCcchhccCCcccEEECCCCcccccCcccccCCcccCEEEcccCcccccChhhhhhhcccceeEEe
Confidence 888888888888865 556778888888888888776652 2344477788888877777655555566666665 454
Q ss_pred cCC-CCccC-----------------------------------------------------------------------
Q 010381 311 ALH-PISCT----------------------------------------------------------------------- 318 (512)
Q Consensus 311 l~~-~~~~~----------------------------------------------------------------------- 318 (512)
+++ .+...
T Consensus 186 l~~n~l~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~~~l~~l~~~~~~~~~~~~i~~~~~~~l~~~~L~~L~l~~n~ 265 (606)
T 3t6q_A 186 LNGNDIAGIEPGAFDSAVFQSLNFGGTQNLLVIFKGLKNSTIQSLWLGTFEDMDDEDISPAVFEGLCEMSVESINLQKHY 265 (606)
T ss_dssp CTTCCCCEECTTTTTTCEEEEEECTTCSCHHHHHHHTTTCEEEEEECCCCTTSCCCCCCGGGGGGGGGSEEEEEECTTCC
T ss_pred cCCCccCccChhHhhhccccccccCCchhHHHHhhhccccchhheechhhccccccccChhHhchhhcCceeEEEeecCc
Confidence 443 11111
Q ss_pred -----chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCC
Q 010381 319 -----PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDP 393 (512)
Q Consensus 319 -----~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~ 393 (512)
+..++.+++|+.|+++++ ....+|..+..+++|+.|++++|.+..+..-.+..+ ++|++|++++|.+.+..
T Consensus 266 l~~~~~~~~~~l~~L~~L~l~~n---~l~~lp~~l~~l~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~~~~~~ 341 (606)
T 3t6q_A 266 FFNISSNTFHCFSGLQELDLTAT---HLSELPSGLVGLSTLKKLVLSANKFENLCQISASNF-PSLTHLSIKGNTKRLEL 341 (606)
T ss_dssp CSSCCTTTTTTCTTCSEEECTTS---CCSCCCSSCCSCTTCCEEECTTCCCSBGGGGCGGGC-TTCSEEECCSCSSCCBC
T ss_pred cCccCHHHhccccCCCEEeccCC---ccCCCChhhcccccCCEEECccCCcCcCchhhhhcc-CcCCEEECCCCCccccc
Confidence 112455566666666665 233555556666666666666665432211155666 77778888777766443
Q ss_pred C-CCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCc-cc
Q 010381 394 M-PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPE-EL 471 (512)
Q Consensus 394 ~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~-~~ 471 (512)
+ ..++.+++|++|++++|.+.+.......+..+++|++|++++|......+..+..+++|+.|++++|......|. .+
T Consensus 342 ~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~ 421 (606)
T 3t6q_A 342 GTGCLENLENLRELDLSHDDIETSDCCNLQLRNLSHLQSLNLSYNEPLSLKTEAFKECPQLELLDLAFTRLKVKDAQSPF 421 (606)
T ss_dssp CSSTTTTCTTCCEEECCSSCCCEEEESTTTTTTCTTCCEEECCSCSCEEECTTTTTTCTTCSEEECTTCCEECCTTCCTT
T ss_pred chhhhhccCcCCEEECCCCccccccCcchhcccCCCCCEEECCCCcCCcCCHHHhcCCccCCeEECCCCcCCCcccchhh
Confidence 3 347778888888888777765432111157788888888888543333455677788888888888876555444 37
Q ss_pred CCCCCCcEEEccCCh
Q 010381 472 WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 472 ~~l~~L~~L~l~~~~ 486 (512)
..+++|++|++++|.
T Consensus 422 ~~l~~L~~L~l~~n~ 436 (606)
T 3t6q_A 422 QNLHLLKVLNLSHSL 436 (606)
T ss_dssp TTCTTCCEEECTTCC
T ss_pred hCcccCCEEECCCCc
Confidence 788888888888885
No 16
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=4.4e-27 Score=254.85 Aligned_cols=314 Identities=18% Similarity=0.171 Sum_probs=250.0
Q ss_pred CCCceeEEEEEecCCcc-ccCCC-CCCCeeEEEEecCC-cch-hhhcchhH---HhcCCCeeEEEEecCCcCCccCc--c
Q 010381 159 PMANVKRCFILKDLIDF-FPSEY-SDMYLQSFLNHSSE-SDR-LARIDCEN---FCKKFKYLRVLDLGSAVLDQFPP--G 229 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~-~~~~~-~~~~Lr~L~l~~~~-~~~-~~~~~~~~---~~~~~~~L~~L~l~~~~l~~lp~--~ 229 (512)
....++.|.+..+.... +|... .+++|+.|.+.+|. +.. .....+.. .+..+++|++|++++|.++.+|. .
T Consensus 489 ~L~~L~~L~Ls~N~l~~~iP~~l~~L~~L~~L~Ls~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~ 568 (876)
T 4ecn_A 489 NLKDLTDVELYNCPNMTQLPDFLYDLPELQSLNIACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASAS 568 (876)
T ss_dssp GCTTCCEEEEESCTTCCSCCGGGGGCSSCCEEECTTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHH
T ss_pred cCCCCCEEECcCCCCCccChHHHhCCCCCCEEECcCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhh
Confidence 45779999999776444 44334 89999999999997 542 11111211 12566799999999999999999 8
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhcccc-CceeecCCcccCCCCCCCCCCCCC--C
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQK-LMHLNFGSITLPAPPTNYSSSLKN--L 306 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~-L~~L~l~~~~~~~~~p~~~~~l~~--L 306 (512)
++++++|++|++++|.++.+| .++.+++|+.|++++|.+..+|..+.++++ |++|++++|.+. .+|..+..+.. |
T Consensus 569 l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~Ls~N~l~~lp~~l~~l~~~L~~L~Ls~N~L~-~lp~~~~~~~~~~L 646 (876)
T 4ecn_A 569 LQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLKLDYNQIEEIPEDFCAFTDQVEGLGFSHNKLK-YIPNIFNAKSVYVM 646 (876)
T ss_dssp HTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEECCSSCCSCCCTTSCEECTTCCEEECCSSCCC-SCCSCCCTTCSSCE
T ss_pred hhcCCCCCEEECCCCCcccch-hhcCCCcceEEECcCCccccchHHHhhccccCCEEECcCCCCC-cCchhhhccccCCC
Confidence 999999999999999999999 899999999999999999899999999999 999999999987 88988887765 9
Q ss_pred CeeecCC-CCccCc----hhcC--CCCCCCeEEEeccchhhhhhHHHhc-cCCCCCcEEEeccCCCCCCcccCcC-----
Q 010381 307 IFVSALH-PISCTP----DILG--RLPNIQTLRISGDLSYYQSRVSKSL-CKLQKLEWLKLVNESKPSRMVLSEY----- 373 (512)
Q Consensus 307 ~~l~l~~-~~~~~~----~~l~--~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l~~~~~p~L~~l~~~----- 373 (512)
+.|++++ .+...+ ..++ .+++|+.|++++|. .. .+|..+ ..+++|+.|++++|.+..+.. ++.
T Consensus 647 ~~L~Ls~N~l~g~ip~l~~~l~~~~~~~L~~L~Ls~N~--L~-~lp~~~~~~l~~L~~L~Ls~N~L~~ip~-~~~~~~~~ 722 (876)
T 4ecn_A 647 GSVDFSYNKIGSEGRNISCSMDDYKGINASTVTLSYNE--IQ-KFPTELFATGSPISTIILSNNLMTSIPE-NSLKPKDG 722 (876)
T ss_dssp EEEECCSSCTTTTSSSCSSCTTTCCCCCEEEEECCSSC--CC-SCCHHHHHTTCCCSEEECCSCCCSCCCT-TSSSCTTS
T ss_pred CEEECcCCcCCCccccchhhhccccCCCcCEEEccCCc--CC-ccCHHHHccCCCCCEEECCCCcCCccCh-HHhccccc
Confidence 9999986 222222 2223 44589999999983 33 566554 488999999999987643221 222
Q ss_pred ---CCCCCccEEEEecccCCCCCCCCCC--CCcccceeEEEcccccCceeeeeCCCCCccccEEEecC------CCCcce
Q 010381 374 ---QFPPSLTHLSLSNTELKEDPMPTLE--KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKS------MYWLDE 442 (512)
Q Consensus 374 ---~lp~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~------~~~l~~ 442 (512)
.+ ++|+.|+|++|.++ ..|..+. .+++|+.|+|++|.+.+ .+.. +..+++|+.|+|++ |.....
T Consensus 723 ~l~nl-~~L~~L~Ls~N~L~-~lp~~l~~~~l~~L~~L~Ls~N~L~~-lp~~--l~~L~~L~~L~Ls~N~~ls~N~l~~~ 797 (876)
T 4ecn_A 723 NYKNT-YLLTTIDLRFNKLT-SLSDDFRATTLPYLSNMDVSYNCFSS-FPTQ--PLNSSQLKAFGIRHQRDAEGNRILRQ 797 (876)
T ss_dssp CCTTG-GGCCEEECCSSCCC-CCCGGGSTTTCTTCCEEECCSSCCSS-CCCG--GGGCTTCCEEECCCCBCTTCCBCCCC
T ss_pred ccccc-CCccEEECCCCCCc-cchHHhhhccCCCcCEEEeCCCCCCc-cchh--hhcCCCCCEEECCCCCCccccccccc
Confidence 22 39999999999997 5666776 89999999999999987 3333 67899999999976 444557
Q ss_pred eeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 443 WTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|..+..+++|+.|++++|.. +.+|..+. ++|+.|+|++|+
T Consensus 798 ip~~l~~L~~L~~L~Ls~N~L-~~Ip~~l~--~~L~~LdLs~N~ 838 (876)
T 4ecn_A 798 WPTGITTCPSLIQLQIGSNDI-RKVDEKLT--PQLYILDIADNP 838 (876)
T ss_dssp CCTTGGGCSSCCEEECCSSCC-CBCCSCCC--SSSCEEECCSCT
T ss_pred ChHHHhcCCCCCEEECCCCCC-CccCHhhc--CCCCEEECCCCC
Confidence 888899999999999999986 88998765 799999999997
No 17
>4ecn_A Leucine-rich repeat protein; leucine-rich repeats, DUF4458 domain, protein binding, extra protein, structural genomics; 2.80A {Bacteroides thetaiotaomicron}
Probab=99.95 E-value=1.4e-27 Score=258.78 Aligned_cols=314 Identities=12% Similarity=0.101 Sum_probs=248.3
Q ss_pred CCceeEEEEEecCCcc------------------ccCCC---CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEe
Q 010381 160 MANVKRCFILKDLIDF------------------FPSEY---SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDL 218 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~------------------~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l 218 (512)
...++.|.+..+.... +|... .+++|+.|.+.+|.... .++..+.++++|++|++
T Consensus 447 L~~L~~L~Ls~N~Lsg~~i~~~~~~~s~n~~~g~iP~~l~f~~L~~L~~L~Ls~N~l~~----~iP~~l~~L~~L~~L~L 522 (876)
T 4ecn_A 447 LTKLQIIYFANSPFTYDNIAVDWEDANSDYAKQYENEELSWSNLKDLTDVELYNCPNMT----QLPDFLYDLPELQSLNI 522 (876)
T ss_dssp CTTCCEEEEESCCCCGGGBSSSCSCTTSHHHHHHTTSCCCGGGCTTCCEEEEESCTTCC----SCCGGGGGCSSCCEEEC
T ss_pred CCCCCEEECcCCcCCCCcccccccccccccccccCChhhhhccCCCCCEEECcCCCCCc----cChHHHhCCCCCCEEEC
Confidence 4678999999777665 45443 58999999999987653 45444489999999999
Q ss_pred cCCc-CC--ccCccccCcc-------ccCeeeecCCCCcccCh--hhhcCcCCcEEecCCccccccchhhhccccCceee
Q 010381 219 GSAV-LD--QFPPGLENLF-------LLKYLKLNIPSLKCLPS--QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLN 286 (512)
Q Consensus 219 ~~~~-l~--~lp~~l~~l~-------~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 286 (512)
++|. ++ .+|..++.+. +|++|++++|.++.+|. .++++++|++|++++|.+..+| .++++++|++|+
T Consensus 523 s~N~~lsg~~iP~~i~~L~~~~~~l~~L~~L~Ls~N~L~~ip~~~~l~~L~~L~~L~Ls~N~l~~lp-~~~~L~~L~~L~ 601 (876)
T 4ecn_A 523 ACNRGISAAQLKADWTRLADDEDTGPKIQIFYMGYNNLEEFPASASLQKMVKLGLLDCVHNKVRHLE-AFGTNVKLTDLK 601 (876)
T ss_dssp TTCTTSCHHHHHHHHHHHHHCTTTTTTCCEEECCSSCCCBCCCHHHHTTCTTCCEEECTTSCCCBCC-CCCTTSEESEEE
T ss_pred cCCCCcccccchHHHHhhhhcccccCCccEEEeeCCcCCccCChhhhhcCCCCCEEECCCCCcccch-hhcCCCcceEEE
Confidence 9998 77 4887776665 99999999999999998 8999999999999999888888 789999999999
Q ss_pred cCCcccCCCCCCCCCCCCC-CCeeecCC-CCccCchhcCCCCC--CCeEEEeccchhhhhhHH---Hhcc--CCCCCcEE
Q 010381 287 FGSITLPAPPTNYSSSLKN-LIFVSALH-PISCTPDILGRLPN--IQTLRISGDLSYYQSRVS---KSLC--KLQKLEWL 357 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~-L~~l~l~~-~~~~~~~~l~~l~~--L~~L~l~~~~~~~~~~l~---~~l~--~l~~L~~L 357 (512)
+++|.+. .+|..+.++++ |+.|++++ .+..+|..+..+.. |+.|++++|. ....+| ..+. .+++|+.|
T Consensus 602 Ls~N~l~-~lp~~l~~l~~~L~~L~Ls~N~L~~lp~~~~~~~~~~L~~L~Ls~N~--l~g~ip~l~~~l~~~~~~~L~~L 678 (876)
T 4ecn_A 602 LDYNQIE-EIPEDFCAFTDQVEGLGFSHNKLKYIPNIFNAKSVYVMGSVDFSYNK--IGSEGRNISCSMDDYKGINASTV 678 (876)
T ss_dssp CCSSCCS-CCCTTSCEECTTCCEEECCSSCCCSCCSCCCTTCSSCEEEEECCSSC--TTTTSSSCSSCTTTCCCCCEEEE
T ss_pred CcCCccc-cchHHHhhccccCCEEECcCCCCCcCchhhhccccCCCCEEECcCCc--CCCccccchhhhccccCCCcCEE
Confidence 9999987 88988999999 99999986 44566766666654 9999999983 333322 2222 34589999
Q ss_pred EeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC-------CCcccceeEEEcccccCceeeeeCCC--CCcc
Q 010381 358 KLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE-------KLPYVQVLKLKQNSYLGRKLACVGSG--GFPE 428 (512)
Q Consensus 358 ~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~-------~l~~L~~L~l~~~~~~~~~~~~~~~~--~~~~ 428 (512)
++++|.+..+..-.+..+ ++|+.|+|++|.+...+...+. ++++|+.|+|++|.+.. .+.. +. .+++
T Consensus 679 ~Ls~N~L~~lp~~~~~~l-~~L~~L~Ls~N~L~~ip~~~~~~~~~~l~nl~~L~~L~Ls~N~L~~-lp~~--l~~~~l~~ 754 (876)
T 4ecn_A 679 TLSYNEIQKFPTELFATG-SPISTIILSNNLMTSIPENSLKPKDGNYKNTYLLTTIDLRFNKLTS-LSDD--FRATTLPY 754 (876)
T ss_dssp ECCSSCCCSCCHHHHHTT-CCCSEEECCSCCCSCCCTTSSSCTTSCCTTGGGCCEEECCSSCCCC-CCGG--GSTTTCTT
T ss_pred EccCCcCCccCHHHHccC-CCCCEEECCCCcCCccChHHhccccccccccCCccEEECCCCCCcc-chHH--hhhccCCC
Confidence 999987654322123467 8999999999998743333333 33499999999999873 3333 34 8999
Q ss_pred ccEEEecCCCCcceeeeCCCCccccceeeecC------CcccCCCCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYWLDEWTMGAGAMPKLESLIVDP------CAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~------c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|+.|+|++| .++.+|..++.+++|+.|++++ |.....+|..+.++++|++|++++|.
T Consensus 755 L~~L~Ls~N-~L~~lp~~l~~L~~L~~L~Ls~N~~ls~N~l~~~ip~~l~~L~~L~~L~Ls~N~ 817 (876)
T 4ecn_A 755 LSNMDVSYN-CFSSFPTQPLNSSQLKAFGIRHQRDAEGNRILRQWPTGITTCPSLIQLQIGSND 817 (876)
T ss_dssp CCEEECCSS-CCSSCCCGGGGCTTCCEEECCCCBCTTCCBCCCCCCTTGGGCSSCCEEECCSSC
T ss_pred cCEEEeCCC-CCCccchhhhcCCCCCEEECCCCCCcccccccccChHHHhcCCCCCEEECCCCC
Confidence 999999995 5667898899999999999977 66677889999999999999999997
No 18
>4fmz_A Internalin; leucine rich repeat, structural genomic center for structural genomics, JCSG, protein structure INI PSI-biology; HET: MSE; 1.91A {Listeria monocytogenes serotype 4B}
Probab=99.95 E-value=3.5e-27 Score=232.54 Aligned_cols=281 Identities=16% Similarity=0.200 Sum_probs=237.1
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.++++++|.+.++... .++.+ ..+++|++|++++|.++.++. +..+++|++|++++|.++.+| .++.+++|+
T Consensus 42 ~l~~L~~L~l~~~~i~-----~~~~~-~~~~~L~~L~l~~n~i~~~~~-~~~l~~L~~L~L~~n~i~~~~-~~~~l~~L~ 113 (347)
T 4fmz_A 42 ELESITKLVVAGEKVA-----SIQGI-EYLTNLEYLNLNGNQITDISP-LSNLVKLTNLYIGTNKITDIS-ALQNLTNLR 113 (347)
T ss_dssp HHTTCSEEECCSSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCCG-GGTTCTTCS
T ss_pred hcccccEEEEeCCccc-----cchhh-hhcCCccEEEccCCccccchh-hhcCCcCCEEEccCCcccCch-HHcCCCcCC
Confidence 6789999999998876 44555 889999999999999998777 999999999999999999886 689999999
Q ss_pred EEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhh
Q 010381 261 TLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYY 340 (512)
Q Consensus 261 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 340 (512)
+|++++|.+..++. +..+++|++|++++|.....++ .+..+++|+.+++.+........+..+++|+.|++++|.
T Consensus 114 ~L~l~~n~i~~~~~-~~~l~~L~~L~l~~n~~~~~~~-~~~~l~~L~~L~l~~~~~~~~~~~~~l~~L~~L~l~~n~--- 188 (347)
T 4fmz_A 114 ELYLNEDNISDISP-LANLTKMYSLNLGANHNLSDLS-PLSNMTGLNYLTVTESKVKDVTPIANLTDLYSLSLNYNQ--- 188 (347)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECTTCTTCCCCG-GGTTCTTCCEEECCSSCCCCCGGGGGCTTCSEEECTTSC---
T ss_pred EEECcCCcccCchh-hccCCceeEEECCCCCCccccc-chhhCCCCcEEEecCCCcCCchhhccCCCCCEEEccCCc---
Confidence 99999999998877 8899999999999997665444 489999999999986212223338899999999999983
Q ss_pred hhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeee
Q 010381 341 QSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLAC 420 (512)
Q Consensus 341 ~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~ 420 (512)
...++. +..+++|+.|++++|.+..+. .+..+ ++|++|++++|.+++..+ +..+++|++|++++|.+.+. ..
T Consensus 189 l~~~~~-~~~l~~L~~L~l~~n~l~~~~--~~~~~-~~L~~L~l~~n~l~~~~~--~~~l~~L~~L~l~~n~l~~~--~~ 260 (347)
T 4fmz_A 189 IEDISP-LASLTSLHYFTAYVNQITDIT--PVANM-TRLNSLKIGNNKITDLSP--LANLSQLTWLEIGTNQISDI--NA 260 (347)
T ss_dssp CCCCGG-GGGCTTCCEEECCSSCCCCCG--GGGGC-TTCCEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCCC--GG
T ss_pred cccccc-ccCCCccceeecccCCCCCCc--hhhcC-CcCCEEEccCCccCCCcc--hhcCCCCCEEECCCCccCCC--hh
Confidence 222332 778999999999999887644 36678 999999999999876443 88999999999999988764 22
Q ss_pred eCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 421 VGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 421 ~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++| .++.++ .+..+++|+.|++++|......|..+..+++|++|++++|+
T Consensus 261 --~~~l~~L~~L~l~~n-~l~~~~-~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~L~~n~ 322 (347)
T 4fmz_A 261 --VKDLTKLKMLNVGSN-QISDIS-VLNNLSQLNSLFLNNNQLGNEDMEVIGGLTNLTTLFLSQNH 322 (347)
T ss_dssp --GTTCTTCCEEECCSS-CCCCCG-GGGGCTTCSEEECCSSCCCGGGHHHHHTCTTCSEEECCSSS
T ss_pred --HhcCCCcCEEEccCC-ccCCCh-hhcCCCCCCEEECcCCcCCCcChhHhhccccCCEEEccCCc
Confidence 688999999999996 566665 47889999999999998766777788999999999999997
No 19
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=7.7e-27 Score=246.71 Aligned_cols=286 Identities=17% Similarity=0.183 Sum_probs=178.9
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~ 257 (512)
.+++++.+.+.++.+. .+ +.++..+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+|. .+++++
T Consensus 49 ~l~~l~~l~l~~~~l~-----~lp~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 123 (597)
T 3oja_B 49 TLNNQKIVTFKNSTMR-----KLPAALLDSFRQVELLNLNDLQIEEIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVP 123 (597)
T ss_dssp GGCCCSEEEESSCEES-----EECTHHHHHCCCCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred cCCCceEEEeeCCCCC-----CcCHHHHccCCCCcEEECCCCCCCCCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCC
Confidence 4455555555555443 23 333355556666666665555333 355555666666666655554433 245556
Q ss_pred CCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-Ccc-----------------C
Q 010381 258 NLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-ISC-----------------T 318 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-~~~-----------------~ 318 (512)
+|++|+|++|.+..+|.. ++++++|++|++++|.+.+..|..++++++|+.|+++++ +.. .
T Consensus 124 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~L~l~~n~ 203 (597)
T 3oja_B 124 LLTVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVDLSLIPSLFHANVSYNL 203 (597)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCCGGGCTTCSEEECCSSC
T ss_pred CCCEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcChhhhhhhhhhhcccCc
Confidence 666666666655555544 355566666666665555544555555666666655531 111 1
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE 398 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~ 398 (512)
...+....+|+.|+++++. ...++.. ..++|+.|++++|.+.... ++..+ ++|+.|+|++|.+.+..|..++
T Consensus 204 l~~l~~~~~L~~L~ls~n~---l~~~~~~--~~~~L~~L~L~~n~l~~~~--~l~~l-~~L~~L~Ls~N~l~~~~~~~~~ 275 (597)
T 3oja_B 204 LSTLAIPIAVEELDASHNS---INVVRGP--VNVELTILKLQHNNLTDTA--WLLNY-PGLVEVDLSYNELEKIMYHPFV 275 (597)
T ss_dssp CSEEECCTTCSEEECCSSC---CCEEECS--CCSCCCEEECCSSCCCCCG--GGGGC-TTCSEEECCSSCCCEEESGGGT
T ss_pred cccccCCchhheeeccCCc---ccccccc--cCCCCCEEECCCCCCCCCh--hhccC-CCCCEEECCCCccCCCCHHHhc
Confidence 1222333444555555442 1111111 1246777777776665433 66778 8999999999998877788888
Q ss_pred CCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCc
Q 010381 399 KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLR 478 (512)
Q Consensus 399 ~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~ 478 (512)
.+++|+.|++++|.+.+. ... ...+++|+.|+|++| .+..+|..++.+++|+.|++++|. +..+| +..+++|+
T Consensus 276 ~l~~L~~L~Ls~N~l~~l--~~~-~~~l~~L~~L~Ls~N-~l~~i~~~~~~l~~L~~L~L~~N~-l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 276 KMQRLERLYISNNRLVAL--NLY-GQPIPTLKVLDLSHN-HLLHVERNQPQFDRLENLYLDHNS-IVTLK--LSTHHTLK 348 (597)
T ss_dssp TCSSCCEEECTTSCCCEE--ECS-SSCCTTCCEEECCSS-CCCCCGGGHHHHTTCSEEECCSSC-CCCCC--CCTTCCCS
T ss_pred CccCCCEEECCCCCCCCC--Ccc-cccCCCCcEEECCCC-CCCccCcccccCCCCCEEECCCCC-CCCcC--hhhcCCCC
Confidence 999999999998888663 222 567899999999985 566788777889999999999988 44554 67889999
Q ss_pred EEEccCCh
Q 010381 479 KLDLHWPQ 486 (512)
Q Consensus 479 ~L~l~~~~ 486 (512)
.|++++|+
T Consensus 349 ~L~l~~N~ 356 (597)
T 3oja_B 349 NLTLSHND 356 (597)
T ss_dssp EEECCSSC
T ss_pred EEEeeCCC
Confidence 99999987
No 20
>3vq2_A TLR4, TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, secreted, immune SY; HET: NAG LP4 LP5 DAO MYR; 2.48A {Mus musculus} PDB: 3vq1_A* 2z64_A*
Probab=99.95 E-value=2.4e-27 Score=251.61 Aligned_cols=178 Identities=14% Similarity=0.089 Sum_probs=102.1
Q ss_pred CCCCCCeeecCC-CCcc---CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC------------
Q 010381 302 SLKNLIFVSALH-PISC---TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP------------ 365 (512)
Q Consensus 302 ~l~~L~~l~l~~-~~~~---~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p------------ 365 (512)
.+++|+.+++++ .+.. .+..+..+++|+.|++++|. ...+|..+..+++|+.|++++|.+.
T Consensus 348 ~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~L~~n~---l~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~ 424 (606)
T 3vq2_A 348 ALPSLSYLDLSRNALSFSGCCSYSDLGTNSLRHLDLSFNG---AIIMSANFMGLEELQHLDFQHSTLKRVTEFSAFLSLE 424 (606)
T ss_dssp CCTTCCEEECCSSCEEEEEECCHHHHCCSCCCEEECCSCS---EEEECCCCTTCTTCCEEECTTSEEESTTTTTTTTTCT
T ss_pred cCCCCCEEECcCCccCCCcchhhhhccCCcccEeECCCCc---cccchhhccCCCCCCeeECCCCccCCccChhhhhccc
Confidence 445566666654 1111 25566677777777777762 2334455566666666666664321
Q ss_pred CCccc-------------CcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccE
Q 010381 366 SRMVL-------------SEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431 (512)
Q Consensus 366 ~L~~l-------------~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 431 (512)
+|+.| .+..+ ++|++|++++|.+.+ ..+..++.+++|++|++++|.+.+..+.. +.++++|++
T Consensus 425 ~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~ 501 (606)
T 3vq2_A 425 KLLYLDISYTNTKIDFDGIFLGL-TSLNTLKMAGNSFKDNTLSNVFANTTNLTFLDLSKCQLEQISWGV--FDTLHRLQL 501 (606)
T ss_dssp TCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCE
T ss_pred cCCEEECcCCCCCccchhhhcCC-CCCCEEECCCCcCCCcchHHhhccCCCCCEEECCCCcCCccChhh--hcccccCCE
Confidence 11111 34445 556666666665544 24455566666666666666554433222 456667777
Q ss_pred EEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCC-CCcEEEccCCh
Q 010381 432 LHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQ-SLRKLDLHWPQ 486 (512)
Q Consensus 432 L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~ 486 (512)
|++++|......|..+..+++|+.|++++|. ++.+|..+..++ +|+.+++++||
T Consensus 502 L~Ls~N~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~p~~~~~l~~~L~~l~l~~N~ 556 (606)
T 3vq2_A 502 LNMSHNNLLFLDSSHYNQLYSLSTLDCSFNR-IETSKGILQHFPKSLAFFNLTNNS 556 (606)
T ss_dssp EECCSSCCSCEEGGGTTTCTTCCEEECTTSC-CCCEESCGGGSCTTCCEEECCSCC
T ss_pred EECCCCcCCCcCHHHccCCCcCCEEECCCCc-CcccCHhHhhhcccCcEEEccCCC
Confidence 7777654333345566667777777777776 456666666665 47777777754
No 21
>3oja_B Anopheles plasmodium-responsive leucine-rich REPE 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.95 E-value=2.1e-27 Score=251.03 Aligned_cols=282 Identities=17% Similarity=0.149 Sum_probs=212.1
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++.+.+..+....++... .+++|++|.+.++.+. .+ +..|..+++|++|++++|.++.+| ..|+.+++|
T Consensus 51 ~~l~~l~l~~~~l~~lp~~~~~~l~~L~~L~L~~n~l~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 125 (597)
T 3oja_B 51 NNQKIVTFKNSTMRKLPAALLDSFRQVELLNLNDLQIE-----EIDTYAFAYAHTIQKLYMGFNAIRYLPPHVFQNVPLL 125 (597)
T ss_dssp CCCSEEEESSCEESEECTHHHHHCCCCSEEECTTSCCC-----EECTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTC
T ss_pred CCceEEEeeCCCCCCcCHHHHccCCCCcEEECCCCCCC-----CCChHHhcCCCCCCEEECCCCcCCCCCHHHHcCCCCC
Confidence 56778888755566655554 7889999999988876 33 333488899999999999988555 457889999
Q ss_pred CeeeecCCCCcccChh-hhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCC---------
Q 010381 237 KYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKN--------- 305 (512)
Q Consensus 237 ~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~--------- 305 (512)
++|++++|.++.+|.. ++++++|++|++++|.+..+++ .++.+++|++|++++|.+.+.. ++.+++
T Consensus 126 ~~L~L~~n~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~---~~~l~~L~~L~l~~n 202 (597)
T 3oja_B 126 TVLVLERNDLSSLPRGIFHNTPKLTTLSMSNNNLERIEDDTFQATTSLQNLQLSSNRLTHVD---LSLIPSLFHANVSYN 202 (597)
T ss_dssp CEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECTTSCCSBCC---GGGCTTCSEEECCSS
T ss_pred CEEEeeCCCCCCCCHHHhccCCCCCEEEeeCCcCCCCChhhhhcCCcCcEEECcCCCCCCcC---hhhhhhhhhhhcccC
Confidence 9999999999988876 4889999999999998877654 5888999999999998876532 333444
Q ss_pred ----------CCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCC
Q 010381 306 ----------LIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ 374 (512)
Q Consensus 306 ----------L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~ 374 (512)
|+.|++++ .+...+. ...++|+.|++++|. ... +..+..+++|+.|++++|.+.....-.+..
T Consensus 203 ~l~~l~~~~~L~~L~ls~n~l~~~~~--~~~~~L~~L~L~~n~--l~~--~~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~ 276 (597)
T 3oja_B 203 LLSTLAIPIAVEELDASHNSINVVRG--PVNVELTILKLQHNN--LTD--TAWLLNYPGLVEVDLSYNELEKIMYHPFVK 276 (597)
T ss_dssp CCSEEECCTTCSEEECCSSCCCEEEC--SCCSCCCEEECCSSC--CCC--CGGGGGCTTCSEEECCSSCCCEEESGGGTT
T ss_pred ccccccCCchhheeeccCCccccccc--ccCCCCCEEECCCCC--CCC--ChhhccCCCCCEEECCCCccCCCCHHHhcC
Confidence 44455543 1112222 224689999999983 332 367889999999999998773211116778
Q ss_pred CCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccc
Q 010381 375 FPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLE 454 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~ 454 (512)
+ ++|+.|+|++|.+++ .+..+..+++|+.|++++|.+... +.. +..+++|+.|+|++| .+..++ +..+++|+
T Consensus 277 l-~~L~~L~Ls~N~l~~-l~~~~~~l~~L~~L~Ls~N~l~~i-~~~--~~~l~~L~~L~L~~N-~l~~~~--~~~~~~L~ 348 (597)
T 3oja_B 277 M-QRLERLYISNNRLVA-LNLYGQPIPTLKVLDLSHNHLLHV-ERN--QPQFDRLENLYLDHN-SIVTLK--LSTHHTLK 348 (597)
T ss_dssp C-SSCCEEECTTSCCCE-EECSSSCCTTCCEEECCSSCCCCC-GGG--HHHHTTCSEEECCSS-CCCCCC--CCTTCCCS
T ss_pred c-cCCCEEECCCCCCCC-CCcccccCCCCcEEECCCCCCCcc-Ccc--cccCCCCCEEECCCC-CCCCcC--hhhcCCCC
Confidence 8 999999999999875 456678899999999999998743 222 467899999999996 466664 67899999
Q ss_pred eeeecCCccc
Q 010381 455 SLIVDPCAYL 464 (512)
Q Consensus 455 ~L~l~~c~~l 464 (512)
.|++++|+..
T Consensus 349 ~L~l~~N~~~ 358 (597)
T 3oja_B 349 NLTLSHNDWD 358 (597)
T ss_dssp EEECCSSCEE
T ss_pred EEEeeCCCCC
Confidence 9999999853
No 22
>3v47_A TOLL-like receptor 5B and variable lymphocyte REC chimeric protein; innate immunity, leucine-rich repeat, innate immune receptor system; HET: NAG; 2.47A {Danio rerio} PDB: 3v44_A*
Probab=99.94 E-value=1.8e-26 Score=236.08 Aligned_cols=296 Identities=15% Similarity=0.082 Sum_probs=235.3
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC-cc-CccccCccccCeeeecCCCCccc-ChhhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD-QF-PPGLENLFLLKYLKLNIPSLKCL-PSQLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~ 257 (512)
-.+++++|+++++.+.. ..+..+.++++|++|++++|.+. .+ +..|..+++|++|++++|.++.+ |..+++++
T Consensus 28 l~~~l~~L~Ls~n~i~~----~~~~~~~~l~~L~~L~L~~n~~~~~i~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 103 (455)
T 3v47_A 28 LPAHVNYVDLSLNSIAE----LNETSFSRLQDLQFLKVEQQTPGLVIRNNTFRGLSSLIILKLDYNQFLQLETGAFNGLA 103 (455)
T ss_dssp CCTTCCEEECCSSCCCE----ECTTTTSSCTTCCEEECCCCSTTCEECTTTTTTCTTCCEEECTTCTTCEECTTTTTTCT
T ss_pred CCCccCEEEecCCccCc----CChhHhccCccccEEECcCCcccceECcccccccccCCEEeCCCCccCccChhhccCcc
Confidence 45889999999998863 22443499999999999999986 55 56799999999999999999954 77899999
Q ss_pred CCcEEecCCccccc-cchh--hhccccCceeecCCcccCCCCCCC-CCCCCCCCeeecCC-CC-ccCchhcCCC--CCCC
Q 010381 258 NLQTLQMPSSYIDQ-SPED--IWMMQKLMHLNFGSITLPAPPTNY-SSSLKNLIFVSALH-PI-SCTPDILGRL--PNIQ 329 (512)
Q Consensus 258 ~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p~~-~~~l~~L~~l~l~~-~~-~~~~~~l~~l--~~L~ 329 (512)
+|++|++++|.+.. .|.. +.++++|++|++++|.+.+..|.. ++++++|+.|++++ .+ ...+..+..+ .+|+
T Consensus 104 ~L~~L~L~~n~l~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~~~L~ 183 (455)
T 3v47_A 104 NLEVLTLTQCNLDGAVLSGNFFKPLTSLEMLVLRDNNIKKIQPASFFLNMRRFHVLDLTFNKVKSICEEDLLNFQGKHFT 183 (455)
T ss_dssp TCCEEECTTSCCBTHHHHSSTTTTCTTCCEEECCSSBCCSCCCCGGGGGCTTCCEEECTTCCBSCCCTTTSGGGTTCEEE
T ss_pred cCCEEeCCCCCCCccccCcccccCcccCCEEECCCCccCccCcccccCCCCcccEEeCCCCcccccChhhhhcccccccc
Confidence 99999999998865 4444 889999999999999998776766 89999999999986 22 2234445444 6788
Q ss_pred eEEEeccchhhhh--------hHHHhccCCCCCcEEEeccCCC--------------CCCcccCcC--------------
Q 010381 330 TLRISGDLSYYQS--------RVSKSLCKLQKLEWLKLVNESK--------------PSRMVLSEY-------------- 373 (512)
Q Consensus 330 ~L~l~~~~~~~~~--------~l~~~l~~l~~L~~L~l~~~~~--------------p~L~~l~~~-------------- 373 (512)
.|+++++. ... .....+..+++|+.|++++|.+ ++++.+.+.
T Consensus 184 ~L~l~~n~--l~~~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~ 261 (455)
T 3v47_A 184 LLRLSSIT--LQDMNEYWLGWEKCGNPFKNTSITTLDLSGNGFKESMAKRFFDAIAGTKIQSLILSNSYNMGSSFGHTNF 261 (455)
T ss_dssp EEECTTCB--CTTCSTTCTTHHHHCCTTTTCEEEEEECTTSCCCHHHHHHHHHHTTTCCEEEEECTTCTTTSCCTTCCSS
T ss_pred ccccccCc--ccccchhhccccccccccccceeeeEecCCCcccccchhhhhccccccceeeEeeccccccccccchhhh
Confidence 99988874 111 1122344668999999999865 222222111
Q ss_pred -----------CCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcce
Q 010381 374 -----------QFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 374 -----------~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
.. ++|+.|++++|.+.+..+..++.+++|++|++++|.+.+..+.. +.++++|++|++++| .++.
T Consensus 262 ~~~~~~~~~~~~~-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~Ls~N-~l~~ 337 (455)
T 3v47_A 262 KDPDNFTFKGLEA-SGVKTCDLSKSKIFALLKSVFSHFTDLEQLTLAQNEINKIDDNA--FWGLTHLLKLNLSQN-FLGS 337 (455)
T ss_dssp CCCCTTTTGGGTT-SCCCEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECCSS-CCCE
T ss_pred ccCcccccccccc-cCceEEEecCccccccchhhcccCCCCCEEECCCCcccccChhH--hcCcccCCEEECCCC-ccCC
Confidence 12 58999999999998888888999999999999999987654433 678999999999996 4565
Q ss_pred e-eeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 443 W-TMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 443 l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+ +..++.+++|++|++++|......|..+..+++|++|++++|.
T Consensus 338 ~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~N~ 382 (455)
T 3v47_A 338 IDSRMFENLDKLEVLDLSYNHIRALGDQSFLGLPNLKELALDTNQ 382 (455)
T ss_dssp ECGGGGTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSC
T ss_pred cChhHhcCcccCCEEECCCCcccccChhhccccccccEEECCCCc
Confidence 5 5677899999999999998666668889999999999999986
No 23
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=5.6e-26 Score=233.02 Aligned_cols=298 Identities=17% Similarity=0.165 Sum_probs=189.4
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++++.+..+.....+. . .+++|++|.+.++.+. .+..+ .++++|++|++++|.++.++. +..+++|++|
T Consensus 68 ~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~l~~n~l~-----~~~~~-~~l~~L~~L~L~~n~l~~~~~-~~~l~~L~~L 139 (466)
T 1o6v_A 68 NNLTQINFSNNQLTDITP-LKNLTKLVDILMNNNQIA-----DITPL-ANLTNLTGLTLFNNQITDIDP-LKNLTNLNRL 139 (466)
T ss_dssp TTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCSEE
T ss_pred cCCCEEECCCCccCCchh-hhccccCCEEECCCCccc-----cChhh-cCCCCCCEEECCCCCCCCChH-HcCCCCCCEE
Confidence 566677776555554443 4 6677777777766654 23233 667777777777776665544 6666777777
Q ss_pred eecCCCCcccCh--------------------hhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCC
Q 010381 240 KLNIPSLKCLPS--------------------QLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNY 299 (512)
Q Consensus 240 ~l~~~~i~~lp~--------------------~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~ 299 (512)
++++|.++.++. .++++++|++|++++|.+..++. +..+++|++|++++|.+.+..|
T Consensus 140 ~l~~n~l~~~~~~~~l~~L~~L~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-- 216 (466)
T 1o6v_A 140 ELSSNTISDISALSGLTSLQQLSFGNQVTDLKPLANLTTLERLDISSNKVSDISV-LAKLTNLESLIATNNQISDITP-- 216 (466)
T ss_dssp EEEEEEECCCGGGTTCTTCSEEEEEESCCCCGGGTTCTTCCEEECCSSCCCCCGG-GGGCTTCSEEECCSSCCCCCGG--
T ss_pred ECCCCccCCChhhccCCcccEeecCCcccCchhhccCCCCCEEECcCCcCCCChh-hccCCCCCEEEecCCccccccc--
Confidence 776666554432 14445556666666665555432 5566666666666666544333
Q ss_pred CCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCc
Q 010381 300 SSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSL 379 (512)
Q Consensus 300 ~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L 379 (512)
++.+++|+.|++++..-.....+..+++|+.|++++|. .....+ +..+++|+.|++++|.+..+. .+..+ ++|
T Consensus 217 ~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~--l~~~~~--~~~l~~L~~L~l~~n~l~~~~--~~~~l-~~L 289 (466)
T 1o6v_A 217 LGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQ--ISNLAP--LSGLTKLTELKLGANQISNIS--PLAGL-TAL 289 (466)
T ss_dssp GGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSC--CCCCGG--GTTCTTCSEEECCSSCCCCCG--GGTTC-TTC
T ss_pred ccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCc--cccchh--hhcCCCCCEEECCCCccCccc--cccCC-Ccc
Confidence 55566666666664111222345666677777776662 222111 566677777777776665433 35566 788
Q ss_pred cEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeec
Q 010381 380 THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD 459 (512)
Q Consensus 380 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 459 (512)
+.|++++|.+.+..+ ++.+++|+.|++++|.+.+..+ +..+++|+.|++++| .++.++ .+..+++|+.|+++
T Consensus 290 ~~L~L~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~l~~n-~l~~~~-~l~~l~~L~~L~l~ 361 (466)
T 1o6v_A 290 TNLELNENQLEDISP--ISNLKNLTYLTLYFNNISDISP----VSSLTKLQRLFFYNN-KVSDVS-SLANLTNINWLSAG 361 (466)
T ss_dssp SEEECCSSCCSCCGG--GGGCTTCSEEECCSSCCSCCGG----GGGCTTCCEEECCSS-CCCCCG-GGTTCTTCCEEECC
T ss_pred CeEEcCCCcccCchh--hcCCCCCCEEECcCCcCCCchh----hccCccCCEeECCCC-ccCCch-hhccCCCCCEEeCC
Confidence 888888887765332 6778888888888887766543 356788888888885 555554 46788889999998
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 460 PCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 460 ~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|......| +..+++|+.|++++|+
T Consensus 362 ~n~l~~~~~--~~~l~~L~~L~l~~n~ 386 (466)
T 1o6v_A 362 HNQISDLTP--LANLTRITQLGLNDQA 386 (466)
T ss_dssp SSCCCBCGG--GTTCTTCCEEECCCEE
T ss_pred CCccCccch--hhcCCCCCEEeccCCc
Confidence 887544444 7888999999998886
No 24
>2z7x_B TOLL-like receptor 1, variable lymphocyte recepto; TLR2, TLR1, lipopeptide, innate immunity, glycoPro immune response, inflammatory response, leucine-rich repeat membrane, receptor; HET: NAG NDG MAN BMA PCJ; 2.10A {Homo sapiens}
Probab=99.94 E-value=1.2e-26 Score=241.68 Aligned_cols=308 Identities=15% Similarity=0.135 Sum_probs=200.2
Q ss_pred eEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeee
Q 010381 164 KRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKL 241 (512)
Q Consensus 164 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l 241 (512)
+.+.++.+....+|.... ++++.|++++|.+. .+ +..+..+++|++|++++|.++.+ |..|+++++|++|++
T Consensus 3 ~~l~ls~n~l~~ip~~~~-~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L 76 (520)
T 2z7x_B 3 FLVDRSKNGLIHVPKDLS-QKTTILNISQNYIS-----ELWTSDILSLSKLRILIISHNRIQYLDISVFKFNQELEYLDL 76 (520)
T ss_dssp CEEECTTSCCSSCCCSCC-TTCSEEECCSSCCC-----CCCHHHHTTCTTCCEEECCSSCCCEEEGGGGTTCTTCCEEEC
T ss_pred ceEecCCCCccccccccc-ccccEEECCCCccc-----ccChhhccccccccEEecCCCccCCcChHHhhcccCCCEEec
Confidence 456666555555443334 89999999999886 34 33449999999999999999955 788999999999999
Q ss_pred cCCCCcccChhhhcCcCCcEEecCCccccc--cchhhhccccCceeecCCcccCCCCCCCCCCCCCC--CeeecCC-CC-
Q 010381 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL--IFVSALH-PI- 315 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~l~l~~-~~- 315 (512)
++|.++.+|.. .+++|++|++++|.+.. +|..++++++|++|++++|.+.+ ..+..+++| +.+++.+ .+
T Consensus 77 s~N~l~~lp~~--~l~~L~~L~L~~N~l~~~~~p~~~~~l~~L~~L~L~~n~l~~---~~~~~l~~L~L~~L~l~~n~l~ 151 (520)
T 2z7x_B 77 SHNKLVKISCH--PTVNLKHLDLSFNAFDALPICKEFGNMSQLKFLGLSTTHLEK---SSVLPIAHLNISKVLLVLGETY 151 (520)
T ss_dssp CSSCCCEEECC--CCCCCSEEECCSSCCSSCCCCGGGGGCTTCCEEEEEESSCCG---GGGGGGTTSCEEEEEEEECTTT
T ss_pred CCCceeecCcc--ccCCccEEeccCCccccccchhhhccCCcceEEEecCcccch---hhccccccceeeEEEeeccccc
Confidence 99999999877 89999999999998875 57899999999999999999865 356667777 8887764 11
Q ss_pred --ccCchhcCC--------------------------CCCCCeEEEecc------------------------------c
Q 010381 316 --SCTPDILGR--------------------------LPNIQTLRISGD------------------------------L 337 (512)
Q Consensus 316 --~~~~~~l~~--------------------------l~~L~~L~l~~~------------------------------~ 337 (512)
...+..+.. +++|+.|+++++ .
T Consensus 152 ~~~~~~~~l~~l~~~~l~l~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~~~l~~l~~L~~L~l~~~~ 231 (520)
T 2z7x_B 152 GEKEDPEGLQDFNTESLHIVFPTNKEFHFILDVSVKTVANLELSNIKCVLEDNKCSYFLSILAKLQTNPKLSNLTLNNIE 231 (520)
T ss_dssp TSSCCTTTTTTCCEEEEEEECCSSSCCCCCCCCCCTTCSEEEECCEEECCSTTTTHHHHHHHHGGGGCTTCCEEEEEEEE
T ss_pred ccccccccccccccceEEEEeccCcchhhhhhhhhhcccceeeccccccccccccceeecchhhhccccchhhccccccc
Confidence 122222222 333333333332 1
Q ss_pred --h-----------------------hhhhhHHHhc-----cCCCCCcEEEeccCCC--C-----------CCccc----
Q 010381 338 --S-----------------------YYQSRVSKSL-----CKLQKLEWLKLVNESK--P-----------SRMVL---- 370 (512)
Q Consensus 338 --~-----------------------~~~~~l~~~l-----~~l~~L~~L~l~~~~~--p-----------~L~~l---- 370 (512)
. ...+.+|..+ .++++|+.++++.|.+ | +++.|
T Consensus 232 l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~p~~~~~~~~~~l~~L~~l~l~~n~~~~p~~~~~~~~~~~~L~~L~l~~ 311 (520)
T 2z7x_B 232 TTWNSFIRILQLVWHTTVWYFSISNVKLQGQLDFRDFDYSGTSLKALSIHQVVSDVFGFPQSYIYEIFSNMNIKNFTVSG 311 (520)
T ss_dssp EEHHHHHHHHHHHHTSSCSEEEEEEEEEESCCCCCCCCCCSCCCCEEEEEEEEECCCCSCTHHHHHHHHTCCCSEEEEES
T ss_pred cCHHHHHHHHHHhhhCcccEEEeecccccCccccchhhcccccCceeEeccccccceecchhhhhcccccCceeEEEcCC
Confidence 0 1111122222 2222222222222211 0 01111
Q ss_pred -------CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc--eeeeeCCCCCccccEEEecCCCCcc
Q 010381 371 -------SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR--KLACVGSGGFPELKVLHLKSMYWLD 441 (512)
Q Consensus 371 -------~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~--~~~~~~~~~~~~L~~L~L~~~~~l~ 441 (512)
....+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.+. .+.. ++.+++|++|++++|....
T Consensus 312 n~l~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~l~~~~~~--~~~l~~L~~L~Ls~N~l~~ 388 (520)
T 2z7x_B 312 TRMVHMLCPSKI-SPFLHLDFSNNLLTDTVFENCGHLTELETLILQMNQLKELSKIAEM--TTQMKSLQQLDISQNSVSY 388 (520)
T ss_dssp SCCCCCCCCSSC-CCCCEEECCSSCCCTTTTTTCCCCSSCCEEECCSSCCCBHHHHHHH--HTTCTTCCEEECCSSCCBC
T ss_pred CccccccchhhC-CcccEEEeECCccChhhhhhhccCCCCCEEEccCCccCccccchHH--HhhCCCCCEEECCCCcCCc
Confidence 01466 7888888888888877777888888888888888887652 1122 4667777777777743322
Q ss_pred eeeeC-CCCcc----------------------ccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 442 EWTMG-AGAMP----------------------KLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 442 ~l~~~-~~~l~----------------------~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.+|.. +..++ +|+.|++++|. ++.+|..+..+++|++|++++|.
T Consensus 389 ~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~L~~L~Ls~N~-l~~ip~~~~~l~~L~~L~L~~N~ 455 (520)
T 2z7x_B 389 DEKKGDCSWTKSLLSLNMSSNILTDTIFRCLPPRIKVLDLHSNK-IKSIPKQVVKLEALQELNVASNQ 455 (520)
T ss_dssp CGGGCSCCCCTTCCEEECCSSCCCGGGGGSCCTTCCEEECCSSC-CCCCCGGGGGCTTCCEEECCSSC
T ss_pred ccccchhccCccCCEEECcCCCCCcchhhhhcccCCEEECCCCc-ccccchhhhcCCCCCEEECCCCc
Confidence 25532 33344 55555555554 34566666677777777777775
No 25
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.94 E-value=1.6e-26 Score=242.19 Aligned_cols=316 Identities=19% Similarity=0.134 Sum_probs=215.1
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCcc-ccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPG-LENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~-l~~l~ 234 (512)
.+..++++.+..+.....++.. .+++|++|.+.+|.+. .+ +..|..+++|++|++++|.++.++.. ++.++
T Consensus 24 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~ 98 (549)
T 2z81_A 24 LTAAMKSLDLSFNKITYIGHGDLRACANLQVLILKSSRIN-----TIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLS 98 (549)
T ss_dssp CCTTCCEEECCSSCCCEECSSTTSSCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCT
T ss_pred CCCCccEEECcCCccCccChhhhhcCCcccEEECCCCCcC-----ccChhhccccccCCEEECCCCccCccCHHHhccCC
Confidence 3468899999977776665544 8899999999998876 33 33348899999999999998866654 88999
Q ss_pred ccCeeeecCCCCc--ccChhhhcCcCCcEEecCCcc-ccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 235 LLKYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSSY-IDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 235 ~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~-~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
+|++|++++|.++ ..|..++++++|++|++++|. ++.+| ..+.++++|++|++++|.+.+..|..++++++|+.++
T Consensus 99 ~L~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~ 178 (549)
T 2z81_A 99 SLKYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLT 178 (549)
T ss_dssp TCCEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEE
T ss_pred CCcEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEe
Confidence 9999999999888 456778899999999999985 67776 4688899999999999888777777776655544444
Q ss_pred cCCC-------------------------Ccc------------------------------------------------
Q 010381 311 ALHP-------------------------ISC------------------------------------------------ 317 (512)
Q Consensus 311 l~~~-------------------------~~~------------------------------------------------ 317 (512)
+... +..
T Consensus 179 l~~n~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~l 258 (549)
T 2z81_A 179 LHLSESAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVEF 258 (549)
T ss_dssp EECSBSTTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEEE
T ss_pred cccCcccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhcccccccc
Confidence 3210 000
Q ss_pred ------------------------------------------------------------------Cchhc-CCCCCCCe
Q 010381 318 ------------------------------------------------------------------TPDIL-GRLPNIQT 330 (512)
Q Consensus 318 ------------------------------------------------------------------~~~~l-~~l~~L~~ 330 (512)
.|..+ ..+++|+.
T Consensus 259 ~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~~ip~~~~~~l~~L~~ 338 (549)
T 2z81_A 259 DDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVFLVPCSFSQHLKSLEF 338 (549)
T ss_dssp ESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCCCCCHHHHHHCTTCCE
T ss_pred ccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccccCCHHHHhcCccccE
Confidence 00000 12333333
Q ss_pred EEEeccchhhhhhHHH---hccCCCCCcEEEeccCCCCCCcc--cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccce
Q 010381 331 LRISGDLSYYQSRVSK---SLCKLQKLEWLKLVNESKPSRMV--LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQV 405 (512)
Q Consensus 331 L~l~~~~~~~~~~l~~---~l~~l~~L~~L~l~~~~~p~L~~--l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~ 405 (512)
|++++| ...+..|. .++.+++|+.|++++|.+..+.. -.+..+ ++|+.|++++|.++ ..|..++.+++|++
T Consensus 339 L~Ls~N--~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 339 LDLSEN--LMVEEYLKNSACKGAWPSLQTLVLSQNHLRSMQKTGEILLTL-KNLTSLDISRNTFH-PMPDSCQWPEKMRF 414 (549)
T ss_dssp EECCSS--CCCHHHHHHHTCTTSSTTCCEEECTTSCCCCHHHHHHHGGGC-TTCCEEECTTCCCC-CCCSCCCCCTTCCE
T ss_pred EEccCC--ccccccccchhhhhccccCcEEEccCCcccccccchhhhhcC-CCCCEEECCCCCCc-cCChhhcccccccE
Confidence 333333 12222221 13344445555554444322110 024566 78888888888776 45666777777777
Q ss_pred eEEEcccccCcee----------------eeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCc
Q 010381 406 LKLKQNSYLGRKL----------------ACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPE 469 (512)
Q Consensus 406 L~l~~~~~~~~~~----------------~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~ 469 (512)
|++++|.+..... ... ...+++|++|++++| .++.+|. ...+++|+.|++++|......|.
T Consensus 415 L~Ls~N~l~~l~~~~~~~L~~L~Ls~N~l~~~-~~~l~~L~~L~Ls~N-~l~~ip~-~~~l~~L~~L~Ls~N~l~~~~~~ 491 (549)
T 2z81_A 415 LNLSSTGIRVVKTCIPQTLEVLDVSNNNLDSF-SLFLPRLQELYISRN-KLKTLPD-ASLFPVLLVMKISRNQLKSVPDG 491 (549)
T ss_dssp EECTTSCCSCCCTTSCTTCSEEECCSSCCSCC-CCCCTTCCEEECCSS-CCSSCCC-GGGCTTCCEEECCSSCCCCCCTT
T ss_pred EECCCCCcccccchhcCCceEEECCCCChhhh-cccCChhcEEECCCC-ccCcCCC-cccCccCCEEecCCCccCCcCHH
Confidence 7777776542110 000 236789999999985 6778876 46789999999999986555566
Q ss_pred ccCCCCCCcEEEccCCh
Q 010381 470 ELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 470 ~~~~l~~L~~L~l~~~~ 486 (512)
.+..+++|+.|++++|+
T Consensus 492 ~~~~l~~L~~L~l~~N~ 508 (549)
T 2z81_A 492 IFDRLTSLQKIWLHTNP 508 (549)
T ss_dssp GGGGCTTCCEEECCSSC
T ss_pred HHhcCcccCEEEecCCC
Confidence 78999999999999986
No 26
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.94 E-value=7.3e-26 Score=248.63 Aligned_cols=313 Identities=19% Similarity=0.165 Sum_probs=223.0
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC-ccCccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-QFPPGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-~lp~~l~~l~ 234 (512)
.+..+++|.++.+.+....+.. .+++|++|++++|.... .+ +..|.++++|++|+|++|.++ ..|+.|++++
T Consensus 22 lp~~l~~LdLs~N~i~~i~~~~~~~l~~L~~LdLs~n~~~~----~i~~~~f~~L~~L~~L~Ls~N~l~~~~p~~~~~l~ 97 (844)
T 3j0a_A 22 VLNTTERLLLSFNYIRTVTASSFPFLEQLQLLELGSQYTPL----TIDKEAFRNLPNLRILDLGSSKIYFLHPDAFQGLF 97 (844)
T ss_dssp SCTTCCEEEEESCCCCEECSSSCSSCCSCSEEEECTTCCCC----EECTTTTSSCTTCCEEECTTCCCCEECTTSSCSCS
T ss_pred CCCCcCEEECCCCcCCccChhHCcccccCeEEeCCCCCCcc----ccCHHHhcCCCCCCEEECCCCcCcccCHhHccCCc
Confidence 5688999999977777765555 99999999999985432 44 444499999999999999998 4588899999
Q ss_pred ccCeeeecCCCCc-ccChh--hhcCcCCcEEecCCccccccc--hhhhccccCceeecCCcccCCCCCCCCCCC--CCCC
Q 010381 235 LLKYLKLNIPSLK-CLPSQ--LCTLLNLQTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPTNYSSSL--KNLI 307 (512)
Q Consensus 235 ~L~~L~l~~~~i~-~lp~~--~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l--~~L~ 307 (512)
+|++|++++|.++ ..|.. ++++++|++|++++|.+..++ ..++++++|++|++++|.+.+..|..++.+ ++|+
T Consensus 98 ~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~~~~~~l~~l~~~~L~ 177 (844)
T 3j0a_A 98 HLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFLVCEHELEPLQGKTLS 177 (844)
T ss_dssp SCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCCCCSGGGHHHHHCSSC
T ss_pred ccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCeeCHHHcccccCCccc
Confidence 9999999999998 45655 889999999999999886653 568999999999999999988778777777 7888
Q ss_pred eeecCCC-C-ccCchhcCCCCC------CCeEEEeccchhhhhhHHHh--------------------------------
Q 010381 308 FVSALHP-I-SCTPDILGRLPN------IQTLRISGDLSYYQSRVSKS-------------------------------- 347 (512)
Q Consensus 308 ~l~l~~~-~-~~~~~~l~~l~~------L~~L~l~~~~~~~~~~l~~~-------------------------------- 347 (512)
.++++.+ + ...+..++.+.+ |+.|+++++. .....+..
T Consensus 178 ~L~L~~n~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~--l~~~~~~~~~~~l~~~~l~~L~l~~~~~~~~~~~~~l~~~ 255 (844)
T 3j0a_A 178 FFSLAANSLYSRVSVDWGKCMNPFRNMVLEILDVSGNG--WTVDITGNFSNAISKSQAFSLILAHHIMGAGFGFHNIKDP 255 (844)
T ss_dssp CCEECCSBSCCCCCCCCCSSSCTTTTCCBSEEBCSSCC--SSTTTTSGGGGTSCSCCBSEEECCSSCCBCSSSCSSSTTG
T ss_pred eEECCCCccccccccchhhcCCccccCceeEEecCCCc--CchhHHHHHHhhcCcccccceecccccccccccccccCCC
Confidence 8888751 1 233344444444 8888888772 11111111
Q ss_pred ----ccC--CCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeee
Q 010381 348 ----LCK--LQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACV 421 (512)
Q Consensus 348 ----l~~--l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~ 421 (512)
+.. .++|+.|++++|.+..+..-.+..+ ++|+.|++++|.+.+..+..+..+++|++|++++|.+.+..+..
T Consensus 256 ~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l-~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~- 333 (844)
T 3j0a_A 256 DQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETL-KDLKVLNLAYNKINKIADEAFYGLDNLQVLNLSYNLLGELYSSN- 333 (844)
T ss_dssp GGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSC-CCCCEEEEESCCCCEECTTTTTTCSSCCEEEEESCCCSCCCSCS-
T ss_pred ChhhhhccccCCccEEECCCCcccccChhhhhcC-CCCCEEECCCCcCCCCChHHhcCCCCCCEEECCCCCCCccCHHH-
Confidence 111 2567777777765532111156667 78888888888877666777778888888888877775543333
Q ss_pred CCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 422 GSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 422 ~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+.++++|+.|++++| .+..++ ..+..+++|+.|++++|. ++.++. +++|+.+++++|.
T Consensus 334 -~~~l~~L~~L~L~~N-~i~~~~~~~~~~l~~L~~L~Ls~N~-l~~i~~----~~~L~~L~l~~N~ 392 (844)
T 3j0a_A 334 -FYGLPKVAYIDLQKN-HIAIIQDQTFKFLEKLQTLDLRDNA-LTTIHF----IPSIPDIFLSGNK 392 (844)
T ss_dssp -CSSCTTCCEEECCSC-CCCCCCSSCSCSCCCCCEEEEETCC-SCCCSS----CCSCSEEEEESCC
T ss_pred -hcCCCCCCEEECCCC-CCCccChhhhcCCCCCCEEECCCCC-CCcccC----CCCcchhccCCCC
Confidence 567788888888875 455444 346677888888888776 333332 5556666655553
No 27
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.94 E-value=3.2e-26 Score=223.36 Aligned_cols=235 Identities=23% Similarity=0.226 Sum_probs=195.2
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
.....++.|+++++.++.+|..++++++|++|++++|.++.+|..++++++|++|++++|.+..+|..++++++|++|++
T Consensus 78 ~~~~~l~~L~L~~n~l~~lp~~l~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~~L~L 157 (328)
T 4fcg_A 78 ATQPGRVALELRSVPLPQFPDQAFRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLRELSI 157 (328)
T ss_dssp HTSTTCCEEEEESSCCSSCCSCGGGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCCEEEE
T ss_pred ccccceeEEEccCCCchhcChhhhhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCCEEEC
Confidence 34688999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
++|...+.+|..++.. .....++.+++|+.|++++|. . + .+|.
T Consensus 158 ~~n~~~~~~p~~~~~~-------------~~~~~~~~l~~L~~L~L~~n~--l--------------~-------~lp~- 200 (328)
T 4fcg_A 158 RACPELTELPEPLAST-------------DASGEHQGLVNLQSLRLEWTG--I--------------R-------SLPA- 200 (328)
T ss_dssp EEETTCCCCCSCSEEE-------------C-CCCEEESTTCCEEEEEEEC--C--------------C-------CCCG-
T ss_pred CCCCCccccChhHhhc-------------cchhhhccCCCCCEEECcCCC--c--------------C-------cchH-
Confidence 9998888777654331 112234556667777776661 1 1 1233
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
++..+ ++|++|++++|.+.+ .+..++.+++|++|++++|.+.+..+.. ++++++|++|++++|+....+|..+
T Consensus 201 ---~l~~l-~~L~~L~L~~N~l~~-l~~~l~~l~~L~~L~Ls~n~~~~~~p~~--~~~l~~L~~L~L~~n~~~~~~p~~~ 273 (328)
T 4fcg_A 201 ---SIANL-QNLKSLKIRNSPLSA-LGPAIHHLPKLEELDLRGCTALRNYPPI--FGGRAPLKRLILKDCSNLLTLPLDI 273 (328)
T ss_dssp ---GGGGC-TTCCEEEEESSCCCC-CCGGGGGCTTCCEEECTTCTTCCBCCCC--TTCCCCCCEEECTTCTTCCBCCTTG
T ss_pred ---hhcCC-CCCCEEEccCCCCCc-CchhhccCCCCCEEECcCCcchhhhHHH--hcCCCCCCEEECCCCCchhhcchhh
Confidence 56677 788888888888774 5556888999999999988887766554 6889999999999988888899888
Q ss_pred CCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+.+++|+.|++++|+.++.+|..+.++++|+.+++..+.
T Consensus 274 ~~l~~L~~L~L~~n~~~~~iP~~l~~L~~L~~l~l~~~~ 312 (328)
T 4fcg_A 274 HRLTQLEKLDLRGCVNLSRLPSLIAQLPANCIILVPPHL 312 (328)
T ss_dssp GGCTTCCEEECTTCTTCCCCCGGGGGSCTTCEEECCGGG
T ss_pred hcCCCCCEEeCCCCCchhhccHHHhhccCceEEeCCHHH
Confidence 999999999999999999999999999999999988654
No 28
>1o6v_A Internalin A; bacterial infection, extracellular recognition, cell WALL attached, leucine rich repeat; 1.5A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 1o6s_A* 1o6t_A 2omz_A 2omy_A 2omw_A 2omv_A 2omt_A 2omx_A 2omu_A
Probab=99.94 E-value=6.9e-26 Score=232.34 Aligned_cols=298 Identities=18% Similarity=0.167 Sum_probs=195.4
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++.+.+..+....++ .. .+++|++|+++++.+. .+..+ ..+++|++|++++|.++.++. ++.+++|++|
T Consensus 46 ~~l~~L~l~~~~i~~l~-~~~~l~~L~~L~Ls~n~l~-----~~~~~-~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L 117 (466)
T 1o6v_A 46 DQVTTLQADRLGIKSID-GVEYLNNLTQINFSNNQLT-----DITPL-KNLTKLVDILMNNNQIADITP-LANLTNLTGL 117 (466)
T ss_dssp HTCCEEECCSSCCCCCT-TGGGCTTCCEEECCSSCCC-----CCGGG-TTCTTCCEEECCSSCCCCCGG-GTTCTTCCEE
T ss_pred ccccEEecCCCCCccCc-chhhhcCCCEEECCCCccC-----Cchhh-hccccCCEEECCCCccccChh-hcCCCCCCEE
Confidence 56888888866555533 34 8999999999999876 34345 999999999999999997776 9999999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCc
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTP 319 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~ 319 (512)
++++|.++.+|. ++++++|++|++++|.+..++. +..+++|++|++++ .+.. .+ .++++++|+.|++++..-...
T Consensus 118 ~L~~n~l~~~~~-~~~l~~L~~L~l~~n~l~~~~~-~~~l~~L~~L~l~~-~~~~-~~-~~~~l~~L~~L~l~~n~l~~~ 192 (466)
T 1o6v_A 118 TLFNNQITDIDP-LKNLTNLNRLELSSNTISDISA-LSGLTSLQQLSFGN-QVTD-LK-PLANLTTLERLDISSNKVSDI 192 (466)
T ss_dssp ECCSSCCCCCGG-GTTCTTCSEEEEEEEEECCCGG-GTTCTTCSEEEEEE-SCCC-CG-GGTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCCCCCChH-HcCCCCCCEEECCCCccCCChh-hccCCcccEeecCC-cccC-ch-hhccCCCCCEEECcCCcCCCC
Confidence 999999998875 8999999999999998877764 66666666666542 2221 11 255555555555553111112
Q ss_pred hhcCCCCCCCeEEEeccchhhhhhHH--------------------HhccCCCCCcEEEeccCCCCCCcccCcCCCCCCc
Q 010381 320 DILGRLPNIQTLRISGDLSYYQSRVS--------------------KSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSL 379 (512)
Q Consensus 320 ~~l~~l~~L~~L~l~~~~~~~~~~l~--------------------~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L 379 (512)
..+..+++|+.|++++|. .....+ ..+..+++|+.|++++|.+..+. .+..+ ++|
T Consensus 193 ~~l~~l~~L~~L~l~~n~--l~~~~~~~~l~~L~~L~l~~n~l~~~~~l~~l~~L~~L~l~~n~l~~~~--~~~~l-~~L 267 (466)
T 1o6v_A 193 SVLAKLTNLESLIATNNQ--ISDITPLGILTNLDELSLNGNQLKDIGTLASLTNLTDLDLANNQISNLA--PLSGL-TKL 267 (466)
T ss_dssp GGGGGCTTCSEEECCSSC--CCCCGGGGGCTTCCEEECCSSCCCCCGGGGGCTTCSEEECCSSCCCCCG--GGTTC-TTC
T ss_pred hhhccCCCCCEEEecCCc--ccccccccccCCCCEEECCCCCcccchhhhcCCCCCEEECCCCccccch--hhhcC-CCC
Confidence 234455555555555542 111111 12334444555555444443322 24455 666
Q ss_pred cEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeec
Q 010381 380 THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVD 459 (512)
Q Consensus 380 ~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~ 459 (512)
+.|++++|.+.+..+ ++.+++|+.|++++|.+.+..+ +..+++|+.|++++| .+..++. +..+++|+.|+++
T Consensus 268 ~~L~l~~n~l~~~~~--~~~l~~L~~L~L~~n~l~~~~~----~~~l~~L~~L~L~~n-~l~~~~~-~~~l~~L~~L~l~ 339 (466)
T 1o6v_A 268 TELKLGANQISNISP--LAGLTALTNLELNENQLEDISP----ISNLKNLTYLTLYFN-NISDISP-VSSLTKLQRLFFY 339 (466)
T ss_dssp SEEECCSSCCCCCGG--GTTCTTCSEEECCSSCCSCCGG----GGGCTTCSEEECCSS-CCSCCGG-GGGCTTCCEEECC
T ss_pred CEEECCCCccCcccc--ccCCCccCeEEcCCCcccCchh----hcCCCCCCEEECcCC-cCCCchh-hccCccCCEeECC
Confidence 777777666654332 5667777777777776654322 356777888888775 3444433 5677888888888
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 460 PCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 460 ~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|. ++.++ .+..+++|+.|++++|+
T Consensus 340 ~n~-l~~~~-~l~~l~~L~~L~l~~n~ 364 (466)
T 1o6v_A 340 NNK-VSDVS-SLANLTNINWLSAGHNQ 364 (466)
T ss_dssp SSC-CCCCG-GGTTCTTCCEEECCSSC
T ss_pred CCc-cCCch-hhccCCCCCEEeCCCCc
Confidence 875 44443 57788888888888886
No 29
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.94 E-value=3.8e-25 Score=225.42 Aligned_cols=292 Identities=16% Similarity=0.098 Sum_probs=231.0
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCee
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYL 239 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L 239 (512)
..++++.+..+.....+ .. .+++|++|.+++|.+.. ++ + ..+++|++|++++|.++.++ ++.+++|++|
T Consensus 42 ~~L~~L~Ls~n~l~~~~-~l~~l~~L~~L~Ls~n~l~~-----~~-~-~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~~L 111 (457)
T 3bz5_A 42 ATLTSLDCHNSSITDMT-GIEKLTGLTKLICTSNNITT-----LD-L-SQNTNLTYLACDSNKLTNLD--VTPLTKLTYL 111 (457)
T ss_dssp TTCCEEECCSSCCCCCT-TGGGCTTCSEEECCSSCCSC-----CC-C-TTCTTCSEEECCSSCCSCCC--CTTCTTCCEE
T ss_pred CCCCEEEccCCCcccCh-hhcccCCCCEEEccCCcCCe-----Ec-c-ccCCCCCEEECcCCCCceee--cCCCCcCCEE
Confidence 67889999876666653 44 88999999999998763 22 4 88899999999999998775 8899999999
Q ss_pred eecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccC
Q 010381 240 KLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCT 318 (512)
Q Consensus 240 ~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~ 318 (512)
++++|.++.+| ++.+++|++|++++|.++.++ ++.+++|++|++++|...+.+ .++.+++|+.|++++ .+...
T Consensus 112 ~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~l~~l 185 (457)
T 3bz5_A 112 NCDTNKLTKLD--VSQNPLLTYLNCARNTLTEID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNKITEL 185 (457)
T ss_dssp ECCSSCCSCCC--CTTCTTCCEEECTTSCCSCCC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSCCCCC
T ss_pred ECCCCcCCeec--CCCCCcCCEEECCCCccceec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCcccee
Confidence 99999999876 889999999999999888875 888999999999999766655 478899999999986 33444
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE 398 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~ 398 (512)
+ ++.+++|+.|+++++. ... + .+..+++|+.|++++|.+..+ .+..+ ++|+.|++++|.+++.++..+.
T Consensus 186 ~--l~~l~~L~~L~l~~N~--l~~-~--~l~~l~~L~~L~Ls~N~l~~i---p~~~l-~~L~~L~l~~N~l~~~~~~~l~ 254 (457)
T 3bz5_A 186 D--VSQNKLLNRLNCDTNN--ITK-L--DLNQNIQLTFLDCSSNKLTEI---DVTPL-TQLTYFDCSVNPLTELDVSTLS 254 (457)
T ss_dssp C--CTTCTTCCEEECCSSC--CSC-C--CCTTCTTCSEEECCSSCCSCC---CCTTC-TTCSEEECCSSCCSCCCCTTCT
T ss_pred c--cccCCCCCEEECcCCc--CCe-e--ccccCCCCCEEECcCCccccc---Ccccc-CCCCEEEeeCCcCCCcCHHHCC
Confidence 3 7889999999999883 222 2 378889999999999877653 35677 8999999999998876554444
Q ss_pred CCc-------ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC--------CCCccccceeeecCCcc
Q 010381 399 KLP-------YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG--------AGAMPKLESLIVDPCAY 463 (512)
Q Consensus 399 ~l~-------~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~--------~~~l~~L~~L~l~~c~~ 463 (512)
++. +|+.|++++|...+..+ .+.+++|+.|++++|..+..+|.. +..+++|+.|++++|.
T Consensus 255 ~L~~L~l~~n~L~~L~l~~n~~~~~~~----~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L~L~~N~- 329 (457)
T 3bz5_A 255 KLTTLHCIQTDLLEIDLTHNTQLIYFQ----AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYLYLNNTE- 329 (457)
T ss_dssp TCCEEECTTCCCSCCCCTTCTTCCEEE----CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEEECTTCC-
T ss_pred CCCEEeccCCCCCEEECCCCccCCccc----ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEEECCCCc-
Confidence 443 45566666666555443 467899999999999877777642 4567888899998887
Q ss_pred cCCCCcccCCCCCCcEEEccCCh
Q 010381 464 LRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 464 l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++.++ +..+++|+.|++++|.
T Consensus 330 l~~l~--l~~l~~L~~L~l~~N~ 350 (457)
T 3bz5_A 330 LTELD--VSHNTKLKSLSCVNAH 350 (457)
T ss_dssp CSCCC--CTTCTTCSEEECCSSC
T ss_pred ccccc--cccCCcCcEEECCCCC
Confidence 45554 8899999999999986
No 30
>3a79_B TLR6, VLRB.59, TOLL-like receptor 6, variable lymphocyte recepto; diacyl lipopeptide, innate immunity, Leu repeat, cell membrane, cytoplasmic vesicle; HET: PXS NAG BMA NDG; 2.90A {Mus musculus}
Probab=99.94 E-value=4.5e-26 Score=239.39 Aligned_cols=140 Identities=13% Similarity=0.069 Sum_probs=115.1
Q ss_pred eeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeee
Q 010381 163 VKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLK 240 (512)
Q Consensus 163 ~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~ 240 (512)
.+++.+..+....+|.. -.++++.|++++|.+. .+ +..+..+++|++|++++|.++.+ |+.|+.+++|++|+
T Consensus 33 ~~~l~ls~~~L~~ip~~-~~~~L~~L~Ls~N~i~-----~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~ 106 (562)
T 3a79_B 33 ESMVDYSNRNLTHVPKD-LPPRTKALSLSQNSIS-----ELRMPDISFLSELRVLRLSHNRIRSLDFHVFLFNQDLEYLD 106 (562)
T ss_dssp CCEEECTTSCCCSCCTT-SCTTCCEEECCSSCCC-----CCCGGGTTTCTTCCEEECCSCCCCEECTTTTTTCTTCCEEE
T ss_pred CcEEEcCCCCCccCCCC-CCCCcCEEECCCCCcc-----ccChhhhccCCCccEEECCCCCCCcCCHHHhCCCCCCCEEE
Confidence 37788876666664443 3489999999999886 34 33449999999999999999955 67899999999999
Q ss_pred ecCCCCcccChhhhcCcCCcEEecCCccccccc--hhhhccccCceeecCCcccCCCCCCCCCCCCCC--CeeecCC
Q 010381 241 LNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL--IFVSALH 313 (512)
Q Consensus 241 l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L--~~l~l~~ 313 (512)
+++|.++.+|.. .+++|++|++++|.+..+| ..++++++|++|++++|.+... .+..+++| +.+++++
T Consensus 107 Ls~N~l~~lp~~--~l~~L~~L~Ls~N~l~~l~~p~~~~~l~~L~~L~L~~n~l~~~---~~~~l~~L~L~~L~L~~ 178 (562)
T 3a79_B 107 VSHNRLQNISCC--PMASLRHLDLSFNDFDVLPVCKEFGNLTKLTFLGLSAAKFRQL---DLLPVAHLHLSCILLDL 178 (562)
T ss_dssp CTTSCCCEECSC--CCTTCSEEECCSSCCSBCCCCGGGGGCTTCCEEEEECSBCCTT---TTGGGTTSCEEEEEEEE
T ss_pred CCCCcCCccCcc--ccccCCEEECCCCCccccCchHhhcccCcccEEecCCCccccC---chhhhhhceeeEEEeec
Confidence 999999999977 8999999999999988764 7899999999999999998753 44555555 8888764
No 31
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}
Probab=99.93 E-value=1.8e-25 Score=230.00 Aligned_cols=271 Identities=17% Similarity=0.125 Sum_probs=227.8
Q ss_pred CCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceee
Q 010381 210 FKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLN 286 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~ 286 (512)
.+.+++|++++|.++.+ |..|..+++|++|++++|.++.+ |..++++++|++|+|++|.+..+|.. +.++++|++|+
T Consensus 31 ~~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~ 110 (477)
T 2id5_A 31 PTETRLLDLGKNRIKTLNQDEFASFPHLEELELNENIVSAVEPGAFNNLFNLRTLGLRSNRLKLIPLGVFTGLSNLTKLD 110 (477)
T ss_dssp CTTCSEEECCSSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCSCCTTSSTTCTTCCEEE
T ss_pred CCCCcEEECCCCccceECHhHccCCCCCCEEECCCCccCEeChhhhhCCccCCEEECCCCcCCccCcccccCCCCCCEEE
Confidence 36799999999999955 57899999999999999999955 77899999999999999999999865 68999999999
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
+++|.+.+..|..+.++++|+.|++++ .+ ...+..+..+++|+.|++++| ......+..+..+++|+.|++++|.+
T Consensus 111 Ls~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~l~~l~~L~~L~l~~n~i 188 (477)
T 2id5_A 111 ISENKIVILLDYMFQDLYNLKSLEVGDNDLVYISHRAFSGLNSLEQLTLEKC--NLTSIPTEALSHLHGLIVLRLRHLNI 188 (477)
T ss_dssp CTTSCCCEECTTTTTTCTTCCEEEECCTTCCEECTTSSTTCTTCCEEEEESC--CCSSCCHHHHTTCTTCCEEEEESCCC
T ss_pred CCCCccccCChhHccccccCCEEECCCCccceeChhhccCCCCCCEEECCCC--cCcccChhHhcccCCCcEEeCCCCcC
Confidence 999999888888999999999999986 22 233557889999999999999 34444456788999999999999876
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT 444 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 444 (512)
..+..-.+..+ ++|+.|++++|...+..+.......+|++|++++|.+....... +..+++|+.|+|++| .++.++
T Consensus 189 ~~~~~~~~~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~Ls~n-~l~~~~ 264 (477)
T 2id5_A 189 NAIRDYSFKRL-YRLKVLEISHWPYLDTMTPNCLYGLNLTSLSITHCNLTAVPYLA--VRHLVYLRFLNLSYN-PISTIE 264 (477)
T ss_dssp CEECTTCSCSC-TTCCEEEEECCTTCCEECTTTTTTCCCSEEEEESSCCCSCCHHH--HTTCTTCCEEECCSS-CCCEEC
T ss_pred cEeChhhcccC-cccceeeCCCCccccccCcccccCccccEEECcCCcccccCHHH--hcCccccCeeECCCC-cCCccC
Confidence 43222267788 99999999999877766666666679999999999887543222 578999999999995 466665
Q ss_pred -eCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 445 -MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 445 -~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
..+..+++|+.|++++|......|..+..+++|++|++++|.
T Consensus 265 ~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~ 307 (477)
T 2id5_A 265 GSMLHELLRLQEIQLVGGQLAVVEPYAFRGLNYLRVLNVSGNQ 307 (477)
T ss_dssp TTSCTTCTTCCEEECCSSCCSEECTTTBTTCTTCCEEECCSSC
T ss_pred hhhccccccCCEEECCCCccceECHHHhcCcccCCEEECCCCc
Confidence 457889999999999998666668889999999999999985
No 32
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=1.9e-25 Score=240.27 Aligned_cols=321 Identities=16% Similarity=0.113 Sum_probs=207.9
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCc-cccCccc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFL 235 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~ 235 (512)
.+..++++.+..+.....+... .+++|++|++.++.+.. ..+..+.++++|++|++++|.++.+|. .|+.+++
T Consensus 23 ~~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~l~~ 98 (680)
T 1ziw_A 23 LPTNITVLNLTHNQLRRLPAANFTRYSQLTSLDVGFNTISK----LEPELCQKLPMLKVLNLQHNELSQLSDKTFAFCTN 98 (680)
T ss_dssp SCTTCSEEECCSSCCCCCCGGGGGGGTTCSEEECCSSCCCC----CCTTHHHHCTTCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred cCCCCcEEECCCCCCCCcCHHHHhCCCcCcEEECCCCccCc----cCHHHHhcccCcCEEECCCCccCccChhhhccCCC
Confidence 3456777777766555555443 67777777777776542 113333677777777777777776665 4777777
Q ss_pred cCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccccc-chhhhccccCceeecCCcccCCCCCCCC--CCCCCCCeeec
Q 010381 236 LKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSITLPAPPTNYS--SSLKNLIFVSA 311 (512)
Q Consensus 236 L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~--~~l~~L~~l~l 311 (512)
|++|++++|.++.+| ..++++++|++|++++|.+... |..++++++|++|++++|.+.+..+..+ ..+++|+.|++
T Consensus 99 L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L 178 (680)
T 1ziw_A 99 LTELHLMSNSIQKIKNNPFVKQKNLITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLEL 178 (680)
T ss_dssp CSEEECCSSCCCCCCSCTTTTCTTCCEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEEC
T ss_pred CCEEECCCCccCccChhHccccCCCCEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEEC
Confidence 777777777777554 4567777777777777766544 3446677777777777777655444333 24567777777
Q ss_pred CC-CC-ccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCC-CCccEEEEec
Q 010381 312 LH-PI-SCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFP-PSLTHLSLSN 386 (512)
Q Consensus 312 ~~-~~-~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp-~~L~~L~L~~ 386 (512)
++ .+ ...+..+..+.+|+.|++.++. ......++..+ ..++|+.|++++|.+.....-++..++ ++|++|++++
T Consensus 179 ~~n~l~~~~~~~~~~l~~L~~L~l~~~~l~~~~~~~~~~~l-~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~ 257 (680)
T 1ziw_A 179 SSNQIKEFSPGCFHAIGRLFGLFLNNVQLGPSLTEKLCLEL-ANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSY 257 (680)
T ss_dssp TTCCCCCBCTTGGGGSSEECEEECTTCCCHHHHHHHHHHHH-TTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTT
T ss_pred CCCcccccChhhhhhhhhhhhhhccccccChhhHHHHHHHh-hhccccEEEccCCcccccChhHhhccCcCCCCEEECCC
Confidence 64 11 2234455667777777766653 11112222222 346888888888765321111555551 3489999999
Q ss_pred ccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc-----eeee----CCCCccccceee
Q 010381 387 TELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD-----EWTM----GAGAMPKLESLI 457 (512)
Q Consensus 387 ~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-----~l~~----~~~~l~~L~~L~ 457 (512)
|.+.+..+..++.+++|++|++++|.+.+..+.. +.++++|+.|+++++..-. .+|. .++.+++|++|+
T Consensus 258 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l~~L~~L~ 335 (680)
T 1ziw_A 258 NNLNVVGNDSFAWLPQLEYFFLEYNNIQHLFSHS--LHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWLKCLEHLN 335 (680)
T ss_dssp SCCCEECTTTTTTCTTCCEEECCSCCBSEECTTT--TTTCTTCCEEECTTCBCCC------CCEECTTTTTTCTTCCEEE
T ss_pred CCcCccCcccccCcccccEeeCCCCccCccChhh--hcCCCCccEEeccchhhhcccccccccccChhhcccCCCCCEEE
Confidence 9887777778888899999999988876544333 6778888888887643211 2332 566788888888
Q ss_pred ecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 458 VDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 458 l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+++|......|..+..+++|++|++++|.
T Consensus 336 l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~ 364 (680)
T 1ziw_A 336 MEDNDIPGIKSNMFTGLINLKYLSLSNSF 364 (680)
T ss_dssp CCSCCBCCCCTTTTTTCTTCCEEECTTCB
T ss_pred CCCCccCCCChhHhccccCCcEEECCCCc
Confidence 88887655556667788888888888774
No 33
>1ziw_A TOLL-like receptor 3; innate immunity, immune system; HET: NDG NAG; 2.10A {Homo sapiens} PDB: 2a0z_A* 3cig_A* 3ciy_A*
Probab=99.93 E-value=3.1e-25 Score=238.56 Aligned_cols=317 Identities=17% Similarity=0.114 Sum_probs=165.9
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++++.+..+......+.. .+++|++|.+.+|.+. .+ +..|..+++|++|++++|.++.++ ..++++++|
T Consensus 49 ~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-----~l~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L 123 (680)
T 1ziw_A 49 SQLTSLDVGFNTISKLEPELCQKLPMLKVLNLQHNELS-----QLSDKTFAFCTNLTELHLMSNSIQKIKNNPFVKQKNL 123 (680)
T ss_dssp TTCSEEECCSSCCCCCCTTHHHHCTTCCEEECCSSCCC-----CCCTTTTTTCTTCSEEECCSSCCCCCCSCTTTTCTTC
T ss_pred CcCcEEECCCCccCccCHHHHhcccCcCEEECCCCccC-----ccChhhhccCCCCCEEECCCCccCccChhHccccCCC
Confidence 45556666544444433333 5566666666665544 23 222255666666666666655443 345566666
Q ss_pred CeeeecCCCCc-ccChhhhcCcCCcEEecCCccccccchh-h--hccccCceeecCCcccCCCC----------------
Q 010381 237 KYLKLNIPSLK-CLPSQLCTLLNLQTLQMPSSYIDQSPED-I--WMMQKLMHLNFGSITLPAPP---------------- 296 (512)
Q Consensus 237 ~~L~l~~~~i~-~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i--~~l~~L~~L~l~~~~~~~~~---------------- 296 (512)
++|++++|.++ ..|..++++++|++|++++|.+..++.. + ..+++|++|++++|.+.+..
T Consensus 124 ~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 203 (680)
T 1ziw_A 124 ITLDLSHNGLSSTKLGTQVQLENLQELLLSNNKIQALKSEELDIFANSSLKKLELSSNQIKEFSPGCFHAIGRLFGLFLN 203 (680)
T ss_dssp CEEECCSSCCSCCCCCSSSCCTTCCEEECCSSCCCCBCHHHHGGGTTCEESEEECTTCCCCCBCTTGGGGSSEECEEECT
T ss_pred CEEECCCCcccccCchhhcccccCCEEEccCCcccccCHHHhhccccccccEEECCCCcccccChhhhhhhhhhhhhhcc
Confidence 66666666555 2333455566666666666655544432 2 13355555555555544433
Q ss_pred -----------------------------------CCCCCCCCC--CCeeecCC-CC-ccCchhcCCCCCCCeEEEeccc
Q 010381 297 -----------------------------------TNYSSSLKN--LIFVSALH-PI-SCTPDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 297 -----------------------------------p~~~~~l~~--L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~ 337 (512)
|..+.+++. |+.|++++ .+ ...+..++.+++|+.|+++++
T Consensus 204 ~~~l~~~~~~~~~~~l~~~~L~~L~L~~n~l~~~~~~~~~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n- 282 (680)
T 1ziw_A 204 NVQLGPSLTEKLCLELANTSIRNLSLSNSQLSTTSNTTFLGLKWTNLTMLDLSYNNLNVVGNDSFAWLPQLEYFFLEYN- 282 (680)
T ss_dssp TCCCHHHHHHHHHHHHTTSCCCEEECTTSCCCEECTTTTGGGGGSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSC-
T ss_pred ccccChhhHHHHHHHhhhccccEEEccCCcccccChhHhhccCcCCCCEEECCCCCcCccCcccccCcccccEeeCCCC-
Confidence 334444433 56666553 11 122344566666777776666
Q ss_pred hhhhhhHHHhccCCCCCcEEEeccC---------CCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEE
Q 010381 338 SYYQSRVSKSLCKLQKLEWLKLVNE---------SKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKL 408 (512)
Q Consensus 338 ~~~~~~l~~~l~~l~~L~~L~l~~~---------~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l 408 (512)
......+..+..+++|+.|+++++ .+|.+....+..+ ++|++|++++|.+.+..+..+..+++|++|++
T Consensus 283 -~l~~~~~~~~~~l~~L~~L~L~~~~~~~~~~~~~lp~i~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L 360 (680)
T 1ziw_A 283 -NIQHLFSHSLHGLFNVRYLNLKRSFTKQSISLASLPKIDDFSFQWL-KCLEHLNMEDNDIPGIKSNMFTGLINLKYLSL 360 (680)
T ss_dssp -CBSEECTTTTTTCTTCCEEECTTCBCCC------CCEECTTTTTTC-TTCCEEECCSCCBCCCCTTTTTTCTTCCEEEC
T ss_pred -ccCccChhhhcCCCCccEEeccchhhhcccccccccccChhhcccC-CCCCEEECCCCccCCCChhHhccccCCcEEEC
Confidence 344444555666677777777653 2333333355677 88999999999888877777888888888888
Q ss_pred EcccccCceeeeeCCC--CCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCC-cccCCCCCCcEEEccCC
Q 010381 409 KQNSYLGRKLACVGSG--GFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRKLDLHWP 485 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~--~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~ 485 (512)
++|.+....+....+. ..++|+.|++++|......|..+..+++|+.|++++|.....+| ..+..+++|++|++++|
T Consensus 361 s~n~~~~~~l~~~~f~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~l~~L~~L~Ls~n 440 (680)
T 1ziw_A 361 SNSFTSLRTLTNETFVSLAHSPLHILNLTKNKISKIESDAFSWLGHLEVLDLGLNEIGQELTGQEWRGLENIFEIYLSYN 440 (680)
T ss_dssp TTCBSCCCEECTTTTGGGTTSCCCEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCEEECCSGGGTTCTTCCEEECCSC
T ss_pred CCCchhhhhcchhhhcccccCcCceEECCCCCCCeEChhhhhCCCCCCEEeCCCCcCccccCcccccCcccccEEecCCC
Confidence 8775432222110000 11344444444432211222334444444444444444333332 23344444444444444
No 34
>3j0a_A TOLL-like receptor 5; membrane protein, leucine-rich repeat, asymmetric homodimer, glycoprotein, immune system; HET: NAG FUC; 26.00A {Homo sapiens}
Probab=99.93 E-value=3.2e-25 Score=243.51 Aligned_cols=310 Identities=19% Similarity=0.149 Sum_probs=240.8
Q ss_pred EEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcC-Ccc-CccccCccccCeeeecC
Q 010381 166 CFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVL-DQF-PPGLENLFLLKYLKLNI 243 (512)
Q Consensus 166 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l-~~l-p~~l~~l~~L~~L~l~~ 243 (512)
+..+.+....+|. ..+++++|++++|.+.. ..+..|.++++|++|++++|.. ..+ |..|+++++|++|++++
T Consensus 9 ~dcs~~~L~~vP~--lp~~l~~LdLs~N~i~~----i~~~~~~~l~~L~~LdLs~n~~~~~i~~~~f~~L~~L~~L~Ls~ 82 (844)
T 3j0a_A 9 AFYRFCNLTQVPQ--VLNTTERLLLSFNYIRT----VTASSFPFLEQLQLLELGSQYTPLTIDKEAFRNLPNLRILDLGS 82 (844)
T ss_dssp EEESCCCSSCCCS--SCTTCCEEEEESCCCCE----ECSSSCSSCCSCSEEEECTTCCCCEECTTTTSSCTTCCEEECTT
T ss_pred EEccCCCCCCCCC--CCCCcCEEECCCCcCCc----cChhHCcccccCeEEeCCCCCCccccCHHHhcCCCCCCEEECCC
Confidence 3334344555554 67899999999998862 2233349999999999999964 455 78899999999999999
Q ss_pred CCCccc-ChhhhcCcCCcEEecCCccccc-cchh--hhccccCceeecCCcccCCCCC-CCCCCCCCCCeeecCCC-C-c
Q 010381 244 PSLKCL-PSQLCTLLNLQTLQMPSSYIDQ-SPED--IWMMQKLMHLNFGSITLPAPPT-NYSSSLKNLIFVSALHP-I-S 316 (512)
Q Consensus 244 ~~i~~l-p~~~~~l~~L~~L~L~~~~~~~-lp~~--i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~l~~~-~-~ 316 (512)
|.+..+ |..++++++|++|+|++|.+.. +|.. +.++++|++|++++|.+.+..+ ..++++++|+.|+++++ + .
T Consensus 83 N~l~~~~p~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~L~~L~~L~Ls~N~i~~ 162 (844)
T 3j0a_A 83 SKIYFLHPDAFQGLFHLFELRLYFCGLSDAVLKDGYFRNLKALTRLDLSKNQIRSLYLHPSFGKLNSLKSIDFSSNQIFL 162 (844)
T ss_dssp CCCCEECTTSSCSCSSCCCEECTTCCCSSCCSTTCCCSSCSSCCEEEEESCCCCCCCCCGGGGTCSSCCEEEEESSCCCC
T ss_pred CcCcccCHhHccCCcccCEeeCcCCCCCcccccCccccccCCCCEEECCCCcccccccchhHhhCCCCCEEECCCCcCCe
Confidence 999954 8889999999999999998865 5554 8899999999999999977554 57899999999999862 1 3
Q ss_pred cCchhcCCC--CCCCeEEEeccchhhhhhHHHhccCCCC------CcEEEeccCCCC--------------CCccc----
Q 010381 317 CTPDILGRL--PNIQTLRISGDLSYYQSRVSKSLCKLQK------LEWLKLVNESKP--------------SRMVL---- 370 (512)
Q Consensus 317 ~~~~~l~~l--~~L~~L~l~~~~~~~~~~l~~~l~~l~~------L~~L~l~~~~~p--------------~L~~l---- 370 (512)
..+..++.+ ++|+.|+++++ ......+..+..+.+ |+.|++++|.+. .+..+
T Consensus 163 ~~~~~l~~l~~~~L~~L~L~~n--~l~~~~~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~~~~~l~~~~l~~L~l~~ 240 (844)
T 3j0a_A 163 VCEHELEPLQGKTLSFFSLAAN--SLYSRVSVDWGKCMNPFRNMVLEILDVSGNGWTVDITGNFSNAISKSQAFSLILAH 240 (844)
T ss_dssp CCSGGGHHHHHCSSCCCEECCS--BSCCCCCCCCCSSSCTTTTCCBSEEBCSSCCSSTTTTSGGGGTSCSCCBSEEECCS
T ss_pred eCHHHcccccCCccceEECCCC--ccccccccchhhcCCccccCceeEEecCCCcCchhHHHHHHhhcCcccccceeccc
Confidence 344556655 89999999998 354445555555544 999999987431 11111
Q ss_pred ------------------CcCCC-CCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccE
Q 010381 371 ------------------SEYQF-PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKV 431 (512)
Q Consensus 371 ------------------~~~~l-p~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~ 431 (512)
.+..+ +++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..+.. +.++++|++
T Consensus 241 ~~~~~~~~~~~l~~~~~~~f~~l~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~i~~~~~~~--~~~l~~L~~ 318 (844)
T 3j0a_A 241 HIMGAGFGFHNIKDPDQNTFAGLARSSVRHLDLSHGFVFSLNSRVFETLKDLKVLNLAYNKINKIADEA--FYGLDNLQV 318 (844)
T ss_dssp SCCBCSSSCSSSTTGGGTTTTTTTTSCCCEEECTTCCCCEECSCCSSSCCCCCEEEEESCCCCEECTTT--TTTCSSCCE
T ss_pred ccccccccccccCCCChhhhhccccCCccEEECCCCcccccChhhhhcCCCCCEEECCCCcCCCCChHH--hcCCCCCCE
Confidence 01111 268999999999998888888999999999999999987654433 688999999
Q ss_pred EEecCCCCccee-eeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 432 LHLKSMYWLDEW-TMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 432 L~L~~~~~l~~l-~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|++++|. ++.+ +..+..+++|+.|++++|......+..+..+++|++|++++|.
T Consensus 319 L~Ls~N~-l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~ 373 (844)
T 3j0a_A 319 LNLSYNL-LGELYSSNFYGLPKVAYIDLQKNHIAIIQDQTFKFLEKLQTLDLRDNA 373 (844)
T ss_dssp EEEESCC-CSCCCSCSCSSCTTCCEEECCSCCCCCCCSSCSCSCCCCCEEEEETCC
T ss_pred EECCCCC-CCccCHHHhcCCCCCCEEECCCCCCCccChhhhcCCCCCCEEECCCCC
Confidence 9999964 5544 6788999999999999997544445568899999999999997
No 35
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.93 E-value=2.1e-26 Score=223.28 Aligned_cols=245 Identities=19% Similarity=0.233 Sum_probs=115.5
Q ss_pred eeEEEEecCCcCC---ccCccccCccccCeeeecC-CCCc-ccChhhhcCcCCcEEecCCcccc-ccchhhhccccCcee
Q 010381 212 YLRVLDLGSAVLD---QFPPGLENLFLLKYLKLNI-PSLK-CLPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHL 285 (512)
Q Consensus 212 ~L~~L~l~~~~l~---~lp~~l~~l~~L~~L~l~~-~~i~-~lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L 285 (512)
+++.|+++++.++ .+|..++++++|++|++++ |.+. .+|..++++++|++|++++|.+. .+|..+.++++|++|
T Consensus 51 ~l~~L~L~~~~l~~~~~~~~~l~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~L~~L 130 (313)
T 1ogq_A 51 RVNNLDLSGLNLPKPYPIPSSLANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKTLVTL 130 (313)
T ss_dssp CEEEEEEECCCCSSCEECCGGGGGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTTCCEE
T ss_pred eEEEEECCCCCccCCcccChhHhCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCCCCEE
Confidence 4555555555544 3455555555555555552 4444 45555555555555555555443 445555555555555
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCC-CCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLP-NIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE 362 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~-~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 362 (512)
++++|.+.+.+|..++++++|+.|++++ .+ +..|..++.++ +|+.|+++++ .....+|..+..++ |+.|++++|
T Consensus 131 ~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N--~l~~~~~~~~~~l~-L~~L~Ls~N 207 (313)
T 1ogq_A 131 DFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRN--RLTGKIPPTFANLN-LAFVDLSRN 207 (313)
T ss_dssp ECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSS--EEEEECCGGGGGCC-CSEEECCSS
T ss_pred eCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCC--eeeccCChHHhCCc-ccEEECcCC
Confidence 5555555444444444444444444432 11 24555666666 7778877777 33334444444443 555555554
Q ss_pred CCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcce
Q 010381 363 SKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 363 ~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
.+.....-.+..+ ++|+.|++++|.+.+..+ .+..+++|++|++++|.+.+..+.. +..+++|+.|++++|.....
T Consensus 208 ~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~~~p~~--l~~l~~L~~L~Ls~N~l~~~ 283 (313)
T 1ogq_A 208 MLEGDASVLFGSD-KNTQKIHLAKNSLAFDLG-KVGLSKNLNGLDLRNNRIYGTLPQG--LTQLKFLHSLNVSFNNLCGE 283 (313)
T ss_dssp EEEECCGGGCCTT-SCCSEEECCSSEECCBGG-GCCCCTTCCEEECCSSCCEECCCGG--GGGCTTCCEEECCSSEEEEE
T ss_pred cccCcCCHHHhcC-CCCCEEECCCCceeeecC-cccccCCCCEEECcCCcccCcCChH--HhcCcCCCEEECcCCccccc
Confidence 3210000033344 445555555544433222 2344444445555444444333222 33444444444444322223
Q ss_pred eeeCCCCccccceeeecCCccc
Q 010381 443 WTMGAGAMPKLESLIVDPCAYL 464 (512)
Q Consensus 443 l~~~~~~l~~L~~L~l~~c~~l 464 (512)
+|.. +.+++|+.+++++|+.+
T Consensus 284 ip~~-~~l~~L~~l~l~~N~~l 304 (313)
T 1ogq_A 284 IPQG-GNLQRFDVSAYANNKCL 304 (313)
T ss_dssp CCCS-TTGGGSCGGGTCSSSEE
T ss_pred CCCC-ccccccChHHhcCCCCc
Confidence 3332 44444444444444433
No 36
>2z63_A TOLL-like receptor 4, variable lymphocyte recepto; TLR4, MD-2, LPS, immune system; HET: NAG FUL; 2.00A {Homo sapiens}
Probab=99.93 E-value=2.8e-25 Score=233.82 Aligned_cols=317 Identities=18% Similarity=0.155 Sum_probs=216.6
Q ss_pred CCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcc
Q 010381 159 PMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLF 234 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~ 234 (512)
.+..++++.+..+....+.... .+++|++|++++|.+. .+ +..|.++++|++|++++|.++.+| ..|+.++
T Consensus 26 l~~~l~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~n~i~-----~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (570)
T 2z63_A 26 LPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLS 100 (570)
T ss_dssp SCSSCCEEECCSCCCCEECTTTTTTCSSCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCT
T ss_pred ccccccEEEccCCccCccChhHhhCCCCceEEECCCCcCC-----ccCcccccCchhCCEEeCcCCcCCccCHhhhcCcc
Confidence 5678999999977777666554 8999999999999876 34 444499999999999999998655 7899999
Q ss_pred ccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccc--cchhhhccccCceeecCCcccCCCCCCCCCCCCCC----C
Q 010381 235 LLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNL----I 307 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L----~ 307 (512)
+|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++++++|++|++++|.+.+..|..++.+++| .
T Consensus 101 ~L~~L~L~~n~l~~l~~~~~~~l~~L~~L~L~~n~l~~~~lp~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~~~~ 180 (570)
T 2z63_A 101 SLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNL 180 (570)
T ss_dssp TCCEEECTTSCCCCSTTCSCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECTTSCCCEECGGGGHHHHTCTTCCC
T ss_pred ccccccccccccccCCCccccccccccEEecCCCccceecChhhhcccCCCCEEeCcCCccceecHHHccchhccchhhh
Confidence 99999999999998776 58999999999999998865 78999999999999999998765444444444443 3
Q ss_pred eeecCCC-Cc----------------------------------------------------------------------
Q 010381 308 FVSALHP-IS---------------------------------------------------------------------- 316 (512)
Q Consensus 308 ~l~l~~~-~~---------------------------------------------------------------------- 316 (512)
.+++.++ +.
T Consensus 181 ~L~l~~n~l~~~~~~~~~~~~L~~L~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~l~~l~l~ 260 (570)
T 2z63_A 181 SLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIE 260 (570)
T ss_dssp EEECTTCCCCEECTTTTTTCEEEEEEEESCCSCTTHHHHHHHTTTTCEEEEEEEEECCCCSSCEECCTTTTGGGGGSEEE
T ss_pred hcccCCCCceecCHHHhccCcceeEecccccccccchhhhhcCccccceeeeccccccCchhhhhcchhhhccccccchh
Confidence 3333210 00
Q ss_pred ------------cCchhcCCCCCCCeEEEeccchhhhhhHHHhc------------------------------------
Q 010381 317 ------------CTPDILGRLPNIQTLRISGDLSYYQSRVSKSL------------------------------------ 348 (512)
Q Consensus 317 ------------~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l------------------------------------ 348 (512)
..+..+..+++|+.|+++++. ...+|..+
T Consensus 261 ~l~l~~~~~~~~~~~~~~~~l~~L~~L~l~~~~---l~~l~~~~~~~~L~~L~l~~n~~~~l~~~~l~~L~~L~l~~n~~ 337 (570)
T 2z63_A 261 EFRLAYLDYYLDDIIDLFNCLTNVSSFSLVSVT---IERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKG 337 (570)
T ss_dssp EEEEEETTEEESCSTTTTGGGTTCSEEEEESCE---ECSCCBCCSCCCCSEEEEESCBCSSCCBCBCSSCCEEEEESCBS
T ss_pred hhhhhcchhhhhhchhhhcCcCcccEEEecCcc---chhhhhhhccCCccEEeeccCcccccCcccccccCEEeCcCCcc
Confidence 011122233444444444431 11122111
Q ss_pred ------cCCCCCcEEEeccCCC-------------CCCccc------------CcCCCCCCccEEEEecccCCCCCC-CC
Q 010381 349 ------CKLQKLEWLKLVNESK-------------PSRMVL------------SEYQFPPSLTHLSLSNTELKEDPM-PT 396 (512)
Q Consensus 349 ------~~l~~L~~L~l~~~~~-------------p~L~~l------------~~~~lp~~L~~L~L~~~~~~~~~~-~~ 396 (512)
..+++|+.|++++|.+ ++|+.| .+..+ ++|+.|++++|.+.+..+ ..
T Consensus 338 ~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~ 416 (570)
T 2z63_A 338 GNAFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGL-EQLEHLDFQHSNLKQMSEFSV 416 (570)
T ss_dssp CCBCCCCBCTTCCEEECCSSCCBEEEEEEHHHHTCSCCCEEECCSCSEEEEEEEEETC-TTCCEEECTTSEEESCTTSCT
T ss_pred ccccccccCCCCCEEeCcCCccCccccccccccccCccCEEECCCCcccccccccccc-CCCCEEEccCCccccccchhh
Confidence 2233344444433321 122222 13345 666666666666554433 35
Q ss_pred CCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc-ceeeeCCCCccccceeeecCCcccCCCCcccCCCC
Q 010381 397 LEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL-DEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQ 475 (512)
Q Consensus 397 l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~ 475 (512)
+..+++|++|++++|.+.+..+.. +.++++|++|++++|... ..+|..+..+++|+.|++++|......|..+..++
T Consensus 417 ~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~n~l~~~~~p~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~ 494 (570)
T 2z63_A 417 FLSLRNLIYLDISHTHTRVAFNGI--FNGLSSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTAFNSLS 494 (570)
T ss_dssp TTTCTTCCEEECTTSCCEECCTTT--TTTCTTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred hhcCCCCCEEeCcCCcccccchhh--hhcCCcCcEEECcCCcCccccchhhhhcccCCCEEECCCCccccCChhhhhccc
Confidence 677778888888777765543332 567888888888886543 25777788888999999998886655677888889
Q ss_pred CCcEEEccCCh
Q 010381 476 SLRKLDLHWPQ 486 (512)
Q Consensus 476 ~L~~L~l~~~~ 486 (512)
+|++|++++|.
T Consensus 495 ~L~~L~l~~n~ 505 (570)
T 2z63_A 495 SLQVLNMASNQ 505 (570)
T ss_dssp TCCEEECCSSC
T ss_pred CCCEEeCCCCc
Confidence 99999998885
No 37
>3bz5_A Internalin-J, INLJ; leucine rich repeat (LRR), cysteine ladder, asparagine ladder, virulence factor, solenoid, cell WALL; 2.70A {Listeria monocytogenes}
Probab=99.93 E-value=7.9e-25 Score=223.07 Aligned_cols=270 Identities=19% Similarity=0.090 Sum_probs=222.4
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.+++|++|+++++.+.. ++.+ ..+++|++|++++|.++.+| ++.+++|++|++++|.++.+| ++++++|+
T Consensus 40 ~l~~L~~L~Ls~n~l~~-----~~~l-~~l~~L~~L~Ls~n~l~~~~--~~~l~~L~~L~Ls~N~l~~~~--~~~l~~L~ 109 (457)
T 3bz5_A 40 QLATLTSLDCHNSSITD-----MTGI-EKLTGLTKLICTSNNITTLD--LSQNTNLTYLACDSNKLTNLD--VTPLTKLT 109 (457)
T ss_dssp HHTTCCEEECCSSCCCC-----CTTG-GGCTTCSEEECCSSCCSCCC--CTTCTTCSEEECCSSCCSCCC--CTTCTTCC
T ss_pred HcCCCCEEEccCCCccc-----Chhh-cccCCCCEEEccCCcCCeEc--cccCCCCCEEECcCCCCceee--cCCCCcCC
Confidence 68999999999998763 3555 88999999999999999876 899999999999999999886 88999999
Q ss_pred EEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC--CccCchhcCCCCCCCeEEEeccch
Q 010381 261 TLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP--ISCTPDILGRLPNIQTLRISGDLS 338 (512)
Q Consensus 261 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~--~~~~~~~l~~l~~L~~L~l~~~~~ 338 (512)
+|++++|.+..+| ++.+++|++|++++|.+.+ ++ ++++++|+.+++++. ++.. .++.+++|+.|+++++.
T Consensus 110 ~L~L~~N~l~~l~--~~~l~~L~~L~l~~N~l~~-l~--l~~l~~L~~L~l~~n~~~~~~--~~~~l~~L~~L~ls~n~- 181 (457)
T 3bz5_A 110 YLNCDTNKLTKLD--VSQNPLLTYLNCARNTLTE-ID--VSHNTQLTELDCHLNKKITKL--DVTPQTQLTTLDCSFNK- 181 (457)
T ss_dssp EEECCSSCCSCCC--CTTCTTCCEEECTTSCCSC-CC--CTTCTTCCEEECTTCSCCCCC--CCTTCTTCCEEECCSSC-
T ss_pred EEECCCCcCCeec--CCCCCcCCEEECCCCccce-ec--cccCCcCCEEECCCCCccccc--ccccCCcCCEEECCCCc-
Confidence 9999999998886 8999999999999999976 33 889999999999863 1222 57889999999999983
Q ss_pred hhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCcee
Q 010381 339 YYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKL 418 (512)
Q Consensus 339 ~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~ 418 (512)
...+| +..+++|+.|++++|.+..+ .+..+ ++|+.|++++|.+++ .| ++.+++|+.|++++|.+.+..
T Consensus 182 --l~~l~--l~~l~~L~~L~l~~N~l~~~---~l~~l-~~L~~L~Ls~N~l~~-ip--~~~l~~L~~L~l~~N~l~~~~- 249 (457)
T 3bz5_A 182 --ITELD--VSQNKLLNRLNCDTNNITKL---DLNQN-IQLTFLDCSSNKLTE-ID--VTPLTQLTYFDCSVNPLTELD- 249 (457)
T ss_dssp --CCCCC--CTTCTTCCEEECCSSCCSCC---CCTTC-TTCSEEECCSSCCSC-CC--CTTCTTCSEEECCSSCCSCCC-
T ss_pred --cceec--cccCCCCCEEECcCCcCCee---ccccC-CCCCEEECcCCcccc-cC--ccccCCCCEEEeeCCcCCCcC-
Confidence 33344 78899999999999987654 46788 999999999999987 33 789999999999999987753
Q ss_pred eeeCCCCCccc----------cEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCc--------ccCCCCCCcEE
Q 010381 419 ACVGSGGFPEL----------KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPE--------ELWCIQSLRKL 480 (512)
Q Consensus 419 ~~~~~~~~~~L----------~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~--------~~~~l~~L~~L 480 (512)
.+.+++| +.|++++|..+..+| .+.+++|+.|++++|+.++.+|. .+..+++|++|
T Consensus 250 ----~~~l~~L~~L~l~~n~L~~L~l~~n~~~~~~~--~~~l~~L~~L~Ls~n~~l~~l~~~~~~L~~L~l~~~~~L~~L 323 (457)
T 3bz5_A 250 ----VSTLSKLTTLHCIQTDLLEIDLTHNTQLIYFQ--AEGCRKIKELDVTHNTQLYLLDCQAAGITELDLSQNPKLVYL 323 (457)
T ss_dssp ----CTTCTTCCEEECTTCCCSCCCCTTCTTCCEEE--CTTCTTCCCCCCTTCTTCCEEECTTCCCSCCCCTTCTTCCEE
T ss_pred ----HHHCCCCCEEeccCCCCCEEECCCCccCCccc--ccccccCCEEECCCCcccceeccCCCcceEechhhcccCCEE
Confidence 3445555 455566655555666 46789999999999987766654 24566788888
Q ss_pred EccCCh
Q 010381 481 DLHWPQ 486 (512)
Q Consensus 481 ~l~~~~ 486 (512)
++++|.
T Consensus 324 ~L~~N~ 329 (457)
T 3bz5_A 324 YLNNTE 329 (457)
T ss_dssp ECTTCC
T ss_pred ECCCCc
Confidence 888875
No 38
>2z81_A CD282 antigen, TOLL-like receptor 2, variable lymphocyte recepto; TLR2, PAM3CSK4, lipopeptide, innate immunity, cytoplasmic VE glycoprotein; HET: NAG BMA MAN PCJ; 1.80A {Mus musculus} PDB: 2z82_A* 3a7c_A* 3a79_A* 3a7b_A* 2z7x_A*
Probab=99.92 E-value=2e-25 Score=233.88 Aligned_cols=295 Identities=16% Similarity=0.126 Sum_probs=214.2
Q ss_pred CCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChh-hhcCcCC
Q 010381 182 DMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNL 259 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L 259 (512)
.+++++|+++++.+.. ..+..+..+++|++|++++|.++.++ ..|+.+++|++|++++|.++.+|.. ++++++|
T Consensus 25 ~~~L~~L~Ls~n~l~~----~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~~~~l~~L 100 (549)
T 2z81_A 25 TAAMKSLDLSFNKITY----IGHGDLRACANLQVLILKSSRINTIEGDAFYSLGSLEHLDLSDNHLSSLSSSWFGPLSSL 100 (549)
T ss_dssp CTTCCEEECCSSCCCE----ECSSTTSSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCSCCHHHHTTCTTC
T ss_pred CCCccEEECcCCccCc----cChhhhhcCCcccEEECCCCCcCccChhhccccccCCEEECCCCccCccCHHHhccCCCC
Confidence 4789999999998762 12333399999999999999999554 7899999999999999999977765 9999999
Q ss_pred cEEecCCccccc--cchhhhccccCceeecCCcccCCCCC-CCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEe
Q 010381 260 QTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPT-NYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRIS 334 (512)
Q Consensus 260 ~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~ 334 (512)
++|++++|.+.. .|..++++++|++|++++|...+.+| ..++++++|+.|++++ .+ ...+..++.+++|++|+++
T Consensus 101 ~~L~Ls~n~l~~~~~~~~~~~l~~L~~L~L~~n~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~l~~l~~L~~L~l~ 180 (549)
T 2z81_A 101 KYLNLMGNPYQTLGVTSLFPNLTNLQTLRIGNVETFSEIRRIDFAGLTSLNELEIKALSLRNYQSQSLKSIRDIHHLTLH 180 (549)
T ss_dssp CEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEECTTTTTTCSEEEEEEEE
T ss_pred cEEECCCCcccccchhhhhhccCCccEEECCCCccccccCHhhhhcccccCeeeccCCcccccChhhhhccccCceEecc
Confidence 999999998874 46779999999999999998656665 5799999999999985 22 3467778888888888888
Q ss_pred ccchhhhhhHHHh-ccCCCCCcEEEeccCCCCCC--------------ccc-----------------CcCCC-------
Q 010381 335 GDLSYYQSRVSKS-LCKLQKLEWLKLVNESKPSR--------------MVL-----------------SEYQF------- 375 (512)
Q Consensus 335 ~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~p~L--------------~~l-----------------~~~~l------- 375 (512)
.+. ...++.. +..+++|+.|++++|.+..+ +.+ .+..+
T Consensus 181 ~n~---~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~l~~~~~~~~~L~~l~ 257 (549)
T 2z81_A 181 LSE---SAFLLEIFADILSSVRYLELRDTNLARFQFSPLPVDEVSSPMKKLAFRGSVLTDESFNELLKLLRYILELSEVE 257 (549)
T ss_dssp CSB---STTHHHHHHHSTTTBSEEEEESCBCTTCCCCCCSSCCCCCCCCEEEEESCEEEHHHHHHHHGGGGGCTTCCEEE
T ss_pred cCc---ccccchhhHhhcccccEEEccCCccccccccccchhhhhhcccceeccccccchhHHHHHHHHhhhhccccccc
Confidence 873 2333433 34577788888777544221 111 00011
Q ss_pred ---------------------------------------------------CCCccEEEEecccCCCCCCCCC-CCCccc
Q 010381 376 ---------------------------------------------------PPSLTHLSLSNTELKEDPMPTL-EKLPYV 403 (512)
Q Consensus 376 ---------------------------------------------------p~~L~~L~L~~~~~~~~~~~~l-~~l~~L 403 (512)
.++|+.|++++|.+. ..|..+ +.+++|
T Consensus 258 l~~~~~~~~~~~~~~~~~~~~~l~~L~~L~l~~~~i~~~~~~~~l~~~~~~~~~L~~L~l~~n~l~-~ip~~~~~~l~~L 336 (549)
T 2z81_A 258 FDDCTLNGLGDFNPSESDVVSELGKVETVTIRRLHIPQFYLFYDLSTVYSLLEKVKRITVENSKVF-LVPCSFSQHLKSL 336 (549)
T ss_dssp EESCEEECCSCCCCCTTTCCCCCTTCCEEEEESCBCSCGGGSCCCCHHHHHSTTCCEEEEESSCCC-CCCHHHHHHCTTC
T ss_pred cccccccccccccccchhhhhhhcccccccccccccchhhhcccchhhhhhcccceEEEeccCccc-cCCHHHHhcCccc
Confidence 024455555555543 233232 467888
Q ss_pred ceeEEEcccccCceeee-eCCCCCccccEEEecCCCCcceee---eCCCCccccceeeecCCcccCCCCcccCCCCCCcE
Q 010381 404 QVLKLKQNSYLGRKLAC-VGSGGFPELKVLHLKSMYWLDEWT---MGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRK 479 (512)
Q Consensus 404 ~~L~l~~~~~~~~~~~~-~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~ 479 (512)
++|++++|.+.+..+.. ..++.+++|++|++++| .++.++ ..+..+++|+.|++++|. ++.+|..+..+++|++
T Consensus 337 ~~L~Ls~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N-~l~~~~~~~~~~~~l~~L~~L~Ls~N~-l~~lp~~~~~~~~L~~ 414 (549)
T 2z81_A 337 EFLDLSENLMVEEYLKNSACKGAWPSLQTLVLSQN-HLRSMQKTGEILLTLKNLTSLDISRNT-FHPMPDSCQWPEKMRF 414 (549)
T ss_dssp CEEECCSSCCCHHHHHHHTCTTSSTTCCEEECTTS-CCCCHHHHHHHGGGCTTCCEEECTTCC-CCCCCSCCCCCTTCCE
T ss_pred cEEEccCCccccccccchhhhhccccCcEEEccCC-cccccccchhhhhcCCCCCEEECCCCC-CccCChhhcccccccE
Confidence 88888888876644211 01467788888888885 555554 236778888888888886 5578887888888888
Q ss_pred EEccCCh
Q 010381 480 LDLHWPQ 486 (512)
Q Consensus 480 L~l~~~~ 486 (512)
|++++|.
T Consensus 415 L~Ls~N~ 421 (549)
T 2z81_A 415 LNLSSTG 421 (549)
T ss_dssp EECTTSC
T ss_pred EECCCCC
Confidence 8888875
No 39
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=2.5e-24 Score=210.48 Aligned_cols=283 Identities=14% Similarity=0.133 Sum_probs=159.1
Q ss_pred CeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCccc-ChhhhcCcCCcE
Q 010381 184 YLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQT 261 (512)
Q Consensus 184 ~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~ 261 (512)
+++.+.+.++... .++. .-.+.|++|++++|.++.++. .++.+++|++|++++|.++.+ |..++.+++|++
T Consensus 32 ~l~~l~~~~~~l~-----~lp~--~~~~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~ 104 (330)
T 1xku_A 32 HLRVVQCSDLGLE-----KVPK--DLPPDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLER 104 (330)
T ss_dssp ETTEEECTTSCCC-----SCCC--SCCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCE
T ss_pred CCeEEEecCCCcc-----ccCc--cCCCCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCE
Confidence 5666666655543 2211 112566777777777765543 567777777777777777744 666777777777
Q ss_pred EecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-C---ccCchhcCCCCCCCeEEEeccc
Q 010381 262 LQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-I---SCTPDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 262 L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-~---~~~~~~l~~l~~L~~L~l~~~~ 337 (512)
|++++|.++.+|..+. ++|++|++++|.+.+..+..+.++++|+.+++++. + +..+..+..+++|+.|+++++.
T Consensus 105 L~Ls~n~l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~ 182 (330)
T 1xku_A 105 LYLSKNQLKELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTN 182 (330)
T ss_dssp EECCSSCCSBCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSC
T ss_pred EECCCCcCCccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCc
Confidence 7777777766665544 56777777777665444445666666666666641 1 1334455666666666666652
Q ss_pred hhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 338 SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 338 ~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
...+|..+. ++|+.|++++|.+..+..-.+..+ ++|++|++++|.+.+..+..++.+++|++|++++|.+.. .
T Consensus 183 ---l~~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l-~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~-l 255 (330)
T 1xku_A 183 ---ITTIPQGLP--PSLTELHLDGNKITKVDAASLKGL-NNLAKLGLSFNSISAVDNGSLANTPHLRELHLNNNKLVK-V 255 (330)
T ss_dssp ---CCSCCSSCC--TTCSEEECTTSCCCEECTGGGTTC-TTCCEEECCSSCCCEECTTTGGGSTTCCEEECCSSCCSS-C
T ss_pred ---cccCCcccc--ccCCEEECCCCcCCccCHHHhcCC-CCCCEEECCCCcCceeChhhccCCCCCCEEECCCCcCcc-C
Confidence 222332221 566666666655432110044555 666666666666655555556666666666666665542 2
Q ss_pred eeeeCCCCCccccEEEecCCCCcceeeeC-CC------CccccceeeecCCcccC--CCCcccCCCCCCcEEEccCC
Q 010381 418 LACVGSGGFPELKVLHLKSMYWLDEWTMG-AG------AMPKLESLIVDPCAYLR--KLPEELWCIQSLRKLDLHWP 485 (512)
Q Consensus 418 ~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~------~l~~L~~L~l~~c~~l~--~lp~~~~~l~~L~~L~l~~~ 485 (512)
+. . +..+++|++|++++| .++.++.. +. ..+.|+.|++++|+... ..|..+..+++|+.+++++|
T Consensus 256 p~-~-l~~l~~L~~L~l~~N-~i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~~~~~~i~~~~f~~~~~l~~l~L~~N 329 (330)
T 1xku_A 256 PG-G-LADHKYIQVVYLHNN-NISAIGSNDFCPPGYNTKKASYSGVSLFSNPVQYWEIQPSTFRCVYVRAAVQLGNY 329 (330)
T ss_dssp CT-T-TTTCSSCCEEECCSS-CCCCCCTTSSSCSSCCTTSCCCSEEECCSSSSCGGGSCGGGGTTCCCGGGEEC---
T ss_pred Ch-h-hccCCCcCEEECCCC-cCCccChhhcCCcccccccccccceEeecCcccccccCccccccccceeEEEeccc
Confidence 11 1 455666666666663 34444321 11 23556666666666422 23445566666666666655
No 40
>1xku_A Decorin; proteoglycan, leucine-rich repeat, structural protein; HET: NAG; 2.15A {Bos taurus} SCOP: c.10.2.7 PDB: 1xec_A* 1xcd_A*
Probab=99.92 E-value=8.7e-25 Score=213.80 Aligned_cols=262 Identities=18% Similarity=0.199 Sum_probs=166.0
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCcccccc-chhhhccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~ 289 (512)
++++++++++.++.+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..+ |..+.++++|++|++++
T Consensus 32 ~l~~l~~~~~~l~~lp~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (330)
T 1xku_A 32 HLRVVQCSDLGLEKVPKDLP--PDTALLDLQNNKITEIKDGDFKNLKNLHTLILINNKISKISPGAFAPLVKLERLYLSK 109 (330)
T ss_dssp ETTEEECTTSCCCSCCCSCC--TTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCS
T ss_pred CCeEEEecCCCccccCccCC--CCCeEEECCCCcCCEeChhhhccCCCCCEEECCCCcCCeeCHHHhcCCCCCCEEECCC
Confidence 56777777777776666543 567777777777775554 567777777777777766665 55677777777777777
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCcc-CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISC-TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+. .+|..+. ++|+.|++++ .+.. .+..+..+++|+.|+++++.-......+..+..+++|+.|++++|.+..+
T Consensus 110 n~l~-~l~~~~~--~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l~~L~~L~l~~n~l~~l 186 (330)
T 1xku_A 110 NQLK-ELPEKMP--KTLQELRVHENEITKVRKSVFNGLNQMIVVELGTNPLKSSGIENGAFQGMKKLSYIRIADTNITTI 186 (330)
T ss_dssp SCCS-BCCSSCC--TTCCEEECCSSCCCBBCHHHHTTCTTCCEEECCSSCCCGGGBCTTGGGGCTTCCEEECCSSCCCSC
T ss_pred CcCC-ccChhhc--ccccEEECCCCcccccCHhHhcCCccccEEECCCCcCCccCcChhhccCCCCcCEEECCCCccccC
Confidence 7764 4555544 5677777764 2222 23346677777777777763111223445566777777777777655431
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
. ..++++|++|++++|.+.+..+..++.+++|++|++++|.+.+..... +..+++|++|++++| .++.+|..+
T Consensus 187 ~----~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~l 259 (330)
T 1xku_A 187 P----QGLPPSLTELHLDGNKITKVDAASLKGLNNLAKLGLSFNSISAVDNGS--LANTPHLRELHLNNN-KLVKVPGGL 259 (330)
T ss_dssp C----SSCCTTCSEEECTTSCCCEECTGGGTTCTTCCEEECCSSCCCEECTTT--GGGSTTCCEEECCSS-CCSSCCTTT
T ss_pred C----ccccccCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCceeChhh--ccCCCCCCEEECCCC-cCccCChhh
Confidence 1 122267777777777776655666777777777777777665433222 456677777777774 556677667
Q ss_pred CCccccceeeecCCcccCCCCc-ccC------CCCCCcEEEccCCh
Q 010381 448 GAMPKLESLIVDPCAYLRKLPE-ELW------CIQSLRKLDLHWPQ 486 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~-~~~------~l~~L~~L~l~~~~ 486 (512)
..+++|++|++++|+ ++.+|. .+. ..++|+.+++++||
T Consensus 260 ~~l~~L~~L~l~~N~-i~~~~~~~f~~~~~~~~~~~l~~l~l~~N~ 304 (330)
T 1xku_A 260 ADHKYIQVVYLHNNN-ISAIGSNDFCPPGYNTKKASYSGVSLFSNP 304 (330)
T ss_dssp TTCSSCCEEECCSSC-CCCCCTTSSSCSSCCTTSCCCSEEECCSSS
T ss_pred ccCCCcCEEECCCCc-CCccChhhcCCcccccccccccceEeecCc
Confidence 777777777777776 333332 221 23667777777776
No 41
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=8e-25 Score=214.22 Aligned_cols=263 Identities=17% Similarity=0.180 Sum_probs=165.9
Q ss_pred CeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchhhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 288 (512)
++|++|++++|.++.+ |..++.+++|++|++++|.++.+ |..++++++|++|++++|.+..+|..+. ++|++|+++
T Consensus 54 ~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~--~~L~~L~l~ 131 (332)
T 2ft3_A 54 PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYISKNHLVEIPPNLP--SSLVELRIH 131 (332)
T ss_dssp TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECCSSCCCSCCSSCC--TTCCEEECC
T ss_pred CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECCCCcCCccCcccc--ccCCEEECC
Confidence 4566666666666544 33566666666666666666643 4456666666666666666666655443 566666666
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCC-C---ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHP-I---SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~-~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
+|.+....+..+.++++|+.|+++++ + +..+..+..+ +|+.|+++++. ...+|..+. ++|+.|++++|.+
T Consensus 132 ~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~---l~~l~~~~~--~~L~~L~l~~n~i 205 (332)
T 2ft3_A 132 DNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAK---LTGIPKDLP--ETLNELHLDHNKI 205 (332)
T ss_dssp SSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSB---CSSCCSSSC--SSCSCCBCCSSCC
T ss_pred CCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCC---CCccCcccc--CCCCEEECCCCcC
Confidence 66665433334566666666666541 1 1233444455 67777777662 222333322 5778888887765
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT 444 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~ 444 (512)
..+..-.+..+ ++|+.|++++|.+.+..+..++.+++|++|++++|.+.. .+.. +..+++|+.|++++| .++.++
T Consensus 206 ~~~~~~~l~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~-lp~~--l~~l~~L~~L~l~~N-~l~~~~ 280 (332)
T 2ft3_A 206 QAIELEDLLRY-SKLYRLGLGHNQIRMIENGSLSFLPTLRELHLDNNKLSR-VPAG--LPDLKLLQVVYLHTN-NITKVG 280 (332)
T ss_dssp CCCCTTSSTTC-TTCSCCBCCSSCCCCCCTTGGGGCTTCCEEECCSSCCCB-CCTT--GGGCTTCCEEECCSS-CCCBCC
T ss_pred CccCHHHhcCC-CCCCEEECCCCcCCcCChhHhhCCCCCCEEECCCCcCee-cChh--hhcCccCCEEECCCC-CCCccC
Confidence 43221156777 889999999998887777778888999999999888763 2222 567888999999884 566554
Q ss_pred e-CCC------CccccceeeecCCccc--CCCCcccCCCCCCcEEEccCCh
Q 010381 445 M-GAG------AMPKLESLIVDPCAYL--RKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 445 ~-~~~------~l~~L~~L~l~~c~~l--~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
. .+. ..++|+.|++.+|+.. ...|..+..+++|+.+++++|.
T Consensus 281 ~~~~~~~~~~~~~~~l~~L~l~~N~~~~~~~~~~~~~~l~~L~~l~l~~n~ 331 (332)
T 2ft3_A 281 VNDFCPVGFGVKRAYYNGISLFNNPVPYWEVQPATFRCVTDRLAIQFGNYK 331 (332)
T ss_dssp TTSSSCSSCCSSSCCBSEEECCSSSSCGGGSCGGGGTTBCCSTTEEC----
T ss_pred hhHccccccccccccccceEeecCcccccccCcccccccchhhhhhccccc
Confidence 2 222 2577899999999865 4556678889999999998875
No 42
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.92 E-value=7.7e-24 Score=225.60 Aligned_cols=320 Identities=17% Similarity=0.102 Sum_probs=214.9
Q ss_pred CCCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccCc
Q 010381 158 EPMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLENL 233 (512)
Q Consensus 158 ~~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l 233 (512)
..+..+++|.++.+.+..+++.. .+++|++|++++|.+. .+ +..|.++++|++|+|++|.++.+|. .|.++
T Consensus 49 ~lp~~~~~LdLs~N~i~~l~~~~f~~l~~L~~L~Ls~N~i~-----~i~~~~f~~L~~L~~L~Ls~N~l~~l~~~~f~~L 123 (635)
T 4g8a_A 49 NLPFSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQ-----TIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGL 123 (635)
T ss_dssp SSCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCC-----EECTTTTTTCTTCCEEECTTCCCCEECGGGGTTC
T ss_pred CCCcCCCEEEeeCCCCCCCCHHHHhCCCCCCEEECCCCcCC-----CcChhHhcCCCCCCEEEccCCcCCCCCHHHhcCC
Confidence 35678999999988888877665 8999999999999876 45 4445999999999999999998774 58999
Q ss_pred cccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccc--cchhhhccccCceeecCCcccCCCCCCCCCCCC------
Q 010381 234 FLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK------ 304 (512)
Q Consensus 234 ~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~------ 304 (512)
++|++|++++|.++.+|. .++++++|++|++++|.+.. +|..++.+++|++|++++|.+.+..|..+..+.
T Consensus 124 ~~L~~L~Ls~N~l~~l~~~~~~~L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~ 203 (635)
T 4g8a_A 124 SSLQKLVAVETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLN 203 (635)
T ss_dssp TTCCEEECTTSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCC
T ss_pred CCCCEEECCCCcCCCCChhhhhcCcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhh
Confidence 999999999999998776 48999999999999997754 577889999999999999877542221111100
Q ss_pred ----------------------------------------------C---------------------------------
Q 010381 305 ----------------------------------------------N--------------------------------- 305 (512)
Q Consensus 305 ----------------------------------------------~--------------------------------- 305 (512)
.
T Consensus 204 ~~~~ls~n~l~~i~~~~~~~~~~~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~ 283 (635)
T 4g8a_A 204 LSLDLSLNPMNFIQPGAFKEIRLHKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTI 283 (635)
T ss_dssp CEEECTTCCCCEECTTTTTTCEEEEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEE
T ss_pred hhhhcccCcccccCcccccchhhhhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhh
Confidence 0
Q ss_pred ----------------------------------------------CCeeecCC-CCc--------------------cC
Q 010381 306 ----------------------------------------------LIFVSALH-PIS--------------------CT 318 (512)
Q Consensus 306 ----------------------------------------------L~~l~l~~-~~~--------------------~~ 318 (512)
|+.+++.+ .+. ..
T Consensus 284 ~~l~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~ 363 (635)
T 4g8a_A 284 EEFRLAYLDYYLDGIIDLFNCLTNVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGN 363 (635)
T ss_dssp EEEEEECCCSCEEECTTTTGGGTTCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCC
T ss_pred hhhhhhhhcccccchhhhhhhhcccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCC
Confidence 00111000 000 00
Q ss_pred chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC----------CCCCc--------------------
Q 010381 319 PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES----------KPSRM-------------------- 368 (512)
Q Consensus 319 ~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~----------~p~L~-------------------- 368 (512)
+.....+++|+.|+++.+........+.....+.+|+.+++..+. ++.++
T Consensus 364 ~~~~~~l~~L~~L~ls~n~l~~~~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~ 443 (635)
T 4g8a_A 364 AFSEVDLPSLEFLDLSRNGLSFKGCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLS 443 (635)
T ss_dssp BCCCCBCTTCCEEECCSSCCBEEEECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTT
T ss_pred Ccccccccccccchhhccccccccccccchhhhhhhhhhhccccccccccccccccccccchhhhhcccccccccccccc
Confidence 000112344444544443200111111222223333333332210 00111
Q ss_pred -----cc-------------CcCCCCCCccEEEEecccCC-CCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccc
Q 010381 369 -----VL-------------SEYQFPPSLTHLSLSNTELK-EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429 (512)
Q Consensus 369 -----~l-------------~~~~lp~~L~~L~L~~~~~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 429 (512)
.+ .+..+ +.++.|++++|... ...+..+..+++|++|++++|.+.+..+.. ++++++|
T Consensus 444 l~~l~~l~ls~n~l~~~~~~~~~~~-~~L~~L~Ls~N~~~~~~~~~~~~~l~~L~~L~Ls~N~L~~l~~~~--f~~l~~L 520 (635)
T 4g8a_A 444 LRNLIYLDISHTHTRVAFNGIFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSL 520 (635)
T ss_dssp CTTCCEEECTTSCCEECCTTTTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTC
T ss_pred ccccccccccccccccccccccccc-hhhhhhhhhhcccccccCchhhhhccccCEEECCCCccCCcChHH--HcCCCCC
Confidence 00 23345 77888888887533 345667888899999999988886654433 6889999
Q ss_pred cEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCcccCCC-CCCcEEEccCCh
Q 010381 430 KVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCI-QSLRKLDLHWPQ 486 (512)
Q Consensus 430 ~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~~~~ 486 (512)
++|+|++| .++.++ ..+..+++|+.|++++|......|..+..+ ++|+.|++++||
T Consensus 521 ~~L~Ls~N-~l~~l~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~l~~~L~~L~L~~Np 578 (635)
T 4g8a_A 521 QVLNMSHN-NFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 578 (635)
T ss_dssp CEEECTTS-CCCBCCCGGGTTCTTCCEEECTTSCCCBCCSSCTTCCCTTCCEEECTTCC
T ss_pred CEEECCCC-cCCCCChhHHhCCCCCCEEECCCCcCCCCCHHHHHhhhCcCCEEEeeCCC
Confidence 99999995 566664 557889999999999998777777788887 689999999865
No 43
>2ft3_A Biglycan; proteoglycan, dimer interface, structural protein, signaling; HET: NAG FLC; 3.40A {Bos taurus}
Probab=99.92 E-value=3.6e-24 Score=209.58 Aligned_cols=262 Identities=17% Similarity=0.181 Sum_probs=214.3
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccccc-chhhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~ 288 (512)
.++++++++++.++.+|..+. ++|++|++++|.++.++ ..++++++|++|++++|.+..+ |..+.++++|++|+++
T Consensus 33 c~l~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 110 (332)
T 2ft3_A 33 CHLRVVQCSDLGLKAVPKEIS--PDTTLLDLQNNDISELRKDDFKGLQHLYALVLVNNKISKIHEKAFSPLRKLQKLYIS 110 (332)
T ss_dssp EETTEEECCSSCCSSCCSCCC--TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECGGGSTTCTTCCEEECC
T ss_pred ccCCEEECCCCCccccCCCCC--CCCeEEECCCCcCCccCHhHhhCCCCCcEEECCCCccCccCHhHhhCcCCCCEEECC
Confidence 378999999999999998764 68999999999999764 5799999999999999988877 6779999999999999
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
+|.+. .+|..+. ++|+.|++++ .+...+ ..+..+++|+.|+++++.-......+..+..+ +|+.|++++|.+..
T Consensus 111 ~n~l~-~l~~~~~--~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~~l-~L~~L~l~~n~l~~ 186 (332)
T 2ft3_A 111 KNHLV-EIPPNLP--SSLVELRIHDNRIRKVPKGVFSGLRNMNCIEMGGNPLENSGFEPGAFDGL-KLNYLRISEAKLTG 186 (332)
T ss_dssp SSCCC-SCCSSCC--TTCCEEECCSSCCCCCCSGGGSSCSSCCEEECCSCCCBGGGSCTTSSCSC-CCSCCBCCSSBCSS
T ss_pred CCcCC-ccCcccc--ccCCEEECCCCccCccCHhHhCCCccCCEEECCCCccccCCCCcccccCC-ccCEEECcCCCCCc
Confidence 99986 6777665 8999999986 334444 35889999999999998411123445667777 99999999987654
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG 446 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 446 (512)
+ -..++++|++|++++|.+.+..+..+..+++|++|++++|.+.+..... +..+++|+.|++++| .++.+|..
T Consensus 187 l----~~~~~~~L~~L~l~~n~i~~~~~~~l~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~lp~~ 259 (332)
T 2ft3_A 187 I----PKDLPETLNELHLDHNKIQAIELEDLLRYSKLYRLGLGHNQIRMIENGS--LSFLPTLRELHLDNN-KLSRVPAG 259 (332)
T ss_dssp C----CSSSCSSCSCCBCCSSCCCCCCTTSSTTCTTCSCCBCCSSCCCCCCTTG--GGGCTTCCEEECCSS-CCCBCCTT
T ss_pred c----CccccCCCCEEECCCCcCCccCHHHhcCCCCCCEEECCCCcCCcCChhH--hhCCCCCCEEECCCC-cCeecChh
Confidence 2 1223379999999999998888888999999999999999987654433 578899999999995 67789988
Q ss_pred CCCccccceeeecCCcccCCCCc-ccCC------CCCCcEEEccCCh
Q 010381 447 AGAMPKLESLIVDPCAYLRKLPE-ELWC------IQSLRKLDLHWPQ 486 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l~~lp~-~~~~------l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++|+ ++.+|. .+.. .++|+.+++++||
T Consensus 260 l~~l~~L~~L~l~~N~-l~~~~~~~~~~~~~~~~~~~l~~L~l~~N~ 305 (332)
T 2ft3_A 260 LPDLKLLQVVYLHTNN-ITKVGVNDFCPVGFGVKRAYYNGISLFNNP 305 (332)
T ss_dssp GGGCTTCCEEECCSSC-CCBCCTTSSSCSSCCSSSCCBSEEECCSSS
T ss_pred hhcCccCCEEECCCCC-CCccChhHccccccccccccccceEeecCc
Confidence 9999999999999998 444443 3332 5789999999998
No 44
>1ogq_A PGIP-2, polygalacturonase inhibiting protein; inhibitor; HET: NAG; 1.7A {Phaseolus vulgaris} SCOP: c.10.2.8
Probab=99.91 E-value=3.7e-25 Score=214.56 Aligned_cols=249 Identities=16% Similarity=0.214 Sum_probs=209.4
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecC-CcCC-ccCccccCccccCeeeecCCCCc-ccChhhhcCcC
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGS-AVLD-QFPPGLENLFLLKYLKLNIPSLK-CLPSQLCTLLN 258 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~-~~l~-~lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~~l~~ 258 (512)
.+++.|.+.++.+.+ ...+ ..+ .++++|++|++++ |.+. .+|..++++++|++|++++|.++ .+|..++++++
T Consensus 50 ~~l~~L~L~~~~l~~--~~~~~~~l-~~l~~L~~L~L~~~n~l~~~~p~~l~~l~~L~~L~Ls~n~l~~~~p~~~~~l~~ 126 (313)
T 1ogq_A 50 YRVNNLDLSGLNLPK--PYPIPSSL-ANLPYLNFLYIGGINNLVGPIPPAIAKLTQLHYLYITHTNVSGAIPDFLSQIKT 126 (313)
T ss_dssp CCEEEEEEECCCCSS--CEECCGGG-GGCTTCSEEEEEEETTEESCCCGGGGGCTTCSEEEEEEECCEEECCGGGGGCTT
T ss_pred ceEEEEECCCCCccC--CcccChhH-hCCCCCCeeeCCCCCcccccCChhHhcCCCCCEEECcCCeeCCcCCHHHhCCCC
Confidence 578899998887752 1123 444 8899999999995 7776 88999999999999999999998 88999999999
Q ss_pred CcEEecCCcccc-ccchhhhccccCceeecCCcccCCCCCCCCCCCC-CCCeeecCCC-C-ccCchhcCCCCCCCeEEEe
Q 010381 259 LQTLQMPSSYID-QSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK-NLIFVSALHP-I-SCTPDILGRLPNIQTLRIS 334 (512)
Q Consensus 259 L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~-~L~~l~l~~~-~-~~~~~~l~~l~~L~~L~l~ 334 (512)
|++|++++|.+. .+|..+..+++|++|++++|.+.+.+|..+++++ +|+.++++++ + +..+..++.++ |+.|+++
T Consensus 127 L~~L~Ls~N~l~~~~p~~~~~l~~L~~L~L~~N~l~~~~p~~l~~l~~~L~~L~L~~N~l~~~~~~~~~~l~-L~~L~Ls 205 (313)
T 1ogq_A 127 LVTLDFSYNALSGTLPPSISSLPNLVGITFDGNRISGAIPDSYGSFSKLFTSMTISRNRLTGKIPPTFANLN-LAFVDLS 205 (313)
T ss_dssp CCEEECCSSEEESCCCGGGGGCTTCCEEECCSSCCEEECCGGGGCCCTTCCEEECCSSEEEEECCGGGGGCC-CSEEECC
T ss_pred CCEEeCCCCccCCcCChHHhcCCCCCeEECcCCcccCcCCHHHhhhhhcCcEEECcCCeeeccCChHHhCCc-ccEEECc
Confidence 999999999876 7888899999999999999999888999999998 8999999862 1 35677788887 9999999
Q ss_pred ccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEccccc
Q 010381 335 GDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYL 414 (512)
Q Consensus 335 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (512)
++ ......+..+..+++|+.|++++|.+...-. .+..+ ++|++|++++|.+++..|..++.+++|++|++++|.+.
T Consensus 206 ~N--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~-~~~~l-~~L~~L~Ls~N~l~~~~p~~l~~l~~L~~L~Ls~N~l~ 281 (313)
T 1ogq_A 206 RN--MLEGDASVLFGSDKNTQKIHLAKNSLAFDLG-KVGLS-KNLNGLDLRNNRIYGTLPQGLTQLKFLHSLNVSFNNLC 281 (313)
T ss_dssp SS--EEEECCGGGCCTTSCCSEEECCSSEECCBGG-GCCCC-TTCCEEECCSSCCEECCCGGGGGCTTCCEEECCSSEEE
T ss_pred CC--cccCcCCHHHhcCCCCCEEECCCCceeeecC-ccccc-CCCCEEECcCCcccCcCChHHhcCcCCCEEECcCCccc
Confidence 99 4666678889999999999999986642110 34567 99999999999998888989999999999999999998
Q ss_pred CceeeeeCCCCCccccEEEecCCCCcce
Q 010381 415 GRKLACVGSGGFPELKVLHLKSMYWLDE 442 (512)
Q Consensus 415 ~~~~~~~~~~~~~~L~~L~L~~~~~l~~ 442 (512)
+..+. ...+++|+.|++.+++.+..
T Consensus 282 ~~ip~---~~~l~~L~~l~l~~N~~lc~ 306 (313)
T 1ogq_A 282 GEIPQ---GGNLQRFDVSAYANNKCLCG 306 (313)
T ss_dssp EECCC---STTGGGSCGGGTCSSSEEES
T ss_pred ccCCC---CccccccChHHhcCCCCccC
Confidence 76655 47899999999999775544
No 45
>4fcg_A Uncharacterized protein; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, LRR, N- and C-terminal helices; 2.00A {Xanthomonas campestris PV}
Probab=99.90 E-value=8.5e-24 Score=206.23 Aligned_cols=219 Identities=17% Similarity=0.192 Sum_probs=139.8
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.++++.|.+.++.+. .+ ..+ .++++|++|++++|.++.+|..++++++|++|++++|.++.+|..++++++|+
T Consensus 80 ~~~l~~L~L~~n~l~-----~lp~~l-~~l~~L~~L~L~~n~l~~lp~~~~~l~~L~~L~Ls~n~l~~lp~~l~~l~~L~ 153 (328)
T 4fcg_A 80 QPGRVALELRSVPLP-----QFPDQA-FRLSHLQHMTIDAAGLMELPDTMQQFAGLETLTLARNPLRALPASIASLNRLR 153 (328)
T ss_dssp STTCCEEEEESSCCS-----SCCSCG-GGGTTCSEEEEESSCCCCCCSCGGGGTTCSEEEEESCCCCCCCGGGGGCTTCC
T ss_pred ccceeEEEccCCCch-----hcChhh-hhCCCCCEEECCCCCccchhHHHhccCCCCEEECCCCccccCcHHHhcCcCCC
Confidence 356677777776664 34 444 56888888888888888888888888888888888888888888888888888
Q ss_pred EEecCCc-cccccchhhhc---------cccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCC
Q 010381 261 TLQMPSS-YIDQSPEDIWM---------MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQ 329 (512)
Q Consensus 261 ~L~L~~~-~~~~lp~~i~~---------l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~ 329 (512)
+|++++| .++.+|..++. +++|++|++++|.+. .+|..++++++|+.|++++ .+...+..++.+++|+
T Consensus 154 ~L~L~~n~~~~~~p~~~~~~~~~~~~~~l~~L~~L~L~~n~l~-~lp~~l~~l~~L~~L~L~~N~l~~l~~~l~~l~~L~ 232 (328)
T 4fcg_A 154 ELSIRACPELTELPEPLASTDASGEHQGLVNLQSLRLEWTGIR-SLPASIANLQNLKSLKIRNSPLSALGPAIHHLPKLE 232 (328)
T ss_dssp EEEEEEETTCCCCCSCSEEEC-CCCEEESTTCCEEEEEEECCC-CCCGGGGGCTTCCEEEEESSCCCCCCGGGGGCTTCC
T ss_pred EEECCCCCCccccChhHhhccchhhhccCCCCCEEECcCCCcC-cchHhhcCCCCCCEEEccCCCCCcCchhhccCCCCC
Confidence 8888887 55777766654 778888888887764 4555455555554444443 2233333444444444
Q ss_pred eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEE
Q 010381 330 TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLK 409 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~ 409 (512)
.|++++| .....+ |. ++..+ ++|++|++++|.+.+..|..++++++|++|+++
T Consensus 233 ~L~Ls~n--~~~~~~--------------------p~----~~~~l-~~L~~L~L~~n~~~~~~p~~~~~l~~L~~L~L~ 285 (328)
T 4fcg_A 233 ELDLRGC--TALRNY--------------------PP----IFGGR-APLKRLILKDCSNLLTLPLDIHRLTQLEKLDLR 285 (328)
T ss_dssp EEECTTC--TTCCBC--------------------CC----CTTCC-CCCCEEECTTCTTCCBCCTTGGGCTTCCEEECT
T ss_pred EEECcCC--cchhhh--------------------HH----HhcCC-CCCCEEECCCCCchhhcchhhhcCCCCCEEeCC
Confidence 4444444 222222 33 44555 566666666665555555556666666666666
Q ss_pred cccccCceeeeeCCCCCccccEEEecC
Q 010381 410 QNSYLGRKLACVGSGGFPELKVLHLKS 436 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~~~L~~L~L~~ 436 (512)
+|.+.+..+.. ++.+++|+.+.+..
T Consensus 286 ~n~~~~~iP~~--l~~L~~L~~l~l~~ 310 (328)
T 4fcg_A 286 GCVNLSRLPSL--IAQLPANCIILVPP 310 (328)
T ss_dssp TCTTCCCCCGG--GGGSCTTCEEECCG
T ss_pred CCCchhhccHH--HhhccCceEEeCCH
Confidence 66655555443 45566666665554
No 46
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.90 E-value=1.1e-22 Score=207.01 Aligned_cols=287 Identities=20% Similarity=0.235 Sum_probs=164.0
Q ss_pred CCCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 159 PMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
.+..++.+.+..+....++. ..++|+.|.+++|.+.. ++.+ .++|++|++++|.++.+| .++.+++|++
T Consensus 89 ~~~~L~~L~l~~n~l~~lp~--~~~~L~~L~l~~n~l~~-----l~~~---~~~L~~L~L~~n~l~~lp-~~~~l~~L~~ 157 (454)
T 1jl5_A 89 LPPHLESLVASCNSLTELPE--LPQSLKSLLVDNNNLKA-----LSDL---PPLLEYLGVSNNQLEKLP-ELQNSSFLKI 157 (454)
T ss_dssp CCTTCSEEECCSSCCSSCCC--CCTTCCEEECCSSCCSC-----CCSC---CTTCCEEECCSSCCSSCC-CCTTCTTCCE
T ss_pred CcCCCCEEEccCCcCCcccc--ccCCCcEEECCCCccCc-----ccCC---CCCCCEEECcCCCCCCCc-ccCCCCCCCE
Confidence 34567777776555444322 34667777777665541 1111 256777777777766666 4667777777
Q ss_pred eeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 239 LKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 239 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
|++++|.++.+|..+ .+|++|++++|.+..+| .++++++|++|++++|.+.+ +|... ++|+.+++++ .+..
T Consensus 158 L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~l~-~~~~l~~L~~L~l~~N~l~~-l~~~~---~~L~~L~l~~n~l~~ 229 (454)
T 1jl5_A 158 IDVDNNSLKKLPDLP---PSLEFIAAGNNQLEELP-ELQNLPFLTAIYADNNSLKK-LPDLP---LSLESIVAGNNILEE 229 (454)
T ss_dssp EECCSSCCSCCCCCC---TTCCEEECCSSCCSSCC-CCTTCTTCCEEECCSSCCSS-CCCCC---TTCCEEECCSSCCSS
T ss_pred EECCCCcCcccCCCc---ccccEEECcCCcCCcCc-cccCCCCCCEEECCCCcCCc-CCCCc---CcccEEECcCCcCCc
Confidence 777777766666432 46777777777666666 46667777777777666643 33322 3566666654 2233
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC-------Cccc--------CcCCCCCCccEE
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS-------RMVL--------SEYQFPPSLTHL 382 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~-------L~~l--------~~~~lp~~L~~L 382 (512)
++ .++.+++|+.|+++++. ...+|. ..++|+.|++++|.+.. |+.+ .+...|++|+.|
T Consensus 230 lp-~~~~l~~L~~L~l~~N~---l~~l~~---~~~~L~~L~l~~N~l~~l~~~~~~L~~L~ls~N~l~~l~~~~~~L~~L 302 (454)
T 1jl5_A 230 LP-ELQNLPFLTTIYADNNL---LKTLPD---LPPSLEALNVRDNYLTDLPELPQSLTFLDVSENIFSGLSELPPNLYYL 302 (454)
T ss_dssp CC-CCTTCTTCCEEECCSSC---CSSCCS---CCTTCCEEECCSSCCSCCCCCCTTCCEEECCSSCCSEESCCCTTCCEE
T ss_pred cc-ccCCCCCCCEEECCCCc---CCcccc---cccccCEEECCCCcccccCcccCcCCEEECcCCccCcccCcCCcCCEE
Confidence 33 35666666666666652 111221 12456666666554322 1111 111233556666
Q ss_pred EEecccCCCCCCCCCCCC-cccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCC
Q 010381 383 SLSNTELKEDPMPTLEKL-PYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPC 461 (512)
Q Consensus 383 ~L~~~~~~~~~~~~l~~l-~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c 461 (512)
++++|.+.+ +..+ ++|++|++++|.+.+ . ...+++|++|++++| .++.+|. .+++|++|++++|
T Consensus 303 ~l~~N~l~~-----i~~~~~~L~~L~Ls~N~l~~-l-----p~~~~~L~~L~L~~N-~l~~lp~---~l~~L~~L~L~~N 367 (454)
T 1jl5_A 303 NASSNEIRS-----LCDLPPSLEELNVSNNKLIE-L-----PALPPRLERLIASFN-HLAEVPE---LPQNLKQLHVEYN 367 (454)
T ss_dssp ECCSSCCSE-----ECCCCTTCCEEECCSSCCSC-C-----CCCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSS
T ss_pred ECcCCcCCc-----ccCCcCcCCEEECCCCcccc-c-----cccCCcCCEEECCCC-ccccccc---hhhhccEEECCCC
Confidence 666665542 1223 478888888887765 2 123688999999985 5677776 5789999999999
Q ss_pred cccC--CCCcccCCC-------------CCCcEEEccCCh
Q 010381 462 AYLR--KLPEELWCI-------------QSLRKLDLHWPQ 486 (512)
Q Consensus 462 ~~l~--~lp~~~~~l-------------~~L~~L~l~~~~ 486 (512)
.... .+|..+..+ ++|+.|++++|+
T Consensus 368 ~l~~l~~ip~~l~~L~~n~~~~~i~~~~~~L~~L~ls~N~ 407 (454)
T 1jl5_A 368 PLREFPDIPESVEDLRMNSHLAEVPELPQNLKQLHVETNP 407 (454)
T ss_dssp CCSSCCCCCTTCCEEECCC---------------------
T ss_pred CCCcCCCChHHHHhhhhcccccccccccCcCCEEECCCCc
Confidence 8666 677777777 889999999887
No 47
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.89 E-value=1.9e-23 Score=206.18 Aligned_cols=269 Identities=16% Similarity=0.124 Sum_probs=157.6
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCccc-ChhhhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCL-PSQLCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~ 257 (512)
.|+........++... .+ ..+ .++|++|++++|.++.+|. .+.++++|++|++++|.++.+ |..+++++
T Consensus 29 ~C~~~~~c~~~~~~l~-----~iP~~~---~~~L~~L~l~~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~ 100 (353)
T 2z80_A 29 SCDRNGICKGSSGSLN-----SIPSGL---TEAVKSLDLSNNRITYISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLG 100 (353)
T ss_dssp EECTTSEEECCSTTCS-----SCCTTC---CTTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCT
T ss_pred CCCCCeEeeCCCCCcc-----cccccc---cccCcEEECCCCcCcccCHHHhccCCCCCEEECCCCccCccCHhhcCCCC
Confidence 4444455555555443 23 222 2478888888888876654 677888888888888888755 44577888
Q ss_pred CCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCC--CCCCCCCCCeeecCCC--CccC-chhcCCCCCCCeE
Q 010381 258 NLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTN--YSSSLKNLIFVSALHP--ISCT-PDILGRLPNIQTL 331 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~--~~~~l~~L~~l~l~~~--~~~~-~~~l~~l~~L~~L 331 (512)
+|++|++++|.++.+|.. +.++++|++|++++|.+. .+|. .+.++++|+.|+++++ +... +..++.+++|++|
T Consensus 101 ~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~L~~n~l~-~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L 179 (353)
T 2z80_A 101 SLEHLDLSYNYLSNLSSSWFKPLSSLTFLNLLGNPYK-TLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEEL 179 (353)
T ss_dssp TCCEEECCSSCCSSCCHHHHTTCTTCSEEECTTCCCS-SSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEE
T ss_pred CCCEEECCCCcCCcCCHhHhCCCccCCEEECCCCCCc-ccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEE
Confidence 888888888877777765 677888888888888775 3333 4555555555555431 1111 2334444455555
Q ss_pred EEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcc
Q 010381 332 RISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411 (512)
Q Consensus 332 ~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 411 (512)
+++++ ......| . .+..+ ++|++|++++|.+.......+..+++|++|++++|
T Consensus 180 ~l~~n--~l~~~~~--------------------~----~l~~l-~~L~~L~l~~n~l~~~~~~~~~~~~~L~~L~L~~n 232 (353)
T 2z80_A 180 EIDAS--DLQSYEP--------------------K----SLKSI-QNVSHLILHMKQHILLLEIFVDVTSSVECLELRDT 232 (353)
T ss_dssp EEEET--TCCEECT--------------------T----TTTTC-SEEEEEEEECSCSTTHHHHHHHHTTTEEEEEEESC
T ss_pred ECCCC--CcCccCH--------------------H----HHhcc-ccCCeecCCCCccccchhhhhhhcccccEEECCCC
Confidence 55444 1222222 2 44555 66666666666653322222334566666666666
Q ss_pred cccCceeeee-CCCCCccccEEEecCCCCcc----eeeeCCCCccccceeeecCCcccCCCCccc-CCCCCCcEEEccCC
Q 010381 412 SYLGRKLACV-GSGGFPELKVLHLKSMYWLD----EWTMGAGAMPKLESLIVDPCAYLRKLPEEL-WCIQSLRKLDLHWP 485 (512)
Q Consensus 412 ~~~~~~~~~~-~~~~~~~L~~L~L~~~~~l~----~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~ 485 (512)
.+.+..+... .....+.++.++++++.... .+|..+..+++|+.|++++|. ++.+|..+ ..+++|++|++++|
T Consensus 233 ~l~~~~~~~l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~l~~l~~L~~L~Ls~N~-l~~i~~~~~~~l~~L~~L~L~~N 311 (353)
T 2z80_A 233 DLDTFHFSELSTGETNSLIKKFTFRNVKITDESLFQVMKLLNQISGLLELEFSRNQ-LKSVPDGIFDRLTSLQKIWLHTN 311 (353)
T ss_dssp BCTTCCCC------CCCCCCEEEEESCBCCHHHHHHHHHHHHTCTTCCEEECCSSC-CCCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccccccccccccccchhhccccccccccCcchhhhHHHHhcccCCCEEECCCCC-CCccCHHHHhcCCCCCEEEeeCC
Confidence 6554322110 01234556666666643211 345556677788888888776 45666654 67788888888777
Q ss_pred h
Q 010381 486 Q 486 (512)
Q Consensus 486 ~ 486 (512)
+
T Consensus 312 ~ 312 (353)
T 2z80_A 312 P 312 (353)
T ss_dssp C
T ss_pred C
Confidence 4
No 48
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.89 E-value=5e-23 Score=199.03 Aligned_cols=239 Identities=18% Similarity=0.141 Sum_probs=128.4
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCcccccc---chhhhccccCceeecCCc
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQS---PEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~l---p~~i~~l~~L~~L~l~~~ 290 (512)
.++.+++.++.+|..+. ++|++|++++|.++.+|.. ++++++|++|++++|.+..+ |..+..+++|++|++++|
T Consensus 11 ~l~c~~~~l~~ip~~~~--~~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n 88 (306)
T 2z66_A 11 EIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFN 88 (306)
T ss_dssp EEECCSSCCSSCCSCCC--TTCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSC
T ss_pred EEEcCCCCcccCCCCCC--CCCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCC
Confidence 44555555555554332 4566666666666555543 45556666666666555433 344555566666666655
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CCccCc--hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PISCTP--DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~--~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
.+. .+|..+..+++|+.|++++ .+...+ ..+..+++|+.|+++++ ......+.
T Consensus 89 ~i~-~l~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~--------------------- 144 (306)
T 2z66_A 89 GVI-TMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHT--HTRVAFNG--------------------- 144 (306)
T ss_dssp SEE-EEEEEEETCTTCCEEECTTSEEESSTTTTTTTTCTTCCEEECTTS--CCEECSTT---------------------
T ss_pred ccc-cChhhcCCCCCCCEEECCCCcccccccchhhhhccCCCEEECCCC--cCCccchh---------------------
Confidence 543 2333333333333333332 001111 23455555666665555 12222222
Q ss_pred cccCcCCCCCCccEEEEecccCCC-CCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-e
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKE-DPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-M 445 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~ 445 (512)
.+..+ ++|++|++++|.+.+ ..+..+..+++|++|++++|.+.+..+.. +..+++|++|++++| .++.++ .
T Consensus 145 ---~~~~l-~~L~~L~l~~n~l~~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~ 217 (306)
T 2z66_A 145 ---IFNGL-SSLEVLKMAGNSFQENFLPDIFTELRNLTFLDLSQCQLEQLSPTA--FNSLSSLQVLNMSHN-NFFSLDTF 217 (306)
T ss_dssp ---TTTTC-TTCCEEECTTCEEGGGEECSCCTTCTTCCEEECTTSCCCEECTTT--TTTCTTCCEEECTTS-CCSBCCSG
T ss_pred ---hcccC-cCCCEEECCCCccccccchhHHhhCcCCCEEECCCCCcCCcCHHH--hcCCCCCCEEECCCC-ccCccChh
Confidence 34455 666666666666543 34555666667777777766655433222 456667777777764 344443 2
Q ss_pred CCCCccccceeeecCCcccCCCCcccCCCC-CCcEEEccCCh
Q 010381 446 GAGAMPKLESLIVDPCAYLRKLPEELWCIQ-SLRKLDLHWPQ 486 (512)
Q Consensus 446 ~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~ 486 (512)
.+..+++|+.|++++|......|..+..++ +|++|++++|+
T Consensus 218 ~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 218 PYKCLNSLQVLDYSLNHIMTSKKQELQHFPSSLAFLNLTQND 259 (306)
T ss_dssp GGTTCTTCCEEECTTSCCCBCSSSSCCCCCTTCCEEECTTCC
T ss_pred hccCcccCCEeECCCCCCcccCHHHHHhhhccCCEEEccCCC
Confidence 456677777777777765555666666663 77777777764
No 49
>4g8a_A TOLL-like receptor 4; leucine rich repeat MD-2 related lipid recognition, receptor immunity, lipid binding, glycosylation, immune system; HET: NAG LP4 LP5 DAO MYR KDO; 2.40A {Homo sapiens} PDB: 3fxi_A*
Probab=99.88 E-value=4.3e-22 Score=212.12 Aligned_cols=294 Identities=17% Similarity=0.169 Sum_probs=200.1
Q ss_pred CCCCCceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccC
Q 010381 157 EEPMANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLEN 232 (512)
Q Consensus 157 ~~~~~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~ 232 (512)
......+++|.++.+.+..+++.. .+++|++|++++|.+. .+ +..|.++++|++|++++|.++.+|. .|++
T Consensus 72 f~~l~~L~~L~Ls~N~i~~i~~~~f~~L~~L~~L~Ls~N~l~-----~l~~~~f~~L~~L~~L~Ls~N~l~~l~~~~~~~ 146 (635)
T 4g8a_A 72 FFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ-----SLALGAFSGLSSLQKLVAVETNLASLENFPIGH 146 (635)
T ss_dssp TTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC-----EECGGGGTTCTTCCEEECTTSCCCCSTTCCCTT
T ss_pred HhCCCCCCEEECCCCcCCCcChhHhcCCCCCCEEEccCCcCC-----CCCHHHhcCCCCCCEEECCCCcCCCCChhhhhc
Confidence 345578999999977777777765 8999999999999876 44 4555999999999999999997775 5899
Q ss_pred ccccCeeeecCCCCc--ccChhhhcCcCCcEEecCCccccccc-hhhhcccc----------------------------
Q 010381 233 LFLLKYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQK---------------------------- 281 (512)
Q Consensus 233 l~~L~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~---------------------------- 281 (512)
+++|++|++++|.++ .+|..++.+++|++|++++|.+..++ ..+..+.+
T Consensus 147 L~~L~~L~Ls~N~l~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~l~~L~~l~~~~~~~~ls~n~l~~i~~~~~~~~~~ 226 (635)
T 4g8a_A 147 LKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTDLRVLHQMPLLNLSLDLSLNPMNFIQPGAFKEIRL 226 (635)
T ss_dssp CTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGGGHHHHTCTTCCCEEECTTCCCCEECTTTTTTCEE
T ss_pred CcccCeeccccCccccCCCchhhccchhhhhhcccCccccccccccccchhhhhhhhhhhhcccCcccccCcccccchhh
Confidence 999999999999987 56788999999999999998775543 22222221
Q ss_pred --------------------------------------------------------------------------------
Q 010381 282 -------------------------------------------------------------------------------- 281 (512)
Q Consensus 282 -------------------------------------------------------------------------------- 281 (512)
T Consensus 227 ~~l~l~~n~~~~~~~~~~~~~l~~l~~~~l~~~~~~~~~~l~~~~~~~~~~~~~l~~~~l~~~~~~~~~~~~~~~~~~~~ 306 (635)
T 4g8a_A 227 HKLTLRNNFDSLNVMKTCIQGLAGLEVHRLVLGEFRNEGNLEKFDKSALEGLCNLTIEEFRLAYLDYYLDGIIDLFNCLT 306 (635)
T ss_dssp EEEEEESCCSSHHHHHHHHHTTTTCEEEEEEEECCTTSCCCSCCCTTTTGGGGGSEEEEEEEECCCSCEEECTTTTGGGT
T ss_pred hhhhhhcccccccccchhhcCCcccccccccccccccccccccccccccccccchhhhhhhhhhhcccccchhhhhhhhc
Confidence
Q ss_pred -----------------------CceeecCCcccCCCC-------------------CCCCCCCCCCCeeecCCC-C---
Q 010381 282 -----------------------LMHLNFGSITLPAPP-------------------TNYSSSLKNLIFVSALHP-I--- 315 (512)
Q Consensus 282 -----------------------L~~L~l~~~~~~~~~-------------------p~~~~~l~~L~~l~l~~~-~--- 315 (512)
|+.|++.+|.+.... +.....+++|+.+++++. +
T Consensus 307 ~l~~l~~~~~~~~~~~~~~~~~~L~~L~l~~~~~~~~~~~~l~~L~~l~l~~n~~~~~~~~~~l~~L~~L~ls~n~l~~~ 386 (635)
T 4g8a_A 307 NVSSFSLVSVTIERVKDFSYNFGWQHLELVNCKFGQFPTLKLKSLKRLTFTSNKGGNAFSEVDLPSLEFLDLSRNGLSFK 386 (635)
T ss_dssp TCSEEEEESCEEEECGGGGSCCCCSEEEEESCEESSCCCCBCTTCCEEEEESCCSCCBCCCCBCTTCCEEECCSSCCBEE
T ss_pred ccccccccccccccccccccchhhhhhhcccccccCcCcccchhhhhcccccccCCCCcccccccccccchhhccccccc
Confidence 112222222111100 011123556666666531 0
Q ss_pred ccCchh-----------------------cCCCCCCCeEEEeccch-----------------------hhhhhHHHhcc
Q 010381 316 SCTPDI-----------------------LGRLPNIQTLRISGDLS-----------------------YYQSRVSKSLC 349 (512)
Q Consensus 316 ~~~~~~-----------------------l~~l~~L~~L~l~~~~~-----------------------~~~~~l~~~l~ 349 (512)
...+.. +..+++|+.+++..+.. ......+..+.
T Consensus 387 ~~~~~~~~~~~~L~~L~~~~~~~~~~~~~~~~l~~L~~l~l~~~~~~~~~~~~~~~~l~~l~~l~ls~n~l~~~~~~~~~ 466 (635)
T 4g8a_A 387 GCCSQSDFGTISLKYLDLSFNGVITMSSNFLGLEQLEHLDFQHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFN 466 (635)
T ss_dssp EECCHHHHSCSCCCEEECCSCSEEEECSCCTTCTTCCEEECTTSEEESTTSSCTTTTCTTCCEEECTTSCCEECCTTTTT
T ss_pred cccccchhhhhhhhhhhccccccccccccccccccccchhhhhccccccccccccccccccccccccccccccccccccc
Confidence 111111 22333444444433210 11111223334
Q ss_pred CCCCCcEEEeccCC-----CCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCC
Q 010381 350 KLQKLEWLKLVNES-----KPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSG 424 (512)
Q Consensus 350 ~l~~L~~L~l~~~~-----~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~ 424 (512)
.++.|+.|++++|. .|. .+..+ ++|+.|+|++|.+++..+..|+++++|++|+|++|.+.+..+.. +.
T Consensus 467 ~~~~L~~L~Ls~N~~~~~~~~~----~~~~l-~~L~~L~Ls~N~L~~l~~~~f~~l~~L~~L~Ls~N~l~~l~~~~--~~ 539 (635)
T 4g8a_A 467 GLSSLEVLKMAGNSFQENFLPD----IFTEL-RNLTFLDLSQCQLEQLSPTAFNSLSSLQVLNMSHNNFFSLDTFP--YK 539 (635)
T ss_dssp TCTTCCEEECTTCEEGGGEECS----CCTTC-TTCCEEECTTSCCCEECTTTTTTCTTCCEEECTTSCCCBCCCGG--GT
T ss_pred cchhhhhhhhhhcccccccCch----hhhhc-cccCEEECCCCccCCcChHHHcCCCCCCEEECCCCcCCCCChhH--Hh
Confidence 45555556655542 233 56778 99999999999999888889999999999999999987655443 68
Q ss_pred CCccccEEEecCCCCccee-eeCCCCc-cccceeeecCCcc
Q 010381 425 GFPELKVLHLKSMYWLDEW-TMGAGAM-PKLESLIVDPCAY 463 (512)
Q Consensus 425 ~~~~L~~L~L~~~~~l~~l-~~~~~~l-~~L~~L~l~~c~~ 463 (512)
++++|++|+|++| .++.+ |..+..+ ++|+.|++++|+.
T Consensus 540 ~l~~L~~L~Ls~N-~l~~~~~~~l~~l~~~L~~L~L~~Np~ 579 (635)
T 4g8a_A 540 CLNSLQVLDYSLN-HIMTSKKQELQHFPSSLAFLNLTQNDF 579 (635)
T ss_dssp TCTTCCEEECTTS-CCCBCCSSCTTCCCTTCCEEECTTCCB
T ss_pred CCCCCCEEECCCC-cCCCCCHHHHHhhhCcCCEEEeeCCCC
Confidence 8999999999995 45544 5667777 6899999999984
No 50
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.88 E-value=1.9e-21 Score=204.16 Aligned_cols=255 Identities=18% Similarity=0.065 Sum_probs=149.0
Q ss_pred ceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeee
Q 010381 162 NVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL 241 (512)
Q Consensus 162 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l 241 (512)
.++.+.+..+....++... .++|+.|.+.+|.+. .++ ..+++|++|++++|.++.+|. .+++|++|++
T Consensus 41 ~l~~L~ls~n~L~~lp~~l-~~~L~~L~L~~N~l~-----~lp---~~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~L 108 (622)
T 3g06_A 41 GNAVLNVGESGLTTLPDCL-PAHITTLVIPDNNLT-----SLP---ALPPELRTLEVSGNQLTSLPV---LPPGLLELSI 108 (622)
T ss_dssp CCCEEECCSSCCSCCCSCC-CTTCSEEEECSCCCS-----CCC---CCCTTCCEEEECSCCCSCCCC---CCTTCCEEEE
T ss_pred CCcEEEecCCCcCccChhh-CCCCcEEEecCCCCC-----CCC---CcCCCCCEEEcCCCcCCcCCC---CCCCCCEEEC
Confidence 3566777655555433322 367777777777664 222 246677777777777776665 5577777777
Q ss_pred cCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchh
Q 010381 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDI 321 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~ 321 (512)
++|.++.+|. .+++|++|++++|.++.+|.. +++|++|++++|.+.+ +|.. +.+|+.|++
T Consensus 109 s~N~l~~l~~---~l~~L~~L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~-l~~~---~~~L~~L~L---------- 168 (622)
T 3g06_A 109 FSNPLTHLPA---LPSGLCKLWIFGNQLTSLPVL---PPGLQELSVSDNQLAS-LPAL---PSELCKLWA---------- 168 (622)
T ss_dssp CSCCCCCCCC---CCTTCCEEECCSSCCSCCCCC---CTTCCEEECCSSCCSC-CCCC---CTTCCEEEC----------
T ss_pred cCCcCCCCCC---CCCCcCEEECCCCCCCcCCCC---CCCCCEEECcCCcCCC-cCCc---cCCCCEEEC----------
Confidence 7777777765 456777777777777777653 3677777777776642 3322 233444444
Q ss_pred cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 322 LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 322 l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
++| ....+| ..+++|+.|++++|.+..+. ..+ ++|+.|++++|.++. .+. .++
T Consensus 169 ------------~~N---~l~~l~---~~~~~L~~L~Ls~N~l~~l~----~~~-~~L~~L~L~~N~l~~-l~~---~~~ 221 (622)
T 3g06_A 169 ------------YNN---QLTSLP---MLPSGLQELSVSDNQLASLP----TLP-SELYKLWAYNNRLTS-LPA---LPS 221 (622)
T ss_dssp ------------CSS---CCSCCC---CCCTTCCEEECCSSCCSCCC----CCC-TTCCEEECCSSCCSS-CCC---CCT
T ss_pred ------------CCC---CCCCCc---ccCCCCcEEECCCCCCCCCC----Ccc-chhhEEECcCCcccc-cCC---CCC
Confidence 443 111122 23455555555555543311 122 566666666666543 221 235
Q ss_pred ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEE
Q 010381 402 YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLD 481 (512)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~ 481 (512)
+|+.|++++|.+.+.. ..+++|+.|++++| .++.+|. .+++|+.|++++|. ++.+|..+..+++|+.|+
T Consensus 222 ~L~~L~Ls~N~L~~lp------~~l~~L~~L~Ls~N-~L~~lp~---~~~~L~~L~Ls~N~-L~~lp~~l~~l~~L~~L~ 290 (622)
T 3g06_A 222 GLKELIVSGNRLTSLP------VLPSELKELMVSGN-RLTSLPM---LPSGLLSLSVYRNQ-LTRLPESLIHLSSETTVN 290 (622)
T ss_dssp TCCEEECCSSCCSCCC------CCCTTCCEEECCSS-CCSCCCC---CCTTCCEEECCSSC-CCSCCGGGGGSCTTCEEE
T ss_pred CCCEEEccCCccCcCC------CCCCcCcEEECCCC-CCCcCCc---ccccCcEEeCCCCC-CCcCCHHHhhccccCEEE
Confidence 6666666666654411 23466666666663 4555554 45666666666665 446666666666677776
Q ss_pred ccCCh
Q 010381 482 LHWPQ 486 (512)
Q Consensus 482 l~~~~ 486 (512)
+++|+
T Consensus 291 L~~N~ 295 (622)
T 3g06_A 291 LEGNP 295 (622)
T ss_dssp CCSCC
T ss_pred ecCCC
Confidence 66664
No 51
>2z66_A Variable lymphocyte receptor B, TOLL-like recepto; TLR4, TOLL-like receptor, MD-2, LPS, leucine-rich repeat, glycoprotein, immune response; HET: NAG BMA FUL; 1.90A {Eptatretus burgeri}
Probab=99.87 E-value=1.6e-22 Score=195.46 Aligned_cols=222 Identities=22% Similarity=0.258 Sum_probs=119.8
Q ss_pred eeEEEEecCCcCCccCcc-ccCccccCeeeecCCCCccc---ChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 212 YLRVLDLGSAVLDQFPPG-LENLFLLKYLKLNIPSLKCL---PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~-l~~l~~L~~L~l~~~~i~~l---p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
+|++|++++|.++.+|.. ++++++|++|++++|.++.+ |..+..+++|++|++++|.+..+|..+..+++|++|++
T Consensus 29 ~l~~L~L~~n~l~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~l~~~~~~l~~L~~L~l 108 (306)
T 2z66_A 29 SATRLELESNKLQSLPHGVFDKLTQLTKLSLSSNGLSFKGCCSQSDFGTTSLKYLDLSFNGVITMSSNFLGLEQLEHLDF 108 (306)
T ss_dssp TCCEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCEEEEEEHHHHSCSCCCEEECCSCSEEEEEEEEETCTTCCEEEC
T ss_pred CCCEEECCCCccCccCHhHhhccccCCEEECCCCccCcccCcccccccccccCEEECCCCccccChhhcCCCCCCCEEEC
Confidence 445555555555444432 34455555555555544422 34444455555555555544444444445555555555
Q ss_pred CCcccCCCCC-CCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEeccchhhhh-hHHHhccCCCCCcEEEeccCC
Q 010381 288 GSITLPAPPT-NYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGDLSYYQS-RVSKSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 288 ~~~~~~~~~p-~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~~~~~~~-~l~~~l~~l~~L~~L~l~~~~ 363 (512)
++|.+.+..+ ..+.++++|+.|++++ .+ ...+..+..+++|++|+++++ .... ..|..+..+++|+.|++++|.
T Consensus 109 ~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n--~l~~~~~~~~~~~l~~L~~L~Ls~n~ 186 (306)
T 2z66_A 109 QHSNLKQMSEFSVFLSLRNLIYLDISHTHTRVAFNGIFNGLSSLEVLKMAGN--SFQENFLPDIFTELRNLTFLDLSQCQ 186 (306)
T ss_dssp TTSEEESSTTTTTTTTCTTCCEEECTTSCCEECSTTTTTTCTTCCEEECTTC--EEGGGEECSCCTTCTTCCEEECTTSC
T ss_pred CCCcccccccchhhhhccCCCEEECCCCcCCccchhhcccCcCCCEEECCCC--ccccccchhHHhhCcCCCEEECCCCC
Confidence 5554433222 3444555555555543 11 122334455566666666655 2222 244556666666677766665
Q ss_pred CCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCc-cccEEEecCCC
Q 010381 364 KPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFP-ELKVLHLKSMY 438 (512)
Q Consensus 364 ~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~-~L~~L~L~~~~ 438 (512)
+..+..-.+..+ ++|++|++++|.+++..+..+..+++|++|++++|.+.+..+.. +..++ +|++|++++|+
T Consensus 187 l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~~~~~L~~L~L~~N~ 259 (306)
T 2z66_A 187 LEQLSPTAFNSL-SSLQVLNMSHNNFFSLDTFPYKCLNSLQVLDYSLNHIMTSKKQE--LQHFPSSLAFLNLTQND 259 (306)
T ss_dssp CCEECTTTTTTC-TTCCEEECTTSCCSBCCSGGGTTCTTCCEEECTTSCCCBCSSSS--CCCCCTTCCEEECTTCC
T ss_pred cCCcCHHHhcCC-CCCCEEECCCCccCccChhhccCcccCCEeECCCCCCcccCHHH--HHhhhccCCEEEccCCC
Confidence 422100055666 77777777777776655556777777888888877776654433 45553 78888887753
No 52
>1jl5_A Outer protein YOPM; leucine-rich repeat, molecular pathogenesis, effector protein, virulence factor, toxin; 2.10A {Yersinia pestis} SCOP: c.10.2.6 PDB: 1g9u_A
Probab=99.87 E-value=2.6e-21 Score=196.94 Aligned_cols=282 Identities=19% Similarity=0.203 Sum_probs=204.2
Q ss_pred ceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeee
Q 010381 162 NVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKL 241 (512)
Q Consensus 162 ~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l 241 (512)
.++++.+..+....++. ..++|+.|.+.++.+.. ++ ..+++|++|++++|.++.+|... ++|++|++
T Consensus 72 ~l~~L~l~~~~l~~lp~--~~~~L~~L~l~~n~l~~-----lp---~~~~~L~~L~l~~n~l~~l~~~~---~~L~~L~L 138 (454)
T 1jl5_A 72 QAHELELNNLGLSSLPE--LPPHLESLVASCNSLTE-----LP---ELPQSLKSLLVDNNNLKALSDLP---PLLEYLGV 138 (454)
T ss_dssp TCSEEECTTSCCSCCCS--CCTTCSEEECCSSCCSS-----CC---CCCTTCCEEECCSSCCSCCCSCC---TTCCEEEC
T ss_pred CCCEEEecCCccccCCC--CcCCCCEEEccCCcCCc-----cc---cccCCCcEEECCCCccCcccCCC---CCCCEEEC
Confidence 45677777555544333 35789999999998762 22 33588999999999998776532 68999999
Q ss_pred cCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCch
Q 010381 242 NIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPD 320 (512)
Q Consensus 242 ~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~ 320 (512)
++|.++.+| .++++++|++|++++|.++.+|..+ .+|++|++++|.+.+ +| .++++++|+.+++++ .+...+.
T Consensus 139 ~~n~l~~lp-~~~~l~~L~~L~l~~N~l~~lp~~~---~~L~~L~L~~n~l~~-l~-~~~~l~~L~~L~l~~N~l~~l~~ 212 (454)
T 1jl5_A 139 SNNQLEKLP-ELQNSSFLKIIDVDNNSLKKLPDLP---PSLEFIAAGNNQLEE-LP-ELQNLPFLTAIYADNNSLKKLPD 212 (454)
T ss_dssp CSSCCSSCC-CCTTCTTCCEEECCSSCCSCCCCCC---TTCCEEECCSSCCSS-CC-CCTTCTTCCEEECCSSCCSSCCC
T ss_pred cCCCCCCCc-ccCCCCCCCEEECCCCcCcccCCCc---ccccEEECcCCcCCc-Cc-cccCCCCCCEEECCCCcCCcCCC
Confidence 999999998 6999999999999999998888644 599999999999875 66 699999999999986 3233332
Q ss_pred hcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCC
Q 010381 321 ILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKL 400 (512)
Q Consensus 321 ~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l 400 (512)
. .++|+.|++++|. . ..+| .+..+++|+.|++++|.+..+ ...+++|+.|++++|.+.+ .+.. +
T Consensus 213 ~---~~~L~~L~l~~n~--l-~~lp-~~~~l~~L~~L~l~~N~l~~l-----~~~~~~L~~L~l~~N~l~~-l~~~---~ 276 (454)
T 1jl5_A 213 L---PLSLESIVAGNNI--L-EELP-ELQNLPFLTTIYADNNLLKTL-----PDLPPSLEALNVRDNYLTD-LPEL---P 276 (454)
T ss_dssp C---CTTCCEEECCSSC--C-SSCC-CCTTCTTCCEEECCSSCCSSC-----CSCCTTCCEEECCSSCCSC-CCCC---C
T ss_pred C---cCcccEEECcCCc--C-Cccc-ccCCCCCCCEEECCCCcCCcc-----cccccccCEEECCCCcccc-cCcc---c
Confidence 2 3589999999983 3 3566 488999999999999876432 1122677777777776654 2222 2
Q ss_pred cccceeEEEcccccCc--eeee------e-----CCCCC-ccccEEEecCCCCcceeeeCCCCccccceeeecCCcccCC
Q 010381 401 PYVQVLKLKQNSYLGR--KLAC------V-----GSGGF-PELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRK 466 (512)
Q Consensus 401 ~~L~~L~l~~~~~~~~--~~~~------~-----~~~~~-~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~ 466 (512)
++|++|++++|.+.+. .+.. . ++..+ ++|++|++++| .++.+|.. +++|+.|++++|. ++.
T Consensus 277 ~~L~~L~ls~N~l~~l~~~~~~L~~L~l~~N~l~~i~~~~~~L~~L~Ls~N-~l~~lp~~---~~~L~~L~L~~N~-l~~ 351 (454)
T 1jl5_A 277 QSLTFLDVSENIFSGLSELPPNLYYLNASSNEIRSLCDLPPSLEELNVSNN-KLIELPAL---PPRLERLIASFNH-LAE 351 (454)
T ss_dssp TTCCEEECCSSCCSEESCCCTTCCEEECCSSCCSEECCCCTTCCEEECCSS-CCSCCCCC---CTTCCEEECCSSC-CSC
T ss_pred CcCCEEECcCCccCcccCcCCcCCEEECcCCcCCcccCCcCcCCEEECCCC-cccccccc---CCcCCEEECCCCc-ccc
Confidence 4555555555554431 0000 0 01123 47888888884 56666643 6899999999986 567
Q ss_pred CCcccCCCCCCcEEEccCCh
Q 010381 467 LPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 467 lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|. .+++|++|++++|+
T Consensus 352 lp~---~l~~L~~L~L~~N~ 368 (454)
T 1jl5_A 352 VPE---LPQNLKQLHVEYNP 368 (454)
T ss_dssp CCC---CCTTCCEEECCSSC
T ss_pred ccc---hhhhccEEECCCCC
Confidence 887 47899999999986
No 53
>2z80_A TOLL-like receptor 2, variable lymphocyte recepto; TLR2, lipopeptide, innate immunity, glycoprotein, immune RES inflammatory response; HET: NAG; 1.80A {Homo sapiens}
Probab=99.87 E-value=2.6e-22 Score=198.05 Aligned_cols=264 Identities=15% Similarity=0.101 Sum_probs=187.2
Q ss_pred EEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecC
Q 010381 166 CFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNI 243 (512)
Q Consensus 166 l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~ 243 (512)
.....+....+|. .-.+++++|.+.++.+. .+ ...+.++++|++|++++|.++.+ |..++++++|++|++++
T Consensus 36 c~~~~~~l~~iP~-~~~~~L~~L~l~~n~i~-----~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~ 109 (353)
T 2z80_A 36 CKGSSGSLNSIPS-GLTEAVKSLDLSNNRIT-----YISNSDLQRCVNLQALVLTSNGINTIEEDSFSSLGSLEHLDLSY 109 (353)
T ss_dssp EECCSTTCSSCCT-TCCTTCCEEECTTSCCC-----EECTTTTTTCTTCCEEECTTSCCCEECTTTTTTCTTCCEEECCS
T ss_pred eeCCCCCcccccc-cccccCcEEECCCCcCc-----ccCHHHhccCCCCCEEECCCCccCccCHhhcCCCCCCCEEECCC
Confidence 3334334444433 23468999999999886 34 32349999999999999999955 56799999999999999
Q ss_pred CCCcccChh-hhcCcCCcEEecCCccccccch--hhhccccCceeecCCcc-cCCCCCCCCCCCCCCCeeecCC-CC-cc
Q 010381 244 PSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPE--DIWMMQKLMHLNFGSIT-LPAPPTNYSSSLKNLIFVSALH-PI-SC 317 (512)
Q Consensus 244 ~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~-~~~~~p~~~~~l~~L~~l~l~~-~~-~~ 317 (512)
|.++.+|.. ++++++|++|++++|.+..+|. .+.++++|++|++++|. +....+..++++++|+.+++++ .+ ..
T Consensus 110 n~l~~~~~~~~~~l~~L~~L~L~~n~l~~l~~~~~~~~l~~L~~L~l~~n~~~~~~~~~~~~~l~~L~~L~l~~n~l~~~ 189 (353)
T 2z80_A 110 NYLSNLSSSWFKPLSSLTFLNLLGNPYKTLGETSLFSHLTKLQILRVGNMDTFTKIQRKDFAGLTFLEELEIDASDLQSY 189 (353)
T ss_dssp SCCSSCCHHHHTTCTTCSEEECTTCCCSSSCSSCSCTTCTTCCEEEEEESSSCCEECTTTTTTCCEEEEEEEEETTCCEE
T ss_pred CcCCcCCHhHhCCCccCCEEECCCCCCcccCchhhhccCCCCcEEECCCCccccccCHHHccCCCCCCEEECCCCCcCcc
Confidence 999988877 8899999999999999999987 68899999999999995 5444567899999999999985 22 33
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHh-ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKS-LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPT 396 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~-l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~ 396 (512)
.+..++.+++|++|+++++. ...++.. +..+++|+.|++++|.+.. ..+..
T Consensus 190 ~~~~l~~l~~L~~L~l~~n~---l~~~~~~~~~~~~~L~~L~L~~n~l~~-------------------------~~~~~ 241 (353)
T 2z80_A 190 EPKSLKSIQNVSHLILHMKQ---HILLLEIFVDVTSSVECLELRDTDLDT-------------------------FHFSE 241 (353)
T ss_dssp CTTTTTTCSEEEEEEEECSC---STTHHHHHHHHTTTEEEEEEESCBCTT-------------------------CCCC-
T ss_pred CHHHHhccccCCeecCCCCc---cccchhhhhhhcccccEEECCCCcccc-------------------------ccccc
Confidence 46788999999999999983 3444443 3346666666666654432 21111
Q ss_pred ---CCCCcccceeEEEcccccCcee---eeeCCCCCccccEEEecCCCCcceeeeCC-CCccccceeeecCCcccC
Q 010381 397 ---LEKLPYVQVLKLKQNSYLGRKL---ACVGSGGFPELKVLHLKSMYWLDEWTMGA-GAMPKLESLIVDPCAYLR 465 (512)
Q Consensus 397 ---l~~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~L~~L~L~~~~~l~~l~~~~-~~l~~L~~L~l~~c~~l~ 465 (512)
....+.++.++++++.+.+... ... +..+++|+.|++++| .++.+|... +.+++|++|++++|+...
T Consensus 242 l~~~~~~~~l~~l~L~~~~l~~~~l~~l~~~-l~~l~~L~~L~Ls~N-~l~~i~~~~~~~l~~L~~L~L~~N~~~~ 315 (353)
T 2z80_A 242 LSTGETNSLIKKFTFRNVKITDESLFQVMKL-LNQISGLLELEFSRN-QLKSVPDGIFDRLTSLQKIWLHTNPWDC 315 (353)
T ss_dssp -----CCCCCCEEEEESCBCCHHHHHHHHHH-HHTCTTCCEEECCSS-CCCCCCTTTTTTCTTCCEEECCSSCBCC
T ss_pred cccccccchhhccccccccccCcchhhhHHH-HhcccCCCEEECCCC-CCCccCHHHHhcCCCCCEEEeeCCCccC
Confidence 1223445566666555443211 111 356677777777774 556676553 677778888887776433
No 54
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.87 E-value=1.2e-21 Score=199.32 Aligned_cols=222 Identities=18% Similarity=0.167 Sum_probs=105.3
Q ss_pred CeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccch-hhhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l 287 (512)
+++++|++++|.++.++ ..|.++++|++|++++|.++.++ ..+.++++|++|+|++|.++.+|. .+..+++|++|++
T Consensus 64 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 143 (440)
T 3zyj_A 64 TNTRLLNLHENQIQIIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLELFDNRLTTIPNGAFVYLSKLKELWL 143 (440)
T ss_dssp TTCSEEECCSCCCCEECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEECCSSCCSSCCTTTSCSCSSCCEEEC
T ss_pred CCCcEEEccCCcCCeeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEECCCCcCCeeCHhHhhccccCceeeC
Confidence 34555555555555332 44555555555555555555333 345555555555555555555543 2455555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH-HhccCCCCCcEEEeccCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS-KSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~-~~l~~l~~L~~L~l~~~~~p~ 366 (512)
++|.+....+..+.+ +++|++|+++++ .....++ ..+.++++|+.|++++|.+..
T Consensus 144 ~~N~i~~~~~~~~~~----------------------l~~L~~L~l~~~--~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 144 RNNPIESIPSYAFNR----------------------IPSLRRLDLGEL--KRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSCCCCEECTTTTTT----------------------CTTCCEEECCCC--TTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcccccCHHHhhh----------------------CcccCEeCCCCC--CCcceeCcchhhcccccCeecCCCCcCcc
Confidence 555554333333444 444444444443 1111111 123344444555554444332
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-e
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-M 445 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~ 445 (512)
+. .+..+ ++|+.|+|++|.+++..+..+..+++|+.|++++|.+.+..... +..+++|+.|+|++| .++.++ .
T Consensus 200 ~~--~~~~l-~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~ 273 (440)
T 3zyj_A 200 IP--NLTPL-IKLDELDLSGNHLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNA--FDNLQSLVEINLAHN-NLTLLPHD 273 (440)
T ss_dssp CC--CCTTC-SSCCEEECTTSCCCEECTTTTTTCTTCCEEECTTCCCCEECTTS--STTCTTCCEEECTTS-CCCCCCTT
T ss_pred cc--ccCCC-cccCEEECCCCccCccChhhhccCccCCEEECCCCceeEEChhh--hcCCCCCCEEECCCC-CCCccChh
Confidence 22 23344 55555555555555444455555555555555555544332221 344555555555553 333333 2
Q ss_pred CCCCccccceeeecCCc
Q 010381 446 GAGAMPKLESLIVDPCA 462 (512)
Q Consensus 446 ~~~~l~~L~~L~l~~c~ 462 (512)
.+..+++|+.|++++|+
T Consensus 274 ~~~~l~~L~~L~L~~Np 290 (440)
T 3zyj_A 274 LFTPLHHLERIHLHHNP 290 (440)
T ss_dssp TTSSCTTCCEEECCSSC
T ss_pred HhccccCCCEEEcCCCC
Confidence 23445555555555544
No 55
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.87 E-value=9.1e-22 Score=200.86 Aligned_cols=102 Identities=18% Similarity=0.232 Sum_probs=52.8
Q ss_pred CeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchh-hhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l 287 (512)
+++++|++++|.++.+ |..|..+++|++|++++|.++.++ ..+.++++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 75 ~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L 154 (452)
T 3zyi_A 75 SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFDNWLTVIPSGAFEYLSKLRELWL 154 (452)
T ss_dssp TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSBCCTTTSSSCTTCCEEEC
T ss_pred CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCCCcCCccChhhhcccCCCCEEEC
Confidence 3455555655555532 344555555666666555555333 3455555566666655555555433 445555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
++|.+....+..+.++++|+.|+++
T Consensus 155 ~~N~l~~~~~~~~~~l~~L~~L~l~ 179 (452)
T 3zyi_A 155 RNNPIESIPSYAFNRVPSLMRLDLG 179 (452)
T ss_dssp CSCCCCEECTTTTTTCTTCCEEECC
T ss_pred CCCCcceeCHhHHhcCCcccEEeCC
Confidence 5555543223334444444444443
No 56
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.86 E-value=3.5e-22 Score=191.04 Aligned_cols=247 Identities=16% Similarity=0.131 Sum_probs=127.6
Q ss_pred CeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCcc-cccc-chhhhccccCceee
Q 010381 211 KYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSY-IDQS-PEDIWMMQKLMHLN 286 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~-~~~l-p~~i~~l~~L~~L~ 286 (512)
++|++|++++|.++.++ ..+..+++|++|++++|.++.+ |..++.+++|++|++++|. +..+ |..+..+++|++|+
T Consensus 32 ~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~~l~~~~~~~~~~l~~L~~L~ 111 (285)
T 1ozn_A 32 AASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNAQLRSVDPATFHGLGRLHTLH 111 (285)
T ss_dssp TTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCTTCCCCCTTTTTTCTTCCEEE
T ss_pred CCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCCCccccCHHHhcCCcCCCEEE
Confidence 45556666666555443 3455556666666666655533 4455555666666666553 5554 34455556666666
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
+++|.+.+..|..+.++++|+.|++ +++. .....+..+..+++|+.|++++|.+..
T Consensus 112 l~~n~l~~~~~~~~~~l~~L~~L~l----------------------~~n~--l~~~~~~~~~~l~~L~~L~l~~n~l~~ 167 (285)
T 1ozn_A 112 LDRCGLQELGPGLFRGLAALQYLYL----------------------QDNA--LQALPDDTFRDLGNLTHLFLHGNRISS 167 (285)
T ss_dssp CTTSCCCCCCTTTTTTCTTCCEEEC----------------------CSSC--CCCCCTTTTTTCTTCCEEECCSSCCCE
T ss_pred CCCCcCCEECHhHhhCCcCCCEEEC----------------------CCCc--ccccCHhHhccCCCccEEECCCCcccc
Confidence 6665554443444444444444444 4441 111112224445555555555544321
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG 446 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 446 (512)
+..-.+..+ ++|+.|++++|.+.+..+..++.+++|+.|++++|.+.+..... +..+++|+.|++++++.....+.
T Consensus 168 ~~~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~l~~N~~~c~~~~- 243 (285)
T 1ozn_A 168 VPERAFRGL-HSLDRLLLHQNRVAHVHPHAFRDLGRLMTLYLFANNLSALPTEA--LAPLRALQYLRLNDNPWVCDCRA- 243 (285)
T ss_dssp ECTTTTTTC-TTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCSCCCHHH--HTTCTTCCEEECCSSCEECSGGG-
T ss_pred cCHHHhcCc-cccCEEECCCCcccccCHhHccCcccccEeeCCCCcCCcCCHHH--cccCcccCEEeccCCCccCCCCc-
Confidence 111035556 67777777777766666666777777777777777666543322 45667777777777532211110
Q ss_pred CCCccccceeeecCCcccCCCCcccC--CCCCCcEEEccCC
Q 010381 447 AGAMPKLESLIVDPCAYLRKLPEELW--CIQSLRKLDLHWP 485 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l~~lp~~~~--~l~~L~~L~l~~~ 485 (512)
......++.+....+...-..|..+. .+..++..++.+|
T Consensus 244 ~~~~~~l~~~~~~~~~~~c~~p~~l~g~~l~~l~~~~l~~C 284 (285)
T 1ozn_A 244 RPLWAWLQKFRGSSSEVPCSLPQRLAGRDLKRLAANDLQGC 284 (285)
T ss_dssp HHHHHHHHHCCSEECCCBEEESGGGTTCBGGGSCGGGSCCC
T ss_pred HHHHHHHHhcccccCccccCCchHhCCcChhhcCHHHhccC
Confidence 11122344444444443334454442 2445555555555
No 57
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.86 E-value=4e-23 Score=200.20 Aligned_cols=248 Identities=19% Similarity=0.158 Sum_probs=125.2
Q ss_pred CCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCc--ccChhhh-------cCcCCcEEecCCcccc-ccchhh--
Q 010381 209 KFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLK--CLPSQLC-------TLLNLQTLQMPSSYID-QSPEDI-- 276 (512)
Q Consensus 209 ~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~--~lp~~~~-------~l~~L~~L~L~~~~~~-~lp~~i-- 276 (512)
..++|+.|++++|.+ .+|..+... |++|+++++.++ .+|..+. ++++|++|++++|.+. .+|..+
T Consensus 41 ~~~~L~~l~l~~n~l-~~p~~~~~~--L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~ 117 (312)
T 1wwl_A 41 GGRSLEYLLKRVDTE-ADLGQFTDI--IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAPPPLLE 117 (312)
T ss_dssp EEEECTTHHHHCCTT-CCCHHHHHH--HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCCCCSSS
T ss_pred cCCCceeEeeccccc-ccHHHHHHH--HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhHHHHHH
Confidence 334445555555555 444443332 555555555543 3444333 4555555555555443 344433
Q ss_pred hccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcE
Q 010381 277 WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEW 356 (512)
Q Consensus 277 ~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~ 356 (512)
..+++|++|++++|.+.+. |..++.+. ...+++|++|+++++ ......+..++.+++|+.
T Consensus 118 ~~l~~L~~L~Ls~N~l~~~-~~~~~~l~-----------------~~~~~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~ 177 (312)
T 1wwl_A 118 ATGPDLNILNLRNVSWATR-DAWLAELQ-----------------QWLKPGLKVLSIAQA--HSLNFSCEQVRVFPALST 177 (312)
T ss_dssp CCSCCCSEEEEESCBCSSS-SSHHHHHH-----------------TTCCTTCCEEEEESC--SCCCCCTTTCCCCSSCCE
T ss_pred hcCCCccEEEccCCCCcch-hHHHHHHH-----------------HhhcCCCcEEEeeCC--CCccchHHHhccCCCCCE
Confidence 4555555555555555433 33333330 000145555555555 222223344555555555
Q ss_pred EEeccCCCCC----CcccCcCCCCCCccEEEEecccCCCC--CC-CCCCCCcccceeEEEcccccCceeeeeCCCCCccc
Q 010381 357 LKLVNESKPS----RMVLSEYQFPPSLTHLSLSNTELKED--PM-PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL 429 (512)
Q Consensus 357 L~l~~~~~p~----L~~l~~~~lp~~L~~L~L~~~~~~~~--~~-~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L 429 (512)
|++++|.+.. ...+.+..+ ++|++|++++|.+.+. .+ ..+..+++|++|++++|.+.+..+... ...+++|
T Consensus 178 L~Ls~N~l~~~~~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~-~~~l~~L 255 (312)
T 1wwl_A 178 LDLSDNPELGERGLISALCPLKF-PTLQVLALRNAGMETPSGVCSALAAARVQLQGLDLSHNSLRDAAGAPS-CDWPSQL 255 (312)
T ss_dssp EECCSCTTCHHHHHHHHSCTTSC-TTCCEEECTTSCCCCHHHHHHHHHHTTCCCSEEECTTSCCCSSCCCSC-CCCCTTC
T ss_pred EECCCCCcCcchHHHHHHHhccC-CCCCEEECCCCcCcchHHHHHHHHhcCCCCCEEECCCCcCCcccchhh-hhhcCCC
Confidence 5555554210 000012455 6666666666655421 11 122355667777777666655442222 3456677
Q ss_pred cEEEecCCCCcceeeeCCCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 430 KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 430 ~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|++++| .++.+|..+. ++|++|++++|. ++.+|. +..+++|++|++++|+
T Consensus 256 ~~L~Ls~N-~l~~ip~~~~--~~L~~L~Ls~N~-l~~~p~-~~~l~~L~~L~L~~N~ 307 (312)
T 1wwl_A 256 NSLNLSFT-GLKQVPKGLP--AKLSVLDLSYNR-LDRNPS-PDELPQVGNLSLKGNP 307 (312)
T ss_dssp CEEECTTS-CCSSCCSSCC--SEEEEEECCSSC-CCSCCC-TTTSCEEEEEECTTCT
T ss_pred CEEECCCC-ccChhhhhcc--CCceEEECCCCC-CCCChh-HhhCCCCCEEeccCCC
Confidence 77777774 4556665444 677777777775 444555 6677777777777776
No 58
>3g06_A SSPH2 (leucine-rich repeat protein); E3 ubiquitin ligase, leucine rich repeat domain, type three effector, salmonella virulence factor; 1.90A {Salmonella typhimurium}
Probab=99.85 E-value=4.2e-21 Score=201.48 Aligned_cols=235 Identities=15% Similarity=0.035 Sum_probs=150.8
Q ss_pred CCCceeEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 159 PMANVKRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 159 ~~~~~r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
.+..++.|.+..+....++. .+++|++|++++|.+. .++ ..+++|++|++++|.++.+|. .+++|++
T Consensus 59 l~~~L~~L~L~~N~l~~lp~--~l~~L~~L~Ls~N~l~-----~lp---~~l~~L~~L~Ls~N~l~~l~~---~l~~L~~ 125 (622)
T 3g06_A 59 LPAHITTLVIPDNNLTSLPA--LPPELRTLEVSGNQLT-----SLP---VLPPGLLELSIFSNPLTHLPA---LPSGLCK 125 (622)
T ss_dssp CCTTCSEEEECSCCCSCCCC--CCTTCCEEEECSCCCS-----CCC---CCCTTCCEEEECSCCCCCCCC---CCTTCCE
T ss_pred hCCCCcEEEecCCCCCCCCC--cCCCCCEEEcCCCcCC-----cCC---CCCCCCCEEECcCCcCCCCCC---CCCCcCE
Confidence 45789999999777665444 6899999999999875 232 378999999999999998887 5689999
Q ss_pred eeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCcc
Q 010381 239 LKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 239 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~ 317 (512)
|++++|.++.+|.. +++|++|++++|.+..+|. ..++|+.|++++|.+.. +| ..+++|+.|++++ .+..
T Consensus 126 L~L~~N~l~~lp~~---l~~L~~L~Ls~N~l~~l~~---~~~~L~~L~L~~N~l~~-l~---~~~~~L~~L~Ls~N~l~~ 195 (622)
T 3g06_A 126 LWIFGNQLTSLPVL---PPGLQELSVSDNQLASLPA---LPSELCKLWAYNNQLTS-LP---MLPSGLQELSVSDNQLAS 195 (622)
T ss_dssp EECCSSCCSCCCCC---CTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSCCSC-CC---CCCTTCCEEECCSSCCSC
T ss_pred EECCCCCCCcCCCC---CCCCCEEECcCCcCCCcCC---ccCCCCEEECCCCCCCC-Cc---ccCCCCcEEECCCCCCCC
Confidence 99999999999864 5899999999999998886 35789999999999864 55 4456777777764 2222
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
++. .+++|+.|++++|. ...+|. .+++|+.|++++|.+..+ -..+ ++|+.|++++|.++. .|.
T Consensus 196 l~~---~~~~L~~L~L~~N~---l~~l~~---~~~~L~~L~Ls~N~L~~l----p~~l-~~L~~L~Ls~N~L~~-lp~-- 258 (622)
T 3g06_A 196 LPT---LPSELYKLWAYNNR---LTSLPA---LPSGLKELIVSGNRLTSL----PVLP-SELKELMVSGNRLTS-LPM-- 258 (622)
T ss_dssp CCC---CCTTCCEEECCSSC---CSSCCC---CCTTCCEEECCSSCCSCC----CCCC-TTCCEEECCSSCCSC-CCC--
T ss_pred CCC---ccchhhEEECcCCc---ccccCC---CCCCCCEEEccCCccCcC----CCCC-CcCcEEECCCCCCCc-CCc--
Confidence 222 23556666665552 112221 124455555555443321 1222 455555555554432 221
Q ss_pred CCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC
Q 010381 398 EKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (512)
.+++|+.|++++|.+.. .+.. +..+++|+.|+|++|
T Consensus 259 -~~~~L~~L~Ls~N~L~~-lp~~--l~~l~~L~~L~L~~N 294 (622)
T 3g06_A 259 -LPSGLLSLSVYRNQLTR-LPES--LIHLSSETTVNLEGN 294 (622)
T ss_dssp -CCTTCCEEECCSSCCCS-CCGG--GGGSCTTCEEECCSC
T ss_pred -ccccCcEEeCCCCCCCc-CCHH--HhhccccCEEEecCC
Confidence 33445555555554441 1111 344455555555553
No 59
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.85 E-value=6.6e-24 Score=217.40 Aligned_cols=320 Identities=17% Similarity=0.104 Sum_probs=167.9
Q ss_pred CceeEEEEEecCCccc----cCC-C-CCCCeeEEEEecCCcchhhhcchhHHhcCCC----eeEEEEecCCcCC-----c
Q 010381 161 ANVKRCFILKDLIDFF----PSE-Y-SDMYLQSFLNHSSESDRLARIDCENFCKKFK----YLRVLDLGSAVLD-----Q 225 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~----~~~-~-~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~----~L~~L~l~~~~l~-----~ 225 (512)
..++++.+..+..... ... . .+++|++|+++++.+.. ..+..++..++ +|++|++++|.++ .
T Consensus 28 ~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~---~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~ 104 (461)
T 1z7x_W 28 QQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGD---VGVHCVLQGLQTPSCKIQKLSLQNCCLTGAGCGV 104 (461)
T ss_dssp TTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHH---HHHHHHHHTTCSTTCCCCEEECTTSCCBGGGHHH
T ss_pred CCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCCh---HHHHHHHHHHhhCCCceeEEEccCCCCCHHHHHH
Confidence 4566777775554421 111 1 56777777777776642 11233334444 5777777777766 3
Q ss_pred cCccccCccccCeeeecCCCCc-ccChhhh-----cCcCCcEEecCCccccc-----cchhhhccccCceeecCCcccCC
Q 010381 226 FPPGLENLFLLKYLKLNIPSLK-CLPSQLC-----TLLNLQTLQMPSSYIDQ-----SPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 226 lp~~l~~l~~L~~L~l~~~~i~-~lp~~~~-----~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
++..+..+++|++|++++|.++ ..+..+. ..++|++|++++|.++. ++..+..+++|++|++++|.+..
T Consensus 105 l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~i~~ 184 (461)
T 1z7x_W 105 LSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEPLASVLRAKPDFKELTVSNNDINE 184 (461)
T ss_dssp HHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHHHHHHHhhCCCCCEEECcCCCcch
Confidence 4666777777777777777766 2222222 24467777777776543 34455666777777777776543
Q ss_pred CCCCCCC-----CCCCCCeeecCC-CCcc-----CchhcCCCCCCCeEEEeccc--hhhhhhHHH-hccCCCCCcEEEec
Q 010381 295 PPTNYSS-----SLKNLIFVSALH-PISC-----TPDILGRLPNIQTLRISGDL--SYYQSRVSK-SLCKLQKLEWLKLV 360 (512)
Q Consensus 295 ~~p~~~~-----~l~~L~~l~l~~-~~~~-----~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~-~l~~l~~L~~L~l~ 360 (512)
..+..+. ..++|+.|++++ .+.. ++..+..+++|++|++++|. ......+.. ....+++|+.|+++
T Consensus 185 ~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~~~~~~~~L~~L~L~ 264 (461)
T 1z7x_W 185 AGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGDVGMAELCPGLLHPSSRLRTLWIW 264 (461)
T ss_dssp HHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECT
T ss_pred HHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCChHHHHHHHHHHhcCCCCceEEECc
Confidence 2222221 244666676664 2111 24445566777777777663 111111222 22346667777776
Q ss_pred cCCCCCCc--cc--CcCCCCCCccEEEEecccCCCCCCCCCC-----CCcccceeEEEcccccCcee---eeeCCCCCcc
Q 010381 361 NESKPSRM--VL--SEYQFPPSLTHLSLSNTELKEDPMPTLE-----KLPYVQVLKLKQNSYLGRKL---ACVGSGGFPE 428 (512)
Q Consensus 361 ~~~~p~L~--~l--~~~~lp~~L~~L~L~~~~~~~~~~~~l~-----~l~~L~~L~l~~~~~~~~~~---~~~~~~~~~~ 428 (512)
+|.+.... .+ .+..+ ++|++|++++|.+.+..+..+. ..++|++|++++|.+.+... ... +..+++
T Consensus 265 ~n~l~~~~~~~l~~~l~~~-~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~-l~~~~~ 342 (461)
T 1z7x_W 265 ECGITAKGCGDLCRVLRAK-ESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWVKSCSFTAACCSHFSSV-LAQNRF 342 (461)
T ss_dssp TSCCCHHHHHHHHHHHHHC-TTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHHHHHH-HHHCSS
T ss_pred CCCCCHHHHHHHHHHHhhC-CCcceEECCCCCCchHHHHHHHHHhccCCccceeeEcCCCCCchHHHHHHHHH-HhhCCC
Confidence 65443100 00 22335 5666666666655332222221 22466666666665544321 111 234466
Q ss_pred ccEEEecCCCCccee-eeCC----C-CccccceeeecCCcccC----CCCcccCCCCCCcEEEccCCh
Q 010381 429 LKVLHLKSMYWLDEW-TMGA----G-AMPKLESLIVDPCAYLR----KLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 429 L~~L~L~~~~~l~~l-~~~~----~-~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~~~ 486 (512)
|++|++++| .+... +..+ . ..++|++|++++|.... .+|..+..+++|++|++++|+
T Consensus 343 L~~L~Ls~n-~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~l~~N~ 409 (461)
T 1z7x_W 343 LLELQISNN-RLEDAGVRELCQGLGQPGSVLRVLWLADCDVSDSSCSSLAATLLANHSLRELDLSNNC 409 (461)
T ss_dssp CCEEECCSS-BCHHHHHHHHHHHHTSTTCCCCEEECTTSCCCHHHHHHHHHHHHHCCCCCEEECCSSS
T ss_pred ccEEEccCC-ccccccHHHHHHHHcCCCCceEEEECCCCCCChhhHHHHHHHHHhCCCccEEECCCCC
Confidence 666666664 23321 1111 1 14566666666665332 455555566666666666664
No 60
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.85 E-value=8.9e-23 Score=198.24 Aligned_cols=246 Identities=16% Similarity=0.095 Sum_probs=165.6
Q ss_pred hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccC
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKL 282 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L 282 (512)
..++..+++|++|++++|.++.++ ..++.+++|++|++++|.++..++ ++.+++|++|++++|.++.+|. .++|
T Consensus 27 ~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls~n~l~~l~~----~~~L 101 (317)
T 3o53_A 27 ASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSI 101 (317)
T ss_dssp HHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECCSSEEEEEEE----CTTC
T ss_pred HHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECcCCccccccC----CCCc
Confidence 555577888999999999888555 578888999999999998886654 8888899999999988877663 4888
Q ss_pred ceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccC-chhcCCCCCCCeEEEeccchhhhhhHHHhc-cCCCCCcEEEe
Q 010381 283 MHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCT-PDILGRLPNIQTLRISGDLSYYQSRVSKSL-CKLQKLEWLKL 359 (512)
Q Consensus 283 ~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l-~~l~~L~~L~l 359 (512)
++|++++|.+.+..+. .+++|+.|++++ .+... +..++.+++|+.|++++|. .....+..+ ..+++|+.|++
T Consensus 102 ~~L~l~~n~l~~~~~~---~~~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~~l~~L~~L~L 176 (317)
T 3o53_A 102 ETLHAANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLNE--IDTVNFAELAASSDTLEHLNL 176 (317)
T ss_dssp CEEECCSSCCSEEEEC---CCSSCEEEECCSSCCCSGGGBCTGGGSSEEEEECTTSC--CCEEEGGGGGGGTTTCCEEEC
T ss_pred CEEECCCCccCCcCcc---ccCCCCEEECCCCCCCCccchhhhccCCCCEEECCCCC--CCcccHHHHhhccCcCCEEEC
Confidence 9999988887654332 256677777764 22222 3355667777777777772 333233333 35677777777
Q ss_pred ccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCC
Q 010381 360 VNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYW 439 (512)
Q Consensus 360 ~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~ 439 (512)
++|.+..+. ....+ ++|++|++++|.+++. +..+..+++|+.|++++|.+.. .+. . +..+++|+.|++++|+.
T Consensus 177 ~~N~l~~~~--~~~~l-~~L~~L~Ls~N~l~~l-~~~~~~l~~L~~L~L~~N~l~~-l~~-~-~~~l~~L~~L~l~~N~~ 249 (317)
T 3o53_A 177 QYNFIYDVK--GQVVF-AKLKTLDLSSNKLAFM-GPEFQSAAGVTWISLRNNKLVL-IEK-A-LRFSQNLEHFDLRGNGF 249 (317)
T ss_dssp TTSCCCEEE--CCCCC-TTCCEEECCSSCCCEE-CGGGGGGTTCSEEECTTSCCCE-ECT-T-CCCCTTCCEEECTTCCC
T ss_pred CCCcCcccc--ccccc-ccCCEEECCCCcCCcc-hhhhcccCcccEEECcCCcccc-hhh-H-hhcCCCCCEEEccCCCc
Confidence 777664332 22335 7777777777777643 3346677777777777777653 222 2 45677777777777544
Q ss_pred c-ceeeeCCCCccccceeeecCCcccCC
Q 010381 440 L-DEWTMGAGAMPKLESLIVDPCAYLRK 466 (512)
Q Consensus 440 l-~~l~~~~~~l~~L~~L~l~~c~~l~~ 466 (512)
. ..++..+..+++|+.|++.+|+.++.
T Consensus 250 ~~~~~~~~~~~~~~L~~l~l~~~~~l~~ 277 (317)
T 3o53_A 250 HCGTLRDFFSKNQRVQTVAKQTVKKLTG 277 (317)
T ss_dssp BHHHHHHHHHTCHHHHHHHHHHHHHHHS
T ss_pred cCcCHHHHHhccccceEEECCCchhccC
Confidence 3 24555566777777777776655543
No 61
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A
Probab=99.85 E-value=9.6e-21 Score=193.28 Aligned_cols=242 Identities=18% Similarity=0.174 Sum_probs=167.1
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~ 289 (512)
..+.++.++..++.+|..+. ++|++|++++|.++.+ |..++++++|++|+|++|.+..++ ..+.++++|++|++++
T Consensus 55 ~~~~v~c~~~~l~~iP~~~~--~~l~~L~L~~n~i~~~~~~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~ 132 (452)
T 3zyi_A 55 QFSKVVCTRRGLSEVPQGIP--SNTRYLNLMENNIQMIQADTFRHLHHLEVLQLGRNSIRQIEVGAFNGLASLNTLELFD 132 (452)
T ss_dssp SSCEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCS
T ss_pred CCcEEEECCCCcCccCCCCC--CCccEEECcCCcCceECHHHcCCCCCCCEEECCCCccCCcChhhccCcccCCEEECCC
Confidence 45678888888888887665 6899999999999955 667899999999999999888776 5688999999999999
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+....+..+.++++|+.|++++ .+...+ ..+..+++|+.|+++++. ....++. .
T Consensus 133 n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~~~--~l~~i~~-------------------~- 190 (452)
T 3zyi_A 133 NWLTVIPSGAFEYLSKLRELWLRNNPIESIPSYAFNRVPSLMRLDLGELK--KLEYISE-------------------G- 190 (452)
T ss_dssp SCCSBCCTTTSSSCTTCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCT--TCCEECT-------------------T-
T ss_pred CcCCccChhhhcccCCCCEEECCCCCcceeCHhHHhcCCcccEEeCCCCC--CccccCh-------------------h-
Confidence 998755555577788888888775 222222 245556666666666541 1111111 1
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMG 446 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~ 446 (512)
.+..+ ++|+.|++++|.+.+. +.+..+++|++|++++|.+.+..+.. +.++++|+.|++++| .++.+ +..
T Consensus 191 ---~~~~l-~~L~~L~L~~n~l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~ 261 (452)
T 3zyi_A 191 ---AFEGL-FNLKYLNLGMCNIKDM--PNLTPLVGLEELEMSGNHFPEIRPGS--FHGLSSLKKLWVMNS-QVSLIERNA 261 (452)
T ss_dssp ---TTTTC-TTCCEEECTTSCCSSC--CCCTTCTTCCEEECTTSCCSEECGGG--GTTCTTCCEEECTTS-CCCEECTTT
T ss_pred ---hccCC-CCCCEEECCCCccccc--ccccccccccEEECcCCcCcccCccc--ccCccCCCEEEeCCC-cCceECHHH
Confidence 34556 6777777777766532 34667777777777777765543332 567777777777774 34444 455
Q ss_pred CCCccccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 447 AGAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++|......+..+..+++|+.|++++||
T Consensus 262 ~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~Np 301 (452)
T 3zyi_A 262 FDGLASLVELNLAHNNLSSLPHDLFTPLRYLVELHLHHNP 301 (452)
T ss_dssp TTTCTTCCEEECCSSCCSCCCTTSSTTCTTCCEEECCSSC
T ss_pred hcCCCCCCEEECCCCcCCccChHHhccccCCCEEEccCCC
Confidence 6677788888888776433333345677888888887775
No 62
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}
Probab=99.84 E-value=1.5e-20 Score=191.23 Aligned_cols=240 Identities=17% Similarity=0.196 Sum_probs=189.0
Q ss_pred eEEEEEecCCccccCCCCCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeee
Q 010381 164 KRCFILKDLIDFFPSEYSDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKL 241 (512)
Q Consensus 164 r~l~l~~~~~~~~~~~~~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l 241 (512)
+.+.........+|. .-.++++.|.+.+|.+. .+ ...|.++++|++|++++|.++.++ ..|.++++|++|++
T Consensus 46 ~~v~c~~~~l~~iP~-~~~~~l~~L~L~~n~i~-----~~~~~~~~~l~~L~~L~Ls~n~i~~i~~~~~~~l~~L~~L~L 119 (440)
T 3zyj_A 46 SKVICVRKNLREVPD-GISTNTRLLNLHENQIQ-----IIKVNSFKHLRHLEILQLSRNHIRTIEIGAFNGLANLNTLEL 119 (440)
T ss_dssp CEEECCSCCCSSCCS-CCCTTCSEEECCSCCCC-----EECTTTTSSCSSCCEEECCSSCCCEECGGGGTTCSSCCEEEC
T ss_pred CEEEeCCCCcCcCCC-CCCCCCcEEEccCCcCC-----eeCHHHhhCCCCCCEEECCCCcCCccChhhccCCccCCEEEC
Confidence 345544333444333 24578999999999886 33 333489999999999999998555 67899999999999
Q ss_pred cCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCC-CCCCCCCCCeeecCC-CCcc
Q 010381 242 NIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTN-YSSSLKNLIFVSALH-PISC 317 (512)
Q Consensus 242 ~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~-~~~~l~~L~~l~l~~-~~~~ 317 (512)
++|.++.+|. .+..+++|++|++++|.+..+|. .+.++++|++|++++|...+.++. .+.++++|+.|++++ .+..
T Consensus 120 ~~n~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~l~~~~~l~~i~~~~~~~l~~L~~L~L~~n~l~~ 199 (440)
T 3zyj_A 120 FDNRLTTIPNGAFVYLSKLKELWLRNNPIESIPSYAFNRIPSLRRLDLGELKRLSYISEGAFEGLSNLRYLNLAMCNLRE 199 (440)
T ss_dssp CSSCCSSCCTTTSCSCSSCCEEECCSCCCCEECTTTTTTCTTCCEEECCCCTTCCEECTTTTTTCSSCCEEECTTSCCSS
T ss_pred CCCcCCeeCHhHhhccccCceeeCCCCcccccCHHHhhhCcccCEeCCCCCCCcceeCcchhhcccccCeecCCCCcCcc
Confidence 9999998776 58899999999999999988875 578999999999999766555554 688999999999986 3333
Q ss_pred CchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCC
Q 010381 318 TPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTL 397 (512)
Q Consensus 318 ~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l 397 (512)
+ ..+..+++|+.|++++| ......+..+..+++|+.|++++|.+..+..-.+..+ ++|+.|+|++|.++...+..+
T Consensus 200 ~-~~~~~l~~L~~L~Ls~N--~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l-~~L~~L~L~~N~l~~~~~~~~ 275 (440)
T 3zyj_A 200 I-PNLTPLIKLDELDLSGN--HLSAIRPGSFQGLMHLQKLWMIQSQIQVIERNAFDNL-QSLVEINLAHNNLTLLPHDLF 275 (440)
T ss_dssp C-CCCTTCSSCCEEECTTS--CCCEECTTTTTTCTTCCEEECTTCCCCEECTTSSTTC-TTCCEEECTTSCCCCCCTTTT
T ss_pred c-cccCCCcccCEEECCCC--ccCccChhhhccCccCCEEECCCCceeEEChhhhcCC-CCCCEEECCCCCCCccChhHh
Confidence 3 35788899999999998 3555556778889999999999987643222167778 899999999999887777778
Q ss_pred CCCcccceeEEEcccc
Q 010381 398 EKLPYVQVLKLKQNSY 413 (512)
Q Consensus 398 ~~l~~L~~L~l~~~~~ 413 (512)
..+++|+.|++++|.+
T Consensus 276 ~~l~~L~~L~L~~Np~ 291 (440)
T 3zyj_A 276 TPLHHLERIHLHHNPW 291 (440)
T ss_dssp SSCTTCCEEECCSSCE
T ss_pred ccccCCCEEEcCCCCc
Confidence 8899999999998875
No 63
>1z7x_W Ribonuclease inhibitor; leucine-rich repeat, enzyme- inhibitor complex, structural genomics, protein structure initiative, PSI, CESG; HET: CIT; 1.95A {Homo sapiens} SCOP: c.10.1.1 PDB: 2q4g_W* 2bex_A 1a4y_A 2bnh_A 1dfj_I
Probab=99.84 E-value=9.5e-24 Score=216.22 Aligned_cols=326 Identities=15% Similarity=0.001 Sum_probs=229.6
Q ss_pred CCceeEEEEEecCCccccCCC---CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-cCcc-ccCcc
Q 010381 160 MANVKRCFILKDLIDFFPSEY---SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-FPPG-LENLF 234 (512)
Q Consensus 160 ~~~~r~l~l~~~~~~~~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-lp~~-l~~l~ 234 (512)
+..++++.+..+......... .+++|++|.+.++.+.......+...+..+++|++|++++|.++. .+.. ...+.
T Consensus 2 ~~~l~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~ 81 (461)
T 1z7x_W 2 SLDIQSLDIQCEELSDARWAELLPLLQQCQVVRLDDCGLTEARCKDISSALRVNPALAELNLRSNELGDVGVHCVLQGLQ 81 (461)
T ss_dssp CEEEEEEEEESCCCCHHHHHHHHHHHTTCSEEEEESSCCCHHHHHHHHHHHHTCTTCCEEECTTCCCHHHHHHHHHHTTC
T ss_pred CccceehhhhhcccCchhHHHHHhhcCCccEEEccCCCCCHHHHHHHHHHHHhCCCcCEEeCCCCcCChHHHHHHHHHHh
Confidence 456888999866554433222 789999999999988643333454444889999999999999872 2222 23344
Q ss_pred ----ccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCcccccc-chhhh-----ccccCceeecCCcccCCC----
Q 010381 235 ----LLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQS-PEDIW-----MMQKLMHLNFGSITLPAP---- 295 (512)
Q Consensus 235 ----~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~l-p~~i~-----~l~~L~~L~l~~~~~~~~---- 295 (512)
+|++|++++|.++ .+|..+..+++|++|++++|.++.. +..+. ..++|++|++++|.+...
T Consensus 82 ~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~ 161 (461)
T 1z7x_W 82 TPSCKIQKLSLQNCCLTGAGCGVLSSTLRTLPTLQELHLSDNLLGDAGLQLLCEGLLDPQCRLEKLQLEYCSLSAASCEP 161 (461)
T ss_dssp STTCCCCEEECTTSCCBGGGHHHHHHHTTSCTTCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSCCBGGGHHH
T ss_pred hCCCceeEEEccCCCCCHHHHHHHHHHHccCCceeEEECCCCcCchHHHHHHHHHHhcCCCcceEEECCCCCCCHHHHHH
Confidence 7999999999988 4678889999999999999987542 22222 256899999999988753
Q ss_pred CCCCCCCCCCCCeeecCCC-Ccc-CchhcC-----CCCCCCeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 296 PTNYSSSLKNLIFVSALHP-ISC-TPDILG-----RLPNIQTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 296 ~p~~~~~l~~L~~l~l~~~-~~~-~~~~l~-----~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
++..+..+++|+.|+++++ +.. .+..+. ..++|++|++++|. ......++..+..+++|+.|++++|.+..
T Consensus 162 l~~~l~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~ 241 (461)
T 1z7x_W 162 LASVLRAKPDFKELTVSNNDINEAGVRVLCQGLKDSPCQLEALKLESCGVTSDNCRDLCGIVASKASLRELALGSNKLGD 241 (461)
T ss_dssp HHHHHHHCTTCCEEECCSSBCHHHHHHHHHHHHHHSCCCCCEEECTTSCCBTTHHHHHHHHHHHCTTCCEEECCSSBCHH
T ss_pred HHHHHhhCCCCCEEECcCCCcchHHHHHHHHHHhcCCCCceEEEccCCCCcHHHHHHHHHHHHhCCCccEEeccCCcCCh
Confidence 3555677899999999862 111 112222 36699999999984 22233578888899999999999987632
Q ss_pred C--ccc---CcCCCCCCccEEEEecccCCCC----CCCCCCCCcccceeEEEcccccCceeeee---CCCCCccccEEEe
Q 010381 367 R--MVL---SEYQFPPSLTHLSLSNTELKED----PMPTLEKLPYVQVLKLKQNSYLGRKLACV---GSGGFPELKVLHL 434 (512)
Q Consensus 367 L--~~l---~~~~lp~~L~~L~L~~~~~~~~----~~~~l~~l~~L~~L~l~~~~~~~~~~~~~---~~~~~~~L~~L~L 434 (512)
. ..+ ....+ ++|++|++++|.++.. .+..+..+++|++|++++|.+.+..+... -....++|++|++
T Consensus 242 ~~~~~l~~~~~~~~-~~L~~L~L~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L 320 (461)
T 1z7x_W 242 VGMAELCPGLLHPS-SRLRTLWIWECGITAKGCGDLCRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESLWV 320 (461)
T ss_dssp HHHHHHHHHHTSTT-CCCCEEECTTSCCCHHHHHHHHHHHHHCTTCCEEECTTCCCHHHHHHHHHHHHTSTTCCCCEEEC
T ss_pred HHHHHHHHHHhcCC-CCceEEECcCCCCCHHHHHHHHHHHhhCCCcceEECCCCCCchHHHHHHHHHhccCCccceeeEc
Confidence 0 000 22346 8999999999988653 34456678999999999998765432211 0233479999999
Q ss_pred cCCCCcce----eeeCCCCccccceeeecCCcccCCCCc----ccCC-CCCCcEEEccCCh
Q 010381 435 KSMYWLDE----WTMGAGAMPKLESLIVDPCAYLRKLPE----ELWC-IQSLRKLDLHWPQ 486 (512)
Q Consensus 435 ~~~~~l~~----l~~~~~~l~~L~~L~l~~c~~l~~lp~----~~~~-l~~L~~L~l~~~~ 486 (512)
++|..... ++..+..+++|++|++++|......+. .+.. .++|++|++++|.
T Consensus 321 ~~n~l~~~~~~~l~~~l~~~~~L~~L~Ls~n~i~~~~~~~l~~~l~~~~~~L~~L~L~~n~ 381 (461)
T 1z7x_W 321 KSCSFTAACCSHFSSVLAQNRFLLELQISNNRLEDAGVRELCQGLGQPGSVLRVLWLADCD 381 (461)
T ss_dssp TTSCCBGGGHHHHHHHHHHCSSCCEEECCSSBCHHHHHHHHHHHHTSTTCCCCEEECTTSC
T ss_pred CCCCCchHHHHHHHHHHhhCCCccEEEccCCccccccHHHHHHHHcCCCCceEEEECCCCC
Confidence 99753322 455566789999999999974433222 2222 7899999999996
No 64
>3o53_A Protein LRIM1, AGAP006348-PA; leucine-rich repeat, protein binding; HET: NAG; 2.00A {Anopheles gambiae}
Probab=99.84 E-value=1.3e-21 Score=190.00 Aligned_cols=259 Identities=12% Similarity=0.052 Sum_probs=153.6
Q ss_pred CeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 288 (512)
..++..+++.+.+...+ ..+..+++|++|++++|.++.++ ..++.+++|++|++++|.+...++ +..+++|++|+++
T Consensus 10 ~~l~i~~ls~~~l~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l~~~~~-~~~l~~L~~L~Ls 88 (317)
T 3o53_A 10 NRYKIEKVTDSSLKQALASLRQSAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLN 88 (317)
T ss_dssp TEEEEESCCTTTHHHHHHHHHTTGGGCSEEECTTSCCCCCCHHHHTTCTTCCEEECTTSCCEEEEE-ETTCTTCCEEECC
T ss_pred CceeEeeccccchhhhHHHHhccCCCCCEEECcCCccCcCCHHHhhCCCcCCEEECCCCcCCcchh-hhhcCCCCEEECc
Confidence 45667777777776333 34556789999999999999665 578999999999999998877665 8899999999999
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCC-CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHP-ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~-~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
+|.+.+ +...++|+.|+++++ +...+ ...+++|+.|+++++ ......+..+..+++|+.|++++|.+..+
T Consensus 89 ~n~l~~-----l~~~~~L~~L~l~~n~l~~~~--~~~~~~L~~L~l~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~ 159 (317)
T 3o53_A 89 NNYVQE-----LLVGPSIETLHAANNNISRVS--CSRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKLNEIDTV 159 (317)
T ss_dssp SSEEEE-----EEECTTCCEEECCSSCCSEEE--ECCCSSCEEEECCSS--CCCSGGGBCTGGGSSEEEEECTTSCCCEE
T ss_pred CCcccc-----ccCCCCcCEEECCCCccCCcC--ccccCCCCEEECCCC--CCCCccchhhhccCCCCEEECCCCCCCcc
Confidence 998753 223367777777642 12211 233556666666666 23222233445555666666665544321
Q ss_pred cccCc-CCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC
Q 010381 368 MVLSE-YQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG 446 (512)
Q Consensus 368 ~~l~~-~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~ 446 (512)
..-.+ ..+ ++|++|++++|.+++. +....+++|++|++++|.+.+.... +..+++|+.|++++| .++.+|..
T Consensus 160 ~~~~~~~~l-~~L~~L~L~~N~l~~~--~~~~~l~~L~~L~Ls~N~l~~l~~~---~~~l~~L~~L~L~~N-~l~~l~~~ 232 (317)
T 3o53_A 160 NFAELAASS-DTLEHLNLQYNFIYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRNN-KLVLIEKA 232 (317)
T ss_dssp EGGGGGGGT-TTCCEEECTTSCCCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTTS-CCCEECTT
T ss_pred cHHHHhhcc-CcCCEEECCCCcCccc--ccccccccCCEEECCCCcCCcchhh---hcccCcccEEECcCC-cccchhhH
Confidence 10012 234 5566666666555432 1222355566666665555432211 344555666666553 44455555
Q ss_pred CCCccccceeeecCCccc-CCCCcccCCCCCCcEEEccCCh
Q 010381 447 AGAMPKLESLIVDPCAYL-RKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 447 ~~~l~~L~~L~l~~c~~l-~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+..+++|+.|++++|+.. ..+|..+..+++|+.+++.+|+
T Consensus 233 ~~~l~~L~~L~l~~N~~~~~~~~~~~~~~~~L~~l~l~~~~ 273 (317)
T 3o53_A 233 LRFSQNLEHFDLRGNGFHCGTLRDFFSKNQRVQTVAKQTVK 273 (317)
T ss_dssp CCCCTTCCEEECTTCCCBHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred hhcCCCCCEEEccCCCccCcCHHHHHhccccceEEECCCch
Confidence 555556666666655544 3444455555555555555443
No 65
>1wwl_A Monocyte differentiation antigen CD14; LPS, immune system; HET: NAG; 2.50A {Mus musculus}
Probab=99.84 E-value=3.6e-22 Score=193.47 Aligned_cols=241 Identities=16% Similarity=0.141 Sum_probs=164.0
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC--ccCcccc-------CccccCeeeecCCCCc-ccC
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD--QFPPGLE-------NLFLLKYLKLNIPSLK-CLP 250 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~lp~~l~-------~l~~L~~L~l~~~~i~-~lp 250 (512)
.++|+.|.+.++.+ .+ ..++.. |+.|++++|.++ .+|..+. .+++|++|++++|.++ .+|
T Consensus 42 ~~~L~~l~l~~n~l------~~p~~~~~~---L~~L~L~~n~l~~~~~~~~~~~~~~~~~~l~~L~~L~L~~n~l~~~~~ 112 (312)
T 1wwl_A 42 GRSLEYLLKRVDTE------ADLGQFTDI---IKSLSLKRLTVRAARIPSRILFGALRVLGISGLQELTLENLEVTGTAP 112 (312)
T ss_dssp EEECTTHHHHCCTT------CCCHHHHHH---HHHCCCCEEEEEEEECBHHHHHHHHHHHTTSCCCEEEEEEEBCBSCCC
T ss_pred CCCceeEeeccccc------ccHHHHHHH---HhhcccccccccCCCcCHHHHHHHHHhcCcCCccEEEccCCcccchhH
Confidence 34566666666655 22 333222 888899999885 5776665 7899999999999998 788
Q ss_pred hhh--hcCcCCcEEecCCccccccchhhhcc-----ccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcC
Q 010381 251 SQL--CTLLNLQTLQMPSSYIDQSPEDIWMM-----QKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILG 323 (512)
Q Consensus 251 ~~~--~~l~~L~~L~L~~~~~~~lp~~i~~l-----~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~ 323 (512)
..+ +.+++|++|++++|.+..+|..++.+ ++|++|++++|.+.+..|..++++++|+.|+++
T Consensus 113 ~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~l~~~~~~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls----------- 181 (312)
T 1wwl_A 113 PPLLEATGPDLNILNLRNVSWATRDAWLAELQQWLKPGLKVLSIAQAHSLNFSCEQVRVFPALSTLDLS----------- 181 (312)
T ss_dssp CCSSSCCSCCCSEEEEESCBCSSSSSHHHHHHTTCCTTCCEEEEESCSCCCCCTTTCCCCSSCCEEECC-----------
T ss_pred HHHHHhcCCCccEEEccCCCCcchhHHHHHHHHhhcCCCcEEEeeCCCCccchHHHhccCCCCCEEECC-----------
Confidence 876 89999999999999998888888887 999999999999876555666666555555555
Q ss_pred CCCCCCeEEEeccchhhhh--hHHHhc--cCCCCCcEEEeccCCCCCCccc---CcCCCCCCccEEEEecccCCCCCC-C
Q 010381 324 RLPNIQTLRISGDLSYYQS--RVSKSL--CKLQKLEWLKLVNESKPSRMVL---SEYQFPPSLTHLSLSNTELKEDPM-P 395 (512)
Q Consensus 324 ~l~~L~~L~l~~~~~~~~~--~l~~~l--~~l~~L~~L~l~~~~~p~L~~l---~~~~lp~~L~~L~L~~~~~~~~~~-~ 395 (512)
+|. ... .++..+ ..+++|+.|++++|.+..+..+ .+..+ ++|+.|++++|.+.+..+ .
T Consensus 182 -----------~N~--l~~~~~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~~~~l-~~L~~L~Ls~N~l~~~~~~~ 247 (312)
T 1wwl_A 182 -----------DNP--ELGERGLISALCPLKFPTLQVLALRNAGMETPSGVCSALAAAR-VQLQGLDLSHNSLRDAAGAP 247 (312)
T ss_dssp -----------SCT--TCHHHHHHHHSCTTSCTTCCEEECTTSCCCCHHHHHHHHHHTT-CCCSEEECTTSCCCSSCCCS
T ss_pred -----------CCC--cCcchHHHHHHHhccCCCCCEEECCCCcCcchHHHHHHHHhcC-CCCCEEECCCCcCCcccchh
Confidence 331 111 122333 4555555555555544321111 12345 677777777777665443 3
Q ss_pred CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCcc
Q 010381 396 TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAY 463 (512)
Q Consensus 396 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~ 463 (512)
.+..+++|++|++++|.+. ..+.. +. ++|++|++++ +.++.+|. +..+++|++|++++|+.
T Consensus 248 ~~~~l~~L~~L~Ls~N~l~-~ip~~--~~--~~L~~L~Ls~-N~l~~~p~-~~~l~~L~~L~L~~N~l 308 (312)
T 1wwl_A 248 SCDWPSQLNSLNLSFTGLK-QVPKG--LP--AKLSVLDLSY-NRLDRNPS-PDELPQVGNLSLKGNPF 308 (312)
T ss_dssp CCCCCTTCCEEECTTSCCS-SCCSS--CC--SEEEEEECCS-SCCCSCCC-TTTSCEEEEEECTTCTT
T ss_pred hhhhcCCCCEEECCCCccC-hhhhh--cc--CCceEEECCC-CCCCCChh-HhhCCCCCEEeccCCCC
Confidence 4556778888888888776 23222 22 7888888888 46676766 77888888888888874
No 66
>1ozn_A Reticulon 4 receptor; NOGO receptor, MAD, myelination inhibition, OMGP, MAG, NOGO- signal transduction, neuronal regeneration, ligand binding; HET: NDG MAN NAG BMA; 1.52A {Homo sapiens} SCOP: c.10.2.7 PDB: 1p8t_A* 3kj4_A*
Probab=99.84 E-value=2.9e-20 Score=177.70 Aligned_cols=220 Identities=18% Similarity=0.123 Sum_probs=147.8
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCcccccc-chhhhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~ 291 (512)
++++.+++.++.+|..+ .++|++|++++|.++.+| ..++.+++|++|++++|.+..+ |..+..+++|++|++++|.
T Consensus 14 ~~~~c~~~~l~~ip~~~--~~~l~~L~l~~n~i~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~ 91 (285)
T 1ozn_A 14 VTTSCPQQGLQAVPVGI--PAASQRIFLHGNRISHVPAASFRACRNLTILWLHSNVLARIDAAAFTGLALLEQLDLSDNA 91 (285)
T ss_dssp CEEECCSSCCSSCCTTC--CTTCSEEECTTSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSCT
T ss_pred eEEEcCcCCcccCCcCC--CCCceEEEeeCCcCCccCHHHcccCCCCCEEECCCCccceeCHhhcCCccCCCEEeCCCCC
Confidence 56777777777777544 357788888887777655 3467777788888777777665 4567777777777777775
Q ss_pred cCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccC
Q 010381 292 LPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLS 371 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~ 371 (512)
... ...+..+..+++|++|+++++. ..... |. .
T Consensus 92 ~l~---------------------~~~~~~~~~l~~L~~L~l~~n~--l~~~~--------------------~~----~ 124 (285)
T 1ozn_A 92 QLR---------------------SVDPATFHGLGRLHTLHLDRCG--LQELG--------------------PG----L 124 (285)
T ss_dssp TCC---------------------CCCTTTTTTCTTCCEEECTTSC--CCCCC--------------------TT----T
T ss_pred Ccc---------------------ccCHHHhcCCcCCCEEECCCCc--CCEEC--------------------Hh----H
Confidence 211 1113345566677777777661 11111 22 4
Q ss_pred cCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCccee-eeCCCCc
Q 010381 372 EYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEW-TMGAGAM 450 (512)
Q Consensus 372 ~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l-~~~~~~l 450 (512)
+..+ ++|++|++++|.+....+..++.+++|++|++++|.+.+.... . +..+++|+.|++++|. ++.+ |..+..+
T Consensus 125 ~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~-~-~~~l~~L~~L~l~~n~-l~~~~~~~~~~l 200 (285)
T 1ozn_A 125 FRGL-AALQYLYLQDNALQALPDDTFRDLGNLTHLFLHGNRISSVPER-A-FRGLHSLDRLLLHQNR-VAHVHPHAFRDL 200 (285)
T ss_dssp TTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCEECTT-T-TTTCTTCCEEECCSSC-CCEECTTTTTTC
T ss_pred hhCC-cCCCEEECCCCcccccCHhHhccCCCccEEECCCCcccccCHH-H-hcCccccCEEECCCCc-ccccCHhHccCc
Confidence 5566 7778888888877766666677888888888888776543222 2 5677888888888854 4444 6677788
Q ss_pred cccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 451 PKLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 451 ~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++|+.|++++|......+..+..+++|+.|++++|+
T Consensus 201 ~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 236 (285)
T 1ozn_A 201 GRLMTLYLFANNLSALPTEALAPLRALQYLRLNDNP 236 (285)
T ss_dssp TTCCEEECCSSCCSCCCHHHHTTCTTCCEEECCSSC
T ss_pred ccccEeeCCCCcCCcCCHHHcccCcccCEEeccCCC
Confidence 888888888887444333457888888888888875
No 67
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.82 E-value=2e-21 Score=205.44 Aligned_cols=320 Identities=10% Similarity=0.050 Sum_probs=188.9
Q ss_pred CceeEEEEEecCCccccCCC--C-CCC-eeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-----cCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--S-DMY-LQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-----FPPGLE 231 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~-~~~-Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----lp~~l~ 231 (512)
..++.+.+..+......... . +++ |++|.+.++.... ...+..+...+++|++|++++|.++. ++..+.
T Consensus 112 ~~L~~L~L~~~~i~~~~~~~l~~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~~~~~~~~~l~~~~~ 189 (592)
T 3ogk_B 112 RQLKSVHFRRMIVSDLDLDRLAKARADDLETLKLDKCSGFT--TDGLLSIVTHCRKIKTLLMEESSFSEKDGKWLHELAQ 189 (592)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHHGGGCCEEEEESCEEEE--HHHHHHHHHHCTTCSEEECTTCEEECCCSHHHHHHHH
T ss_pred CCCCeEEeeccEecHHHHHHHHHhccccCcEEECcCCCCcC--HHHHHHHHhhCCCCCEEECccccccCcchhHHHHHHh
Confidence 56777888754333211111 2 334 8888888775321 22344454678888888888887652 334456
Q ss_pred CccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccC-------------
Q 010381 232 NLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLP------------- 293 (512)
Q Consensus 232 ~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~------------- 293 (512)
.+++|++|+++++.++ .++..+.++++|++|++++|.+..+|..+.++++|++|+++.+...
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 6788888888888775 4555567788899999988888778877888888888888643221
Q ss_pred -------------CCCCCCCCCCCCCCeeecCCCC---ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEE
Q 010381 294 -------------APPTNYSSSLKNLIFVSALHPI---SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWL 357 (512)
Q Consensus 294 -------------~~~p~~~~~l~~L~~l~l~~~~---~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L 357 (512)
..+|..+..+++|+.|++++.. ......+..+++|++|+++++ .....++.....+++|+.|
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~--~~~~~l~~~~~~~~~L~~L 347 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNV--IGDRGLEVLAQYCKQLKRL 347 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTCCEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCc--cCHHHHHHHHHhCCCCCEE
Confidence 1223333445555666665420 011122466667777777644 3344445555667777777
Q ss_pred Eec-----------cCC------------CCCCcccCc-------------C-CCCCCccEEEEec----ccCCCCCC--
Q 010381 358 KLV-----------NES------------KPSRMVLSE-------------Y-QFPPSLTHLSLSN----TELKEDPM-- 394 (512)
Q Consensus 358 ~l~-----------~~~------------~p~L~~l~~-------------~-~lp~~L~~L~L~~----~~~~~~~~-- 394 (512)
+++ .+. +|+|+.|.+ . .+ ++|+.|++++ +.+++.+.
T Consensus 348 ~L~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~-~~L~~L~l~~~~~~n~l~~~p~~~ 426 (592)
T 3ogk_B 348 RIERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYL-KNLCDFRLVLLDREERITDLPLDN 426 (592)
T ss_dssp EEECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHC-CSCCEEEEEECSCCSCCSSCCCHH
T ss_pred EeecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhC-CCCcEEEEeecCCCccccCchHHH
Confidence 777 222 234444411 1 14 5666666653 22322111
Q ss_pred ---CCCCCCcccceeEEEccc--ccCceeeeeCCCCCccccEEEecCCCCcc-eeeeCCCCccccceeeecCCcccC-CC
Q 010381 395 ---PTLEKLPYVQVLKLKQNS--YLGRKLACVGSGGFPELKVLHLKSMYWLD-EWTMGAGAMPKLESLIVDPCAYLR-KL 467 (512)
Q Consensus 395 ---~~l~~l~~L~~L~l~~~~--~~~~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~-~l 467 (512)
..+..+++|+.|+++.|. +.+..+... ...+++|++|++++|.... .++.....+++|++|++++|+... .+
T Consensus 427 ~~~~~~~~~~~L~~L~L~~~~~~l~~~~~~~~-~~~~~~L~~L~L~~n~l~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~ 505 (592)
T 3ogk_B 427 GVRSLLIGCKKLRRFAFYLRQGGLTDLGLSYI-GQYSPNVRWMLLGYVGESDEGLMEFSRGCPNLQKLEMRGCCFSERAI 505 (592)
T ss_dssp HHHHHHHHCTTCCEEEEECCGGGCCHHHHHHH-HHSCTTCCEEEECSCCSSHHHHHHHHTCCTTCCEEEEESCCCBHHHH
T ss_pred HHHHHHHhCCCCCEEEEecCCCCccHHHHHHH-HHhCccceEeeccCCCCCHHHHHHHHhcCcccCeeeccCCCCcHHHH
Confidence 113446667777775433 333333222 2346778888888754222 344445677888888888888322 24
Q ss_pred CcccCCCCCCcEEEccCCh
Q 010381 468 PEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 468 p~~~~~l~~L~~L~l~~~~ 486 (512)
+..+..+++|++|++++|.
T Consensus 506 ~~~~~~l~~L~~L~ls~n~ 524 (592)
T 3ogk_B 506 AAAVTKLPSLRYLWVQGYR 524 (592)
T ss_dssp HHHHHHCSSCCEEEEESCB
T ss_pred HHHHHhcCccCeeECcCCc
Confidence 4445678888888888887
No 68
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=2.6e-21 Score=198.80 Aligned_cols=234 Identities=16% Similarity=0.086 Sum_probs=159.9
Q ss_pred CCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 209 KFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 209 ~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
.+++|++|++++|.++.++ ..++.+++|++|++++|.++..++ ++.+++|++|++++|.++.+|. .++|++|++
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~~----~~~L~~L~L 106 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQELLV----GPSIETLHA 106 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEEEEE----CTTCCEEEC
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCCCCC----CCCcCEEEC
Confidence 3447888888888887554 578888888888888888875554 7788888888888887777663 378888888
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCC-CCc-cCchhcCCCCCCCeEEEeccchhhhhhHHHhcc-CCCCCcEEEeccCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALH-PIS-CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLC-KLQKLEWLKLVNESK 364 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~-~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~-~l~~L~~L~l~~~~~ 364 (512)
++|.+.+..+. .+++|+.|++++ .+. ..+..++.+++|+.|++++| ......|..+. .+++|+.|++++|.+
T Consensus 107 ~~N~l~~~~~~---~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~Ls~N--~l~~~~~~~l~~~l~~L~~L~Ls~N~l 181 (487)
T 3oja_A 107 ANNNISRVSCS---RGQGKKNIYLANNKITMLRDLDEGCRSRVQYLDLKLN--EIDTVNFAELAASSDTLEHLNLQYNFI 181 (487)
T ss_dssp CSSCCCCEEEC---CCSSCEEEECCSSCCCSGGGBCGGGGSSEEEEECTTS--CCCEEEGGGGGGGTTTCCEEECTTSCC
T ss_pred cCCcCCCCCcc---ccCCCCEEECCCCCCCCCCchhhcCCCCCCEEECCCC--CCCCcChHHHhhhCCcccEEecCCCcc
Confidence 88887654332 346677777764 222 23445667777788887777 34444455554 677888888888766
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc-cee
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL-DEW 443 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l-~~l 443 (512)
..+. ....+ ++|+.|+|++|.+++.++ .+..+++|+.|++++|.+.+ .+. . +..+++|+.|++++|+.. ..+
T Consensus 182 ~~~~--~~~~l-~~L~~L~Ls~N~l~~~~~-~~~~l~~L~~L~Ls~N~l~~-lp~-~-l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 182 YDVK--GQVVF-AKLKTLDLSSNKLAFMGP-EFQSAAGVTWISLRNNKLVL-IEK-A-LRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CEEE--CCCCC-TTCCEEECCSSCCCEECG-GGGGGTTCSEEECTTSCCCE-ECT-T-CCCCTTCCEEECTTCCBCHHHH
T ss_pred cccc--ccccC-CCCCEEECCCCCCCCCCH-hHcCCCCccEEEecCCcCcc-cch-h-hccCCCCCEEEcCCCCCcCcch
Confidence 4322 23346 788888888888765433 47778888888888877764 222 2 566778888888886543 255
Q ss_pred eeCCCCccccceeeec
Q 010381 444 TMGAGAMPKLESLIVD 459 (512)
Q Consensus 444 ~~~~~~l~~L~~L~l~ 459 (512)
|..+..++.|+.+++.
T Consensus 255 ~~~~~~l~~L~~l~~~ 270 (487)
T 3oja_A 255 RDFFSKNQRVQTVAKQ 270 (487)
T ss_dssp HHHHTTCHHHHHHHHH
T ss_pred HHHHHhCCCCcEEecc
Confidence 5666777777777775
No 69
>3oja_A Leucine-rich immune molecule 1; coiled-coil, helix-loop-helix, leucine-rich repeat, protein; HET: NAG MAN; 2.70A {Anopheles gambiae}
Probab=99.82 E-value=1.6e-20 Score=192.96 Aligned_cols=234 Identities=12% Similarity=0.058 Sum_probs=126.7
Q ss_pred CccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 232 NLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 232 ~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
.+++|++|++++|.++.++ ..++.+++|++|+|++|.+...++ +..+++|++|++++|.+.+ +| ..++|+.|+
T Consensus 32 ~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~-l~----~~~~L~~L~ 105 (487)
T 3oja_A 32 SAWNVKELDLSGNPLSQISAADLAPFTKLELLNLSSNVLYETLD-LESLSTLRTLDLNNNYVQE-LL----VGPSIETLH 105 (487)
T ss_dssp TGGGCCEEECCSSCCCCCCGGGGTTCTTCCEEECTTSCCEEEEE-CTTCTTCCEEECCSSEEEE-EE----ECTTCCEEE
T ss_pred cCCCccEEEeeCCcCCCCCHHHHhCCCCCCEEEeeCCCCCCCcc-cccCCCCCEEEecCCcCCC-CC----CCCCcCEEE
Confidence 4458999999999999664 678999999999999998876665 8899999999999998753 22 236667777
Q ss_pred cCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcC-CCCCCccEEEEeccc
Q 010381 311 ALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEY-QFPPSLTHLSLSNTE 388 (512)
Q Consensus 311 l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~-~lp~~L~~L~L~~~~ 388 (512)
+++ .+...+. ..+++|+.|++++| ......|..++.+++|+.|++++|.+.....-.+. .+ ++|+.|+|++|.
T Consensus 106 L~~N~l~~~~~--~~l~~L~~L~L~~N--~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~l~~~l-~~L~~L~Ls~N~ 180 (487)
T 3oja_A 106 AANNNISRVSC--SRGQGKKNIYLANN--KITMLRDLDEGCRSRVQYLDLKLNEIDTVNFAELAASS-DTLEHLNLQYNF 180 (487)
T ss_dssp CCSSCCCCEEE--CCCSSCEEEECCSS--CCCSGGGBCGGGGSSEEEEECTTSCCCEEEGGGGGGGT-TTCCEEECTTSC
T ss_pred CcCCcCCCCCc--cccCCCCEEECCCC--CCCCCCchhhcCCCCCCEEECCCCCCCCcChHHHhhhC-CcccEEecCCCc
Confidence 664 2111111 23455556666555 23333333444455555555555443210000221 34 455555555554
Q ss_pred CCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCCCccccceeeecCCccc-CCC
Q 010381 389 LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYL-RKL 467 (512)
Q Consensus 389 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l-~~l 467 (512)
+++. +....+++|+.|++++|.+.+..+. +..+++|+.|++++ +.++.+|..++.+++|+.|++++|+.. ..+
T Consensus 181 l~~~--~~~~~l~~L~~L~Ls~N~l~~~~~~---~~~l~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~l~~N~l~c~~~ 254 (487)
T 3oja_A 181 IYDV--KGQVVFAKLKTLDLSSNKLAFMGPE---FQSAAGVTWISLRN-NKLVLIEKALRFSQNLEHFDLRGNGFHCGTL 254 (487)
T ss_dssp CCEE--ECCCCCTTCCEEECCSSCCCEECGG---GGGGTTCSEEECTT-SCCCEECTTCCCCTTCCEEECTTCCBCHHHH
T ss_pred cccc--cccccCCCCCEEECCCCCCCCCCHh---HcCCCCccEEEecC-CcCcccchhhccCCCCCEEEcCCCCCcCcch
Confidence 4332 1122344555555554444432211 23444555555554 234444444444455555555554433 233
Q ss_pred CcccCCCCCCcEEEc
Q 010381 468 PEELWCIQSLRKLDL 482 (512)
Q Consensus 468 p~~~~~l~~L~~L~l 482 (512)
|..+..+++|+.+++
T Consensus 255 ~~~~~~l~~L~~l~~ 269 (487)
T 3oja_A 255 RDFFSKNQRVQTVAK 269 (487)
T ss_dssp HHHHTTCHHHHHHHH
T ss_pred HHHHHhCCCCcEEec
Confidence 334444444444443
No 70
>3ogk_B Coronatine-insensitive protein 1; leucine rich repeat, ubiquitin ligase, SCF, protein binding; HET: OGK; 2.80A {Arabidopsis thaliana} PDB: 3ogl_B* 3ogm_B*
Probab=99.80 E-value=1.5e-21 Score=206.29 Aligned_cols=302 Identities=13% Similarity=0.028 Sum_probs=163.5
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCC----cccChhhhcC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSL----KCLPSQLCTL 256 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i----~~lp~~~~~l 256 (512)
.+++|++|.+.++.........+..++..+++|++|++++|.+..+|..+..+++|++|++++... ...+..+..+
T Consensus 190 ~~~~L~~L~L~~n~~~~~~~~~l~~~~~~~~~L~~L~L~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~~l~~~ 269 (592)
T 3ogk_B 190 HNTSLEVLNFYMTEFAKISPKDLETIARNCRSLVSVKVGDFEILELVGFFKAAANLEEFCGGSLNEDIGMPEKYMNLVFP 269 (592)
T ss_dssp HCCCCCEEECTTCCCSSCCHHHHHHHHHHCTTCCEEECSSCBGGGGHHHHHHCTTCCEEEECBCCCCTTCTTSSSCCCCC
T ss_pred cCCCccEEEeeccCCCccCHHHHHHHHhhCCCCcEEeccCccHHHHHHHHhhhhHHHhhcccccccccchHHHHHHhhcc
Confidence 345555555554444311112333333455555555555555444444444445555555442111 1222233334
Q ss_pred cCCcEEecCCccccccchhhhccccCceeecCCcccCCCCC-CCCCCCCCCCeeecCCCC--ccCchhcCCCCCCCeEEE
Q 010381 257 LNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPT-NYSSSLKNLIFVSALHPI--SCTPDILGRLPNIQTLRI 333 (512)
Q Consensus 257 ~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p-~~~~~l~~L~~l~l~~~~--~~~~~~l~~l~~L~~L~l 333 (512)
++|+.|+++++....+|..+..+++|++|++++|.+....+ ..+.++++|+.|++.+.+ ...+.....+++|++|++
T Consensus 270 ~~L~~L~l~~~~~~~l~~~~~~~~~L~~L~Ls~~~l~~~~~~~~~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~L 349 (592)
T 3ogk_B 270 RKLCRLGLSYMGPNEMPILFPFAAQIRKLDLLYALLETEDHCTLIQKCPNLEVLETRNVIGDRGLEVLAQYCKQLKRLRI 349 (592)
T ss_dssp TTCCEEEETTCCTTTGGGGGGGGGGCCEEEETTCCCCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCTTCCEEEE
T ss_pred ccccccCccccchhHHHHHHhhcCCCcEEecCCCcCCHHHHHHHHHhCcCCCEEeccCccCHHHHHHHHHhCCCCCEEEe
Confidence 44444444444344556666677777777777776432211 223556666666654210 112222234555666666
Q ss_pred ec----------cchhhhhhHHHhccCCCCCcEEEeccCC------------CCCCcccC--------------------
Q 010381 334 SG----------DLSYYQSRVSKSLCKLQKLEWLKLVNES------------KPSRMVLS-------------------- 371 (512)
Q Consensus 334 ~~----------~~~~~~~~l~~~l~~l~~L~~L~l~~~~------------~p~L~~l~-------------------- 371 (512)
++ |.......++.....+++|+.|+++.+. +|+|+.|.
T Consensus 350 ~~g~~~~~~~~~~~~~~~~~~~~l~~~~~~L~~L~l~~~~l~~~~~~~l~~~~~~L~~L~l~~~~~~n~l~~~p~~~~~~ 429 (592)
T 3ogk_B 350 ERGADEQGMEDEEGLVSQRGLIALAQGCQELEYMAVYVSDITNESLESIGTYLKNLCDFRLVLLDREERITDLPLDNGVR 429 (592)
T ss_dssp ECCCCSSTTSSTTCCCCHHHHHHHHHHCTTCSEEEEEESCCCHHHHHHHHHHCCSCCEEEEEECSCCSCCSSCCCHHHHH
T ss_pred ecCccccccccccCccCHHHHHHHHhhCccCeEEEeecCCccHHHHHHHHhhCCCCcEEEEeecCCCccccCchHHHHHH
Confidence 52 2111111222223334445555443321 22333331
Q ss_pred --cCCCCCCccEEEEeccc--CCCCCCCCCC-CCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcc--eee
Q 010381 372 --EYQFPPSLTHLSLSNTE--LKEDPMPTLE-KLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLD--EWT 444 (512)
Q Consensus 372 --~~~lp~~L~~L~L~~~~--~~~~~~~~l~-~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~--~l~ 444 (512)
+..+ ++|+.|+++.|. +++..+..++ .+++|+.|++++|.+.+..+... ..++++|++|+|++|. ++ .++
T Consensus 430 ~~~~~~-~~L~~L~L~~~~~~l~~~~~~~~~~~~~~L~~L~L~~n~l~~~~~~~~-~~~~~~L~~L~l~~n~-l~~~~~~ 506 (592)
T 3ogk_B 430 SLLIGC-KKLRRFAFYLRQGGLTDLGLSYIGQYSPNVRWMLLGYVGESDEGLMEF-SRGCPNLQKLEMRGCC-FSERAIA 506 (592)
T ss_dssp HHHHHC-TTCCEEEEECCGGGCCHHHHHHHHHSCTTCCEEEECSCCSSHHHHHHH-HTCCTTCCEEEEESCC-CBHHHHH
T ss_pred HHHHhC-CCCCEEEEecCCCCccHHHHHHHHHhCccceEeeccCCCCCHHHHHHH-HhcCcccCeeeccCCC-CcHHHHH
Confidence 3347 899999998764 4433333333 48899999999999876554443 5788999999999987 44 244
Q ss_pred eCCCCccccceeeecCCcccCC-CCcccCCCCCCcEEEccCC
Q 010381 445 MGAGAMPKLESLIVDPCAYLRK-LPEELWCIQSLRKLDLHWP 485 (512)
Q Consensus 445 ~~~~~l~~L~~L~l~~c~~l~~-lp~~~~~l~~L~~L~l~~~ 485 (512)
.....+++|+.|++++|+.... +......+|.++...+...
T Consensus 507 ~~~~~l~~L~~L~ls~n~it~~~~~~l~~~~p~l~~~~~~~~ 548 (592)
T 3ogk_B 507 AAVTKLPSLRYLWVQGYRASMTGQDLMQMARPYWNIELIPSR 548 (592)
T ss_dssp HHHHHCSSCCEEEEESCBCCTTCTTGGGGCCTTEEEEEECCC
T ss_pred HHHHhcCccCeeECcCCcCCHHHHHHHHHhCCCcEEEEecCc
Confidence 4456789999999999994433 2223356888888888776
No 71
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=8e-19 Score=166.80 Aligned_cols=199 Identities=21% Similarity=0.202 Sum_probs=110.1
Q ss_pred eeEEEEecCCcCCccCc-cccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccc-hhhhccccCceeecC
Q 010381 212 YLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFG 288 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~ 288 (512)
.|++|++++|.++.++. .+.++++|++|++++|.++.++. .++++++|++|++++|.+..++ ..+.++++|++|+++
T Consensus 29 ~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~ 108 (276)
T 2z62_A 29 STKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQSLALGAFSGLSSLQKLVAV 108 (276)
T ss_dssp TCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCCEECTTTTTTCTTCCEEECT
T ss_pred CccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccCccChhhhcCCccccEEECC
Confidence 45666666666654433 55566666666666666664443 4556666666666666555544 345566666666666
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCC-CCc--cCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCc----EEEecc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALH-PIS--CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLE----WLKLVN 361 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~-~~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~----~L~l~~ 361 (512)
+|.+.+..+..++++++|+.|++++ .+. ..+..++.+++|+.|++++|. .....+..+..+++|+ .|++++
T Consensus 109 ~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~--l~~~~~~~~~~l~~L~~l~l~L~ls~ 186 (276)
T 2z62_A 109 ETNLASLENFPIGHLKTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNK--IQSIYCTDLRVLHQMPLLNLSLDLSL 186 (276)
T ss_dssp TSCCCCSTTCCCTTCTTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSC--CCEECGGGGHHHHTCTTCCEEEECCS
T ss_pred CCCccccCchhcccCCCCCEEECcCCccceecCchhhccCCCCCEEECCCCC--CCcCCHHHhhhhhhccccceeeecCC
Confidence 6665544444455556666665553 112 245566667777777777662 2221122232233333 666666
Q ss_pred CCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEccccc
Q 010381 362 ESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYL 414 (512)
Q Consensus 362 ~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (512)
|.+..+.. ..... .+|+.|++++|.+++.++..++.+++|+.|++++|.+.
T Consensus 187 n~l~~~~~-~~~~~-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~N~~~ 237 (276)
T 2z62_A 187 NPMNFIQP-GAFKE-IRLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTNPWD 237 (276)
T ss_dssp SCCCEECT-TSSCS-CCEEEEECCSSCCSCCCTTTTTTCCSCCEEECCSSCBC
T ss_pred CcccccCc-cccCC-CcccEEECCCCceeecCHhHhcccccccEEEccCCccc
Confidence 65432110 22333 46777777777766555555666777777777766653
No 72
>2z62_A TOLL-like receptor 4, variable lymphocyte recepto; TLR, VLR hybrid, MD-2, LPS, glycoprotein response, inflammatory response, innate immunity; HET: NAG FUL BMA; 1.70A {Homo sapiens} PDB: 2z65_A* 3ul8_A* 3ula_A* 3ul7_A*
Probab=99.79 E-value=5.2e-19 Score=168.07 Aligned_cols=215 Identities=18% Similarity=0.170 Sum_probs=131.6
Q ss_pred EEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccC
Q 010381 216 LDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 216 L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~ 293 (512)
.+..+..++.+|..+. ++|++|++++|.++.++. .++++++|++|++++|.+..++. .+.++++|++|++++|.+.
T Consensus 12 ~~c~~~~l~~ip~~l~--~~l~~L~ls~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~ 89 (276)
T 2z62_A 12 YQCMELNFYKIPDNLP--FSTKNLDLSFNPLRHLGSYSFFSFPELQVLDLSRCEIQTIEDGAYQSLSHLSTLILTGNPIQ 89 (276)
T ss_dssp EECTTSCCSSCCSSSC--TTCCEEECTTCCCCEECTTTTTTCTTCSEEECTTCCCCEECTTTTTTCTTCCEEECTTCCCC
T ss_pred EEecCCCccccCCCCC--CCccEEECCCCcccccCHhHhccccCCcEEECCCCcCCccCHHHccCCcCCCEEECCCCccC
Confidence 4455555667776554 468888888888886655 67788888888888887777664 5777888888888877764
Q ss_pred CCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcC
Q 010381 294 APPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEY 373 (512)
Q Consensus 294 ~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~ 373 (512)
+ ..+..+..+++|++|+++++ .+..+....+.
T Consensus 90 ~----------------------~~~~~~~~l~~L~~L~l~~n--------------------------~l~~~~~~~~~ 121 (276)
T 2z62_A 90 S----------------------LALGAFSGLSSLQKLVAVET--------------------------NLASLENFPIG 121 (276)
T ss_dssp E----------------------ECTTTTTTCTTCCEEECTTS--------------------------CCCCSTTCCCT
T ss_pred c----------------------cChhhhcCCccccEEECCCC--------------------------CccccCchhcc
Confidence 2 22234556667777777666 22111111344
Q ss_pred CCCCCccEEEEecccCCCC-CCCCCCCCcccceeEEEcccccCceeeeeCCCCCcccc----EEEecCCCCcceeeeCCC
Q 010381 374 QFPPSLTHLSLSNTELKED-PMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELK----VLHLKSMYWLDEWTMGAG 448 (512)
Q Consensus 374 ~lp~~L~~L~L~~~~~~~~-~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~----~L~L~~~~~l~~l~~~~~ 448 (512)
.+ ++|++|++++|.+.+. .+..++.+++|++|++++|.+.+..... +..+++|+ .|++++ +.++.++....
T Consensus 122 ~l-~~L~~L~l~~n~l~~~~l~~~~~~l~~L~~L~Ls~N~l~~~~~~~--~~~l~~L~~l~l~L~ls~-n~l~~~~~~~~ 197 (276)
T 2z62_A 122 HL-KTLKELNVAHNLIQSFKLPEYFSNLTNLEHLDLSSNKIQSIYCTD--LRVLHQMPLLNLSLDLSL-NPMNFIQPGAF 197 (276)
T ss_dssp TC-TTCCEEECCSSCCCCCCCCGGGGGCTTCCEEECCSSCCCEECGGG--GHHHHTCTTCCEEEECCS-SCCCEECTTSS
T ss_pred cC-CCCCEEECcCCccceecCchhhccCCCCCEEECCCCCCCcCCHHH--hhhhhhccccceeeecCC-CcccccCcccc
Confidence 55 6666666666666542 3556666667777777766654432211 23334444 666766 34555655444
Q ss_pred CccccceeeecCCcccCCCCc-ccCCCCCCcEEEccCC
Q 010381 449 AMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHWP 485 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~~ 485 (512)
...+|+.|++++|. ++.+|. .+..+++|++|++++|
T Consensus 198 ~~~~L~~L~L~~n~-l~~~~~~~~~~l~~L~~L~l~~N 234 (276)
T 2z62_A 198 KEIRLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTN 234 (276)
T ss_dssp CSCCEEEEECCSSC-CSCCCTTTTTTCCSCCEEECCSS
T ss_pred CCCcccEEECCCCc-eeecCHhHhcccccccEEEccCC
Confidence 55567777777766 444444 3466777777777744
No 73
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.78 E-value=6.9e-19 Score=169.88 Aligned_cols=191 Identities=20% Similarity=0.218 Sum_probs=102.3
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~ 289 (512)
+++|+.|++++|.++.+| .+..+++|++|++++|.++.++. ++.+++|++|++++|.+..++ .+..+++|++|++++
T Consensus 40 l~~L~~L~l~~~~i~~l~-~~~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~~L~l~~ 116 (308)
T 1h6u_A 40 LDGITTLSAFGTGVTTIE-GVQYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIKTLDLTS 116 (308)
T ss_dssp HHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCCEEECTT
T ss_pred cCCcCEEEeeCCCccCch-hhhccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCCEEECCC
Confidence 344555555555554443 34455555555555555554444 555555555555555554443 344555555555555
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
|.+.+ ++ .+..+++|+.|++++ .+...+ .++.+++|+.|++++|. . ..++. +..+++|+.|++++|.+..+.
T Consensus 117 n~l~~-~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~l~~n~--l-~~~~~-l~~l~~L~~L~l~~n~l~~~~ 189 (308)
T 1h6u_A 117 TQITD-VT-PLAGLSNLQVLYLDLNQITNIS-PLAGLTNLQYLSIGNAQ--V-SDLTP-LANLSKLTTLKADDNKISDIS 189 (308)
T ss_dssp SCCCC-CG-GGTTCTTCCEEECCSSCCCCCG-GGGGCTTCCEEECCSSC--C-CCCGG-GTTCTTCCEEECCSSCCCCCG
T ss_pred CCCCC-ch-hhcCCCCCCEEECCCCccCcCc-cccCCCCccEEEccCCc--C-CCChh-hcCCCCCCEEECCCCccCcCh
Confidence 55432 22 144444444444443 112222 25566666666666662 1 12222 566667777777776665433
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.+..+ ++|+.|++++|.+.+.. .+..+++|+.|++++|.+..
T Consensus 190 --~l~~l-~~L~~L~L~~N~l~~~~--~l~~l~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 190 --PLASL-PNLIEVHLKNNQISDVS--PLANTSNLFIVTLTNQTITN 231 (308)
T ss_dssp --GGGGC-TTCCEEECTTSCCCBCG--GGTTCTTCCEEEEEEEEEEC
T ss_pred --hhcCC-CCCCEEEccCCccCccc--cccCCCCCCEEEccCCeeec
Confidence 34556 77777777777765433 36677777777777777654
No 74
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.78 E-value=2.4e-20 Score=182.62 Aligned_cols=230 Identities=17% Similarity=0.218 Sum_probs=139.9
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCc-c-cChhhhcCcCCcEEecCCcccc-ccchhhhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLK-C-LPSQLCTLLNLQTLQMPSSYID-QSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~-~-lp~~~~~l~~L~~L~L~~~~~~-~lp~~i~~l~~L~~L~l 287 (512)
+.+++|+++++.+...+..+..+++|++|++++|.++ . +|..+..+++|++|++++|.+. ..|..+.++++|++|++
T Consensus 70 ~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~l~~~~~L~~L~L 149 (336)
T 2ast_B 70 QGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQNLSLEGLRLSDPIVNTLAKNSNLVRLNL 149 (336)
T ss_dssp TTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCSEEECTTCBCCHHHHHHHTTCTTCSEEEC
T ss_pred ccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCCEEeCcCcccCHHHHHHHhcCCCCCEEEC
Confidence 6677777777777655555666777777777777766 2 6666777777777777777654 45566777777777777
Q ss_pred CCc-ccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCC-CCcEEEeccCC--
Q 010381 288 GSI-TLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQ-KLEWLKLVNES-- 363 (512)
Q Consensus 288 ~~~-~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~-~L~~L~l~~~~-- 363 (512)
++| .+.. ...+..+..+++|++|++++|.......++..+..++ +|+.|++++|.
T Consensus 150 ~~~~~l~~---------------------~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~~~~~l~~~L~~L~l~~~~~~ 208 (336)
T 2ast_B 150 SGCSGFSE---------------------FALQTLLSSCSRLDELNLSWCFDFTEKHVQVAVAHVSETITQLNLSGYRKN 208 (336)
T ss_dssp TTCBSCCH---------------------HHHHHHHHHCTTCCEEECCCCTTCCHHHHHHHHHHSCTTCCEEECCSCGGG
T ss_pred CCCCCCCH---------------------HHHHHHHhcCCCCCEEcCCCCCCcChHHHHHHHHhcccCCCEEEeCCCccc
Confidence 777 3321 1233344555666666666652112223455555666 66666666652
Q ss_pred C-----CCCcccCcCCCCCCccEEEEeccc-CCCCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCCCccccEEEecC
Q 010381 364 K-----PSRMVLSEYQFPPSLTHLSLSNTE-LKEDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGGFPELKVLHLKS 436 (512)
Q Consensus 364 ~-----p~L~~l~~~~lp~~L~~L~L~~~~-~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~L~~ 436 (512)
+ |. .+..+ ++|+.|++++|. +++..+..++.+++|++|++++|. +....+.. +..+++|+.|++++
T Consensus 209 ~~~~~l~~----~~~~~-~~L~~L~l~~~~~l~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~--l~~~~~L~~L~l~~ 281 (336)
T 2ast_B 209 LQKSDLST----LVRRC-PNLVHLDLSDSVMLKNDCFQEFFQLNYLQHLSLSRCYDIIPETLLE--LGEIPTLKTLQVFG 281 (336)
T ss_dssp SCHHHHHH----HHHHC-TTCSEEECTTCTTCCGGGGGGGGGCTTCCEEECTTCTTCCGGGGGG--GGGCTTCCEEECTT
T ss_pred CCHHHHHH----HHhhC-CCCCEEeCCCCCcCCHHHHHHHhCCCCCCEeeCCCCCCCCHHHHHH--HhcCCCCCEEeccC
Confidence 2 11 23455 677777777776 555556667777888888888774 32222211 45678888888888
Q ss_pred CCCcceeeeCCCCc-cccceeeecCCcccCCCCcccC
Q 010381 437 MYWLDEWTMGAGAM-PKLESLIVDPCAYLRKLPEELW 472 (512)
Q Consensus 437 ~~~l~~l~~~~~~l-~~L~~L~l~~c~~l~~lp~~~~ 472 (512)
| +.. ..+..+ .+|+.|++++|......|..++
T Consensus 282 ~--i~~--~~~~~l~~~l~~L~l~~n~l~~~~~~~~~ 314 (336)
T 2ast_B 282 I--VPD--GTLQLLKEALPHLQINCSHFTTIARPTIG 314 (336)
T ss_dssp S--SCT--TCHHHHHHHSTTSEESCCCSCCTTCSSCS
T ss_pred c--cCH--HHHHHHHhhCcceEEecccCccccCCccc
Confidence 6 221 012223 3466677777776666665444
No 75
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.78 E-value=2.4e-18 Score=162.86 Aligned_cols=195 Identities=24% Similarity=0.251 Sum_probs=106.2
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchhh-hccccCceeecCC
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPEDI-WMMQKLMHLNFGS 289 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L~l~~ 289 (512)
..+.++++++.++.+|..+. ++|++|++++|.++.+|. .++++++|++|++++|.+..+|..+ .++++|++|++++
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~ 94 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQTLPAGIFKELKNLETLWVTD 94 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSCCCTTTTSSCTTCCEEECCS
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCeeChhhhcCCCCCCEEECCC
Confidence 35667777777776666543 467777777777775554 4667777777777777776666543 5677777777777
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccC-chhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCT-PDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~-~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+....+..+.++++|+.|++++ .+... +..++.+++|+.|+++++ .+..+
T Consensus 95 n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n--------------------------~l~~~ 148 (270)
T 2o6q_A 95 NKLQALPIGVFDQLVNLAELRLDRNQLKSLPPRVFDSLTKLTYLSLGYN--------------------------ELQSL 148 (270)
T ss_dssp SCCCCCCTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSS--------------------------CCCCC
T ss_pred CcCCcCCHhHcccccCCCEEECCCCccCeeCHHHhCcCcCCCEEECCCC--------------------------cCCcc
Confidence 776543334445555555555543 11111 122344444444444444 22211
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSM 437 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~ 437 (512)
..-.+..+ ++|+.|++++|.+....+..+..+++|++|++++|.+....... +..+++|+.|+++++
T Consensus 149 ~~~~~~~l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N 215 (270)
T 2o6q_A 149 PKGVFDKL-TSLKELRLYNNQLKRVPEGAFDKLTELKTLKLDNNQLKRVPEGA--FDSLEKLKMLQLQEN 215 (270)
T ss_dssp CTTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSS
T ss_pred CHhHccCC-cccceeEecCCcCcEeChhHhccCCCcCEEECCCCcCCcCCHHH--hccccCCCEEEecCC
Confidence 10023444 55555555555555444444555555555555555554322111 344555556665554
No 76
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.78 E-value=1.3e-18 Score=166.29 Aligned_cols=199 Identities=21% Similarity=0.120 Sum_probs=121.8
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchhhhccccCceee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLN 286 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~ 286 (512)
.++++++.++++++.++.+|..+. +++++|++++|.++.+ |..+..+++|++|++++|.++.++.. +.+++|++|+
T Consensus 7 ~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~-~~l~~L~~L~ 83 (290)
T 1p9a_G 7 SKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTKLQVD-GTLPVLGTLD 83 (290)
T ss_dssp ECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCEEECC-SCCTTCCEEE
T ss_pred cccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCcccCC-CCCCcCCEEE
Confidence 567778888888888887776654 5788888888888744 45677888888888888877777654 6778888888
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS 366 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~ 366 (512)
+++|.+. .+|..+..+++|+.|+++ ++ ......+..+..+++|+.|++++|.+..
T Consensus 84 Ls~N~l~-~l~~~~~~l~~L~~L~l~----------------------~N--~l~~l~~~~~~~l~~L~~L~L~~N~l~~ 138 (290)
T 1p9a_G 84 LSHNQLQ-SLPLLGQTLPALTVLDVS----------------------FN--RLTSLPLGALRGLGELQELYLKGNELKT 138 (290)
T ss_dssp CCSSCCS-SCCCCTTTCTTCCEEECC----------------------SS--CCCCCCSSTTTTCTTCCEEECTTSCCCC
T ss_pred CCCCcCC-cCchhhccCCCCCEEECC----------------------CC--cCcccCHHHHcCCCCCCEEECCCCCCCc
Confidence 8887774 445444444444444444 33 1111111223344444444444443322
Q ss_pred CcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 367 RMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 367 L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
+..-.+..+ ++|+.|++++|.++..++..+..+++|+.|++++|.+... +.. +...++|+.|++++++
T Consensus 139 ~~~~~~~~l-~~L~~L~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~l~~i-p~~--~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 139 LPPGLLTPT-PKLEKLSLANNNLTELPAGLLNGLENLDTLLLQENSLYTI-PKG--FFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CCTTTTTTC-TTCCEEECTTSCCSCCCTTTTTTCTTCCEEECCSSCCCCC-CTT--TTTTCCCSEEECCSCC
T ss_pred cChhhcccc-cCCCEEECCCCcCCccCHHHhcCcCCCCEEECCCCcCCcc-Chh--hcccccCCeEEeCCCC
Confidence 111034455 6777777777777655555566677777777777766532 221 3445667777777643
No 77
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.78 E-value=5.2e-19 Score=167.64 Aligned_cols=206 Identities=18% Similarity=0.197 Sum_probs=96.9
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFG 288 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~ 288 (512)
+++|+.|+++++.++.++ .++.+++|++|++++|.++.++ .++.+++|++|++++|.+..++.. +.++++|++|+++
T Consensus 40 l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 117 (272)
T 3rfs_A 40 LNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQSLPNGVFDKLTNLKELVLV 117 (272)
T ss_dssp HTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred ccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCccChhHhcCCcCCCEEECC
Confidence 344555555555544333 2444555555555555554432 444555555555555544444432 3445555555555
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+.+..+.. ++.+++|+.|++++| .+..+.
T Consensus 118 ~n~l~~~~~~~----------------------~~~l~~L~~L~L~~n--------------------------~l~~~~ 149 (272)
T 3rfs_A 118 ENQLQSLPDGV----------------------FDKLTNLTYLNLAHN--------------------------QLQSLP 149 (272)
T ss_dssp TSCCCCCCTTT----------------------TTTCTTCCEEECCSS--------------------------CCCCCC
T ss_pred CCcCCccCHHH----------------------hccCCCCCEEECCCC--------------------------ccCccC
Confidence 55443222222 233444444444443 111000
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCCC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGAG 448 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~ 448 (512)
.-.+..+ ++|+.|++++|.+++..+..++.+++|+.|++++|.+.+..+.. +..+++|+.|++++|+. .+
T Consensus 150 ~~~~~~l-~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~~-------~~ 219 (272)
T 3rfs_A 150 KGVFDKL-TNLTELDLSYNQLQSLPEGVFDKLTQLKDLRLYQNQLKSVPDGV--FDRLTSLQYIWLHDNPW-------DC 219 (272)
T ss_dssp TTTTTTC-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSSCB-------CC
T ss_pred HHHhccC-ccCCEEECCCCCcCccCHHHhcCCccCCEEECCCCcCCccCHHH--HhCCcCCCEEEccCCCc-------cc
Confidence 0023344 55555555555555444444555555666666555554433221 34555666666655421 13
Q ss_pred CccccceeeecCCcccCCCCcccCCCC
Q 010381 449 AMPKLESLIVDPCAYLRKLPEELWCIQ 475 (512)
Q Consensus 449 ~l~~L~~L~l~~c~~l~~lp~~~~~l~ 475 (512)
.+|+|+.|++..|.....+|..++.++
T Consensus 220 ~~~~l~~l~~~~n~~~g~ip~~~~~~~ 246 (272)
T 3rfs_A 220 TCPGIRYLSEWINKHSGVVRNSAGSVA 246 (272)
T ss_dssp CTTTTHHHHHHHHHTGGGBBCTTSCBC
T ss_pred cCcHHHHHHHHHHhCCCcccCcccccC
Confidence 355566666666555555555554443
No 78
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.78 E-value=2.6e-20 Score=196.88 Aligned_cols=319 Identities=14% Similarity=0.096 Sum_probs=203.7
Q ss_pred CceeEEEEEecCCccccCCC---CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCc-----cCccccC
Q 010381 161 ANVKRCFILKDLIDFFPSEY---SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQ-----FPPGLEN 232 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~---~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~-----lp~~l~~ 232 (512)
..++++.+..+......... .+++|++|.+.++.... ...+..+...+++|++|++++|.++. ++.....
T Consensus 105 ~~L~~L~L~~~~~~~~~~~~l~~~~~~L~~L~L~~~~~~~--~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~ 182 (594)
T 2p1m_B 105 TWLEEIRLKRMVVTDDCLELIAKSFKNFKVLVLSSCEGFS--TDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHFPDT 182 (594)
T ss_dssp TTCCEEEEESCBCCHHHHHHHHHHCTTCCEEEEESCEEEE--HHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGSCTT
T ss_pred CCCCeEEeeCcEEcHHHHHHHHHhCCCCcEEeCCCcCCCC--HHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHHhhc
Confidence 57888888855443322222 57899999999884321 22345665689999999999998652 3333446
Q ss_pred ccccCeeeecCCC--Cc--ccChhhhcCcCCcEEecCCc-cccccchhhhccccCceeecCCccc---------------
Q 010381 233 LFLLKYLKLNIPS--LK--CLPSQLCTLLNLQTLQMPSS-YIDQSPEDIWMMQKLMHLNFGSITL--------------- 292 (512)
Q Consensus 233 l~~L~~L~l~~~~--i~--~lp~~~~~l~~L~~L~L~~~-~~~~lp~~i~~l~~L~~L~l~~~~~--------------- 292 (512)
+++|++|++++|. +. .++..+..+++|++|++++| .+..+|..+.++++|++|+++.+..
T Consensus 183 ~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~~l~ 262 (594)
T 2p1m_B 183 YTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSVALS 262 (594)
T ss_dssp CCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHHHHH
T ss_pred CCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHHHHh
Confidence 7899999999886 33 34444566899999999998 6677777788888888888665421
Q ss_pred -----------CC----CCCCCCCCCCCCCeeecCCC-Cc--cCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCC
Q 010381 293 -----------PA----PPTNYSSSLKNLIFVSALHP-IS--CTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKL 354 (512)
Q Consensus 293 -----------~~----~~p~~~~~l~~L~~l~l~~~-~~--~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L 354 (512)
.. .++..+..+++|+.|++++. +. .....+..+++|++|++.+| .....++.....+++|
T Consensus 263 ~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~l~~~~l~~~~~~~~~L~~L~l~~~--~~~~~l~~l~~~~~~L 340 (594)
T 2p1m_B 263 GCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYATVQSYDLVKLLCQCPKLQRLWVLDY--IEDAGLEVLASTCKDL 340 (594)
T ss_dssp TCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCCCCHHHHHHHHTTCTTCCEEEEEGG--GHHHHHHHHHHHCTTC
T ss_pred cCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCCCCHHHHHHHHhcCCCcCEEeCcCc--cCHHHHHHHHHhCCCC
Confidence 00 12222235678888888752 11 12233568899999999988 3444555555568889
Q ss_pred cEEEecc---------C------------CCCCCccc-------------Cc-CCCCCCccEEEEe--c----ccCCCCC
Q 010381 355 EWLKLVN---------E------------SKPSRMVL-------------SE-YQFPPSLTHLSLS--N----TELKEDP 393 (512)
Q Consensus 355 ~~L~l~~---------~------------~~p~L~~l-------------~~-~~lp~~L~~L~L~--~----~~~~~~~ 393 (512)
+.|++.. + .+|+|+.| .+ ..+ ++|+.|+++ + +.++...
T Consensus 341 ~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~~~L~~L~~~~~~l~~~~~~~l~~~~-~~L~~L~L~~~~~~~~~~l~~~~ 419 (594)
T 2p1m_B 341 RELRVFPSEPFVMEPNVALTEQGLVSVSMGCPKLESVLYFCRQMTNAALITIARNR-PNMTRFRLCIIEPKAPDYLTLEP 419 (594)
T ss_dssp CEEEEECSCTTCSSCSSCCCHHHHHHHHHHCTTCCEEEEEESCCCHHHHHHHHHHC-TTCCEEEEEESSTTCCCTTTCCC
T ss_pred CEEEEecCcccccccCCCCCHHHHHHHHHhchhHHHHHHhcCCcCHHHHHHHHhhC-CCcceeEeecccCCCcccccCCc
Confidence 9998832 1 13455544 11 135 677777777 2 2332211
Q ss_pred CC-----CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC-CCCccccceeeecCCcccCC-
Q 010381 394 MP-----TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG-AGAMPKLESLIVDPCAYLRK- 466 (512)
Q Consensus 394 ~~-----~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~- 466 (512)
.+ .+..+++|+.|++++ .+.+..+... ...+++|+.|+|++|......+.. ..++++|+.|++++|+....
T Consensus 420 ~~~~~~~l~~~~~~L~~L~L~~-~l~~~~~~~l-~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~~~~~~ 497 (594)
T 2p1m_B 420 LDIGFGAIVEHCKDLRRLSLSG-LLTDKVFEYI-GTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCPFGDKA 497 (594)
T ss_dssp THHHHHHHHHHCTTCCEEECCS-SCCHHHHHHH-HHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCSCCHHH
T ss_pred hhhHHHHHHhhCCCccEEeecC-cccHHHHHHH-HHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCCCcHHH
Confidence 11 144567777777764 4443333322 123788999999887532222222 25689999999999986322
Q ss_pred CCcccCCCCCCcEEEccCCh
Q 010381 467 LPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 467 lp~~~~~l~~L~~L~l~~~~ 486 (512)
++..+..+++|+.|++++|+
T Consensus 498 ~~~~~~~l~~L~~L~l~~~~ 517 (594)
T 2p1m_B 498 LLANASKLETMRSLWMSSCS 517 (594)
T ss_dssp HHHTGGGGGGSSEEEEESSC
T ss_pred HHHHHHhCCCCCEEeeeCCC
Confidence 22244568999999999997
No 79
>3rfs_A Internalin B, repeat modules, variable lymphocyte B; LRR, protein binding, plasma; 1.70A {Listeria monocytogenes} PDB: 3rfj_A
Probab=99.77 E-value=6.9e-19 Score=166.82 Aligned_cols=209 Identities=16% Similarity=0.142 Sum_probs=140.7
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCC
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
.+++..+.+... .....+++|+.|+++++.++.++ .++.+++|++|++++|.+..++ .+..+++|++|++++|.+.+
T Consensus 23 ~l~l~~~~~~~~-~~~~~l~~L~~L~l~~~~i~~~~-~l~~l~~L~~L~l~~n~l~~~~-~l~~l~~L~~L~L~~n~l~~ 99 (272)
T 3rfs_A 23 KANLKKKSVTDA-VTQNELNSIDQIIANNSDIKSVQ-GIQYLPNVRYLALGGNKLHDIS-ALKELTNLTYLILTGNQLQS 99 (272)
T ss_dssp HHHHTCSCTTSE-ECHHHHTTCCEEECTTSCCCCCT-TGGGCTTCCEEECTTSCCCCCG-GGTTCTTCCEEECTTSCCCC
T ss_pred HHHhcCcccccc-cccccccceeeeeeCCCCccccc-ccccCCCCcEEECCCCCCCCch-hhcCCCCCCEEECCCCccCc
Confidence 334444444422 22445667777777777776665 4667777777777777666654 56677777777777776643
Q ss_pred CCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCC
Q 010381 295 PPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ 374 (512)
Q Consensus 295 ~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~ 374 (512)
..+. .++.+++|++|++++| .+..+..-.+..
T Consensus 100 ~~~~----------------------~~~~l~~L~~L~L~~n--------------------------~l~~~~~~~~~~ 131 (272)
T 3rfs_A 100 LPNG----------------------VFDKLTNLKELVLVEN--------------------------QLQSLPDGVFDK 131 (272)
T ss_dssp CCTT----------------------TTTTCTTCCEEECTTS--------------------------CCCCCCTTTTTT
T ss_pred cChh----------------------HhcCCcCCCEEECCCC--------------------------cCCccCHHHhcc
Confidence 2221 2334444445554444 221111004667
Q ss_pred CCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCcccc
Q 010381 375 FPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKL 453 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L 453 (512)
+ ++|++|++++|.+++..+..++.+++|++|++++|.+.+..... ++.+++|++|++++| .++.++ ..++.+++|
T Consensus 132 l-~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~~~~~~~~~l~~L 207 (272)
T 3rfs_A 132 L-TNLTYLNLAHNQLQSLPKGVFDKLTNLTELDLSYNQLQSLPEGV--FDKLTQLKDLRLYQN-QLKSVPDGVFDRLTSL 207 (272)
T ss_dssp C-TTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTC
T ss_pred C-CCCCEEECCCCccCccCHHHhccCccCCEEECCCCCcCccCHHH--hcCCccCCEEECCCC-cCCccCHHHHhCCcCC
Confidence 8 99999999999998777777899999999999999987654332 578999999999996 566555 446889999
Q ss_pred ceeeecCCcccCCCCcccCCCCCCcEEEccCC
Q 010381 454 ESLIVDPCAYLRKLPEELWCIQSLRKLDLHWP 485 (512)
Q Consensus 454 ~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~ 485 (512)
+.|++++|+... .+++|+.++++.|
T Consensus 208 ~~L~l~~N~~~~-------~~~~l~~l~~~~n 232 (272)
T 3rfs_A 208 QYIWLHDNPWDC-------TCPGIRYLSEWIN 232 (272)
T ss_dssp CEEECCSSCBCC-------CTTTTHHHHHHHH
T ss_pred CEEEccCCCccc-------cCcHHHHHHHHHH
Confidence 999999997543 3566776666554
No 80
>1p9a_G Platelet glycoprotein IB alpha chain precursor; platelet receptors, glycocalicin, leucine rich repeats, BLOO clotting; HET: NAG BMA; 1.70A {Homo sapiens} SCOP: c.10.2.7 PDB: 1ook_G* 1qyy_A* 3pmh_G* 1m0z_A 1m10_B 1sq0_B 1gwb_A* 1p8v_A* 1u0n_D 3p72_A
Probab=99.77 E-value=4.9e-18 Score=162.34 Aligned_cols=199 Identities=22% Similarity=0.246 Sum_probs=135.4
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCe
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIF 308 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~ 308 (512)
++++++++.++++++.++.+|..+. ++++.|++++|.+..++ ..+..+++|++|++++|.+.+ ++
T Consensus 6 ~~~l~~l~~l~~~~~~l~~ip~~~~--~~l~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~n~l~~-~~----------- 71 (290)
T 1p9a_G 6 VSKVASHLEVNCDKRNLTALPPDLP--KDTTILHLSENLLYTFSLATLMPYTRLTQLNLDRAELTK-LQ----------- 71 (290)
T ss_dssp EECSTTCCEEECTTSCCSSCCSCCC--TTCCEEECTTSCCSEEEGGGGTTCTTCCEEECTTSCCCE-EE-----------
T ss_pred ccccCCccEEECCCCCCCcCCCCCC--CCCCEEEcCCCcCCccCHHHhhcCCCCCEEECCCCccCc-cc-----------
Confidence 5677888999999988888887664 68889999998887764 567888889999888887642 11
Q ss_pred eecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEeccc
Q 010381 309 VSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTE 388 (512)
Q Consensus 309 l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~ 388 (512)
. .+.+++|+.|+++++. ... +|. .+..+ ++|+.|++++|.
T Consensus 72 -----------~-~~~l~~L~~L~Ls~N~---l~~--------------------l~~----~~~~l-~~L~~L~l~~N~ 111 (290)
T 1p9a_G 72 -----------V-DGTLPVLGTLDLSHNQ---LQS--------------------LPL----LGQTL-PALTVLDVSFNR 111 (290)
T ss_dssp -----------C-CSCCTTCCEEECCSSC---CSS--------------------CCC----CTTTC-TTCCEEECCSSC
T ss_pred -----------C-CCCCCcCCEEECCCCc---CCc--------------------Cch----hhccC-CCCCEEECCCCc
Confidence 1 1455666666666651 111 232 44556 677777777777
Q ss_pred CCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeC-CCCccccceeeecCCcccCCC
Q 010381 389 LKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMG-AGAMPKLESLIVDPCAYLRKL 467 (512)
Q Consensus 389 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~-~~~l~~L~~L~l~~c~~l~~l 467 (512)
+++..+..+..+++|++|++++|.+....... +..+++|+.|++++| .++.+|.. +..+++|+.|++++|. ++.+
T Consensus 112 l~~l~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~L~~N-~l~~l~~~~~~~l~~L~~L~L~~N~-l~~i 187 (290)
T 1p9a_G 112 LTSLPLGALRGLGELQELYLKGNELKTLPPGL--LTPTPKLEKLSLANN-NLTELPAGLLNGLENLDTLLLQENS-LYTI 187 (290)
T ss_dssp CCCCCSSTTTTCTTCCEEECTTSCCCCCCTTT--TTTCTTCCEEECTTS-CCSCCCTTTTTTCTTCCEEECCSSC-CCCC
T ss_pred CcccCHHHHcCCCCCCEEECCCCCCCccChhh--cccccCCCEEECCCC-cCCccCHHHhcCcCCCCEEECCCCc-CCcc
Confidence 76655666777777777777777665433221 456677777777773 55666543 3567777777777776 5567
Q ss_pred CcccCCCCCCcEEEccCCh
Q 010381 468 PEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 468 p~~~~~l~~L~~L~l~~~~ 486 (512)
|..+...++|+.+++++||
T Consensus 188 p~~~~~~~~L~~l~L~~Np 206 (290)
T 1p9a_G 188 PKGFFGSHLLPFAFLHGNP 206 (290)
T ss_dssp CTTTTTTCCCSEEECCSCC
T ss_pred ChhhcccccCCeEEeCCCC
Confidence 7777777777777777765
No 81
>2a5y_B CED-4; apoptosis; HET: ATP; 2.60A {Caenorhabditis elegans} SCOP: a.4.5.80 a.77.1.3 c.37.1.20 PDB: 3lqq_A* 3lqr_A*
Probab=99.76 E-value=1.1e-19 Score=189.28 Aligned_cols=133 Identities=19% Similarity=0.193 Sum_probs=104.0
Q ss_pred CCCCCCchhHHHHhhhcccCCCHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCcchhhHhh-----------
Q 010381 1 MENGEKIRLDSVLIGGPLIRLKHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPFHLKICCI----------- 69 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~~~~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl----------- 69 (512)
|++|+|+||||+++|+.|+... .+|.+.+....+.. .. ..+.++|+ +||++||+++|.||+
T Consensus 323 ~~~c~GlPLAl~~~g~~l~~~~-w~~~~~l~~~l~~~--~~---~~i~~~l~--~Sy~~L~~~lk~~f~~Ls~~er~l~~ 394 (549)
T 2a5y_B 323 IELSSGNPATLMMFFKSCEPKT-FEKMAQLNNKLESR--GL---VGVECITP--YSYKSLAMALQRCVEVLSDEDRSALA 394 (549)
T ss_dssp HHHHTTCHHHHHHHHTTCCSSS-HHHHHHHHHHHHHH--CS---STTCCCSS--SSSSSHHHHHHHHHHTSCHHHHHHTT
T ss_pred HHHhCCChHHHHHHHHHhccch-HHHHHHhHHHhhcc--cH---HHHHHHHh--cccccccHHHHHHHhccchhhhhHhh
Confidence 4689999999999999999222 23333333322221 11 67899999 999999999999999
Q ss_pred hhcccCCCceeCHHHHHHHHHHc--CCCC-----CChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHH
Q 010381 70 YLCVFPPSIEISTRQLYQLWEAE--GFIP-----YNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFL 142 (512)
Q Consensus 70 ~~a~fp~~~~i~~~~Li~~w~~~--g~~~-----~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~ 142 (512)
|||+||+++.|+ +++|+|+ ||+. ...++.++ +|++|++++|++....+ ....|+|||+++++++.
T Consensus 395 ~ls~fp~~~~i~----i~~w~a~~~G~i~~~~~~~~~~~~~~-~l~~L~~rsLl~~~~~~---~~~~~~mHdlv~~~a~~ 466 (549)
T 2a5y_B 395 FAVVMPPGVDIP----VKLWSCVIPVDICSNEEEQLDDEVAD-RLKRLSKRGALLSGKRM---PVLTFKIDHIIHMFLKH 466 (549)
T ss_dssp GGGSSCTTCCEE----HHHHHHHSCC-------CCCTHHHHH-HHHHTTTBSSCSEEECS---SSCEEECCHHHHHHHHT
T ss_pred heeeeCCCCeee----eeeeeeeccceeccCCCCCCHHHHHH-HHHHHHHcCCeeEecCC---CceEEEeChHHHHHHHH
Confidence 999999999999 8999999 9996 23677777 99999999999988643 33679999999999999
Q ss_pred hhhhcCc
Q 010381 143 VAEKTEF 149 (512)
Q Consensus 143 ~~~~~~~ 149 (512)
++.++++
T Consensus 467 ~~~~~~~ 473 (549)
T 2a5y_B 467 VVDAQTI 473 (549)
T ss_dssp TSCTHHH
T ss_pred HHHHHHH
Confidence 8876543
No 82
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.76 E-value=2e-20 Score=186.88 Aligned_cols=261 Identities=13% Similarity=0.078 Sum_probs=176.4
Q ss_pred hHHhcCCCeeEEEEecCCcCC-c----cCccccCccccCeeeecCCCCc----ccChhh-------hcCcCCcEEecCCc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLD-Q----FPPGLENLFLLKYLKLNIPSLK----CLPSQL-------CTLLNLQTLQMPSS 267 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~-~----lp~~l~~l~~L~~L~l~~~~i~----~lp~~~-------~~l~~L~~L~L~~~ 267 (512)
..+ ..+++|++|++++|.++ . ++..+..+++|++|++++|.+. .+|..+ ..+++|++|+|++|
T Consensus 26 ~~l-~~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n 104 (386)
T 2ca6_A 26 AVL-LEDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDN 104 (386)
T ss_dssp HHH-HHCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSC
T ss_pred HHH-hcCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCC
Confidence 444 77888999999988877 2 4455778888999988886443 344444 67888888888888
Q ss_pred cccc-----cchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCC---------CCCCeEEE
Q 010381 268 YIDQ-----SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRL---------PNIQTLRI 333 (512)
Q Consensus 268 ~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l---------~~L~~L~l 333 (512)
.++. +|..+.++++|++|++++|.+....+ ..++..+..+ ++|++|++
T Consensus 105 ~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~------------------~~l~~~l~~l~~~~~~~~~~~L~~L~L 166 (386)
T 2ca6_A 105 AFGPTAQEPLIDFLSKHTPLEHLYLHNNGLGPQAG------------------AKIARALQELAVNKKAKNAPPLRSIIC 166 (386)
T ss_dssp CCCTTTHHHHHHHHHHCTTCCEEECCSSCCHHHHH------------------HHHHHHHHHHHHHHHHHTCCCCCEEEC
T ss_pred cCCHHHHHHHHHHHHhCCCCCEEECcCCCCCHHHH------------------HHHHHHHHHHhhhhhcccCCCCcEEEC
Confidence 7765 67778888888888888887632111 1222334444 89999999
Q ss_pred eccch--hhhhhHHHhccCCCCCcEEEeccCCCCC--Cccc---CcCCCCCCccEEEEecccCC----CCCCCCCCCCcc
Q 010381 334 SGDLS--YYQSRVSKSLCKLQKLEWLKLVNESKPS--RMVL---SEYQFPPSLTHLSLSNTELK----EDPMPTLEKLPY 402 (512)
Q Consensus 334 ~~~~~--~~~~~l~~~l~~l~~L~~L~l~~~~~p~--L~~l---~~~~lp~~L~~L~L~~~~~~----~~~~~~l~~l~~ 402 (512)
++|.- .....+...+..+++|+.|++++|.+.. +..+ .+..+ ++|+.|+|++|.++ ...+..+..+++
T Consensus 167 ~~n~l~~~~~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~-~~L~~L~Ls~n~l~~~g~~~l~~~l~~~~~ 245 (386)
T 2ca6_A 167 GRNRLENGSMKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYC-QELKVLDLQDNTFTHLGSSALAIALKSWPN 245 (386)
T ss_dssp CSSCCTGGGHHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGC-TTCCEEECCSSCCHHHHHHHHHHHGGGCTT
T ss_pred CCCCCCcHHHHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcC-CCccEEECcCCCCCcHHHHHHHHHHccCCC
Confidence 98841 1223334677888899999999987641 0001 45567 89999999999875 344556788899
Q ss_pred cceeEEEcccccCcee----eeeCCCCCccccEEEecCCCCcce-----eeeCC-CCccccceeeecCCcccCCCC--cc
Q 010381 403 VQVLKLKQNSYLGRKL----ACVGSGGFPELKVLHLKSMYWLDE-----WTMGA-GAMPKLESLIVDPCAYLRKLP--EE 470 (512)
Q Consensus 403 L~~L~l~~~~~~~~~~----~~~~~~~~~~L~~L~L~~~~~l~~-----l~~~~-~~l~~L~~L~l~~c~~l~~lp--~~ 470 (512)
|++|++++|.+.+... .....+.+++|++|+|++|. ++. +|..+ ..+++|+.|++++|+.....+ ..
T Consensus 246 L~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~-i~~~g~~~l~~~l~~~l~~L~~L~l~~N~l~~~~~~~~~ 324 (386)
T 2ca6_A 246 LRELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNE-IELDAVRTLKTVIDEKMPDLLFLELNGNRFSEEDDVVDE 324 (386)
T ss_dssp CCEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSC-CBHHHHHHHHHHHHHHCTTCCEEECTTSBSCTTSHHHHH
T ss_pred cCEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCc-CCHHHHHHHHHHHHhcCCCceEEEccCCcCCcchhHHHH
Confidence 9999999888765421 11001447899999999864 443 66655 558999999999998655443 11
Q ss_pred -cCCCCCCcEEEccCC
Q 010381 471 -LWCIQSLRKLDLHWP 485 (512)
Q Consensus 471 -~~~l~~L~~L~l~~~ 485 (512)
...+++++..++...
T Consensus 325 l~~~l~~~~~~~l~~~ 340 (386)
T 2ca6_A 325 IREVFSTRGRGELDEL 340 (386)
T ss_dssp HHHHHHHHTCCEECCC
T ss_pred HHHHhhhcCcchhhhc
Confidence 123455555555443
No 83
>1h6u_A Internalin H; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.8A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1
Probab=99.76 E-value=3.2e-18 Score=165.17 Aligned_cols=192 Identities=20% Similarity=0.227 Sum_probs=146.1
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQ 260 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~ 260 (512)
.+++|++|.+.++.+. .++.+ ..+++|++|++++|.++.++. +..+++|++|++++|.++.++ .++.+++|+
T Consensus 39 ~l~~L~~L~l~~~~i~-----~l~~~-~~l~~L~~L~L~~n~i~~~~~-~~~l~~L~~L~L~~n~l~~~~-~~~~l~~L~ 110 (308)
T 1h6u_A 39 DLDGITTLSAFGTGVT-----TIEGV-QYLNNLIGLELKDNQITDLAP-LKNLTKITELELSGNPLKNVS-AIAGLQSIK 110 (308)
T ss_dssp HHHTCCEEECTTSCCC-----CCTTG-GGCTTCCEEECCSSCCCCCGG-GTTCCSCCEEECCSCCCSCCG-GGTTCTTCC
T ss_pred HcCCcCEEEeeCCCcc-----Cchhh-hccCCCCEEEccCCcCCCChh-HccCCCCCEEEccCCcCCCch-hhcCCCCCC
Confidence 4677888888877665 33445 778888888888888887766 788888888888888888775 677888888
Q ss_pred EEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchh
Q 010381 261 TLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSY 339 (512)
Q Consensus 261 ~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~ 339 (512)
+|++++|.+..++. +..+++|++|++++|.+.+. +. ++.+++|+.|++++ .+...+. +..+++|+.|++++|.
T Consensus 111 ~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~-~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~l~~n~-- 184 (308)
T 1h6u_A 111 TLDLTSTQITDVTP-LAGLSNLQVLYLDLNQITNI-SP-LAGLTNLQYLSIGNAQVSDLTP-LANLSKLTTLKADDNK-- 184 (308)
T ss_dssp EEECTTSCCCCCGG-GTTCTTCCEEECCSSCCCCC-GG-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSC--
T ss_pred EEECCCCCCCCchh-hcCCCCCCEEECCCCccCcC-cc-ccCCCCccEEEccCCcCCCChh-hcCCCCCCEEECCCCc--
Confidence 88888888877765 77888888888888887543 32 77888888888875 3233333 8888999999998883
Q ss_pred hhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCC
Q 010381 340 YQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKE 391 (512)
Q Consensus 340 ~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~ 391 (512)
. ..++. +..+++|+.|++++|.+..+. .+..+ ++|+.|++++|.+++
T Consensus 185 l-~~~~~-l~~l~~L~~L~L~~N~l~~~~--~l~~l-~~L~~L~l~~N~i~~ 231 (308)
T 1h6u_A 185 I-SDISP-LASLPNLIEVHLKNNQISDVS--PLANT-SNLFIVTLTNQTITN 231 (308)
T ss_dssp C-CCCGG-GGGCTTCCEEECTTSCCCBCG--GGTTC-TTCCEEEEEEEEEEC
T ss_pred c-CcChh-hcCCCCCCEEEccCCccCccc--cccCC-CCCCEEEccCCeeec
Confidence 2 22222 778899999999998876554 45678 999999999998865
No 84
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.75 E-value=6.1e-18 Score=157.07 Aligned_cols=204 Identities=20% Similarity=0.249 Sum_probs=139.0
Q ss_pred CCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCcc-ccccch-hhhccccCceeecCC-cccCCCCCC
Q 010381 223 LDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSY-IDQSPE-DIWMMQKLMHLNFGS-ITLPAPPTN 298 (512)
Q Consensus 223 l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~-~~~lp~-~i~~l~~L~~L~l~~-~~~~~~~p~ 298 (512)
++.+|. +. .+|++|++++|.++.+|. .++++++|++|++++|. ++.++. .+.++++|++|++++ |.+..
T Consensus 23 l~~ip~-~~--~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~---- 95 (239)
T 2xwt_C 23 IQRIPS-LP--PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTY---- 95 (239)
T ss_dssp CSSCCC-CC--TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCE----
T ss_pred ccccCC-CC--CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeE----
Confidence 556665 33 267777777777776655 46667777777777774 666664 456677777777766 55421
Q ss_pred CCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCC
Q 010381 299 YSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPS 378 (512)
Q Consensus 299 ~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~ 378 (512)
..+..+..+++|+.|+++++ .+..+. .+..+ ++
T Consensus 96 ------------------i~~~~f~~l~~L~~L~l~~n--------------------------~l~~lp--~~~~l-~~ 128 (239)
T 2xwt_C 96 ------------------IDPDALKELPLLKFLGIFNT--------------------------GLKMFP--DLTKV-YS 128 (239)
T ss_dssp ------------------ECTTSEECCTTCCEEEEEEE--------------------------CCCSCC--CCTTC-CB
T ss_pred ------------------cCHHHhCCCCCCCEEeCCCC--------------------------CCcccc--ccccc-cc
Confidence 11223455666777777766 211111 12233 44
Q ss_pred cc---EEEEecc-cCCCCCCCCCCCCcccc-eeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCc-c
Q 010381 379 LT---HLSLSNT-ELKEDPMPTLEKLPYVQ-VLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAM-P 451 (512)
Q Consensus 379 L~---~L~L~~~-~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l-~ 451 (512)
|+ .|++++| .+....+..+..+++|+ +|++++|.+. ..+... +.. ++|+.|++++|..++.++ ..+..+ +
T Consensus 129 L~~L~~L~l~~N~~l~~i~~~~~~~l~~L~~~L~l~~n~l~-~i~~~~-~~~-~~L~~L~L~~n~~l~~i~~~~~~~l~~ 205 (239)
T 2xwt_C 129 TDIFFILEITDNPYMTSIPVNAFQGLCNETLTLKLYNNGFT-SVQGYA-FNG-TKLDAVYLNKNKYLTVIDKDAFGGVYS 205 (239)
T ss_dssp CCSEEEEEEESCTTCCEECTTTTTTTBSSEEEEECCSCCCC-EECTTT-TTT-CEEEEEECTTCTTCCEECTTTTTTCSB
T ss_pred cccccEEECCCCcchhhcCcccccchhcceeEEEcCCCCCc-ccCHhh-cCC-CCCCEEEcCCCCCcccCCHHHhhcccc
Confidence 44 9999999 88766667789999999 9999988876 333322 334 799999999965688776 456778 9
Q ss_pred ccceeeecCCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 452 KLESLIVDPCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 452 ~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
+|+.|++++|. ++.+|.. .+++|+.|++.++.
T Consensus 206 ~L~~L~l~~N~-l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 206 GPSLLDVSQTS-VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCSEEECTTCC-CCCCCCT--TCTTCSEEECTTC-
T ss_pred CCcEEECCCCc-cccCChh--HhccCceeeccCcc
Confidence 99999999987 5677765 78999999999875
No 85
>2ca6_A RAN GTPase-activating protein 1; GAP, GTPase activation, hemihedral twinning, leucine-rich repeat protein, LRR, merohedral twinning; 2.2A {Schizosaccharomyces pombe} SCOP: c.10.1.2 PDB: 1k5g_C* 1k5d_C 1yrg_A
Probab=99.75 E-value=5.7e-20 Score=183.59 Aligned_cols=256 Identities=14% Similarity=0.083 Sum_probs=171.7
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC----ccCccc-------cCccccCeeeecCCCCcc-
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD----QFPPGL-------ENLFLLKYLKLNIPSLKC- 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~----~lp~~l-------~~l~~L~~L~l~~~~i~~- 248 (512)
.+++|++|.+.+|.+.......+...+..+++|++|++++|.+. .+|..+ ..+++|++|++++|.++.
T Consensus 30 ~~~~L~~L~L~~n~i~~~~~~~l~~~l~~~~~L~~L~Ls~~~~~~l~~~~~~~~~~l~~~l~~~~~L~~L~Ls~n~l~~~ 109 (386)
T 2ca6_A 30 EDDSVKEIVLSGNTIGTEAARWLSENIASKKDLEIAEFSDIFTGRVKDEIPEALRLLLQALLKCPKLHTVRLSDNAFGPT 109 (386)
T ss_dssp HCSCCCEEECTTSEECHHHHHHHHHTTTTCTTCCEEECCSCCTTSCGGGSHHHHHHHHHHHTTCTTCCEEECCSCCCCTT
T ss_pred cCCCccEEECCCCCCCHHHHHHHHHHHHhCCCccEEeCcccccCccccchhHHHHHHHHHHhhCCcccEEECCCCcCCHH
Confidence 67889999998887764222234333378889999999887543 344444 678899999999988875
Q ss_pred ----cChhhhcCcCCcEEecCCccccc-----cchhhhcc---------ccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 249 ----LPSQLCTLLNLQTLQMPSSYIDQ-----SPEDIWMM---------QKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 249 ----lp~~~~~l~~L~~L~L~~~~~~~-----lp~~i~~l---------~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
+|..+..+++|++|+|++|.++. ++..+..+ ++|++|++++|.+....
T Consensus 110 ~~~~l~~~l~~~~~L~~L~L~~n~l~~~~~~~l~~~l~~l~~~~~~~~~~~L~~L~L~~n~l~~~~-------------- 175 (386)
T 2ca6_A 110 AQEPLIDFLSKHTPLEHLYLHNNGLGPQAGAKIARALQELAVNKKAKNAPPLRSIICGRNRLENGS-------------- 175 (386)
T ss_dssp THHHHHHHHHHCTTCCEEECCSSCCHHHHHHHHHHHHHHHHHHHHHHTCCCCCEEECCSSCCTGGG--------------
T ss_pred HHHHHHHHHHhCCCCCEEECcCCCCCHHHHHHHHHHHHHHhhhhhcccCCCCcEEECCCCCCCcHH--------------
Confidence 77788888999999999987753 33334445 88888888888764100
Q ss_pred cCCCCccCchhcCCCCCCCeEEEeccchh--hhhhHHH-hccCCCCCcEEEeccCCC--------CCCcccCcCCCCCCc
Q 010381 311 ALHPISCTPDILGRLPNIQTLRISGDLSY--YQSRVSK-SLCKLQKLEWLKLVNESK--------PSRMVLSEYQFPPSL 379 (512)
Q Consensus 311 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~--~~~~l~~-~l~~l~~L~~L~l~~~~~--------p~L~~l~~~~lp~~L 379 (512)
+..+...+..+++|++|++++|.-. ....+.. .+..+++|+.|++++|.+ |. .+..+ ++|
T Consensus 176 ----~~~l~~~l~~~~~L~~L~L~~n~l~~~g~~~l~~~~l~~~~~L~~L~Ls~n~l~~~g~~~l~~----~l~~~-~~L 246 (386)
T 2ca6_A 176 ----MKEWAKTFQSHRLLHTVKMVQNGIRPEGIEHLLLEGLAYCQELKVLDLQDNTFTHLGSSALAI----ALKSW-PNL 246 (386)
T ss_dssp ----HHHHHHHHHHCTTCCEEECCSSCCCHHHHHHHHHTTGGGCTTCCEEECCSSCCHHHHHHHHHH----HGGGC-TTC
T ss_pred ----HHHHHHHHHhCCCcCEEECcCCCCCHhHHHHHHHHHhhcCCCccEEECcCCCCCcHHHHHHHH----HHccC-CCc
Confidence 0112246677888999999888411 1112333 778888999999998876 23 45677 889
Q ss_pred cEEEEecccCCCC----CCCCC--CCCcccceeEEEcccccCc----eeeeeCCCCCccccEEEecCCCCcceee---eC
Q 010381 380 THLSLSNTELKED----PMPTL--EKLPYVQVLKLKQNSYLGR----KLACVGSGGFPELKVLHLKSMYWLDEWT---MG 446 (512)
Q Consensus 380 ~~L~L~~~~~~~~----~~~~l--~~l~~L~~L~l~~~~~~~~----~~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~ 446 (512)
++|+|++|.+++. .+..+ +.+++|++|++++|.+.+. .+... ..++++|++|++++|......+ ..
T Consensus 247 ~~L~L~~n~i~~~~~~~l~~~l~~~~~~~L~~L~L~~n~i~~~g~~~l~~~l-~~~l~~L~~L~l~~N~l~~~~~~~~~l 325 (386)
T 2ca6_A 247 RELGLNDCLLSARGAAAVVDAFSKLENIGLQTLRLQYNEIELDAVRTLKTVI-DEKMPDLLFLELNGNRFSEEDDVVDEI 325 (386)
T ss_dssp CEEECTTCCCCHHHHHHHHHHHHTCSSCCCCEEECCSSCCBHHHHHHHHHHH-HHHCTTCCEEECTTSBSCTTSHHHHHH
T ss_pred CEEECCCCCCchhhHHHHHHHHhhccCCCeEEEECcCCcCCHHHHHHHHHHH-HhcCCCceEEEccCCcCCcchhHHHHH
Confidence 9999999887653 23344 3488899999998888762 33221 2457899999998865333221 11
Q ss_pred CCCccccceeeecC
Q 010381 447 AGAMPKLESLIVDP 460 (512)
Q Consensus 447 ~~~l~~L~~L~l~~ 460 (512)
...+++++.+.+..
T Consensus 326 ~~~l~~~~~~~l~~ 339 (386)
T 2ca6_A 326 REVFSTRGRGELDE 339 (386)
T ss_dssp HHHHHHHTCCEECC
T ss_pred HHHhhhcCcchhhh
Confidence 23456666555544
No 86
>2ast_B S-phase kinase-associated protein 2; SCF-substrate complex, LRR, cell cycle, protein turnover COM ligase-ligase inhibitor complex; HET: TPO; 2.30A {Homo sapiens} SCOP: a.158.1.1 c.10.1.3 PDB: 2ass_B 1fqv_A* 1fs2_A
Probab=99.75 E-value=5.2e-20 Score=180.27 Aligned_cols=247 Identities=18% Similarity=0.182 Sum_probs=179.6
Q ss_pred cCCCeeEEEEecCCcCCccCccccCc--cccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc--cchhhhccccCc
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENL--FLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ--SPEDIWMMQKLM 283 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l--~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~--lp~~i~~l~~L~ 283 (512)
.....++.++++++.+. +..+..+ .++++|+++++.+...+..+..+++|++|++++|.+.. +|..+..+++|+
T Consensus 44 ~~~~~~~~l~l~~~~~~--~~~~~~~~~~~l~~L~l~~n~l~~~~~~~~~~~~L~~L~L~~~~l~~~~~~~~~~~~~~L~ 121 (336)
T 2ast_B 44 SDESLWQTLDLTGKNLH--PDVTGRLLSQGVIAFRCPRSFMDQPLAEHFSPFRVQHMDLSNSVIEVSTLHGILSQCSKLQ 121 (336)
T ss_dssp TCSTTSSEEECTTCBCC--HHHHHHHHHTTCSEEECTTCEECSCCCSCCCCBCCCEEECTTCEECHHHHHHHHTTBCCCS
T ss_pred cCchhheeeccccccCC--HHHHHhhhhccceEEEcCCccccccchhhccCCCCCEEEccCCCcCHHHHHHHHhhCCCCC
Confidence 33445788888888776 3455666 78999999999888666667789999999999997653 777788999999
Q ss_pred eeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC-
Q 010381 284 HLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE- 362 (512)
Q Consensus 284 ~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~- 362 (512)
+|++++|.+. ...+..++.+++|++|++++|.......++..+..+++|+.|++++|
T Consensus 122 ~L~L~~~~l~----------------------~~~~~~l~~~~~L~~L~L~~~~~l~~~~l~~~~~~~~~L~~L~l~~~~ 179 (336)
T 2ast_B 122 NLSLEGLRLS----------------------DPIVNTLAKNSNLVRLNLSGCSGFSEFALQTLLSSCSRLDELNLSWCF 179 (336)
T ss_dssp EEECTTCBCC----------------------HHHHHHHTTCTTCSEEECTTCBSCCHHHHHHHHHHCTTCCEEECCCCT
T ss_pred EEeCcCcccC----------------------HHHHHHHhcCCCCCEEECCCCCCCCHHHHHHHHhcCCCCCEEcCCCCC
Confidence 9999988764 44566677888999999988831223357777889999999999998
Q ss_pred CCCC--CcccCcCCCCC-CccEEEEecc--cCC-CCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCCCccccEEEec
Q 010381 363 SKPS--RMVLSEYQFPP-SLTHLSLSNT--ELK-EDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGGFPELKVLHLK 435 (512)
Q Consensus 363 ~~p~--L~~l~~~~lp~-~L~~L~L~~~--~~~-~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~~~L~~L~L~ 435 (512)
.+.. +.. .+..+ + +|++|++++| .++ ...+..+..+++|++|++++|. +.+..+.. +..+++|++|+++
T Consensus 180 ~l~~~~~~~-~~~~l-~~~L~~L~l~~~~~~~~~~~l~~~~~~~~~L~~L~l~~~~~l~~~~~~~--l~~l~~L~~L~l~ 255 (336)
T 2ast_B 180 DFTEKHVQV-AVAHV-SETITQLNLSGYRKNLQKSDLSTLVRRCPNLVHLDLSDSVMLKNDCFQE--FFQLNYLQHLSLS 255 (336)
T ss_dssp TCCHHHHHH-HHHHS-CTTCCEEECCSCGGGSCHHHHHHHHHHCTTCSEEECTTCTTCCGGGGGG--GGGCTTCCEEECT
T ss_pred CcChHHHHH-HHHhc-ccCCCEEEeCCCcccCCHHHHHHHHhhCCCCCEEeCCCCCcCCHHHHHH--HhCCCCCCEeeCC
Confidence 6542 000 35677 7 9999999999 444 2334456789999999999998 55554443 5778999999999
Q ss_pred CCCCcc-eeeeCCCCccccceeeecCCcccCCCCcccCCC-CCCcEEEccCCh
Q 010381 436 SMYWLD-EWTMGAGAMPKLESLIVDPCAYLRKLPEELWCI-QSLRKLDLHWPQ 486 (512)
Q Consensus 436 ~~~~l~-~l~~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l-~~L~~L~l~~~~ 486 (512)
+|..+. .....++.+++|+.|++++| +.. ..+..+ .+|+.|++++|.
T Consensus 256 ~~~~~~~~~~~~l~~~~~L~~L~l~~~--i~~--~~~~~l~~~l~~L~l~~n~ 304 (336)
T 2ast_B 256 RCYDIIPETLLELGEIPTLKTLQVFGI--VPD--GTLQLLKEALPHLQINCSH 304 (336)
T ss_dssp TCTTCCGGGGGGGGGCTTCCEEECTTS--SCT--TCHHHHHHHSTTSEESCCC
T ss_pred CCCCCCHHHHHHHhcCCCCCEEeccCc--cCH--HHHHHHHhhCcceEEeccc
Confidence 986443 11224678999999999999 221 122223 235555677665
No 87
>2o6q_A Variable lymphocyte receptor A; leucine-rich repeat protein, LRR, immune system; 2.50A {Eptatretus burgeri}
Probab=99.74 E-value=1.8e-17 Score=156.86 Aligned_cols=197 Identities=21% Similarity=0.254 Sum_probs=115.1
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+.++++++++.++.+|..+. ++|++|++++|.+..+|. .+.++++|++|++++|.+.. +|
T Consensus 17 ~~~~l~~~~~~l~~ip~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~-i~---------------- 77 (270)
T 2o6q_A 17 NKNSVDCSSKKLTAIPSNIP--ADTKKLDLQSNKLSSLPSKAFHRLTKLRLLYLNDNKLQT-LP---------------- 77 (270)
T ss_dssp TTTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCSCCCTTSSSSCTTCCEEECCSSCCSC-CC----------------
T ss_pred CCCEEEccCCCCCccCCCCC--CCCCEEECcCCCCCeeCHHHhcCCCCCCEEECCCCccCe-eC----------------
Confidence 47788888888888876554 678888888887777764 57778888888888777641 11
Q ss_pred CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCC
Q 010381 314 PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDP 393 (512)
Q Consensus 314 ~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~ 393 (512)
+..+..+++|++|+++++. .....+. .+..+ ++|++|++++|.++...
T Consensus 78 -----~~~~~~l~~L~~L~l~~n~--l~~~~~~------------------------~~~~l-~~L~~L~l~~n~l~~~~ 125 (270)
T 2o6q_A 78 -----AGIFKELKNLETLWVTDNK--LQALPIG------------------------VFDQL-VNLAELRLDRNQLKSLP 125 (270)
T ss_dssp -----TTTTSSCTTCCEEECCSSC--CCCCCTT------------------------TTTTC-SSCCEEECCSSCCCCCC
T ss_pred -----hhhhcCCCCCCEEECCCCc--CCcCCHh------------------------Hcccc-cCCCEEECCCCccCeeC
Confidence 1224567777888887762 2111112 23344 55555555555555544
Q ss_pred CCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeee-CCCCccccceeeecCCcccCCCCc-cc
Q 010381 394 MPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTM-GAGAMPKLESLIVDPCAYLRKLPE-EL 471 (512)
Q Consensus 394 ~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~-~~ 471 (512)
+..++.+++|++|++++|.+.+..... +..+++|+.|++++| .++.++. .+..+++|+.|++++|. ++.+|. .+
T Consensus 126 ~~~~~~l~~L~~L~Ls~n~l~~~~~~~--~~~l~~L~~L~L~~n-~l~~~~~~~~~~l~~L~~L~L~~N~-l~~~~~~~~ 201 (270)
T 2o6q_A 126 PRVFDSLTKLTYLSLGYNELQSLPKGV--FDKLTSLKELRLYNN-QLKRVPEGAFDKLTELKTLKLDNNQ-LKRVPEGAF 201 (270)
T ss_dssp TTTTTTCTTCCEEECCSSCCCCCCTTT--TTTCTTCCEEECCSS-CCSCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTT
T ss_pred HHHhCcCcCCCEEECCCCcCCccCHhH--ccCCcccceeEecCC-cCcEeChhHhccCCCcCEEECCCCc-CCcCCHHHh
Confidence 445555666666666655554322211 345566666666653 3444432 34555666666666664 333333 35
Q ss_pred CCCCCCcEEEccCCh
Q 010381 472 WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 472 ~~l~~L~~L~l~~~~ 486 (512)
..+++|+.|++++||
T Consensus 202 ~~l~~L~~L~l~~N~ 216 (270)
T 2o6q_A 202 DSLEKLKMLQLQENP 216 (270)
T ss_dssp TTCTTCCEEECCSSC
T ss_pred ccccCCCEEEecCCC
Confidence 556666666666654
No 88
>2xwt_C Thyrotropin receptor; signaling protein-immune system complex, GPCR, graves' disea autoimmunity, receptor-autoantibody complex; HET: NAG BMA MAN; 1.90A {Homo sapiens} PDB: 3g04_C*
Probab=99.73 E-value=5.2e-18 Score=157.53 Aligned_cols=196 Identities=15% Similarity=0.146 Sum_probs=137.2
Q ss_pred CeeEEEEecCCcCCccCc-cccCccccCeeeecCCC-CcccCh-hhhcCcCCcEEecCC-ccccccch-hhhccccCcee
Q 010381 211 KYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPS-LKCLPS-QLCTLLNLQTLQMPS-SYIDQSPE-DIWMMQKLMHL 285 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~-i~~lp~-~~~~l~~L~~L~L~~-~~~~~lp~-~i~~l~~L~~L 285 (512)
+.|++|++++|.++.+|. .++.+++|++|++++|. ++.+|. .++++++|++|++++ |.++.+|. .+.++++|++|
T Consensus 31 ~~l~~L~l~~n~l~~i~~~~~~~l~~L~~L~l~~n~~l~~i~~~~f~~l~~L~~L~l~~~n~l~~i~~~~f~~l~~L~~L 110 (239)
T 2xwt_C 31 PSTQTLKLIETHLRTIPSHAFSNLPNISRIYVSIDVTLQQLESHSFYNLSKVTHIEIRNTRNLTYIDPDALKELPLLKFL 110 (239)
T ss_dssp TTCCEEEEESCCCSEECTTTTTTCTTCCEEEEECCSSCCEECTTTEESCTTCCEEEEEEETTCCEECTTSEECCTTCCEE
T ss_pred CcccEEEEeCCcceEECHHHccCCCCCcEEeCCCCCCcceeCHhHcCCCcCCcEEECCCCCCeeEcCHHHhCCCCCCCEE
Confidence 489999999999997775 78999999999999997 987776 688999999999998 79988874 57899999999
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCC---eEEEeccchhhhhhHHHhccCCCCCcEEEeccC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQ---TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE 362 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~---~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~ 362 (512)
++++|.+.+ +|. ++.+++|+ .|+++++. ....++
T Consensus 111 ~l~~n~l~~-lp~-----------------------~~~l~~L~~L~~L~l~~N~--~l~~i~----------------- 147 (239)
T 2xwt_C 111 GIFNTGLKM-FPD-----------------------LTKVYSTDIFFILEITDNP--YMTSIP----------------- 147 (239)
T ss_dssp EEEEECCCS-CCC-----------------------CTTCCBCCSEEEEEEESCT--TCCEEC-----------------
T ss_pred eCCCCCCcc-ccc-----------------------cccccccccccEEECCCCc--chhhcC-----------------
Confidence 999998753 332 33444454 78887761 111111
Q ss_pred CCCCCcccCcCCCCCCcc-EEEEecccCCCCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCCC-ccccEEEecCCCC
Q 010381 363 SKPSRMVLSEYQFPPSLT-HLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGGF-PELKVLHLKSMYW 439 (512)
Q Consensus 363 ~~p~L~~l~~~~lp~~L~-~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~~-~~L~~L~L~~~~~ 439 (512)
+. .+..+ ++|+ .|++++|.++..+...+.. ++|++|++++|. +... +... +.++ ++|+.|++++ +.
T Consensus 148 --~~----~~~~l-~~L~~~L~l~~n~l~~i~~~~~~~-~~L~~L~L~~n~~l~~i-~~~~-~~~l~~~L~~L~l~~-N~ 216 (239)
T 2xwt_C 148 --VN----AFQGL-CNETLTLKLYNNGFTSVQGYAFNG-TKLDAVYLNKNKYLTVI-DKDA-FGGVYSGPSLLDVSQ-TS 216 (239)
T ss_dssp --TT----TTTTT-BSSEEEEECCSCCCCEECTTTTTT-CEEEEEECTTCTTCCEE-CTTT-TTTCSBCCSEEECTT-CC
T ss_pred --cc----cccch-hcceeEEEcCCCCCcccCHhhcCC-CCCCEEEcCCCCCcccC-CHHH-hhccccCCcEEECCC-Cc
Confidence 11 34455 6667 7777777665333333444 677777777774 5432 2222 5666 7778888877 45
Q ss_pred cceeeeCCCCccccceeeecCCc
Q 010381 440 LDEWTMGAGAMPKLESLIVDPCA 462 (512)
Q Consensus 440 l~~l~~~~~~l~~L~~L~l~~c~ 462 (512)
++.+|.. .+++|+.|+++++.
T Consensus 217 l~~l~~~--~~~~L~~L~l~~~~ 237 (239)
T 2xwt_C 217 VTALPSK--GLEHLKELIARNTW 237 (239)
T ss_dssp CCCCCCT--TCTTCSEEECTTC-
T ss_pred cccCChh--HhccCceeeccCcc
Confidence 6666653 67778887777764
No 89
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.73 E-value=6.2e-18 Score=163.48 Aligned_cols=230 Identities=17% Similarity=0.122 Sum_probs=146.6
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCC-ccCccc--cCccccCeeeecCCCCcc-cC----hh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLD-QFPPGL--ENLFLLKYLKLNIPSLKC-LP----SQ 252 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~-~lp~~l--~~l~~L~~L~l~~~~i~~-lp----~~ 252 (512)
....++.+.+.+..........+..+ ..+++|++|++++|.++ ..|..+ ..+++|++|++++|.++. .| ..
T Consensus 62 ~~~~l~~l~l~~~~~~~~~~~~~~~~-~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~ 140 (310)
T 4glp_A 62 KALRVRRLTVGAAQVPAQLLVGALRV-LAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQ 140 (310)
T ss_dssp SSCCCCEEEECSCCCBHHHHHHHHHH-HHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHH
T ss_pred hhcceeEEEEeCCcCCHHHHHHHHHh-cccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHH
Confidence 34456777777666542111122222 23455888888888876 566666 777888888888887773 22 23
Q ss_pred hhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCC--CCCCCCCCCCCCeeecCCCCccCchhcCCCCCCC
Q 010381 253 LCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAP--PTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQ 329 (512)
Q Consensus 253 ~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~--~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~ 329 (512)
+..+++|++|++++|.+..++ ..++.+++|++|++++|.+.+. ++ ....++.+++|+
T Consensus 141 ~~~~~~L~~L~Ls~n~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~--------------------~~~~~~~l~~L~ 200 (310)
T 4glp_A 141 QWLKPGLKVLSIAQAHSPAFSCEQVRAFPALTSLDLSDNPGLGERGLM--------------------AALCPHKFPAIQ 200 (310)
T ss_dssp TTBCSCCCEEEEECCSSCCCCTTSCCCCTTCCEEECCSCTTCHHHHHH--------------------TTSCTTSSCCCC
T ss_pred hhhccCCCEEEeeCCCcchhhHHHhccCCCCCEEECCCCCCccchhhh--------------------HHHhhhcCCCCC
Confidence 345777777777777666554 4566777777777777765321 10 011225667777
Q ss_pred eEEEeccchhhhhhHHH-hccCCCCCcEEEeccCCCCCCcccCcCCC--CCCccEEEEecccCCCCCCCCCCCCccccee
Q 010381 330 TLRISGDLSYYQSRVSK-SLCKLQKLEWLKLVNESKPSRMVLSEYQF--PPSLTHLSLSNTELKEDPMPTLEKLPYVQVL 406 (512)
Q Consensus 330 ~L~l~~~~~~~~~~l~~-~l~~l~~L~~L~l~~~~~p~L~~l~~~~l--p~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L 406 (512)
+|++++|.-......+. .+..+++|+.|++++|.+..+..-.+..+ +++|++|++++|.++ ..|..+. ++|++|
T Consensus 201 ~L~Ls~N~l~~l~~~~~~l~~~l~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~-~lp~~~~--~~L~~L 277 (310)
T 4glp_A 201 NLALRNTGMETPTGVCAALAAAGVQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE-QVPKGLP--AKLRVL 277 (310)
T ss_dssp SCBCCSSCCCCHHHHHHHHHHHTCCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC-SCCSCCC--SCCSCE
T ss_pred EEECCCCCCCchHHHHHHHHhcCCCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC-chhhhhc--CCCCEE
Confidence 77777773111122233 35678899999999987643210023333 169999999999987 4555553 799999
Q ss_pred EEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 407 KLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 407 ~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
++++|.+.+.. . ...+++|+.|++++++
T Consensus 278 ~Ls~N~l~~~~-~---~~~l~~L~~L~L~~N~ 305 (310)
T 4glp_A 278 DLSSNRLNRAP-Q---PDELPEVDNLTLDGNP 305 (310)
T ss_dssp ECCSCCCCSCC-C---TTSCCCCSCEECSSTT
T ss_pred ECCCCcCCCCc-h---hhhCCCccEEECcCCC
Confidence 99999987642 1 4678999999999854
No 90
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.72 E-value=1.7e-18 Score=171.24 Aligned_cols=91 Identities=18% Similarity=0.238 Sum_probs=57.7
Q ss_pred hHHhcCCCeeEEEEecCCcCCccC-----ccccCcc-ccCeeeecCCCCccc-ChhhhcC-----cCCcEEecCCccccc
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFP-----PGLENLF-LLKYLKLNIPSLKCL-PSQLCTL-----LNLQTLQMPSSYIDQ 271 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp-----~~l~~l~-~L~~L~l~~~~i~~l-p~~~~~l-----~~L~~L~L~~~~~~~ 271 (512)
+.+....++|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..++.+ ++|++|++++|.++.
T Consensus 15 ~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~n~l~~ 94 (362)
T 3goz_A 15 EEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPANVTSLNLSGNFLSY 94 (362)
T ss_dssp HHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCCccEEECcCCcCCh
Confidence 555455556777777777776444 4566666 777777777777633 4445543 777777777776654
Q ss_pred cch-h----hhcc-ccCceeecCCcccCC
Q 010381 272 SPE-D----IWMM-QKLMHLNFGSITLPA 294 (512)
Q Consensus 272 lp~-~----i~~l-~~L~~L~l~~~~~~~ 294 (512)
.+. . +..+ ++|++|++++|.+..
T Consensus 95 ~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~ 123 (362)
T 3goz_A 95 KSSDELVKTLAAIPFTITVLDLGWNDFSS 123 (362)
T ss_dssp SCHHHHHHHHHTSCTTCCEEECCSSCGGG
T ss_pred HHHHHHHHHHHhCCCCccEEECcCCcCCc
Confidence 432 2 3333 677777777777653
No 91
>2p1m_B Transport inhibitor response 1 protein; F-BOX, leucine rich repeat, signaling protein; HET: IHP; 1.80A {Arabidopsis thaliana} PDB: 2p1n_B* 2p1o_B* 2p1p_B* 2p1q_B* 3c6n_B* 3c6o_B* 3c6p_B*
Probab=99.72 E-value=6.1e-20 Score=194.04 Aligned_cols=298 Identities=17% Similarity=0.098 Sum_probs=179.0
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCC-cCC--ccCccccCccccCeeeecCCCCcc-----cChh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSA-VLD--QFPPGLENLFLLKYLKLNIPSLKC-----LPSQ 252 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~-~l~--~lp~~l~~l~~L~~L~l~~~~i~~-----lp~~ 252 (512)
.+++|++|.+.++.... ..+..+...+++|++|++++| .++ .++..+..+++|++|++++|.++. ++..
T Consensus 103 ~~~~L~~L~L~~~~~~~---~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~~~~~~~~L~~L~L~~~~i~~~~~~~l~~~ 179 (594)
T 2p1m_B 103 SYTWLEEIRLKRMVVTD---DCLELIAKSFKNFKVLVLSSCEGFSTDGLAAIAATCRNLKELDLRESDVDDVSGHWLSHF 179 (594)
T ss_dssp HCTTCCEEEEESCBCCH---HHHHHHHHHCTTCCEEEEESCEEEEHHHHHHHHHHCTTCCEEECTTCEEECCCGGGGGGS
T ss_pred hCCCCCeEEeeCcEEcH---HHHHHHHHhCCCCcEEeCCCcCCCCHHHHHHHHHhCCCCCEEeCcCCccCCcchHHHHHH
Confidence 57899999999987653 223555346899999999999 465 355656689999999999998663 3333
Q ss_pred hhcCcCCcEEecCCcc--c--cccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC---------------
Q 010381 253 LCTLLNLQTLQMPSSY--I--DQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH--------------- 313 (512)
Q Consensus 253 ~~~l~~L~~L~L~~~~--~--~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~--------------- 313 (512)
...+++|++|++++|. + ..++..+.++++|++|++++|.....+|..+.++++|+.+++..
T Consensus 180 ~~~~~~L~~L~l~~~~~~~~~~~l~~l~~~~~~L~~L~L~~~~~~~~l~~~~~~~~~L~~L~l~~~~~~~~~~~~~~l~~ 259 (594)
T 2p1m_B 180 PDTYTSLVSLNISCLASEVSFSALERLVTRCPNLKSLKLNRAVPLEKLATLLQRAPQLEELGTGGYTAEVRPDVYSGLSV 259 (594)
T ss_dssp CTTCCCCCEEECTTCCSCCCHHHHHHHHHHCTTCCEEECCTTSCHHHHHHHHHHCTTCSEEECSBCCCCCCHHHHHHHHH
T ss_pred hhcCCcCcEEEecccCCcCCHHHHHHHHHhCCCCcEEecCCCCcHHHHHHHHhcCCcceEcccccccCccchhhHHHHHH
Confidence 3467899999999986 2 22333345689999999999843333455555666666665321
Q ss_pred -----------------CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC-----------CCC
Q 010381 314 -----------------PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE-----------SKP 365 (512)
Q Consensus 314 -----------------~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~-----------~~p 365 (512)
....++..+..+++|++|++++|. .....+...+..+++|+.|+++++ .+|
T Consensus 260 ~l~~~~~L~~Ls~~~~~~~~~l~~~~~~~~~L~~L~L~~~~-l~~~~l~~~~~~~~~L~~L~l~~~~~~~~l~~l~~~~~ 338 (594)
T 2p1m_B 260 ALSGCKELRCLSGFWDAVPAYLPAVYSVCSRLTTLNLSYAT-VQSYDLVKLLCQCPKLQRLWVLDYIEDAGLEVLASTCK 338 (594)
T ss_dssp HHHTCTTCCEEECCBTCCGGGGGGGHHHHTTCCEEECTTCC-CCHHHHHHHHTTCTTCCEEEEEGGGHHHHHHHHHHHCT
T ss_pred HHhcCCCcccccCCcccchhhHHHHHHhhCCCCEEEccCCC-CCHHHHHHHHhcCCCcCEEeCcCccCHHHHHHHHHhCC
Confidence 001223333467889999998884 222334555778899999999875 123
Q ss_pred CCcccCc-----------------------CCCCCCccEEEEecccCCCCCCCCCC-CCcccceeEEE--c----ccccC
Q 010381 366 SRMVLSE-----------------------YQFPPSLTHLSLSNTELKEDPMPTLE-KLPYVQVLKLK--Q----NSYLG 415 (512)
Q Consensus 366 ~L~~l~~-----------------------~~lp~~L~~L~L~~~~~~~~~~~~l~-~l~~L~~L~l~--~----~~~~~ 415 (512)
+|+.|.+ ..+ ++|++|.+..+.+++..+..+. .+++|+.|+++ + +.+++
T Consensus 339 ~L~~L~L~~~~~~g~~~~~~l~~~~l~~l~~~~-~~L~~L~~~~~~l~~~~~~~l~~~~~~L~~L~L~~~~~~~~~~l~~ 417 (594)
T 2p1m_B 339 DLRELRVFPSEPFVMEPNVALTEQGLVSVSMGC-PKLESVLYFCRQMTNAALITIARNRPNMTRFRLCIIEPKAPDYLTL 417 (594)
T ss_dssp TCCEEEEECSCTTCSSCSSCCCHHHHHHHHHHC-TTCCEEEEEESCCCHHHHHHHHHHCTTCCEEEEEESSTTCCCTTTC
T ss_pred CCCEEEEecCcccccccCCCCCHHHHHHHHHhc-hhHHHHHHhcCCcCHHHHHHHHhhCCCcceeEeecccCCCcccccC
Confidence 4443322 013 4455554444444332222222 35556666665 2 22221
Q ss_pred ----ceeeeeCCCCCccccEEEecCCCCcc-eeeeCCC-CccccceeeecCCcccCCCCccc-CCCCCCcEEEccCCh
Q 010381 416 ----RKLACVGSGGFPELKVLHLKSMYWLD-EWTMGAG-AMPKLESLIVDPCAYLRKLPEEL-WCIQSLRKLDLHWPQ 486 (512)
Q Consensus 416 ----~~~~~~~~~~~~~L~~L~L~~~~~l~-~l~~~~~-~l~~L~~L~l~~c~~l~~lp~~~-~~l~~L~~L~l~~~~ 486 (512)
..+... +.++++|+.|++++ .++ ..+..++ .+++|+.|++++|......+..+ ..+++|++|++++|+
T Consensus 418 ~~~~~~~~~l-~~~~~~L~~L~L~~--~l~~~~~~~l~~~~~~L~~L~L~~~~i~~~~~~~l~~~~~~L~~L~L~~n~ 492 (594)
T 2p1m_B 418 EPLDIGFGAI-VEHCKDLRRLSLSG--LLTDKVFEYIGTYAKKMEMLSVAFAGDSDLGMHHVLSGCDSLRKLEIRDCP 492 (594)
T ss_dssp CCTHHHHHHH-HHHCTTCCEEECCS--SCCHHHHHHHHHHCTTCCEEEEESCCSSHHHHHHHHHHCTTCCEEEEESCS
T ss_pred CchhhHHHHH-HhhCCCccEEeecC--cccHHHHHHHHHhchhccEeeccCCCCcHHHHHHHHhcCCCcCEEECcCCC
Confidence 011111 23355666666654 222 1111122 37788888888887433222222 568999999999997
No 92
>3goz_A Leucine-rich repeat-containing protein; LEGL7, NESG, LGR148, structural genomics, PSI-2, protein structure initiative; 2.10A {Legionella pneumophila subsp}
Probab=99.71 E-value=4.7e-19 Score=175.28 Aligned_cols=250 Identities=13% Similarity=0.103 Sum_probs=163.3
Q ss_pred EEEecCCcCC-ccCccccCccccCeeeecCCCCcccC-----hhhhcCc-CCcEEecCCcccccc-chhhhcc-----cc
Q 010381 215 VLDLGSAVLD-QFPPGLENLFLLKYLKLNIPSLKCLP-----SQLCTLL-NLQTLQMPSSYIDQS-PEDIWMM-----QK 281 (512)
Q Consensus 215 ~L~l~~~~l~-~lp~~l~~l~~L~~L~l~~~~i~~lp-----~~~~~l~-~L~~L~L~~~~~~~l-p~~i~~l-----~~ 281 (512)
.++++.+.++ .+|..+....+|++|++++|.++..+ ..+..++ +|++|++++|.++.. +..+..+ ++
T Consensus 2 ~~~ls~n~~~~~~~~~~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~ 81 (362)
T 3goz_A 2 NYKLTLHPGSNPVEEFTSIPHGVTSLDLSLNNLYSISTVELIQAFANTPASVTSLNLSGNSLGFKNSDELVQILAAIPAN 81 (362)
T ss_dssp EEECCCCTTCCHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTCCTTCCEEECCSSCGGGSCHHHHHHHHHTSCTT
T ss_pred ccccccccchHHHHHHHhCCCCceEEEccCCCCChHHHHHHHHHHHhCCCceeEEECcCCCCCHHHHHHHHHHHhccCCC
Confidence 3678888888 55666666667999999999999666 5677888 899999999988765 4456554 99
Q ss_pred CceeecCCcccCCCCCCC----CCCC-CCCCeeecCC-CCccC-c----hhcCC-CCCCCeEEEeccc--hhhhhhHHHh
Q 010381 282 LMHLNFGSITLPAPPTNY----SSSL-KNLIFVSALH-PISCT-P----DILGR-LPNIQTLRISGDL--SYYQSRVSKS 347 (512)
Q Consensus 282 L~~L~l~~~~~~~~~p~~----~~~l-~~L~~l~l~~-~~~~~-~----~~l~~-l~~L~~L~l~~~~--~~~~~~l~~~ 347 (512)
|++|++++|.+....+.. +..+ ++|+.|++++ .+... + ..+.. .++|++|++++|. ......++..
T Consensus 82 L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~~~~l~~~ 161 (362)
T 3goz_A 82 VTSLNLSGNFLSYKSSDELVKTLAAIPFTITVLDLGWNDFSSKSSSEFKQAFSNLPASITSLNLRGNDLGIKSSDELIQI 161 (362)
T ss_dssp CCEEECCSSCGGGSCHHHHHHHHHTSCTTCCEEECCSSCGGGSCHHHHHHHHTTSCTTCCEEECTTSCGGGSCHHHHHHH
T ss_pred ccEEECcCCcCChHHHHHHHHHHHhCCCCccEEECcCCcCCcHHHHHHHHHHHhCCCceeEEEccCCcCCHHHHHHHHHH
Confidence 999999999987655543 3333 7788888875 21111 1 22334 3588888888773 1122355666
Q ss_pred ccCCC-CCcEEEeccCCCCCCcc--c--CcCCCCCCccEEEEecccCCCCCC----CCCCC-CcccceeEEEcccccCce
Q 010381 348 LCKLQ-KLEWLKLVNESKPSRMV--L--SEYQFPPSLTHLSLSNTELKEDPM----PTLEK-LPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 348 l~~l~-~L~~L~l~~~~~p~L~~--l--~~~~lp~~L~~L~L~~~~~~~~~~----~~l~~-l~~L~~L~l~~~~~~~~~ 417 (512)
+..++ +|+.|++++|.+..... + .+..+|++|++|+|++|.+.+... ..+.. .++|++|++++|.+.+..
T Consensus 162 l~~~~~~L~~L~Ls~n~l~~~~~~~l~~~l~~~~~~L~~L~Ls~N~i~~~~~~~l~~~l~~~~~~L~~L~Ls~N~l~~~~ 241 (362)
T 3goz_A 162 LAAIPANVNSLNLRGNNLASKNCAELAKFLASIPASVTSLDLSANLLGLKSYAELAYIFSSIPNHVVSLNLCLNCLHGPS 241 (362)
T ss_dssp HHTSCTTCCEEECTTSCGGGSCHHHHHHHHHTSCTTCCEEECTTSCGGGSCHHHHHHHHHHSCTTCCEEECCSSCCCCCC
T ss_pred HhcCCccccEeeecCCCCchhhHHHHHHHHHhCCCCCCEEECCCCCCChhHHHHHHHHHhcCCCCceEEECcCCCCCcHH
Confidence 66665 88888888876532110 0 122342478888888887764322 22333 347888888887776543
Q ss_pred e---eeeCCCCCccccEEEecCCC-------CcceeeeCCCCccccceeeecCCcccC
Q 010381 418 L---ACVGSGGFPELKVLHLKSMY-------WLDEWTMGAGAMPKLESLIVDPCAYLR 465 (512)
Q Consensus 418 ~---~~~~~~~~~~L~~L~L~~~~-------~l~~l~~~~~~l~~L~~L~l~~c~~l~ 465 (512)
. ... ...+++|++|++++|. .+..++..+..+++|+.|++++|+.-.
T Consensus 242 ~~~l~~~-~~~l~~L~~L~L~~n~l~~i~~~~~~~l~~~~~~l~~L~~LdL~~N~l~~ 298 (362)
T 3goz_A 242 LENLKLL-KDSLKHLQTVYLDYDIVKNMSKEQCKALGAAFPNIQKIILVDKNGKEIHP 298 (362)
T ss_dssp HHHHHHT-TTTTTTCSEEEEEHHHHTTCCHHHHHHHHTTSTTCCEEEEECTTSCBCCG
T ss_pred HHHHHHH-HhcCCCccEEEeccCCccccCHHHHHHHHHHhccCCceEEEecCCCcCCC
Confidence 2 122 4667778888887754 022344456677778888888877433
No 93
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.71 E-value=3.8e-17 Score=160.67 Aligned_cols=237 Identities=16% Similarity=0.101 Sum_probs=109.3
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccc-cccch-hhhccccCce-eecCC
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYI-DQSPE-DIWMMQKLMH-LNFGS 289 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~-~~lp~-~i~~l~~L~~-L~l~~ 289 (512)
++++.+++.++++|..+ .+++++|+|++|+|+.+|. .++++++|++|+|++|.+ +.+|. .+.+++++++ +.+.+
T Consensus 12 ~~v~C~~~~Lt~iP~~l--~~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~ 89 (350)
T 4ay9_X 12 RVFLCQESKVTEIPSDL--PRNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKA 89 (350)
T ss_dssp TEEEEESTTCCSCCTTC--CTTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEE
T ss_pred CEEEecCCCCCccCcCc--CCCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccC
Confidence 34555666666666554 2456666666666666664 356666666666666654 33443 2455666554 33344
Q ss_pred cccCCCCCCCCCCCCCCCeeecCC-CCccCc-hhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALH-PISCTP-DILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~-~~~~~~-~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
|.+....|..+..+++|+.+++.+ .+...+ .......++..|++.++ .....++..
T Consensus 90 N~l~~l~~~~f~~l~~L~~L~l~~n~l~~~~~~~~~~~~~l~~l~l~~~--~~i~~l~~~-------------------- 147 (350)
T 4ay9_X 90 NNLLYINPEAFQNLPNLQYLLISNTGIKHLPDVHKIHSLQKVLLDIQDN--INIHTIERN-------------------- 147 (350)
T ss_dssp TTCCEECTTSBCCCTTCCEEEEEEECCSSCCCCTTCCBSSCEEEEEESC--TTCCEECTT--------------------
T ss_pred CcccccCchhhhhccccccccccccccccCCchhhcccchhhhhhhccc--ccccccccc--------------------
Confidence 444433344455555555555543 111111 11223334445555543 122222111
Q ss_pred cccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeeeCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTMGA 447 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~ 447 (512)
.+..++..++.|++++|.++...+ ......+|++|.+.+++..+..+... +.++++|++|++++ +.++.+|.
T Consensus 148 ---~f~~~~~~l~~L~L~~N~i~~i~~-~~f~~~~L~~l~l~~~n~l~~i~~~~-f~~l~~L~~LdLs~-N~l~~lp~-- 219 (350)
T 4ay9_X 148 ---SFVGLSFESVILWLNKNGIQEIHN-SAFNGTQLDELNLSDNNNLEELPNDV-FHGASGPVILDISR-TRIHSLPS-- 219 (350)
T ss_dssp ---SSTTSBSSCEEEECCSSCCCEECT-TSSTTEEEEEEECTTCTTCCCCCTTT-TTTEECCSEEECTT-SCCCCCCS--
T ss_pred ---chhhcchhhhhhccccccccCCCh-hhccccchhHHhhccCCcccCCCHHH-hccCcccchhhcCC-CCcCccCh--
Confidence 122221344455555555442222 22223445555554333222222221 34455555555555 23444443
Q ss_pred CCccccceeeecCCcccCCCCcccCCCCCCcEEEcc
Q 010381 448 GAMPKLESLIVDPCAYLRKLPEELWCIQSLRKLDLH 483 (512)
Q Consensus 448 ~~l~~L~~L~l~~c~~l~~lp~~~~~l~~L~~L~l~ 483 (512)
+.+.+|+.|.+.+|..++.+|. +..+++|+.+++.
T Consensus 220 ~~~~~L~~L~~l~~~~l~~lP~-l~~l~~L~~l~l~ 254 (350)
T 4ay9_X 220 YGLENLKKLRARSTYNLKKLPT-LEKLVALMEASLT 254 (350)
T ss_dssp SSCTTCCEEECTTCTTCCCCCC-TTTCCSCCEEECS
T ss_pred hhhccchHhhhccCCCcCcCCC-chhCcChhhCcCC
Confidence 2344455555555555555553 4455555555554
No 94
>4glp_A Monocyte differentiation antigen CD14; alpha beta BENT solenoid, LRR, lipopolysaccharide, serum, CD leucine-rich repeat, pattern recognition; 4.00A {Homo sapiens}
Probab=99.71 E-value=1.4e-17 Score=160.93 Aligned_cols=181 Identities=18% Similarity=0.182 Sum_probs=94.8
Q ss_pred CeeEEEEecCCcCC--ccCc--cccCccccCeeeecCCCCc-ccChhh--hcCcCCcEEecCCcccccc-c----hhhhc
Q 010381 211 KYLRVLDLGSAVLD--QFPP--GLENLFLLKYLKLNIPSLK-CLPSQL--CTLLNLQTLQMPSSYIDQS-P----EDIWM 278 (512)
Q Consensus 211 ~~L~~L~l~~~~l~--~lp~--~l~~l~~L~~L~l~~~~i~-~lp~~~--~~l~~L~~L~L~~~~~~~l-p----~~i~~ 278 (512)
..++.+.+.++.++ .+.. .+..+++|++|++++|.+. ..|..+ +.+++|++|++++|.+... + ..+..
T Consensus 64 ~~l~~l~l~~~~~~~~~~~~~~~~~~~~~L~~L~l~~n~l~~~~~~~~~~~~~~~L~~L~Ls~n~i~~~~~~~~~~~~~~ 143 (310)
T 4glp_A 64 LRVRRLTVGAAQVPAQLLVGALRVLAYSRLKELTLEDLKITGTMPPLPLEATGLALSSLRLRNVSWATGRSWLAELQQWL 143 (310)
T ss_dssp CCCCEEEECSCCCBHHHHHHHHHHHHHSCCCEEEEESCCCBSCCCCCSSSCCCBCCSSCEEESCCCSSTTSSHHHHHTTB
T ss_pred cceeEEEEeCCcCCHHHHHHHHHhcccCceeEEEeeCCEeccchhhhhhhccCCCCCEEEeecccccchhhhhHHHHhhh
Confidence 34666777776654 1111 1223456777888777776 555555 6777777777777766532 2 23446
Q ss_pred cccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHh--ccCCCCCcE
Q 010381 279 MQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKS--LCKLQKLEW 356 (512)
Q Consensus 279 l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~--l~~l~~L~~ 356 (512)
+++|++|++++|.+.+..| ..++.+++|++|++++|.-.....++.. +..+++|+.
T Consensus 144 ~~~L~~L~Ls~n~l~~~~~----------------------~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~~~~~l~~L~~ 201 (310)
T 4glp_A 144 KPGLKVLSIAQAHSPAFSC----------------------EQVRAFPALTSLDLSDNPGLGERGLMAALCPHKFPAIQN 201 (310)
T ss_dssp CSCCCEEEEECCSSCCCCT----------------------TSCCCCTTCCEEECCSCTTCHHHHHHTTSCTTSSCCCCS
T ss_pred ccCCCEEEeeCCCcchhhH----------------------HHhccCCCCCEEECCCCCCccchhhhHHHhhhcCCCCCE
Confidence 7777777777777643333 3344555566666666520011112222 245556666
Q ss_pred EEeccCCCCCCccc---CcCCCCCCccEEEEecccCCCCCCCCCCCC---cccceeEEEccccc
Q 010381 357 LKLVNESKPSRMVL---SEYQFPPSLTHLSLSNTELKEDPMPTLEKL---PYVQVLKLKQNSYL 414 (512)
Q Consensus 357 L~l~~~~~p~L~~l---~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l---~~L~~L~l~~~~~~ 414 (512)
|++++|.+..+... .+..+ ++|++|++++|.+.+..|..+..+ ++|++|++++|.+.
T Consensus 202 L~Ls~N~l~~l~~~~~~l~~~l-~~L~~L~Ls~N~l~~~~p~~~~~~~~~~~L~~L~Ls~N~l~ 264 (310)
T 4glp_A 202 LALRNTGMETPTGVCAALAAAG-VQPHSLDLSHNSLRATVNPSAPRCMWSSALNSLNLSFAGLE 264 (310)
T ss_dssp CBCCSSCCCCHHHHHHHHHHHT-CCCSSEECTTSCCCCCCCSCCSSCCCCTTCCCEECCSSCCC
T ss_pred EECCCCCCCchHHHHHHHHhcC-CCCCEEECCCCCCCccchhhHHhccCcCcCCEEECCCCCCC
Confidence 66666555321110 02344 555555555555554434443333 34555555544443
No 95
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.68 E-value=2.9e-16 Score=146.84 Aligned_cols=178 Identities=21% Similarity=0.201 Sum_probs=108.7
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchh-hhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~ 288 (512)
...++++++++.++.+|..+. .+|++|++++|.++.++. .++++++|++|++++|.+..++.. +..+++|++|+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~ 91 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLTELGTLGLA 91 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCTTCCEEECT
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCCcCCEEECC
Confidence 345678888888888887665 578888888888885543 577888888888888877766543 6778888888888
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+.+..+..+..+++|+.|+++ ++. .....+..+..+++|+.|++++|.+..+.
T Consensus 92 ~n~l~~~~~~~~~~l~~L~~L~L~----------------------~N~--l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~ 147 (251)
T 3m19_A 92 NNQLASLPLGVFDHLTQLDKLYLG----------------------GNQ--LKSLPSGVFDRLTKLKELRLNTNQLQSIP 147 (251)
T ss_dssp TSCCCCCCTTTTTTCTTCCEEECC----------------------SSC--CCCCCTTTTTTCTTCCEEECCSSCCCCCC
T ss_pred CCcccccChhHhcccCCCCEEEcC----------------------CCc--CCCcChhHhccCCcccEEECcCCcCCccC
Confidence 888764444444455555555444 331 11111111233444444444444332211
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.-.+..+ ++|+.|+|++|.+.+..+..+..+++|+.|++++|.+..
T Consensus 148 ~~~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~~~c 193 (251)
T 3m19_A 148 AGAFDKL-TNLQTLSLSTNQLQSVPHGAFDRLGKLQTITLFGNQFDC 193 (251)
T ss_dssp TTTTTTC-TTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSCCBCT
T ss_pred HHHcCcC-cCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeCCceeC
Confidence 1134455 666666666666665555566666677777776666543
No 96
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.68 E-value=9.4e-17 Score=153.51 Aligned_cols=171 Identities=19% Similarity=0.227 Sum_probs=84.5
Q ss_pred CCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecC
Q 010381 209 KFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 209 ~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~ 288 (512)
.+++|+.|++++|.++.++. +..+++|++|++++|.++.++. ++.+++|++|++++|.+..+|. +..+++|++|+++
T Consensus 44 ~l~~L~~L~l~~~~i~~~~~-~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~~~~-l~~l~~L~~L~L~ 120 (291)
T 1h6t_A 44 ELNSIDQIIANNSDIKSVQG-IQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKDLSS-LKDLKKLKSLSLE 120 (291)
T ss_dssp HHHTCCEEECTTSCCCCCTT-GGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCCGGG-GTTCTTCCEEECT
T ss_pred hcCcccEEEccCCCcccChh-HhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCCChh-hccCCCCCEEECC
Confidence 34555555666655554432 5555666666666666555544 5556666666666665555443 5555666666666
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+.. + ..+. .+++|+.|++++|. .. .+ ..+..+++|+.|++++|.+..+.
T Consensus 121 ~n~i~~-~-~~l~----------------------~l~~L~~L~l~~n~--l~-~~-~~l~~l~~L~~L~L~~N~l~~~~ 172 (291)
T 1h6t_A 121 HNGISD-I-NGLV----------------------HLPQLESLYLGNNK--IT-DI-TVLSRLTKLDTLSLEDNQISDIV 172 (291)
T ss_dssp TSCCCC-C-GGGG----------------------GCTTCCEEECCSSC--CC-CC-GGGGGCTTCSEEECCSSCCCCCG
T ss_pred CCcCCC-C-hhhc----------------------CCCCCCEEEccCCc--CC-cc-hhhccCCCCCEEEccCCccccch
Confidence 555532 1 1223 33333333333331 11 11 23334444444444444443322
Q ss_pred ccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.+..+ ++|+.|++++|.+++. +.+..+++|+.|++++|.+..
T Consensus 173 --~l~~l-~~L~~L~L~~N~i~~l--~~l~~l~~L~~L~l~~n~i~~ 214 (291)
T 1h6t_A 173 --PLAGL-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLN 214 (291)
T ss_dssp --GGTTC-TTCCEEECCSSCCCBC--GGGTTCTTCSEEEEEEEEEEC
T ss_pred --hhcCC-CccCEEECCCCcCCCC--hhhccCCCCCEEECcCCcccC
Confidence 23444 5555555555555431 235556666666666555543
No 97
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.64 E-value=3.5e-16 Score=163.91 Aligned_cols=151 Identities=24% Similarity=0.276 Sum_probs=66.7
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+++|+.|+|++|.++.++. +..+++|++|+|++|.++.+| .++.+++|++|+|++|.+..++ .+..+++|+.|++
T Consensus 62 ~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~Ls~N~l~~l~-~l~~l~~L~~L~L 138 (605)
T 1m9s_A 62 QYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKDLS-SLKDLKKLKSLSLEHNGISDIN-GLVHLPQLESLYL 138 (605)
T ss_dssp GGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCCCT-TSTTCTTCCEEECTTSCCCCCG-GGGGCTTCSEEEC
T ss_pred ccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCCCh-hhccCCCCCEEEecCCCCCCCc-cccCCCccCEEEC
Confidence 344444444444444443333 444444444444444444333 3444444444444444443332 2444444444444
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
++|.+.+ . ..+..+++|+.|++++|. .....| +..+++|+.|+|++|.+..+
T Consensus 139 s~N~l~~-----------------------l-~~l~~l~~L~~L~Ls~N~--l~~~~~--l~~l~~L~~L~Ls~N~i~~l 190 (605)
T 1m9s_A 139 GNNKITD-----------------------I-TVLSRLTKLDTLSLEDNQ--ISDIVP--LAGLTKLQNLYLSKNHISDL 190 (605)
T ss_dssp CSSCCCC-----------------------C-GGGGSCTTCSEEECCSSC--CCCCGG--GTTCTTCCEEECCSSCCCBC
T ss_pred CCCccCC-----------------------c-hhhcccCCCCEEECcCCc--CCCchh--hccCCCCCEEECcCCCCCCC
Confidence 4443321 1 334445555555555541 211112 44555555555555544433
Q ss_pred cccCcCCCCCCccEEEEecccCCCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKED 392 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~ 392 (512)
. .+..+ ++|+.|+|++|.+...
T Consensus 191 ~--~l~~l-~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 191 R--ALAGL-KNLDVLELFSQECLNK 212 (605)
T ss_dssp G--GGTTC-TTCSEEECCSEEEECC
T ss_pred h--HHccC-CCCCEEEccCCcCcCC
Confidence 3 34445 5555666655555443
No 98
>3m19_A Variable lymphocyte receptor A diversity region; adaptive immunity, antibody, T cell, leucine-rich repeat, immune system; 1.70A {Petromyzon marinus} PDB: 3m18_A
Probab=99.63 E-value=1.2e-15 Score=142.66 Aligned_cols=176 Identities=19% Similarity=0.161 Sum_probs=113.8
Q ss_pred cccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecC
Q 010381 234 FLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 234 ~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
...++++++++.++.+|..+. ++++.|++++|.+..++. .+.++++|++|++++|.+.+..|..+.+++
T Consensus 14 ~~~~~l~~~~~~l~~~p~~~~--~~l~~L~L~~n~l~~~~~~~~~~l~~L~~L~L~~n~l~~~~~~~~~~l~-------- 83 (251)
T 3m19_A 14 EGKKEVDCQGKSLDSVPSGIP--ADTEKLDLQSTGLATLSDATFRGLTKLTWLNLDYNQLQTLSAGVFDDLT-------- 83 (251)
T ss_dssp GGGTEEECTTCCCSSCCSCCC--TTCCEEECTTSCCCCCCTTTTTTCTTCCEEECTTSCCCCCCTTTTTTCT--------
T ss_pred CCCeEEecCCCCccccCCCCC--CCCCEEEccCCCcCccCHhHhcCcccCCEEECCCCcCCccCHhHhccCC--------
Confidence 457888999998888887765 689999999998877654 578889999999999888654444444444
Q ss_pred CCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCC
Q 010381 313 HPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKED 392 (512)
Q Consensus 313 ~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~ 392 (512)
+|+.|+++++ ......+..+..+++|+.|++++|.+..+..-.+..+ ++|+.|++++|.+++.
T Consensus 84 --------------~L~~L~L~~n--~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l-~~L~~L~Ls~N~l~~~ 146 (251)
T 3m19_A 84 --------------ELGTLGLANN--QLASLPLGVFDHLTQLDKLYLGGNQLKSLPSGVFDRL-TKLKELRLNTNQLQSI 146 (251)
T ss_dssp --------------TCCEEECTTS--CCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTC-TTCCEEECCSSCCCCC
T ss_pred --------------cCCEEECCCC--cccccChhHhcccCCCCEEEcCCCcCCCcChhHhccC-CcccEEECcCCcCCcc
Confidence 4444444444 1211112334566677777777766543221134556 6777777777776655
Q ss_pred CCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 393 PMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 393 ~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
.+..++.+++|++|++++|.+.+..... +..+++|+.|++++|+
T Consensus 147 ~~~~~~~l~~L~~L~L~~N~l~~~~~~~--~~~l~~L~~L~l~~N~ 190 (251)
T 3m19_A 147 PAGAFDKLTNLQTLSLSTNQLQSVPHGA--FDRLGKLQTITLFGNQ 190 (251)
T ss_dssp CTTTTTTCTTCCEEECCSSCCSCCCTTT--TTTCTTCCEEECCSCC
T ss_pred CHHHcCcCcCCCEEECCCCcCCccCHHH--HhCCCCCCEEEeeCCc
Confidence 5556667777777777777665433222 4566677777776643
No 99
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.62 E-value=1.2e-15 Score=136.94 Aligned_cols=153 Identities=16% Similarity=0.160 Sum_probs=90.8
Q ss_pred cCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeee
Q 010381 231 ENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVS 310 (512)
Q Consensus 231 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~ 310 (512)
+.+++|++|++++|.++.+| .+..+++|++|++++|.+..++ .+..+++|++|++++|.+....|..
T Consensus 41 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~----------- 107 (197)
T 4ezg_A 41 AQMNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPN----------- 107 (197)
T ss_dssp HHHHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCC-----------
T ss_pred hhcCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChh-----------
Confidence 45666777777777777666 5667777777777777555544 4666777777777777664333333
Q ss_pred cCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCC-CCCCcccCcCCCCCCccEEEEecccC
Q 010381 311 ALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNES-KPSRMVLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 311 l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~-~p~L~~l~~~~lp~~L~~L~L~~~~~ 389 (512)
++.+++|+.|++++| ......+..+..+++|+.|++++|. +..+. .+..+ ++|+.|++++|.+
T Consensus 108 -----------l~~l~~L~~L~Ls~n--~i~~~~~~~l~~l~~L~~L~L~~n~~i~~~~--~l~~l-~~L~~L~l~~n~i 171 (197)
T 4ezg_A 108 -----------LSGLTSLTLLDISHS--AHDDSILTKINTLPKVNSIDLSYNGAITDIM--PLKTL-PELKSLNIQFDGV 171 (197)
T ss_dssp -----------CTTCTTCCEEECCSS--BCBGGGHHHHTTCSSCCEEECCSCTBCCCCG--GGGGC-SSCCEEECTTBCC
T ss_pred -----------hcCCCCCCEEEecCC--ccCcHhHHHHhhCCCCCEEEccCCCCccccH--hhcCC-CCCCEEECCCCCC
Confidence 334444445555444 2333344455555566666666554 44333 44556 7777777777776
Q ss_pred CCCCCCCCCCCcccceeEEEccccc
Q 010381 390 KEDPMPTLEKLPYVQVLKLKQNSYL 414 (512)
Q Consensus 390 ~~~~~~~l~~l~~L~~L~l~~~~~~ 414 (512)
.+ . ..+..+++|+.|++++|.+.
T Consensus 172 ~~-~-~~l~~l~~L~~L~l~~N~i~ 194 (197)
T 4ezg_A 172 HD-Y-RGIEDFPKLNQLYAFSQTIG 194 (197)
T ss_dssp CC-C-TTGGGCSSCCEEEECBC---
T ss_pred cC-h-HHhccCCCCCEEEeeCcccC
Confidence 54 2 26667777777777777653
No 100
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.62 E-value=1.2e-15 Score=158.13 Aligned_cols=179 Identities=17% Similarity=0.192 Sum_probs=110.1
Q ss_pred eeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcc
Q 010381 212 YLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~ 291 (512)
+|+.|++++|.++.+|..+. ++|++|++++|.++.+| +.+++|++|++++|.++.+|. +.+ +|++|++++|.
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~ip~-l~~--~L~~L~Ls~N~ 131 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLSTLPE-LPA--SLKHLDVDNNQ 131 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSCCCC-CCT--TCCEEECCSSC
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCCcch-hhc--CCCEEECCCCc
Confidence 67788888887777776553 67888888888888777 456788888888887777776 544 78888888887
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
+.+ +|. .+++|+.|++++ .+..++. .+++|+.|++++|. ...+|. +. ++|+.|++++|.+..+..
T Consensus 132 l~~-lp~---~l~~L~~L~Ls~N~l~~lp~---~l~~L~~L~Ls~N~---L~~lp~-l~--~~L~~L~Ls~N~L~~lp~- 197 (571)
T 3cvr_A 132 LTM-LPE---LPALLEYINADNNQLTMLPE---LPTSLEVLSVRNNQ---LTFLPE-LP--ESLEALDVSTNLLESLPA- 197 (571)
T ss_dssp CSC-CCC---CCTTCCEEECCSSCCSCCCC---CCTTCCEEECCSSC---CSCCCC-CC--TTCCEEECCSSCCSSCCC-
T ss_pred CCC-CCC---cCccccEEeCCCCccCcCCC---cCCCcCEEECCCCC---CCCcch-hh--CCCCEEECcCCCCCchhh-
Confidence 764 554 566667777664 2223332 45566666666662 222333 32 566666666655443211
Q ss_pred CcCCCCCCc-------cEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 371 SEYQFPPSL-------THLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 371 ~~~~lp~~L-------~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
++.+| +.|+|++|.++ .+|..+..+++|+.|++++|.+.+..
T Consensus 198 ----~~~~L~~~~~~L~~L~Ls~N~l~-~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 198 ----VPVRNHHSEETEIFFRCRENRIT-HIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp ----CC--------CCEEEECCSSCCC-CCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred ----HHHhhhcccccceEEecCCCcce-ecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 21344 66666666665 34444555666666666666655443
No 101
>1h6t_A Internalin B; cell adhesion, leucine rich repeat, IG-like domain, EF-hand domain; 1.6A {Listeria monocytogenes} SCOP: b.1.18.15 c.10.2.1 PDB: 2wqu_A 2uzy_A 2uzx_A 2wqv_A* 2wqw_A 2wqx_A 1d0b_A 1otn_A 1oto_A 1otm_A
Probab=99.62 E-value=2.4e-15 Score=143.74 Aligned_cols=182 Identities=19% Similarity=0.194 Sum_probs=139.1
Q ss_pred EecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCC
Q 010381 217 DLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPP 296 (512)
Q Consensus 217 ~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~ 296 (512)
.+....++... .+..+++|++|++++|.++.++ .++.+++|++|++++|.+..++. +.++++|++|++++|.+..
T Consensus 30 ~l~~~~~~~~~-~~~~l~~L~~L~l~~~~i~~~~-~~~~l~~L~~L~L~~n~l~~~~~-l~~l~~L~~L~l~~n~l~~-- 104 (291)
T 1h6t_A 30 NLKKKSVTDAV-TQNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LANLKNLGWLFLDENKVKD-- 104 (291)
T ss_dssp HTTCSCTTSEE-CHHHHHTCCEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCTTCCEEECCSSCCCC--
T ss_pred HhcCCCccccc-chhhcCcccEEEccCCCcccCh-hHhcCCCCCEEEccCCccCCCcc-cccCCCCCEEECCCCcCCC--
Confidence 34444444321 2456788888888888888776 47888888888888888888776 8888888888888887642
Q ss_pred CCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCC
Q 010381 297 TNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFP 376 (512)
Q Consensus 297 p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp 376 (512)
+..+..+++|+.|++++|. .. .+ ..+..+++|+.|++++|.+..+. .+..+
T Consensus 105 ----------------------~~~l~~l~~L~~L~L~~n~--i~-~~-~~l~~l~~L~~L~l~~n~l~~~~--~l~~l- 155 (291)
T 1h6t_A 105 ----------------------LSSLKDLKKLKSLSLEHNG--IS-DI-NGLVHLPQLESLYLGNNKITDIT--VLSRL- 155 (291)
T ss_dssp ----------------------GGGGTTCTTCCEEECTTSC--CC-CC-GGGGGCTTCCEEECCSSCCCCCG--GGGGC-
T ss_pred ----------------------ChhhccCCCCCEEECCCCc--CC-CC-hhhcCCCCCCEEEccCCcCCcch--hhccC-
Confidence 2235667777777777763 22 22 35778999999999999887665 67788
Q ss_pred CCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCC
Q 010381 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMY 438 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~ 438 (512)
++|+.|++++|.+.+..+ +..+++|+.|++++|.+.+.. . +..+++|+.|++++|+
T Consensus 156 ~~L~~L~L~~N~l~~~~~--l~~l~~L~~L~L~~N~i~~l~--~--l~~l~~L~~L~l~~n~ 211 (291)
T 1h6t_A 156 TKLDTLSLEDNQISDIVP--LAGLTKLQNLYLSKNHISDLR--A--LAGLKNLDVLELFSQE 211 (291)
T ss_dssp TTCSEEECCSSCCCCCGG--GTTCTTCCEEECCSSCCCBCG--G--GTTCTTCSEEEEEEEE
T ss_pred CCCCEEEccCCccccchh--hcCCCccCEEECCCCcCCCCh--h--hccCCCCCEEECcCCc
Confidence 999999999999876544 889999999999999887632 2 6789999999999954
No 102
>4ay9_X Follicle-stimulating hormone receptor; hormone-receptor complex, leucine-rich repeats, LRR, GPCR; HET: TYS NAG; 2.50A {Homo sapiens} PDB: 1xwd_C*
Probab=99.61 E-value=1.8e-15 Score=148.78 Aligned_cols=217 Identities=14% Similarity=0.087 Sum_probs=140.0
Q ss_pred CeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCc-ccCh-hhhcCcCCcE-EecCCccccccc-hhhhccccCcee
Q 010381 211 KYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLK-CLPS-QLCTLLNLQT-LQMPSSYIDQSP-EDIWMMQKLMHL 285 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~-~lp~-~~~~l~~L~~-L~L~~~~~~~lp-~~i~~l~~L~~L 285 (512)
++++.|+|++|.++.+|. .|.++++|++|+|++|.+. .+|. .+.++++|++ +.+.+|++..++ ..+..+++|++|
T Consensus 30 ~~l~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~i~~~i~~~~f~~L~~l~~~l~~~~N~l~~l~~~~f~~l~~L~~L 109 (350)
T 4ay9_X 30 RNAIELRFVLTKLRVIQKGAFSGFGDLEKIEISQNDVLEVIEADVFSNLPKLHEIRIEKANNLLYINPEAFQNLPNLQYL 109 (350)
T ss_dssp TTCSEEEEESCCCSEECTTSSTTCTTCCEEEEECCTTCCEECTTSBCSCTTCCEEEEEEETTCCEECTTSBCCCTTCCEE
T ss_pred CCCCEEEccCCcCCCcCHHHHcCCCCCCEEECcCCCCCCccChhHhhcchhhhhhhcccCCcccccCchhhhhccccccc
Confidence 467778888888887764 4777888888888888764 4554 3567777665 444455777774 446778888888
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCC--CCccCch-hcCCC-CCCCeEEEeccchhhhhhHHHhccCCCCCcEEEecc
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALH--PISCTPD-ILGRL-PNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVN 361 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~--~~~~~~~-~l~~l-~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~ 361 (512)
++++|.+....+..+....++..+++.+ .+...+. .+..+ ..++.|+++++
T Consensus 110 ~l~~n~l~~~~~~~~~~~~~l~~l~l~~~~~i~~l~~~~f~~~~~~l~~L~L~~N------------------------- 164 (350)
T 4ay9_X 110 LISNTGIKHLPDVHKIHSLQKVLLDIQDNINIHTIERNSFVGLSFESVILWLNKN------------------------- 164 (350)
T ss_dssp EEEEECCSSCCCCTTCCBSSCEEEEEESCTTCCEECTTSSTTSBSSCEEEECCSS-------------------------
T ss_pred cccccccccCCchhhcccchhhhhhhccccccccccccchhhcchhhhhhccccc-------------------------
Confidence 8888877654444455555666666542 1122221 12222 23444555444
Q ss_pred CCCCCCcccCcCCCCCCccEEEEec-ccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc
Q 010381 362 ESKPSRMVLSEYQFPPSLTHLSLSN-TELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL 440 (512)
Q Consensus 362 ~~~p~L~~l~~~~lp~~L~~L~L~~-~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 440 (512)
.+..+.. ..... .+|++|.+.+ |.++..+...|+.+++|++|++++|.+.... ...+.+|+.|.+.++..+
T Consensus 165 -~i~~i~~-~~f~~-~~L~~l~l~~~n~l~~i~~~~f~~l~~L~~LdLs~N~l~~lp-----~~~~~~L~~L~~l~~~~l 236 (350)
T 4ay9_X 165 -GIQEIHN-SAFNG-TQLDELNLSDNNNLEELPNDVFHGASGPVILDISRTRIHSLP-----SYGLENLKKLRARSTYNL 236 (350)
T ss_dssp -CCCEECT-TSSTT-EEEEEEECTTCTTCCCCCTTTTTTEECCSEEECTTSCCCCCC-----SSSCTTCCEEECTTCTTC
T ss_pred -cccCCCh-hhccc-cchhHHhhccCCcccCCCHHHhccCcccchhhcCCCCcCccC-----hhhhccchHhhhccCCCc
Confidence 3321110 33344 6788888875 4555455556888999999999988876432 345788888888888888
Q ss_pred ceeeeCCCCccccceeeecCC
Q 010381 441 DEWTMGAGAMPKLESLIVDPC 461 (512)
Q Consensus 441 ~~l~~~~~~l~~L~~L~l~~c 461 (512)
+.+|. +..+++|+.+++.++
T Consensus 237 ~~lP~-l~~l~~L~~l~l~~~ 256 (350)
T 4ay9_X 237 KKLPT-LEKLVALMEASLTYP 256 (350)
T ss_dssp CCCCC-TTTCCSCCEEECSCH
T ss_pred CcCCC-chhCcChhhCcCCCC
Confidence 88884 778899999988753
No 103
>4ezg_A Putative uncharacterized protein; internalin-A, leucine-rich repeat protein, structural genomi center for structural genomics, JCSG; HET: MSE; 1.50A {Listeria monocytogenes}
Probab=99.61 E-value=1.1e-15 Score=137.20 Aligned_cols=150 Identities=16% Similarity=0.204 Sum_probs=72.8
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc-cchhhhccccCceeecC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ-SPEDIWMMQKLMHLNFG 288 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~L~l~ 288 (512)
+++|+.|++++|.++.+| .+..+++|++|++++|.++.++ .++.+++|++|++++|.+.. .|..+..+++|++|+++
T Consensus 43 l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~l~~n~~~~~~-~l~~l~~L~~L~l~~n~l~~~~~~~l~~l~~L~~L~Ls 120 (197)
T 4ezg_A 43 MNSLTYITLANINVTDLT-GIEYAHNIKDLTINNIHATNYN-PISGLSNLERLRIMGKDVTSDKIPNLSGLTSLTLLDIS 120 (197)
T ss_dssp HHTCCEEEEESSCCSCCT-TGGGCTTCSEEEEESCCCSCCG-GGTTCTTCCEEEEECTTCBGGGSCCCTTCTTCCEEECC
T ss_pred cCCccEEeccCCCccChH-HHhcCCCCCEEEccCCCCCcch-hhhcCCCCCEEEeECCccCcccChhhcCCCCCCEEEec
Confidence 345555555555555555 4555555666666555554443 45555566666665555543 34445555666666665
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCc
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRM 368 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~ 368 (512)
+|.+... .+..++.+++|+.|++++| .....++ .+..+++|+.|++++|.+..+.
T Consensus 121 ~n~i~~~----------------------~~~~l~~l~~L~~L~L~~n--~~i~~~~-~l~~l~~L~~L~l~~n~i~~~~ 175 (197)
T 4ezg_A 121 HSAHDDS----------------------ILTKINTLPKVNSIDLSYN--GAITDIM-PLKTLPELKSLNIQFDGVHDYR 175 (197)
T ss_dssp SSBCBGG----------------------GHHHHTTCSSCCEEECCSC--TBCCCCG-GGGGCSSCCEEECTTBCCCCCT
T ss_pred CCccCcH----------------------hHHHHhhCCCCCEEEccCC--CCccccH-hhcCCCCCCEEECCCCCCcChH
Confidence 5555321 2223333333333333333 1111222 3344445555555554443332
Q ss_pred ccCcCCCCCCccEEEEecccC
Q 010381 369 VLSEYQFPPSLTHLSLSNTEL 389 (512)
Q Consensus 369 ~l~~~~lp~~L~~L~L~~~~~ 389 (512)
.+..+ ++|+.|++++|.+
T Consensus 176 --~l~~l-~~L~~L~l~~N~i 193 (197)
T 4ezg_A 176 --GIEDF-PKLNQLYAFSQTI 193 (197)
T ss_dssp --TGGGC-SSCCEEEECBC--
T ss_pred --HhccC-CCCCEEEeeCccc
Confidence 34455 6666666666654
No 104
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.61 E-value=5.5e-16 Score=145.85 Aligned_cols=170 Identities=18% Similarity=0.201 Sum_probs=113.6
Q ss_pred CCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCC
Q 010381 210 FKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGS 289 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~ 289 (512)
+..+..++++++.++.++ .+..+++|++|++++|.++.+| .++.+++|++|++++|.+..+|. +.++++|++|++++
T Consensus 18 l~~l~~l~l~~~~i~~~~-~~~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~ 94 (263)
T 1xeu_A 18 LANAVKQNLGKQSVTDLV-SQKELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNR 94 (263)
T ss_dssp HHHHHHHHHTCSCTTSEE-CHHHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCS
T ss_pred HHHHHHHHhcCCCccccc-chhhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCC
Confidence 455666677777777665 5677888888888888888777 67788888888888888888776 78888888888888
Q ss_pred cccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcc
Q 010381 290 ITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMV 369 (512)
Q Consensus 290 ~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~ 369 (512)
|.+.+ +|.. .. ++|+.|++++|. . ..+ ..+..+++|+.|++++|.+..+.
T Consensus 95 N~l~~-l~~~-~~-----------------------~~L~~L~L~~N~--l-~~~-~~l~~l~~L~~L~Ls~N~i~~~~- 144 (263)
T 1xeu_A 95 NRLKN-LNGI-PS-----------------------ACLSRLFLDNNE--L-RDT-DSLIHLKNLEILSIRNNKLKSIV- 144 (263)
T ss_dssp SCCSC-CTTC-CC-----------------------SSCCEEECCSSC--C-SBS-GGGTTCTTCCEEECTTSCCCBCG-
T ss_pred CccCC-cCcc-cc-----------------------CcccEEEccCCc--c-CCC-hhhcCcccccEEECCCCcCCCCh-
Confidence 87753 2321 11 444455555442 1 111 13555566666666666554443
Q ss_pred cCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 370 LSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 370 l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
.+..+ ++|+.|++++|.+.+. ..+..+++|+.|++++|.+...
T Consensus 145 -~l~~l-~~L~~L~L~~N~i~~~--~~l~~l~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 145 -MLGFL-SKLEVLDLHGNEITNT--GGLTRLKKVNWIDLTGQKCVNE 187 (263)
T ss_dssp -GGGGC-TTCCEEECTTSCCCBC--TTSTTCCCCCEEEEEEEEEECC
T ss_pred -HHccC-CCCCEEECCCCcCcch--HHhccCCCCCEEeCCCCcccCC
Confidence 45566 7777777777776554 5667777777888877776554
No 105
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.60 E-value=2.3e-15 Score=136.40 Aligned_cols=175 Identities=19% Similarity=0.260 Sum_probs=85.6
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccchh-hhccccCceeecCCccc
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITL 292 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 292 (512)
.++.+++.++.+|..+ .++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.+
T Consensus 11 ~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls~n~l 88 (208)
T 2o6s_A 11 TVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLSTNQL 88 (208)
T ss_dssp EEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred EEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECCCCcC
Confidence 3444455555555433 23555555555555544432 44555555555555555555443 34555555555555555
Q ss_pred CCCCCCCCCCCCCCCeeecCC-CCccCch-hcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 293 PAPPTNYSSSLKNLIFVSALH-PISCTPD-ILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 293 ~~~~p~~~~~l~~L~~l~l~~-~~~~~~~-~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
.+..+..++++++|+.|++++ .+...+. .+..+++|+.|+++++. .....+..+..+++|+.|++++|.
T Consensus 89 ~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~l~~L~~L~l~~N~------- 159 (208)
T 2o6s_A 89 QSLPNGVFDKLTQLKELALNTNQLQSLPDGVFDKLTQLKDLRLYQNQ--LKSVPDGVFDRLTSLQYIWLHDNP------- 159 (208)
T ss_dssp CCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC--CSCCCTTTTTTCTTCCEEECCSCC-------
T ss_pred CccCHhHhcCccCCCEEEcCCCcCcccCHhHhccCCcCCEEECCCCc--cceeCHHHhccCCCccEEEecCCC-------
Confidence 433333344455555555543 1122222 24455555666655551 221112224445555555555543
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
+...+ ++|+.|+++.|.+++..|..++.++
T Consensus 160 ~~~~~-~~l~~L~~~~n~~~g~ip~~~~~l~ 189 (208)
T 2o6s_A 160 WDCTC-PGIRYLSEWINKHSGVVRNSAGSVA 189 (208)
T ss_dssp BCCCT-TTTHHHHHHHHHCTTTBBCTTSSBC
T ss_pred eecCC-CCHHHHHHHHHhCCceeeccCcccc
Confidence 23344 5566666666666555555555444
No 106
>1m9s_A Internalin B; cell invasion, GW domains, SH3 domains, signaling protein; 2.65A {Listeria monocytogenes} SCOP: b.1.18.15 b.34.11.1 b.34.11.1 b.34.11.1 c.10.2.1 PDB: 2y5q_A
Probab=99.60 E-value=4.1e-15 Score=155.83 Aligned_cols=188 Identities=18% Similarity=0.189 Sum_probs=127.3
Q ss_pred EEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCC
Q 010381 215 VLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 215 ~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~ 294 (512)
.+.+..+.+..++. +..+.+|++|++++|.+..+| .++.+++|+.|+|++|.+..++. +..+++|++|++++|.+..
T Consensus 25 ~l~l~~~~i~~~~~-~~~L~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~Ls~N~l~~~~~-l~~l~~L~~L~Ls~N~l~~ 101 (605)
T 1m9s_A 25 KDNLKKKSVTDAVT-QNELNSIDQIIANNSDIKSVQ-GIQYLPNVTKLFLNGNKLTDIKP-LTNLKNLGWLFLDENKIKD 101 (605)
T ss_dssp HHHTTCSCTTSEEC-HHHHTTCCCCBCTTCCCCCCT-TGGGCTTCCEEECTTSCCCCCGG-GGGCTTCCEEECCSSCCCC
T ss_pred HHhccCCCcccccc-hhcCCCCCEEECcCCCCCCCh-HHccCCCCCEEEeeCCCCCCChh-hccCCCCCEEECcCCCCCC
Confidence 33444444443222 345667777777777777665 46677777777777777766665 6677777777777776643
Q ss_pred CCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCC
Q 010381 295 PPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQ 374 (512)
Q Consensus 295 ~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~ 374 (512)
+..+..+++|+.|+++++.-..+..+..+++|+.|++++|. .. .+ ..+..+++|+.|+|++|.+..+. .+..
T Consensus 102 --l~~l~~l~~L~~L~Ls~N~l~~l~~l~~l~~L~~L~Ls~N~--l~-~l-~~l~~l~~L~~L~Ls~N~l~~~~--~l~~ 173 (605)
T 1m9s_A 102 --LSSLKDLKKLKSLSLEHNGISDINGLVHLPQLESLYLGNNK--IT-DI-TVLSRLTKLDTLSLEDNQISDIV--PLAG 173 (605)
T ss_dssp --CTTSTTCTTCCEEECTTSCCCCCGGGGGCTTCSEEECCSSC--CC-CC-GGGGSCTTCSEEECCSSCCCCCG--GGTT
T ss_pred --ChhhccCCCCCEEEecCCCCCCCccccCCCccCEEECCCCc--cC-Cc-hhhcccCCCCEEECcCCcCCCch--hhcc
Confidence 23566667777777664212223457788888888888883 22 22 56778888999999888776554 3567
Q ss_pred CCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCc
Q 010381 375 FPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGR 416 (512)
Q Consensus 375 lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~ 416 (512)
+ ++|+.|+|++|.+.+. +.+..+++|+.|+|++|.+.+.
T Consensus 174 l-~~L~~L~Ls~N~i~~l--~~l~~l~~L~~L~L~~N~l~~~ 212 (605)
T 1m9s_A 174 L-TKLQNLYLSKNHISDL--RALAGLKNLDVLELFSQECLNK 212 (605)
T ss_dssp C-TTCCEEECCSSCCCBC--GGGTTCTTCSEEECCSEEEECC
T ss_pred C-CCCCEEECcCCCCCCC--hHHccCCCCCEEEccCCcCcCC
Confidence 7 8888888888887652 4678888888888888887654
No 107
>3sfz_A APAF-1, apoptotic peptidase activating factor 1; apoptosis, caspase activation, cytochrome C, procaspase-9, A nucleotide, cytosol; HET: ADP; 3.00A {Mus musculus} PDB: 3shf_A* 3iyt_A* 3iza_A*
Probab=99.56 E-value=2.1e-15 Score=172.96 Aligned_cols=131 Identities=19% Similarity=0.300 Sum_probs=109.5
Q ss_pred CCCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCCc-------cccCCCCHHHHHhhhcccCCCCcchhhHhhhhc
Q 010381 1 MENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPLE-------NYLQGETIPTILSRICSVLELPFHLKICCIYLC 72 (512)
Q Consensus 1 v~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~~-------~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a 72 (512)
|++|+|+||||+++|+.|+ +. .+|+.+++.+...... ... +.+..+|+ +||+.|+++.|.||+|||
T Consensus 314 ~~~~~glPLal~~~~~~l~~~~--~~~~~~l~~l~~~~~~~~~~~~~~~~--~~~~~~l~--~s~~~L~~~~~~~~~~l~ 387 (1249)
T 3sfz_A 314 IKECKGSPLVVSLIGALLRDFP--NRWAYYLRQLQNKQFKRIRKSSSYDY--EALDEAMS--ISVEMLREDIKDYYTDLS 387 (1249)
T ss_dssp HHHTTTCHHHHHHHHHHHHHSS--SCHHHHHHHHHSCCCCCSSCTTCTTH--HHHHHHHH--HHHHTSCTTTHHHHHHGG
T ss_pred HHHhCCCHHHHHHHHHHhhcCh--hHHHHHHHHHhhhhhhhcccccccch--HHHHHHHH--HHHHhCCHHHHHHHHHhC
Confidence 4689999999999999999 55 5798888877544320 011 35899999 999999999999999999
Q ss_pred ccCCCceeCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHhhhhc
Q 010381 73 VFPPSIEISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLVAEKT 147 (512)
Q Consensus 73 ~fp~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~~~~~ 147 (512)
+||+++.|+++.++.+|.++ ++.++.++++|++++|++... .+....|+|||+++++++..+.++
T Consensus 388 ~f~~~~~i~~~~~~~~~~~~-------~~~~~~~l~~L~~~sl~~~~~---~~~~~~~~~h~l~~~~~~~~~~~~ 452 (1249)
T 3sfz_A 388 ILQKDVKVPTKVLCVLWDLE-------TEEVEDILQEFVNKSLLFCNR---NGKSFCYYLHDLQVDFLTEKNRSQ 452 (1249)
T ss_dssp GSCTTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSCEEEE---SSSSEEEECCHHHHHHHHHHTGGG
T ss_pred ccCCCCeeCHHHHHHHhCCC-------HHHHHHHHHHHHhccceEEec---CCCceEEEecHHHHHHHHhhhhHH
Confidence 99999999999999999655 456899999999999999765 344467999999999999886554
No 108
>3cvr_A Invasion plasmid antigen; leucine rich repeat and alpha fold, ligase; 2.80A {Shigella flexneri 2A}
Probab=99.55 E-value=6.3e-15 Score=152.81 Aligned_cols=185 Identities=16% Similarity=0.116 Sum_probs=121.2
Q ss_pred ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC
Q 010381 235 LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP 314 (512)
Q Consensus 235 ~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~ 314 (512)
+|++|++++|.++.+|..+. ++|++|++++|.++.+| ..+++|++|++++|.+.+ +|. +++ +|+.|+++
T Consensus 60 ~L~~L~Ls~n~L~~lp~~l~--~~L~~L~Ls~N~l~~ip---~~l~~L~~L~Ls~N~l~~-ip~-l~~--~L~~L~Ls-- 128 (571)
T 3cvr_A 60 QFSELQLNRLNLSSLPDNLP--PQITVLEITQNALISLP---ELPASLEYLDACDNRLST-LPE-LPA--SLKHLDVD-- 128 (571)
T ss_dssp TCSEEECCSSCCSCCCSCCC--TTCSEEECCSSCCSCCC---CCCTTCCEEECCSSCCSC-CCC-CCT--TCCEEECC--
T ss_pred CccEEEeCCCCCCccCHhHc--CCCCEEECcCCCCcccc---cccCCCCEEEccCCCCCC-cch-hhc--CCCEEECC--
Confidence 89999999999998887664 78999999999998888 567899999999998865 565 443 55555555
Q ss_pred CccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCC
Q 010381 315 ISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPM 394 (512)
Q Consensus 315 ~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~ 394 (512)
+|. ...+|. .+++|+.|++++|.+..+. . .+ ++|+.|++++|.+++ .|
T Consensus 129 --------------------~N~---l~~lp~---~l~~L~~L~Ls~N~l~~lp--~--~l-~~L~~L~Ls~N~L~~-lp 176 (571)
T 3cvr_A 129 --------------------NNQ---LTMLPE---LPALLEYINADNNQLTMLP--E--LP-TSLEVLSVRNNQLTF-LP 176 (571)
T ss_dssp --------------------SSC---CSCCCC---CCTTCCEEECCSSCCSCCC--C--CC-TTCCEEECCSSCCSC-CC
T ss_pred --------------------CCc---CCCCCC---cCccccEEeCCCCccCcCC--C--cC-CCcCEEECCCCCCCC-cc
Confidence 331 111222 3445555555555443321 1 23 677777777777665 34
Q ss_pred CCCCCCcccceeEEEcccccCceeeeeCCCCCccc-------cEEEecCCCCcceeeeCCCCccccceeeecCCcccCCC
Q 010381 395 PTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPEL-------KVLHLKSMYWLDEWTMGAGAMPKLESLIVDPCAYLRKL 467 (512)
Q Consensus 395 ~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L-------~~L~L~~~~~l~~l~~~~~~l~~L~~L~l~~c~~l~~l 467 (512)
. +. ++|+.|++++|.+.... .+ .. +| +.|+|++ +.++.+|..+..+++|+.|++++|+....+
T Consensus 177 ~-l~--~~L~~L~Ls~N~L~~lp-~~--~~---~L~~~~~~L~~L~Ls~-N~l~~lp~~l~~l~~L~~L~L~~N~l~~~~ 246 (571)
T 3cvr_A 177 E-LP--ESLEALDVSTNLLESLP-AV--PV---RNHHSEETEIFFRCRE-NRITHIPENILSLDPTCTIILEDNPLSSRI 246 (571)
T ss_dssp C-CC--TTCCEEECCSSCCSSCC-CC--C-----------CCEEEECCS-SCCCCCCGGGGGSCTTEEEECCSSSCCHHH
T ss_pred h-hh--CCCCEEECcCCCCCchh-hH--HH---hhhcccccceEEecCC-CcceecCHHHhcCCCCCEEEeeCCcCCCcC
Confidence 3 44 67777777777765322 21 11 45 7788877 456677776677788888888887765555
Q ss_pred CcccC
Q 010381 468 PEELW 472 (512)
Q Consensus 468 p~~~~ 472 (512)
|..+.
T Consensus 247 p~~l~ 251 (571)
T 3cvr_A 247 RESLS 251 (571)
T ss_dssp HHHHH
T ss_pred HHHHH
Confidence 55443
No 109
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.55 E-value=2.5e-15 Score=161.38 Aligned_cols=151 Identities=17% Similarity=0.122 Sum_probs=80.3
Q ss_pred CceeEEEEEecCCccccCCC-CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCccccCccccCe
Q 010381 161 ANVKRCFILKDLIDFFPSEY-SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKY 238 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~-~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~ 238 (512)
..++++++..+.....+... ...+|+.+.+....... ....+ +..+..++.|++|+|++|.+..+|..+..+++|++
T Consensus 173 ~~~~~l~L~~n~~~~~~~~~l~~l~Ls~~~i~~~~~~~-n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~~l~~L~~ 251 (727)
T 4b8c_D 173 PLTPKIELFANGKDEANQALLQHKKLSQYSIDEDDDIE-NRMVMPKDSKYDDQLWHALDLSNLQIFNISANIFKYDFLTR 251 (727)
T ss_dssp --------------------------------------------------CCCCCCEEECTTSCCSCCCGGGGGCCSCSC
T ss_pred CccceEEeeCCCCCcchhhHhhcCccCcccccCccccc-cceecChhhhccCCCCcEEECCCCCCCCCChhhcCCCCCCE
Confidence 44667777545444433332 33444444333322110 00012 44447778888888888887777777778888888
Q ss_pred eeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 239 LKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 239 L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
|+|++|.++.+|..++++++|++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++++++|+.|++++
T Consensus 252 L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~-~lp~~~~~l~~L~~L~L~~ 325 (727)
T 4b8c_D 252 LYLNGNSLTELPAEIKNLSNLRVLDLSHNRLTSLPAELGSCFQLKYFYFFDNMVT-TLPWEFGNLCNLQFLGVEG 325 (727)
T ss_dssp CBCTTSCCSCCCGGGGGGTTCCEEECTTSCCSSCCSSGGGGTTCSEEECCSSCCC-CCCSSTTSCTTCCCEECTT
T ss_pred EEeeCCcCcccChhhhCCCCCCEEeCcCCcCCccChhhcCCCCCCEEECCCCCCC-ccChhhhcCCCccEEeCCC
Confidence 8888888888887788888888888888877788877888888888888888764 5666666666666666553
No 110
>2o6s_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 1.50A {Eptatretus burgeri}
Probab=99.55 E-value=1.1e-14 Score=131.79 Aligned_cols=75 Identities=13% Similarity=0.206 Sum_probs=51.9
Q ss_pred cCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecC
Q 010381 236 LKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 236 L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
-+.++.+++.++.+|..+ .++|++|++++|.+..+|.. +..+++|++|++++|.+.+..+..+.++++|+.|+++
T Consensus 9 ~~~v~c~~~~l~~~p~~~--~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~Ls 84 (208)
T 2o6s_A 9 GTTVECYSQGRTSVPTGI--PAQTTYLDLETNSLKSLPNGVFDELTSLTQLYLGGNKLQSLPNGVFNKLTSLTYLNLS 84 (208)
T ss_dssp TTEEECCSSCCSSCCSCC--CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCEEEecCCCccCCCCCC--CCCCcEEEcCCCccCcCChhhhcccccCcEEECCCCccCccChhhcCCCCCcCEEECC
Confidence 356777888888888655 46899999999988887764 6788999999999888753323333444444444443
No 111
>1xeu_A Internalin C; cellular invasion, leucine-rich repeat, cell invasion; 2.05A {Listeria monocytogenes}
Probab=99.54 E-value=1e-14 Score=137.05 Aligned_cols=150 Identities=17% Similarity=0.171 Sum_probs=108.5
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+++|++|++++|.++.+| .++.+++|++|++++|.++.+|. ++.+++|++|++++|.++.+|... . ++|++|++
T Consensus 38 ~~l~~L~~L~l~~n~i~~l~-~l~~l~~L~~L~L~~N~i~~~~~-l~~l~~L~~L~L~~N~l~~l~~~~-~-~~L~~L~L 113 (263)
T 1xeu_A 38 KELSGVQNFNGDNSNIQSLA-GMQFFTNLKELHLSHNQISDLSP-LKDLTKLEELSVNRNRLKNLNGIP-S-ACLSRLFL 113 (263)
T ss_dssp HHHTTCSEEECTTSCCCCCT-TGGGCTTCCEEECCSSCCCCCGG-GTTCSSCCEEECCSSCCSCCTTCC-C-SSCCEEEC
T ss_pred hhcCcCcEEECcCCCcccch-HHhhCCCCCEEECCCCccCCChh-hccCCCCCEEECCCCccCCcCccc-c-CcccEEEc
Confidence 67788999999999988887 68889999999999999998876 889999999999999888887533 3 89999999
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSR 367 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L 367 (512)
++|.+.+ ++ .+ +.+++|+.|++++|. ...++ .+..+++|+.|++++|.+..+
T Consensus 114 ~~N~l~~-~~-~l----------------------~~l~~L~~L~Ls~N~---i~~~~-~l~~l~~L~~L~L~~N~i~~~ 165 (263)
T 1xeu_A 114 DNNELRD-TD-SL----------------------IHLKNLEILSIRNNK---LKSIV-MLGFLSKLEVLDLHGNEITNT 165 (263)
T ss_dssp CSSCCSB-SG-GG----------------------TTCTTCCEEECTTSC---CCBCG-GGGGCTTCCEEECTTSCCCBC
T ss_pred cCCccCC-Ch-hh----------------------cCcccccEEECCCCc---CCCCh-HHccCCCCCEEECCCCcCcch
Confidence 9988753 21 23 444455555555442 11122 355566666666666665544
Q ss_pred cccCcCCCCCCccEEEEecccCCCC
Q 010381 368 MVLSEYQFPPSLTHLSLSNTELKED 392 (512)
Q Consensus 368 ~~l~~~~lp~~L~~L~L~~~~~~~~ 392 (512)
. .+..+ ++|+.|++++|.+...
T Consensus 166 ~--~l~~l-~~L~~L~l~~N~~~~~ 187 (263)
T 1xeu_A 166 G--GLTRL-KKVNWIDLTGQKCVNE 187 (263)
T ss_dssp T--TSTTC-CCCCEEEEEEEEEECC
T ss_pred H--HhccC-CCCCEEeCCCCcccCC
Confidence 3 56677 7888888888877654
No 112
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.53 E-value=1.6e-16 Score=165.59 Aligned_cols=120 Identities=20% Similarity=0.158 Sum_probs=97.9
Q ss_pred CCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEE
Q 010381 353 KLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVL 432 (512)
Q Consensus 353 ~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L 432 (512)
.|+.|++++|.+..+. .+..+ ++|+.|+|++|.++ ..|..++.+++|+.|++++|.+.+. + . ++.+++|+.|
T Consensus 442 ~L~~L~Ls~n~l~~lp--~~~~l-~~L~~L~Ls~N~l~-~lp~~~~~l~~L~~L~Ls~N~l~~l-p--~-l~~l~~L~~L 513 (567)
T 1dce_A 442 DVRVLHLAHKDLTVLC--HLEQL-LLVTHLDLSHNRLR-ALPPALAALRCLEVLQASDNALENV-D--G-VANLPRLQEL 513 (567)
T ss_dssp TCSEEECTTSCCSSCC--CGGGG-TTCCEEECCSSCCC-CCCGGGGGCTTCCEEECCSSCCCCC-G--G-GTTCSSCCEE
T ss_pred CceEEEecCCCCCCCc--Ccccc-ccCcEeecCccccc-ccchhhhcCCCCCEEECCCCCCCCC-c--c-cCCCCCCcEE
Confidence 5899999998776554 46788 99999999999987 6777899999999999999998763 3 3 7889999999
Q ss_pred EecCCCCccee--eeCCCCccccceeeecCCcccCCCCccc----CCCCCCcEEEc
Q 010381 433 HLKSMYWLDEW--TMGAGAMPKLESLIVDPCAYLRKLPEEL----WCIQSLRKLDL 482 (512)
Q Consensus 433 ~L~~~~~l~~l--~~~~~~l~~L~~L~l~~c~~l~~lp~~~----~~l~~L~~L~l 482 (512)
+|++| .++.+ |..++.+++|+.|++++|+. +.+|... ..+|+|+.|++
T Consensus 514 ~Ls~N-~l~~~~~p~~l~~l~~L~~L~L~~N~l-~~~~~~~~~l~~~lp~L~~L~l 567 (567)
T 1dce_A 514 LLCNN-RLQQSAAIQPLVSCPRLVLLNLQGNSL-CQEEGIQERLAEMLPSVSSILT 567 (567)
T ss_dssp ECCSS-CCCSSSTTGGGGGCTTCCEEECTTSGG-GGSSSCTTHHHHHCTTCSEEEC
T ss_pred ECCCC-CCCCCCCcHHHhcCCCCCEEEecCCcC-CCCccHHHHHHHHCcccCccCC
Confidence 99995 66666 78889999999999999984 4444432 34899998864
No 113
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A*
Probab=99.51 E-value=6e-15 Score=157.37 Aligned_cols=111 Identities=19% Similarity=0.198 Sum_probs=96.9
Q ss_pred CCCchhHHHHhhhccc-CC-CHHHHHHHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCcch-hhHhhhhcccCCCcee
Q 010381 4 GEKIRLDSVLIGGPLI-RL-KHEAWQFFILHYGSMPLENYLQGETIPTILSRICSVLELPFHL-KICCIYLCVFPPSIEI 80 (512)
Q Consensus 4 c~GlPLai~~~g~~L~-~~-~~~~W~~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~~~-k~cfl~~a~fp~~~~i 80 (512)
|+|+||||+++|+.|+ +. +.++|+.+ .. ..+..+|+ +||+.||++. |+||+|||+||+++.|
T Consensus 323 CgGLPLALkLaGs~Lr~k~~s~eeW~~~-------~~------~~I~aaLe--lSYd~Lp~eelK~cFL~LAIFPed~~I 387 (1221)
T 1vt4_I 323 LTTNPRRLSIIAESIRDGLATWDNWKHV-------NC------DKLTTIIE--SSLNVLEPAEYRKMFDRLSVFPPSAHI 387 (1221)
T ss_dssp CCCCHHHHHHHHHHHHHSCSSHHHHHHC-------SC------HHHHHHHH--HHHHHSCTTHHHHHHHHTTSSCTTSCE
T ss_pred hCCCHHHHHHHHHHHhCCCCCHHHHhcC-------Ch------hHHHHHHH--HHHHhCCHHHHHHHHHHHhCCCCCCCC
Confidence 9999999999999999 64 58899864 11 67999999 9999999999 9999999999999999
Q ss_pred CHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHH
Q 010381 81 STRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSL 140 (512)
Q Consensus 81 ~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~ 140 (512)
+.+.++.+|+++| ++.+..++++|++++||+... ....++|||++++++
T Consensus 388 ~~elLa~LW~aeG------eedAe~~L~eLvdRSLLq~d~-----~~~rYrMHDLllELr 436 (1221)
T 1vt4_I 388 PTILLSLIWFDVI------KSDVMVVVNKLHKYSLVEKQP-----KESTISIPSIYLELK 436 (1221)
T ss_dssp EHHHHHHHHCSSC------SHHHHHHHHHHHTSSSSSBCS-----SSSEEBCCCHHHHHH
T ss_pred CHHHHHHHhcCCC------HHHHHHHHHHHHhhCCEEEeC-----CCCEEEehHHHHHHh
Confidence 9999999999887 235889999999999999842 125799999998865
No 114
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=99.50 E-value=1.2e-16 Score=166.56 Aligned_cols=201 Identities=17% Similarity=0.142 Sum_probs=106.3
Q ss_pred cCccccCeeeecCCCCcccChhhhcCcCCcEEecCCcc--------------ccccchhhhccccCceee-cCCcccCCC
Q 010381 231 ENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSY--------------IDQSPEDIWMMQKLMHLN-FGSITLPAP 295 (512)
Q Consensus 231 ~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~--------------~~~lp~~i~~l~~L~~L~-l~~~~~~~~ 295 (512)
..+++|+.|++++|.++.+|..++++++|+.|+++++. .+..|..++.+++|+.|+ ++.+.+.
T Consensus 346 ~~~~~L~~L~Ls~n~L~~Lp~~i~~l~~L~~L~l~~n~~l~~l~~ll~~~~~~~~~~~~l~~l~~L~~L~~l~~n~~~-- 423 (567)
T 1dce_A 346 ATDEQLFRCELSVEKSTVLQSELESCKELQELEPENKWCLLTIILLMRALDPLLYEKETLQYFSTLKAVDPMRAAYLD-- 423 (567)
T ss_dssp STTTTSSSCCCCHHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHCTGGGHHHHHHHHHHHHHHCGGGHHHHH--
T ss_pred ccCccceeccCChhhHHhhHHHHHHHHHHHHhccccchhhhhHHHHHHhcccccCCHHHHHHHHhcccCcchhhcccc--
Confidence 45667777777777777777777777777777775552 233455667777777776 4443321
Q ss_pred CCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCC
Q 010381 296 PTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQF 375 (512)
Q Consensus 296 ~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~l 375 (512)
.|..+.+.+ .....+. ...|+.|++++| ....+|. ++.+++|+.|++++|.+..+-. .++.+
T Consensus 424 ---------~L~~l~l~~---n~i~~l~-~~~L~~L~Ls~n---~l~~lp~-~~~l~~L~~L~Ls~N~l~~lp~-~~~~l 485 (567)
T 1dce_A 424 ---------DLRSKFLLE---NSVLKME-YADVRVLHLAHK---DLTVLCH-LEQLLLVTHLDLSHNRLRALPP-ALAAL 485 (567)
T ss_dssp ---------HHHHHHHHH---HHHHHHH-HTTCSEEECTTS---CCSSCCC-GGGGTTCCEEECCSSCCCCCCG-GGGGC
T ss_pred ---------hhhhhhhhc---ccccccC-ccCceEEEecCC---CCCCCcC-ccccccCcEeecCcccccccch-hhhcC
Confidence 111111110 0000000 012455555554 2222333 5555556666665554322111 45556
Q ss_pred CCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce-eeeeCCCCCccccEEEecCCCCcceeeeCCC----Cc
Q 010381 376 PPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK-LACVGSGGFPELKVLHLKSMYWLDEWTMGAG----AM 450 (512)
Q Consensus 376 p~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~-~~~~~~~~~~~L~~L~L~~~~~l~~l~~~~~----~l 450 (512)
++|+.|+|++|.+++ +| .++.+++|+.|++++|.+.+.. +.. ++.+++|+.|+|++| .++.+|.... .+
T Consensus 486 -~~L~~L~Ls~N~l~~-lp-~l~~l~~L~~L~Ls~N~l~~~~~p~~--l~~l~~L~~L~L~~N-~l~~~~~~~~~l~~~l 559 (567)
T 1dce_A 486 -RCLEVLQASDNALEN-VD-GVANLPRLQELLLCNNRLQQSAAIQP--LVSCPRLVLLNLQGN-SLCQEEGIQERLAEML 559 (567)
T ss_dssp -TTCCEEECCSSCCCC-CG-GGTTCSSCCEEECCSSCCCSSSTTGG--GGGCTTCCEEECTTS-GGGGSSSCTTHHHHHC
T ss_pred -CCCCEEECCCCCCCC-Cc-ccCCCCCCcEEECCCCCCCCCCCcHH--HhcCCCCCEEEecCC-cCCCCccHHHHHHHHC
Confidence 666666666666654 33 5666666666666666665543 222 455666666666663 3444443222 25
Q ss_pred cccceee
Q 010381 451 PKLESLI 457 (512)
Q Consensus 451 ~~L~~L~ 457 (512)
|+|+.|+
T Consensus 560 p~L~~L~ 566 (567)
T 1dce_A 560 PSVSSIL 566 (567)
T ss_dssp TTCSEEE
T ss_pred cccCccC
Confidence 6666664
No 115
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.49 E-value=1.2e-13 Score=126.97 Aligned_cols=121 Identities=21% Similarity=0.266 Sum_probs=68.3
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
+.++.+++.++.+|..+. ++|++|++++|.++.+ |..+..+++|++|+|++|.+..+|.. +..+++|++|++++|.
T Consensus 22 ~~v~c~~~~l~~ip~~~~--~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~ 99 (229)
T 3e6j_A 22 TTVDCRSKRHASVPAGIP--TNAQILYLHDNQITKLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQ 99 (229)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEeEccCCCcCccCCCCC--CCCCEEEcCCCccCccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCc
Confidence 446666666666665543 6677777777777644 45566677777777777766666643 4667777777777776
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchhcCCCCCCCeEEEecc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~l~~l~~L~~L~l~~~ 336 (512)
+.+..+..+..+++|+.|++++ .+..+|..+..+++|+.|+++++
T Consensus 100 l~~l~~~~~~~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N 145 (229)
T 3e6j_A 100 LTVLPSAVFDRLVHLKELFMCCNKLTELPRGIERLTHLTHLALDQN 145 (229)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCCSCCTTGGGCTTCSEEECCSS
T ss_pred CCccChhHhCcchhhCeEeccCCcccccCcccccCCCCCEEECCCC
Confidence 6533333344444444444443 22233333333444444444433
No 116
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.49 E-value=3e-14 Score=140.60 Aligned_cols=121 Identities=19% Similarity=0.209 Sum_probs=76.7
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hh-cCcCCcEEecCCccccccch-hhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LC-TLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~-~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~ 290 (512)
++++++++.++.+|..+. ..+++|+|++|.++.++.. +. ++++|++|+|++|.+..++. .+.++++|++|++++|
T Consensus 21 ~~l~c~~~~l~~iP~~~~--~~l~~L~Ls~N~l~~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 98 (361)
T 2xot_A 21 NILSCSKQQLPNVPQSLP--SYTALLDLSHNNLSRLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSN 98 (361)
T ss_dssp TEEECCSSCCSSCCSSCC--TTCSEEECCSSCCCEECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEEEeCCCCcCccCccCC--CCCCEEECCCCCCCccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCC
Confidence 467777777777776554 3577788888877766554 33 67788888888887777664 4777788888888877
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CCc-cCchhcCCCCCCCeEEEecc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PIS-CTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~~-~~~~~l~~l~~L~~L~l~~~ 336 (512)
.+....+..+.++++|+.|++++ .+. ..+..+..+++|+.|+++++
T Consensus 99 ~l~~~~~~~~~~l~~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N 146 (361)
T 2xot_A 99 HLHTLDEFLFSDLQALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQN 146 (361)
T ss_dssp CCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred cCCcCCHHHhCCCcCCCEEECCCCcccEECHHHhCCcccCCEEECCCC
Confidence 77544444455555555555553 111 12334455555555555555
No 117
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.48 E-value=1.2e-13 Score=126.17 Aligned_cols=102 Identities=18% Similarity=0.234 Sum_probs=51.8
Q ss_pred CeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeec
Q 010381 211 KYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNF 287 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l 287 (512)
+.|+.|++++|.++.++. .+..+++|++|++++|.++.+ |..+..+++|++|+|++|.+..+|.. +..+++|++|++
T Consensus 32 ~~l~~L~l~~n~i~~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L 111 (220)
T 2v9t_B 32 ETITEIRLEQNTIKVIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFSLQLLLL 111 (220)
T ss_dssp TTCCEEECCSSCCCEECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTTCCEEEC
T ss_pred cCCCEEECCCCcCCCcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCCCCEEEC
Confidence 345555555555553332 455555555555555555533 44455555555555555555555543 344555555555
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
++|.+.+..|..+..+++|+.|+++
T Consensus 112 ~~N~l~~~~~~~~~~l~~L~~L~L~ 136 (220)
T 2v9t_B 112 NANKINCLRVDAFQDLHNLNLLSLY 136 (220)
T ss_dssp CSSCCCCCCTTTTTTCTTCCEEECC
T ss_pred CCCCCCEeCHHHcCCCCCCCEEECC
Confidence 5555544434444444444444444
No 118
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.48 E-value=9.8e-14 Score=126.71 Aligned_cols=100 Identities=10% Similarity=0.097 Sum_probs=43.1
Q ss_pred eEEEEecCCcCCccC--ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchh-hhccccCceeecC
Q 010381 213 LRVLDLGSAVLDQFP--PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFG 288 (512)
Q Consensus 213 L~~L~l~~~~l~~lp--~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~ 288 (512)
+++|++++|.++.++ ..+..+++|++|++++|.++.++. .++.+++|++|+|++|.+..++.. +..+++|++|+++
T Consensus 34 ~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls 113 (220)
T 2v70_A 34 TAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSNRLENVQHKMFKGLESLKTLMLR 113 (220)
T ss_dssp CSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCCCCGGGGTTCSSCCEEECT
T ss_pred CCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCCccCccCHhHhcCCcCCCEEECC
Confidence 344444444444331 224444444444444444443332 344444444444444444444332 3444444444444
Q ss_pred CcccCCCCCCCCCCCCCCCeeecC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSAL 312 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~ 312 (512)
+|.+.+..|..+..+++|+.|+++
T Consensus 114 ~N~l~~~~~~~~~~l~~L~~L~L~ 137 (220)
T 2v70_A 114 SNRITCVGNDSFIGLSSVRLLSLY 137 (220)
T ss_dssp TSCCCCBCTTSSTTCTTCSEEECT
T ss_pred CCcCCeECHhHcCCCccCCEEECC
Confidence 444443333333333333333333
No 119
>3e6j_A Variable lymphocyte receptor diversity region; variable lymphocyte receptors, VLR, leucine-rich repeat, LRR adaptive immunity, immune system; HET: DR2; 1.67A {Petromyzon marinus}
Probab=99.47 E-value=3.6e-13 Score=123.77 Aligned_cols=128 Identities=23% Similarity=0.278 Sum_probs=95.5
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccCc-cccCccccCeeeecCCCCcccChh-hhcCc
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFPP-GLENLFLLKYLKLNIPSLKCLPSQ-LCTLL 257 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp~-~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~ 257 (512)
..++|+.|.+.+|.+. .+ +..|..+++|++|++++|.++.+|. .+..+++|++|++++|.++.+|.. +..++
T Consensus 38 ~~~~L~~L~Ls~n~i~-----~~~~~~~~~l~~L~~L~L~~N~l~~i~~~~~~~l~~L~~L~Ls~N~l~~l~~~~~~~l~ 112 (229)
T 3e6j_A 38 IPTNAQILYLHDNQIT-----KLEPGVFDSLINLKELYLGSNQLGALPVGVFDSLTQLTVLDLGTNQLTVLPSAVFDRLV 112 (229)
T ss_dssp CCTTCSEEECCSSCCC-----CCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCT
T ss_pred CCCCCCEEEcCCCccC-----ccCHHHhhCccCCcEEECCCCCCCCcChhhcccCCCcCEEECCCCcCCccChhHhCcch
Confidence 3577888888888776 33 4444788888888888888886664 467888888888888888876654 57788
Q ss_pred CCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 258 NLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+|++|++++|.+..+|..+..+++|++|++++|.+....+..+..+++|+.+++.+
T Consensus 113 ~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~l~~ 168 (229)
T 3e6j_A 113 HLKELFMCCNKLTELPRGIERLTHLTHLALDQNQLKSIPHGAFDRLSSLTHAYLFG 168 (229)
T ss_dssp TCCEEECCSSCCCSCCTTGGGCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECTT
T ss_pred hhCeEeccCCcccccCcccccCCCCCEEECCCCcCCccCHHHHhCCCCCCEEEeeC
Confidence 88888888888888888888888888888888887644444456666666666654
No 120
>2v70_A SLIT-2, SLIT homolog 2 protein N-product; neurogenesis, glycoprotein, secreted, chemotaxis, LRR structural protein, differentiation; HET: NAG; 3.01A {Homo sapiens}
Probab=99.45 E-value=2.1e-13 Score=124.51 Aligned_cols=151 Identities=17% Similarity=0.192 Sum_probs=101.8
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccCh--hhhcCcCCcEEecCCccccccch-hhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS--QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~--~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~ 290 (512)
+.++++++.++.+|..+. ..+++|++++|.++.++. .++.+++|++|++++|.++.++. .+.++++|++|++++|
T Consensus 14 ~~l~~s~n~l~~iP~~~~--~~~~~L~L~~N~l~~~~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N 91 (220)
T 2v70_A 14 TTVDCSNQKLNKIPEHIP--QYTAELRLNNNEFTVLEATGIFKKLPQLRKINFSNNKITDIEEGAFEGASGVNEILLTSN 91 (220)
T ss_dssp TEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCEECCCCCGGGCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSS
T ss_pred CEeEeCCCCcccCccCCC--CCCCEEEcCCCcCCccCchhhhccCCCCCEEECCCCcCCEECHHHhCCCCCCCEEECCCC
Confidence 467888888877776553 346788888888876532 36777888888888887777664 5777777777777777
Q ss_pred ccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCccc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVL 370 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l 370 (512)
.+.+ ..+..+..+++|++|+++++. .... .|.
T Consensus 92 ~l~~----------------------~~~~~~~~l~~L~~L~Ls~N~--l~~~--------------------~~~---- 123 (220)
T 2v70_A 92 RLEN----------------------VQHKMFKGLESLKTLMLRSNR--ITCV--------------------GND---- 123 (220)
T ss_dssp CCCC----------------------CCGGGGTTCSSCCEEECTTSC--CCCB--------------------CTT----
T ss_pred ccCc----------------------cCHhHhcCCcCCCEEECCCCc--CCeE--------------------CHh----
Confidence 7642 222334556666666666651 1110 122
Q ss_pred CcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC
Q 010381 371 SEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG 415 (512)
Q Consensus 371 ~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~ 415 (512)
.+..+ ++|+.|+|++|.+++..+..+..+++|+.|++++|.+..
T Consensus 124 ~~~~l-~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~c 167 (220)
T 2v70_A 124 SFIGL-SSVRLLSLYDNQITTVAPGAFDTLHSLSTLNLLANPFNC 167 (220)
T ss_dssp SSTTC-TTCSEEECTTSCCCCBCTTTTTTCTTCCEEECCSCCEEC
T ss_pred HcCCC-ccCCEEECCCCcCCEECHHHhcCCCCCCEEEecCcCCcC
Confidence 55666 778888888888777667778888888888888877653
No 121
>2v9t_B SLIT homolog 2 protein N-product; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} PDB: 2v9s_A
Probab=99.45 E-value=5.3e-13 Score=121.82 Aligned_cols=127 Identities=17% Similarity=0.175 Sum_probs=108.1
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCcC
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLN 258 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~ 258 (512)
.++++.|.+.+|.+. .+ ...|..+++|++|++++|.++.+ |..|..+++|++|++++|.++.+|.. +..+++
T Consensus 31 ~~~l~~L~l~~n~i~-----~i~~~~~~~l~~L~~L~Ls~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~ 105 (220)
T 2v9t_B 31 PETITEIRLEQNTIK-----VIPPGAFSPYKKLRRIDLSNNQISELAPDAFQGLRSLNSLVLYGNKITELPKSLFEGLFS 105 (220)
T ss_dssp CTTCCEEECCSSCCC-----EECTTSSTTCTTCCEEECCSSCCCEECTTTTTTCSSCCEEECCSSCCCCCCTTTTTTCTT
T ss_pred CcCCCEEECCCCcCC-----CcCHhHhhCCCCCCEEECCCCcCCCcCHHHhhCCcCCCEEECCCCcCCccCHhHccCCCC
Confidence 478999999999886 44 43448999999999999999954 78899999999999999999988876 578999
Q ss_pred CcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 259 LQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 259 L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
|++|+|++|.+..++ ..+..+++|++|++++|.+.+..+..+..+++|+.+++.+
T Consensus 106 L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~ 161 (220)
T 2v9t_B 106 LQLLLLNANKINCLRVDAFQDLHNLNLLSLYDNKLQTIAKGTFSPLRAIQTMHLAQ 161 (220)
T ss_dssp CCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCS
T ss_pred CCEEECCCCCCCEeCHHHcCCCCCCCEEECCCCcCCEECHHHHhCCCCCCEEEeCC
Confidence 999999999998874 5688999999999999999766566677777777777764
No 122
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.44 E-value=1.9e-13 Score=119.12 Aligned_cols=132 Identities=19% Similarity=0.155 Sum_probs=94.3
Q ss_pred cCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc-cchhhhccccCce
Q 010381 208 KKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ-SPEDIWMMQKLMH 284 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~ 284 (512)
...++|++|++++|.++ .+|..+..+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+.++++|++
T Consensus 21 ~~~~~L~~L~l~~n~l~~~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~ 99 (168)
T 2ell_A 21 RTPAAVRELVLDNCKSNDGKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNLTH 99 (168)
T ss_dssp SCTTSCSEEECCSCBCBTTBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTCCE
T ss_pred CCcccCCEEECCCCCCChhhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCCCE
Confidence 44578999999999887 8888888899999999999988877 678888999999999998877 7777777999999
Q ss_pred eecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH---HhccCCCCCcEEEecc
Q 010381 285 LNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS---KSLCKLQKLEWLKLVN 361 (512)
Q Consensus 285 L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~l~~L~~L~l~~ 361 (512)
|++++|.+.+ +| .+..+..+++|+.|++++|. .....+ ..+..+++|+.|++++
T Consensus 100 L~Ls~N~l~~-~~--------------------~~~~l~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~~ 156 (168)
T 2ell_A 100 LNLSGNKLKD-IS--------------------TLEPLKKLECLKSLDLFNCE--VTNLNDYRESVFKLLPQLTYLDGYD 156 (168)
T ss_dssp EECBSSSCCS-SG--------------------GGGGGSSCSCCCEEECCSSG--GGTSTTHHHHHHTTCSSCCEETTEE
T ss_pred EeccCCccCc-ch--------------------hHHHHhcCCCCCEEEeeCCc--CcchHHHHHHHHHhCccCcEecCCC
Confidence 9999888742 11 11345556666666666662 221111 2455566666666655
Q ss_pred CC
Q 010381 362 ES 363 (512)
Q Consensus 362 ~~ 363 (512)
|.
T Consensus 157 n~ 158 (168)
T 2ell_A 157 RE 158 (168)
T ss_dssp TT
T ss_pred CC
Confidence 43
No 123
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.44 E-value=1.6e-13 Score=117.13 Aligned_cols=129 Identities=16% Similarity=0.149 Sum_probs=96.1
Q ss_pred cCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccc-cchhhhccccCce
Q 010381 208 KKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQ-SPEDIWMMQKLMH 284 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~-lp~~i~~l~~L~~ 284 (512)
...++|+.|++++|.++ .+|..++.+++|++|++++|.++.+ ..++.+++|++|++++|.+.. +|..+..+++|++
T Consensus 14 ~~~~~l~~L~l~~n~l~~~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L~~ 92 (149)
T 2je0_A 14 RTPSDVKELVLDNSRSNEGKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNLTH 92 (149)
T ss_dssp CCGGGCSEEECTTCBCBTTBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTCCE
T ss_pred CCCccCeEEEccCCcCChhHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCCCE
Confidence 44578999999999988 8888888999999999999988877 678889999999999998877 7777778999999
Q ss_pred eecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH---HhccCCCCCcEEEec
Q 010381 285 LNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS---KSLCKLQKLEWLKLV 360 (512)
Q Consensus 285 L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~---~~l~~l~~L~~L~l~ 360 (512)
|++++|.+.+ ...+..++.+++|+.|++++|. .....+ ..+..+++|+.|+++
T Consensus 93 L~ls~N~i~~---------------------~~~~~~~~~l~~L~~L~l~~N~--l~~~~~~~~~~~~~l~~L~~L~l~ 148 (149)
T 2je0_A 93 LNLSGNKIKD---------------------LSTIEPLKKLENLKSLDLFNCE--VTNLNDYRENVFKLLPQLTYLDGY 148 (149)
T ss_dssp EECTTSCCCS---------------------HHHHGGGGGCTTCCEEECTTCG--GGGSTTHHHHHHHHCTTCCEETTB
T ss_pred EECCCCcCCC---------------------hHHHHHHhhCCCCCEEeCcCCc--ccchHHHHHHHHHHCCCcccccCC
Confidence 9999988742 1122445666666777776662 222211 356667777777664
No 124
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.42 E-value=6.9e-13 Score=129.02 Aligned_cols=285 Identities=12% Similarity=0.060 Sum_probs=180.9
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhc-----
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCT----- 255 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~----- 255 (512)
...+++.|.+.++-.. .++..+...+++|++|||++|.+......-+.++.++++.+..+.|.. ..+.+
T Consensus 23 ~~~~l~~L~l~g~i~~----~~~~~l~~~l~~L~~LdLs~n~i~~~~~~~~~~~~~~~~~~~~~~I~~--~aF~~~~~~~ 96 (329)
T 3sb4_A 23 EANSITHLTLTGKLNA----EDFRHLRDEFPSLKVLDISNAEIKMYSGKAGTYPNGKFYIYMANFVPA--YAFSNVVNGV 96 (329)
T ss_dssp HHHHCSEEEEEEEECH----HHHHHHHHSCTTCCEEEEEEEEECCEEESSSSSGGGCCEEECTTEECT--TTTEEEETTE
T ss_pred hhCceeEEEEeccccH----HHHHHHHHhhccCeEEecCcceeEEecCccccccccccccccccccCH--HHhccccccc
Confidence 4567888888875332 134455233888999999999887211112233345566555553321 23455
Q ss_pred ---CcCCcEEecCCccccccchh-hhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCC-----C-ccCchhcCCC
Q 010381 256 ---LLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHP-----I-SCTPDILGRL 325 (512)
Q Consensus 256 ---l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~-----~-~~~~~~l~~l 325 (512)
+++|+.++|.. .++.+++. +..|++|+.+++.+|.+....+..+..+.++..+..... . ......+..+
T Consensus 97 ~~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~ 175 (329)
T 3sb4_A 97 TKGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEG 175 (329)
T ss_dssp EEECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEES
T ss_pred ccccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhccccccccccccc
Confidence 89999999988 77777754 778999999999888876555666777666666655431 0 0111223455
Q ss_pred CCCC-eEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCC-CcccCc-CCCCCCccEEEEecccCCCCCCCCCCCCcc
Q 010381 326 PNIQ-TLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPS-RMVLSE-YQFPPSLTHLSLSNTELKEDPMPTLEKLPY 402 (512)
Q Consensus 326 ~~L~-~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~-L~~l~~-~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~ 402 (512)
.+|+ .+.+.... .....+...-....++..+.+.++.... .. .+ ..+ ++|+.|+|++|.++......|.++++
T Consensus 176 ~~L~~~i~~~~~~-~l~~~~~~~~~~~~~~~~l~~~~~l~~~~~~--~l~~~~-~~L~~l~L~~n~i~~I~~~aF~~~~~ 251 (329)
T 3sb4_A 176 EPLETTIQVGAMG-KLEDEIMKAGLQPRDINFLTIEGKLDNADFK--LIRDYM-PNLVSLDISKTNATTIPDFTFAQKKY 251 (329)
T ss_dssp CCCEEEEEECTTC-CHHHHHHHTTCCGGGCSEEEEEECCCHHHHH--HHHHHC-TTCCEEECTTBCCCEECTTTTTTCTT
T ss_pred cccceeEEecCCC-cHHHHHhhcccCccccceEEEeeeecHHHHH--HHHHhc-CCCeEEECCCCCcceecHhhhhCCCC
Confidence 5666 55554432 1222222222245566777776532110 00 01 125 88999999988887777778999999
Q ss_pred cceeEEEcccccCceeeeeCCCCCcccc-EEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCCCCCCcE
Q 010381 403 VQVLKLKQNSYLGRKLACVGSGGFPELK-VLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRK 479 (512)
Q Consensus 403 L~~L~l~~~~~~~~~~~~~~~~~~~~L~-~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~ 479 (512)
|+.+.+.+| +. .+.... +.++++|+ .+.+.+ .++.++ ..+.++++|+.+++.++. ++.++. .+.++++|+.
T Consensus 252 L~~l~l~~n-i~-~I~~~a-F~~~~~L~~~l~l~~--~l~~I~~~aF~~c~~L~~l~l~~n~-i~~I~~~aF~~~~~L~~ 325 (329)
T 3sb4_A 252 LLKIKLPHN-LK-TIGQRV-FSNCGRLAGTLELPA--SVTAIEFGAFMGCDNLRYVLATGDK-ITTLGDELFGNGVPSKL 325 (329)
T ss_dssp CCEEECCTT-CC-EECTTT-TTTCTTCCEEEEECT--TCCEECTTTTTTCTTEEEEEECSSC-CCEECTTTTCTTCCCCE
T ss_pred CCEEECCcc-cc-eehHHH-hhCChhccEEEEEcc--cceEEchhhhhCCccCCEEEeCCCc-cCccchhhhcCCcchhh
Confidence 999999866 32 233333 78889999 999987 577775 567889999999998776 554444 7888999998
Q ss_pred EEc
Q 010381 480 LDL 482 (512)
Q Consensus 480 L~l 482 (512)
++.
T Consensus 326 ly~ 328 (329)
T 3sb4_A 326 IYK 328 (329)
T ss_dssp EEC
T ss_pred hcc
Confidence 864
No 125
>2je0_A Acidic leucine-rich nuclear phosphoprotein 32 FAM member A; nuclear protein; 2.40A {Homo sapiens} PDB: 2je1_A
Probab=99.42 E-value=1.1e-13 Score=118.20 Aligned_cols=127 Identities=19% Similarity=0.189 Sum_probs=95.2
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcc-cChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKC-LPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 259 (512)
..++++.|.+.++.+.. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++.+++|
T Consensus 15 ~~~~l~~L~l~~n~l~~---~~~~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~n~i~~~~~~~~~~l~~L 90 (149)
T 2je0_A 15 TPSDVKELVLDNSRSNE---GKLEGLTDEFEELEFLSTINVGLTSI-ANLPKLNKLKKLELSDNRVSGGLEVLAEKCPNL 90 (149)
T ss_dssp CGGGCSEEECTTCBCBT---TBCCSCCTTCTTCCEEECTTSCCCCC-TTCCCCTTCCEEECCSSCCCSCTHHHHHHCTTC
T ss_pred CCccCeEEEccCCcCCh---hHHHHHHhhcCCCcEEECcCCCCCCc-hhhhcCCCCCEEECCCCcccchHHHHhhhCCCC
Confidence 34678888888876641 13433447888899999999888866 678888899999999998886 77777778999
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcccCCCCC---CCCCCCCCCCeeec
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPT---NYSSSLKNLIFVSA 311 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~l~l 311 (512)
++|++++|.++.+| ..+..+++|++|++++|.+.+..+ ..++.+++|+.+++
T Consensus 91 ~~L~ls~N~i~~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l 147 (149)
T 2je0_A 91 THLNLSGNKIKDLSTIEPLKKLENLKSLDLFNCEVTNLNDYRENVFKLLPQLTYLDG 147 (149)
T ss_dssp CEEECTTSCCCSHHHHGGGGGCTTCCEEECTTCGGGGSTTHHHHHHHHCTTCCEETT
T ss_pred CEEECCCCcCCChHHHHHHhhCCCCCEEeCcCCcccchHHHHHHHHHHCCCcccccC
Confidence 99999999887765 678888999999999888764332 24555666665554
No 126
>2ell_A Acidic leucine-rich nuclear phosphoprotein 32 FAM B; phapi2 protein, silver-stainable protein SSP29, acidic prote in leucines, structural genomics; NMR {Homo sapiens} PDB: 2rr6_A 2jqd_A
Probab=99.42 E-value=2.7e-13 Score=118.18 Aligned_cols=128 Identities=18% Similarity=0.170 Sum_probs=80.4
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcc-cChhhhcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKC-LPSQLCTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~-lp~~~~~l~~L 259 (512)
..++++.|.+.++.+.. ..++..+..+++|++|++++|.++.+ ..++.+++|++|++++|.++. +|..++++++|
T Consensus 22 ~~~~L~~L~l~~n~l~~---~~i~~~~~~l~~L~~L~l~~n~l~~~-~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 97 (168)
T 2ell_A 22 TPAAVRELVLDNCKSND---GKIEGLTAEFVNLEFLSLINVGLISV-SNLPKLPKLKKLELSENRIFGGLDMLAEKLPNL 97 (168)
T ss_dssp CTTSCSEEECCSCBCBT---TBCSSCCGGGGGCCEEEEESSCCCCC-SSCCCCSSCCEEEEESCCCCSCCCHHHHHCTTC
T ss_pred CcccCCEEECCCCCCCh---hhHHHHHHhCCCCCEEeCcCCCCCCh-hhhccCCCCCEEECcCCcCchHHHHHHhhCCCC
Confidence 34566677776665531 13333336667777777777777655 566777777777777777775 66666667777
Q ss_pred cEEecCCccccccc--hhhhccccCceeecCCcccCCCCC---CCCCCCCCCCeeecC
Q 010381 260 QTLQMPSSYIDQSP--EDIWMMQKLMHLNFGSITLPAPPT---NYSSSLKNLIFVSAL 312 (512)
Q Consensus 260 ~~L~L~~~~~~~lp--~~i~~l~~L~~L~l~~~~~~~~~p---~~~~~l~~L~~l~l~ 312 (512)
++|++++|.++.+| ..+..+++|++|++++|.+.+..+ ..+..+++|+.|++.
T Consensus 98 ~~L~Ls~N~l~~~~~~~~l~~l~~L~~L~l~~N~l~~~~~~~~~~~~~l~~L~~L~l~ 155 (168)
T 2ell_A 98 THLNLSGNKLKDISTLEPLKKLECLKSLDLFNCEVTNLNDYRESVFKLLPQLTYLDGY 155 (168)
T ss_dssp CEEECBSSSCCSSGGGGGGSSCSCCCEEECCSSGGGTSTTHHHHHHTTCSSCCEETTE
T ss_pred CEEeccCCccCcchhHHHHhcCCCCCEEEeeCCcCcchHHHHHHHHHhCccCcEecCC
Confidence 77777777776665 556777777777777777653222 134444444444443
No 127
>1z6t_A APAF-1, apoptotic protease activating factor 1; caspase activation, ADP, nucleotide binding, CARD, apoptosis; HET: ADP; 2.21A {Homo sapiens}
Probab=99.39 E-value=2e-13 Score=143.96 Aligned_cols=128 Identities=20% Similarity=0.302 Sum_probs=104.3
Q ss_pred CCCCCchhHHHHhhhccc-CCCHHHHHHHHHHcCCCCCcc-----ccCCCCHHHHHhhhcccCCCCcchhhHhhhhcccC
Q 010381 2 ENGEKIRLDSVLIGGPLI-RLKHEAWQFFILHYGSMPLEN-----YLQGETIPTILSRICSVLELPFHLKICCIYLCVFP 75 (512)
Q Consensus 2 ~~c~GlPLai~~~g~~L~-~~~~~~W~~~l~~l~~~~~~~-----~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a~fp 75 (512)
++|+|+||||+.+|+.|+ +. .+|+.+++.+....... ......+..++. .||+.||++.|.||+++|+||
T Consensus 315 ~~~~G~PLal~~~a~~l~~~~--~~w~~~l~~l~~~~~~~~~~~~~~~~~~l~~~l~--~s~~~L~~~~~~~l~~la~f~ 390 (591)
T 1z6t_A 315 KECKGSPLVVSLIGALLRDFP--NRWEYYLKQLQNKQFKRIRKSSSYDYEALDEAMS--ISVEMLREDIKDYYTDLSILQ 390 (591)
T ss_dssp HHHTTCHHHHHHHHHHHHHST--TCHHHHHHHHHSCCCCCSSCCCSSCCHHHHHHHH--HHHHTSCTTTHHHHHHGGGCC
T ss_pred HHhCCCcHHHHHHHHHHhcCc--hhHHHHHHHHHHhHHHHhhhccccchHHHHHHHH--HHHHhCCHHHHHHHHHccccC
Confidence 579999999999999999 54 47998888776443200 000036889999 999999999999999999999
Q ss_pred CCceeCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEcCHHHHHHHHHh
Q 010381 76 PSIEISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYFPSIVDTSLFLV 143 (512)
Q Consensus 76 ~~~~i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~mhdli~~~~~~~ 143 (512)
+|+.|+.+.+..+|.++ ...+..+++.|+++++|+.... +....++||++++++++..
T Consensus 391 ~~~~i~~~~l~~l~~~~-------~~~~~~~l~~L~~~~Ll~~~~~---~~~~~~~~H~lv~~~~~~~ 448 (591)
T 1z6t_A 391 KDVKVPTKVLCILWDME-------TEEVEDILQEFVNKSLLFCDRN---GKSFRYYLHDLQVDFLTEK 448 (591)
T ss_dssp TTCCEEHHHHHHHHTCC-------HHHHHHHHHHHHHTTSSEEEEE---TTEEEEECCHHHHHHHHHH
T ss_pred CCCccCHHHHHHHhccC-------HHHHHHHHHHHHhCcCeEEecC---CCccEEEEcHHHHHHHHhh
Confidence 99999999999999543 3457889999999999986552 3346799999999999876
No 128
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=5.4e-13 Score=117.22 Aligned_cols=126 Identities=18% Similarity=0.227 Sum_probs=65.8
Q ss_pred cCCCeeEEEEecCCcCCccCccccCcc-ccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhh-hccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLF-LLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDI-WMMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~-~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i-~~l~~L~~L 285 (512)
.++.+|++|++++|.++.+|. +..+. +|++|++++|.++.+ ..++.+++|++|++++|.+..+|..+ ..+++|++|
T Consensus 16 ~~~~~L~~L~l~~n~l~~i~~-~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L 93 (176)
T 1a9n_A 16 TNAVRDRELDLRGYKIPVIEN-LGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDLTEL 93 (176)
T ss_dssp ECTTSCEEEECTTSCCCSCCC-GGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTCCEE
T ss_pred CCcCCceEEEeeCCCCchhHH-hhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCCCEE
Confidence 445556666666665555443 33333 566666666655554 34555566666666666555555433 556666666
Q ss_pred ecCCcccCCCCCC--CCCCCCCCCeeecCC-CCccCch----hcCCCCCCCeEEEecc
Q 010381 286 NFGSITLPAPPTN--YSSSLKNLIFVSALH-PISCTPD----ILGRLPNIQTLRISGD 336 (512)
Q Consensus 286 ~l~~~~~~~~~p~--~~~~l~~L~~l~l~~-~~~~~~~----~l~~l~~L~~L~l~~~ 336 (512)
++++|.+. .+|. .++.+++|+.+++++ .+...+. .+..+++|+.|+++.+
T Consensus 94 ~L~~N~i~-~~~~~~~l~~l~~L~~L~l~~N~i~~~~~~~~~~~~~l~~L~~Ld~~~n 150 (176)
T 1a9n_A 94 ILTNNSLV-ELGDLDPLASLKSLTYLCILRNPVTNKKHYRLYVIYKVPQVRVLDFQKV 150 (176)
T ss_dssp ECCSCCCC-CGGGGGGGGGCTTCCEEECCSSGGGGSTTHHHHHHHHCTTCSEETTEEC
T ss_pred ECCCCcCC-cchhhHhhhcCCCCCEEEecCCCCCCcHhHHHHHHHHCCccceeCCCcC
Confidence 66665552 2332 333344444444432 1122333 2566777777777766
No 129
>1a9n_A U2A', U2A'; complex (nuclear protein/RNA), RNA, snRNP, ribonucleoprotein, RNA binding protein/RNA complex; 2.38A {Homo sapiens} SCOP: c.10.2.4
Probab=99.38 E-value=8.2e-13 Score=116.06 Aligned_cols=126 Identities=13% Similarity=0.111 Sum_probs=103.7
Q ss_pred CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhh-hcCcCC
Q 010381 181 SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQL-CTLLNL 259 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~-~~l~~L 259 (512)
.+++++.|.+.+|.+. .++.+....++|++|++++|.++.+ +.++.+++|++|++++|.++.+|..+ +.+++|
T Consensus 17 ~~~~L~~L~l~~n~l~-----~i~~~~~~~~~L~~L~Ls~N~l~~~-~~l~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L 90 (176)
T 1a9n_A 17 NAVRDRELDLRGYKIP-----VIENLGATLDQFDAIDFSDNEIRKL-DGFPLLRRLKTLLVNNNRICRIGEGLDQALPDL 90 (176)
T ss_dssp CTTSCEEEECTTSCCC-----SCCCGGGGTTCCSEEECCSSCCCEE-CCCCCCSSCCEEECCSSCCCEECSCHHHHCTTC
T ss_pred CcCCceEEEeeCCCCc-----hhHHhhhcCCCCCEEECCCCCCCcc-cccccCCCCCEEECCCCcccccCcchhhcCCCC
Confidence 6788999999988776 3344533445899999999998877 67888999999999999999887665 889999
Q ss_pred cEEecCCccccccch--hhhccccCceeecCCcccCCCCCCC----CCCCCCCCeeecCC
Q 010381 260 QTLQMPSSYIDQSPE--DIWMMQKLMHLNFGSITLPAPPTNY----SSSLKNLIFVSALH 313 (512)
Q Consensus 260 ~~L~L~~~~~~~lp~--~i~~l~~L~~L~l~~~~~~~~~p~~----~~~l~~L~~l~l~~ 313 (512)
++|++++|.++.+|. .+..+++|++|++++|.+. .+|.. +..+++|+.+++..
T Consensus 91 ~~L~L~~N~i~~~~~~~~l~~l~~L~~L~l~~N~i~-~~~~~~~~~~~~l~~L~~Ld~~~ 149 (176)
T 1a9n_A 91 TELILTNNSLVELGDLDPLASLKSLTYLCILRNPVT-NKKHYRLYVIYKVPQVRVLDFQK 149 (176)
T ss_dssp CEEECCSCCCCCGGGGGGGGGCTTCCEEECCSSGGG-GSTTHHHHHHHHCTTCSEETTEE
T ss_pred CEEECCCCcCCcchhhHhhhcCCCCCEEEecCCCCC-CcHhHHHHHHHHCCccceeCCCc
Confidence 999999998888886 7888999999999999886 55664 78889999998874
No 130
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}
Probab=99.36 E-value=9.3e-13 Score=129.81 Aligned_cols=126 Identities=16% Similarity=0.143 Sum_probs=77.3
Q ss_pred CCCeeEEEEecCCcchhhhcch-hHHhc-CCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCc
Q 010381 182 DMYLQSFLNHSSESDRLARIDC-ENFCK-KFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLL 257 (512)
Q Consensus 182 ~~~Lr~L~l~~~~~~~~~~~~~-~~~~~-~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~ 257 (512)
.+.++.|++++|.+. .+ ...+. .+++|++|++++|.++.++ ..|..+++|++|+|++|.++.+|. .+..++
T Consensus 38 ~~~l~~L~Ls~N~l~-----~l~~~~~~~~l~~L~~L~L~~N~i~~i~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~ 112 (361)
T 2xot_A 38 PSYTALLDLSHNNLS-----RLRAEWTPTRLTNLHSLLLSHNHLNFISSEAFVPVPNLRYLDLSSNHLHTLDEFLFSDLQ 112 (361)
T ss_dssp CTTCSEEECCSSCCC-----EECTTSSSSCCTTCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCEECTTTTTTCT
T ss_pred CCCCCEEECCCCCCC-----ccChhhhhhcccccCEEECCCCcCCccChhhccCCCCCCEEECCCCcCCcCCHHHhCCCc
Confidence 345667777777665 23 33334 6677777777777776444 456677777777777777775544 356677
Q ss_pred CCcEEecCCcccccc-chhhhccccCceeecCCcccCCCCCCCC----CCCCCCCeeecCC
Q 010381 258 NLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSITLPAPPTNYS----SSLKNLIFVSALH 313 (512)
Q Consensus 258 ~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~~~~~~~p~~~----~~l~~L~~l~l~~ 313 (512)
+|++|+|++|.+..+ |..+..+++|++|++++|.+.. +|..+ .++++|+.|++++
T Consensus 113 ~L~~L~L~~N~i~~~~~~~~~~l~~L~~L~L~~N~l~~-l~~~~~~~~~~l~~L~~L~L~~ 172 (361)
T 2xot_A 113 ALEVLLLYNNHIVVVDRNAFEDMAQLQKLYLSQNQISR-FPVELIKDGNKLPKLMLLDLSS 172 (361)
T ss_dssp TCCEEECCSSCCCEECTTTTTTCTTCCEEECCSSCCCS-CCGGGTC----CTTCCEEECCS
T ss_pred CCCEEECCCCcccEECHHHhCCcccCCEEECCCCcCCe-eCHHHhcCcccCCcCCEEECCC
Confidence 777777777766655 3456667777777777776653 33322 4456666666654
No 131
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.35 E-value=6.4e-12 Score=112.00 Aligned_cols=121 Identities=21% Similarity=0.286 Sum_probs=81.0
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCccc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 292 (512)
++++++++.++.+|..+. .+|++|++++|.++.+|..+.++++|++|++++|.++.++. .+.++++|++|++++|.+
T Consensus 13 ~~l~~~~~~l~~ip~~~~--~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l 90 (193)
T 2wfh_A 13 TVVRCSNKGLKVLPKGIP--RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRL 90 (193)
T ss_dssp TEEECTTSCCSSCCSCCC--TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCC
T ss_pred CEEEcCCCCCCcCCCCCC--CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCcc
Confidence 456777777777776543 46777777777777777777777777777777777766653 466777777777777777
Q ss_pred CCCCCCCCCCCCCCCeeecCC-CCccCch-hcCCCCCCCeEEEecc
Q 010381 293 PAPPTNYSSSLKNLIFVSALH-PISCTPD-ILGRLPNIQTLRISGD 336 (512)
Q Consensus 293 ~~~~p~~~~~l~~L~~l~l~~-~~~~~~~-~l~~l~~L~~L~l~~~ 336 (512)
....|..+..+++|+.|++++ .+...+. .+..+++|+.|+++++
T Consensus 91 ~~i~~~~f~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (193)
T 2wfh_A 91 RCIPPRTFDGLKSLRLLSLHGNDISVVPEGAFNDLSALSHLAIGAN 136 (193)
T ss_dssp CBCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECCSS
T ss_pred CEeCHHHhCCCCCCCEEECCCCCCCeeChhhhhcCccccEEEeCCC
Confidence 655555666677777777664 2233333 3556666666666655
No 132
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.34 E-value=3.8e-12 Score=113.48 Aligned_cols=121 Identities=17% Similarity=0.223 Sum_probs=64.9
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChh--hhcCcCCcEEecCCcccccc-chhhhccccCceeecCCc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ--LCTLLNLQTLQMPSSYIDQS-PEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~--~~~l~~L~~L~L~~~~~~~l-p~~i~~l~~L~~L~l~~~ 290 (512)
++++++++.++.+|..+.. +|++|++++|.++.++.. ++.+++|++|++++|.++.+ |..+.++++|++|++++|
T Consensus 11 ~~l~~s~~~l~~ip~~~~~--~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N 88 (192)
T 1w8a_A 11 TTVDCTGRGLKEIPRDIPL--HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGEN 88 (192)
T ss_dssp TEEECTTSCCSSCCSCCCT--TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSC
T ss_pred CEEEcCCCCcCcCccCCCC--CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCC
Confidence 4556666666666654433 566666666666655442 55666666666666655554 445566666666666666
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC-CC-ccCchhcCCCCCCCeEEEecc
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH-PI-SCTPDILGRLPNIQTLRISGD 336 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~-~~-~~~~~~l~~l~~L~~L~l~~~ 336 (512)
.+.+..|..+.++++|+.|++++ .+ ...+..+..+++|+.|+++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N 136 (192)
T 1w8a_A 89 KIKEISNKMFLGLHQLKTLNLYDNQISCVMPGSFEHLNSLTSLNLASN 136 (192)
T ss_dssp CCCEECSSSSTTCTTCCEEECCSSCCCEECTTSSTTCTTCCEEECTTC
T ss_pred cCCccCHHHhcCCCCCCEEECCCCcCCeeCHHHhhcCCCCCEEEeCCC
Confidence 66544444455555555555543 11 112333444444555544444
No 133
>4b8c_D Glucose-repressible alcohol dehydrogenase transcr effector; hydrolase-cell cycle complex; 3.41A {Saccharomyces cerevisiae S288C}
Probab=99.34 E-value=6.6e-14 Score=150.35 Aligned_cols=193 Identities=11% Similarity=0.071 Sum_probs=94.7
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEE-----EecCCcCCccCccccCccccCeeeecCCCCcccChhhh
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVL-----DLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLC 254 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L-----~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~ 254 (512)
..+.++.|.+.++.... . ..+ .....|+.+ ++..+.+...|+.+..+.+|+.|+|++|.+..+|..+.
T Consensus 171 s~~~~~~l~L~~n~~~~-----~~~~~-l~~l~Ls~~~i~~~~~~~n~~~~~~~~~~~l~~L~~L~Ls~n~l~~l~~~~~ 244 (727)
T 4b8c_D 171 STPLTPKIELFANGKDE-----ANQAL-LQHKKLSQYSIDEDDDIENRMVMPKDSKYDDQLWHALDLSNLQIFNISANIF 244 (727)
T ss_dssp ---------------------------------------------------------CCCCCCEEECTTSCCSCCCGGGG
T ss_pred cCCccceEEeeCCCCCc-----chhhH-hhcCccCcccccCccccccceecChhhhccCCCCcEEECCCCCCCCCChhhc
Confidence 34667777777766542 1 111 122222222 22333334456667778888888888888888888788
Q ss_pred cCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEe
Q 010381 255 TLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRIS 334 (512)
Q Consensus 255 ~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~ 334 (512)
++++|++|+|++|.+..+|..++++++|++|+|++|.+. .+|..++.+++|+.|+++
T Consensus 245 ~l~~L~~L~Ls~N~l~~lp~~~~~l~~L~~L~Ls~N~l~-----------------------~lp~~~~~l~~L~~L~L~ 301 (727)
T 4b8c_D 245 KYDFLTRLYLNGNSLTELPAEIKNLSNLRVLDLSHNRLT-----------------------SLPAELGSCFQLKYFYFF 301 (727)
T ss_dssp GCCSCSCCBCTTSCCSCCCGGGGGGTTCCEEECTTSCCS-----------------------SCCSSGGGGTTCSEEECC
T ss_pred CCCCCCEEEeeCCcCcccChhhhCCCCCCEEeCcCCcCC-----------------------ccChhhcCCCCCCEEECC
Confidence 888888888888877788887888888888888888774 334456777888899998
Q ss_pred ccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcc
Q 010381 335 GDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQN 411 (512)
Q Consensus 335 ~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~ 411 (512)
+| ....+|..++.+++|+.|+|++|.+...-.-.+..+......+++++|.+.+..|.. |+.|+++.|
T Consensus 302 ~N---~l~~lp~~~~~l~~L~~L~L~~N~l~~~~p~~~~~~~~~~~~l~l~~N~l~~~~p~~------l~~l~l~~n 369 (727)
T 4b8c_D 302 DN---MVTTLPWEFGNLCNLQFLGVEGNPLEKQFLKILTEKSVTGLIFYLRDNRPEIPLPHE------RRFIEINTD 369 (727)
T ss_dssp SS---CCCCCCSSTTSCTTCCCEECTTSCCCSHHHHHHHHHHHHHHHHHHHHCCCCCCCCCC---------------
T ss_pred CC---CCCccChhhhcCCCccEEeCCCCccCCCChHHHhhcchhhhHHhhccCcccCcCccc------cceeEeecc
Confidence 88 334667677777788888887776532000011111011123556667666555433 444455544
No 134
>1w8a_A SLIT protein; signaling protein, secreted protein, AXON guidance, leucine-rich repeat glycoprotein, EGF-like domain, signal protein; 2.8A {Drosophila melanogaster} SCOP: c.10.2.7
Probab=99.28 E-value=6.5e-12 Score=111.94 Aligned_cols=102 Identities=18% Similarity=0.147 Sum_probs=78.9
Q ss_pred eeEEEEecCCcCCccCc--cccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeec
Q 010381 212 YLRVLDLGSAVLDQFPP--GLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNF 287 (512)
Q Consensus 212 ~L~~L~l~~~~l~~lp~--~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l 287 (512)
.|++|++++|.++.++. .++.+++|++|++++|.++.+ |..++.+++|++|+|++|.+..++.. +..+++|++|++
T Consensus 30 ~l~~L~l~~n~i~~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~L 109 (192)
T 1w8a_A 30 HTTELLLNDNELGRISSDGLFGRLPHLVKLELKRNQLTGIEPNAFEGASHIQELQLGENKIKEISNKMFLGLHQLKTLNL 109 (192)
T ss_dssp TCSEEECCSCCCCSBCCSCSGGGCTTCCEEECCSSCCCCBCTTTTTTCTTCCEEECCSCCCCEECSSSSTTCTTCCEEEC
T ss_pred CCCEEECCCCcCCccCCccccccCCCCCEEECCCCCCCCcCHhHcCCcccCCEEECCCCcCCccCHHHhcCCCCCCEEEC
Confidence 67788888888776654 377788888888888888754 66777888888888888877776544 677888888888
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCC
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
++|.+.+..|..+..+++|+.+++++
T Consensus 110 ~~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (192)
T 1w8a_A 110 YDNQISCVMPGSFEHLNSLTSLNLAS 135 (192)
T ss_dssp CSSCCCEECTTSSTTCTTCCEEECTT
T ss_pred CCCcCCeeCHHHhhcCCCCCEEEeCC
Confidence 88888777777788888888888875
No 135
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.28 E-value=4.2e-13 Score=120.42 Aligned_cols=126 Identities=17% Similarity=0.185 Sum_probs=87.3
Q ss_pred cCCCeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeec
Q 010381 208 KKFKYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNF 287 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l 287 (512)
..+++|++|++++|.++.+| .+..+++|++|++++|.++.+|..++.+++|++|++++|.+..+| .+..+++|++|++
T Consensus 45 ~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~~l~-~~~~l~~L~~L~l 122 (198)
T 1ds9_A 45 STLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIASLS-GIEKLVNLRVLYM 122 (198)
T ss_dssp HHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECCCHH-HHHHHHHSSEEEE
T ss_pred hcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCCcCC-ccccCCCCCEEEC
Confidence 67777777777777777766 677777777777777777777776777777777777777777766 4777777777777
Q ss_pred CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH----------HhccCCCCCcEE
Q 010381 288 GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS----------KSLCKLQKLEWL 357 (512)
Q Consensus 288 ~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~----------~~l~~l~~L~~L 357 (512)
++|.+.. ......+..+++|+.|++++| ......| ..+..+++|+.|
T Consensus 123 ~~N~i~~---------------------~~~~~~l~~l~~L~~L~l~~N--~l~~~~~~~~~~~~~~~~~~~~l~~L~~L 179 (198)
T 1ds9_A 123 SNNKITN---------------------WGEIDKLAALDKLEDLLLAGN--PLYNDYKENNATSEYRIEVVKRLPNLKKL 179 (198)
T ss_dssp SEEECCC---------------------HHHHHHHTTTTTCSEEEECSC--HHHHHHHTTTTHHHHHHHHHHHCSSCSEE
T ss_pred CCCcCCc---------------------hhHHHHHhcCCCCCEEEecCC--ccccccccccchHHHHHHHHHhCCCcEEE
Confidence 7776531 111235777888888888888 3333332 236667777776
Q ss_pred E
Q 010381 358 K 358 (512)
Q Consensus 358 ~ 358 (512)
+
T Consensus 180 d 180 (198)
T 1ds9_A 180 D 180 (198)
T ss_dssp C
T ss_pred C
Confidence 5
No 136
>3sb4_A Hypothetical leucine rich repeat protein; LRR, right-handed beta-alpha superhelix, leucine-rich repeat structural genomics; HET: MSE PG4; 1.99A {Bacteroides thetaiotaomicron}
Probab=99.25 E-value=3.1e-11 Score=117.26 Aligned_cols=281 Identities=11% Similarity=-0.043 Sum_probs=179.6
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcchhHHhcCCCeeEEEEecCCcCCccCccccC------
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDCENFCKKFKYLRVLDLGSAVLDQFPPGLEN------ 232 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~~~~~~~~~~L~~L~l~~~~l~~lp~~l~~------ 232 (512)
..+++|.+...-........ .+++|++|+++++.+... .. .- ..++.++.+.+..+.+. +..|.+
T Consensus 25 ~~l~~L~l~g~i~~~~~~~l~~~l~~L~~LdLs~n~i~~~---~~-~~-~~~~~~~~~~~~~~~I~--~~aF~~~~~~~~ 97 (329)
T 3sb4_A 25 NSITHLTLTGKLNAEDFRHLRDEFPSLKVLDISNAEIKMY---SG-KA-GTYPNGKFYIYMANFVP--AYAFSNVVNGVT 97 (329)
T ss_dssp HHCSEEEEEEEECHHHHHHHHHSCTTCCEEEEEEEEECCE---EE-SS-SSSGGGCCEEECTTEEC--TTTTEEEETTEE
T ss_pred CceeEEEEeccccHHHHHHHHHhhccCeEEecCcceeEEe---cC-cc-ccccccccccccccccC--HHHhcccccccc
Confidence 45777888733221111111 378899999999877510 00 00 12222445555554332 133555
Q ss_pred --ccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccchh-hhccccCceeecCCccc----CCCCCCCCCCCC
Q 010381 233 --LFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITL----PAPPTNYSSSLK 304 (512)
Q Consensus 233 --l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~----~~~~p~~~~~l~ 304 (512)
+.+|+.|.+.+ .++.++.. +.+|++|+.+++..+.+..++.. +..+.++..+....... ...-...+.++.
T Consensus 98 ~g~~~L~~l~L~~-~i~~I~~~aF~~~~~L~~l~l~~n~i~~i~~~aF~~~~~l~~l~~~~~~~~~~~~~i~~~~f~~~~ 176 (329)
T 3sb4_A 98 KGKQTLEKVILSE-KIKNIEDAAFKGCDNLKICQIRKKTAPNLLPEALADSVTAIFIPLGSSDAYRFKNRWEHFAFIEGE 176 (329)
T ss_dssp EECTTCCC-CBCT-TCCEECTTTTTTCTTCCEEEBCCSSCCEECTTSSCTTTCEEEECTTCTHHHHTSTTTTTSCEEESC
T ss_pred cccCCCcEEECCc-cccchhHHHhhcCcccceEEcCCCCccccchhhhcCCCceEEecCcchhhhhcccccccccccccc
Confidence 89999999988 88876654 77899999999999887777644 56677777776554211 111223345556
Q ss_pred CCC-eeecCCCCccCchhc----CCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCc
Q 010381 305 NLI-FVSALHPISCTPDIL----GRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSL 379 (512)
Q Consensus 305 ~L~-~l~l~~~~~~~~~~l----~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L 379 (512)
.|+ .+.+... ..++..+ ....+++.+.+.+. ............+++|+.++++.|.+..+..-.+..+ ++|
T Consensus 177 ~L~~~i~~~~~-~~l~~~~~~~~~~~~~~~~l~~~~~--l~~~~~~~l~~~~~~L~~l~L~~n~i~~I~~~aF~~~-~~L 252 (329)
T 3sb4_A 177 PLETTIQVGAM-GKLEDEIMKAGLQPRDINFLTIEGK--LDNADFKLIRDYMPNLVSLDISKTNATTIPDFTFAQK-KYL 252 (329)
T ss_dssp CCEEEEEECTT-CCHHHHHHHTTCCGGGCSEEEEEEC--CCHHHHHHHHHHCTTCCEEECTTBCCCEECTTTTTTC-TTC
T ss_pred ccceeEEecCC-CcHHHHHhhcccCccccceEEEeee--ecHHHHHHHHHhcCCCeEEECCCCCcceecHhhhhCC-CCC
Confidence 664 4444432 2222222 24667788888876 2223333333358999999999876643332267789 999
Q ss_pred cEEEEecccCCCCCCCCCCCCcccc-eeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceeee-CCCCccccceee
Q 010381 380 THLSLSNTELKEDPMPTLEKLPYVQ-VLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWTM-GAGAMPKLESLI 457 (512)
Q Consensus 380 ~~L~L~~~~~~~~~~~~l~~l~~L~-~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~~-~~~~l~~L~~L~ 457 (512)
++|++.++ +.......|.++++|+ .+.+.+ .+.. +.... +.++++|+.+++.+ +.++.++. .+.++++|+.++
T Consensus 253 ~~l~l~~n-i~~I~~~aF~~~~~L~~~l~l~~-~l~~-I~~~a-F~~c~~L~~l~l~~-n~i~~I~~~aF~~~~~L~~ly 327 (329)
T 3sb4_A 253 LKIKLPHN-LKTIGQRVFSNCGRLAGTLELPA-SVTA-IEFGA-FMGCDNLRYVLATG-DKITTLGDELFGNGVPSKLIY 327 (329)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEEEECT-TCCE-ECTTT-TTTCTTEEEEEECS-SCCCEECTTTTCTTCCCCEEE
T ss_pred CEEECCcc-cceehHHHhhCChhccEEEEEcc-cceE-Echhh-hhCCccCCEEEeCC-CccCccchhhhcCCcchhhhc
Confidence 99999987 6666677899999999 999985 4432 22222 78899999999987 57787764 678899999886
Q ss_pred e
Q 010381 458 V 458 (512)
Q Consensus 458 l 458 (512)
.
T Consensus 328 ~ 328 (329)
T 3sb4_A 328 K 328 (329)
T ss_dssp C
T ss_pred c
Confidence 4
No 137
>2wfh_A SLIT homolog 2 protein C-product; developmental protein, neurogenesis, splicing, glycoprotein, leucine-rich repeat, disulfide bond, differentiation; 1.80A {Homo sapiens}
Probab=99.23 E-value=3.3e-11 Score=107.38 Aligned_cols=103 Identities=17% Similarity=0.182 Sum_probs=80.5
Q ss_pred CeeEEEEecCCcCCccCccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccch-hhhccccCceeecC
Q 010381 211 KYLRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFG 288 (512)
Q Consensus 211 ~~L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~ 288 (512)
++|++|++++|.++.+|..+..+++|++|++++|.++.++. .+..+++|++|+|++|.+..++. .+..+++|++|+++
T Consensus 31 ~~l~~L~L~~n~i~~ip~~~~~l~~L~~L~Ls~N~i~~i~~~~f~~l~~L~~L~Ls~N~l~~i~~~~f~~l~~L~~L~L~ 110 (193)
T 2wfh_A 31 RDVTELYLDGNQFTLVPKELSNYKHLTLIDLSNNRISTLSNQSFSNMTQLLTLILSYNRLRCIPPRTFDGLKSLRLLSLH 110 (193)
T ss_dssp TTCCEEECCSSCCCSCCGGGGGCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCBCCTTTTTTCTTCCEEECC
T ss_pred CCCCEEECCCCcCchhHHHhhcccCCCEEECCCCcCCEeCHhHccCCCCCCEEECCCCccCEeCHHHhCCCCCCCEEECC
Confidence 56888888888888888888888888888888888886653 57788888888888888877764 47788888888888
Q ss_pred CcccCCCCCCCCCCCCCCCeeecCC
Q 010381 289 SITLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 289 ~~~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+|.+....+..+..+++|+.+++.+
T Consensus 111 ~N~l~~~~~~~~~~l~~L~~L~L~~ 135 (193)
T 2wfh_A 111 GNDISVVPEGAFNDLSALSHLAIGA 135 (193)
T ss_dssp SSCCCBCCTTTTTTCTTCCEEECCS
T ss_pred CCCCCeeChhhhhcCccccEEEeCC
Confidence 8888654444577888888888875
No 138
>1ds9_A Outer arm dynein; leucine-rich repeat, beta-BETA-alpha cylinder, flagella, contractIle protein; NMR {Chlamydomonas reinhardtii} SCOP: c.10.3.1 PDB: 1m9l_A
Probab=99.20 E-value=1.6e-13 Score=123.12 Aligned_cols=111 Identities=21% Similarity=0.215 Sum_probs=71.1
Q ss_pred ccCccccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCC
Q 010381 225 QFPPGLENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLK 304 (512)
Q Consensus 225 ~lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~ 304 (512)
.+|..++.+++|++|++++|.++.+| .++.+++|++|++++|.+..+|..+..+++|++|++++|.+.
T Consensus 39 ~l~~~~~~l~~L~~L~ls~n~l~~l~-~~~~l~~L~~L~l~~n~l~~l~~~~~~~~~L~~L~L~~N~l~----------- 106 (198)
T 1ds9_A 39 KMDATLSTLKACKHLALSTNNIEKIS-SLSGMENLRILSLGRNLIKKIENLDAVADTLEELWISYNQIA----------- 106 (198)
T ss_dssp CCHHHHHHTTTCSEEECSEEEESCCC-CHHHHTTCCEEEEEEEEECSCSSHHHHHHHCSEEEEEEEECC-----------
T ss_pred hhhHHHhcCCCCCEEECCCCCCcccc-ccccCCCCCEEECCCCCcccccchhhcCCcCCEEECcCCcCC-----------
Confidence 33346777777777777777777776 677777777777777777777766666777777777777653
Q ss_pred CCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHH--HhccCCCCCcEEEeccCC
Q 010381 305 NLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVS--KSLCKLQKLEWLKLVNES 363 (512)
Q Consensus 305 ~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~--~~l~~l~~L~~L~l~~~~ 363 (512)
..+ .++.+++|+.|++++|. ...++ ..+..+++|+.|++++|.
T Consensus 107 ------------~l~-~~~~l~~L~~L~l~~N~---i~~~~~~~~l~~l~~L~~L~l~~N~ 151 (198)
T 1ds9_A 107 ------------SLS-GIEKLVNLRVLYMSNNK---ITNWGEIDKLAALDKLEDLLLAGNP 151 (198)
T ss_dssp ------------CHH-HHHHHHHSSEEEESEEE---CCCHHHHHHHTTTTTCSEEEECSCH
T ss_pred ------------cCC-ccccCCCCCEEECCCCc---CCchhHHHHHhcCCCCCEEEecCCc
Confidence 122 45566677777777762 22222 345556566666655543
No 139
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.19 E-value=1.5e-10 Score=101.62 Aligned_cols=121 Identities=21% Similarity=0.289 Sum_probs=56.1
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccchh-hhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
+.++++++.++.+|..+. ++|++|++++|.++.+|.. ++.+++|++|++++|.++.+|.. +..+++|++|++++|.
T Consensus 10 ~~l~~~~~~l~~~p~~~~--~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~N~ 87 (177)
T 2o6r_A 10 TEIRCNSKGLTSVPTGIP--SSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGVFDKLTKLTILYLHENK 87 (177)
T ss_dssp TEEECCSSCCSSCCTTCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred CEEEecCCCCccCCCCCC--CCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhHccCCCccCEEECCCCC
Confidence 344455554444443322 3455555555555544332 34455555555555555444433 3455555555555555
Q ss_pred cCCCCCCCCCCCCCCCeeecCC-CCccCchh-cCCCCCCCeEEEecc
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH-PISCTPDI-LGRLPNIQTLRISGD 336 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~-~~~~~~~~-l~~l~~L~~L~l~~~ 336 (512)
+.+..+..++++++|+.|++++ .+...+.. +..+++|+.|+++++
T Consensus 88 l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N 134 (177)
T 2o6r_A 88 LQSLPNGVFDKLTQLKELALDTNQLKSVPDGIFDRLTSLQKIWLHTN 134 (177)
T ss_dssp CCCCCTTTTTTCTTCCEEECCSSCCSCCCTTTTTTCTTCCEEECCSS
T ss_pred ccccCHHHhhCCcccCEEECcCCcceEeCHHHhcCCcccCEEEecCC
Confidence 5433333344444444444443 22222222 344555555555555
No 140
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.14 E-value=1.1e-09 Score=108.93 Aligned_cols=240 Identities=11% Similarity=0.090 Sum_probs=141.5
Q ss_pred cCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccC-hhhhcCcCCcEEecCCccccccchhhhccccCcee
Q 010381 208 KKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHL 285 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L 285 (512)
.++ +|+.+.+..+ ++.++ .+|.+ .+|+.+.+.. .++.++ ..+.+|.+|+.+++..+.+..+|.....+.+|+.+
T Consensus 133 ~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~l~~n~l~~I~~~aF~~~~L~~l 208 (401)
T 4fdw_A 133 RNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKADLSKTKITKLPASTFVYAGIEEV 208 (401)
T ss_dssp TTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEECTTSCCSEECTTTTTTCCCSEE
T ss_pred ccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeeecCCCcceEechhhEeecccCEE
Confidence 554 5666666554 54443 23444 3577776664 455443 34666777777777766666666655556667777
Q ss_pred ecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCC
Q 010381 286 NFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKP 365 (512)
Q Consensus 286 ~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p 365 (512)
.+..+ +...-...+.++++|+.+.+..++..+.. ..+.+ .+|+.+.+..+ +.
T Consensus 209 ~lp~~-l~~I~~~aF~~~~~L~~l~l~~~l~~I~~-------------------------~aF~~-~~L~~i~lp~~-i~ 260 (401)
T 4fdw_A 209 LLPVT-LKEIGSQAFLKTSQLKTIEIPENVSTIGQ-------------------------EAFRE-SGITTVKLPNG-VT 260 (401)
T ss_dssp ECCTT-CCEECTTTTTTCTTCCCEECCTTCCEECT-------------------------TTTTT-CCCSEEEEETT-CC
T ss_pred EeCCc-hheehhhHhhCCCCCCEEecCCCccCccc-------------------------ccccc-CCccEEEeCCC-cc
Confidence 66533 32222344555555655555432111111 11222 35555555331 11
Q ss_pred CCcccCcCCCCCCccEEEEecccCC-----CCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCc
Q 010381 366 SRMVLSEYQFPPSLTHLSLSNTELK-----EDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWL 440 (512)
Q Consensus 366 ~L~~l~~~~lp~~L~~L~L~~~~~~-----~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l 440 (512)
.+..-.+..+ ++|+.+.+.++.+. ......|.++++|+.+.+. +.+.. +.... +.++++|+.+.|.. .+
T Consensus 261 ~I~~~aF~~c-~~L~~l~l~~~~~~~~~~~~I~~~aF~~c~~L~~l~l~-~~i~~-I~~~a-F~~c~~L~~l~lp~--~l 334 (401)
T 4fdw_A 261 NIASRAFYYC-PELAEVTTYGSTFNDDPEAMIHPYCLEGCPKLARFEIP-ESIRI-LGQGL-LGGNRKVTQLTIPA--NV 334 (401)
T ss_dssp EECTTTTTTC-TTCCEEEEESSCCCCCTTCEECTTTTTTCTTCCEECCC-TTCCE-ECTTT-TTTCCSCCEEEECT--TC
T ss_pred EEChhHhhCC-CCCCEEEeCCccccCCcccEECHHHhhCCccCCeEEeC-CceEE-Ehhhh-hcCCCCccEEEECc--cc
Confidence 1110156677 78888888776543 2345578889999999998 33332 22222 77889999999965 46
Q ss_pred ceee-eCCCCccccceeeecCCcccCCCCcccCCCC-CCcEEEccCCh
Q 010381 441 DEWT-MGAGAMPKLESLIVDPCAYLRKLPEELWCIQ-SLRKLDLHWPQ 486 (512)
Q Consensus 441 ~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~~~~~l~-~L~~L~l~~~~ 486 (512)
+.+. ..+.++ +|+.+.+.++....-.+..+..++ +++.+++-...
T Consensus 335 ~~I~~~aF~~~-~L~~l~l~~n~~~~l~~~~F~~~~~~l~~l~vp~~~ 381 (401)
T 4fdw_A 335 TQINFSAFNNT-GIKEVKVEGTTPPQVFEKVWYGFPDDITVIRVPAES 381 (401)
T ss_dssp CEECTTSSSSS-CCCEEEECCSSCCBCCCSSCCCSCTTCCEEEECGGG
T ss_pred cEEcHHhCCCC-CCCEEEEcCCCCcccccccccCCCCCccEEEeCHHH
Confidence 7775 456778 999999999864443344566664 78999998765
No 141
>2o6r_A Variable lymphocyte receptor B; leucine-rich repeat protein, LRR, immune system; 2.30A {Eptatretus burgeri}
Probab=99.12 E-value=3.2e-10 Score=99.47 Aligned_cols=125 Identities=22% Similarity=0.242 Sum_probs=93.5
Q ss_pred CcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEE
Q 010381 354 LEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLH 433 (512)
Q Consensus 354 L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~ 433 (512)
.+.++++++.+.. .-..+|++|+.|++++|.+.+..+..++.+++|++|++++|.+....... +..+++|++|+
T Consensus 9 ~~~l~~~~~~l~~----~p~~~~~~l~~L~l~~n~l~~~~~~~~~~l~~L~~L~l~~n~l~~~~~~~--~~~l~~L~~L~ 82 (177)
T 2o6r_A 9 GTEIRCNSKGLTS----VPTGIPSSATRLELESNKLQSLPHGVFDKLTQLTKLSLSQNQIQSLPDGV--FDKLTKLTILY 82 (177)
T ss_dssp TTEEECCSSCCSS----CCTTCCTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTT--TTTCTTCCEEE
T ss_pred CCEEEecCCCCcc----CCCCCCCCCcEEEeCCCcccEeCHHHhcCcccccEEECCCCcceEeChhH--ccCCCccCEEE
Confidence 4566776665443 11223488999999999888766667888999999999988886543322 57789999999
Q ss_pred ecCCCCcceeee-CCCCccccceeeecCCcccCCCCcc-cCCCCCCcEEEccCCh
Q 010381 434 LKSMYWLDEWTM-GAGAMPKLESLIVDPCAYLRKLPEE-LWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 434 L~~~~~l~~l~~-~~~~l~~L~~L~l~~c~~l~~lp~~-~~~l~~L~~L~l~~~~ 486 (512)
++++ .++.++. .+..+++|+.|++++|. ++.+|.. +..+++|++|++++|+
T Consensus 83 l~~N-~l~~~~~~~~~~l~~L~~L~l~~N~-l~~~~~~~~~~l~~L~~L~l~~N~ 135 (177)
T 2o6r_A 83 LHEN-KLQSLPNGVFDKLTQLKELALDTNQ-LKSVPDGIFDRLTSLQKIWLHTNP 135 (177)
T ss_dssp CCSS-CCCCCCTTTTTTCTTCCEEECCSSC-CSCCCTTTTTTCTTCCEEECCSSC
T ss_pred CCCC-CccccCHHHhhCCcccCEEECcCCc-ceEeCHHHhcCCcccCEEEecCCC
Confidence 9984 5666664 35788999999999987 4566654 5789999999999986
No 142
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.11 E-value=4.2e-10 Score=98.35 Aligned_cols=98 Identities=22% Similarity=0.287 Sum_probs=71.7
Q ss_pred EEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCcc
Q 010381 214 RVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSIT 291 (512)
Q Consensus 214 ~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~ 291 (512)
+.++++++.++.+|..+. ++|++|++++|.++.+ |..++++++|++|+|++|.+..+|.. +.++++|++|++++|.
T Consensus 15 ~~l~~~~n~l~~iP~~~~--~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L~L~~N~ 92 (174)
T 2r9u_A 15 TLVNCQNIRLASVPAGIP--TDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQLDLNDNH 92 (174)
T ss_dssp SEEECCSSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEEECCSSC
T ss_pred cEEEeCCCCCCccCCCcC--CCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEEECCCCc
Confidence 567888888887777664 6788888888888855 55677888888888888888777765 4678888888888887
Q ss_pred cCCCCCCCCCCCCCCCeeecCC
Q 010381 292 LPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 292 ~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
+.+..+..+.++++|+.|++++
T Consensus 93 l~~l~~~~~~~l~~L~~L~L~~ 114 (174)
T 2r9u_A 93 LKSIPRGAFDNLKSLTHIYLYN 114 (174)
T ss_dssp CCCCCTTTTTTCTTCSEEECCS
T ss_pred cceeCHHHhccccCCCEEEeCC
Confidence 7643333466666666666664
No 143
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=99.11 E-value=3e-10 Score=98.87 Aligned_cols=99 Identities=20% Similarity=0.257 Sum_probs=76.6
Q ss_pred eEEEEecCCcCCccCccccCccccCeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCc
Q 010381 213 LRVLDLGSAVLDQFPPGLENLFLLKYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSI 290 (512)
Q Consensus 213 L~~L~l~~~~l~~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~ 290 (512)
.++++++++.++.+|..+. ++|++|++++|.++.+ |..++.+++|++|+|++|.+..+|.. +.++++|++|++++|
T Consensus 11 ~~~l~~s~n~l~~ip~~~~--~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~N 88 (170)
T 3g39_A 11 GTTVDCSGKSLASVPTGIP--TTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQLSLNDN 88 (170)
T ss_dssp TTEEECTTSCCSSCCSCCC--TTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSS
T ss_pred CCEEEeCCCCcCccCccCC--CCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCEEECCCC
Confidence 4678888888888887663 7888899998888866 55688888899999988888888765 478888999999888
Q ss_pred ccCCCCCCCCCCCCCCCeeecCC
Q 010381 291 TLPAPPTNYSSSLKNLIFVSALH 313 (512)
Q Consensus 291 ~~~~~~p~~~~~l~~L~~l~l~~ 313 (512)
.+.+..+..+.++++|+.|++++
T Consensus 89 ~l~~~~~~~~~~l~~L~~L~L~~ 111 (170)
T 3g39_A 89 QLKSIPRGAFDNLKSLTHIWLLN 111 (170)
T ss_dssp CCCCCCTTTTTTCTTCCEEECCS
T ss_pred ccCEeCHHHhcCCCCCCEEEeCC
Confidence 88654444566666666666664
No 144
>4fdw_A Leucine rich hypothetical protein; putative cell surface protein, BIG3 domain, LRR domain, STRU genomics; 2.05A {Bacteroides ovatus} PDB: 4fd0_A
Probab=99.05 E-value=6.9e-09 Score=103.18 Aligned_cols=234 Identities=12% Similarity=0.134 Sum_probs=140.9
Q ss_pred CCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccccccc-hhhhccccCceee
Q 010381 210 FKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLN 286 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~ 286 (512)
+..++.+.+.. .++.++ ..|.++ +|+.+.+..+ ++.++.. +.+ .+|+.+.+.. .+..++ ..+.+|++|+.++
T Consensus 112 ~~~l~~i~ip~-~i~~I~~~aF~~~-~L~~i~l~~~-i~~I~~~aF~~-~~L~~i~lp~-~l~~I~~~aF~~c~~L~~l~ 186 (401)
T 4fdw_A 112 LKGYNEIILPN-SVKSIPKDAFRNS-QIAKVVLNEG-LKSIGDMAFFN-STVQEIVFPS-TLEQLKEDIFYYCYNLKKAD 186 (401)
T ss_dssp CSSCSEEECCT-TCCEECTTTTTTC-CCSEEECCTT-CCEECTTTTTT-CCCCEEECCT-TCCEECSSTTTTCTTCCEEE
T ss_pred cCCccEEEECC-ccCEehHhhcccC-CccEEEeCCC-ccEECHHhcCC-CCceEEEeCC-CccEehHHHhhCcccCCeee
Confidence 34555555543 233333 334443 5777776554 5544433 333 3577777765 444444 3356677777777
Q ss_pred cCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccC--CC
Q 010381 287 FGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNE--SK 364 (512)
Q Consensus 287 l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~--~~ 364 (512)
+..|.+. .++...-...+|+.+.+.. . ....-...+.++++|+.+++..+ .+
T Consensus 187 l~~n~l~-~I~~~aF~~~~L~~l~lp~----------------------~---l~~I~~~aF~~~~~L~~l~l~~~l~~I 240 (401)
T 4fdw_A 187 LSKTKIT-KLPASTFVYAGIEEVLLPV----------------------T---LKEIGSQAFLKTSQLKTIEIPENVSTI 240 (401)
T ss_dssp CTTSCCS-EECTTTTTTCCCSEEECCT----------------------T---CCEECTTTTTTCTTCCCEECCTTCCEE
T ss_pred cCCCcce-EechhhEeecccCEEEeCC----------------------c---hheehhhHhhCCCCCCEEecCCCccCc
Confidence 7666554 2332222234444444432 1 11111234556667777776552 11
Q ss_pred CCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccC----ceeeeeCCCCCccccEEEecCCCCc
Q 010381 365 PSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLG----RKLACVGSGGFPELKVLHLKSMYWL 440 (512)
Q Consensus 365 p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~----~~~~~~~~~~~~~L~~L~L~~~~~l 440 (512)
+. ....- .+|+.+.+.. .++......|.++++|+.+.+.++.... ...... +.++++|+.+.|.+ .+
T Consensus 241 ~~----~aF~~-~~L~~i~lp~-~i~~I~~~aF~~c~~L~~l~l~~~~~~~~~~~~I~~~a-F~~c~~L~~l~l~~--~i 311 (401)
T 4fdw_A 241 GQ----EAFRE-SGITTVKLPN-GVTNIASRAFYYCPELAEVTTYGSTFNDDPEAMIHPYC-LEGCPKLARFEIPE--SI 311 (401)
T ss_dssp CT----TTTTT-CCCSEEEEET-TCCEECTTTTTTCTTCCEEEEESSCCCCCTTCEECTTT-TTTCTTCCEECCCT--TC
T ss_pred cc----ccccc-CCccEEEeCC-CccEEChhHhhCCCCCCEEEeCCccccCCcccEECHHH-hhCCccCCeEEeCC--ce
Confidence 21 22222 6899999954 4455556789999999999999776531 122222 78899999999985 47
Q ss_pred ceee-eCCCCccccceeeecCCcccCCCC-cccCCCCCCcEEEccCCh
Q 010381 441 DEWT-MGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 441 ~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~~ 486 (512)
+.++ ..+.++++|+.+.+..+ ++.++ ..+.++ +|+.+++.++.
T Consensus 312 ~~I~~~aF~~c~~L~~l~lp~~--l~~I~~~aF~~~-~L~~l~l~~n~ 356 (401)
T 4fdw_A 312 RILGQGLLGGNRKVTQLTIPAN--VTQINFSAFNNT-GIKEVKVEGTT 356 (401)
T ss_dssp CEECTTTTTTCCSCCEEEECTT--CCEECTTSSSSS-CCCEEEECCSS
T ss_pred EEEhhhhhcCCCCccEEEECcc--ccEEcHHhCCCC-CCCEEEEcCCC
Confidence 7776 46778899999999764 55554 467888 99999999874
No 145
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=99.03 E-value=9.7e-11 Score=115.41 Aligned_cols=164 Identities=16% Similarity=0.079 Sum_probs=82.4
Q ss_pred CCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCC--ccCccccCccccCeeeecCCCCccc-Chhh-----
Q 010381 183 MYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCL-PSQL----- 253 (512)
Q Consensus 183 ~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~l-p~~~----- 253 (512)
++++.|.+.+|.+.......+ ..+....++|++|+|++|.++ ........+.+|++|+|++|.++.. ...+
T Consensus 72 ~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L~ 151 (372)
T 3un9_A 72 SSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLLL 151 (372)
T ss_dssp TTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHHH
T ss_pred hhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHHH
Confidence 456666666666543222233 333223356777777777665 1222223345667777777666521 1122
Q ss_pred hcCcCCcEEecCCccccc-----cchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCC
Q 010381 254 CTLLNLQTLQMPSSYIDQ-----SPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNI 328 (512)
Q Consensus 254 ~~l~~L~~L~L~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L 328 (512)
...++|++|+|++|.++. ++..+..+++|++|++++|.+..... ..+...+...++|
T Consensus 152 ~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~L~~L~Ls~N~l~~~g~------------------~~L~~~L~~~~~L 213 (372)
T 3un9_A 152 HDQCQITTLRLSNNPLTAAGVAVLMEGLAGNTSVTHLSLLHTGLGDEGL------------------ELLAAQLDRNRQL 213 (372)
T ss_dssp STTCCCCEEECCSSCCHHHHHHHHHHHHHTCSSCCEEECTTSSCHHHHH------------------HHHHHHGGGCSCC
T ss_pred hcCCccceeeCCCCCCChHHHHHHHHHHhcCCCcCEEeCCCCCCCcHHH------------------HHHHHHHhcCCCc
Confidence 134566777776665533 33344556666666666665431000 1223344455566
Q ss_pred CeEEEeccc--hhhhhhHHHhccCCCCCcEEEeccCCC
Q 010381 329 QTLRISGDL--SYYQSRVSKSLCKLQKLEWLKLVNESK 364 (512)
Q Consensus 329 ~~L~l~~~~--~~~~~~l~~~l~~l~~L~~L~l~~~~~ 364 (512)
++|++++|. ......++..+...++|+.|++++|.+
T Consensus 214 ~~L~Ls~N~i~~~g~~~l~~~L~~~~~L~~L~Ls~N~i 251 (372)
T 3un9_A 214 QELNVAYNGAGDTAALALARAAREHPSLELLHLYFNEL 251 (372)
T ss_dssp CEEECCSSCCCHHHHHHHHHHHHHCSSCCEEECTTSSC
T ss_pred CeEECCCCCCCHHHHHHHHHHHHhCCCCCEEeccCCCC
Confidence 666666653 112223444444555555555555544
No 146
>2r9u_A Variable lymphocyte receptor; adaptive immunity, VLR, leucine-rich repeat, LRR, system; 2.10A {Petromyzon marinus}
Probab=99.02 E-value=5.2e-10 Score=97.72 Aligned_cols=100 Identities=15% Similarity=0.178 Sum_probs=80.0
Q ss_pred eEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCcCCcEE
Q 010381 186 QSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTL 262 (512)
Q Consensus 186 r~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L 262 (512)
+.+.+.++... .+ ..+ .++|++|++++|.++.+ |..|..+++|++|+|++|.++.+|.. ++++++|++|
T Consensus 15 ~~l~~~~n~l~-----~iP~~~---~~~L~~L~Ls~N~l~~~~~~~~~~l~~L~~L~Ls~N~l~~i~~~~~~~l~~L~~L 86 (174)
T 2r9u_A 15 TLVNCQNIRLA-----SVPAGI---PTDKQRLWLNNNQITKLEPGVFDHLVNLQQLYFNSNKLTAIPTGVFDKLTQLTQL 86 (174)
T ss_dssp SEEECCSSCCS-----SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCCEEECCSSCCCCCCTTTTTTCTTCCEE
T ss_pred cEEEeCCCCCC-----ccCCCc---CCCCcEEEeCCCCccccCHHHhcCCcCCCEEECCCCCCCccChhHhCCcchhhEE
Confidence 56666666554 33 222 37888999999998865 56788899999999999999988776 4789999999
Q ss_pred ecCCccccccchh-hhccccCceeecCCcccC
Q 010381 263 QMPSSYIDQSPED-IWMMQKLMHLNFGSITLP 293 (512)
Q Consensus 263 ~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~ 293 (512)
+|++|.+..+|.. +..+++|++|++++|.+.
T Consensus 87 ~L~~N~l~~l~~~~~~~l~~L~~L~L~~N~~~ 118 (174)
T 2r9u_A 87 DLNDNHLKSIPRGAFDNLKSLTHIYLYNNPWD 118 (174)
T ss_dssp ECCSSCCCCCCTTTTTTCTTCSEEECCSSCBC
T ss_pred ECCCCccceeCHHHhccccCCCEEEeCCCCcc
Confidence 9999988888875 788999999999998875
No 147
>3g39_A Variable lymphocyte receptor VLRB.2D; antibody, X-RAY, crystallography, immune system; 1.55A {Petromyzon marinus} PDB: 3g3a_A 3g3b_A 3twi_D
Probab=98.99 E-value=7.6e-10 Score=96.29 Aligned_cols=102 Identities=17% Similarity=0.172 Sum_probs=79.7
Q ss_pred eeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCcc-CccccCccccCeeeecCCCCcccChh-hhcCcCCcE
Q 010381 185 LQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQF-PPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQT 261 (512)
Q Consensus 185 Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~l-p~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~ 261 (512)
.++++++++... .+ ..+ .+.|++|++++|.++.+ |..|..+++|++|++++|.++.+|.. +..+++|++
T Consensus 11 ~~~l~~s~n~l~-----~ip~~~---~~~l~~L~L~~N~i~~~~~~~~~~l~~L~~L~Ls~N~l~~l~~~~f~~l~~L~~ 82 (170)
T 3g39_A 11 GTTVDCSGKSLA-----SVPTGI---PTTTQVLYLYDNQITKLEPGVFDRLTQLTRLDLDNNQLTVLPAGVFDKLTQLTQ 82 (170)
T ss_dssp TTEEECTTSCCS-----SCCSCC---CTTCSEEECCSSCCCCCCTTTTTTCTTCSEEECCSSCCCCCCTTTTTTCTTCCE
T ss_pred CCEEEeCCCCcC-----ccCccC---CCCCcEEEcCCCcCCccChhhhcCcccCCEEECCCCCcCccChhhccCCCCCCE
Confidence 356666666654 23 222 37788899999998866 56788899999999999999977765 578899999
Q ss_pred EecCCccccccchh-hhccccCceeecCCcccCC
Q 010381 262 LQMPSSYIDQSPED-IWMMQKLMHLNFGSITLPA 294 (512)
Q Consensus 262 L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~~~ 294 (512)
|+|++|.+..+|.. +..+++|++|++++|.+..
T Consensus 83 L~L~~N~l~~~~~~~~~~l~~L~~L~L~~N~~~c 116 (170)
T 3g39_A 83 LSLNDNQLKSIPRGAFDNLKSLTHIWLLNNPWDC 116 (170)
T ss_dssp EECCSSCCCCCCTTTTTTCTTCCEEECCSSCBCT
T ss_pred EECCCCccCEeCHHHhcCCCCCCEEEeCCCCCCC
Confidence 99999988888764 7789999999999988753
No 148
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.84 E-value=5.7e-08 Score=96.65 Aligned_cols=281 Identities=12% Similarity=0.060 Sum_probs=154.2
Q ss_pred CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCC------------C-
Q 010381 181 SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIP------------S- 245 (512)
Q Consensus 181 ~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~------------~- 245 (512)
.|.+|+++.+..+ .. .+ ...|.+|.+|+.+++..+ ++.++ ..|..+..|+.+.+..+ .
T Consensus 69 ~c~~L~~i~lp~~-i~-----~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~l~~i~~~aF~~~~~ 141 (394)
T 4fs7_A 69 GCRKVTEIKIPST-VR-----EIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLMLKSIGVEAFKGCDF 141 (394)
T ss_dssp TCTTEEEEECCTT-CC-----EECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTTCCEECTTTTTTCCC
T ss_pred CCCCceEEEeCCC-cc-----CcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCceeeecceeeecccc
Confidence 6777777777533 22 34 333477778888777643 44333 34556666666554322 0
Q ss_pred --------Cccc-ChhhhcCcCCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC
Q 010381 246 --------LKCL-PSQLCTLLNLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI 315 (512)
Q Consensus 246 --------i~~l-p~~~~~l~~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~ 315 (512)
+..+ ...+.++.+|+.+.+..+ +..++ ..+..+.+|+.+++..+ +.......+.++..|+.+.+....
T Consensus 142 ~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~-~~~I~~~~F~~c~~L~~i~l~~~-~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 142 KEITIPEGVTVIGDEAFATCESLEYVSLPDS-METLHNGLFSGCGKLKSIKLPRN-LKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp SEEECCTTCCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCTTCCBCCCCTT-CCEECTTTTTTCTTCCBCCCCTTC
T ss_pred cccccCccccccchhhhcccCCCcEEecCCc-cceeccccccCCCCceEEEcCCC-ceEeCchhhccccccceeecCCCc
Confidence 1111 123556677777777554 23333 23556777777766554 221223445666666666655421
Q ss_pred ccCchhcCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCC
Q 010381 316 SCTPDILGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMP 395 (512)
Q Consensus 316 ~~~~~~l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~ 395 (512)
...........+|+.+.+... ....-...+..+..|+.+.+..+... +..-.+..+ ..++.+......+. ..
T Consensus 220 ~~i~~~~~~~~~l~~i~ip~~---~~~i~~~~f~~~~~l~~~~~~~~~~~-i~~~~F~~~-~~l~~~~~~~~~i~---~~ 291 (394)
T 4fs7_A 220 YYLGDFALSKTGVKNIIIPDS---FTELGKSVFYGCTDLESISIQNNKLR-IGGSLFYNC-SGLKKVIYGSVIVP---EK 291 (394)
T ss_dssp CEECTTTTTTCCCCEEEECTT---CCEECSSTTTTCSSCCEEEECCTTCE-ECSCTTTTC-TTCCEEEECSSEEC---TT
T ss_pred eEeehhhcccCCCceEEECCC---ceecccccccccccceeEEcCCCcce-eeccccccc-cccceeccCceeec---cc
Confidence 222233344556776666543 11111123456677777777653210 000034455 66666666554332 23
Q ss_pred CCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCC
Q 010381 396 TLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWC 473 (512)
Q Consensus 396 ~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~ 473 (512)
.+..+.+|+.+.+..+ +. .+.... +.++.+|+.++|.. .++.+. ..+.++.+|+.+.+..+ ++.++. .+.+
T Consensus 292 ~F~~~~~L~~i~l~~~-i~-~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~ 364 (394)
T 4fs7_A 292 TFYGCSSLTEVKLLDS-VK-FIGEEA-FESCTSLVSIDLPY--LVEEIGKRSFRGCTSLSNINFPLS--LRKIGANAFQG 364 (394)
T ss_dssp TTTTCTTCCEEEECTT-CC-EECTTT-TTTCTTCCEECCCT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTBTT
T ss_pred cccccccccccccccc-cc-eechhh-hcCCCCCCEEEeCC--cccEEhHHhccCCCCCCEEEECcc--ccEehHHHhhC
Confidence 4667778888887633 22 111222 56777888888864 366664 45667788888888654 454433 5677
Q ss_pred CCCCcEEEccCC
Q 010381 474 IQSLRKLDLHWP 485 (512)
Q Consensus 474 l~~L~~L~l~~~ 485 (512)
+++|+.+++..+
T Consensus 365 C~~L~~i~lp~~ 376 (394)
T 4fs7_A 365 CINLKKVELPKR 376 (394)
T ss_dssp CTTCCEEEEEGG
T ss_pred CCCCCEEEECCC
Confidence 888888888654
No 149
>3un9_A NLR family member X1; leucine rich repeat (LRR), antiviral signaling, MAVS, TRAF6, UQCRC2, immune system; 2.65A {Homo sapiens}
Probab=98.81 E-value=4.6e-10 Score=110.53 Aligned_cols=137 Identities=15% Similarity=0.121 Sum_probs=78.3
Q ss_pred CCeeEEEEecCCcCCc-----cCccccC-ccccCeeeecCCCCcc--cChhhhcCcCCcEEecCCccccccc-----hhh
Q 010381 210 FKYLRVLDLGSAVLDQ-----FPPGLEN-LFLLKYLKLNIPSLKC--LPSQLCTLLNLQTLQMPSSYIDQSP-----EDI 276 (512)
Q Consensus 210 ~~~L~~L~l~~~~l~~-----lp~~l~~-l~~L~~L~l~~~~i~~--lp~~~~~l~~L~~L~L~~~~~~~lp-----~~i 276 (512)
++.|+.|++++|.++. +...+.. ..+|++|+|++|.++. .......+.+|++|+|++|.++... ..+
T Consensus 71 ~~~L~~L~Ls~n~l~~~~~~~l~~~L~~~~~~L~~L~Ls~n~l~~~~~~~l~~~L~~L~~L~Ls~n~l~~~~~~~L~~~L 150 (372)
T 3un9_A 71 LSSLRQLNLAGVRMTPVKCTVVAAVLGSGRHALDEVNLASCQLDPAGLRTLLPVFLRARKLGLQLNSLGPEACKDLRDLL 150 (372)
T ss_dssp HTTCCEEECTTSCCCHHHHHHHHHHHSSCSSCEEEEECTTCCCCHHHHHHTHHHHHTEEEEECCSSCCCHHHHHHHHHHH
T ss_pred HhhCCEEEecCCCCCHHHHHHHHHHHhhCCCCceEEEecCCCCCHHHHHHHHHHHHhccHhhcCCCCCCHHHHHHHHHHH
Confidence 4567888888888762 2222222 2578888888887762 2222334667888888888765432 112
Q ss_pred -hccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccc--hhhhhhHHHhccCCCC
Q 010381 277 -WMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDL--SYYQSRVSKSLCKLQK 353 (512)
Q Consensus 277 -~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~--~~~~~~l~~~l~~l~~ 353 (512)
...++|++|++++|.+..... ..+...+..+++|++|++++|. ......++..+...++
T Consensus 151 ~~~~~~L~~L~Ls~n~l~~~~~------------------~~l~~~L~~~~~L~~L~Ls~N~l~~~g~~~L~~~L~~~~~ 212 (372)
T 3un9_A 151 LHDQCQITTLRLSNNPLTAAGV------------------AVLMEGLAGNTSVTHLSLLHTGLGDEGLELLAAQLDRNRQ 212 (372)
T ss_dssp HSTTCCCCEEECCSSCCHHHHH------------------HHHHHHHHTCSSCCEEECTTSSCHHHHHHHHHHHGGGCSC
T ss_pred HhcCCccceeeCCCCCCChHHH------------------HHHHHHHhcCCCcCEEeCCCCCCCcHHHHHHHHHHhcCCC
Confidence 235667777777776531000 2233444566667777777663 1122334555555566
Q ss_pred CcEEEeccCCC
Q 010381 354 LEWLKLVNESK 364 (512)
Q Consensus 354 L~~L~l~~~~~ 364 (512)
|+.|++++|.+
T Consensus 213 L~~L~Ls~N~i 223 (372)
T 3un9_A 213 LQELNVAYNGA 223 (372)
T ss_dssp CCEEECCSSCC
T ss_pred cCeEECCCCCC
Confidence 66666666554
No 150
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.74 E-value=3.1e-08 Score=96.68 Aligned_cols=76 Identities=21% Similarity=0.167 Sum_probs=37.3
Q ss_pred EecCC-cCCccCccccCccccCeeeecC-CCCcccC-hhhhcCcCCcEEecCCccccccch-hhhccccCceeecCCccc
Q 010381 217 DLGSA-VLDQFPPGLENLFLLKYLKLNI-PSLKCLP-SQLCTLLNLQTLQMPSSYIDQSPE-DIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 217 ~l~~~-~l~~lp~~l~~l~~L~~L~l~~-~~i~~lp-~~~~~l~~L~~L~L~~~~~~~lp~-~i~~l~~L~~L~l~~~~~ 292 (512)
+++++ .++.+|. +..+.+|++|+|++ |.++.+| ..++.+++|++|+|++|.+..+|+ .+.++++|++|+|++|.+
T Consensus 14 ~~~~~n~l~~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l 92 (347)
T 2ifg_A 14 RCTRDGALDSLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNAL 92 (347)
T ss_dssp ECCSSCCCTTTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCC
T ss_pred EcCCCCCCCccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCcc
Confidence 44444 4445555 55555555555553 5555444 234455555555555555444432 344555555555555554
Q ss_pred C
Q 010381 293 P 293 (512)
Q Consensus 293 ~ 293 (512)
.
T Consensus 93 ~ 93 (347)
T 2ifg_A 93 E 93 (347)
T ss_dssp S
T ss_pred c
Confidence 4
No 151
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Probab=98.67 E-value=4.3e-08 Score=95.71 Aligned_cols=91 Identities=14% Similarity=0.095 Sum_probs=68.9
Q ss_pred chhHHhcCCCeeEEEEecC-CcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccchhhhc
Q 010381 202 DCENFCKKFKYLRVLDLGS-AVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSPEDIWM 278 (512)
Q Consensus 202 ~~~~~~~~~~~L~~L~l~~-~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp~~i~~ 278 (512)
.++. +..+++|+.|+|++ |.++.+| ..|+.+++|++|+|++|.++.+|. .++++++|+.|+|++|.+..+|..+..
T Consensus 23 ~ip~-l~~~~~L~~L~l~~~n~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~~l~~L~~L~l~~N~l~~~~~~~~~ 101 (347)
T 2ifg_A 23 SLHH-LPGAENLTELYIENQQHLQHLELRDLRGLGELRNLTIVKSGLRFVAPDAFHFTPRLSRLNLSFNALESLSWKTVQ 101 (347)
T ss_dssp TTTT-SCSCSCCSEEECCSCSSCCEECGGGSCSCCCCSEEECCSSCCCEECTTGGGSCSCCCEEECCSSCCSCCCSTTTC
T ss_pred ccCC-CCCCCCeeEEEccCCCCCCCcChhHhccccCCCEEECCCCccceeCHHHhcCCcCCCEEeCCCCccceeCHHHcc
Confidence 3444 37788888888885 7888666 568888888888888888885544 568888888888888888888766554
Q ss_pred cccCceeecCCcccC
Q 010381 279 MQKLMHLNFGSITLP 293 (512)
Q Consensus 279 l~~L~~L~l~~~~~~ 293 (512)
...|+.|++.+|.+.
T Consensus 102 ~~~L~~l~l~~N~~~ 116 (347)
T 2ifg_A 102 GLSLQELVLSGNPLH 116 (347)
T ss_dssp SCCCCEEECCSSCCC
T ss_pred cCCceEEEeeCCCcc
Confidence 445888888888764
No 152
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.62 E-value=2e-06 Score=85.44 Aligned_cols=283 Identities=10% Similarity=0.075 Sum_probs=159.6
Q ss_pred CeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCc---CCccC-ccccCccccCeeeecCCCCcccCh-hhhcCc
Q 010381 184 YLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAV---LDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLL 257 (512)
Q Consensus 184 ~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~---l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~ 257 (512)
.|+++.+-..-. .+ +.-|.+|.+|+.+.+..+. ++.+. ..|..+.+|+.+.+..+ ++.++. .+..+.
T Consensus 65 ~L~sI~iP~svt------~Ig~~AF~~C~~L~~i~~~~n~p~~l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~ 137 (394)
T 4gt6_A 65 VLTSVQIPDTVT------EIGSNAFYNCTSLKRVTIQDNKPSCVKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCE 137 (394)
T ss_dssp CCCEEEECTTCC------EECTTTTTTCTTCCEEEEGGGCCCCCCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCT
T ss_pred cCEEEEECCCee------EEhHHHhhCCccCceEeecCCCCCeeeEechhhchhcccceeeccCCc-cceehhhhhhhhc
Confidence 477777754321 34 3334888888888887653 55443 45677777887776553 443333 456778
Q ss_pred CCcEEecCCccccccc-hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC-ccCchhcCCCCCCCeEEEec
Q 010381 258 NLQTLQMPSSYIDQSP-EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI-SCTPDILGRLPNIQTLRISG 335 (512)
Q Consensus 258 ~L~~L~L~~~~~~~lp-~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~-~~~~~~l~~l~~L~~L~l~~ 335 (512)
+|+.+.+... +..++ ..+..+.+|+.+.+..+-. .+....-....|+.+.+.... ......+..+.++.......
T Consensus 138 ~L~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~~~--~I~~~aF~~~~l~~i~ip~~~~~i~~~af~~c~~l~~~~~~~ 214 (394)
T 4gt6_A 138 ELDTVTIPEG-VTSVADGMFSYCYSLHTVTLPDSVT--AIEERAFTGTALTQIHIPAKVTRIGTNAFSECFALSTITSDS 214 (394)
T ss_dssp TCCEEECCTT-CCEECTTTTTTCTTCCEEECCTTCC--EECTTTTTTCCCSEEEECTTCCEECTTTTTTCTTCCEEEECC
T ss_pred ccccccccce-eeeecccceecccccccccccceee--EeccccccccceeEEEECCcccccccchhhhccccceecccc
Confidence 8888887654 33333 3356777788887754321 222222223556666665421 11223345556666555433
Q ss_pred cchhhhhhHHHh--------------ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCc
Q 010381 336 DLSYYQSRVSKS--------------LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLP 401 (512)
Q Consensus 336 ~~~~~~~~l~~~--------------l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~ 401 (512)
.. ....... ......+..+.+..+ +..+..-.+..+ ..|+.+.+..... ......+.+++
T Consensus 215 ~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~-v~~i~~~aF~~c-~~L~~i~lp~~~~-~I~~~aF~~c~ 288 (394)
T 4gt6_A 215 ES---YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG-VARIETHAFDSC-AYLASVKMPDSVV-SIGTGAFMNCP 288 (394)
T ss_dssp SS---SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT-EEEECTTTTTTC-SSCCEEECCTTCC-EECTTTTTTCT
T ss_pred cc---cccccceeecccccccccccccccccccceEEcCCc-ceEcccceeeec-ccccEEecccccc-eecCccccccc
Confidence 21 0000000 001112222222110 000000045567 7888888765432 23345677888
Q ss_pred ccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCCCCCCcE
Q 010381 402 YVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRK 479 (512)
Q Consensus 402 ~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~ 479 (512)
+|+.+.+. +.+. ...... +.++.+|+.+.|.. .++.+. ..+.+|.+|+.+.+... ++.++. .+.+|++|+.
T Consensus 289 ~L~~i~l~-~~i~-~I~~~a-F~~c~~L~~i~lp~--~v~~I~~~aF~~C~~L~~i~ip~s--v~~I~~~aF~~C~~L~~ 361 (394)
T 4gt6_A 289 ALQDIEFS-SRIT-ELPESV-FAGCISLKSIDIPE--GITQILDDAFAGCEQLERIAIPSS--VTKIPESAFSNCTALNN 361 (394)
T ss_dssp TCCEEECC-TTCC-EECTTT-TTTCTTCCEEECCT--TCCEECTTTTTTCTTCCEEEECTT--CCBCCGGGGTTCTTCCE
T ss_pred ccccccCC-Cccc-ccCcee-ecCCCCcCEEEeCC--cccEehHhHhhCCCCCCEEEECcc--cCEEhHhHhhCCCCCCE
Confidence 89988886 3332 222222 67888999999975 466665 45778899999999643 566644 6788999999
Q ss_pred EEccCChHHH
Q 010381 480 LDLHWPQTEL 489 (512)
Q Consensus 480 L~l~~~~~~~ 489 (512)
+++.++...+
T Consensus 362 i~~~~~~~~~ 371 (394)
T 4gt6_A 362 IEYSGSRSQW 371 (394)
T ss_dssp EEESSCHHHH
T ss_pred EEECCceeeh
Confidence 9999887443
No 153
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.50 E-value=1.2e-08 Score=99.65 Aligned_cols=138 Identities=19% Similarity=0.211 Sum_probs=71.4
Q ss_pred HHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCC--CCcccceeEEEcc--cccCce--
Q 010381 344 VSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLE--KLPYVQVLKLKQN--SYLGRK-- 417 (512)
Q Consensus 344 l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~--~l~~L~~L~l~~~--~~~~~~-- 417 (512)
+...+..+++|+.|+++++.-..+. .+ .+ ++|++|++..|.+.......+. .+|+|+.|+|+.+ ...+..
T Consensus 164 L~~ll~~~P~L~~L~L~g~~~l~l~--~~-~~-~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~~~~ 239 (362)
T 2ra8_A 164 LSPVLDAMPLLNNLKIKGTNNLSIG--KK-PR-PNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFDGDM 239 (362)
T ss_dssp CHHHHHTCTTCCEEEEECCBTCBCC--SC-BC-TTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCCSCG
T ss_pred HHHHHhcCCCCcEEEEeCCCCceec--cc-cC-CCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccchhH
Confidence 3444555666777766654211111 11 24 6777777776665433222232 5677777777531 111110
Q ss_pred ----eeeeCCCCCccccEEEecCCCCcceee---eCCCCccccceeeecCCcccC----CCCcccCCCCCCcEEEccCCh
Q 010381 418 ----LACVGSGGFPELKVLHLKSMYWLDEWT---MGAGAMPKLESLIVDPCAYLR----KLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 418 ----~~~~~~~~~~~L~~L~L~~~~~l~~l~---~~~~~l~~L~~L~l~~c~~l~----~lp~~~~~l~~L~~L~l~~~~ 486 (512)
.... ...+|+|++|.+.+|......+ .....+|+|++|+++.|.... .++..+.++++|+.|++++|.
T Consensus 240 ~~l~~~l~-~~~~p~Lr~L~L~~~~i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l~~L~~L~L~~n~ 318 (362)
T 2ra8_A 240 NVFRPLFS-KDRFPNLKWLGIVDAEEQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNY 318 (362)
T ss_dssp GGTGGGSC-TTTCTTCCEEEEESCTTHHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHHTTCSEEECCSBB
T ss_pred HHHHHHHh-cCCCCCcCEEeCCCCCCchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccCCcceEEECCCCc
Confidence 0111 2356777777777754332111 112356777777777665322 134444566777777777775
No 154
>4fs7_A Uncharacterized protein; leucine-rich repeats, protein binding, extracellular protein structural genomics; HET: MSE; 1.19A {Bacteroides ovatus}
Probab=98.45 E-value=4.6e-06 Score=82.74 Aligned_cols=262 Identities=9% Similarity=0.026 Sum_probs=149.3
Q ss_pred hHHhcCCCeeEEEEecCCcCCccC-ccccCccccCeeeecCCCCcccCh-hhhcCcCCcEEecCCccccccc--------
Q 010381 204 ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLLKYLKLNIPSLKCLPS-QLCTLLNLQTLQMPSSYIDQSP-------- 273 (512)
Q Consensus 204 ~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L~~L~l~~~~i~~lp~-~~~~l~~L~~L~L~~~~~~~lp-------- 273 (512)
..-|.++.+|+.+.+.. .++.+. .+|.+|.+|+.+++..+ ++.++. .+.++.+|+.+.+..+ +..+.
T Consensus 64 ~~AF~~c~~L~~i~lp~-~i~~I~~~aF~~c~~L~~i~lp~~-l~~I~~~aF~~c~~L~~i~~p~~-l~~i~~~aF~~~~ 140 (394)
T 4fs7_A 64 YAAFQGCRKVTEIKIPS-TVREIGEFAFENCSKLEIINIPDS-VKMIGRCTFSGCYALKSILLPLM-LKSIGVEAFKGCD 140 (394)
T ss_dssp TTTTTTCTTEEEEECCT-TCCEECTTTTTTCTTCCEECCCTT-CCEECTTTTTTCTTCCCCCCCTT-CCEECTTTTTTCC
T ss_pred HHHhhCCCCceEEEeCC-CccCcchhHhhCCCCCcEEEeCCC-ceEccchhhcccccchhhcccCc-eeeecceeeeccc
Confidence 33349999999999975 477654 56889999999999764 554443 4667788887766543 11111
Q ss_pred ---------------hhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCCccC-chhcCCCCCCCeEEEeccc
Q 010381 274 ---------------EDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPISCT-PDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 274 ---------------~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~-~~~l~~l~~L~~L~l~~~~ 337 (512)
..+.++.+|+.+.+..+.. ......+.++.+|+.+.+..++..+ ...+..+..|+.+.+....
T Consensus 141 ~~~~~~~~~~~~i~~~aF~~c~~L~~i~l~~~~~-~I~~~~F~~c~~L~~i~l~~~~~~I~~~~F~~~~~L~~i~~~~~~ 219 (394)
T 4fs7_A 141 FKEITIPEGVTVIGDEAFATCESLEYVSLPDSME-TLHNGLFSGCGKLKSIKLPRNLKIIRDYCFAECILLENMEFPNSL 219 (394)
T ss_dssp CSEEECCTTCCEECTTTTTTCTTCCEEECCTTCC-EECTTTTTTCTTCCBCCCCTTCCEECTTTTTTCTTCCBCCCCTTC
T ss_pred ccccccCccccccchhhhcccCCCcEEecCCccc-eeccccccCCCCceEEEcCCCceEeCchhhccccccceeecCCCc
Confidence 1234455555555543321 1112334455555555554321111 1223444445544433321
Q ss_pred hhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCce
Q 010381 338 SYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRK 417 (512)
Q Consensus 338 ~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~ 417 (512)
..+........+|+.+.+..... .+..-.+..+ ..++.+.+..+.. ......+..++.++.+......+..
T Consensus 220 ----~~i~~~~~~~~~l~~i~ip~~~~-~i~~~~f~~~-~~l~~~~~~~~~~-~i~~~~F~~~~~l~~~~~~~~~i~~-- 290 (394)
T 4fs7_A 220 ----YYLGDFALSKTGVKNIIIPDSFT-ELGKSVFYGC-TDLESISIQNNKL-RIGGSLFYNCSGLKKVIYGSVIVPE-- 290 (394)
T ss_dssp ----CEECTTTTTTCCCCEEEECTTCC-EECSSTTTTC-SSCCEEEECCTTC-EECSCTTTTCTTCCEEEECSSEECT--
T ss_pred ----eEeehhhcccCCCceEEECCCce-eccccccccc-ccceeEEcCCCcc-eeeccccccccccceeccCceeecc--
Confidence 00111122334566665543110 0000034456 7777777766532 2334456677777777766433222
Q ss_pred eeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCC-cccCCCCCCcEEEccCC
Q 010381 418 LACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLP-EELWCIQSLRKLDLHWP 485 (512)
Q Consensus 418 ~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp-~~~~~l~~L~~L~l~~~ 485 (512)
.. +.++.+|+.+.+.+ .++.+. ..+.++.+|+.+++... ++.++ ..+.++++|+.+.+..+
T Consensus 291 --~~-F~~~~~L~~i~l~~--~i~~I~~~aF~~c~~L~~i~lp~~--v~~I~~~aF~~c~~L~~i~lp~~ 353 (394)
T 4fs7_A 291 --KT-FYGCSSLTEVKLLD--SVKFIGEEAFESCTSLVSIDLPYL--VEEIGKRSFRGCTSLSNINFPLS 353 (394)
T ss_dssp --TT-TTTCTTCCEEEECT--TCCEECTTTTTTCTTCCEECCCTT--CCEECTTTTTTCTTCCEECCCTT
T ss_pred --cc-cccccccccccccc--ccceechhhhcCCCCCCEEEeCCc--ccEEhHHhccCCCCCCEEEECcc
Confidence 12 66788999999975 466675 45678899999999743 55554 36788999999998654
No 155
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.40 E-value=2.2e-07 Score=81.71 Aligned_cols=111 Identities=14% Similarity=0.110 Sum_probs=75.3
Q ss_pred CCCCeeEEEEecC-Ccchhhhcch-hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCcc-----
Q 010381 181 SDMYLQSFLNHSS-ESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLKC----- 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~~----- 248 (512)
..++|++|.+.++ .+....-..+ ..+ ...+.|++|+|++|.+. .+...+...+.|++|+|++|.|..
T Consensus 34 ~~~~L~~L~L~~n~~i~~~g~~~l~~~L-~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~~g~~~ 112 (185)
T 1io0_A 34 NDPDLEEVNLNNIMNIPVPTLKACAEAL-KTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISGSGILA 112 (185)
T ss_dssp TCTTCCEEECTTCTTCCHHHHHHHHHHH-TTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCHHHHHH
T ss_pred cCCCCCEEEecCCCCCCHHHHHHHHHHH-HhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCHHHHHH
Confidence 5677888888877 6654333344 444 67778888888888776 234455566778888888887772
Q ss_pred cChhhhcCcCCcEEec--CCccccc-----cchhhhccccCceeecCCccc
Q 010381 249 LPSQLCTLLNLQTLQM--PSSYIDQ-----SPEDIWMMQKLMHLNFGSITL 292 (512)
Q Consensus 249 lp~~~~~l~~L~~L~L--~~~~~~~-----lp~~i~~l~~L~~L~l~~~~~ 292 (512)
+...+...++|++|+| ++|.++. +...+...++|++|++++|.+
T Consensus 113 l~~~L~~n~~L~~L~L~~~~N~i~~~g~~~l~~~L~~n~~L~~L~L~~n~i 163 (185)
T 1io0_A 113 LVEALQSNTSLIELRIDNQSQPLGNNVEMEIANMLEKNTTLLKFGYHFTQQ 163 (185)
T ss_dssp HHHGGGGCSSCCEEECCCCSSCCCHHHHHHHHHHHHHCSSCCEEECCCSSH
T ss_pred HHHHHHhCCCceEEEecCCCCCCCHHHHHHHHHHHHhCCCcCEEeccCCCC
Confidence 4556666777888888 6676643 334556667788888877765
No 156
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain, leucine rich repeats, BFR43, structural genomics, PSI-2; 1.95A {Bacteroides fragilis}
Probab=98.40 E-value=2.9e-07 Score=89.83 Aligned_cols=140 Identities=20% Similarity=0.182 Sum_probs=70.3
Q ss_pred ccCccccCeeeecCCCCcccChhhhcCcCCcEEecCCcccccc-chhhh--ccccCceeecCCc--ccCCCCCCCCCCCC
Q 010381 230 LENLFLLKYLKLNIPSLKCLPSQLCTLLNLQTLQMPSSYIDQS-PEDIW--MMQKLMHLNFGSI--TLPAPPTNYSSSLK 304 (512)
Q Consensus 230 l~~l~~L~~L~l~~~~i~~lp~~~~~l~~L~~L~L~~~~~~~l-p~~i~--~l~~L~~L~l~~~--~~~~~~p~~~~~l~ 304 (512)
+..+++|+.|+++++.-..++. + .+++|++|++..|.+..- ...+. .+++|++|+|+.+ ...+. .++
T Consensus 168 l~~~P~L~~L~L~g~~~l~l~~-~-~~~~L~~L~L~~~~l~~~~l~~l~~~~lp~L~~L~L~~~~~~~~~~--~~~---- 239 (362)
T 2ra8_A 168 LDAMPLLNNLKIKGTNNLSIGK-K-PRPNLKSLEIISGGLPDSVVEDILGSDLPNLEKLVLYVGVEDYGFD--GDM---- 239 (362)
T ss_dssp HHTCTTCCEEEEECCBTCBCCS-C-BCTTCSEEEEECSBCCHHHHHHHHHSBCTTCCEEEEECBCGGGTCC--SCG----
T ss_pred HhcCCCCcEEEEeCCCCceecc-c-cCCCCcEEEEecCCCChHHHHHHHHccCCCCcEEEEeccccccccc--hhH----
Confidence 3445566666665542113332 2 256666666665544221 12232 5677777776432 11000 000
Q ss_pred CCCeeecCCCCccCchhc--CCCCCCCeEEEeccchhhhhhHHHhc---cCCCCCcEEEeccCCCCC--Cccc--CcCCC
Q 010381 305 NLIFVSALHPISCTPDIL--GRLPNIQTLRISGDLSYYQSRVSKSL---CKLQKLEWLKLVNESKPS--RMVL--SEYQF 375 (512)
Q Consensus 305 ~L~~l~l~~~~~~~~~~l--~~l~~L~~L~l~~~~~~~~~~l~~~l---~~l~~L~~L~l~~~~~p~--L~~l--~~~~l 375 (512)
..+...+ ..+++|+.|++.+|. .....+..+ ..+++|+.|+|+.|.+.. .+.+ .+..+
T Consensus 240 -----------~~l~~~l~~~~~p~Lr~L~L~~~~--i~~~~~~~la~a~~~~~L~~LdLs~n~L~d~G~~~L~~~L~~l 306 (362)
T 2ra8_A 240 -----------NVFRPLFSKDRFPNLKWLGIVDAE--EQNVVVEMFLESDILPQLETMDISAGVLTDEGARLLLDHVDKI 306 (362)
T ss_dssp -----------GGTGGGSCTTTCTTCCEEEEESCT--THHHHHHHHHHCSSGGGCSEEECCSSCCBHHHHHHHHTTHHHH
T ss_pred -----------HHHHHHHhcCCCCCcCEEeCCCCC--CchHHHHHHHhCccCCCCCEEECCCCCCChHHHHHHHhhcccC
Confidence 0000111 346778888887773 332222222 346788888887766531 0000 23456
Q ss_pred CCCccEEEEecccCCC
Q 010381 376 PPSLTHLSLSNTELKE 391 (512)
Q Consensus 376 p~~L~~L~L~~~~~~~ 391 (512)
++|+.|++++|.++.
T Consensus 307 -~~L~~L~L~~n~i~d 321 (362)
T 2ra8_A 307 -KHLKFINMKYNYLSD 321 (362)
T ss_dssp -TTCSEEECCSBBCCH
T ss_pred -CcceEEECCCCcCCH
Confidence 788888888887654
No 157
>4gt6_A Cell surface protein; leucine rich repeats, putative protein binding, extracellula protein, structural genomics; HET: MSE; 1.80A {Faecalibacterium prausnitzii a2-165}
Probab=98.40 E-value=6.1e-06 Score=81.85 Aligned_cols=305 Identities=10% Similarity=0.056 Sum_probs=180.2
Q ss_pred CceeEEEEEecCCccccCCC--CCCCeeEEEEecCCcchhhhcch-hHHhcCCCeeEEEEecCCcCCccC-ccccCcccc
Q 010381 161 ANVKRCFILKDLIDFFPSEY--SDMYLQSFLNHSSESDRLARIDC-ENFCKKFKYLRVLDLGSAVLDQFP-PGLENLFLL 236 (512)
Q Consensus 161 ~~~r~l~l~~~~~~~~~~~~--~~~~Lr~L~l~~~~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~~lp-~~l~~l~~L 236 (512)
..++.+.+. .....+.... .|.+|+++.+..+.... -..+ ...|..+..|+.+.+..+ ++.++ ..+..+.+|
T Consensus 64 ~~L~sI~iP-~svt~Ig~~AF~~C~~L~~i~~~~n~p~~--l~~Ig~~aF~~c~~L~~i~~~~~-~~~I~~~aF~~c~~L 139 (394)
T 4gt6_A 64 YVLTSVQIP-DTVTEIGSNAFYNCTSLKRVTIQDNKPSC--VKKIGRQAFMFCSELTDIPILDS-VTEIDSEAFHHCEEL 139 (394)
T ss_dssp SCCCEEEEC-TTCCEECTTTTTTCTTCCEEEEGGGCCCC--CCEECTTTTTTCTTCCBCGGGTT-CSEECTTTTTTCTTC
T ss_pred CcCEEEEEC-CCeeEEhHHHhhCCccCceEeecCCCCCe--eeEechhhchhcccceeeccCCc-cceehhhhhhhhccc
Confidence 347888887 5566655555 89999999997763221 1144 444488888888777654 44443 457888999
Q ss_pred CeeeecCCCCccc-ChhhhcCcCCcEEecCCccccccchhhhccccCceeecCCcccCCCCCCCCCCCCCCCeeecCCCC
Q 010381 237 KYLKLNIPSLKCL-PSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQKLMHLNFGSITLPAPPTNYSSSLKNLIFVSALHPI 315 (512)
Q Consensus 237 ~~L~l~~~~i~~l-p~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~~L~~L~l~~~~~~~~~p~~~~~l~~L~~l~l~~~~ 315 (512)
+.+.+..+ +..+ ...+..+.+|+.+.+..+ +..+........+|+.+.+..+.. ......+.++.++.........
T Consensus 140 ~~i~lp~~-~~~I~~~~F~~c~~L~~i~~~~~-~~~I~~~aF~~~~l~~i~ip~~~~-~i~~~af~~c~~l~~~~~~~~~ 216 (394)
T 4gt6_A 140 DTVTIPEG-VTSVADGMFSYCYSLHTVTLPDS-VTAIEERAFTGTALTQIHIPAKVT-RIGTNAFSECFALSTITSDSES 216 (394)
T ss_dssp CEEECCTT-CCEECTTTTTTCTTCCEEECCTT-CCEECTTTTTTCCCSEEEECTTCC-EECTTTTTTCTTCCEEEECCSS
T ss_pred ccccccce-eeeecccceecccccccccccce-eeEeccccccccceeEEEECCccc-ccccchhhhccccceecccccc
Confidence 99999754 3333 335678899999988765 445554444456788887754322 1233456666677665544210
Q ss_pred -ccCchh--------------cCCCCCCCeEEEeccchhhhhhHHHhccCCCCCcEEEeccCCCCCCcccCcCCCCCCcc
Q 010381 316 -SCTPDI--------------LGRLPNIQTLRISGDLSYYQSRVSKSLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLT 380 (512)
Q Consensus 316 -~~~~~~--------------l~~l~~L~~L~l~~~~~~~~~~l~~~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~ 380 (512)
...... ......+..+.+-.. ....-...+..+.+|+.+.+..+.. .+..-.+..+ +.|+
T Consensus 217 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ip~~---v~~i~~~aF~~c~~L~~i~lp~~~~-~I~~~aF~~c-~~L~ 291 (394)
T 4gt6_A 217 YPAIDNVLYEKSANGDYALIRYPSQREDPAFKIPNG---VARIETHAFDSCAYLASVKMPDSVV-SIGTGAFMNC-PALQ 291 (394)
T ss_dssp SCBSSSCEEEECTTSCEEEEECCTTCCCSEEECCTT---EEEECTTTTTTCSSCCEEECCTTCC-EECTTTTTTC-TTCC
T ss_pred cccccceeecccccccccccccccccccceEEcCCc---ceEcccceeeecccccEEecccccc-eecCcccccc-cccc
Confidence 000000 011122223322211 1111123567888999998865321 0000045677 8899
Q ss_pred EEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCCccccceeeec
Q 010381 381 HLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVD 459 (512)
Q Consensus 381 ~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~ 459 (512)
.+.+.. .+.......|.++.+|+.+.+..+ +. .+.... +.++.+|+.+.|.. .++.+. ..+.+|++|+.+++.
T Consensus 292 ~i~l~~-~i~~I~~~aF~~c~~L~~i~lp~~-v~-~I~~~a-F~~C~~L~~i~ip~--sv~~I~~~aF~~C~~L~~i~~~ 365 (394)
T 4gt6_A 292 DIEFSS-RITELPESVFAGCISLKSIDIPEG-IT-QILDDA-FAGCEQLERIAIPS--SVTKIPESAFSNCTALNNIEYS 365 (394)
T ss_dssp EEECCT-TCCEECTTTTTTCTTCCEEECCTT-CC-EECTTT-TTTCTTCCEEEECT--TCCBCCGGGGTTCTTCCEEEES
T ss_pred cccCCC-cccccCceeecCCCCcCEEEeCCc-cc-EehHhH-hhCCCCCCEEEECc--ccCEEhHhHhhCCCCCCEEEEC
Confidence 998864 334444567889999999999743 22 121222 78889999999965 466664 467889999999999
Q ss_pred CCcccCCCCcccCCCCCCcEEEccCCh
Q 010381 460 PCAYLRKLPEELWCIQSLRKLDLHWPQ 486 (512)
Q Consensus 460 ~c~~l~~lp~~~~~l~~L~~L~l~~~~ 486 (512)
++.... ..+..+.+|+.+.+..+.
T Consensus 366 ~~~~~~---~~~~~~~~L~~i~i~~~~ 389 (394)
T 4gt6_A 366 GSRSQW---NAISTDSGLQNLPVAPGS 389 (394)
T ss_dssp SCHHHH---HTCBCCCCC---------
T ss_pred Cceeeh---hhhhccCCCCEEEeCCCC
Confidence 865321 345677888888876554
No 158
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.36 E-value=1.3e-07 Score=81.36 Aligned_cols=88 Identities=10% Similarity=0.107 Sum_probs=56.6
Q ss_pred CCccEEEEecccCCCCCCCCCCCCcccceeEEEccc-ccCceeeeeCCCC----CccccEEEecCCCCccee-eeCCCCc
Q 010381 377 PSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNS-YLGRKLACVGSGG----FPELKVLHLKSMYWLDEW-TMGAGAM 450 (512)
Q Consensus 377 ~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~-~~~~~~~~~~~~~----~~~L~~L~L~~~~~l~~l-~~~~~~l 450 (512)
..|+.|++++|.++......+..+++|++|+|++|. +++..+... .. .++|+.|+|++|+.++.- -..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~L~~~~~L~~L~L~~C~~ItD~gL~~L--~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDHMEGLQYVEKIRLCKCHYIEDGCLERL--SQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGGGTTCSCCCEEEEESCTTCCHHHHHHH--HTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHHhcCCCCCCEEEeCCCCccCHHHHHHH--HhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 467888888877766666666777778888887775 444443332 22 246777777777766621 1224567
Q ss_pred cccceeeecCCcccCC
Q 010381 451 PKLESLIVDPCAYLRK 466 (512)
Q Consensus 451 ~~L~~L~l~~c~~l~~ 466 (512)
++|++|++++|+.++.
T Consensus 139 ~~L~~L~L~~c~~Itd 154 (176)
T 3e4g_A 139 RNLKYLFLSDLPGVKE 154 (176)
T ss_dssp TTCCEEEEESCTTCCC
T ss_pred CCCCEEECCCCCCCCc
Confidence 7777777777776654
No 159
>1io0_A Tropomodulin; LRR protein, right-handed super-helix, protein binding; 1.45A {Gallus gallus} SCOP: c.10.1.1
Probab=98.20 E-value=5.7e-07 Score=79.09 Aligned_cols=117 Identities=14% Similarity=0.093 Sum_probs=80.7
Q ss_pred hhHHhcCCCeeEEEEecCC-cCC-----ccCccccCccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccc
Q 010381 203 CENFCKKFKYLRVLDLGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQ 271 (512)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~ 271 (512)
+..+....+.|+.|+|++| .+. .+...+...++|++|+|++|.+. .+...+...++|++|+|++|.++.
T Consensus 28 l~~~l~~~~~L~~L~L~~n~~i~~~g~~~l~~~L~~~~~L~~L~Ls~n~i~~~g~~~l~~~L~~n~~L~~L~L~~N~i~~ 107 (185)
T 1io0_A 28 LKRIQNNDPDLEEVNLNNIMNIPVPTLKACAEALKTNTYVKKFSIVGTRSNDPVAFALAEMLKVNNTLKSLNVESNFISG 107 (185)
T ss_dssp HHHHHTTCTTCCEEECTTCTTCCHHHHHHHHHHHTTCCSCCEEECTTSCCCHHHHHHHHHHHHHCSSCCEEECCSSCCCH
T ss_pred HHHHHhcCCCCCEEEecCCCCCCHHHHHHHHHHHHhCCCcCEEECcCCCCChHHHHHHHHHHHhCCCcCEEECcCCcCCH
Confidence 4444488899999999998 776 34556677788999999998886 244556667788888888887754
Q ss_pred -----cchhhhccccCceeec--CCcccCCCCCCCCCCCCCCCeeecCCCCccCchhcCCCCCCCeEEEeccc
Q 010381 272 -----SPEDIWMMQKLMHLNF--GSITLPAPPTNYSSSLKNLIFVSALHPISCTPDILGRLPNIQTLRISGDL 337 (512)
Q Consensus 272 -----lp~~i~~l~~L~~L~l--~~~~~~~~~p~~~~~l~~L~~l~l~~~~~~~~~~l~~l~~L~~L~l~~~~ 337 (512)
+...+...++|++|++ ++|.+..... ..+...+...++|++|++++|.
T Consensus 108 ~g~~~l~~~L~~n~~L~~L~L~~~~N~i~~~g~------------------~~l~~~L~~n~~L~~L~L~~n~ 162 (185)
T 1io0_A 108 SGILALVEALQSNTSLIELRIDNQSQPLGNNVE------------------MEIANMLEKNTTLLKFGYHFTQ 162 (185)
T ss_dssp HHHHHHHHGGGGCSSCCEEECCCCSSCCCHHHH------------------HHHHHHHHHCSSCCEEECCCSS
T ss_pred HHHHHHHHHHHhCCCceEEEecCCCCCCCHHHH------------------HHHHHHHHhCCCcCEEeccCCC
Confidence 3455667778888888 6676532100 1233445566777788877774
No 160
>3e4g_A ATP synthase subunit S, mitochondrial; leucine-rich repeat, CF0, hydrogen ION transport, inner membrane, ION transport, membrane, mitochondrion; 0.96A {Bos taurus} PDB: 3e3z_A 3dze_A 3e2j_A
Probab=98.12 E-value=9.5e-07 Score=75.92 Aligned_cols=84 Identities=10% Similarity=0.096 Sum_probs=66.2
Q ss_pred cccceeEEEcccccCceeeeeCCCCCccccEEEecCCCCcceee-eCCCC----ccccceeeecCCcccCCC-CcccCCC
Q 010381 401 PYVQVLKLKQNSYLGRKLACVGSGGFPELKVLHLKSMYWLDEWT-MGAGA----MPKLESLIVDPCAYLRKL-PEELWCI 474 (512)
Q Consensus 401 ~~L~~L~l~~~~~~~~~~~~~~~~~~~~L~~L~L~~~~~l~~l~-~~~~~----l~~L~~L~l~~c~~l~~l-p~~~~~l 474 (512)
.+|+.|++++|.+++..+.. +.++++|+.|+|++|..++..- ..+.. +++|++|++++|+.++.- -..+..+
T Consensus 61 ~~L~~LDLs~~~Itd~GL~~--L~~~~~L~~L~L~~C~~ItD~gL~~L~~~~~~~~~L~~L~Ls~C~~ITD~Gl~~L~~~ 138 (176)
T 3e4g_A 61 YKIQAIDATDSCIMSIGFDH--MEGLQYVEKIRLCKCHYIEDGCLERLSQLENLQKSMLEMEIISCGNVTDKGIIALHHF 138 (176)
T ss_dssp CCEEEEEEESCCCCGGGGGG--GTTCSCCCEEEEESCTTCCHHHHHHHHTCHHHHHHCCEEEEESCTTCCHHHHHHGGGC
T ss_pred ceEeEEeCcCCCccHHHHHH--hcCCCCCCEEEeCCCCccCHHHHHHHHhcccccCCCCEEEcCCCCcCCHHHHHHHhcC
Confidence 46999999999988777665 5789999999999998887321 12233 468999999999877641 1235679
Q ss_pred CCCcEEEccCCh
Q 010381 475 QSLRKLDLHWPQ 486 (512)
Q Consensus 475 ~~L~~L~l~~~~ 486 (512)
++|++|++++|+
T Consensus 139 ~~L~~L~L~~c~ 150 (176)
T 3e4g_A 139 RNLKYLFLSDLP 150 (176)
T ss_dssp TTCCEEEEESCT
T ss_pred CCCCEEECCCCC
Confidence 999999999997
No 161
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=98.11 E-value=8.3e-05 Score=73.16 Aligned_cols=105 Identities=10% Similarity=0.047 Sum_probs=48.6
Q ss_pred ccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCCc
Q 010381 348 LCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGFP 427 (512)
Q Consensus 348 l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~~ 427 (512)
+..+.+|+.+.+..+ +..+..-.+..+ .+|+.+.+..+ +.......|.++++|+.+.+.++.+.... ... +.++.
T Consensus 236 f~~~~~L~~i~lp~~-v~~I~~~aF~~~-~~l~~i~l~~~-i~~i~~~aF~~c~~L~~i~l~~~~i~~I~-~~a-F~~c~ 310 (379)
T 4h09_A 236 FYGMKALDEIAIPKN-VTSIGSFLLQNC-TALKTLNFYAK-VKTVPYLLCSGCSNLTKVVMDNSAIETLE-PRV-FMDCV 310 (379)
T ss_dssp TTTCSSCCEEEECTT-CCEECTTTTTTC-TTCCEEEECCC-CSEECTTTTTTCTTCCEEEECCTTCCEEC-TTT-TTTCT
T ss_pred ccCCccceEEEcCCC-ccEeCcccccee-ehhcccccccc-ceeccccccccccccccccccccccceeh-hhh-hcCCC
Confidence 344555555555432 110000033445 55666665432 22223334556666666666544332211 111 45556
Q ss_pred cccEEEecCCCCcceee-eCCCCccccceeeec
Q 010381 428 ELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVD 459 (512)
Q Consensus 428 ~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~ 459 (512)
+|+.+.|.. .++.+. ..+.+|++|+.+.+.
T Consensus 311 ~L~~i~lp~--~l~~I~~~aF~~C~~L~~i~ip 341 (379)
T 4h09_A 311 KLSSVTLPT--ALKTIQVYAFKNCKALSTISYP 341 (379)
T ss_dssp TCCEEECCT--TCCEECTTTTTTCTTCCCCCCC
T ss_pred CCCEEEcCc--cccEEHHHHhhCCCCCCEEEEC
Confidence 666666643 344443 234555666666554
No 162
>4h09_A Hypothetical leucine rich repeat protein; two LRR_5 domains, PF13306 family, structural genomics, JOIN for structural genomics, JCSG; 2.50A {Eubacterium ventriosum}
Probab=97.90 E-value=0.00043 Score=67.97 Aligned_cols=129 Identities=9% Similarity=0.066 Sum_probs=85.6
Q ss_pred hccCCCCCcEEEeccCCCCCCcccCcCCCCCCccEEEEecccCCCCCCCCCCCCcccceeEEEcccccCceeeeeCCCCC
Q 010381 347 SLCKLQKLEWLKLVNESKPSRMVLSEYQFPPSLTHLSLSNTELKEDPMPTLEKLPYVQVLKLKQNSYLGRKLACVGSGGF 426 (512)
Q Consensus 347 ~l~~l~~L~~L~l~~~~~p~L~~l~~~~lp~~L~~L~L~~~~~~~~~~~~l~~l~~L~~L~l~~~~~~~~~~~~~~~~~~ 426 (512)
.+..+.+|+.+.+..+.. .+..-.+..+ ..|+.+.+..+ ++......+.++.+|+.+.+..+ +. ...... +.++
T Consensus 212 ~f~~~~~l~~i~~~~~~~-~i~~~~f~~~-~~L~~i~lp~~-v~~I~~~aF~~~~~l~~i~l~~~-i~-~i~~~a-F~~c 285 (379)
T 4h09_A 212 GFSYGKNLKKITITSGVT-TLGDGAFYGM-KALDEIAIPKN-VTSIGSFLLQNCTALKTLNFYAK-VK-TVPYLL-CSGC 285 (379)
T ss_dssp TTTTCSSCSEEECCTTCC-EECTTTTTTC-SSCCEEEECTT-CCEECTTTTTTCTTCCEEEECCC-CS-EECTTT-TTTC
T ss_pred ccccccccceeeecccee-EEccccccCC-ccceEEEcCCC-ccEeCccccceeehhcccccccc-ce-eccccc-cccc
Confidence 344566777777654211 0000045567 88999998765 33344556788899999998632 22 222222 6788
Q ss_pred ccccEEEecCCCCcceee-eCCCCccccceeeecCCcccCCCCc-ccCCCCCCcEEEccC
Q 010381 427 PELKVLHLKSMYWLDEWT-MGAGAMPKLESLIVDPCAYLRKLPE-ELWCIQSLRKLDLHW 484 (512)
Q Consensus 427 ~~L~~L~L~~~~~l~~l~-~~~~~l~~L~~L~l~~c~~l~~lp~-~~~~l~~L~~L~l~~ 484 (512)
++|+.+.+.+ ..++.++ ..+.++.+|+.+.+... ++.++. .+.++++|+.+.+..
T Consensus 286 ~~L~~i~l~~-~~i~~I~~~aF~~c~~L~~i~lp~~--l~~I~~~aF~~C~~L~~i~ip~ 342 (379)
T 4h09_A 286 SNLTKVVMDN-SAIETLEPRVFMDCVKLSSVTLPTA--LKTIQVYAFKNCKALSTISYPK 342 (379)
T ss_dssp TTCCEEEECC-TTCCEECTTTTTTCTTCCEEECCTT--CCEECTTTTTTCTTCCCCCCCT
T ss_pred cccccccccc-cccceehhhhhcCCCCCCEEEcCcc--ccEEHHHHhhCCCCCCEEEECC
Confidence 9999999987 4577775 45778999999999743 555544 578899999888854
No 163
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.79 E-value=1.9e-05 Score=73.08 Aligned_cols=78 Identities=21% Similarity=0.157 Sum_probs=47.1
Q ss_pred cCCCeeEEEEecCCcCCc---cCccccCccccCeeeecCCCCcccChhhhcCc--CCcEEecCCcccc-ccc-------h
Q 010381 208 KKFKYLRVLDLGSAVLDQ---FPPGLENLFLLKYLKLNIPSLKCLPSQLCTLL--NLQTLQMPSSYID-QSP-------E 274 (512)
Q Consensus 208 ~~~~~L~~L~l~~~~l~~---lp~~l~~l~~L~~L~l~~~~i~~lp~~~~~l~--~L~~L~L~~~~~~-~lp-------~ 274 (512)
.++++|+.|+|++|.++. +|..+..+++|++|+|++|.|+.+ ..+..+. +|++|+|++|.+. .+| .
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~~~~~y~~~ 245 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFRDQSTYISA 245 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCSSHHHHHHH
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccCcchhHHHH
Confidence 456677777777777663 334555677777777777776654 2344444 6777777777553 233 1
Q ss_pred hhhccccCceee
Q 010381 275 DIWMMQKLMHLN 286 (512)
Q Consensus 275 ~i~~l~~L~~L~ 286 (512)
.+..+++|+.||
T Consensus 246 il~~~P~L~~LD 257 (267)
T 3rw6_A 246 IRERFPKLLRLD 257 (267)
T ss_dssp HHHHCTTCCEES
T ss_pred HHHHCcccCeEC
Confidence 245666676664
No 164
>3rw6_A Nuclear RNA export factor 1; retroviral constitutive transport element (CTE), RNA recogni motif (RRM); HET: GTP CCC; 2.30A {Homo sapiens} PDB: 3rw7_A 1koo_A 1koh_A 1ft8_A 1fo1_A
Probab=97.75 E-value=2.4e-05 Score=72.37 Aligned_cols=66 Identities=21% Similarity=0.177 Sum_probs=49.3
Q ss_pred cCccccCeeeecCCCCcc---cChhhhcCcCCcEEecCCccccccchhhhccc--cCceeecCCcccCCCCC
Q 010381 231 ENLFLLKYLKLNIPSLKC---LPSQLCTLLNLQTLQMPSSYIDQSPEDIWMMQ--KLMHLNFGSITLPAPPT 297 (512)
Q Consensus 231 ~~l~~L~~L~l~~~~i~~---lp~~~~~l~~L~~L~L~~~~~~~lp~~i~~l~--~L~~L~l~~~~~~~~~p 297 (512)
.++++|+.|+|++|.++. +|..++.+++|+.|+|++|.+..+ ..+..+. +|++|++++|.+.+.+|
T Consensus 167 ~~l~~L~~L~Ls~N~l~~l~~l~~~~~~l~~L~~L~Ls~N~i~~~-~~l~~l~~l~L~~L~L~~Npl~~~~~ 237 (267)
T 3rw6_A 167 ENIPELLSLNLSNNRLYRLDDMSSIVQKAPNLKILNLSGNELKSE-RELDKIKGLKLEELWLDGNSLCDTFR 237 (267)
T ss_dssp HHCTTCCEEECTTSCCCCCGGGTTHHHHSTTCCEEECTTSCCCSG-GGGGGGTTSCCSEEECTTSTTGGGCS
T ss_pred hhCCCCCEEECCCCCCCCCccchhHHhhCCCCCEEECCCCccCCc-hhhhhcccCCcceEEccCCcCccccC
Confidence 457788888888888774 445667888888888888888766 3355555 88888888888765544
No 165
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.80 E-value=0.0012 Score=57.67 Aligned_cols=110 Identities=11% Similarity=0.040 Sum_probs=61.9
Q ss_pred CCCCeeEEEEecC-Ccchhhhcch-hHHhcCCCeeEEEEecCCcCC-----ccCccccCccccCeeeecCCCCc-----c
Q 010381 181 SDMYLQSFLNHSS-ESDRLARIDC-ENFCKKFKYLRVLDLGSAVLD-----QFPPGLENLFLLKYLKLNIPSLK-----C 248 (512)
Q Consensus 181 ~~~~Lr~L~l~~~-~~~~~~~~~~-~~~~~~~~~L~~L~l~~~~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~ 248 (512)
.-+.|+.|.+.++ .+....-..+ +.+ ..-..|+.|+|++|.+. .+-+.+..-..|++|+|++|.|. .
T Consensus 39 ~n~~L~~L~L~~nn~igd~ga~~la~aL-~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~~Ga~a 117 (197)
T 1pgv_A 39 DDTDLKEVNINNMKRVSKERIRSLIEAA-CNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTPELLAR 117 (197)
T ss_dssp TCSSCCEEECTTCCSSCHHHHHHHHHHH-TTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCHHHHHH
T ss_pred cCCCccEEECCCCCCCCHHHHHHHHHHH-hhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCHHHHHH
Confidence 3456667777654 4433222334 555 66677777777777765 33344555566777777777766 2
Q ss_pred cChhhhcCcCCcEEecCCc---ccc-----ccchhhhccccCceeecCCcc
Q 010381 249 LPSQLCTLLNLQTLQMPSS---YID-----QSPEDIWMMQKLMHLNFGSIT 291 (512)
Q Consensus 249 lp~~~~~l~~L~~L~L~~~---~~~-----~lp~~i~~l~~L~~L~l~~~~ 291 (512)
+-..+..-..|++|+|+++ .++ .+-..+..-+.|+.|+++.+.
T Consensus 118 la~aL~~N~tL~~L~L~n~~~~~ig~~g~~~ia~aL~~N~tL~~L~l~~~~ 168 (197)
T 1pgv_A 118 LLRSTLVTQSIVEFKADNQRQSVLGNQVEMDMMMAIEENESLLRVGISFAS 168 (197)
T ss_dssp HHHHTTTTCCCSEEECCCCSSCCCCHHHHHHHHHHHHHCSSCCEEECCCCC
T ss_pred HHHHHhhCCceeEEECCCCcCcCcCHHHHHHHHHHHHhCCCcCeEeccCCC
Confidence 3333444455777777654 222 122334555667777665543
No 166
>1pgv_A TMD-1, tropomodulin TMD-1; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics secsg; 1.80A {Caenorhabditis elegans} SCOP: c.10.1.1
Probab=96.28 E-value=0.0041 Score=54.25 Aligned_cols=88 Identities=10% Similarity=0.116 Sum_probs=52.9
Q ss_pred hhHHhcCCCeeEEEEecCC-cCC-----ccCccccCccccCeeeecCCCCc-----ccChhhhcCcCCcEEecCCccccc
Q 010381 203 CENFCKKFKYLRVLDLGSA-VLD-----QFPPGLENLFLLKYLKLNIPSLK-----CLPSQLCTLLNLQTLQMPSSYIDQ 271 (512)
Q Consensus 203 ~~~~~~~~~~L~~L~l~~~-~l~-----~lp~~l~~l~~L~~L~l~~~~i~-----~lp~~~~~l~~L~~L~L~~~~~~~ 271 (512)
+..+..+-+.|+.|+|+++ .+. .+-+.+..-..|+.|+|++|.|. .+...+..-+.|++|+|++|.|+.
T Consensus 33 l~~ll~~n~~L~~L~L~~nn~igd~ga~~la~aL~~N~~L~~L~L~~n~igd~ga~alA~aL~~N~tL~~L~L~~N~Ig~ 112 (197)
T 1pgv_A 33 INRLREDDTDLKEVNINNMKRVSKERIRSLIEAACNSKHIEKFSLANTAISDSEARGLIELIETSPSLRVLNVESNFLTP 112 (197)
T ss_dssp HHHHHTTCSSCCEEECTTCCSSCHHHHHHHHHHHTTCSCCCEEECTTSCCBHHHHTTHHHHHHHCSSCCEEECCSSBCCH
T ss_pred HHHHHhcCCCccEEECCCCCCCCHHHHHHHHHHHhhCCCcCEEEccCCCCChHHHHHHHHHHhcCCccCeEecCCCcCCH
Confidence 3444466778888888875 555 34455666667788888777776 233334455667777777776643
Q ss_pred -----cchhhhccccCceeecCCc
Q 010381 272 -----SPEDIWMMQKLMHLNFGSI 290 (512)
Q Consensus 272 -----lp~~i~~l~~L~~L~l~~~ 290 (512)
+-..+..-+.|++|+++++
T Consensus 113 ~Ga~ala~aL~~N~tL~~L~L~n~ 136 (197)
T 1pgv_A 113 ELLARLLRSTLVTQSIVEFKADNQ 136 (197)
T ss_dssp HHHHHHHHHTTTTCCCSEEECCCC
T ss_pred HHHHHHHHHHhhCCceeEEECCCC
Confidence 2233444455666666543
No 167
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.37 E-value=0.021 Score=46.27 Aligned_cols=53 Identities=25% Similarity=0.281 Sum_probs=35.1
Q ss_pred EEEecCCcCC--ccCccccCccccCeeeecCCCCcccChh-hhcCcCCcEEecCCccc
Q 010381 215 VLDLGSAVLD--QFPPGLENLFLLKYLKLNIPSLKCLPSQ-LCTLLNLQTLQMPSSYI 269 (512)
Q Consensus 215 ~L~l~~~~l~--~lp~~l~~l~~L~~L~l~~~~i~~lp~~-~~~l~~L~~L~L~~~~~ 269 (512)
+++.++..++ .+|..+. .+|++|+|++|.|+.+|.. +..+++|++|+|.+|.+
T Consensus 12 ~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 12 LVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp EEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred EEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 5667777776 7775432 3577777777777766654 45677777777777633
No 168
>3rfe_A Platelet glycoprotein IB beta chain; platelet surface receptor, GPIX, cell adhesion; HET: NAG; 1.25A {Homo sapiens} PDB: 3rez_A*
Probab=95.11 E-value=0.035 Score=44.92 Aligned_cols=54 Identities=13% Similarity=0.233 Sum_probs=39.9
Q ss_pred CeeeecCCCCc--ccChhhhcCcCCcEEecCCccccccchh-hhccccCceeecCCccc
Q 010381 237 KYLKLNIPSLK--CLPSQLCTLLNLQTLQMPSSYIDQSPED-IWMMQKLMHLNFGSITL 292 (512)
Q Consensus 237 ~~L~l~~~~i~--~lp~~~~~l~~L~~L~L~~~~~~~lp~~-i~~l~~L~~L~l~~~~~ 292 (512)
..++-+++.++ .+|..+. .+|++|+|++|.++.+|.. +..+++|+.|+|++|..
T Consensus 11 ~~v~Cs~~~L~~~~vP~~lp--~~l~~L~Ls~N~l~~l~~~~f~~l~~L~~L~L~~NP~ 67 (130)
T 3rfe_A 11 TLVDCGRRGLTWASLPTAFP--VDTTELVLTGNNLTALPPGLLDALPALRTAHLGANPW 67 (130)
T ss_dssp TEEECCSSCCCTTTSCSCCC--TTCSEEECTTSCCSSCCTTTGGGCTTCCEEECCSSCC
T ss_pred CEEEeCCCCCccccCCCCCC--cCCCEEECCCCcCCccChhhhhhccccCEEEecCCCe
Confidence 35667777777 7775543 4688888888888888755 56788888888888765
No 169
>2fna_A Conserved hypothetical protein; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: MSE ADP; 2.00A {Sulfolobus solfataricus} SCOP: a.4.5.11 c.37.1.20
Probab=51.28 E-value=16 Score=34.19 Aligned_cols=113 Identities=11% Similarity=-0.089 Sum_probs=64.9
Q ss_pred CCCCCchhHHHHhhhccc-CCCHHHHHH-HHHHcCCCCCccccCCCCHHHHHhhhcccC--CCCcchhhHhhhhcccCCC
Q 010381 2 ENGEKIRLDSVLIGGPLI-RLKHEAWQF-FILHYGSMPLENYLQGETIPTILSRICSVL--ELPFHLKICCIYLCVFPPS 77 (512)
Q Consensus 2 ~~c~GlPLai~~~g~~L~-~~~~~~W~~-~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~--~L~~~~k~cfl~~a~fp~~ 77 (512)
+.|+|.|+++..++..+. +.+...|-. +.+... ..+...+.+ +.|+ .|++..+..+..+|+ |
T Consensus 237 ~~t~G~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~-~~~~~~~l~~~~~~~l~~la~---g 302 (357)
T 2fna_A 237 EKIGGIPGWLTYFGFIYLDNKNLDFAINQTLEYAK----------KLILKEFEN-FLHGREIARKRYLNIMRTLSK---C 302 (357)
T ss_dssp HHHCSCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHH-HHTTCGGGHHHHHHHHHHHTT---C
T ss_pred HHhCCCHHHHHHHHHHHccccchHHHHHHHHHHHH----------HHHHHHHHH-HhhccccccHHHHHHHHHHHc---C
Confidence 468999999999998876 444444422 111100 011111210 2221 577889999999998 3
Q ss_pred ceeCHHHHHHHHH-HcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEE-cCHHHHHH
Q 010381 78 IEISTRQLYQLWE-AEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCY-FPSIVDTS 139 (512)
Q Consensus 78 ~~i~~~~Li~~w~-~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~-mhdli~~~ 139 (512)
. +...+..... ..|. .-.......+++.|++.++|.... + .++ .|.++++.
T Consensus 303 ~--~~~~l~~~~~~~~g~--~~~~~~~~~~L~~L~~~gli~~~~----~---~y~f~~~~~~~~ 355 (357)
T 2fna_A 303 G--KWSDVKRALELEEGI--EISDSEIYNYLTQLTKHSWIIKEG----E---KYCPSEPLISLA 355 (357)
T ss_dssp B--CHHHHHHHHHHHHCS--CCCHHHHHHHHHHHHHTTSEEESS----S---CEEESSHHHHHH
T ss_pred C--CHHHHHHHHHHhcCC--CCCHHHHHHHHHHHHhCCCEEecC----C---EEEecCHHHHHh
Confidence 2 4555554321 2241 012345678999999999997653 1 255 46777654
No 170
>2qen_A Walker-type ATPase; unknown function; HET: ADP; 2.25A {Pyrococcus abyssi}
Probab=48.41 E-value=30 Score=32.22 Aligned_cols=112 Identities=12% Similarity=-0.059 Sum_probs=62.4
Q ss_pred CCCCCchhHHHHhhhccc-CCCHHHHH-HHHHHcCCCCCccccCCCCHHHHHhhhcccCCCCcchhhHhhhhcccCCCce
Q 010381 2 ENGEKIRLDSVLIGGPLI-RLKHEAWQ-FFILHYGSMPLENYLQGETIPTILSRICSVLELPFHLKICCIYLCVFPPSIE 79 (512)
Q Consensus 2 ~~c~GlPLai~~~g~~L~-~~~~~~W~-~~l~~l~~~~~~~~~~~~~i~~~L~~~lsY~~L~~~~k~cfl~~a~fp~~~~ 79 (512)
+.|+|.|+++..++..+. ..+...|- .+.+... ..+...+.+ +.+ . ++..+..+..+|. + .
T Consensus 233 ~~tgG~P~~l~~~~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~l~~-l~~-~-~~~~~~~l~~la~---g-~ 295 (350)
T 2qen_A 233 ELLDGIPGWLVVFGVEYLRNGDFGRAMKRTLEVAK----------GLIMGELEE-LRR-R-SPRYVDILRAIAL---G-Y 295 (350)
T ss_dssp HHHTTCHHHHHHHHHHHHHHCCHHHHHHHHHHHHH----------HHHHHHHHH-HHH-H-CHHHHHHHHHHHT---T-C
T ss_pred HHhCCCHHHHHHHHHHHhccccHhHHHHHHHHHHH----------HHHHHHHHH-HHh-C-ChhHHHHHHHHHh---C-C
Confidence 358999999999987654 33332221 1111100 111111220 222 2 6778899998887 3 2
Q ss_pred eCHHHHHHHHHHcCCCCCChHHHHHHHHHHHHhcCceeeeecCCCCceeEEEc-CHHHHHH
Q 010381 80 ISTRQLYQLWEAEGFIPYNSEETAEHHLKELIRRGFIQVSKRRAGGTIKSCYF-PSIVDTS 139 (512)
Q Consensus 80 i~~~~Li~~w~~~g~~~~~~~~~~~~~~~~L~~~~li~~~~~~~~~~~~~~~m-hdli~~~ 139 (512)
++...+.....+..- . ........+++.|.+.++|.... ..+++ |.++++.
T Consensus 296 ~~~~~l~~~~~~~~~-~-~~~~~~~~~l~~L~~~gli~~~~-------~~y~~~~p~~~~~ 347 (350)
T 2qen_A 296 NRWSLIRDYLAVKGT-K-IPEPRLYALLENLKKMNWIVEED-------NTYKIADPVVATV 347 (350)
T ss_dssp CSHHHHHHHHHHTTC-C-CCHHHHHHHHHHHHHTTSEEEET-------TEEEESSHHHHHH
T ss_pred CCHHHHHHHHHHHhC-C-CCHHHHHHHHHHHHhCCCEEecC-------CEEEEecHHHHHH
Confidence 455666655433210 1 12445678999999999998752 23555 5566554
No 171
>2vda_B Maltoporin; sugar transport, protein transport, protein targeting, transmembrane, outer membrane, signal peptide; NMR {Escherichia coli}
Probab=42.85 E-value=19 Score=18.93 Aligned_cols=18 Identities=17% Similarity=0.294 Sum_probs=15.1
Q ss_pred CCCCCchhHHHHhhhccc
Q 010381 2 ENGEKIRLDSVLIGGPLI 19 (512)
Q Consensus 2 ~~c~GlPLai~~~g~~L~ 19 (512)
+|-..+|||..|.++.+.
T Consensus 6 rkrrklplavav~agv~~ 23 (28)
T 2vda_B 6 RKRRKLPLAVAVAAGVMS 23 (28)
T ss_dssp CCCCCCTHHHHHHHHTTC
T ss_pred eccccCchHHHHHHHHhH
Confidence 455679999999999887
No 172
>1w5s_A Origin recognition complex subunit 2 ORC2; replication, CDC6, DNA replication initiation, DNA BIND protein, AAA+ ATPase; HET: ADP; 2.4A {Aeropyrum pernix} SCOP: a.4.5.11 c.37.1.20 PDB: 1w5t_A*
Probab=30.39 E-value=1.4e+02 Score=28.27 Aligned_cols=69 Identities=17% Similarity=0.087 Sum_probs=45.0
Q ss_pred HHHhhhcccCCCCcchhhHhhhhcccC--CCceeCHHHHHHHHH--H---cCCCCCChHHHHHHHHHHHHhcCceeeee
Q 010381 49 TILSRICSVLELPFHLKICCIYLCVFP--PSIEISTRQLYQLWE--A---EGFIPYNSEETAEHHLKELIRRGFIQVSK 120 (512)
Q Consensus 49 ~~L~~~lsY~~L~~~~k~cfl~~a~fp--~~~~i~~~~Li~~w~--~---~g~~~~~~~~~~~~~~~~L~~~~li~~~~ 120 (512)
..+. -++..||.+.+.++..+|.+. .+..++..++...+. + .|.- .-.......+++.|++.++|....
T Consensus 297 ~~~~--~~l~~l~~~~~~~l~aia~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~l~~L~~~gli~~~~ 372 (412)
T 1w5s_A 297 SIQT--HELEALSIHELIILRLIAEATLGGMEWINAGLLRQRYEDASLTMYNVK-PRGYTQYHIYLKHLTSLGLVDAKP 372 (412)
T ss_dssp ---C--CSSSSSCHHHHHHHHHHHHHHHTTCSSBCHHHHHHHHHHHHHHHSCCC-CCCHHHHHHHHHHHHHTTSEEEEC
T ss_pred chHH--HHHHcCCHHHHHHHHHHHHHHhcCCCCccHHHHHHHHHHHHHhhcCCC-CCCHHHHHHHHHHHHhCCCEEeec
Confidence 3455 677899999999999888764 334566666655442 2 2321 122345668899999999998764
Done!