BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= 010382
         (512 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|2HBW|A Chain A, Crystal Structure Of A Putative Endopeptidase (ava_3396)
           From Anabaena Variabilis Atcc 29413 At 1.05 A Resolution
          Length = 235

 Score = 29.6 bits (65), Expect = 4.2,   Method: Compositional matrix adjust.
 Identities = 34/128 (26%), Positives = 48/128 (37%), Gaps = 28/128 (21%)

Query: 75  NLEGDLQSGAIAGYSLLWLL-----------LWATAVGLLVQLLSARLGVATGRHLAELC 123
           NLE  +QS     Y  L  L               AVG  +Q+ S + G A       LC
Sbjct: 5   NLESSIQSPKSGEYQCLAALNLYDSPECTSLATQAAVGRHLQVTSNQQGAAV---EVCLC 61

Query: 124 REEYPSWARM----------VLWVMAELALIGSDIQEVIGSAIAI--KILSNGILPLWSG 171
            ++YP W  +          VL+     +   S+I++++  AIA   K        LW G
Sbjct: 62  EDDYPGWLSLGDLGLLKPATVLYQAKSFSE--SEIKKLLPGAIAFTQKAXQQSNYYLWGG 119

Query: 172 VVITALDC 179
            V    DC
Sbjct: 120 TVGPNYDC 127


>pdb|1PRH|A Chain A, The X-Ray Crystal Structure Of The Membrane Protein
           Prostaglandin H2 Synthase-1
 pdb|1PRH|B Chain B, The X-Ray Crystal Structure Of The Membrane Protein
           Prostaglandin H2 Synthase-1
          Length = 554

 Score = 28.9 bits (63), Expect = 6.5,   Method: Compositional matrix adjust.
 Identities = 15/47 (31%), Positives = 27/47 (57%)

Query: 106 LLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVI 152
           +L A + +   + + +L + E+P+W    L+  A+L LIG  I+ VI
Sbjct: 267 MLYATIWLREHQRVCDLLKAEHPTWGDEQLFQTAKLILIGETIKIVI 313


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.325    0.141    0.427 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,392,948
Number of Sequences: 62578
Number of extensions: 552566
Number of successful extensions: 1394
Number of sequences better than 100.0: 12
Number of HSP's better than 100.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1383
Number of HSP's gapped (non-prelim): 12
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 54 (25.4 bits)