Query 010382
Match_columns 512
No_of_seqs 199 out of 1344
Neff 6.6
Searched_HMMs 46136
Date Thu Mar 28 23:52:54 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010382.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010382hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG1291 Mn2+ and Fe2+ transpor 100.0 2E-114 5E-119 891.0 23.5 445 47-498 19-481 (503)
2 PRK00701 manganese transport p 100.0 4.3E-84 9.3E-89 689.2 48.5 407 49-465 26-437 (439)
3 TIGR01197 nramp NRAMP (natural 100.0 9.9E-80 2.2E-84 645.5 42.3 372 54-432 1-390 (390)
4 COG1914 MntH Mn2+ and Fe2+ tra 100.0 2.2E-78 4.8E-83 635.5 47.0 405 48-466 8-414 (416)
5 PF01566 Nramp: Natural resist 100.0 1.1E-67 2.5E-72 551.1 36.8 356 76-439 1-358 (358)
6 PF00474 SSF: Sodium:solute sy 98.8 2.1E-06 4.5E-11 91.2 27.6 114 66-181 17-133 (406)
7 TIGR00813 sss transporter, SSS 98.8 1.9E-05 4.1E-10 84.2 33.5 119 63-186 11-134 (407)
8 TIGR02119 panF sodium/pantothe 98.8 0.00027 5.9E-09 76.8 41.2 128 65-197 50-187 (471)
9 PF03222 Trp_Tyr_perm: Tryptop 98.8 8.3E-05 1.8E-09 79.2 36.1 159 59-220 5-169 (394)
10 PRK09442 panF sodium/panthothe 98.7 0.00067 1.5E-08 74.1 42.2 115 67-186 53-176 (483)
11 PRK15419 proline:sodium sympor 98.7 0.00067 1.5E-08 74.5 42.0 120 64-186 49-178 (502)
12 TIGR02121 Na_Pro_sym sodium/pr 98.6 0.00024 5.3E-09 77.7 33.8 118 66-186 47-174 (487)
13 PRK15132 tyrosine transporter 98.6 0.00045 9.7E-09 73.9 34.5 159 58-220 4-169 (403)
14 PRK13629 threonine/serine tran 98.5 0.00077 1.7E-08 72.5 35.5 151 65-220 27-187 (443)
15 TIGR02711 symport_actP cation/ 98.4 0.0019 4E-08 71.9 36.4 121 63-186 75-198 (549)
16 COG1457 CodB Purine-cytosine p 98.4 0.0024 5.2E-08 68.7 34.6 119 90-213 54-172 (442)
17 PRK12488 acetate permease; Pro 98.4 0.0022 4.9E-08 71.2 35.8 121 63-186 75-198 (549)
18 PRK11375 allantoin permease; P 98.4 0.0054 1.2E-07 67.2 38.1 45 89-133 61-105 (484)
19 PRK09395 actP acetate permease 98.3 0.0046 1E-07 68.8 36.6 121 63-186 77-200 (551)
20 PRK09664 tryptophan permease T 98.3 0.0026 5.7E-08 68.1 32.6 156 58-218 10-173 (415)
21 TIGR00814 stp serine transport 98.2 0.003 6.6E-08 67.4 29.8 125 91-219 33-170 (397)
22 COG0591 PutP Na+/proline sympo 98.1 0.027 5.8E-07 61.9 37.4 128 71-200 54-188 (493)
23 PRK10483 tryptophan permease; 98.1 0.013 2.9E-07 62.8 32.4 155 58-217 12-173 (414)
24 PRK10249 phenylalanine transpo 98.1 0.029 6.4E-07 60.8 39.4 115 50-171 22-138 (458)
25 TIGR03648 Na_symport_lg probab 98.1 0.036 7.8E-07 61.7 41.0 119 63-186 40-163 (552)
26 TIGR00837 araaP aromatic amino 98.0 0.01 2.2E-07 62.5 29.7 72 319-393 255-326 (381)
27 PF01235 Na_Ala_symp: Sodium:a 98.0 0.0064 1.4E-07 65.1 27.5 280 68-365 30-338 (416)
28 PRK11049 D-alanine/D-serine/gl 97.9 0.065 1.4E-06 58.3 40.1 62 70-135 41-102 (469)
29 TIGR02358 thia_cytX probable h 97.9 0.039 8.5E-07 58.7 31.5 47 88-134 29-75 (386)
30 PRK11387 S-methylmethionine tr 97.9 0.068 1.5E-06 58.2 40.5 79 51-134 16-96 (471)
31 TIGR00800 ncs1 NCS1 nucleoside 97.8 0.055 1.2E-06 58.5 32.5 47 88-134 47-93 (442)
32 PRK10238 aromatic amino acid t 97.8 0.096 2.1E-06 56.8 40.8 146 48-199 11-157 (456)
33 PRK11017 codB cytosine permeas 97.8 0.092 2E-06 56.2 39.7 116 89-210 43-159 (404)
34 COG0733 Na+-dependent transpor 97.6 0.17 3.7E-06 54.4 34.4 145 187-352 160-322 (439)
35 COG3949 Uncharacterized membra 97.6 0.057 1.2E-06 55.8 25.5 119 84-206 32-151 (349)
36 PRK10484 putative transporter; 97.5 0.24 5.3E-06 54.7 40.3 72 63-134 46-118 (523)
37 PF02133 Transp_cyt_pur: Perme 97.5 0.0086 1.9E-07 64.4 19.8 46 89-134 43-88 (440)
38 TIGR00796 livcs branched-chain 97.4 0.26 5.7E-06 52.4 33.6 68 67-136 5-73 (378)
39 COG0814 SdaC Amino acid permea 97.3 0.34 7.3E-06 52.2 33.6 147 64-220 16-177 (415)
40 PRK15049 L-asparagine permease 97.3 0.4 8.7E-06 52.7 44.2 80 50-134 29-109 (499)
41 COG1113 AnsP Gamma-aminobutyra 97.3 0.41 8.9E-06 51.7 35.6 125 71-199 29-158 (462)
42 TIGR00835 agcS amino acid carr 97.3 0.41 9E-06 51.6 31.8 46 320-368 323-368 (425)
43 TIGR00930 2a30 K-Cl cotranspor 97.2 0.93 2E-05 53.9 39.7 28 334-361 386-413 (953)
44 COG4145 PanF Na+/panthothenate 97.1 0.5 1.1E-05 49.7 32.6 118 63-188 47-176 (473)
45 TIGR00907 2A0304 amino acid pe 97.1 0.64 1.4E-05 50.6 31.2 38 95-134 58-99 (482)
46 TIGR00910 2A0307_GadC glutamat 97.0 0.75 1.6E-05 50.8 38.8 50 84-134 29-83 (507)
47 TIGR00911 2A0308 L-type amino 96.7 1.3 2.9E-05 48.5 38.2 37 96-134 89-125 (501)
48 TIGR00905 2A0302 transporter, 96.6 1.6 3.4E-05 47.6 41.5 38 319-359 270-307 (473)
49 PF13520 AA_permease_2: Amino 96.6 1.4 2.9E-05 46.9 33.9 37 321-360 262-298 (426)
50 COG1953 FUI1 Cytosine/uracil/t 96.5 1.7 3.7E-05 47.5 31.9 140 70-210 51-213 (497)
51 COG4147 DhlC Predicted symport 96.5 1.8 3.8E-05 47.1 30.5 79 106-186 93-172 (529)
52 PRK10644 arginine:agmatin anti 96.4 1.8 3.8E-05 46.7 42.1 37 95-133 51-87 (445)
53 PRK11021 putative transporter; 96.2 2.1 4.6E-05 45.5 39.1 37 96-134 44-80 (410)
54 TIGR00908 2A0305 ethanolamine 96.1 2.5 5.4E-05 45.5 43.3 37 96-134 52-88 (442)
55 TIGR01773 GABAperm gamma-amino 96.0 2.8 6.2E-05 45.2 41.8 81 49-134 12-93 (452)
56 TIGR03810 arg_ornith_anti argi 96.0 3.1 6.7E-05 45.2 43.2 39 319-360 266-304 (468)
57 TIGR03813 put_Glu_GABA_T putat 96.0 3.2 6.9E-05 45.1 39.7 62 67-134 13-79 (474)
58 PRK10746 putative transport pr 95.8 3.7 8.1E-05 44.6 41.8 98 98-199 57-155 (461)
59 COG1115 AlsT Na+/alanine sympo 95.7 3.8 8.2E-05 44.3 31.1 284 67-368 73-385 (452)
60 TIGR00913 2A0310 amino acid pe 95.6 4.2 9.2E-05 44.1 44.5 79 50-134 3-85 (478)
61 TIGR00912 2A0309 spore germina 95.6 3.5 7.6E-05 42.9 31.6 100 96-207 46-151 (359)
62 TIGR00909 2A0306 amino acid tr 95.5 4.2 9.2E-05 43.3 37.1 37 96-134 48-84 (429)
63 PRK10197 gamma-aminobutyrate t 95.1 5.9 0.00013 42.8 40.6 37 96-134 37-73 (446)
64 PF02554 CstA: Carbon starvati 95.0 0.81 1.8E-05 48.3 15.2 62 72-135 67-132 (376)
65 PRK10580 proY putative proline 94.9 6.7 0.00014 42.4 41.1 80 50-134 10-90 (457)
66 TIGR00906 2A0303 cationic amin 94.7 9.1 0.0002 42.8 41.2 28 333-360 312-339 (557)
67 PF00324 AA_permease: Amino ac 94.6 0.55 1.2E-05 51.1 13.8 34 322-358 279-312 (478)
68 PRK11357 frlA putative fructos 94.6 7.9 0.00017 41.6 35.3 38 95-134 54-91 (445)
69 PRK15015 carbon starvation pro 94.1 2.7 5.9E-05 47.4 17.6 62 72-135 98-163 (701)
70 COG1966 CstA Carbon starvation 94.1 12 0.00025 41.6 35.1 53 81-134 75-131 (575)
71 PF05525 Branch_AA_trans: Bran 94.0 11 0.00024 40.8 35.1 77 63-141 9-86 (427)
72 KOG1289 Amino acid transporter 93.3 16 0.00034 40.6 24.7 32 430-461 446-477 (550)
73 PF03845 Spore_permease: Spore 92.7 13 0.00029 38.1 29.8 127 93-233 37-172 (320)
74 PRK15433 branched-chain amino 92.0 21 0.00046 38.8 33.2 86 51-140 5-90 (439)
75 PRK10435 cadB lysine/cadaverin 91.1 25 0.00054 37.8 44.8 78 50-134 6-84 (435)
76 COG0531 PotE Amino acid transp 91.0 24 0.00053 37.6 36.2 37 319-358 274-310 (466)
77 COG0833 LysP Amino acid transp 90.8 31 0.00067 38.4 28.7 138 60-210 60-202 (541)
78 TIGR03428 ureacarb_perm permea 90.6 29 0.00063 37.7 39.0 43 90-134 53-95 (475)
79 PRK10655 potE putrescine trans 89.3 34 0.00074 36.6 42.6 34 99-134 53-86 (438)
80 KOG1286 Amino acid transporter 87.1 57 0.0012 36.7 21.3 30 333-362 316-348 (554)
81 PRK10836 lysine transporter; P 86.7 53 0.0011 35.9 41.8 77 49-130 15-93 (489)
82 PLN03074 auxin influx permease 85.2 64 0.0014 35.4 30.5 32 360-391 336-368 (473)
83 PRK03557 zinc transporter ZitB 79.0 83 0.0018 32.4 16.2 19 188-206 81-99 (312)
84 COG1114 BrnQ Branched-chain am 68.8 1.8E+02 0.0039 31.6 35.8 75 62-137 10-84 (431)
85 KOG1304 Amino acid transporter 68.1 1.9E+02 0.0041 31.7 32.9 141 300-458 296-443 (449)
86 KOG2349 Na+:iodide/myo-inosito 65.2 2.5E+02 0.0053 31.9 18.0 109 67-181 57-170 (585)
87 TIGR01297 CDF cation diffusion 57.4 1.9E+02 0.0042 28.5 12.7 17 188-204 52-68 (268)
88 PRK09509 fieF ferrous iron eff 56.1 2.4E+02 0.0051 28.8 14.6 18 188-205 73-90 (299)
89 KOG1303 Amino acid transporter 56.1 3E+02 0.0066 30.0 27.6 133 117-254 105-248 (437)
90 PF06738 DUF1212: Protein of u 53.5 95 0.0021 29.3 9.2 10 156-165 115-124 (193)
91 PRK15238 inner membrane transp 45.6 4.4E+02 0.0095 28.8 37.8 44 89-133 39-86 (496)
92 COG0053 MMT1 Predicted Co/Zn/C 43.5 1.4E+02 0.0031 30.8 9.3 91 188-289 75-166 (304)
93 PRK04125 murein hydrolase regu 43.4 2.2E+02 0.0048 26.2 9.4 50 160-212 28-77 (141)
94 PF05313 Pox_P21: Poxvirus P21 38.9 3.6E+02 0.0078 25.9 10.2 68 409-484 87-157 (189)
95 PF00209 SNF: Sodium:neurotran 38.4 5.8E+02 0.013 28.2 22.8 19 336-354 349-367 (523)
96 PF06724 DUF1206: Domain of Un 36.9 1.2E+02 0.0027 24.0 6.0 33 314-349 31-64 (73)
97 COG4239 ABC-type uncharacteriz 36.3 3.3E+02 0.007 28.1 10.0 53 71-134 123-175 (341)
98 COG1292 BetT Choline-glycine b 36.0 6.7E+02 0.015 28.2 26.9 136 281-427 345-490 (537)
99 PRK10420 L-lactate permease; P 33.0 4.8E+02 0.01 29.4 11.9 43 236-281 488-530 (551)
100 PRK09928 choline transport pro 33.0 8.3E+02 0.018 28.3 25.6 82 334-424 407-494 (679)
101 COG1230 CzcD Co/Zn/Cd efflux s 31.5 6.1E+02 0.013 26.3 15.6 56 188-249 84-139 (296)
102 PRK09695 glycolate transporter 25.7 9.9E+02 0.021 27.0 12.8 43 236-281 496-538 (560)
103 PF11196 DUF2834: Protein of u 25.5 4.3E+02 0.0093 22.6 10.0 57 439-495 39-95 (97)
104 PF06609 TRI12: Fungal trichot 24.0 1.1E+03 0.024 26.9 17.6 24 273-298 233-256 (599)
105 PF11654 DUF2665: Protein of u 23.0 1.5E+02 0.0033 22.1 3.8 35 93-130 12-46 (47)
106 PRK05349 Na(+)-translocating N 22.5 7E+02 0.015 27.0 10.3 53 59-111 63-141 (405)
107 PRK15433 branched-chain amino 22.1 1.1E+03 0.023 25.9 13.5 60 119-180 267-326 (439)
108 PF06570 DUF1129: Protein of u 22.1 7.1E+02 0.015 23.9 13.2 54 411-467 119-173 (206)
109 COG5446 Predicted integral mem 22.0 5.2E+02 0.011 25.0 8.2 54 14-70 31-87 (233)
110 COG4129 Predicted membrane pro 21.7 5.8E+02 0.012 26.8 9.4 19 279-297 129-147 (332)
111 PF01788 PsbJ: PsbJ; InterPro 21.3 1.6E+02 0.0035 21.1 3.5 15 164-178 6-20 (40)
112 COG3949 Uncharacterized membra 20.6 1E+03 0.022 25.2 17.2 123 320-466 69-200 (349)
113 COG2966 Uncharacterized conser 20.6 6.2E+02 0.013 25.4 9.0 10 156-165 137-146 (250)
114 KOG1288 Amino acid transporter 20.2 1.1E+03 0.024 27.7 11.5 29 336-364 373-401 (945)
No 1
>KOG1291 consensus Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.3e-114 Score=891.01 Aligned_cols=445 Identities=61% Similarity=1.007 Sum_probs=426.1
Q ss_pred CCCCccHHHHHHhhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhh
Q 010382 47 TAPPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREE 126 (512)
Q Consensus 47 ~~~~~~~~~l~~~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~ 126 (512)
+.++++|||+|+++||||+||+||+||||++||+||||++||+|||++++++++++++|++|||+|+||||||+|.||+|
T Consensus 19 ~~~~~s~~k~~~F~GPGfLmSIAYlDPGN~etdlqaGA~~~YkLLwilL~a~~~alllQ~LaARLGvVTG~hLAe~Cr~~ 98 (503)
T KOG1291|consen 19 KPPKFSWRKLWKFTGPGFLMSIAYLDPGNIETDLQAGARAGYKLLWILLLANFMALLLQRLAARLGVVTGKHLAEICREE 98 (503)
T ss_pred CccchHHHHHHHHcCCceEEEEEEecCCcchhhhhcchhhchhHHHHHHHHHHHHHHHHHHHHHHcccccHHHHHHHHHH
Confidence 46789999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 010382 127 YPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL 206 (512)
Q Consensus 127 yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l 206 (512)
||||.|+.+|+++|++++++|+||++|+|+|+|+|++ +|+|+||++|++||++++++.|||.||+|.++++++..|.+
T Consensus 99 Ypk~~~~~Lwi~aEiAiI~sDiqEVIGTAiAlniL~~--IPL~~GVliTilD~f~fL~l~kyGiRklE~~~~~Li~~mai 176 (503)
T KOG1291|consen 99 YPKWPRMVLWIMAEIAIIASDIQEVIGTAIALNILSN--IPLWAGVLITILDTFLFLFLDKYGIRKLEAFFAFLIVTMAI 176 (503)
T ss_pred ccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999999999 99999999999999999999999999999999999999999
Q ss_pred HHHHhhheecCChhhhhhcccccCCC---hhHHHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHHhHHHHHH
Q 010382 207 SFAWMFGETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIES 283 (512)
Q Consensus 207 ~F~~~~~~~~P~~~~v~~G~~vP~~~---~~~l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~~~~~d~ 283 (512)
||.+++..++|+.++++.|.++|+++ ++.+.+++|++||+|||||+|+||++||+|+.|++.+++++|+++|..+|+
T Consensus 177 ~F~~el~~~kp~~~~~l~g~fvP~~~~~~~~~~~~avgilGA~IMPHnlyLhSaLV~sR~~d~~~~~~v~ea~~y~~ies 256 (503)
T KOG1291|consen 177 SFGVELGVSKPSGGELLFGGFVPSLSGCGSEGLYQAVGILGAVIMPHNLYLHSALVQSRLIDRDVKKGVYEANNYFPIES 256 (503)
T ss_pred HHheeEEEecCCchheeeeeecccccCCCCcHHHHHHHHhceeeccchhhhhhhhhcccccCHhhhhhhHHhhhcccHHH
Confidence 99999999999999999999999987 789999999999999999999999999999999998999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHH-HhhhccCCcccc-------------cccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010382 284 TLALVVSFMINLFVTTVF-AKGFYGTEQANN-------------IGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSS 349 (512)
Q Consensus 284 ~~~l~vs~lI~~~i~~v~-A~~l~~~~~~~~-------------~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sS 349 (512)
.+++.++|.||.+++.++ |+.+|++.+... .++.++++.|++.+|+ ++.++|++|+++|||||
T Consensus 257 ~ial~vsF~in~~VisvF~a~~f~~~t~~~v~g~~~~~s~~a~~~Dl~~~~~~L~~~~g~---~a~~Ifai~lLasGQSs 333 (503)
T KOG1291|consen 257 AIALFVSFSINLFVISVFTAAGFYNKTILDVAGACLYNSNEADDADLFSAGLLLQCYFGP---AALYIFAIGLLASGQSS 333 (503)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhcCcchhhhhhhhhcCCCcchhhhhHHHHHHHHHHhcc---HHHHHHHHHHHHCCCcc
Confidence 999999999999999999 999998775432 2477789999999998 99999999999999999
Q ss_pred HHhhhhhHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc
Q 010382 350 TITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQE 429 (512)
Q Consensus 350 tit~t~ag~~v~~gfl~~~~~~~~~~~~~~~~aivpal~va~~~g~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n~~ 429 (512)
++||||+||++||||+||++++|.|+++||++|++|++++++.+|.+ +++++++++||+|+++|||+++|++.++|+|
T Consensus 334 titgTyaGQ~VmeGFLn~~l~~W~r~liTR~iAIiPtL~va~~~g~~--~l~~l~~~~nvl~S~~LPFa~iPLl~ftS~r 411 (503)
T KOG1291|consen 334 TITGTYAGQFVMEGFLNLKLPPWLRRLITRSIAIIPTLIVALTSGED--GLSGLNDFLNVLQSLQLPFAVIPLLTFTSSR 411 (503)
T ss_pred cceeeeeeeEeecccccccchHHHHHHHHHHHHHHhhhheeeeeCcc--cHHHHHHHHHHHHHHhhhHHHhhHHhhhccH
Confidence 99999999999999999999999999999999999999999988854 4899999999999999999999999999999
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhccc-chhHHHHHHHHHHHHHHHHHHHHHhcccc
Q 010382 430 HIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSSEVN-GVLIATVIGVFTAGYVAFIIYLVSRGITF 498 (512)
Q Consensus 430 ~iMG~~~n~~~~~il~~~~~~~i~~ln~~~l~~~l~~~~~-~~~~~~~~~~~~~~y~~~~~yl~~~~~~~ 498 (512)
++||+|+|+...+..+|.+..+++.+|.|++++....... ++.++..+....+.|++|++||+.+.++.
T Consensus 412 ~IM~~~~~~~~~~~~~~~~~~~~~~in~y~~v~~~~~~~~~~~~~~~~~~~~~~~y~~~i~yL~~~~l~~ 481 (503)
T KOG1291|consen 412 KIMGVFKNGLVTEELTWTVAALVLGINGYFLVSFFWSLVGKHSKIVVTVNVWTLAYLAFILYLAATCLNA 481 (503)
T ss_pred HHhhhhccCccceeeeehheeeeeeeeeEEeeeehhhhcCCceeeehhHHHHHHHHHHHHHHHHHHHHHH
Confidence 9999999999999999999999999999999988877665 56778888999999999999999987554
No 2
>PRK00701 manganese transport protein MntH; Reviewed
Probab=100.00 E-value=4.3e-84 Score=689.19 Aligned_cols=407 Identities=40% Similarity=0.701 Sum_probs=378.5
Q ss_pred CCccHHHHHHhhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCC
Q 010382 49 PPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128 (512)
Q Consensus 49 ~~~~~~~l~~~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg 128 (512)
++..+|++++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++|++++|+|++|||+++|.||||||
T Consensus 26 ~~~~~~~~l~~lGPG~l~a~a~idpG~i~t~~~aGA~~Gy~LLW~llls~~~~~~~Q~~~~RlgivTG~~l~~~ir~~~~ 105 (439)
T PRK00701 26 GRSFWKRLLAFLGPAFLVAVGYMDPGNWATNIQGGSQFGYTLLWVILLSNLMAMLLQSLSAKLGIATGRDLAQACRDRYP 105 (439)
T ss_pred cchhHHHHHHHcCcHHHhhhheecchHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhHhhhhcCCCHHHHHHHHCC
Confidence 44579999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 010382 129 SWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSF 208 (512)
Q Consensus 129 ~~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F 208 (512)
|+.++++|+.++++++++|++|++|+++|+|+++| +|.+++++++++++++++++.+++||++||++.+++++|.+||
T Consensus 106 ~~~~~~~~~~~~l~~~~~~~~e~~G~a~al~ll~g--ip~~~~v~i~~~~~~~~l~l~~~~y~~~E~i~~~lv~~m~l~f 183 (439)
T PRK00701 106 RPVVWFLWIQAELAIMATDLAEVIGAAIALKLLFG--IPLLQGALITALDTFLILMLQRRGFRPLEAIIGGLLLVIAAAF 183 (439)
T ss_pred chHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHH
Confidence 99999999999999999999999999999999998 8999999999988777766667778999999999999999999
Q ss_pred HHhhheecCChhhhhhcccccC---CCh-hHHHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHHhHHHHHHH
Q 010382 209 AWMFGETKPSGSELLIGILVPK---LSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIEST 284 (512)
Q Consensus 209 ~~~~~~~~P~~~~v~~G~~vP~---~~~-~~l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~~~~~d~~ 284 (512)
+++++.++|||+|+++| ++|+ +|+ ++++.++|++|||+||||+|+||+++|+|+.+ ++++..++++|++|+|+.
T Consensus 184 ~~~~~~~~P~~~~v~~G-l~P~~~~~p~~~~~~~~iaiiGttv~P~~~f~~ss~v~~k~~~-~~~~~~~~~l~~~r~Dt~ 261 (439)
T PRK00701 184 IVELFLAQPDWAAVLKG-FIPSSEILPNPEALYLAAGILGATVMPHNLYLHSSLVQTRVVG-RTGEEKREALRFTRIDSA 261 (439)
T ss_pred HHHHheeCCCHHHHhcc-cCCCCcCCCCccHHHHHHHHHHHHHhHHHHHHHHHHHHhcccc-CChHhHHHHHHHHHHHHH
Confidence 99999999999999999 8999 874 67899999999999999999999999888544 334456788999999999
Q ss_pred HHHHHHHHHHHHHHHHHHhhhccCCcccccccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHHHHhhh
Q 010382 285 LALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGF 364 (512)
Q Consensus 285 ~~l~vs~lI~~~i~~v~A~~l~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~v~~gf 364 (512)
+++.+++++|.++++++|..+|+++..+..+..|++++|+|.+|+ +++++|++|+++||++|++++++++++++|+|
T Consensus 262 ~g~~i~~li~~ai~v~~A~~l~~~g~~~~~~~~~~a~~L~p~~G~---~a~~lFaiGL~aag~sS~i~~~~a~~~v~~~~ 338 (439)
T PRK00701 262 IALTIAGFVNAAMLILAAAAFHASGHTDVADIEDAYLLLSPLLGA---AAATLFGIALLASGLSSTVVGTLAGQIVMEGF 338 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHhccCCCCCcCCHHHHHHHHHHHHhH---HHHHHHHHHHHHhHhHHHhHHHHHHHHHHHHH
Confidence 999999999999999999999987754456789999999999998 99999999999999999999999999999999
Q ss_pred cccchhhhHHHHHHHHHHHHHHHHHHHhhc-CCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCchHHHHH
Q 010382 365 LNLRLKKWLRALITRSCAIVPTIIVALVFD-TSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKM 443 (512)
Q Consensus 365 l~~~~~~~~~~~~~~~~aivpal~va~~~g-~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n~~~iMG~~~n~~~~~i 443 (512)
++|+.++|.|+..+|.++++|++++.++.+ .+ +.++++++|++|++++|++++|+++++|||++||+|||+++.|+
T Consensus 339 l~~~~~~~~~~~~~~~~~ii~a~~~~~~~~~~~---p~~lli~aqv~~~i~LP~~~~~ll~l~~~~~imG~~~~~~~~~~ 415 (439)
T PRK00701 339 LRLRIPLWVRRLITRGLAMVPALIVILLGGELD---PTRLLVLSQVVLSFGLPFALIPLLLFTSDRKLMGELVNPRWVKI 415 (439)
T ss_pred cCCCCChHHHHHHHHHHHHHHHHHHHHhcCCCC---HHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHhhccchhhHHHHH
Confidence 999999999999999999999988765432 33 56888999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHh
Q 010382 444 VSWLVAVLVILINGYLLLEFFS 465 (512)
Q Consensus 444 l~~~~~~~i~~ln~~~l~~~l~ 465 (512)
++|++.++++.+|+++++++++
T Consensus 416 ~~~~~~~~i~~l~~~~~~~~~~ 437 (439)
T PRK00701 416 IAWIIAVLIVALNIYLLYQTFT 437 (439)
T ss_pred HHHHHHHHHHHHHHHHHHHHHc
Confidence 9999999999999999998875
No 3
>TIGR01197 nramp NRAMP (natural resistance-associated macrophage protein) metal ion transporters. This model describes the Nramp metal ion transporter family. Historically, in mammals these proteins have been functionally characterized as proteins involved in the host pathogen resistance, hence the name - NRAMP. At least two isoforms Nramp1 and Nramp2 have been identified. However the exact mechanism of pathogen resistance was unclear, until it was demonstrated by expression cloning and electrophysiological techniques that this protein was a metal ion transporter. It was also independently demonstrated that a microcytic anemia (mk) locus in mouse, encodes a metal ion transporter (DCT1 or Nramp2). The transporter has a broad range of substrate specificity that include Fe+2, Zn+2, Mn+2, Co+2, Cd+2, Cu+2, Ni+2 and Pb+2. The uptake of these metal ions is coupled to proton symport. Metal ions are essential cofactors in a number of biological process including, oxidative phosphorylation, gene
Probab=100.00 E-value=9.9e-80 Score=645.49 Aligned_cols=372 Identities=47% Similarity=0.799 Sum_probs=339.8
Q ss_pred HHHHHhhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHH
Q 010382 54 KKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (512)
Q Consensus 54 ~~l~~~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~ 133 (512)
||+++++|||++++++|+||||++|++|+||+|||+|+|++++++++++++||+++|+|++|||+++|.|||+|||+.++
T Consensus 1 ~~~l~~lGPg~lva~a~idPG~i~t~~~aGa~fGy~LLW~llls~~~~~~~Q~~aaRlg~vTg~~l~~~~r~~~~~~~~~ 80 (390)
T TIGR01197 1 RKLWAFIGPGFLMSIAYIDPGNYSTDLQAGAAAGYKLLWVLLLSNIMALLLQRLCARLGVVTGLDLAEVCREHYPKVPRI 80 (390)
T ss_pred CcHHHHhChHHHHHHHhcCchHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHheeecCCCHHHHHHHHCCCchHH
Confidence 57899999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Q 010382 134 VLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG 213 (512)
Q Consensus 134 ~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~ 213 (512)
.+|++++++++++|++|++|+|+|+|+++| +|.|+++++++++++.++++.+++||++||++..++.+|.+||+++++
T Consensus 81 ~~~~~~~l~ii~~~~~e~~G~a~al~ll~g--~p~~~~v~~~~~~~~~~~~~~~~~yr~~E~~~~~lv~~m~~~f~~~~~ 158 (390)
T TIGR01197 81 TLWILAELAIIATDMAEVIGTAIALNLLSH--IPLWGGVLITIVDVFLFLFLDKPGLRILEAFVALLVTIVAICFAYELF 158 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CcHHHHHHHHHHHHHHHHHHHhCCceeHHHHHHHHHHHHHHHHHHHHh
Confidence 999999999999999999999999999998 899999999888877777777788899999999999999999999999
Q ss_pred eecCChhhhhhcccccCCC---hhHHHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHH-------------h
Q 010382 214 ETKPSGSELLIGILVPKLS---SKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEAL-------------R 277 (512)
Q Consensus 214 ~~~P~~~~v~~G~~vP~~~---~~~l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~-------------~ 277 (512)
.++|||+++++|.++|++| ++++..++|++|||+||||+|+||+++|+|++++++++.+++++ +
T Consensus 159 ~~~P~~~~~~~g~~vP~~p~~~~~~~~~~vaiiGttv~p~~~fl~s~lv~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 238 (390)
T TIGR01197 159 YAKPGQVKVLFGGFVPSCAVFGTDGLLQAVGILGATVMPHSLYLHSALVQSRLVDRDVKEGVSEANMYRPIEAAIALSVS 238 (390)
T ss_pred eeCCCHHHHhhcccCCCccCCCCchHHHHHHHHhhhhhHHHHHHHHHhhhccccCcccchhhhhhhhhchhHHHHHHHHH
Confidence 9999999999998899876 57899999999999999999999999999999876654444434 5
Q ss_pred HHHHHHHHHHHHHH-HHHHHHHHHHHhhhccCCc-ccccccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhh
Q 010382 278 YYSIESTLALVVSF-MINLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTY 355 (512)
Q Consensus 278 ~~~~d~~~~l~vs~-lI~~~i~~v~A~~l~~~~~-~~~~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ 355 (512)
+.|.|+.++++... ++|.++++++|..+|+++. .+..+++++++.|+|.+|+ +++++|++|+++||+||++|+++
T Consensus 239 ~~~~d~~~~i~~~~~~v~~~ilv~aaa~l~~~~~~~~~~~~~~~~~~L~p~~G~---~a~~lF~igLlaAG~sS~it~~~ 315 (390)
T TIGR01197 239 FSINEFVIALFTAALFVNTNILVVAGATLFNSNNNADAADLFSIGVLLGCLFSP---AAGYIFAVGLLAAGQSSGMVGTY 315 (390)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCcCcCCHHHHHHHHHHHhhH---HHHHHHHHHHHHhHHHHHHHHHH
Confidence 56667777776644 4899999999999997543 4566788999999999999 99999999999999999999999
Q ss_pred hHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc
Q 010382 356 AGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIM 432 (512)
Q Consensus 356 ag~~v~~gfl~~~~~~~~~~~~~~~~aivpal~va~~~g~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n~~~iM 432 (512)
+||++++||+|||.++|.|+..+|+++++|++++..+.|.. ++++++.++|++|+++||++++|+++++|||++|
T Consensus 316 ag~~v~~gfl~~~~~~~~r~~~~~~~~ii~aliv~~~~g~~--~p~~liv~aQv~~~l~LP~~~i~Ll~~~~~k~lM 390 (390)
T TIGR01197 316 SGQFVMEGFLNWRWSPWLRRLITRAIAIIPCLLVAAFGGRE--GLTGALNASQVVLSLLLPFALIPLIMFTSSKKIM 390 (390)
T ss_pred HHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHhcCC--ChHHHHHHHHHHHHHHHHHHHHHHHHHhCCcccC
Confidence 99999999999999999999999998999999887665433 2578999999999999999999999999999998
No 4
>COG1914 MntH Mn2+ and Fe2+ transporters of the NRAMP family [Inorganic ion transport and metabolism]
Probab=100.00 E-value=2.2e-78 Score=635.45 Aligned_cols=405 Identities=39% Similarity=0.653 Sum_probs=379.8
Q ss_pred CCCccHHHHHHhhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhC
Q 010382 48 APPFSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEY 127 (512)
Q Consensus 48 ~~~~~~~~l~~~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~y 127 (512)
.++.++|++++++|||++++.+|+||||++|++|+|++|||+|+|++++++++.+++|++++|+|++|||+++|.|||+|
T Consensus 8 ~~~~~~~~~l~~lGPg~lva~a~iDpg~~at~~~~Ga~~Gy~ll~vills~l~~~~~Q~~~arLgivTG~~laq~ir~~y 87 (416)
T COG1914 8 KKRSTLRKLLALLGPGFLVAVAYVDPGNIATSAQAGAQYGYSLLWVILLSNLMAYILQELSARLGIVTGKGLAEAIRERY 87 (416)
T ss_pred chHHHHHHHHHhhCcHHHHHHhccCchhHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCcHHHHHHHHc
Confidence 34567899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 010382 128 PSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 207 (512)
Q Consensus 128 g~~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~ 207 (512)
+|+.++++|+.++++++++|++|++|+|+|+|++++ +|+.++++++++++++++..+ |||++||+...++.++.+|
T Consensus 88 ~~~~~~~~~~~~~i~~~at~iae~~G~aial~ll~~--ip~~~g~iItav~~~iil~~~--~~r~~E~~v~~l~~~~~i~ 163 (416)
T COG1914 88 LPGLGILLWILAEIAGIATDIAEVAGIAIALNLLFG--IPLIIGAVITAVDVLIILLLK--GYRLLERVVLILGLVLVIL 163 (416)
T ss_pred cchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC--ChHHHHHHHHHHHHHHHHHhc--chHHHHHHHHHHHHHHHHH
Confidence 999999999999999999999999999999999998 999999999999887766655 6799999999999999999
Q ss_pred HHHhhheecCChhhhhhcccccCCCh-hHHHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHHhHHHHHHHHH
Q 010382 208 FAWMFGETKPSGSELLIGILVPKLSS-KTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLA 286 (512)
Q Consensus 208 F~~~~~~~~P~~~~v~~G~~vP~~~~-~~l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~~~~~d~~~~ 286 (512)
|+++++.++|+|+++.++.++|+.|. ++++.++|++|||||||++|+||+++|+++. +++..+++.|+.++|+.++
T Consensus 164 ~~~~~~~~~p~~~~~~~~~f~P~~~~~~~l~~ii~ilGaTVmP~i~y~~s~~v~~~~~---~~~~~~~~~~~~~~d~~i~ 240 (416)
T COG1914 164 FVYVAFVAPPPWGEVAKGDFLPSSPWTEALLLIIAILGATVMPHILYLHSSLVQDAGI---KGEENLRALRYSRIDTIIG 240 (416)
T ss_pred HHHHHhhcCCCHHHHhccCCCCCCcchhHHHHHHHHhccchhHHHHHhhcceeccccc---cchhHHHHHHHHHHHHHHH
Confidence 99999999999999999989999876 8999999999999999999999999998432 2344578999999999999
Q ss_pred HHHHHHHHHHHHHHHHhhhccCCc-ccccccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHHHHhhhc
Q 010382 287 LVVSFMINLFVTTVFAKGFYGTEQ-ANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFL 365 (512)
Q Consensus 287 l~vs~lI~~~i~~v~A~~l~~~~~-~~~~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~v~~gfl 365 (512)
+....++|.+++++.|.++|.++. ....+.+++.+.++|.+|+ .+..+|++++++||++|+.+++|++|.++++++
T Consensus 241 ~~~a~lv~~ail~~aa~~~~~~~~~~~~~~~~~a~~~l~~~~G~---~~~~lF~v~llasg~~s~~~~~~a~~~~~~g~~ 317 (416)
T COG1914 241 MIIALLVNLAILIVAAAGFHNSGPNQDVADAYDAYLLLAPLLGS---AAFVLFGVALLAAGLSSTVVATYAGQIVMEGFL 317 (416)
T ss_pred HHHHHHHHHHHHHHHHHhhcCCCccccccchHHHHHHhhhhhhh---HHHHHHHHHHHHhHHHHHHHHhhhhHHHHHhhh
Confidence 998899999999999999998875 3455688899999999998 899999999999999999999999999999999
Q ss_pred ccchhhhHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCchHHHHHHH
Q 010382 366 NLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGPILKMVS 445 (512)
Q Consensus 366 ~~~~~~~~~~~~~~~~aivpal~va~~~g~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n~~~iMG~~~n~~~~~il~ 445 (512)
+++.++|.|+..+|.++++|+..+.+.+| + +..++.++|+++++++||+++|++.+++||++||+|+|++|.++++
T Consensus 318 ~~~~~~~~r~~i~~~~~~ip~~~i~i~~g-~---~~~lL~~sqvl~~~~lP~~~~~ll~~~~~k~~mg~~~~~~~~~~~~ 393 (416)
T COG1914 318 NWRIPLWRRRLITRTFAIVPGLAIIILFG-D---PARLLVFSQVLLSVILPFALIPLLLLTSDKKLMGDYKNPRWLTVLG 393 (416)
T ss_pred cccCchHhhHHHHHHHHHHHHHHHHHHHc-c---HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhcccchHHHHHHH
Confidence 99999999999999999999888878888 4 5688999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHHHHHhh
Q 010382 446 WLVAVLVILINGYLLLEFFSS 466 (512)
Q Consensus 446 ~~~~~~i~~ln~~~l~~~l~~ 466 (512)
|.+.+++..+|++++++++.+
T Consensus 394 ~~v~~~i~~L~i~li~~~~~~ 414 (416)
T COG1914 394 WIVVILIVALNIILLVGTLGG 414 (416)
T ss_pred HHHHHHHHHHHHHHHHHHHhc
Confidence 999999999999999988754
No 5
>PF01566 Nramp: Natural resistance-associated macrophage protein; InterPro: IPR001046 The natural resistance-associated macrophage protein (NRAMP) family consists of Nramp1, Nramp2, and yeast proteins Smf1 and Smf2. The NRAMP family is a novel family of functionally related proteins defined by a conserved hydrophobic core of ten transmembrane domains []. Nramp1 is an integral membrane protein expressed exclusively in cells of the immune system and is recruited to the membrane of a phagosome upon phagocytosis. Nramp2 is a multiple divalent cation transporter for Fe2+, Mn2+ and Zn2+ amongst others. It is expressed at high levels in the intestine; and is major transferrin-independent iron uptake system in mammals []. The yeast proteins Smf1 and Smf2 may also transport divalent cations []. The natural resistance of mice to infection with intracellular parasites is controlled by the Bcg locus, which modulates the cytostatic/cytocidal activity of phagocytes. Nramp1, the gene responsible, is expressed exclusively in macrophages and poly-morphonuclear leukocytes, and encodes a polypeptide (natural resistance-associated macrophage protein) with features typical of integral membrane proteins. Other transporter proteins from a variety of sources also belong to this family.; GO: 0005215 transporter activity, 0006810 transport, 0016020 membrane
Probab=100.00 E-value=1.1e-67 Score=551.10 Aligned_cols=356 Identities=36% Similarity=0.583 Sum_probs=328.9
Q ss_pred hhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010382 76 LEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSA 155 (512)
Q Consensus 76 i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l~i~~~la~i~~di~eviG~a 155 (512)
|+|++|+||+|||+|+|++++++++++++|++++|+|++|||++.|.|||+|||+..+++|+.++++++.++++|++|++
T Consensus 1 ~~t~~~aGA~~Gy~Llw~lll~~~~~~~~q~~~~R~~~~Tg~~l~~~~~~~~g~~~~~~~~~~~~l~~~~~~~~~~~g~a 80 (358)
T PF01566_consen 1 IATATQAGAQYGYSLLWVLLLSNLLKYVFQEMAARLGIVTGKGLAEGIRERFGRGWAWFLWILIFLANIATQAAEIIGIA 80 (358)
T ss_pred CcchHHhHHHHCHHHHHHHHHHHHHHHHHHHHHHHHhhhcCCChhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhheecCChhhhhhcccccCCCh-h
Q 010382 156 IAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSS-K 234 (512)
Q Consensus 156 ial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~~~~P~~~~v~~G~~vP~~~~-~ 234 (512)
+|+++++| +|.+.+++++++++++++++.+.+||++||++++++.+|.+||+++++.++|||+++.+|++.|++|. +
T Consensus 81 ~al~ll~g--~~~~~~~~~~~~~~~~ll~~~~~~y~~~E~~~~~lv~~m~l~f~~~~~~~~p~~~~~~~g~~~P~~p~~~ 158 (358)
T PF01566_consen 81 IALNLLFG--IPLWIWVLLVAVIAILLLWLSSGGYRRLERILKVLVAVMVLAFLIAAFIVHPDWGEVARGLVVPSIPGPG 158 (358)
T ss_pred HHHHhhcC--CCcHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHhcchhHHHHhhhccCCCCcchh
Confidence 99999997 89999999999998888885566679999999999999999999999999999999999977799998 9
Q ss_pred HHHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccc
Q 010382 235 TIQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNI 314 (512)
Q Consensus 235 ~l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~~~~~d~~~~l~vs~lI~~~i~~v~A~~l~~~~~~~~~ 314 (512)
++..++|++|||+||||+|+||++++||+++++++.+ ++++|++|+|+.+++++++++|.++++++|.++|+.+ .+..
T Consensus 159 ~~~~~valiGttv~p~~lf~~s~~~~~k~~~~~~~~~-~~~l~~~~~D~~~g~~~~~li~~ai~i~~A~~l~~~~-~~~~ 236 (358)
T PF01566_consen 159 SLLFAVALIGTTVMPHNLFLHSSLVQEKGWTGNRSRP-DEALKYARFDTIIGMIVSFLINVAILIVAAAVLYPGG-SEVE 236 (358)
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHhhhcccCCCcchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc-cchh
Confidence 9999999999999999999999999999988644211 2679999999999999999999999999999999433 2456
Q ss_pred ccchHHHHHHHhhc-CChhHHHHHHHHHHHHhhhhhHHhhhhhHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 010382 315 GLVNAGQYLQEKYG-GGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVF 393 (512)
Q Consensus 315 ~l~~a~~~L~~~~G-~~~~~a~~if~igllaAg~sStit~t~ag~~v~~gfl~~~~~~~~~~~~~~~~aivpal~va~~~ 393 (512)
+.+|+++.|+|.+| + |++++|++|+++|+|||+++++++++++++++++++.+++.|+..+|...+.|++.+.+..
T Consensus 237 ~~~~~~~~L~~~~G~~---~a~~lF~igl~~a~fss~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 313 (358)
T PF01566_consen 237 TAAQAAQALEPLLGSP---WARYLFAIGLFAAGFSSSITATLAGAYVLADFLGWRWSLSRRRLITRAIAFIPALIIALLI 313 (358)
T ss_pred hHHHHHHHHHHhcCch---HHHHhHHHHHHHHHHhhHHHhccccceehHhhhcCCCcHHHHHHHHHHHHHHHHHHHHHHh
Confidence 78999999999999 8 9999999999999999999999999999999999999998888888888888888877766
Q ss_pred cCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccccCCCCchH
Q 010382 394 DTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIMGTFKIGP 439 (512)
Q Consensus 394 g~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n~~~iMG~~~n~~ 439 (512)
+.+.. +.++++++|+++++.+|++++|+++++|||++||+|||+|
T Consensus 314 ~~~~~-~~~ll~~~~v~~~~~lP~~~~~l~~l~n~~~~mG~~~n~~ 358 (358)
T PF01566_consen 314 GAPGA-PVQLLIFAQVLNSLLLPFVAIPLLLLANDKKLMGEYRNSW 358 (358)
T ss_pred cchhh-HHHHHHHHHHHHHHHHHHHHHHHHHHHcChhhhhCcccCC
Confidence 65532 5689999999999999999999999999999999999986
No 6
>PF00474 SSF: Sodium:solute symporter family; InterPro: IPR001734 Sodium/substrate symport (or co-transport) is a widespread mechanism of solute transport across cytoplasmic membranes of pro- and eukaryotic cells. Thereby the energy stored in an inwardly directed electrochemical sodium gradient (sodium motive force, SMF) is used to drive solute accumulation against a concentration gradient. The SMF is generated by primary sodium pumps (e.g. sodium/potassium ATPases, sodium translocating respiratory chain complexes) or via the action of sodium/proton antiporters. Sodium/substrate transporters are grouped in different families based on sequence similarities [, ]. One of these families, known as the sodium:solute symporter family (SSSF), contains over a hundred members of pro- and eukaryotic origin []. The average hydropathy plot for SSSF proteins predicts 11 to 15 putative transmembrane domains (TMs) in alpha-helical conformation. A secondary structure model of PutP from Escherichia coli suggests the protein contains 13 TMs with the N terminus located on the periplasmic side of the membrane and the C terminus facing the cytoplasm. The results support the idea of a common topological motif for members of the SSSF. Transporters with a C-terminal extension are proposed to have an additional 14th TM. An ordered binding model of sodium/substrate transport suggests that sodium binds to the empty transporter first, thereby inducing a conformational alteration which increases the affinity of the transporter for the solute. The formation of the ternary complex induces another structural change that exposes sodium and substrate to the other site of the membrane. Substrate and sodium are released and the empty transporter re-orientates in the membrane allowing the cycle to start again.; GO: 0005215 transporter activity, 0006810 transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3DH4_D 2XQ2_A.
Probab=98.84 E-value=2.1e-06 Score=91.23 Aligned_cols=114 Identities=18% Similarity=0.232 Sum_probs=82.2
Q ss_pred HHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHH-HHHhhHhhhhcCCCHHHHHHhhCCchH--HHHHHHHHHHH
Q 010382 66 MSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLV-QLLSARLGVATGRHLAELCREEYPSWA--RMVLWVMAELA 142 (512)
Q Consensus 66 ~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~-Q~lsaRlgvvTG~~L~e~~r~~yg~~~--~~~l~i~~~la 142 (512)
+.++..+++++....+.+.++|+.-+|..+-..+...++ --++.|+=-....+..|.+++|||+.. +....+...+.
T Consensus 17 ~~at~~s~~t~~G~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~T~~e~~~~Ryg~~~~~~~~~~i~~i~~ 96 (406)
T PF00474_consen 17 LVATWISAWTFIGFPGFAYSYGISGLWYAIGYAIGFLLFALFFAPRLRRSGAVTIPEYLEKRYGSKALLRILAAIIIIVF 96 (406)
T ss_dssp HHHHHSSHHHHTHHHHHHHHT-GGGGHHHHHHHHHHHHHHHHTHHHHHHTT--SHHHHHHHHT-HHH-HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhcCCcceeeeccccchhHHHHHHHHHHhhcccchhhhhhhhhhhcCCchhhhhhcccccchh
Confidence 345678999999999999999999998877666554443 346788887777899999999999987 55555555555
Q ss_pred HHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHH
Q 010382 143 LIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFI 181 (512)
Q Consensus 143 ~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~ 181 (512)
.+.....++.|.+..++.++| +|.+.++++..+.+.+
T Consensus 97 ~~~~~~~q~~~~~~~~~~~~g--i~~~~~~~i~~~i~~i 133 (406)
T PF00474_consen 97 MIPYLAAQLVGGGALLSVLFG--IPYNTAILIVGVIVII 133 (406)
T ss_dssp HHTHHHHHHHHHHHHHHHHTT----HHHHHHHHHHHHHH
T ss_pred hhhhhhccccccccchhhccc--hhhhHHHHHHHHHHHH
Confidence 555556778888888998998 8999888887765443
No 7
>TIGR00813 sss transporter, SSS family. have different numbers of TMSs. A 13 TMS topology with a periplasmic N-terminus and a cytoplasmic C-terminus has been experimentally determined for the proline:Na+ symporter, PutP, of E. coli.
Probab=98.81 E-value=1.9e-05 Score=84.15 Aligned_cols=119 Identities=12% Similarity=0.159 Sum_probs=82.9
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHH----HHHHHHHHhhHhhhhcCCCHHHHHHhhCCc-hHHHHHHH
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATA----VGLLVQLLSARLGVATGRHLAELCREEYPS-WARMVLWV 137 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~----~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~-~~~~~l~i 137 (512)
|+-+.+.+.+.+......+.+.++|+.-.|..+-..+ .++++...--|.+ ..+..|.+++|||+ ..+...-+
T Consensus 11 ~~s~~at~~s~~t~ig~~~~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~~~ 87 (407)
T TIGR00813 11 AASLFASYISASQFLGLPGAIYAYGFAIGFYELGALVLLIILGWLFVPIFINNG---AYTMPEYLEKRFGKRILRGLSVL 87 (407)
T ss_pred HHHHHHHHhhHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CCchhHHHHHHhCchHHHHHHHH
Confidence 3445567899999999999999999988775543332 3333433333444 67899999999998 45544333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 138 MAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 138 ~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
...+..+.....++.|.+..++.++| +|.+.++++.++.+.+....+
T Consensus 88 ~~i~~~~~~~~~q~~g~~~il~~~~g--i~~~~~~ii~~~i~~~Yt~~G 134 (407)
T TIGR00813 88 SLILYIFLYMSVDLFSGALLIELITG--LDLYLSLLLLGAITILYTVFG 134 (407)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--chHHHHHHHHHHHHHHHHHHc
Confidence 33444555556678888888988888 899999888887665555554
No 8
>TIGR02119 panF sodium/pantothenate symporter. Pantothenate (vitamin B5) is a precursor of coenzyme A and is made from aspartate and 2-oxoisovalerate in most bacteria with completed genome sequences. However, some pathogens must import pantothenate. This model describes PanF, a sodium/pantothenate symporter, from a larger family of Sodium/substrate symporters (pfam00474). Several species that have this transporter appear to lack all enzymes of pantothenate biosynthesis, namely Haemophilus influenzae, Pasteurella multocida, Fusobacterium nucleatum, and Borrelia burgdorferi.
Probab=98.76 E-value=0.00027 Score=76.82 Aligned_cols=128 Identities=13% Similarity=0.205 Sum_probs=80.5
Q ss_pred HHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHH--------HHHHhhHhhhhcCCCHHHHHHhhCCc-hHHHHH
Q 010382 65 LMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLL--------VQLLSARLGVATGRHLAELCREEYPS-WARMVL 135 (512)
Q Consensus 65 l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~--------~Q~lsaRlgvvTG~~L~e~~r~~yg~-~~~~~l 135 (512)
-+.+++.+++........+.++|+...|......+++++ +....-|.+ -.++.|..++|||+ ..++..
T Consensus 50 s~~at~~s~~t~~g~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~T~~e~l~~Ryg~~~~~~~~ 126 (471)
T TIGR02119 50 TLVATYGSASSFIGGPGIAYNYGLGWVLLAMIQVPTGYFVLGVLGKKFAIISRKYN---AITINDVLKARYNNKFLVWLS 126 (471)
T ss_pred HHHHHHhhHHHHcCcHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHcCCCchHHHH
Confidence 345667888888888888888888743332222223322 222223333 36899999999995 445554
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH-hcchhHHHHHH
Q 010382 136 WVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE-NYGVRKLEAVF 197 (512)
Q Consensus 136 ~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~-~yg~r~lE~~~ 197 (512)
.+...+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++ -++.-..+.+-
T Consensus 127 ~i~~i~~~~~~~~~ql~g~g~~l~~~~g--i~~~~~iii~~~iv~iYt~~GG~~av~~td~iQ 187 (471)
T TIGR02119 127 SISLLVFFFSAMVAQFIGGARLIESLTG--LSYLTALFIFSSSVLIYTTFGGFRAVALTDAIQ 187 (471)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHH
Confidence 4444445555556678888888998888 999999888876555444443 23333444443
No 9
>PF03222 Trp_Tyr_perm: Tryptophan/tyrosine permease family; InterPro: IPR018227 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. Aromatic amino acids are concentrated in the cytoplasm of Escherichia coli by 4 distinct transport systems: a general aromatic amino acid permease, and a specific permease for each of the 3 types (Phe, Tyr and Trp) []. It has been shown [] that some permeases in E. coli and related bacteria are evolutionary related. These permeases are proteins of about 400 to 420 amino acids and are located in the cytoplasmic membrane and, like bacterial sugar/cation transporters, are thought to contain 12 transmembrane (TM) regions [] - hydropathy analysis, however, is inconclusive, suggesting the possibility of 10 to 12 membrane-spanning domains []. The best conserved domain is a stretch of 20 residues which seems to be located in a cytoplasmic loop between the first and second transmembrane region.
Probab=98.75 E-value=8.3e-05 Score=79.23 Aligned_cols=159 Identities=18% Similarity=0.190 Sum_probs=97.0
Q ss_pred hhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhc--CCCHHHHHHhhCCchHHHHHH
Q 010382 59 FTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVAT--GRHLAELCREEYPSWARMVLW 136 (512)
Q Consensus 59 ~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvT--G~~L~e~~r~~yg~~~~~~l~ 136 (512)
.+|=-+++....+|+|=+.-=.++|...=.-.+..++++.++++.-+.+-+|.-.-+ |.++.+..+|+.||+.+++.|
T Consensus 5 ~~~~~~li~GTaIGAGmLaLP~~~~~~Gf~~~~~~l~~~w~~~~~s~l~~~E~~~~~~~~~~~~~~a~~~lG~~g~~~~~ 84 (394)
T PF03222_consen 5 ILGGVLLIAGTAIGAGMLALPIATAGAGFLPSLILLLIAWPLMYYSGLLLAEVSLNTPEGSSLTSMAEKYLGKKGGIVIG 84 (394)
T ss_pred HHHHHHHHHHccHhHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCHHHHHHHHhChHHHHHHH
Confidence 455556666667888877766664433333345555566666667777777777765 778999999999998887766
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHc----cCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Q 010382 137 VMAELALIGSDIQEVIGSAIAIKILS----NGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMF 212 (512)
Q Consensus 137 i~~~la~i~~di~eviG~aial~lL~----gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~ 212 (512)
+...+.......+-+.|.+--+.-++ +...|.+.+..+..+..-.+++. |.|.++|+..+++..|.++|+...
T Consensus 85 ~~~~~~~y~ll~AYisg~g~~~~~~l~~~~~~~~~~~~~~~~f~~i~~~iv~~---g~~~v~~~n~~lv~~~i~~~~~l~ 161 (394)
T PF03222_consen 85 ISYLFLLYALLVAYISGGGSILSSLLGNQLGTDLSPWLSSLLFTIIFGGIVYF---GTKAVDRINRVLVFGMIISFIILV 161 (394)
T ss_pred HHHHHHHHHHHHHHHHccHHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh---hHHHHHHHHHHHHHHHHHHHHHHH
Confidence 54333332222222233222222222 12255666555544322222233 447899999999999999998877
Q ss_pred heecCChh
Q 010382 213 GETKPSGS 220 (512)
Q Consensus 213 ~~~~P~~~ 220 (512)
...-|+|.
T Consensus 162 ~~~~p~~~ 169 (394)
T PF03222_consen 162 VYLIPHWN 169 (394)
T ss_pred HHHhhhcC
Confidence 77667663
No 10
>PRK09442 panF sodium/panthothenate symporter; Provisional
Probab=98.70 E-value=0.00067 Score=74.08 Aligned_cols=115 Identities=12% Similarity=0.220 Sum_probs=74.3
Q ss_pred HHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHH--------HHHHHHHHhhHhhhhcCCCHHHHHHhhCCch-HHHHHHH
Q 010382 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATA--------VGLLVQLLSARLGVATGRHLAELCREEYPSW-ARMVLWV 137 (512)
Q Consensus 67 s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~--------~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~-~~~~l~i 137 (512)
.+.+.+.+......+...++|++..|......+ ++..+....-|.+ ..+..|.+++||++. .++...+
T Consensus 53 ~at~~s~~t~ig~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~---~~T~~e~l~~Ryg~~~~~~~~~i 129 (483)
T PRK09442 53 IATYISASSFIGGPGAAYKYGLGWVLLAMIQVPTVWLSLGILGKKFAILARKYN---AVTLNDMLRARYQSRLLVWLASL 129 (483)
T ss_pred HHHHhhHhHHhCChhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcC---CccHHHHHHHHhCChHHHHHHHH
Confidence 355678888888888888888876665432222 2222333334443 468999999999964 4444333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 138 MAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 138 ~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
...+..+.....++.|.+..++.++| +|.+.++++..+.+.+.-.++
T Consensus 130 ~~~~~~~~~~~~ql~~~g~~l~~~~g--i~~~~~iii~~~iv~iYt~~G 176 (483)
T PRK09442 130 SLLVFFFAAMTAQFIGGARLLETATG--ISYETGLLIFGITVALYTAFG 176 (483)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhc
Confidence 33334444455677888888999988 899999888776554444443
No 11
>PRK15419 proline:sodium symporter PutP; Provisional
Probab=98.69 E-value=0.00067 Score=74.52 Aligned_cols=120 Identities=14% Similarity=0.136 Sum_probs=78.5
Q ss_pred HHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHH--HHHHHhhHhhhhcC-----CCHHHHHHhhCCch---HHH
Q 010382 64 FLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGL--LVQLLSARLGVATG-----RHLAELCREEYPSW---ARM 133 (512)
Q Consensus 64 ~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~--~~Q~lsaRlgvvTG-----~~L~e~~r~~yg~~---~~~ 133 (512)
+-+.+++............+.++|++-.|..+- ..+++ ....+..|+-.-+. .+..|..++||+++ .+.
T Consensus 49 ~s~~At~~Sa~t~iG~~g~~y~~G~~~~~~~~~-~~~~~~l~~~~~~~~l~~~~~~~~~~~T~~e~l~~Ry~~~~~~~~~ 127 (502)
T PRK15419 49 LSAGASDMSGWLLMGLPGAVFLSGISESWIAIG-LTLGAWINWKLVAGRLRVHTEYNNNALTLPDYFTGRFEDKSRILRI 127 (502)
T ss_pred HHHHHHHHHHHHHHHhhHHHHHcCHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHhcCceeHHHHHHHHhCCCchhHHH
Confidence 334566788888888888999999998886543 32332 23344666554322 47999999999964 333
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 134 VLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 134 ~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
...+...+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 128 ~~~i~~~~~~~~~~~~ql~~~~~~l~~~~g--i~~~~~iii~~~iv~iYt~~G 178 (502)
T PRK15419 128 ISALVILLFFTIYCASGIVAGARLFESTFG--MSYETALWAGAAATILYTFIG 178 (502)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHHhh
Confidence 322322333333334556788888888888 899999888877666555554
No 12
>TIGR02121 Na_Pro_sym sodium/proline symporter. This family consists of the sodium/proline symporter (proline permease) from a number of Gram-negative and Gram-positive bacteria and from the archaeal genus Methanosarcina. Using the related pantothenate permease as an outgroup, candidate sequences from Bifidobacterium longum and several from archaea are found to be outside the clade defined by known proline permeases. These sequences, scoring between 570 and -40, define the range between trusted and noise cutoff scores.
Probab=98.56 E-value=0.00024 Score=77.66 Aligned_cols=118 Identities=17% Similarity=0.236 Sum_probs=72.8
Q ss_pred HHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHH-HH-HHHHhhHhhhhc-----CCCHHHHHHhhCCch---HHHHH
Q 010382 66 MSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVG-LL-VQLLSARLGVAT-----GRHLAELCREEYPSW---ARMVL 135 (512)
Q Consensus 66 ~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~-~~-~Q~lsaRlgvvT-----G~~L~e~~r~~yg~~---~~~~l 135 (512)
+.+++.....+........++|+.-.|... +..++ ++ .-.++.|+-..+ -.+..|.+++|||+. .+...
T Consensus 47 ~~At~~s~~~~~G~~g~~y~~G~~~~~~~~-g~~~~~~~~~~~~~~~~r~~~~~~~~~~T~~e~l~~Ryg~~~~~~~~~~ 125 (487)
T TIGR02121 47 AGASDMSGWLLMGLPGALYVTGLSELWIAI-GLTIGAYINWKFVAPRLRVYTEAAHNSITLPDFFENRFNDKSRLLRIIS 125 (487)
T ss_pred HHHHHHhHHHHHhhHHHHHHhhHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhHhhcCCccHHHHHHHHhCCCCchhHHHH
Confidence 345566666677777777888888778754 32222 11 223455554333 246999999999953 33222
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 136 WVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 136 ~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
-+...+..+.....++.|.+..++.++| +|.+.+++++++.+.+...++
T Consensus 126 ai~~~~~~~~~~~~~l~~~~~~l~~~~g--i~~~~~iii~~~i~~~Yt~~G 174 (487)
T TIGR02121 126 ALIILVFFTIYTSSGLVAGGKLFESTFG--LDYKTGLLIGALIIVIYTFFG 174 (487)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhC--ccHHHHHHHHHHHHHHHHHhh
Confidence 2222233333344566778888888888 899999998877666555554
No 13
>PRK15132 tyrosine transporter TyrP; Provisional
Probab=98.55 E-value=0.00045 Score=73.86 Aligned_cols=159 Identities=13% Similarity=0.081 Sum_probs=91.6
Q ss_pred HhhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHH-HHHHHHHHhhHhhhh--cCCCHHHHHHhhCCchHHHH
Q 010382 58 LFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATA-VGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 58 ~~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~-~~~~~Q~lsaRlgvv--TG~~L~e~~r~~yg~~~~~~ 134 (512)
|.+|=.+++....+|+|=+.==.++|...=+-.+-.++++.+ |.+.-.. -+|.-.- -|.++-+..||++||+.++.
T Consensus 4 ~~~g~~~li~GTaIGAGmLaLPi~~~~~Gf~~~~~~li~~w~~m~~t~l~-l~Ev~~~~~~~~~~~~~a~~~LG~~g~~i 82 (403)
T PRK15132 4 RTLGSIFIVAGTTIGAGMLAMPLAAAGVGFSVTLILLIGLWALMCYTALL-LLEVYQHVPADTGLGTLAKRYLGRYGQWL 82 (403)
T ss_pred cHHHHHHHHHhcchhHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHH-HHHHHcCCCCCCCHHHHHHHHhChHHHHH
Confidence 467888888888999999887777766332222222222222 3333333 3332222 45789999999999987776
Q ss_pred HHHHHHHHHHHHHHHHHHHH-HHHHHHH---ccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 010382 135 LWVMAELALIGSDIQEVIGS-AIAIKIL---SNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 210 (512)
Q Consensus 135 l~i~~~la~i~~di~eviG~-aial~lL---~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~ 210 (512)
.|+.-.........+=..|. .+--|.+ ++..+|.+.+.++..+..-.+++ .|.|.++|+..+++..|.++|+.
T Consensus 83 ~~~~y~fl~y~ll~AYisg~g~il~~~l~~~~~~~i~~~~~~l~F~~~~~~iv~---~g~~~v~~~n~~L~~~~ii~~~~ 159 (403)
T PRK15132 83 TGFSMMFLMYALTAAYISGAGELLASSISDWTGISMSPTAGVLLFTLVAGGVVC---VGTSSVDLFNRFLFSAKIIFLVV 159 (403)
T ss_pred HHHHHHHHHHHHHHHHHhCcHHHHHHHHHHhccCCCChHHHHHHHHHHHHHHHh---ccHHHHHHHHHHHHHHHHHHHHH
Confidence 66544332222222222221 1111222 23225666655554432222222 24589999999999999999987
Q ss_pred hhheecCChh
Q 010382 211 MFGETKPSGS 220 (512)
Q Consensus 211 ~~~~~~P~~~ 220 (512)
.....-|+|.
T Consensus 160 ~~~~l~p~~~ 169 (403)
T PRK15132 160 MLALMMPHIH 169 (403)
T ss_pred HHHHHHHhcC
Confidence 7666677775
No 14
>PRK13629 threonine/serine transporter TdcC; Provisional
Probab=98.53 E-value=0.00077 Score=72.49 Aligned_cols=151 Identities=15% Similarity=0.077 Sum_probs=97.9
Q ss_pred HHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhc---CCCHHHHHHhhCCchHHHHHHHHHH-
Q 010382 65 LMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVAT---GRHLAELCREEYPSWARMVLWVMAE- 140 (512)
Q Consensus 65 l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvT---G~~L~e~~r~~yg~~~~~~l~i~~~- 140 (512)
......+|+|=+.==.++|...=+-++-.++++.++++.-..+-.|.-.-. |.++.+..+|++||..+.+.|+.-.
T Consensus 27 ~l~GTAIGAGmLfLPI~~g~~Gf~p~lillll~~p~m~~s~l~L~e~~L~~~~~~~~i~~v~~~~lG~~g~~i~~ilYff 106 (443)
T PRK13629 27 GLFGTAIGAGVLFFPIRAGFGGLIPILLMLVLAYPIAFYCHRALARLCLSGSNPSGNITETVEEHFGKTGGVVITFLYFF 106 (443)
T ss_pred HHHHHHHhHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCCCCCHHHHHHHHcChhHHHHHHHHHHH
Confidence 344446999999888888887766666677777777777766666775554 6789999999999977766554322
Q ss_pred -----HHHHHHHHHHHHHHHHHHHHHccC-CchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhe
Q 010382 141 -----LALIGSDIQEVIGSAIAIKILSNG-ILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGE 214 (512)
Q Consensus 141 -----la~i~~di~eviG~aial~lL~gg-~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~~ 214 (512)
+..-+..+++.+..-+ .|- .|. .+|.+...++..+. +...-..|.|.++|++.+++..+.++|+...+.
T Consensus 107 ~ly~ll~aY~~~itn~l~sfl-~~q-l~~~~~~r~l~slifv~~---l~~iv~~G~~~v~kv~~~Lv~~~i~~l~~l~~~ 181 (443)
T PRK13629 107 AICPLLWIYGVTITNTFMTFW-ENQ-LGFAPLNRGFVALFLLLL---MAFVIWFGKDLMVKVMSYLVWPFIASLVLISLS 181 (443)
T ss_pred HHHHHHHHHHHHHHHHHHHHH-Hhh-cCcCCccHHHHHHHHHHH---HHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 2222233333332211 111 231 34666544443322 222223355999999999999999999988888
Q ss_pred ecCChh
Q 010382 215 TKPSGS 220 (512)
Q Consensus 215 ~~P~~~ 220 (512)
.-|+|.
T Consensus 182 LiP~w~ 187 (443)
T PRK13629 182 LIPYWN 187 (443)
T ss_pred HHHHcC
Confidence 888885
No 15
>TIGR02711 symport_actP cation/acetate symporter ActP. Members of this family belong to the Sodium:solute symporter family. Both members of this family and other close homologs tend to be encoded next to a member of Pfam family pfam04341, a set of uncharacterized membrane proteins. The characterized member from E. coli is encoded near and cotranscribed with the acetyl coenzyme A synthetase (acs) gene. Proximity to an acs gene was used as one criterion for determining the trusted cutoff for this model. Closely related proteins may differ in function and are excluded by the high cutoffs of this model; members of the family of phenylacetic acid transporter PhaJ can score as high as 1011 bits.
Probab=98.42 E-value=0.0019 Score=71.91 Aligned_cols=121 Identities=17% Similarity=0.203 Sum_probs=85.3
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHH--HHHHhhHhhhhcCCCHHHHHHhhCC-chHHHHHHHHH
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLL--VQLLSARLGVATGRHLAELCREEYP-SWARMVLWVMA 139 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~--~Q~lsaRlgvvTG~~L~e~~r~~yg-~~~~~~l~i~~ 139 (512)
|+-+++.+.+..+.......+..+|++-+|..+ ....+++ .-.++.|+--..-.+..|.+++||+ |..+....+..
T Consensus 75 g~si~at~~SaasflG~~G~~y~~G~~~~~~~~-g~~~~~~i~~~~~a~~lrr~g~~T~~d~l~~Rf~s~~~r~l~ai~~ 153 (549)
T TIGR02711 75 GLAIAGDYMSAASFLGISALVYTSGYDGLIYSL-GFLVGWPIILFLIAERLRNLGRYTFADVASYRLKQRPIRILSACGS 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHH-HHHHHHHHHHHHHHHHHHHcCCccHHHHHHHHcCCcchhHHHHHHH
Confidence 455666788888888888889999999888553 3333331 2234555544445799999999997 55666555544
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 140 ELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 140 ~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
.+..+.....+..|.+..++.++| +|.|.++++.++.+.+...++
T Consensus 154 i~~~~~yl~~ql~g~g~il~~~~g--i~~~~~iii~~~i~~~Yt~~G 198 (549)
T TIGR02711 154 LVVVALYLIAQMVGAGKLIELLFG--LNYHVAVVLVGILMVMYVLFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhh
Confidence 444555556678888888999998 899999988887666555554
No 16
>COG1457 CodB Purine-cytosine permease and related proteins [Nucleotide transport and metabolism]
Probab=98.38 E-value=0.0024 Score=68.70 Aligned_cols=119 Identities=23% Similarity=0.325 Sum_probs=79.8
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhH
Q 010382 90 LLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLW 169 (512)
Q Consensus 90 LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~ 169 (512)
-++.+++.+.++-++....+-.|.-||.+=...-|..+|++.+++.-+...+..++--.-+++=.+.+.+...+ +|.|
T Consensus 54 si~aillG~llG~i~~A~~s~~Ga~~Glpqmi~sR~~fG~~Gs~l~sll~~~~~iGW~~v~~~l~~~a~~~~~~--~~~~ 131 (442)
T COG1457 54 SLLAILLGNLLGGIFMAYFSYQGARTGLPQMILSRYPFGVKGSILPSLLNGITLIGWFGVNVILSGIAIGSGTG--LPVW 131 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccccCCChheeecccccchhHHHHHHHHHHHHhhHHHHHHHHhccccccCCC--CcHH
Confidence 47899999999999999999999999999999999999998775432322233333332233322332222233 7999
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhh
Q 010382 170 SGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFG 213 (512)
Q Consensus 170 ~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~ 213 (512)
+++++.++.+.+..+ +|||.++++-++.+-.+.+.|.+...
T Consensus 132 ~~ili~g~l~~l~~i---fG~r~l~~l~~~a~~~~~~lf~~l~~ 172 (442)
T COG1457 132 AGILIIGVLMTLVTI---FGYRALHKLERIAVPLLLLLFLYLLA 172 (442)
T ss_pred HHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 998888865444333 45566666666666666666665544
No 17
>PRK12488 acetate permease; Provisional
Probab=98.38 E-value=0.0022 Score=71.25 Aligned_cols=121 Identities=15% Similarity=0.188 Sum_probs=86.7
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHH--HHHhhHhhhhcCCCHHHHHHhhCC-chHHHHHHHHH
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLV--QLLSARLGVATGRHLAELCREEYP-SWARMVLWVMA 139 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~--Q~lsaRlgvvTG~~L~e~~r~~yg-~~~~~~l~i~~ 139 (512)
|+-+++.+..+.+.......+..+|++-+|..+ +...++++ -.++.|+=-..-.+..|.+.+||+ |+.+....+..
T Consensus 75 ~~si~at~~Sa~sflG~~G~~y~~G~~~~~~~~-g~~~g~~~~~~~~a~~lr~~g~~T~~d~l~~Rf~s~~~r~laai~~ 153 (549)
T PRK12488 75 GLAIAGDMISAASFLGISAMMFMNGYDGLLYAL-GVLAGWPIILFLIAERLRNLGKYTFADVVSYRLAQGPVRLTAAFGT 153 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhChhHHHHHH-HHHHHHHHHHHHHHHHHHHCCCcchHHHHHHHcCCCcchHHHHHHH
Confidence 556677788888889999999999999887653 33333322 234555544344689999999998 56777665555
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 140 ELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 140 ~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
.+..+.....++.|.+..++.++| +|.+.++++.++.+.+....+
T Consensus 154 i~~~~~yl~~q~~g~g~il~~l~g--i~~~~~iii~~~i~~~Yt~~G 198 (549)
T PRK12488 154 LTVVLMYLVAQMVGAGKLIELLFG--ISYLYAVVIVGALMVLYVTFG 198 (549)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhcc
Confidence 555566666788888888999988 899999888887655554444
No 18
>PRK11375 allantoin permease; Provisional
Probab=98.37 E-value=0.0054 Score=67.20 Aligned_cols=45 Identities=18% Similarity=0.245 Sum_probs=39.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHH
Q 010382 89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (512)
Q Consensus 89 ~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~ 133 (512)
+-++.+++++++..++-.+.++.|..||.+-.-.+|..||++-..
T Consensus 61 ~ai~ai~lG~~i~~~~~~l~g~~G~~~Gl~~~v~sR~sFG~~Gs~ 105 (484)
T PRK11375 61 SIMLAIILSAFFIAAVMVLNGAAGSKYGVPFAMILRASYGVRGAL 105 (484)
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCChhHhHHHHHccccch
Confidence 557788888899999999999999999999999999999976433
No 19
>PRK09395 actP acetate permease; Provisional
Probab=98.32 E-value=0.0046 Score=68.80 Aligned_cols=121 Identities=16% Similarity=0.187 Sum_probs=85.0
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHH--HHHhhHhhhhcCCCHHHHHHhhCC-chHHHHHHHHH
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLV--QLLSARLGVATGRHLAELCREEYP-SWARMVLWVMA 139 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~--Q~lsaRlgvvTG~~L~e~~r~~yg-~~~~~~l~i~~ 139 (512)
|+-+.+.+..+.+.......+..+|++-.|..+- ..+++++ -.++.|+=-..-.+..|..++||+ |..+...-+..
T Consensus 77 ~~si~At~~Sa~tfiG~~g~~y~~G~~~~~~~~~-~~~g~~~~~~~~~~~~r~~g~~T~~d~l~~Rygs~~~r~l~av~~ 155 (551)
T PRK09395 77 GLAIAGDYMSAASFLGISALVFTSGYDGLIYSIG-FLVGWPIILFLIAERLRNLGKYTFADVASYRLKQGPIRTLSACGS 155 (551)
T ss_pred HHHHHHHHHHHHHHHHhhHHHHHhCHHHHHHHHH-HHHHHHHHHHHHHHHHhhCCCccHHHHHHHHcCCchHHHHHHHHH
Confidence 4556677888888888888999999988775542 2222221 224555544445689999999998 45676654444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 140 ELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 140 ~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
.+..+.....+..|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 156 iv~~~~yl~~q~~g~g~il~~~~g--i~~~~~ili~~~i~~iYt~~G 200 (551)
T PRK09395 156 LVVVALYLIAQMVGAGKLIQLLFG--LNYHVAVVLVGVLMMVYVLFG 200 (551)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHhC--CCHHHHHHHHHHHHHHHHhhc
Confidence 455555556778888888988888 899999998887666655554
No 20
>PRK09664 tryptophan permease TnaB; Provisional
Probab=98.30 E-value=0.0026 Score=68.11 Aligned_cols=156 Identities=11% Similarity=0.041 Sum_probs=86.1
Q ss_pred HhhchHHHHHHhhcCCCchhhh-hhHHHHHhHHHHHHHHH---HHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHH
Q 010382 58 LFTGPGFLMSIAFLDPGNLEGD-LQSGAIAGYSLLWLLLW---ATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (512)
Q Consensus 58 ~~lGPG~l~s~a~~dpG~i~t~-~~AGA~~Gy~LLWvlll---a~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~ 133 (512)
|.+|=.++++...+|+|=+.=- ..+|+-|-++.+-.+.. .+.-++.+-|..-|.. .|.++....|+..||..++
T Consensus 10 ~~~gg~~iIaGT~IGAGMLaLP~~~a~~Gf~~s~~ll~~~w~~M~~t~LlllEv~l~~~--~g~~l~tma~~~LG~~g~~ 87 (415)
T PRK09664 10 SAFWGVMVIAGTVIGGGMFALPVDLAGAWFFWGAFILIIAWFSMLHSGLLLLEANLNYP--VGSSFNTITKDLIGNTWNI 87 (415)
T ss_pred chhhhhHHhhhccHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 5788777888888998876532 23333333333222211 1122345667776664 5788999999999998777
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHH-HHH---ccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHH
Q 010382 134 VLWVMAELALIGSDIQEVIGSAIAI-KIL---SNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFA 209 (512)
Q Consensus 134 ~l~i~~~la~i~~di~eviG~aial-~lL---~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~ 209 (512)
+.|+.......+-..+=+.|.+.-+ +.+ .+..+|.+.+.++..+..-.+++. |.|.+||+..+++..|.++|+
T Consensus 88 i~~~~~~fl~Y~Ll~AYisggG~il~~~l~~~~~~~i~~~~~~llF~~~~~~~v~~---gt~~vd~~nr~l~~~~ii~f~ 164 (415)
T PRK09664 88 ISGITVAFVLYILTYAYISANGAIISETISMNLGYHANPRIVGICTAIFVASVLWI---SSLAASRITSLFLGLKIISFV 164 (415)
T ss_pred HHHHHHHHHHHHHHHHHHhccHHHHHHHHhhhccCCCcHHHHHHHHHHHHHHHHHh---chhHHHHHHHHHHHHHHHHHH
Confidence 6666432211111111112222212 222 232366665444433322223333 347888888888899999998
Q ss_pred HhhheecCC
Q 010382 210 WMFGETKPS 218 (512)
Q Consensus 210 ~~~~~~~P~ 218 (512)
......-|+
T Consensus 165 ~~~~~l~~~ 173 (415)
T PRK09664 165 IVFGSFFFQ 173 (415)
T ss_pred HHHHHHhhc
Confidence 765554443
No 21
>TIGR00814 stp serine transporter. The HAAAP family includes well characterized aromatic amino acid:H+ symport permeases and hydroxy amino acid permeases. This subfamily is specific for hydroxy amino acid transporters and includes the serine permease, SdaC, of E. coli, and the threonine permease, TdcC, of E. coli.
Probab=98.17 E-value=0.003 Score=67.45 Aligned_cols=125 Identities=14% Similarity=0.223 Sum_probs=70.0
Q ss_pred HHHHHHHHHHHHHHHHHhhH------hhhhc-CCCHHHHHHhhCCchHHHHHHHHHHH------HHHHHHHHHHHHHHHH
Q 010382 91 LWLLLWATAVGLLVQLLSAR------LGVAT-GRHLAELCREEYPSWARMVLWVMAEL------ALIGSDIQEVIGSAIA 157 (512)
Q Consensus 91 LWvllla~~~~~~~Q~lsaR------lgvvT-G~~L~e~~r~~yg~~~~~~l~i~~~l------a~i~~di~eviG~aia 157 (512)
.|..+++.+..+++...++| +.--. |+++.|..++++||+....+++.-.+ ...+....+..+.-+.
T Consensus 33 ~i~~li~~l~~~pl~~~~~~ll~~~~l~~~~p~~~i~~~~~~~fGk~~G~ii~~lY~~~~~~i~~aY~~~~~~~~~~fl~ 112 (397)
T TIGR00814 33 LWVLVLMAIIAYPLTYFGHRALARFLLSSKNPCEDITEVVEEHFGKNWGILITLLYFFAIYPILLIYSVAITNDSASFLV 112 (397)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 55666666666666666666 34444 78999999999999877654332211 1122222232222211
Q ss_pred HHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhheecCCh
Q 010382 158 IKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKPSG 219 (512)
Q Consensus 158 l~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~~~~P~~ 219 (512)
-.+..+ .|.+....+.. ..++.+.-..|.|.+.|+..+++..+.+.++...+..-|+|
T Consensus 113 ~~~~~~--~p~~~i~~lil--v~il~~iv~~G~~~i~r~~~il~~~~ii~l~~l~~~lip~~ 170 (397)
T TIGR00814 113 NQLGTA--PPLRGLLSLAL--ILILVAIMSFGEKLLFKIMGPLVFPLVLILVLLSLYLIPHW 170 (397)
T ss_pred HhcCCC--CcHHHHHHHHH--HHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 111122 34442111111 12223444557899999999988778777777666666665
No 22
>COG0591 PutP Na+/proline symporter [Amino acid transport and metabolism / General function prediction only]
Probab=98.11 E-value=0.027 Score=61.93 Aligned_cols=128 Identities=16% Similarity=0.218 Sum_probs=79.9
Q ss_pred cCCCchhhhhhHHHHHhHHHHHHHHHHH-HHHHHHHHHhhHhhhhc----CCCHHHHHHhhCC-chHHHHHHHHHHHHHH
Q 010382 71 LDPGNLEGDLQSGAIAGYSLLWLLLWAT-AVGLLVQLLSARLGVAT----GRHLAELCREEYP-SWARMVLWVMAELALI 144 (512)
Q Consensus 71 ~dpG~i~t~~~AGA~~Gy~LLWvllla~-~~~~~~Q~lsaRlgvvT----G~~L~e~~r~~yg-~~~~~~l~i~~~la~i 144 (512)
..+..+..........|+.-+|..+-.+ ..-...-..+.|+=..+ -.++.|..++||| ++.+...-+...+..+
T Consensus 54 ~s~~t~lG~~g~ay~~G~~~~~~~~~~~~~~~~~~~~~~~rl~~~~~~~~~~T~~d~l~~Rf~s~~lr~l~ali~iv~~i 133 (493)
T COG0591 54 TSGWTFLGLPGLAYASGLSGLWIAIGLLIGAFLLWLLFAPRLRRLAKARGATTIPDFLEARFGSKILRILSALIIIVFFI 133 (493)
T ss_pred HHHHHHhcchHHHHhcChHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCccHHHHHHHHcCChHHHHHHHHHHHHHHH
Confidence 4444444455555555999999877653 23333444555555555 4579999999999 6777665454455555
Q ss_pred HHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhc-chhHHHHHHHHH
Q 010382 145 GSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENY-GVRKLEAVFAVL 200 (512)
Q Consensus 145 ~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~y-g~r~lE~~~~~l 200 (512)
.....++.|.+..++..+| +|.+.+..+.+..+.+.-+++.. +...-|.+-..+
T Consensus 134 ~yia~ql~~~~~~~~~~~g--i~~~~~~~~~~~~v~~Yt~~gG~~av~~Td~iqg~i 188 (493)
T COG0591 134 PYIALQLVAGGLLLSLLFG--ISYVTGILIGALIVALYTFLGGLRAVVWTDFIQGLI 188 (493)
T ss_pred HHHHHHHHHHHHHhhhhcC--CCHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHH
Confidence 5555567788877888888 88888887766655554444322 234445544443
No 23
>PRK10483 tryptophan permease; Provisional
Probab=98.08 E-value=0.013 Score=62.78 Aligned_cols=155 Identities=14% Similarity=0.129 Sum_probs=89.3
Q ss_pred HhhchHHHHHHhhcCCCchhhh-hhHHHHHhHHHHHHHHHHHH---HHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHH
Q 010382 58 LFTGPGFLMSIAFLDPGNLEGD-LQSGAIAGYSLLWLLLWATA---VGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (512)
Q Consensus 58 ~~lGPG~l~s~a~~dpG~i~t~-~~AGA~~Gy~LLWvllla~~---~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~ 133 (512)
+.+|=-++++...+|+|=+.-- ..+|+-|.++++-.++.-.. -++.+-|..-|.. -|.++...-|+..||+.++
T Consensus 12 ~~~g~~~iIaGT~IGaGMLaLP~~~a~~GF~~s~~~l~~~W~~M~~taLlllEv~l~~~--~g~~~~tma~~~LG~~g~~ 89 (414)
T PRK10483 12 SLLGGVVIIGGTIIGAGMFSLPVVMSGAWFFWSMAALIFTWFCMLHSGLMILEANLNYR--IGSSFDTITKDLLGKGWNV 89 (414)
T ss_pred cHHHHHHHHHHchHhHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC--CCCCHHHHHHHHcChHHHH
Confidence 3578888888888998877542 33444444443332222222 2334666666654 4678899999999997776
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH-HH--ccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 010382 134 VLWVMAELALIGSDIQEVIGSAIAIK-IL--SNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 210 (512)
Q Consensus 134 ~l~i~~~la~i~~di~eviG~aial~-lL--~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~ 210 (512)
+-|+.......+...+=+.|.+--++ .+ .+..+|.+.+.++..+..-.+++. |.|.+||+..+++..|.++|+.
T Consensus 90 i~~~s~lfl~Y~Ll~AYisg~g~il~~~l~~~~~~i~~~~~~llF~~~~~~iv~~---gt~~vd~~n~~l~~~~i~~f~~ 166 (414)
T PRK10483 90 VNGISIAFVLYILTYAYISASGSILHHTFAEMSLNVPARAAGFGFALLVAFVVWL---STKAVSRMTAIVLGAKVITFFL 166 (414)
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHh---hhhHHHHHHHHHHHHHHHHHHH
Confidence 65553322111111111222222222 22 233468888777665543333343 3488999999999999888887
Q ss_pred hhheecC
Q 010382 211 MFGETKP 217 (512)
Q Consensus 211 ~~~~~~P 217 (512)
.....-|
T Consensus 167 ~~~~l~~ 173 (414)
T PRK10483 167 TFGSLLG 173 (414)
T ss_pred HHHHHHh
Confidence 6555434
No 24
>PRK10249 phenylalanine transporter; Provisional
Probab=98.07 E-value=0.029 Score=60.83 Aligned_cols=115 Identities=15% Similarity=0.215 Sum_probs=55.7
Q ss_pred CccHHHHHHhhchHHHHHHh-hcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCC
Q 010382 50 PFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128 (512)
Q Consensus 50 ~~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg 128 (512)
..+.++... ++=|-+++.+ ++.||......-.++-.+|-+ .-++....++.+.|++.|+=. +| +.....++.+|
T Consensus 22 ~l~~~~~~~-i~ig~~IGsGif~~~g~~~~~aGp~~~l~~li--~~~~~~~~~~~~aEl~~~~P~-~G-g~~~y~~~~~g 96 (458)
T PRK10249 22 GLHNRHIQL-IALGGAIGTGLFLGIGPAIQMAGPAVLLGYGV--AGIIAFLIMRQLGEMVVEEPV-SG-SFAHFAYKYWG 96 (458)
T ss_pred cCcHhHhhh-hhhhcccchhHHHHHHHHHHhcCcHHHHHHHH--HHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhC
Confidence 344455332 3333333333 456666554322222222211 223444556667777777655 45 67788899999
Q ss_pred chHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHH
Q 010382 129 SWARMVL-WVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSG 171 (512)
Q Consensus 129 ~~~~~~l-~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~g 171 (512)
++..+.. |.. .+........|..+.+.-++.+++. .|.|..
T Consensus 97 ~~~gf~~gw~~-~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~ 138 (458)
T PRK10249 97 PFAGFLSGWNY-WVMFVLVGMAELTAAGIYMQYWFPD-VPTWIW 138 (458)
T ss_pred hHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHcCCc-CcHHHH
Confidence 8766543 322 1122222334554444444545442 465543
No 25
>TIGR03648 Na_symport_lg probable sodium:solute symporter, VC_2705 subfamily. This family belongs to a larger family of transporters of the sodium:solute symporter superfamily, TC 2.A.21. Members of this strictly bacterial protein subfamily are found almost invariably immediately downstream from a member of family TIGR03647. Occasionally, the two genes are fused.
Probab=98.07 E-value=0.036 Score=61.72 Aligned_cols=119 Identities=18% Similarity=0.218 Sum_probs=81.5
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHH----HHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCc-hHHHHHHH
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLW----ATAVGLLVQLLSARLGVATGRHLAELCREEYPS-WARMVLWV 137 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvlll----a~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~-~~~~~l~i 137 (512)
|+-+.+++............+.++||+-+|..+- ..++.+++-..--|.|. .+..|..++||++ ..++...+
T Consensus 40 ~~s~~At~~Sa~tflG~~g~~y~~G~~~~~~~~g~~~~~~~~~~~~~p~~rr~~~---~T~~e~l~~Rf~s~~~~~~~~i 116 (552)
T TIGR03648 40 GMATAADWMSAASFISMAGLIAFLGYDGLAYLMGWTGGYVLLALLLAPYLRKFGK---YTVPDFIGDRYYSNTARLVAVI 116 (552)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHCCC---ccHHHHHHHHhCCCceehhHHH
Confidence 4445666788888888888888899987776531 12244555555556654 4899999999985 45555444
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHH
Q 010382 138 MAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLE 186 (512)
Q Consensus 138 ~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~ 186 (512)
...+..+.....++.|.+..++.++| +|.+.++++.++.+.+...++
T Consensus 117 ~~~~~~~~~l~~ql~~~~~~l~~~~g--i~~~~~iii~~~i~~iYt~~G 163 (552)
T TIGR03648 117 CAIFISFTYVAGQMRGVGVVFSRFLE--VDFETGVFIGMAIVFFYAVLG 163 (552)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHHHHhh
Confidence 44444455555667788888999988 899999988887665554444
No 26
>TIGR00837 araaP aromatic amino acid transport protein. aromatic amino acid transporters and includes the tyrosine permease, TyrP, of E. coli, and the tryptophan transporters TnaB and Mtr of E. coli.
Probab=98.00 E-value=0.01 Score=62.48 Aligned_cols=72 Identities=17% Similarity=0.020 Sum_probs=40.6
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhh
Q 010382 319 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVF 393 (512)
Q Consensus 319 a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~v~~gfl~~~~~~~~~~~~~~~~aivpal~va~~~ 393 (512)
..+.++..+|.+ +...+..++...|-.+|.+...++..-..++.++++.++.. |.....+..+|.++++.+.
T Consensus 255 l~~~~~~~~~~~--~~~~~v~~~~~~al~tS~~g~~l~~~d~l~~~~~~~~~~~~-~~~~~~~~~~~pl~~a~~~ 326 (381)
T TIGR00837 255 LVNALQGVLKSS--AIELALELFSNFALASSFLGVTLGLFDYLADLFKFDDSKKG-RFKTGLLTFLPPLVFALFY 326 (381)
T ss_pred HHHHHHHhccch--HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccCC-CchhhhhhHHhHHHHHHHh
Confidence 345666667653 45666677777777777776666533234444455433222 3344455567777776554
No 27
>PF01235 Na_Ala_symp: Sodium:alanine symporter family; InterPro: IPR001463 Sodium symporters can be divided by sequence and functional similarity into various groups. One such group is the sodium/alanine symporter family, the members of which transport alanine in association with sodium ions. These transporters are believed to possess 8 transmembrane (TM) helices [, ], forming a channel or pore through the cytoplasmic membrane, the interior face being hydrophilic to allow the passage of alanine molecules and sodium ions []. This family is restricted to the bacteria and archaea, examples are the alanine carrier protein from the Bacillus PS3 (Thermophilic bacterium PS-3); the D-alanine/glycine permease from Pseudoalteromonas haloplanktis (Alteromonas haloplanktis); and the hypothetical protein yaaJ from Escherichia coli.; GO: 0005283 sodium:amino acid symporter activity, 0006814 sodium ion transport, 0016020 membrane
Probab=97.98 E-value=0.0064 Score=65.10 Aligned_cols=280 Identities=15% Similarity=0.176 Sum_probs=144.2
Q ss_pred HhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCC---------HHHHHHhhCCc-hHHHHHHH
Q 010382 68 IAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRH---------LAELCREEYPS-WARMVLWV 137 (512)
Q Consensus 68 ~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~---------L~e~~r~~yg~-~~~~~l~i 137 (512)
++-+|+|||+.-+.|=+.=|-.-+..+.++.+++....+.-.-+++..++. .+--+++..++ |.....-+
T Consensus 30 a~~vG~GNI~GVa~AI~~GGPGAiFWMWi~a~~Gmatk~~E~~La~~yR~~~~~G~~~GGP~yyi~~gl~~k~la~~fai 109 (416)
T PF01235_consen 30 AGTVGTGNIAGVATAIAIGGPGAIFWMWISALLGMATKYAEVTLAQKYREKDEDGEYRGGPMYYIEKGLGSKWLAILFAI 109 (416)
T ss_pred HhccCcchHHHHHHHHHhhchhHHHHHHHHHHHHHHHHHHHHHHHHHheEECCCCCEeecHHHHHHHHhccchHHHHHHH
Confidence 456999999988888777788777777788888888887777777775542 55566666654 43332212
Q ss_pred HHHHHH-HHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhhee-
Q 010382 138 MAELAL-IGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGET- 215 (512)
Q Consensus 138 ~~~la~-i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~~~- 215 (512)
....+. .+..+.+.--++.+++--++ +|.|...++.++.+. +..+ .|.|++-++...++=+|.+.|+...+..
T Consensus 110 ~~~~~~~~~~~~~Q~nsi~~~~~~~f~--i~~~~~gi~l~~l~~-~vi~--GGikrI~~v~~~lVP~Ma~~Yi~~~l~ii 184 (416)
T PF01235_consen 110 FLIIAFGIGFNMVQANSIADALSSAFG--IPPWITGIILAILVA-LVIF--GGIKRIAKVSEKLVPFMAILYILGGLIII 184 (416)
T ss_pred HHHHHHHhhhhHHHHHHHHHHHHhhcc--ccHHHHHHHHHHHHH-HHHH--cchhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 11112222223445555566 777665444443322 2233 3568888888888888888887664433
Q ss_pred --c-CChhh----hhhcccccCCChhHHHHHHHHHcccchhHHHHH-H-HHHhhhhccCcc--------chhhhHHHHhH
Q 010382 216 --K-PSGSE----LLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFL-H-SALVQSRDIDNN--------KKGRVQEALRY 278 (512)
Q Consensus 216 --~-P~~~~----v~~G~~vP~~~~~~l~~~valvGatImP~n~fl-h-S~lvq~r~~~~~--------~~~~~~~~~~~ 278 (512)
+ ++.++ +.++-|-|+- ..-|.+|++++--.-+- . .-...|.+.... .+..+|+.+ .
T Consensus 185 ~~n~~~ip~~~~~If~~AF~~~a------a~GG~~G~~i~~ai~~Gv~Rg~fSNEAG~Gsa~~a~a~a~~~hP~~QGl-~ 257 (416)
T PF01235_consen 185 IINIDQIPAAFSLIFSSAFTPKA------AFGGFAGSTIMMAIRQGVARGLFSNEAGLGSAPIAHAAAETDHPVRQGL-V 257 (416)
T ss_pred HhhhhhHHHHHHHHHHHHcCCcc------chhhHHHHHHHHHHHHhhhhhhccCCCCCChhHHHHHHhcCCCcHHHee-e
Confidence 2 23333 3333333321 22355666654221110 0 000011111100 001111111 1
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhccCCcccccccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHH
Q 010382 279 YSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 358 (512)
Q Consensus 279 ~~~d~~~~l~vs~lI~~~i~~v~A~~l~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~ 358 (512)
.-++..+--++.+-++..++.+.. .+..+. +..+.+-..++++..+|+ +..++..+.++.-++||.++..+-++
T Consensus 258 ~~~~vFiDTiiVCt~TalvIl~tG--~~~~~~-~~~g~~l~~~Af~~~~g~---~g~~~v~i~l~lFafTTilg~~~yge 331 (416)
T PF01235_consen 258 QMFEVFIDTIIVCTITALVILVTG--VWSWGS-GLEGAALTQAAFSTVLGS---WGPYFVAIALFLFAFTTILGWYYYGE 331 (416)
T ss_pred eeehHhHHHHHHHHHHHHHhhccC--CCCCCC-cchHHHHHHHHHHHhhhh---hHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 111222211111111222222211 111110 111122245778888997 89999999999999999999888777
Q ss_pred HHHhhhc
Q 010382 359 FIMGGFL 365 (512)
Q Consensus 359 ~v~~gfl 365 (512)
...+-..
T Consensus 332 ~~~~yl~ 338 (416)
T PF01235_consen 332 KCAEYLF 338 (416)
T ss_pred HHHHHHc
Confidence 6666655
No 28
>PRK11049 D-alanine/D-serine/glycine permease; Provisional
Probab=97.88 E-value=0.065 Score=58.31 Aligned_cols=62 Identities=15% Similarity=0.120 Sum_probs=31.1
Q ss_pred hcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHH
Q 010382 70 FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVL 135 (512)
Q Consensus 70 ~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l 135 (512)
+..||......-.++.++|-+..++. ......+-|++...+. .| +..+..++.||+...+..
T Consensus 41 f~~~g~~~~~aGp~~i~~~~i~~i~~--~~~~~s~aEl~s~~~~-~~-~~~~ya~~~~g~~~gf~~ 102 (469)
T PRK11049 41 FMGSGKTISLAGPSIIFVYMIIGFML--FFVMRAMGELLLSNLE-YK-SFSDFASDLLGPWAGYFT 102 (469)
T ss_pred HHHhhHHHhhcCcHHHHHHHHHHHHH--HHHHHHHHHHHHhcCC-CC-cHHHHHHHHhCcHHHHHH
Confidence 35566555443222333333333322 2233344566553222 33 567788999998766543
No 29
>TIGR02358 thia_cytX probable hydroxymethylpyrimidine transporter CytX. On the basis of a phylogenomic study of thiamine biosythetic, salvage, and transporter genes and a highly conserved RNA element THI, this protein family has been identified as a probable transporter of hydroxymethylpyrimidine (HMP), the phosphorylated (by ThiD) form of which gets joined (by ThiE) to hydroxyethylthiazole phosphate to make thiamine phosphate.
Probab=97.88 E-value=0.039 Score=58.70 Aligned_cols=47 Identities=19% Similarity=0.169 Sum_probs=41.2
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 88 YSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 88 y~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
.+-+..+++++++.....-+.++.|.-||.+-.-..|..||++.+.+
T Consensus 29 ~~ai~aiilG~~i~~~~~~l~~~~G~~~Gl~~~v~sR~~FG~~Gs~~ 75 (386)
T TIGR02358 29 TRGLLAILLGHLVGVLLLSAAGVIGADTGLSAMGSLKLSLGSKGSVL 75 (386)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhcccCcCHHHHHHHHHccchhhH
Confidence 56677888889999999999999999999999999999999876554
No 30
>PRK11387 S-methylmethionine transporter; Provisional
Probab=97.87 E-value=0.068 Score=58.16 Aligned_cols=79 Identities=15% Similarity=0.141 Sum_probs=41.4
Q ss_pred ccHHHHHHhhchHHHHHHh-hcCCCchhhhhh-HHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCC
Q 010382 51 FSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQ-SGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128 (512)
Q Consensus 51 ~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~-AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg 128 (512)
.+.++... +|=|-++..+ +..||......- +|.-++|-+.-+ +.....+.+-|++.++=. +| +.-+-.++.+|
T Consensus 16 L~~~~~~~-l~ig~~IG~Gif~~~g~~~~~~G~~~~~l~~~i~~~--~~~~~~~~~aELas~~P~-aG-G~y~y~~~~~g 90 (471)
T PRK11387 16 MKVRHLVM-LSLGGVIGTGLFFNTGYIISTTGAAGTLLAYLIGAL--VVYLVMQCLGELSVAMPE-TG-AFHVYAARYLG 90 (471)
T ss_pred CcHHHHHH-HHHHhhhhhHHHHHHHHHHHHhCcHHHHHHHHHHHH--HHHHHHHHHHHHHHHcCC-CC-CHHHHHHHhcC
Confidence 34444332 3444444333 456666554433 233344333222 333344555788888765 33 47778888899
Q ss_pred chHHHH
Q 010382 129 SWARMV 134 (512)
Q Consensus 129 ~~~~~~ 134 (512)
+...+.
T Consensus 91 ~~~gf~ 96 (471)
T PRK11387 91 PATGYT 96 (471)
T ss_pred hHHHHH
Confidence 876543
No 31
>TIGR00800 ncs1 NCS1 nucleoside transporter family. The NCS1 family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.
Probab=97.84 E-value=0.055 Score=58.49 Aligned_cols=47 Identities=15% Similarity=0.336 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 88 YSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 88 y~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
++-++.+++++++..++-.+.++.|.-||.+-....|..||++...+
T Consensus 47 ~~ailai~lG~~i~~~~~~l~~~~G~r~Gl~~~v~sR~~FG~~Gs~~ 93 (442)
T TIGR00800 47 WQSVIAIILGNLLGGIFVALNSRAGAKYGLPFPVLSRASFGIYGSLL 93 (442)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhhhHHHhCCCcchhhhhhhhhhHhHH
Confidence 34567888889999999999999999999999999999999876554
No 32
>PRK10238 aromatic amino acid transporter; Provisional
Probab=97.76 E-value=0.096 Score=56.79 Aligned_cols=146 Identities=14% Similarity=0.122 Sum_probs=70.8
Q ss_pred CCCccHHHHHHhhchHHHHHHh-hcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhh
Q 010382 48 APPFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREE 126 (512)
Q Consensus 48 ~~~~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~ 126 (512)
+++.+.|+... +|=|=.+..+ ++.||......-.++-++|- ..-+.....++-+-|++.|+=. +| +..+-.++.
T Consensus 11 ~r~L~~~~~~~-i~ig~~IGsGif~~~g~~~~~~Gp~~i~~~~--i~gi~~~~v~~s~aEl~s~~P~-aG-g~y~~~~~~ 85 (456)
T PRK10238 11 KRGLKNRHIQL-IALGGAIGTGLFLGSASVIQSAGPGIILGYA--IAGFIAFLIMRQLGEMVVEEPV-AG-SFSHFAYKY 85 (456)
T ss_pred hccCcHHHHHH-HHhhccccchHHHhhHHHHHhcCcHHHHHHH--HHHHHHHHHHHHHHHHHHhcCC-CC-CHHHHHHHH
Confidence 34556666543 3333333332 46677666554333444332 2222344455556678777765 44 677777888
Q ss_pred CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHH
Q 010382 127 YPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAV 199 (512)
Q Consensus 127 yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~ 199 (512)
+|++..+...-...+..+.....|..+.+.-++..++. .|.|....+..+.+..+-..+..-+.++|.++.+
T Consensus 86 ~g~~~gf~~Gw~~~~~~~~~~~~~~~~~~~~~~~~~p~-~~~~~~~~i~~~~~~~lN~~gv~~~~~~~~~~~~ 157 (456)
T PRK10238 86 WGSFAGFASGWNYWVLYVLVAMAELTAVGKYIQFWYPE-IPTWVSAAVFFVVINAINLTNVKVFGEMEFWFAI 157 (456)
T ss_pred cCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCc-CcHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHH
Confidence 99977665322221222222234444444445555543 5667654444332222212221123577776544
No 33
>PRK11017 codB cytosine permease; Provisional
Probab=97.75 E-value=0.092 Score=56.22 Aligned_cols=116 Identities=14% Similarity=0.110 Sum_probs=67.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHccCCch
Q 010382 89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWVM-AELALIGSDIQEVIGSAIAIKILSNGILP 167 (512)
Q Consensus 89 ~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l~i~-~~la~i~~di~eviG~aial~lL~gg~ip 167 (512)
+-++.+++++++..++--+.++.|.-||.+-...+|..||++-..+..+. ...++.=..++..++ +.+++-++| .+
T Consensus 43 ~ai~aiilG~~i~~~~~~l~~~~G~k~G~~~~v~sR~~FG~~Gs~l~~~~~~i~~igW~av~~~~~-~~~l~~~~~--~~ 119 (404)
T PRK11017 43 DFLLAVLIGNLLLGIYTAALGYIGAKTGLSTHLLARFSFGEKGSWLPSLLLGFTQVGWFGVGVAMF-AIPVVKATG--LD 119 (404)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhccCcCHHHHHHHHhchhHHHHHHHHHHHHHHhHHHHHHHHH-HHHHHHHhC--CC
Confidence 44677888888889999999999999999999999999998655443222 111111112233332 233444556 55
Q ss_pred hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 010382 168 LWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 210 (512)
Q Consensus 168 l~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~ 210 (512)
.+.+.++..+......++ |+|++|++.++..-.+.+.+++
T Consensus 120 ~~~~~~i~~~l~~~~~~~---G~~~i~~~~~~~~p~~~~~~~~ 159 (404)
T PRK11017 120 INLLIVLSGLLMTVTAYF---GISALTILSRIAVPAIALLGGY 159 (404)
T ss_pred HHHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHHHHHHHH
Confidence 555555444433333333 3455555555544444444433
No 34
>COG0733 Na+-dependent transporters of the SNF family [General function prediction only]
Probab=97.57 E-value=0.17 Score=54.38 Aligned_cols=145 Identities=22% Similarity=0.266 Sum_probs=76.0
Q ss_pred hcchhH-HHHHHHHHHHHHHHHHHHhhhee--cCChhhhhhcccccCCC----hhHHHHHHHHH------cccchhHHHH
Q 010382 187 NYGVRK-LEAVFAVLIATMALSFAWMFGET--KPSGSELLIGILVPKLS----SKTIQQAVGVV------GCIIMPHNVF 253 (512)
Q Consensus 187 ~yg~r~-lE~~~~~li~~m~l~F~~~~~~~--~P~~~~v~~G~~vP~~~----~~~l~~~valv------GatImP~n~f 253 (512)
+.|.++ +||..++++=.+.++|+..++.+ .|.-.|=.+=.+.|..+ .+.+..+.|-. |..+ ++-
T Consensus 160 ~~GV~~GIEk~~kimMP~Lfvl~i~Lvi~~~tLpGA~~G~~f~l~PD~s~l~~~~v~~~AlGQ~FFsLSlG~g~---mit 236 (439)
T COG0733 160 SRGVKKGIEKANKIMMPLLFVLFIILVIRAVTLPGAMEGLKFLFKPDFSKLTDPKVWLAALGQAFFSLSLGFGI---MIT 236 (439)
T ss_pred HHhHHhhHHHHHHHHHHHHHHHHHHHHHHHHcCccHHHHHHHHhcCCHHHcCchhhHHHHHHHHHHHHHHHHHH---HHH
Confidence 345555 99999999888888888776644 56544444444667643 22222232221 2212 333
Q ss_pred HHHHHhhhhccCccchhhhHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHhhhccCCccccccc-----chHHHHHHHhhc
Q 010382 254 LHSALVQSRDIDNNKKGRVQEALRYYSIESTLALVVSFMINLFVTTVFAKGFYGTEQANNIGL-----VNAGQYLQEKYG 328 (512)
Q Consensus 254 lhS~lvq~r~~~~~~~~~~~~~~~~~~~d~~~~l~vs~lI~~~i~~v~A~~l~~~~~~~~~~l-----~~a~~~L~~~~G 328 (512)
+-|++-|+ .| ..+.+..-...|+.++.+..+.|--+.... +.+..+..++ .++-+.+- +|
T Consensus 237 YsSYL~k~--~~-----l~~sa~~v~~~n~~~s~lAGl~Ifpa~f~~------g~~~~~GpgL~Fi~LP~if~~mp--~G 301 (439)
T COG0733 237 YSSYLSKK--SD-----LVSSALSIVLLNTLISLLAGLVIFPALFSF------GADASQGPGLVFIVLPAVFNQMP--LG 301 (439)
T ss_pred HHhhcCcc--cc-----hhhhHHHHHHHHHHHHHHHHHHHHHHHHHh------ccCCCCCCeeehhHHHHHHHhCc--hh
Confidence 45554322 22 234556666677777666654433322222 2111112222 22222222 56
Q ss_pred CChhHHHHHHHHHHHHhhhhhHHh
Q 010382 329 GGLFPILYIWGIGLLAAGQSSTIT 352 (512)
Q Consensus 329 ~~~~~a~~if~igllaAg~sStit 352 (512)
. ....+|-+.++.|+.||.++
T Consensus 302 ~---~~~~lFFl~l~fAalTS~iS 322 (439)
T COG0733 302 T---LFGILFFLLLLFAALTSAIS 322 (439)
T ss_pred H---HHHHHHHHHHHHHHHHHHHH
Confidence 5 55568888888888888764
No 35
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=97.57 E-value=0.057 Score=55.79 Aligned_cols=119 Identities=16% Similarity=0.240 Sum_probs=80.8
Q ss_pred HHHhHHHHHHHHHHHHHHHHHHHHhhHhhhh-cCCCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc
Q 010382 84 AIAGYSLLWLLLWATAVGLLVQLLSARLGVA-TGRHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILS 162 (512)
Q Consensus 84 A~~Gy~LLWvllla~~~~~~~Q~lsaRlgvv-TG~~L~e~~r~~yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL~ 162 (512)
..||+.=.|-+.+++++-.++=.....+|-. .-+|..|..+.-.|++.....=+......++...-...|++..++-.+
T Consensus 32 ~~~G~~s~~gIivs~vlf~~~g~vim~ig~~f~a~~y~~~~~~v~~~~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~ 111 (349)
T COG3949 32 GKYGVYSILGIILSTVLFTLSGAVIMTIGKKFNATSYREILKYVSGPKFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMF 111 (349)
T ss_pred HHhhhhhhHHHHHHHHHHHHHHHHHHHHHHHhcccchHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHh
Confidence 4688888899999988887777777777765 445788888888777655443233333444444445567665677778
Q ss_pred cCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 010382 163 NGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL 206 (512)
Q Consensus 163 gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l 206 (512)
| +|.|+|.++......+.++++| .++++++....+=++..
T Consensus 112 ~--lP~wiGali~i~~v~i~lfl~~--vegi~tvn~iI~P~LIi 151 (349)
T COG3949 112 G--LPYWIGALIIILLVLILLFLGR--VEGIITVNGIITPFLII 151 (349)
T ss_pred C--ccHHHHHHHHHHHHHHHHHHhc--ccceeeeheeHHHHHHH
Confidence 8 9999997777665566667665 37777776664444433
No 36
>PRK10484 putative transporter; Provisional
Probab=97.51 E-value=0.24 Score=54.75 Aligned_cols=72 Identities=15% Similarity=0.111 Sum_probs=43.8
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHH-HHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVG-LLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~-~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
|+-+.+++...++.......+.++|+..+|......+.. +..-..+.|+--.-=.+..|..++||++..+..
T Consensus 46 ~~sl~AT~~Sa~tflG~~g~~y~~G~~~~~~~~~~~~~~~~~~~~~~p~~~r~~~~T~~e~l~~Ryg~~~~~~ 118 (523)
T PRK10484 46 AGSLLLTNLSTEQLVGLNGQAYASGMSVMAWEVTAAIALIILALIFLPRYLKSGITTIPDFLEERYDKTTRRI 118 (523)
T ss_pred HHHHHHHHhhHHHHhcchHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccHHHHHHHhcCchhHHH
Confidence 344456678888999998888899988653322222111 111123444432222479999999999865543
No 37
>PF02133 Transp_cyt_pur: Permease for cytosine/purines, uracil, thiamine, allantoin; InterPro: IPR001248 The Nucleobase Cation Symporter-1 (NCS1) family consists of bacterial and yeast transporters for nucleobases including purines and pyrimidines. Members of this family possess twelve putative transmembrane a-helical spanners (TMSs). At least some of them have been shown to function in uptake by substrate:H+ symport mechanism.; GO: 0015205 nucleobase transmembrane transporter activity, 0015851 nucleobase transport, 0016020 membrane; PDB: 2JLN_A 2JLO_A.
Probab=97.50 E-value=0.0086 Score=64.41 Aligned_cols=46 Identities=17% Similarity=0.242 Sum_probs=36.2
Q ss_pred HHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 89 SLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 89 ~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
+-+..++++++++.+.-...++.|.-||.+-....|..||++.+.+
T Consensus 43 ~ailai~~G~~l~~i~~~~~~~~G~r~Gl~~~v~sR~~FG~~Gs~l 88 (440)
T PF02133_consen 43 QAILAILIGNLLGAILVALMGIIGPRTGLPTMVLSRASFGYRGSKL 88 (440)
T ss_dssp HHHHHHHHHHHHHHHHHHHHTHHHHCC---HHHHTTTTS-TTTTHH
T ss_pred HHHHHHHHHHHHHHHHHHHhcccccccCCCchhcchhccCcchHHH
Confidence 4567888899999999999999999999999999999999865544
No 38
>TIGR00796 livcs branched-chain amino acid uptake carrier. transmembrane helical spanners.
Probab=97.39 E-value=0.26 Score=52.39 Aligned_cols=68 Identities=18% Similarity=0.085 Sum_probs=41.7
Q ss_pred HHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhh-cCCCHHHHHHhhCCchHHHHHH
Q 010382 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVA-TGRHLAELCREEYPSWARMVLW 136 (512)
Q Consensus 67 s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvv-TG~~L~e~~r~~yg~~~~~~l~ 136 (512)
=.-+.|+||+..-..-|.+.|.+..+.++--.+-+...=-++ =+.+. +| +-.+..+++|||+....+.
T Consensus 5 FamffGAGNlIfPp~lG~~aG~~~~~a~lgf~ltgV~lpllg-l~av~~~g-G~~~~l~~~~g~~f~~lf~ 73 (378)
T TIGR00796 5 FALFFGAGNIIFPPMLGLAAGEHVWTAALGFLLTGVGLPLLG-LIALALVG-GGYDSLSARIGKVFGILFT 73 (378)
T ss_pred HHHHHhhhHHhhhHHHHHHhCccHHHHHHHHHHHHHHHHHHH-HheeeecC-CCHHHHHHHhChHHHHHHH
Confidence 345899999999988888888765554443222222222221 12332 44 5667778889998777653
No 39
>COG0814 SdaC Amino acid permeases [Amino acid transport and metabolism]
Probab=97.33 E-value=0.34 Score=52.19 Aligned_cols=147 Identities=17% Similarity=0.141 Sum_probs=80.7
Q ss_pred HHHHHhhcCCCchhhhhhHHHHHhHHHHH-HHHHHHHHHHHHHHHhhHhhhhcCC---CHHHHHHhhCCchHHHHHHHHH
Q 010382 64 FLMSIAFLDPGNLEGDLQSGAIAGYSLLW-LLLWATAVGLLVQLLSARLGVATGR---HLAELCREEYPSWARMVLWVMA 139 (512)
Q Consensus 64 ~l~s~a~~dpG~i~t~~~AGA~~Gy~LLW-vllla~~~~~~~Q~lsaRlgvvTG~---~L~e~~r~~yg~~~~~~l~i~~ 139 (512)
+++.-..+|+|=+.-=.+++ ..||--.+ .++++.++.+..+++-.|.-.-+++ +..+..++++||+.++...+..
T Consensus 16 l~l~gT~IGAGvL~lP~a~~-~~G~~~~l~~l~i~~~~t~~s~~~l~~~~~~~~~~~~~~~~~~~~~~G~~~~~li~~s~ 94 (415)
T COG0814 16 LILAGTAIGAGVLFLPVAFG-GGGFWPGLLLLIIAWPLTYLSLLLLLEALLSSPNGKASITSLVEDYLGKKGGILIGLSY 94 (415)
T ss_pred HHHHccccccchhhhhHHhc-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCcccHHHHHHHHhCcchHHHHHHHH
Confidence 34444567777665444432 33332222 3345555666667666666655444 7899999999998887755443
Q ss_pred HHHH----------HHHHHHHHHHHHHHHHHHccCC-chhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHH
Q 010382 140 ELAL----------IGSDIQEVIGSAIAIKILSNGI-LPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSF 208 (512)
Q Consensus 140 ~la~----------i~~di~eviG~aial~lL~gg~-ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F 208 (512)
.+.. .+.+++++++. .++.. .+...+.++.......+.+.++ +...|....++..+.+++
T Consensus 95 ~~~~~~~~~aY~~~~g~~l~~~~~~------~~~~~~~~r~~~~lif~~~~~~l~~~~~---~~~lk~ts~l~~~~v~~~ 165 (415)
T COG0814 95 FFALYGLLVAYIVGIGNLLASFLGN------QFGLNPLPRKLGSLIFALVLAFLSWLGT---LAVLKITSLLVFGKVIYL 165 (415)
T ss_pred HHHHHHHHHHHHhcchhHHHHHHHh------hcccCCcchHHHHHHHHHHHHHHHHhch---hHHHHHHHHHHHHHHHHH
Confidence 3322 22333333222 12222 3444444433332222334433 667777777777777777
Q ss_pred HHhhheecCChh
Q 010382 209 AWMFGETKPSGS 220 (512)
Q Consensus 209 ~~~~~~~~P~~~ 220 (512)
+...+.--|.|.
T Consensus 166 ~~l~~~~~~~~~ 177 (415)
T COG0814 166 VLLVVYLIPHWN 177 (415)
T ss_pred HHHHHHHhcccC
Confidence 776666667764
No 40
>PRK15049 L-asparagine permease; Provisional
Probab=97.31 E-value=0.4 Score=52.73 Aligned_cols=80 Identities=16% Similarity=0.087 Sum_probs=42.4
Q ss_pred CccHHHHHHhhchHHHHHHh-hcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCC
Q 010382 50 PFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128 (512)
Q Consensus 50 ~~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg 128 (512)
+.+.++... +|=|-+++.+ +..||......-.++-.+| +..-+.....+..+-|++.++=. +| +...-.++.+|
T Consensus 29 ~L~~~~~~~-i~~G~~IGsGiF~~~g~~~~~aGp~~il~~--li~~i~~~~v~~slaELas~~P~-aG-g~y~y~~~~~G 103 (499)
T PRK15049 29 AMGNRQVQM-IAIGGAIGTGLFLGAGARLQMAGPALALVY--LICGLFSFFILRALGELVLHRPS-SG-SFVSYAREFLG 103 (499)
T ss_pred cCCHhHhHH-HhhhccccchHHHhhHHHHHhcCCHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHhC
Confidence 344444332 3333333333 3566665544333333332 22333444555666788777664 44 67778888889
Q ss_pred chHHHH
Q 010382 129 SWARMV 134 (512)
Q Consensus 129 ~~~~~~ 134 (512)
++..+.
T Consensus 104 ~~~gf~ 109 (499)
T PRK15049 104 EKAAYV 109 (499)
T ss_pred cHhHHH
Confidence 876544
No 41
>COG1113 AnsP Gamma-aminobutyrate permease and related permeases [Amino acid transport and metabolism]
Probab=97.26 E-value=0.41 Score=51.66 Aligned_cols=125 Identities=20% Similarity=0.282 Sum_probs=78.4
Q ss_pred cCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhh--cCCCHHHHHHhhCCchHHHHH-HHHHHHHHHHHH
Q 010382 71 LDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMVL-WVMAELALIGSD 147 (512)
Q Consensus 71 ~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvv--TG~~L~e~~r~~yg~~~~~~l-~i~~~la~i~~d 147 (512)
+|.|=...+.++=+..|-+.+-.-+++-++.+++.+.-+-+-+. +-.+..+.+||.+|+|+.+.. |..-.. -+...
T Consensus 29 IGtGLFlGSg~~I~~AGPSvlLaY~I~G~~~f~iMRaLGEm~~~~p~~gSF~~~a~~~lG~~Agf~tgW~YW~~-wv~v~ 107 (462)
T COG1113 29 IGTGLFLGSGSAIAMAGPSVLLAYLIAGIFVFLIMRALGEMLVANPVSGSFSDYARKYLGPWAGFLTGWTYWFF-WVLVG 107 (462)
T ss_pred hhhhhhcccchhhhhhCcHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCcHHHHHHHHhcchHHHHHHHHHHHH-HHHHH
Confidence 44444444444445566677777777777777777777777666 344789999999999886553 322111 12233
Q ss_pred HHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH--HHhcchhHHHHHHHH
Q 010382 148 IQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLF--LENYGVRKLEAVFAV 199 (512)
Q Consensus 148 i~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~--l~~yg~r~lE~~~~~ 199 (512)
++|+.+.+.=++.-+++ +|.|..+++..+....+=. ...| ..+|.-+..
T Consensus 108 ~ae~tAi~~y~~~WfP~-vP~Wv~al~~~~l~~~~NL~sVk~F--GE~EfWfAl 158 (462)
T COG1113 108 IAELTAIGIYLQFWFPD-VPQWVFALAAVVLLLAVNLISVKVF--GELEFWFAL 158 (462)
T ss_pred HHHHHHHHHHHHHhcCC-CcHHHHHHHHHHHHHHHHHHHHHHH--HHHHHHHHH
Confidence 45666677777888876 6999988877654333222 2344 577766554
No 42
>TIGR00835 agcS amino acid carrier protein. Members of the AGCS family transport alanine and/or glycine in symport with Na+ and or H+.
Probab=97.25 E-value=0.41 Score=51.64 Aligned_cols=46 Identities=17% Similarity=0.005 Sum_probs=36.4
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHHHHhhhcccc
Q 010382 320 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLR 368 (512)
Q Consensus 320 ~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~v~~gfl~~~ 368 (512)
.++++..+|. |..++..+.++.-++||.++..|-++...+-.++.|
T Consensus 323 ~~af~~~~g~---~g~~~v~i~~~lFaftTii~~~yyge~~~~yl~~~~ 368 (425)
T TIGR00835 323 QQALSYGLGS---FGAVFVAVALFLFAFSTIIGWYYYGEKNAEFLKGNK 368 (425)
T ss_pred HHHHHHHhhh---hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCC
Confidence 3667788887 788999999999999999998887776665554544
No 43
>TIGR00930 2a30 K-Cl cotransporter.
Probab=97.16 E-value=0.93 Score=53.88 Aligned_cols=28 Identities=14% Similarity=0.191 Sum_probs=20.6
Q ss_pred HHHHHHHHHHHhhhhhHHhhhhhHHHHH
Q 010382 334 ILYIWGIGLLAAGQSSTITGTYAGQFIM 361 (512)
Q Consensus 334 a~~if~igllaAg~sStit~t~ag~~v~ 361 (512)
...+..+|.+.+.++|..+..++...++
T Consensus 386 ~~~lI~ig~~~stlss~la~l~~asRvl 413 (953)
T TIGR00930 386 FPPLITAGIFSATLSSALASLVSAPRLF 413 (953)
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3467888999998888887777655444
No 44
>COG4145 PanF Na+/panthothenate symporter [Coenzyme metabolism]
Probab=97.10 E-value=0.5 Score=49.73 Aligned_cols=118 Identities=18% Similarity=0.327 Sum_probs=70.5
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHH-----------HHHHHHHHhhHhhhhcCCCHHHHHHhhCCc-h
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATA-----------VGLLVQLLSARLGVATGRHLAELCREEYPS-W 130 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~-----------~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~-~ 130 (512)
.+..++.|+.+++....- ||.|.|.|-| ++++++ ++=-+-..+-|++.+ ++-|..|+||-. .
T Consensus 47 Amt~~aTYisaSSFigGp--gaayk~Glgw-vlLa~iqvp~~~l~lgvlgkk~~~~ar~~nAl---tI~D~l~~RY~s~f 120 (473)
T COG4145 47 AMTFTATYISASSFIGGP--GAAYKYGLGW-VLLAMIQVPTVWLALGVLGKKFAILAREYNAL---TINDLLFARYQSRF 120 (473)
T ss_pred hhHHHHHHHHHhhhcCCC--cHHHHhchHH-HHHHHHHHHHHHHHHHHhhhHHHHHHHHhCCe---eHHHHHHHHhcchH
Confidence 344556677777776665 4555556777 444432 111222333344433 588889999854 3
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhc
Q 010382 131 ARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENY 188 (512)
Q Consensus 131 ~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~y 188 (512)
..|..-+.....-++....+++|.|=-++-..| +|-..|.++++....+.-+.+.+
T Consensus 121 l~~las~~Lifff~~~m~~qfiGgarLlE~~~g--idY~tgL~ifa~~V~iYt~fGGF 176 (473)
T COG4145 121 LVWLASLSLIFFFVGAMTVQFIGGARLLETALG--IDYTTGLLIFAVSVAIYTAFGGF 176 (473)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHC--CCchhhHHHHHHHHHHHHhhcce
Confidence 333322333334455555678898877887777 89999999998766655555544
No 45
>TIGR00907 2A0304 amino acid permease (GABA permease).
Probab=97.08 E-value=0.64 Score=50.63 Aligned_cols=38 Identities=13% Similarity=0.035 Sum_probs=20.5
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhh----CCchHHHH
Q 010382 95 LWATAVGLLVQLLSARLGVATGRHLAELCREE----YPSWARMV 134 (512)
Q Consensus 95 lla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~----yg~~~~~~ 134 (512)
++..+.++.+-|++.++=.. | +...-.++. +|+...+.
T Consensus 58 i~~l~~~~~~aEl~s~~P~~-G-g~y~~~~~~~g~~~g~~~~f~ 99 (482)
T TIGR00907 58 AGSICIALSLAELSSAYPTS-G-GQYFWSAKLAPPRQMPFASWM 99 (482)
T ss_pred HHHHHHHHHHHHHHhhCCCC-c-cHHHHHHHhcccccccceeHH
Confidence 34445666777888877642 2 344444444 44554444
No 46
>TIGR00910 2A0307_GadC glutamate:gamma-aminobutyrate antiporter. Lowered cutoffs from 1000/500 to 800/300, promoted from subfamily to equivalog, and put into a Genome Property DHH 9/1/2009
Probab=97.04 E-value=0.75 Score=50.76 Aligned_cols=50 Identities=18% Similarity=0.270 Sum_probs=31.5
Q ss_pred HHHhHHHHHHHHHH-----HHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 84 AIAGYSLLWLLLWA-----TAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 84 A~~Gy~LLWvllla-----~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
|.+|++++...+++ .+.++.+.|++++..-.+| +...-.|+-+|++..+.
T Consensus 29 a~~G~~~i~~~i~~~l~~~lp~al~~AELas~~p~~~G-G~y~wv~~a~G~~~Gf~ 83 (507)
T TIGR00910 29 ATSGFHLVFFLLLGGILWFIPVALCAAEMATVDGWEEG-GIFAWVSNTLGERFGFA 83 (507)
T ss_pred HHhhHHHHHHHHHHHHHHHHHHHHHHHHHHcccCCCCC-CeeeehhhccCccHHHH
Confidence 46778875544443 3356677777776542233 67778888888865543
No 47
>TIGR00911 2A0308 L-type amino acid transporter.
Probab=96.71 E-value=1.3 Score=48.51 Aligned_cols=37 Identities=11% Similarity=0.121 Sum_probs=23.9
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 96 la~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
.+.+..+.+-|++.++-. +| +.-.-.++.||++..+.
T Consensus 89 ~~~~~al~~aELas~~P~-sG-G~y~~~~~~~g~~~gf~ 125 (501)
T TIGR00911 89 FSIVGALVYAELGTTIPK-SG-GEYNYILEVFGPLLAFL 125 (501)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-chhhhHHhHhCCHHHHH
Confidence 344556667777776643 22 56677788899876553
No 48
>TIGR00905 2A0302 transporter, basic amino acid/polyamine antiporter (APA) family. This family includes several families of antiporters that, rather commonly, are encoded next to decarboxylases that convert one of the antiporter substrates into the other. This arrangement allows a cycle that can remove proteins from the cytoplasm and thereby protect against acidic conditions.
Probab=96.57 E-value=1.6 Score=47.60 Aligned_cols=38 Identities=16% Similarity=0.044 Sum_probs=25.3
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHH
Q 010382 319 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF 359 (512)
Q Consensus 319 a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~ 359 (512)
..+..+..+|+ +...+..++.+.+.+++..+...++..
T Consensus 270 ~~~~~~~~~g~---~~~~~i~i~~~is~~~~~~~~~~~~sR 307 (473)
T TIGR00905 270 MAAVLEMIVGK---WGAVLISLGLIISVLGSLLSWTMLAAE 307 (473)
T ss_pred HHHHHHHHhCh---HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455677787 676777887777777777666555443
No 49
>PF13520 AA_permease_2: Amino acid permease; PDB: 3NCY_A 3GI8_C 3GIA_A 3GI9_C 3OB6_A 3L1L_A 3LRC_D 3LRB_B 4DJK_A 4DJI_A ....
Probab=96.56 E-value=1.4 Score=46.90 Aligned_cols=37 Identities=11% Similarity=-0.039 Sum_probs=25.1
Q ss_pred HHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHHH
Q 010382 321 QYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFI 360 (512)
Q Consensus 321 ~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~v 360 (512)
...+...|+ +...++.+++..+.+++..+...+....
T Consensus 262 ~~~~~~~~~---~~~~~~~i~~~~~~~~~~~~~~~~~sR~ 298 (426)
T PF13520_consen 262 VLASAVGGS---WLAIIVSIAAILSLFGSINAFIFGASRL 298 (426)
T ss_dssp HHHHHHHCC---THHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hhhcccccc---ccccccccccccccccccchhhcchhhc
Confidence 444555556 7778888888888888877776654443
No 50
>COG1953 FUI1 Cytosine/uracil/thiamine/allantoin permeases [Nucleotide transport and metabolism / Coenzyme metabolism]
Probab=96.52 E-value=1.7 Score=47.52 Aligned_cols=140 Identities=17% Similarity=0.163 Sum_probs=80.5
Q ss_pred hcCCCchhhhhhHHHHHhHHHHH-----HHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHH-HHHHHHHHHH
Q 010382 70 FLDPGNLEGDLQSGAIAGYSLLW-----LLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM-VLWVMAELAL 143 (512)
Q Consensus 70 ~~dpG~i~t~~~AGA~~Gy~LLW-----vllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~-~l~i~~~la~ 143 (512)
.-|.=|+-++..++.-+...|-| .+++++.+.+.+..+.+|-|..+|-+-...+|..||-+.+. ...+-+.+++
T Consensus 51 ~~~~~nv~~~~~aa~~~~lGLS~~qallai~vG~~iv~i~m~Lng~~G~~~gIpFpv~~RaSFGi~Ga~~p~l~R~i~A~ 130 (497)
T COG1953 51 LGMVHNVPTYMLAAGLFELGLSPWQALLAILVGNLIVAIFMVLNGHAGSKYGIPFPVLSRASFGIYGANFPALIRAIVAI 130 (497)
T ss_pred HHhhccHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHhccCcccccCCCchHHHHHHHhhhhhhHHHHHHHHHHH
Confidence 34556666666666665444443 45566777788888999999999999999999999975432 2222233344
Q ss_pred HHHHHHHHHHHHHHHHHHc----cC-----Cch--------hHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHH
Q 010382 144 IGSDIQEVIGSAIAIKILS----NG-----ILP--------LWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMAL 206 (512)
Q Consensus 144 i~~di~eviG~aial~lL~----gg-----~ip--------l~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l 206 (512)
.=..+|..+|. .+++++. |. ..+ -+++-.+.=+....+++.+-+..||+|..-+.++-++.+
T Consensus 131 ~WyGvqty~Gg-~av~llL~~i~~~~~~~~~~~~~lg~tt~~~i~F~ifW~l~~l~~~~g~~~Ir~~~~~a~p~~~~~~~ 209 (497)
T COG1953 131 VWYGVQTYAGG-LAVNLLLGSIFPSLLIPNTLSPLLGLTTLELICFFIFWVLQLLVLFKGMESIRKFETWAGPLVYIAML 209 (497)
T ss_pred HHHHHHHHHhH-HHHHHHHHHhccccccCCccccccCCcHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHhchHHHHHHH
Confidence 33344544443 2333332 21 001 122222222222333334445578888888877777766
Q ss_pred HHHH
Q 010382 207 SFAW 210 (512)
Q Consensus 207 ~F~~ 210 (512)
.+.+
T Consensus 210 gl~I 213 (497)
T COG1953 210 GLAI 213 (497)
T ss_pred HHHH
Confidence 6654
No 51
>COG4147 DhlC Predicted symporter [General function prediction only]
Probab=96.47 E-value=1.8 Score=47.13 Aligned_cols=79 Identities=22% Similarity=0.335 Sum_probs=58.5
Q ss_pred HHhhHhhhhcCCCHHHHHHhhCCc-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHH
Q 010382 106 LLSARLGVATGRHLAELCREEYPS-WARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLF 184 (512)
Q Consensus 106 ~lsaRlgvvTG~~L~e~~r~~yg~-~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~ 184 (512)
..+.|+==.-+-+.+|.+.+||.. ..|+..-+.+.+......++++.|++.-+.+++| +|.+.++.+..+...+...
T Consensus 93 L~A~~LRk~GkyT~aD~~a~Ry~~~~~R~~aa~~ti~vs~~YliaQmvGaG~li~~l~g--v~~~vgv~ig~ilm~~Yvv 170 (529)
T COG4147 93 LIAEYLRKLGKYTFADFIADRYKSNPARLLAAIGTIIVSFLYLIAQMVGAGLLISLLLG--VPYHVGVVIGGILMMVYVV 170 (529)
T ss_pred HHHHHHHhcCCcchHHHHHHHHhcchhhHHHHHHHHHHHHHHHHHHHHhhHHHHHHHhC--CCceeehhhHhHHHHHHHH
Confidence 345555555566899999999965 6777666656666667778889999999999999 8999999888775554444
Q ss_pred HH
Q 010382 185 LE 186 (512)
Q Consensus 185 l~ 186 (512)
++
T Consensus 171 ~G 172 (529)
T COG4147 171 LG 172 (529)
T ss_pred hc
Confidence 44
No 52
>PRK10644 arginine:agmatin antiporter; Provisional
Probab=96.44 E-value=1.8 Score=46.71 Aligned_cols=37 Identities=11% Similarity=0.090 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHH
Q 010382 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (512)
Q Consensus 95 lla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~ 133 (512)
+.+.+..+.+-|++.++=. +| +.-+-.|+.||++..+
T Consensus 51 ~~~l~~al~~aEL~s~~P~-aG-G~y~~~~~~~g~~~gf 87 (445)
T PRK10644 51 IGALGLSMVYAKMSSLDPS-PG-GSYAYARRCFGPFLGY 87 (445)
T ss_pred HHHHHHHHHHHHHHhhCCC-CC-ChhHHHHHHcCchHHH
Confidence 4566677888888888753 34 6777789999997664
No 53
>PRK11021 putative transporter; Provisional
Probab=96.23 E-value=2.1 Score=45.51 Aligned_cols=37 Identities=11% Similarity=0.114 Sum_probs=24.7
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 96 la~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
...+..+.+-|++.|+-. +| +...-.|+.+|+...+.
T Consensus 44 ~~~~~al~~aEl~s~~P~-aG-G~y~y~~~~~G~~~gf~ 80 (410)
T PRK11021 44 LIFPIAIVFARLGRHFPH-AG-GPAHFVGMAFGPRLGRV 80 (410)
T ss_pred HHHHHHHHHHHHHHhCCC-CC-CHHHhHHHHhCchhHHH
Confidence 344556666777777664 34 67778888899865543
No 54
>TIGR00908 2A0305 ethanolamine permease. The three genes used as the seed for this model (from Burkholderia pseudomallei, Pseudomonas aeruginosa and Clostridium acetobutylicum are all adjacent to genes for the catabolism of ethanolamine. Most if not all of the hits to this model have a similar arrangement of genes. This group is a member of the Amino Acid-Polyamine-Organocation (APC) Superfamily.
Probab=96.14 E-value=2.5 Score=45.45 Aligned_cols=37 Identities=16% Similarity=0.254 Sum_probs=27.1
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 96 la~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
...+..+.+-|++.|+-.. | +...-.++.+|++..+.
T Consensus 52 ~~~~~a~~~aEl~s~~P~~-G-g~y~~~~~~~G~~~gf~ 88 (442)
T TIGR00908 52 MYLTFCFSLAELSTMIPTA-G-GGYGFARRAFGPWGGFL 88 (442)
T ss_pred HHHHHHHHHHHHHHHcCCC-C-CHHHHHHHHhCcHHHHH
Confidence 4455677799999998753 3 56778889999976654
No 55
>TIGR01773 GABAperm gamma-aminobutyrate permease. GabP is highly homologous to amino acid permeases from B. subtilis, E. coli, as well as to other members of the amino acid permease family (pfam00324). A member of the APC (amine-polyamine-choline) transporter superfamily, GABA permease possesses a "consensus amphiphatic region" (CAR) found to be evolutionarily conserved within this transport family. This amphiphatic region is located between helix 8 and cytoplasmic loop 8-9, forming a potential channel domain and suggested to play a significant role in ligand recognition and translocation. Unique to GABA permeases, a conserved cysteine residue (CYS-300, E.coli) located at the beginning of the amphiphatic domain, has been determined to be critical for catalytic specificity.
Probab=96.03 E-value=2.8 Score=45.16 Aligned_cols=81 Identities=10% Similarity=0.120 Sum_probs=44.0
Q ss_pred CCccHHHHHHhhchHHHHHHh-hcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhC
Q 010382 49 PPFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEY 127 (512)
Q Consensus 49 ~~~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~y 127 (512)
++.+.++... ++=|-++..+ +..||......-.++-.+ .+..-+.....++.+-|++.|+-. + -+..+..++.+
T Consensus 12 ~~L~~~~~~~-i~ig~~IGsGif~~~g~~~~~~G~~~~i~--~~i~~v~~~~~a~~~aEl~s~~P~-~-Gg~~~~~~~~~ 86 (452)
T TIGR01773 12 NGLKTRHVTM-LSIAGVIGAGLFVGSGSAIASAGPAALLA--YLLAGLLVVFIMRMLGEMAVANPD-T-GSFSTYADDAI 86 (452)
T ss_pred CcCcHHHHHH-HHHhhhhhchHHHhhHHHHHhcCCHHHHH--HHHHHHHHHHHHHHHHHHHHhcCC-C-CCHHHHHHHHh
Confidence 3455555443 3333333332 455655554332222222 222333445577778888877654 2 26788899999
Q ss_pred CchHHHH
Q 010382 128 PSWARMV 134 (512)
Q Consensus 128 g~~~~~~ 134 (512)
|++..+.
T Consensus 87 g~~~gf~ 93 (452)
T TIGR01773 87 GRWAGFT 93 (452)
T ss_pred CcHHHHH
Confidence 9977654
No 56
>TIGR03810 arg_ornith_anti arginine/ornithine antiporter. Members of this protein family are the arginine/ornithine antiporter, ArcD. This exchanger of ornithine for arginine occurs in a system with arginine deiminase, ornithine carbamoyltransferase, and carbamate kinase, with together turn arginine to ornithine with the generation of ATP and release of CO2.
Probab=95.99 E-value=3.1 Score=45.23 Aligned_cols=39 Identities=18% Similarity=0.047 Sum_probs=29.1
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHHH
Q 010382 319 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFI 360 (512)
Q Consensus 319 a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~v 360 (512)
..+.++..+|+ +...++.++.+.+.+++..+..+++..+
T Consensus 266 ~~~~~~~~~g~---~~~~~i~~~~~is~~~~~~~~~~~~sR~ 304 (468)
T TIGR03810 266 MAYVLEHMVGT---WGAVLINIGLIISILGAWLSWTLLPAEI 304 (468)
T ss_pred HHHHHHHHcch---HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888888 7778888888888888877766654433
No 57
>TIGR03813 put_Glu_GABA_T putative glutamate/gamma-aminobutyrate antiporter. Members of this protein family are putative putative glutamate/gamma-aminobutyrate antiporters. Each member of the seed alignment is found adjacent to a glutamate decarboxylase, which converts glutamate (Glu) to gamma-aminobutyrate (GABA). However, the majority belong to genome contexts with a glutaminase (converts Gln to Glu) as well as the decarboxylase that converts Glu to GABA. The specificity of the transporter remains uncertain.
Probab=95.95 E-value=3.2 Score=45.14 Aligned_cols=62 Identities=19% Similarity=0.204 Sum_probs=34.2
Q ss_pred HHhhcCCCchhhhhhHHHHHhHHHHHHHHHHH-----HHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWAT-----AVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 67 s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~-----~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
.++-.+-.|+.+ .|.+|.+.+...+++. +.++.+-|++.++=. .| +..+-.|+.+|+...+.
T Consensus 13 ~~~v~~~~~~~~----~a~~G~~~~~~~~i~~~~~~ip~al~~aEL~~~~P~-~G-G~y~~~~~a~G~~~gf~ 79 (474)
T TIGR03813 13 ITAVVSLRGLPA----EAEYGLSAAFYYLFAAIFFLVPVSLVAAELATAWPE-KG-GVFRWVGEAFGARWGFL 79 (474)
T ss_pred HHHHHHhhcchH----HHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHccCCC-CC-CceeeHhhhcChhHHHH
Confidence 334444445533 3456666543332222 355566777776543 22 56778889999865543
No 58
>PRK10746 putative transport protein YifK; Provisional
Probab=95.78 E-value=3.7 Score=44.61 Aligned_cols=98 Identities=12% Similarity=0.108 Sum_probs=46.1
Q ss_pred HHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHH
Q 010382 98 TAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVL-WVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITA 176 (512)
Q Consensus 98 ~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l-~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~ 176 (512)
..+...+-|++.++=. +| +..+-.++.+|++..+.. |... +.-+.....|..+.+.-++..++. +|.|....+..
T Consensus 57 ~~v~~~~aEl~~~~P~-sG-g~~~y~~~~~g~~~Gf~~gw~~~-~~~~~~~~~~~~a~~~~l~~~~p~-~~~~~~~~~~~ 132 (461)
T PRK10746 57 FFIMRSMGEMLFLEPV-TG-SFAVYAHRYMSPFFGYLTAWSYW-FMWMAVGISEITAIGVYVQFWFPE-MAQWIPALIAV 132 (461)
T ss_pred HHHHHHHHHHHHhcCC-CC-CHHHHHHHHhCcHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHccCC-CchHHHHHHHH
Confidence 3455556777777643 44 677888888888655432 3211 111112223444444334445543 56665444333
Q ss_pred HHHHHHHHHHhcchhHHHHHHHH
Q 010382 177 LDCFIFLFLENYGVRKLEAVFAV 199 (512)
Q Consensus 177 ~~~~~~l~l~~yg~r~lE~~~~~ 199 (512)
+....+-..+-.-+.++|..+..
T Consensus 133 ~~~~~lN~~gv~~~~~~e~~~~~ 155 (461)
T PRK10746 133 ALVALANLAAVRLYGEIEFWFAM 155 (461)
T ss_pred HHHHHHHHHhHHHHHHHHHHHHH
Confidence 22111111121113677766543
No 59
>COG1115 AlsT Na+/alanine symporter [Amino acid transport and metabolism]
Probab=95.74 E-value=3.8 Score=44.34 Aligned_cols=284 Identities=13% Similarity=0.160 Sum_probs=134.5
Q ss_pred HHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcC----C-----CHHHHHHhhCC-chHHHHHH
Q 010382 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATG----R-----HLAELCREEYP-SWARMVLW 136 (512)
Q Consensus 67 s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG----~-----~L~e~~r~~yg-~~~~~~l~ 136 (512)
.++-+|.||++.-+.|=+.=|-.-+....+..+++..-++.=.-|++.-+ + +-+--+.+..+ ||.....-
T Consensus 73 la~~VGtGNIaGVAtAI~~GGPGAvFWMWi~Al~Gmat~f~E~~La~~Yr~kd~~G~~~GGP~yYi~kGl~~r~l~v~FA 152 (452)
T COG1115 73 LAARVGTGNIAGVATAIALGGPGAVFWMWIVALFGMATKFAESTLAQKYRVKDKDGEYRGGPAYYIEKGLGMRWLAVLFA 152 (452)
T ss_pred HHhccCcchHHHHHHHHHcCCCccHHHHHHHHHHHHHHHHHHHHHHhheeEeCCCCCCcCChHHHHHhhcCCcHHHHHHH
Confidence 34569999999888887777776666666666666655555444444322 1 12222333332 23222211
Q ss_pred HHHHHHH---HHHHHHHHHHHHHHHHHHccCCchhHH-HHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Q 010382 137 VMAELAL---IGSDIQEVIGSAIAIKILSNGILPLWS-GVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMF 212 (512)
Q Consensus 137 i~~~la~---i~~di~eviG~aial~lL~gg~ipl~~-gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~ 212 (512)
...+.. ++...| .-.++.+++--++ +|.|. |+.++.+. .. ..+ .|.|++-++...++=.|.+.|+...
T Consensus 153 -~~li~afg~i~n~vQ-~NsIa~a~~~af~--~~~~~~gi~la~l~-~~-VI~--GGi~rIa~v~~~vVPfMA~~Yi~~~ 224 (452)
T COG1115 153 -FALIAAFGFIGNGVQ-SNSIASALANAFG--IPPLVTGIVLALLV-AL-VIF--GGIKRIAKVSSKVVPFMAILYVLVA 224 (452)
T ss_pred -HHHHHHHHhhcchhh-HHHHHHHHHHhcC--CcHHHHHHHHHHHH-HH-HHH--cchHHHHHHHHHHHHHHHHHHHHHH
Confidence 111111 122222 2334556666677 67655 44444432 21 222 3668999999999999999888754
Q ss_pred hee-cCChh---h----hhhcccccCCChhHHHHHHHHHcccchhHHHHH-H-HHHhhhhccCccchhhhHHHHhHHHHH
Q 010382 213 GET-KPSGS---E----LLIGILVPKLSSKTIQQAVGVVGCIIMPHNVFL-H-SALVQSRDIDNNKKGRVQEALRYYSIE 282 (512)
Q Consensus 213 ~~~-~P~~~---~----v~~G~~vP~~~~~~l~~~valvGatImP~n~fl-h-S~lvq~r~~~~~~~~~~~~~~~~~~~d 282 (512)
+.. --+.. + +.++-|-| -..+-|.+|++++--...- . .-...|.+........-...-++--.+
T Consensus 225 ~~Ii~~n~~~iP~~i~~If~sAF~~------~aa~GG~~G~~v~~aI~~Gv~RGlfSNEAGmGsap~aaAaA~~~hPv~Q 298 (452)
T COG1115 225 LVIIVLNISQIPAVIALIFSSAFGP------KAAAGGFAGYTVAQAIRNGVKRGLFSNEAGMGSAPIAAAAAKTDHPVKQ 298 (452)
T ss_pred HHHHHhhHhhhHHHHHHHHHhcCCc------hhhhhhhhhHHHHHHHHHHHHHHhhcccccCCcchhHHHhhcCCCcHHH
Confidence 433 11221 1 12221111 1233455565544322211 0 000011111100000000000001111
Q ss_pred HHH---HHHH-HHHHHH-HHHHHHHhhhccCCcccccccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhH
Q 010382 283 STL---ALVV-SFMINL-FVTTVFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAG 357 (512)
Q Consensus 283 ~~~---~l~v-s~lI~~-~i~~v~A~~l~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag 357 (512)
-.+ +.++ +.+|.. .-+++-....|..+.. ..+.+=.-++++..+|+ |..++.+++++.-++||.+...|-+
T Consensus 299 Glv~~~gvfiDT~iVCt~Ta~iIL~sg~~~~~~~-~~G~~ltq~A~~~~~g~---~G~~fv~i~l~lFafTTIlg~yyyg 374 (452)
T COG1115 299 GLVQMLGVFIDTLVVCTATAFIILLSGAWNSGGG-LSGAALTQAAFSSHLGS---WGSYFVAIALFLFAFTTILGWYYYG 374 (452)
T ss_pred hHHHHhhhhhhhhHHhhHHHHHHHHcCCcccCCC-CchHHHHHHHHHHhcCc---cHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 222 2222 222211 1111111122211110 01112223678999999 9999999999999999999888877
Q ss_pred HHHHhhhcccc
Q 010382 358 QFIMGGFLNLR 368 (512)
Q Consensus 358 ~~v~~gfl~~~ 368 (512)
+..++-..+.|
T Consensus 375 e~~~~fl~~~k 385 (452)
T COG1115 375 EKNIEFLFGSK 385 (452)
T ss_pred HHHHHHHhCCc
Confidence 77766555433
No 60
>TIGR00913 2A0310 amino acid permease (yeast).
Probab=95.63 E-value=4.2 Score=44.13 Aligned_cols=79 Identities=10% Similarity=0.056 Sum_probs=41.2
Q ss_pred CccHHHHHHhhchHHHHH-HhhcCCCchhhhhhHHH---HHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHh
Q 010382 50 PFSWKKLWLFTGPGFLMS-IAFLDPGNLEGDLQSGA---IAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCRE 125 (512)
Q Consensus 50 ~~~~~~l~~~lGPG~l~s-~a~~dpG~i~t~~~AGA---~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~ 125 (512)
+.+.+++.. +|=|-+++ .-+..+|...+. +|. .++| +..-++.....+.+-|++.++=. +|-+..+..++
T Consensus 3 ~L~~~~~~~-l~vg~~IGsGif~~~~~~~~~--~Gp~~~i~~~--~i~~~~~~~~a~~~aEl~s~~P~-~gG~~~~~~~~ 76 (478)
T TIGR00913 3 SLKQRHIQM-IALGGTIGTGLLVGSGTALAT--GGPAGLLIGY--AIMGSIIYCVMQSLGEMATFYPV-VSGSFATYASR 76 (478)
T ss_pred CCcHHHHHH-HHHhccccchhhhcchhHHHh--cCCHHHHHHH--HHHHHHHHHHHHHHHHHHHhCCC-CCCCHHHHHHH
Confidence 345555443 33333333 224566665543 332 2222 22223345555666788877764 33356778888
Q ss_pred hCCchHHHH
Q 010382 126 EYPSWARMV 134 (512)
Q Consensus 126 ~yg~~~~~~ 134 (512)
.+|+...+.
T Consensus 77 ~~g~~~gf~ 85 (478)
T TIGR00913 77 FVDPAFGFA 85 (478)
T ss_pred HcCcHHHHH
Confidence 888876544
No 61
>TIGR00912 2A0309 spore germination protein (amino acid permease). This model describes spore germination protein GerKB and paralogs from Bacillus subtilis, Clostridium tetani, and other known or predicted endospore-forming members of the Firmicutes (low-GC Gram positive bacteria). Members show some similarity to amino acid permeases.
Probab=95.59 E-value=3.5 Score=42.91 Aligned_cols=100 Identities=10% Similarity=0.122 Sum_probs=53.7
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHH-HHHH-----HHHHHHHHHHHHHHHHHHHHHHccCCchhH
Q 010382 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVL-WVMA-----ELALIGSDIQEVIGSAIAIKILSNGILPLW 169 (512)
Q Consensus 96 la~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l-~i~~-----~la~i~~di~eviG~aial~lL~gg~ipl~ 169 (512)
++.+..+.+-+++.|. -|+++.|..++.+|||....+ |... ..+....+.+|++- . .+.+. .|.|
T Consensus 46 ~~~~~~~~~~~l~~~~---p~~~~~~~~~~~~Gk~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~----~-~~l~~-tp~~ 116 (359)
T TIGR00912 46 IIIFLLCLMIKIMSKF---PEKNFSEILSKYLGKILGRLLSILFILYFFLIAAYLIRIFADFIK----T-YLLPR-TPII 116 (359)
T ss_pred HHHHHHHHHHHHHHHC---CCCCHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----H-HhcCC-CCHH
Confidence 3344455555555554 478999999999999876643 2221 11222222333221 1 12232 5777
Q ss_pred HHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHH
Q 010382 170 SGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALS 207 (512)
Q Consensus 170 ~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~ 207 (512)
...++..+. ..+..+.|.|...|+..++..++.+.
T Consensus 117 ~~~l~~l~~---~~~~~~~Gi~~i~r~~~i~~~~~i~~ 151 (359)
T TIGR00912 117 VIIILIIIV---SIYIVRKGIEVLLRTAEILLIIFLIL 151 (359)
T ss_pred HHHHHHHHH---HHHHHHccHHHHHHHHHHHHHHHHHH
Confidence 644443332 22334457788888777766655555
No 62
>TIGR00909 2A0306 amino acid transporter.
Probab=95.51 E-value=4.2 Score=43.32 Aligned_cols=37 Identities=22% Similarity=0.176 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 96 la~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
...+..+.+.|++.|+-- +| +..+-.++.+||+..+.
T Consensus 48 ~~~~~a~~~~el~~~~p~-~G-g~y~~~~~~~G~~~g~~ 84 (429)
T TIGR00909 48 TALFIALVYAELAAMLPV-AG-SPYTYAYEAMGELTAFI 84 (429)
T ss_pred HHHHHHHHHHHHHhhcCC-CC-cceeeHHHHhCcHHHHH
Confidence 344566778888877764 23 55677788889876553
No 63
>PRK10197 gamma-aminobutyrate transporter; Provisional
Probab=95.14 E-value=5.9 Score=42.82 Aligned_cols=37 Identities=11% Similarity=0.196 Sum_probs=24.8
Q ss_pred HHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 96 WATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 96 la~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
+..+.++.+-|++.++=. +| +..+..+|.+|++..+.
T Consensus 37 ~~~~~al~~aEL~s~~P~-~G-g~y~y~~~~~G~~~gf~ 73 (446)
T PRK10197 37 LVVMIMRMLAEMAVATPD-TG-SFSTYADKAIGRWAGYT 73 (446)
T ss_pred HHHHHHHHHHHHHHhCCC-CC-CHHHHHHHHcChHHHHH
Confidence 333456666677766543 33 68889999999976654
No 64
>PF02554 CstA: Carbon starvation protein CstA; InterPro: IPR003706 Escherichia coli induces the synthesis of at least 30 proteins at the onset of carbon starvation, two-thirds of which are positively regulated by the cyclic AMP (cAMP) and cAMP receptor protein (CRP) complex. This family consists of carbon starvation protein CstA a predicted membrane protein. It has been suggested that CstA is involved in peptide utilization [].; GO: 0009267 cellular response to starvation, 0016020 membrane
Probab=94.95 E-value=0.81 Score=48.28 Aligned_cols=62 Identities=19% Similarity=0.396 Sum_probs=46.5
Q ss_pred CCCchhhhhhHHHHHhHH--HHHHHHHHHHHHHHHHHHhhHhhhh--cCCCHHHHHHhhCCchHHHHH
Q 010382 72 DPGNLEGDLQSGAIAGYS--LLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMVL 135 (512)
Q Consensus 72 dpG~i~t~~~AGA~~Gy~--LLWvllla~~~~~~~Q~lsaRlgvv--TG~~L~e~~r~~yg~~~~~~l 135 (512)
|+|-+..-..| +.|||- ++|+++-+.+.+ .+|.+.+=..-+ -||++.|.++|+.||..+..+
T Consensus 67 GaGPI~GPi~a-a~~GwlPa~lWI~~G~if~G-aVHD~~sl~~SvR~~G~Si~~i~~~~lG~~~~~lf 132 (376)
T PF02554_consen 67 GAGPIVGPILA-AQFGWLPALLWIVFGCIFAG-AVHDYGSLMASVRHKGKSIGEIAGKYLGKRAKKLF 132 (376)
T ss_pred ccccchHHHHH-HHhcchHHHHHHHHccHHHH-HHHHHHHHhhhhcCCCccHHHHHHHHHHHHHHHHH
Confidence 44556666666 999996 888877666665 667776665555 789999999999999877653
No 65
>PRK10580 proY putative proline-specific permease; Provisional
Probab=94.95 E-value=6.7 Score=42.44 Aligned_cols=80 Identities=10% Similarity=0.060 Sum_probs=41.6
Q ss_pred CccHHHHHHhhchHHHHHHh-hcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCC
Q 010382 50 PFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128 (512)
Q Consensus 50 ~~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg 128 (512)
..+.++... ++=|-++..+ +..||.... .+|...=+..+-.-+......+.+-|++.|+-. + -+..+..++.+|
T Consensus 10 ~L~~~~~~~-i~vg~~IG~Gif~~~g~~~~--~aG~~~~l~~~i~~i~~~~~a~~~aEl~s~~P~-~-Gg~y~y~~~~~G 84 (457)
T PRK10580 10 GLSTRHIRF-MALGSAIGTGLFYGSADAIK--MAGPSVLLAYIIGGVAAYIIMRALGEMSVHNPA-A-SSFSRYAQENLG 84 (457)
T ss_pred cCcHHHHHH-HHHHHHHHHHHHHHHHHHHH--HhChHHHHHHHHHHHHHHHHHHHHHHHHHHcCC-C-CCHHHHHHHHcC
Confidence 355555432 4444444332 456665444 234321111122223334456667788877654 2 366667888899
Q ss_pred chHHHH
Q 010382 129 SWARMV 134 (512)
Q Consensus 129 ~~~~~~ 134 (512)
+...+.
T Consensus 85 ~~~gf~ 90 (457)
T PRK10580 85 PLAGYI 90 (457)
T ss_pred cHHHHH
Confidence 976654
No 66
>TIGR00906 2A0303 cationic amino acid transport permease.
Probab=94.72 E-value=9.1 Score=42.85 Aligned_cols=28 Identities=25% Similarity=0.422 Sum_probs=20.8
Q ss_pred HHHHHHHHHHHHhhhhhHHhhhhhHHHH
Q 010382 333 PILYIWGIGLLAAGQSSTITGTYAGQFI 360 (512)
Q Consensus 333 ~a~~if~igllaAg~sStit~t~ag~~v 360 (512)
++..+..+|.+.+..++..+..++...+
T Consensus 312 ~~~~ii~~~~~~~~~~sl~~~~~~~sRi 339 (557)
T TIGR00906 312 PAKYIVAVGALCGMSTSLLGGMFPLPRV 339 (557)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6778888888888888877776664443
No 67
>PF00324 AA_permease: Amino acid permease; InterPro: IPR004841 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [], [], []. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. This domain is found in a wide variety of permeases, as well as several hypothetical proteins. ; GO: 0006810 transport, 0055085 transmembrane transport, 0016020 membrane
Probab=94.63 E-value=0.55 Score=51.06 Aligned_cols=34 Identities=26% Similarity=0.235 Sum_probs=23.0
Q ss_pred HHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHH
Q 010382 322 YLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 358 (512)
Q Consensus 322 ~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~ 358 (512)
..+..-++ +...++.++.+.+.+++..+..+++.
T Consensus 279 ~~~~~~~~---~~~~i~~~~~l~s~~s~~~~~~~~~s 312 (478)
T PF00324_consen 279 AAQYSGGP---WLAWIVNAGILISAFSSANASLYAAS 312 (478)
T ss_pred hhhhcccc---cccceecccchhhhhhhhhhhhcccc
Confidence 33444444 56678888888888888777766544
No 68
>PRK11357 frlA putative fructoselysine transporter; Provisional
Probab=94.60 E-value=7.9 Score=41.64 Aligned_cols=38 Identities=11% Similarity=-0.101 Sum_probs=25.4
Q ss_pred HHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 95 LWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 95 lla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
++..+.++.+-|++.++=.. | +.-.-.++.+|+...+.
T Consensus 54 v~~l~~al~~aEl~s~~P~~-G-G~y~y~~~~~g~~~gf~ 91 (445)
T PRK11357 54 LIVIPQMCVYAELSTAYPEN-G-ADYVYLKNAGSRPLAFL 91 (445)
T ss_pred HHHHHHHHHHHHHHhhcCCC-C-CceeeHHHhcCChhHHH
Confidence 45666788888888887653 3 34446677888865543
No 69
>PRK15015 carbon starvation protein A; Provisional
Probab=94.13 E-value=2.7 Score=47.45 Aligned_cols=62 Identities=32% Similarity=0.479 Sum_probs=45.4
Q ss_pred CCCchhhhhhHHHHHhH--HHHHHHHHHHHHHHHHHHHhhHhhhh--cCCCHHHHHHhhCCchHHHHH
Q 010382 72 DPGNLEGDLQSGAIAGY--SLLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMVL 135 (512)
Q Consensus 72 dpG~i~t~~~AGA~~Gy--~LLWvllla~~~~~~~Q~lsaRlgvv--TG~~L~e~~r~~yg~~~~~~l 135 (512)
|+|-++.-..| ++||| .++|+++-..+.+ .+|.+.+=..-+ -||++.|..||+.|+..+...
T Consensus 98 GAGPivGPvlA-a~~GwlP~~LWIl~G~vf~G-aVhD~~~L~~S~R~~GrSig~ia~~~iG~~~~~lf 163 (701)
T PRK15015 98 GAGPLVGPVLA-AQMGYLPGMIWLLAGVVLAG-AVQDFMVLFVSTRRDGRSLGELVKEEMGPTAGVIA 163 (701)
T ss_pred ccCccHHHHHH-HHHcchHHHHHHHHcceeec-hhhhhhheeeeecCCCccHHHHHHHHhhHHHHHHH
Confidence 34445555554 48999 5889877666655 778887766655 689999999999999876653
No 70
>COG1966 CstA Carbon starvation protein, predicted membrane protein [Signal transduction mechanisms]
Probab=94.10 E-value=12 Score=41.63 Aligned_cols=53 Identities=21% Similarity=0.318 Sum_probs=37.4
Q ss_pred hHHHHHhH--HHHHHHHHHHHHHHHHHHHhhHhhhh--cCCCHHHHHHhhCCchHHHH
Q 010382 81 QSGAIAGY--SLLWLLLWATAVGLLVQLLSARLGVA--TGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 81 ~AGA~~Gy--~LLWvllla~~~~~~~Q~lsaRlgvv--TG~~L~e~~r~~yg~~~~~~ 134 (512)
.-+|+||| .+||+++-..+.+ .+|.+-.-.--+ -||++.|..+|+.|+.++.+
T Consensus 75 vlAAq~G~Lp~~LWIl~G~VfaG-aVhD~~~L~~SvR~~G~Si~~ia~~~lG~~a~~~ 131 (575)
T COG1966 75 ALAAQYGWLPAFLWILLGCVFAG-AVHDYFSLMLSVRHGGKSIGEIAGKYLGRTAKVF 131 (575)
T ss_pred HHHHHhcCcHHHHHHHHhhhhhh-hhhhhhheeeeeccCCccHHHHHHHHhhhhHHHH
Confidence 45789996 7889876555444 666654333222 68999999999999987654
No 71
>PF05525 Branch_AA_trans: Branched-chain amino acid transport protein; InterPro: IPR004685 Characterised members of the branched chain Amino Acid:Cation Symporter (LIVCS) family transport all three of the branched chain aliphatic amino acids (leucine (L), isoleucine (I) and valine (V)). They function by a Na+ or H+ symport mechanism and display 12 putative transmembrane helical spanners.; GO: 0015658 branched-chain aliphatic amino acid transmembrane transporter activity, 0015803 branched-chain aliphatic amino acid transport, 0016021 integral to membrane
Probab=93.95 E-value=11 Score=40.83 Aligned_cols=77 Identities=22% Similarity=0.263 Sum_probs=53.2
Q ss_pred HHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhh-cCCCHHHHHHhhCCchHHHHHHHHHHH
Q 010382 63 GFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVA-TGRHLAELCREEYPSWARMVLWVMAEL 141 (512)
Q Consensus 63 G~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvv-TG~~L~e~~r~~yg~~~~~~l~i~~~l 141 (512)
|+..=+-+.|+||+.-=..-|.+.|-+..|..+--.+-+..+=-++ .+.+. +|.+..+.- ++-||+.+..+.+..-+
T Consensus 9 g~~LFamFFGAGNLIFPp~lG~~aG~~~~~a~~GF~lTgV~lP~Lg-via~~~~~~~~~~l~-~~v~~~f~~if~~~i~l 86 (427)
T PF05525_consen 9 GFALFAMFFGAGNLIFPPFLGQQAGSNWWPAMIGFLLTGVGLPLLG-VIAVAKSGGGIEDLA-SRVGPKFALIFTILIYL 86 (427)
T ss_pred HHHHHHHHhCCccccchHHHHHHhcchHHHHHHHHHHHHHHHHHHH-HHHHhhcCCCHHHHh-cccCcHHHHHHHHHHHH
Confidence 4555567899999999999999999998888877666665555444 44444 444555554 45688877766554433
No 72
>KOG1289 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=93.33 E-value=16 Score=40.62 Aligned_cols=32 Identities=19% Similarity=0.338 Sum_probs=21.6
Q ss_pred cccCCCCchHHHHHHHHHHHHHHHHHHHHHHH
Q 010382 430 HIMGTFKIGPILKMVSWLVAVLVILINGYLLL 461 (512)
Q Consensus 430 ~iMG~~~n~~~~~il~~~~~~~i~~ln~~~l~ 461 (512)
=..|++.-+++.+...+++++.+...-..+..
T Consensus 446 f~~gp~~lGk~s~p~~~i~v~w~lf~~vil~f 477 (550)
T KOG1289|consen 446 FRPGPFNLGKFSKPIGIIAVLWVLFMIVILCF 477 (550)
T ss_pred cCCCCccccccccchHHHHHHHHHHHHHHHhC
Confidence 45588888888888888776555554444433
No 73
>PF03845 Spore_permease: Spore germination protein; InterPro: IPR004761 Amino acid permeases are integral membrane proteins involved in the transport of amino acids into the cell. A number of such proteins have been found to be evolutionary related [, , ]. These proteins seem to contain up to 12 transmembrane segments. The best conserved region in this family is located in the second transmembrane segment. Spore germination protein (amino acid permease) is involved in the response to the germinative mixture of L-asparagine, glucose, fructose and potassium ions (AFFK). These proteins could be amino acid transporters.; GO: 0009847 spore germination, 0016021 integral to membrane
Probab=92.69 E-value=13 Score=38.06 Aligned_cols=127 Identities=21% Similarity=0.357 Sum_probs=69.8
Q ss_pred HHHHHHHHHHHHHHHhhHhhhh-cCCCHHHHHHhhCCchHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHccCC
Q 010382 93 LLLWATAVGLLVQLLSARLGVA-TGRHLAELCREEYPSWARMVLWV------MAELALIGSDIQEVIGSAIAIKILSNGI 165 (512)
Q Consensus 93 vllla~~~~~~~Q~lsaRlgvv-TG~~L~e~~r~~yg~~~~~~l~i------~~~la~i~~di~eviG~aial~lL~gg~ 165 (512)
..+++.+.+.+.-.+..|+.-- .|+++.|..++.+|||....+-+ ....+....+..|++.. .+++.
T Consensus 37 ~~ll~~~~~l~~~~l~~~l~~~~p~~~l~~~~~~~~Gk~lg~ii~~~~~l~~l~~~~~~lr~~~~~i~~-----~~lp~- 110 (320)
T PF03845_consen 37 SVLLGGLIGLLLALLIYYLLKRFPGKTLVEISEKLFGKWLGKIINLLYILYFLLISALVLREFSEFIKT-----YLLPE- 110 (320)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHCCCCCHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-----HhcCc-
Confidence 4556666666666666676665 89999999999999987664322 11222233333343332 22343
Q ss_pred chhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhhheecC--ChhhhhhcccccCCCh
Q 010382 166 LPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMFGETKP--SGSELLIGILVPKLSS 233 (512)
Q Consensus 166 ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~~~~~P--~~~~v~~G~~vP~~~~ 233 (512)
-|.|.-..+..+.+ .+..+.|.+.+-|....+...+.+.++......-| ||.. +.|-.+.
T Consensus 111 TP~~~i~~~~ll~~---~y~a~~G~e~i~R~~~~~~~~~~i~~~~i~~~~~~~~~~~~-----l~P~~~~ 172 (320)
T PF03845_consen 111 TPIWVIILLFLLVA---AYAARKGIEVIARVAEILFPIFLILLLLILLLSIPNIDWDN-----LLPVLES 172 (320)
T ss_pred CCHHHHHHHHHHHH---HHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHhcccCCHHH-----eeCcccC
Confidence 57776555444322 23445666666665555544444444444444434 4433 4565543
No 74
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=91.97 E-value=21 Score=38.79 Aligned_cols=86 Identities=15% Similarity=0.104 Sum_probs=56.2
Q ss_pred ccHHHHHHhhchHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCch
Q 010382 51 FSWKKLWLFTGPGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSW 130 (512)
Q Consensus 51 ~~~~~l~~~lGPG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~ 130 (512)
.+.|+.+. =|+..=+-+.|+||+.-=..-|.+.|-+..+..+--.+-+..+=-++.=--..+|.+..+.- ++-||+
T Consensus 5 l~~~~~l~---iG~~LFamFFGAGNLIFPp~LG~~aG~~~~~a~~GF~iT~VglPlLgiiava~~~g~~~~l~-~rv~~~ 80 (439)
T PRK15433 5 LRSRDIIA---LGFMTFALFVGAGNIIFPPMVGLQAGEHVWTAAFGFLITAVGLPVLTVVALAKVGGGVDSLS-TPIGKV 80 (439)
T ss_pred cchhHHHH---HHHHHHHHHhcCcchhccHHHHHHhcchHHHHHHHHHHHHHHHHHHHHHHHhhcCCCHHHHh-hhcchH
Confidence 34455443 36777788999999999999999998888887776666555554444333333554555554 456888
Q ss_pred HHHHHHHHHH
Q 010382 131 ARMVLWVMAE 140 (512)
Q Consensus 131 ~~~~l~i~~~ 140 (512)
....+....-
T Consensus 81 f~~~f~~~i~ 90 (439)
T PRK15433 81 AGVLLATVCY 90 (439)
T ss_pred HHHHHHHHHH
Confidence 7766544433
No 75
>PRK10435 cadB lysine/cadaverine antiporter; Provisional
Probab=91.08 E-value=25 Score=37.80 Aligned_cols=78 Identities=17% Similarity=0.104 Sum_probs=41.3
Q ss_pred CccHHHHHHhhchHHHHHHh-hcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCC
Q 010382 50 PFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYP 128 (512)
Q Consensus 50 ~~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg 128 (512)
+.+...... ++=|-+++.+ +.=||++. ++|...=+..+-..+.+.+..+.+.|++.|+=. +| +..+-.|| +|
T Consensus 6 ~lg~~~~~~-l~vg~~IGsGif~lp~~~a---~~G~~~i~~wli~~~~~l~~al~~aEL~s~~P~-~G-G~y~y~~~-~g 78 (435)
T PRK10435 6 KIGLFACTG-VVAGNMMGSGIALLPANLA---SIGSIAIWGWIISIIGAMSLAYVYARLATKNPQ-QG-GPIAYAGE-IS 78 (435)
T ss_pred cCCHHHHHH-HHHhhHHHHHHHHHHHHHH---HhHHHHHHHHHHHHHHHHHHHHHHHHHHhhCCC-CC-ChhHHHHH-HC
Confidence 445545433 3334443333 23455543 234421112222234566778888999998875 45 66667777 77
Q ss_pred chHHHH
Q 010382 129 SWARMV 134 (512)
Q Consensus 129 ~~~~~~ 134 (512)
+...+.
T Consensus 79 ~~~gf~ 84 (435)
T PRK10435 79 PAFGFQ 84 (435)
T ss_pred cHHHHH
Confidence 755443
No 76
>COG0531 PotE Amino acid transporters [Amino acid transport and metabolism]
Probab=91.01 E-value=24 Score=37.55 Aligned_cols=37 Identities=16% Similarity=-0.207 Sum_probs=24.2
Q ss_pred HHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHH
Q 010382 319 AGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQ 358 (512)
Q Consensus 319 a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~ 358 (512)
..+......|. +...+..++.+.+.+++..+...+..
T Consensus 274 ~~~~~~~~~g~---~~~~~i~~~~~~~~~~~~~~~~~~~s 310 (466)
T COG0531 274 LALAALFGGGN---WGAIIIAILALLSLFGSLLAWILAVS 310 (466)
T ss_pred HHHHHHHcCcc---HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34445555554 66777888888888887766665533
No 77
>COG0833 LysP Amino acid transporters [Amino acid transport and metabolism]
Probab=90.81 E-value=31 Score=38.41 Aligned_cols=138 Identities=12% Similarity=0.217 Sum_probs=73.3
Q ss_pred hchHHHHHHhhcCCCchhhhh-hHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhC-CchHHH-HHH
Q 010382 60 TGPGFLMSIAFLDPGNLEGDL-QSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEY-PSWARM-VLW 136 (512)
Q Consensus 60 lGPG~l~s~a~~dpG~i~t~~-~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~y-g~~~~~-~l~ 136 (512)
+|.|+.++.+ +-.... =+|+--+|.+.=.++..+. .-+=||+..+= ++|- ......+| ++-..+ .-|
T Consensus 60 IGTGLfvgsG-----~~l~~aGP~g~li~y~i~G~~vy~vm--~sLGEma~~~P-~sGs--F~~ya~rfvdpa~GFa~gW 129 (541)
T COG0833 60 IGTGLFVGSG-----KALSQAGPAGLLIAYLIIGIMVYFVM--QSLGELAVFYP-VSGS--FSTYATRFVDPAFGFALGW 129 (541)
T ss_pred cccceeeecc-----hhhhccCcHHHHHHHHHHHHHHHHHH--HHHHHHHhhcC-CCCc--hhhhhhhhcCchHHHHHHH
Confidence 7888876543 222222 4567777776666555443 34568888888 6773 11122222 222111 112
Q ss_pred HH--HHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHH
Q 010382 137 VM--AELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAW 210 (512)
Q Consensus 137 i~--~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~ 210 (512)
.. ..+..+.. |+..++.-++.-++..+|.|.++.+..+..+++=+++-.+|--.|..+..+=.++.+.|++
T Consensus 130 nYw~~w~v~~~~---El~aa~~vi~yW~p~~v~~~~w~~iF~~~i~~iN~~~Vk~fGE~Efw~s~iKV~~ii~Fii 202 (541)
T COG0833 130 NYWLNWAVTLPL---ELTAASLVIQYWFPDTVPPWIWIAIFLVLIFLLNLFGVKGFGETEFWFSSIKVLTIIGFII 202 (541)
T ss_pred HHHHHHHHHhhH---HHHHHHHhhhhhcCCCCChHHHHHHHHHHHHHHHHhcccccceehHHHHHHHHHHHHHHHH
Confidence 21 12222333 6666777778877544688888887776544443444334556676665543444444443
No 78
>TIGR03428 ureacarb_perm permease, urea carboxylase system. A number of bacteria obtain nitrogen by biotin- and ATP-dependent urea degradation system distinct from urease. The two characterized proteins of this system are the enzymes urea carboxylase and allophanate hydrolase, but other, uncharacterized proteins co-occur as genes encoded nearby in multiple organisms. This family includes predicted permeases of the amino acid permease family, likely to transport either urea or a compound from which urea is derived. It is found so far only Actinobacteria, whereas a number of other species with the urea carboxylase have an adjacent ABC transporter operon.
Probab=90.56 E-value=29 Score=37.73 Aligned_cols=43 Identities=16% Similarity=0.083 Sum_probs=27.3
Q ss_pred HHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 90 LLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 90 LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
.+...+.....++.+-|++.|+=. +| +.-.-.++-+|+...+.
T Consensus 53 ~li~~i~~l~~als~aEL~s~~P~-aG-G~Y~~~~~~~g~~~gf~ 95 (475)
T TIGR03428 53 WPVVFVGQLLVALNFAELAARYPI-SG-AIYQWSRRMGGEVIGWF 95 (475)
T ss_pred HHHHHHHHHHHHHHHHHHHhhCCC-CC-CHHHHHHHHcCccccHH
Confidence 444444555677778888887763 33 56666777788765443
No 79
>PRK10655 potE putrescine transporter; Provisional
Probab=89.29 E-value=34 Score=36.62 Aligned_cols=34 Identities=6% Similarity=0.034 Sum_probs=21.9
Q ss_pred HHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 99 AVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 99 ~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
+..+.+-|+++|+=. +| +..+-.|+.||++..+.
T Consensus 53 ~~a~~~aeL~~~~P~-~G-G~y~y~~~~~G~~~gf~ 86 (438)
T PRK10655 53 ALAYAFAKCGMFSRK-SG-GMGGYAEYAFGKSGNFM 86 (438)
T ss_pred HHHHHHHHHhhhCCC-CC-chHHHHHHHcCcchHHH
Confidence 346666777766533 23 55778888899865543
No 80
>KOG1286 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=87.12 E-value=57 Score=36.67 Aligned_cols=30 Identities=30% Similarity=0.313 Sum_probs=25.1
Q ss_pred HHHH---HHHHHHHHhhhhhHHhhhhhHHHHHh
Q 010382 333 PILY---IWGIGLLAAGQSSTITGTYAGQFIMG 362 (512)
Q Consensus 333 ~a~~---if~igllaAg~sStit~t~ag~~v~~ 362 (512)
++++ ++.++++.+..|+...+.|++...+-
T Consensus 316 ~~k~~~~ivna~iL~~~~s~~n~~~y~~sR~l~ 348 (554)
T KOG1286|consen 316 GAKYLPHIVNAGILIGLLSSLNSSLYAGSRVLY 348 (554)
T ss_pred CccccchhhhHHHHHHHHHHHHHHhHHhHHHHH
Confidence 6778 99999999999999999998776543
No 81
>PRK10836 lysine transporter; Provisional
Probab=86.75 E-value=53 Score=35.90 Aligned_cols=77 Identities=17% Similarity=0.144 Sum_probs=36.5
Q ss_pred CCccHHHHHHhhchHHHHHHh-hcCCCchhhhhhH-HHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhh
Q 010382 49 PPFSWKKLWLFTGPGFLMSIA-FLDPGNLEGDLQS-GAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREE 126 (512)
Q Consensus 49 ~~~~~~~l~~~lGPG~l~s~a-~~dpG~i~t~~~A-GA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~ 126 (512)
++.+.++... ++=|-+++.+ +..||......-. ++-++|-+ .-+.....++.+-|+++|+=..-| ...-.++.
T Consensus 15 r~L~~~~~~~-l~vG~~IGsGif~~~g~~~~~aGp~~~l~a~~i--~g~~~~~~al~~aEL~s~~P~sGg--~y~y~~~~ 89 (489)
T PRK10836 15 RELKARHLTM-IAIGGSIGTGLFVASGATISQAGPGGALLSYML--IGLMVYFLMTSLGELAAYMPVSGS--FATYGQNY 89 (489)
T ss_pred ccCcHHHHHH-HHHhhhhhhhhhHhhhHHHHhcCCHHHHHHHHH--HHHHHHHHHHHHHHHHHHCCCCCC--HHHHHHHH
Confidence 3455555443 3333333333 4566665553221 12222222 223445566677888888876333 33334444
Q ss_pred CCch
Q 010382 127 YPSW 130 (512)
Q Consensus 127 yg~~ 130 (512)
+|+.
T Consensus 90 ~g~~ 93 (489)
T PRK10836 90 VEEG 93 (489)
T ss_pred cChH
Confidence 4543
No 82
>PLN03074 auxin influx permease; Provisional
Probab=85.15 E-value=64 Score=35.42 Aligned_cols=32 Identities=16% Similarity=0.219 Sum_probs=16.4
Q ss_pred HHhhhcccc-hhhhHHHHHHHHHHHHHHHHHHH
Q 010382 360 IMGGFLNLR-LKKWLRALITRSCAIVPTIIVAL 391 (512)
Q Consensus 360 v~~gfl~~~-~~~~~~~~~~~~~aivpal~va~ 391 (512)
+.|...+.+ .+....|...|....+.+.+++.
T Consensus 336 ~~e~~~~~~~~k~~~~r~~~R~~lv~~~~~iA~ 368 (473)
T PLN03074 336 VWEKAIGVHDTKSICLRALARLPVVVPIWFLAI 368 (473)
T ss_pred HHHHHhcccccccHHHHHHHHHHHHHHHHHHHH
Confidence 345544433 12333456667766666666554
No 83
>PRK03557 zinc transporter ZitB; Provisional
Probab=78.98 E-value=83 Score=32.45 Aligned_cols=19 Identities=21% Similarity=0.296 Sum_probs=14.8
Q ss_pred cchhHHHHHHHHHHHHHHH
Q 010382 188 YGVRKLEAVFAVLIATMAL 206 (512)
Q Consensus 188 yg~r~lE~~~~~li~~m~l 206 (512)
||+.|+|.+...+.+++.+
T Consensus 81 yG~~r~E~l~al~~~~~l~ 99 (312)
T PRK03557 81 FGWLRLTTLAAFVNAIALV 99 (312)
T ss_pred CchHHHHHHHHHHHHHHHH
Confidence 8999999998877665433
No 84
>COG1114 BrnQ Branched-chain amino acid permeases [Amino acid transport and metabolism]
Probab=68.76 E-value=1.8e+02 Score=31.60 Aligned_cols=75 Identities=21% Similarity=0.234 Sum_probs=51.8
Q ss_pred hHHHHHHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHHHHH
Q 010382 62 PGFLMSIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMVLWV 137 (512)
Q Consensus 62 PG~l~s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l~i 137 (512)
=|++.=+-+.|+||+.-=...|...|....|..+--.+-+.-+=-+.-=-....|++.-+.-+ +.|||....+-.
T Consensus 10 ~GfmLFalFFGAGNlIFPP~LG~~aG~~~~~A~lGFllTgVglPlLgiIa~a~~g~~~~~l~~-~i~~~fg~~f~~ 84 (431)
T COG1114 10 LGFMLFALFFGAGNLIFPPMLGLHAGEHVWPAILGFLLTGVGLPLLGIIAVALYGGGVESLAT-RIGPWFGVLFAI 84 (431)
T ss_pred HHHHHHHHHhcCCCccCChhhhhhcCccHHHHHHHHHHHHhhHHHHHHHHhhccCCCHHHHhh-hccchHHHHHHH
Confidence 366666779999999999999999999877766644444443333433334557777776664 568887765433
No 85
>KOG1304 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=68.08 E-value=1.9e+02 Score=31.68 Aligned_cols=141 Identities=16% Similarity=0.208 Sum_probs=67.6
Q ss_pred HHHhhhccCCcccccccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHH---HHhhhcccch---hhhH
Q 010382 300 VFAKGFYGTEQANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQF---IMGGFLNLRL---KKWL 373 (512)
Q Consensus 300 v~A~~l~~~~~~~~~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~---v~~gfl~~~~---~~~~ 373 (512)
.++..-||.+..+.++++=.-+-+ .. ..+..++++++.+ -.+.... ++|..+..|. +++.
T Consensus 296 f~GYl~fG~~v~~sITLNLP~~~l----~~---~Vkl~~ai~I~ls-------~pLQ~yv~~eIi~~~i~~k~~~~~~~~ 361 (449)
T KOG1304|consen 296 FFGYLAFGDDVKGSITLNLPQEIL----SQ---TVKLLLAIAIFLT-------YPLQFYVPIEIIEPGIRKKFSENRKKL 361 (449)
T ss_pred HHHHhhccccccceEEecCCccHH----HH---HHHHHHHHHHHHc-------CchhhhhhHHHHHHhHHHhcCcchhHH
Confidence 344556777765566654221222 22 3455566665532 2222111 2333222222 2233
Q ss_pred HHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcccc-CCCCchHHHHHHHHHHHHHH
Q 010382 374 RALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVSQEHIM-GTFKIGPILKMVSWLVAVLV 452 (512)
Q Consensus 374 ~~~~~~~~aivpal~va~~~g~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n~~~iM-G~~~n~~~~~il~~~~~~~i 452 (512)
..+..|...++-+..+|... ++ +..+.-......+..+-++.=|++.+.-..... |.++-.++.|++..+..++.
T Consensus 362 ~~~~~R~~lVllt~~iA~~i--Pn--L~~fisLVGs~~~s~L~li~P~liel~~~~~~~~~~~~~~~~~ni~l~~~G~~~ 437 (449)
T KOG1304|consen 362 LEYALRVFLVLLTFLIAVAV--PN--LALFISLVGSVSCSLLALIFPPLIELITFYPEGKGRFMWKLIKNIVLIVFGVFG 437 (449)
T ss_pred HHHHHHHHHHHHHHHHHHHC--Cc--HHhhHHHHHHHHHHHHHHHccHHHHHHHhcccccCceehHHHHHHHHHHHHHHH
Confidence 34555666555455555432 21 455544444444444444444555443332222 78888888887666555555
Q ss_pred HHHHHH
Q 010382 453 ILINGY 458 (512)
Q Consensus 453 ~~ln~~ 458 (512)
++.+.|
T Consensus 438 ~v~Gty 443 (449)
T KOG1304|consen 438 FVYGTY 443 (449)
T ss_pred HHHHHh
Confidence 544444
No 86
>KOG2349 consensus Na+:iodide/myo-inositol/multivitamin symporters [Inorganic ion transport and metabolism]
Probab=65.25 E-value=2.5e+02 Score=31.91 Aligned_cols=109 Identities=20% Similarity=0.206 Sum_probs=62.0
Q ss_pred HHhhcCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHH----HHHhhHhhhhcCCCHHHHHHhhCCchHHHHHHHHHHHH
Q 010382 67 SIAFLDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLV----QLLSARLGVATGRHLAELCREEYPSWARMVLWVMAELA 142 (512)
Q Consensus 67 s~a~~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~----Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~l~i~~~la 142 (512)
-+.+++.+++.+-...|++||.+-.|.-+-........ --.--|.++. +.-|-.+.||++..+.. +....+.
T Consensus 57 ~aS~~s~~~~~gl~~e~~~~G~~~~~~~~~~l~~~~~~~~~f~Pvf~~~~v~---~~~eYl~~Rf~~~~r~l-~~l~f~l 132 (585)
T KOG2349|consen 57 FASNISSVHFLGLPGEGYAYGIQYWFFEWNALLSVLLLGWIFIPVFYRLGVT---TMYEYLEKRFGGRVRYL-ATLSFIL 132 (585)
T ss_pred hhhhhcceeeecCchHHHHHHHHHHHHHHHHHHHHHhhheEEEEEEEecCee---ehhHHHHHHhcccchhh-HHHHHHH
Confidence 36788899999999999999999777655443333222 2222344443 46788888998874442 3333222
Q ss_pred HHHHHHHHHH-HHHHHHHHHccCCchhHHHHHHHHHHHHH
Q 010382 143 LIGSDIQEVI-GSAIAIKILSNGILPLWSGVVITALDCFI 181 (512)
Q Consensus 143 ~i~~di~evi-G~aial~lL~gg~ipl~~gvli~~~~~~~ 181 (512)
.+..-+...+ --|+++|-.+| +.++..+.+....|..
T Consensus 133 ~~~~~l~v~~y~pal~~~qvtg--~~~~l~~~~~~~ic~~ 170 (585)
T KOG2349|consen 133 MIFLYLPVDMYAPALAINQVTG--INLYLIVVILGLICVF 170 (585)
T ss_pred HHHhheeeeEeehHHHHHHHhc--cCceeehHHHHHHHHH
Confidence 2222222111 12567777777 5666544544444433
No 87
>TIGR01297 CDF cation diffusion facilitator family transporter. This model describes a broadly distributed family of transporters, a number of which have been shown to transport divalent cations of cobalt, cadmium and/or zinc. The family has six predicted transmembrane domains. Members of the family are variable in length because of variably sized inserts, often containing low-complexity sequence.
Probab=57.44 E-value=1.9e+02 Score=28.48 Aligned_cols=17 Identities=24% Similarity=0.368 Sum_probs=13.9
Q ss_pred cchhHHHHHHHHHHHHH
Q 010382 188 YGVRKLEAVFAVLIATM 204 (512)
Q Consensus 188 yg~r~lE~~~~~li~~m 204 (512)
||+.|+|.+...+.++.
T Consensus 52 yG~~r~E~l~~l~~~~~ 68 (268)
T TIGR01297 52 FGHGRAEILAALLNGLF 68 (268)
T ss_pred CchHHHHHHHHHHHHHH
Confidence 89999999987766654
No 88
>PRK09509 fieF ferrous iron efflux protein F; Reviewed
Probab=56.15 E-value=2.4e+02 Score=28.77 Aligned_cols=18 Identities=22% Similarity=0.322 Sum_probs=14.0
Q ss_pred cchhHHHHHHHHHHHHHH
Q 010382 188 YGVRKLEAVFAVLIATMA 205 (512)
Q Consensus 188 yg~r~lE~~~~~li~~m~ 205 (512)
||+.|+|.+...+.+++.
T Consensus 73 yG~~r~E~l~~l~~~~~l 90 (299)
T PRK09509 73 FGHGKAESLAALAQSMFI 90 (299)
T ss_pred CccHHHHHHHHHHHHHHH
Confidence 788999999877666543
No 89
>KOG1303 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=56.13 E-value=3e+02 Score=30.01 Aligned_cols=133 Identities=20% Similarity=0.183 Sum_probs=59.3
Q ss_pred CCHHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc-----cC-CchhHHHHHHHHHHHHHHHHHHhcch
Q 010382 117 RHLAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILS-----NG-ILPLWSGVVITALDCFIFLFLENYGV 190 (512)
Q Consensus 117 ~~L~e~~r~~yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL~-----gg-~ipl~~gvli~~~~~~~~l~l~~yg~ 190 (512)
++-.|+.++-||++.++..+....+...+..+.-++=.+.-++-++ +. .+..-...+++++.++.+.++.+..
T Consensus 105 ~~Y~dl~~~afG~~~~~iv~~~~~~~~fg~~v~y~il~~~~L~~~~~~~~~~~~~l~~~~f~iif~~i~~~~s~lp~~~- 183 (437)
T KOG1303|consen 105 YRYPDLGQAAFGPKGRLLVSVLQYLELFGICVVYIILAGDNLKALFPIVSLNDNSLDKQYFIIIFGLIVLPLSQLPNFH- 183 (437)
T ss_pred CChHHHHHHHhCCCceEeeeHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccccccceehhhhHHHHHHHHHHCCCcc-
Confidence 3478888888997656544443333333333322222222222222 11 1211223455555555566665542
Q ss_pred hHHHHHHHHHHHHHHHHHHHhhheecCChh----hhhhcccccCCC-hhHHHHHHHHHcccchhHHHHH
Q 010382 191 RKLEAVFAVLIATMALSFAWMFGETKPSGS----ELLIGILVPKLS-SKTIQQAVGVVGCIIMPHNVFL 254 (512)
Q Consensus 191 r~lE~~~~~li~~m~l~F~~~~~~~~P~~~----~v~~G~~vP~~~-~~~l~~~valvGatImP~n~fl 254 (512)
.+ +......++|..++...++.+..-.+ +..++ .|+.. ....+.++|++.-.-.-|+.+.
T Consensus 184 -~l-~~~S~~~avmS~~~a~~~~~~g~~~g~~~~~~~~~--~~~~~~~~~~f~a~g~iaFaf~gH~v~p 248 (437)
T KOG1303|consen 184 -SL-SYLSLVGAVMSTLYAVILIVLGIADGVGFCAPSGG--YLDLGTIPTVFTALGIIAFAYGGHAVLP 248 (437)
T ss_pred -hh-HHHHHHHHHHHHHHHHHHHHHhhccccccCCcccC--cccCCCCcchhhhhhheeeeecCCeeee
Confidence 11 22223334444444433333321111 11122 12221 1122788999988877788764
No 90
>PF06738 DUF1212: Protein of unknown function (DUF1212); InterPro: IPR010619 This entry represents a predicted domain found within a number of hypothetical proteins of unknown function found in eukaryotes, bacteria and archaea. Some of these sequences are predicted to be membrane proteins.
Probab=53.48 E-value=95 Score=29.30 Aligned_cols=10 Identities=30% Similarity=0.381 Sum_probs=6.6
Q ss_pred HHHHHHccCC
Q 010382 156 IAIKILSNGI 165 (512)
Q Consensus 156 ial~lL~gg~ 165 (512)
.++.++|||.
T Consensus 115 ~~fa~lfgg~ 124 (193)
T PF06738_consen 115 AAFALLFGGS 124 (193)
T ss_pred HHHHHHHCCC
Confidence 3566778875
No 91
>PRK15238 inner membrane transporter YjeM; Provisional
Probab=45.63 E-value=4.4e+02 Score=28.77 Aligned_cols=44 Identities=11% Similarity=0.194 Sum_probs=26.5
Q ss_pred HHHHHHHHHH----HHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHH
Q 010382 89 SLLWLLLWAT----AVGLLVQLLSARLGVATGRHLAELCREEYPSWARM 133 (512)
Q Consensus 89 ~LLWvllla~----~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~ 133 (512)
..+|.++.+. +.+..+-|++.++=-..| +.-.-.|+-+|++..+
T Consensus 39 ~i~~~~i~~~~~~l~~al~~aEL~s~~P~~aG-G~Y~w~~~~~G~~~gf 86 (496)
T PRK15238 39 AIPWYILSAILFFIPFALMMAEYGSAFKDEKG-GIYSWMNKSVGPKFAF 86 (496)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhcCCCCCC-cHHHHHHHHcCchHHH
Confidence 4455544443 344556777766432223 7788888999986654
No 92
>COG0053 MMT1 Predicted Co/Zn/Cd cation transporters [Inorganic ion transport and metabolism]
Probab=43.53 E-value=1.4e+02 Score=30.78 Aligned_cols=91 Identities=11% Similarity=0.132 Sum_probs=50.1
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheecCChhhhhhcccccCC-ChhHHHHHHHHHcccchhHHHHHHHHHhhhhccCc
Q 010382 188 YGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKL-SSKTIQQAVGVVGCIIMPHNVFLHSALVQSRDIDN 266 (512)
Q Consensus 188 yg~r~lE~~~~~li~~m~l~F~~~~~~~~P~~~~v~~G~~vP~~-~~~~l~~~valvGatImP~n~flhS~lvq~r~~~~ 266 (512)
||..|.|.+...+++++.+...+..+. .+ ...++.|.. +.+.+...+++++..++-+...+.- |..++
T Consensus 75 yGh~k~E~l~sl~~~~~i~~~g~~i~~-----~a-~~~~~~~~~~~~~~~~~~v~l~s~~~~~~l~~~~~-----~~~kk 143 (304)
T COG0053 75 YGHGKAETLASLIVSILIFAAGFEILL-----EA-IKRLISPQPVEPPLLALGVALISIVIKEALYRYLR-----RVGKK 143 (304)
T ss_pred CCchhHHHHHHHHHHHHHHHHHHHHHH-----HH-HHHHhCCCCCCccHHHHHHHHHHHHHHHHHHHHHH-----HHHHH
Confidence 899999999888777654444333321 11 222233553 3456677788888776665554431 22222
Q ss_pred cchhhhHHHHhHHHHHHHHHHHH
Q 010382 267 NKKGRVQEALRYYSIESTLALVV 289 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~d~~~~l~v 289 (512)
.+....+.+-...+-|...++.+
T Consensus 144 ~~S~aL~Ada~h~~sD~~ts~~~ 166 (304)
T COG0053 144 TNSQALIADALHHRSDVLTSLAV 166 (304)
T ss_pred hCCHHHHHHhHHHHHHHHHHHHH
Confidence 22233444555666677665544
No 93
>PRK04125 murein hydrolase regulator LrgA; Provisional
Probab=43.40 E-value=2.2e+02 Score=26.17 Aligned_cols=50 Identities=16% Similarity=0.188 Sum_probs=29.5
Q ss_pred HHccCCchhHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHhh
Q 010382 160 ILSNGILPLWSGVVITALDCFIFLFLENYGVRKLEAVFAVLIATMALSFAWMF 212 (512)
Q Consensus 160 lL~gg~ipl~~gvli~~~~~~~~l~l~~yg~r~lE~~~~~li~~m~l~F~~~~ 212 (512)
-+++ +|+..+++=..+. ++.+..+.--.+.+|.....+..-|.+-|+.+.
T Consensus 28 ~ll~--lPiPGsViGMlLL-~l~L~~~~vk~~~v~~~a~~LL~~m~LfFVPag 77 (141)
T PRK04125 28 SFLP--IPMPASVIGLVLL-FVLLCTKVVKLEQVESLGTALTNNIGFLFVPSG 77 (141)
T ss_pred HHcC--CCCcHHHHHHHHH-HHHHHhCCcCHHHHHHHHHHHHHHHHHHHhhhH
Confidence 4456 5554433322221 333344433347899999999999988887553
No 94
>PF05313 Pox_P21: Poxvirus P21 membrane protein; InterPro: IPR007977 The p21 membrane protein of vaccinia virus, encoded by the A17L (or A18L) gene, has been reported to localise on the inner of the two membranes of the intracellular mature virus (IMV). It has also been shown that p21 acts as a membrane anchor for the externally located fusion protein P14 (A27L gene) [].; GO: 0016021 integral to membrane
Probab=38.88 E-value=3.6e+02 Score=25.89 Aligned_cols=68 Identities=15% Similarity=0.328 Sum_probs=30.5
Q ss_pred HHHHHHHHHHHHHHHHHhcCccccCCC-CchHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccc--hhHHHHHHHHHHHH
Q 010382 409 VLQSVQIPFALIPLLYLVSQEHIMGTF-KIGPILKMVSWLVAVLVILINGYLLLEFFSSEVNG--VLIATVIGVFTAGY 484 (512)
Q Consensus 409 Vl~si~LPfalipll~l~n~~~iMG~~-~n~~~~~il~~~~~~~i~~ln~~~l~~~l~~~~~~--~~~~~~~~~~~~~y 484 (512)
++.++.+|+-.+.+-+- -.=+++..- .++..+.+++.+.+++.+.+|... .+.+ ...+++++++.|+|
T Consensus 87 ~iAs~llP~PsLVIaYC-l~mqi~~~~~~~~~gMsIvcv~~Si~ti~~~~~s-------~s~~~~ti~yIiL~iLf~~Y 157 (189)
T PF05313_consen 87 IIASLLLPFPSLVIAYC-LSMQIYNPGANNNVGMSIVCVIMSIITIIVNSVS-------GSSGAYTISYIILAILFCIY 157 (189)
T ss_pred HHHHHHcCccHHHHHHH-HHheeecCCCcceehhHHHHHHHHHHHHHHHhhh-------HhHHHHHHHHHHHHHHHHHh
Confidence 34578888844433332 222333222 333344444444444444333222 1112 24566666666666
No 95
>PF00209 SNF: Sodium:neurotransmitter symporter family; InterPro: IPR000175 Neurotransmitter transport systems are integral to the release, re-uptake and recycling of neurotransmitters at synapses. High affinity transport proteins found in the plasma membrane of presynaptic nerve terminals and glial cells are responsible for the removal from the extracellular space of released-transmitters, thereby terminating their actions []. Plasma membrane neurotransmitter transporters fall into two structurally and mechanistically distinct families. The majority of the transporters constitute an extensive family of homologous proteins that derive energy from the co-transport of Na+ and Cl-, in order to transport neurotransmitter molecules into the cell against their concentration gradient. The family has a common structure of 12 presumed transmembrane helices and includes carriers for gamma-aminobutyric acid (GABA), noradrenaline/adrenaline, dopamine, serotonin, proline, glycine, choline, betaine and taurine. They are structurally distinct from the second more-restricted family of plasma membrane transporters, which are responsible for excitatory amino acid transport. The latter couple glutamate and aspartate uptake to the cotransport of Na+ and the counter-transport of K+, with no apparent dependence on Cl- []. In addition, both of these transporter families are distinct from the vesicular neurotransmitter transporters [, ]. Sequence analysis of the Na+/Cl- neurotransmitter superfamily reveals that it can be divided into four subfamilies, these being transporters for monoamines, the amino acids proline and glycine, GABA, and a group of orphan transporters [].; GO: 0005328 neurotransmitter:sodium symporter activity, 0006836 neurotransmitter transport, 0016021 integral to membrane; PDB: 2QEI_A 3F3C_A 3USP_A 3USK_A 3TU0_A 3GWW_A 3TT3_A 3F4J_A 3USJ_B 3GJC_B ....
Probab=38.42 E-value=5.8e+02 Score=28.16 Aligned_cols=19 Identities=26% Similarity=0.289 Sum_probs=12.6
Q ss_pred HHHHHHHHHhhhhhHHhhh
Q 010382 336 YIWGIGLLAAGQSSTITGT 354 (512)
Q Consensus 336 ~if~igllaAg~sStit~t 354 (512)
.+|-+.++.+|.+|.++..
T Consensus 349 ~lFFl~l~~agl~S~i~~~ 367 (523)
T PF00209_consen 349 ILFFLMLFLAGLTSQISML 367 (523)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhcCCce
Confidence 4666677777777776544
No 96
>PF06724 DUF1206: Domain of Unknown Function (DUF1206); InterPro: IPR009597 This region consists of two a pair of transmembrane helices and occurs three times in each of the family member proteins.
Probab=36.86 E-value=1.2e+02 Score=24.05 Aligned_cols=33 Identities=27% Similarity=0.319 Sum_probs=22.4
Q ss_pred cccchHH-HHHHHhhcCChhHHHHHHHHHHHHhhhhh
Q 010382 314 IGLVNAG-QYLQEKYGGGLFPILYIWGIGLLAAGQSS 349 (512)
Q Consensus 314 ~~l~~a~-~~L~~~~G~~~~~a~~if~igllaAg~sS 349 (512)
.+.+++. +.++..+|+ +...+.++|+++.+.-.
T Consensus 31 ~~~~~~~~~l~~~p~G~---~ll~~vg~gli~~gi~~ 64 (73)
T PF06724_consen 31 QGSQGALAWLLEQPFGR---WLLGAVGLGLIGYGIWQ 64 (73)
T ss_pred CCHHHHHHHHHhCCCcH---HHHHHHHHHHHHHHHHH
Confidence 3445554 445666888 88888888888876543
No 97
>COG4239 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=36.34 E-value=3.3e+02 Score=28.13 Aligned_cols=53 Identities=25% Similarity=0.470 Sum_probs=38.6
Q ss_pred cCCCchhhhhhHHHHHhHHHHHHHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCchHHHH
Q 010382 71 LDPGNLEGDLQSGAIAGYSLLWLLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSWARMV 134 (512)
Q Consensus 71 ~dpG~i~t~~~AGA~~Gy~LLWvllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~~~~~ 134 (512)
+|.-+-..|..|-..|||+ .+.++++.....|+-+|+.+| .++-+||.|....
T Consensus 123 LGtDdqgRDV~ARliygfR------iSvLfgL~lT~~SaliGv~~G-----A~qGyfgg~vdL~ 175 (341)
T COG4239 123 LGTDDQGRDVLARLIYGFR------ISVLFGLSLTLISALIGVLAG-----ALQGYFGGWVDLL 175 (341)
T ss_pred CCCccchhHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHH-----HHhhhhccchHHH
Confidence 3444455677777888988 467788888889999999665 4556788887653
No 98
>COG1292 BetT Choline-glycine betaine transporter [Cell envelope biogenesis, outer membrane]
Probab=36.01 E-value=6.7e+02 Score=28.17 Aligned_cols=136 Identities=14% Similarity=0.222 Sum_probs=66.7
Q ss_pred HHHHHHHHH-HHHHHHHHHHHHH-hhhccCCc-----ccccccchHHHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhh
Q 010382 281 IESTLALVV-SFMINLFVTTVFA-KGFYGTEQ-----ANNIGLVNAGQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITG 353 (512)
Q Consensus 281 ~d~~~~l~v-s~lI~~~i~~v~A-~~l~~~~~-----~~~~~l~~a~~~L~~~~G~~~~~a~~if~igllaAg~sStit~ 353 (512)
+|..+|.++ ..+.+..-.+++. ..++.... ....+.++...++-..+..- +...+.++..+.....=.+|.
T Consensus 345 REfi~gvl~~P~~~~~~wftVfG~~ai~~~~~~~~~~~~~~~~~~~e~alf~~l~~l--Pl~~v~~~~~~~~i~~FfiTs 422 (537)
T COG1292 345 REFIVGVLLIPTLFTWLWFTVFGNYALYLIINGGGGILGLVTTEGPETALFQVLSHL--PLGTLTSLLALLVIAIFFVTS 422 (537)
T ss_pred HHHHHHHHHHhHHHHHHHHHHHhhhHHHHHhccccchhhhhhccchhhHHHHHHHhC--CHHHHHHHHHHHHHHHHHhhc
Confidence 467777765 4555555454443 23332111 00111123334444443321 333444444444444444667
Q ss_pred hhhHHHHHhhhc---ccchhhhHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Q 010382 354 TYAGQFIMGGFL---NLRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWLNVLQSVQIPFALIPLLYLVS 427 (512)
Q Consensus 354 t~ag~~v~~gfl---~~~~~~~~~~~~~~~~aivpal~va~~~g~~~~~l~~l~~~~~Vl~si~LPfalipll~l~n 427 (512)
.+++.++++... +.++++|.|......+.++++.++ ..|. +..+ +-+.+ ...+||+++.++...+
T Consensus 423 aDS~s~vl~~~ss~~~~~pp~~~r~~W~v~~~~ia~~lL--~~gg----l~aL-qt~~i--i~alPF~~vll~~~~s 490 (537)
T COG1292 423 ADSGSYVLAMISSRGGEDPPRWVRVFWGVLIGLIAAVLL--LIGG----LEAL-QTAAI--ITALPFSLVLLVMMFS 490 (537)
T ss_pred cchHHHHHHHHhccCCCCChHHHHHHHHHHHHHHHHHHH--HhCC----HHHH-HHHHH--HHHccHHHHHHHHHHH
Confidence 777878775432 445677777665555555655443 3332 2222 12222 3579999998766444
No 99
>PRK10420 L-lactate permease; Provisional
Probab=32.99 E-value=4.8e+02 Score=29.42 Aligned_cols=43 Identities=19% Similarity=0.215 Sum_probs=28.4
Q ss_pred HHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHHhHHHH
Q 010382 236 IQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSI 281 (512)
Q Consensus 236 l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~~~~~ 281 (512)
...+-|-+|.+|.|+|+-.-++.+...+.+ .+..|+.+++...
T Consensus 488 aq~~Gg~~GkmIspq~I~~a~a~vg~~G~E---g~ilr~t~~~~l~ 530 (551)
T PRK10420 488 ANTTGGVTGKMISPQSIAIACAAVGLVGKE---SDLFRFTVKHSLI 530 (551)
T ss_pred HHHHhhHHhhccCHHHHHHHHHHHccCCcH---HHHHHHHHHHHHH
Confidence 345667889999999999988777544322 2345556665433
No 100
>PRK09928 choline transport protein BetT; Provisional
Probab=32.97 E-value=8.3e+02 Score=28.34 Aligned_cols=82 Identities=15% Similarity=0.306 Sum_probs=46.2
Q ss_pred HHHHHHHHHHHhhhhhHHhhhhhHHHHHhhhcc------cchhhhHHHHHHHHHHHHHHHHHHHhhcCCcchHHHHHHHH
Q 010382 334 ILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLN------LRLKKWLRALITRSCAIVPTIIVALVFDTSEDMLDVLNEWL 407 (512)
Q Consensus 334 a~~if~igllaAg~sStit~t~ag~~v~~gfl~------~~~~~~~~~~~~~~~aivpal~va~~~g~~~~~l~~l~~~~ 407 (512)
...+..+..+...+...+|...++.+++..+-. -++++|.|......+..++..++ ..|. +..+ +.+
T Consensus 407 ~~~i~~~l~~il~~iFfvTSaDS~s~Vla~lts~g~~~~~~pp~~~RifW~v~ig~la~~LL--~~GG----L~aL-Qt~ 479 (679)
T PRK09928 407 AFTFSASVATITGLLFYVTSADSGALVLGNFTSKLKDINSDAPNWLRVFWSVAIGLLTLGML--MTNG----ISAL-QNT 479 (679)
T ss_pred HHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHcCCCCCCCCCCcceeeHHHHHHHHHHHHHH--HhcC----HHHH-HHH
Confidence 344555555555666677888888888876532 24567777665444444444332 2332 3332 222
Q ss_pred HHHHHHHHHHHHHHHHH
Q 010382 408 NVLQSVQIPFALIPLLY 424 (512)
Q Consensus 408 ~Vl~si~LPfalipll~ 424 (512)
.+ ...+||..+.++.
T Consensus 480 si--i~alPf~~I~ll~ 494 (679)
T PRK09928 480 TV--IMGLPFSFVIFFV 494 (679)
T ss_pred HH--HHHHHHHHHHHHH
Confidence 22 3578988887764
No 101
>COG1230 CzcD Co/Zn/Cd efflux system component [Inorganic ion transport and metabolism]
Probab=31.48 E-value=6.1e+02 Score=26.27 Aligned_cols=56 Identities=20% Similarity=0.289 Sum_probs=32.4
Q ss_pred cchhHHHHHHHHHHHHHHHHHHHhhheecCChhhhhhcccccCCChhHHHHHHHHHcccchh
Q 010382 188 YGVRKLEAVFAVLIATMALSFAWMFGETKPSGSELLIGILVPKLSSKTIQQAVGVVGCIIMP 249 (512)
Q Consensus 188 yg~r~lE~~~~~li~~m~l~F~~~~~~~~P~~~~v~~G~~vP~~~~~~l~~~valvGatImP 249 (512)
|||+|+|-+-+..-+++.++...-.. .|..+-++-|.-..+...+.+|++|=.+--
T Consensus 84 fGy~R~eiLaa~~nav~Li~~s~~I~------~EAi~R~~~P~~i~~~~ml~va~~GL~vN~ 139 (296)
T COG1230 84 FGYKRLEILAAFLNALLLIVVSLLIL------WEAIQRLLAPPPIHYSGMLVVAIIGLVVNL 139 (296)
T ss_pred ccHhHHHHHHHHHHHHHHHHHHHHHH------HHHHHHhcCCCCCCccchHHHHHHHHHHHH
Confidence 89999999877654443222211111 233455555665444667788888865543
No 102
>PRK09695 glycolate transporter; Provisional
Probab=25.72 E-value=9.9e+02 Score=27.03 Aligned_cols=43 Identities=16% Similarity=0.190 Sum_probs=27.9
Q ss_pred HHHHHHHHcccchhHHHHHHHHHhhhhccCccchhhhHHHHhHHHH
Q 010382 236 IQQAVGVVGCIIMPHNVFLHSALVQSRDIDNNKKGRVQEALRYYSI 281 (512)
Q Consensus 236 l~~~valvGatImP~n~flhS~lvq~r~~~~~~~~~~~~~~~~~~~ 281 (512)
...+-|-+|.+|.|+|+-.-++.+.-.+.+ .+..|+.+++...
T Consensus 496 aq~~Gg~~GkmIspq~I~~a~a~vgl~G~E---g~ilr~t~~~~l~ 538 (560)
T PRK09695 496 ANTSGGVTGKMISPQSIAVACAATGMVGRE---SELFRYTVKHSLI 538 (560)
T ss_pred HHHHhhHHhhccCHHHHHHHHHHHccCCch---hHHHHHHHHHHHH
Confidence 345567889999999999988777543322 2344556555433
No 103
>PF11196 DUF2834: Protein of unknown function (DUF2834); InterPro: IPR021362 This is a bacterial family of uncharacterised proteins.
Probab=25.48 E-value=4.3e+02 Score=22.57 Aligned_cols=57 Identities=18% Similarity=0.291 Sum_probs=37.8
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhhcccchhHHHHHHHHHHHHHHHHHHHHHhc
Q 010382 439 PILKMVSWLVAVLVILINGYLLLEFFSSEVNGVLIATVIGVFTAGYVAFIIYLVSRG 495 (512)
Q Consensus 439 ~~~~il~~~~~~~i~~ln~~~l~~~l~~~~~~~~~~~~~~~~~~~y~~~~~yl~~~~ 495 (512)
+...-+.+=..+..+.+.+..+.|.=-....+++.+++........+++-+||..|.
T Consensus 39 ~as~~~~~Dl~i~ai~~~vwi~~E~rr~~ir~~w~~i~~t~~vgvs~glPLyL~lRe 95 (97)
T PF11196_consen 39 PASSFLSWDLLIAAIALLVWIVVEARRLGIRHWWLYIVLTFFVGVSFGLPLYLYLRE 95 (97)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 444455555555555555666666533344567777777777788889999999875
No 104
>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins. Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].
Probab=23.95 E-value=1.1e+03 Score=26.86 Aligned_cols=24 Identities=17% Similarity=0.258 Sum_probs=11.9
Q ss_pred HHHHhHHHHHHHHHHHHHHHHHHHHH
Q 010382 273 QEALRYYSIESTLALVVSFMINLFVT 298 (512)
Q Consensus 273 ~~~~~~~~~d~~~~l~vs~lI~~~i~ 298 (512)
++.++ ++|-.-..+...-+.++.+
T Consensus 233 ~~~l~--~lD~IG~~L~~~Gl~LfLl 256 (599)
T PF06609_consen 233 REQLK--ELDWIGIFLFIAGLALFLL 256 (599)
T ss_pred HHHHH--HhhHHHHHHHHHHHHHHHH
Confidence 44444 6787554444444444433
No 105
>PF11654 DUF2665: Protein of unknown function (DUF2665); InterPro: IPR024242 This entry represents the non classical export protein 1 family. Family members are Involved in a novel pathway of export of proteins that lack a cleavable signal sequence [].; GO: 0009306 protein secretion
Probab=23.04 E-value=1.5e+02 Score=22.10 Aligned_cols=35 Identities=29% Similarity=0.476 Sum_probs=26.1
Q ss_pred HHHHHHHHHHHHHHHhhHhhhhcCCCHHHHHHhhCCch
Q 010382 93 LLLWATAVGLLVQLLSARLGVATGRHLAELCREEYPSW 130 (512)
Q Consensus 93 vllla~~~~~~~Q~lsaRlgvvTG~~L~e~~r~~yg~~ 130 (512)
.+...+..-++-+. |.+--.|++|.|+++++|.+|
T Consensus 12 av~iG~~ayyl~e~---R~~rp~g~~L~eLl~~k~~~~ 46 (47)
T PF11654_consen 12 AVFIGTSAYYLYEN---REGRPEGHSLNELLRRKWNKW 46 (47)
T ss_pred HHHHHHHHHHHHHH---hccCCCCCcHHHHHHHHhhcc
Confidence 34444444455554 999999999999999998775
No 106
>PRK05349 Na(+)-translocating NADH-quinone reductase subunit B; Provisional
Probab=22.46 E-value=7e+02 Score=27.00 Aligned_cols=53 Identities=13% Similarity=0.033 Sum_probs=32.6
Q ss_pred hhchHHHHHHhhcCCCchhhhhhH-------------------------HHHHhHHHHHHH-HHHHHHHHHHHHHhhHh
Q 010382 59 FTGPGFLMSIAFLDPGNLEGDLQS-------------------------GAIAGYSLLWLL-LWATAVGLLVQLLSARL 111 (512)
Q Consensus 59 ~lGPG~l~s~a~~dpG~i~t~~~A-------------------------GA~~Gy~LLWvl-lla~~~~~~~Q~lsaRl 111 (512)
.+=|++++++-+.|-+.+..-.+. =-.||...+-.+ +++.+.+.+++.+..|+
T Consensus 63 ALlPa~l~~iy~fG~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~lp~~~vs~~~a~~~E~l~~~~ 141 (405)
T PRK05349 63 ALFPAMFFGMYNVGYQAQLALAAGAIADGWHYALFNALGGGTADAGWWSNFLYGALYFLPIYLVSFIVGGFWEVLFAVV 141 (405)
T ss_pred HHHHHHHHHHHHHhHHHHHHHhhccccchhhhhhhhhcccccccchhhHHHhhhhHHhhHHHHHHHHHHHHHHHHHHHH
Confidence 477999988877766665554110 123444444444 66777777777777665
No 107
>PRK15433 branched-chain amino acid transport system 2 carrier protein BrnQ; Provisional
Probab=22.12 E-value=1.1e+03 Score=25.94 Aligned_cols=60 Identities=12% Similarity=0.025 Sum_probs=42.3
Q ss_pred HHHHHHhhCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCCchhHHHHHHHHHHHH
Q 010382 119 LAELCREEYPSWARMVLWVMAELALIGSDIQEVIGSAIAIKILSNGILPLWSGVVITALDCF 180 (512)
Q Consensus 119 L~e~~r~~yg~~~~~~l~i~~~la~i~~di~eviG~aial~lL~gg~ipl~~gvli~~~~~~ 180 (512)
+.+..++.+|++..+.+-+...+++..+.++.+.+.+-=++-+++ ++-...+.+..+.++
T Consensus 267 l~~~~~~~~G~~G~~ll~iiv~lACLTTaIGLi~a~a~~f~~~~~--isY~~~v~i~~l~S~ 326 (439)
T PRK15433 267 LHAYVQHTFGGGGSFLLAALIFIACLVTAVGLTCACAEFFAQYVP--LSYRTLVFILGGFSM 326 (439)
T ss_pred HHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC--CcHHHHHHHHHHHHH
Confidence 456678888999888888888888888888877777666666655 565555555544433
No 108
>PF06570 DUF1129: Protein of unknown function (DUF1129); InterPro: IPR009214 There are currently no experimental data for members of this group or their homologues. However, these proteins contain predicted integral membrane proteins (with several transmembrane segments).
Probab=22.06 E-value=7.1e+02 Score=23.88 Aligned_cols=54 Identities=11% Similarity=0.019 Sum_probs=26.0
Q ss_pred HHHHHHHHHHHHHHHhcCccccC-CCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q 010382 411 QSVQIPFALIPLLYLVSQEHIMG-TFKIGPILKMVSWLVAVLVILINGYLLLEFFSSE 467 (512)
Q Consensus 411 ~si~LPfalipll~l~n~~~iMG-~~~n~~~~~il~~~~~~~i~~ln~~~l~~~l~~~ 467 (512)
.++...++...+.....+. +. +.|.+.|..+ ...+...+..+.++.+.+.+.+.
T Consensus 119 ~~i~~G~~~~~~~~~i~~~--~~~~~r~~~~k~~-~~~~~~~~~w~~~~~~~~~lp~~ 173 (206)
T PF06570_consen 119 VSIVGGLVFYFIFKYIYPY--KKKKKRPSWWKYI-LISVLAMVLWIVIFVLTSFLPPV 173 (206)
T ss_pred HHHHHHHHHHHHHHHHhcc--cccccccHHHHHH-HHHHHHHHHHHHHHHHHHHcccc
Confidence 3445555555555554543 33 3444555444 43444444445555555555443
No 109
>COG5446 Predicted integral membrane protein [Function unknown]
Probab=22.01 E-value=5.2e+02 Score=24.95 Aligned_cols=54 Identities=20% Similarity=0.277 Sum_probs=29.4
Q ss_pred cccccchhhhhcCCCCCceEeccCCC---CCCCCCCCCCCccHHHHHHhhchHHHHHHhh
Q 010382 14 LPLLADDREERAYDPTEKVVVIGLDD---GDLDNLSTAPPFSWKKLWLFTGPGFLMSIAF 70 (512)
Q Consensus 14 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~l~~~lGPG~l~s~a~ 70 (512)
+|+..+.| .|++.|..+.-|... ...+|+.-.|...|.|.....|--.+++++|
T Consensus 31 tPLIL~AE---tyE~aE~~hshdAPgVaAh~h~dEaWaPaDGfeRta~tv~~NvvtaiGf 87 (233)
T COG5446 31 TPLILEAE---TYEKAEPVHSHDAPGVAAHVHDDEAWAPADGFERTASTVGGNVVTAIGF 87 (233)
T ss_pred ccceeehh---hhhccCCCcCCCCCCcccCcCccccCCCcchHHHHHHHhhhhHHHHHHH
Confidence 45555543 477777776533221 1111122356778888777666655555544
No 110
>COG4129 Predicted membrane protein [Function unknown]
Probab=21.74 E-value=5.8e+02 Score=26.84 Aligned_cols=19 Identities=21% Similarity=0.350 Sum_probs=15.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010382 279 YSIESTLALVVSFMINLFV 297 (512)
Q Consensus 279 ~~~d~~~~l~vs~lI~~~i 297 (512)
...|..+|..+++++|..+
T Consensus 129 r~l~~~vG~~~a~lvn~~~ 147 (332)
T COG4129 129 RFLLVFVGVGVAFLVNLVM 147 (332)
T ss_pred HHHHHHHHHHHHHHHhhhc
Confidence 3578888999988888764
No 111
>PF01788 PsbJ: PsbJ; InterPro: IPR002682 Oxygenic photosynthesis uses two multi-subunit photosystems (I and II) located in the cell membranes of cyanobacteria and in the thylakoid membranes of chloroplasts in plants and algae. Photosystem II (PSII) has a P680 reaction centre containing chlorophyll 'a' that uses light energy to carry out the oxidation (splitting) of water molecules, and to produce ATP via a proton pump. Photosystem I (PSI) has a P700 reaction centre containing chlorophyll that takes the electron and associated hydrogen donated from PSII to reduce NADP+ to NADPH. Both ATP and NADPH are subsequently used in the light-independent reactions to convert carbon dioxide to glucose using the hydrogen atom extracted from water by PSII, releasing oxygen as a by-product. PSII is a multisubunit protein-pigment complex containing polypeptides both intrinsic and extrinsic to the photosynthetic membrane [, ]. Within the core of the complex, the chlorophyll and beta-carotene pigments are mainly bound to the antenna proteins CP43 (PsbC) and CP47 (PsbB), which pass the excitation energy on to the reaction centre proteins D1 (Qb, PsbA) and D2 (Qa, PsbD) that bind all the redox-active cofactors involved in the energy conversion process. The PSII oxygen-evolving complex (OEC) oxidises water to provide protons for use by PSI, and consists of OEE1 (PsbO), OEE2 (PsbP) and OEE3 (PsbQ). The remaining subunits in PSII are of low molecular weight (less than 10 kDa), and are involved in PSII assembly, stabilisation, dimerisation, and photo-protection []. This family represents the low molecular weight transmembrane protein PsbJ found in PSII. PsbJ is one of the most hydrophobic proteins in the thylakoid membrane, and is located in a gene cluster with PsbE, PsbF and PsbL (PsbEFJL). Both PsbJ and PsbL (IPR003372 from INTERPRO) are essential for proper assembly of the OEC. Mutations in PsbJ cause the light-harvesting antenna to remain detached from the PSII dimers []. In addition, both PsbJ and PsbL are involved in the unidirectional flow of electrons, where PsbJ regulates the forward electron flow from D2 (Qa) to the plastoquinone pool, and PsbL prevents the reduction of PSII by back electron flow from plastoquinol protecting PSII from photo-inactivation [].; GO: 0015979 photosynthesis, 0009523 photosystem II, 0009539 photosystem II reaction center, 0016020 membrane; PDB: 3A0H_J 3ARC_J 3A0B_J 3KZI_J 2AXT_J 3PRQ_J 4FBY_b 3BZ2_J 1S5L_j 3PRR_J ....
Probab=21.34 E-value=1.6e+02 Score=21.11 Aligned_cols=15 Identities=27% Similarity=0.685 Sum_probs=8.7
Q ss_pred CCchhHHHHHHHHHH
Q 010382 164 GILPLWSGVVITALD 178 (512)
Q Consensus 164 g~ipl~~gvli~~~~ 178 (512)
|++|+|...-+....
T Consensus 6 GRIPLWlVgtv~G~~ 20 (40)
T PF01788_consen 6 GRIPLWLVGTVAGIA 20 (40)
T ss_dssp TSS-HHHHHHHHHHH
T ss_pred CcccchHHHHHHHHH
Confidence 578999755555443
No 112
>COG3949 Uncharacterized membrane protein [Function unknown]
Probab=20.60 E-value=1e+03 Score=25.20 Aligned_cols=123 Identities=16% Similarity=0.162 Sum_probs=70.3
Q ss_pred HHHHHHhhcCChhHHHHHHHHHHHHhhhhhHHhhhhhHHHHHhhhcccchhhhHHHHHHHHHHHHHHHHHHHhhcCCcch
Q 010382 320 GQYLQEKYGGGLFPILYIWGIGLLAAGQSSTITGTYAGQFIMGGFLNLRLKKWLRALITRSCAIVPTIIVALVFDTSEDM 399 (512)
Q Consensus 320 ~~~L~~~~G~~~~~a~~if~igllaAg~sStit~t~ag~~v~~gfl~~~~~~~~~~~~~~~~aivpal~va~~~g~~~~~ 399 (512)
.+-++...|+ +..-++=+.+...-++++++..-++....|+.+|. +.|.-.++.- ..+.+..+-+..+.
T Consensus 69 ~~~~~~v~~~---~~~ki~d~~iif~lf~~~vVM~AGags~~~e~~~l--P~wiGali~i-----~~v~i~lfl~~veg- 137 (349)
T COG3949 69 REILKYVSGP---KFAKIIDIIIIFFLFSTAVVMLAGAGSLLEEMFGL--PYWIGALIII-----LLVLILLFLGRVEG- 137 (349)
T ss_pred HHHHHHHhhH---HHHHHHHHHHHHHHHHHHHHHhccchhHHHHHhCc--cHHHHHHHHH-----HHHHHHHHHhcccc-
Confidence 4567788887 66668888888888888876665555577776664 5665544332 22223333332211
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcC---------ccccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q 010382 400 LDVLNEWLNVLQSVQIPFALIPLLYLVSQ---------EHIMGTFKIGPILKMVSWLVAVLVILINGYLLLEFFSS 466 (512)
Q Consensus 400 l~~l~~~~~Vl~si~LPfalipll~l~n~---------~~iMG~~~n~~~~~il~~~~~~~i~~ln~~~l~~~l~~ 466 (512)
+. -+|++.+|+..+.++..++. -++...++.+|+.-+.. -.++|+.-....+.+
T Consensus 138 i~-------tvn~iI~P~LIi~l~~v~~~~~f~~~~~~a~~~~~~~~~W~~~~~~------Y~alNi~~~~avLv~ 200 (349)
T COG3949 138 II-------TVNGIITPFLIIILVLVTLSFQFTNLGNAAQIVLTKQGNWKASAVG------YGALNILVAVAVLVP 200 (349)
T ss_pred ee-------eeheeHHHHHHHHHHHHHHHHHHhhccchhhhcCCcCCChHHHHHh------hhhHHHHhHhHhhhh
Confidence 22 23567899998887654332 22333445555544443 345565555555543
No 113
>COG2966 Uncharacterized conserved protein [Function unknown]
Probab=20.56 E-value=6.2e+02 Score=25.44 Aligned_cols=10 Identities=30% Similarity=0.292 Sum_probs=6.3
Q ss_pred HHHHHHccCC
Q 010382 156 IAIKILSNGI 165 (512)
Q Consensus 156 ial~lL~gg~ 165 (512)
.++..++||.
T Consensus 137 ~~f~~l~gG~ 146 (250)
T COG2966 137 AAFALLFGGG 146 (250)
T ss_pred HHHHHHcCCc
Confidence 3466777764
No 114
>KOG1288 consensus Amino acid transporters [Amino acid transport and metabolism]
Probab=20.15 E-value=1.1e+03 Score=27.70 Aligned_cols=29 Identities=17% Similarity=0.268 Sum_probs=25.0
Q ss_pred HHHHHHHHHhhhhhHHhhhhhHHHHHhhh
Q 010382 336 YIWGIGLLAAGQSSTITGTYAGQFIMGGF 364 (512)
Q Consensus 336 ~if~igllaAg~sStit~t~ag~~v~~gf 364 (512)
.+..+|+++++++|.+.+..++..+.|..
T Consensus 373 ~fi~iGi~sttlfss~s~liGasrvL~al 401 (945)
T KOG1288|consen 373 PFILIGILSTTLFSSMSGLIGASRVLEAL 401 (945)
T ss_pred hHHHHHHHHHHHHHHHHHHhhHHHHHHHH
Confidence 46789999999999999999888888765
Done!