Query 010383
Match_columns 512
No_of_seqs 683 out of 2233
Neff 12.2
Searched_HMMs 29240
Date Mon Mar 25 05:37:42 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010383.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010383hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2xpi_A Anaphase-promoting comp 100.0 1.1E-41 3.9E-46 332.3 45.6 471 7-503 66-596 (597)
2 2xpi_A Anaphase-promoting comp 100.0 7.4E-40 2.5E-44 319.5 34.7 446 2-466 92-594 (597)
3 1w3b_A UDP-N-acetylglucosamine 100.0 2.7E-29 9.3E-34 231.0 41.1 382 110-505 5-387 (388)
4 1w3b_A UDP-N-acetylglucosamine 100.0 2.1E-28 7.1E-33 225.1 43.8 377 5-469 10-386 (388)
5 4g26_A Pentatricopeptide repea 100.0 2.9E-31 9.8E-36 247.1 23.5 204 299-503 10-222 (501)
6 4g26_A Pentatricopeptide repea 100.0 6.9E-30 2.3E-34 237.8 22.5 202 266-469 12-223 (501)
7 2gw1_A Mitochondrial precursor 100.0 1.4E-25 4.8E-30 214.6 36.3 431 3-450 15-478 (514)
8 2gw1_A Mitochondrial precursor 100.0 3.4E-25 1.2E-29 212.0 37.9 446 28-492 5-483 (514)
9 3fp2_A TPR repeat-containing p 99.9 7.9E-24 2.7E-28 203.6 33.9 433 29-484 25-490 (537)
10 2y4t_A DNAJ homolog subfamily 99.9 2E-23 6.7E-28 196.1 34.4 302 105-414 27-357 (450)
11 3fp2_A TPR repeat-containing p 99.9 3.2E-23 1.1E-27 199.4 36.7 426 3-451 34-492 (537)
12 2y4t_A DNAJ homolog subfamily 99.9 2.1E-23 7E-28 196.0 34.5 357 137-507 24-441 (450)
13 3ieg_A DNAJ homolog subfamily 99.9 6.2E-20 2.1E-24 166.7 37.1 328 141-502 5-351 (359)
14 3ieg_A DNAJ homolog subfamily 99.9 7.4E-20 2.5E-24 166.2 35.0 329 105-467 4-351 (359)
15 3hym_B Cell division cycle pro 99.9 1.1E-19 3.9E-24 162.9 32.3 291 207-507 20-321 (330)
16 3hym_B Cell division cycle pro 99.9 2.6E-19 8.7E-24 160.6 33.5 270 137-413 20-297 (330)
17 2ooe_A Cleavage stimulation fa 99.9 8.2E-18 2.8E-22 160.8 40.0 415 5-450 23-492 (530)
18 2ooe_A Cleavage stimulation fa 99.9 2.7E-17 9.1E-22 157.2 41.6 427 17-485 2-492 (530)
19 2xm6_A Protein corresponding t 99.9 8.9E-17 3E-21 152.0 44.5 383 63-484 38-466 (490)
20 1fch_A Peroxisomal targeting s 99.8 1.7E-19 5.7E-24 164.5 23.1 266 211-482 66-356 (368)
21 1fch_A Peroxisomal targeting s 99.8 5.2E-19 1.8E-23 161.2 26.3 307 114-446 35-355 (368)
22 2xm6_A Protein corresponding t 99.8 1.6E-16 5.3E-21 150.3 43.7 353 103-487 38-434 (490)
23 1b89_A Protein (clathrin heavy 99.8 9.1E-19 3.1E-23 155.3 23.4 285 6-338 15-305 (449)
24 4eqf_A PEX5-related protein; a 99.8 2.3E-19 7.9E-24 163.3 19.9 267 174-481 65-352 (365)
25 1b89_A Protein (clathrin heavy 99.8 2.7E-17 9.3E-22 145.9 29.7 353 31-446 8-368 (449)
26 4eqf_A PEX5-related protein; a 99.8 8.6E-19 2.9E-23 159.5 19.8 257 244-506 65-342 (365)
27 1xi4_A Clathrin heavy chain; a 99.8 9.4E-16 3.2E-20 152.1 41.7 261 141-441 1107-1375(1630)
28 1xi4_A Clathrin heavy chain; a 99.8 2.5E-15 8.7E-20 149.1 43.9 383 28-477 984-1376(1630)
29 3cv0_A Peroxisome targeting si 99.8 1.2E-17 4.1E-22 149.4 24.9 154 325-482 148-312 (327)
30 3cv0_A Peroxisome targeting si 99.8 2.4E-17 8.3E-22 147.5 25.2 281 138-448 20-313 (327)
31 4g1t_A Interferon-induced prot 99.8 4.7E-16 1.6E-20 146.7 35.3 400 27-494 49-469 (472)
32 3mkr_A Coatomer subunit epsilo 99.8 4E-17 1.4E-21 142.1 23.9 197 277-484 63-263 (291)
33 3mkr_A Coatomer subunit epsilo 99.8 4.1E-17 1.4E-21 142.1 23.1 83 365-449 180-263 (291)
34 3spa_A Mtrpol, DNA-directed RN 99.8 2.1E-18 7.1E-23 165.5 10.2 151 350-505 126-286 (1134)
35 3spa_A Mtrpol, DNA-directed RN 99.7 2.7E-17 9.1E-22 158.0 14.8 116 383-498 124-243 (1134)
36 3e4b_A ALGK; tetratricopeptide 99.7 4.2E-15 1.4E-19 138.2 27.4 102 70-186 9-118 (452)
37 3e4b_A ALGK; tetratricopeptide 99.7 3.4E-15 1.2E-19 138.8 25.6 378 35-449 9-420 (452)
38 2pl2_A Hypothetical conserved 99.7 1.3E-15 4.4E-20 126.8 20.2 200 276-483 2-212 (217)
39 4g1t_A Interferon-induced prot 99.7 3.9E-14 1.3E-18 133.5 32.7 373 100-507 47-446 (472)
40 3uq3_A Heat shock protein STI1 99.7 3.8E-15 1.3E-19 128.2 23.2 223 247-484 8-235 (258)
41 3uq3_A Heat shock protein STI1 99.7 3.7E-15 1.3E-19 128.2 20.3 119 328-450 118-236 (258)
42 2pl2_A Hypothetical conserved 99.7 4.2E-15 1.4E-19 123.6 19.3 194 247-448 8-212 (217)
43 3u4t_A TPR repeat-containing p 99.7 3.4E-14 1.2E-18 123.2 25.4 200 281-484 39-249 (272)
44 2ho1_A Type 4 fimbrial biogene 99.7 2.3E-14 7.8E-19 122.7 23.9 211 279-497 37-248 (252)
45 2vq2_A PILW, putative fimbrial 99.7 4.5E-14 1.5E-18 118.5 25.2 213 278-497 7-221 (225)
46 3u4t_A TPR repeat-containing p 99.7 4.4E-14 1.5E-18 122.5 25.2 244 215-465 9-264 (272)
47 2q7f_A YRRB protein; TPR, prot 99.7 8E-15 2.7E-19 124.8 19.7 213 277-498 21-234 (243)
48 4e6h_A MRNA 3'-END-processing 99.7 5.7E-12 2E-16 121.0 40.2 236 262-503 327-586 (679)
49 2ho1_A Type 4 fimbrial biogene 99.6 1.9E-13 6.5E-18 117.0 25.7 195 251-451 44-239 (252)
50 2h6f_A Protein farnesyltransfe 99.6 6.1E-14 2.1E-18 126.1 23.2 238 253-501 106-363 (382)
51 2vq2_A PILW, putative fimbrial 99.6 2E-13 6.8E-18 114.6 23.0 195 250-450 14-211 (225)
52 1xnf_A Lipoprotein NLPI; TPR, 99.6 4.2E-14 1.4E-18 122.9 19.3 249 184-479 15-269 (275)
53 1ouv_A Conserved hypothetical 99.6 1.2E-12 4.1E-17 113.4 28.5 219 248-486 10-252 (273)
54 2q7f_A YRRB protein; TPR, prot 99.6 5.9E-14 2E-18 119.4 18.7 198 247-451 26-223 (243)
55 2h6f_A Protein farnesyltransfe 99.6 1.7E-13 5.7E-18 123.3 22.3 215 176-399 99-322 (382)
56 4e6h_A MRNA 3'-END-processing 99.6 4.7E-11 1.6E-15 114.7 39.0 443 12-466 50-584 (679)
57 1xnf_A Lipoprotein NLPI; TPR, 99.6 1.9E-13 6.5E-18 118.7 20.8 224 257-490 18-247 (275)
58 1ouv_A Conserved hypothetical 99.6 3.2E-12 1.1E-16 110.7 28.2 223 174-451 6-252 (273)
59 2ond_A Cleavage stimulation fa 99.6 4.7E-12 1.6E-16 111.6 27.0 217 261-485 33-270 (308)
60 3sf4_A G-protein-signaling mod 99.6 8.5E-14 2.9E-18 128.5 16.1 209 27-236 7-254 (406)
61 3vtx_A MAMA; tetratricopeptide 99.5 1.1E-12 3.6E-17 106.2 20.6 171 314-491 4-174 (184)
62 3sf4_A G-protein-signaling mod 99.5 1.1E-13 3.9E-18 127.6 15.8 304 172-507 7-363 (406)
63 4a1s_A PINS, partner of inscut 99.5 6.9E-14 2.3E-18 129.3 14.3 278 175-484 49-371 (411)
64 3vtx_A MAMA; tetratricopeptide 99.5 2E-12 6.8E-17 104.6 20.2 167 278-450 4-170 (184)
65 4a1s_A PINS, partner of inscut 99.5 1.4E-13 4.9E-18 127.2 15.1 282 30-342 49-370 (411)
66 3ro2_A PINS homolog, G-protein 99.5 1.3E-13 4.6E-18 123.5 14.1 277 176-484 7-331 (338)
67 3ulq_A Response regulator aspa 99.5 1.6E-12 5.6E-17 118.6 20.6 229 253-484 112-367 (383)
68 3ro2_A PINS homolog, G-protein 99.5 1.9E-13 6.6E-18 122.5 14.2 281 31-343 7-331 (338)
69 3ulq_A Response regulator aspa 99.5 5.3E-13 1.8E-17 121.9 17.2 239 71-343 110-367 (383)
70 4abn_A Tetratricopeptide repea 99.5 1.2E-12 3.9E-17 122.6 18.2 196 278-481 101-317 (474)
71 2ond_A Cleavage stimulation fa 99.5 2.7E-11 9.2E-16 106.7 25.2 168 278-450 98-270 (308)
72 3nf1_A KLC 1, kinesin light ch 99.4 2.9E-12 9.9E-17 113.4 17.1 240 244-484 27-306 (311)
73 3nf1_A KLC 1, kinesin light ch 99.4 4.1E-13 1.4E-17 118.9 11.1 248 174-450 27-307 (311)
74 4abn_A Tetratricopeptide repea 99.4 4.5E-12 1.5E-16 118.6 18.5 195 243-445 101-316 (474)
75 1hz4_A MALT regulatory protein 99.4 6.6E-11 2.3E-15 107.6 24.1 279 32-342 17-320 (373)
76 3as5_A MAMA; tetratricopeptide 99.4 3.8E-11 1.3E-15 97.1 20.2 165 315-484 8-172 (186)
77 3q15_A PSP28, response regulat 99.4 3.7E-11 1.3E-15 109.4 21.1 229 253-484 110-364 (378)
78 1hz4_A MALT regulatory protein 99.4 1.3E-10 4.3E-15 105.8 23.5 234 4-237 24-281 (373)
79 3as5_A MAMA; tetratricopeptide 99.4 5E-11 1.7E-15 96.4 18.6 166 279-450 8-173 (186)
80 4gyw_A UDP-N-acetylglucosamine 99.4 2.6E-11 9E-16 117.9 19.3 167 312-483 6-172 (723)
81 4i17_A Hypothetical protein; T 99.4 1.3E-10 4.5E-15 97.4 20.7 209 277-500 5-223 (228)
82 3q15_A PSP28, response regulat 99.3 1.4E-10 4.9E-15 105.5 21.6 319 26-379 7-364 (378)
83 4i17_A Hypothetical protein; T 99.3 2.1E-10 7.3E-15 96.2 19.9 197 242-451 5-210 (228)
84 4gyw_A UDP-N-acetylglucosamine 99.3 5.7E-11 2E-15 115.6 18.5 166 278-449 8-173 (723)
85 3edt_B KLC 2, kinesin light ch 99.3 3.3E-11 1.1E-15 104.9 14.4 229 255-484 12-280 (283)
86 3edt_B KLC 2, kinesin light ch 99.3 6.9E-11 2.4E-15 102.8 14.6 230 220-450 12-281 (283)
87 3mv2_B Coatomer subunit epsilo 99.2 6.1E-09 2.1E-13 88.7 23.4 179 298-484 85-281 (310)
88 1qqe_A Vesicular transport pro 99.2 4.6E-09 1.6E-13 91.5 23.5 150 44-238 32-187 (292)
89 2uy1_A Cleavage stimulation fa 99.2 3.5E-08 1.2E-12 92.2 30.3 349 118-484 28-412 (493)
90 1qqe_A Vesicular transport pro 99.2 3.4E-10 1.2E-14 98.7 15.2 172 31-202 39-227 (292)
91 3urz_A Uncharacterized protein 99.2 8E-10 2.7E-14 90.9 16.3 191 281-499 6-198 (208)
92 2uy1_A Cleavage stimulation fa 99.2 3.1E-08 1E-12 92.5 28.4 385 6-449 6-412 (493)
93 2fo7_A Synthetic consensus TPR 99.2 1.1E-09 3.7E-14 83.1 15.6 129 353-484 3-131 (136)
94 3qky_A Outer membrane assembly 99.2 1.9E-09 6.4E-14 92.5 18.1 101 278-380 14-126 (261)
95 3qky_A Outer membrane assembly 99.2 2.4E-09 8.2E-14 91.8 17.9 177 312-491 12-228 (261)
96 3mv2_B Coatomer subunit epsilo 99.1 1.4E-08 4.8E-13 86.5 21.4 180 263-450 85-282 (310)
97 4ga2_A E3 SUMO-protein ligase 99.1 2.9E-10 9.9E-15 87.9 10.2 144 359-507 5-150 (150)
98 3urz_A Uncharacterized protein 99.1 3.2E-09 1.1E-13 87.3 17.0 184 247-458 7-192 (208)
99 2fo7_A Synthetic consensus TPR 99.1 4.6E-09 1.6E-13 79.5 15.8 129 318-450 4-132 (136)
100 2pzi_A Probable serine/threoni 99.1 1.3E-09 4.4E-14 106.8 15.3 173 290-471 402-583 (681)
101 4ga2_A E3 SUMO-protein ligase 99.1 8E-10 2.8E-14 85.4 10.2 145 322-471 4-149 (150)
102 2r5s_A Uncharacterized protein 99.1 2.9E-09 9.9E-14 85.0 13.3 78 405-483 93-171 (176)
103 2pzi_A Probable serine/threoni 99.1 3.7E-09 1.3E-13 103.6 16.3 174 255-436 402-583 (681)
104 2yhc_A BAMD, UPF0169 lipoprote 99.0 2.2E-08 7.4E-13 83.5 18.7 189 278-485 3-213 (225)
105 3rjv_A Putative SEL1 repeat pr 99.0 3.4E-08 1.2E-12 81.3 19.5 175 298-486 5-198 (212)
106 3qou_A Protein YBBN; thioredox 99.0 1E-08 3.5E-13 88.9 16.6 164 278-447 116-281 (287)
107 3dra_A Protein farnesyltransfe 99.0 1.8E-07 6.1E-12 80.7 23.9 233 260-500 49-302 (306)
108 3qou_A Protein YBBN; thioredox 99.0 1.6E-08 5.5E-13 87.7 17.6 180 295-484 102-283 (287)
109 2ifu_A Gamma-SNAP; membrane fu 99.0 6.6E-09 2.3E-13 91.3 14.8 160 6-166 3-182 (307)
110 2vsy_A XCC0866; transferase, g 99.0 1.1E-08 3.7E-13 98.5 17.1 154 292-451 2-158 (568)
111 2r5s_A Uncharacterized protein 99.0 1E-08 3.5E-13 81.7 14.0 163 281-449 8-172 (176)
112 3rjv_A Putative SEL1 repeat pr 99.0 6.6E-08 2.3E-12 79.6 19.1 176 262-451 4-198 (212)
113 2vsy_A XCC0866; transferase, g 99.0 1.3E-08 4.5E-13 97.9 16.9 164 257-427 2-168 (568)
114 2yhc_A BAMD, UPF0169 lipoprote 99.0 1E-07 3.5E-12 79.4 20.1 186 245-451 5-214 (225)
115 3u3w_A Transcriptional activat 99.0 6.5E-08 2.2E-12 84.4 19.2 164 320-483 80-264 (293)
116 3dra_A Protein farnesyltransfe 98.9 8.7E-07 3E-11 76.4 24.9 232 189-463 48-300 (306)
117 2ifu_A Gamma-SNAP; membrane fu 98.9 5.1E-08 1.7E-12 85.6 15.3 89 41-129 3-101 (307)
118 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.8E-07 9.4E-12 76.0 18.8 127 318-451 9-151 (213)
119 1hh8_A P67PHOX, NCF-2, neutrop 98.9 2.9E-07 9.8E-12 75.9 18.6 128 353-485 8-150 (213)
120 4gco_A Protein STI-1; structur 98.9 1.1E-07 3.8E-12 70.6 14.4 108 388-499 15-123 (126)
121 3u3w_A Transcriptional activat 98.9 6.5E-07 2.2E-11 78.0 21.5 166 284-449 80-265 (293)
122 2qfc_A PLCR protein; TPR, HTH, 98.8 5E-07 1.7E-11 78.7 20.2 169 315-483 75-264 (293)
123 3gyz_A Chaperone protein IPGC; 98.8 4.5E-08 1.6E-12 75.0 11.0 95 388-484 38-132 (151)
124 1a17_A Serine/threonine protei 98.8 2.1E-07 7.3E-12 73.1 15.1 129 352-483 14-144 (166)
125 4gco_A Protein STI-1; structur 98.8 1.6E-07 5.4E-12 69.7 13.2 98 352-451 14-111 (126)
126 2vgx_A Chaperone SYCD; alterna 98.8 2.6E-08 8.8E-13 76.6 9.1 95 388-484 23-117 (148)
127 3q7a_A Farnesyltransferase alp 98.8 5.5E-06 1.9E-10 72.2 23.9 232 259-498 69-344 (349)
128 4f3v_A ESX-1 secretion system 98.8 8.1E-08 2.8E-12 80.7 11.8 199 291-499 18-249 (282)
129 2lni_A Stress-induced-phosphop 98.7 2.3E-07 7.7E-12 69.8 13.1 96 387-484 17-112 (133)
130 1na0_A Designed protein CTPR3; 98.7 3.2E-07 1.1E-11 68.0 13.8 112 387-501 10-121 (125)
131 2e2e_A Formate-dependent nitri 98.7 8.4E-08 2.9E-12 76.5 11.2 118 364-484 23-143 (177)
132 3gw4_A Uncharacterized protein 98.7 1.5E-07 5.1E-12 77.0 12.9 126 4-130 2-133 (203)
133 3gyz_A Chaperone protein IPGC; 98.7 1.4E-07 4.9E-12 72.2 11.7 100 350-451 35-134 (151)
134 2lni_A Stress-induced-phosphop 98.7 3.2E-07 1.1E-11 68.9 13.6 118 350-470 15-132 (133)
135 4f3v_A ESX-1 secretion system 98.7 4.1E-07 1.4E-11 76.5 14.8 194 41-238 18-237 (282)
136 2c2l_A CHIP, carboxy terminus 98.7 2.3E-07 7.9E-12 80.1 13.9 191 247-449 7-198 (281)
137 2c2l_A CHIP, carboxy terminus 98.7 1.6E-07 5.5E-12 81.1 12.7 194 278-484 3-198 (281)
138 1na0_A Designed protein CTPR3; 98.7 5.5E-07 1.9E-11 66.7 14.2 114 351-467 9-122 (125)
139 2vyi_A SGTA protein; chaperone 98.7 2.4E-07 8.2E-12 69.4 12.2 94 354-449 15-108 (131)
140 1a17_A Serine/threonine protei 98.7 5.6E-07 1.9E-11 70.7 14.8 128 317-448 15-144 (166)
141 4gcn_A Protein STI-1; structur 98.7 2.5E-07 8.4E-12 68.9 11.7 108 388-498 10-123 (127)
142 2qfc_A PLCR protein; TPR, HTH, 98.7 9.1E-07 3.1E-11 77.0 17.0 170 280-449 76-265 (293)
143 2vyi_A SGTA protein; chaperone 98.7 3.3E-07 1.1E-11 68.6 12.3 119 385-506 11-129 (131)
144 2xcb_A PCRH, regulatory protei 98.7 1.1E-07 3.9E-12 72.5 9.0 96 353-450 20-115 (142)
145 2e2e_A Formate-dependent nitri 98.6 1.7E-07 5.9E-12 74.6 10.4 121 327-451 22-145 (177)
146 3gw4_A Uncharacterized protein 98.6 1.7E-07 5.9E-12 76.6 10.5 160 40-200 3-173 (203)
147 2vgx_A Chaperone SYCD; alterna 98.6 2.2E-07 7.4E-12 71.3 10.2 99 350-450 20-118 (148)
148 3upv_A Heat shock protein STI1 98.6 6.5E-07 2.2E-11 66.6 12.6 96 387-484 5-100 (126)
149 3q7a_A Farnesyltransferase alp 98.6 3.2E-05 1.1E-09 67.4 24.4 175 150-330 65-257 (349)
150 1p5q_A FKBP52, FK506-binding p 98.6 7.3E-07 2.5E-11 79.1 14.5 94 387-482 197-291 (336)
151 1elw_A TPR1-domain of HOP; HOP 98.6 1.5E-06 5.2E-11 63.4 14.0 96 387-484 5-100 (118)
152 2xcb_A PCRH, regulatory protei 98.6 5.4E-07 1.9E-11 68.6 10.4 97 386-484 18-114 (142)
153 3upv_A Heat shock protein STI1 98.6 1.3E-06 4.4E-11 64.9 12.3 97 352-450 5-101 (126)
154 2kck_A TPR repeat; tetratricop 98.5 1.4E-06 4.8E-11 62.9 12.2 95 388-484 8-105 (112)
155 1elw_A TPR1-domain of HOP; HOP 98.5 3.1E-06 1.1E-10 61.7 14.0 98 352-451 5-102 (118)
156 1p5q_A FKBP52, FK506-binding p 98.5 1.7E-06 5.9E-11 76.7 14.7 96 351-448 196-292 (336)
157 3dss_A Geranylgeranyl transfer 98.5 5.3E-05 1.8E-09 65.7 23.2 192 295-497 90-315 (331)
158 2dba_A Smooth muscle cell asso 98.5 5.5E-06 1.9E-10 63.4 15.4 113 385-502 27-144 (148)
159 2kck_A TPR repeat; tetratricop 98.5 1.4E-06 4.8E-11 63.0 11.4 102 349-452 4-108 (112)
160 4b4t_Q 26S proteasome regulato 98.5 6.1E-06 2.1E-10 76.4 18.4 164 3-166 13-202 (434)
161 2fbn_A 70 kDa peptidylprolyl i 98.5 1.2E-07 4.1E-12 77.2 5.9 95 387-483 89-184 (198)
162 1elr_A TPR2A-domain of HOP; HO 98.5 1.8E-06 6.2E-11 64.5 11.8 108 388-498 6-119 (131)
163 3q49_B STIP1 homology and U bo 98.5 3.5E-06 1.2E-10 63.6 13.1 96 386-483 9-104 (137)
164 3sz7_A HSC70 cochaperone (SGT) 98.5 1.4E-06 4.7E-11 68.3 11.0 100 350-451 10-109 (164)
165 1hxi_A PEX5, peroxisome target 98.5 1.5E-06 5.2E-11 63.9 10.5 94 389-484 20-113 (121)
166 2fbn_A 70 kDa peptidylprolyl i 98.5 2.7E-06 9.4E-11 69.0 12.9 157 289-449 14-185 (198)
167 4gcn_A Protein STI-1; structur 98.5 2.8E-06 9.4E-11 63.1 11.6 104 353-459 10-119 (127)
168 3q49_B STIP1 homology and U bo 98.4 8.2E-06 2.8E-10 61.5 14.5 100 349-450 7-106 (137)
169 4b4t_Q 26S proteasome regulato 98.4 1E-05 3.6E-10 74.8 18.0 201 36-236 11-243 (434)
170 3sz7_A HSC70 cochaperone (SGT) 98.4 4E-06 1.4E-10 65.6 12.5 100 313-415 9-108 (164)
171 1elr_A TPR2A-domain of HOP; HO 98.4 2.2E-06 7.6E-11 64.0 10.4 111 352-465 5-121 (131)
172 2xev_A YBGF; tetratricopeptide 98.4 5.2E-06 1.8E-10 61.8 12.3 92 391-484 7-104 (129)
173 2dba_A Smooth muscle cell asso 98.4 1.1E-05 3.9E-10 61.6 13.8 98 350-450 27-128 (148)
174 1hxi_A PEX5, peroxisome target 98.3 3.8E-06 1.3E-10 61.7 10.0 96 353-450 19-114 (121)
175 3dss_A Geranylgeranyl transfer 98.3 0.00013 4.6E-09 63.2 20.7 195 291-495 41-274 (331)
176 3ro3_A PINS homolog, G-protein 98.3 3.4E-06 1.2E-10 65.7 9.4 102 29-130 9-115 (164)
177 3rkv_A Putative peptidylprolyl 98.3 8.5E-06 2.9E-10 63.6 11.5 62 422-484 64-125 (162)
178 1wao_1 Serine/threonine protei 98.3 1.9E-05 6.6E-10 73.6 15.4 118 3-128 15-134 (477)
179 2xev_A YBGF; tetratricopeptide 98.3 3.1E-05 1.1E-09 57.5 13.5 94 355-450 6-105 (129)
180 3k9i_A BH0479 protein; putativ 98.3 2.1E-06 7.1E-11 62.8 6.7 85 399-484 3-89 (117)
181 1wao_1 Serine/threonine protei 98.2 3.9E-06 1.3E-10 78.3 9.7 117 361-480 16-134 (477)
182 1ihg_A Cyclophilin 40; ppiase 98.2 1.9E-05 6.4E-10 70.9 12.7 91 385-477 272-362 (370)
183 3ro3_A PINS homolog, G-protein 98.2 4.3E-06 1.5E-10 65.2 7.6 127 3-129 18-154 (164)
184 1kt0_A FKBP51, 51 kDa FK506-bi 98.2 2.7E-05 9.1E-10 72.3 13.7 88 387-476 318-405 (457)
185 3rkv_A Putative peptidylprolyl 98.1 2.8E-05 9.7E-10 60.6 11.6 64 386-450 63-126 (162)
186 2hr2_A Hypothetical protein; a 98.1 2.7E-05 9.2E-10 58.9 10.7 104 3-106 20-144 (159)
187 3k9i_A BH0479 protein; putativ 98.1 4.5E-06 1.5E-10 60.9 6.4 86 258-345 4-91 (117)
188 1kt0_A FKBP51, 51 kDa FK506-bi 98.1 3.2E-05 1.1E-09 71.7 13.5 96 351-448 317-413 (457)
189 1ihg_A Cyclophilin 40; ppiase 98.1 3.6E-05 1.2E-09 69.0 12.2 91 350-442 272-362 (370)
190 1dce_A Protein (RAB geranylger 98.1 0.0003 1E-08 66.9 19.0 136 367-506 89-241 (567)
191 2if4_A ATFKBP42; FKBP-like, al 98.1 1.2E-05 4E-10 71.4 8.5 149 314-484 178-327 (338)
192 1klx_A Cysteine rich protein B 98.0 0.00023 7.7E-09 53.5 14.1 111 365-486 9-127 (138)
193 1dce_A Protein (RAB geranylger 98.0 0.00026 8.9E-09 67.3 17.4 174 294-474 44-244 (567)
194 2hr2_A Hypothetical protein; a 98.0 9.1E-05 3.1E-09 56.0 11.2 94 391-484 16-130 (159)
195 2if4_A ATFKBP42; FKBP-like, al 98.0 3.5E-05 1.2E-09 68.3 9.7 150 278-450 178-328 (338)
196 1zu2_A Mitochondrial import re 97.9 2.9E-05 9.8E-10 58.6 6.7 87 362-450 13-120 (158)
197 2kat_A Uncharacterized protein 97.8 0.00015 5.3E-09 52.4 9.7 78 370-449 4-81 (115)
198 3n71_A Histone lysine methyltr 97.8 9.4E-05 3.2E-09 68.5 10.2 124 361-484 319-463 (490)
199 2l6j_A TPR repeat-containing p 97.8 8.4E-05 2.9E-09 53.3 7.9 64 386-450 4-67 (111)
200 2kat_A Uncharacterized protein 97.8 0.0002 6.7E-09 51.8 9.9 85 11-97 2-86 (115)
201 1na3_A Designed protein CTPR2; 97.8 0.00022 7.7E-09 48.7 9.4 61 423-484 11-71 (91)
202 1na3_A Designed protein CTPR2; 97.7 0.00029 9.9E-09 48.2 9.3 84 385-470 8-91 (91)
203 2l6j_A TPR repeat-containing p 97.7 0.00014 5E-09 52.0 7.7 64 351-415 4-67 (111)
204 1klx_A Cysteine rich protein B 97.7 0.0011 3.6E-08 49.7 12.6 85 361-451 35-127 (138)
205 1zu2_A Mitochondrial import re 97.7 9.6E-05 3.3E-09 55.8 6.5 99 398-500 14-133 (158)
206 3n71_A Histone lysine methyltr 97.6 0.00036 1.2E-08 64.6 11.3 125 325-449 319-463 (490)
207 3ma5_A Tetratricopeptide repea 97.5 0.00059 2E-08 47.7 9.0 62 386-448 7-68 (100)
208 3ly7_A Transcriptional activat 97.5 0.0029 1E-07 55.2 14.2 78 418-499 274-351 (372)
209 3ma5_A Tetratricopeptide repea 97.5 0.00031 1.1E-08 49.2 6.5 63 278-342 6-68 (100)
210 3lvg_A Clathrin heavy chain 1; 97.4 1.1E-05 3.9E-10 71.5 -1.6 215 28-263 82-323 (624)
211 1pc2_A Mitochondria fission pr 97.3 0.00073 2.5E-08 50.4 7.1 86 402-491 14-104 (152)
212 3lvg_A Clathrin heavy chain 1; 97.1 7.3E-05 2.5E-09 66.5 -0.4 247 63-336 53-325 (624)
213 3bee_A Putative YFRE protein; 97.1 0.0048 1.6E-07 42.1 8.7 65 419-484 4-71 (93)
214 3ly7_A Transcriptional activat 97.0 0.0095 3.2E-07 52.0 12.2 74 383-460 274-347 (372)
215 2kc7_A BFR218_protein; tetratr 97.0 0.00096 3.3E-08 46.4 5.1 55 3-58 9-64 (99)
216 2kc7_A BFR218_protein; tetratr 96.9 0.0029 1E-07 43.9 6.9 56 394-450 8-64 (99)
217 3bee_A Putative YFRE protein; 96.9 0.015 5E-07 39.7 9.8 68 383-451 3-73 (93)
218 3qww_A SET and MYND domain-con 96.7 0.0045 1.5E-07 56.3 8.4 99 399-497 311-426 (433)
219 3qwp_A SET and MYND domain-con 96.7 0.0086 2.9E-07 54.6 10.3 91 393-483 294-398 (429)
220 3mkq_A Coatomer beta'-subunit; 96.7 0.16 5.6E-06 51.0 20.1 100 38-166 608-708 (814)
221 3qww_A SET and MYND domain-con 96.6 0.0052 1.8E-07 55.9 8.1 87 363-449 310-410 (433)
222 1wy6_A Hypothetical protein ST 96.6 0.12 4.1E-06 37.1 13.4 140 290-453 18-157 (172)
223 3qwp_A SET and MYND domain-con 96.5 0.0098 3.3E-07 54.2 9.3 92 358-449 294-399 (429)
224 3mkq_A Coatomer beta'-subunit; 96.5 0.2 7E-06 50.3 19.9 128 283-445 633-760 (814)
225 1nzn_A CGI-135 protein, fissio 96.5 0.024 8.1E-07 40.6 9.1 89 399-491 14-107 (126)
226 1wy6_A Hypothetical protein ST 96.5 0.13 4.6E-06 36.9 15.5 141 325-488 17-157 (172)
227 2v5f_A Prolyl 4-hydroxylase su 96.5 0.034 1.1E-06 38.9 10.0 63 387-449 6-74 (104)
228 3mkq_B Coatomer subunit alpha; 96.3 0.24 8.3E-06 38.0 14.2 130 322-482 12-141 (177)
229 4ady_A RPN2, 26S proteasome re 96.3 1.1 3.6E-05 44.8 26.8 27 31-57 232-258 (963)
230 1pc2_A Mitochondria fission pr 96.3 0.04 1.4E-06 41.1 9.3 82 367-450 14-100 (152)
231 3mkq_B Coatomer subunit alpha; 96.2 0.28 9.5E-06 37.6 15.6 130 286-447 12-141 (177)
232 3u64_A Protein TP_0956; tetrat 96.2 0.047 1.6E-06 45.7 10.3 106 367-482 179-295 (301)
233 3u64_A Protein TP_0956; tetrat 96.1 0.054 1.8E-06 45.3 10.3 96 331-426 179-282 (301)
234 2v5f_A Prolyl 4-hydroxylase su 95.9 0.061 2.1E-06 37.5 8.6 62 318-379 8-74 (104)
235 4h7y_A Dual specificity protei 95.9 0.086 2.9E-06 38.8 9.2 51 435-486 74-124 (161)
236 4h7y_A Dual specificity protei 95.7 0.29 9.9E-06 36.1 11.3 51 258-309 74-124 (161)
237 4b4t_P 26S proteasome regulato 95.3 1 3.6E-05 41.1 16.9 166 248-413 141-322 (445)
238 4b4t_P 26S proteasome regulato 95.1 0.68 2.3E-05 42.3 15.0 53 78-130 30-82 (445)
239 1nzn_A CGI-135 protein, fissio 95.1 0.2 6.8E-06 35.9 8.8 83 366-450 16-103 (126)
240 3o48_A Mitochondria fission 1 94.8 0.67 2.3E-05 33.4 10.7 74 417-492 36-112 (134)
241 4ady_A RPN2, 26S proteasome re 94.3 4.8 0.00016 40.3 32.2 260 183-449 383-657 (963)
242 2ff4_A Probable regulatory pro 94.3 0.36 1.2E-05 43.3 10.9 67 426-493 176-247 (388)
243 1y8m_A FIS1; mitochondria, unk 93.6 1.5 5.2E-05 32.0 12.8 72 418-491 36-110 (144)
244 1v54_E Cytochrome C oxidase po 93.4 0.49 1.7E-05 31.9 7.2 45 404-448 28-72 (109)
245 1qsa_A Protein (soluble lytic 92.1 8.5 0.00029 36.8 24.4 71 180-256 78-148 (618)
246 2ff4_A Probable regulatory pro 92.0 1.1 3.6E-05 40.2 10.2 98 7-105 128-246 (388)
247 4gns_B Protein CSD3, chitin bi 91.2 1.1 3.8E-05 43.6 9.9 55 428-483 344-398 (754)
248 1v54_E Cytochrome C oxidase po 90.8 1.9 6.6E-05 29.1 7.7 63 9-72 25-87 (109)
249 2y69_E Cytochrome C oxidase su 90.6 1.4 4.6E-05 31.7 7.2 46 404-449 71-116 (152)
250 4b4t_R RPN7, 26S proteasome re 90.4 1.4 4.9E-05 40.0 9.5 63 31-93 133-197 (429)
251 3ffl_A Anaphase-promoting comp 90.3 2.8 9.6E-05 31.6 9.2 64 31-94 22-93 (167)
252 4gns_B Protein CSD3, chitin bi 90.2 1.2 4.2E-05 43.4 9.2 54 286-341 344-397 (754)
253 4fhn_B Nucleoporin NUP120; pro 89.5 6.4 0.00022 41.2 14.6 51 180-235 818-868 (1139)
254 3txn_A 26S proteasome regulato 89.4 11 0.00038 33.5 20.7 27 210-236 20-46 (394)
255 4fhn_B Nucleoporin NUP120; pro 89.0 16 0.00055 38.2 17.1 165 284-472 817-987 (1139)
256 3o48_A Mitochondria fission 1 88.7 3.8 0.00013 29.5 8.4 68 383-450 37-107 (134)
257 1y8m_A FIS1; mitochondria, unk 87.3 6.9 0.00024 28.6 10.6 68 383-450 36-106 (144)
258 2y69_E Cytochrome C oxidase su 87.0 4.3 0.00015 29.2 7.7 45 12-56 71-115 (152)
259 3lpz_A GET4 (YOR164C homolog); 87.0 14 0.00048 31.8 20.7 194 7-236 9-214 (336)
260 3lpz_A GET4 (YOR164C homolog); 86.4 15 0.00052 31.6 19.0 190 259-483 11-214 (336)
261 3ffl_A Anaphase-promoting comp 85.5 5.7 0.0002 30.0 8.3 70 168-237 12-91 (167)
262 1zbp_A Hypothetical protein VP 84.2 5.6 0.00019 32.8 8.4 54 4-58 7-60 (273)
263 1qsa_A Protein (soluble lytic 83.7 32 0.0011 32.9 32.3 286 107-409 105-436 (618)
264 4b4t_R RPN7, 26S proteasome re 81.0 12 0.0004 34.0 10.4 61 176-236 133-195 (429)
265 3esl_A Checkpoint serine/threo 79.7 18 0.00061 28.4 9.3 56 364-419 92-148 (202)
266 2wpv_A GET4, UPF0363 protein Y 76.9 34 0.0012 29.2 19.6 138 9-163 12-158 (312)
267 1zbp_A Hypothetical protein VP 76.6 16 0.00054 30.3 8.6 118 359-485 5-129 (273)
268 3eiq_C Programmed cell death p 76.5 6 0.0002 34.6 6.6 79 177-256 220-300 (358)
269 3txn_A 26S proteasome regulato 75.5 44 0.0015 29.7 24.8 222 250-486 105-344 (394)
270 2wpv_A GET4, UPF0363 protein Y 74.5 40 0.0014 28.8 19.2 168 281-483 35-215 (312)
271 3esl_A Checkpoint serine/threo 70.7 36 0.0012 26.7 10.1 57 399-455 92-149 (202)
272 4a1g_A Mitotic checkpoint seri 69.0 33 0.0011 25.5 9.3 50 370-419 84-134 (152)
273 4a1g_A Mitotic checkpoint seri 66.4 38 0.0013 25.2 9.0 54 156-209 82-136 (152)
274 2ijq_A Hypothetical protein; s 63.9 17 0.0006 27.2 5.8 52 43-94 46-105 (161)
275 2wvi_A Mitotic checkpoint seri 62.4 48 0.0016 25.0 8.9 50 370-419 79-129 (164)
276 2d2s_A Exocyst complex compone 61.5 34 0.0012 27.8 7.6 24 34-57 23-46 (235)
277 3ltm_A Alpha-REP4; protein eng 61.2 57 0.002 25.5 18.0 110 384-505 93-202 (211)
278 2wvi_A Mitotic checkpoint seri 59.8 54 0.0018 24.8 8.4 55 156-210 77-132 (164)
279 2zu6_B Programmed cell death p 58.8 20 0.0007 30.5 6.1 19 3-21 12-30 (307)
280 3hra_A Ankyrin repeat family p 56.9 65 0.0022 24.8 9.2 13 195-207 159-171 (201)
281 2d2s_A Exocyst complex compone 55.6 63 0.0021 26.2 8.3 31 206-236 88-118 (235)
282 3hra_A Ankyrin repeat family p 55.3 69 0.0024 24.6 12.0 80 112-197 10-92 (201)
283 3eu9_A Huntingtin-interacting 55.2 44 0.0015 26.7 7.8 48 430-481 183-232 (240)
284 4aez_C MAD3, mitotic spindle c 52.4 42 0.0015 26.8 6.5 54 156-209 131-185 (223)
285 2xig_A Ferric uptake regulatio 52.2 66 0.0023 23.8 7.4 63 18-81 16-78 (150)
286 2fe3_A Peroxide operon regulat 52.1 59 0.002 23.8 7.1 63 18-81 11-73 (145)
287 2b7e_A PRE-mRNA processing pro 50.7 14 0.00047 22.1 2.6 28 47-74 4-31 (59)
288 2nsz_A Programmed cell death p 50.0 68 0.0023 23.0 7.7 65 388-453 9-75 (129)
289 2uwj_G Type III export protein 50.0 57 0.0019 22.1 8.5 50 395-450 48-97 (115)
290 4gq2_M Nucleoporin NUP120; bet 49.9 1.3E+02 0.0043 30.9 11.2 107 392-505 816-950 (950)
291 1mzb_A Ferric uptake regulatio 49.6 61 0.0021 23.4 6.8 62 19-81 8-70 (136)
292 3bu8_A Telomeric repeat-bindin 49.3 76 0.0026 25.1 7.2 66 10-77 88-160 (235)
293 3kae_A CDC27, possible protein 49.1 67 0.0023 24.4 6.6 27 457-483 115-141 (242)
294 2p58_C Putative type III secre 48.5 61 0.0021 22.0 9.3 50 395-450 49-98 (116)
295 2keb_A DNA polymerase subunit 48.5 59 0.002 21.8 6.7 61 47-109 27-87 (101)
296 2ion_A PDCD4, programmed cell 47.9 59 0.002 24.2 6.4 67 388-455 11-79 (152)
297 3eyy_A Putative iron uptake re 47.6 59 0.002 23.9 6.4 62 18-81 8-69 (145)
298 1n11_A Ankyrin; clathrin, BAND 46.0 1.6E+02 0.0056 26.3 16.2 14 70-83 17-30 (437)
299 4ets_A Ferric uptake regulatio 45.7 54 0.0019 24.7 6.1 71 10-81 13-86 (162)
300 2w57_A Ferric uptake regulatio 44.6 67 0.0023 23.8 6.4 63 18-81 6-69 (150)
301 4b4t_S RPN3, 26S proteasome re 44.2 94 0.0032 28.8 8.3 65 29-93 231-299 (523)
302 1wdy_A 2-5A-dependent ribonucl 43.7 1.3E+02 0.0046 24.5 14.1 19 34-52 7-25 (285)
303 4g8k_A 2-5A-dependent ribonucl 42.7 1.6E+02 0.0054 25.1 15.1 108 371-491 219-329 (337)
304 4b4t_S RPN3, 26S proteasome re 40.2 2.3E+02 0.0079 26.3 14.1 70 99-168 226-299 (523)
305 1ug3_A EIF4GI, eukaryotic prot 38.2 54 0.0018 28.5 5.7 18 4-21 21-38 (339)
306 3jxi_A Vanilloid receptor-rela 37.0 42 0.0014 27.5 4.8 51 5-55 13-72 (260)
307 3kae_A CDC27, possible protein 36.6 1.4E+02 0.0048 22.7 7.3 97 325-447 43-140 (242)
308 2fe3_A Peroxide operon regulat 35.5 1.3E+02 0.0044 22.0 7.2 59 164-223 12-70 (145)
309 2keb_A DNA polymerase subunit 35.3 1E+02 0.0034 20.7 6.2 57 440-498 28-89 (101)
310 2xig_A Ferric uptake regulatio 35.0 1.3E+02 0.0044 22.1 6.6 58 165-223 18-75 (150)
311 3ygs_P Procaspase 9; apoptosis 34.7 86 0.003 21.0 5.1 64 15-84 25-88 (97)
312 2fu4_A Ferric uptake regulatio 34.7 88 0.003 19.9 6.5 61 19-80 7-68 (83)
313 2uwj_G Type III export protein 34.3 1.1E+02 0.0037 20.8 9.7 78 294-381 21-98 (115)
314 1mzb_A Ferric uptake regulatio 34.1 1.2E+02 0.0042 21.8 6.3 56 165-221 9-65 (136)
315 3mwm_A ZUR, putative metal upt 34.0 51 0.0018 24.0 4.2 60 21-81 6-65 (139)
316 2ion_A PDCD4, programmed cell 34.0 1.4E+02 0.0049 22.1 8.8 65 353-418 11-77 (152)
317 3jxi_A Vanilloid receptor-rela 33.4 96 0.0033 25.2 6.5 14 151-164 58-71 (260)
318 2jul_A Calsenilin; EF-hand, ca 33.1 2E+02 0.0067 23.4 12.0 135 99-235 106-255 (256)
319 2w57_A Ferric uptake regulatio 33.1 1.4E+02 0.0047 22.0 6.5 59 165-224 8-67 (150)
320 2p58_C Putative type III secre 32.8 1.2E+02 0.004 20.7 10.5 78 294-381 22-99 (116)
321 4gq2_M Nucleoporin NUP120; bet 32.7 4.2E+02 0.014 27.1 13.4 131 321-470 816-950 (950)
322 2cwy_A Hypothetical protein TT 32.5 43 0.0015 22.4 3.2 51 43-95 15-70 (94)
323 4aez_C MAD3, mitotic spindle c 32.4 1.9E+02 0.0066 23.1 9.1 51 192-242 132-183 (223)
324 2o03_A Probable zinc uptake re 32.3 85 0.0029 22.4 5.1 50 32-81 13-62 (131)
325 2ijq_A Hypothetical protein; s 32.1 1.6E+02 0.0055 22.1 7.3 49 118-166 46-102 (161)
326 3ltm_A Alpha-REP4; protein eng 32.1 1.8E+02 0.0061 22.6 18.5 49 27-79 31-79 (211)
327 4b4t_O 26S proteasome regulato 31.5 2.8E+02 0.0095 24.6 10.2 89 35-123 82-188 (393)
328 1k1a_A B-cell lymphoma 3-encod 31.0 2E+02 0.0067 22.7 10.2 29 35-63 12-40 (241)
329 4ets_A Ferric uptake regulatio 30.7 1.3E+02 0.0044 22.6 6.1 23 285-307 38-60 (162)
330 3bu8_A Telomeric repeat-bindin 30.5 2E+02 0.007 22.8 11.3 22 429-450 122-143 (235)
331 3kea_A K1L; tropism, ANK repea 30.0 2.4E+02 0.0081 23.4 11.9 231 228-481 12-243 (285)
332 2nsz_A Programmed cell death p 28.6 1.6E+02 0.0055 21.0 10.2 65 353-418 9-75 (129)
333 3eyy_A Putative iron uptake re 28.4 1.2E+02 0.004 22.2 5.4 22 190-211 33-54 (145)
334 3mwm_A ZUR, putative metal upt 28.2 40 0.0014 24.5 2.8 45 3-47 22-66 (139)
335 4e2i_2 DNA polymerase alpha su 27.6 1.2E+02 0.0042 19.3 4.4 55 48-104 5-59 (78)
336 2f6m_A Suppressor protein STP2 26.7 1.1E+02 0.0037 18.7 3.9 45 423-468 4-48 (65)
337 2yru_A Steroid receptor RNA ac 26.4 91 0.0031 21.9 4.1 43 50-92 47-89 (118)
338 2etb_A Transient receptor pote 25.9 2.5E+02 0.0087 22.5 7.8 13 153-165 57-69 (256)
339 1k1a_A B-cell lymphoma 3-encod 25.3 2.5E+02 0.0085 22.1 9.9 27 146-172 13-39 (241)
340 2o03_A Probable zinc uptake re 24.3 1.4E+02 0.0048 21.3 5.1 44 145-188 16-59 (131)
341 3eiq_C Programmed cell death p 24.1 3.6E+02 0.012 23.5 15.4 25 247-271 57-81 (358)
342 3lxu_X Tripeptidyl-peptidase 2 23.9 4.6E+02 0.016 28.0 10.1 79 402-483 1265-1343(1354)
343 2yru_A Steroid receptor RNA ac 23.8 1.6E+02 0.0055 20.7 5.0 43 16-58 48-90 (118)
344 3twr_A Tankyrase-2; ankyrin re 23.4 2.2E+02 0.0075 20.7 8.3 19 111-129 12-30 (165)
345 3b2a_A TON_1937, putative unch 23.4 1.9E+02 0.0066 23.5 5.8 30 47-77 94-123 (265)
346 2r9g_A AAA ATPase, central reg 22.5 2.8E+02 0.0096 21.7 8.7 18 152-169 27-44 (204)
347 3pvs_A Replication-associated 22.4 4.4E+02 0.015 23.9 13.1 54 398-451 267-325 (447)
348 2r9g_A AAA ATPase, central reg 21.6 2.9E+02 0.01 21.6 9.0 47 32-79 14-63 (204)
349 3mv2_A Coatomer subunit alpha; 21.2 3.9E+02 0.013 22.9 11.7 27 109-135 212-238 (325)
350 1bd8_A P19INK4D CDK4/6 inhibit 21.1 2.3E+02 0.008 20.3 6.7 19 111-129 6-24 (156)
351 1ug3_A EIF4GI, eukaryotic prot 20.3 4.2E+02 0.014 22.8 8.8 25 282-306 14-38 (339)
No 1
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=1.1e-41 Score=332.29 Aligned_cols=471 Identities=10% Similarity=-0.036 Sum_probs=395.4
Q ss_pred cCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHH
Q 010383 7 LSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVL 86 (512)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 86 (512)
.|....+...+..+. .++...|+.++..|.+.|++++|+.+|++|... .|+..++..++.+|...|++++|...
T Consensus 66 ~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~ 139 (597)
T 2xpi_A 66 DGSFLKERNAQNTDS----LSREDYLRLWRHDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCL 139 (597)
T ss_dssp --------------------CHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred cCccCCCCCccccch----HHHHHHHHHHHHHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHH
Confidence 344445555554433 357889999999999999999999999999864 58889999999999999999999887
Q ss_pred HHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC---------------CCCCcchhHHHHHHHHHh
Q 010383 87 MFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG---------------KSVNEEFACGHMIDSLCR 151 (512)
Q Consensus 87 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~---------------~~~~~~~~~~~l~~~~~~ 151 (512)
+.++.. ..++..+++.++..|.+.|++++|.++|+++... +.+++..+|+.++.+|.+
T Consensus 140 ~~~~~~-------~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 212 (597)
T 2xpi_A 140 LTKEDL-------YNRSSACRYLAAFCLVKLYDWQGALNLLGETNPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTN 212 (597)
T ss_dssp HHHTCG-------GGTCHHHHHHHHHHHHHTTCHHHHHHHHCSSCTTC----------CCCSSCCHHHHHHHHHHHHHHH
T ss_pred HHHHhc-------cccchhHHHHHHHHHHHHhhHHHHHHHHhccCCccccccccccccccccccchhHHHHHHHHHHHHH
Confidence 765531 2466789999999999999999999999964332 223467899999999999
Q ss_pred cCChhhHHHHHHHHHHcCCCCCcchHHH--------------------------------------HHHHHhccCchhHH
Q 010383 152 SGRNHGASRVVYVMRKRGLTPSLVSYNS--------------------------------------IVHGLCKHGGCMRA 193 (512)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g~~p~~~~~~~--------------------------------------l~~~~~~~~~~~~a 193 (512)
.|++++|.+.|+++.+.++. +...+.. ++..|.+.|++++|
T Consensus 213 ~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A 291 (597)
T 2xpi_A 213 LSNFDRAKECYKEALMVDAK-CYEAFDQLVSNHLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRA 291 (597)
T ss_dssp TTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHTTCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhCch-hhHHHHHHHHhhcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHH
Confidence 99999999999999987432 3333332 35567788999999
Q ss_pred HHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc
Q 010383 194 YQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 273 (512)
.++|+++.+. +++..++..++..+.+.|++++|.++|+++...+ +.+..++..++.++...|++++|..+++.+.+.
T Consensus 292 ~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~ 368 (597)
T 2xpi_A 292 EDYLSSINGL--EKSSDLLLCKADTLFVRSRFIDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR 368 (597)
T ss_dssp HHHHHTSTTG--GGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhcC--CchHHHHHHHHHHHHHhcCHHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh
Confidence 9999998865 5889999999999999999999999999998653 457788999999999999999999999999876
Q ss_pred CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh
Q 010383 274 QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353 (512)
Q Consensus 274 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 353 (512)
. +.+..+++.++..|.+.|++++|.++|+++.+.. +.+..+|..++.++.+.|++++|+++|++++... +.+..+
T Consensus 369 ~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~ 443 (597)
T 2xpi_A 369 H-PEKAVTWLAVGIYYLCVNKISEARRYFSKSSTMD--PQFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLP 443 (597)
T ss_dssp C-TTSHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHH
T ss_pred C-cccHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHH
Confidence 5 4478899999999999999999999999998754 5678899999999999999999999999976443 557889
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC----CCCCC--HHhHHHH
Q 010383 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIHD--NYVYAAM 427 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~--~~~~~~l 427 (512)
|..++.+|.+.|++++|..+|+++.+.. +.+..+|..++.+|.+.|++++|.++|+++.+. +..|+ ..+|..+
T Consensus 444 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l 522 (597)
T 2xpi_A 444 YLFLGMQHMQLGNILLANEYLQSSYALF-QYDPLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANL 522 (597)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHH
Confidence 9999999999999999999999999864 567889999999999999999999999999765 55676 7899999
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHhhcc
Q 010383 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLHGN 503 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~~~ 503 (512)
+.+|.+.|++++|.+.++++.+.+ +.+..+|..+..+|.+.|++++|.+.++++.+. .| +...+..|..+|..
T Consensus 523 ~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~~l~~--~p~~~~~~~~l~~~~~~ 596 (597)
T 2xpi_A 523 GHAYRKLKMYDAAIDALNQGLLLS-TNDANVHTAIALVYLHKKIPGLAITHLHESLAI--SPNEIMASDLLKRALEE 596 (597)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHTTC-
T ss_pred HHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHhc--CCCChHHHHHHHHHHhc
Confidence 999999999999999999999875 447899999999999999999999999999984 45 45677777777753
No 2
>2xpi_A Anaphase-promoting complex subunit CUT9; cell cycle, TPR, ubiquitin ligase; 2.60A {Schizosaccharomyces pombe}
Probab=100.00 E-value=7.4e-40 Score=319.50 Aligned_cols=446 Identities=10% Similarity=-0.031 Sum_probs=384.5
Q ss_pred ccccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 2 DQLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 2 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
..|.+.|++++|+.+|+++... .|+..++..++.+|.+.|++++|..+|+++... +++..+++.++.+|.+.|+++
T Consensus 92 ~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~ 167 (597)
T 2xpi_A 92 HDALMQQQYKCAAFVGEKVLDI--TGNPNDAFWLAQVYCCTGDYARAKCLLTKEDLY--NRSSACRYLAAFCLVKLYDWQ 167 (597)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH--HCCHHHHHHHHHHHHHTTCHHHHHHHHHHTCGG--GTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHccCchHHHHHHHHHHhh--CCCchHHHHHHHHHHHcCcHHHHHHHHHHHhcc--ccchhHHHHHHHHHHHHhhHH
Confidence 3577899999999999999965 668889999999999999999999999998653 678999999999999999999
Q ss_pred hHHHHHHHHHHHhhhc-------------CCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHH-----
Q 010383 82 RANVLMFKLWERMKEE-------------EDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACG----- 143 (512)
Q Consensus 82 ~a~~~~~~~~~~~~~~-------------~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~----- 143 (512)
+|..++.+. ++.. .+...+..+++.++..|.+.|++++|.++|+++.+.++. +...+.
T Consensus 168 ~A~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~ 243 (597)
T 2xpi_A 168 GALNLLGET---NPFRKDEKNANKLLMQDGGIKLEASMCYLRGQVYTNLSNFDRAKECYKEALMVDAK-CYEAFDQLVSN 243 (597)
T ss_dssp HHHHHHCSS---CTTC----------CCCSSCCHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHT
T ss_pred HHHHHHhcc---CCccccccccccccccccccchhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCch-hhHHHHHHHHh
Confidence 998876531 1211 123456789999999999999999999999999876532 222222
Q ss_pred ---------------------------------HHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch
Q 010383 144 ---------------------------------HMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190 (512)
Q Consensus 144 ---------------------------------~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 190 (512)
.++..|.+.|++++|.++|+.+.+. .++..+|+.++..+.+.|++
T Consensus 244 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~ 321 (597)
T 2xpi_A 244 HLLTADEEWDLVLKLNYSTYSKEDAAFLRSLYMLKLNKTSHEDELRRAEDYLSSINGL--EKSSDLLLCKADTLFVRSRF 321 (597)
T ss_dssp TCSCHHHHHHHHHHSCTHHHHGGGHHHHHHHHHTTSCTTTTHHHHHHHHHHHHTSTTG--GGCHHHHHHHHHHHHHTTCH
T ss_pred hcccchhHHHHHHhcCCcccccchHHHHHHHHHHHHHHHcCcchHHHHHHHHHHhhcC--CchHHHHHHHHHHHHHhcCH
Confidence 2245566789999999999998876 47899999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHH
Q 010383 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270 (512)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (512)
++|.++|+++.+.+ +.+..++..++.++.+.|++++|.++++.+... .+.+...+..++..|.+.|++++|..+|+.+
T Consensus 322 ~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 399 (597)
T 2xpi_A 322 IDVLAITTKILEID-PYNLDVYPLHLASLHESGEKNKLYLISNDLVDR-HPEKAVTWLAVGIYYLCVNKISEARRYFSKS 399 (597)
T ss_dssp HHHHHHHHHHHHHC-TTCCTTHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTSHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHhh-CcccHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 99999999999865 457889999999999999999999999999853 4566778999999999999999999999999
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC
Q 010383 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG 350 (512)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 350 (512)
.+..+ .+..+|+.++.+|.+.|++++|+++|+++.+.. +.+..++..++.+|.+.|++++|.+.|.+++... +.+
T Consensus 400 ~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~ 474 (597)
T 2xpi_A 400 STMDP-QFGPAWIGFAHSFAIEGEHDQAISAYTTAARLF--QGTHLPYLFLGMQHMQLGNILLANEYLQSSYALF--QYD 474 (597)
T ss_dssp HHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCC
T ss_pred HHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCC
Confidence 88653 368899999999999999999999999999876 6788999999999999999999999999977544 457
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCC--hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010383 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVAD--STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 424 (512)
..+|+.++..|.+.|++++|..+|+++.+. +..|+ ..+|..++.+|.+.|++++|.+.++++.+.+ +.+..+|
T Consensus 475 ~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~~~~~p~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~-p~~~~~~ 553 (597)
T 2xpi_A 475 PLLLNELGVVAFNKSDMQTAINHFQNALLLVKKTQSNEKPWAATWANLGHAYRKLKMYDAAIDALNQGLLLS-TNDANVH 553 (597)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCSGGGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SCCHHHH
T ss_pred hHHHHHHHHHHHHhCCHHHHHHHHHHHHHhhhccccchhhHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHH
Confidence 889999999999999999999999999875 66777 6799999999999999999999999998765 6688999
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..++.+|.+.|++++|.+.|+++.+.. +.+...+..+...|
T Consensus 554 ~~l~~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~l~~~~ 594 (597)
T 2xpi_A 554 TAIALVYLHKKIPGLAITHLHESLAIS-PNEIMASDLLKRAL 594 (597)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTT
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHH
Confidence 999999999999999999999999874 22566666665554
No 3
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.7e-29 Score=230.97 Aligned_cols=382 Identities=12% Similarity=0.054 Sum_probs=297.9
Q ss_pred HHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010383 110 LVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189 (512)
Q Consensus 110 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 189 (512)
+...+.+.|++++|.+.++.+....+ .+...+..+...+...|++++|...++...+.. +.+..+|..+...+.+.|+
T Consensus 5 ~a~~~~~~g~~~~A~~~~~~~~~~~p-~~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~ 82 (388)
T 1w3b_A 5 LAHREYQAGDFEAAERHCMQLWRQEP-DNTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQ 82 (388)
T ss_dssp HHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCC
Confidence 34455666777777777766655432 233455556667777778888877777776653 2356677778888888888
Q ss_pred hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHH
Q 010383 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269 (512)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (512)
+++|.+.|+++.+.. +.+..+|..+..++...|++++|.+.|+++... .+.....+..+...+...|++++|...++.
T Consensus 83 ~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 160 (388)
T 1w3b_A 83 LQEAIEHYRHALRLK-PDFIDGYINLAAALVAAGDMEGAVQAYVSALQY-NPDLYCVRSDLGNLLKALGRLEEAKACYLK 160 (388)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHSCSSHHHHHHHHHHHH-CTTCTHHHHHHHHHHHTTSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 888888888777643 334556777778888888888888888777753 333455666777777778888888888888
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC
Q 010383 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349 (512)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 349 (512)
+.+..+. +..+|..+...+.+.|++++|...|+++.... +.+...+..+...+...|++++|...+.+.+... +.
T Consensus 161 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~ 235 (388)
T 1w3b_A 161 AIETQPN-FAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD--PNFLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PN 235 (388)
T ss_dssp HHHHCTT-CHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TT
T ss_pred HHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cC
Confidence 7776433 57788889999999999999999999998765 5677888899999999999999999998876543 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 429 (512)
+..++..+...+...|++++|...|+++.+.. +.+..++..+..++.+.|++++|...++++.+.. +.+..++..+..
T Consensus 236 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~ 313 (388)
T 1w3b_A 236 HAVVHGNLACVYYEQGLIDLAIDTYRRAIELQ-PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLAN 313 (388)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC-SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHH
Confidence 57788889999999999999999999998864 4567789999999999999999999999998764 677889999999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhccCC
Q 010383 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHGNRG 505 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~~~g 505 (512)
.+...|++++|.+.++++.+.. +.+..++..+...+.+.|++++|.+.++++.+ +.|+ ...|..+..++...|
T Consensus 314 ~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~a~~~lg~~~~~~~ 387 (388)
T 1w3b_A 314 IKREQGNIEEAVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIR--ISPTFADAYSNMGNTLKEMQ 387 (388)
T ss_dssp HHHTTTCHHHHHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHT--TCTTCHHHHHHHHHHHHHTC
T ss_pred HHHHcCCHHHHHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--hCCCCHHHHHhHHHHHHHcc
Confidence 9999999999999999998764 33677899999999999999999999999987 4554 567777777776655
No 4
>1w3b_A UDP-N-acetylglucosamine--peptide N-acetylglucosaminyltransferase 110; OGT, glcnac, nucleoporin, O-linked glycosylation, TPR repeat, protein binding; 2.85A {Homo sapiens} SCOP: a.118.8.1
Probab=100.00 E-value=2.1e-28 Score=225.11 Aligned_cols=377 Identities=12% Similarity=0.008 Sum_probs=182.3
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010383 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (512)
.+.|++++|++.++.+.+..+. +...+..+...+...|++++|...++...+.. +.+..+|..+..++...|++++|.
T Consensus 10 ~~~g~~~~A~~~~~~~~~~~p~-~~~~~~~l~~~~~~~~~~~~a~~~~~~a~~~~-p~~~~~~~~lg~~~~~~g~~~~A~ 87 (388)
T 1w3b_A 10 YQAGDFEAAERHCMQLWRQEPD-NTGVLLLLSSIHFQCRRLDRSAHFSTLAIKQN-PLLAEAYSNLGNVYKERGQLQEAI 87 (388)
T ss_dssp HHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHH
Confidence 3445555555555555544211 33344444445555555555555555544432 234444555555555555555554
Q ss_pred HHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHH
Q 010383 85 VLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYV 164 (512)
Q Consensus 85 ~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 164 (512)
..+.++++ ..+ .+..+|..+..++.+.|++++|.+.|+.
T Consensus 88 ~~~~~al~----------------------------------------~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 126 (388)
T 1w3b_A 88 EHYRHALR----------------------------------------LKP-DFIDGYINLAAALVAAGDMEGAVQAYVS 126 (388)
T ss_dssp HHHHHHHH----------------------------------------HCT-TCHHHHHHHHHHHHHHSCSSHHHHHHHH
T ss_pred HHHHHHHH----------------------------------------cCc-chHHHHHHHHHHHHHcCCHHHHHHHHHH
Confidence 44444432 221 2233455556666666666666666666
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCc
Q 010383 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRT 244 (512)
Q Consensus 165 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~ 244 (512)
+.+..+. +...+..+...+...|++++|.+.|+++.+.. +.+..+|..+...+...|++++|...|+++.... +.
T Consensus 127 al~~~p~-~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~-- 201 (388)
T 1w3b_A 127 ALQYNPD-LYCVRSDLGNLLKALGRLEEAKACYLKAIETQ-PNFAVAWSNLGCVFNAQGEIWLAIHHFEKAVTLD-PN-- 201 (388)
T ss_dssp HHHHCTT-CTHHHHHHHHHHHTTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TT--
T ss_pred HHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CC--
Confidence 6554221 33445555666666666666666666666542 3345566666666666666666666666665421 12
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHH
Q 010383 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFG 324 (512)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 324 (512)
+...+..+...+...|++++|...+++..... +.+..++..+...
T Consensus 202 ---------------------------------~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~ 246 (388)
T 1w3b_A 202 ---------------------------------FLDAYINLGNVLKEARIFDRAVAAYLRALSLS--PNHAVVHGNLACV 246 (388)
T ss_dssp ---------------------------------CHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHC--TTCHHHHHHHHHH
T ss_pred ---------------------------------cHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC--cCCHHHHHHHHHH
Confidence 22333333444444444444444444443322 2233444444444
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010383 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
+...|++++|...|.+++... +.++.++..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++
T Consensus 247 ~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 323 (388)
T 1w3b_A 247 YYEQGLIDLAIDTYRRAIELQ--PHFPDAYCNLANALKEKGSVAEAEDCYNTALRLC-PTHADSLNNLANIKREQGNIEE 323 (388)
T ss_dssp HHHTTCHHHHHHHHHHHHHTC--SSCHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHH
T ss_pred HHHcCCHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHcCCHHH
Confidence 444444444444444433221 1223344444444444555555555555444432 3344445555555555555555
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010383 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 469 (512)
|...++++.+.. +.+..++..++.++.+.|++++|.+.|+++.+.. +.+...|..+...+...
T Consensus 324 A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~a~~~lg~~~~~~ 386 (388)
T 1w3b_A 324 AVRLYRKALEVF-PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSNMGNTLKEM 386 (388)
T ss_dssp HHHHHHHHTTSC-TTCHHHHHHHHHHHHTTTCCHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHT
T ss_pred HHHHHHHHHhcC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC-CCCHHHHHhHHHHHHHc
Confidence 555555554432 3334455555555555555555555555555432 11334444444444443
No 5
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=100.00 E-value=2.9e-31 Score=247.09 Aligned_cols=204 Identities=14% Similarity=0.136 Sum_probs=147.5
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCC---------HHH
Q 010383 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR---------VEE 369 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~ 369 (512)
..+.+.+.+.+........++.+|.+|++.|++++|+++|++ |...|+.||..+|+.||.+|++.+. ++.
T Consensus 10 e~L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~-M~~~Gv~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~ 88 (501)
T 4g26_A 10 ENLSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDE-ARRNGVQLSQYHYNVLLYVCSLAEAATESSPNPGLSR 88 (501)
T ss_dssp --------------CHHHHHHHHHHHTTTSCCHHHHHHHHHH-HHHHTCCCCHHHHHHHHHHHTTCCCCSSSSCCHHHHH
T ss_pred HHHHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHH-HHHcCCCCCHhHHHHHHHHHHhCCchhhhhhcchHHH
Confidence 334444444333222233456666666677777777766666 3456667777777777766665443 577
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
|.++|++|.+.|+.||..||+.||.+|++.|++++|.++|++|.+.|+.||..+|+++|.+|++.|++++|.++|++|.+
T Consensus 89 A~~lf~~M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~ 168 (501)
T 4g26_A 89 GFDIFKQMIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVE 168 (501)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHh
Confidence 88888888888888888888888888888888888888888888888888888888888888888888888888888888
Q ss_pred CCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhcc
Q 010383 450 SGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGN 503 (512)
Q Consensus 450 ~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~ 503 (512)
.|+.||..+|++|+.+|++.|++++|.+++++|.+.|..|+..||+.++..|+.
T Consensus 169 ~G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s 222 (501)
T 4g26_A 169 SEVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKS 222 (501)
T ss_dssp TTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHS
T ss_pred cCCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhc
Confidence 888888888888888888888888888888888888888888888888777664
No 6
>4g26_A Pentatricopeptide repeat-containing protein AT2G3 mitochondrial; metallonuclease, prorp, ribonuclease, PIN, tRNA processing, NYN domain; 1.75A {Arabidopsis thaliana} PDB: 4g23_A* 4g25_A 4g24_A
Probab=99.97 E-value=6.9e-30 Score=237.82 Aligned_cols=202 Identities=14% Similarity=0.132 Sum_probs=160.6
Q ss_pred HHHHHHhcCCCCCh-hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC---------HHHHH
Q 010383 266 VLVFMLQTQCQPDV-ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR---------IQEAL 335 (512)
Q Consensus 266 ~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---------~~~a~ 335 (512)
+.+.+.+.+..+.+ ..++.+|.+|++.|++++|+++|++|.+.+. .||..+|+.++.+|.+.+. .+.|.
T Consensus 12 L~~~~~~k~~~~spe~~l~~~id~c~k~G~~~~A~~lf~~M~~~Gv-~pd~~tyn~Li~~c~~~~~~~~~~~~~~l~~A~ 90 (501)
T 4g26_A 12 LSRKAKKKAIQQSPEALLKQKLDMCSKKGDVLEALRLYDEARRNGV-QLSQYHYNVLLYVCSLAEAATESSPNPGLSRGF 90 (501)
T ss_dssp ------------CHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHHTC-CCCHHHHHHHHHHHTTCCCCSSSSCCHHHHHHH
T ss_pred HHHHHHHhcccCCCHHHHHHHHHHHHhCCCHHHHHHHHHHHHHcCC-CCCHhHHHHHHHHHHhCCchhhhhhcchHHHHH
Confidence 33444444443332 3466777777777777777777777777664 7777777777777765543 67888
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010383 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 415 (512)
++|.+ |...|+.||..+|+.+|.+|++.|++++|..+|++|.+.|+.||..+|+.+|.+|++.|++++|.++|++|.+.
T Consensus 91 ~lf~~-M~~~G~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~g~~Pd~~tyn~lI~~~~~~g~~~~A~~l~~~M~~~ 169 (501)
T 4g26_A 91 DIFKQ-MIVDKVVPNEATFTNGARLAVAKDDPEMAFDMVKQMKAFGIQPRLRSYGPALFGFCRKGDADKAYEVDAHMVES 169 (501)
T ss_dssp HHHHH-HHHTTCCCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHHH-HHHhCCCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHcCCCCccceehHHHHHHHHCCCHHHHHHHHHHHHhc
Confidence 88887 45788899999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc
Q 010383 416 SNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL 469 (512)
Q Consensus 416 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~ 469 (512)
|+.||..+|++|+.+|++.|+.++|.+++++|.+.|..|+..||+.++..|...
T Consensus 170 G~~Pd~~ty~~Li~~~~~~g~~d~A~~ll~~Mr~~g~~ps~~T~~~l~~~F~s~ 223 (501)
T 4g26_A 170 EVVPEEPELAALLKVSMDTKNADKVYKTLQRLRDLVRQVSKSTFDMIEEWFKSE 223 (501)
T ss_dssp TCCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTSSBCHHHHHHHHHHHHSH
T ss_pred CCCCCHHHHHHHHHHHhhCCCHHHHHHHHHHHHHhCCCcCHHHHHHHHHHHhcC
Confidence 999999999999999999999999999999999999999999999988888753
No 7
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=1.4e-25 Score=214.64 Aligned_cols=431 Identities=8% Similarity=-0.039 Sum_probs=236.1
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
.+.+.|++++|+..|+++.+.+ |+..+|..+..++.+.|++++|+..|+++.+.+ +.+..+|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~ 91 (514)
T 2gw1_A 15 QFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELK-PDYSKVLLRRASANEGLGKFAD 91 (514)
T ss_dssp HHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccC-hHHHHHHHHHHHHHHHHhhHHH
Confidence 3456677777777777777663 566677777777777777777777777776643 2345566677777777777777
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHH
Q 010383 83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVV 162 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 162 (512)
|...+.+++...+ ++......++..+........+.+.+..+......|+......................+.
T Consensus 92 A~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 165 (514)
T 2gw1_A 92 AMFDLSVLSLNGD------FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQENLPSVTSMA 165 (514)
T ss_dssp HHHHHHHHHHSSS------CCGGGTHHHHHHHHHHHHHHHHTTC---------------------------CCCCHHHHH
T ss_pred HHHHHHHHHhcCC------CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhccCCchhHHHH
Confidence 7776666554321 1222222333333332222222222222211111111111100000011111111111111
Q ss_pred HHHHHcCCC--------C-CcchHHHHHHHHhc---cCchhHHHHHHHHHHh-----CCC--------CCchhhHHHHHH
Q 010383 163 YVMRKRGLT--------P-SLVSYNSIVHGLCK---HGGCMRAYQLLEEGIQ-----FGY--------LPSEHTYKVLVE 217 (512)
Q Consensus 163 ~~~~~~g~~--------p-~~~~~~~l~~~~~~---~~~~~~a~~~~~~~~~-----~~~--------~~~~~~~~~l~~ 217 (512)
..+...... | +...+......+.. .|++++|...++++.+ ... +.+..++..+..
T Consensus 166 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 245 (514)
T 2gw1_A 166 SFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEKLAISLEHTGI 245 (514)
T ss_dssp HHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHHHH
T ss_pred HHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChHHHHHHHHHHH
Confidence 111111111 1 12333333333333 6777777777777766 211 123445666667
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHH
Q 010383 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEE 297 (512)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 297 (512)
.+...|++++|...++.+...... ...+..+...+...|++++|...++.+.+.... +...+..+...+...|++++
T Consensus 246 ~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~ 322 (514)
T 2gw1_A 246 FKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLDSN-NSSVYYHRGQMNFILQNYDQ 322 (514)
T ss_dssp HHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTCTT-CTHHHHHHHHHHHHTTCTTH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcCcC-CHHHHHHHHHHHHHhCCHHH
Confidence 777777777777777776654322 556666666677777777777777766655432 45566666667777777777
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010383 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377 (512)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 377 (512)
|...+++..... +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...++++
T Consensus 323 A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 398 (514)
T 2gw1_A 323 AGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF--PEAPEVPNFFAEILTDKNDFDKALKQYDLA 398 (514)
T ss_dssp HHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc--ccCHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 777777766654 3455566666666777777777777776655433 334456666666667777777777777666
Q ss_pred HhCCC-CCC----hHhHHHHHHHHHh---cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 378 LGIGV-VAD----STTYAIVIDGLCE---SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 378 ~~~~~-~~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.+... .++ ...+..+..++.. .|++++|...++++.... +.+..++..+..++...|++++|...|++..+
T Consensus 399 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 477 (514)
T 2gw1_A 399 IELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDEAITLFEESAD 477 (514)
T ss_dssp HHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHHHHHHHHHHHH
Confidence 55321 111 2256666666666 677777777777666543 44555666666677777777777777776666
Q ss_pred C
Q 010383 450 S 450 (512)
Q Consensus 450 ~ 450 (512)
.
T Consensus 478 ~ 478 (514)
T 2gw1_A 478 L 478 (514)
T ss_dssp H
T ss_pred h
Confidence 5
No 8
>2gw1_A Mitochondrial precursor proteins import receptor; TPR, protein transport; 3.00A {Saccharomyces cerevisiae}
Probab=99.96 E-value=3.4e-25 Score=211.97 Aligned_cols=446 Identities=10% Similarity=-0.038 Sum_probs=329.3
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010383 28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107 (512)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (512)
....+......+.+.|++++|+..|+++.+.+ |+..+|..+..++...|++++|...+.++++..| .+..++
T Consensus 5 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p------~~~~~~ 76 (514)
T 2gw1_A 5 YALALKDKGNQFFRNKKYDDAIKYYNWALELK--EDPVFYSNLSACYVSVGDLKKVVEMSTKALELKP------DYSKVL 76 (514)
T ss_dssp HHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCS------CCHHHH
T ss_pred hHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC--ccHHHHHhHHHHHHHHhhHHHHHHHHHHHhccCh------HHHHHH
Confidence 35578888999999999999999999999874 7999999999999999999999999988886532 245688
Q ss_pred HHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc
Q 010383 108 ANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH 187 (512)
Q Consensus 108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~ 187 (512)
..+..++...|++++|...|+++...++ ++......++..+........+.+.+..+...+..|+...+..-.......
T Consensus 77 ~~l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~ 155 (514)
T 2gw1_A 77 LRRASANEGLGKFADAMFDLSVLSLNGD-FNDASIEPMLERNLNKQAMSKLKEKFGDIDTATATPTELSTQPAKERKDKQ 155 (514)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHSSS-CCGGGTHHHHHHHHHHHHHHHHTTC--------------------------
T ss_pred HHHHHHHHHHhhHHHHHHHHHHHHhcCC-CccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhccCChhhHHHhhc
Confidence 8899999999999999999999877664 334444445554444433333333333332222222221111111001111
Q ss_pred CchhHHHHHHHHHHhCCC---------CCchhhHHHHHHHHhc---cCCHHHHHHHHHHHHh-----CCCC--------C
Q 010383 188 GGCMRAYQLLEEGIQFGY---------LPSEHTYKVLVEGLCG---ESDLEKARKVLQFMLS-----KKDV--------D 242 (512)
Q Consensus 188 ~~~~~a~~~~~~~~~~~~---------~~~~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~-----~~~~--------~ 242 (512)
........+...+..... +.+...+......+.. .|+++.|..+++++.. .... .
T Consensus 156 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 235 (514)
T 2gw1_A 156 ENLPSVTSMASFFGIFKPELTFANYDESNEADKELMNGLSNLYKRSPESYDKADESFTKAARLFEEQLDKNNEDEKLKEK 235 (514)
T ss_dssp -CCCCHHHHHHHHTTSCCCCCCSSCCSSCHHHHHHHHHHHHHSSCCTTHHHHHHHHHHHHHHHHHHHTTTSTTCHHHHHH
T ss_pred cCCchhHHHHHHHhhcCHHHHHHHhcCCcHHHHHHHHHHHHHHhhhhccHHHHHHHHHHHHHHhhhhhccCccccccChH
Confidence 111111111111111111 1224445445554444 8999999999999987 3112 2
Q ss_pred CcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHH
Q 010383 243 RTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTII 322 (512)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 322 (512)
....+..+...+...|++++|...++.+.+..+. ...+..+..++...|++++|...++++.... +.+...+..+.
T Consensus 236 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~~~--~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~ 311 (514)
T 2gw1_A 236 LAISLEHTGIFKFLKNDPLGAHEDIKKAIELFPR--VNSYIYMALIMADRNDSTEYYNYFDKALKLD--SNNSSVYYHRG 311 (514)
T ss_dssp HHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHCCC--HHHHHHHHHHHHTSSCCTTGGGHHHHHHTTC--TTCTHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHHhhCcc--HHHHHHHHHHHHHCCCHHHHHHHHHHHhhcC--cCCHHHHHHHH
Confidence 2456778888999999999999999999988654 8888999999999999999999999999875 56778899999
Q ss_pred HHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH
Q 010383 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL 402 (512)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 402 (512)
..+...|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++
T Consensus 312 ~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~ 388 (514)
T 2gw1_A 312 QMNFILQNYDQAGKDFDKAKELD--PENIFPYIQLACLAYRENKFDDCETLFSEAKRKF-PEAPEVPNFFAEILTDKNDF 388 (514)
T ss_dssp HHHHHTTCTTHHHHHHHHHHHTC--SSCSHHHHHHHHHTTTTTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhCCHHHHHHHHHHHHHhC--hhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHc-ccCHHHHHHHHHHHHHCCCH
Confidence 99999999999999999976543 4456788889999999999999999999998864 55678899999999999999
Q ss_pred HHHHHHHHHhhcCCCC-CC----HHhHHHHHHHHHh---cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010383 403 DEAKRFWDDIVWPSNI-HD----NYVYAAMIKGLCR---SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474 (512)
Q Consensus 403 ~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~---~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 474 (512)
++|...++++.+.... ++ ...+..+...+.. .|++++|...++++.+.. +.+..++..+...+.+.|++++
T Consensus 389 ~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~ 467 (514)
T 2gw1_A 389 DKALKQYDLAIELENKLDGIYVGIAPLVGKATLLTRNPTVENFIEATNLLEKASKLD-PRSEQAKIGLAQMKLQQEDIDE 467 (514)
T ss_dssp HHHHHHHHHHHHHHHTSSSCSSCSHHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHhhhccchHHHHHHHHHHHHHHHhhhhhcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHhcCHHH
Confidence 9999999998753211 11 3488999999999 999999999999998865 3367788999999999999999
Q ss_pred HHHHHHHHHHCCCCCChH
Q 010383 475 AYQILREMRKNGLNPDAV 492 (512)
Q Consensus 475 a~~~~~~m~~~~~~p~~~ 492 (512)
|.+.++++.+ +.|+..
T Consensus 468 A~~~~~~a~~--~~~~~~ 483 (514)
T 2gw1_A 468 AITLFEESAD--LARTME 483 (514)
T ss_dssp HHHHHHHHHH--HCSSHH
T ss_pred HHHHHHHHHH--hccccH
Confidence 9999999998 456543
No 9
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=7.9e-24 Score=203.60 Aligned_cols=433 Identities=11% Similarity=0.027 Sum_probs=219.0
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHH
Q 010383 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFA 108 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~ 108 (512)
...+..+...+.+.|++++|+..|+++.+.. +.++.+|..+..++...|++++|...+.++++..|. +..++.
T Consensus 25 a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~p~------~~~~~~ 97 (537)
T 3fp2_A 25 AVQLKNRGNHFFTAKNFNEAIKYYQYAIELD-PNEPVFYSNISACYISTGDLEKVIEFTTKALEIKPD------HSKALL 97 (537)
T ss_dssp HHHHHHHHHHHHHTTCCC-CHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT------CHHHHH
T ss_pred HHHHHHHHHHHHHhccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcCCc------hHHHHH
Confidence 4567777788888888888888888887753 346677777888888888888888887777664322 356677
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCC--CCCcchHHHHHHHHhc
Q 010383 109 NLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGL--TPSLVSYNSIVHGLCK 186 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~--~p~~~~~~~l~~~~~~ 186 (512)
.+...+...|++++|...|+.+..... +. ...+..+...+....|...++.+....+ .+........+..+..
T Consensus 98 ~la~~~~~~g~~~~A~~~~~~~~~~~~-~~----~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~ 172 (537)
T 3fp2_A 98 RRASANESLGNFTDAMFDLSVLSLNGD-FD----GASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFG 172 (537)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHC----------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHhcCCC-CC----hHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHH
Confidence 778888888888888888864432211 11 1123344445555667777777654310 0011111112222222
Q ss_pred cCchhHHHHHHHHHHhCCCCCc-hhhHHHHHHHHhc--------cCCHHHHHHHHHHHHhCCCCCCcc-------cHHHH
Q 010383 187 HGGCMRAYQLLEEGIQFGYLPS-EHTYKVLVEGLCG--------ESDLEKARKVLQFMLSKKDVDRTR-------ICNIY 250 (512)
Q Consensus 187 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~-------~~~~l 250 (512)
..+.+.+...+...... .+. ......+...+.. .|++++|..+++.+.+.. +.+.. .+..+
T Consensus 173 ~~~~~~~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~ 249 (537)
T 3fp2_A 173 IFDSHLEVSSVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYT 249 (537)
T ss_dssp TSCHHHHHHTSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHH
T ss_pred hcChHHHHHHHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHH
Confidence 33333332222211110 111 0111122211111 124555555555554321 11111 23334
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010383 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
...+...|++++|...+....+.. |+...+..+...+...|++++|...++++.... +.+..++..+...+...|+
T Consensus 250 g~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~ 325 (537)
T 3fp2_A 250 GIFHFLKNNLLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLN--PEYPPTYYHRGQMYFILQD 325 (537)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHhcccHHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccC--CCCHHHHHHHHHHHHhcCC
Confidence 444555555555555555555543 224455555555555555555555555555443 3445555555555555555
Q ss_pred HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHH
Q 010383 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWD 410 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 410 (512)
+++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++
T Consensus 326 ~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~ 402 (537)
T 3fp2_A 326 YKNAKEDFQKAQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF-PTLPEVPTFFAEILTDRGDFDTAIKQYD 402 (537)
T ss_dssp HHHHHHHHHHHHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhCCHHHHHHHHH
Confidence 555555555544332 2233445555555555566666666555555542 3344455555555555566666555555
Q ss_pred HhhcCC-----CCCCHHhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHH
Q 010383 411 DIVWPS-----NIHDNYVYAAMIKGLCRS----------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREA 475 (512)
Q Consensus 411 ~~~~~~-----~~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a 475 (512)
++.+.. .......+..+...+... |++++|...++++.+.. +.+...+..+...+.+.|++++|
T Consensus 403 ~a~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A 481 (537)
T 3fp2_A 403 IAKRLEEVQEKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEA 481 (537)
T ss_dssp HHHHHHHHCSSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHcCCcchhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHH
Confidence 554321 001111233333444444 55556666665555543 22444555555555556666666
Q ss_pred HHHHHHHHH
Q 010383 476 YQILREMRK 484 (512)
Q Consensus 476 ~~~~~~m~~ 484 (512)
.+.++++.+
T Consensus 482 ~~~~~~al~ 490 (537)
T 3fp2_A 482 IELFEDSAI 490 (537)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 665555554
No 10
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2e-23 Score=196.11 Aligned_cols=302 Identities=13% Similarity=0.073 Sum_probs=150.4
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 010383 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184 (512)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 184 (512)
..+..++..+.+.|++++|..+|+++....+ .+..++..+..++...|++++|...|+.+.+.+.. +..++..+..++
T Consensus 27 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~ 104 (450)
T 2y4t_A 27 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLKMD-FTAARLQRGHLL 104 (450)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCCC-cHHHHHHHHHHH
Confidence 3444555555555666666666555544322 34455566666666666666666666666655322 445666666666
Q ss_pred hccCchhHHHHHHHHHHhCCCCCch---hhHHHH------------HHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010383 185 CKHGGCMRAYQLLEEGIQFGYLPSE---HTYKVL------------VEGLCGESDLEKARKVLQFMLSKKDVDRTRICNI 249 (512)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 249 (512)
...|++++|.+.|+++.+.. +.+. ..+..+ ...+...|++++|...++.+... .+.+...+..
T Consensus 105 ~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~-~~~~~~~~~~ 182 (450)
T 2y4t_A 105 LKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEV-CVWDAELREL 182 (450)
T ss_dssp HHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH-CTTCHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh-CCCChHHHHH
Confidence 66666666666666666542 2222 333333 23355566666666666665542 2233444555
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH--------
Q 010383 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI-------- 321 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------- 321 (512)
+...+...|++++|...+..+.+... .+..++..+..++...|++++|+..|+++.... +.+...+..+
T Consensus 183 l~~~~~~~g~~~~A~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~~~~~ 259 (450)
T 2y4t_A 183 RAECFIKEGEPRKAISDLKAASKLKN-DNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVKKLNK 259 (450)
T ss_dssp HHHHHHHTTCGGGGHHHHHHHHHHHC-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHHHHHH
Confidence 55555555555555555555554432 245555556666666666666666666555433 2233333322
Q ss_pred ----HHHHhhcCCHHHHHHHHHhhcccCCCCCC--hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010383 322 ----IFGLLNVGRIQEALNLLYQVMPQRGYSPG--IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395 (512)
Q Consensus 322 ----~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (512)
...+...|++++|...|.+++......|. ...+..+...+.+.|++++|...++++.+.. +.+...+..+..+
T Consensus 260 ~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~ 338 (450)
T 2y4t_A 260 LIESAEELIRDGRYTDATSKYESVMKTEPSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNALKDRAEA 338 (450)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHhcCCcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHHHHHHHH
Confidence 34444444444444444443322111000 1233444444444444444444444444321 2233444444444
Q ss_pred HHhcCCHHHHHHHHHHhhc
Q 010383 396 LCESNQLDEAKRFWDDIVW 414 (512)
Q Consensus 396 ~~~~g~~~~a~~~~~~~~~ 414 (512)
|...|++++|...++++.+
T Consensus 339 ~~~~~~~~~A~~~~~~al~ 357 (450)
T 2y4t_A 339 YLIEEMYDEAIQDYETAQE 357 (450)
T ss_dssp HHHTTCHHHHHHHHHHHHT
T ss_pred HHHhcCHHHHHHHHHHHHH
Confidence 4444444444444444443
No 11
>3fp2_A TPR repeat-containing protein YHR117W; TOM71, mitochondria translocation, allosteric REG phosphoprotein, TPR repeat, ATP-binding; 1.98A {Saccharomyces cerevisiae} PDB: 3fp3_A 3fp4_A 3lca_A
Probab=99.94 E-value=3.2e-23 Score=199.38 Aligned_cols=426 Identities=8% Similarity=-0.016 Sum_probs=316.2
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
.+.+.|++++|+..|+++.+..+. ++.+|..+..++.+.|++++|+..|+++.+.+ +.+..++..+..++...|++++
T Consensus 34 ~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~ 111 (537)
T 3fp2_A 34 HFFTAKNFNEAIKYYQYAIELDPN-EPVFYSNISACYISTGDLEKVIEFTTKALEIK-PDHSKALLRRASANESLGNFTD 111 (537)
T ss_dssp HHHHTTCCC-CHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhccHHHHHHHHHHHHhhCCC-CcHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CchHHHHHHHHHHHHHcCCHHH
Confidence 467899999999999999998543 78899999999999999999999999998864 3467789999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC--CCcchhHHHHHHHHHhcCChhhHHH
Q 010383 83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS--VNEEFACGHMIDSLCRSGRNHGASR 160 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~ 160 (512)
|...+. .+...+ + .....+..+...+...+|...++.+....+ .+........+..+....+.+.+..
T Consensus 112 A~~~~~-~~~~~~-------~--~~~~~~~~~~~~~~~~~a~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 181 (537)
T 3fp2_A 112 AMFDLS-VLSLNG-------D--FDGASIEPMLERNLNKQAMKVLNENLSKDEGRGSQVLPSNTSLASFFGIFDSHLEVS 181 (537)
T ss_dssp HHHHHH-HHC--------------------CHHHHHHHHHHHHHHHHHCC-------CCCCCHHHHHHHHHTSCHHHHHH
T ss_pred HHHHHH-HHhcCC-------C--CChHHHHHHHHHHHHHHHHHHHHHHHHhCccccccccchHhHHHHHHHhcChHHHHH
Confidence 998874 332211 1 111234455566667889999988866421 1111122334555555666555544
Q ss_pred HHHHHHHcCCCCCcc-hHHHHHHHHhc--------cCchhHHHHHHHHHHhCCCCCc-------hhhHHHHHHHHhccCC
Q 010383 161 VVYVMRKRGLTPSLV-SYNSIVHGLCK--------HGGCMRAYQLLEEGIQFGYLPS-------EHTYKVLVEGLCGESD 224 (512)
Q Consensus 161 ~~~~~~~~g~~p~~~-~~~~l~~~~~~--------~~~~~~a~~~~~~~~~~~~~~~-------~~~~~~l~~~~~~~g~ 224 (512)
.+...... .+... ....+...+.. .|++++|..+++++.+.. +.+ ..++..+...+...|+
T Consensus 182 ~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~~a~~~~~~A~~~~~~~l~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~ 258 (537)
T 3fp2_A 182 SVNTSSNY--DTAYALLSDALQRLYSATDEGYLVANDLLTKSTDMYHSLLSAN-TVDDPLRENAALALCYTGIFHFLKNN 258 (537)
T ss_dssp TSCCCCSS--CSSHHHHHHHHHHHHTCSHHHHHHHHHHHHHHHHHHHHHHC---CCCHHHHHHHHHHHHHHHHHHHHTTC
T ss_pred HHhhcccc--ccHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHHC-CCcchhhHHHHHHHHHHHHHHHhccc
Confidence 33322211 11111 22233333222 247889999999988653 222 2356677788889999
Q ss_pred HHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 225 LEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLND 304 (512)
Q Consensus 225 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 304 (512)
+++|...++.+.... |+...+..+...+...|++++|...+....+..+. +..++..+...+...|++++|...+++
T Consensus 259 ~~~A~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~ 335 (537)
T 3fp2_A 259 LLDAQVLLQESINLH--PTPNSYIFLALTLADKENSQEFFKFFQKAVDLNPE-YPPTYYHRGQMYFILQDYKNAKEDFQK 335 (537)
T ss_dssp HHHHHHHHHHHHHHC--CCHHHHHHHHHHTCCSSCCHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC--CCchHHHHHHHHHHHhcCHHHHHHHHHHHhccCCC-CHHHHHHHHHHHHhcCCHHHHHHHHHH
Confidence 999999999998753 33678888889999999999999999999887643 678899999999999999999999999
Q ss_pred HhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--
Q 010383 305 MVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV-- 382 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 382 (512)
..... +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...|+++.+...
T Consensus 336 a~~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~ 411 (537)
T 3fp2_A 336 AQSLN--PENVYPYIQLACLLYKQGKFTESEAFFNETKLKF--PTLPEVPTFFAEILTDRGDFDTAIKQYDIAKRLEEVQ 411 (537)
T ss_dssp HHHHC--TTCSHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHC
T ss_pred HHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhCCHHHHHHHHHHHHHcCCcc
Confidence 98865 5567888999999999999999999999977654 45567888899999999999999999999876421
Q ss_pred ---CCChHhHHHHHHHHHhc----------CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 383 ---VADSTTYAIVIDGLCES----------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 383 ---~~~~~~~~~l~~~~~~~----------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
......+..+..++... |++++|...++++.+.. +.+..++..+..+|...|++++|.+.|++..+
T Consensus 412 ~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~ 490 (537)
T 3fp2_A 412 EKIHVGIGPLIGKATILARQSSQDPTQLDEEKFNAAIKLLTKACELD-PRSEQAKIGLAQLKLQMEKIDEAIELFEDSAI 490 (537)
T ss_dssp SSCSSTTHHHHHHHHHHHHHHTC----CCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hhhHHHHHHHHHHHHHHHHHhhccchhhhHhHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 11122244556777777 99999999999998765 56778899999999999999999999999998
Q ss_pred CC
Q 010383 450 SG 451 (512)
Q Consensus 450 ~~ 451 (512)
..
T Consensus 491 ~~ 492 (537)
T 3fp2_A 491 LA 492 (537)
T ss_dssp HC
T ss_pred hC
Confidence 64
No 12
>2y4t_A DNAJ homolog subfamily C member 3; chaperone, endoplasmic reticulum, protein folding, tetratricopeptiderepeat, J domain, unfolded protein respons; 3.00A {Homo sapiens} PDB: 2y4u_A
Probab=99.94 E-value=2.1e-23 Score=195.97 Aligned_cols=357 Identities=12% Similarity=0.038 Sum_probs=289.3
Q ss_pred CcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHH
Q 010383 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216 (512)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (512)
.+...+..+...+.+.|++++|...|+.+.+... .+..+|..+..++...|++++|...|+++.+.+ +.+..++..+.
T Consensus 24 ~~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~ 101 (450)
T 2y4t_A 24 ADVEKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIQLK-MDFTAARLQRG 101 (450)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-CCcHHHHHHHH
Confidence 4567788899999999999999999999988643 367899999999999999999999999999875 55678999999
Q ss_pred HHHhccCCHHHHHHHHHHHHhCCCCCCc---ccHHHH------------HHHHHccCChhhHHHHHHHHHhcCCCCChhh
Q 010383 217 EGLCGESDLEKARKVLQFMLSKKDVDRT---RICNIY------------LRALCLIKNPTELLNVLVFMLQTQCQPDVIT 281 (512)
Q Consensus 217 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l------------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~ 281 (512)
.++...|++++|.+.|+.+.... +.+. ..+..+ ...+...|++++|...++.+.+..+ .+...
T Consensus 102 ~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~ 179 (450)
T 2y4t_A 102 HLLLKQGKLDEAEDDFKKVLKSN-PSENEEKEAQSQLIKSDEMQRLRSQALNAFGSGDYTAAIAFLDKILEVCV-WDAEL 179 (450)
T ss_dssp HHHHHTTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHhcC-CCChhhHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHH
Confidence 99999999999999999998643 2233 444444 4458889999999999999998754 37788
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH----
Q 010383 282 LNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV---- 357 (512)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l---- 357 (512)
+..+..+|.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...|.+++... +.+...+..+
T Consensus 180 ~~~l~~~~~~~g~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~--p~~~~~~~~~~~~~ 255 (450)
T 2y4t_A 180 RELRAECFIKEGEPRKAISDLKAASKLK--NDNTEAFYKISTLYYQLGDHELSLSEVRECLKLD--QDHKRCFAHYKQVK 255 (450)
T ss_dssp HHHHHHHHHHTTCGGGGHHHHHHHHHHH--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CChHHHHHHHHHHH
Confidence 9999999999999999999999998765 6778999999999999999999999999977443 2333444444
Q ss_pred --------HHHHHccCCHHHHHHHHHHHHhCCCCCC-----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010383 358 --------LRGLFRLRRVEEAKEVFNCMLGIGVVAD-----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424 (512)
Q Consensus 358 --------~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 424 (512)
...+.+.|++++|...|+++.+.. |+ ...+..+..++.+.|++++|...++++.+.. +.+..+|
T Consensus 256 ~~~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~ 332 (450)
T 2y4t_A 256 KLNKLIESAEELIRDGRYTDATSKYESVMKTE--PSIAEYTVRSKERICHCFSKDEKPVEAIRVCSEVLQME-PDNVNAL 332 (450)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CSSHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CcchHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cccHHHH
Confidence 788999999999999999998853 44 3478889999999999999999999998754 5578899
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH------------HHhcC-----CHHHHHHHHHHH-HHCC
Q 010383 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG------------ACKLS-----MKREAYQILREM-RKNG 486 (512)
Q Consensus 425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~------------~~~~g-----~~~~a~~~~~~m-~~~~ 486 (512)
..++.+|...|++++|...++++.+..+ -+...+..+..+ |...| +.+++.+.++++ .+
T Consensus 333 ~~l~~~~~~~~~~~~A~~~~~~al~~~p-~~~~~~~~l~~~~~~~~~~~~~~~y~~lg~~~~~~~~~~~~~y~~~~l~-- 409 (450)
T 2y4t_A 333 KDRAEAYLIEEMYDEAIQDYETAQEHNE-NDQQIREGLEKAQRLLKQSQKRDYYKILGVKRNAKKQEIIKAYRKLALQ-- 409 (450)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHHHHHHSCCSGGGSCSSTTCCTTHHHHHHHHHHHH--
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhCc-chHHHHHHHHHHHHHhhcccchhHHHHhCCCccCCHHHHHHHHHHHHHH--
Confidence 9999999999999999999999998642 245666666533 33344 566778888874 33
Q ss_pred CCCCh-----------HHHHHHHHhhccCCCC
Q 010383 487 LNPDA-----------VTWRILDKLHGNRGND 507 (512)
Q Consensus 487 ~~p~~-----------~~~~~l~~~~~~~g~~ 507 (512)
..||. ..+..+..+|...|+.
T Consensus 410 ~~pd~~~~~~~~~~a~~~~~~i~~ay~~L~d~ 441 (450)
T 2y4t_A 410 WHPDNFQNEEEKKKAEKKFIDIAAAKEVLSDP 441 (450)
T ss_dssp SCGGGCCSHHHHHHHHHHHHHHHHHHHHSSGG
T ss_pred hCCCCCCCchHHHHHHHHHHHHHHHHHHhCCH
Confidence 34432 2667777887777664
No 13
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.90 E-value=6.2e-20 Score=166.69 Aligned_cols=328 Identities=12% Similarity=0.055 Sum_probs=197.8
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010383 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220 (512)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (512)
.+..+...+...|++++|...|+.+.+..+. +..++..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 5 ~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 82 (359)
T 3ieg_A 5 KHLELGKKLLAAGQLADALSQFHAAVDGDPD-NYIAYYRRATVFLAMGKSKAALPDLTKVIALK-MDFTAARLQRGHLLL 82 (359)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHhhCcc-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCcchHHHHHHHHHH
Confidence 4445555666666666666666666654322 45566666666666666666666666666543 334556666666666
Q ss_pred ccCCHHHHHHHHHHHHhCCCC--CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH
Q 010383 221 GESDLEKARKVLQFMLSKKDV--DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA 298 (512)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 298 (512)
..|++++|...++.+...... .+...+..+.... ....+..+...+...|++++|
T Consensus 83 ~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~l~~~~-----------------------~~~~~~~~a~~~~~~~~~~~A 139 (359)
T 3ieg_A 83 KQGKLDEAEDDFKKVLKSNPSEQEEKEAESQLVKAD-----------------------EMQRLRSQALDAFDGADYTAA 139 (359)
T ss_dssp HHTCHHHHHHHHHHHHTSCCCHHHHHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHTTCHHHH
T ss_pred HcCChHHHHHHHHHHHhcCCcccChHHHHHHHHHHH-----------------------HHHHHHHHHHHHHHccCHHHH
Confidence 666666666666666543110 1111111111000 011122334556666666666
Q ss_pred HHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 010383 299 LKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378 (512)
Q Consensus 299 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 378 (512)
...++++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...+++..
T Consensus 140 ~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~ 215 (359)
T 3ieg_A 140 ITFLDKILEVC--VWDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVRECL 215 (359)
T ss_dssp HHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 66666666544 4455666666666666666666666666654332 3445566666666666667777776666666
Q ss_pred hCCCCCChHhHH------------HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCHHHHHH
Q 010383 379 GIGVVADSTTYA------------IVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----YVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 379 ~~~~~~~~~~~~------------~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~ 442 (512)
+.. +.+...+. .+...+...|++++|...++++.+.. +.+. ..+..+..++...|++++|..
T Consensus 216 ~~~-~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A~~ 293 (359)
T 3ieg_A 216 KLD-QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEAIR 293 (359)
T ss_dssp HHC-TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred hhC-ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHHHH
Confidence 542 22222222 23566778888888888888887654 2233 234456778888888888888
Q ss_pred HHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhc
Q 010383 443 FLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG 502 (512)
Q Consensus 443 ~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 502 (512)
.+++..+.. +.+..+|..+...+...|++++|.+.++++.+ +.|+ ...+..+.++..
T Consensus 294 ~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~--~~p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 294 ICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQE--HNENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT--TCTTCHHHHHHHHHHHH
T ss_pred HHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHh--cCCCChHHHHHHHHHHH
Confidence 888888763 33677888888888888888888888888887 4455 445555555443
No 14
>3ieg_A DNAJ homolog subfamily C member 3; TPR motif, chaperone, endoplasmic reticulum, TPR repeat, UNF protein response; 2.51A {Mus musculus}
Probab=99.89 E-value=7.4e-20 Score=166.21 Aligned_cols=329 Identities=11% Similarity=0.022 Sum_probs=226.2
Q ss_pred HhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHH
Q 010383 105 AAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGL 184 (512)
Q Consensus 105 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~ 184 (512)
..+..+...+...|++++|...|+++.+..+ .+..++..+..++...|++++|...++...+.... +...+..+...+
T Consensus 4 ~~~~~~~~~~~~~g~~~~A~~~~~~~l~~~p-~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~ 81 (359)
T 3ieg_A 4 EKHLELGKKLLAAGQLADALSQFHAAVDGDP-DNYIAYYRRATVFLAMGKSKAALPDLTKVIALKMD-FTAARLQRGHLL 81 (359)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHhhCc-ccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCCC-cchHHHHHHHHH
Confidence 3445566677777777777777777665443 34567777888888888888888888888876422 557788888888
Q ss_pred hccCchhHHHHHHHHHHhCCCC---CchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChh
Q 010383 185 CKHGGCMRAYQLLEEGIQFGYL---PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT 261 (512)
Q Consensus 185 ~~~~~~~~a~~~~~~~~~~~~~---~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~ 261 (512)
...|++++|...++++.+.. + .+...+..+..... +. .+......+...|+++
T Consensus 82 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~l~~~~~-------~~----------------~~~~~a~~~~~~~~~~ 137 (359)
T 3ieg_A 82 LKQGKLDEAEDDFKKVLKSN-PSEQEEKEAESQLVKADE-------MQ----------------RLRSQALDAFDGADYT 137 (359)
T ss_dssp HHHTCHHHHHHHHHHHHTSC-CCHHHHHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHTTCHH
T ss_pred HHcCChHHHHHHHHHHHhcC-CcccChHHHHHHHHHHHH-------HH----------------HHHHHHHHHHHccCHH
Confidence 88899999999988887653 2 23333333321110 00 1222334445555556
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010383 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341 (512)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 341 (512)
+|...++.+.+..+ .+...+..+..++...|++++|...+++..... +.+...+..+...+...|++++|...+.+.
T Consensus 138 ~A~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a 214 (359)
T 3ieg_A 138 AAITFLDKILEVCV-WDAELRELRAECFIKEGEPRKAISDLKAASKLK--SDNTEAFYKISTLYYQLGDHELSLSEVREC 214 (359)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--SCCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCC-CchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 66665555555432 356667777777788888888888888777654 566777777777888888888888888776
Q ss_pred cccCCCCCChhhHH------------HHHHHHHccCCHHHHHHHHHHHHhCCCCCCh----HhHHHHHHHHHhcCCHHHH
Q 010383 342 MPQRGYSPGIVTYN------------AVLRGLFRLRRVEEAKEVFNCMLGIGVVADS----TTYAIVIDGLCESNQLDEA 405 (512)
Q Consensus 342 ~~~~~~~~~~~~~~------------~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a 405 (512)
+... +.+...+. .+...+.+.|++++|...++++.+.. +.+. ..+..+..++...|++++|
T Consensus 215 ~~~~--~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~~~~~~A 291 (359)
T 3ieg_A 215 LKLD--QDHKRCFAHYKQVKKLNKLIESAEELIRDGRYTDATSKYESVMKTE-PSVAEYTVRSKERICHCFSKDEKPVEA 291 (359)
T ss_dssp HHHC--TTCHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSSHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HhhC--ccchHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHHHHHccCHHHH
Confidence 6443 22222222 23566888999999999999988854 2233 2355577889999999999
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010383 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
...++++.+.. +.+..++..+...+...|++++|.+.|+++.+.. +-+...+..+..+..
T Consensus 292 ~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~-p~~~~~~~~l~~~~~ 351 (359)
T 3ieg_A 292 IRICSEVLQME-PDNVNALKDRAEAYLIEEMYDEAIQDYEAAQEHN-ENDQQIREGLEKAQR 351 (359)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCChHHHHHHHHHHH
Confidence 99999998764 5577889999999999999999999999998864 224555655555544
No 15
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=1.1e-19 Score=162.89 Aligned_cols=291 Identities=11% Similarity=0.026 Sum_probs=206.1
Q ss_pred CchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHH
Q 010383 207 PSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVI 286 (512)
Q Consensus 207 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 286 (512)
.+...+..+...+...|++++|.++++.+... .+.+...+..++..+...|++++|...+..+.+..+ .+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~-~p~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEK-DPFHASCLPVHIGTLVELNKANELFYLSHKLVDLYP-SNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHc-CCCChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhCc-CCHHHHHHHH
Confidence 34445555555555566666666666665543 233344455555555666666666666666665542 2566777777
Q ss_pred HHHHhcC-CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010383 287 NGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365 (512)
Q Consensus 287 ~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 365 (512)
..+...| ++++|...|++..... +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...|
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 173 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTLE--KTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLM--KGCHLPMLYIGLEYGLTN 173 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTTC--TTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHT--TTCSHHHHHHHHHHHHTT
T ss_pred HHHHHhhhhHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHHh
Confidence 8888888 8888888888887665 4566777888888888888888888888766543 334556666778888888
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC--------CCCCHHhHHHHHHHHHhcCCH
Q 010383 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS--------NIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--------~~~~~~~~~~l~~~~~~~g~~ 437 (512)
++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. .+.+..++..+..++...|++
T Consensus 174 ~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~ 252 (330)
T 3hym_B 174 NSKLAERFFSQALSIA-PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKY 252 (330)
T ss_dssp CHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCH
T ss_pred hHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCH
Confidence 8888888888888764 5566778888888888888888888888876421 133456788888888888999
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChHHHHHHHHhh-ccCCCC
Q 010383 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNP-DAVTWRILDKLH-GNRGND 507 (512)
Q Consensus 438 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p-~~~~~~~l~~~~-~~~g~~ 507 (512)
++|...+++..+.. +.+...+..+...+.+.|++++|.+.++++.+ +.| +...+..+..++ ...|+.
T Consensus 253 ~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~--~~p~~~~~~~~l~~~~~~~~g~~ 321 (330)
T 3hym_B 253 AEALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTALG--LRRDDTFSVTMLGHCIEMYIGDS 321 (330)
T ss_dssp HHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTTT--TCSCCHHHHHHHHHHHHTTTTC-
T ss_pred HHHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHHc--cCCCchHHHHHHHHHHHHHhCch
Confidence 99999998888764 33677888888888889999999999888876 345 456677777766 455543
No 16
>3hym_B Cell division cycle protein 16 homolog; APC, anaphase promoting complex, cell cycle, mitosis, cyclosome, TPR, ubiquitin, ubiquitin ligase, twinning; 2.80A {Homo sapiens}
Probab=99.88 E-value=2.6e-19 Score=160.60 Aligned_cols=270 Identities=8% Similarity=-0.014 Sum_probs=143.7
Q ss_pred CcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHH
Q 010383 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLV 216 (512)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 216 (512)
.+...+..+...+...|++++|.++|+.+.+.... +...+..++..+...|++++|...++++.+.. +.+...+..+.
T Consensus 20 ~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~-~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~ 97 (330)
T 3hym_B 20 ENLDVVVSLAERHYYNCDFKMCYKLTSVVMEKDPF-HASCLPVHIGTLVELNKANELFYLSHKLVDLY-PSNPVSWFAVG 97 (330)
T ss_dssp CCCTTHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CTTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTSTHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCC-ChhhHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHH
Confidence 34445556666777777777777777777665332 44566666677777777777777777776643 34556666777
Q ss_pred HHHhccC-CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCH
Q 010383 217 EGLCGES-DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRI 295 (512)
Q Consensus 217 ~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 295 (512)
..+...| ++++|...+++.... .+.....+..+...+...|++++|...++...+.... +...+..+...+...|++
T Consensus 98 ~~~~~~~~~~~~A~~~~~~a~~~-~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~-~~~~~~~l~~~~~~~~~~ 175 (330)
T 3hym_B 98 CYYLMVGHKNEHARRYLSKATTL-EKTYGPAWIAYGHSFAVESEHDQAMAAYFTAAQLMKG-CHLPMLYIGLEYGLTNNS 175 (330)
T ss_dssp HHHHHSCSCHHHHHHHHHHHHTT-CTTCTHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTTT-CSHHHHHHHHHHHHTTCH
T ss_pred HHHHHhhhhHHHHHHHHHHHHHh-CCccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhccc-cHHHHHHHHHHHHHHhhH
Confidence 7777777 777777777777643 2223344445555555555555555555555444322 233444455555555555
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCC-------CCCChhhHHHHHHHHHccCCHH
Q 010383 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRG-------YSPGIVTYNAVLRGLFRLRRVE 368 (512)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-------~~~~~~~~~~l~~~~~~~~~~~ 368 (512)
++|...+++..+.. +.+...+..+...+...|++++|...+.+.+.... .+.....+..+...+...|+++
T Consensus 176 ~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~ 253 (330)
T 3hym_B 176 KLAERFFSQALSIA--PEDPFVMHEVGVVAFQNGEWKTAEKWFLDALEKIKAIGNEVTVDKWEPLLNNLGHVCRKLKKYA 253 (330)
T ss_dssp HHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTTSCSCTTTTCCHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcccHHHHHHHHHHHHHHhhhccccccccHHHHHHHHHHHHHHHhcCHH
Confidence 55555555555443 33444555555555555555555555544432210 0112233444444444444444
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010383 369 EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 369 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
+|...+++..+.. +.+...+..+..+|...|++++|...++++.
T Consensus 254 ~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 297 (330)
T 3hym_B 254 EALDYHRQALVLI-PQNASTYSAIGYIHSLMGNFENAVDYFHTAL 297 (330)
T ss_dssp HHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCHHHHHHHHHTTT
T ss_pred HHHHHHHHHHhhC-ccchHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4444444444332 2233344444444444444444444444443
No 17
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=8.2e-18 Score=160.77 Aligned_cols=415 Identities=10% Similarity=0.024 Sum_probs=266.3
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHH-HhcCChhhH
Q 010383 5 CGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGV-LRTRDVERA 83 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~-~~~~~~~~a 83 (512)
.+.|++++|..+|+++.+. .+.+...|..++..+.+.|++++|..+|+++... .|+...|...+... ...|+.+.|
T Consensus 23 ~~~~~~~~a~~~~e~al~~-~P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--~p~~~lw~~~~~~~~~~~~~~~~a 99 (530)
T 2ooe_A 23 AQNQPIDKARKTYERLVAQ-FPSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--VLHIDLWKCYLSYVRETKGKLPSY 99 (530)
T ss_dssp HHSSCHHHHHHHHHHHHTT-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT--CCCHHHHHHHHHHHHHHTTTSTTH
T ss_pred HHhCCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc--CCChHHHHHHHHHHHHHccchhhH
Confidence 4578899999999999887 3336778889999999999999999999999876 36777777766533 346777777
Q ss_pred HHHHHHHHHHhhhcCCCCc-chHhHHHHHHHHHc---------cCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcC
Q 010383 84 NVLMFKLWERMKEEEDLSV-NNAAFANLVDSLCR---------EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSG 153 (512)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~---------~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 153 (512)
.+.+.+++++.....+..| +...|...+....+ .|++++|..+|++.......+....|..........+
T Consensus 100 ~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~~y~~al~~P~~~~~~~~~~~~~~e~~~~ 179 (530)
T 2ooe_A 100 KEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRRVYQRGCVNPMINIEQLWRDYNKYEEGIN 179 (530)
T ss_dssp HHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHHHHHHHTTSCCTTHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHhhc
Confidence 7655555554433223332 34556666665544 6788888888888776211111122222211110000
Q ss_pred ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHH------HhCC---CCCc--------hhhHHHHH
Q 010383 154 RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEG------IQFG---YLPS--------EHTYKVLV 216 (512)
Q Consensus 154 ~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~------~~~~---~~~~--------~~~~~~l~ 216 (512)
. .+...++. ...+++..|..++... .+.. ++|+ ...|...+
T Consensus 180 ~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~ 237 (530)
T 2ooe_A 180 I--------------------HLAKKMIE--DRSRDYMNARRVAKEYETVMKGLDRNAPSVPPQNTPQEAQQVDMWKKYI 237 (530)
T ss_dssp H--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHHHHHHCCSSSCCCCCC--CCHHHHHHHHHHHH
T ss_pred h--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHHHHHHhccccccCCCCCChhHHHHHHHHHHHH
Confidence 0 00000110 1223344454444431 1111 1222 13444444
Q ss_pred HHHhc----cCCH----HHHHHHHHHHHhCCCCCCcccHHHHHHHHHc-------cCChh-------hHHHHHHHHHhcC
Q 010383 217 EGLCG----ESDL----EKARKVLQFMLSKKDVDRTRICNIYLRALCL-------IKNPT-------ELLNVLVFMLQTQ 274 (512)
Q Consensus 217 ~~~~~----~g~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-------~~~~~-------~a~~~~~~~~~~~ 274 (512)
..... .++. ..+..+|++.... .+.+...|..++..+.. .|+.+ +|..+++...+.-
T Consensus 238 ~~e~~~~~~~~~~~~~~~~a~~~y~~al~~-~p~~~~~w~~~~~~~~~~~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~ 316 (530)
T 2ooe_A 238 QWEKSNPLRTEDQTLITKRVMFAYEQCLLV-LGHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTL 316 (530)
T ss_dssp HHHHHCSSCCSCSHHHHHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHHHHHTTTT
T ss_pred HHHHcCCccCCcchhHHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhchhhhhccchhhhhhhhHHHHHHHHHHHHHh
Confidence 33221 1222 3566677776653 34456667767666664 57765 7888888877632
Q ss_pred CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH-HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhh
Q 010383 275 CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA-VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVT 353 (512)
Q Consensus 275 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 353 (512)
.+.+...|..++..+.+.|++++|..+|+++.+.. +.+. ..|..++..+.+.|+.++|..+|.+.+... +.+...
T Consensus 317 ~p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~Al~~~--~~~~~~ 392 (530)
T 2ooe_A 317 LKKNMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHV 392 (530)
T ss_dssp CSSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSS--SSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCT--TCCTHH
T ss_pred CcccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCcc--ccCchHHHHHHHHHHHHhcCHHHHHHHHHHHHhcc--CCchHH
Confidence 23467788888888889999999999999988754 3333 578888888888899999999998876543 222233
Q ss_pred HHHHHHH-HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-CC--CHHhHHHHHH
Q 010383 354 YNAVLRG-LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-IH--DNYVYAAMIK 429 (512)
Q Consensus 354 ~~~l~~~-~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~--~~~~~~~l~~ 429 (512)
|...... +...|+.++|..+|+...+.. +.+...+..++..+.+.|+.++|..+|++++.... .| ....|...+.
T Consensus 393 ~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~ 471 (530)
T 2ooe_A 393 YVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLA 471 (530)
T ss_dssp HHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCCCHhhHHHHHHHHHhccCCCHHHHHHHHHHHHH
Confidence 3322222 335899999999999888753 45677888999999999999999999999987532 22 2447888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 010383 430 GLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.....|+.+.+..+++++.+.
T Consensus 472 ~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 472 FESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp HHHHSSCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888889999999999888775
No 18
>2ooe_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 3.00A {Mus musculus} SCOP: a.118.8.7
Probab=99.86 E-value=2.7e-17 Score=157.20 Aligned_cols=427 Identities=9% Similarity=0.019 Sum_probs=279.1
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhh
Q 010383 17 FFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKE 96 (512)
Q Consensus 17 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 96 (512)
|++.++..+. +..+|..++. +.+.|++++|..+|+++.+.. +.+...|..++..+.+.|++++|..++.+++..
T Consensus 2 le~al~~~P~-~~~~w~~l~~-~~~~~~~~~a~~~~e~al~~~-P~~~~~w~~~~~~~~~~~~~~~a~~~~~ral~~--- 75 (530)
T 2ooe_A 2 AEKKLEENPY-DLDAWSILIR-EAQNQPIDKARKTYERLVAQF-PSSGRFWKLYIEAEIKAKNYDKVEKLFQRCLMK--- 75 (530)
T ss_dssp HHHHHHHCTT-CHHHHHHHHH-HHHSSCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTT---
T ss_pred hhhHhhhCCC-CHHHHHHHHH-HHHhCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhcCCHHHHHHHHHHHHhc---
Confidence 5555555333 6778888888 477899999999999998753 346667888888888888888888877776532
Q ss_pred cCCCCcchHhHHHHHHHH-HccCChhHHHH----HHHhcCCC-CCC-CcchhHHHHHHHHHh---------cCChhhHHH
Q 010383 97 EEDLSVNNAAFANLVDSL-CREGYVNEVFR----IAEDMPQG-KSV-NEEFACGHMIDSLCR---------SGRNHGASR 160 (512)
Q Consensus 97 ~~~~~~~~~~~~~l~~~~-~~~g~~~~a~~----~~~~~~~~-~~~-~~~~~~~~l~~~~~~---------~~~~~~a~~ 160 (512)
.|+...|..++... ...|+.++|.+ +|+..... |.. ++...|...+..... .|+++.|..
T Consensus 76 ----~p~~~lw~~~~~~~~~~~~~~~~a~~~~~~~~~~al~~~g~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~a~~ 151 (530)
T 2ooe_A 76 ----VLHIDLWKCYLSYVRETKGKLPSYKEKMAQAYDFALDKIGMEIMSYQIWVDYINFLKGVEAVGSYAENQRITAVRR 151 (530)
T ss_dssp ----CCCHHHHHHHHHHHHHHTTTSTTHHHHHHHHHHHHHHHTTTSTTCHHHHHHHHHHHHHSCCCSSTTHHHHHHHHHH
T ss_pred ----CCChHHHHHHHHHHHHHccchhhHHHHHHHHHHHHHHHCCCCcccHHHHHHHHHHHhcCCCcccHHHHhHHHHHHH
Confidence 24444555555422 34566665554 55443221 221 233455555544433 455556666
Q ss_pred HHHHHHHcCCCCCc---chHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH--
Q 010383 161 VVYVMRKRGLTPSL---VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM-- 235 (512)
Q Consensus 161 ~~~~~~~~g~~p~~---~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~-- 235 (512)
+|+...+. |.. ..|..........+. .+...++. ...+++..|..+++.+
T Consensus 152 ~y~~al~~---P~~~~~~~~~~~~~~e~~~~~--------------------~~~~~~l~--~~~~~~~~A~~~~~~~~~ 206 (530)
T 2ooe_A 152 VYQRGCVN---PMINIEQLWRDYNKYEEGINI--------------------HLAKKMIE--DRSRDYMNARRVAKEYET 206 (530)
T ss_dssp HHHHHTTS---CCTTHHHHHHHHHHHHHHHCH--------------------HHHHHHHH--TTHHHHHHHHHHHHHHHH
T ss_pred HHHHHHhc---hhhhHHHHHHHHHHHHHhhch--------------------hHHHHHHH--HhhHHHHHHHHHHHHHHH
Confidence 66555542 211 111111110000000 00011110 1234566677666652
Q ss_pred ----HhCC---CCCCc--------ccHHHHHHHHHcc----CCh----hhHHHHHHHHHhcCCCCChhhHHHHHHHHHh-
Q 010383 236 ----LSKK---DVDRT--------RICNIYLRALCLI----KNP----TELLNVLVFMLQTQCQPDVITLNTVINGFCK- 291 (512)
Q Consensus 236 ----~~~~---~~~~~--------~~~~~l~~~~~~~----~~~----~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~- 291 (512)
.+.. .+|.. ..|..++...... ++. ..+...|++.+...+ .+...|..++..+.+
T Consensus 207 ~~~~l~~~~~~~~p~~~~~~~~~~~~w~~~~~~e~~~~~~~~~~~~~~~~a~~~y~~al~~~p-~~~~~w~~~~~~~~~~ 285 (530)
T 2ooe_A 207 VMKGLDRNAPSVPPQNTPQEAQQVDMWKKYIQWEKSNPLRTEDQTLITKRVMFAYEQCLLVLG-HHPDIWYEAAQYLEQS 285 (530)
T ss_dssp HHHHCCSSSCCCCCC--CCHHHHHHHHHHHHHHHHHCSSCCSCSHHHHHHHHHHHHHHHHHHT-TCHHHHHHHHHHHHHH
T ss_pred HHHHhccccccCCCCCChhHHHHHHHHHHHHHHHHcCCccCCcchhHHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHh
Confidence 2221 12221 2344444332221 222 367788888887643 367788888888775
Q ss_pred ------cCCHH-------HHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-h-hhHHH
Q 010383 292 ------MGRIE-------EALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-I-VTYNA 356 (512)
Q Consensus 292 ------~~~~~-------~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~-~~~~~ 356 (512)
.|+++ +|..+|++..+.-. +.+...|..++..+.+.|++++|..+|++.+.. .|+ . ..|..
T Consensus 286 ~~~~~~~g~~~~a~~~~~~A~~~~~~Al~~~~-p~~~~l~~~~~~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~~~ 361 (530)
T 2ooe_A 286 SKLLAEKGDMNNAKLFSDEAANIYERAISTLL-KKNMLLYFAYADYEESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQ 361 (530)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHHHHHTTTTC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHS---SSSCHHHHHHH
T ss_pred chhhhhccchhhhhhhhHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHhcCCHHHHHHHHHHHhCc---cccCchHHHHH
Confidence 68876 89999999986321 567889999999999999999999999998753 444 2 47888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH-HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010383 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (512)
++..+.+.|++++|..+|++..+.. +.+...+...... +...|+.++|..+|++.++.. +.+...|..++..+.+.|
T Consensus 362 ~~~~~~~~~~~~~A~~~~~~Al~~~-~~~~~~~~~~a~~~~~~~~~~~~A~~~~e~al~~~-p~~~~~~~~~~~~~~~~g 439 (530)
T 2ooe_A 362 YMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLN 439 (530)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHTCT-TCCTHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHTTTT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHhcc-CCchHHHHHHHHHHHHHcCChhHHHHHHHHHHHHC-CCCHHHHHHHHHHHHhCC
Confidence 8888889999999999999999853 3333344333222 346899999999999998764 557889999999999999
Q ss_pred CHHHHHHHHHHHHHCCC-CCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 436 KIHEAVHFLYELVDSGV-TPN--IVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 436 ~~~~a~~~~~~~~~~~~-~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
+.++|..+|++.+..+. .|+ ...|...+......|+.+.+..+.+++.+.
T Consensus 440 ~~~~Ar~~~~~al~~~~~~~~~~~~lw~~~~~~e~~~G~~~~~~~~~~r~~~~ 492 (530)
T 2ooe_A 440 EDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVEKRRFTA 492 (530)
T ss_dssp CHHHHHHHHHHHHHSCCSCGGGCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHH
T ss_pred CHhhHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHH
Confidence 99999999999998742 222 347888888888899999999999998763
No 19
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=8.9e-17 Score=151.98 Aligned_cols=383 Identities=8% Similarity=-0.083 Sum_probs=251.6
Q ss_pred ChhhHHHHHHHHHh----cCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHc----cCChhHHHHHHHhcCCCC
Q 010383 63 NSLTYSVLVRGVLR----TRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR----EGYVNEVFRIAEDMPQGK 134 (512)
Q Consensus 63 ~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 134 (512)
++..+..+...|.. .+++++|...+.+..+. -+...+..|...|.. .+++++|.+.|++..+.+
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~--------~~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~ 109 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQ--------GYTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG 109 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT--------TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHC--------CCHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC
Confidence 44455555555554 55555555555554431 123344445555555 556666666666554433
Q ss_pred CCCcchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc----cCchhHHHHHHHHHHhCCCC
Q 010383 135 SVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK----HGGCMRAYQLLEEGIQFGYL 206 (512)
Q Consensus 135 ~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~ 206 (512)
+...+..+...|.. .+++++|...|+...+.| +...+..+...|.. .++.++|.+.|++..+.+
T Consensus 110 ---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~-- 181 (490)
T 2xm6_A 110 ---LPQAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG-- 181 (490)
T ss_dssp ---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT--
T ss_pred ---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC--
Confidence 23444555555655 566777777777666654 44556666666655 667777777777776643
Q ss_pred CchhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHc----cCChhhHHHHHHHHHhcCCCCC
Q 010383 207 PSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL----IKNPTELLNVLVFMLQTQCQPD 278 (512)
Q Consensus 207 ~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~ 278 (512)
+...+..+...|.. .+++++|.++|++..+.+ +...+..+...+.. .+++++|..+++...+.+ +
T Consensus 182 -~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~ 254 (490)
T 2xm6_A 182 -NVWSCNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG---N 254 (490)
T ss_dssp -CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT---C
T ss_pred -CHHHHHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---C
Confidence 45566666666665 677777777777776543 33455555555554 667777777777776654 4
Q ss_pred hhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-----CCHHHHHHHHHhhcccCCCCC
Q 010383 279 VITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-----GRIQEALNLLYQVMPQRGYSP 349 (512)
Q Consensus 279 ~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~ 349 (512)
...+..+...|.. .+++++|+..|++..+.+ +...+..+...+... +++++|..+|.+.... .
T Consensus 255 ~~a~~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~~----~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~----~ 326 (490)
T 2xm6_A 255 SIAQFRLGYILEQGLAGAKEPLKALEWYRKSAEQG----NSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQ----G 326 (490)
T ss_dssp HHHHHHHHHHHHHTTTSSCCHHHHHHHHHHHHTTT----CHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHT----T
T ss_pred HHHHHHHHHHHHCCCCCCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhc----C
Confidence 4566667777777 788999999999887643 455666777777776 8999999999886643 2
Q ss_pred ChhhHHHHHHHHHccC---CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHH
Q 010383 350 GIVTYNAVLRGLFRLR---RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNY 422 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~ 422 (512)
+...+..+...|...| +.++|...|++..+.| +...+..|...|.. .+++++|...|++..+.+ +..
T Consensus 327 ~~~a~~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~ 400 (490)
T 2xm6_A 327 DATAQANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSA 400 (490)
T ss_dssp CHHHHHHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHH
T ss_pred CHHHHHHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHH
Confidence 4556667777776655 7889999999988864 66778888888888 789999999999988765 466
Q ss_pred hHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCC-C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 423 VYAAMIKGLCR----SGKIHEAVHFLYELVDSGVT-P-NIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 423 ~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.+..|...|.. .+++++|...|++..+.+.. | +......+...+. .+.+.+.+...+..+
T Consensus 401 a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~~a~~~l~~~~~--~~~~~a~~~a~~~~~ 466 (490)
T 2xm6_A 401 AQVQLGEIYYYGLGVERDYVQAWAWFDTASTNDMNLFGTENRNITEKKLTA--KQLQQAELLSQQYIE 466 (490)
T ss_dssp HHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHHHCCHHHHHHHHHHHTTSCH--HHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCCCCCcCCHHHHHHHHhcCH--hHHHHHHHHHHHHHH
Confidence 78888888887 78999999999999887643 2 3334444433332 234445544444443
No 20
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=1.7e-19 Score=164.50 Aligned_cols=266 Identities=13% Similarity=-0.008 Sum_probs=185.0
Q ss_pred hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHH
Q 010383 211 TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFC 290 (512)
Q Consensus 211 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 290 (512)
.+..+...+...|++++|...++++.+. .+.+...+..+...+...|++++|...++.+.+..+ .+...+..+..++.
T Consensus 66 ~~~~~~~~~~~~g~~~~A~~~~~~al~~-~p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~-~~~~~~~~l~~~~~ 143 (368)
T 1fch_A 66 QPFEEGLRRLQEGDLPNAVLLFEAAVQQ-DPKHMEAWQYLGTTQAENEQELLAISALRRCLELKP-DNQTALMALAVSFT 143 (368)
T ss_dssp SHHHHHHHHHHTTCHHHHHHHHHHHHHS-CTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHh-CCCCHHHHHHHHHHHHHCcCHHHHHHHHHHHHhcCC-CCHHHHHHHHHHHH
Confidence 3444555555555555555555555432 223334444555555555555555555555554432 25556666666777
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCcHHHHHH---------------HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010383 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTT---------------IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355 (512)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~---------------l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 355 (512)
..|++++|...++++.... +.+...+.. .+..+...|++++|...+.+.+......++..++.
T Consensus 144 ~~g~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~ 221 (368)
T 1fch_A 144 NESLQRQACEILRDWLRYT--PAYAHLVTPAEEGAGGAGLGPSKRILGSLLSDSLFLEVKELFLAAVRLDPTSIDPDVQC 221 (368)
T ss_dssp HTTCHHHHHHHHHHHHHTS--TTTGGGCC---------------CTTHHHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--cCcHHHHHHHHHHhhhhcccHHHHHHHHHhhcccHHHHHHHHHHHHHhCcCcccHHHHH
Confidence 7777777777777766544 222222211 12333388899999999988776553333577888
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010383 356 AVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435 (512)
Q Consensus 356 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (512)
.+...+...|++++|...++++.+.. +.+..++..+..++...|++++|...++++.+.. +.+..++..+..+|...|
T Consensus 222 ~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g 299 (368)
T 1fch_A 222 GLGVLFNLSGEYDKAVDCFTAALSVR-PNDYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLG 299 (368)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCC
Confidence 89999999999999999999988864 5567789999999999999999999999988764 566788999999999999
Q ss_pred CHHHHHHHHHHHHHCCCCC----------ChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010383 436 KIHEAVHFLYELVDSGVTP----------NIVCYNVVIDGACKLSMKREAYQILREM 482 (512)
Q Consensus 436 ~~~~a~~~~~~~~~~~~~p----------~~~~~~~l~~~~~~~g~~~~a~~~~~~m 482 (512)
++++|...++++.+..... ...+|..+..++...|++++|..++++.
T Consensus 300 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~ 356 (368)
T 1fch_A 300 AHREAVEHFLEALNMQRKSRGPRGEGGAMSENIWSTLRLALSMLGQSDAYGAADARD 356 (368)
T ss_dssp CHHHHHHHHHHHHHHHHTC------CCCCCHHHHHHHHHHHHHHTCGGGHHHHHTTC
T ss_pred CHHHHHHHHHHHHHhCCCCCCccccccchhhHHHHHHHHHHHHhCChHhHHHhHHHH
Confidence 9999999999988643221 1578999999999999999999887643
No 21
>1fch_A Peroxisomal targeting signal 1 receptor; protein-peptide complex, tetratricopeptide repeat, TPR, helical repeat, signaling protein; 2.20A {Homo sapiens} SCOP: a.118.8.1 PDB: 2j9q_A 3imz_B* 3r9a_B* 2c0m_A 2c0l_A
Probab=99.85 E-value=5.2e-19 Score=161.23 Aligned_cols=307 Identities=9% Similarity=-0.042 Sum_probs=204.8
Q ss_pred HHccCChhHHHH-HHHhcCCCCC---CCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCc
Q 010383 114 LCREGYVNEVFR-IAEDMPQGKS---VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGG 189 (512)
Q Consensus 114 ~~~~g~~~~a~~-~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~ 189 (512)
+...|++++|.. .+++.....+ ..+...+..+...+...|++++|...|+.+.+.... +..++..+..++...|+
T Consensus 35 ~~~~~~~~~a~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~ 113 (368)
T 1fch_A 35 HPWLSDYDDLTSATYDKGYQFEEENPLRDHPQPFEEGLRRLQEGDLPNAVLLFEAAVQQDPK-HMEAWQYLGTTQAENEQ 113 (368)
T ss_dssp -----------CHHHHCCCCCCSSCTTTTCSSHHHHHHHHHHTTCHHHHHHHHHHHHHSCTT-CHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHhhhhhHHHhcCCCCcccchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHCcC
Confidence 445578888888 8886554332 224566778889999999999999999999887433 66788889999999999
Q ss_pred hhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHH
Q 010383 190 CMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVF 269 (512)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 269 (512)
+++|.+.++++.+.. +.+..++..+...+...|++++|.+.++.+...... ....+...... ..
T Consensus 114 ~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~~~~~~~~-~~~~~~~~~~~-------~~------- 177 (368)
T 1fch_A 114 ELLAISALRRCLELK-PDNQTALMALAVSFTNESLQRQACEILRDWLRYTPA-YAHLVTPAEEG-------AG------- 177 (368)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTSTT-TGGGCC---------------------
T ss_pred HHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCcC-cHHHHHHHHHH-------hh-------
Confidence 999999999988765 557788888999999999999999999998865322 22221111000 00
Q ss_pred HHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCC
Q 010383 270 MLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSP 349 (512)
Q Consensus 270 ~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 349 (512)
...+. ..+..+. .+...|++++|...++++.......++..++..+...+...|++++|...+.+.+... +.
T Consensus 178 ----~~~~~-~~~~~~~-~~~~~~~~~~A~~~~~~a~~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--~~ 249 (368)
T 1fch_A 178 ----GAGLG-PSKRILG-SLLSDSLFLEVKELFLAAVRLDPTSIDPDVQCGLGVLFNLSGEYDKAVDCFTAALSVR--PN 249 (368)
T ss_dssp -------------CTTH-HHHHHHHHHHHHHHHHHHHHHSTTSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TT
T ss_pred ----hhccc-HHHHHHH-HHhhcccHHHHHHHHHHHHHhCcCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--cC
Confidence 00000 0111222 2236677888888888777654211256777777778888888888888887766443 34
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC----------C
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI----------H 419 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~----------~ 419 (512)
+...+..+...+...|++++|...++++.+.. +.+..++..+..+|.+.|++++|...++++.+.... .
T Consensus 250 ~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 328 (368)
T 1fch_A 250 DYLLWNKLGATLANGNQSEEAVAAYRRALELQ-PGYIRSRYNLGISCINLGAHREAVEHFLEALNMQRKSRGPRGEGGAM 328 (368)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTC------CCCC
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCCCCCCccccccch
Confidence 56677777778888888888888888877753 455667778888888888888888888877643211 1
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 420 DNYVYAAMIKGLCRSGKIHEAVHFLYE 446 (512)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~ 446 (512)
...+|..+..+|...|++++|..++.+
T Consensus 329 ~~~~~~~l~~~~~~~g~~~~A~~~~~~ 355 (368)
T 1fch_A 329 SENIWSTLRLALSMLGQSDAYGAADAR 355 (368)
T ss_dssp CHHHHHHHHHHHHHHTCGGGHHHHHTT
T ss_pred hhHHHHHHHHHHHHhCChHhHHHhHHH
Confidence 156788888888888888888777654
No 22
>2xm6_A Protein corresponding to locus C5321 from CFT073 strain; unknown function, SEL1-like repeats; 1.68A {Escherichia coli}
Probab=99.85 E-value=1.6e-16 Score=150.30 Aligned_cols=353 Identities=8% Similarity=-0.050 Sum_probs=292.8
Q ss_pred chHhHHHHHHHHHc----cCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHh----cCChhhHHHHHHHHHHcCCCCCc
Q 010383 103 NNAAFANLVDSLCR----EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCR----SGRNHGASRVVYVMRKRGLTPSL 174 (512)
Q Consensus 103 ~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~g~~p~~ 174 (512)
+...+..+...|.. .+++++|+..|++..+.+ +..++..|...|.. .+++++|.+.|+...+.| +.
T Consensus 38 ~~~a~~~lg~~y~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~ 111 (490)
T 2xm6_A 38 EAKAQLELGYRYFQGNETTKDLTQAMDWFRRAAEQG---YTPAEYVLGLRYMNGEGVPQDYAQAVIWYKKAALKG---LP 111 (490)
T ss_dssp CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CH
T ss_pred CHHHHHHHHHHHHcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CH
Confidence 34455567777777 899999999999887654 45677778888888 899999999999998875 66
Q ss_pred chHHHHHHHHhc----cCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCccc
Q 010383 175 VSYNSIVHGLCK----HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRI 246 (512)
Q Consensus 175 ~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~ 246 (512)
..+..+...|.. .+++++|...|++..+.+ +...+..+...|.. .+++++|.++|++..+.+ +...
T Consensus 112 ~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~a~~~~---~~~a 185 (490)
T 2xm6_A 112 QAQQNLGVMYHEGNGVKVDKAESVKWFRLAAEQG---RDSGQQSMGDAYFEGDGVTRDYVMAREWYSKAAEQG---NVWS 185 (490)
T ss_dssp HHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHH
T ss_pred HHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHH
Confidence 778888888887 889999999999998865 45677778777876 889999999999998764 4667
Q ss_pred HHHHHHHHHc----cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHH
Q 010383 247 CNIYLRALCL----IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTF 318 (512)
Q Consensus 247 ~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~ 318 (512)
+..+...|.. .+++++|..+++...+.+ +...+..+...|.. .+++++|...|++..+.+ +...+
T Consensus 186 ~~~Lg~~y~~g~g~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~y~~g~g~~~~~~~A~~~~~~a~~~~----~~~a~ 258 (490)
T 2xm6_A 186 CNQLGYMYSRGLGVERNDAISAQWYRKSATSG---DELGQLHLADMYYFGIGVTQDYTQSRVLFSQSAEQG----NSIAQ 258 (490)
T ss_dssp HHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHTTT----CHHHH
T ss_pred HHHHHHHHhcCCCCCcCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC----CHHHH
Confidence 7788888887 899999999999998875 56677788888886 789999999999998753 45566
Q ss_pred HHHHHHHhh----cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChHhH
Q 010383 319 TTIIFGLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTY 389 (512)
Q Consensus 319 ~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~ 389 (512)
..+...+.. .++.++|+.+|.+.... .++..+..+...|... +++++|...|++..+.| +...+
T Consensus 259 ~~lg~~y~~g~~~~~d~~~A~~~~~~a~~~----~~~~a~~~Lg~~y~~~~~g~~~~~~~A~~~~~~a~~~~---~~~a~ 331 (490)
T 2xm6_A 259 FRLGYILEQGLAGAKEPLKALEWYRKSAEQ----GNSDGQYYLAHLYDKGAEGVAKNREQAISWYTKSAEQG---DATAQ 331 (490)
T ss_dssp HHHHHHHHHTTTSSCCHHHHHHHHHHHHTT----TCHHHHHHHHHHHHHCBTTBCCCHHHHHHHHHHHHHTT---CHHHH
T ss_pred HHHHHHHHCCCCCCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHcCCCCCcCCHHHHHHHHHHHHhcC---CHHHH
Confidence 677777777 89999999999987643 2556777777888776 89999999999999865 45677
Q ss_pred HHHHHHHHhcC---CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHH
Q 010383 390 AIVIDGLCESN---QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVV 462 (512)
Q Consensus 390 ~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l 462 (512)
..+...|...| ++++|.+.+++..+.+ +...+..|...|.. .+++++|.+.|++..+.+ +...+..|
T Consensus 332 ~~lg~~y~~~g~~~~~~~A~~~~~~a~~~~---~~~a~~~Lg~~y~~g~g~~~~~~~A~~~~~~A~~~~---~~~a~~~L 405 (490)
T 2xm6_A 332 ANLGAIYFRLGSEEEHKKAVEWFRKAAAKG---EKAAQFNLGNALLQGKGVKKDEQQAAIWMRKAAEQG---LSAAQVQL 405 (490)
T ss_dssp HHHHHHHHHSCCHHHHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHH
T ss_pred HHHHHHHHhCCCcccHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHhCC---CHHHHHHH
Confidence 78888888766 8899999999998764 56788889999988 899999999999999875 56788889
Q ss_pred HHHHHh----cCCHHHHHHHHHHHHHCCC
Q 010383 463 IDGACK----LSMKREAYQILREMRKNGL 487 (512)
Q Consensus 463 ~~~~~~----~g~~~~a~~~~~~m~~~~~ 487 (512)
...|.. .+++++|...|++..+.+.
T Consensus 406 g~~y~~g~g~~~d~~~A~~~~~~A~~~~~ 434 (490)
T 2xm6_A 406 GEIYYYGLGVERDYVQAWAWFDTASTNDM 434 (490)
T ss_dssp HHHHHHTSSSCCCHHHHHHHHHHHHHHHC
T ss_pred HHHHHcCCCCCCCHHHHHHHHHHHHHCCC
Confidence 999988 8999999999999998763
No 23
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.83 E-value=9.1e-19 Score=155.26 Aligned_cols=285 Identities=10% Similarity=0.058 Sum_probs=132.4
Q ss_pred ccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHH
Q 010383 6 GLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANV 85 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 85 (512)
+.|++++|.+.++++. ++.+|..|+.++.+.|++++|++.|.+. +|..+|..++.++...|++++|..
T Consensus 15 ~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfika------~D~~~y~~V~~~ae~~g~~EeAi~ 82 (449)
T 1b89_A 15 HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVK 82 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHcC------CCHHHHHHHHHHHHhCCCHHHHHH
Confidence 4678999999999883 2358999999999999999999999653 577899999999999999999988
Q ss_pred HHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHH
Q 010383 86 LMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVM 165 (512)
Q Consensus 86 ~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 165 (512)
.+....+. .+++.+.+.++.+|.+.|+++++.++++. |+..+|..+...|...|.+++|...|..+
T Consensus 83 yl~~ark~-------~~~~~i~~~Li~~Y~Klg~l~e~e~f~~~-------pn~~a~~~IGd~~~~~g~yeeA~~~Y~~a 148 (449)
T 1b89_A 83 YLQMARKK-------ARESYVETELIFALAKTNRLAELEEFING-------PNNAHIQQVGDRCYDEKMYDAAKLLYNNV 148 (449)
T ss_dssp ---------------------------------CHHHHTTTTTC-------C----------------CTTTHHHHHHHT
T ss_pred HHHHHHHh-------CccchhHHHHHHHHHHhCCHHHHHHHHcC-------CcHHHHHHHHHHHHHcCCHHHHHHHHHHh
Confidence 66554432 23355667799999999999998887753 66679999999999999999999999966
Q ss_pred HHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc
Q 010383 166 RKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR 245 (512)
Q Consensus 166 ~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 245 (512)
..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|...... ....+.
T Consensus 149 ---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~-----L~~~ad 208 (449)
T 1b89_A 149 ---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHAD 208 (449)
T ss_dssp ---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-----TTTCHH
T ss_pred ---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-----HHhCHh
Confidence 47999999999999999999999987 3788999999999999999999655443 223334
Q ss_pred cHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------cHHHHH
Q 010383 246 ICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP------DAVTFT 319 (512)
Q Consensus 246 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~ 319 (512)
....++..|.+.|.++++..+++..+... +-....|+.+.-+|++- ++++..+.++....+-.++| +...|.
T Consensus 209 ~l~~lv~~Yek~G~~eEai~lLe~aL~le-~ah~~~ftel~il~~ky-~p~k~~ehl~~~~~~ini~k~~~~~~~~~~w~ 286 (449)
T 1b89_A 209 ELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWA 286 (449)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHTTST-TCCHHHHHHHHHHHHTT-CHHHHHHHHHHHSTTSCHHHHHHHHHTTTCHH
T ss_pred hHHHHHHHHHHCCCHHHHHHHHHHHhCCc-HHHHHHHHHHHHHHHhc-CHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHH
Confidence 45567788899999999999999888665 44667777777777664 44444444444333222122 356688
Q ss_pred HHHHHHhhcCCHHHHHHHH
Q 010383 320 TIIFGLLNVGRIQEALNLL 338 (512)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~ 338 (512)
.+...|.+.++++.|...+
T Consensus 287 e~~~ly~~~~e~d~A~~tm 305 (449)
T 1b89_A 287 ELVFLYDKYEEYDNAIITM 305 (449)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHhhchHHHHHHHH
Confidence 8888889999999888755
No 24
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.83 E-value=2.3e-19 Score=163.28 Aligned_cols=267 Identities=10% Similarity=-0.017 Sum_probs=182.1
Q ss_pred cchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHH
Q 010383 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRA 253 (512)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 253 (512)
...+..+...+.+.|++++|...|+++.+.. +.+..++..+...+...|++++|...|+++....
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-------------- 129 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQD-PGDAEAWQFLGITQAENENEQAAIVALQRCLELQ-------------- 129 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--------------
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--------------
Confidence 3445666666666666666666666666543 3345566666666666666666666666655421
Q ss_pred HHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc----------HHHHHHHHH
Q 010383 254 LCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD----------AVTFTTIIF 323 (512)
Q Consensus 254 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----------~~~~~~l~~ 323 (512)
+.+...+..+..+|...|++++|...++++.+.. +.+ ...+..+..
T Consensus 130 ----------------------p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~l~~ 185 (365)
T 4eqf_A 130 ----------------------PNNLKALMALAVSYTNTSHQQDACEALKNWIKQN--PKYKYLVKNKKGSPGLTRRMSK 185 (365)
T ss_dssp ----------------------TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHCC----------------
T ss_pred ----------------------CCCHHHHHHHHHHHHccccHHHHHHHHHHHHHhC--ccchHHHhhhccchHHHHHHHH
Confidence 1245556666666666666666666666665532 111 222334467
Q ss_pred HHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHH
Q 010383 324 GLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLD 403 (512)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 403 (512)
.+...|++++|...+.+.+......++..++..+...+...|++++|...|+++.+.. +.+..++..+..+|...|+++
T Consensus 186 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 264 (365)
T 4eqf_A 186 SPVDSSVLEGVKELYLEAAHQNGDMIDPDLQTGLGVLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSE 264 (365)
T ss_dssp ---CCHHHHHHHHHHHHHHHHSCSSCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHhhhhhHHHHHHHHHHHHHhCcCccCHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHH
Confidence 7788888888888888877655333367788888888888899999999998888764 556778888999999999999
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC-----------CChhhHHHHHHHHHhcCCH
Q 010383 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT-----------PNIVCYNVVIDGACKLSMK 472 (512)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------p~~~~~~~l~~~~~~~g~~ 472 (512)
+|...++++++.. +.+..++..+..+|...|++++|...|+++.+.... .+..+|..+..++...|+.
T Consensus 265 ~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 343 (365)
T 4eqf_A 265 EAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYREAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQP 343 (365)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTCH
T ss_pred HHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHHHHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCcH
Confidence 9999999988764 556778888999999999999999999988764211 1367789999999999999
Q ss_pred HHHHHHHHH
Q 010383 473 REAYQILRE 481 (512)
Q Consensus 473 ~~a~~~~~~ 481 (512)
+.+.+..++
T Consensus 344 ~~a~~~~~~ 352 (365)
T 4eqf_A 344 ELFQAANLG 352 (365)
T ss_dssp HHHHHHHTT
T ss_pred HHHHHHHHh
Confidence 888877654
No 25
>1b89_A Protein (clathrin heavy chain); triskelion, coated vesicles, endocytosis, SELF- assembly, alpha-alpha superhelix; 2.60A {Bos taurus} SCOP: a.118.1.3
Probab=99.82 E-value=2.7e-17 Score=145.89 Aligned_cols=353 Identities=14% Similarity=0.102 Sum_probs=169.2
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010383 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (512)
+.+.|+. +.|+.++|.+.++++. ++.+|+.++.++.+.|++++|...+.+ .++..+|..+
T Consensus 8 a~~~ll~---~~~~ld~A~~fae~~~------~~~vWs~La~A~l~~g~~~eAIdsfik-----------a~D~~~y~~V 67 (449)
T 1b89_A 8 AVQVLIE---HIGNLDRAYEFAERCN------EPAVWSQLAKAQLQKGMVKEAIDSYIK-----------ADDPSSYMEV 67 (449)
T ss_dssp --------------------------------------------------------------------------------
T ss_pred HHHHHHH---HccCHHHHHHHHHhCC------ChHHHHHHHHHHHHcCCHHHHHHHHHc-----------CCCHHHHHHH
Confidence 3444444 6778999999999993 335899999999999999999887743 2466788899
Q ss_pred HHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCch
Q 010383 111 VDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGC 190 (512)
Q Consensus 111 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~ 190 (512)
+..+...|++++|+++++...+. .+++.+.+.++.+|.+.|+++++.++++ .|+..+|..+...|...|.+
T Consensus 68 ~~~ae~~g~~EeAi~yl~~ark~--~~~~~i~~~Li~~Y~Klg~l~e~e~f~~-------~pn~~a~~~IGd~~~~~g~y 138 (449)
T 1b89_A 68 VQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMY 138 (449)
T ss_dssp -------------------------------------------CHHHHTTTTT-------CC----------------CT
T ss_pred HHHHHhCCCHHHHHHHHHHHHHh--CccchhHHHHHHHHHHhCCHHHHHHHHc-------CCcHHHHHHHHHHHHHcCCH
Confidence 99999999999999988877664 3556778889999999999999988874 36778999999999999999
Q ss_pred hHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHH
Q 010383 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFM 270 (512)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 270 (512)
++|...|..+ ..|..++.++.+.|++++|.+.++++ .++.+|..++.+|...|+++.|......
T Consensus 139 eeA~~~Y~~a---------~n~~~LA~~L~~Lg~yq~AVea~~KA------~~~~~Wk~v~~aCv~~~ef~lA~~~~l~- 202 (449)
T 1b89_A 139 DAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVDGARKA------NSTRTWKEVCFACVDGKEFRLAQMCGLH- 202 (449)
T ss_dssp TTHHHHHHHT---------TCHHHHHHHHHTTTCHHHHHHHHHHH------TCHHHHHHHHHHHHHTTCHHHHHHTTTT-
T ss_pred HHHHHHHHHh---------hhHHHHHHHHHHhccHHHHHHHHHHc------CCchhHHHHHHHHHHcCcHHHHHHHHHH-
Confidence 9999999976 47999999999999999999999988 3577899999999999999999654443
Q ss_pred HhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc--CCHHHHHHHHHhhcccCCCC
Q 010383 271 LQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV--GRIQEALNLLYQVMPQRGYS 348 (512)
Q Consensus 271 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--~~~~~a~~~~~~~~~~~~~~ 348 (512)
+...+.....++..|.+.|.+++|+.+++...... +.....|+.+.-+|++- ++..+.++.|.. ...++
T Consensus 203 ----L~~~ad~l~~lv~~Yek~G~~eEai~lLe~aL~le--~ah~~~ftel~il~~ky~p~k~~ehl~~~~~---~ini~ 273 (449)
T 1b89_A 203 ----IVVHADELEELINYYQDRGYFEELITMLEAALGLE--RAHMGMFTELAILYSKFKPQKMREHLELFWS---RVNIP 273 (449)
T ss_dssp ----TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTST--TCCHHHHHHHHHHHHTTCHHHHHHHHHHHST---TSCHH
T ss_pred ----HHhCHhhHHHHHHHHHHCCCHHHHHHHHHHHhCCc--HHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---HhcCc
Confidence 22344445678899999999999999999998765 56677777777666653 445555555543 44555
Q ss_pred C------ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHH
Q 010383 349 P------GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNY 422 (512)
Q Consensus 349 ~------~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~ 422 (512)
| +...|..+...|.+.++++.|... |.+. +++..-.....+...+..+.+--.+...-.+.. .|.
T Consensus 274 k~~~~~~~~~~w~e~~~ly~~~~e~d~A~~t---m~~h--~~~a~~~~~f~~~~~kv~n~elyYkai~fyl~~--~p~-- 344 (449)
T 1b89_A 274 KVLRAAEQAHLWAELVFLYDKYEEYDNAIIT---MMNH--PTDAWKEGQFKDIITKVANVELYYRAIQFYLEF--KPL-- 344 (449)
T ss_dssp HHHHHHHTTTCHHHHHHHHHHTTCHHHHHHH---HHHS--TTTTCCHHHHHHHHHHCSSTHHHHHHHHHHHHH--CGG--
T ss_pred HHHHHHHHHHHHHHHHHHHHhhchHHHHHHH---HHhC--ChhhhhhHHHHHHHhchhHHHHHHHHHHHHHhc--CHH--
Confidence 5 567899999999999999988775 4432 445444445555555555555433333333211 232
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 423 VYAAMIKGLCRSGKIHEAVHFLYE 446 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~ 446 (512)
.++.|+.++...=|...+..+|++
T Consensus 345 ~l~~ll~~l~~~ld~~r~v~~~~~ 368 (449)
T 1b89_A 345 LLNDLLMVLSPRLDHTRAVNYFSK 368 (449)
T ss_dssp GHHHHHHHHGGGCCHHHHHHHHHH
T ss_pred HHHHHHHHHHhccCcHHHHHHHHH
Confidence 466666666666666666666543
No 26
>4eqf_A PEX5-related protein; accessory protein, tetratricopeptide repeat, TPR; 3.00A {Mus musculus}
Probab=99.82 E-value=8.6e-19 Score=159.50 Aligned_cols=257 Identities=11% Similarity=-0.058 Sum_probs=203.8
Q ss_pred cccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 010383 244 TRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323 (512)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (512)
...+......+...|++++|...++.+.+..+ .+...+..+..++...|++++|+..|+++.+.. +.+..++..+..
T Consensus 65 ~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~ 141 (365)
T 4eqf_A 65 WPGAFEEGLKRLKEGDLPVTILFMEAAILQDP-GDAEAWQFLGITQAENENEQAAIVALQRCLELQ--PNNLKALMALAV 141 (365)
T ss_dssp CTTHHHHHHHHHHHTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHCCCHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CCCHHHHHHHHH
Confidence 44577777778888888888888888877654 378889999999999999999999999998865 567889999999
Q ss_pred HHhhcCCHHHHHHHHHhhcccCCCCCC--------hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChHhHHHHH
Q 010383 324 GLLNVGRIQEALNLLYQVMPQRGYSPG--------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIVI 393 (512)
Q Consensus 324 ~~~~~~~~~~a~~~~~~~~~~~~~~~~--------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~ 393 (512)
.+...|++++|...+.+.+....-.++ ...+..+...+...|++++|...++++.+.. +. +..++..+.
T Consensus 142 ~~~~~g~~~~A~~~~~~al~~~p~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~l~ 220 (365)
T 4eqf_A 142 SYTNTSHQQDACEALKNWIKQNPKYKYLVKNKKGSPGLTRRMSKSPVDSSVLEGVKELYLEAAHQN-GDMIDPDLQTGLG 220 (365)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCHHHHCC-------------------CCHHHHHHHHHHHHHHHHS-CSSCCHHHHHHHH
T ss_pred HHHccccHHHHHHHHHHHHHhCccchHHHhhhccchHHHHHHHHHHhhhhhHHHHHHHHHHHHHhC-cCccCHHHHHHHH
Confidence 999999999999999997754311111 1223345778899999999999999999864 33 678999999
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010383 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 473 (512)
..|...|++++|...++++.+.. +.+..+|..+..+|...|++++|...|+++.+.. +.+..++..+..+|.+.|+++
T Consensus 221 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~ 298 (365)
T 4eqf_A 221 VLFHLSGEFNRAIDAFNAALTVR-PEDYSLWNRLGATLANGDRSEEAVEAYTRALEIQ-PGFIRSRYNLGISCINLGAYR 298 (365)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCH
T ss_pred HHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCchHHHHHHHHHHHHCCCHH
Confidence 99999999999999999998765 5678899999999999999999999999999874 335788999999999999999
Q ss_pred HHHHHHHHHHHCC---CCC--------ChHHHHHHHHhhccCCC
Q 010383 474 EAYQILREMRKNG---LNP--------DAVTWRILDKLHGNRGN 506 (512)
Q Consensus 474 ~a~~~~~~m~~~~---~~p--------~~~~~~~l~~~~~~~g~ 506 (512)
+|.+.++++.+.. ..| +...|..|..++...|+
T Consensus 299 ~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 342 (365)
T 4eqf_A 299 EAVSNFLTALSLQRKSRNQQQVPHPAISGNIWAALRIALSLMDQ 342 (365)
T ss_dssp HHHHHHHHHHHHHHCC------------CHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhCcccCCCcccchhhhHHHHHHHHHHHHHHcCc
Confidence 9999999987531 011 25678888877766554
No 27
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=9.4e-16 Score=152.12 Aligned_cols=261 Identities=10% Similarity=0.025 Sum_probs=115.7
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh
Q 010383 141 ACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC 220 (512)
Q Consensus 141 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 220 (512)
+|..+..++...|++++|...|.+. -|...|..++.++.+.|++++|.+.+...++.. +++...+.++.+|+
T Consensus 1107 vWsqLAKAql~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYA 1178 (1630)
T 1xi4_A 1107 VWSQLAKAQLQKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALA 1178 (1630)
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHH
Confidence 4444444444444444444444321 133444444444444444444444444443322 11111112444444
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHH
Q 010383 221 GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALK 300 (512)
Q Consensus 221 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 300 (512)
+.++++....+. . .++...+..+...+...|++++|...|... ..|..+..++.+.|+++.|.+
T Consensus 1179 Kl~rleele~fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA---------~ny~rLA~tLvkLge~q~AIE 1242 (1630)
T 1xi4_A 1179 KTNRLAELEEFI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV---------SNFGRLASTLVHLGEYQAAVD 1242 (1630)
T ss_pred hhcCHHHHHHHH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh---------hHHHHHHHHHHHhCCHHHHHH
Confidence 444444322221 0 111122333444444444444444444432 244444444444444444444
Q ss_pred HHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010383 301 VLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 301 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
.+++. .+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|+.+++.....
T Consensus 1243 aarKA-------~n~~aWkev~~acve~~Ef~LA~~cgl~------Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~L 1309 (1630)
T 1xi4_A 1243 GARKA-------NSTRTWKEVCFACVDGKEFRLAQMCGLH------IVVHADELEELINYYQDRGYFEELITMLEAALGL 1309 (1630)
T ss_pred HHHHh-------CCHHHHHHHHHHHhhhhHHHHHHHHHHh------hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhcc
Confidence 44433 2234444444444444444444443321 1223344555666666666666666666655543
Q ss_pred CCCCChHhHHHHHHHHHhc--CCHHHHHHHHHHhhcCCCCC------CHHhHHHHHHHHHhcCCHHHHH
Q 010383 381 GVVADSTTYAIVIDGLCES--NQLDEAKRFWDDIVWPSNIH------DNYVYAAMIKGLCRSGKIHEAV 441 (512)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~--g~~~~a~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~g~~~~a~ 441 (512)
. +.....|+-+..+|++. ++..++.++|..-.. +++ +...|..+.-.|.+.|+++.|.
T Consensus 1310 e-raH~gmftELaiLyaKy~peklmEhlk~f~~rin--i~k~~r~~e~~~lW~elv~LY~~~~e~dnA~ 1375 (1630)
T 1xi4_A 1310 E-RAHMGMFTELAILYSKFKPQKMREHLELFWSRVN--IPKVLRAAEQAHLWAELVFLYDKYEEYDNAI 1375 (1630)
T ss_pred C-hhHhHHHHHHHHHHHhCCHHHHHHHHHHHHHhcc--cchHhHHHHHHHHHHHHHHHHHhcccHHHHH
Confidence 3 33334454455444443 233444444443221 111 3445666666666666666665
No 28
>1xi4_A Clathrin heavy chain; alpha-ZIG-ZAG, beta-propeller, endocytosis-exocyto complex; 7.90A {Bos taurus} SCOP: i.23.1.1 PDB: 1xi5_A 3iyv_A
Probab=99.81 E-value=2.5e-15 Score=149.09 Aligned_cols=383 Identities=12% Similarity=0.097 Sum_probs=292.9
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC--CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010383 28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV--LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 105 (512)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~--~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (512)
++.--...+++|+..|.+.+|+++++++...+- .-+...-+.++.+..+. +..+......++- ..
T Consensus 984 ~PeeVs~~vKaf~~aglp~EaieLLEKivl~~s~fs~n~~LqnlLi~tAIka-D~~Rv~eyI~kLd------------~~ 1050 (1630)
T 1xi4_A 984 DPEEVSVTVKAFMTADLPNELIELLEKIVLDNSVFSEHRNLQNLLILTAIKA-DRTRVMEYINRLD------------NY 1050 (1630)
T ss_pred CHHHhHHHHHHHHhCCCHHHHHHHHHHHHcCCCcccccHHHHHHHHHHHHHh-ChhhHHHHHHHhh------------hc
Confidence 444557788889999999999999999985421 12334455566666665 5565555443331 11
Q ss_pred hHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHh
Q 010383 106 AFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLC 185 (512)
Q Consensus 106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~ 185 (512)
....+...+...|.+++|..+|++... ...+.+.++ ...+++++|.++.++.. +..+|..+..++.
T Consensus 1051 d~~eIA~Iai~lglyEEAf~IYkKa~~-----~~~A~~VLi---e~i~nldrAiE~Aervn------~p~vWsqLAKAql 1116 (1630)
T 1xi4_A 1051 DAPDIANIAISNELFEEAFAIFRKFDV-----NTSAVQVLI---EHIGNLDRAYEFAERCN------EPAVWSQLAKAQL 1116 (1630)
T ss_pred cHHHHHHHHHhCCCHHHHHHHHHHcCC-----HHHHHHHHH---HHHhhHHHHHHHHHhcC------CHHHHHHHHHHHH
Confidence 123388889999999999999999642 112222232 27789999999988652 5789999999999
Q ss_pred ccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHH
Q 010383 186 KHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLN 265 (512)
Q Consensus 186 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 265 (512)
..|++++|.+.|.+. .|...|..++.++.+.|++++|.+++....+.. +++.....++.+|++.+++++...
T Consensus 1117 ~~G~~kEAIdsYiKA------dD~say~eVa~~~~~lGkyEEAIeyL~mArk~~--~e~~Idt~LafaYAKl~rleele~ 1188 (1630)
T 1xi4_A 1117 QKGMVKEAIDSYIKA------DDPSSYMEVVQAANTSGNWEELVKYLQMARKKA--RESYVETELIFALAKTNRLAELEE 1188 (1630)
T ss_pred hCCCHHHHHHHHHhc------CChHHHHHHHHHHHHcCCHHHHHHHHHHHHhhc--ccccccHHHHHHHHhhcCHHHHHH
Confidence 999999999999663 567788899999999999999999999887654 333344568899999998886554
Q ss_pred HHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC
Q 010383 266 VLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR 345 (512)
Q Consensus 266 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 345 (512)
.+ + .++...|..+...|...|++++|...|... ..|..+..++.+.|++++|.+.+.+.
T Consensus 1189 fI----~---~~n~ad~~~iGd~le~eg~YeeA~~~Y~kA----------~ny~rLA~tLvkLge~q~AIEaarKA---- 1247 (1630)
T 1xi4_A 1189 FI----N---GPNNAHIQQVGDRCYDEKMYDAAKLLYNNV----------SNFGRLASTLVHLGEYQAAVDGARKA---- 1247 (1630)
T ss_pred HH----h---CCCHHHHHHHHHHHHhcCCHHHHHHHHHhh----------hHHHHHHHHHHHhCCHHHHHHHHHHh----
Confidence 43 1 446677888999999999999999999975 36899999999999999999999874
Q ss_pred CCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010383 346 GYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425 (512)
Q Consensus 346 ~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 425 (512)
.+..+|..+..+|...|++..|...... +..++..+..++..|.+.|.+++|..+++..+... +-....|+
T Consensus 1248 ---~n~~aWkev~~acve~~Ef~LA~~cgl~-----Iiv~~deLeeli~yYe~~G~feEAI~LlE~aL~Le-raH~gmft 1318 (1630)
T 1xi4_A 1248 ---NSTRTWKEVCFACVDGKEFRLAQMCGLH-----IVVHADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFT 1318 (1630)
T ss_pred ---CCHHHHHHHHHHHhhhhHHHHHHHHHHh-----hhcCHHHHHHHHHHHHHcCCHHHHHHHHHHHhccC-hhHhHHHH
Confidence 3668999999999999999999887653 34567778899999999999999999999987665 55666787
Q ss_pred HHHHHHHhc--CCHHHHHHHHHHHHHCCCCC------ChhhHHHHHHHHHhcCCHHHHHH
Q 010383 426 AMIKGLCRS--GKIHEAVHFLYELVDSGVTP------NIVCYNVVIDGACKLSMKREAYQ 477 (512)
Q Consensus 426 ~l~~~~~~~--g~~~~a~~~~~~~~~~~~~p------~~~~~~~l~~~~~~~g~~~~a~~ 477 (512)
-|...|++- ++..++.+.|..-. +++| +...|.-++..|.+.|+++.|..
T Consensus 1319 ELaiLyaKy~peklmEhlk~f~~ri--ni~k~~r~~e~~~lW~elv~LY~~~~e~dnA~~ 1376 (1630)
T 1xi4_A 1319 ELAILYSKFKPQKMREHLELFWSRV--NIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 1376 (1630)
T ss_pred HHHHHHHhCCHHHHHHHHHHHHHhc--ccchHhHHHHHHHHHHHHHHHHHhcccHHHHHH
Confidence 787777764 34555555554322 2222 45679999999999999999983
No 29
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.81 E-value=1.2e-17 Score=149.42 Aligned_cols=154 Identities=9% Similarity=-0.051 Sum_probs=123.0
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010383 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
+...|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++
T Consensus 148 ~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~ 224 (327)
T 3cv0_A 148 FAAPNEYRECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR-PDDAQLWNKLGATLANGNRPQE 224 (327)
T ss_dssp TTSHHHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHcccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHH
Confidence 566777888888887766443 3456677778888888888888888888887754 4567788888889999999999
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-----------ChhhHHHHHHHHHhcCCHH
Q 010383 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-----------NIVCYNVVIDGACKLSMKR 473 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-----------~~~~~~~l~~~~~~~g~~~ 473 (512)
|...++++.+.. +.+..++..+...+...|++++|.+.++++.+..... +...|..+..++.+.|+++
T Consensus 225 A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 303 (327)
T 3cv0_A 225 ALDAYNRALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPD 303 (327)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHH
Confidence 999999887654 5567788889999999999999999999988754332 4678889999999999999
Q ss_pred HHHHHHHHH
Q 010383 474 EAYQILREM 482 (512)
Q Consensus 474 ~a~~~~~~m 482 (512)
+|..++++.
T Consensus 304 ~A~~~~~~~ 312 (327)
T 3cv0_A 304 LVELTYAQN 312 (327)
T ss_dssp HHHHHTTCC
T ss_pred HHHHHHHHH
Confidence 999988754
No 30
>3cv0_A Peroxisome targeting signal 1 receptor PEX5; TPR motifs, TPR protein, peroxin 5, PEX5, PTS1 binding domain, protein-peptide complex, receptor; 2.00A {Trypanosoma brucei} PDB: 3cvl_A 3cvn_A 3cvp_A 3cvq_A
Probab=99.80 E-value=2.4e-17 Score=147.47 Aligned_cols=281 Identities=13% Similarity=-0.008 Sum_probs=186.2
Q ss_pred cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHH
Q 010383 138 EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVE 217 (512)
Q Consensus 138 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 217 (512)
+...+..+...+...|++++|..+|+.+.+.... +..++..+..++...|++++|.+.++++.+.. +.+..++..+..
T Consensus 20 ~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 97 (327)
T 3cv0_A 20 YHENPMEEGLSMLKLANLAEAALAFEAVCQAAPE-REEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAV 97 (327)
T ss_dssp GSSCHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cCCHHHHHHHHH
Confidence 3445666777888888888888888888776433 56677888888888888888888888887754 446777888888
Q ss_pred HHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHH--HHHhcCCH
Q 010383 218 GLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVIN--GFCKMGRI 295 (512)
Q Consensus 218 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~--~~~~~~~~ 295 (512)
.+...|++++|.+.++.+..... .....+..+... .|+......+.. .+...|++
T Consensus 98 ~~~~~~~~~~A~~~~~~~~~~~~-~~~~~~~~~~~~----------------------~~~~~~~~~~~~~~~~~~~~~~ 154 (327)
T 3cv0_A 98 SHTNEHNANAALASLRAWLLSQP-QYEQLGSVNLQA----------------------DVDIDDLNVQSEDFFFAAPNEY 154 (327)
T ss_dssp HHHHTTCHHHHHHHHHHHHHTST-TTTTC------------------------------------------CCTTSHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHhHH----------------------HHHHHHHHHHHHhHHHHHcccH
Confidence 88888888888888888876432 222222222100 011111112212 25566777
Q ss_pred HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHH
Q 010383 296 EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFN 375 (512)
Q Consensus 296 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 375 (512)
++|...++++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...++
T Consensus 155 ~~A~~~~~~~~~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~ 230 (327)
T 3cv0_A 155 RECRTLLHAALEMN--PNDAQLHASLGVLYNLSNNYDSAAANLRRAVELR--PDDAQLWNKLGATLANGNRPQEALDAYN 230 (327)
T ss_dssp HHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHH
Confidence 77777777776654 4466667777777777777777777777665443 3345667777777777777777777777
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-----------CHHhHHHHHHHHHhcCCHHHHHHHH
Q 010383 376 CMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-----------DNYVYAAMIKGLCRSGKIHEAVHFL 444 (512)
Q Consensus 376 ~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-----------~~~~~~~l~~~~~~~g~~~~a~~~~ 444 (512)
++.+.. +.+..++..+..+|...|++++|...++++.+..... +..++..+..++...|++++|..++
T Consensus 231 ~a~~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~ 309 (327)
T 3cv0_A 231 RALDIN-PGYVRVMYNMAVSYSNMSQYDLAAKQLVRAIYMQVGGTTPTGEASREATRSMWDFFRMLLNVMNRPDLVELTY 309 (327)
T ss_dssp HHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHTTSCC-----CCTHHHHHHHHHHHHHHHTTCHHHHHHHT
T ss_pred HHHHcC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhCCccccccccchhhcCHHHHHHHHHHHHhcCCHHHHHHHH
Confidence 777653 4456677777777888888888888887776543111 4567777888888888888888777
Q ss_pred HHHH
Q 010383 445 YELV 448 (512)
Q Consensus 445 ~~~~ 448 (512)
++..
T Consensus 310 ~~~l 313 (327)
T 3cv0_A 310 AQNV 313 (327)
T ss_dssp TCCS
T ss_pred HHHH
Confidence 6543
No 31
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.80 E-value=4.7e-16 Score=146.74 Aligned_cols=400 Identities=10% Similarity=-0.043 Sum_probs=201.2
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----C---CCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcC
Q 010383 27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-----G---VLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE 98 (512)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~---~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 98 (512)
.....||.|...+...|++++|++.|++..+. + .+....+|+.+..+|...|++++|...+.++.+..+...
T Consensus 49 ~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~~~ 128 (472)
T 4g1t_A 49 FKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEKFS 128 (472)
T ss_dssp -CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSC
T ss_pred hHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHhcc
Confidence 34567888888888889998888888876441 1 122345677788888888888888877777665444322
Q ss_pred CC-C-cchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcch
Q 010383 99 DL-S-VNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS 176 (512)
Q Consensus 99 ~~-~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~ 176 (512)
+. . ....++..+..++... ..+++++|...|++..+..+. ++..
T Consensus 129 ~~~~~~~~~~~~~~g~~~~~~---------------------------------~~~~y~~A~~~~~kal~~~p~-~~~~ 174 (472)
T 4g1t_A 129 SPYRIESPELDCEEGWTRLKC---------------------------------GGNQNERAKVCFEKALEKKPK-NPEF 174 (472)
T ss_dssp CSSCCCCHHHHHHHHHHHHHH---------------------------------CTTHHHHHHHHHHHHHHHSTT-CHHH
T ss_pred cccchhhHHHHHHHHHHHHHH---------------------------------ccccHHHHHHHHHHHHHhCCC-CHHH
Confidence 11 1 1122233222222221 123445555555554443211 2223
Q ss_pred HHHHHHH---HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHh----ccCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010383 177 YNSIVHG---LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLC----GESDLEKARKVLQFMLSKKDVDRTRICNI 249 (512)
Q Consensus 177 ~~~l~~~---~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 249 (512)
+..+..+ +...++.++|++.+++.++.. +.+...+..+...+. ..|++++|.+.+++.... .+.....+..
T Consensus 175 ~~~~~~~~~~l~~~~~~~~al~~~~~al~l~-p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~-~~~~~~~~~~ 252 (472)
T 4g1t_A 175 TSGLAIASYRLDNWPPSQNAIDPLRQAIRLN-PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEK-APGVTDVLRS 252 (472)
T ss_dssp HHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC-SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHH-CSSCHHHHHH
T ss_pred HHHHHHHHHHhcCchHHHHHHHHHHHHhhcC-CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHh-CccHHHHHHH
Confidence 3322222 223444455555555555432 223333333332222 234455555555555432 2223334444
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC
Q 010383 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG 329 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 329 (512)
+...+...|++++|...+....+..+. +...+..+..+|...+... .... .... .......+
T Consensus 253 lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~lg~~y~~~~~~~---------~~~~--~~~~------~~~~~~~~ 314 (472)
T 4g1t_A 253 AAKFYRRKDEPDKAIELLKKALEYIPN-NAYLHCQIGCCYRAKVFQV---------MNLR--ENGM------YGKRKLLE 314 (472)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHSTT-CHHHHHHHHHHHHHHHHHH---------HHC--------------CHHHHHH
T ss_pred HHHHHHHcCchHHHHHHHHHHHHhCCC-hHHHHHHHHHHHHHHHHHh---------hhHH--HHHH------HHHHHHHh
Confidence 444555555555555555554444322 4455555555543221110 0000 0000 00011122
Q ss_pred CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH--hHHHHHH-HHHhcCCHHHHH
Q 010383 330 RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST--TYAIVID-GLCESNQLDEAK 406 (512)
Q Consensus 330 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~ 406 (512)
..+.|...+.+..... +.+...+..+...+...|++++|...|++..+....+... .+..+.. .+...|+.++|.
T Consensus 315 ~~~~A~~~~~~a~~~~--~~~~~~~~~lg~~~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai 392 (472)
T 4g1t_A 315 LIGHAVAHLKKADEAN--DNLFRVCSILASLHALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAI 392 (472)
T ss_dssp HHHHHHHHHHHHHHHC--TTTCCCHHHHHHHHHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHH
T ss_pred hHHHHHHHHHHHhhcC--CchhhhhhhHHHHHHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHH
Confidence 3567777777765444 4455678888899999999999999999998864333221 2333332 345678999999
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
..+++.++.. |+...... ....+.+++++.++.+ +.+..+|..+...+...|++++|++.|++.++.|
T Consensus 393 ~~y~kal~i~--~~~~~~~~---------~~~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~~~A~~~y~kALe~~ 460 (472)
T 4g1t_A 393 HHFIEGVKIN--QKSREKEK---------MKDKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKMQQADEDSERGLESG 460 (472)
T ss_dssp HHHHHHHHSC--CCCHHHHH---------HHHHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHCC-------------
T ss_pred HHHHHHHhcC--cccHHHHH---------HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC
Confidence 9999988753 43322221 2234455666666654 4477899999999999999999999999998753
Q ss_pred -CCCChHHH
Q 010383 487 -LNPDAVTW 494 (512)
Q Consensus 487 -~~p~~~~~ 494 (512)
..|+..+|
T Consensus 461 ~~~p~a~~~ 469 (472)
T 4g1t_A 461 SLIPSASSW 469 (472)
T ss_dssp ---------
T ss_pred CCCCcHhhc
Confidence 23444444
No 32
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.79 E-value=4e-17 Score=142.15 Aligned_cols=197 Identities=12% Similarity=0.107 Sum_probs=113.1
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010383 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356 (512)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 356 (512)
|+..++..+...+...++.++|++.++++...+..+.+...+..+...+...|++++|++.+.+ +.+...+..
T Consensus 63 ~~~~a~~~la~~~~~~~~~~~A~~~l~~ll~~~~~P~~~~~~~~la~~~~~~g~~~~Al~~l~~-------~~~~~~~~~ 135 (291)
T 3mkr_A 63 PELQAVRMFAEYLASHSRRDAIVAELDREMSRSVDVTNTTFLLMAASIYFYDQNPDAALRTLHQ-------GDSLECMAM 135 (291)
T ss_dssp HHHHHHHHHHHHHHCSTTHHHHHHHHHHHHHSCCCCSCHHHHHHHHHHHHHTTCHHHHHHHHTT-------CCSHHHHHH
T ss_pred hhHHHHHHHHHHHcCCCcHHHHHHHHHHHHhcccCCCCHHHHHHHHHHHHHCCCHHHHHHHHhC-------CCCHHHHHH
Confidence 3445555566666666666666666666654331133445555555666666666666666643 345556666
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhH---HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010383 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTY---AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~---~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (512)
++..+.+.|++++|...++++.+.. |+.... ..++..+...|++++|..+|+++.+.. +.+...++.+..++..
T Consensus 136 l~~~~~~~g~~~~A~~~l~~~~~~~--p~~~~~~l~~a~~~l~~~~~~~~eA~~~~~~~l~~~-p~~~~~~~~la~~~~~ 212 (291)
T 3mkr_A 136 TVQILLKLDRLDLARKELKKMQDQD--EDATLTQLATAWVSLAAGGEKLQDAYYIFQEMADKC-SPTLLLLNGQAACHMA 212 (291)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHhhC--cCcHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHH
Confidence 6666666666666666666666542 332211 112233334466666666666666543 4556666666666666
Q ss_pred cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH-HHHHHHHHHH
Q 010383 434 SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE-AYQILREMRK 484 (512)
Q Consensus 434 ~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~-a~~~~~~m~~ 484 (512)
.|++++|...+++.++.. +-+..++..++..+...|+.++ +.++++++.+
T Consensus 213 ~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~~~~~~~ 263 (291)
T 3mkr_A 213 QGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRYLSQLKD 263 (291)
T ss_dssp TTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHH
Confidence 666666666666666553 2255566666666666666654 4566666655
No 33
>3mkr_A Coatomer subunit epsilon; tetratricopeptide repeats (TPR), beta-hairpin, alpha-solenoi transport protein; 2.60A {Bos taurus}
Probab=99.78 E-value=4.1e-17 Score=142.07 Aligned_cols=83 Identities=12% Similarity=0.061 Sum_probs=37.6
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH-HHHH
Q 010383 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE-AVHF 443 (512)
Q Consensus 365 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~ 443 (512)
|++++|..+|+++.+. .+.+...++.+..++.+.|++++|...++++++.. +.+..++..++..+...|+.++ +.++
T Consensus 180 ~~~~eA~~~~~~~l~~-~p~~~~~~~~la~~~~~~g~~~eA~~~l~~al~~~-p~~~~~l~~l~~~~~~~g~~~eaa~~~ 257 (291)
T 3mkr_A 180 EKLQDAYYIFQEMADK-CSPTLLLLNGQAACHMAQGRWEAAEGVLQEALDKD-SGHPETLINLVVLSQHLGKPPEVTNRY 257 (291)
T ss_dssp THHHHHHHHHHHHHHH-SCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred hHHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCCHHHHHHH
Confidence 4444444444444443 13344444444444444445555554444444332 3344444444444444444433 3344
Q ss_pred HHHHHH
Q 010383 444 LYELVD 449 (512)
Q Consensus 444 ~~~~~~ 449 (512)
++++.+
T Consensus 258 ~~~~~~ 263 (291)
T 3mkr_A 258 LSQLKD 263 (291)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 444444
No 34
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.75 E-value=2.1e-18 Score=165.47 Aligned_cols=151 Identities=13% Similarity=0.117 Sum_probs=112.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHh---CCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLG---IGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAA 426 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 426 (512)
...||+++|.+|++.|++++|..+|++|.+ .|+.||..|||.||.+|++.|++++|.++|++|.+.|+.||..||++
T Consensus 126 ~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTYnt 205 (1134)
T 3spa_A 126 QQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSYAA 205 (1134)
T ss_dssp HHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHHHH
T ss_pred HHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHHHH
Confidence 345788888888888888888888877653 46788888888888888888888888888888888888888888888
Q ss_pred HHHHHHhcCC-HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC------hHHHHHHHH
Q 010383 427 MIKGLCRSGK-IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD------AVTWRILDK 499 (512)
Q Consensus 427 l~~~~~~~g~-~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~------~~~~~~l~~ 499 (512)
+|.++++.|+ .++|.++|++|.+.|+.||..+|++++.++.+. .+++.++++ .-++.|+ ..|...|.+
T Consensus 206 LI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll~~~eR~----~vL~~Vrkv-~P~f~p~~~~~~~~~t~~LL~d 280 (1134)
T 3spa_A 206 ALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLLSEEDRA----TVLKAVHKV-KPTFSLPPQLPPPVNTSKLLRD 280 (1134)
T ss_dssp HHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCCCHHHHH----HHHHHHGGG-CCCCCCCCCCCCCCCCCTTTHH
T ss_pred HHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhcccccChhhHH----HHHHHHHHh-CcccCCCCCCcccccchHHHHH
Confidence 8888888877 467788888888888888888888887666553 344444444 3345554 344555666
Q ss_pred hhccCC
Q 010383 500 LHGNRG 505 (512)
Q Consensus 500 ~~~~~g 505 (512)
.|.+.+
T Consensus 281 l~s~d~ 286 (1134)
T 3spa_A 281 VYAKDG 286 (1134)
T ss_dssp HHCCCS
T ss_pred HHccCC
Confidence 666554
No 35
>3spa_A Mtrpol, DNA-directed RNA polymerase, mitochondrial; single-subunit DNA-dependent RNA polymerase in mitochondria, transferase; 2.50A {Homo sapiens}
Probab=99.73 E-value=2.7e-17 Score=157.96 Aligned_cols=116 Identities=19% Similarity=0.255 Sum_probs=107.5
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHhh---cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010383 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIV---WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~---~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 459 (512)
..-..||++||++|++.|++++|.++|++|. ..|..||..+||+||.+|++.|++++|.++|++|.+.|+.||..||
T Consensus 124 ~~~~~TynaLIdglcK~G~leeA~~Lf~eM~~m~~kG~~PdvvTYNtLI~Glck~G~~~eA~~Lf~eM~~~G~~PDvvTY 203 (1134)
T 3spa_A 124 SGQQQRLLAFFKCCLLTDQLPLAHHLLVVHHGQRQKRKLLTLDMYNAVMLGWARQGAFKELVYVLFMVKDAGLTPDLLSY 203 (1134)
T ss_dssp CHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHSHHHHTTCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTTCCCCHHHH
T ss_pred HhHHHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhhcCCCCCHhHHHHHHHHHHhCCCHHHHHHHHHHHHHcCCCCcHHHH
Confidence 3445689999999999999999999998875 4578999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHhcCCH-HHHHHHHHHHHHCCCCCChHHHHHHH
Q 010383 460 NVVIDGACKLSMK-REAYQILREMRKNGLNPDAVTWRILD 498 (512)
Q Consensus 460 ~~l~~~~~~~g~~-~~a~~~~~~m~~~~~~p~~~~~~~l~ 498 (512)
+++|.++++.|+. ++|.+++++|.+.|+.||..||++++
T Consensus 204 ntLI~glcK~G~~~e~A~~Ll~EM~~kG~~PD~vtY~~ll 243 (1134)
T 3spa_A 204 AAALQCMGRQDQDAGTIERCLEQMSQEGLKLQALFTAVLL 243 (1134)
T ss_dssp HHHHHHHHHHTCCHHHHHHHHHHHHHHTCCSHHHHHHSCC
T ss_pred HHHHHHHHhCCCcHHHHHHHHHHHHHcCCCCChhhccccc
Confidence 9999999999985 78999999999999999999999544
No 36
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.72 E-value=4.2e-15 Score=138.20 Aligned_cols=102 Identities=14% Similarity=-0.002 Sum_probs=32.7
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCCh---hHHHHHHHhcCCCCCCCcchhHHHHH
Q 010383 70 LVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYV---NEVFRIAEDMPQGKSVNEEFACGHMI 146 (512)
Q Consensus 70 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~~~~~~~~~l~ 146 (512)
+...+.+.|++++|...+.++.+. + +...+..|...|...|+. ++|...|++..+. +...+..+.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~-----g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~----~~~A~~~Lg 76 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAEL-----G---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT----SPRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH-----T---CCTGGGTCC--------------------------------CHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHC-----C---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC----CHHHHHHHH
Confidence 444555555555555555544321 1 122223344444444444 5555555554432 223333343
Q ss_pred HHHHhcC-----ChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhc
Q 010383 147 DSLCRSG-----RNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCK 186 (512)
Q Consensus 147 ~~~~~~~-----~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~ 186 (512)
..+...+ ++++|...|+...+.|. ...+..|...|..
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~ 118 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQ 118 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHh
Confidence 3233332 44455555555554431 2244444444443
No 37
>3e4b_A ALGK; tetratricopeptide repeat, superhelix, alginate biosynt pseudomonas, protein binding; 2.50A {Pseudomonas fluorescens}
Probab=99.71 E-value=3.4e-15 Score=138.79 Aligned_cols=378 Identities=11% Similarity=-0.009 Sum_probs=198.0
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh---hhHHHHHHHHHHHhhhcCCCCcchHhHHHHH
Q 010383 35 LIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV---ERANVLMFKLWERMKEEEDLSVNNAAFANLV 111 (512)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~---~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~ 111 (512)
+...+.+.|++++|..+|++..+.| ++..+..+...+...|+. ++|...+.+..+. +...+..|.
T Consensus 9 la~~~~~~g~~~~A~~~~~~aa~~g---~~~A~~~Lg~~y~~~g~~~d~~~A~~~~~~A~~~---------~~~A~~~Lg 76 (452)
T 3e4b_A 9 LANEALKRGDTVTAQQNYQQLAELG---YSEAQVGLADIQVGTRDPAQIKQAEATYRAAADT---------SPRAQARLG 76 (452)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHT---CCTGGGTCC-------------------------------------CHHHHH
T ss_pred HHHHHHhCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHccCCCCCHHHHHHHHHHHHhC---------CHHHHHHHH
Confidence 4444555566666666666655543 233333444444444554 5555555544321 223334444
Q ss_pred HHHHccC-----ChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhh---HHHHHHHHHHcCCCCCcchHHHHHHH
Q 010383 112 DSLCREG-----YVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHG---ASRVVYVMRKRGLTPSLVSYNSIVHG 183 (512)
Q Consensus 112 ~~~~~~g-----~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~---a~~~~~~~~~~g~~p~~~~~~~l~~~ 183 (512)
..+...+ ++++|+..|++....+. ..++..|...|...+.... +.+.+......| ++..+..+...
T Consensus 77 ~~~~~~~~~~~~~~~~A~~~~~~Aa~~g~---~~A~~~Lg~~y~~~~~~~~~~~a~~~~~~a~~~g---~~~a~~~Lg~~ 150 (452)
T 3e4b_A 77 RLLAAKPGATEAEHHEAESLLKKAFANGE---GNTLIPLAMLYLQYPHSFPNVNAQQQISQWQAAG---YPEAGLAQVLL 150 (452)
T ss_dssp HHHHTC--CCHHHHHHHHHHHHHHHHTTC---SSCHHHHHHHHHHCGGGCTTCCHHHHHHHHHHHT---CTTHHHHHHHH
T ss_pred HHHHhCCCCCCcCHHHHHHHHHHHHHCCC---HHHHHHHHHHHHhCCCCCCCHHHHHHHHHHHHCC---CHHHHHHHHHH
Confidence 4333333 55566666666555432 1245555555555444333 344444444433 34556666666
Q ss_pred HhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC---CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc---
Q 010383 184 LCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES---DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI--- 257 (512)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 257 (512)
|...+.++++........+.-...++..+..+...|...| +.++|.+.|++..+.+. +....+..+...|...
T Consensus 151 y~~~~~~~~~~~~a~~~~~~a~~~~~~a~~~Lg~~~~~~g~~~~~~~A~~~~~~aa~~g~-~~a~~~~~Lg~~y~~g~~~ 229 (452)
T 3e4b_A 151 YRTQGTYDQHLDDVERICKAALNTTDICYVELATVYQKKQQPEQQAELLKQMEAGVSRGT-VTAQRVDSVARVLGDATLG 229 (452)
T ss_dssp HHHHTCGGGGHHHHHHHHHHHTTTCTTHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTC-SCHHHHHHHHHHHTCGGGS
T ss_pred HHcCCCcccCHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcccHHHHHHHHHHHHHCCC-HHHHHHHHHHHHHhCCCCC
Confidence 6666644444443322222211223336666777777777 77777777777766542 2222234445555443
Q ss_pred -CChhhHHHHHHHHHhcCCCCChhhHHHHHHH-H--HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC----
Q 010383 258 -KNPTELLNVLVFMLQTQCQPDVITLNTVING-F--CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG---- 329 (512)
Q Consensus 258 -~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~--~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~---- 329 (512)
+++++|..+|+... . -++..+..+... + ...+++++|...|++..+.+ +...+..+...|. .|
T Consensus 230 ~~d~~~A~~~~~~aa-~---g~~~a~~~Lg~~~~~~~~~~d~~~A~~~~~~Aa~~g----~~~A~~~Lg~~y~-~G~g~~ 300 (452)
T 3e4b_A 230 TPDEKTAQALLEKIA-P---GYPASWVSLAQLLYDFPELGDVEQMMKYLDNGRAAD----QPRAELLLGKLYY-EGKWVP 300 (452)
T ss_dssp SCCHHHHHHHHHHHG-G---GSTHHHHHHHHHHHHSGGGCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHH-HCSSSC
T ss_pred CCCHHHHHHHHHHHc-C---CCHHHHHHHHHHHHhCCCCCCHHHHHHHHHHHHHCC----CHHHHHHHHHHHH-cCCCCC
Confidence 56777777777766 2 245555666665 3 45788888888888887643 5556666666665 44
Q ss_pred -CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cC
Q 010383 330 -RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SN 400 (512)
Q Consensus 330 -~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g 400 (512)
++++|..+|.+.. +-++..+..+...|.. ..++++|...|++..+.| +......|..+|.. ..
T Consensus 301 ~d~~~A~~~~~~Aa-----~g~~~A~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~A~~~Lg~~y~~G~g~~~ 372 (452)
T 3e4b_A 301 ADAKAAEAHFEKAV-----GREVAADYYLGQIYRRGYLGKVYPQKALDHLLTAARNG---QNSADFAIAQLFSQGKGTKP 372 (452)
T ss_dssp CCHHHHHHHHHTTT-----TTCHHHHHHHHHHHHTTTTSSCCHHHHHHHHHHHHTTT---CTTHHHHHHHHHHSCTTBCC
T ss_pred CCHHHHHHHHHHHh-----CCCHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHhhC---hHHHHHHHHHHHHhCCCCCC
Confidence 8888888887754 3355666666666655 347888888888887765 33445566666654 34
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
+.++|...++...+.| .++.......+......++..+|..+.++..+
T Consensus 373 d~~~A~~~~~~A~~~g-~~~a~~~l~~l~~~~~~~~~~~a~~~~~~~~~ 420 (452)
T 3e4b_A 373 DPLNAYVFSQLAKAQD-TPEANDLATQLEAPLTPAQRAEGQRLVQQELA 420 (452)
T ss_dssp CHHHHHHHHHHHHTTC-CHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCC-CHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7788888888877665 23222222222222233455566666665544
No 38
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.71 E-value=1.3e-15 Score=126.77 Aligned_cols=200 Identities=12% Similarity=0.027 Sum_probs=147.8
Q ss_pred CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHH
Q 010383 276 QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYN 355 (512)
Q Consensus 276 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 355 (512)
+++...+..+...+.+.|++++|+..|++..+.. +.+...+..+...+...|++++|+..+++.+... +.+...+.
T Consensus 2 p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~ 77 (217)
T 2pl2_A 2 QTAEQNPLRLGVQLYALGRYDAALTLFERALKEN--PQDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYM 77 (217)
T ss_dssp --CCHHHHHHHHHHHHTTCHHHHHHHHHHHHTTS--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHH
Confidence 3456677777778888888888888888887765 5677778888888888888888888888766544 44556777
Q ss_pred HHHHHHHcc-----------CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhH
Q 010383 356 AVLRGLFRL-----------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVY 424 (512)
Q Consensus 356 ~l~~~~~~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 424 (512)
.+...+... |++++|...+++..+.. |.+...+..+..++...|++++|...++++++.+ .+...+
T Consensus 78 ~lg~~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~ 154 (217)
T 2pl2_A 78 VLSEAYVALYRQAEDRERGKGYLEQALSVLKDAERVN-PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIR 154 (217)
T ss_dssp HHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHH
T ss_pred HHHHHHHHhhhhhhhhcccccCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHH
Confidence 777777777 99999999999988864 4567788888899999999999999999988776 677888
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 425 AAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 425 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
..+..+|...|++++|...|++..+.. +.+...+..+...+.+.|++++|.+.+++..
T Consensus 155 ~~la~~~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 155 SALAELYLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 889999999999999999999988864 3367788888899999999999998888754
No 39
>4g1t_A Interferon-induced protein with tetratricopeptide 2; ISG, all alpha helix, antivirus, antiviral protein; 2.80A {Homo sapiens}
Probab=99.71 E-value=3.9e-14 Score=133.54 Aligned_cols=373 Identities=12% Similarity=-0.033 Sum_probs=194.3
Q ss_pred CCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC--------CCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc---
Q 010383 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG--------KSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--- 168 (512)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~--------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--- 168 (512)
.......|+.|...+...|++++|++.|++..+. ..+....+|+.+..+|...|++++|...+++..+.
T Consensus 47 ~~~~a~~yn~Lg~~~~~~G~~~eAl~~~~kAl~~~~~~~~~~~~~~~~~~~~nla~~y~~~g~~~~A~~~~~ka~~i~~~ 126 (472)
T 4g1t_A 47 REFKATMCNLLAYLKHLKGQNEAALECLRKAEELIQQEHADQAEIRSLVTWGNYAWVYYHMGRLSDVQIYVDKVKHVCEK 126 (472)
T ss_dssp ---CCHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSGGGCTTTTHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHH
T ss_pred ChhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhcCccccchHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhHh
Confidence 3344456667777777777777777776654221 01122345556666666666666666666654431
Q ss_pred --C-CCC-CcchHHHHHHHHhc--cCchhHHHHHHHHHHhCCCCCchhhHHHHHHH---HhccCCHHHHHHHHHHHHhCC
Q 010383 169 --G-LTP-SLVSYNSIVHGLCK--HGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEG---LCGESDLEKARKVLQFMLSKK 239 (512)
Q Consensus 169 --g-~~p-~~~~~~~l~~~~~~--~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~---~~~~g~~~~a~~~~~~~~~~~ 239 (512)
+ ..+ ...++.....++.. .+++++|++.|+++.+.. +.++..+..+..+ +...++.++|.+.+++..+..
T Consensus 127 ~~~~~~~~~~~~~~~~g~~~~~~~~~~y~~A~~~~~kal~~~-p~~~~~~~~~~~~~~~l~~~~~~~~al~~~~~al~l~ 205 (472)
T 4g1t_A 127 FSSPYRIESPELDCEEGWTRLKCGGNQNERAKVCFEKALEKK-PKNPEFTSGLAIASYRLDNWPPSQNAIDPLRQAIRLN 205 (472)
T ss_dssp SCCSSCCCCHHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHSCCCCCTHHHHHHHHHHC
T ss_pred cccccchhhHHHHHHHHHHHHHHccccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCchHHHHHHHHHHHHhhcC
Confidence 0 011 12334433333332 335666666666665543 2233333333332 223455555555555554321
Q ss_pred CCCCcccHHHHHHHHH----ccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH
Q 010383 240 DVDRTRICNIYLRALC----LIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA 315 (512)
Q Consensus 240 ~~~~~~~~~~l~~~~~----~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 315 (512)
+.+...+..+...+. ..++.++|...++......+. +...+..+...|...|++++|...+++..+.. +.+.
T Consensus 206 -p~~~~~~~~l~~~~~~~~~~~~~~~~a~~~~~~al~~~~~-~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~ 281 (472)
T 4g1t_A 206 -PDNQYLKVLLALKLHKMREEGEEEGEGEKLVEEALEKAPG-VTDVLRSAAKFYRRKDEPDKAIELLKKALEYI--PNNA 281 (472)
T ss_dssp -SSCHHHHHHHHHHHHHCC------CHHHHHHHHHHHHCSS-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCH
T ss_pred -CcchHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHhCcc-HHHHHHHHHHHHHHcCchHHHHHHHHHHHHhC--CChH
Confidence 222223333322222 234455555555555544322 44455555555555566666665555555443 3344
Q ss_pred HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010383 316 VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395 (512)
Q Consensus 316 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (512)
.++..+..+|...+....+.. ...... .....+..+.|...++...+.. +.+..++..+...
T Consensus 282 ~~~~~lg~~y~~~~~~~~~~~-----------~~~~~~------~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~lg~~ 343 (472)
T 4g1t_A 282 YLHCQIGCCYRAKVFQVMNLR-----------ENGMYG------KRKLLELIGHAVAHLKKADEAN-DNLFRVCSILASL 343 (472)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-----------------C------HHHHHHHHHHHHHHHHHHHHHC-TTTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhhHH-----------HHHHHH------HHHHHhhHHHHHHHHHHHhhcC-CchhhhhhhHHHH
Confidence 444444443321111000000 000000 0011233677888888888754 5567788999999
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCHH--hHHHHHH-HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 010383 396 LCESNQLDEAKRFWDDIVWPSNIHDNY--VYAAMIK-GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472 (512)
Q Consensus 396 ~~~~g~~~~a~~~~~~~~~~~~~~~~~--~~~~l~~-~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 472 (512)
|...|++++|...|+++++....+... .+..+.. .....|++++|+..|.+.++. .|+..... +..
T Consensus 344 ~~~~~~~~~A~~~~~kaL~~~~~~~~~~~~~~~~~~~~~~~~~~~~~Ai~~y~kal~i--~~~~~~~~---------~~~ 412 (472)
T 4g1t_A 344 HALADQYEEAEYYFQKEFSKELTPVAKQLLHLRYGNFQLYQMKCEDKAIHHFIEGVKI--NQKSREKE---------KMK 412 (472)
T ss_dssp HHHTTCHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHHS--CCCCHHHH---------HHH
T ss_pred HHHhccHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CcccHHHH---------HHH
Confidence 999999999999999998765333221 2333333 234679999999999999886 44433222 223
Q ss_pred HHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCCC
Q 010383 473 REAYQILREMRKNGLNPDAVTWRILDKLHGNRGND 507 (512)
Q Consensus 473 ~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~~ 507 (512)
..+.++++.....+ +.+..+|..|..+|...|+.
T Consensus 413 ~~l~~~~~~~l~~~-p~~~~~~~~LG~~~~~~g~~ 446 (472)
T 4g1t_A 413 DKLQKIAKMRLSKN-GADSEALHVLAFLQELNEKM 446 (472)
T ss_dssp HHHHHHHHHHHHHC-C-CTTHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCH
Confidence 44556666666543 45677888888888776654
No 40
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.70 E-value=3.8e-15 Score=128.16 Aligned_cols=223 Identities=13% Similarity=0.105 Sum_probs=160.8
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCc----HHHHHHH
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APD----AVTFTTI 321 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~----~~~~~~l 321 (512)
+..+...+...|++++|...+....+.. .+...+..+..++...|++++|...+++..+.... .++ ...+..+
T Consensus 8 ~~~~g~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~l 85 (258)
T 3uq3_A 8 EKAEGNKFYKARQFDEAIEHYNKAWELH--KDITYLNNRAAAEYEKGEYETAISTLNDAVEQGREMRADYKVISKSFARI 85 (258)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS--CCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHhccHHHHHHHHHHHHHhh--ccHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccccchHHHHHHHHHH
Confidence 3334444455555555555555555544 45666777777777777777777777776653210 011 4667777
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010383 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (512)
...+...|++++|...+.+.+.. .|+. ..+...|++++|...++.+.... +.+...+..+...+...|+
T Consensus 86 ~~~~~~~~~~~~A~~~~~~a~~~---~~~~-------~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 154 (258)
T 3uq3_A 86 GNAYHKLGDLKKTIEYYQKSLTE---HRTA-------DILTKLRNAEKELKKAEAEAYVN-PEKAEEARLEGKEYFTKSD 154 (258)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH---CCCH-------HHHHHHHHHHHHHHHHHHHHHCC-HHHHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcccHHHHHHHHHHHHhc---Cchh-------HHHHHHhHHHHHHHHHHHHHHcC-cchHHHHHHHHHHHHHhcC
Confidence 77888888888888888776543 2332 34556677888888888888753 4455678888888889999
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (512)
+++|...++++.+.. +.+..++..+..++...|++++|...+++..+.. +.+...|..+...+...|++++|.+.+++
T Consensus 155 ~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~ 232 (258)
T 3uq3_A 155 WPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDA 232 (258)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHH
Confidence 999999999888764 5567788888999999999999999999988864 33577888889999999999999999988
Q ss_pred HHH
Q 010383 482 MRK 484 (512)
Q Consensus 482 m~~ 484 (512)
..+
T Consensus 233 a~~ 235 (258)
T 3uq3_A 233 ART 235 (258)
T ss_dssp HHH
T ss_pred HHH
Confidence 875
No 41
>3uq3_A Heat shock protein STI1; HSP90, peptide binding, chaperone; 2.60A {Saccharomyces cerevisiae}
Probab=99.68 E-value=3.7e-15 Score=128.23 Aligned_cols=119 Identities=10% Similarity=-0.021 Sum_probs=62.3
Q ss_pred cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 010383 328 VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407 (512)
Q Consensus 328 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 407 (512)
.|++++|...+.+..... +.+...+..+...+...|++++|...++++.+.. +.+..++..+..+|...|++++|..
T Consensus 118 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~ 194 (258)
T 3uq3_A 118 LRNAEKELKKAEAEAYVN--PEKAEEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIA 194 (258)
T ss_dssp HHHHHHHHHHHHHHHHCC--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HhHHHHHHHHHHHHHHcC--cchHHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHhCCHHHHHH
Confidence 344444444444433211 2223344445555555555555555555555432 3344555555666666666666666
Q ss_pred HHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 408 FWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 408 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.++++++.. +.+...+..+..++...|++++|...+++..+.
T Consensus 195 ~~~~al~~~-~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~ 236 (258)
T 3uq3_A 195 DCNKAIEKD-PNFVRAYIRKATAQIAVKEYASALETLDAARTK 236 (258)
T ss_dssp HHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-HHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHh
Confidence 666655443 334555666666666666666666666665543
No 42
>2pl2_A Hypothetical conserved protein TTC0263; TPR, protein binding; 2.50A {Thermus thermophilus}
Probab=99.68 E-value=4.2e-15 Score=123.62 Aligned_cols=194 Identities=14% Similarity=0.029 Sum_probs=123.0
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
+..+...+...|++++|...++..++..+ .+...+..+..++.+.|++++|+..+++..+.. +.+...+..+...+.
T Consensus 8 ~~~lg~~~~~~g~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~lg~~~~ 84 (217)
T 2pl2_A 8 PLRLGVQLYALGRYDAALTLFERALKENP-QDPEALYWLARTQLKLGLVNPALENGKTLVART--PRYLGGYMVLSEAYV 84 (217)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTTSS-SCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHH
Confidence 33333444444444444444444443332 255666677777777777777777777776654 456666777777777
Q ss_pred hc-----------CCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010383 327 NV-----------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395 (512)
Q Consensus 327 ~~-----------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (512)
.. |++++|+..+.+.+... +.+...+..+..++...|++++|+..|++..+.. .+...+..+..+
T Consensus 85 ~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--P~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--~~~~~~~~la~~ 160 (217)
T 2pl2_A 85 ALYRQAEDRERGKGYLEQALSVLKDAERVN--PRYAPLHLQRGLVYALLGERDKAEASLKQALALE--DTPEIRSALAEL 160 (217)
T ss_dssp HHHHTCSSHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HhhhhhhhhcccccCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCChHHHHHHHHHHHhcc--cchHHHHHHHHH
Confidence 77 88888888887766543 3345667777778888888888888888887765 667777888888
Q ss_pred HHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 396 LCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 396 ~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
|...|++++|...++++++.. +.+...+..+...+...|++++|...+++..
T Consensus 161 ~~~~g~~~~A~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~~ 212 (217)
T 2pl2_A 161 YLSMGRLDEALAQYAKALEQA-PKDLDLRVRYASALLLKGKAEEAARAAALEH 212 (217)
T ss_dssp HHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHTC---------------
T ss_pred HHHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHccCHHHHHHHHHHHh
Confidence 888888888888888887654 5566777788888888888888888776653
No 43
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=3.4e-14 Score=123.21 Aligned_cols=200 Identities=9% Similarity=-0.005 Sum_probs=96.2
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010383 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFC-APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR 359 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (512)
.+..+..++...|++++|+..+++....... ......|..+...+...|++++|...+.+.+... +.+...+..+..
T Consensus 39 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~ 116 (272)
T 3u4t_A 39 IYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKKGQDSLAIQQYQAAVDRD--TTRLDMYGQIGS 116 (272)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHH
T ss_pred HHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhcC--cccHHHHHHHHH
Confidence 4444444455555555555555554442100 0012224444455555555555555555444322 223344455555
Q ss_pred HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC---
Q 010383 360 GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK--- 436 (512)
Q Consensus 360 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--- 436 (512)
.+...|++++|...+++..+.. +.+...+..+...+...+++++|...++++.+.. +.+...+..+..++...|+
T Consensus 117 ~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~ 194 (272)
T 3u4t_A 117 YFYNKGNFPLAIQYMEKQIRPT-TTDPKVFYELGQAYYYNKEYVKADSSFVKVLELK-PNIYIGYLWRARANAAQDPDTK 194 (272)
T ss_dssp HHHHTTCHHHHHHHHGGGCCSS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCS
T ss_pred HHHHccCHHHHHHHHHHHhhcC-CCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCcchh
Confidence 5555555555555555554432 3333444444422222335555555555555432 3334455555555555555
Q ss_pred HHHHHHHHHHHHHCC-CCCC------hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 437 IHEAVHFLYELVDSG-VTPN------IVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 437 ~~~a~~~~~~~~~~~-~~p~------~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+++|...+++..+.. -.|+ ..+|..+...|...|++++|.+.++++.+
T Consensus 195 ~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~ 249 (272)
T 3u4t_A 195 QGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADAAWKNILA 249 (272)
T ss_dssp SCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 555555555554421 0122 13455566666666777777777766665
No 44
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.67 E-value=2.3e-14 Score=122.75 Aligned_cols=211 Identities=13% Similarity=0.043 Sum_probs=155.1
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010383 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358 (512)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 358 (512)
...+..+...+...|++++|...|+++.... +.+...+..+...+...|++++|.+.+.+.+... +.+...+..+.
T Consensus 37 ~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la 112 (252)
T 2ho1_A 37 RDAYIQLGLGYLQRGNTEQAKVPLRKALEID--PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYG 112 (252)
T ss_dssp HHHHHHHHHHHHHTTCTGGGHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCChHHHHHHHHHHHhcC--CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHH
Confidence 4456667777777788888888887777654 4566777777777888888888888887765443 33566677777
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010383 359 RGLFRLRRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (512)
..+...|++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|++
T Consensus 113 ~~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~ 191 (252)
T 2ho1_A 113 GFLYEQKRYEEAYQRLLEASQDTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREY 191 (252)
T ss_dssp HHHHHTTCHHHHHHHHHHHTTCTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHhHHHHHHHHHHHHHhCccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCH
Confidence 77888888888888888877632233 45567777888888888888888888887654 44667788888888888888
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010383 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 438 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
++|...++++.+.. +.+...+..+...+...|++++|.++++++.+. .|+...+..+
T Consensus 192 ~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~--~p~~~~~~~~ 248 (252)
T 2ho1_A 192 VPARQYYDLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRL--YPGSLEYQEF 248 (252)
T ss_dssp HHHHHHHHHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTSHHHHHH
T ss_pred HHHHHHHHHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHH--CCCCHHHHHH
Confidence 88888888887754 345667778888888888888888888888773 4555544433
No 45
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.67 E-value=4.5e-14 Score=118.54 Aligned_cols=213 Identities=9% Similarity=-0.025 Sum_probs=170.3
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 357 (512)
+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l 82 (225)
T 2vq2_A 7 VSNIKTQLAMEYMRGQDYRQATASIEDALKSD--PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNY 82 (225)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHHhhHHHHHHHHHHHHHhC--ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHH
Confidence 45667778888888899999999998888765 5567788888888899999999999988876543 4456778888
Q ss_pred HHHHHcc-CCHHHHHHHHHHHHhCCCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC
Q 010383 358 LRGLFRL-RRVEEAKEVFNCMLGIGVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG 435 (512)
Q Consensus 358 ~~~~~~~-~~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 435 (512)
...+... |++++|...++++.+.+..| +...+..+..++...|++++|...++++.+.. +.+...+..+...+...|
T Consensus 83 ~~~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~ 161 (225)
T 2vq2_A 83 GWFLCGRLNRPAESMAYFDKALADPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAG 161 (225)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHTSTTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHT
T ss_pred HHHHHHhcCcHHHHHHHHHHHHcCcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcC
Confidence 8888899 99999999999988732223 35678888889999999999999999988754 456778888999999999
Q ss_pred CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010383 436 KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 436 ~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
++++|...++++.+.....+...+..+...+...|+.+.|..+++.+.+ ..|+......+
T Consensus 162 ~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~--~~p~~~~~~~~ 221 (225)
T 2vq2_A 162 QLGDADYYFKKYQSRVEVLQADDLLLGWKIAKALGNAQAAYEYEAQLQA--NFPYSEELQTV 221 (225)
T ss_dssp CHHHHHHHHHHHHHHHCSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HCTTCHHHHHH
T ss_pred CHHHHHHHHHHHHHhCCCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHH--hCCCCHHHHHH
Confidence 9999999999988865324677788888888899999999999999876 35665554444
No 46
>3u4t_A TPR repeat-containing protein; structural genomics, PSI- protein structure initiative, northeast structural genomics consortium, NESG; 2.28A {Cytophaga hutchinsonii}
Probab=99.67 E-value=4.4e-14 Score=122.52 Aligned_cols=244 Identities=9% Similarity=-0.006 Sum_probs=156.9
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCC--ChhhHHHHHHHHHhc
Q 010383 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQP--DVITLNTVINGFCKM 292 (512)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~ 292 (512)
....+...|++++|...++.+.+. .+.+...+..+...+...|++++|...+....+....+ ....|..+..++...
T Consensus 9 ~a~~~~~~~~~~~A~~~~~~~l~~-~p~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~lg~~~~~~ 87 (272)
T 3u4t_A 9 YADFLFKNNNYAEAIEVFNKLEAK-KYNSPYIYNRRAVCYYELAKYDLAQKDIETYFSKVNATKAKSADFEYYGKILMKK 87 (272)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHT-TCCCSTTHHHHHHHHHHTTCHHHHHHHHHHHHTTSCTTTCCHHHHHHHHHHHHHT
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHh-CCCcHHHHHHHHHHHHHHhhHHHHHHHHHHHHhccCchhHHHHHHHHHHHHHHHc
Confidence 334444444444444444444432 12223344444444444455555555544444422111 223477788888888
Q ss_pred CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHH
Q 010383 293 GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKE 372 (512)
Q Consensus 293 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 372 (512)
|++++|+..|++..+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..+...+...+++++|..
T Consensus 88 ~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~l~~~~~~~~~~~~A~~ 163 (272)
T 3u4t_A 88 GQDSLAIQQYQAAVDRD--TTRLDMYGQIGSYFYNKGNFPLAIQYMEKQIRPT--TTDPKVFYELGQAYYYNKEYVKADS 163 (272)
T ss_dssp TCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHGGGCCSS--CCCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred ccHHHHHHHHHHHHhcC--cccHHHHHHHHHHHHHccCHHHHHHHHHHHhhcC--CCcHHHHHHHHHHHHHHHHHHHHHH
Confidence 88888888888888765 4566788888888889999999999888866442 3445566666624444569999999
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCC-CCCC------HHhHHHHHHHHHhcCCHHHHHH
Q 010383 373 VFNCMLGIGVVADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPS-NIHD------NYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 373 ~~~~~~~~~~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~-~~~~------~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
.|+++.+.. +.+...+..+..++...|+ +++|...++++.+.. ..|+ ..++..+...|...|++++|.+
T Consensus 164 ~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~ 242 (272)
T 3u4t_A 164 SFVKVLELK-PNIYIGYLWRARANAAQDPDTKQGLAKPYYEKLIEVCAPGGAKYKDELIEANEYIAYYYTINRDKVKADA 242 (272)
T ss_dssp HHHHHHHHS-TTCHHHHHHHHHHHHHHSTTCSSCTTHHHHHHHHHHHGGGGGGGHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHhC-ccchHHHHHHHHHHHHcCcchhhHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 999888854 4456677778888888887 777888888776431 0122 2577788889999999999999
Q ss_pred HHHHHHHCCCCCChhhHHHHHHH
Q 010383 443 FLYELVDSGVTPNIVCYNVVIDG 465 (512)
Q Consensus 443 ~~~~~~~~~~~p~~~~~~~l~~~ 465 (512)
.+++..+.. +-+...+..+...
T Consensus 243 ~~~~al~~~-p~~~~a~~~l~~~ 264 (272)
T 3u4t_A 243 AWKNILALD-PTNKKAIDGLKMK 264 (272)
T ss_dssp HHHHHHHHC-TTCHHHHHHHC--
T ss_pred HHHHHHhcC-ccHHHHHHHhhhh
Confidence 999998864 2244444444333
No 47
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.66 E-value=8e-15 Score=124.83 Aligned_cols=213 Identities=15% Similarity=0.139 Sum_probs=159.9
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010383 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356 (512)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 356 (512)
.....+..+...+...|++++|...|+++.+.. +.+...+..+...+...|++++|...+.+.+... +.+...+..
T Consensus 21 ~~~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~--~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~ 96 (243)
T 2q7f_A 21 MASMTGGQQMGRGSEFGDYEKAAEAFTKAIEEN--KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYG 96 (243)
T ss_dssp ---------------------CCTTHHHHHTTC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHH
T ss_pred hHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHhC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHH
Confidence 355667778888888999999999999988765 5678888888999999999999999998876553 446677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010383 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
+...+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 97 la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~ 174 (243)
T 2q7f_A 97 AGNVYVVKEMYKEAKDMFEKALRAG-MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGM 174 (243)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHT-CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHHHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCC
Confidence 8889999999999999999998864 5577788889999999999999999999988764 5577788999999999999
Q ss_pred HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 010383 437 IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILD 498 (512)
Q Consensus 437 ~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~ 498 (512)
+++|...++++.+.. +.+..++..+...+...|++++|.+.++++.+. .|+ ...+..+.
T Consensus 175 ~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~--~p~~~~~~~~~~ 234 (243)
T 2q7f_A 175 LDEALSQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDI--QPDHMLALHAKK 234 (243)
T ss_dssp CHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHH--CTTCHHHHHHHT
T ss_pred HHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHcc--CcchHHHHHHHH
Confidence 999999999998864 336778899999999999999999999999874 454 44444443
No 48
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.65 E-value=5.7e-12 Score=121.02 Aligned_cols=236 Identities=10% Similarity=-0.011 Sum_probs=173.2
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHH-HHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010383 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEAL-KVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340 (512)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~-~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (512)
.+..+|++.+...+ -....|...+..+...|+.++|. .+|++..... +.+...|...+...-..|+++.|.++|++
T Consensus 327 Rv~~~Ye~aL~~~p-~~~~lW~~ya~~~~~~~~~~~a~r~il~rAi~~~--P~s~~Lwl~~a~~ee~~~~~e~aR~iyek 403 (679)
T 4e6h_A 327 RMTYVYMQAAQHVC-FAPEIWFNMANYQGEKNTDSTVITKYLKLGQQCI--PNSAVLAFSLSEQYELNTKIPEIETTILS 403 (679)
T ss_dssp HHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHSCCTTHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcC-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCCHHHHHHHHHH
Confidence 35567777776643 36778888888888889888896 9999988643 56677777888888889999999999988
Q ss_pred hcccC--------CCCCC------------hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-
Q 010383 341 VMPQR--------GYSPG------------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES- 399 (512)
Q Consensus 341 ~~~~~--------~~~~~------------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 399 (512)
.+... ...|+ ...|...+....+.|+.+.|..+|....+.-.......|...+..-.+.
T Consensus 404 ~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~~~erR~~~l~~AR~vf~~A~~~~~~~~~~lyi~~A~lE~~~~ 483 (679)
T 4e6h_A 404 CIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYMNTMKRIQGLAASRKIFGKCRRLKKLVTPDIYLENAYIEYHIS 483 (679)
T ss_dssp HHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHTGGGSCTHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHhC
Confidence 76431 00131 2357777777778899999999999998751122334444333333344
Q ss_pred CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHHH
Q 010383 400 NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAYQ 477 (512)
Q Consensus 400 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~~ 477 (512)
++.+.|..+|+..++. .+.+...|...+......|+.+.|..+|++.+.....+ ....|...+..-.+.|+.+.+.+
T Consensus 484 ~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~ 562 (679)
T 4e6h_A 484 KDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNEESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRT 562 (679)
T ss_dssp SCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTCHHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHH
T ss_pred CCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCCHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 4589999999999876 35667777888888888999999999999998864322 34678888888888999999999
Q ss_pred HHHHHHHCCCCCChHHHHHHHHhhcc
Q 010383 478 ILREMRKNGLNPDAVTWRILDKLHGN 503 (512)
Q Consensus 478 ~~~~m~~~~~~p~~~~~~~l~~~~~~ 503 (512)
+.+++.+. .|+......+.+-|.-
T Consensus 563 v~~R~~~~--~P~~~~~~~f~~ry~~ 586 (679)
T 4e6h_A 563 LEKRFFEK--FPEVNKLEEFTNKYKV 586 (679)
T ss_dssp HHHHHHHH--STTCCHHHHHHHHTCB
T ss_pred HHHHHHHh--CCCCcHHHHHHHHhcC
Confidence 99999884 4665566666655543
No 49
>2ho1_A Type 4 fimbrial biogenesis protein PILF; type IV pilus biogenesis, TPR, superhelix, protein binding; HET: MSE; 2.00A {Pseudomonas aeruginosa} PDB: 2fi7_A
Probab=99.64 E-value=1.9e-13 Score=116.97 Aligned_cols=195 Identities=13% Similarity=0.011 Sum_probs=146.4
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010383 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|+
T Consensus 44 a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~la~~~~~~g~ 120 (252)
T 2ho1_A 44 GLGYLQRGNTEQAKVPLRKALEID-PSSADAHAALAVVFQTEMEPKLADEEYRKALASD--SRNARVLNNYGGFLYEQKR 120 (252)
T ss_dssp HHHHHHTTCTGGGHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcCChHHHHHHHHHHHhcC-CChHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC--cCcHHHHHHHHHHHHHHhH
Confidence 333444444444444444444432 2256677778888888888888888888887665 4567778888888888888
Q ss_pred HHHHHHHHHhhcccCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010383 331 IQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFW 409 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 409 (512)
+++|.+.+.+.+. .+..| +...+..+...+...|++++|...++++.+.. +.+...+..+...|...|++++|...+
T Consensus 121 ~~~A~~~~~~~~~-~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~ 198 (252)
T 2ho1_A 121 YEEAYQRLLEASQ-DTLYPERSRVFENLGLVSLQMKKPAQAKEYFEKSLRLN-RNQPSVALEMADLLYKEREYVPARQYY 198 (252)
T ss_dssp HHHHHHHHHHHTT-CTTCTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHh-CccCcccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 8888888888765 22233 45667778888888999999999998888754 446778888888999999999999999
Q ss_pred HHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 410 DDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 410 ~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
+++.+.. +.+...+..+...+...|++++|.+.++++.+..
T Consensus 199 ~~~~~~~-~~~~~~~~~~~~~~~~~g~~~~A~~~~~~~~~~~ 239 (252)
T 2ho1_A 199 DLFAQGG-GQNARSLLLGIRLAKVFEDRDTAASYGLQLKRLY 239 (252)
T ss_dssp HHHHTTS-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHHhC-cCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC
Confidence 9988654 5667778888888899999999999999988763
No 50
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.64 E-value=6.1e-14 Score=126.14 Aligned_cols=238 Identities=8% Similarity=0.085 Sum_probs=171.6
Q ss_pred HHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC-HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCH
Q 010383 253 ALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR-IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRI 331 (512)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 331 (512)
.+...|++++|+..++..++..+ -+...|..+..++...|+ +++|+..|++..... +.+...|..+..++...|++
T Consensus 106 ~~~~~g~~~~Al~~~~~al~l~P-~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l~--P~~~~a~~~~g~~~~~~g~~ 182 (382)
T 2h6f_A 106 VLQRDERSERAFKLTRDAIELNA-ANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEEQ--PKNYQVWHHRRVLVEWLRDP 182 (382)
T ss_dssp HHHHTCCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCC
T ss_pred HHHHCCChHHHHHHHHHHHHhCc-cCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHccCH
Confidence 33334444444444444444332 256777788888888886 888888888888766 56778888888888888888
Q ss_pred HHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh-cCCHHHH-----
Q 010383 332 QEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE-SNQLDEA----- 405 (512)
Q Consensus 332 ~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~g~~~~a----- 405 (512)
++|+..|.+++... +-+...|..+..++...|++++|+..++++++.. +.+...|+.+..++.. .|..++|
T Consensus 183 ~eAl~~~~kal~ld--P~~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~-P~~~~a~~~lg~~l~~l~~~~~eA~~~~e 259 (382)
T 2h6f_A 183 SQELEFIADILNQD--AKNYHAWQHRQWVIQEFKLWDNELQYVDQLLKED-VRNNSVWNQRYFVISNTTGYNDRAVLERE 259 (382)
T ss_dssp TTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCSCSHHHHHHH
T ss_pred HHHHHHHHHHHHhC--ccCHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhcCcchHHHHHHH
Confidence 88888888877554 4566778888888888888888888888888864 5567788888888888 5555666
Q ss_pred HHHHHHhhcCCCCCCHHhHHHHHHHHHhcC--CHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC---------CHHH
Q 010383 406 KRFWDDIVWPSNIHDNYVYAAMIKGLCRSG--KIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS---------MKRE 474 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g---------~~~~ 474 (512)
...+++++... +.+...|..+...+...| ++++|.+.+.++ +.. +.+...+..+...|.+.| ..++
T Consensus 260 l~~~~~Al~l~-P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~~-p~~~~al~~La~~~~~~~~~~~~~~~~~~~~ 336 (382)
T 2h6f_A 260 VQYTLEMIKLV-PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QPS-HSSPYLIAFLVDIYEDMLENQCDNKEDILNK 336 (382)
T ss_dssp HHHHHHHHHHS-TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TTT-CCCHHHHHHHHHHHHHHHHTTCSSHHHHHHH
T ss_pred HHHHHHHHHHC-CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-ccC-CCCHHHHHHHHHHHHHHhcccccchHHHHHH
Confidence 47788877654 556778888888888877 688888888887 432 335677888888888764 2588
Q ss_pred HHHHHHHH-HHCCCCCCh-HHHHHHHHhh
Q 010383 475 AYQILREM-RKNGLNPDA-VTWRILDKLH 501 (512)
Q Consensus 475 a~~~~~~m-~~~~~~p~~-~~~~~l~~~~ 501 (512)
|.++++++ .+ +.|.. ..|..+...+
T Consensus 337 A~~~~~~l~~~--~DP~r~~~w~~~~~~l 363 (382)
T 2h6f_A 337 ALELCEILAKE--KDTIRKEYWRYIGRSL 363 (382)
T ss_dssp HHHHHHHHHHT--TCGGGHHHHHHHHHHH
T ss_pred HHHHHHHHHHH--hCchhHHHHHHHHHHH
Confidence 99999988 55 45543 4555555443
No 51
>2vq2_A PILW, putative fimbrial biogenesis and twitching motility protein; secretin, TPR repeat, type IV pilus, bacterail virulence; 1.54A {Neisseria meningitidis}
Probab=99.61 E-value=2e-13 Score=114.60 Aligned_cols=195 Identities=9% Similarity=-0.038 Sum_probs=139.7
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-
Q 010383 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV- 328 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~- 328 (512)
+...+...|++++|...+..+.+.. +.+...+..+...+...|++++|...+++..... +.+...+..+...+...
T Consensus 14 ~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~l~~~~~~~~ 90 (225)
T 2vq2_A 14 LAMEYMRGQDYRQATASIEDALKSD-PKNELAWLVRAEIYQYLKVNDKAQESFRQALSIK--PDSAEINNNYGWFLCGRL 90 (225)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHTTT
T ss_pred HHHHHHHHhhHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHhc
Confidence 3333444444444444444443332 2245677777778888888888888888877654 45677777888888888
Q ss_pred CCHHHHHHHHHhhcccCCCCC-ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHH
Q 010383 329 GRIQEALNLLYQVMPQRGYSP-GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKR 407 (512)
Q Consensus 329 ~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 407 (512)
|++++|...+.+.+. .+..| +...+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|..
T Consensus 91 ~~~~~A~~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~ 168 (225)
T 2vq2_A 91 NRPAESMAYFDKALA-DPTYPTPYIANLNKGICSAKQGQFGLAEAYLKRSLAAQ-PQFPPAFKELARTKMLAGQLGDADY 168 (225)
T ss_dssp CCHHHHHHHHHHHHT-STTCSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHH
T ss_pred CcHHHHHHHHHHHHc-CcCCcchHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCchHHHHHHHHHHHcCCHHHHHH
Confidence 888888888888765 22223 35667777888888888888888888887753 4456778888888888899999998
Q ss_pred HHHHhhcCCCC-CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 408 FWDDIVWPSNI-HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 408 ~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.++++.+.. + .+...+..+...+...|+.++|..+++.+.+.
T Consensus 169 ~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~ 211 (225)
T 2vq2_A 169 YFKKYQSRV-EVLQADDLLLGWKIAKALGNAQAAYEYEAQLQAN 211 (225)
T ss_dssp HHHHHHHHH-CSCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHhC-CCCCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHh
Confidence 888887654 3 56667777777888888888888888888764
No 52
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.61 E-value=4.2e-14 Score=122.87 Aligned_cols=249 Identities=11% Similarity=-0.073 Sum_probs=150.0
Q ss_pred HhccCchhHHHHHHHHHHhCCC---CCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCCh
Q 010383 184 LCKHGGCMRAYQLLEEGIQFGY---LPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNP 260 (512)
Q Consensus 184 ~~~~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~ 260 (512)
....|++++|++.++++.+... +.+..++..+...+...|++++|...|+++....
T Consensus 15 ~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--------------------- 73 (275)
T 1xnf_A 15 LQPTLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--------------------- 73 (275)
T ss_dssp CCCCHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC---------------------
T ss_pred cCccchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC---------------------
Confidence 3456677777777777776421 1134566666677777777777777777665431
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHh
Q 010383 261 TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQ 340 (512)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~ 340 (512)
+.+...+..+..++...|++++|...|++..... +.+...+..+...+...|++++|...+.+
T Consensus 74 ---------------~~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 136 (275)
T 1xnf_A 74 ---------------PDMPEVFNYLGIYLTQAGNFDAAYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLA 136 (275)
T ss_dssp ---------------CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHH
T ss_pred ---------------CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHH
Confidence 1245566666666666777777777777666544 34556666666677777777777777766
Q ss_pred hcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC--
Q 010383 341 VMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-- 418 (512)
Q Consensus 341 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-- 418 (512)
.+.. .|+.......+..+...|++++|...+++..... +++...+ .++..+...++.++|...+++.......
T Consensus 137 a~~~---~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 211 (275)
T 1xnf_A 137 FYQD---DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHFEKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLA 211 (275)
T ss_dssp HHHH---CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHHHHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHH
T ss_pred HHHh---CCCChHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhccccccc
Confidence 5543 2333333333344455677777777776666542 3333333 3556666667777777777777543211
Q ss_pred -CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010383 419 -HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQIL 479 (512)
Q Consensus 419 -~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (512)
.+..++..+...|...|++++|...|++..+.. |+. +.....++...|++++|.+-+
T Consensus 212 ~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~--p~~--~~~~~~~~~~l~~~~~a~~~~ 269 (275)
T 1xnf_A 212 EHLSETNFYLGKYYLSLGDLDSATALFKLAVANN--VHN--FVEHRYALLELSLLGQDQDDL 269 (275)
T ss_dssp HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC--CTT--CHHHHHHHHHHHHHHHC----
T ss_pred ccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhCC--chh--HHHHHHHHHHHHHHHhhHHHH
Confidence 114567777788888888888888888877653 322 233355666677777776654
No 53
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.61 E-value=1.2e-12 Score=113.44 Aligned_cols=219 Identities=10% Similarity=-0.090 Sum_probs=160.5
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHH
Q 010383 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIF 323 (512)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 323 (512)
..+...+...+++++|...|+...+. .+...+..+...|.. .+++++|...|++..+.+ +...+..+..
T Consensus 10 ~~lg~~~~~~~~~~~A~~~~~~a~~~---~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~ 82 (273)
T 1ouv_A 10 VGLGAKSYKEKDFTQAKKYFEKACDL---KENSGCFNLGVLYYQGQGVEKNLKKAASFYAKACDLN----YSNGCHLLGN 82 (273)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHH
T ss_pred HHHHHHHHhCCCHHHHHHHHHHHHHC---CCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHHHCC----CHHHHHHHHH
Confidence 33344444444444444444444442 234556667777777 788888888888877643 5666777777
Q ss_pred HHhh----cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH
Q 010383 324 GLLN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG 395 (512)
Q Consensus 324 ~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 395 (512)
.+.. .+++++|+..|.+.... .+...+..+...|.. .+++++|...|++..+.+ +...+..+...
T Consensus 83 ~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~ 155 (273)
T 1ouv_A 83 LYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIYHDGKVVTRDFKKAVEYFTKACDLN---DGDGCTILGSL 155 (273)
T ss_dssp HHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHH
T ss_pred HHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHHHcCCCcccCHHHHHHHHHHHHhcC---cHHHHHHHHHH
Confidence 7777 88888888888776643 256677777777877 888888888888888765 55667777778
Q ss_pred HHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010383 396 LCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 396 ~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
|.. .+++++|...+++..+.+ +...+..+...|.. .+++++|...+++..+.+ +...+..+...|.
T Consensus 156 ~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~ 229 (273)
T 1ouv_A 156 YDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYHHGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQY 229 (273)
T ss_dssp HHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHH
Confidence 877 888999999998887654 45677778888888 889999999998888865 3567778888888
Q ss_pred h----cCCHHHHHHHHHHHHHCC
Q 010383 468 K----LSMKREAYQILREMRKNG 486 (512)
Q Consensus 468 ~----~g~~~~a~~~~~~m~~~~ 486 (512)
. .+++++|.+.+++..+.|
T Consensus 230 ~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 230 NGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp TTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCcccCHHHHHHHHHHHHHcC
Confidence 8 889999999999988865
No 54
>2q7f_A YRRB protein; TPR, protein binding; 2.49A {Bacillus subtilis} SCOP: k.38.1.1
Probab=99.60 E-value=5.9e-14 Score=119.42 Aligned_cols=198 Identities=11% Similarity=0.034 Sum_probs=133.8
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
+..+...+...|++++|...++.+.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 26 ~~~~a~~~~~~~~~~~A~~~~~~~l~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~la~~~~ 102 (243)
T 2q7f_A 26 GGQQMGRGSEFGDYEKAAEAFTKAIEEN-KEDAIPYINFANLLSSVNELERALAFYDKALELD--SSAATAYYGAGNVYV 102 (243)
T ss_dssp ----------------CCTTHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhhCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC--CcchHHHHHHHHHHH
Confidence 3333444444444444444444444432 2256667777777777888888888888777654 456677777777888
Q ss_pred hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010383 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 406 (512)
..|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++|.
T Consensus 103 ~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~A~ 179 (243)
T 2q7f_A 103 VKEMYKEAKDMFEKALRAG--MENGDLFYMLGTVLVKLEQPKLALPYLQRAVELN-ENDTEARFQFGMCLANEGMLDEAL 179 (243)
T ss_dssp HTTCHHHHHHHHHHHHHHT--CCSHHHHHHHHHHHHHTSCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCCHHHH
T ss_pred HhccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHcCCHHHHH
Confidence 8888888888887765443 3456667777778888888888888888877753 446677788888888888888888
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
..++++.+.. +.+..++..+..++...|++++|.+.++++.+..
T Consensus 180 ~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~ 223 (243)
T 2q7f_A 180 SQFAAVTEQD-PGHADAFYNAGVTYAYKENREKALEMLDKAIDIQ 223 (243)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCTTHHHHHHHHHHHHC
T ss_pred HHHHHHHHhC-cccHHHHHHHHHHHHHccCHHHHHHHHHHHHccC
Confidence 8888887654 4567778888888888888888888888887764
No 55
>2h6f_A Protein farnesyltransferase/geranylgeranyltransferase type I alpha subunit; ftase, farnesyltransferase, farnesyl transferase, prenyltransferase, CAAX, RAS, lipid modification, prenylation; HET: SUC FAR; 1.50A {Homo sapiens} SCOP: a.118.6.1 PDB: 1jcq_A* 1ld7_A* 1mzc_A* 1s63_A* 1sa4_A* 1tn6_A* 1ld8_A* 2h6g_A* 2h6h_A* 2h6i_A* 2iej_A* 3e37_A* 2f0y_A* 3ksl_A* 2zir_A* 2zis_A* 1o5m_A* 3ksq_A* 1o1t_A* 1o1s_A* ...
Probab=99.60 E-value=1.7e-13 Score=123.31 Aligned_cols=215 Identities=9% Similarity=0.099 Sum_probs=99.7
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC-HHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 010383 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD-LEKARKVLQFMLSKKDVDRTRICNIYLRAL 254 (512)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (512)
.|..+...+...|++++|++.++++++.. +-+...|..+..++...|+ +++|...|+++... .+.+...|..+..++
T Consensus 99 a~~~lg~~~~~~g~~~~Al~~~~~al~l~-P~~~~a~~~~g~~l~~~g~d~~eAl~~~~~al~l-~P~~~~a~~~~g~~~ 176 (382)
T 2h6f_A 99 VYDYFRAVLQRDERSERAFKLTRDAIELN-AANYTVWHFRRVLLKSLQKDLHEEMNYITAIIEE-QPKNYQVWHHRRVLV 176 (382)
T ss_dssp HHHHHHHHHHHTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCChHHHHHHHHHHHHhC-ccCHHHHHHHHHHHHHcccCHHHHHHHHHHHHHH-CCCCHHHHHHHHHHH
Confidence 34444455555555555555555555433 2344455555555555553 55555555555532 222233333344444
Q ss_pred HccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhh-cCCHHH
Q 010383 255 CLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLN-VGRIQE 333 (512)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~ 333 (512)
...|++++|+..++.+++..+. +...|..+..++.+.|++++|+..++++.+.. +.+...|+.+..++.. .|..++
T Consensus 177 ~~~g~~~eAl~~~~kal~ldP~-~~~a~~~lg~~~~~~g~~~eAl~~~~~al~l~--P~~~~a~~~lg~~l~~l~~~~~e 253 (382)
T 2h6f_A 177 EWLRDPSQELEFIADILNQDAK-NYHAWQHRQWVIQEFKLWDNELQYVDQLLKED--VRNNSVWNQRYFVISNTTGYNDR 253 (382)
T ss_dssp HHHTCCTTHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCCTTHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCSCSH
T ss_pred HHccCHHHHHHHHHHHHHhCcc-CHHHHHHHHHHHHHcCChHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcCcchH
Confidence 4444444444444444443322 44555555555555555555555555555544 3445555555555555 333244
Q ss_pred H-----HHHHHhhcccCCCCCChhhHHHHHHHHHccC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc
Q 010383 334 A-----LNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES 399 (512)
Q Consensus 334 a-----~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 399 (512)
| +..+.+.+... +-+...|..+...+...| ++++|...+.++ +. .+.+...+..+..+|.+.
T Consensus 254 A~~~~el~~~~~Al~l~--P~~~~a~~~l~~ll~~~g~~~~~~a~~~~~~~-~~-~p~~~~al~~La~~~~~~ 322 (382)
T 2h6f_A 254 AVLEREVQYTLEMIKLV--PHNESAWNYLKGILQDRGLSKYPNLLNQLLDL-QP-SHSSPYLIAFLVDIYEDM 322 (382)
T ss_dssp HHHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHTTTCGGGCHHHHHHHHHH-TT-TCCCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHccCccchHHHHHHHHHh-cc-CCCCHHHHHHHHHHHHHH
Confidence 4 24444433322 223334444444444444 344555544444 21 133334444444444443
No 56
>4e6h_A MRNA 3'-END-processing protein RNA14; HAT domain, heat repeat, CLP1, PCF11, structural protein; 2.30A {Kluyveromyces lactis} PDB: 4e85_A 4eba_A
Probab=99.59 E-value=4.7e-11 Score=114.73 Aligned_cols=443 Identities=8% Similarity=0.025 Sum_probs=274.6
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC---hhhHHHHHH
Q 010383 12 EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD---VERANVLMF 88 (512)
Q Consensus 12 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~ 88 (512)
+.+..|++.+..++ -|..+|..++..+.+.+.++.+..+|+++... .+.....|...+..-.+.++ .+.+..+++
T Consensus 50 d~i~~lE~~l~~np-~d~~~W~~yi~~~~~~~~~~~aR~vyEraL~~-fP~~~~lW~~Yi~~E~~~~~~~~~~~v~~lfe 127 (679)
T 4e6h_A 50 DVIGKLNDMIEEQP-TDIFLYVKLLKHHVSLKQWKQVYETFDKLHDR-FPLMANIWCMRLSLEFDKMEELDAAVIEPVLA 127 (679)
T ss_dssp CHHHHHHHHHHHCT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH-CTTCHHHHHHHHHHHHTC--CCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHCc-CCHHHHHHHHHHHHhcCcHHHHHHHHHHHHHH-CCCCHHHHHHHHHHHHhhCCcchHHHHHHHHH
Confidence 34555666555544 37778888888887778888888888888765 24455667777777777777 777777766
Q ss_pred HHHHHhhhcCCCCcchHhHHHHHHHHHccCCh--------hHHHHHHHhcCC-CCC-CC-cchhHHHHHHHHH-------
Q 010383 89 KLWERMKEEEDLSVNNAAFANLVDSLCREGYV--------NEVFRIAEDMPQ-GKS-VN-EEFACGHMIDSLC------- 150 (512)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------~~a~~~~~~~~~-~~~-~~-~~~~~~~l~~~~~------- 150 (512)
+.+...+ ..|+...|...+....+.++. +.+.++|+.... -|. .+ ....|...+....
T Consensus 128 Ral~~~~----~~~sv~LW~~Yl~f~~~~~~~~~~~~~~r~~vr~~FErAl~~vG~~d~~s~~iW~~Yi~f~~~~~~~~~ 203 (679)
T 4e6h_A 128 RCLSKEL----GNNDLSLWLSYITYVRKKNDIITGGEEARNIVIQAFQVVVDKCAIFEPKSIQFWNEYLHFLEHWKPVNK 203 (679)
T ss_dssp HHTCSSS----CCCCHHHHHHHHHHHHHHSCSTTTHHHHHHHHHHHHHHHHHHTTTTCSSCHHHHHHHHHHHHTCCCCSH
T ss_pred HHHHhcC----CCCCHHHHHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHhCcccccchHHHHHHHHHHHhccccCc
Confidence 6655432 134555666665555443332 334466665332 122 23 2346666655433
Q ss_pred --hcCChhhHHHHHHHHHHcCCCCCcchHH---HHHHHHh----------ccCchhHHHHHHHHHHhC--CC----C---
Q 010383 151 --RSGRNHGASRVVYVMRKRGLTPSLVSYN---SIVHGLC----------KHGGCMRAYQLLEEGIQF--GY----L--- 206 (512)
Q Consensus 151 --~~~~~~~a~~~~~~~~~~g~~p~~~~~~---~l~~~~~----------~~~~~~~a~~~~~~~~~~--~~----~--- 206 (512)
..++.+.+..+|+.........-..+|. .+..... ...+++.|...+.++... ++ +
T Consensus 204 ~eeq~~~~~~R~iy~raL~iP~~~~~~~w~~Y~~fe~~~~~~~a~~~~~e~~~~y~~Ar~~~~e~~~~~~~l~r~~p~~~ 283 (679)
T 4e6h_A 204 FEEQQRVQYIRKLYKTLLCQPMDCLESMWQRYTQWEQDVNQLTARRHIGELSAQYMNARSLYQDWLNITKGLKRNLPITL 283 (679)
T ss_dssp HHHHHHHHHHHHHHHHHTTSCCSSHHHHHHHHHHHHHHHCTTTHHHHHHHHHHHHHHHHHHHHHHHHHTTTCCCCCCSSS
T ss_pred HHHHhHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHhcCcchHHHHHHHhhHHHHHHHHHHHHHHHHHHhHhhcccccc
Confidence 2334667777777776431111112221 1111110 011233344444443211 11 1
Q ss_pred --------C--c------hhhHHHHHHHHhccC-------CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhH
Q 010383 207 --------P--S------EHTYKVLVEGLCGES-------DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTEL 263 (512)
Q Consensus 207 --------~--~------~~~~~~l~~~~~~~g-------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 263 (512)
| + ...|...+..--..+ ..+.+..+|++.... .+....+|..++..+...|+.++|
T Consensus 284 ~~~~~~~~p~~~~~~~~ql~lW~~yi~fEk~~~~~l~~~~~~~Rv~~~Ye~aL~~-~p~~~~lW~~ya~~~~~~~~~~~a 362 (679)
T 4e6h_A 284 NQATESNLPKPNEYDVQQLLIWLEWIRWESDNKLELSDDLHKARMTYVYMQAAQH-VCFAPEIWFNMANYQGEKNTDSTV 362 (679)
T ss_dssp TTCCTTTSCCTTCCCHHHHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHHHHHHHH-TTTCHHHHHHHHHHHHHHSCCTTH
T ss_pred ccchhccCCCCchhHHHHHHHHHHHHHHHHhCCccccchhhHHHHHHHHHHHHHH-cCCCHHHHHHHHHHHHhcCcHHHH
Confidence 1 0 134444444333322 123456678887753 555777888888888889999999
Q ss_pred H-HHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--------CCC------------cHHHHHHHH
Q 010383 264 L-NVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF--------CAP------------DAVTFTTII 322 (512)
Q Consensus 264 ~-~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--------~~~------------~~~~~~~l~ 322 (512)
. .+|....... +.+...|...+....+.|+++.|..+|+.+..... ..| ....|...+
T Consensus 363 ~r~il~rAi~~~-P~s~~Lwl~~a~~ee~~~~~e~aR~iyek~l~~l~~~~~~~~~~~p~~~~~~~~~~~~~~~vWi~y~ 441 (679)
T 4e6h_A 363 ITKYLKLGQQCI-PNSAVLAFSLSEQYELNTKIPEIETTILSCIDRIHLDLAALMEDDPTNESAINQLKSKLTYVYCVYM 441 (679)
T ss_dssp HHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHhhhhhhccCcchhhhhhhccchHHHHHHHH
Confidence 7 9999988753 34666677788888899999999999999875310 012 234677778
Q ss_pred HHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc-CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010383 323 FGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401 (512)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (512)
....+.|..+.|..+|.+.++..+ .+....|...+..-.+. ++.+.|..+|+...+. .+.+...+...+......|+
T Consensus 442 ~~erR~~~l~~AR~vf~~A~~~~~-~~~~~lyi~~A~lE~~~~~d~e~Ar~ife~~Lk~-~p~~~~~w~~y~~fe~~~~~ 519 (679)
T 4e6h_A 442 NTMKRIQGLAASRKIFGKCRRLKK-LVTPDIYLENAYIEYHISKDTKTACKVLELGLKY-FATDGEYINKYLDFLIYVNE 519 (679)
T ss_dssp HHHHHHHCHHHHHHHHHHHHHTGG-GSCTHHHHHHHHHHHTTTSCCHHHHHHHHHHHHH-HTTCHHHHHHHHHHHHHHTC
T ss_pred HHHHHcCCHHHHHHHHHHHHHhcC-CCChHHHHHHHHHHHHhCCCHHHHHHHHHHHHHH-CCCchHHHHHHHHHHHhCCC
Confidence 888888999999999999775411 11233343333333344 4589999999999886 45566677788888888999
Q ss_pred HHHHHHHHHHhhcCCCC--CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 402 LDEAKRFWDDIVWPSNI--HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~--~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
.+.|..+|++.+..... .....|...+..-.+.|+.+.+.++.+++.+.- |+......++.-|
T Consensus 520 ~~~AR~lferal~~~~~~~~~~~lw~~~~~fE~~~G~~~~~~~v~~R~~~~~--P~~~~~~~f~~ry 584 (679)
T 4e6h_A 520 ESQVKSLFESSIDKISDSHLLKMIFQKVIFFESKVGSLNSVRTLEKRFFEKF--PEVNKLEEFTNKY 584 (679)
T ss_dssp HHHHHHHHHHHTTTSSSTTHHHHHHHHHHHHHHHTCCSHHHHHHHHHHHHHS--TTCCHHHHHHHHT
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCcHHHHHHHHh
Confidence 99999999999876432 244578888888888999999999999999863 4433443443333
No 57
>1xnf_A Lipoprotein NLPI; TPR, tetratricopeptide, structural genomi unknown function; 1.98A {Escherichia coli} SCOP: a.118.8.1
Probab=99.59 E-value=1.9e-13 Score=118.70 Aligned_cols=224 Identities=10% Similarity=-0.047 Sum_probs=177.3
Q ss_pred cCChhhHHHHHHHHHhcCC---CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHH
Q 010383 257 IKNPTELLNVLVFMLQTQC---QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQE 333 (512)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 333 (512)
.+++++|+..++.+.+... +.+...+..+...+...|++++|...|+++.... +.+...+..+...+...|++++
T Consensus 18 ~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~la~~~~~~~~~~~ 95 (275)
T 1xnf_A 18 TLQQEVILARMEQILASRALTDDERAQLLYERGVLYDSLGLRALARNDFSQALAIR--PDMPEVFNYLGIYLTQAGNFDA 95 (275)
T ss_dssp CHHHHHHHHHHHHHHTSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHTTCHHH
T ss_pred cchHHHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHcccHHHHHHHHHHHHHcC--CCcHHHHHHHHHHHHHccCHHH
Confidence 4556666666666665432 1246678889999999999999999999998875 5678899999999999999999
Q ss_pred HHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010383 334 ALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 334 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
|...+.+.+... +.+...+..+...+...|++++|...++++.+. .|+.......+..+...|++++|...+++..
T Consensus 96 A~~~~~~al~~~--~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 171 (275)
T 1xnf_A 96 AYEAFDSVLELD--PTYNYAHLNRGIALYYGGRDKLAQDDLLAFYQD--DPNDPFRSLWLYLAEQKLDEKQAKEVLKQHF 171 (275)
T ss_dssp HHHHHHHHHHHC--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CTTCHHHHHHHHHHHHHHCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--ccccHHHHHHHHHHHHhccHHHHHHHHHHHHHh--CCCChHHHHHHHHHHHhcCHHHHHHHHHHHH
Confidence 999999987654 445778899999999999999999999999985 3454444555556677899999999998887
Q ss_pred cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC---ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010383 414 WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP---NIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD 490 (512)
Q Consensus 414 ~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p---~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~ 490 (512)
... +++...+ .++..+...++.++|...+.+..+..... +...+..+...+.+.|++++|...++++.+. .|+
T Consensus 172 ~~~-~~~~~~~-~~~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~--~p~ 247 (275)
T 1xnf_A 172 EKS-DKEQWGW-NIVEFYLGNISEQTLMERLKADATDNTSLAEHLSETNFYLGKYYLSLGDLDSATALFKLAVAN--NVH 247 (275)
T ss_dssp HHS-CCCSTHH-HHHHHHTTSSCHHHHHHHHHHHCCSHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT--CCT
T ss_pred hcC-CcchHHH-HHHHHHHHhcCHHHHHHHHHHHhcccccccccccHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--Cch
Confidence 653 4444444 47777888889999999999887653211 2577889999999999999999999999974 453
No 58
>1ouv_A Conserved hypothetical secreted protein; TPR repeat, HCP repeat, cysteine rich protein, loop-helix-TU repeat protein, hydrolase; 2.00A {Helicobacter pylori} SCOP: a.118.18.1
Probab=99.58 E-value=3.2e-12 Score=110.70 Aligned_cols=223 Identities=9% Similarity=-0.053 Sum_probs=141.7
Q ss_pred cchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc----cCCHHHHHHHHHHHHhCCCCCCcccHHH
Q 010383 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG----ESDLEKARKVLQFMLSKKDVDRTRICNI 249 (512)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~ 249 (512)
..++..+...+...|++++|.+.|++..+ +.+...+..+...+.. .+++++|...|++..
T Consensus 6 ~~a~~~lg~~~~~~~~~~~A~~~~~~a~~---~~~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~------------- 69 (273)
T 1ouv_A 6 PKELVGLGAKSYKEKDFTQAKKYFEKACD---LKENSGCFNLGVLYYQGQGVEKNLKKAASFYAKAC------------- 69 (273)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHH-------------
T ss_pred hHHHHHHHHHHHhCCCHHHHHHHHHHHHH---CCCHHHHHHHHHHHHcCCCcCCCHHHHHHHHHHHH-------------
Confidence 34445555555555555555555555554 2233344444455555 555555555555544
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH
Q 010383 250 YLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCK----MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL 325 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 325 (512)
+.+ +...+..+...|.. .+++++|+..|++..+. .+...+..+...|
T Consensus 70 ----------------------~~~---~~~a~~~lg~~~~~g~~~~~~~~~A~~~~~~a~~~----~~~~a~~~lg~~~ 120 (273)
T 1ouv_A 70 ----------------------DLN---YSNGCHLLGNLYYSGQGVSQNTNKALQYYSKACDL----KYAEGCASLGGIY 120 (273)
T ss_dssp ----------------------HTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHT----TCHHHHHHHHHHH
T ss_pred ----------------------HCC---CHHHHHHHHHHHhCCCCcccCHHHHHHHHHHHHHc----CCccHHHHHHHHH
Confidence 433 45556666666666 67777777777777654 2556666666667
Q ss_pred hh----cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010383 326 LN----VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397 (512)
Q Consensus 326 ~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (512)
.. .+++++|+..|.+.+... +...+..+...|.. .+++++|...|++..+.+ +...+..+...|.
T Consensus 121 ~~~~~~~~~~~~A~~~~~~a~~~~----~~~a~~~lg~~~~~~~~~~~~~~~A~~~~~~a~~~~---~~~a~~~lg~~~~ 193 (273)
T 1ouv_A 121 HDGKVVTRDFKKAVEYFTKACDLN----DGDGCTILGSLYDAGRGTPKDLKKALASYDKACDLK---DSPGCFNAGNMYH 193 (273)
T ss_dssp HHCSSSCCCHHHHHHHHHHHHHTT----CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHH
T ss_pred HcCCCcccCHHHHHHHHHHHHhcC----cHHHHHHHHHHHHcCCCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHHHH
Confidence 66 777777777777655322 44555666666666 777788888877777653 4566677777777
Q ss_pred h----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 010383 398 E----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 398 ~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~ 451 (512)
. .+++++|...+++..+.+ +...+..+...|.. .+++++|.+.|++..+.+
T Consensus 194 ~g~~~~~~~~~A~~~~~~a~~~~---~~~a~~~l~~~~~~g~~~~~~~~~A~~~~~~a~~~~ 252 (273)
T 1ouv_A 194 HGEGATKNFKEALARYSKACELE---NGGGCFNLGAMQYNGEGVTRNEKQAIENFKKGCKLG 252 (273)
T ss_dssp HTCSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHTTSSSSCCSTTHHHHHHHHHHHT
T ss_pred cCCCCCccHHHHHHHHHHHHhCC---CHHHHHHHHHHHHcCCCcccCHHHHHHHHHHHHHcC
Confidence 7 788888888888777654 25566777777777 778888888888777764
No 59
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.56 E-value=4.7e-12 Score=111.58 Aligned_cols=217 Identities=7% Similarity=-0.017 Sum_probs=152.0
Q ss_pred hhHHHHHHHHHhcCCCCChhhHHHHHHHHH-------hcCCH-------HHHHHHHHHHhhC-CCCCCcHHHHHHHHHHH
Q 010383 261 TELLNVLVFMLQTQCQPDVITLNTVINGFC-------KMGRI-------EEALKVLNDMVAG-KFCAPDAVTFTTIIFGL 325 (512)
Q Consensus 261 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------~~~~~-------~~a~~~~~~~~~~-~~~~~~~~~~~~l~~~~ 325 (512)
++|...|++.+... +.++..|..++..+. +.|++ ++|..+|++.... . +.+...|..++..+
T Consensus 33 ~~a~~~~~~al~~~-p~~~~~w~~~~~~~~~~~~~l~~~g~~~~~~~~~~~A~~~~~rAl~~~~--p~~~~~~~~~~~~~ 109 (308)
T 2ond_A 33 KRVMFAYEQCLLVL-GHHPDIWYEAAQYLEQSSKLLAEKGDMNNAKLFSDEAANIYERAISTLL--KKNMLLYFAYADYE 109 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHHHHHHTTTT--TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHc-CCCHHHHHHHHHHHHHhchhhhhccchhhcccchHHHHHHHHHHHHHhC--cccHHHHHHHHHHH
Confidence 45555666665543 225566666666554 34664 7888888888763 3 45666788888888
Q ss_pred hhcCCHHHHHHHHHhhcccCCCCCC-hh-hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH-hcCCH
Q 010383 326 LNVGRIQEALNLLYQVMPQRGYSPG-IV-TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC-ESNQL 402 (512)
Q Consensus 326 ~~~~~~~~a~~~~~~~~~~~~~~~~-~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-~~g~~ 402 (512)
...|++++|..+|++.+.. .|+ .. .|..++..+.+.|++++|..+|++..+.. +++...|........ ..|++
T Consensus 110 ~~~~~~~~A~~~~~~al~~---~p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~a~~~~~~~~~~ 185 (308)
T 2ond_A 110 ESRMKYEKVHSIYNRLLAI---EDIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA-RTRHHVYVTAALMEYYCSKDK 185 (308)
T ss_dssp HHTTCHHHHHHHHHHHHTS---SSSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST-TCCTHHHHHHHHHHHHTSCCH
T ss_pred HhcCCHHHHHHHHHHHHhc---cccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHcCCH
Confidence 8888888888888887643 343 33 67777777888888888888888888754 344445544433322 36888
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC-CCC--ChhhHHHHHHHHHhcCCHHHHHHHH
Q 010383 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG-VTP--NIVCYNVVIDGACKLSMKREAYQIL 479 (512)
Q Consensus 403 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~p--~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (512)
++|..+|++.++.. +.+...|..++..+.+.|++++|..+|++.++.. +.| ....|..++....+.|+.++|..++
T Consensus 186 ~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~~~g~~~~a~~~~ 264 (308)
T 2ond_A 186 SVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFESNIGDLASILKVE 264 (308)
T ss_dssp HHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHHHHSCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHH
Confidence 88888888887653 4567778888888888888888888888888753 344 3557777888888888888888888
Q ss_pred HHHHHC
Q 010383 480 REMRKN 485 (512)
Q Consensus 480 ~~m~~~ 485 (512)
+++.+.
T Consensus 265 ~~a~~~ 270 (308)
T 2ond_A 265 KRRFTA 270 (308)
T ss_dssp HHHHHH
T ss_pred HHHHHH
Confidence 888763
No 60
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.55 E-value=8.5e-14 Score=128.45 Aligned_cols=209 Identities=15% Similarity=0.092 Sum_probs=131.2
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCc
Q 010383 27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSV 102 (512)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 102 (512)
+....+......+...|++++|...|++..+.+ +.+ ..++..+...+...|++++|...+.+.+.......+...
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~ 85 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLG 85 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHhccccHH
Confidence 345566777777888888888888888887753 122 245667777888888888888888777766554433333
Q ss_pred chHhHHHHHHHHHccCChhHHHHHHHhcCCCCC-----CCcchhHHHHHHHHHhcCC--------------------hhh
Q 010383 103 NNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGR--------------------NHG 157 (512)
Q Consensus 103 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~ 157 (512)
...++..+...+...|++++|...+++...... .....++..+...+...|+ +++
T Consensus 86 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~ 165 (406)
T 3sf4_A 86 EAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDVGEFPEEVRDALQA 165 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHTCC-------CCCCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHHHHHHHcCCcccccccchhhhhhhhHHHHHHH
Confidence 355667777777788888888777766543211 0112356666667777777 777
Q ss_pred HHHHHHHHHHc----CCCC-CcchHHHHHHHHhccCchhHHHHHHHHHHhCCC-CC----chhhHHHHHHHHhccCCHHH
Q 010383 158 ASRVVYVMRKR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGY-LP----SEHTYKVLVEGLCGESDLEK 227 (512)
Q Consensus 158 a~~~~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~g~~~~ 227 (512)
|...++..... +..| ...++..+...+...|++++|...+++..+... .+ ...++..+...+...|++++
T Consensus 166 A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~ 245 (406)
T 3sf4_A 166 AVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFET 245 (406)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHcCChHH
Confidence 77766654431 1111 123566666777777777777777776654310 01 12356666667777777777
Q ss_pred HHHHHHHHH
Q 010383 228 ARKVLQFML 236 (512)
Q Consensus 228 a~~~~~~~~ 236 (512)
|...+++..
T Consensus 246 A~~~~~~al 254 (406)
T 3sf4_A 246 ASEYYKKTL 254 (406)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 777776654
No 61
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.55 E-value=1.1e-12 Score=106.22 Aligned_cols=171 Identities=10% Similarity=0.036 Sum_probs=100.7
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010383 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393 (512)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 393 (512)
+...|..+...+...|++++|++.|++.++.. +-+...+..+..++.+.|++++|...+....... +.+...+..+.
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~~ 80 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD-TTSAEAYYILG 80 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC-chhHHHHHHHH
Confidence 34455555555555566666666555554433 3344455555555666666666666666655542 33444555555
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHH
Q 010383 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKR 473 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~ 473 (512)
..+...++++.|...+.+..... +.+...+..+..++...|++++|++.|++..+.. +.+...|..+..++.+.|+++
T Consensus 81 ~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~~ 158 (184)
T 3vtx_A 81 SANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLRD 158 (184)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCHH
Confidence 66666666666666666665443 4455566666666666677777777666666653 224556666666677777777
Q ss_pred HHHHHHHHHHHCCCCCCh
Q 010383 474 EAYQILREMRKNGLNPDA 491 (512)
Q Consensus 474 ~a~~~~~~m~~~~~~p~~ 491 (512)
+|.+.+++..+ +.|+.
T Consensus 159 ~A~~~~~~al~--~~p~~ 174 (184)
T 3vtx_A 159 EAVKYFKKALE--KEEKK 174 (184)
T ss_dssp HHHHHHHHHHH--TTHHH
T ss_pred HHHHHHHHHHh--CCccC
Confidence 77777776665 34543
No 62
>3sf4_A G-protein-signaling modulator 2; tetratricopeptide repeat, TPR, cell polarity, asymmetric CEL division, mitotic spindle orientation; 2.60A {Homo sapiens}
Probab=99.54 E-value=1.1e-13 Score=127.61 Aligned_cols=304 Identities=13% Similarity=0.089 Sum_probs=193.4
Q ss_pred CCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccH
Q 010383 172 PSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRIC 247 (512)
Q Consensus 172 p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 247 (512)
+....+......+...|++++|...|+++.+.. +.+ ...+..+...+...|+++.|...+++......
T Consensus 7 ~~~~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~------- 78 (406)
T 3sf4_A 7 ASCLELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLAR------- 78 (406)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHHHhccHHHHHHHHHHHHhcC-cccHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH-------
Confidence 344556667777778888888888888877753 222 24666777777788888888887777643100
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC----CCCcHHHHHHHH
Q 010383 248 NIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF----CAPDAVTFTTII 322 (512)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~----~~~~~~~~~~l~ 322 (512)
..+. +.....+..+...+...|++++|...+++...... ......++..+.
T Consensus 79 ------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 134 (406)
T 3sf4_A 79 ------------------------TIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLG 134 (406)
T ss_dssp ------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred ------------------------hccccHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcccccchHHHHHHHH
Confidence 0000 01233455666667777777777777666553210 011134566667
Q ss_pred HHHhhcCC--------------------HHHHHHHHHhhcccC---CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHH
Q 010383 323 FGLLNVGR--------------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCML 378 (512)
Q Consensus 323 ~~~~~~~~--------------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 378 (512)
..+...|+ +++|...+.+.+... +. +....++..+...+...|++++|...+++..
T Consensus 135 ~~~~~~g~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 214 (406)
T 3sf4_A 135 NVYHAKGKSFGCPGPQDVGEFPEEVRDALQAAVDFYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRL 214 (406)
T ss_dssp HHHHHHHHTCC-------CCCCHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTBHHHHHHHHHHHH
T ss_pred HHHHHcCCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHccCHHHHHHHHHHHH
Confidence 77777777 777777776654321 11 1123456677778888888888888888876
Q ss_pred hCCC-CCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC----CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 379 GIGV-VAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 379 ~~~~-~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
+... .++ ..++..+...|...|++++|...+++..... ..+ ...++..+...|...|++++|...+++..
T Consensus 215 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~ 294 (406)
T 3sf4_A 215 LIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHL 294 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhCcCchHHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 5210 111 2367778888888999999998888876321 111 14567788888899999999999988876
Q ss_pred HC----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hHHHHHHHHhhccCCCC
Q 010383 449 DS----GVTP-NIVCYNVVIDGACKLSMKREAYQILREMRKN----GLNPD-AVTWRILDKLHGNRGND 507 (512)
Q Consensus 449 ~~----~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~----~~~p~-~~~~~~l~~~~~~~g~~ 507 (512)
+. +-.+ ...++..+...+...|++++|.+.+++..+. +-.+. ..++..+..++...|+.
T Consensus 295 ~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 363 (406)
T 3sf4_A 295 AIAQELNDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLEISREVGDKSGELTARLNLSDLQMVLGLS 363 (406)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHhcCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCcchhHHHHHHHHHHHHhhHh
Confidence 53 1111 1456778888889999999999998887532 22222 34556666676666544
No 63
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.54 E-value=6.9e-14 Score=129.32 Aligned_cols=278 Identities=12% Similarity=0.061 Sum_probs=183.0
Q ss_pred chHHHHHHHHhccCchhHHHHHHHHHHhCCCCCch----hhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 010383 175 VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE----HTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250 (512)
Q Consensus 175 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 250 (512)
..+..+...+...|++++|...|+++.+.. +.+. ..+..+...+...|++++|...+++......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~---------- 117 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAK---------- 117 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH----------
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHH----------
Confidence 344556666777788888888888777653 2222 3566677777777777777777776653200
Q ss_pred HHHHHccCChhhHHHHHHHHHhcC-CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC----CCCCcHHHHHHHHHHH
Q 010383 251 LRALCLIKNPTELLNVLVFMLQTQ-CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK----FCAPDAVTFTTIIFGL 325 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~----~~~~~~~~~~~l~~~~ 325 (512)
..+ .+.....+..+...|...|++++|...+++..... ..+....++..+...+
T Consensus 118 ---------------------~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~ 176 (411)
T 4a1s_A 118 ---------------------SMNDRLGEAKSSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVY 176 (411)
T ss_dssp ---------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH
T ss_pred ---------------------HccCchHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHH
Confidence 000 01123455666667777777777777776655421 0022344666677777
Q ss_pred hhcCC-----------------HHHHHHHHHhhcccC---CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-
Q 010383 326 LNVGR-----------------IQEALNLLYQVMPQR---GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV- 383 (512)
Q Consensus 326 ~~~~~-----------------~~~a~~~~~~~~~~~---~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~- 383 (512)
...|+ +++|...+.+.+... +. ......+..+...+...|++++|...+++..+....
T Consensus 177 ~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 256 (411)
T 4a1s_A 177 HAKGKHLGQRNPGKFGDDVKEALTRAVEFYQENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREF 256 (411)
T ss_dssp HHHHHHHHHHSTTCCCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred HHcCcccccccchhhhhhhhHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhc
Confidence 77777 777777776654321 11 112346677778888889999998888887663110
Q ss_pred CC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC-----CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC---
Q 010383 384 AD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSN-----IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG--- 451 (512)
Q Consensus 384 ~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~--- 451 (512)
++ ..++..+..+|...|++++|...+++...... .....++..+...+...|++++|...+++..+..
T Consensus 257 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 336 (411)
T 4a1s_A 257 GDRAAERRANSNLGNSHIFLGQFEDAAEHYKRTLALAVELGEREVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQEL 336 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHH
T ss_pred CCcHHHHHHHHHHHHHHHHCcCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHC
Confidence 11 22677888889999999999999888764211 0124577888889999999999999998877531
Q ss_pred -C-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 452 -V-TPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 452 -~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
. .....++..+...+...|++++|.+.+++..+
T Consensus 337 ~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 371 (411)
T 4a1s_A 337 GDRIGEARACWSLGNAHSAIGGHERALKYAEQHLQ 371 (411)
T ss_dssp TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHH
Confidence 1 11234677888899999999999999998876
No 64
>3vtx_A MAMA; tetratricopeptide repeats (TPR) containing protein, peptide protein, protein binding; 1.75A {Candidatus magnetobacterium bavaricum} PDB: 3vty_A
Probab=99.52 E-value=2e-12 Score=104.59 Aligned_cols=167 Identities=10% Similarity=0.107 Sum_probs=142.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 357 (512)
++..|..+...|.+.|++++|+..|++..+.. +.+...+..+..++...|++++|...+.+..... +.+...+..+
T Consensus 4 ~~~iy~~lG~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~ 79 (184)
T 3vtx_A 4 TTTIYMDIGDKKRTKGDFDGAIRAYKKVLKAD--PNNVETLLKLGKTYMDIGLPNDAIESLKKFVVLD--TTSAEAYYIL 79 (184)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--CCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--chhHHHHHHH
Confidence 56788889999999999999999999988776 6678888899999999999999999988866544 4455667777
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010383 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (512)
...+...++++.+...+.+..+.. +.+...+..+..+|...|++++|.+.++++++.. +.+..++..+..+|.+.|++
T Consensus 80 ~~~~~~~~~~~~a~~~~~~a~~~~-~~~~~~~~~lg~~~~~~g~~~~A~~~~~~~l~~~-p~~~~~~~~lg~~~~~~g~~ 157 (184)
T 3vtx_A 80 GSANFMIDEKQAAIDALQRAIALN-TVYADAYYKLGLVYDSMGEHDKAIEAYEKTISIK-PGFIRAYQSIGLAYEGKGLR 157 (184)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHHHhCCchhHHHHHHHHHHhc-chhhhHHHHHHHHHHHCCCH
Confidence 788888999999999999988764 5567788889999999999999999999998765 56778899999999999999
Q ss_pred HHHHHHHHHHHHC
Q 010383 438 HEAVHFLYELVDS 450 (512)
Q Consensus 438 ~~a~~~~~~~~~~ 450 (512)
++|.+.|++.++.
T Consensus 158 ~~A~~~~~~al~~ 170 (184)
T 3vtx_A 158 DEAVKYFKKALEK 170 (184)
T ss_dssp HHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhC
Confidence 9999999998875
No 65
>4a1s_A PINS, partner of inscuteable; cell cycle, LGN, mitotic spindle orientation, asymmetric CEL divisions; 2.10A {Drosophila melanogaster}
Probab=99.52 E-value=1.4e-13 Score=127.17 Aligned_cols=282 Identities=14% Similarity=0.029 Sum_probs=173.2
Q ss_pred HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010383 30 VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 105 (512)
Q Consensus 30 ~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (512)
..+..+...+...|++++|+..|+++.+.+ +.+. ..|..+...+...|++++|...+.+.++......+......
T Consensus 49 ~~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 127 (411)
T 4a1s_A 49 LELALEGERLCNAGDCRAGVAFFQAAIQAG-TEDLRTLSAIYSQLGNAYFYLGDYNKAMQYHKHDLTLAKSMNDRLGEAK 127 (411)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHHHHHHhc-ccChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccCchHHHH
Confidence 345667778899999999999999998863 2233 46778888999999999999999998877655544444556
Q ss_pred hHHHHHHHHHccCChhHHHHHHHhcCCCC-----CCCcchhHHHHHHHHHhcCC-----------------hhhHHHHHH
Q 010383 106 AFANLVDSLCREGYVNEVFRIAEDMPQGK-----SVNEEFACGHMIDSLCRSGR-----------------NHGASRVVY 163 (512)
Q Consensus 106 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~-----------------~~~a~~~~~ 163 (512)
.+..+...+...|++++|...+++..... ......++..+...+...|+ +++|...++
T Consensus 128 ~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~~~~~~~~~~~a~~~~~~A~~~~~ 207 (411)
T 4a1s_A 128 SSGNLGNTLKVMGRFDEAAICCERHLTLARQLGDRLSEGRALYNLGNVYHAKGKHLGQRNPGKFGDDVKEALTRAVEFYQ 207 (411)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHHHHHHSTTCCCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHhhchHHHHHHHHHHHHHHHHcCcccccccchhhhhhhhHHHHHHHHHHH
Confidence 77888888888999999888887754321 11223456667777777777 777777766
Q ss_pred HHHHc----CCCC-CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC-Cc----hhhHHHHHHHHhccCCHHHHHHHHH
Q 010383 164 VMRKR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-PS----EHTYKVLVEGLCGESDLEKARKVLQ 233 (512)
Q Consensus 164 ~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~g~~~~a~~~~~ 233 (512)
+..+. +..| ...++..+...+...|++++|.+.+++..+.... ++ ..++..+...+...|++++|...++
T Consensus 208 ~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~ 287 (411)
T 4a1s_A 208 ENLKLMRDLGDRGAQGRACGNLGNTYYLLGDFQAAIEHHQERLRIAREFGDRAAERRANSNLGNSHIFLGQFEDAAEHYK 287 (411)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHTTTCHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHhcCCcHHHHHHHHHHHHHHHHCcCHHHHHHHHH
Confidence 65431 1111 1235666666777777777777777766543100 01 1255666666666777777766666
Q ss_pred HHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC---
Q 010383 234 FMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF--- 310 (512)
Q Consensus 234 ~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--- 310 (512)
+.......... .......+..+...+...|++++|...+++......
T Consensus 288 ~al~~~~~~~~------------------------------~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~ 337 (411)
T 4a1s_A 288 RTLALAVELGE------------------------------REVEAQSCYSLGNTYTLLHEFNTAIEYHNRHLAIAQELG 337 (411)
T ss_dssp HHHHHHHHTTC------------------------------HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHT
T ss_pred HHHHHHHHcCC------------------------------HHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCC
Confidence 65432100000 000133445555556666666666666655543210
Q ss_pred -CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010383 311 -CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342 (512)
Q Consensus 311 -~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 342 (512)
......++..+...+...|++++|...+.+.+
T Consensus 338 ~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al 370 (411)
T 4a1s_A 338 DRIGEARACWSLGNAHSAIGGHERALKYAEQHL 370 (411)
T ss_dssp CHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred ChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 01123345555666666666666666665544
No 66
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.52 E-value=1.3e-13 Score=123.53 Aligned_cols=277 Identities=12% Similarity=0.081 Sum_probs=185.6
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhCCCCCc----hhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHH
Q 010383 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS----EHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYL 251 (512)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 251 (512)
.+......+...|++++|...++++.+.. +.+ ...+..+...+...|++++|.+.+++.....
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~------------ 73 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLA------------ 73 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH------------
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHh------------
Confidence 44455666677788888888887777653 222 2456667777777777777777777654310
Q ss_pred HHHHccCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC----cHHHHHHHHHHHh
Q 010383 252 RALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP----DAVTFTTIIFGLL 326 (512)
Q Consensus 252 ~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~~l~~~~~ 326 (512)
...+. +.....+..+...+...|++++|...+++..+.....+ ...++..+...+.
T Consensus 74 -------------------~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~ 134 (338)
T 3ro2_A 74 -------------------RTIGDQLGEAKASGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYH 134 (338)
T ss_dssp -------------------HHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred -------------------hcccccHHHHHHHHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHH
Confidence 00000 11234566677777777888888877777654211011 1336667777777
Q ss_pred hcCC--------------------HHHHHHHHHhhcccCC----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC
Q 010383 327 NVGR--------------------IQEALNLLYQVMPQRG----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV 382 (512)
Q Consensus 327 ~~~~--------------------~~~a~~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~ 382 (512)
..|+ +++|...+.+.+.... .+.....+..+...+...|++++|...+++..+...
T Consensus 135 ~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~ 214 (338)
T 3ro2_A 135 AKGKSFGCPGPQDTGEFPEDVRNALQAAVDLYEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAK 214 (338)
T ss_dssp HHHHTSSSSSCC----CCHHHHHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHH
T ss_pred HcCcccccchhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHH
Confidence 7777 7888777766543211 111234677778888889999999999988865310
Q ss_pred -CC----ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC----CCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC--
Q 010383 383 -VA----DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-- 450 (512)
Q Consensus 383 -~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-- 450 (512)
.+ ...++..+...+...|++++|...+++..... ..+ ...++..+...+...|++++|...+++..+.
T Consensus 215 ~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 215 EFGDKAAERRAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred hcCChHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 01 12367888889999999999999999876421 111 1457788889999999999999999988753
Q ss_pred --CC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 451 --GV-TPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 451 --~~-~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+- .....++..+...+.+.|++++|.+.+++..+
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 11 11244677889999999999999999999876
No 67
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=1.6e-12 Score=118.65 Aligned_cols=229 Identities=7% Similarity=-0.059 Sum_probs=152.9
Q ss_pred HHHccCChhhHHHHHHHHHhc----CCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCcHHHHHHHH
Q 010383 253 ALCLIKNPTELLNVLVFMLQT----QCQP-DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-----APDAVTFTTII 322 (512)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~ 322 (512)
.+...|++++|...+....+. +..+ ...++..+...|...|+++.|...+++..+.... +....++..+.
T Consensus 112 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 191 (383)
T 3ulq_A 112 YELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSLFA 191 (383)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHHHH
Confidence 334444555555444444432 1011 2346677777888888888888888776642110 12245677778
Q ss_pred HHHhhcCCHHHHHHHHHhhcccCCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CC-CCChHhHHHHH
Q 010383 323 FGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GV-VADSTTYAIVI 393 (512)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~l~ 393 (512)
..+...|++++|...+.+.+....-.++ ..++..+...|...|++++|...+++..+. +. +....++..+.
T Consensus 192 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~ 271 (383)
T 3ulq_A 192 TNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFLIT 271 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHHHH
T ss_pred HHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHHHH
Confidence 8888888888888888776643211122 246777888888899999999998888762 22 33455788888
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCC----CCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChhhHHHHHHH
Q 010383 394 DGLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTP-NIVCYNVVIDG 465 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~ 465 (512)
.+|...|++++|...+++..+.. .+.....+..+...+...|+ +++|..++++. +..| ....+..+...
T Consensus 272 ~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~ 348 (383)
T 3ulq_A 272 QIHYKLGKIDKAHEYHSKGMAYSQKAGDVIYLSEFEFLKSLYLSGPDEEAIQGFFDFLESK---MLYADLEDFAIDVAKY 348 (383)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHTSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHH
T ss_pred HHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHHC---cCHHHHHHHHHHHHHH
Confidence 89999999999999988876421 12222345667788888888 66777776655 2233 34467778889
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010383 466 ACKLSMKREAYQILREMRK 484 (512)
Q Consensus 466 ~~~~g~~~~a~~~~~~m~~ 484 (512)
|...|++++|.+.+++..+
T Consensus 349 y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 349 YHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHH
Confidence 9999999999999988764
No 68
>3ro2_A PINS homolog, G-protein-signaling modulator 2; TPR repeat, protein-protein interaction, protein-binding, PR binding; 2.30A {Mus musculus}
Probab=99.51 E-value=1.9e-13 Score=122.47 Aligned_cols=281 Identities=14% Similarity=0.061 Sum_probs=154.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCC----hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010383 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPN----SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
.+......+...|++++|...|+++.+.. +.+ ...+..+...+...|++++|...+.+.++......+......+
T Consensus 7 ~l~~~g~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~ 85 (338)
T 3ro2_A 7 ELALEGERLCKSGDCRAGVSFFEAAVQVG-TEDLKTLSAIYSQLGNAYFYLHDYAKALEYHHHDLTLARTIGDQLGEAKA 85 (338)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-CSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHHHhccHHHHHHHHHHHHhhC-cccHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhhcccccHHHHHH
Confidence 34455666677777777777777776642 112 2456666677777777777777777766655444333333455
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcCCCCC-----CCcchhHHHHHHHHHhcCC--------------------hhhHHHH
Q 010383 107 FANLVDSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGR--------------------NHGASRV 161 (512)
Q Consensus 107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~--------------------~~~a~~~ 161 (512)
+..+...+...|++++|...+++...... .....++..+...+...|+ +++|...
T Consensus 86 ~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~A~~~ 165 (338)
T 3ro2_A 86 SGNLGNTLKVLGNFDEAIVCCQRHLDISRELNDKVGEARALYNLGNVYHAKGKSFGCPGPQDTGEFPEDVRNALQAAVDL 165 (338)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHTSSSSSCC----CCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHcCcccccchhhhhhhhhhhHHHHHHHHHHH
Confidence 66666666677777777666665432110 0012245555566666666 5666655
Q ss_pred HHHHHHc----CCCC-CcchHHHHHHHHhccCchhHHHHHHHHHHhCCCC-C----chhhHHHHHHHHhccCCHHHHHHH
Q 010383 162 VYVMRKR----GLTP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYL-P----SEHTYKVLVEGLCGESDLEKARKV 231 (512)
Q Consensus 162 ~~~~~~~----g~~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~----~~~~~~~l~~~~~~~g~~~~a~~~ 231 (512)
++..... +..| ...++..+...+...|++++|.+.++++.+.... + ...++..+...+...|++++|...
T Consensus 166 ~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~ 245 (338)
T 3ro2_A 166 YEENLSLVTALGDRAAQGRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERRAYSNLGNAYIFLGEFETASEY 245 (338)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHTCHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHcCCHHHHHHH
Confidence 5544321 1111 1234555566666666666666666665432100 0 122455555566666666666666
Q ss_pred HHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCC-CCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC-
Q 010383 232 LQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQC-QPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK- 309 (512)
Q Consensus 232 ~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~- 309 (512)
+++...... ..+. .....++..+...+...|++++|...+++.....
T Consensus 246 ~~~al~~~~-------------------------------~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~~~~ 294 (338)
T 3ro2_A 246 YKKTLLLAR-------------------------------QLKDRAVEAQSCYSLGNTYTLLQDYEKAIDYHLKHLAIAQ 294 (338)
T ss_dssp HHHHHHHHH-------------------------------HTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHH-------------------------------hhcchhHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHH
Confidence 655442100 0000 0013455666667777777777777776654321
Q ss_pred ---CCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010383 310 ---FCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343 (512)
Q Consensus 310 ---~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 343 (512)
.......++..+...+...|++++|...+.+.+.
T Consensus 295 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~a~~ 331 (338)
T 3ro2_A 295 ELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEKHLE 331 (338)
T ss_dssp HHTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred hcCCcHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHH
Confidence 0011234566677777777777777777776553
No 69
>3ulq_A Response regulator aspartate phosphatase F; tetratricopeptide repeat, response regulator helix-turn-HELX binding, 3-helix bundle; 2.30A {Bacillus subtilis}
Probab=99.51 E-value=5.3e-13 Score=121.92 Aligned_cols=239 Identities=9% Similarity=-0.073 Sum_probs=116.2
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC------CCcchhHHH
Q 010383 71 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS------VNEEFACGH 144 (512)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~------~~~~~~~~~ 144 (512)
...+...|++++|...+.+.++.....++......++..+...+...|++++|...+++..+... .....+++.
T Consensus 110 g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~ 189 (383)
T 3ulq_A 110 GMYELDQREYLSAIKFFKKAESKLIFVKDRIEKAEFFFKMSESYYYMKQTYFSMDYARQAYEIYKEHEAYNIRLLQCHSL 189 (383)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTCSTTHHHHHHHHHH
T ss_pred HHHHHHhcCHHHHHHHHHHHHHHHhhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCccchHHHHHHHHH
Confidence 34455566666666666665544333222122334555555555556665555555544322100 011123444
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCC-CC----cchHHHHHHHHhccCchhHHHHHHHHHHhC----CC-CCchhhHHH
Q 010383 145 MIDSLCRSGRNHGASRVVYVMRKRGLT-PS----LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GY-LPSEHTYKV 214 (512)
Q Consensus 145 l~~~~~~~~~~~~a~~~~~~~~~~g~~-p~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~-~~~~~~~~~ 214 (512)
+..+|...|++++|...++...+.... ++ ..++..+...|...|++++|.+.+++..+. +. +....++..
T Consensus 190 lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~ 269 (383)
T 3ulq_A 190 FATNFLDLKQYEDAISHFQKAYSMAEAEKQPQLMGRTLYNIGLCKNSQSQYEDAIPYFKRAIAVFEESNILPSLPQAYFL 269 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCGGGHHHHHHH
T ss_pred HHHHHHHhcCHHHHHHHHHHHHHHHHHcCChHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhccchhHHHHHHH
Confidence 444555555555555555444321000 00 113444444444455555555554444431 11 122334444
Q ss_pred HHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC
Q 010383 215 LVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR 294 (512)
Q Consensus 215 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 294 (512)
+...+...|++++|...+++..... .+.+.+.....+..+...+...|+
T Consensus 270 l~~~~~~~g~~~~A~~~~~~al~~~-------------------------------~~~~~~~~~~~~~~l~~~~~~~~~ 318 (383)
T 3ulq_A 270 ITQIHYKLGKIDKAHEYHSKGMAYS-------------------------------QKAGDVIYLSEFEFLKSLYLSGPD 318 (383)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHH-------------------------------HHHTCHHHHHHHHHHHHHHTSSCC
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHH-------------------------------HHcCCHHHHHHHHHHHHHHhCCCc
Confidence 4444444444444444444433210 001111112234566777777787
Q ss_pred ---HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcc
Q 010383 295 ---IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMP 343 (512)
Q Consensus 295 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 343 (512)
+++|+.++++... .+.....+..+...|...|++++|...+.+.+.
T Consensus 319 ~~~~~~al~~~~~~~~---~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 367 (383)
T 3ulq_A 319 EEAIQGFFDFLESKML---YADLEDFAIDVAKYYHERKNFQKASAYFLKVEQ 367 (383)
T ss_dssp HHHHHHHHHHHHHTTC---HHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCcC---HHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 6777777766521 133445667788888888888888888877653
No 70
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.49 E-value=1.2e-12 Score=122.60 Aligned_cols=196 Identities=10% Similarity=-0.053 Sum_probs=145.4
Q ss_pred ChhhHHHHHHHHHhcCCH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010383 278 DVITLNTVINGFCKMGRI-EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 356 (512)
+...+..+..++...|++ ++|+..|++..+.. +.+...|..+..+|...|++++|...|.+.+.. .|+...+..
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~---~p~~~~~~~ 175 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLE--PELVEAWNQLGEVYWKKGDVTSAHTCFSGALTH---CKNKVSLQN 175 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT---CCCHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhh---CCCHHHHHH
Confidence 566677777777777777 77777777777654 456677777777777778888888777776543 355667777
Q ss_pred HHHHHHcc---------CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc--------CCHHHHHHHHHHhhcCCCC-
Q 010383 357 VLRGLFRL---------RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES--------NQLDEAKRFWDDIVWPSNI- 418 (512)
Q Consensus 357 l~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------g~~~~a~~~~~~~~~~~~~- 418 (512)
+...+... |++++|...|++..+.. +.+...+..+..+|... |++++|...|+++.+.. +
T Consensus 176 lg~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 253 (474)
T 4abn_A 176 LSMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD-VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK 253 (474)
T ss_dssp HHHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG
T ss_pred HHHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC
Confidence 77777777 88888888888887754 45567777888888777 88888888888887653 3
Q ss_pred --CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 419 --HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481 (512)
Q Consensus 419 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (512)
.+...|..+..+|...|++++|.+.|++..+.. +.+...+..+...+...|++++|.+.+.+
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~~ 317 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKGK 317 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTTT
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhcc
Confidence 467788888888888888888888888887764 22566777888888888888888765443
No 71
>2ond_A Cleavage stimulation factor 77 kDa subunit; HAT domain, structural protein; 2.80A {Mus musculus} SCOP: a.118.8.7
Probab=99.48 E-value=2.7e-11 Score=106.73 Aligned_cols=168 Identities=9% Similarity=0.016 Sum_probs=105.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHH-HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV-TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 356 (512)
+...|..++..+.+.|++++|..+|++..+.. +.+.. .|..++..+.+.|++++|..+|.+.+... +++...|..
T Consensus 98 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~--p~~~~~~~~ 173 (308)
T 2ond_A 98 NMLLYFAYADYEESRMKYEKVHSIYNRLLAIE--DIDPTLVYIQYMKFARRAEGIKSGRMIFKKAREDA--RTRHHVYVT 173 (308)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSS--SSCTHHHHHHHHHHHHHHHCHHHHHHHHHHHHTST--TCCTHHHHH
T ss_pred cHHHHHHHHHHHHhcCCHHHHHHHHHHHHhcc--ccCccHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC--CCCHHHHHH
Confidence 44456666666666666667777666666543 22232 56666666666677777777776655432 223333333
Q ss_pred HHHHHH-ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC-CCC--CHHhHHHHHHHHH
Q 010383 357 VLRGLF-RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPS-NIH--DNYVYAAMIKGLC 432 (512)
Q Consensus 357 l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~-~~~--~~~~~~~l~~~~~ 432 (512)
...... ..|++++|..+|++..+.. +.+...+..++..+.+.|++++|..+|++++... .+| ....|..++..+.
T Consensus 174 ~a~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~~l~p~~~~~l~~~~~~~~~ 252 (308)
T 2ond_A 174 AALMEYYCSKDKSVAFKIFELGLKKY-GDIPEYVLAYIDYLSHLNEDNNTRVLFERVLTSGSLPPEKSGEIWARFLAFES 252 (308)
T ss_dssp HHHHHHHTSCCHHHHHHHHHHHHHHH-TTCHHHHHHHHHHHHTTCCHHHHHHHHHHHHHSSSSCGGGCHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHhccCCCHHHHHHHHHHHHHHHH
Confidence 322211 2577777777777777642 4456677777777777788888888888777642 233 3556777777777
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 010383 433 RSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 433 ~~g~~~~a~~~~~~~~~~ 450 (512)
+.|+.++|..+++++.+.
T Consensus 253 ~~g~~~~a~~~~~~a~~~ 270 (308)
T 2ond_A 253 NIGDLASILKVEKRRFTA 270 (308)
T ss_dssp HHSCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHH
Confidence 778888888888777765
No 72
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.45 E-value=2.9e-12 Score=113.40 Aligned_cols=240 Identities=12% Similarity=-0.010 Sum_probs=157.4
Q ss_pred cccHHHHHHHHHccCChhhHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CC
Q 010383 244 TRICNIYLRALCLIKNPTELLNVLVFMLQT-------QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KF 310 (512)
Q Consensus 244 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~ 310 (512)
...+..+...+...|++++|...++.+.+. ..+.....+..+...+...|++++|...+++.... ..
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~ 106 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIREKTLGKD 106 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCTT
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCC
Confidence 346777788888888999888888887763 22334566777888888888999988888887753 21
Q ss_pred CCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccC-----CC-CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC----
Q 010383 311 CAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQR-----GY-SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI---- 380 (512)
Q Consensus 311 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-----~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~---- 380 (512)
.+.....+..+...+...|++++|...+.+.+... +. +.....+..+...+...|++++|...++++.+.
T Consensus 107 ~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~~~~ 186 (311)
T 3nf1_A 107 HPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNNLALLCQNQGKYEEVEYYYQRALEIYQTK 186 (311)
T ss_dssp CHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHT
T ss_pred ChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHH
Confidence 13345677788888888888888888888876432 11 223455777778888888888888888888763
Q ss_pred --CCCC-ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCCCCH-------HhHHHHHHHHHhcCCHHHHHHH
Q 010383 381 --GVVA-DSTTYAIVIDGLCESNQLDEAKRFWDDIVWP-------SNIHDN-------YVYAAMIKGLCRSGKIHEAVHF 443 (512)
Q Consensus 381 --~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~ 443 (512)
+..| ...++..+..+|...|++++|...++++.+. ...+.. ..+..+...+...+.+.++...
T Consensus 187 ~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~ 266 (311)
T 3nf1_A 187 LGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENKPIWMHAEEREECKGKQKDGTSFGEYGGW 266 (311)
T ss_dssp SCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------CCHHHHHHHHHHC-------CCSCCCC--
T ss_pred hCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchHHHHHHHHHHHHhcCchhhHHHHHHHHHH
Confidence 1122 2346777888888888888888888887642 111111 1122222233334455555556
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 444 LYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 444 ~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+....... +.+..++..+..+|.+.|++++|.+++++..+
T Consensus 267 ~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 306 (311)
T 3nf1_A 267 YKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMR 306 (311)
T ss_dssp -------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 65555432 33567788999999999999999999999875
No 73
>3nf1_A KLC 1, kinesin light chain 1; TPR, structural genomics consortium (SGC), motor PR transport protein; 2.80A {Homo sapiens}
Probab=99.44 E-value=4.1e-13 Score=118.92 Aligned_cols=248 Identities=14% Similarity=0.078 Sum_probs=144.2
Q ss_pred cchHHHHHHHHhccCchhHHHHHHHHHHhC-------CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCccc
Q 010383 174 LVSYNSIVHGLCKHGGCMRAYQLLEEGIQF-------GYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRI 246 (512)
Q Consensus 174 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~ 246 (512)
..++..+...+...|++++|...++++.+. ..+....++..+...+...|++++|...+++.....
T Consensus 27 ~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~------- 99 (311)
T 3nf1_A 27 LRTLHNLVIQYASQGRYEVAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKDAANLLNDALAIR------- 99 (311)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-------
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHH-------
Confidence 446677777788888888888888877663 223345567777777777888888887777665320
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCcHHHHHH
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTT 320 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~ 320 (512)
........+.....+..+...+...|++++|...+++..+. +..+.....+..
T Consensus 100 ---------------------~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 158 (311)
T 3nf1_A 100 ---------------------EKTLGKDHPAVAATLNNLAVLYGKRGKYKEAEPLCKRALEIREKVLGKDHPDVAKQLNN 158 (311)
T ss_dssp ---------------------HHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHH
T ss_pred ---------------------HHHhCCCChHHHHHHHHHHHHHHHcCcHHHHHHHHHHHHHHHHHhcCCCChHHHHHHHH
Confidence 00000001113445566666777777777777777766543 111233455666
Q ss_pred HHHHHhhcCCHHHHHHHHHhhccc------CCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCChH
Q 010383 321 IIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVADST 387 (512)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~~ 387 (512)
+...+...|++++|...+.+.+.. ...+....++..+...+...|++++|...++++.+. ...+...
T Consensus 159 la~~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 238 (311)
T 3nf1_A 159 LALLCQNQGKYEEVEYYYQRALEIYQTKLGPDDPNVAKTKNNLASCYLKQGKFKQAETLYKEILTRAHEREFGSVDDENK 238 (311)
T ss_dssp HHHHHHTTTCHHHHHHHHHHHHHHHHHTSCTTCHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHC------C
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCCcchH
Confidence 777777777777777777765543 111222345666777777888888888888777652 1111111
Q ss_pred -------hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 388 -------TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 388 -------~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+..+...+...+.+.++...++...... +.+..++..+..+|...|++++|.+.+++..+.
T Consensus 239 ~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~l 307 (311)
T 3nf1_A 239 PIWMHAEEREECKGKQKDGTSFGEYGGWYKACKVDS-PTVTTTLKNLGALYRRQGKFEAAETLEEAAMRS 307 (311)
T ss_dssp CHHHHHHHHHHC-------CCSCCCC---------C-HHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCchhhHHHHHHHHHHHhhcCCCC-chHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHH
Confidence 12222233344455666666666665432 445667888999999999999999999888763
No 74
>4abn_A Tetratricopeptide repeat protein 5; P53 cofactor, stress-response, DNA repair, gene regulation; 2.05A {Mus musculus}
Probab=99.44 E-value=4.5e-12 Score=118.59 Aligned_cols=195 Identities=8% Similarity=-0.038 Sum_probs=141.7
Q ss_pred CcccHHHHHHHHHccCCh-hhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010383 243 RTRICNIYLRALCLIKNP-TELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321 (512)
Q Consensus 243 ~~~~~~~l~~~~~~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 321 (512)
....+..+...+...|++ ++|+..++...+..+ .+...|..+..+|...|++++|...|++..+.. |+...+..+
T Consensus 101 ~a~~~~~lg~~~~~~g~~~~~A~~~~~~al~~~p-~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~~~---p~~~~~~~l 176 (474)
T 4abn_A 101 EAQALMLKGKALNVTPDYSPEAEVLLSKAVKLEP-ELVEAWNQLGEVYWKKGDVTSAHTCFSGALTHC---KNKVSLQNL 176 (474)
T ss_dssp CHHHHHHHHHHHTSSSSCCHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTC---CCHHHHHHH
T ss_pred hHHHHHHHHHHHHhccccHHHHHHHHHHHHhhCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC---CCHHHHHHH
Confidence 334444445555555555 555555555554432 256677788888888888888888888887764 446777778
Q ss_pred HHHHhhc---------CCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc--------CCHHHHHHHHHHHHhCCCC-
Q 010383 322 IFGLLNV---------GRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL--------RRVEEAKEVFNCMLGIGVV- 383 (512)
Q Consensus 322 ~~~~~~~---------~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------~~~~~a~~~~~~~~~~~~~- 383 (512)
...+... |++++|+..+.+.+... +.+...|..+..+|... |++++|...|++..+.. +
T Consensus 177 g~~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~~~~g~~~~A~~~~~~al~~~-p~ 253 (474)
T 4abn_A 177 SMVLRQLQTDSGDEHSRHVMDSVRQAKLAVQMD--VLDGRSWYILGNAYLSLYFNTGQNPKISQQALSAYAQAEKVD-RK 253 (474)
T ss_dssp HHHHTTCCCSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHC-GG
T ss_pred HHHHHHhccCChhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHHHHhhccccchHHHHHHHHHHHHHhC-CC
Confidence 8888888 88888888888876554 44566777777888777 88888888888888753 3
Q ss_pred --CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010383 384 --ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445 (512)
Q Consensus 384 --~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 445 (512)
.+...+..+..+|...|++++|...|+++.+.. +.+...+..+..++...|++++|.+.+.
T Consensus 254 ~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~a~~~l~~~~~~lg~~~eAi~~~~ 316 (474)
T 4abn_A 254 ASSNPDLHLNRATLHKYEESYGEALEGFSQAAALD-PAWPEPQQREQQLLEFLSRLTSLLESKG 316 (474)
T ss_dssp GGGCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHHHHTT
T ss_pred cccCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 467788888888888999999999998887664 5566678888888888888888876553
No 75
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.42 E-value=6.6e-11 Score=107.60 Aligned_cols=279 Identities=13% Similarity=-0.011 Sum_probs=159.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh----hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010383 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (512)
.......+...|++++|...+++........+.. +++.+...+...|++++|...+.+.....+..+.......++
T Consensus 17 ~~~~a~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~ 96 (373)
T 1hz4_A 17 NALRAQVAINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSL 96 (373)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHH
Confidence 4445556778899999999999987753212222 455566777888999999998888887666543333333445
Q ss_pred HHHHHHHHccCChhHHHHHHHhcCCC----CCC--C-cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCC----Ccch
Q 010383 108 ANLVDSLCREGYVNEVFRIAEDMPQG----KSV--N-EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTP----SLVS 176 (512)
Q Consensus 108 ~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~--~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p----~~~~ 176 (512)
..+...+...|++++|...+++.... +.. | ....+..+...+...|++++|...+++........ ...+
T Consensus 97 ~~la~~~~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~ 176 (373)
T 1hz4_A 97 IQQSEILFAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQC 176 (373)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHH
T ss_pred HHHHHHHHHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHH
Confidence 66777788888888888777765431 111 1 22344556667777777777777777765532211 1234
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCch-hhHH-----HHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHH
Q 010383 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE-HTYK-----VLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIY 250 (512)
Q Consensus 177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~-----~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l 250 (512)
+..+...+...|++++|...+++.......++. ..+. ..+..+...|+++.|...++........+..
T Consensus 177 ~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~------ 250 (373)
T 1hz4_A 177 LAMLIQCSLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNH------ 250 (373)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCG------
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcch------
Confidence 556666667777777777777766543111111 1111 1223355667777777766665432111000
Q ss_pred HHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC---CCCCcH-HHHHHHHHHHh
Q 010383 251 LRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK---FCAPDA-VTFTTIIFGLL 326 (512)
Q Consensus 251 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~---~~~~~~-~~~~~l~~~~~ 326 (512)
.....+..+...+...|++++|...++...... ...++. ..+..+..++.
T Consensus 251 --------------------------~~~~~~~~la~~~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~la~~~~ 304 (373)
T 1hz4_A 251 --------------------------FLQGQWRNIARAQILLGEFEPAEIVLEELNENARSLRLMSDLNRNLLLLNQLYW 304 (373)
T ss_dssp --------------------------GGHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHH
T ss_pred --------------------------hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhCcchhhHHHHHHHHHHHHH
Confidence 011123445556666666666666666554311 001111 24455556666
Q ss_pred hcCCHHHHHHHHHhhc
Q 010383 327 NVGRIQEALNLLYQVM 342 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~ 342 (512)
..|+.++|...+.+.+
T Consensus 305 ~~g~~~~A~~~l~~al 320 (373)
T 1hz4_A 305 QAGRKSDAQRVLLDAL 320 (373)
T ss_dssp HHTCHHHHHHHHHHHH
T ss_pred HhCCHHHHHHHHHHHH
Confidence 6777777776666654
No 76
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.41 E-value=3.8e-11 Score=97.05 Aligned_cols=165 Identities=12% Similarity=0.039 Sum_probs=126.1
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHH
Q 010383 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVID 394 (512)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 394 (512)
...+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.. +.+...+..+..
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~ 84 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA-PDNVKVATVLGL 84 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 4456666777777888888888887755332 3456667777777888888888888888877753 456677778888
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010383 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474 (512)
Q Consensus 395 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 474 (512)
.+...|++++|...++++.+.. +.+...+..+...+...|++++|...++++.+.. +.+...+..+...+...|++++
T Consensus 85 ~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~ 162 (186)
T 3as5_A 85 TYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHEE 162 (186)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHHH
Confidence 8888888888888888887654 5567778888888888888888888888887764 3356778888888888888888
Q ss_pred HHHHHHHHHH
Q 010383 475 AYQILREMRK 484 (512)
Q Consensus 475 a~~~~~~m~~ 484 (512)
|.+.++++.+
T Consensus 163 A~~~~~~~~~ 172 (186)
T 3as5_A 163 ALPHFKKANE 172 (186)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 8888888775
No 77
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.40 E-value=3.7e-11 Score=109.39 Aligned_cols=229 Identities=10% Similarity=-0.032 Sum_probs=153.2
Q ss_pred HHHccCChhhHHHHHHHHHhcCC-CC----ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCC-----CCcHHHHHHHH
Q 010383 253 ALCLIKNPTELLNVLVFMLQTQC-QP----DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFC-----APDAVTFTTII 322 (512)
Q Consensus 253 ~~~~~~~~~~a~~~~~~~~~~~~-~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-----~~~~~~~~~l~ 322 (512)
.+...|++++|...+....+... .+ ....+..+...|...|+++.|...+++..+.... .....++..+.
T Consensus 110 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg 189 (378)
T 3q15_A 110 YEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHILQALDIYQNHPLYSIRTIQSLFVIA 189 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTSTTCHHHHHHHHHHHH
T ss_pred HHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHhCCCchhhHHHHHHHHH
Confidence 34445555555555555443211 01 2345677777888888888888888776542110 11245677788
Q ss_pred HHHhhcCCHHHHHHHHHhhcccCCCCCC----hhhHHHHHHHHHccCCHHHHHHHHHHHHhC----CCCCChHhHHHHHH
Q 010383 323 FGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYNAVLRGLFRLRRVEEAKEVFNCMLGI----GVVADSTTYAIVID 394 (512)
Q Consensus 323 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~ 394 (512)
..+...|++++|.+.+.+.+....-.++ ..++..+...|...|++++|...+++..+. +.+....++..+..
T Consensus 190 ~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~ 269 (378)
T 3q15_A 190 GNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHFQKAAKVSREKVPDLLPKVLFGLSW 269 (378)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHH
T ss_pred HHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHhhCChhHHHHHHHHHH
Confidence 8888888888888888776643211112 345677888888899999999999888761 22334667888889
Q ss_pred HHHhcCCHHHHHHHHHHhhcCC----CCCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCC-ChhhHHHHHHHH
Q 010383 395 GLCESNQLDEAKRFWDDIVWPS----NIHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTP-NIVCYNVVIDGA 466 (512)
Q Consensus 395 ~~~~~g~~~~a~~~~~~~~~~~----~~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~ 466 (512)
+|.+.|++++|...+++..+.. .+.....+..+...+...++ +.+|...+++ .+..| ....+..+...|
T Consensus 270 ~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~---~~~~~~~~~~~~~la~~y 346 (378)
T 3q15_A 270 TLCKAGQTQKAFQFIEEGLDHITARSHKFYKELFLFLQAVYKETVDERKIHDLLSYFEK---KNLHAYIEACARSAAAVF 346 (378)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHCCTTCCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHH---TTCHHHHHHHHHHHHHHH
T ss_pred HHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHh---CCChhHHHHHHHHHHHHH
Confidence 9999999999999998876432 12223456666667777788 6777776665 22222 234566788889
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 010383 467 CKLSMKREAYQILREMRK 484 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~m~~ 484 (512)
...|++++|.+.+++..+
T Consensus 347 ~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 347 ESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHH
Confidence 999999999999988764
No 78
>1hz4_A MALT regulatory protein; two-helix bundles, helix repeats, protein superhelix, transc activator; 1.45A {Escherichia coli} SCOP: a.118.8.2
Probab=99.38 E-value=1.3e-10 Score=105.77 Aligned_cols=234 Identities=10% Similarity=-0.053 Sum_probs=168.0
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChH----hHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCh----hhHHHHHHHH
Q 010383 4 LCGLSRVGEAHKLFFDMKSRGHVPNVV----SYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNS----LTYSVLVRGV 74 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~----~~~~~l~~~~ 74 (512)
+...|++++|...+++........+.. +++.+...+...|++++|...+++...... .++. .++..+...+
T Consensus 24 ~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~ 103 (373)
T 1hz4_A 24 AINDGNPDEAERLAKLALEELPPGWFYSRIVATSVLGEVLHCKGELTRSLALMQQTEQMARQHDVWHYALWSLIQQSEIL 103 (373)
T ss_dssp HHHTTCHHHHHHHHHHHHHTCCTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHcCCCCchhHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHH
Confidence 456899999999999988864332322 567777888999999999999998765310 1122 2356677888
Q ss_pred HhcCChhhHHHHHHHHHHHhhhcCCC--CcchHhHHHHHHHHHccCChhHHHHHHHhcCCC----CCCCcchhHHHHHHH
Q 010383 75 LRTRDVERANVLMFKLWERMKEEEDL--SVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----KSVNEEFACGHMIDS 148 (512)
Q Consensus 75 ~~~~~~~~a~~~~~~~~~~~~~~~~~--~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~~~~~~~~l~~~ 148 (512)
...|++++|...+.+.++..+...+. ......+..+...+...|++++|...+++.... +......++..+...
T Consensus 104 ~~~G~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~la~~ 183 (373)
T 1hz4_A 104 FAQGFLQTAWETQEKAFQLINEQHLEQLPMHEFLVRIRAQLLWAWARLDEAEASARSGIEVLSSYQPQQQLQCLAMLIQC 183 (373)
T ss_dssp HHTTCHHHHHHHHHHHHHHHHHTTCTTSTHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTSCGGGGHHHHHHHHHH
T ss_pred HHCCCHHHHHHHHHHHHHHHHHhccccCcHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHhhccCcHHHHHHHHHHHHH
Confidence 89999999999999998877655433 223456777888999999999999999875432 211123456778888
Q ss_pred HHhcCChhhHHHHHHHHHHcCCCCCc-chHH-----HHHHHHhccCchhHHHHHHHHHHhCCCCC---chhhHHHHHHHH
Q 010383 149 LCRSGRNHGASRVVYVMRKRGLTPSL-VSYN-----SIVHGLCKHGGCMRAYQLLEEGIQFGYLP---SEHTYKVLVEGL 219 (512)
Q Consensus 149 ~~~~~~~~~a~~~~~~~~~~g~~p~~-~~~~-----~l~~~~~~~~~~~~a~~~~~~~~~~~~~~---~~~~~~~l~~~~ 219 (512)
+...|++++|...++........++. ..+. ..+..+...|++++|...+++.......+ ....+..+...+
T Consensus 184 ~~~~g~~~~A~~~l~~a~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~la~~~ 263 (373)
T 1hz4_A 184 SLARGDLDNARSQLNRLENLLGNGKYHSDWISNANKVRVIYWQMTGDKAAAANWLRHTAKPEFANNHFLQGQWRNIARAQ 263 (373)
T ss_dssp HHHHTCHHHHHHHHHHHHHHHTTSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHSCCCCCTTCGGGHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHHHHhccCcchhHHHHHHHHHHHHHHHCCCHHHHHHHHHhCCCCCCCcchhhHHHHHHHHHHH
Confidence 99999999999999988764222221 1222 23344778999999999999887643221 122456677888
Q ss_pred hccCCHHHHHHHHHHHHh
Q 010383 220 CGESDLEKARKVLQFMLS 237 (512)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~ 237 (512)
...|++++|...++....
T Consensus 264 ~~~g~~~~A~~~l~~a~~ 281 (373)
T 1hz4_A 264 ILLGEFEPAEIVLEELNE 281 (373)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHcCCHHHHHHHHHHHHH
Confidence 888999999988887754
No 79
>3as5_A MAMA; tetratricopeptide repeats (TPR) containing protein, TPR PROT protein-protein interactions, protein binding; 2.00A {Magnetospirillum magnetotacticum} PDB: 3as4_A 3asd_A 3asg_A 3ash_A 3as8_A 3asf_A
Probab=99.38 E-value=5e-11 Score=96.36 Aligned_cols=166 Identities=12% Similarity=0.074 Sum_probs=138.6
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHH
Q 010383 279 VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVL 358 (512)
Q Consensus 279 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~ 358 (512)
...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|...+.+.+... +.+...+..+.
T Consensus 8 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a 83 (186)
T 3as5_A 8 QVYYRDKGISHAKAGRYSQAVMLLEQVYDAD--AFDVDVALHLGIAYVKTGAVDRGTELLERSLADA--PDNVKVATVLG 83 (186)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHTTTCCTT--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHH
T ss_pred hHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--ccChHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC--CCCHHHHHHHH
Confidence 3456677778888899999999998887654 5677888888889999999999999998876553 44667788888
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 010383 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 438 (512)
..+...|++++|...++++.+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+...+...|+++
T Consensus 84 ~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~ 161 (186)
T 3as5_A 84 LTYVQVQKYDLAVPLLIKVAEAN-PINFNVRFRLGVALDNLGRFDEAIDSFKIALGLR-PNEGKVHRAIAFSYEQMGRHE 161 (186)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHhcCHHHHHHHHHHHHhcC-cHhHHHHHHHHHHHHHcCcHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHcCCHH
Confidence 88999999999999999988764 5577788888999999999999999999988764 556788899999999999999
Q ss_pred HHHHHHHHHHHC
Q 010383 439 EAVHFLYELVDS 450 (512)
Q Consensus 439 ~a~~~~~~~~~~ 450 (512)
+|.+.++++.+.
T Consensus 162 ~A~~~~~~~~~~ 173 (186)
T 3as5_A 162 EALPHFKKANEL 173 (186)
T ss_dssp HHHHHHHHHHHH
T ss_pred HHHHHHHHHHHc
Confidence 999999988765
No 80
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.37 E-value=2.6e-11 Score=117.94 Aligned_cols=167 Identities=12% Similarity=0.027 Sum_probs=106.4
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHH
Q 010383 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAI 391 (512)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 391 (512)
+.+..+++.+...+.+.|++++|+..|++.++.. +-+...+..+..+|.+.|++++|+..|++..+.. +.+...|..
T Consensus 6 P~~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~-P~~~~a~~n 82 (723)
T 4gyw_A 6 PTHADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS-PTFADAYSN 82 (723)
T ss_dssp CHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHH
Confidence 3345566666666666666666666666655443 3345566666666666667777777666666643 334556666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010383 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 471 (512)
+..+|...|++++|.+.|+++++.+ +.+...+..+..+|...|++++|++.|++.++... -+...+..+..++...|+
T Consensus 83 Lg~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~P-~~~~a~~~L~~~l~~~g~ 160 (723)
T 4gyw_A 83 MGNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLKP-DFPDAYCNLAHCLQIVCD 160 (723)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CChHHHhhhhhHHHhccc
Confidence 6777777777777777777666543 44556667777777777777777777777666532 245566667777777777
Q ss_pred HHHHHHHHHHHH
Q 010383 472 KREAYQILREMR 483 (512)
Q Consensus 472 ~~~a~~~~~~m~ 483 (512)
+++|.+.++++.
T Consensus 161 ~~~A~~~~~kal 172 (723)
T 4gyw_A 161 WTDYDERMKKLV 172 (723)
T ss_dssp CTTHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 777766666654
No 81
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.36 E-value=1.3e-10 Score=97.45 Aligned_cols=209 Identities=12% Similarity=0.042 Sum_probs=157.8
Q ss_pred CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH
Q 010383 277 PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA 356 (512)
Q Consensus 277 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 356 (512)
.++..+......+...|++++|+..|++..+... +++...+..+..++...|++++|+..+.+.+... +.+...+..
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~-~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~ 81 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTN-NQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIG 81 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTT-TCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccC-CCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHH
Confidence 4667888889999999999999999999988662 2777788889999999999999999999977543 345677888
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCCh-------HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHHH
Q 010383 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADS-------TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAAM 427 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~l 427 (512)
+...+...|++++|...+++..+.. +.+. ..|..+...+...|++++|...++++++.+ +. +...+..+
T Consensus 82 l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l 159 (228)
T 4i17_A 82 KSAAYRDMKNNQEYIATLTEGIKAV-PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence 9999999999999999999998854 3445 457888888999999999999999998763 33 45677888
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH-HHHHHHHh
Q 010383 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV-TWRILDKL 500 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~-~~~~l~~~ 500 (512)
..+|...| ...++++...+ ..+...|.... ....+.+++|...+++..+ +.|+.. +...+..+
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~--l~p~~~~~~~~l~~i 223 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVT--LSPNRTEIKQMQDQV 223 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHHH
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhh--cCCCCHHHHHHHHHH
Confidence 88876544 44455655543 22344444333 3446778999999999988 456544 44444333
No 82
>3q15_A PSP28, response regulator aspartate phosphatase H; tetratricopeptide repeat, 3-helix bundle, phosphorelay signa transduction, phosphatase; 2.19A {Bacillus subtilis}
Probab=99.34 E-value=1.4e-10 Score=105.45 Aligned_cols=319 Identities=10% Similarity=-0.044 Sum_probs=165.0
Q ss_pred CCChHhHHHHHHHH--HhcCChhHHHHHHHHHHhC--CCCCChh--hHHHHHHHH--HhcCChhhHH---------HHHH
Q 010383 26 VPNVVSYTTLIHGY--CRTGEMDVAYKVFDEMRHC--GVLPNSL--TYSVLVRGV--LRTRDVERAN---------VLMF 88 (512)
Q Consensus 26 ~~~~~~~~~l~~~~--~~~~~~~~a~~~~~~m~~~--~~~~~~~--~~~~l~~~~--~~~~~~~~a~---------~~~~ 88 (512)
.|+...-+.|-..| .+.+++++|..+++++.+. .+..|.. .|..++..- ...+....+. ..+.
T Consensus 7 ~~~~~v~~~l~~wy~~i~~~~~~~A~~l~~~i~~~~~~~~~~~~~~~yy~l~~~r~~~~~~~~~~~~~~~~~~~~~~~l~ 86 (378)
T 3q15_A 7 IPSSRVGVKINEWYKMIRQFSVPDAEILKAEVEQDIQQMEEDQDLLIYYSLMCFRHQLMLDYLEPGKTYGNRPTVTELLE 86 (378)
T ss_dssp BCHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHGGGBCCCHHHHHHHHHHHHHHHHHHHTCCC--------CHHHHHH
T ss_pred ccHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHhhcCcccccccccchHHHHH
Confidence 55666777777777 8899999999999988653 2223333 334443321 1122222222 2222
Q ss_pred HHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC-----CCcchhHHHHHHHHHhcCChhhHHHHHH
Q 010383 89 KLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-----VNEEFACGHMIDSLCRSGRNHGASRVVY 163 (512)
Q Consensus 89 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-----~~~~~~~~~l~~~~~~~~~~~~a~~~~~ 163 (512)
.+ +......+.......+......+...|++++|...|++...... .....++..+..+|...|+++.|...++
T Consensus 87 ~i-~~~~~~~~~~l~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~y~~~~~~~~A~~~~~ 165 (378)
T 3q15_A 87 TI-ETPQKKLTGLLKYYSLFFRGMYEFDQKEYVEAIGYYREAEKELPFVSDDIEKAEFHFKVAEAYYHMKQTHVSMYHIL 165 (378)
T ss_dssp HH-HGGGHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTGGGCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHH
T ss_pred HH-hccCCCCccHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHhhCCChHHHHHHHHHHHHHHHHcCCcHHHHHHHH
Confidence 22 11110000000111223344555677777777777776544311 0123455566667777777777777766
Q ss_pred HHHHcCC-----CC-CcchHHHHHHHHhccCchhHHHHHHHHHHhC----CCCC-chhhHHHHHHHHhccCCHHHHHHHH
Q 010383 164 VMRKRGL-----TP-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLP-SEHTYKVLVEGLCGESDLEKARKVL 232 (512)
Q Consensus 164 ~~~~~g~-----~p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~ 232 (512)
+..+... .+ ...+++.+...|...|++++|.+.+++..+. +..+ ...++..+..++...|++++|...+
T Consensus 166 ~al~~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~lg~~y~~~~~~~~A~~~~ 245 (378)
T 3q15_A 166 QALDIYQNHPLYSIRTIQSLFVIAGNYDDFKHYDKALPHLEAALELAMDIQNDRFIAISLLNIANSYDRSGDDQMAVEHF 245 (378)
T ss_dssp HHHHHHHTSTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHH
T ss_pred HHHHHHHhCCCchhhHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHCCCHHHHHHHH
Confidence 6544210 00 1235556666666677777777766665542 1111 1234555566666666666666666
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCC--
Q 010383 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKF-- 310 (512)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-- 310 (512)
++..... ... .. +....++..+...+.+.|++++|...+++......
T Consensus 246 ~~al~~~----------------------------~~~--~~-~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~ 294 (378)
T 3q15_A 246 QKAAKVS----------------------------REK--VP-DLLPKVLFGLSWTLCKAGQTQKAFQFIEEGLDHITAR 294 (378)
T ss_dssp HHHHHHH----------------------------HHH--CG-GGHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCCTT
T ss_pred HHHHHHH----------------------------Hhh--CC-hhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHc
Confidence 6554310 000 11 11244555666666666777777776666554211
Q ss_pred -CCCcHHHHHHHHHHHhhcCC---HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010383 311 -CAPDAVTFTTIIFGLLNVGR---IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 311 -~~~~~~~~~~l~~~~~~~~~---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 379 (512)
.+.....+..+...+...++ ..+|+..+.+. ...+.....+..+...|...|++++|...|++..+
T Consensus 295 ~~~~~~~~~~~l~~ly~~~~~~~~~~~al~~~~~~---~~~~~~~~~~~~la~~y~~~g~~~~A~~~~~~al~ 364 (378)
T 3q15_A 295 SHKFYKELFLFLQAVYKETVDERKIHDLLSYFEKK---NLHAYIEACARSAAAVFESSCHFEQAAAFYRKVLK 364 (378)
T ss_dssp CCSCHHHHHHHHHHHHSSSCCHHHHHHHHHHHHHT---TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhCCCcHHHHHHHHHHHHhC---CChhHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 02223344555555556666 66666666541 11122233455566677777777777777766654
No 83
>4i17_A Hypothetical protein; TPR repeats protein, structural genomics, joint center for S genomics, JCSG, protein structure initiative; HET: MSE; 1.83A {Bacteroides fragilis}
Probab=99.33 E-value=2.1e-10 Score=96.15 Aligned_cols=197 Identities=11% Similarity=-0.003 Sum_probs=156.1
Q ss_pred CCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH
Q 010383 242 DRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTI 321 (512)
Q Consensus 242 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 321 (512)
.++..+......+...|++++|...|....+...+++...+..+..++...|++++|+..+++..+.. +.+...+..+
T Consensus 5 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 82 (228)
T 4i17_A 5 TDPNQLKNEGNDALNAKNYAVAFEKYSEYLKLTNNQDSVTAYNCGVCADNIKKYKEAADYFDIAIKKN--YNLANAYIGK 82 (228)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTTTCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT--CSHHHHHHHH
T ss_pred cCHHHHHHHHHHHHHccCHHHHHHHHHHHHhccCCCCcHHHHHHHHHHHHhhcHHHHHHHHHHHHHhC--cchHHHHHHH
Confidence 34567888889999999999999999999998765677888889999999999999999999999876 5678899999
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCCh-------hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCC--ChHhHHHH
Q 010383 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGI-------VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVA--DSTTYAIV 392 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~--~~~~~~~l 392 (512)
...+...|++++|...+.+.+... +.+. ..|..+...+...|++++|...|++..+.. +. +...+..+
T Consensus 83 ~~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~~l 159 (228)
T 4i17_A 83 SAAYRDMKNNQEYIATLTEGIKAV--PGNATIEKLYAIYYLKEGQKFQQAGNIEKAEENYKHATDVT-SKKWKTDALYSL 159 (228)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSS-CHHHHHHHHHHH
T ss_pred HHHHHHcccHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHHhHHHHHhccHHHHHHHHHHHHhcC-CCcccHHHHHHH
Confidence 999999999999999999987654 2333 457778888899999999999999999863 33 35677888
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 393 IDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 393 ~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
..+|...| ..+++++...+ ..+...+.... ....+.+++|...+++..+..
T Consensus 160 ~~~~~~~~-----~~~~~~a~~~~-~~~~~~~~~~~--~~~~~~~~~A~~~~~~a~~l~ 210 (228)
T 4i17_A 160 GVLFYNNG-----ADVLRKATPLA-SSNKEKYASEK--AKADAAFKKAVDYLGEAVTLS 210 (228)
T ss_dssp HHHHHHHH-----HHHHHHHGGGT-TTCHHHHHHHH--HHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHH-----HHHHHHHHhcc-cCCHHHHHHHH--HHHHHHHHHHHHHHHHHhhcC
Confidence 88886554 44455555443 33444444433 334567899999999998864
No 84
>4gyw_A UDP-N-acetylglucosamine--peptide N- acetylglucosaminyltransferase 110 kDa subunit...; GT-B, glycosyltransferase, glcnacylation, transferase-peptid; HET: UDP NAG; 1.70A {Homo sapiens} PDB: 3pe3_A* 3pe4_A* 4ay5_A* 4ay6_A* 3tax_A* 4gyy_A* 4gz3_A* 4gz5_A* 4gz6_A*
Probab=99.32 E-value=5.7e-11 Score=115.58 Aligned_cols=166 Identities=17% Similarity=0.103 Sum_probs=137.4
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 357 (512)
+...++.+...+.+.|++++|+..|++..+.. +.+..++..+..++.+.|++++|+..|++.++.. +-+...|..+
T Consensus 8 ~a~al~nLG~~~~~~G~~~eAi~~~~kAl~l~--P~~~~a~~nLg~~l~~~g~~~eA~~~~~~Al~l~--P~~~~a~~nL 83 (723)
T 4gyw_A 8 HADSLNNLANIKREQGNIEEAVRLYRKALEVF--PEFAAAHSNLASVLQQQGKLQEALMHYKEAIRIS--PTFADAYSNM 83 (723)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 45678888888889999999999998888765 5677888888888999999999999888877554 3456788888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010383 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (512)
..++...|++++|++.|++..+.. +-+...+..+..+|...|++++|...|+++++.. +.+...+..+..++...|++
T Consensus 84 g~~l~~~g~~~~A~~~~~kAl~l~-P~~~~a~~~Lg~~~~~~g~~~eAi~~~~~Al~l~-P~~~~a~~~L~~~l~~~g~~ 161 (723)
T 4gyw_A 84 GNTLKEMQDVQGALQCYTRAIQIN-PAFADAHSNLASIHKDSGNIPEAIASYRTALKLK-PDFPDAYCNLAHCLQIVCDW 161 (723)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHTTCC
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCChHHHhhhhhHHHhcccH
Confidence 888999999999999999888864 4567788889999999999999999999988764 55677888899999999999
Q ss_pred HHHHHHHHHHHH
Q 010383 438 HEAVHFLYELVD 449 (512)
Q Consensus 438 ~~a~~~~~~~~~ 449 (512)
++|.+.++++++
T Consensus 162 ~~A~~~~~kal~ 173 (723)
T 4gyw_A 162 TDYDERMKKLVS 173 (723)
T ss_dssp TTHHHHHHHHHH
T ss_pred HHHHHHHHHHHH
Confidence 888888887664
No 85
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.31 E-value=3.3e-11 Score=104.88 Aligned_cols=229 Identities=13% Similarity=0.004 Sum_probs=157.3
Q ss_pred HccCChhhHHHHHHHHHhc-------CCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhC------CCCCCcHHHHHHH
Q 010383 255 CLIKNPTELLNVLVFMLQT-------QCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTI 321 (512)
Q Consensus 255 ~~~~~~~~a~~~~~~~~~~-------~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l 321 (512)
...|++++|...+++..+. ..+....++..+...+...|++++|...+++.... ...+....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 4567788888777776652 22234567888899999999999999999998754 2213456778889
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccC-----C-CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhC------C-CCCChHh
Q 010383 322 IFGLLNVGRIQEALNLLYQVMPQR-----G-YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGI------G-VVADSTT 388 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~-----~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~-~~~~~~~ 388 (512)
...+...|++++|...+.+.+... . .+.....+..+...+...|++++|...+++..+. + .+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 999999999999999999876541 1 1234567788889999999999999999998774 1 1223457
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcC-------CCCC-CHHhHHHHHHHHHhcCCH------HHHHHHHHHHHHCCCCC
Q 010383 389 YAIVIDGLCESNQLDEAKRFWDDIVWP-------SNIH-DNYVYAAMIKGLCRSGKI------HEAVHFLYELVDSGVTP 454 (512)
Q Consensus 389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~-------~~~~-~~~~~~~l~~~~~~~g~~------~~a~~~~~~~~~~~~~p 454 (512)
+..+..+|...|++++|...++++.+. ...+ ....+..+...+...+.. ..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999988642 1122 222334343333333322 222222222111 1122
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 455 NIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
...++..+...|...|++++|.+++++..+
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 280 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASR 280 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 345688899999999999999999999875
No 86
>3edt_B KLC 2, kinesin light chain 2; superhelical, structural genomics, structural genomics conso SGC, microtubule, motor protein, phosphoprotein; 2.70A {Homo sapiens} PDB: 3ceq_A
Probab=99.27 E-value=6.9e-11 Score=102.83 Aligned_cols=230 Identities=15% Similarity=0.084 Sum_probs=160.3
Q ss_pred hccCCHHHHHHHHHHHHh-------CCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhc------CC-CCChhhHHHH
Q 010383 220 CGESDLEKARKVLQFMLS-------KKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQT------QC-QPDVITLNTV 285 (512)
Q Consensus 220 ~~~g~~~~a~~~~~~~~~-------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~-~~~~~~~~~l 285 (512)
...|+++.|...+++..+ ...+.....+..+...+...|++++|...+....+. +. +....++..+
T Consensus 12 ~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~l 91 (283)
T 3edt_B 12 SGLVPRGSAVPLCKQALEDLEKTSGHDHPDVATMLNILALVYRDQNKYKEAAHLLNDALAIREKTLGKDHPAVAATLNNL 91 (283)
T ss_dssp -CCSCSSSHHHHHHHHHHHHHHHHCSSSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHHHHHH
T ss_pred CCCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHcCCcchHHHHHHHHH
Confidence 456777777777766554 222334567888999999999999999999998765 22 2245678889
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhC------CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhccc------CCCCCChhh
Q 010383 286 INGFCKMGRIEEALKVLNDMVAG------KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQ------RGYSPGIVT 353 (512)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~------~~~~~~~~~ 353 (512)
..++...|++++|...+++.... ...+....++..+...+...|++++|...+.+.+.. ...+....+
T Consensus 92 ~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~ 171 (283)
T 3edt_B 92 AVLYGKRGKYKEAEPLCKRALEIREKVLGKFHPDVAKQLNNLALLCQNQGKAEEVEYYYRRALEIYATRLGPDDPNVAKT 171 (283)
T ss_dssp HHHHHTTTCHHHHHHHHHHHHHHHHHHHCTTCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHH
T ss_pred HHHHHHhccHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHH
Confidence 99999999999999999998764 111345678888999999999999999999998754 111223567
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhC-------CCCCCh-HhHHHHHHHHHhcCC------HHHHHHHHHHhhcCCCCC
Q 010383 354 YNAVLRGLFRLRRVEEAKEVFNCMLGI-------GVVADS-TTYAIVIDGLCESNQ------LDEAKRFWDDIVWPSNIH 419 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~-------~~~~~~-~~~~~l~~~~~~~g~------~~~a~~~~~~~~~~~~~~ 419 (512)
+..+...+...|++++|...+++..+. ...+.. ..+..+...+...+. +..+...++.... ..+.
T Consensus 172 ~~~la~~~~~~g~~~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~ 250 (283)
T 3edt_B 172 KNNLASCYLKQGKYQDAETLYKEILTRAHEKEFGSVNGDNKPIWMHAEEREESKDKRRDSAPYGEYGSWYKACKV-DSPT 250 (283)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHHSSSCCSSCCCHHHHHHHHHHTTCCCCC------------CCCC-CCHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhcCCCcchhHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHhcCC-CCHH
Confidence 888899999999999999999998763 112222 234444444433333 2333333333221 1123
Q ss_pred CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 420 DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 420 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
...++..+...|...|++++|...+++.++.
T Consensus 251 ~~~~~~~la~~~~~~g~~~~A~~~~~~al~~ 281 (283)
T 3edt_B 251 VNTTLRSLGALYRRQGKLEAAHTLEDCASRN 281 (283)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHh
Confidence 4557888999999999999999999988753
No 87
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.23 E-value=6.1e-09 Score=88.71 Aligned_cols=179 Identities=9% Similarity=0.065 Sum_probs=91.9
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHH
Q 010383 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCM 377 (512)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 377 (512)
|+..|++....+ .++..++..+..++...|++++|++++.+.+......-+...+..++..+.+.|+.+.|.+.+++|
T Consensus 85 a~~~l~~l~~~~--~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~ 162 (310)
T 3mv2_B 85 NIEELENLLKDK--QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNY 162 (310)
T ss_dssp CCHHHHHTTTTS--CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC--CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHH
Confidence 455555555433 233444445556666666666666666654322211123445555666666666666666666666
Q ss_pred HhCCCCC-----ChHhHHHHHHH--HHhcC--CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 378 LGIGVVA-----DSTTYAIVIDG--LCESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 378 ~~~~~~~-----~~~~~~~l~~~--~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
.+. .| +..+...|..+ ....| ++.+|..+|+++... .|+..+...++.++...|++++|.+.++.+.
T Consensus 163 ~~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 163 TNA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp HHH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred Hhc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 553 34 23344444444 22223 666666666666443 2332222333335666666666666666544
Q ss_pred HCC-----C----CCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 449 DSG-----V----TPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 449 ~~~-----~----~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+.- . +.++.++..++......|+ +|.++++++.+
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~ 281 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVK 281 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHH
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHH
Confidence 320 0 2244455444444444554 56666666665
No 88
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.23 E-value=4.6e-09 Score=91.50 Aligned_cols=150 Identities=9% Similarity=0.005 Sum_probs=84.2
Q ss_pred ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHH
Q 010383 44 EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEV 123 (512)
Q Consensus 44 ~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 123 (512)
++++|...|++. ...+...|++++|...+.+.++..+..++......+|+.+...|...|++++|
T Consensus 32 ~~~~A~~~~~~a---------------~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A 96 (292)
T 1qqe_A 32 KFEEAADLCVQA---------------ATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNA 96 (292)
T ss_dssp HHHHHHHHHHHH---------------HHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred cHHHHHHHHHHH---------------HHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHH
Confidence 477777777776 33466778888888887777665444322222234566666666666666666
Q ss_pred HHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhcc-CchhHHHHHHHHHHh
Q 010383 124 FRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKH-GGCMRAYQLLEEGIQ 202 (512)
Q Consensus 124 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~-~~~~~a~~~~~~~~~ 202 (512)
+..+++... .+...|+...+ ..+++.+...|... |++++|+..|++..+
T Consensus 97 ~~~~~~Al~---------------l~~~~g~~~~~---------------a~~~~~lg~~~~~~lg~~~~A~~~~~~Al~ 146 (292)
T 1qqe_A 97 VDSLENAIQ---------------IFTHRGQFRRG---------------ANFKFELGEILENDLHDYAKAIDCYELAGE 146 (292)
T ss_dssp HHHHHHHHH---------------HHHHTTCHHHH---------------HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHH---------------HHHHcCCHHHH---------------HHHHHHHHHHHHHhhcCHHHHHHHHHHHHH
Confidence 666554322 11111221111 22455566666664 777777777766654
Q ss_pred CCCCC-c----hhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010383 203 FGYLP-S----EHTYKVLVEGLCGESDLEKARKVLQFMLSK 238 (512)
Q Consensus 203 ~~~~~-~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (512)
..... + ..++..+...+...|++++|...|++....
T Consensus 147 ~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 187 (292)
T 1qqe_A 147 WYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKS 187 (292)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT
T ss_pred HHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH
Confidence 31000 0 234556666666666666666666666543
No 89
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.22 E-value=3.5e-08 Score=92.18 Aligned_cols=349 Identities=7% Similarity=-0.088 Sum_probs=195.7
Q ss_pred CChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCC-hhhHHHHHHHHHHc-CCCC-CcchHHHHHHHHh----ccCch
Q 010383 118 GYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR-NHGASRVVYVMRKR-GLTP-SLVSYNSIVHGLC----KHGGC 190 (512)
Q Consensus 118 g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~~~~~~~~~~-g~~p-~~~~~~~l~~~~~----~~~~~ 190 (512)
|+++.+..+|++....- |+...|...+....+.++ .+....+|+..... |..| +...|...+..+. ..++.
T Consensus 28 ~~~e~~~~iferal~~~--ps~~LW~~Y~~f~~~~~~~~~~i~~~fe~al~~vg~d~~s~~iW~~Yi~f~~~~~~~~~~~ 105 (493)
T 2uy1_A 28 KDYRSLESLFGRCLKKS--YNLDLWMLYIEYVRKVSQKKFKLYEVYEFTLGQFENYWDSYGLYKEYIEEEGKIEDEQTRI 105 (493)
T ss_dssp TCHHHHHHHHHHHSTTC--CCHHHHHHHHHHHHHHC----CTHHHHHHHHHHSTTCTTCHHHHHHHHHHTSSCSSHHHHH
T ss_pred CCHHHHHHHHHHHhccC--CCHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHcCCCcccHHHHHHHHHHHHhchhhhHHH
Confidence 55666777777666532 466666666665555542 34455666655542 3322 4456665555443 23456
Q ss_pred hHHHHHHHHHHhCCCCCchhhHHHHHHHHh-------------ccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHcc
Q 010383 191 MRAYQLLEEGIQFGYLPSEHTYKVLVEGLC-------------GESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLI 257 (512)
Q Consensus 191 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~-------------~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 257 (512)
+.+..+|++++......-...|......-. ..+.+..|..+++.+...-...+...|..++..-...
T Consensus 106 ~~vR~iy~rAL~~P~~~~~~lw~~Y~~fE~~~~~~~~~~~~~~~~~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~ 185 (493)
T 2uy1_A 106 EKIRNGYMRALQTPMGSLSELWKDFENFELELNKITGKKIVGDTLPIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMEN 185 (493)
T ss_dssp HHHHHHHHHHHTSCCTTHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhChhhhHHHHHHHHHHHHHHhccccHHHHHHHHhHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcC
Confidence 667777777765321111122221111100 0112333444444333210001222444444432221
Q ss_pred C--C-----hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010383 258 K--N-----PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 258 ~--~-----~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
+ - .+.+..+|+.++...+ .+...|...+..+.+.|+.+.|..++++.... +.+...+.. |....+
T Consensus 186 ~~~~~~~~~~~Rv~~~ye~al~~~p-~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~---P~~~~l~~~----y~~~~e 257 (493)
T 2uy1_A 186 GMKLGGRPHESRMHFIHNYILDSFY-YAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM---SDGMFLSLY----YGLVMD 257 (493)
T ss_dssp TTCCCHHHHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH---CCSSHHHHH----HHHHTT
T ss_pred CccCcchhhHHHHHHHHHHHHHcCC-CCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC---CCcHHHHHH----HHhhcc
Confidence 1 1 2346678888877643 35778888888888899999999999998876 223222222 222111
Q ss_pred HHHHHHHHHhhcccCC-----C---CCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-CC
Q 010383 331 IQEALNLLYQVMPQRG-----Y---SPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQ 401 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~-----~---~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~ 401 (512)
.++..+.+.+...... . ......|...+....+.++.+.|..+|+.. ... +.+...|......-... ++
T Consensus 258 ~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~-~~~~~v~i~~A~lE~~~~~d 335 (493)
T 2uy1_A 258 EEAVYGDLKRKYSMGEAESAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE-GVGPHVFIYCAFIEYYATGS 335 (493)
T ss_dssp CTHHHHHHHHHTC----------CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS-CCCHHHHHHHHHHHHHHHCC
T ss_pred hhHHHHHHHHHHHhhccchhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC-CCChHHHHHHHHHHHHHCCC
Confidence 1111111211110000 0 111245666666666788899999999999 321 23444444323222223 36
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (512)
.+.|..+|+...+.. +.+...+...++.....|+.+.|..+|+++. .....|...+..-...|+.+.+..++++
T Consensus 336 ~~~ar~ife~al~~~-~~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~ 409 (493)
T 2uy1_A 336 RATPYNIFSSGLLKH-PDSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQ 409 (493)
T ss_dssp SHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 999999999998653 3345566777887888999999999999872 2567888888877888999999998888
Q ss_pred HHH
Q 010383 482 MRK 484 (512)
Q Consensus 482 m~~ 484 (512)
+..
T Consensus 410 ~~~ 412 (493)
T 2uy1_A 410 KMD 412 (493)
T ss_dssp HHH
T ss_pred HHH
Confidence 763
No 90
>1qqe_A Vesicular transport protein SEC17; helix-turn-helix TPR-like repeat, protein transport; 2.90A {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=99.20 E-value=3.4e-10 Score=98.68 Aligned_cols=172 Identities=12% Similarity=-0.015 Sum_probs=110.5
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCCC-hhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010383 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHC----GVLPN-SLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 105 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (512)
.|...+..|...|++++|...|++..+. |.+++ ..+|+.+..+|...|++++|...+.+.++..+..++......
T Consensus 39 ~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~lg~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~ 118 (292)
T 1qqe_A 39 LCVQAATIYRLRKELNLAGDSFLKAADYQKKAGNEDEAGNTYVEAYKCFKSGGNSVNAVDSLENAIQIFTHRGQFRRGAN 118 (292)
T ss_dssp HHHHHHHHHHHTTCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHcCCHHHHHH
Confidence 3555567788999999999999988653 21222 457889999999999999999999998877665433332345
Q ss_pred hHHHHHHHHHcc-CChhHHHHHHHhcCCCCCCC-----cchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcc----
Q 010383 106 AFANLVDSLCRE-GYVNEVFRIAEDMPQGKSVN-----EEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLV---- 175 (512)
Q Consensus 106 ~~~~l~~~~~~~-g~~~~a~~~~~~~~~~~~~~-----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~---- 175 (512)
++..+...|... |++++|+..|++.....+.. ...++..+...+...|++++|...|+...+........
T Consensus 119 ~~~~lg~~~~~~lg~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~ 198 (292)
T 1qqe_A 119 FKFELGEILENDLHDYAKAIDCYELAGEWYAQDQSVALSNKCFIKCADLKALDGQYIEASDIYSKLIKSSMGNRLSQWSL 198 (292)
T ss_dssp HHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTSSCTTTGGGH
T ss_pred HHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHhCCChHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHhcCCcccHHH
Confidence 667777777775 77777777776654321100 02345556666666666666666666666543221111
Q ss_pred --hHHHHHHHHhccCchhHHHHHHHHHHh
Q 010383 176 --SYNSIVHGLCKHGGCMRAYQLLEEGIQ 202 (512)
Q Consensus 176 --~~~~l~~~~~~~~~~~~a~~~~~~~~~ 202 (512)
.|..+..++...|++++|...|++..+
T Consensus 199 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~ 227 (292)
T 1qqe_A 199 KDYFLKKGLCQLAATDAVAAARTLQEGQS 227 (292)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHGGGC
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344555556666666666666666554
No 91
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.20 E-value=8e-10 Score=90.90 Aligned_cols=191 Identities=10% Similarity=-0.004 Sum_probs=118.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010383 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (512)
.+......+...|++++|+..|++..... +.+...+... . + .............+..+
T Consensus 6 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~~-----~--------------~-~~~~~~~~~~~~~lg~~ 63 (208)
T 3urz_A 6 EMLQKVSAAIEAGQNGQAVSYFRQTIALN--IDRTEMYYWT-----N--------------V-DKNSEISSKLATELALA 63 (208)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC--HHHHHHHHHH-----H--------------S-CTTSHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHCCCHHHHHHHHHHHHHhC--CCChHHHHHh-----h--------------h-cchhhhhHHHHHHHHHH
Confidence 34445556677788888888888877643 2223322220 0 0 00001112223346777
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC--HH
Q 010383 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK--IH 438 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~ 438 (512)
+.+.|++++|...|++..+.. |.+...+..+..++...|++++|...|+++++.+ +.+..++..+..+|...|+ .+
T Consensus 64 ~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~ 141 (208)
T 3urz_A 64 YKKNRNYDKAYLFYKELLQKA-PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKK 141 (208)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHH
Confidence 788888888888888887754 4566778888888888888888888888887764 5566777777777765543 33
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHH
Q 010383 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILDK 499 (512)
Q Consensus 439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~ 499 (512)
.+...++.... ..|....+.....++...|++++|...|++..+ +.|+......|.+
T Consensus 142 ~~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~--l~P~~~~~~~l~~ 198 (208)
T 3urz_A 142 KLETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVIL--RFPSTEAQKTLDK 198 (208)
T ss_dssp HHHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTT--TSCCHHHHHHHHH
T ss_pred HHHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHH--hCCCHHHHHHHHH
Confidence 44555544432 223333444456666677888888888888876 5677665555543
No 92
>2uy1_A Cleavage stimulation factor 77; RNA-binding protein; 2.0A {Encephalitozoon cuniculi} PDB: 2uy1_B
Probab=99.19 E-value=3.1e-08 Score=92.55 Aligned_cols=385 Identities=7% Similarity=-0.044 Sum_probs=190.8
Q ss_pred ccC-cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC-hhhH
Q 010383 6 GLS-RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD-VERA 83 (512)
Q Consensus 6 ~~g-~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~-~~~a 83 (512)
+.| +++.|+.+|+++.+. -|. |+++.+..+|++.... .|+...|...+....+.++ .+..
T Consensus 6 ~~~~~i~~aR~vyer~l~~--~P~--------------~~~e~~~~iferal~~--~ps~~LW~~Y~~f~~~~~~~~~~i 67 (493)
T 2uy1_A 6 KMGVELSSPSAIMEHARRL--YMS--------------KDYRSLESLFGRCLKK--SYNLDLWMLYIEYVRKVSQKKFKL 67 (493)
T ss_dssp ------CCHHHHHHHHHHH--HHT--------------TCHHHHHHHHHHHSTT--CCCHHHHHHHHHHHHHHC----CT
T ss_pred HcCcchHHHHHHHHHHHHH--CCC--------------CCHHHHHHHHHHHhcc--CCCHHHHHHHHHHHHHhCchHHHH
Confidence 456 488888888888875 333 7899999999999885 5789999888887777663 3445
Q ss_pred HHHHHHHHHHhhhcCCCCcchHhHHHHHHHHH----ccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHH
Q 010383 84 NVLMFKLWERMKEEEDLSVNNAAFANLVDSLC----REGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159 (512)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~----~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 159 (512)
..+|+..+..+.. -..+...|...+..+. ..|+.+.+.++|++........-...|...... ........+.
T Consensus 68 ~~~fe~al~~vg~---d~~s~~iW~~Yi~f~~~~~~~~~~~~~vR~iy~rAL~~P~~~~~~lw~~Y~~f-E~~~~~~~~~ 143 (493)
T 2uy1_A 68 YEVYEFTLGQFEN---YWDSYGLYKEYIEEEGKIEDEQTRIEKIRNGYMRALQTPMGSLSELWKDFENF-ELELNKITGK 143 (493)
T ss_dssp HHHHHHHHHHSTT---CTTCHHHHHHHHHHTSSCSSHHHHHHHHHHHHHHHHTSCCTTHHHHHHHHHHH-HHHHCHHHHH
T ss_pred HHHHHHHHHHcCC---CcccHHHHHHHHHHHHhchhhhHHHHHHHHHHHHHHhChhhhHHHHHHHHHHH-HHHhccccHH
Confidence 5555555544321 1234466666666554 246788899999988763211111122211111 1111111111
Q ss_pred HHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC-------CHHHHHHHH
Q 010383 160 RVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES-------DLEKARKVL 232 (512)
Q Consensus 160 ~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-------~~~~a~~~~ 232 (512)
.++.... +.+..|..+++.+...--..+...|...+..-...+ ..+.+..+|
T Consensus 144 ~~~~~~~---------------------~~y~~ar~~y~~~~~~~~~~s~~~W~~y~~~E~~~~~~~~~~~~~~Rv~~~y 202 (493)
T 2uy1_A 144 KIVGDTL---------------------PIFQSSFQRYQQIQPLIRGWSVKNAARLIDLEMENGMKLGGRPHESRMHFIH 202 (493)
T ss_dssp HHHHHHH---------------------HHHHHHHHHHHHHHHHHHTCSHHHHHHHHHHHHTCTTCCCHHHHHHHHHHHH
T ss_pred HHHHHHh---------------------HHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHhcCCccCcchhhHHHHHHHH
Confidence 1111100 111222222222211000011122322222211110 012234444
Q ss_pred HHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHH-HHHHHHHhhC---
Q 010383 233 QFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEA-LKVLNDMVAG--- 308 (512)
Q Consensus 233 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a-~~~~~~~~~~--- 308 (512)
+++... .+....+|..++..+...|+.+.|..++...... +.+...+.. |....+.++. ..+.+.....
T Consensus 203 e~al~~-~p~~~~lW~~ya~~~~~~~~~~~ar~i~erAi~~--P~~~~l~~~----y~~~~e~~~~~~~l~~~~~~~~~~ 275 (493)
T 2uy1_A 203 NYILDS-FYYAEEVYFFYSEYLIGIGQKEKAKKVVERGIEM--SDGMFLSLY----YGLVMDEEAVYGDLKRKYSMGEAE 275 (493)
T ss_dssp HHHHHH-TTTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--CCSSHHHHH----HHHHTTCTHHHHHHHHHTC-----
T ss_pred HHHHHc-CCCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhC--CCcHHHHHH----HHhhcchhHHHHHHHHHHHhhccc
Confidence 444432 2233444444444444455555555555554444 112111111 1111000011 0111100000
Q ss_pred ----CCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc-cCCHHHHHHHHHHHHhCCCC
Q 010383 309 ----KFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR-LRRVEEAKEVFNCMLGIGVV 383 (512)
Q Consensus 309 ----~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~-~~~~~~a~~~~~~~~~~~~~ 383 (512)
.........|...+....+.++.+.|..+|.+. ... ..+...|......-.. .++.+.|..+|+...+.. +
T Consensus 276 ~~~~~~~~~~~~lw~~y~~~~~r~~~~~~AR~i~~~A-~~~--~~~~~v~i~~A~lE~~~~~d~~~ar~ife~al~~~-~ 351 (493)
T 2uy1_A 276 SAEKVFSKELDLLRINHLNYVLKKRGLELFRKLFIEL-GNE--GVGPHVFIYCAFIEYYATGSRATPYNIFSSGLLKH-P 351 (493)
T ss_dssp -----CHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHH-TTS--CCCHHHHHHHHHHHHHHHCCSHHHHHHHHHHHHHC-T
T ss_pred hhhhhcccccHHHHHHHHHHHHHcCCHHHHHHHHHHh-hCC--CCChHHHHHHHHHHHHHCCChHHHHHHHHHHHHHC-C
Confidence 000112345666666666677888888888876 222 1233334322222222 336888999998887742 3
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.++..+...++.....|+.+.|..+|+++. .....|...+.--...|+.+.+..++++..+
T Consensus 352 ~~~~~~~~yid~e~~~~~~~~aR~l~er~~-----k~~~lw~~~~~fE~~~G~~~~~r~v~~~~~~ 412 (493)
T 2uy1_A 352 DSTLLKEEFFLFLLRIGDEENARALFKRLE-----KTSRMWDSMIEYEFMVGSMELFRELVDQKMD 412 (493)
T ss_dssp TCHHHHHHHHHHHHHHTCHHHHHHHHHHSC-----CBHHHHHHHHHHHHHHSCHHHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHcCCHHHHHHHHHHHH-----HHHHHHHHHHHHHHHCCCHHHHHHHHHHHHH
Confidence 344455666777778888899999999873 2566788887777777898888888877764
No 93
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.19 E-value=1.1e-09 Score=83.08 Aligned_cols=129 Identities=10% Similarity=0.154 Sum_probs=97.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010383 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (512)
.+..+...+...|++++|..+++++.+.. +.+...+..+...+...|++++|...++++...+ +.+...+..+...+.
T Consensus 3 ~~~~l~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 3 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCcHHHHHHHHHHHHHcC-CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 45566677777788888888888777653 4456677777777888888888888888877654 455667777888888
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 433 RSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 433 ~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
..|++++|.+.++++.+.. +.+...+..+...+...|++++|.+.++++.+
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~ 131 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALE 131 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHc
Confidence 8888888888888887754 33566777788888888888888888888776
No 94
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.17 E-value=1.9e-09 Score=92.46 Aligned_cols=101 Identities=9% Similarity=0.009 Sum_probs=60.9
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc---HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhh
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD---AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVT 353 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~ 353 (512)
+...+..+...+.+.|++++|+..|+++.... +.+ ...+..+..++...|++++|+..|.+.+....-.|. ...
T Consensus 14 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~--p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 14 SPQEAFERAMEFYNQGKYDRAIEYFKAVFTYG--RTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp SHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGC--SCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC--CCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 44455555666666777777777777766543 222 455666666677777777777777666544322222 334
Q ss_pred HHHHHHHHHc--------cCCHHHHHHHHHHHHhC
Q 010383 354 YNAVLRGLFR--------LRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 354 ~~~l~~~~~~--------~~~~~~a~~~~~~~~~~ 380 (512)
+..+..++.. .|++++|...|+++.+.
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~ 126 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDR 126 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHH
Confidence 4555555655 67777777777776664
No 95
>3qky_A Outer membrane assembly lipoprotein YFIO; membrane protein; 2.15A {Rhodothermus marinus}
Probab=99.15 E-value=2.4e-09 Score=91.78 Aligned_cols=177 Identities=9% Similarity=-0.033 Sum_probs=138.6
Q ss_pred CCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC-hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCC--CCChHh
Q 010383 312 APDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG-IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV--VADSTT 388 (512)
Q Consensus 312 ~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~--~~~~~~ 388 (512)
+.+...+......+.+.|++++|...|.+.+....-.|. ...+..+..++.+.|++++|...|+++.+... +.....
T Consensus 12 ~~~~~~~~~~a~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a 91 (261)
T 3qky_A 12 HSSPQEAFERAMEFYNQGKYDRAIEYFKAVFTYGRTHEWAADAQFYLARAYYQNKEYLLAASEYERFIQIYQIDPRVPQA 91 (261)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHGGGCSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHH
T ss_pred CCCHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhCCCCcchHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHCCCCchhHHH
Confidence 456777888888999999999999999998765422222 56778888999999999999999999998531 122456
Q ss_pred HHHHHHHHHh--------cCCHHHHHHHHHHhhcCCCCCCHHhH-----------------HHHHHHHHhcCCHHHHHHH
Q 010383 389 YAIVIDGLCE--------SNQLDEAKRFWDDIVWPSNIHDNYVY-----------------AAMIKGLCRSGKIHEAVHF 443 (512)
Q Consensus 389 ~~~l~~~~~~--------~g~~~~a~~~~~~~~~~~~~~~~~~~-----------------~~l~~~~~~~g~~~~a~~~ 443 (512)
+..+..++.. .|++++|...|+++++.. +.+.... ..+...|...|++++|+..
T Consensus 92 ~~~lg~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~ 170 (261)
T 3qky_A 92 EYERAMCYYKLSPPYELDQTDTRKAIEAFQLFIDRY-PNHELVDDATQKIRELRAKLARKQYEAARLYERRELYEAAAVT 170 (261)
T ss_dssp HHHHHHHHHHHCCCTTSCCHHHHHHHHHHHHHHHHC-TTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHH
T ss_pred HHHHHHHHHHhcccccccchhHHHHHHHHHHHHHHC-cCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCHHHHHHH
Confidence 7778888888 999999999999998754 3233333 5568889999999999999
Q ss_pred HHHHHHCCCCC--ChhhHHHHHHHHHhc----------CCHHHHHHHHHHHHHCCCCCCh
Q 010383 444 LYELVDSGVTP--NIVCYNVVIDGACKL----------SMKREAYQILREMRKNGLNPDA 491 (512)
Q Consensus 444 ~~~~~~~~~~p--~~~~~~~l~~~~~~~----------g~~~~a~~~~~~m~~~~~~p~~ 491 (512)
|+++++..+.. ....+..+..++... |++++|...++++.+. .|+.
T Consensus 171 ~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~~~~~~~~~~~A~~~~~~~~~~--~p~~ 228 (261)
T 3qky_A 171 YEAVFDAYPDTPWADDALVGAMRAYIAYAEQSVRARQPERYRRAVELYERLLQI--FPDS 228 (261)
T ss_dssp HHHHHHHCTTSTTHHHHHHHHHHHHHHHHHTSCGGGHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred HHHHHHHCCCCchHHHHHHHHHHHHHHhcccchhhcccchHHHHHHHHHHHHHH--CCCC
Confidence 99998864322 245677888888866 8999999999999874 4654
No 96
>3mv2_B Coatomer subunit epsilon; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_B
Probab=99.14 E-value=1.4e-08 Score=86.53 Aligned_cols=180 Identities=10% Similarity=0.028 Sum_probs=109.2
Q ss_pred HHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010383 263 LLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342 (512)
Q Consensus 263 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 342 (512)
++..+++..+.+ .++...+..+..++...|++++|++++.+....+....+...+..++..+.+.|+.+.|.+.+.++.
T Consensus 85 a~~~l~~l~~~~-~~~~~~~~~la~i~~~~g~~eeAL~~l~~~i~~~~~~~~lea~~l~vqi~L~~~r~d~A~k~l~~~~ 163 (310)
T 3mv2_B 85 NIEELENLLKDK-QNSPYELYLLATAQAILGDLDKSLETCVEGIDNDEAEGTTELLLLAIEVALLNNNVSTASTIFDNYT 163 (310)
T ss_dssp CCHHHHHTTTTS-CCCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTSSCSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcC-CCCcHHHHHHHHHHHHcCCHHHHHHHHHHHhccCCCcCcHHHHHHHHHHHHHCCCHHHHHHHHHHHH
Confidence 344455444443 3344445566677777788888888877775544112466667777777778888888887777643
Q ss_pred ccCCCCC-----ChhhHHHHHHHH--HccC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhh
Q 010383 343 PQRGYSP-----GIVTYNAVLRGL--FRLR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIV 413 (512)
Q Consensus 343 ~~~~~~~-----~~~~~~~l~~~~--~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 413 (512)
.. .| +..+...+..++ ...| ++..|..+|+++.+. .|+..+...++.++.+.|++++|.+.++.+.
T Consensus 164 -~~--~~d~~~~~d~~l~~Laea~v~l~~g~~~~q~A~~~f~El~~~--~p~~~~~~lLln~~~~~g~~~eAe~~L~~l~ 238 (310)
T 3mv2_B 164 -NA--IEDTVSGDNEMILNLAESYIKFATNKETATSNFYYYEELSQT--FPTWKTQLGLLNLHLQQRNIAEAQGIVELLL 238 (310)
T ss_dssp -HH--SCHHHHHHHHHHHHHHHHHHHHHHTCSTTTHHHHHHHHHHTT--SCSHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred -hc--CccccccchHHHHHHHHHHHHHHhCCccHHHHHHHHHHHHHh--CCCcccHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 22 44 234444555442 2223 777888888887654 3443333444447777888888888887655
Q ss_pred cCC---------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 414 WPS---------NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 414 ~~~---------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+.. .+.|..++..++......|+ +|.+++.++.+.
T Consensus 239 ~~~p~~~~k~~~~p~~~~~LaN~i~l~~~lgk--~a~~l~~qL~~~ 282 (310)
T 3mv2_B 239 SDYYSVEQKENAVLYKPTFLANQITLALMQGL--DTEDLTNQLVKL 282 (310)
T ss_dssp SHHHHTTTCHHHHSSHHHHHHHHHHHHHHTTC--TTHHHHHHHHHT
T ss_pred HhcccccccccCCCCCHHHHHHHHHHHHHhCh--HHHHHHHHHHHh
Confidence 420 13455566455555555665 777788887775
No 97
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.13 E-value=2.9e-10 Score=87.87 Aligned_cols=144 Identities=13% Similarity=0.020 Sum_probs=100.3
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 010383 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 438 (512)
..+...|++++|+..++...... +.+...+..+...|.+.|++++|.+.|+++++.. +.+..+|..+..+|...|+++
T Consensus 5 ~~~~~~~~~e~ai~~~~~a~~~~-p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~~~ 82 (150)
T 4ga2_A 5 SMRRSKADVERYIASVQGSTPSP-RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEENTD 82 (150)
T ss_dssp --CCCHHHHHHHHHHHHHHSCSH-HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHcChHHHHHHHHHHhcccC-cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCchH
Confidence 34455667777777777766532 2234456667788888888888888888887664 556778888888888888888
Q ss_pred HHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCC-ChHHHHHHHHhhccCCCC
Q 010383 439 EAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQI-LREMRKNGLNP-DAVTWRILDKLHGNRGND 507 (512)
Q Consensus 439 ~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~-~~~m~~~~~~p-~~~~~~~l~~~~~~~g~~ 507 (512)
+|...|++.++..+ -+...|..+...+.+.|++++|.+. +++..+ +.| +...|....+++...|++
T Consensus 83 ~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~--l~P~~~~~~~l~~~ll~~~G~d 150 (150)
T 4ga2_A 83 KAVECYRRSVELNP-TQKDLVLKIAELLCKNDVTDGRAKYWVERAAK--LFPGSPAVYKLKEQLLDCEGED 150 (150)
T ss_dssp HHHHHHHHHHHHCT-TCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHH--HSTTCHHHHHHHHHHHHTCCCC
T ss_pred HHHHHHHHHHHhCC-CCHHHHHHHHHHHHHcCChHHHHHHHHHHHHH--hCcCCHHHHHHHHHHHHHhCcC
Confidence 88888888877642 2567778888888888887765554 577766 345 455666666777777654
No 98
>3urz_A Uncharacterized protein; tetratricopeptide repeats (TPR) containing protein, structur genomics, joint center for structural genomics, JCSG; HET: PG4; 2.19A {Bacteroides ovatus}
Probab=99.13 E-value=3.2e-09 Score=87.26 Aligned_cols=184 Identities=5% Similarity=-0.032 Sum_probs=108.7
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
+......+...|++++|...|+...+..+. +...+.. ... .. . ..........+..++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p~-~~~~~~~-----~~~-------------~~-~-~~~~~~~~~~lg~~~~ 65 (208)
T 3urz_A 7 MLQKVSAAIEAGQNGQAVSYFRQTIALNID-RTEMYYW-----TNV-------------DK-N-SEISSKLATELALAYK 65 (208)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCHH-HHHHHHH-----HHS-------------CT-T-SHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHHHhCCC-ChHHHHH-----hhh-------------cc-h-hhhhHHHHHHHHHHHH
Confidence 344556778899999999999999876432 2222222 000 00 0 0112233344666677
Q ss_pred hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC--HHH
Q 010383 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ--LDE 404 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~ 404 (512)
..|++++|+..|.+.+... +.+...+..+..++...|++++|...|++..+.. |.+...+..+..+|...|. .+.
T Consensus 66 ~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~~~~~~~~ 142 (208)
T 3urz_A 66 KNRNYDKAYLFYKELLQKA--PNNVDCLEACAEMQVCRGQEKDALRMYEKILQLE-ADNLAANIFLGNYYYLTAEQEKKK 142 (208)
T ss_dssp HTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHHHC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHHhHHHHHH
Confidence 7777777777777766443 3455667777777777777777777777777753 4456667777766655443 334
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhh
Q 010383 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVC 458 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~ 458 (512)
+...++.... ..|....+..+..++...|++++|...|++.++. .|+...
T Consensus 143 ~~~~~~~~~~--~~~~~~a~~~~g~~~~~~~~~~~A~~~~~~al~l--~P~~~~ 192 (208)
T 3urz_A 143 LETDYKKLSS--PTKMQYARYRDGLSKLFTTRYEKARNSLQKVILR--FPSTEA 192 (208)
T ss_dssp HHHHHC---C--CCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTT--SCCHHH
T ss_pred HHHHHHHHhC--CCchhHHHHHHHHHHHHccCHHHHHHHHHHHHHh--CCCHHH
Confidence 4455554432 1222333444555666677888888888877765 455443
No 99
>2fo7_A Synthetic consensus TPR protein; tetratricopeptide repeat, consensus protein, superhelix, de novo protein; 2.30A {Synthetic} SCOP: k.38.1.1 PDB: 2hyz_A
Probab=99.11 E-value=4.6e-09 Score=79.55 Aligned_cols=129 Identities=10% Similarity=0.183 Sum_probs=75.6
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010383 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397 (512)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (512)
+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...++++.+.+ +.+...+..+...+.
T Consensus 4 ~~~l~~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 80 (136)
T 2fo7_A 4 WYNLGNAYYKQGDYDEAIEYYQKALELD--PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYY 80 (136)
T ss_dssp HHHHHHHHHHHTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCcHHHHHHHHHHHHHcC--CcchhHHHHHHHHHHHhcCHHHHHHHHHHHHHHC-CCchHHHHHHHHHHH
Confidence 3444555555555555555555544322 2234445555555566666666666666665543 334455666666666
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
..|++++|...++++.+.. +.+...+..++..+...|++++|...++++.+.
T Consensus 81 ~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~ 132 (136)
T 2fo7_A 81 KQGDYDEAIEYYQKALELD-PRSAEAWYNLGNAYYKQGDYDEAIEYYQKALEL 132 (136)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHHccHHHHHHHHHHHHcc
Confidence 6677777777666665543 344556666677777777777777777766654
No 100
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.10 E-value=1.3e-09 Score=106.77 Aligned_cols=173 Identities=10% Similarity=-0.032 Sum_probs=129.2
Q ss_pred HhcCCHHHHHHHHHHHh--------hCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHH
Q 010383 290 CKMGRIEEALKVLNDMV--------AGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGL 361 (512)
Q Consensus 290 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~ 361 (512)
...|++++|++.+++.. +.. +.+...+..+...+...|++++|+..|++.+... +.+...+..+..++
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~--p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~ 477 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF--SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAE 477 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC--TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc--ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHH
Confidence 66788888888888887 433 4566777778888888888888888888876544 44566777788888
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHH
Q 010383 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAV 441 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 441 (512)
...|++++|...|++..+.. +.+...+..+..+|...|++++ ...|+++++.+ +.+...+..+..++...|++++|.
T Consensus 478 ~~~g~~~~A~~~~~~al~l~-P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 478 LLTGDYDSATKHFTEVLDTF-PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHHTCHHHHHHHHHHHHHHS-TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHcCCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 88888888888888888754 4466778888888888888888 88888887664 556778888888888888888888
Q ss_pred HHHHHHHHCCCCC-ChhhHHHHHHHHHhcCC
Q 010383 442 HFLYELVDSGVTP-NIVCYNVVIDGACKLSM 471 (512)
Q Consensus 442 ~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~ 471 (512)
+.|++..+.+ | +...+..+..++...|+
T Consensus 555 ~~~~~al~l~--P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTS--RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTS--TTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccC--cccHHHHHHHHHHHHccCC
Confidence 8888877653 3 35566667777655444
No 101
>4ga2_A E3 SUMO-protein ligase ranbp2; TPR motif, nuclear pore complex component nucleocytoplasmic transport, transport protein; 0.95A {Pan troglodytes} PDB: 4ga0_A 4ga1_A*
Probab=99.07 E-value=8e-10 Score=85.37 Aligned_cols=145 Identities=7% Similarity=-0.046 Sum_probs=94.9
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010383 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (512)
...+...|++++|+..+.+..... +.+...+..+...|.+.|++++|+..|++..+.. +.+..+|..+..+|...|+
T Consensus 4 G~~~~~~~~~e~ai~~~~~a~~~~--p~~~~~~~~la~~y~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~~~ 80 (150)
T 4ga2_A 4 GSMRRSKADVERYIASVQGSTPSP--RQKSIKGFYFAKLYYEAKEYDLAKKYICTYINVQ-ERDPKAHRFLGLLYELEEN 80 (150)
T ss_dssp ---CCCHHHHHHHHHHHHHHSCSH--HHHHTTHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHcChHHHHHHHHHHhcccC--cccHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCc
Confidence 344455667777777776654321 2234455567777777888888888888777754 4566677778888888888
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHH-HHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010383 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHF-LYELVDSGVTPNIVCYNVVIDGACKLSM 471 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~-~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 471 (512)
+++|...|+++++.+ +.+..++..+...|.+.|++++|.+. +++.++..+ -++..|......+...|+
T Consensus 81 ~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~~~~~~aa~~~~~~al~l~P-~~~~~~~l~~~ll~~~G~ 149 (150)
T 4ga2_A 81 TDKAVECYRRSVELN-PTQKDLVLKIAELLCKNDVTDGRAKYWVERAAKLFP-GSPAVYKLKEQLLDCEGE 149 (150)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHCSSSSHHHHHHHHHHHHST-TCHHHHHHHHHHHHTCCC
T ss_pred hHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCChHHHHHHHHHHHHHhCc-CCHHHHHHHHHHHHHhCc
Confidence 888888888877654 45666777777788888877665554 466666532 255666666666655553
No 102
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=99.06 E-value=2.9e-09 Score=84.96 Aligned_cols=78 Identities=9% Similarity=0.068 Sum_probs=46.6
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC-ChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP-NIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
|...+++.++.. +.+...+..+..++...|++++|...|+++++..+.+ +...+..+...+...|+.++|...|++..
T Consensus 93 a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~~A~~~y~~al 171 (176)
T 2r5s_A 93 ELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGNAIASKYRRQL 171 (176)
T ss_dssp HHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCCcHHHHHHHHH
Confidence 455555555433 3345566666666666666666666666666654332 23456666666666666666666666554
No 103
>2pzi_A Probable serine/threonine-protein kinase PKNG; ATP-recognition, kinase-INH complex, rubredoxin fold, TPR domain, transferase; HET: AXX; 2.40A {Mycobacterium tuberculosis}
Probab=99.05 E-value=3.7e-09 Score=103.56 Aligned_cols=174 Identities=11% Similarity=0.017 Sum_probs=143.0
Q ss_pred HccCChhhHHHHHHHHH--------hcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010383 255 CLIKNPTELLNVLVFML--------QTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 255 ~~~~~~~~a~~~~~~~~--------~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
...+++++|+..++... +.. +.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++.
T Consensus 402 ~~~~~~~~A~~~~~~al~~~~~~~~~~~-p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~ 478 (681)
T 2pzi_A 402 TVLSQPVQTLDSLRAARHGALDADGVDF-SESVELPLMEVRALLDLGDVAKATRKLDDLAERV--GWRWRLVWYRAVAEL 478 (681)
T ss_dssp TTTCCHHHHHHHHHHHHTC-------CC-TTCSHHHHHHHHHHHHHTCHHHHHHHHHHHHHHH--CCCHHHHHHHHHHHH
T ss_pred ccccCHHHHHHHHHHhhhhccccccccc-ccchhHHHHHHHHHHhcCCHHHHHHHHHHHhccC--cchHHHHHHHHHHHH
Confidence 77889999999999887 333 3356778888899999999999999999998765 678889999999999
Q ss_pred hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010383 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 406 (512)
..|++++|...|++.+... +.+...+..+..++.+.|++++ ...|++..+.. +.+...+..+..++...|++++|.
T Consensus 479 ~~g~~~~A~~~~~~al~l~--P~~~~~~~~lg~~~~~~g~~~~-~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~ 554 (681)
T 2pzi_A 479 LTGDYDSATKHFTEVLDTF--PGELAPKLALAATAELAGNTDE-HKFYQTVWSTN-DGVISAAFGLARARSAEGDRVGAV 554 (681)
T ss_dssp HHTCHHHHHHHHHHHHHHS--TTCSHHHHHHHHHHHHHTCCCT-TCHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCChHH-HHHHHHHHHhC-CchHHHHHHHHHHHHHcCCHHHHH
Confidence 9999999999999987655 4456778889999999999999 99999998864 556778999999999999999999
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHhcCC
Q 010383 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRSGK 436 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 436 (512)
..|+++.+.+ +.+...+..+..++...++
T Consensus 555 ~~~~~al~l~-P~~~~a~~~~~~~~~~~~~ 583 (681)
T 2pzi_A 555 RTLDEVPPTS-RHFTTARLTSAVTLLSGRS 583 (681)
T ss_dssp HHHHTSCTTS-TTHHHHHHHHHHHTC----
T ss_pred HHHHhhcccC-cccHHHHHHHHHHHHccCC
Confidence 9999998754 4456677778888766554
No 104
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=99.05 E-value=2.2e-08 Score=83.50 Aligned_cols=189 Identities=9% Similarity=0.005 Sum_probs=118.8
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC-cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh-hhHH
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAP-DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI-VTYN 355 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~-~~~~ 355 (512)
+...+..+...+.+.|++++|+..|+++.......+ ....+..+..++.+.|++++|+..|.+.+...+-.+.. ..+.
T Consensus 3 ~~~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~ 82 (225)
T 2yhc_A 3 PPNEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMY 82 (225)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHH
Confidence 344566667778888999999999999887542112 24567778888999999999999998877554322221 1333
Q ss_pred HHHHHHHc------------------cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC
Q 010383 356 AVLRGLFR------------------LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN 417 (512)
Q Consensus 356 ~l~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~ 417 (512)
.+..++.. .|++++|...|+++.+.. |-+........... .+....
T Consensus 83 ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~-P~~~~a~~a~~~l~----------~~~~~~----- 146 (225)
T 2yhc_A 83 MRGLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY-PNSQYTTDATKRLV----------FLKDRL----- 146 (225)
T ss_dssp HHHHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC-TTCTTHHHHHHHHH----------HHHHHH-----
T ss_pred HHHHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC-cCChhHHHHHHHHH----------HHHHHH-----
Confidence 44444433 345555555555555532 11222211111000 000000
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
......+...|.+.|++++|+..|+++++..+... ...+..+..++.+.|++++|.+.++.+...
T Consensus 147 ---~~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~ 213 (225)
T 2yhc_A 147 ---AKYEYSVAEYYTERGAWVAVVNRVEGMLRDYPDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAAN 213 (225)
T ss_dssp ---HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHSTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHC
T ss_pred ---HHHHHHHHHHHHHcCcHHHHHHHHHHHHHHCcCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhh
Confidence 00113456778899999999999999988632211 256888899999999999999999988874
No 105
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=99.04 E-value=3.4e-08 Score=81.29 Aligned_cols=175 Identities=10% Similarity=-0.054 Sum_probs=100.9
Q ss_pred HHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC----CHHHHHHH
Q 010383 298 ALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR----RVEEAKEV 373 (512)
Q Consensus 298 a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 373 (512)
|++.|++..+. .+...+..+...+...+++++|+.+|.+.... -++..+..+...|.. + ++++|...
T Consensus 5 A~~~~~~aa~~----g~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~----g~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 5 PGSQYQQQAEA----GDRRAQYYLADTWVSSGDYQKAEYWAQKAAAQ----GDGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp TTHHHHHHHHT----TCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHT----TCHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred HHHHHHHHHHC----CCHHHHHHHHHHHhcCCCHHHHHHHHHHHHHc----CCHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 44445554442 24444555555555556666666666554422 134444455555554 4 56666666
Q ss_pred HHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCC-CCHHhHHHHHHHHHh----cCCHHHHHHHH
Q 010383 374 FNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCR----SGKIHEAVHFL 444 (512)
Q Consensus 374 ~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~~ 444 (512)
|++..+.| +...+..|...|.. .+++++|...|++..+.+.. .+...+..|...|.. .+++++|...|
T Consensus 76 ~~~A~~~g---~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~ 152 (212)
T 3rjv_A 76 AEKAVEAG---SKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEYF 152 (212)
T ss_dssp HHHHHHTT---CHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHHH
T ss_pred HHHHHHCC---CHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHHH
Confidence 66665543 44555566666655 56777777777777654411 124566666666666 66777777777
Q ss_pred HHHHHCCCCCChhhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 010383 445 YELVDSGVTPNIVCYNVVIDGACKL-S-----MKREAYQILREMRKNG 486 (512)
Q Consensus 445 ~~~~~~~~~p~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~m~~~~ 486 (512)
++..+. ..+...+..|...|... | ++++|..++++..+.|
T Consensus 153 ~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 153 KGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 777665 22344555666666543 2 6777777777777766
No 106
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.03 E-value=1e-08 Score=88.94 Aligned_cols=164 Identities=10% Similarity=-0.009 Sum_probs=85.7
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHH-
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNA- 356 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~- 356 (512)
+...+..+...+...|++++|...|++..... +.+...+..+...+...|++++|...+.+.... .|+......
T Consensus 116 ~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l~~~~~~---~p~~~~~~~~ 190 (287)
T 3qou_A 116 EEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVLXTIPLQ---DQDTRYQGLV 190 (287)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHHTTSCGG---GCSHHHHHHH
T ss_pred chhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHHHhCchh---hcchHHHHHH
Confidence 34445555566666666666666666666554 445566666666666666666666666654322 233222111
Q ss_pred HHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCC-CCHHhHHHHHHHHHhcC
Q 010383 357 VLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNI-HDNYVYAAMIKGLCRSG 435 (512)
Q Consensus 357 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g 435 (512)
....+...++.+.|...+++..+.. +.+...+..+...+...|++++|...++++++.... .+...+..++..+...|
T Consensus 191 ~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~~~~~~a~~~l~~~~~~~g 269 (287)
T 3qou_A 191 AQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLTAADGQTRXTFQEILAALG 269 (287)
T ss_dssp HHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTGGGGHHHHHHHHHHHHHC
T ss_pred HHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccccccchHHHHHHHHHHHcC
Confidence 1122334445555555555555542 334445555555555555555555555555543211 11344555555555555
Q ss_pred CHHHHHHHHHHH
Q 010383 436 KIHEAVHFLYEL 447 (512)
Q Consensus 436 ~~~~a~~~~~~~ 447 (512)
+.++|...+++.
T Consensus 270 ~~~~a~~~~r~a 281 (287)
T 3qou_A 270 TGDALASXYRRQ 281 (287)
T ss_dssp TTCHHHHHHHHH
T ss_pred CCCcHHHHHHHH
Confidence 555555555443
No 107
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=99.03 E-value=1.8e-07 Score=80.68 Aligned_cols=233 Identities=7% Similarity=0.038 Sum_probs=154.7
Q ss_pred hhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC--CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHH----hhc---CC
Q 010383 260 PTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG--RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGL----LNV---GR 330 (512)
Q Consensus 260 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~ 330 (512)
.++|+..+..++..++. +...|+.--.++...| ++++++..++.+.... +.+..+|+.-...+ ... ++
T Consensus 49 s~~aL~~t~~~L~~nP~-~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~n--Pk~y~aW~~R~~iL~~~~~~l~~~~~ 125 (306)
T 3dra_A 49 SERALHITELGINELAS-HYTIWIYRFNILKNLPNRNLYDELDWCEEIALDN--EKNYQIWNYRQLIIGQIMELNNNDFD 125 (306)
T ss_dssp SHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHHC--TTCCHHHHHHHHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHHHCcH-HHHHHHHHHHHHHHcccccHHHHHHHHHHHHHHC--cccHHHHHHHHHHHHHHHHhccccCC
Confidence 34666666666665433 4555666666666667 7888888888877665 44455555443333 333 67
Q ss_pred HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHH--HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC------H
Q 010383 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------L 402 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------~ 402 (512)
+++++..+.+++... +-+...|+.-.-.+.+.|.++ +++..++++.+.. +-|...|+.-..++...+. +
T Consensus 126 ~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~~~~~i~~d-~~N~sAW~~R~~ll~~l~~~~~~~~~ 202 (306)
T 3dra_A 126 PYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSFVDKVIDTD-LKNNSAWSHRFFLLFSKKHLATDNTI 202 (306)
T ss_dssp THHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHSSGGGCCHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccchhhhH
Confidence 788888887776554 445666666555566667776 8888888888764 4566677766666666665 7
Q ss_pred HHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH-HHHHHHHHHHCC--CCCChhhHHHHHHHHHhcCCHHHHHHHH
Q 010383 403 DEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE-AVHFLYELVDSG--VTPNIVCYNVVIDGACKLSMKREAYQIL 479 (512)
Q Consensus 403 ~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~-a~~~~~~~~~~~--~~p~~~~~~~l~~~~~~~g~~~~a~~~~ 479 (512)
+++.+.+++++..+ +.|...|+.+...+.+.|+..+ +..+..++.+.+ -..+...+..++..+.+.|+.++|.+++
T Consensus 203 ~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~ 281 (306)
T 3dra_A 203 DEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSLQFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVY 281 (306)
T ss_dssp HHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHHTTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHHHHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHH
Confidence 88888888887665 6677888888888877776443 555666655432 1235677888888888888888899998
Q ss_pred HHHHHCCCCC-ChHHHHHHHHh
Q 010383 480 REMRKNGLNP-DAVTWRILDKL 500 (512)
Q Consensus 480 ~~m~~~~~~p-~~~~~~~l~~~ 500 (512)
+.+.+. +.| ....|....+.
T Consensus 282 ~~l~~~-~Dpir~~yW~~~~~~ 302 (306)
T 3dra_A 282 DLLKSK-YNPIRSNFWDYQISK 302 (306)
T ss_dssp HHHHHT-TCGGGHHHHHHHHHT
T ss_pred HHHHhc-cChHHHHHHHHHHhh
Confidence 888753 334 34455554443
No 108
>3qou_A Protein YBBN; thioredoxin-like fold, tetratricopeptide repeat, lysine dimethylation, protein binding; HET: MLY; 1.80A {Escherichia coli} PDB: 3qdn_A*
Probab=99.02 E-value=1.6e-08 Score=87.70 Aligned_cols=180 Identities=14% Similarity=0.085 Sum_probs=143.2
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHH
Q 010383 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVF 374 (512)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 374 (512)
.+.....+.... +.+...+..+...+...|++++|...|++.+... +.+...+..+...+...|++++|...+
T Consensus 102 ~~~l~~~l~~~l-----p~~~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~l 174 (287)
T 3qou_A 102 EEAIRALLDXVL-----PREEELXAQQAMQLMQESNYTDALPLLXDAWQLS--NQNGEIGLLLAETLIALNRSEDAEAVL 174 (287)
T ss_dssp HHHHHHHHHHHS-----CCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT--TSCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHc-----CCchhhHHHHHHHHHhCCCHHHHHHHHHHHHHhC--CcchhHHHHHHHHHHHCCCHHHHHHHH
Confidence 344445555543 4566777888889999999999999999987665 456678888999999999999999999
Q ss_pred HHHHhCCCCCChHhH-HHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC
Q 010383 375 NCMLGIGVVADSTTY-AIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT 453 (512)
Q Consensus 375 ~~~~~~~~~~~~~~~-~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~ 453 (512)
+++.... |+.... ......+...++.+.|...+++..... +.+...+..+...+...|++++|...+.++++..+.
T Consensus 175 ~~~~~~~--p~~~~~~~~~~~~l~~~~~~~~a~~~l~~al~~~-P~~~~~~~~la~~l~~~g~~~~A~~~l~~~l~~~p~ 251 (287)
T 3qou_A 175 XTIPLQD--QDTRYQGLVAQIELLXQAADTPEIQQLQQQVAEN-PEDAALATQLALQLHQVGRNEEALELLFGHLRXDLT 251 (287)
T ss_dssp TTSCGGG--CSHHHHHHHHHHHHHHHHTSCHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT
T ss_pred HhCchhh--cchHHHHHHHHHHHHhhcccCccHHHHHHHHhcC-CccHHHHHHHHHHHHHcccHHHHHHHHHHHHhcccc
Confidence 9987753 454433 233344667788888999999988765 677889999999999999999999999999987533
Q ss_pred C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 454 P-NIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 454 p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
. +...+..++..+...|+.++|...+++...
T Consensus 252 ~~~~~a~~~l~~~~~~~g~~~~a~~~~r~al~ 283 (287)
T 3qou_A 252 AADGQTRXTFQEILAALGTGDALASXYRRQLY 283 (287)
T ss_dssp GGGGHHHHHHHHHHHHHCTTCHHHHHHHHHHH
T ss_pred cccchHHHHHHHHHHHcCCCCcHHHHHHHHHH
Confidence 2 266899999999999999999998887653
No 109
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=99.01 E-value=6.6e-09 Score=91.25 Aligned_cols=160 Identities=9% Similarity=0.006 Sum_probs=80.7
Q ss_pred ccCcHHHHHHHHHHHHhCCC------CCChH----hHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CC----hhhHHHH
Q 010383 6 GLSRVGEAHKLFFDMKSRGH------VPNVV----SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL-PN----SLTYSVL 70 (512)
Q Consensus 6 ~~g~~~~A~~~~~~~~~~~~------~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~----~~~~~~l 70 (512)
..|++++|.+++++..+... .++.. .|+.....|...|++++|...|.+..+.... .+ ..+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 46889999999987765311 12211 4555556666666666666666665432100 01 2245555
Q ss_pred HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCC---C--cchhHHHH
Q 010383 71 VRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSV---N--EEFACGHM 145 (512)
Q Consensus 71 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~---~--~~~~~~~l 145 (512)
...|...|++++|...+.+.++..+...+......++..+...|.. |++++|+..|++....... + ...++..+
T Consensus 83 g~~~~~~g~~~~A~~~~~~Al~l~~~~g~~~~~a~~~~~lg~~~~~-g~~~~A~~~~~~Al~~~~~~~~~~~~~~~~~~l 161 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEKASVMYVENGTPDTAAMALDRAGKLMEP-LDLSKAVHLYQQAAAVFENEERLRQAAELIGKA 161 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHTT-TCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHc-CCHHHHHHHHHHHHHHHHhCCChhHHHHHHHHH
Confidence 5666666666666666666555443322222223344555555555 5555555555543321100 0 01234444
Q ss_pred HHHHHhcCChhhHHHHHHHHH
Q 010383 146 IDSLCRSGRNHGASRVVYVMR 166 (512)
Q Consensus 146 ~~~~~~~~~~~~a~~~~~~~~ 166 (512)
..++...|++++|...|++..
T Consensus 162 g~~~~~~g~~~~A~~~~~~al 182 (307)
T 2ifu_A 162 SRLLVRQQKFDEAAASLQKEK 182 (307)
T ss_dssp HHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHH
Confidence 444455555555555544443
No 110
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=99.00 E-value=1.1e-08 Score=98.53 Aligned_cols=154 Identities=12% Similarity=0.038 Sum_probs=112.4
Q ss_pred cCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHH
Q 010383 292 MGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAK 371 (512)
Q Consensus 292 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 371 (512)
.|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++.+... +.+...+..+...+...|++++|.
T Consensus 2 ~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~ 77 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHR--PQDFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAA 77 (568)
T ss_dssp ---------------------CCHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHH
T ss_pred CccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHH
Confidence 478888999998887765 5677888888889999999999999998876543 445677888888889999999999
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc---CCHHHHHHHHHHHH
Q 010383 372 EVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS---GKIHEAVHFLYELV 448 (512)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 448 (512)
..+++..+.. +.+...+..+..+|...|++++|.+.++++.+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 78 ~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 78 VLLQQASDAA-PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHHhcC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 9999988864 4567788888899999999999999999988764 55677888888888888 99999999999888
Q ss_pred HCC
Q 010383 449 DSG 451 (512)
Q Consensus 449 ~~~ 451 (512)
+.+
T Consensus 156 ~~~ 158 (568)
T 2vsy_A 156 AQG 158 (568)
T ss_dssp HHT
T ss_pred hcC
Confidence 865
No 111
>2r5s_A Uncharacterized protein VP0806; APC090868.1, vibrio parahaemolyticus RIMD 22 structural genomics, PSI-2, protein structure initiative; HET: MES; 2.14A {Vibrio parahaemolyticus}
Probab=98.99 E-value=1e-08 Score=81.71 Aligned_cols=163 Identities=12% Similarity=0.003 Sum_probs=121.6
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHH
Q 010383 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRG 360 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~ 360 (512)
.+......+.+.|++++|...|++..+.. +.+...+..+...+...|++++|...+.+.+... |++..+......
T Consensus 8 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~--P~~~~a~~~la~~~~~~g~~~~A~~~~~~a~~~~---p~~~~~~~~~~~ 82 (176)
T 2r5s_A 8 QLLKQVSELLQQGEHAQALNVIQTLSDEL--QSRGDVKLAKADCLLETKQFELAQELLATIPLEY---QDNSYKSLIAKL 82 (176)
T ss_dssp THHHHHHHHHHTTCHHHHHHHHHTSCHHH--HTSHHHHHHHHHHHHHTTCHHHHHHHHTTCCGGG---CCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHC--CCcHHHHHHHHHHHHHCCCHHHHHHHHHHhhhcc---CChHHHHHHHHH
Confidence 45566777888899999999998877654 5677888888899999999999999998865443 343333222211
Q ss_pred -HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHH
Q 010383 361 -LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIH 438 (512)
Q Consensus 361 -~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~ 438 (512)
+...+....+...+++..+.. |.+...+..+..++...|++++|...++++++....+ +...+..+...+...|+.+
T Consensus 83 ~~~~~~~~~~a~~~~~~al~~~-P~~~~~~~~la~~~~~~g~~~~A~~~~~~~l~~~p~~~~~~a~~~l~~~~~~~g~~~ 161 (176)
T 2r5s_A 83 ELHQQAAESPELKRLEQELAAN-PDNFELACELAVQYNQVGRDEEALELLWNILKVNLGAQDGEVKKTFMDILSALGQGN 161 (176)
T ss_dssp HHHHHHTSCHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTCTTTTTTHHHHHHHHHHHHHCSSC
T ss_pred HHHhhcccchHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccHHHHHHHHHHHHHhCcccChHHHHHHHHHHHHHhCCCC
Confidence 122233345788888888753 4567888899999999999999999999998765322 3568888999999999999
Q ss_pred HHHHHHHHHHH
Q 010383 439 EAVHFLYELVD 449 (512)
Q Consensus 439 ~a~~~~~~~~~ 449 (512)
+|...|++.+.
T Consensus 162 ~A~~~y~~al~ 172 (176)
T 2r5s_A 162 AIASKYRRQLY 172 (176)
T ss_dssp HHHHHHHHHHH
T ss_pred cHHHHHHHHHH
Confidence 99999987654
No 112
>3rjv_A Putative SEL1 repeat protein; alpha-alpha superhelix, structural genomics, joint center FO structural genomics, JCSG; HET: MSE; 1.65A {Klebsiella pneumoniae subsp}
Probab=98.99 E-value=6.6e-08 Score=79.57 Aligned_cols=176 Identities=11% Similarity=-0.023 Sum_probs=134.5
Q ss_pred hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC----CHHHHHHH
Q 010383 262 ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG----RIQEALNL 337 (512)
Q Consensus 262 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~----~~~~a~~~ 337 (512)
+|...|+...+.| ++..+..+...|...+++++|+..|++..+.+ +...+..+...|.. + ++++|..+
T Consensus 4 eA~~~~~~aa~~g---~~~a~~~lg~~~~~~~~~~~A~~~~~~a~~~g----~~~a~~~lg~~y~~-~g~~~~~~~A~~~ 75 (212)
T 3rjv_A 4 EPGSQYQQQAEAG---DRRAQYYLADTWVSSGDYQKAEYWAQKAAAQG----DGDALALLAQLKIR-NPQQADYPQARQL 75 (212)
T ss_dssp CTTHHHHHHHHTT---CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHTT----CHHHHHHHHHHTTS-STTSCCHHHHHHH
T ss_pred hHHHHHHHHHHCC---CHHHHHHHHHHHhcCCCHHHHHHHHHHHHHcC----CHHHHHHHHHHHHc-CCCCCCHHHHHHH
Confidence 4555666666553 66777888888888899999999999988743 56667777777777 6 89999999
Q ss_pred HHhhcccCCCCCChhhHHHHHHHHHc----cCCHHHHHHHHHHHHhCCCC-CChHhHHHHHHHHHh----cCCHHHHHHH
Q 010383 338 LYQVMPQRGYSPGIVTYNAVLRGLFR----LRRVEEAKEVFNCMLGIGVV-ADSTTYAIVIDGLCE----SNQLDEAKRF 408 (512)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~l~~~~~~----~~~~~~a~~~~~~~~~~~~~-~~~~~~~~l~~~~~~----~g~~~~a~~~ 408 (512)
|.+.... -++..+..+...|.. .+++++|..+|++..+.|.. .++..+..|...|.. .+++++|...
T Consensus 76 ~~~A~~~----g~~~a~~~Lg~~y~~g~g~~~d~~~A~~~~~~A~~~~~~~~~~~a~~~Lg~~y~~g~g~~~d~~~A~~~ 151 (212)
T 3rjv_A 76 AEKAVEA----GSKSGEIVLARVLVNRQAGATDVAHAITLLQDAARDSESDAAVDAQMLLGLIYASGVHGPEDDVKASEY 151 (212)
T ss_dssp HHHHHHT----TCHHHHHHHHHHHTCGGGSSCCHHHHHHHHHHHTSSTTSHHHHHHHHHHHHHHHHTSSSSCCHHHHHHH
T ss_pred HHHHHHC----CCHHHHHHHHHHHHcCCCCccCHHHHHHHHHHHHHcCCCcchHHHHHHHHHHHHcCCCCCCCHHHHHHH
Confidence 9886532 356677778887876 88999999999999887521 126778888888888 7889999999
Q ss_pred HHHhhcCCCCCCHHhHHHHHHHHHhc-C-----CHHHHHHHHHHHHHCC
Q 010383 409 WDDIVWPSNIHDNYVYAAMIKGLCRS-G-----KIHEAVHFLYELVDSG 451 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~~~-g-----~~~~a~~~~~~~~~~~ 451 (512)
|++..+. +.+...+..|...|... | ++++|...|++..+.|
T Consensus 152 ~~~A~~~--~~~~~a~~~Lg~~y~~g~gg~~~~d~~~A~~~~~~A~~~g 198 (212)
T 3rjv_A 152 FKGSSSL--SRTGYAEYWAGMMFQQGEKGFIEPNKQKALHWLNVSCLEG 198 (212)
T ss_dssp HHHHHHT--SCTTHHHHHHHHHHHHCBTTTBCCCHHHHHHHHHHHHHHT
T ss_pred HHHHHHc--CCCHHHHHHHHHHHHcCCCCCCCCCHHHHHHHHHHHHHcC
Confidence 9999875 23445677787777653 3 8999999999988876
No 113
>2vsy_A XCC0866; transferase, glycosyl transferase, GT-B, OGT, protein O-GLCN; HET: NHE; 2.10A {Xanthomonas campestris PV} PDB: 2jlb_A* 2xgm_A* 2xgo_A* 2xgs_A* 2vsn_A*
Probab=98.98 E-value=1.3e-08 Score=97.93 Aligned_cols=164 Identities=13% Similarity=-0.031 Sum_probs=123.1
Q ss_pred cCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHH
Q 010383 257 IKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALN 336 (512)
Q Consensus 257 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~ 336 (512)
.|++++|...+++..+.... +...+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+
T Consensus 2 ~g~~~~A~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~g~~~~A~~ 78 (568)
T 2vsy_A 2 TADGPRELLQLRAAVRHRPQ-DFVAWLMLADAELGMGDTTAGEMAVQRGLALH--PGHPEAVARLGRVRWTQQRHAEAAV 78 (568)
T ss_dssp -------------------C-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHTTS--TTCHHHHHHHHHHHHHTTCHHHHHH
T ss_pred CccHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHCCCHHHHHH
Confidence 47889999999998876533 67888999999999999999999999999876 6678899999999999999999999
Q ss_pred HHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc---CCHHHHHHHHHHhh
Q 010383 337 LLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES---NQLDEAKRFWDDIV 413 (512)
Q Consensus 337 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~---g~~~~a~~~~~~~~ 413 (512)
.+++.+... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++... |+.++|.+.+++..
T Consensus 79 ~~~~al~~~--p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~g~~~~A~~~~~~al 155 (568)
T 2vsy_A 79 LLQQASDAA--PEHPGIALWLGHALEDAGQAEAAAAAYTRAHQLL-PEEPYITAQLLNWRRRLCDWRALDVLSAQVRAAV 155 (568)
T ss_dssp HHHHHHHHC--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCTTHHHHHHHHHHHH
T ss_pred HHHHHHhcC--CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhhccccHHHHHHHHHHHH
Confidence 999987654 4457788899999999999999999999998864 45677889999999999 99999999999998
Q ss_pred cCCCCCCHHhHHHH
Q 010383 414 WPSNIHDNYVYAAM 427 (512)
Q Consensus 414 ~~~~~~~~~~~~~l 427 (512)
+.+ +.+...+..+
T Consensus 156 ~~~-p~~~~~~~~l 168 (568)
T 2vsy_A 156 AQG-VGAVEPFAFL 168 (568)
T ss_dssp HHT-CCCSCHHHHT
T ss_pred hcC-CcccChHHHh
Confidence 765 3333344433
No 114
>2yhc_A BAMD, UPF0169 lipoprotein YFIO; essential BAM component, membrane protein; 1.80A {Escherichia coli} PDB: 3tgo_A 3q5m_A
Probab=98.98 E-value=1e-07 Score=79.40 Aligned_cols=186 Identities=8% Similarity=-0.084 Sum_probs=129.7
Q ss_pred ccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCc-HHHHHHH
Q 010383 245 RICNIYLRALCLIKNPTELLNVLVFMLQTQCQPD--VITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPD-AVTFTTI 321 (512)
Q Consensus 245 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~-~~~~~~l 321 (512)
..+......+...|++++|...|+.+.+..+... ...+..+..++.+.|++++|+..|+++.+.....+. ...+..+
T Consensus 5 ~~~~~~a~~~~~~g~~~~A~~~~~~~~~~~p~~~~~~~a~~~lg~~~~~~~~~~~A~~~~~~~l~~~P~~~~~~~a~~~~ 84 (225)
T 2yhc_A 5 NEIYATAQQKLQDGNWRQAITQLEALDNRYPFGPYSQQVQLDLIYAYYKNADLPLAQAAIDRFIRLNPTHPNIDYVMYMR 84 (225)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHCTTSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTTCTTHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHCcCCCcHHHHHHHH
Confidence 3455667788999999999999999998754321 356778899999999999999999999876521222 1245555
Q ss_pred HHHHhh------------------cCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCC
Q 010383 322 IFGLLN------------------VGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV 383 (512)
Q Consensus 322 ~~~~~~------------------~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~ 383 (512)
..++.. .|+.++|...|.+.+... +-+.......... ..+...+.
T Consensus 85 g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~l~~~--P~~~~a~~a~~~l----------~~~~~~~~----- 147 (225)
T 2yhc_A 85 GLTNMALDDSALQGFFGVDRSDRDPQQARAAFSDFSKLVRGY--PNSQYTTDATKRL----------VFLKDRLA----- 147 (225)
T ss_dssp HHHHHHHHC--------------CCHHHHHHHHHHHHHHTTC--TTCTTHHHHHHHH----------HHHHHHHH-----
T ss_pred HHHHHhhhhhhhhhhhccchhhcCcHHHHHHHHHHHHHHHHC--cCChhHHHHHHHH----------HHHHHHHH-----
Confidence 555553 578999999999977554 2222222221110 01111111
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC---HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
.....+...|.+.|++++|...|+++++.. +.+ ...+..+..++.+.|+.++|.+.++.+...+
T Consensus 148 ---~~~~~~a~~~~~~~~~~~A~~~~~~~l~~~-p~~~~~~~a~~~l~~~~~~~g~~~~A~~~~~~l~~~~ 214 (225)
T 2yhc_A 148 ---KYEYSVAEYYTERGAWVAVVNRVEGMLRDY-PDTQATRDALPLMENAYRQMQMNAQAEKVAKIIAANS 214 (225)
T ss_dssp ---HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHCC
T ss_pred ---HHHHHHHHHHHHcCcHHHHHHHHHHHHHHC-cCCCccHHHHHHHHHHHHHcCCcHHHHHHHHHHHhhC
Confidence 112346778889999999999999998653 222 2468888999999999999999999888764
No 115
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.96 E-value=6.5e-08 Score=84.35 Aligned_cols=164 Identities=14% Similarity=0.090 Sum_probs=117.7
Q ss_pred HHHHHHhhcCCHHHHHHHHHhhcccCCCCCChh----hHHHHHHHHHccCCHHHHHHHHHHHHhCCCC-CC----hHhHH
Q 010383 320 TIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIV----TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVV-AD----STTYA 390 (512)
Q Consensus 320 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~-~~----~~~~~ 390 (512)
..+..+...|++++|...+.+........|+.. .+..+...+...+++++|...+++..+.... ++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 345667788888888888888665443333322 2334666667778889999999888874222 22 22688
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhc----C-CCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC----CCCCC-hhhH
Q 010383 391 IVIDGLCESNQLDEAKRFWDDIVW----P-SNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDS----GVTPN-IVCY 459 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~----~-~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~p~-~~~~ 459 (512)
.+..+|...|++++|...++++.+ . +..+ ...++..+...|.+.|++++|...+++.++. +..+. ..+|
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 888899999999999999988873 1 1122 2337788999999999999999999887752 22222 5678
Q ss_pred HHHHHHHHhcCC-HHHHHHHHHHHH
Q 010383 460 NVVIDGACKLSM-KREAYQILREMR 483 (512)
Q Consensus 460 ~~l~~~~~~~g~-~~~a~~~~~~m~ 483 (512)
..+..++.+.|+ +++|.+.+++..
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al 264 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 889999999994 699999998875
No 116
>3dra_A Protein farnesyltransferase/geranylgeranyltransferase type-1 subunit alpha; geranylgeranyltrasferase, ggtase, ggtase-I, PGGT, prenyltransferase, farnesyltransferase; HET: B3P GRG; 1.80A {Candida albicans}
Probab=98.94 E-value=8.7e-07 Score=76.39 Aligned_cols=232 Identities=10% Similarity=0.016 Sum_probs=138.2
Q ss_pred chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC--CHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHH
Q 010383 189 GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES--DLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNV 266 (512)
Q Consensus 189 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 266 (512)
..++|+++++.++..+ +-+...|+.--..+...| ++++++++++.+... .+.
T Consensus 48 ~s~~aL~~t~~~L~~n-P~~~taWn~R~~~L~~l~~~~~~eeL~~~~~~L~~-nPk------------------------ 101 (306)
T 3dra_A 48 YSERALHITELGINEL-ASHYTIWIYRFNILKNLPNRNLYDELDWCEEIALD-NEK------------------------ 101 (306)
T ss_dssp CSHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCTTSCHHHHHHHHHHHHHH-CTT------------------------
T ss_pred CCHHHHHHHHHHHHHC-cHHHHHHHHHHHHHHHcccccHHHHHHHHHHHHHH-Ccc------------------------
Confidence 3456777777766643 334445555555555555 666666666666543 222
Q ss_pred HHHHHhcCCCCChhhHHHHHHHH----Hhc---CCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHH--HHHHH
Q 010383 267 LVFMLQTQCQPDVITLNTVINGF----CKM---GRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQ--EALNL 337 (512)
Q Consensus 267 ~~~~~~~~~~~~~~~~~~l~~~~----~~~---~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--~a~~~ 337 (512)
+...|+.--..+ ... +++++++.+++.+.+.. +.+..+|+.-...+.+.|.++ ++++.
T Consensus 102 -----------~y~aW~~R~~iL~~~~~~l~~~~~~~~EL~~~~~~l~~~--pkny~aW~~R~~vl~~l~~~~~~~EL~~ 168 (306)
T 3dra_A 102 -----------NYQIWNYRQLIIGQIMELNNNDFDPYREFDILEAMLSSD--PKNHHVWSYRKWLVDTFDLHNDAKELSF 168 (306)
T ss_dssp -----------CCHHHHHHHHHHHHHHHHTTTCCCTHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCTTCHHHHHH
T ss_pred -----------cHHHHHHHHHHHHHHHHhccccCCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhcccChHHHHHH
Confidence 223333222222 222 45666666666666554 455566655555555555555 66666
Q ss_pred HHhhcccCCCCCChhhHHHHHHHHHccCC------HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH-HHHHHHHH
Q 010383 338 LYQVMPQRGYSPGIVTYNAVLRGLFRLRR------VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL-DEAKRFWD 410 (512)
Q Consensus 338 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~ 410 (512)
+.+++... +-+...|+.-...+.+.+. ++++++.++.+.... +-|...|+.+...+.+.|+. +.+..+..
T Consensus 169 ~~~~i~~d--~~N~sAW~~R~~ll~~l~~~~~~~~~~eEl~~~~~aI~~~-p~n~SaW~y~~~ll~~~~~~~~~~~~~~~ 245 (306)
T 3dra_A 169 VDKVIDTD--LKNNSAWSHRFFLLFSKKHLATDNTIDEELNYVKDKIVKC-PQNPSTWNYLLGIHERFDRSITQLEEFSL 245 (306)
T ss_dssp HHHHHHHC--TTCHHHHHHHHHHHHSSGGGCCHHHHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCCGGGGHHHHH
T ss_pred HHHHHHhC--CCCHHHHHHHHHHHHhccccchhhhHHHHHHHHHHHHHhC-CCCccHHHHHHHHHHhcCCChHHHHHHHH
Confidence 66655443 3444555544444445444 777888888887764 56777787777777777764 44556666
Q ss_pred HhhcCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-CCCCChhhHHHHH
Q 010383 411 DIVWPS--NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-GVTPNIVCYNVVI 463 (512)
Q Consensus 411 ~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-~~~p~~~~~~~l~ 463 (512)
++...+ .+.+...+..++.+|.+.|+.++|.++++.+.+. + +.....|+..+
T Consensus 246 ~~~~~~~~~~~s~~al~~la~~~~~~~~~~~A~~~~~~l~~~~D-pir~~yW~~~~ 300 (306)
T 3dra_A 246 QFVDLEKDQVTSSFALETLAKIYTQQKKYNESRTVYDLLKSKYN-PIRSNFWDYQI 300 (306)
T ss_dssp TTEEGGGTEESCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTC-GGGHHHHHHHH
T ss_pred HHHhccCCCCCCHHHHHHHHHHHHccCCHHHHHHHHHHHHhccC-hHHHHHHHHHH
Confidence 665432 2446678888888888889999999999888763 2 22444555433
No 117
>2ifu_A Gamma-SNAP; membrane fusion, snare complex disassembly, protein structure initiative, PSI, center for eukaryotic structural genomics, CESG; HET: MSE; 2.60A {Danio rerio}
Probab=98.87 E-value=5.1e-08 Score=85.58 Aligned_cols=89 Identities=13% Similarity=0.060 Sum_probs=43.6
Q ss_pred hcCChhHHHHHHHHHHhCCC------CCChh----hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHH
Q 010383 41 RTGEMDVAYKVFDEMRHCGV------LPNSL----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANL 110 (512)
Q Consensus 41 ~~~~~~~a~~~~~~m~~~~~------~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l 110 (512)
..|++++|.+++++..+... .++.. .|......|...|++++|...+.+..+..+...+......+|+.+
T Consensus 3 ~~~~~~eA~~~~~~a~k~~~~~~~~~~~~~~~A~~~~~~a~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~a~~~~~l 82 (307)
T 2ifu_A 3 AAQKISEAHEHIAKAEKYLKTSFMKWKPDYDSAASEYAKAAVAFKNAKQLEQAKDAYLQEAEAHANNRSLFHAAKAFEQA 82 (307)
T ss_dssp CHHHHHHHHHHHHHHHHHHCCCSSSCSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ccchHHHHHHHHHHHHHHccccccCCCCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 35677788888887765210 12211 233344455555666666655555554433332211222344445
Q ss_pred HHHHHccCChhHHHHHHHh
Q 010383 111 VDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 111 ~~~~~~~g~~~~a~~~~~~ 129 (512)
...|...|++++|+..|++
T Consensus 83 g~~~~~~g~~~~A~~~~~~ 101 (307)
T 2ifu_A 83 GMMLKDLQRMPEAVQYIEK 101 (307)
T ss_dssp HHHHHHTTCGGGGHHHHHH
T ss_pred HHHHHhCCCHHHHHHHHHH
Confidence 5555555555555554443
No 118
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.87 E-value=2.8e-07 Score=76.04 Aligned_cols=127 Identities=11% Similarity=-0.053 Sum_probs=81.0
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHH
Q 010383 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLC 397 (512)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 397 (512)
+..+...+...|++++|...|.+.+ .|+...+..+...+...|++++|...+++..+.. +.+...+..+..+|.
T Consensus 9 ~~~~g~~~~~~~~~~~A~~~~~~a~-----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 9 LWNEGVLAADKKDWKGALDAFSAVQ-----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHTSS-----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhCCHHHHHHHHHHHc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 3444555666677777777666542 4455666666666677777777777777666643 445556666667777
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCC----------------HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 398 ESNQLDEAKRFWDDIVWPSNIHD----------------NYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 398 ~~g~~~~a~~~~~~~~~~~~~~~----------------~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
..|++++|...++++.+.. +.+ ...+..+..++...|++++|.+.|++..+..
T Consensus 83 ~~~~~~~A~~~~~~al~~~-~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~ 151 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQL-RGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSMK 151 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTT-TTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC
T ss_pred HcccHHHHHHHHHHHHHhC-CCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHcC
Confidence 7777777777777666532 111 2566667777777777777777777776653
No 119
>1hh8_A P67PHOX, NCF-2, neutrophil cytosol factor 2; cell cycle, phagocyte oxidase factor, SH3 domain, repeat, TPR repeat cell cycle; HET: FLC; 1.8A {Homo sapiens} SCOP: a.118.8.1 PDB: 1wm5_A 1e96_B*
Probab=98.86 E-value=2.9e-07 Score=75.93 Aligned_cols=128 Identities=11% Similarity=-0.117 Sum_probs=110.4
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010383 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (512)
.+..+...+...|++++|...|++.. .|+...+..+..+|...|++++|...+++..... +.+...+..+..++.
T Consensus 8 ~~~~~g~~~~~~~~~~~A~~~~~~a~----~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-~~~~~~~~~lg~~~~ 82 (213)
T 1hh8_A 8 SLWNEGVLAADKKDWKGALDAFSAVQ----DPHSRICFNIGCMYTILKNMTEAEKAFTRSINRD-KHLAVAYFQRGMLYY 82 (213)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHTSS----SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhCCHHHHHHHHHHHc----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-ccchHHHHHHHHHHH
Confidence 34556677889999999999998774 5688899999999999999999999999998765 567788999999999
Q ss_pred hcCCHHHHHHHHHHHHHCCCC--------------C-ChhhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 433 RSGKIHEAVHFLYELVDSGVT--------------P-NIVCYNVVIDGACKLSMKREAYQILREMRKN 485 (512)
Q Consensus 433 ~~g~~~~a~~~~~~~~~~~~~--------------p-~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~ 485 (512)
..|++++|.+.|++..+.... | ....+..+..++...|++++|.+.+++..+.
T Consensus 83 ~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~ 150 (213)
T 1hh8_A 83 QTEKYDLAIKDLKEALIQLRGNQLIDYKILGLQFKLFACEVLYNIAFMYAKKEEWKKAEEQLALATSM 150 (213)
T ss_dssp HTTCHHHHHHHHHHHHHTTTTCSEEECGGGTBCCEEEHHHHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcccHHHHHHHHHHHHHhCCCccHHHHHHhccccCccchHHHHHHHHHHHHccCHHHHHHHHHHHHHc
Confidence 999999999999999986422 1 1267888999999999999999999999874
No 120
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.86 E-value=1.1e-07 Score=70.59 Aligned_cols=108 Identities=9% Similarity=0.035 Sum_probs=74.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
.+......|.+.|++++|...|++.++.+ +.+...|..+..+|...|++++|+..+++.++.+ +.+...|..+..++.
T Consensus 15 ~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~ 92 (126)
T 4gco_A 15 EEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACLV 92 (126)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHHH
Confidence 45666777777777777777777777654 5566677777777777777777777777777754 235667777777777
Q ss_pred hcCCHHHHHHHHHHHHHCCCCCCh-HHHHHHHH
Q 010383 468 KLSMKREAYQILREMRKNGLNPDA-VTWRILDK 499 (512)
Q Consensus 468 ~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l~~ 499 (512)
..|++++|.+.|++..+ +.|+. ..+..|.+
T Consensus 93 ~~~~~~~A~~~~~~al~--l~P~~~~a~~~l~~ 123 (126)
T 4gco_A 93 AMREWSKAQRAYEDALQ--VDPSNEEAREGVRN 123 (126)
T ss_dssp HTTCHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HCCCHHHHHHHHHHHHH--HCcCCHHHHHHHHH
Confidence 77888888888777776 44543 34444433
No 121
>3u3w_A Transcriptional activator PLCR protein; ternary complex, PLCR-PAPR7-DNA, HTH DNA-binding domain, QUO sensing; 2.40A {Bacillus thuringiensis} PDB: 2qfc_A
Probab=98.85 E-value=6.5e-07 Score=77.96 Aligned_cols=166 Identities=10% Similarity=-0.015 Sum_probs=123.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHH----HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC----hhhHH
Q 010383 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAV----TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----IVTYN 355 (512)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~~~~~ 355 (512)
..+..+...|++++|...+++........++.. .+..+...+...+++++|+..+.+.+....-.++ ..+++
T Consensus 80 ~~i~~~~~~~~y~~a~~~~~~~l~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~Ai~~~~~al~~~~~~~~~~~~~~~~~ 159 (293)
T 3u3w_A 80 DQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNLYIEN 159 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHHHHTTSSCHHHHHHHHHHHHHTCCCCSCTTHHHHHHH
T ss_pred HHHHHHHHHhhHHHHHHHHHHHhccccCChHHHHHHHHHHHHHHHHHcccCHHHHHHHHHHHHHHhcccccHHHHHHHHH
Confidence 346677888999999999999887543233322 3335677777888999999999988753322333 23688
Q ss_pred HHHHHHHccCCHHHHHHHHHHHHh----C-CCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHhhcC----CCCC-CHHhH
Q 010383 356 AVLRGLFRLRRVEEAKEVFNCMLG----I-GVVAD-STTYAIVIDGLCESNQLDEAKRFWDDIVWP----SNIH-DNYVY 424 (512)
Q Consensus 356 ~l~~~~~~~~~~~~a~~~~~~~~~----~-~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~~~-~~~~~ 424 (512)
.+...|...|++++|...|+++.+ . +..+. ..++..+..+|.+.|++++|...+++.++. +..+ -..++
T Consensus 160 ~lg~~y~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~A~~~~~~al~~~~~~~~~~~~~~~~ 239 (293)
T 3u3w_A 160 AIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALIGQLY 239 (293)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHHHHSSCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCTTHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHHHHhcccchhHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHcCcHHHHHHHH
Confidence 889999999999999999999884 1 11222 237888999999999999999999987632 2122 25688
Q ss_pred HHHHHHHHhcC-CHHHHHHHHHHHHH
Q 010383 425 AAMIKGLCRSG-KIHEAVHFLYELVD 449 (512)
Q Consensus 425 ~~l~~~~~~~g-~~~~a~~~~~~~~~ 449 (512)
..+..+|.+.| ++++|.+.+++...
T Consensus 240 ~~lg~~~~~~g~~~~~A~~~~~~Al~ 265 (293)
T 3u3w_A 240 YQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhCCcHHHHHHHHHHHHH
Confidence 89999999999 46999999988764
No 122
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.84 E-value=5e-07 Score=78.68 Aligned_cols=169 Identities=12% Similarity=0.072 Sum_probs=115.7
Q ss_pred HHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCCh----hhHHHHHHHHHccCCHHHHHHHHHHHHhCCC---CCC--
Q 010383 315 AVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGI----VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGV---VAD-- 385 (512)
Q Consensus 315 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~---~~~-- 385 (512)
...+...+..+...|++++|.+.+.+.+......++. ..+..+...+...|++++|...+++..+... .+.
T Consensus 75 ~~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~ 154 (293)
T 2qfc_A 75 KKQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQN 154 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHH
T ss_pred HHHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHH
Confidence 3444556667778888888888887765433221111 2233455566778889999998888875321 111
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhc---CC-CCC--CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC----CCC-
Q 010383 386 STTYAIVIDGLCESNQLDEAKRFWDDIVW---PS-NIH--DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG----VTP- 454 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~---~~-~~~--~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~p- 454 (512)
..+++.+...|...|++++|...++++.+ .. ..+ ...++..+...|...|++++|...+++..+.. ...
T Consensus 155 ~~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~ 234 (293)
T 2qfc_A 155 LYIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMAL 234 (293)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHH
Confidence 34778888899999999999999988762 11 111 12578888889999999999999998876531 111
Q ss_pred ChhhHHHHHHHHHhcCCHHHH-HHHHHHHH
Q 010383 455 NIVCYNVVIDGACKLSMKREA-YQILREMR 483 (512)
Q Consensus 455 ~~~~~~~l~~~~~~~g~~~~a-~~~~~~m~ 483 (512)
-..+|..+...+.+.|++++| ...+++..
T Consensus 235 ~~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al 264 (293)
T 2qfc_A 235 IGQLYYQRGECLRKLEYEEAEIEDAYKKAS 264 (293)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCcHHHHHHHHHHHH
Confidence 156778888999999999999 77677764
No 123
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.80 E-value=4.5e-08 Score=75.00 Aligned_cols=95 Identities=7% Similarity=-0.016 Sum_probs=52.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
.+..+...+.+.|++++|...|++++..+ +.+...|..+..+|...|++++|+..|++.++.. +.++..|..+..++.
T Consensus 38 ~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~~~~ 115 (151)
T 3gyz_A 38 DIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQCQL 115 (151)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHHHHH
Confidence 44455555555555666666555555443 3445555555555556666666666665555543 124455555555666
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010383 468 KLSMKREAYQILREMRK 484 (512)
Q Consensus 468 ~~g~~~~a~~~~~~m~~ 484 (512)
+.|++++|.+.|++..+
T Consensus 116 ~lg~~~eA~~~~~~al~ 132 (151)
T 3gyz_A 116 RLKAPLKAKECFELVIQ 132 (151)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 66666666666665555
No 124
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.79 E-value=2.1e-07 Score=73.13 Aligned_cols=129 Identities=10% Similarity=-0.048 Sum_probs=95.4
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010383 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
..+..+...+...|++++|...|++..+.. +.+..++..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 14 ~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 14 EELKTQANDYFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345566667777888888888888877753 4466777888888888888888888888887654 55677788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChhhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 010383 432 CRSGKIHEAVHFLYELVDSGVTPNIVCYNV--VIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~--l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
...|++++|...+++..+... .+...+.. .+..+...|++++|.+.+....
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~p-~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVKP-HDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHST-TCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 888888899888888887642 24444533 3344677888888888887664
No 125
>4gco_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; 1.60A {Caenorhabditis elegans}
Probab=98.79 E-value=1.6e-07 Score=69.74 Aligned_cols=98 Identities=10% Similarity=-0.031 Sum_probs=74.7
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010383 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
..+......|.+.|++++|+..|++..+.. +.+...|..+..+|...|++++|...++++++.+ +.+...|..+..++
T Consensus 14 ~~~~~~G~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~ 91 (126)
T 4gco_A 14 QEEKNKGNEYFKKGDYPTAMRHYNEAVKRD-PENAILYSNRAACLTKLMEFQRALDDCDTCIRLD-SKFIKGYIRKAACL 91 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHhhHHHhhccHHHHHHHHHHHHHhh-hhhhHHHHHHHHHH
Confidence 345566777778888888888888877754 5566777778888888888888888888887664 55667788888888
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 010383 432 CRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~~ 451 (512)
...|++++|.+.|++.++..
T Consensus 92 ~~~~~~~~A~~~~~~al~l~ 111 (126)
T 4gco_A 92 VAMREWSKAQRAYEDALQVD 111 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHHC
T ss_pred HHCCCHHHHHHHHHHHHHHC
Confidence 88888888888888887753
No 126
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.79 E-value=2.6e-08 Score=76.57 Aligned_cols=95 Identities=9% Similarity=-0.065 Sum_probs=51.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
.+..+...+...|++++|...|++++..+ +.+...|..+..+|...|++++|...|++.++.. +.+...+..+..++.
T Consensus 23 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~ 100 (148)
T 2vgx_A 23 QLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAECLL 100 (148)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHHHHH
Confidence 44445555555555555555555555443 3345555555555555566666666555555543 124445555555555
Q ss_pred hcCCHHHHHHHHHHHHH
Q 010383 468 KLSMKREAYQILREMRK 484 (512)
Q Consensus 468 ~~g~~~~a~~~~~~m~~ 484 (512)
..|++++|.+.+++..+
T Consensus 101 ~~g~~~~A~~~~~~al~ 117 (148)
T 2vgx_A 101 QXGELAEAESGLFLAQE 117 (148)
T ss_dssp HTTCHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHH
Confidence 56666666655555544
No 127
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.76 E-value=5.5e-06 Score=72.18 Aligned_cols=232 Identities=8% Similarity=0.066 Sum_probs=148.1
Q ss_pred ChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcC-CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhc-C-CHHHHH
Q 010383 259 NPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMG-RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNV-G-RIQEAL 335 (512)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-~-~~~~a~ 335 (512)
..++|+.++..++...+. +...|+.--..+...| .+++++..++.+.... +.+..+|+.-...+... + ++++++
T Consensus 69 ~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n--PKny~aW~hR~wlL~~l~~~~~~~EL 145 (349)
T 3q7a_A 69 KSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN--LKSYQVWHHRLLLLDRISPQDPVSEI 145 (349)
T ss_dssp CSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT--CCCHHHHHHHHHHHHHHCCSCCHHHH
T ss_pred CCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHhcCCChHHHH
Confidence 344566666666665433 4555666666666666 4888888888887766 56677777666666555 5 677888
Q ss_pred HHHHhhcccCCCCCChhhHHHHHHHHHccCCHH--------HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC------
Q 010383 336 NLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVE--------EAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ------ 401 (512)
Q Consensus 336 ~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~------ 401 (512)
+.+.+++... +-+...|+.-.-.+.+.+.++ ++++.++++.+.. +-|...|+....++.+.+.
T Consensus 146 ~~~~k~L~~d--pkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~d-p~N~SAW~~R~~lL~~l~~~~~~~~ 222 (349)
T 3q7a_A 146 EYIHGSLLPD--PKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVD-GRNNSAWGWRWYLRVSRPGAETSSR 222 (349)
T ss_dssp HHHHHHTSSC--TTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHTTSTTCCCCHH
T ss_pred HHHHHHHHhC--CCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccccccchH
Confidence 8887766443 445555554444444444444 7888888888764 5577777777777777765
Q ss_pred -HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH--------------------HHHHHHHHHHHHCC-----CCCC
Q 010383 402 -LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI--------------------HEAVHFLYELVDSG-----VTPN 455 (512)
Q Consensus 402 -~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~--------------------~~a~~~~~~~~~~~-----~~p~ 455 (512)
++++.+.+++++... +.|...|+.+-..+.+.|+. ....++..++...+ -.++
T Consensus 223 ~~~eELe~~~~aI~~~-P~n~SaW~Ylr~Ll~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~s 301 (349)
T 3q7a_A 223 SLQDELIYILKSIHLI-PHNVSAWNYLRGFLKHFSLPLVPILPAILPYTASKLNPDIETVEAFGFPMPSDPLPEDTPLPV 301 (349)
T ss_dssp HHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCSGGGHHHHGGGTC--------------CCCCC-CCCSSCCSCC
T ss_pred HHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhcCCCcccccccccccccccccccchhHHHHHHHHHhcccccccCCCc
Confidence 678888888887664 66777887777777666553 23333333333321 1346
Q ss_pred hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHH
Q 010383 456 IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILD 498 (512)
Q Consensus 456 ~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~ 498 (512)
...+..++..|...|+.++|.++++.+.+. +.|- ..-|+-..
T Consensus 302 ~~al~~l~d~~~~~~~~~~a~~~~~~l~~~-~dpir~~yw~~~~ 344 (349)
T 3q7a_A 302 PLALEYLADSFIEQNRVDDAAKVFEKLSSE-YDQMRAGYWEFRR 344 (349)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-TCGGGHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-hChHHHHHHHHHH
Confidence 677888899999999999999999998643 3443 33444433
No 128
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.76 E-value=8.1e-08 Score=80.72 Aligned_cols=199 Identities=9% Similarity=-0.071 Sum_probs=141.9
Q ss_pred hcCCHHHHHHHHHHHhhCCCCCCcHHHHHHH-------HHHHhhcCCHHHHHHHHHhhcccCCCCCC-------------
Q 010383 291 KMGRIEEALKVLNDMVAGKFCAPDAVTFTTI-------IFGLLNVGRIQEALNLLYQVMPQRGYSPG------------- 350 (512)
Q Consensus 291 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~------------- 350 (512)
..++...|.+.|.++.... +.....|..+ ...+...++..+++..+.+.+ ++.|+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d--P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l---~l~p~~l~a~~~~~g~y~ 92 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD--ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSV---QISMSTLNARIAIGGLYG 92 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTT---TCCGGGGCCEEECCTTTC
T ss_pred cCCCHHHHHHHHHHHHHhC--hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHh---cCChhhhhhhhccCCccc
Confidence 5788899999999888776 5566677666 445555445555555554432 22222
Q ss_pred ---------hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC-
Q 010383 351 ---------IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD- 420 (512)
Q Consensus 351 ---------~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~- 420 (512)
......+...+...|++++|.++|+.+...+ |+......+...+.+.+++++|+..|+...... .|.
T Consensus 93 ~~~~~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~--p~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~ 169 (282)
T 4f3v_A 93 DITYPVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAG--SEHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFL 169 (282)
T ss_dssp CCEEECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTT--CHHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHH
T ss_pred ccccccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcC--CchHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-Cccc
Confidence 1123345667888999999999999888754 443366666678899999999999998775432 121
Q ss_pred -HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC--hhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010383 421 -NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN--IVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 421 -~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~--~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
...+..+..++...|++++|+..|++.......|. .........++.+.|+.++|...|+++... .|+...+..|
T Consensus 170 ~~~a~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~--~P~~~~~~aL 247 (282)
T 4f3v_A 170 AGAAGVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT--HPEPKVAAAL 247 (282)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--SCCHHHHHHH
T ss_pred HHHHHHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc--CCcHHHHHHH
Confidence 33677888999999999999999999885433253 346777888999999999999999999984 5665555555
Q ss_pred HH
Q 010383 498 DK 499 (512)
Q Consensus 498 ~~ 499 (512)
..
T Consensus 248 ~~ 249 (282)
T 4f3v_A 248 KD 249 (282)
T ss_dssp HC
T ss_pred hC
Confidence 43
No 129
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.74 E-value=2.3e-07 Score=69.80 Aligned_cols=96 Identities=8% Similarity=0.015 Sum_probs=51.4
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|.+.+++..+.. +.+...+..+..++
T Consensus 17 ~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~ 94 (133)
T 2lni_A 17 LMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAAAL 94 (133)
T ss_dssp HHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHHHH
Confidence 344455555555555555555555555432 3344455555555555555555555555555542 22444555555555
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 010383 467 CKLSMKREAYQILREMRK 484 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~m~~ 484 (512)
.+.|++++|.+.+++..+
T Consensus 95 ~~~~~~~~A~~~~~~~~~ 112 (133)
T 2lni_A 95 EAMKDYTKAMDVYQKALD 112 (133)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 556666666666555554
No 130
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.74 E-value=3.2e-07 Score=68.01 Aligned_cols=112 Identities=11% Similarity=0.123 Sum_probs=63.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...+
T Consensus 10 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~ 87 (125)
T 1na0_A 10 EAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAY 87 (125)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHH
Confidence 445555566666666666666666665443 3345556666666666666666666666666543 22455566666666
Q ss_pred HhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhh
Q 010383 467 CKLSMKREAYQILREMRKNGLNPDAVTWRILDKLH 501 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~ 501 (512)
...|++++|...++++.+.. +.+...+..+..++
T Consensus 88 ~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~ 121 (125)
T 1na0_A 88 YKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAK 121 (125)
T ss_dssp HHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 66666666666666665532 22333444444433
No 131
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.74 E-value=8.4e-08 Score=76.50 Aligned_cols=118 Identities=8% Similarity=0.077 Sum_probs=52.9
Q ss_pred cCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH-HHhcCCH--HHH
Q 010383 364 LRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG-LCRSGKI--HEA 440 (512)
Q Consensus 364 ~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~~a 440 (512)
.|++++|...+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..+ +...|++ ++|
T Consensus 23 ~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~~A 100 (177)
T 2e2e_A 23 QQNPEAQLQALQDKIRAN-PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTAQT 100 (177)
T ss_dssp ----CCCCHHHHHHHHHC-CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCHHH
T ss_pred ccCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchHHH
Confidence 344444444444444432 2334444445555555555555555555544332 2233444444444 4444554 555
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 441 VHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 441 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
...++++.+.. +.+...+..+...+...|++++|...++++.+
T Consensus 101 ~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 143 (177)
T 2e2e_A 101 RAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMD 143 (177)
T ss_dssp HHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHh
Confidence 55555544432 11334444445555555555555555555444
No 132
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.74 E-value=1.5e-07 Score=76.97 Aligned_cols=126 Identities=10% Similarity=-0.049 Sum_probs=85.0
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC----CCCC-ChhhHHHHHHHHHhcC
Q 010383 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC----GVLP-NSLTYSVLVRGVLRTR 78 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~----~~~~-~~~~~~~l~~~~~~~~ 78 (512)
++..|++++|.+.++.+... +.....++..+...+...|++++|...+++.... +..| ...++..+...+...|
T Consensus 2 ~~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g 80 (203)
T 3gw4_A 2 AFEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAG 80 (203)
T ss_dssp -----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTT
T ss_pred ccccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcC
Confidence 46789999999966655442 3345778899999999999999999999988661 1122 3346777778888899
Q ss_pred ChhhHHHHHHHHHHHhhhcCCCC-cchHhHHHHHHHHHccCChhHHHHHHHhc
Q 010383 79 DVERANVLMFKLWERMKEEEDLS-VNNAAFANLVDSLCREGYVNEVFRIAEDM 130 (512)
Q Consensus 79 ~~~~a~~~~~~~~~~~~~~~~~~-~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 130 (512)
++++|...+.+.++.....++.. .....+..+...+...|++++|...+++.
T Consensus 81 ~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~a 133 (203)
T 3gw4_A 81 NWDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKS 133 (203)
T ss_dssp CHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHH
Confidence 99999998888877665432121 23345566666666677777776666554
No 133
>3gyz_A Chaperone protein IPGC; asymmetric homodimer, tetratricopeptide repeat, TPR, chapero virulence; 2.15A {Shigella flexneri} PDB: 3gz1_A 3gz2_A 3ks2_A
Probab=98.73 E-value=1.4e-07 Score=72.23 Aligned_cols=100 Identities=10% Similarity=-0.029 Sum_probs=81.8
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 429 (512)
+...+..+...+.+.|++++|...|+++.+.. |.+...|..+..+|...|++++|...|+++++.. +.+...|..+..
T Consensus 35 ~~~~~~~lg~~~~~~g~~~eA~~~~~~al~~~-P~~~~~~~~lg~~~~~~g~~~~Ai~~~~~al~l~-P~~~~~~~~lg~ 112 (151)
T 3gyz_A 35 MMDDIYSYAYDFYNKGRIEEAEVFFRFLCIYD-FYNVDYIMGLAAIYQIKEQFQQAADLYAVAFALG-KNDYTPVFHTGQ 112 (151)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-SSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-CCCcHHHHHHHH
Confidence 34566777778888899999999998888864 5567788888888889999999999998888765 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 010383 430 GLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
+|...|++++|...|++.++..
T Consensus 113 ~~~~lg~~~eA~~~~~~al~l~ 134 (151)
T 3gyz_A 113 CQLRLKAPLKAKECFELVIQHS 134 (151)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC
T ss_pred HHHHcCCHHHHHHHHHHHHHhC
Confidence 8999999999999998888763
No 134
>2lni_A Stress-induced-phosphoprotein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, chaperone; NMR {Homo sapiens}
Probab=98.73 E-value=3.2e-07 Score=68.92 Aligned_cols=118 Identities=8% Similarity=-0.072 Sum_probs=83.7
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 429 (512)
+...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++.+.. +.+...+..+..
T Consensus 15 ~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~ 92 (133)
T 2lni_A 15 LALMVKNKGNECFQKGDYPQAMKHYTEAIKRN-PKDAKLYSNRAACYTKLLEFQLALKDCEECIQLE-PTFIKGYTRKAA 92 (133)
T ss_dssp HHHHHHHHHHHHHHTTCSHHHHHHHHHHHTTC-TTCHHHHHHHHHHHTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCcHHHHHHHHHHHHHhccHHHHHHHHHHHHHhC-CCchHHHHHHHH
Confidence 45566667777777888888888888777653 4456677777778888888888888888877654 446677777888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcC
Q 010383 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLS 470 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g 470 (512)
++...|++++|.+.+++..+.. +.+...+..+...+.+.|
T Consensus 93 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~ 132 (133)
T 2lni_A 93 ALEAMKDYTKAMDVYQKALDLD-SSCKEAADGYQRCMMAQY 132 (133)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHC-GGGTHHHHHHHHHHHHHT
T ss_pred HHHHHhhHHHHHHHHHHHHHhC-CCchHHHHHHHHHHHHhc
Confidence 8888888888888888877653 224455666666665544
No 135
>4f3v_A ESX-1 secretion system protein ECCA1; tetratricopeptide repeat, TPR domain, ATPase, protein secret protein transport; 2.00A {Mycobacterium tuberculosis}
Probab=98.71 E-value=4.1e-07 Score=76.48 Aligned_cols=194 Identities=10% Similarity=-0.061 Sum_probs=129.0
Q ss_pred hcCChhHHHHHHHHHHhCCCCCChhhHHHH-------HHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc----------
Q 010383 41 RTGEMDVAYKVFDEMRHCGVLPNSLTYSVL-------VRGVLRTRDVERANVLMFKLWERMKEEEDLSVN---------- 103 (512)
Q Consensus 41 ~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l-------~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~---------- 103 (512)
..+++..|++.|.++.+.. +-....|..+ ...+...+...++...+...+..-+..-....+
T Consensus 18 ~~~d~~~A~~~F~~a~~~d-P~~~Daw~g~~a~g~~~~~~L~~~~r~~~a~~~~~~~l~l~p~~l~a~~~~~g~y~~~~~ 96 (282)
T 4f3v_A 18 LPMSEARSLDLFTEITNYD-ESACDAWIGRIRCGDTDRVTLFRAWYSRRNFGQLSGSVQISMSTLNARIAIGGLYGDITY 96 (282)
T ss_dssp TTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHTTCCCHHHHHHHHHTGGGTTHHHHTTTCCGGGGCCEEECCTTTCCCEE
T ss_pred cCCCHHHHHHHHHHHHHhC-hhhhHHHHhHHHccCCcHHHHHHHHHHHHHHHHHHHHhcCChhhhhhhhccCCccccccc
Confidence 5788999999999998863 2355667766 344444444444433333332211121111111
Q ss_pred -----hHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCC--cch
Q 010383 104 -----NAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPS--LVS 176 (512)
Q Consensus 104 -----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~--~~~ 176 (512)
....-.+...+...|++++|.++|+.+...++ +......+...+.+.+++++|+..|+...... .|. ...
T Consensus 97 ~v~~r~dl~LayA~~L~~~g~y~eA~~~l~~~~~~~p--~~~~~~~~a~l~~~~~r~~dA~~~l~~a~~~~-d~~~~~~a 173 (282)
T 4f3v_A 97 PVTSPLAITMGFAACEAAQGNYADAMEALEAAPVAGS--EHLVAWMKAVVYGAAERWTDVIDQVKSAGKWP-DKFLAGAA 173 (282)
T ss_dssp ECSSHHHHHHHHHHHHHHHTCHHHHHHHHTSSCCTTC--HHHHHHHHHHHHHHTTCHHHHHHHHTTGGGCS-CHHHHHHH
T ss_pred ccCCHhHHHHHHHHHHHHCCCHHHHHHHHHHHHhcCC--chHHHHHHHHHHHHcCCHHHHHHHHHHhhccC-CcccHHHH
Confidence 22334566778889999999999999887663 33255556678889999999999997554321 111 236
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHHhC
Q 010383 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPS--EHTYKVLVEGLCGESDLEKARKVLQFMLSK 238 (512)
Q Consensus 177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 238 (512)
+..+..++...|++++|+..|++.......|. .........++.+.|+.++|..+|+++...
T Consensus 174 ~~~LG~al~~LG~~~eAl~~l~~a~~g~~~P~~~~da~~~~glaL~~lGr~deA~~~l~~a~a~ 237 (282)
T 4f3v_A 174 GVAHGVAAANLALFTEAERRLTEANDSPAGEACARAIAWYLAMARRSQGNESAAVALLEWLQTT 237 (282)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHTSTTTTTTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHCCCHHHHHHHHHHHhcCCCCccccHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 77788889999999999999998875433243 345566777788899999999999988764
No 136
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=2.3e-07 Score=80.07 Aligned_cols=191 Identities=9% Similarity=-0.014 Sum_probs=113.1
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
+..+...+...|++++|...+....+..+ .+...+..+..++.+.|++++|...+++..+.. +.+...+..+..++.
T Consensus 7 ~~~~g~~~~~~g~~~~A~~~~~~al~~~p-~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~ 83 (281)
T 2c2l_A 7 LKEQGNRLFVGRKYPEAAACYGRAITRNP-LVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFLGQCQL 83 (281)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHCS-CCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHhCC-ccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHH
Confidence 33444445555555555555555554432 266777888888888888888888888888765 567778888888888
Q ss_pred hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHH
Q 010383 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAK 406 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~ 406 (512)
..|++++|...|.+.+....- +...+...+....+ ...+.. +........+.+......+...+ .|+.++|.
T Consensus 84 ~~g~~~~A~~~~~~al~l~p~--~~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~i~~~l~~l~--~~~~~~A~ 155 (281)
T 2c2l_A 84 EMESYDEAIANLQRAYSLAKE--QRLNFGDDIPSALR---IAKKKR-WNSIEERRIHQESELHSYLTRLI--AAEREREL 155 (281)
T ss_dssp HTTCHHHHHHHHHHHHHHHHH--TTCCCCSHHHHHHH---HHHHHH-HHHHHHTCCCCCCHHHHHHHHHH--HHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHhCcc--chhhHHHHHHHHHH---HHHHHH-HHHHHHHHHhhhHHHHHHHHHHH--HHHHHHHH
Confidence 888888888888776643211 11111111111111 111111 22223333455555555554332 67888888
Q ss_pred HHHHHhhcCCCCCCHHhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 010383 407 RFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKIHEAVHFLYELVD 449 (512)
Q Consensus 407 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~a~~~~~~~~~ 449 (512)
+.++...+.. +.+......+...+.+. +.+++|.++|.++.+
T Consensus 156 ~~~~~al~~~-p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 156 EECQRNHEGH-EDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp TTTSGGGTTT-SCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHhhhccc-cchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 8888877653 33344444444444444 667888888887764
No 137
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.71 E-value=1.6e-07 Score=81.05 Aligned_cols=194 Identities=9% Similarity=0.029 Sum_probs=133.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 357 (512)
+...+..+...+.+.|++++|+..|++..... +.+...+..+..++...|++++|...+.+.+... +.+...+..+
T Consensus 3 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~la~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l 78 (281)
T 2c2l_A 3 SAQELKEQGNRLFVGRKYPEAAACYGRAITRN--PLVAVYYTNRALCYLKMQQPEQALADCRRALELD--GQSVKAHFFL 78 (281)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--SCCHHHHHHHHHHHHHTTCHHHHHHHHHHHTTSC--TTCHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC--CCCHHHHHHH
Confidence 45677788889999999999999999998865 5688899999999999999999999999977543 4456788889
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH
Q 010383 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI 437 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~ 437 (512)
..++...|++++|...|++..+.. +.+...+...+....+. .++.. +........+.+......+... ..|+.
T Consensus 79 g~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~~~~~~~~~---~~~~~-~~~~~~~~~~~~~~i~~~l~~l--~~~~~ 151 (281)
T 2c2l_A 79 GQCQLEMESYDEAIANLQRAYSLA-KEQRLNFGDDIPSALRI---AKKKR-WNSIEERRIHQESELHSYLTRL--IAAER 151 (281)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHH-HHTTCCCCSHHHHHHHH---HHHHH-HHHHHHTCCCCCCHHHHHHHHH--HHHHH
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-ccchhhHHHHHHHHHHH---HHHHH-HHHHHHHHHhhhHHHHHHHHHH--HHHHH
Confidence 999999999999999999988742 11111111122222111 11111 1222223334555554444333 26889
Q ss_pred HHHHHHHHHHHHCCCCCC-hhhHHHHHHHHHhc-CCHHHHHHHHHHHHH
Q 010383 438 HEAVHFLYELVDSGVTPN-IVCYNVVIDGACKL-SMKREAYQILREMRK 484 (512)
Q Consensus 438 ~~a~~~~~~~~~~~~~p~-~~~~~~l~~~~~~~-g~~~~a~~~~~~m~~ 484 (512)
++|.+.+++..+. .|+ ......+...+.+. +.+++|.++|..+.+
T Consensus 152 ~~A~~~~~~al~~--~p~~~~~~~~l~~~~~~~~~~~~~a~~~f~~a~~ 198 (281)
T 2c2l_A 152 ERELEECQRNHEG--HEDDGHIRAQQACIEAKHDKYMADMDELFSQVDE 198 (281)
T ss_dssp HHHHTTTSGGGTT--TSCHHHHTHHHHHHHHHHHHHHHHHHHHHHHSSC
T ss_pred HHHHHHHHhhhcc--ccchhhhhhHHHHHHHHHHHHHHHHHHHHHhhhc
Confidence 9999999887765 444 33344444444444 678889999988764
No 138
>1na0_A Designed protein CTPR3; de novo protein; HET: IPT; 1.60A {Unidentified} SCOP: k.38.1.1 PDB: 2wqh_A 3kd7_A
Probab=98.71 E-value=5.5e-07 Score=66.66 Aligned_cols=114 Identities=10% Similarity=0.164 Sum_probs=74.9
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010383 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (512)
...+..+...+...|++++|...++++.+.. +.+..++..+...+...|++++|...++++.+.. +.+..++..+...
T Consensus 9 ~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~la~~ 86 (125)
T 1na0_A 9 AEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNA 86 (125)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-cCcHHHHHHHHHHHHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHH
Confidence 3455566666777777777777777776643 3455666777777777777777777777776543 4456677777777
Q ss_pred HHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010383 431 LCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 431 ~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
+...|++++|...++++.+.. +.+...+..+...+.
T Consensus 87 ~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~l~~~~~ 122 (125)
T 1na0_A 87 YYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGNAKQ 122 (125)
T ss_dssp HHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred HHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHH
Confidence 777788888888777777653 224444544444443
No 139
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.71 E-value=2.4e-07 Score=69.36 Aligned_cols=94 Identities=12% Similarity=0.100 Sum_probs=39.7
Q ss_pred HHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh
Q 010383 354 YNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR 433 (512)
Q Consensus 354 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 433 (512)
+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..... +.+...+..+...+..
T Consensus 15 ~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~~~~~ 92 (131)
T 2vyi_A 15 LKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGLALSS 92 (131)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHHHHHH
Confidence 3333444444444444444444444321 2233344444444444444444444444444322 2233344444444444
Q ss_pred cCCHHHHHHHHHHHHH
Q 010383 434 SGKIHEAVHFLYELVD 449 (512)
Q Consensus 434 ~g~~~~a~~~~~~~~~ 449 (512)
.|++++|...+++..+
T Consensus 93 ~~~~~~A~~~~~~~~~ 108 (131)
T 2vyi_A 93 LNKHVEAVAYYKKALE 108 (131)
T ss_dssp TTCHHHHHHHHHHHHH
T ss_pred hCCHHHHHHHHHHHHh
Confidence 4444444444444443
No 140
>1a17_A Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, S helix; 2.45A {Homo sapiens} SCOP: a.118.8.1 PDB: 2bug_A
Probab=98.70 E-value=5.6e-07 Score=70.68 Aligned_cols=128 Identities=10% Similarity=0.016 Sum_probs=78.4
Q ss_pred HHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHH
Q 010383 317 TFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGL 396 (512)
Q Consensus 317 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 396 (512)
.+..+...+...|++++|...+.+.+... +.+...+..+...+...|++++|...+++..+.. +.+...+..+..++
T Consensus 15 ~~~~~a~~~~~~~~~~~A~~~~~~al~~~--~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~ 91 (166)
T 1a17_A 15 ELKTQANDYFKAKDYENAIKFYSQAIELN--PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASN 91 (166)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHHhC--CCChHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 34455555666666666666666654432 3345556666666666777777777777666643 44556667777777
Q ss_pred HhcCCHHHHHHHHHHhhcCCCCCCHHhHHH--HHHHHHhcCCHHHHHHHHHHHH
Q 010383 397 CESNQLDEAKRFWDDIVWPSNIHDNYVYAA--MIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 397 ~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~--l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
...|++++|...++++.+.. +.+...+.. ++..+...|++++|...+.+..
T Consensus 92 ~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~~~ 144 (166)
T 1a17_A 92 MALGKFRAALRDYETVVKVK-PHDKDAKMKYQECNKIVKQKAFERAIAGDEHKR 144 (166)
T ss_dssp HHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHHHHHHHHHHHHcccchH
Confidence 77777777777777776543 334444432 3333666677777777776554
No 141
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.69 E-value=2.5e-07 Score=68.87 Aligned_cols=108 Identities=12% Similarity=0.036 Sum_probs=72.9
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC--CC----hhhHHH
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT--PN----IVCYNV 461 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~--p~----~~~~~~ 461 (512)
.+..+...+.+.|++++|+..|+++++.. +.+...|..+..+|...|++++|++.+++.++.... ++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566777777777777777777777654 455667777777777778888887777777653211 11 134566
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010383 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498 (512)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 498 (512)
+..++...|++++|++.|++... ..||+.+...|-
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~--~~~~~~~~~~l~ 123 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLS--EFRDPELVKKVK 123 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHH--HSCCHHHHHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHh--hCcCHHHHHHHH
Confidence 67777778888888888887776 456666555443
No 142
>2qfc_A PLCR protein; TPR, HTH, transcription regulation; 2.60A {Bacillus thuringiensis serovar ISRAELE35646}
Probab=98.69 E-value=9.1e-07 Score=77.02 Aligned_cols=170 Identities=10% Similarity=-0.009 Sum_probs=121.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcH----HHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC----h
Q 010383 280 ITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDA----VTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG----I 351 (512)
Q Consensus 280 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~----~ 351 (512)
..+...+..+...|++++|.+.+.+..+.....++. ..+..+...+...|++++|+..+.+.+.......+ .
T Consensus 76 ~~l~~~~~~~~~~~~y~~A~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~ 155 (293)
T 2qfc_A 76 KQFKDQVIMLCKQKRYKEIYNKVWNELKKEEYHPEFQQFLQWQYYVAAYVLKKVDYEYCILELKKLLNQQLTGIDVYQNL 155 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCCCHHHHHHHHHHHHHHHHHHTSSCHHHHHHHHHHHHTTCCCSSCTTHHH
T ss_pred HHHHHHHHHHHHhhhHHHHHHHHHHHhccccCChhHHHHHHHHHHHHHHHhcCCCHHHHHHHHHHHHHHHhcCCchHHHH
Confidence 344556777888899999999998877654211211 22344556677888999999999887643221222 3
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhC--CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCC----CCC-C
Q 010383 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGI--GVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPS----NIH-D 420 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~----~~~-~ 420 (512)
.+++.+...|...|++++|...|++..+. ..+.+ ..++..+..+|...|++++|...+++.++.. ... -
T Consensus 156 ~~~~~lg~~y~~~~~~~~A~~~~~kal~~~~~~~~~~~~~~~~~~nlg~~y~~~~~y~~Al~~~~kal~~~~~~~~~~~~ 235 (293)
T 2qfc_A 156 YIENAIANIYAENGYLKKGIDLFEQILKQLEALHDNEEFDVKVRYNHAKALYLDSRYEESLYQVNKAIEISCRINSMALI 235 (293)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTBCSSH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHhcCccccchHHHHHhHHHHHHHHhhHHHHHHHHHHHHHHHHhcCcHHHH
Confidence 47788889999999999999999988731 11111 2578889999999999999999999876421 111 2
Q ss_pred HHhHHHHHHHHHhcCCHHHH-HHHHHHHHH
Q 010383 421 NYVYAAMIKGLCRSGKIHEA-VHFLYELVD 449 (512)
Q Consensus 421 ~~~~~~l~~~~~~~g~~~~a-~~~~~~~~~ 449 (512)
..++..+..+|...|++++| ...+++...
T Consensus 236 ~~~~~~lg~~y~~~g~~~~Ai~~~~~~Al~ 265 (293)
T 2qfc_A 236 GQLYYQRGECLRKLEYEEAEIEDAYKKASF 265 (293)
T ss_dssp HHHHHHHHHHHHHTTCCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCcHHHHHHHHHHHHH
Confidence 56788899999999999999 777777653
No 143
>2vyi_A SGTA protein; chaperone, TPR repeat, phosphoprotein, tetratricopeptide repeat protein, HOST-virus interaction; 2.4A {Homo sapiens} SCOP: k.38.1.1
Probab=98.68 E-value=3.3e-07 Score=68.59 Aligned_cols=119 Identities=8% Similarity=0.002 Sum_probs=100.2
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010383 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464 (512)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 464 (512)
+...+..+...+...|++++|...++++.... +.+...+..+...+...|++++|.+.+++..+.. +.+...+..+..
T Consensus 11 ~~~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~~~ 88 (131)
T 2vyi_A 11 EAERLKTEGNEQMKVENFEAAVHFYGKAIELN-PANAVYFCNRAAAYSKLGNYAGAVQDCERAICID-PAYSKAYGRMGL 88 (131)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHccCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhhchHHHHHHHHHHHhcC-ccCHHHHHHHHH
Confidence 45567888899999999999999999998764 5577889999999999999999999999998864 335778899999
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010383 465 GACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506 (512)
Q Consensus 465 ~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 506 (512)
.+...|++++|.+.+++..+.. +.+...+..+..++...|+
T Consensus 89 ~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~l~~~~~~~~~ 129 (131)
T 2vyi_A 89 ALSSLNKHVEAVAYYKKALELD-PDNETYKSNLKIAELKLRE 129 (131)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTT
T ss_pred HHHHhCCHHHHHHHHHHHHhcC-ccchHHHHHHHHHHHHHhc
Confidence 9999999999999999998753 3356677777777776664
No 144
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.65 E-value=1.1e-07 Score=72.48 Aligned_cols=96 Identities=9% Similarity=0.027 Sum_probs=51.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010383 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (512)
.+..+...+.+.|++++|...|+...... +.+...+..+..+|...|++++|...+++++..+ +.+...+..+..++.
T Consensus 20 ~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~ 97 (142)
T 2xcb_A 20 QLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAECHL 97 (142)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHHHH
Confidence 33444445555556666666655555542 3344455555555555555555555555555443 334445555555555
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 010383 433 RSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 433 ~~g~~~~a~~~~~~~~~~ 450 (512)
..|++++|.+.|++.++.
T Consensus 98 ~~g~~~~A~~~~~~al~~ 115 (142)
T 2xcb_A 98 QLGDLDGAESGFYSARAL 115 (142)
T ss_dssp HTTCHHHHHHHHHHHHHH
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 555555555555555543
No 145
>2e2e_A Formate-dependent nitrite reductase complex NRFG; TPR, cytochrome C biogenesis, O157:H7 EDL933, formate- nitrite reductase complex, lyase; 2.05A {Escherichia coli}
Probab=98.65 E-value=1.7e-07 Score=74.65 Aligned_cols=121 Identities=7% Similarity=0.066 Sum_probs=73.5
Q ss_pred hcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHH-HHhcCCH--H
Q 010383 327 NVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDG-LCESNQL--D 403 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~-~~~~g~~--~ 403 (512)
..|++++|...+.+.+... +.+...+..+...|...|++++|...|++..+.. +.+...+..+..+ +...|++ +
T Consensus 22 ~~~~~~~A~~~~~~al~~~--p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~la~~l~~~~~~~~~~ 98 (177)
T 2e2e_A 22 SQQNPEAQLQALQDKIRAN--PQNSEQWALLGEYYLWQNDYSNSLLAYRQALQLR-GENAELYAALATVLYYQASQHMTA 98 (177)
T ss_dssp -----CCCCHHHHHHHHHC--CSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH-CSCHHHHHHHHHHHHHHTTTCCCH
T ss_pred hccCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHHhcCCcchH
Confidence 3455556666665544333 3344556666666666677777777766666543 3345556666666 5666776 7
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
+|...++++++.. +.+...+..+...+...|++++|...++++.+..
T Consensus 99 ~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~~~ 145 (177)
T 2e2e_A 99 QTRAMIDKALALD-SNEITALMLLASDAFMQANYAQAIELWQKVMDLN 145 (177)
T ss_dssp HHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTC
T ss_pred HHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcccHHHHHHHHHHHHhhC
Confidence 7777777776553 4455666677777777777777777777777653
No 146
>3gw4_A Uncharacterized protein; structural genomics, PSI-2, protein structure initiative, no structural genomics consortium, NESG, DRR162B; 2.49A {Deinococcus radiodurans R1}
Probab=98.64 E-value=1.7e-07 Score=76.56 Aligned_cols=160 Identities=9% Similarity=-0.073 Sum_probs=90.4
Q ss_pred HhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCC
Q 010383 40 CRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY 119 (512)
Q Consensus 40 ~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 119 (512)
...|++++|.+.++.+... ......++..+...+...|++++|...+.+.++.............++..+...+...|+
T Consensus 3 ~~~g~~~~A~~~~~~~~~~-~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 81 (203)
T 3gw4_A 3 FEAHDYALAERQAQALLAH-PATASGARFMLGYVYAFMDRFDEARASFQALQQQAQKSGDHTAEHRALHQVGMVERMAGN 81 (203)
T ss_dssp ----CHHHHHHHHHHHHTS-TTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHTTC
T ss_pred cccccHHHHHHHHHHhcCC-hHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHcCC
Confidence 4678999999966555432 123556788888889999999999999888887665543333444566667777777777
Q ss_pred hhHHHHHHHhcCCC----CCCC--cchhHHHHHHHHHhcCChhhHHHHHHHHHHcC---CCCC--cchHHHHHHHHhccC
Q 010383 120 VNEVFRIAEDMPQG----KSVN--EEFACGHMIDSLCRSGRNHGASRVVYVMRKRG---LTPS--LVSYNSIVHGLCKHG 188 (512)
Q Consensus 120 ~~~a~~~~~~~~~~----~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g---~~p~--~~~~~~l~~~~~~~~ 188 (512)
+++|.+.+++.... +..+ ....+..+...+...|++++|...+++..... ..+. ..++..+...+...|
T Consensus 82 ~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~la~~~~~~g 161 (203)
T 3gw4_A 82 WDAARRCFLEERELLASLPEDPLAASANAYEVATVALHFGDLAGARQEYEKSLVYAQQADDQVAIACAFRGLGDLAQQEK 161 (203)
T ss_dssp HHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHHHHHcCccHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHCc
Confidence 77777776654332 1011 12334445555555666666665555544210 0000 112334444444555
Q ss_pred chhHHHHHHHHH
Q 010383 189 GCMRAYQLLEEG 200 (512)
Q Consensus 189 ~~~~a~~~~~~~ 200 (512)
++++|.+.+++.
T Consensus 162 ~~~~A~~~~~~a 173 (203)
T 3gw4_A 162 NLLEAQQHWLRA 173 (203)
T ss_dssp CHHHHHHHHHHH
T ss_pred CHHHHHHHHHHH
Confidence 555555554443
No 147
>2vgx_A Chaperone SYCD; alternative dimer assembly, tetratricopeptide repeat, type III secretion; HET: MLY; 1.95A {Yersinia enterocolitica} SCOP: k.38.1.1 PDB: 2vgx_B* 2vgy_A*
Probab=98.64 E-value=2.2e-07 Score=71.34 Aligned_cols=99 Identities=15% Similarity=0.059 Sum_probs=77.3
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 429 (512)
+...+..+...+...|++++|...|+...... +.+...+..+..+|...|++++|...|++++..+ +.+...+..+..
T Consensus 20 ~~~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~ 97 (148)
T 2vgx_A 20 TLEQLYSLAFNQYQSGXYEDAHXVFQALCVLD-HYDSRFFLGLGACRQAMGQYDLAIHSYSYGAVMD-IXEPRFPFHAAE 97 (148)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCChHHHHHHHHHHHHcC-cccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCchHHHHHHH
Confidence 34556667777788888888888888887754 5567777888888888888888888888887654 556677788888
Q ss_pred HHHhcCCHHHHHHHHHHHHHC
Q 010383 430 GLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~ 450 (512)
+|...|++++|.+.|++.++.
T Consensus 98 ~~~~~g~~~~A~~~~~~al~~ 118 (148)
T 2vgx_A 98 CLLQXGELAEAESGLFLAQEL 118 (148)
T ss_dssp HHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHH
Confidence 888888888888888888765
No 148
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.63 E-value=6.5e-07 Score=66.56 Aligned_cols=96 Identities=10% Similarity=0.076 Sum_probs=62.9
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..+..+...+...|++++|...|++.++.. +.+...|..+..++...|++++|...+++.++.. +.+...|..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345555666666777777777777666543 4455666667777777777777777777766654 22455666677777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 010383 467 CKLSMKREAYQILREMRK 484 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~m~~ 484 (512)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~al~ 100 (126)
T 3upv_A 83 IAVKEYASALETLDAART 100 (126)
T ss_dssp HHTTCHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHH
Confidence 777777777777776655
No 149
>3q7a_A Farnesyltransferase alpha subunit; protein prenyltransferase, transferase-transferase inhibitor; HET: SUC 3FX FPP 778; 2.00A {Cryptococcus neoformans} PDB: 3q73_A* 3q78_A* 3q79_A* 3q75_A* 3q7f_A* 3sfx_A* 3sfy_A*
Probab=98.62 E-value=3.2e-05 Score=67.42 Aligned_cols=175 Identities=9% Similarity=-0.055 Sum_probs=110.3
Q ss_pred HhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC-chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhcc-C-CHH
Q 010383 150 CRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG-GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGE-S-DLE 226 (512)
Q Consensus 150 ~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g-~~~ 226 (512)
.+.+..++|+++++.+...++. +..+|+.--..+...| .+++++++++.+.... +-+..+|+.-...+... + +++
T Consensus 65 ~~~e~se~AL~lt~~~L~~nP~-~ytaWn~R~~iL~~l~~~l~eEL~~~~~~L~~n-PKny~aW~hR~wlL~~l~~~~~~ 142 (349)
T 3q7a_A 65 AKEEKSERALELTEIIVRMNPA-HYTVWQYRFSLLTSLNKSLEDELRLMNEFAVQN-LKSYQVWHHRLLLLDRISPQDPV 142 (349)
T ss_dssp HTTCCSHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHHHCCSCCH
T ss_pred HhCCCCHHHHHHHHHHHHhCch-hHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHhcCCChH
Confidence 3445556788888888876443 5566776666666666 4888888888887754 45666666655555554 5 777
Q ss_pred HHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChh--------hHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCC----
Q 010383 227 KARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPT--------ELLNVLVFMLQTQCQPDVITLNTVINGFCKMGR---- 294 (512)
Q Consensus 227 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~--------~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~---- 294 (512)
++.++++.+.+. .+.+...|+.-.-.+...+.++ ++++.+..+++..+. |...|+.....+.+.++
T Consensus 143 ~EL~~~~k~L~~-dpkNy~AW~~R~wvl~~l~~~~~~~~~~~~eELe~~~k~I~~dp~-N~SAW~~R~~lL~~l~~~~~~ 220 (349)
T 3q7a_A 143 SEIEYIHGSLLP-DPKNYHTWAYLHWLYSHFSTLGRISEAQWGSELDWCNEMLRVDGR-NNSAWGWRWYLRVSRPGAETS 220 (349)
T ss_dssp HHHHHHHHHTSS-CTTCHHHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHTTSTTCCCC
T ss_pred HHHHHHHHHHHh-CCCCHHHHHHHHHHHHHhccccccchhhHHHHHHHHHHHHHhCCC-CHHHHHHHHHHHHhccccccc
Confidence 888888887753 3444455555444444444444 666777777766544 66666666666666654
Q ss_pred ---HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010383 295 ---IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 295 ---~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
++++++.+++..... +.|...|+-+-..+.+.|.
T Consensus 221 ~~~~~eELe~~~~aI~~~--P~n~SaW~Ylr~Ll~~~~~ 257 (349)
T 3q7a_A 221 SRSLQDELIYILKSIHLI--PHNVSAWNYLRGFLKHFSL 257 (349)
T ss_dssp HHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTC
T ss_pred hHHHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHhcCC
Confidence 567777777666654 5566666655544444443
No 150
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.62 E-value=7.3e-07 Score=79.12 Aligned_cols=94 Identities=4% Similarity=-0.108 Sum_probs=60.5
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|...|++.++.. +.+...+..+..++
T Consensus 197 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 274 (336)
T 1p5q_A 197 ASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVCQ 274 (336)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHH
Confidence 456666666777777777777777766554 4456666667777777777777777777766653 22455666666677
Q ss_pred HhcCCHHHH-HHHHHHH
Q 010383 467 CKLSMKREA-YQILREM 482 (512)
Q Consensus 467 ~~~g~~~~a-~~~~~~m 482 (512)
.+.|++++| ..+++.|
T Consensus 275 ~~~~~~~~a~~~~~~~~ 291 (336)
T 1p5q_A 275 QRIRRQLAREKKLYANM 291 (336)
T ss_dssp HHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHH
Confidence 777776666 3345544
No 151
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.61 E-value=1.5e-06 Score=63.44 Aligned_cols=96 Identities=15% Similarity=0.066 Sum_probs=63.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666666777777777777666543 3455666666677777777777777777766653 22455666677777
Q ss_pred HhcCCHHHHHHHHHHHHH
Q 010383 467 CKLSMKREAYQILREMRK 484 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~m~~ 484 (512)
...|++++|.+.+++..+
T Consensus 83 ~~~~~~~~A~~~~~~~~~ 100 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLK 100 (118)
T ss_dssp HHTTCHHHHHHHHHHHHT
T ss_pred HHHhhHHHHHHHHHHHHH
Confidence 777777777777777665
No 152
>2xcb_A PCRH, regulatory protein PCRH; protein transport, bacterial toxin, type III secretion, protein binding; 1.85A {Pseudomonas aeruginosa} PDB: 2xcc_A
Probab=98.56 E-value=5.4e-07 Score=68.64 Aligned_cols=97 Identities=8% Similarity=-0.078 Sum_probs=72.2
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010383 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 465 (512)
...+..+...+...|++++|...|++++..+ +.+...|..+..++...|++++|...|++.++.. +.+...+..+..+
T Consensus 18 ~~~~~~~a~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~~ 95 (142)
T 2xcb_A 18 LEQLYALGFNQYQAGKWDDAQKIFQALCMLD-HYDARYFLGLGACRQSLGLYEQALQSYSYGALMD-INEPRFPFHAAEC 95 (142)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCTHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHccHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCcHHHHHHHHH
Confidence 3455566677777888888888888877654 5566777778888888888888888888877764 2356667777788
Q ss_pred HHhcCCHHHHHHHHHHHHH
Q 010383 466 ACKLSMKREAYQILREMRK 484 (512)
Q Consensus 466 ~~~~g~~~~a~~~~~~m~~ 484 (512)
+...|++++|.+.+++..+
T Consensus 96 ~~~~g~~~~A~~~~~~al~ 114 (142)
T 2xcb_A 96 HLQLGDLDGAESGFYSARA 114 (142)
T ss_dssp HHHTTCHHHHHHHHHHHHH
T ss_pred HHHcCCHHHHHHHHHHHHH
Confidence 8888888888888887765
No 153
>3upv_A Heat shock protein STI1; TPR-fold, adaptor protein for HSP70 and HSP90, C-terminal PA HSP70, peptide binding protein; 1.60A {Saccharomyces cerevisiae}
Probab=98.55 E-value=1.3e-06 Score=64.90 Aligned_cols=97 Identities=11% Similarity=-0.002 Sum_probs=73.8
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010383 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
..+..+...+.+.|++++|...|++..+.. +.+...+..+..+|...|++++|...+++.++.+ +.+...+..+..++
T Consensus 5 ~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~a~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~ 82 (126)
T 3upv_A 5 EEARLEGKEYFTKSDWPNAVKAYTEMIKRA-PEDARGYSNRAAALAKLMSFPEAIADCNKAIEKD-PNFVRAYIRKATAQ 82 (126)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCChHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHH
Confidence 345566667777888888888888877754 4566777888888888888888888888887654 55667778888888
Q ss_pred HhcCCHHHHHHHHHHHHHC
Q 010383 432 CRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~ 450 (512)
...|++++|...|++..+.
T Consensus 83 ~~~~~~~~A~~~~~~al~~ 101 (126)
T 3upv_A 83 IAVKEYASALETLDAARTK 101 (126)
T ss_dssp HHTTCHHHHHHHHHHHHHH
T ss_pred HHHhCHHHHHHHHHHHHHh
Confidence 8888888888888887764
No 154
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.55 E-value=1.4e-06 Score=62.94 Aligned_cols=95 Identities=12% Similarity=0.044 Sum_probs=43.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCC--ChhhHHHHHHH
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTP--NIVCYNVVIDG 465 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~ 465 (512)
.+..+...+...|++++|...++++.+.. +.+...+..+..++...|++++|.+.+++..+.. +. +...+..+...
T Consensus 8 ~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~l~~~ 85 (112)
T 2kck_A 8 EYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAAKADA 85 (112)
T ss_dssp GGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHHHHHH
Confidence 33444444444444444444444444332 2333444444445555555555555555544432 11 23444444455
Q ss_pred HHhc-CCHHHHHHHHHHHHH
Q 010383 466 ACKL-SMKREAYQILREMRK 484 (512)
Q Consensus 466 ~~~~-g~~~~a~~~~~~m~~ 484 (512)
+... |++++|.+.+++..+
T Consensus 86 ~~~~~~~~~~A~~~~~~~~~ 105 (112)
T 2kck_A 86 LRYIEGKEVEAEIAEARAKL 105 (112)
T ss_dssp HTTCSSCSHHHHHHHHHHGG
T ss_pred HHHHhCCHHHHHHHHHHHhh
Confidence 5555 555555555555443
No 155
>1elw_A TPR1-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, HSP70, protein binding, chaperone; 1.60A {Homo sapiens} SCOP: a.118.8.1
Probab=98.54 E-value=3.1e-06 Score=61.73 Aligned_cols=98 Identities=9% Similarity=-0.011 Sum_probs=68.0
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010383 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
..+..+...+...|++++|...+++..... +.+...+..+..++...|++++|...+++..+.. +.+...+..+..++
T Consensus 5 ~~~~~~~~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~~~a~~~ 82 (118)
T 1elw_A 5 NELKEKGNKALSVGNIDDALQCYSEAIKLD-PHNHVLYSNRSAAYAKKGDYQKAYEDGCKTVDLK-PDWGKGYSRKAAAL 82 (118)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHhhccHHHHHHHHHHHHHhC-cccHHHHHHHHHHH
Confidence 345556666677777777777777776643 3456667777777777777777777777776553 44566777777777
Q ss_pred HhcCCHHHHHHHHHHHHHCC
Q 010383 432 CRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 432 ~~~g~~~~a~~~~~~~~~~~ 451 (512)
...|++++|.+.+++..+.+
T Consensus 83 ~~~~~~~~A~~~~~~~~~~~ 102 (118)
T 1elw_A 83 EFLNRFEEAKRTYEEGLKHE 102 (118)
T ss_dssp HHTTCHHHHHHHHHHHHTTC
T ss_pred HHHhhHHHHHHHHHHHHHcC
Confidence 77778888887777777653
No 156
>1p5q_A FKBP52, FK506-binding protein 4; isomerase; 2.80A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 PDB: 1qz2_A
Probab=98.54 E-value=1.7e-06 Score=76.71 Aligned_cols=96 Identities=8% Similarity=0.030 Sum_probs=71.1
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010383 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (512)
...|..+..++.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus 196 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 273 (336)
T 1p5q_A 196 LASHLNLAMCHLKLQAFSAAIESCNKALELD-SNNEKGLSRRGEAHLAVNDFELARADFQKVLQLY-PNNKAAKTQLAVC 273 (336)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHH
Confidence 3567777777888888888888888887754 4566777888888888888888888888887654 4566677778888
Q ss_pred HHhcCCHHHH-HHHHHHHH
Q 010383 431 LCRSGKIHEA-VHFLYELV 448 (512)
Q Consensus 431 ~~~~g~~~~a-~~~~~~~~ 448 (512)
+...|+.++| ...+++|.
T Consensus 274 ~~~~~~~~~a~~~~~~~~~ 292 (336)
T 1p5q_A 274 QQRIRRQLAREKKLYANMF 292 (336)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 8888888777 44555554
No 157
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.53 E-value=5.3e-05 Score=65.72 Aligned_cols=192 Identities=10% Similarity=0.042 Sum_probs=110.4
Q ss_pred HHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcC--CHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCC-HHHHH
Q 010383 295 IEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVG--RIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRR-VEEAK 371 (512)
Q Consensus 295 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~-~~~a~ 371 (512)
+++++.+++.+.... +.+..+|+.-...+...+ .+++++..+.+++... +-+...|+.-.-.+...|. +++++
T Consensus 90 l~~EL~~~~~~L~~~--PKny~aW~hR~wlL~~l~~~~~~~EL~~~~k~l~~d--prNy~AW~~R~~vl~~l~~~~~eel 165 (331)
T 3dss_A 90 VKAELGFLESCLRVN--PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD--ERNFHCWDYRRFVAAQAAVAPAEEL 165 (331)
T ss_dssp HHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHCSSCCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHTTCCHHHHH
T ss_pred HHHHHHHHHHHHHhC--CCCHHHHHHHHHHHhccCcccHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHHhCcCHHHHH
Confidence 455566666655544 445555555555555545 3566666666655443 3344455444444445555 46666
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhc--------------CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc---
Q 010383 372 EVFNCMLGIGVVADSTTYAIVIDGLCES--------------NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS--- 434 (512)
Q Consensus 372 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~--- 434 (512)
..++.+.+.. +-|...|+.....+... +.++++.+.+...+... +.|...|+.+-..+.+.
T Consensus 166 ~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~ 243 (331)
T 3dss_A 166 AFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGR 243 (331)
T ss_dssp HHHHHHHHHC-SCCHHHHHHHHHHHHHHSCCC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCG
T ss_pred HHHHHHHHHC-CCCHHHHHHHHHHHHHhhhccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCc
Confidence 6666666643 34555555544444433 34677777777777654 56777777665555554
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH-----HhcCCHHHHHHHHHHHHHCCCCCCh-HHHHHH
Q 010383 435 --------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA-----CKLSMKREAYQILREMRKNGLNPDA-VTWRIL 497 (512)
Q Consensus 435 --------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~-----~~~g~~~~a~~~~~~m~~~~~~p~~-~~~~~l 497 (512)
+.++++++.++++.+. .|+. .|..+..+. ...|..+++..++.++.+ +.|.. .-|.-|
T Consensus 244 ~~~~~~~~~~l~~el~~~~elle~--~pd~-~w~l~~~~~~~~~~~~~~~~~~~~~~l~~l~~--~Dp~r~~~y~d~ 315 (331)
T 3dss_A 244 CELSVEKSTVLQSELESCKELQEL--EPEN-KWCLLTIILLMRALDPLLYEKETLQYFSTLKA--VDPMRAAYLDDL 315 (331)
T ss_dssp GGCCHHHHHHHHHHHHHHHHHHHH--CTTC-HHHHHHHHHHHHHHCTTTTHHHHHHHHHHHHH--HCGGGHHHHHHH
T ss_pred cccchHHHHHHHHHHHHHHHHHhh--Cccc-chHHHHHHHHHHhhcccccHHHHHHHHHHHHH--hCcchhhHHHHH
Confidence 3577888888888876 3443 344332222 246777888889999887 45543 344444
No 158
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.52 E-value=5.5e-06 Score=63.42 Aligned_cols=113 Identities=10% Similarity=-0.009 Sum_probs=74.3
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC----HHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010383 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD----NYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460 (512)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 460 (512)
+...+..+...+...|++++|...|++..+.. |+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~--~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGLD--ATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTSC--CCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHc--ccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 44456666666777777777777777776543 33 4566777777777777777777777777653 22556677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCC-hHHHHHHHHhhc
Q 010383 461 VVIDGACKLSMKREAYQILREMRKNGLNPD-AVTWRILDKLHG 502 (512)
Q Consensus 461 ~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~-~~~~~~l~~~~~ 502 (512)
.+..++...|++++|.+.+++..+. .|+ ...+..+.++..
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~--~p~~~~~~~~l~~~~~ 144 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL--EPKNKVFQEALRNISG 144 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH--CSSCHHHHHHHHHHHC
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc--CCCcHHHHHHHHHHHh
Confidence 7777777788888888888777763 343 444544444443
No 159
>2kck_A TPR repeat; tetratricopeptide repeat, structural genomics, unknown function, PSI-2, protein structure initiative; NMR {Methanococcus maripaludis}
Probab=98.52 E-value=1.4e-06 Score=62.96 Aligned_cols=102 Identities=15% Similarity=0.055 Sum_probs=89.4
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC--CHHhHHH
Q 010383 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH--DNYVYAA 426 (512)
Q Consensus 349 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~--~~~~~~~ 426 (512)
.+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +. +...+..
T Consensus 4 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~~~ 81 (112)
T 2kck_A 4 QNPEEYYLEGVLQYDAGNYTESIDLFEKAIQLD-PEESKYWLMKGKALYNLERYEEAVDCYNYVINVI-EDEYNKDVWAA 81 (112)
T ss_dssp SSTTGGGGHHHHHHSSCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTS-CCTTCHHHHHH
T ss_pred CcHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhC-cCCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-cccchHHHHHH
Confidence 345677888889999999999999999998864 5567788999999999999999999999998764 44 6788999
Q ss_pred HHHHHHhc-CCHHHHHHHHHHHHHCCC
Q 010383 427 MIKGLCRS-GKIHEAVHFLYELVDSGV 452 (512)
Q Consensus 427 l~~~~~~~-g~~~~a~~~~~~~~~~~~ 452 (512)
+..++... |++++|.+.+.+..+...
T Consensus 82 l~~~~~~~~~~~~~A~~~~~~~~~~~p 108 (112)
T 2kck_A 82 KADALRYIEGKEVEAEIAEARAKLEHH 108 (112)
T ss_dssp HHHHHTTCSSCSHHHHHHHHHHGGGCC
T ss_pred HHHHHHHHhCCHHHHHHHHHHHhhccc
Confidence 99999999 999999999999988753
No 160
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.51 E-value=6.1e-06 Score=76.42 Aligned_cols=164 Identities=10% Similarity=0.037 Sum_probs=103.6
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCCh----------------HhHHHHHHHHHhcCChhHHHHHHHHHHhCC-CCCChh
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHVPNV----------------VSYTTLIHGYCRTGEMDVAYKVFDEMRHCG-VLPNSL 65 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~-~~~~~~ 65 (512)
.+.+.|++++|++.|..+.+....... .++..++..|.+.|++++|.+.+..+...- ..++..
T Consensus 13 ~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~~~ 92 (434)
T 4b4t_Q 13 RLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAKSK 92 (434)
T ss_dssp HHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccchH
Confidence 356789999999999999887433211 236788999999999999999998876521 112221
Q ss_pred ----hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCC----CC-C
Q 010383 66 ----TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQG----KS-V 136 (512)
Q Consensus 66 ----~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~----~~-~ 136 (512)
+.+.+...+...|+.+.+..++.+.....+..........++..+...+...|++++|..+++++... +. .
T Consensus 93 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~~~ 172 (434)
T 4b4t_Q 93 TVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDDKP 172 (434)
T ss_dssp HHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSCST
T ss_pred HHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhcccch
Confidence 22333344455788888888888877766665454445566667777777777777777776654321 11 1
Q ss_pred CcchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010383 137 NEEFACGHMIDSLCRSGRNHGASRVVYVMR 166 (512)
Q Consensus 137 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (512)
....++..++..|...|++++|...++...
T Consensus 173 ~~~~~~~~~~~~~~~~~~~~~A~~~~~~al 202 (434)
T 4b4t_Q 173 SLVDVHLLESKVYHKLRNLAKSKASLTAAR 202 (434)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHhCcHHHHHHHHHHHH
Confidence 112344445555555555555555555443
No 161
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.51 E-value=1.2e-07 Score=77.16 Aligned_cols=95 Identities=13% Similarity=-0.020 Sum_probs=50.6
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..+..+..+|...|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++..+.. +-+...+..+..++
T Consensus 89 ~~~~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~ 166 (198)
T 2fbn_A 89 SCNLNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCV 166 (198)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHH
Confidence 445555666666666666666666665543 3455566666666666666666666666666543 22445555555666
Q ss_pred HhcCCHHHHH-HHHHHHH
Q 010383 467 CKLSMKREAY-QILREMR 483 (512)
Q Consensus 467 ~~~g~~~~a~-~~~~~m~ 483 (512)
...++.+++. ..+..|.
T Consensus 167 ~~~~~~~~~~~~~~~~~f 184 (198)
T 2fbn_A 167 NKLKEARKKDKLTFGGMF 184 (198)
T ss_dssp HHHHHHHC----------
T ss_pred HHHHHHHHHHHHHHHHHh
Confidence 5555555554 3344443
No 162
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.49 E-value=1.8e-06 Score=64.46 Aligned_cols=108 Identities=7% Similarity=0.043 Sum_probs=60.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCC--CCC----hhhHHH
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGV--TPN----IVCYNV 461 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~p~----~~~~~~ 461 (512)
.+..+...+...|++++|...+++..... +.+...+..+...+...|++++|...+++..+... .++ ..++..
T Consensus 6 ~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~~ 84 (131)
T 1elr_A 6 KEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYAR 84 (131)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHHH
Confidence 44555555566666666666666655443 33455555666666666666666666666554321 111 445556
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHH
Q 010383 462 VIDGACKLSMKREAYQILREMRKNGLNPDAVTWRILD 498 (512)
Q Consensus 462 l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~ 498 (512)
+...+...|++++|.+.++++.+. .|+...+..+.
T Consensus 85 la~~~~~~~~~~~A~~~~~~~~~~--~~~~~~~~~l~ 119 (131)
T 1elr_A 85 IGNSYFKEEKYKDAIHFYNKSLAE--HRTPDVLKKCQ 119 (131)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--CCCHHHHHHHH
T ss_pred HHHHHHHhccHHHHHHHHHHHHHh--CCCHHHHHHHH
Confidence 666666666666666666666652 34544444443
No 163
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.48 E-value=3.5e-06 Score=63.60 Aligned_cols=96 Identities=8% Similarity=-0.038 Sum_probs=45.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010383 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 465 (512)
...+..+...+...|++++|...+++.+... +.+...+..+..++...|++++|...+++.++.. +.+...|..+..+
T Consensus 9 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~ 86 (137)
T 3q49_B 9 AQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLGQC 86 (137)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHHHH
Confidence 3344444444445555555555555444332 2334444445555555555555555555544432 1134444445555
Q ss_pred HHhcCCHHHHHHHHHHHH
Q 010383 466 ACKLSMKREAYQILREMR 483 (512)
Q Consensus 466 ~~~~g~~~~a~~~~~~m~ 483 (512)
+...|++++|...+++..
T Consensus 87 ~~~~~~~~~A~~~~~~a~ 104 (137)
T 3q49_B 87 QLEMESYDEAIANLQRAY 104 (137)
T ss_dssp HHHTTCHHHHHHHHHHHH
T ss_pred HHHHhhHHHHHHHHHHHH
Confidence 555555555555555443
No 164
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.47 E-value=1.4e-06 Score=68.33 Aligned_cols=100 Identities=8% Similarity=-0.030 Sum_probs=80.0
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 429 (512)
+...+..+...+...|++++|+..|++..+.. +.+...+..+..+|...|++++|...++++++.. +.+...|..+..
T Consensus 10 ~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~lg~ 87 (164)
T 3sz7_A 10 ESDKLKSEGNAAMARKEYSKAIDLYTQALSIA-PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRLGL 87 (164)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 45567777788888888888888888888754 4467778888888888888888888888887765 556778888888
Q ss_pred HHHhcCCHHHHHHHHHHHHHCC
Q 010383 430 GLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
+|...|++++|...|++.++..
T Consensus 88 ~~~~~g~~~~A~~~~~~al~~~ 109 (164)
T 3sz7_A 88 ARFDMADYKGAKEAYEKGIEAE 109 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHccCHHHHHHHHHHHHHhC
Confidence 8888888888888888887753
No 165
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.47 E-value=1.5e-06 Score=63.85 Aligned_cols=94 Identities=11% Similarity=-0.072 Sum_probs=57.3
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010383 389 YAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468 (512)
Q Consensus 389 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 468 (512)
+..+...+.+.|++++|...++++++.. +.+...|..+..++...|++++|+..|++.++..+ .+...+..+..++..
T Consensus 20 ~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~P-~~~~~~~~la~~~~~ 97 (121)
T 1hxi_A 20 PMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLDP-KDIAVHAALAVSHTN 97 (121)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCC-CCHHHHHHHHHHHHH
Confidence 3444555666666666666666666543 44555666666666666666666666666666532 245556666666666
Q ss_pred cCCHHHHHHHHHHHHH
Q 010383 469 LSMKREAYQILREMRK 484 (512)
Q Consensus 469 ~g~~~~a~~~~~~m~~ 484 (512)
.|++++|...+++..+
T Consensus 98 ~g~~~~A~~~~~~al~ 113 (121)
T 1hxi_A 98 EHNANAALASLRAWLL 113 (121)
T ss_dssp HHHHHHHHHHHHHHHC
T ss_pred cCCHHHHHHHHHHHHH
Confidence 6666666666666654
No 166
>2fbn_A 70 kDa peptidylprolyl isomerase, putative; sulfur SAD, PFL2275C, TPR-containing domain, structural genomics; 1.63A {Plasmodium falciparum} SCOP: a.118.8.1
Probab=98.46 E-value=2.7e-06 Score=69.03 Aligned_cols=157 Identities=9% Similarity=-0.093 Sum_probs=101.9
Q ss_pred HHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCC--------------hhhH
Q 010383 289 FCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPG--------------IVTY 354 (512)
Q Consensus 289 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~--------------~~~~ 354 (512)
....|+++.+.+.++...... ......+..+...+...|++++|+..|.+.+....-.|+ ...+
T Consensus 14 ~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~~~~~~~ 91 (198)
T 2fbn_A 14 RENLYFQGAKKSIYDYTDEEK--VQSAFDIKEEGNEFFKKNEINEAIVKYKEALDFFIHTEEWDDQILLDKKKNIEISCN 91 (198)
T ss_dssp --------CCCSGGGCCHHHH--HHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTTTCTTCCCHHHHHHHHHHHHHHH
T ss_pred hhhhhhccccCchhhCCHHHH--HHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHhcccccchhhHHHHHHHHHHHHH
Confidence 344466666666665332211 234556777788888899999999999887754432331 1577
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc
Q 010383 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS 434 (512)
Q Consensus 355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~ 434 (512)
..+..++...|++++|...++...+.. +.+...+..+..+|...|++++|...|++..+.. +.+...+..+..++...
T Consensus 92 ~~la~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~~~~~~~ 169 (198)
T 2fbn_A 92 LNLATCYNKNKDYPKAIDHASKVLKID-KNNVKALYKLGVANMYFGFLEEAKENLYKAASLN-PNNLDIRNSYELCVNKL 169 (198)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCHHHHHHHHHHHHHhC-cccHHHHHHHHHHHHHcccHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHH
Confidence 778888888999999999998888864 5567788888888999999999999998887654 45666777777777777
Q ss_pred CCHHHHH-HHHHHHHH
Q 010383 435 GKIHEAV-HFLYELVD 449 (512)
Q Consensus 435 g~~~~a~-~~~~~~~~ 449 (512)
++.+++. ..+..+..
T Consensus 170 ~~~~~~~~~~~~~~f~ 185 (198)
T 2fbn_A 170 KEARKKDKLTFGGMFD 185 (198)
T ss_dssp HHHHC-----------
T ss_pred HHHHHHHHHHHHHHhc
Confidence 7666665 44555544
No 167
>4gcn_A Protein STI-1; structural genomics, PSI-biology, midwest center for structu genomics, MCSG, tetratricopeptide repeat domain; HET: PGE; 1.85A {Caenorhabditis elegans}
Probab=98.45 E-value=2.8e-06 Score=63.10 Aligned_cols=104 Identities=11% Similarity=0.113 Sum_probs=70.5
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCC----HHhHHH
Q 010383 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHD----NYVYAA 426 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~~ 426 (512)
.+..+...+.+.|++++|+..|++..+.. |.+...|..+..+|...|++++|+..+++.++... .++ ..+|..
T Consensus 10 a~~~lG~~~~~~~~~~~A~~~y~~Al~~~-p~~~~~~~nlg~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~a~~~~~ 88 (127)
T 4gcn_A 10 AEKDLGNAAYKQKDFEKAHVHYDKAIELD-PSNITFYNNKAAVYFEEKKFAECVQFCEKAVEVGRETRADYKLIAKAMSR 88 (127)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHhHHHHHHHhhhHHHHHHHHHHHHHhCcccchhhHHHHHHHHH
Confidence 45566677777777777777777777653 44566777777777778888888777777764221 111 235666
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhH
Q 010383 427 MIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCY 459 (512)
Q Consensus 427 l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~ 459 (512)
+..++...|++++|++.|++.++. .|++.+.
T Consensus 89 lg~~~~~~~~~~~A~~~~~kal~~--~~~~~~~ 119 (127)
T 4gcn_A 89 AGNAFQKQNDLSLAVQWFHRSLSE--FRDPELV 119 (127)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHH--SCCHHHH
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhh--CcCHHHH
Confidence 777788888888888888887764 4555443
No 168
>3q49_B STIP1 homology and U box-containing protein 1; E3 ubiquitin ligase, ligase-chaperone complex; 1.54A {Mus musculus} PDB: 3q47_B 3q4a_B*
Probab=98.45 E-value=8.2e-06 Score=61.50 Aligned_cols=100 Identities=12% Similarity=-0.053 Sum_probs=75.3
Q ss_pred CChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHH
Q 010383 349 PGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMI 428 (512)
Q Consensus 349 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 428 (512)
.+...+..+...+...|++++|...|+...+.. +.+...+..+..++...|++++|...++++++.. +.+...+..+.
T Consensus 7 ~~~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~l~ 84 (137)
T 3q49_B 7 PSAQELKEQGNRLFVGRKYPEAAACYGRAITRN-PLVAVYYTNRALCYLKMQQPEQALADCRRALELD-GQSVKAHFFLG 84 (137)
T ss_dssp CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHH
T ss_pred ccHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhC-cCcHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-chhHHHHHHHH
Confidence 345667777777778888888888888777754 4456677778888888888888888888877654 45667778888
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 010383 429 KGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.++...|++++|...|++..+.
T Consensus 85 ~~~~~~~~~~~A~~~~~~a~~~ 106 (137)
T 3q49_B 85 QCQLEMESYDEAIANLQRAYSL 106 (137)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHhhHHHHHHHHHHHHHH
Confidence 8888888888888888877754
No 169
>4b4t_Q 26S proteasome regulatory subunit RPN6; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=98.44 E-value=1e-05 Score=74.83 Aligned_cols=201 Identities=7% Similarity=-0.074 Sum_probs=125.8
Q ss_pred HHHHHhcCChhHHHHHHHHHHhCCCCCCh----------------hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCC
Q 010383 36 IHGYCRTGEMDVAYKVFDEMRHCGVLPNS----------------LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEED 99 (512)
Q Consensus 36 ~~~~~~~~~~~~a~~~~~~m~~~~~~~~~----------------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 99 (512)
...+.+.|++++|++.|.++.+....... .++..+...|...|++++|.+.+.++....+....
T Consensus 11 a~~l~~~~~y~eA~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~al~~l~~~y~~~~~~~~a~~~~~~~~~~~~~~~~ 90 (434)
T 4b4t_Q 11 ARRLVNEKQYNEAEQVYLSLLDKDSSQSSAAAGASVDDKRRNEQETSILELGQLYVTMGAKDKLREFIPHSTEYMMQFAK 90 (434)
T ss_dssp HHHHHHHTCHHHHHHHHHHHHHSCCCSSSBSSSSSBCSHHHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHTHHHHHTSCH
T ss_pred HHHHHHCCCHHHHHHHHHHHHhhCcccchhHHHHHHHHHHhhhHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHHHHHccc
Confidence 45678899999999999999885322111 13677888899999999998888877766544322
Q ss_pred CCcchHhHHHHHHHHHccCChhHHHHHHHhcCC----CC-CCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHc--CCC-
Q 010383 100 LSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQ----GK-SVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKR--GLT- 171 (512)
Q Consensus 100 ~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~----~~-~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~--g~~- 171 (512)
......+.+.+...+...|+.++|..+++.... .+ ......++..+...+...|++++|..+++.+... +..
T Consensus 91 ~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~l~~~~~~~~~~~~ 170 (434)
T 4b4t_Q 91 SKTVKVLKTLIEKFEQVPDSLDDQIFVCEKSIEFAKREKRVFLKHSLSIKLATLHYQKKQYKDSLALINDLLREFKKLDD 170 (434)
T ss_dssp HHHHHHHHHHHHHHCSCCSCHHHHHHHHHHHHHHHHHSSCCSSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHTTSSC
T ss_pred hHHHHHHHHHHHHHHhCCCCHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHccChHHHHHHHHHHHHHHHhccc
Confidence 112223344444555567788888777766432 11 1122345666777777888888888777766542 111
Q ss_pred -C-CcchHHHHHHHHhccCchhHHHHHHHHHHhC----CCCCc--hhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010383 172 -P-SLVSYNSIVHGLCKHGGCMRAYQLLEEGIQF----GYLPS--EHTYKVLVEGLCGESDLEKARKVLQFML 236 (512)
Q Consensus 172 -p-~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~----~~~~~--~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (512)
| ...++..++..|...|++++|..++++.... +.++. ...+..+...+...|+++.|...|....
T Consensus 171 ~~~~~~~~~~~~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~~~g~~~~~~~~y~~A~~~~~~a~ 243 (434)
T 4b4t_Q 171 KPSLVDVHLLESKVYHKLRNLAKSKASLTAARTAANSIYCPTQTVAELDLMSGILHCEDKDYKTAFSYFFESF 243 (434)
T ss_dssp STHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHHHHHHHTTSSSCHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHHHHhCcHHHHHHHHHHHHHHhhcCCCchHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHH
Confidence 1 1236667777777777777777777766532 11111 2345555666667777777776666554
No 170
>3sz7_A HSC70 cochaperone (SGT); TPR domain, GET4, GET5, GET3, MDY2, SSA1, SSE1, chaperone regulator; 1.72A {Aspergillus fumigatus}
Probab=98.42 E-value=4e-06 Score=65.63 Aligned_cols=100 Identities=10% Similarity=0.022 Sum_probs=68.6
Q ss_pred CcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHH
Q 010383 313 PDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIV 392 (512)
Q Consensus 313 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l 392 (512)
.+...+..+...+...|++++|+..|.+.+... +.+...|..+..+|...|++++|+..|++..+.. +.+...+..+
T Consensus 9 ~~a~~~~~~g~~~~~~g~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~l 85 (164)
T 3sz7_A 9 PESDKLKSEGNAAMARKEYSKAIDLYTQALSIA--PANPIYLSNRAAAYSASGQHEKAAEDAELATVVD-PKYSKAWSRL 85 (164)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHH
T ss_pred hhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CcCHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHH
Confidence 455666667777777777777777777766443 3355666677777777777777777777777653 4456667777
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcC
Q 010383 393 IDGLCESNQLDEAKRFWDDIVWP 415 (512)
Q Consensus 393 ~~~~~~~g~~~~a~~~~~~~~~~ 415 (512)
..+|...|++++|...|++.++.
T Consensus 86 g~~~~~~g~~~~A~~~~~~al~~ 108 (164)
T 3sz7_A 86 GLARFDMADYKGAKEAYEKGIEA 108 (164)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHccCHHHHHHHHHHHHHh
Confidence 77777777777777777777654
No 171
>1elr_A TPR2A-domain of HOP; HOP, TPR-domain, peptide-complex, helical repeat, protein binding, chaperone; 1.90A {Homo sapiens} SCOP: a.118.8.1 PDB: 3esk_A 3fwv_A
Probab=98.41 E-value=2.2e-06 Score=63.97 Aligned_cols=111 Identities=9% Similarity=0.122 Sum_probs=73.2
Q ss_pred hhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCC--CCC----HHhHH
Q 010383 352 VTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSN--IHD----NYVYA 425 (512)
Q Consensus 352 ~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~--~~~----~~~~~ 425 (512)
..+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...++++..... .++ ..++.
T Consensus 5 ~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~la~~~~~~~~~~~A~~~~~~~~~~~~~~~~~~~~~~~~~~ 83 (131)
T 1elr_A 5 LKEKELGNDAYKKKDFDTALKHYDKAKELD-PTNMTYITNQAAVYFEKGDYNKCRELCEKAIEVGRENREDYRQIAKAYA 83 (131)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSTTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHhccHHHHHHHHHHHHhhccccchhHHHHHHHHH
Confidence 345556666677777777777777776643 44566677777777777777777777777764321 111 55677
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH
Q 010383 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG 465 (512)
Q Consensus 426 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~ 465 (512)
.+..++...|++++|.+.|++..+.. |+...+..+...
T Consensus 84 ~la~~~~~~~~~~~A~~~~~~~~~~~--~~~~~~~~l~~~ 121 (131)
T 1elr_A 84 RIGNSYFKEEKYKDAIHFYNKSLAEH--RTPDVLKKCQQA 121 (131)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC--CCHHHHHHHHHH
T ss_pred HHHHHHHHhccHHHHHHHHHHHHHhC--CCHHHHHHHHHH
Confidence 77788888888888888888877753 455444444333
No 172
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.40 E-value=5.2e-06 Score=61.83 Aligned_cols=92 Identities=12% Similarity=-0.028 Sum_probs=52.6
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH---HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC---hhhHHHHHH
Q 010383 391 IVIDGLCESNQLDEAKRFWDDIVWPSNIHDN---YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN---IVCYNVVID 464 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~---~~~~~~l~~ 464 (512)
.+...+...|++++|...++.+.+.. +.+. ..+..+..++...|++++|...++++.+..+. + ...+..+..
T Consensus 7 ~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~p~-~~~~~~~~~~la~ 84 (129)
T 2xev_A 7 NVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRYPT-HDKAAGGLLKLGL 84 (129)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-STTHHHHHHHHHH
T ss_pred HHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHCCC-CcccHHHHHHHHH
Confidence 34445555666666666666655432 2222 35555666666666666666666666654311 2 344555666
Q ss_pred HHHhcCCHHHHHHHHHHHHH
Q 010383 465 GACKLSMKREAYQILREMRK 484 (512)
Q Consensus 465 ~~~~~g~~~~a~~~~~~m~~ 484 (512)
++...|++++|...++++.+
T Consensus 85 ~~~~~g~~~~A~~~~~~~~~ 104 (129)
T 2xev_A 85 SQYGEGKNTEAQQTLQQVAT 104 (129)
T ss_dssp HHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHH
Confidence 66666666666666666665
No 173
>2dba_A Smooth muscle cell associated protein-1, isoform 2; tetratricopeptide repeat, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.37 E-value=1.1e-05 Score=61.59 Aligned_cols=98 Identities=15% Similarity=0.052 Sum_probs=71.5
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYA 425 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~ 425 (512)
+...+..+...+...|++++|...|++..+. .|+ ...+..+..+|...|++++|...+++..+.. +.+...+.
T Consensus 27 ~~~~~~~~a~~~~~~~~~~~A~~~~~~a~~~--~~~~~~~~~~~~~~a~~~~~~~~~~~A~~~~~~~~~~~-~~~~~~~~ 103 (148)
T 2dba_A 27 SVEQLRKEGNELFKCGDYGGALAAYTQALGL--DATPQDQAVLHRNRAACHLKLEDYDKAETEASKAIEKD-GGDVKALY 103 (148)
T ss_dssp CHHHHHHHHHHHHTTTCHHHHHHHHHHHHTS--CCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-SCCHHHHH
T ss_pred HHHHHHHHHHHHHHhCCHHHHHHHHHHHHHH--cccchHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhhC-ccCHHHHH
Confidence 4455666677777777888888877777764 344 5567777777888888888888888777653 44566777
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 426 AMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 426 ~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+..++...|++++|...|++..+.
T Consensus 104 ~~a~~~~~~~~~~~A~~~~~~al~~ 128 (148)
T 2dba_A 104 RRSQALEKLGRLDQAVLDLQRCVSL 128 (148)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHcCCHHHHHHHHHHHHHc
Confidence 7778888888888888888887765
No 174
>1hxi_A PEX5, peroxisome targeting signal 1 receptor PEX5; alpha helical, transport protein; 1.60A {Trypanosoma brucei} SCOP: a.118.8.1
Probab=98.35 E-value=3.8e-06 Score=61.71 Aligned_cols=96 Identities=14% Similarity=-0.013 Sum_probs=77.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHH
Q 010383 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLC 432 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~ 432 (512)
.+..+...+.+.|++++|...|++..+.. +.+...+..+..++...|++++|...+++.++.. +.+...+..+..++.
T Consensus 19 ~~~~~g~~~~~~g~~~~A~~~~~~al~~~-P~~~~a~~~lg~~~~~~g~~~~A~~~~~~al~l~-P~~~~~~~~la~~~~ 96 (121)
T 1hxi_A 19 NPMEEGLSMLKLANLAEAALAFEAVCQKE-PEREEAWRSLGLTQAENEKDGLAIIALNHARMLD-PKDIAVHAALAVSHT 96 (121)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHH
Confidence 45556677788889999999998888754 5567788888888888999999999998888765 556778888888888
Q ss_pred hcCCHHHHHHHHHHHHHC
Q 010383 433 RSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 433 ~~g~~~~a~~~~~~~~~~ 450 (512)
..|++++|...+++.++.
T Consensus 97 ~~g~~~~A~~~~~~al~~ 114 (121)
T 1hxi_A 97 NEHNANAALASLRAWLLS 114 (121)
T ss_dssp HHHHHHHHHHHHHHHHC-
T ss_pred HcCCHHHHHHHHHHHHHh
Confidence 889999999998888765
No 175
>3dss_A Geranylgeranyl transferase type-2 subunit alpha; protein prenylation, metal-binding, prenyltransferase, zinc, phosphoprotein; 1.80A {Rattus norvegicus} PDB: 3dst_A* 3dsu_A* 3dsv_A* 3dsw_A* 3dsx_A* 3hxb_A* 3hxc_A* 3hxd_A* 3hxe_A* 3hxf_A* 3pz1_A* 3pz2_A* 3pz3_A* 3c72_A* 4gtv_A* 4gts_A* 4ehm_A* 4gtt_A*
Probab=98.33 E-value=0.00013 Score=63.23 Aligned_cols=195 Identities=11% Similarity=0.076 Sum_probs=142.0
Q ss_pred hcCCH-HHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC----------HHHHHHHHHhhcccCCCCCChhhHHHHHH
Q 010383 291 KMGRI-EEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR----------IQEALNLLYQVMPQRGYSPGIVTYNAVLR 359 (512)
Q Consensus 291 ~~~~~-~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~ 359 (512)
+.|.+ ++|+..++.+...+ +.+...|+.--..+...+. +++++..+..++... +-+..+|+.-.-
T Consensus 41 ~~~e~s~eaL~~t~~~L~~n--P~~ytaWn~Rr~iL~~l~~~~~~~~~~~~l~~EL~~~~~~L~~~--PKny~aW~hR~w 116 (331)
T 3dss_A 41 QAGELDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCW 116 (331)
T ss_dssp HTTCCSHHHHHHHHHHHTTC--TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHH
T ss_pred HcCCCCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHHhcccccchhhhHHHHHHHHHHHHHHHhC--CCCHHHHHHHHH
Confidence 34444 46888888888765 4555555544333333222 578888888877554 456667776666
Q ss_pred HHHccC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC-HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc--
Q 010383 360 GLFRLR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ-LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-- 434 (512)
Q Consensus 360 ~~~~~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-- 434 (512)
.+.+.+ .+++++.+++.+.+.. +-|...|+.-..++...|. ++++.+.+.++++.+ +.|...|+.....+...
T Consensus 117 lL~~l~~~~~~~EL~~~~k~l~~d-prNy~AW~~R~~vl~~l~~~~~eel~~~~~~I~~~-p~N~SAW~~R~~ll~~l~~ 194 (331)
T 3dss_A 117 LLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHP 194 (331)
T ss_dssp HHHHCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHC-SCCHHHHHHHHHHHHHHSC
T ss_pred HHhccCcccHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHhCcCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhhh
Confidence 666666 4899999999999875 6677888888888888888 589999999999876 66788888777776655
Q ss_pred ------------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhc-----------CCHHHHHHHHHHHHHCCCCCCh
Q 010383 435 ------------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKL-----------SMKREAYQILREMRKNGLNPDA 491 (512)
Q Consensus 435 ------------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~-----------g~~~~a~~~~~~m~~~~~~p~~ 491 (512)
+.++++++.+.+.+... +-|...|+.+-..+.+. +.++++++.++++.+ +.||.
T Consensus 195 ~~~~~~~~~~~~~~~~eEle~~~~ai~~~-P~d~SaW~Y~r~ll~~~~~~~~~~~~~~~~l~~el~~~~elle--~~pd~ 271 (331)
T 3dss_A 195 QPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGAGSGRCELSVEKSTVLQSELESCKELQE--LEPEN 271 (331)
T ss_dssp CC------CCCHHHHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHSSSCGGGCCHHHHHHHHHHHHHHHHHHH--HCTTC
T ss_pred ccccccccccchHHHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHhccCccccchHHHHHHHHHHHHHHHHHh--hCccc
Confidence 45789999999998875 33788888776666655 457899999999988 56775
Q ss_pred HHHH
Q 010383 492 VTWR 495 (512)
Q Consensus 492 ~~~~ 495 (512)
.|.
T Consensus 272 -~w~ 274 (331)
T 3dss_A 272 -KWC 274 (331)
T ss_dssp -HHH
T ss_pred -chH
Confidence 444
No 176
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.29 E-value=3.4e-06 Score=65.72 Aligned_cols=102 Identities=12% Similarity=0.011 Sum_probs=68.6
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCC-CCh----hhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcc
Q 010383 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVL-PNS----LTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVN 103 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~-~~~----~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~ 103 (512)
..++..+...+...|++++|...+++..+.... ++. .++..+...+...|++++|...+.+.++..+...+....
T Consensus 9 ~~~~~~l~~~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~ 88 (164)
T 3ro3_A 9 GRAFGNLGNTHYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVE 88 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHH
Confidence 446788888888999999999999887653110 111 356777788888889999888888877766554333333
Q ss_pred hHhHHHHHHHHHccCChhHHHHHHHhc
Q 010383 104 NAAFANLVDSLCREGYVNEVFRIAEDM 130 (512)
Q Consensus 104 ~~~~~~l~~~~~~~g~~~~a~~~~~~~ 130 (512)
...+..+...+...|++++|.+.+++.
T Consensus 89 ~~~~~~l~~~~~~~~~~~~A~~~~~~a 115 (164)
T 3ro3_A 89 AQSCYSLGNTYTLLQDYEKAIDYHLKH 115 (164)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHH
Confidence 445555666666666666666665553
No 177
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.29 E-value=8.5e-06 Score=63.57 Aligned_cols=62 Identities=19% Similarity=0.107 Sum_probs=33.8
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 422 YVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 422 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
..|..+..+|.+.|++++|+..+++.++.. +.+...|..+..++...|++++|...+++..+
T Consensus 64 ~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~ 125 (162)
T 3rkv_A 64 PLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLR 125 (162)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHh
Confidence 345555555555555555555555555543 22444555555555555555555555555554
No 178
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.27 E-value=1.9e-05 Score=73.57 Aligned_cols=118 Identities=10% Similarity=-0.021 Sum_probs=93.7
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
.+.+.|++++|++.|++.++..+. +..+|..+..+|.+.|++++|+..+++..+.. +.+..+|..+..++...|++++
T Consensus 15 ~~~~~g~~~~A~~~~~~Al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~e 92 (477)
T 1wao_1 15 DYFKAKDYENAIKFYSQAIELNPS-NAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRA 92 (477)
T ss_dssp STTTTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHH
T ss_pred HHHHhCCHHHHHHHHHHHHHhCCc-cHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHH
Confidence 567899999999999999987433 68899999999999999999999999999864 3467789999999999999999
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHHHHH--HHccCChhHHHHHHH
Q 010383 83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDS--LCREGYVNEVFRIAE 128 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~--~~~~g~~~~a~~~~~ 128 (512)
|...++++++..+.. ...+..+..+ +.+.|++++|.+.++
T Consensus 93 A~~~~~~al~~~p~~------~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 93 ALRDYETVVKVKPHD------KDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHHSTTC------TTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHHhCCCC------HHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 999999988764432 2234444444 788899999999998
No 179
>2xev_A YBGF; tetratricopeptide, alpha-helical, metal binding; 1.57A {Xanthomonas campestris}
Probab=98.25 E-value=3.1e-05 Score=57.51 Aligned_cols=94 Identities=13% Similarity=0.077 Sum_probs=67.4
Q ss_pred HHHHHHHHccCCHHHHHHHHHHHHhCCCCCCh---HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCC---HHhHHHHH
Q 010383 355 NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADS---TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHD---NYVYAAMI 428 (512)
Q Consensus 355 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~---~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---~~~~~~l~ 428 (512)
..+...+...|++++|...|+.+.+.. +.+. ..+..+..++...|++++|...++++.+.. +.+ ...+..+.
T Consensus 6 ~~~a~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~lg~~~~~~~~~~~A~~~~~~~~~~~-p~~~~~~~~~~~la 83 (129)
T 2xev_A 6 YNVAFDALKNGKYDDASQLFLSFLELY-PNGVYTPNALYWLGESYYATRNFQLAEAQFRDLVSRY-PTHDKAAGGLLKLG 83 (129)
T ss_dssp HHHHHHHHHTTCHHHHHHHHHHHHHHC-SSSTTHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTSTTHHHHHHHHH
T ss_pred HHHHHHHHHhCCHHHHHHHHHHHHHHC-CCCcccHHHHHHHHHHHHHhccHHHHHHHHHHHHHHC-CCCcccHHHHHHHH
Confidence 345556677788888888888877643 2233 466677778888888888888888877643 233 55677777
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 010383 429 KGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.++...|++++|...|+++.+.
T Consensus 84 ~~~~~~g~~~~A~~~~~~~~~~ 105 (129)
T 2xev_A 84 LSQYGEGKNTEAQQTLQQVATQ 105 (129)
T ss_dssp HHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHH
Confidence 8888888888888888888775
No 180
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.25 E-value=2.1e-06 Score=62.77 Aligned_cols=85 Identities=9% Similarity=0.000 Sum_probs=50.8
Q ss_pred cCCHHHHHHHHHHhhcCC--CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHH
Q 010383 399 SNQLDEAKRFWDDIVWPS--NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAY 476 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~ 476 (512)
.|++++|...|++.++.+ .+.+...+..+..+|...|++++|...|++.++..+. +...+..+..++...|++++|.
T Consensus 3 ~g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 3 LGLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQFPN-HQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ----CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHHHHTCHHHHH
T ss_pred CCcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhCCC-chHHHHHHHHHHHHcCCHHHHH
Confidence 456666666666666542 1233445666666666777777777777766665422 4556666666677777777777
Q ss_pred HHHHHHHH
Q 010383 477 QILREMRK 484 (512)
Q Consensus 477 ~~~~~m~~ 484 (512)
+.+++...
T Consensus 82 ~~~~~al~ 89 (117)
T 3k9i_A 82 ELLLKIIA 89 (117)
T ss_dssp HHHHHHHH
T ss_pred HHHHHHHH
Confidence 77766654
No 181
>1wao_1 Serine/threonine protein phosphatase 5; hydrolase, protein-protein interactions, TPR, super-helix,; 2.9A {Homo sapiens} SCOP: a.118.8.1 d.159.1.3
Probab=98.23 E-value=3.9e-06 Score=78.25 Aligned_cols=117 Identities=10% Similarity=-0.054 Sum_probs=66.2
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHH
Q 010383 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEA 440 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a 440 (512)
+.+.|++++|...|++..+.. +.+...+..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|
T Consensus 16 ~~~~g~~~~A~~~~~~Al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~l~-p~~~~~~~~lg~~~~~~g~~~eA 93 (477)
T 1wao_1 16 YFKAKDYENAIKFYSQAIELN-PSNAIYYGNRSLAYLRTECYGYALGDATRAIELD-KKYIKGYYRRAASNMALGKFRAA 93 (477)
T ss_dssp TTTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHSC-TTCHHHHHHHHHHHHHHTCHHHH
T ss_pred HHHhCCHHHHHHHHHHHHHhC-CccHHHHHHHHHHHHHhcCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHH
Confidence 445566666666666666542 3345566666666666666666666666666553 44555666666666666666666
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHH--HHhcCCHHHHHHHHH
Q 010383 441 VHFLYELVDSGVTPNIVCYNVVIDG--ACKLSMKREAYQILR 480 (512)
Q Consensus 441 ~~~~~~~~~~~~~p~~~~~~~l~~~--~~~~g~~~~a~~~~~ 480 (512)
.+.+++..+.... +...+..+..+ +.+.|++++|.+.++
T Consensus 94 ~~~~~~al~~~p~-~~~~~~~l~~~~~~~~~g~~~~A~~~~~ 134 (477)
T 1wao_1 94 LRDYETVVKVKPH-DKDAKMKYQECNKIVKQKAFERAIAGDE 134 (477)
T ss_dssp HHHHHHHHHHSTT-CTTHHHHHHHHHHHHHHHHHCCC-----
T ss_pred HHHHHHHHHhCCC-CHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence 6666666654311 33344444444 555666666666665
No 182
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.18 E-value=1.9e-05 Score=70.87 Aligned_cols=91 Identities=5% Similarity=-0.084 Sum_probs=66.4
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010383 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464 (512)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 464 (512)
+..+|..+..+|.+.|++++|...++++++.. +.+...+..+..+|...|++++|.+.|++..+... .+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~P-~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIAP-EDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHCT-TCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhCC-CCHHHHHHHHH
Confidence 34567777788888888888888888887654 45667778888888888888888888888877642 25566666777
Q ss_pred HHHhcCCHHHHHH
Q 010383 465 GACKLSMKREAYQ 477 (512)
Q Consensus 465 ~~~~~g~~~~a~~ 477 (512)
.+...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7766666666544
No 183
>3ro3_A PINS homolog, G-protein-signaling modulator 2; asymmetric cell division, protein binding; 1.10A {Mus musculus}
Probab=98.18 E-value=4.3e-06 Score=65.18 Aligned_cols=127 Identities=17% Similarity=0.096 Sum_probs=89.1
Q ss_pred cccccCcHHHHHHHHHHHHhCCCC-CC----hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCC----hhhHHHHHH
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHV-PN----VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPN----SLTYSVLVR 72 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~-~~----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~----~~~~~~l~~ 72 (512)
.+...|++++|+..+++..+.... ++ ..++..+...+...|++++|...+++..+... .++ ..++..+..
T Consensus 18 ~~~~~~~~~~A~~~~~~al~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~l~~ 97 (164)
T 3ro3_A 18 THYLLGNFRDAVIAHEQRLLIAKEFGDKAAERIAYSNLGNAYIFLGEFETASEYYKKTLLLARQLKDRAVEAQSCYSLGN 97 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhcCHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHhCCcHHHHHHHHHHHH
Confidence 356789999999999987765211 11 14788899999999999999999999765310 112 346777788
Q ss_pred HHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHh
Q 010383 73 GVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 73 ~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 129 (512)
.+...|++++|...+.+.++..+...........+..+...+...|++++|.+.+++
T Consensus 98 ~~~~~~~~~~A~~~~~~a~~~~~~~~~~~~~~~~~~~la~~~~~~g~~~~A~~~~~~ 154 (164)
T 3ro3_A 98 TYTLLQDYEKAIDYHLKHLAIAQELKDRIGEGRACWSLGNAYTALGNHDQAMHFAEK 154 (164)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHH
T ss_pred HHHHHhhHHHHHHHHHHHHHHHHHccchHhHHHHHHHHHHHHHHccCHHHHHHHHHH
Confidence 899999999999999888876554433223334555566666666666666665554
No 184
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.16 E-value=2.7e-05 Score=72.30 Aligned_cols=88 Identities=7% Similarity=-0.094 Sum_probs=54.0
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
..|..+..+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++.++.. +-+...+..+..++
T Consensus 318 ~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~~ 395 (457)
T 1kt0_A 318 AAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMCQ 395 (457)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHH
Confidence 456666666666677777777766666543 4455666666666777777777777776666653 12445566666666
Q ss_pred HhcCCHHHHH
Q 010383 467 CKLSMKREAY 476 (512)
Q Consensus 467 ~~~g~~~~a~ 476 (512)
.+.|+++++.
T Consensus 396 ~~~~~~~~a~ 405 (457)
T 1kt0_A 396 KKAKEHNERD 405 (457)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHH
Confidence 6666666554
No 185
>3rkv_A Putative peptidylprolyl isomerase; structural genomics, APC102156, PSI-biology, midwest center structural genomics, MCSG; 2.41A {Caenorhabditis elegans}
Probab=98.14 E-value=2.8e-05 Score=60.55 Aligned_cols=64 Identities=17% Similarity=0.075 Sum_probs=51.3
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
...|..+..+|.+.|++++|...++++++.+ +.+...|..+..+|...|++++|...|++.++.
T Consensus 63 ~~~~~nla~~~~~~~~~~~A~~~~~~al~~~-p~~~~a~~~~g~~~~~~g~~~~A~~~~~~al~l 126 (162)
T 3rkv_A 63 IPLYANMSQCYLNIGDLHEAEETSSEVLKRE-ETNEKALFRRAKARIAAWKLDEAEEDLKLLLRN 126 (162)
T ss_dssp HHHHHHHHHHHHHHTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCcHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHhcHHHHHHHHHHHHhc
Confidence 4567777888888888888888888887764 556778888888888888888888888888776
No 186
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.14 E-value=2.7e-05 Score=58.92 Aligned_cols=104 Identities=12% Similarity=-0.017 Sum_probs=85.1
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCC------C-----hHhHHHHHHHHHhcCChhHHHHHHHHHHhC-----CCCC-Chh
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHVP------N-----VVSYTTLIHGYCRTGEMDVAYKVFDEMRHC-----GVLP-NSL 65 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~------~-----~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~-----~~~~-~~~ 65 (512)
.+.+.|++++|+..|++.++..+.. + ...|+.+..++.+.|++++|+..+++..+. .+.| +..
T Consensus 20 ~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~pd~~~ 99 (159)
T 2hr2_A 20 RQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQDEGK 99 (159)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTSTHHH
T ss_pred HHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCCchHH
Confidence 3567899999999999999874331 1 228999999999999999999999999874 1135 445
Q ss_pred hH----HHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHh
Q 010383 66 TY----SVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAA 106 (512)
Q Consensus 66 ~~----~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~ 106 (512)
.| .....++...|++++|...|.+.++..|++.++.+....
T Consensus 100 A~~~~~~~rG~aL~~lgr~eEAl~~y~kAlel~p~d~~~~~~~~~ 144 (159)
T 2hr2_A 100 LWISAVYSRALALDGLGRGAEAMPEFKKVVEMIEERKGETPGKER 144 (159)
T ss_dssp HHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHCCSCCTTHHH
T ss_pred HHHHHHHhHHHHHHHCCCHHHHHHHHHHHHhcCCCcHHHHHHHHH
Confidence 77 888899999999999999999999999988777776443
No 187
>3k9i_A BH0479 protein; putative protein binding protein, structural genomics, joint for structural genomics, JCSG; 2.71A {Bacillus halodurans}
Probab=98.13 E-value=4.5e-06 Score=60.94 Aligned_cols=86 Identities=14% Similarity=0.122 Sum_probs=48.4
Q ss_pred CChhhHHHHHHHHHhcC--CCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHH
Q 010383 258 KNPTELLNVLVFMLQTQ--CQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEAL 335 (512)
Q Consensus 258 ~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 335 (512)
|++++|+..|+..++.+ -+.+...+..+..++...|++++|+..|++..+.. +.+...+..+..++...|++++|.
T Consensus 4 g~~~~A~~~~~~al~~~~~~p~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~~--p~~~~~~~~l~~~~~~~g~~~~A~ 81 (117)
T 3k9i_A 4 GLEAQAVPYYEKAIASGLQGKDLAECYLGLGSTFRTLGEYRKAEAVLANGVKQF--PNHQALRVFYAMVLYNLGRYEQGV 81 (117)
T ss_dssp ---CCCHHHHHHHHSSCCCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHTCHHHHH
T ss_pred CcHHHHHHHHHHHHHcCCCCccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCchHHHHHHHHHHHHcCCHHHHH
Confidence 44455555555554432 11234455566666666666666666666666554 445566666666666666666666
Q ss_pred HHHHhhcccC
Q 010383 336 NLLYQVMPQR 345 (512)
Q Consensus 336 ~~~~~~~~~~ 345 (512)
..+.+.+...
T Consensus 82 ~~~~~al~~~ 91 (117)
T 3k9i_A 82 ELLLKIIAET 91 (117)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHhC
Confidence 6666655443
No 188
>1kt0_A FKBP51, 51 kDa FK506-binding protein; FKBP-like ppiase, TPR repeats, isomerase; 2.70A {Homo sapiens} SCOP: a.118.8.1 d.26.1.1 d.26.1.1 PDB: 1kt1_A 3o5d_A
Probab=98.13 E-value=3.2e-05 Score=71.73 Aligned_cols=96 Identities=11% Similarity=0.112 Sum_probs=66.4
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010383 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (512)
...|..+..+|.+.|++++|+..+++..+.. +.+...|..+..+|...|++++|...|+++++.. +.+...+..+..+
T Consensus 317 ~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~~g~a~~~~g~~~~A~~~~~~al~l~-P~~~~a~~~l~~~ 394 (457)
T 1kt0_A 317 LAAFLNLAMCYLKLREYTKAVECCDKALGLD-SANEKGLYRRGEAQLLMNEFESAKGDFEKVLEVN-PQNKAARLQISMC 394 (457)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-----CHHHHHHHH
T ss_pred HHHHHHHHHHHHHhcCHHHHHHHHHHHHhcC-CccHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHHH
Confidence 3566777777888888888888888887754 4566777778888888888888888888887654 4455567777777
Q ss_pred HHhcCCHHHHHH-HHHHHH
Q 010383 431 LCRSGKIHEAVH-FLYELV 448 (512)
Q Consensus 431 ~~~~g~~~~a~~-~~~~~~ 448 (512)
+...++.+++.+ .+.+|.
T Consensus 395 ~~~~~~~~~a~~~~~~~~f 413 (457)
T 1kt0_A 395 QKKAKEHNERDRRIYANMF 413 (457)
T ss_dssp HHHHHHHHHHHHHHHHHC-
T ss_pred HHHHHHHHHHHHHHHHHHH
Confidence 777777776653 334443
No 189
>1ihg_A Cyclophilin 40; ppiase immunophilin tetratricopeptide, isomerase; 1.80A {Bos taurus} SCOP: a.118.8.1 b.62.1.1 PDB: 1iip_A
Probab=98.07 E-value=3.6e-05 Score=69.02 Aligned_cols=91 Identities=10% Similarity=-0.005 Sum_probs=68.7
Q ss_pred ChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHH
Q 010383 350 GIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIK 429 (512)
Q Consensus 350 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~ 429 (512)
+...|..+..+|.+.|++++|+..+++..+.. +.+...+..+..+|...|++++|...++++.+.. +.+...+..+..
T Consensus 272 ~~~~~~nla~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~eA~~~l~~Al~l~-P~~~~~~~~l~~ 349 (370)
T 1ihg_A 272 ALSCVLNIGACKLKMSDWQGAVDSCLEALEID-PSNTKALYRRAQGWQGLKEYDQALADLKKAQEIA-PEDKAIQAELLK 349 (370)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHTTC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhccCHHHHHHHHHHHHHhC-chhHHHHHHHHHHHHHccCHHHHHHHHHHHHHhC-CCCHHHHHHHHH
Confidence 34567778888888888888888888888754 4466778888888888888888888888887654 446667777777
Q ss_pred HHHhcCCHHHHHH
Q 010383 430 GLCRSGKIHEAVH 442 (512)
Q Consensus 430 ~~~~~g~~~~a~~ 442 (512)
++...++.+++.+
T Consensus 350 ~~~~~~~~~~a~k 362 (370)
T 1ihg_A 350 VKQKIKAQKDKEK 362 (370)
T ss_dssp HHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 7777766666544
No 190
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.07 E-value=0.0003 Score=66.85 Aligned_cols=136 Identities=10% Similarity=0.023 Sum_probs=93.8
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC--CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC-CHHHHHHH
Q 010383 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN--QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG-KIHEAVHF 443 (512)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~ 443 (512)
++++...++.+.+.. +-+..+|..-..++.+.+ +++++.+.++++.+.+ +.+..+|+.-..++.+.| .++++.+.
T Consensus 89 ~~~eL~~~~~~l~~~-pK~y~aW~hR~w~l~~l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~ 166 (567)
T 1dce_A 89 VKAELGFLESCLRVN-PKSYGTWHHRCWLLSRLPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAF 166 (567)
T ss_dssp HHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTCSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHH
T ss_pred HHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHH
Confidence 677777777777653 445666776666777777 5577777777777665 556777777777777777 77777777
Q ss_pred HHHHHHCCCCCChhhHHHHHHHHHhc--------------CCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCCC
Q 010383 444 LYELVDSGVTPNIVCYNVVIDGACKL--------------SMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRGN 506 (512)
Q Consensus 444 ~~~~~~~~~~p~~~~~~~l~~~~~~~--------------g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g~ 506 (512)
++++++..+. |...|+.....+.+. +.++++.+.++++.... +-|...|..+-.++...|.
T Consensus 167 ~~~~I~~~p~-n~saW~~r~~ll~~l~~~~~~~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~ 241 (567)
T 1dce_A 167 TDSLITRNFS-NYSSWHYRSCLLPQLHPQPDSGPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEP 241 (567)
T ss_dssp HHTTTTTTCC-CHHHHHHHHHHHHHHSCCCCSSSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCC
T ss_pred HHHHHHHCCC-CccHHHHHHHHHHhhcccccccccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCC
Confidence 7777776533 666777766666553 45678888888887642 3356678777777777665
No 191
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=98.05 E-value=1.2e-05 Score=71.39 Aligned_cols=149 Identities=8% Similarity=-0.026 Sum_probs=81.1
Q ss_pred cHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010383 314 DAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393 (512)
Q Consensus 314 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 393 (512)
....+..+...+.+.|++++|...|.+.+... |+... +...++.+++...+. ...|..+.
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~----------~~~~~nla 237 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK----------NPCHLNIA 237 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH----------THHHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH----------HHHHHHHH
Confidence 45566777778888888888888888866432 33221 222333333332221 13677788
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHH-HHhcCCH
Q 010383 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDG-ACKLSMK 472 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~-~~~~g~~ 472 (512)
.+|.+.|++++|...++++++.. +.+...|..+..+|...|++++|...|++.++.... +...+..+... ....+..
T Consensus 238 ~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~p~-~~~a~~~L~~l~~~~~~~~ 315 (338)
T 2if4_A 238 ACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYAPD-DKAIRRELRALAEQEKALY 315 (338)
T ss_dssp HHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC------------------------
T ss_pred HHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHCCC-CHHHHHHHHHHHHHHHHHH
Confidence 88888999999999998888764 556778888888999999999999999888765321 44455555544 2345667
Q ss_pred HHHHHHHHHHHH
Q 010383 473 REAYQILREMRK 484 (512)
Q Consensus 473 ~~a~~~~~~m~~ 484 (512)
+++..+|+.|..
T Consensus 316 ~~a~~~~~~~l~ 327 (338)
T 2if4_A 316 QKQKEMYKGIFK 327 (338)
T ss_dssp ------------
T ss_pred HHHHHHHHHhhC
Confidence 777888888865
No 192
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=98.03 E-value=0.00023 Score=53.47 Aligned_cols=111 Identities=4% Similarity=-0.062 Sum_probs=81.0
Q ss_pred CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh----cCCHHHH
Q 010383 365 RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR----SGKIHEA 440 (512)
Q Consensus 365 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a 440 (512)
+++++|...|++..+.| .++.. |...|...+.+++|.+.|++..+.+ +...+..|...|.. .+++++|
T Consensus 9 ~d~~~A~~~~~~aa~~g-~~~a~----lg~~y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A 80 (138)
T 1klx_A 9 KDLKKAIQYYVKACELN-EMFGC----LSLVSNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKA 80 (138)
T ss_dssp HHHHHHHHHHHHHHHTT-CTTHH----HHHHTCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHH
T ss_pred cCHHHHHHHHHHHHcCC-CHhhh----HHHHHHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHH
Confidence 45677888888777766 33332 6666767777777888888877654 55667777777776 6788888
Q ss_pred HHHHHHHHHCCCCCChhhHHHHHHHHHh----cCCHHHHHHHHHHHHHCC
Q 010383 441 VHFLYELVDSGVTPNIVCYNVVIDGACK----LSMKREAYQILREMRKNG 486 (512)
Q Consensus 441 ~~~~~~~~~~~~~p~~~~~~~l~~~~~~----~g~~~~a~~~~~~m~~~~ 486 (512)
.+.|++..+.| ++..+..|...|.. .+++++|.+++++..+.|
T Consensus 81 ~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 81 AQYYSKACGLN---DQDGCLILGYKQYAGKGVVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp HHHHHHHHHTT---CHHHHHHHHHHHHHTSSSCCCHHHHHHHHHHHHHTT
T ss_pred HHHHHHHHcCC---CHHHHHHHHHHHHCCCCCCcCHHHHHHHHHHHHHCC
Confidence 88888887765 56667777777777 778888888888888766
No 193
>1dce_A Protein (RAB geranylgeranyltransferase alpha subunit); 2.0 A resolution, N-formylmethionine, alpha subunit; HET: FME; 2.00A {Rattus norvegicus} SCOP: a.118.6.1 b.7.4.1 c.10.2.2 PDB: 1ltx_A*
Probab=98.01 E-value=0.00026 Score=67.27 Aligned_cols=174 Identities=9% Similarity=-0.015 Sum_probs=131.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC----------HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc
Q 010383 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR----------IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363 (512)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~----------~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (512)
..++|++.++++.... +.+...|+.--.++...++ ++++++.+++++... +-+..+|+.-.-.+.+
T Consensus 44 ~~eeal~~~~~~l~~n--P~~~taW~~R~~~l~~l~~~~~~~~~~~~~~~eL~~~~~~l~~~--pK~y~aW~hR~w~l~~ 119 (567)
T 1dce_A 44 LDESVLELTSQILGAN--PDFATLWNCRREVLQHLETEKSPEESAALVKAELGFLESCLRVN--PKSYGTWHHRCWLLSR 119 (567)
T ss_dssp CSHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHHHHTTSCHHHHHHHHHHHHHHHHHHHHHC--TTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHC--chhHHHHHHHHHHHHhcccccchhhhhhhHHHHHHHHHHHHHhC--CCCHHHHHHHHHHHHH
Confidence 3467788888888765 5566667666666666666 788888888877554 4556667766666777
Q ss_pred cC--CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC-CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc------
Q 010383 364 LR--RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN-QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS------ 434 (512)
Q Consensus 364 ~~--~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~------ 434 (512)
.+ +++++...++++.+.. +-+...|+.-..++.+.| .++++.+.+.++++.+ +.|...|+.....+.+.
T Consensus 120 l~~~~~~~el~~~~k~l~~d-~~N~~aW~~R~~~l~~l~~~~~~el~~~~~~I~~~-p~n~saW~~r~~ll~~l~~~~~~ 197 (567)
T 1dce_A 120 LPEPNWARELELCARFLEAD-ERNFHCWDYRRFVAAQAAVAPAEELAFTDSLITRN-FSNYSSWHYRSCLLPQLHPQPDS 197 (567)
T ss_dssp CSSCCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTCCCHHHHHHHHHTTTTTT-CCCHHHHHHHHHHHHHHSCCCCS
T ss_pred cccccHHHHHHHHHHHHhhc-cccccHHHHHHHHHHHcCCChHHHHHHHHHHHHHC-CCCccHHHHHHHHHHhhcccccc
Confidence 78 6799999999998865 557778888888888888 8899999999998775 66777888777776653
Q ss_pred --------CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHH
Q 010383 435 --------GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKRE 474 (512)
Q Consensus 435 --------g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~ 474 (512)
+.++++.+.+++.+... +-+...|..+...+.+.+++++
T Consensus 198 ~~~~~~~~~~~~eel~~~~~ai~~~-P~~~saW~y~~~ll~~~~~~~~ 244 (567)
T 1dce_A 198 GPQGRLPENVLLKELELVQNAFFTD-PNDQSAWFYHRWLLGRAEPHDV 244 (567)
T ss_dssp SSCCSSCHHHHHHHHHHHHHHHHHC-SSCSHHHHHHHHHHSCCCCCSC
T ss_pred cccccccHHHHHHHHHHHHHHHhhC-CCCccHHHHHHHHHhcCCCccc
Confidence 55789999999998875 3377889888888877776444
No 194
>2hr2_A Hypothetical protein; alpha-alpha superhelix fold, structural genomics, joint CENT structural genomics, JCSG, protein structure initiative; 2.54A {Chlorobium tepidum} SCOP: a.118.8.8
Probab=98.00 E-value=9.1e-05 Score=56.03 Aligned_cols=94 Identities=14% Similarity=0.046 Sum_probs=61.5
Q ss_pred HHHHHHHhcCCHHHHHHHHHHhhcCCCC-----------CCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC-----CCCC
Q 010383 391 IVIDGLCESNQLDEAKRFWDDIVWPSNI-----------HDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS-----GVTP 454 (512)
Q Consensus 391 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~-----------~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~-----~~~p 454 (512)
.....+.+.|++++|...|++.++.... .+...|..+..++.+.|++++|+..+++.++. .+.|
T Consensus 16 ~~G~~l~~~g~~eeAi~~Y~kAL~l~p~~~~~~a~~~~~~~a~a~~n~g~al~~Lgr~~eAl~~~~kAL~l~n~~~e~~p 95 (159)
T 2hr2_A 16 SDAQRQLVAGEYDEAAANCRRAMEISHTMPPEEAFDHAGFDAFCHAGLAEALAGLRSFDEALHSADKALHYFNRRGELNQ 95 (159)
T ss_dssp HHHHHHHHHTCHHHHHHHHHHHHHHHTTSCTTSCCCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHCCTTS
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHhhCCCCcchhhhhhccchHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhhccccCCC
Confidence 3444445555555555555555432211 01237777788888888888888888887764 1133
Q ss_pred -ChhhH----HHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 455 -NIVCY----NVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 455 -~~~~~----~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
+...| .....++...|++++|+..|++..+
T Consensus 96 d~~~A~~~~~~~rG~aL~~lgr~eEAl~~y~kAle 130 (159)
T 2hr2_A 96 DEGKLWISAVYSRALALDGLGRGAEAMPEFKKVVE 130 (159)
T ss_dssp THHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHhHHHHHHHCCCHHHHHHHHHHHHh
Confidence 45667 7888888888888888888888764
No 195
>2if4_A ATFKBP42; FKBP-like, alpha-beta, TPR-like, alpha, signaling protein; 2.85A {Arabidopsis thaliana}
Probab=97.96 E-value=3.5e-05 Score=68.35 Aligned_cols=150 Identities=14% Similarity=0.047 Sum_probs=89.0
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHH
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAV 357 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l 357 (512)
....+..+...+.+.|++++|+..|++..... |+... +...++..++...+. ...|..+
T Consensus 178 ~a~~~~~~g~~~~~~g~~~~A~~~y~~Al~~~---p~~~~-------~~~~~~~~~~~~~l~-----------~~~~~nl 236 (338)
T 2if4_A 178 AADRRKMDGNSLFKEEKLEEAMQQYEMAIAYM---GDDFM-------FQLYGKYQDMALAVK-----------NPCHLNI 236 (338)
T ss_dssp HHHHHHHHHHHTCSSSCCHHHHHHHHHHHHHS---CHHHH-------HTCCHHHHHHHHHHH-----------THHHHHH
T ss_pred HHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHh---ccchh-------hhhcccHHHHHHHHH-----------HHHHHHH
Confidence 34567778888899999999999999988653 44321 233444445444331 1377888
Q ss_pred HHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHH-HhcCC
Q 010383 358 LRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGL-CRSGK 436 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~-~~~g~ 436 (512)
..+|.+.|++++|...+++..+.. +.+...+..+..+|...|++++|...|+++++.. +.+...+..+.... ...+.
T Consensus 237 a~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~a~~~~g~~~~A~~~l~~al~l~-p~~~~a~~~L~~l~~~~~~~ 314 (338)
T 2if4_A 237 AACLIKLKRYDEAIGHCNIVLTEE-EKNPKALFRRGKAKAELGQMDSARDDFRKAQKYA-PDDKAIRRELRALAEQEKAL 314 (338)
T ss_dssp HHHHHTTTCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHTTC-----------------------
T ss_pred HHHHHHcCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHHHHH
Confidence 889999999999999999998864 5577889999999999999999999999998654 34455566555552 34466
Q ss_pred HHHHHHHHHHHHHC
Q 010383 437 IHEAVHFLYELVDS 450 (512)
Q Consensus 437 ~~~a~~~~~~~~~~ 450 (512)
.+++...|.++...
T Consensus 315 ~~~a~~~~~~~l~~ 328 (338)
T 2if4_A 315 YQKQKEMYKGIFKG 328 (338)
T ss_dssp --------------
T ss_pred HHHHHHHHHHhhCC
Confidence 77888888888765
No 196
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.89 E-value=2.9e-05 Score=58.62 Aligned_cols=87 Identities=14% Similarity=0.067 Sum_probs=50.1
Q ss_pred HccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCH----------HHHHHHHHHhhcCCCCCCHHhHHHHHHHH
Q 010383 362 FRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQL----------DEAKRFWDDIVWPSNIHDNYVYAAMIKGL 431 (512)
Q Consensus 362 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 431 (512)
.+.+.+++|...++...+.. +.+...|..+..++...+++ ++|+..|++.++.+ +.+...|..+..+|
T Consensus 13 ~r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ld-P~~~~A~~~LG~ay 90 (158)
T 1zu2_A 13 DRILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLID-PKKDEAVWCIGNAY 90 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHH
T ss_pred HHHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhC-cCcHHHHHHHHHHH
Confidence 34455666666666666654 44566666666666666543 36666666665543 33445566666666
Q ss_pred HhcC-----------CHHHHHHHHHHHHHC
Q 010383 432 CRSG-----------KIHEAVHFLYELVDS 450 (512)
Q Consensus 432 ~~~g-----------~~~~a~~~~~~~~~~ 450 (512)
...| ++++|++.|++.++.
T Consensus 91 ~~lg~l~P~~~~a~g~~~eA~~~~~kAl~l 120 (158)
T 1zu2_A 91 TSFAFLTPDETEAKHNFDLATQFFQQAVDE 120 (158)
T ss_dssp HHHHHHCCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHhcccCcchhhhhccHHHHHHHHHHHHHh
Confidence 5543 555555555555553
No 197
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.82 E-value=0.00015 Score=52.37 Aligned_cols=78 Identities=15% Similarity=0.020 Sum_probs=43.0
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
+...|++..+.. +.+...+..+..+|...|++++|...+++.++.. +.+...|..+..++...|++++|...|++..+
T Consensus 4 a~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~al~ 81 (115)
T 2kat_A 4 ITERLEAMLAQG-TDNMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESGLA 81 (115)
T ss_dssp HHHHHHHHHTTT-CCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhC-CCcHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 445555555432 3344555555566666666666666666655443 33444555555666666666666666655544
No 198
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.81 E-value=9.4e-05 Score=68.51 Aligned_cols=124 Identities=13% Similarity=0.015 Sum_probs=87.9
Q ss_pred HHccCCHHHHHHHHHHHHhC---CCCC----ChHhHHHHHHHHHhcCCHHHHHHHHHHhhc-----CCC-CC-CHHhHHH
Q 010383 361 LFRLRRVEEAKEVFNCMLGI---GVVA----DSTTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSN-IH-DNYVYAA 426 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~---~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~ 426 (512)
+...|++++|+.++++.++. -+.+ ...+++.|..+|...|++++|..++++.++ .|. .| ...+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 45678888888888777652 1112 234688888888889999988888887652 121 12 2346888
Q ss_pred HHHHHHhcCCHHHHHHHHHHHHH-----CCCC-CC-hhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 427 MIKGLCRSGKIHEAVHFLYELVD-----SGVT-PN-IVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 427 l~~~~~~~g~~~~a~~~~~~~~~-----~~~~-p~-~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
|...|..+|++++|..++++..+ .|.. |+ ..+.+.+..++...|.+++|+.++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 88999999999999998887764 2422 22 23456677778888899999999998875
No 199
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.80 E-value=8.4e-05 Score=53.30 Aligned_cols=64 Identities=13% Similarity=0.126 Sum_probs=38.6
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
...+..+...+...|++++|...+++.++.. +.+...+..+..++...|++++|.+.+++.++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555566666666666666666665543 345555666666666666666666666666654
No 200
>2kat_A Uncharacterized protein; NESG, structure, structural genomics, PSI-2, protein structure initiative; NMR {Bordetella parapertussis}
Probab=97.80 E-value=0.0002 Score=51.81 Aligned_cols=85 Identities=14% Similarity=0.062 Sum_probs=71.9
Q ss_pred HHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHH
Q 010383 11 GEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKL 90 (512)
Q Consensus 11 ~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 90 (512)
++|+..|++..+..+. +...+..+...+...|++++|+..|++..+.. +.+...|..+..++...|++++|...+.++
T Consensus 2 ~~a~~~~~~al~~~p~-~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~~~~~la~~~~~~g~~~~A~~~~~~a 79 (115)
T 2kat_A 2 QAITERLEAMLAQGTD-NMLLRFTLGKTYAEHEQFDAALPHLRAALDFD-PTYSVAWKWLGKTLQGQGDRAGARQAWESG 79 (115)
T ss_dssp CCHHHHHHHHHTTTCC-CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHhCCC-cHHHHHHHHHHHHHccCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHH
Confidence 4688899999887443 68889999999999999999999999998864 345678888999999999999999999988
Q ss_pred HHHhhhc
Q 010383 91 WERMKEE 97 (512)
Q Consensus 91 ~~~~~~~ 97 (512)
++..+..
T Consensus 80 l~~~~~~ 86 (115)
T 2kat_A 80 LAAAQSR 86 (115)
T ss_dssp HHHHHHH
T ss_pred HHhcccc
Confidence 8766544
No 201
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.76 E-value=0.00022 Score=48.73 Aligned_cols=61 Identities=11% Similarity=0.157 Sum_probs=27.1
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.+..+...+...|++++|...+++..+.. +.+...+..+...+...|++++|.+.+++..+
T Consensus 11 ~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~ 71 (91)
T 1na3_A 11 AWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALE 71 (91)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHh
Confidence 33444444444444444444444444432 11333444444444444444444444444443
No 202
>1na3_A Designed protein CTPR2; de novo protein; HET: IPT; 1.55A {Unidentified} SCOP: k.38.1.1 PDB: 2avp_A
Probab=97.71 E-value=0.00029 Score=48.15 Aligned_cols=84 Identities=10% Similarity=0.153 Sum_probs=68.7
Q ss_pred ChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHH
Q 010383 385 DSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVID 464 (512)
Q Consensus 385 ~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~ 464 (512)
+...+..+...+...|++++|...+++..+.. +.+...+..+..++...|++++|...+++..+.. +.+...+..+..
T Consensus 8 ~~~~~~~la~~~~~~~~~~~A~~~~~~a~~~~-~~~~~~~~~l~~~~~~~~~~~~A~~~~~~a~~~~-p~~~~~~~~l~~ 85 (91)
T 1na3_A 8 SAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAWYNLGNAYYKQGDYDEAIEYYQKALELD-PNNAEAKQNLGN 85 (91)
T ss_dssp HHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHccCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHHhhHHHHHHHHHHHHhcC-CCCHHHHHHHHH
Confidence 45678888899999999999999999998764 5577889999999999999999999999998864 235666777766
Q ss_pred HHHhcC
Q 010383 465 GACKLS 470 (512)
Q Consensus 465 ~~~~~g 470 (512)
++.+.|
T Consensus 86 ~~~~~g 91 (91)
T 1na3_A 86 AKQKQG 91 (91)
T ss_dssp HHHHHC
T ss_pred HHHhcC
Confidence 665543
No 203
>2l6j_A TPR repeat-containing protein associated with HSP; tetratricopeptide repeat (TPR), HSP90 CO-factor, protein BIN; NMR {Saccharomyces cerevisiae}
Probab=97.68 E-value=0.00014 Score=52.01 Aligned_cols=64 Identities=11% Similarity=0.090 Sum_probs=40.6
Q ss_pred hhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcC
Q 010383 351 IVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWP 415 (512)
Q Consensus 351 ~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 415 (512)
...+..+...+...|++++|...|++..+.. +.+...+..+..++...|++++|...++++++.
T Consensus 4 ~~~~~~~g~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~ 67 (111)
T 2l6j_A 4 FEKQKEQGNSLFKQGLYREAVHCYDQLITAQ-PQNPVGYSNKAMALIKLGEYTQAIQMCQQGLRY 67 (111)
T ss_dssp HHHHHHHHHHHHTTTCHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTS
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHhcC-CCCHHHHHHHHHHHHHhcCHHHHHHHHHHHHHh
Confidence 3445555666666666777766666666643 345556666666677777777777777766654
No 204
>1klx_A Cysteine rich protein B; structural genomics, helix-turn-helix, right handed super helix, modular structure', hydrolase; 1.95A {Helicobacter pylori} SCOP: a.118.18.1
Probab=97.68 E-value=0.0011 Score=49.72 Aligned_cols=85 Identities=8% Similarity=-0.026 Sum_probs=38.5
Q ss_pred HHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHh----cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHh---
Q 010383 361 LFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCE----SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCR--- 433 (512)
Q Consensus 361 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~----~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~--- 433 (512)
|...+..++|...|++..+.| +...+..|...|.. .+++++|...|++..+.+ +...+..|...|..
T Consensus 35 y~~g~~~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g~~~d~~~A~~~~~~Aa~~g---~~~a~~~Lg~~y~~G~g 108 (138)
T 1klx_A 35 SNSQINKQKLFQYLSKACELN---SGNGCRFLGDFYENGKYVKKDLRKAAQYYSKACGLN---DQDGCLILGYKQYAGKG 108 (138)
T ss_dssp TCTTSCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHCSSSCCCHHHHHHHHHHHHHTT---CHHHHHHHHHHHHHTSS
T ss_pred HHcCCCHHHHHHHHHHHHcCC---CHHHHHHHHHHHHcCCCCCccHHHHHHHHHHHHcCC---CHHHHHHHHHHHHCCCC
Confidence 333334444444444444432 33344444444444 444555555555544432 23344444444444
Q ss_pred -cCCHHHHHHHHHHHHHCC
Q 010383 434 -SGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 434 -~g~~~~a~~~~~~~~~~~ 451 (512)
.+++++|.+.|++..+.|
T Consensus 109 ~~~d~~~A~~~~~~Aa~~g 127 (138)
T 1klx_A 109 VVKNEKQAVKTFEKACRLG 127 (138)
T ss_dssp SCCCHHHHHHHHHHHHHTT
T ss_pred CCcCHHHHHHHHHHHHHCC
Confidence 455555555555555544
No 205
>1zu2_A Mitochondrial import receptor subunit TOM20-3; TPR, tetratricopeptide repeat like, TPR-like, transport protein; NMR {Arabidopsis thaliana} SCOP: a.118.8.1
Probab=97.67 E-value=9.6e-05 Score=55.79 Aligned_cols=99 Identities=9% Similarity=-0.042 Sum_probs=67.5
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCH----------HHHHHHHHHHHHCCCCCChhhHHHHHHHHH
Q 010383 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKI----------HEAVHFLYELVDSGVTPNIVCYNVVIDGAC 467 (512)
Q Consensus 398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~----------~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~ 467 (512)
+.+.+++|.+.++..++.. +.+...|..+..++...+++ ++|+..|++.++.++. +...|..+..+|.
T Consensus 14 r~~~feeA~~~~~~Ai~l~-P~~aea~~n~G~~l~~l~~~~~g~~al~~~~eAi~~le~AL~ldP~-~~~A~~~LG~ay~ 91 (158)
T 1zu2_A 14 RILLFEQIRQDAENTYKSN-PLDADNLTRWGGVLLELSQFHSISDAKQMIQEAITKFEEALLIDPK-KDEAVWCIGNAYT 91 (158)
T ss_dssp HHHHHHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHHHHCTT-CHHHHHHHHHHHH
T ss_pred HHhHHHHHHHHHHHHHHHC-CCCHHHHHHHHHHHHHhcccchhhhhHhHHHHHHHHHHHHHHhCcC-cHHHHHHHHHHHH
Confidence 4456777777777777654 55667777777777766653 4788888777776422 5567777777777
Q ss_pred hcC-----------CHHHHHHHHHHHHHCCCCCChHHHHHHHHh
Q 010383 468 KLS-----------MKREAYQILREMRKNGLNPDAVTWRILDKL 500 (512)
Q Consensus 468 ~~g-----------~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~ 500 (512)
..| ++++|.+.|++..+ +.|+...|..-++.
T Consensus 92 ~lg~l~P~~~~a~g~~~eA~~~~~kAl~--l~P~~~~y~~al~~ 133 (158)
T 1zu2_A 92 SFAFLTPDETEAKHNFDLATQFFQQAVD--EQPDNTHYLKSLEM 133 (158)
T ss_dssp HHHHHCCCHHHHHHHHHHHHHHHHHHHH--HCTTCHHHHHHHHH
T ss_pred HhcccCcchhhhhccHHHHHHHHHHHHH--hCCCCHHHHHHHHH
Confidence 654 77788888887777 56776666555443
No 206
>3n71_A Histone lysine methyltransferase SMYD1; heart development, transcription; HET: SFG MES; 2.30A {Mus musculus}
Probab=97.64 E-value=0.00036 Score=64.62 Aligned_cols=125 Identities=8% Similarity=-0.024 Sum_probs=88.9
Q ss_pred HhhcCCHHHHHHHHHhhcccCC--CCC----ChhhHHHHHHHHHccCCHHHHHHHHHHHHh-----CC--CCCChHhHHH
Q 010383 325 LLNVGRIQEALNLLYQVMPQRG--YSP----GIVTYNAVLRGLFRLRRVEEAKEVFNCMLG-----IG--VVADSTTYAI 391 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~--~~~----~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~-----~~--~~~~~~~~~~ 391 (512)
+...|++++|..++.+.+.... +.| ...+++.|..+|...|++++|+.++++.++ .| .+....+++.
T Consensus 319 ~~~qg~~~eA~~l~~~aL~~~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~n 398 (490)
T 3n71_A 319 ARSEGLYHEVVKLCRECLEKQEPVFADTNLYVLRLLSIASEVLSYLQAYEEASHYARRMVDGYMKLYHHNNAQLGMAVMR 398 (490)
T ss_dssp HHTTTCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCTTCHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHcCCCCHHHHHHHHH
Confidence 4567888888887776654321 122 245678888899999999999988888764 22 1122346888
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhc-----CCC-CC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 392 VIDGLCESNQLDEAKRFWDDIVW-----PSN-IH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
|...|...|++++|..+++++.+ .|. .| ...+.+.+..++...+.+++|..++.++++
T Consensus 399 La~~~~~~G~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~~~~~l~~~~~e~~~~~~ae~~~~~~~~ 463 (490)
T 3n71_A 399 AGLTNWHAGHIEVGHGMICKAYAILLVTHGPSHPITKDLEAMRMQTEMELRMFRQNEFMYHKMRE 463 (490)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHHHHTCTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHCCCHHHHHHHHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999999999998888752 231 12 233556677788888999999999988876
No 207
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.54 E-value=0.00059 Score=47.71 Aligned_cols=62 Identities=11% Similarity=0.045 Sum_probs=29.8
Q ss_pred hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 386 STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 386 ~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
...+..+..+|...|++++|...|+++++.+ +.+...|..+..+|...|++++|.+.+++.+
T Consensus 7 ~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~-p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 7 PFTRYALAQEHLKHDNASRALALFEELVETD-PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC-CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 3444444455555555555555555544432 2333444445555555555555555554443
No 208
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.50 E-value=0.0029 Score=55.16 Aligned_cols=78 Identities=18% Similarity=0.112 Sum_probs=62.0
Q ss_pred CCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHH
Q 010383 418 IHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAVTWRIL 497 (512)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l 497 (512)
+.+..++..+...+...|++++|...+++++..+ |+...|..+...+.-.|++++|.+.+++... +.|...||...
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~Alr--L~P~~~t~~~~ 349 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFN--LRPGANTLYWI 349 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH--HSCSHHHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHh--cCCCcChHHHH
Confidence 5677788888777777899999999999988875 6777777788888889999999999988887 56777776544
Q ss_pred HH
Q 010383 498 DK 499 (512)
Q Consensus 498 ~~ 499 (512)
-.
T Consensus 350 ~~ 351 (372)
T 3ly7_A 350 EN 351 (372)
T ss_dssp HH
T ss_pred hC
Confidence 33
No 209
>3ma5_A Tetratricopeptide repeat domain protein; NESG, structural genomics, PSI-2, protein structure initiative; 2.80A {Salinibacter ruber} PDB: 2kcl_A 2kcv_A
Probab=97.45 E-value=0.00031 Score=49.18 Aligned_cols=63 Identities=16% Similarity=0.141 Sum_probs=35.6
Q ss_pred ChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhc
Q 010383 278 DVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVM 342 (512)
Q Consensus 278 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 342 (512)
+...+..+..++...|++++|+..|++..+.. +.+...|..+..++...|++++|...+.+.+
T Consensus 6 ~~~~~~~lg~~~~~~g~~~~A~~~~~~al~~~--p~~~~a~~~lg~~~~~~g~~~~A~~~~~~al 68 (100)
T 3ma5_A 6 DPFTRYALAQEHLKHDNASRALALFEELVETD--PDYVGTYYHLGKLYERLDRTDDAIDTYAQGI 68 (100)
T ss_dssp CHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS--TTCTHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhC--CCcHHHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 34455555555666666666666666655543 3344455555566666666666666555543
No 210
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.42 E-value=1.1e-05 Score=71.48 Aligned_cols=215 Identities=11% Similarity=0.051 Sum_probs=122.0
Q ss_pred ChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhH
Q 010383 28 NVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAF 107 (512)
Q Consensus 28 ~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~ 107 (512)
|+..|..++....+.|++++-+..+.-.++. ..++..=+.|+-+|++.++..+-++. -..|+..-.
T Consensus 82 Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~--~ke~~IDteLi~ayAk~~rL~elEef------------l~~~N~A~i 147 (624)
T 3lvg_A 82 DPSSYMEVVQAANTSGNWEELVKYLQMARKK--ARESYVETELIFALAKTNRLAELEEF------------INGPNNAHI 147 (624)
T ss_dssp CCCSSSHHHHHTTTSSCCTTHHHHHHTTSTT--CCSTTTTHHHHHHHHTSCSSSTTTST------------TSCCSSSCT
T ss_pred ChHHHHHHHHHHHhCCCHHHHHHHHHHHHHH--hcccccHHHHHHHHHhhCcHHHHHHH------------HcCCCcccH
Confidence 5566778888888888888877777655544 23444555777888887776654321 123455555
Q ss_pred HHHHHHHHccCChhHHHHHHHhcCCCCC--------------------CCcchhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010383 108 ANLVDSLCREGYVNEVFRIAEDMPQGKS--------------------VNEEFACGHMIDSLCRSGRNHGASRVVYVMRK 167 (512)
Q Consensus 108 ~~l~~~~~~~g~~~~a~~~~~~~~~~~~--------------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 167 (512)
..+.+-|...|.++.|.-+|..+..-.. -.++.+|..+..+|...+.+.-|.-.--.+.-
T Consensus 148 q~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVdaArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIv 227 (624)
T 3lvg_A 148 QQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDGARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVV 227 (624)
T ss_dssp HHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTTTTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHC
T ss_pred HHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHHHHhcCChhHHHHHHHHHhCchHHHHHHHhcchhcc
Confidence 5677777777877777777776654221 13455666666677766666665544333332
Q ss_pred cCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCC----
Q 010383 168 RGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDR---- 243 (512)
Q Consensus 168 ~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~---- 243 (512)
.+.-...++..|-..|-+++.+.+++...... ......|+-|.-.|++- .+++..+.++....+-..|.
T Consensus 228 -----hadeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmFTELaILYsKY-~PeKlmEHlklf~sriNipKvira 300 (624)
T 3lvg_A 228 -----HADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMFTELAILYSKF-KPQKMREHLELFWSRVNIPKVLRA 300 (624)
T ss_dssp -----CSSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHHHHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHH
T ss_pred -----cHHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHHHHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHH
Confidence 12223345556666777777777776655321 23455666666666554 44544444443322211111
Q ss_pred ---cccHHHHHHHHHccCChhhH
Q 010383 244 ---TRICNIYLRALCLIKNPTEL 263 (512)
Q Consensus 244 ---~~~~~~l~~~~~~~~~~~~a 263 (512)
...|.-++-.|+...+++.|
T Consensus 301 cE~ahLW~ElvfLY~~ydE~DnA 323 (624)
T 3lvg_A 301 AEQAHLWAELVFLYDKYEEYDNA 323 (624)
T ss_dssp HTTTTCHHHHHHHHHHHTCHHHH
T ss_pred HHHHhhHHHHHHHHhcchhHHHH
Confidence 23445555555555555443
No 211
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=97.30 E-value=0.00073 Score=50.37 Aligned_cols=86 Identities=16% Similarity=0.142 Sum_probs=57.5
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcC---CHHHHHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHHHHH
Q 010383 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSG---KIHEAVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKREAY 476 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~~a~ 476 (512)
+..+.+-|.+....+ +++..+...+.+++++.+ ++++++.++++..+.. .| +...+-.+.-++.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 344555555555544 466667777777777776 5557777777777754 23 3556666777778888888888
Q ss_pred HHHHHHHHCCCCCCh
Q 010383 477 QILREMRKNGLNPDA 491 (512)
Q Consensus 477 ~~~~~m~~~~~~p~~ 491 (512)
+.++.+.+ +.|+.
T Consensus 92 ~y~~~lL~--ieP~n 104 (152)
T 1pc2_A 92 KYVRGLLQ--TEPQN 104 (152)
T ss_dssp HHHHHHHH--HCTTC
T ss_pred HHHHHHHh--cCCCC
Confidence 88888777 56654
No 212
>3lvg_A Clathrin heavy chain 1; SELF assembly, coated PIT, cytoplasmic vesicle, membrane, Ca structural protein; 7.94A {Bos taurus} PDB: 3lvh_A
Probab=97.07 E-value=7.3e-05 Score=66.47 Aligned_cols=247 Identities=12% Similarity=0.078 Sum_probs=166.8
Q ss_pred ChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhH
Q 010383 63 NSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFAC 142 (512)
Q Consensus 63 ~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~ 142 (512)
.+..|+.|..+....+...+|+..+ --.-++..|..++....+.|.+++.++.+...++....| ..=
T Consensus 53 ~p~VWs~LgkAqL~~~~v~eAIdsy-----------IkA~Dps~y~eVi~~A~~~~~~edLv~yL~MaRk~~ke~--~ID 119 (624)
T 3lvg_A 53 EPAVWSQLAKAQLQKGMVKEAIDSY-----------IKADDPSSYMEVVQAANTSGNWEELVKYLQMARKKARES--YVE 119 (624)
T ss_dssp CCCCSSSHHHHTTTSSSCTTTTTSS-----------CCCSCCCSSSHHHHHTTTSSCCTTHHHHHHTTSTTCCST--TTT
T ss_pred CccHHHHHHHHHHccCchHHHHHHH-----------HhCCChHHHHHHHHHHHhCCCHHHHHHHHHHHHHHhccc--ccH
Confidence 6678888999999998888885432 223456678889999999999999999988877764444 344
Q ss_pred HHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCC------------------
Q 010383 143 GHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFG------------------ 204 (512)
Q Consensus 143 ~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~------------------ 204 (512)
+.|+-+|++.++..+-.+++. .||..-...+.+-|...|.++.|.-+|..+....
T Consensus 120 teLi~ayAk~~rL~elEefl~-------~~N~A~iq~VGDrcf~e~lYeAAKilys~isN~akLAstLV~L~~yq~AVda 192 (624)
T 3lvg_A 120 TELIFALAKTNRLAELEEFIN-------GPNNAHIQQVGDRCYDEKMYDAAKLLYNNVSNFGRLASTLVHLGEYQAAVDG 192 (624)
T ss_dssp HHHHHHHHTSCSSSTTTSTTS-------CCSSSCTHHHHHHHHHSCCSTTSSTTGGGSCCCTTTSSSSSSCSGGGSSTTT
T ss_pred HHHHHHHHhhCcHHHHHHHHc-------CCCcccHHHHHHHHHHccCHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHHH
Confidence 578899999988776544332 4677777888888999999998888876542211
Q ss_pred --CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhH
Q 010383 205 --YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITL 282 (512)
Q Consensus 205 --~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~ 282 (512)
-..++.||..+-.+|...+++.-|.-.--.+.-. ..-...++..|-..|.+++.+.+++.-.... +.....|
T Consensus 193 ArKAns~ktWKeV~~ACvd~~EfrLAqicGLniIvh-----adeL~elv~~YE~~G~f~ELIsLlEaglglE-rAHmGmF 266 (624)
T 3lvg_A 193 ARKANSTRTWKEVCFACVDGKEFRLAQMCGLHIVVH-----ADELEELINYYQDRGYFEELITMLEAALGLE-RAHMGMF 266 (624)
T ss_dssp TTTCCSSCSHHHHTHHHHHSCTTTTTTHHHHHHHCC-----SSCCSGGGSSSSTTCCCTTSTTTHHHHTTST-TCCHHHH
T ss_pred HHhcCChhHHHHHHHHHhCchHHHHHHHhcchhccc-----HHHHHHHHHHHHhCCCHHHHHHHHHHHhCCC-chhHHHH
Confidence 1235667887777888877777766554444322 2234456667777888888888887766432 3466777
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCC------cHHHHHHHHHHHhhcCCHHHHHH
Q 010383 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAP------DAVTFTTIIFGLLNVGRIQEALN 336 (512)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~------~~~~~~~l~~~~~~~~~~~~a~~ 336 (512)
+.|.-.|++- ++++..+.++..-.+-.++. ....|..++..|.+..+++.|..
T Consensus 267 TELaILYsKY-~PeKlmEHlklf~sriNipKviracE~ahLW~ElvfLY~~ydE~DnA~l 325 (624)
T 3lvg_A 267 TELAILYSKF-KPQKMREHLELFWSRVNIPKVLRAAEQAHLWAELVFLYDKYEEYDNAII 325 (624)
T ss_dssp HHHHHHHHSS-CTTHHHHHHTTSSSSSCCTTTHHHHTTTTCHHHHHHHHHHHTCHHHHHH
T ss_pred HHHHHHHHhc-CHHHHHHHHHHHHHhccHHHHHHHHHHHhhHHHHHHHHhcchhHHHHHH
Confidence 7777777764 45555555554333221111 23456777777777777777664
No 213
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=97.05 E-value=0.0048 Score=42.12 Aligned_cols=65 Identities=14% Similarity=-0.015 Sum_probs=31.9
Q ss_pred CCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 419 HDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 419 ~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
.|...+..+..++...++ .++|...+++.++.. +-+......+...+.+.|++++|+..|+++.+
T Consensus 4 ~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~ 71 (93)
T 3bee_A 4 VTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLD 71 (93)
T ss_dssp CCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHT
T ss_pred CCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 344444445544443332 455555555555543 11444455555555555555555555555554
No 214
>3ly7_A Transcriptional activator CADC; alpha/beta domain, alpha domain, DNA-binding, transcription regulation, transmembrane; 1.80A {Escherichia coli} PDB: 3lya_A 3ly8_A 3ly9_A
Probab=97.02 E-value=0.0095 Score=52.01 Aligned_cols=74 Identities=15% Similarity=-0.006 Sum_probs=50.3
Q ss_pred CCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHH
Q 010383 383 VADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYN 460 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~ 460 (512)
+.++.+|..+...+...|++++|...+++++..+ |+...|..+...+...|++++|.+.+++.... .|...+|.
T Consensus 274 ~~~a~~~~alal~~l~~gd~d~A~~~l~rAl~Ln--~s~~a~~llG~~~~~~G~~~eA~e~~~~AlrL--~P~~~t~~ 347 (372)
T 3ly7_A 274 NNLSIIYQIKAVSALVKGKTDESYQAINTGIDLE--MSWLNYVLLGKVYEMKGMNREAADAYLTAFNL--RPGANTLY 347 (372)
T ss_dssp TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHC--CCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHH--SCSHHHHH
T ss_pred CcCHHHHHHHHHHHHhCCCHHHHHHHHHHHHhcC--CCHHHHHHHHHHHHHCCCHHHHHHHHHHHHhc--CCCcChHH
Confidence 5566667666666666677777777777777654 56666666677777777777777777777765 44444543
No 215
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=97.01 E-value=0.00096 Score=46.44 Aligned_cols=55 Identities=13% Similarity=0.173 Sum_probs=41.1
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChH-hHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVV-SYTTLIHGYCRTGEMDVAYKVFDEMRHC 58 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 58 (512)
.+.+.|++++|+..|++..+..+. +.. .+..+..++...|++++|...|++..+.
T Consensus 9 ~~~~~~~~~~A~~~~~~al~~~p~-~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 9 ELINQGDIENALQALEEFLQTEPV-GKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHTCHHHHHHHHHHHHHHCSS-THHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHcCCHHHHHHHHHHHHHHCCC-cHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 355678888888888887776332 456 7777888888888888888888888775
No 216
>2kc7_A BFR218_protein; tetratricopeptide repeat, all-alpha, GFT-structural genomics, PSI-2, protein structure initiative; NMR {Bacteroides fragilis}
Probab=96.90 E-value=0.0029 Score=43.88 Aligned_cols=56 Identities=11% Similarity=0.148 Sum_probs=30.7
Q ss_pred HHHHhcCCHHHHHHHHHHhhcCCCCCCHH-hHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 394 DGLCESNQLDEAKRFWDDIVWPSNIHDNY-VYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 394 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~-~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
..+...|++++|...++++++.. +.+.. .+..+..++...|++++|.+.|++.++.
T Consensus 8 ~~~~~~~~~~~A~~~~~~al~~~-p~~~~~~~~~lg~~~~~~~~~~~A~~~~~~al~~ 64 (99)
T 2kc7_A 8 KELINQGDIENALQALEEFLQTE-PVGKDEAYYLMGNAYRKLGDWQKALNNYQSAIEL 64 (99)
T ss_dssp HHHHHHTCHHHHHHHHHHHHHHC-SSTHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHcCCHHHHHHHHHHHHHHC-CCcHHHHHHHHHHHHHHcCCHHHHHHHHHHHHhc
Confidence 34455555666666665555433 33444 5555555555666666666666655554
No 217
>3bee_A Putative YFRE protein; putaive YFRE protein, structural GE PSI-2, protein structure initiative; 2.15A {Vibrio parahaemolyticus rimd 2210633}
Probab=96.86 E-value=0.015 Score=39.66 Aligned_cols=68 Identities=16% Similarity=0.103 Sum_probs=45.5
Q ss_pred CCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 383 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSG 451 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~ 451 (512)
+.++..+..+..++...++ .++|..++++.++.+ +.+......+...+...|++++|+..|+++.+..
T Consensus 3 p~~~~~~~~~a~al~~~~~~~~~~~A~~~l~~AL~~d-p~~~rA~~~lg~~~~~~g~y~~Ai~~w~~~l~~~ 73 (93)
T 3bee_A 3 AVTATQLAAKATTLYYLHKQAMTDEVSLLLEQALQLE-PYNEAALSLIANDHFISFRFQEAIDTWVLLLDSN 73 (93)
T ss_dssp CCCHHHHHHHHHHHHHTTTTCCCHHHHHHHHHHHHHC-TTCHHHHHHHHHHHHHTTCHHHHHHHHHHHHTCC
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCHHHHHHHHHHHHHC-cCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHhhC
Confidence 4455666666666654443 577777777777654 5566667777777777777777777777777653
No 218
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.74 E-value=0.0045 Score=56.33 Aligned_cols=99 Identities=7% Similarity=-0.134 Sum_probs=67.4
Q ss_pred cCCHHHHHHHHHHhhc---CCCCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-hhhHHHHHH
Q 010383 399 SNQLDEAKRFWDDIVW---PSNIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SG-VTPN-IVCYNVVID 464 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~---~~~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~-~~~~~~l~~ 464 (512)
.|++++|..++++.++ .-+.| ...+++.|..+|..+|++++|..++++.++ .| -.|+ ..+++.|..
T Consensus 311 ~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa~ 390 (433)
T 3qww_A 311 YKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLGR 390 (433)
T ss_dssp TSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHHH
T ss_pred ccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHHH
Confidence 4677888888777653 11111 234688888899999999999988888764 23 1333 346888899
Q ss_pred HHHhcCCHHHHHHHHHHHHH---CCCCCChHHHHHH
Q 010383 465 GACKLSMKREAYQILREMRK---NGLNPDAVTWRIL 497 (512)
Q Consensus 465 ~~~~~g~~~~a~~~~~~m~~---~~~~p~~~~~~~l 497 (512)
.|...|++++|+.++++..+ .-+.||......+
T Consensus 391 ~~~~qg~~~eA~~~~~~Al~i~~~~lG~~Hp~~~~l 426 (433)
T 3qww_A 391 LYMGLENKAAGEKALKKAIAIMEVAHGKDHPYISEI 426 (433)
T ss_dssp HHHHTTCHHHHHHHHHHHHHHHHHHTCTTCHHHHHH
T ss_pred HHHhccCHHHHHHHHHHHHHHHHHHcCCCChHHHHH
Confidence 99999999999999888752 2234555444333
No 219
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.74 E-value=0.0086 Score=54.58 Aligned_cols=91 Identities=15% Similarity=0.043 Sum_probs=61.1
Q ss_pred HHHHHhcCCHHHHHHHHHHhhcCC---CCC----CHHhHHHHHHHHHhcCCHHHHHHHHHHHHH-----CC-CCCC-hhh
Q 010383 393 IDGLCESNQLDEAKRFWDDIVWPS---NIH----DNYVYAAMIKGLCRSGKIHEAVHFLYELVD-----SG-VTPN-IVC 458 (512)
Q Consensus 393 ~~~~~~~g~~~~a~~~~~~~~~~~---~~~----~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~p~-~~~ 458 (512)
+..+.+.|++++|..++++..+.. +.| ...+++.++.+|...|++++|..++++.++ .| -.|+ ..+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 334556677777777777775321 111 234677788888888888888888877663 12 1222 345
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 459 YNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 459 ~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
++.|...|...|++++|+.++++..
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al 398 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAF 398 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHH
Confidence 7778888888888888888888765
No 220
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.65 E-value=0.16 Score=50.97 Aligned_cols=100 Identities=12% Similarity=0.022 Sum_probs=54.8
Q ss_pred HHHhcCChhHHHH-HHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHc
Q 010383 38 GYCRTGEMDVAYK-VFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCR 116 (512)
Q Consensus 38 ~~~~~~~~~~a~~-~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 116 (512)
.....+++++|.+ ++..+ |+......++..+.+.|..+.|.++... +. .-......
T Consensus 608 ~~~~~~~~~~a~~~~l~~i------~~~~~~~~~~~~l~~~~~~~~a~~~~~~------------~~-----~~f~~~l~ 664 (814)
T 3mkq_A 608 TLTLRGEIEEAIENVLPNV------EGKDSLTKIARFLEGQEYYEEALNISPD------------QD-----QKFELALK 664 (814)
T ss_dssp HHHHTTCHHHHHHHTGGGC------CCHHHHHHHHHHHHHTTCHHHHHHHCCC------------HH-----HHHHHHHH
T ss_pred HHHHhCCHHHHHHHHHhcC------CchHHHHHHHHHHHhCCChHHheecCCC------------cc-----hheehhhh
Confidence 3345667777755 44111 1122235566666667777766543211 10 11233455
Q ss_pred cCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHH
Q 010383 117 EGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMR 166 (512)
Q Consensus 117 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~ 166 (512)
.|++++|+++.+.+. +...|..+...+.+.++++.|.+.|..+.
T Consensus 665 ~~~~~~A~~~~~~~~------~~~~W~~la~~al~~~~~~~A~~~y~~~~ 708 (814)
T 3mkq_A 665 VGQLTLARDLLTDES------AEMKWRALGDASLQRFNFKLAIEAFTNAH 708 (814)
T ss_dssp HTCHHHHHHHHTTCC------CHHHHHHHHHHHHHTTCHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHhhC------cHhHHHHHHHHHHHcCCHHHHHHHHHHcc
Confidence 677777777765542 34566666777777777777766666554
No 221
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90, transferase-transferase inhibitor; HET: SFG; 1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Probab=96.65 E-value=0.0052 Score=55.91 Aligned_cols=87 Identities=6% Similarity=-0.093 Sum_probs=62.6
Q ss_pred ccCCHHHHHHHHHHHHhC---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhc-----CCC-CC-CHHhHHHHH
Q 010383 363 RLRRVEEAKEVFNCMLGI---GVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVW-----PSN-IH-DNYVYAAMI 428 (512)
Q Consensus 363 ~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~~-~~-~~~~~~~l~ 428 (512)
..|++++|+.++++.++. -+.|+ ..+++.|..+|...|++++|..++++.+. .|. .| ...+++.|.
T Consensus 310 ~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~~~nLa~~y~~~g~~~eA~~~~~~aL~i~~~~lG~~Hp~~a~~l~nLa 389 (433)
T 3qww_A 310 HYKSPSELLEICELSQEKMSSVFEDSNVYMLHMMYQAMGVCLYMQDWEGALKYGQKIIKPYSKHYPVYSLNVASMWLKLG 389 (433)
T ss_dssp TTSCHHHHHHHHHHHHHHHTTTBCTTSHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHHHHHHH
T ss_pred hccCHHHHHHHHHHHHHHhhCccChhchHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHcCCCChHHHHHHHHHH
Confidence 356788888888777651 11222 34688888899999999999888888752 221 22 234688899
Q ss_pred HHHHhcCCHHHHHHHHHHHHH
Q 010383 429 KGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~ 449 (512)
..|..+|++++|..++++..+
T Consensus 390 ~~~~~qg~~~eA~~~~~~Al~ 410 (433)
T 3qww_A 390 RLYMGLENKAAGEKALKKAIA 410 (433)
T ss_dssp HHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHhccCHHHHHHHHHHHHH
Confidence 999999999999999988764
No 222
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.57 E-value=0.12 Score=37.12 Aligned_cols=140 Identities=16% Similarity=0.152 Sum_probs=95.7
Q ss_pred HhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHH
Q 010383 290 CKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEE 369 (512)
Q Consensus 290 ~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 369 (512)
.-.|..++..++..+... +.+..-++.++.-....-+-+-..++++..-+-. |. ..+|+...
T Consensus 18 ildG~v~qGveii~k~~~----ssni~E~NW~ICNiiD~a~C~y~v~vLd~IGkiF----Di----------s~C~NlKr 79 (172)
T 1wy6_A 18 LLDGYIDEGVKIVLEITK----SSTKSEYNWFICNLLESIDCRYMFQVLDKIGSYF----DL----------DKCQNLKS 79 (172)
T ss_dssp HHTTCHHHHHHHHHHHHH----HSCHHHHTHHHHHHHHHCCHHHHHHHHHHHGGGS----CG----------GGCSCTHH
T ss_pred HHhhhHHHHHHHHHHHcC----CCCccccceeeeecchhhchhHHHHHHHHHhhhc----Cc----------HhhhcHHH
Confidence 345888888888888876 4456667777777777777777777666643222 21 23444444
Q ss_pred HHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 370 AKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
...-+-.+ ..+......-++.+...|.-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.+.-+
T Consensus 80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 44444332 234555666777788888888888888886543 377788888888889999998899998888888
Q ss_pred CCCC
Q 010383 450 SGVT 453 (512)
Q Consensus 450 ~~~~ 453 (512)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 8754
No 223
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND domain, zinc finger MYND domain-containin 1, structural genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A* 3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Probab=96.55 E-value=0.0098 Score=54.21 Aligned_cols=92 Identities=12% Similarity=0.009 Sum_probs=65.6
Q ss_pred HHHHHccCCHHHHHHHHHHHHhC---CCCCC----hHhHHHHHHHHHhcCCHHHHHHHHHHhhc-----CC-CCC-CHHh
Q 010383 358 LRGLFRLRRVEEAKEVFNCMLGI---GVVAD----STTYAIVIDGLCESNQLDEAKRFWDDIVW-----PS-NIH-DNYV 423 (512)
Q Consensus 358 ~~~~~~~~~~~~a~~~~~~~~~~---~~~~~----~~~~~~l~~~~~~~g~~~~a~~~~~~~~~-----~~-~~~-~~~~ 423 (512)
+..+.+.|++++|+.++++..+. -+.|+ ..+++.|..+|...|++++|..++++++. .| ..| ...+
T Consensus 294 ie~~~~~g~~~~a~~~~~~~L~~~~~~lg~~h~~~~~~~~~L~~~y~~~g~~~eA~~~~~~~L~i~~~~lg~~Hp~~a~~ 373 (429)
T 3qwp_A 294 IEELKAHWKWEQVLAMCQAIISSNSERLPDINIYQLKVLDCAMDACINLGLLEEALFYGTRTMEPYRIFFPGSHPVRGVQ 373 (429)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHTCSSCCCCTTSHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHHSCSSCHHHHHH
T ss_pred HHHHHhhccHHHHHHHHHHHHHhccCcCCccchHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHhHHHHcCCCChHHHHH
Confidence 34455678888888888888752 11222 34678888888889999999888887752 11 122 2346
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 424 YAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 424 ~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
++.|...|..+|++++|..++++..+
T Consensus 374 l~nLa~~~~~~g~~~eA~~~~~~Al~ 399 (429)
T 3qwp_A 374 VMKVGKLQLHQGMFPQAMKNLRLAFD 399 (429)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhcCCHHHHHHHHHHHHH
Confidence 88888999999999999999887764
No 224
>3mkq_A Coatomer beta'-subunit; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae} PDB: 2ynp_A
Probab=96.54 E-value=0.2 Score=50.27 Aligned_cols=128 Identities=17% Similarity=0.114 Sum_probs=70.2
Q ss_pred HHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHH
Q 010383 283 NTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLF 362 (512)
Q Consensus 283 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 362 (512)
..++..+.+.|.++.|.++.+. +.. -.......|++++|.++... ..+...|..+...+.
T Consensus 633 ~~~~~~l~~~~~~~~a~~~~~~--------~~~-----~f~~~l~~~~~~~A~~~~~~-------~~~~~~W~~la~~al 692 (814)
T 3mkq_A 633 TKIARFLEGQEYYEEALNISPD--------QDQ-----KFELALKVGQLTLARDLLTD-------ESAEMKWRALGDASL 692 (814)
T ss_dssp HHHHHHHHHTTCHHHHHHHCCC--------HHH-----HHHHHHHHTCHHHHHHHHTT-------CCCHHHHHHHHHHHH
T ss_pred HHHHHHHHhCCChHHheecCCC--------cch-----heehhhhcCCHHHHHHHHHh-------hCcHhHHHHHHHHHH
Confidence 5566666667777776655421 111 12334556777777776533 135567777777777
Q ss_pred ccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHH
Q 010383 363 RLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVH 442 (512)
Q Consensus 363 ~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~ 442 (512)
+.++++.|++.|..+.. |..+...|...|+.+...++-+.....+ -++.-..+|.+.|++++|.+
T Consensus 693 ~~~~~~~A~~~y~~~~d---------~~~l~~l~~~~~~~~~~~~~~~~a~~~~------~~~~A~~~~~~~g~~~~a~~ 757 (814)
T 3mkq_A 693 QRFNFKLAIEAFTNAHD---------LESLFLLHSSFNNKEGLVTLAKDAETTG------KFNLAFNAYWIAGDIQGAKD 757 (814)
T ss_dssp HTTCHHHHHHHHHHHTC---------HHHHHHHHHHTTCHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHH
T ss_pred HcCCHHHHHHHHHHccC---------hhhhHHHHHHcCCHHHHHHHHHHHHHcC------chHHHHHHHHHcCCHHHHHH
Confidence 77777777777776643 3344444555555555555544444333 12233334444555555555
Q ss_pred HHH
Q 010383 443 FLY 445 (512)
Q Consensus 443 ~~~ 445 (512)
++.
T Consensus 758 ~~~ 760 (814)
T 3mkq_A 758 LLI 760 (814)
T ss_dssp HHH
T ss_pred HHH
Confidence 543
No 225
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=96.52 E-value=0.024 Score=40.61 Aligned_cols=89 Identities=13% Similarity=0.108 Sum_probs=57.7
Q ss_pred cCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHH---HHHHHHHHHHCCCCC--ChhhHHHHHHHHHhcCCHH
Q 010383 399 SNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHE---AVHFLYELVDSGVTP--NIVCYNVVIDGACKLSMKR 473 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~p--~~~~~~~l~~~~~~~g~~~ 473 (512)
...+..+.+-|.+....+ .++..+-..+.+++++..+... ++.++..+.+.+ .| .....-.|.-++.+.|+++
T Consensus 14 ~~~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~ 91 (126)
T 1nzn_A 14 VEDLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYE 91 (126)
T ss_dssp HHHHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHH
T ss_pred HHHHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHH
Confidence 334445555555554444 3666666667777777766555 777777776653 23 3445566777788888888
Q ss_pred HHHHHHHHHHHCCCCCCh
Q 010383 474 EAYQILREMRKNGLNPDA 491 (512)
Q Consensus 474 ~a~~~~~~m~~~~~~p~~ 491 (512)
+|.+.++.+++ +.|+.
T Consensus 92 ~A~~~~~~lL~--~eP~n 107 (126)
T 1nzn_A 92 KALKYVRGLLQ--TEPQN 107 (126)
T ss_dssp HHHHHHHHHHH--HCTTC
T ss_pred HHHHHHHHHHH--hCCCC
Confidence 88888888877 46653
No 226
>1wy6_A Hypothetical protein ST1625; helical repeat protein, structural genomics, unknown function; 2.20A {Sulfolobus tokodaii} SCOP: a.118.20.1
Probab=96.51 E-value=0.13 Score=36.88 Aligned_cols=141 Identities=15% Similarity=0.089 Sum_probs=95.9
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010383 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
..-.|..++..+++.+..... +..-||.++--....-+-+-..++++..-+ -.|. ..+|++..
T Consensus 17 ~ildG~v~qGveii~k~~~ss----ni~E~NW~ICNiiD~a~C~y~v~vLd~IGk---iFDi----------s~C~NlKr 79 (172)
T 1wy6_A 17 FLLDGYIDEGVKIVLEITKSS----TKSEYNWFICNLLESIDCRYMFQVLDKIGS---YFDL----------DKCQNLKS 79 (172)
T ss_dssp HHHTTCHHHHHHHHHHHHHHS----CHHHHTHHHHHHHHHCCHHHHHHHHHHHGG---GSCG----------GGCSCTHH
T ss_pred HHHhhhHHHHHHHHHHHcCCC----CccccceeeeecchhhchhHHHHHHHHHhh---hcCc----------HhhhcHHH
Confidence 344677777777777755433 344455555444444455555555555433 1121 23455555
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRK 484 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~ 484 (512)
....+-.+ ..+....+.-+..+..+|+-+.-.+++..+... .+|++...-.+..+|.+.|+..+|.+++.++.+
T Consensus 80 Vi~C~~~~-----n~~se~vd~ALd~lv~~~KkDqLdki~~~~l~n-~~~~~~~l~kia~Ay~Klg~~r~a~eLl~~AC~ 153 (172)
T 1wy6_A 80 VVECGVIN-----NTLNEHVNKALDILVIQGKRDKLEEIGREILKN-NEVSASILVAIANALRRVGDERDATTLLIEACK 153 (172)
T ss_dssp HHHHHHHT-----TCCCHHHHHHHHHHHHTTCHHHHHHHHHHHC---CCSCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHh-----cchHHHHHHHHHHHHHhccHhHHHHHHHHHhcc-CCCChHHHHHHHHHHHHhcchhhHHHHHHHHHH
Confidence 55555544 234456777788899999999999999987553 478899999999999999999999999999999
Q ss_pred CCCC
Q 010383 485 NGLN 488 (512)
Q Consensus 485 ~~~~ 488 (512)
.|++
T Consensus 154 kG~k 157 (172)
T 1wy6_A 154 KGEK 157 (172)
T ss_dssp TTCH
T ss_pred hhhH
Confidence 9965
No 227
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=96.49 E-value=0.034 Score=38.88 Aligned_cols=63 Identities=8% Similarity=0.082 Sum_probs=30.2
Q ss_pred HhHHHHHHHHHhcCCHHHHHHHHHHhhcCC------CCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 387 TTYAIVIDGLCESNQLDEAKRFWDDIVWPS------NIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 387 ~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~------~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
.-+..|...+...|++..|...++.+.+.. ..+...++..|..++.+.|++++|...++++.+
T Consensus 6 ~dc~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 6 EDCFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 334445555555555555555555544210 112333444555555555555555555555544
No 228
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.32 E-value=0.24 Score=37.95 Aligned_cols=130 Identities=11% Similarity=0.083 Sum_probs=93.6
Q ss_pred HHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC
Q 010383 322 IFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ 401 (512)
Q Consensus 322 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 401 (512)
.....+.|+++.|.++..+. .+...|..|.......|+++-|+..|..... +..+.-.|...|+
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~D---------~~~L~~Ly~~tg~ 75 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQHS---------FDKLSFLYLVTGD 75 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTTC---------HHHHHHHHHHHTC
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhCC---------HHHHHHHHHHhCC
Confidence 44567889999999987662 4678999999999999999999999987654 4556667777888
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (512)
.++..++-+.....| -++.-...+...|+++++.+++.+. |..|. -.......|..+.|.++.+.
T Consensus 76 ~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~---~r~~e------A~~~A~t~g~~~~a~~~~~~ 140 (177)
T 3mkq_B 76 VNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEG---GSLPL------AYAVAKANGDEAAASAFLEQ 140 (177)
T ss_dssp HHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHT---TCHHH------HHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHC---CChHH------HHHHHHHcCcHHHHHHHHHH
Confidence 888877777666554 3555566677889999999988543 32221 11122235677778888776
Q ss_pred H
Q 010383 482 M 482 (512)
Q Consensus 482 m 482 (512)
+
T Consensus 141 ~ 141 (177)
T 3mkq_B 141 A 141 (177)
T ss_dssp T
T ss_pred h
Confidence 5
No 229
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=96.27 E-value=1.1 Score=44.76 Aligned_cols=27 Identities=19% Similarity=0.378 Sum_probs=23.0
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHh
Q 010383 31 SYTTLIHGYCRTGEMDVAYKVFDEMRH 57 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~ 57 (512)
-|..+++.+.+.++.+.+.++|.+...
T Consensus 232 dy~~a~~~ai~LnD~~li~~if~~l~~ 258 (963)
T 4ady_A 232 DYLTLNKVVVNLNDAGLALQLFKKLKE 258 (963)
T ss_dssp CHHHHHHHHHHHTCHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHcCCHHHHHHHHHHHHh
Confidence 377788888899999999999999874
No 230
>1pc2_A Mitochondria fission protein; unknown function; NMR {Homo sapiens} SCOP: a.118.8.1
Probab=96.25 E-value=0.04 Score=41.10 Aligned_cols=82 Identities=11% Similarity=0.107 Sum_probs=58.8
Q ss_pred HHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC---CHHHHHHHHHHhhcCCCCC--CHHhHHHHHHHHHhcCCHHHHH
Q 010383 367 VEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN---QLDEAKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEAV 441 (512)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g---~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a~ 441 (512)
...+.+-|.+....+ +++..+...+..++.+.+ +.+++..++++..+.+ .| +...+-.|.-+|.+.|++++|.
T Consensus 14 l~~~~~~y~~e~~~~-~~~~~~~F~ya~~Lv~S~~~~~~~~gI~lLe~ll~~~-~p~~~rd~lY~LAv~~~kl~~Y~~A~ 91 (152)
T 1pc2_A 14 LLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRSKYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKAL 91 (152)
T ss_dssp HHHHHHHHHHHHHTT-CCCHHHHHHHHHHHHTCSSHHHHHHHHHHHHHHHHHS-CHHHHHHHHHHHHHHHHHTSCHHHHH
T ss_pred HHHHHHHHHHHHccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CccchHHHHHHHHHHHHHccCHHHHH
Confidence 445566666666655 467777777777888877 5668888888887654 23 3456666777888888888888
Q ss_pred HHHHHHHHC
Q 010383 442 HFLYELVDS 450 (512)
Q Consensus 442 ~~~~~~~~~ 450 (512)
+.++.+.+.
T Consensus 92 ~y~~~lL~i 100 (152)
T 1pc2_A 92 KYVRGLLQT 100 (152)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHhc
Confidence 888888875
No 231
>3mkq_B Coatomer subunit alpha; beta-propeller, alpha-solenoid, transport protein; 2.50A {Saccharomyces cerevisiae}
Probab=96.23 E-value=0.28 Score=37.64 Aligned_cols=130 Identities=14% Similarity=0.120 Sum_probs=87.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccC
Q 010383 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLR 365 (512)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~ 365 (512)
.....+.|+++.|.++.+.+ .+...|..+.......|+++-|.+.|.+.- -+..+.-.|.-.|
T Consensus 12 F~LAL~lg~l~~A~e~a~~l-------~~~~~Wk~Lg~~AL~~gn~~lAe~cy~~~~----------D~~~L~~Ly~~tg 74 (177)
T 3mkq_B 12 FDLALEYGNLDAALDEAKKL-------NDSITWERLIQEALAQGNASLAEMIYQTQH----------SFDKLSFLYLVTG 74 (177)
T ss_dssp HHHHHHTTCHHHHHHHHHHH-------CCHHHHHHHHHHHHHTTCHHHHHHHHHHTT----------CHHHHHHHHHHHT
T ss_pred HHHHHhcCCHHHHHHHHHHh-------CCHHHHHHHHHHHHHcCChHHHHHHHHHhC----------CHHHHHHHHHHhC
Confidence 44456779999999887654 578889999999999999999999887731 3444555566778
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHH
Q 010383 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLY 445 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~ 445 (512)
+.+....+-+.....| -++.-...+...|+++++.+++.+..+ .|... -.....|-.+.|.++..
T Consensus 75 ~~e~L~kla~iA~~~g------~~n~af~~~l~lGdv~~~i~lL~~~~r---~~eA~------~~A~t~g~~~~a~~~~~ 139 (177)
T 3mkq_B 75 DVNKLSKMQNIAQTRE------DFGSMLLNTFYNNSTKERSSIFAEGGS---LPLAY------AVAKANGDEAAASAFLE 139 (177)
T ss_dssp CHHHHHHHHHHHHHTT------CHHHHHHHHHHHTCHHHHHHHHHHTTC---HHHHH------HHHHHTTCHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHCc------cHHHHHHHHHHcCCHHHHHHHHHHCCC---hHHHH------HHHHHcCcHHHHHHHHH
Confidence 8877776666555544 145555666778999999998876532 12111 11122466677777766
Q ss_pred HH
Q 010383 446 EL 447 (512)
Q Consensus 446 ~~ 447 (512)
++
T Consensus 140 ~~ 141 (177)
T 3mkq_B 140 QA 141 (177)
T ss_dssp HT
T ss_pred Hh
Confidence 54
No 232
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.17 E-value=0.047 Score=45.65 Aligned_cols=106 Identities=9% Similarity=0.111 Sum_probs=70.2
Q ss_pred HHHHHHHHHHHHhCCCCCC---hHhHHHHHHHHHhc-----CCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhc-CCH
Q 010383 367 VEEAKEVFNCMLGIGVVAD---STTYAIVIDGLCES-----NQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRS-GKI 437 (512)
Q Consensus 367 ~~~a~~~~~~~~~~~~~~~---~~~~~~l~~~~~~~-----g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~ 437 (512)
...|...+++..+. .|+ ...|..+...|... |+.++|.+.|++.++.+...+..++..+.+.++.. |+.
T Consensus 179 l~~A~a~lerAleL--DP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~ 256 (301)
T 3u64_A 179 VHAAVMMLERACDL--WPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNR 256 (301)
T ss_dssp HHHHHHHHHHHHHH--CTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCH
T ss_pred HHHHHHHHHHHHHh--CCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCH
Confidence 45677777777764 344 45677788888773 88888888888887754222466777777777774 888
Q ss_pred HHHHHHHHHHHHCCCC--CChhhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010383 438 HEAVHFLYELVDSGVT--PNIVCYNVVIDGACKLSMKREAYQILREM 482 (512)
Q Consensus 438 ~~a~~~~~~~~~~~~~--p~~~~~~~l~~~~~~~g~~~~a~~~~~~m 482 (512)
+++.+.+++.+...+. |+....+.+ .-++|..++.+.
T Consensus 257 ~~a~~~L~kAL~a~p~~~P~~~lan~~--------~q~eA~~LL~~~ 295 (301)
T 3u64_A 257 AGFDEALDRALAIDPESVPHNKLLVIL--------SQKRARWLKAHV 295 (301)
T ss_dssp HHHHHHHHHHHHCCGGGCSSCHHHHHH--------HHHHHHHHHHTH
T ss_pred HHHHHHHHHHHcCCCCCCCChhHHHHH--------HHHHHHHHHHHh
Confidence 8888888888877655 554333322 234555555544
No 233
>3u64_A Protein TP_0956; tetratrico peptide repeat, protein-prote interaction, syphilis, lipoprotein, transport protein; 2.30A {Treponema pallidum subsp} PDB: 4di3_A 4di4_A*
Probab=96.10 E-value=0.054 Score=45.32 Aligned_cols=96 Identities=14% Similarity=0.076 Sum_probs=61.6
Q ss_pred HHHHHHHHHhhcccCCCCCChhhHHHHHHHHHcc-----CCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhc-CCHHH
Q 010383 331 IQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRL-----RRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCES-NQLDE 404 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-----~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~-g~~~~ 404 (512)
...|...+++.++-..--.+...|..+...|.+. |+.++|.+.|++.++.+..-+..++....+.++.. |+.+.
T Consensus 179 l~~A~a~lerAleLDP~~~~GsA~~~LG~lY~~vPp~~gGd~ekA~~~ferAL~LnP~~~id~~v~YA~~l~~~~gd~~~ 258 (301)
T 3u64_A 179 VHAAVMMLERACDLWPSYQEGAVWNVLTKFYAAAPESFGGGMEKAHTAFEHLTRYCSAHDPDHHITYADALCIPLNNRAG 258 (301)
T ss_dssp HHHHHHHHHHHHHHCTTHHHHHHHHHHHHHHHHSCTTTTCCHHHHHHHHHHHHHHCCTTCSHHHHHHHHHTTTTTTCHHH
T ss_pred HHHHHHHHHHHHHhCCCcccCHHHHHHHHHHHhCCCccCCCHHHHHHHHHHHHHhCCCCCchHHHHHHHHHHHhcCCHHH
Confidence 4566666766654432222355677777777774 78888888888888753212366677777777774 78888
Q ss_pred HHHHHHHhhcCCCC--CCHHhHHH
Q 010383 405 AKRFWDDIVWPSNI--HDNYVYAA 426 (512)
Q Consensus 405 a~~~~~~~~~~~~~--~~~~~~~~ 426 (512)
+.+.+++.+..... |+....+.
T Consensus 259 a~~~L~kAL~a~p~~~P~~~lan~ 282 (301)
T 3u64_A 259 FDEALDRALAIDPESVPHNKLLVI 282 (301)
T ss_dssp HHHHHHHHHHCCGGGCSSCHHHHH
T ss_pred HHHHHHHHHcCCCCCCCChhHHHH
Confidence 88888888766544 55444443
No 234
>2v5f_A Prolyl 4-hydroxylase subunit alpha-1; endoplasmic reticulum, metal-binding, oxidoreductase; 2.03A {Homo sapiens} PDB: 1tjc_A
Probab=95.86 E-value=0.061 Score=37.51 Aligned_cols=62 Identities=6% Similarity=-0.046 Sum_probs=25.4
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhcccCC-----CCCChhhHHHHHHHHHccCCHHHHHHHHHHHHh
Q 010383 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRG-----YSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLG 379 (512)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~-----~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 379 (512)
+..+...+.+.+++..|..+|...+.... -.+....+..+..++.+.|+++.|...++++.+
T Consensus 8 c~~lG~~~~~~~~y~~A~~W~~~Al~~~~~~~~~~~~~~~i~~~L~~~~~~~g~~~~A~~~~~~al~ 74 (104)
T 2v5f_A 8 CFELGKVAYTEADYYHTELWMEQALRQLDEGEISTIDKVSVLDYLSYAVYQQGDLDKALLLTKKLLE 74 (104)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHHHHHTTCCCSSCHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHccchHHHHHHHHHHHHhhhccCCCcccHHHHHHHHHHHHHHccCHHHHHHHHHHHHh
Confidence 33444444444444444444444332210 011223334444444444444444444444443
No 235
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.85 E-value=0.086 Score=38.79 Aligned_cols=51 Identities=8% Similarity=-0.016 Sum_probs=29.3
Q ss_pred CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCC
Q 010383 435 GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNG 486 (512)
Q Consensus 435 g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~ 486 (512)
++.++|.++|+.+++.+-.- ...|.....--.+.|+...|.+++.+....+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 56666666666665542222 4455555555556666666666666666544
No 236
>4h7y_A Dual specificity protein kinase TTK; mitotic checkpoint kinase, chromosome instability, cancer, tetratricopeptide repeat (TPR) motif; 1.80A {Homo sapiens} PDB: 4h7x_A
Probab=95.67 E-value=0.29 Score=36.06 Aligned_cols=51 Identities=8% Similarity=0.063 Sum_probs=31.4
Q ss_pred CChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC
Q 010383 258 KNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGK 309 (512)
Q Consensus 258 ~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 309 (512)
+++++|.++|..+++..-.. ...|....+.-.+.|+...|.+++......+
T Consensus 74 ~D~d~aR~vy~~a~~~hKkF-AKiwi~~AqFEiRqgnl~kARkILg~AiG~~ 124 (161)
T 4h7y_A 74 QEPDDARDYFQMARANCKKF-AFVHISFAQFELSQGNVKKSKQLLQKAVERG 124 (161)
T ss_dssp HCGGGCHHHHHHHHHHCTTB-HHHHHHHHHHHHHTTCHHHHHHHHHHHHHTT
T ss_pred cCHHHHHHHHHHHHHHhHHH-HHHHHHHHHHHHHcccHHHHHHHHHHHhccC
Confidence 56666666666665543222 4555555555566777777777777777654
No 237
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.35 E-value=1 Score=41.11 Aligned_cols=166 Identities=6% Similarity=-0.017 Sum_probs=90.2
Q ss_pred HHHHHHHHccCChhhHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhh---CCCCCCc--HHH
Q 010383 248 NIYLRALCLIKNPTELLNVLVFMLQTQCQPD-----VITLNTVINGFCKMGRIEEALKVLNDMVA---GKFCAPD--AVT 317 (512)
Q Consensus 248 ~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~---~~~~~~~--~~~ 317 (512)
..+...+...|++.+|..++..+...-...+ ...+...++.|...+++..|..++.++.. ....+|+ ...
T Consensus 141 ~~La~i~e~~g~~~eA~~iL~~l~~Et~~~~~~~~kve~~l~q~rl~l~~~d~~~a~~~~~ki~~~~~~~~~~~~lk~~~ 220 (445)
T 4b4t_P 141 KDLVEIKKEEGKIDEAADILCELQVETYGSMEMSEKIQFILEQMELSILKGDYSQATVLSRKILKKTFKNPKYESLKLEY 220 (445)
T ss_dssp HHHHHHHHHHTCHHHHHHHHHHHHHHHCSSSCHHHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHSSCCHHHHHHH
T ss_pred HHHHHHHHHccCHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhhcccCCcHHHHHHH
Confidence 4456666677777777777776653211111 23556667788888999888888887642 1111222 234
Q ss_pred HHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHH----HHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHH
Q 010383 318 FTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLR----GLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVI 393 (512)
Q Consensus 318 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~----~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~ 393 (512)
+...+..+...+++.+|...|.+.........+...+..++. +..-.+..+.-..+.........-++...|..++
T Consensus 221 ~~~~~~~~~~e~~y~~a~~~y~e~~~~~~~~~d~~~~~~~L~~~v~~~iLa~~~~~~~~ll~~~~~~~~~~~l~~~~~L~ 300 (445)
T 4b4t_P 221 YNLLVKISLHKREYLEVAQYLQEIYQTDAIKSDEAKWKPVLSHIVYFLVLSPYGNLQNDLIHKIQNDNNLKKLESQESLV 300 (445)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSSCSSTTHHHHHSHHHHSSCHHHHHHHHHH
T ss_pred HHHHHHHHHHhhhHHHHHHHHHHHHhcccccCCHHHHHHHHHHHHHHHHhCCCCchHHHHHHHHhhcccccccHHHHHHH
Confidence 566677778888888888888776644333333332222211 1111211112222222222211234556777788
Q ss_pred HHHHhc--CCHHHHHHHHHHhh
Q 010383 394 DGLCES--NQLDEAKRFWDDIV 413 (512)
Q Consensus 394 ~~~~~~--g~~~~a~~~~~~~~ 413 (512)
.+|... .+++.+.+.|....
T Consensus 301 k~f~~~~L~~~~~~~~~~~~~L 322 (445)
T 4b4t_P 301 KLFTTNELMRWPIVQKTYEPVL 322 (445)
T ss_dssp HHHHHCCSSSHHHHHHHTCSST
T ss_pred HHHHhchHhhhHHHHHHHHHHh
Confidence 887654 35566666555443
No 238
>4b4t_P 26S proteasome regulatory subunit RPN5; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=95.14 E-value=0.68 Score=42.33 Aligned_cols=53 Identities=17% Similarity=0.228 Sum_probs=27.2
Q ss_pred CChhhHHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCChhHHHHHHHhc
Q 010383 78 RDVERANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGYVNEVFRIAEDM 130 (512)
Q Consensus 78 ~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 130 (512)
++++.|.+.+..+.++.....+...+......++..|...|+++...+.+..+
T Consensus 30 ~~~~~a~e~ll~lEK~~r~~~d~~s~~r~l~~iv~l~~~~~~~~~l~e~i~~L 82 (445)
T 4b4t_P 30 NDCNSALDQLLVLEKKTRQASDLASSKEVLAKIVDLLASRNKWDDLNEQLTLL 82 (445)
T ss_dssp HHHHHHHHHHHHHHHHHSSSCSTTTCHHHHHHHHHHHHHHSCHHHHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHHhhhccchhhHHHHHHHHHHHHHHhccHHHHHHHHHHH
Confidence 34455555444444444444444555555555666666666666555544443
No 239
>1nzn_A CGI-135 protein, fission protein FIS1P; TPR, unknown function; 2.00A {Homo sapiens} SCOP: a.118.8.1 PDB: 1iyg_A
Probab=95.07 E-value=0.2 Score=35.88 Aligned_cols=83 Identities=11% Similarity=0.092 Sum_probs=55.7
Q ss_pred CHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH---HHHHHHHhhcCCCCC--CHHhHHHHHHHHHhcCCHHHH
Q 010383 366 RVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE---AKRFWDDIVWPSNIH--DNYVYAAMIKGLCRSGKIHEA 440 (512)
Q Consensus 366 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~---a~~~~~~~~~~~~~~--~~~~~~~l~~~~~~~g~~~~a 440 (512)
....+..-|.+....| .++..+--.+..++.+..+... ++.+++.+.+.+ .| .....-.|.-++.+.|++++|
T Consensus 16 ~l~~~~~~y~~e~~~~-~~s~~~~F~yAw~Lv~S~~~~d~~~GI~lLe~l~~~~-~p~~~Rd~lY~LAvg~yklg~Y~~A 93 (126)
T 1nzn_A 16 DLLKFEKKFQSEKAAG-SVSKSTQFEYAWCLVRTRYNDDIRKGIVLLEELLPKG-SKEEQRDYVFYLAVGNYRLKEYEKA 93 (126)
T ss_dssp HHHHHHHHHHHHHHHS-CCCHHHHHHHHHHHTTSSSHHHHHHHHHHHHHHTTTS-CHHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHhccC-CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcC-CcchHHHHHHHHHHHHHHhhhHHHH
Confidence 4445555665555544 3666666667777777775554 778888877654 22 344555677788888888888
Q ss_pred HHHHHHHHHC
Q 010383 441 VHFLYELVDS 450 (512)
Q Consensus 441 ~~~~~~~~~~ 450 (512)
.+.++.+++.
T Consensus 94 ~~~~~~lL~~ 103 (126)
T 1nzn_A 94 LKYVRGLLQT 103 (126)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHHHh
Confidence 8888888875
No 240
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=94.75 E-value=0.67 Score=33.36 Aligned_cols=74 Identities=14% Similarity=0.100 Sum_probs=54.4
Q ss_pred CCCCHHhHHHHHHHHHhcCCH---HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChH
Q 010383 417 NIHDNYVYAAMIKGLCRSGKI---HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDAV 492 (512)
Q Consensus 417 ~~~~~~~~~~l~~~~~~~g~~---~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~~ 492 (512)
..|+..+--.+.+++++..+. .+++.++..+.+.+..-....+-.|.-++.+.|++++|.+..+.+.+ +.|+..
T Consensus 36 ~~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~--~eP~N~ 112 (134)
T 3o48_A 36 PTATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNNK 112 (134)
T ss_dssp GGSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHT--TCTTCH
T ss_pred CCCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHh--hCCCCH
Confidence 356666766677888877654 46788888887765222456677788889999999999999998887 567643
No 241
>4ady_A RPN2, 26S proteasome regulatory subunit RPN2; protein binding, PC repeat; 2.70A {Saccharomyces cerevisiae} PDB: 4b4t_N
Probab=94.31 E-value=4.8 Score=40.27 Aligned_cols=260 Identities=12% Similarity=0.033 Sum_probs=131.6
Q ss_pred HHhccCchhHHHHHHHHHHhCC--CCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCC-------CCcccHHHHHHH
Q 010383 183 GLCKHGGCMRAYQLLEEGIQFG--YLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDV-------DRTRICNIYLRA 253 (512)
Q Consensus 183 ~~~~~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~-------~~~~~~~~l~~~ 253 (512)
+....|+.++++.++......+ -.+....=..+.-+....|..+++..++......... +....-..+.-+
T Consensus 383 GlIh~g~~~~gl~~L~~yL~~~~s~~~~ik~GAllaLGli~ag~~~~~~~lL~~~L~~~~~~~~~~~~~~ir~gAaLGLG 462 (963)
T 4ady_A 383 GVIHKGNLLEGKKVMAPYLPGSRASSRFIKGGSLYGLGLIYAGFGRDTTDYLKNIIVENSGTSGDEDVDVLLHGASLGIG 462 (963)
T ss_dssp HHHTSSCTTTHHHHHTTTSTTSCCSCHHHHHHHHHHHHHHTTTTTHHHHHHHHHHHHHHSSCCSCHHHHHHHHHHHHHHH
T ss_pred hhhccCchHHHHHHHHHhccccCCCcHHHHHHHHHHHHHhcCCCcHHHHHHHHHHHcCccccccccccHHHHHHHHHHHH
Confidence 3556777788877776544311 0111222223333444555555677766665543220 001111222222
Q ss_pred HHccCC-hhhHHHHHHHHHhcCCCCChhhHH--HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCC
Q 010383 254 LCLIKN-PTELLNVLVFMLQTQCQPDVITLN--TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGR 330 (512)
Q Consensus 254 ~~~~~~-~~~a~~~~~~~~~~~~~~~~~~~~--~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 330 (512)
....|. -+++.+.+..+....- +...... ++...+.-.|+.+....++..+.+.. ..+..-...+.-++...|+
T Consensus 463 la~~GS~~eev~e~L~~~L~dd~-~~~~~~AalALGli~vGTgn~~ai~~LL~~~~e~~--~e~vrR~aalgLGll~~g~ 539 (963)
T 4ady_A 463 LAAMGSANIEVYEALKEVLYNDS-ATSGEAAALGMGLCMLGTGKPEAIHDMFTYSQETQ--HGNITRGLAVGLALINYGR 539 (963)
T ss_dssp HHSTTCCCHHHHHHHHHHHHTCC-HHHHHHHHHHHHHHHTTCCCHHHHHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTC
T ss_pred HHhcCCCCHHHHHHHHHHHhcCC-HHHHHHHHHHHhhhhcccCCHHHHHHHHHHHhccC--cHHHHHHHHHHHHhhhCCC
Confidence 222332 2345555555554321 1111112 23334556678777778877766532 2233333334444556777
Q ss_pred HHHHHHHHHhhcccCCCCCChhhH--HHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHH
Q 010383 331 IQEALNLLYQVMPQRGYSPGIVTY--NAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRF 408 (512)
Q Consensus 331 ~~~a~~~~~~~~~~~~~~~~~~~~--~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~ 408 (512)
.+.+..+++.+.... .|....- .++.-+|+..|+......++..+.... ..+......+.-++...|+.+.+.++
T Consensus 540 ~e~~~~li~~L~~~~--dp~vRygaa~alglAyaGTGn~~aIq~LL~~~~~d~-~d~VRraAViaLGlI~~g~~e~v~rl 616 (963)
T 4ady_A 540 QELADDLITKMLASD--ESLLRYGGAFTIALAYAGTGNNSAVKRLLHVAVSDS-NDDVRRAAVIALGFVLLRDYTTVPRI 616 (963)
T ss_dssp GGGGHHHHHHHHHCS--CHHHHHHHHHHHHHHTTTSCCHHHHHHHHHHHHHCS-CHHHHHHHHHHHHHHTSSSCSSHHHH
T ss_pred hHHHHHHHHHHHhCC--CHHHHHHHHHHHHHHhcCCCCHHHHHHHHHHhccCC-cHHHHHHHHHHHHhhccCCHHHHHHH
Confidence 777777665533221 2222221 233446677888888887888887642 22333333344455556777777777
Q ss_pred HHHhhcCCCCCCHHhHHHHHHHHHhcCCH-HHHHHHHHHHHH
Q 010383 409 WDDIVWPSNIHDNYVYAAMIKGLCRSGKI-HEAVHFLYELVD 449 (512)
Q Consensus 409 ~~~~~~~~~~~~~~~~~~l~~~~~~~g~~-~~a~~~~~~~~~ 449 (512)
++.+.+.+ .|...--..+.-+....|.. .++...+..+..
T Consensus 617 v~~L~~~~-d~~VR~gAalALGli~aGn~~~~aid~L~~L~~ 657 (963)
T 4ady_A 617 VQLLSKSH-NAHVRCGTAFALGIACAGKGLQSAIDVLDPLTK 657 (963)
T ss_dssp TTTGGGCS-CHHHHHHHHHHHHHHTSSSCCHHHHHHHHHHHT
T ss_pred HHHHHhcC-CHHHHHHHHHHHHHhccCCCcHHHHHHHHHHcc
Confidence 77666543 44444444444444444443 678888888864
No 242
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=94.31 E-value=0.36 Score=43.27 Aligned_cols=67 Identities=13% Similarity=0.133 Sum_probs=33.3
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH-----HCCCCCChHH
Q 010383 426 AMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR-----KNGLNPDAVT 493 (512)
Q Consensus 426 ~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~-----~~~~~p~~~~ 493 (512)
.++..+...|++++|...+..+.... +.+...|..++.++.+.|+..+|++.|+++. +.|+.|+..+
T Consensus 176 ~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~l 247 (388)
T 2ff4_A 176 AKAEAEIACGRASAVIAELEALTFEH-PYREPLWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPTL 247 (388)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHHH
T ss_pred HHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHHH
Confidence 34444445555555555555554432 2244455555555555555555555555543 2355555444
No 243
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=93.60 E-value=1.5 Score=32.01 Aligned_cols=72 Identities=14% Similarity=0.088 Sum_probs=53.2
Q ss_pred CCCHHhHHHHHHHHHhcCC---HHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010383 418 IHDNYVYAAMIKGLCRSGK---IHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491 (512)
Q Consensus 418 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 491 (512)
.|+..+--.+.+++++..+ ..+++.+++.+.+.+..-.....-.|.-++.+.|++++|.++.+.+++ +.|+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~--~eP~n 110 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFE--HERNN 110 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHH--TCCCC
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHh--cCCCc
Confidence 5666666667788887765 446788888887754333455666778888899999999999998888 67764
No 244
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=93.41 E-value=0.49 Score=31.89 Aligned_cols=45 Identities=16% Similarity=0.143 Sum_probs=22.0
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELV 448 (512)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 448 (512)
+..+-++.+...+..|++.+..+.+++|.+.+++..|.++|+-+.
T Consensus 28 e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK 72 (109)
T 1v54_E 28 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 72 (109)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 344444444444445555555555555555555555555554443
No 245
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=92.13 E-value=8.5 Score=36.78 Aligned_cols=71 Identities=8% Similarity=0.008 Sum_probs=34.2
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcccHHHHHHHHHc
Q 010383 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTRICNIYLRALCL 256 (512)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 256 (512)
.+..+.+.+++...+..+.. .+.+...-.....+....|+...|....+.+-..+ ...+..+..++..+.+
T Consensus 78 ~l~~l~~~~~w~~~l~~~~~-----~p~~~~~~c~~~~A~~~~G~~~~a~~~~~~lW~~~-~~~p~~c~~l~~~~~~ 148 (618)
T 1qsa_A 78 FVNELARREDWRGLLAFSPE-----KPGTTEAQCNYYYAKWNTGQSEEAWQGAKELWLTG-KSQPNACDKLFSVWRA 148 (618)
T ss_dssp HHHHHHHTTCHHHHHHHCCS-----CCSSHHHHHHHHHHHHHTTCHHHHHHHHHHHHSCS-SCCCTHHHHHHHHHHH
T ss_pred HHHHHHhCCCHHHHHHhccC-----CCCCHHHHHHHHHHHHHcCChhHHHHHHHHHHhCC-CCCcHHHHHHHHHHHH
Confidence 34445556666555553321 12344444445555666677666666555554332 2233344444444443
No 246
>2ff4_A Probable regulatory protein EMBR; winged-helix, tetratricopeptide repeat, beta-sandwich, trans; HET: DNA TPO; 1.90A {Mycobacterium tuberculosis} SCOP: a.4.6.1 a.118.8.3 b.26.1.2 PDB: 2fez_A*
Probab=91.99 E-value=1.1 Score=40.24 Aligned_cols=98 Identities=7% Similarity=0.058 Sum_probs=70.9
Q ss_pred cCcHHHHHHHHHHHHhC--CC-CCCh------------------HhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChh
Q 010383 7 LSRVGEAHKLFFDMKSR--GH-VPNV------------------VSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSL 65 (512)
Q Consensus 7 ~g~~~~A~~~~~~~~~~--~~-~~~~------------------~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~ 65 (512)
.|+.+.|.+.+++.... |. -++. .+...++..+...|++.+|+..+..+.... +.+..
T Consensus 128 ~~~~~~a~~~l~~Al~L~rG~~L~~~~~~~w~~~~r~~l~~~~~~a~~~~~~~~l~~g~~~~a~~~l~~~~~~~-P~~E~ 206 (388)
T 2ff4_A 128 AGRFEQASRHLSAALREWRGPVLDDLRDFQFVEPFATALVEDKVLAHTAKAEAEIACGRASAVIAELEALTFEH-PYREP 206 (388)
T ss_dssp TTCHHHHHHHHHHHHTTCCSSTTGGGTTSTTHHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHS-TTCHH
T ss_pred CCCHHHHHHHHHHHHHhcCCCCCCCCCchhHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHHHHHhC-CCCHH
Confidence 46777777778777654 32 1111 012345566778889999988888887653 44777
Q ss_pred hHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchH
Q 010383 66 TYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNA 105 (512)
Q Consensus 66 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~ 105 (512)
.|..+|.++.+.|+..+|.+.|.++.+.+.++-++.|+..
T Consensus 207 ~~~~lm~al~~~Gr~~~Al~~y~~~r~~L~~eLG~~P~~~ 246 (388)
T 2ff4_A 207 LWTQLITAYYLSDRQSDALGAYRRVKTTLADDLGIDPGPT 246 (388)
T ss_dssp HHHHHHHHHHTTTCHHHHHHHHHHHHHHHHHHHSCCCCHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHhCCCCCHH
Confidence 8888999999999999999998888888777778888754
No 247
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=91.17 E-value=1.1 Score=43.64 Aligned_cols=55 Identities=11% Similarity=0.001 Sum_probs=43.3
Q ss_pred HHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 428 IKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 428 ~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
.+-|...|+++-|+++-++.+..- +-+-.+|..|..+|...|+++.|+-.++.+.
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a-PseF~tW~~La~vYi~l~d~e~ALLtLNScP 398 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA-LDSFESWYNLARCHIKKEEYEKALFAINSMP 398 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC-SSCHHHHHHHHHHHHHTTCHHHHHHHHHHSC
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC-chhhHHHHHHHHHHHHhccHHHHHHHHhcCC
Confidence 344667788899998888888763 3357789999999999999999988888773
No 248
>1v54_E Cytochrome C oxidase polypeptide VA; oxidoreductase; HET: FME TPO HEA TGL PGV CHD CDL PEK PSC DMU; 1.80A {Bos taurus} SCOP: a.118.11.1 PDB: 1oco_E* 1occ_E* 1ocz_E* 1ocr_E* 1v55_E* 2dyr_E* 2dys_E* 2eij_E* 2eik_E* 2eil_E* 2eim_E* 2ein_E* 2occ_E* 2ybb_P* 2zxw_E* 3abk_E* 3abl_E* 3abm_E* 3ag1_E* 3ag2_E* ...
Probab=90.84 E-value=1.9 Score=29.09 Aligned_cols=63 Identities=13% Similarity=0.183 Sum_probs=45.9
Q ss_pred cHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHH
Q 010383 9 RVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVR 72 (512)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~ 72 (512)
+.-+.++-++.+...+..|++....+.+.+|-|-+++.-|.++|+-.+.+- .+...+|..+++
T Consensus 25 D~~e~rrglN~l~~~DlVP~P~ii~aaLrAcRRvND~alAVR~lE~iK~K~-~~~~~iY~~~lq 87 (109)
T 1v54_E 25 DAWELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKDKA-GPHKEIYPYVIQ 87 (109)
T ss_dssp CHHHHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-TTCTTHHHHHHH
T ss_pred cHHHHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHHh-cCchhhHHHHHH
Confidence 455677777777777888888888888888888888888888888776542 233445666554
No 249
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=90.64 E-value=1.4 Score=31.67 Aligned_cols=46 Identities=17% Similarity=0.174 Sum_probs=23.5
Q ss_pred HHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHH
Q 010383 404 EAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVD 449 (512)
Q Consensus 404 ~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 449 (512)
+..+-++.+...+.-|++.+..+.+++|.+.+|+..|.++|+-+..
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK~ 116 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVKD 116 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHHH
Confidence 3444444444444555555555555555555555555555554443
No 250
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=90.37 E-value=1.4 Score=40.03 Aligned_cols=63 Identities=13% Similarity=0.015 Sum_probs=42.1
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhCCCCC--ChhhHHHHHHHHHhcCChhhHHHHHHHHHHH
Q 010383 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLP--NSLTYSVLVRGVLRTRDVERANVLMFKLWER 93 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (512)
+...+...|.+.|+++.|.+.|.++...-..+ -...+..+++.+...+++..+...+.++-..
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~~~ 197 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVNSM 197 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 56677777888888888888888776642222 2345666677777777777777766665443
No 251
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=90.27 E-value=2.8 Score=31.61 Aligned_cols=64 Identities=5% Similarity=-0.042 Sum_probs=45.6
Q ss_pred hHHHHHHHHHhcCChhHHHHHHHHHHhC-CCCCCh-------hhHHHHHHHHHhcCChhhHHHHHHHHHHHh
Q 010383 31 SYTTLIHGYCRTGEMDVAYKVFDEMRHC-GVLPNS-------LTYSVLVRGVLRTRDVERANVLMFKLWERM 94 (512)
Q Consensus 31 ~~~~l~~~~~~~~~~~~a~~~~~~m~~~-~~~~~~-------~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~ 94 (512)
++-.=+..+...+.++.|+-+.+.+... +..|+. .++..+..++...+++.+|...|.++++.-
T Consensus 22 ~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq~~ 93 (167)
T 3ffl_A 22 NVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQQK 93 (167)
T ss_dssp CHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHH
Confidence 4455566788899999998888876442 123342 245667788889999999999988876643
No 252
>4gns_B Protein CSD3, chitin biosynthesis protein CHS6; FN3, BRCT, tetratricopeptide repeat, cargo adaptor, transpor; HET: EPE; 2.75A {Saccharomyces cerevisiae}
Probab=90.15 E-value=1.2 Score=43.36 Aligned_cols=54 Identities=17% Similarity=0.065 Sum_probs=38.9
Q ss_pred HHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhh
Q 010383 286 INGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQV 341 (512)
Q Consensus 286 ~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~ 341 (512)
...+...|+++.|+.+-++..... +.+..+|..|..+|...|+++.|+-.+..+
T Consensus 344 a~FLl~K~~~elAL~~Ak~AV~~a--PseF~tW~~La~vYi~l~d~e~ALLtLNSc 397 (754)
T 4gns_B 344 TNFLLNRGDYELALGVSNTSTELA--LDSFESWYNLARCHIKKEEYEKALFAINSM 397 (754)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHHC--SSCHHHHHHHHHHHHHTTCHHHHHHHHHHS
T ss_pred HHHHhccCcHHHHHHHHHHHHhcC--chhhHHHHHHHHHHHHhccHHHHHHHHhcC
Confidence 334556677888888877777654 556777888888888888888887777653
No 253
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.49 E-value=6.4 Score=41.16 Aligned_cols=51 Identities=12% Similarity=-0.057 Sum_probs=28.5
Q ss_pred HHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010383 180 IVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235 (512)
Q Consensus 180 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (512)
++..+...+..+.+.++.... +.++..--.+..++...|++++|.+.|++.
T Consensus 818 l~~~l~~~~~~~~~~~l~~~~-----~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka 868 (1139)
T 4fhn_B 818 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTT 868 (1139)
T ss_dssp HHHHHHHHSCTTHHHHHHHHS-----CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC
T ss_pred HHHHHHHhhhHHHHHHHhhhc-----cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH
Confidence 444444555555554443322 223333334566777788888888888665
No 254
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=89.42 E-value=11 Score=33.50 Aligned_cols=27 Identities=7% Similarity=-0.070 Sum_probs=20.5
Q ss_pred hhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010383 210 HTYKVLVEGLCGESDLEKARKVLQFML 236 (512)
Q Consensus 210 ~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (512)
.....+...|.+.|+.++..+++....
T Consensus 20 ~~~~~l~~~~~~~~~~~~~~~~~~~~~ 46 (394)
T 3txn_A 20 QGILQQGELYKQEGKAKELADLIKVTR 46 (394)
T ss_dssp HHHHHHHHHHHHHTCHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHcCCHHHHHHHHHHHH
Confidence 466677888888888888888877653
No 255
>4fhn_B Nucleoporin NUP120; protein complex,structural protein,nuclear pore complex,mRNA transport,protein transport, WD repeat; 6.99A {Schizosaccharomyces pombe 972h-}
Probab=89.03 E-value=16 Score=38.22 Aligned_cols=165 Identities=13% Similarity=0.094 Sum_probs=84.1
Q ss_pred HHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHc
Q 010383 284 TVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFR 363 (512)
Q Consensus 284 ~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 363 (512)
.++..+...+..+.+.++..-. +.+....-.+..++...|++++|.+.|.+. ..++..+.....
T Consensus 817 ~l~~~l~~~~~~~~~~~l~~~~------~~~~~~~yl~g~~~L~~ge~~~A~~~F~ka--a~~~~~~~~l~~-------- 880 (1139)
T 4fhn_B 817 ELVEKLFLFKQYNACMQLIGWL------NSDPIAVYLKALIYLKSKEAVKAVRCFKTT--SLVLYSHTSQFA-------- 880 (1139)
T ss_dssp HHHHHHHHHSCTTHHHHHHHHS------CCCHHHHHHHHHHHHHTTCHHHHHHHHHTC--CCSCTTCCCSCS--------
T ss_pred HHHHHHHHhhhHHHHHHHhhhc------cCCcHHHHHHHHHHHhcCCHHHHHHHHHHH--hhhhcccchhhh--------
Confidence 4455555666666655544322 233333345566677778888888777664 222222211100
Q ss_pred cCCHHHHHHHHHHHHhCC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCH----HhHHHHHHHHHhcCCH
Q 010383 364 LRRVEEAKEVFNCMLGIG--VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDN----YVYAAMIKGLCRSGKI 437 (512)
Q Consensus 364 ~~~~~~a~~~~~~~~~~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~----~~~~~l~~~~~~~g~~ 437 (512)
.... +..+.... ...-..-|..++..+.+.+.++.+.++-+.+++...+.+. ..|..+...+...|++
T Consensus 881 --~~~~----~~~~~~~~~~~~~l~~YY~hv~~LFe~~~~~~~vi~fa~lAi~~~~~~~~~~~~~l~~~iFk~~L~l~~y 954 (1139)
T 4fhn_B 881 --VLRE----FQEIAEKYHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAGKF 954 (1139)
T ss_dssp --SHHH----HHHHHHTTTSCCSSHHHHHHHHHHHHHTSCCHHHHHHHHHHHHHCCSCCHHHHHHHHHHHHHHHHHHCCS
T ss_pred --hhcc----cccccccccccccHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHhccCCChhhHHHHHHHHHHHHHhhCCH
Confidence 0000 00111100 0112234566667777777777777766665543211111 2466677777777777
Q ss_pred HHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCH
Q 010383 438 HEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMK 472 (512)
Q Consensus 438 ~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~ 472 (512)
++|...+-.+.+... -..++..|+..++..|..
T Consensus 955 e~Ay~aL~~~pd~~~--r~~cLr~LV~~lce~~~~ 987 (1139)
T 4fhn_B 955 DAAHVALMVLSTTPL--KKSCLLDFVNQLTKQGKI 987 (1139)
T ss_dssp GGGGHHHHHHHHSSS--CHHHHHHHHHHHHHHCCH
T ss_pred HHHHHHHHhCCCHHH--HHHHHHHHHHHHHhCCCh
Confidence 777777766655432 234555566555554443
No 256
>3o48_A Mitochondria fission 1 protein; tetratricopeptide repeat fold, TPR, scaffold, peroxisome, membrane fission, protein binding; 1.75A {Saccharomyces cerevisiae} PDB: 2pqr_A 2pqn_A 3uux_A
Probab=88.66 E-value=3.8 Score=29.54 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=33.7
Q ss_pred CCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 383 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.|+..+--.+..++.+..+ ..+++.+++++.+.+.......+-.|.-++.+.|++++|.+..+.+.+.
T Consensus 37 ~vs~qt~F~yAw~Lv~S~~~~d~~~GI~LLe~l~~~~~~~~Rd~LYyLAvg~yklgdY~~Ar~y~d~lL~~ 107 (134)
T 3o48_A 37 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 107 (134)
T ss_dssp GSCHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHCGGGHHHHHHHHHHHHHHHTCHHHHHHHHHHHHTT
T ss_pred CCChhhHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHHHhhhHHHHHHHHHHHHhh
Confidence 3444443344444444443 3345555555554331122334445555666666666666666666554
No 257
>1y8m_A FIS1; mitochondria, unknown function; NMR {Saccharomyces cerevisiae} SCOP: a.118.8.1
Probab=87.31 E-value=6.9 Score=28.61 Aligned_cols=68 Identities=15% Similarity=0.089 Sum_probs=37.8
Q ss_pred CCChHhHHHHHHHHHhcCC---HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 383 VADSTTYAIVIDGLCESNQ---LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 383 ~~~~~~~~~l~~~~~~~g~---~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.|+..+--.+..++.+..+ ..+++.+++.+.+.+........-.|.-++.+.|++++|.++.+.+.+.
T Consensus 36 ~vs~~t~F~YAw~Lv~S~~~~di~~GI~LLe~l~~~~~~~~RdcLYyLAvg~ykl~~Y~~Ar~y~d~lL~~ 106 (144)
T 1y8m_A 36 TATIQSRFNYAWGLIKSTDVNDERLGVKILTDIYKEAESRRRECLYYLTIGCYKLGEYSMAKRYVDTLFEH 106 (144)
T ss_dssp TSCHHHHHHHHHHHHHSSSHHHHHHHHHHHHHHHHHCCSTHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHT
T ss_pred CCcHHHHHHHHHHHHcCCCHHHHHHHHHHHHHHHhcCccchhHHHHHHHHHHHHhhhHHHHHHHHHHHHhc
Confidence 3455544445555555443 3455666666655332223344455566667777777777777777664
No 258
>2y69_E Cytochrome C oxidase subunit 5A; electron transport, complex IV, proton pumps, membrane prote; HET: TPO HEA CHD PEK PGV DMU; 1.95A {Bos taurus}
Probab=87.05 E-value=4.3 Score=29.20 Aligned_cols=45 Identities=13% Similarity=0.192 Sum_probs=21.1
Q ss_pred HHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHH
Q 010383 12 EAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMR 56 (512)
Q Consensus 12 ~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~ 56 (512)
+.++-++.+...+..|++......+.+|-+-+++.-|..+|+-.+
T Consensus 71 ElrrglN~l~~~DlVPeP~Ii~AALrAcRRvNDfalAVR~lE~vK 115 (152)
T 2y69_E 71 ELRKGMNTLVGYDLVPEPKIIDAALRACRRLNDFASAVRILEVVK 115 (152)
T ss_dssp HHHHHHHHHTTSSBCCCHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHhccccCCCcHHHHHHHHHHHHhhhHHHHHHHHHHHH
Confidence 334444444444444444444444444444444444444444443
No 259
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.97 E-value=14 Score=31.82 Aligned_cols=194 Identities=10% Similarity=0.077 Sum_probs=96.0
Q ss_pred cCcHHHHHHHHHHHHhCCCC---CC-hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhh
Q 010383 7 LSRVGEAHKLFFDMKSRGHV---PN-VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVER 82 (512)
Q Consensus 7 ~g~~~~A~~~~~~~~~~~~~---~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~ 82 (512)
.++.++.++-|+.-++.|.- -. -..|.++..-|.+.+++++|++++-.--. .+.+.|+...
T Consensus 9 ~~~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA~---------------~ll~~~Q~~s 73 (336)
T 3lpz_A 9 SNKIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVSQ---------------TLLRSGQGGS 73 (336)
T ss_dssp -CHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHH
T ss_pred hhHHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHH---------------HHHHCCCcch
Confidence 45666777777777766532 11 13577888888999999999887654321 1223344444
Q ss_pred HHHHHHHHHHHhhhcCCCCcchHhHHHHHHHHHccCC--------hhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCC
Q 010383 83 ANVLMFKLWERMKEEEDLSVNNAAFANLVDSLCREGY--------VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGR 154 (512)
Q Consensus 83 a~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~ 154 (512)
|-.+..-+++..... ++.++......|+..+..... +++|++.-.... ....-++.....+...|.+.++
T Consensus 74 g~DL~~llvevy~~~-~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g-~~~~Gdp~LH~~ig~~~~~e~~ 151 (336)
T 3lpz_A 74 GGDLAVLLVDTFRQA-GQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFG-DYPAGDPELHHVVGTLYVEEGE 151 (336)
T ss_dssp HHHHHHHHHHHHHHH-TCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHS-SCTTCCHHHHHHHHHHHHHTTC
T ss_pred HHHHHHHHHHHHHHc-CCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcC-CCCCCCHHHHHHHHHHHHccCC
Confidence 443333333333222 444554444444444443332 111222211111 1122344555666677777777
Q ss_pred hhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHH
Q 010383 155 NHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQF 234 (512)
Q Consensus 155 ~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~ 234 (512)
+.+|...|- .|-.+++..|..++..+...+... .++...-..++ .|.-.++...|..+++.
T Consensus 152 ~~~Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~--------------e~dlfiaRaVL-~yL~l~n~~~A~~~~~~ 212 (336)
T 3lpz_A 152 FEAAEKHLV----LGTKESPEVLARMEYEWYKQDESH--------------TAPLYCARAVL-PYLLVANVRAANTAYRI 212 (336)
T ss_dssp HHHHHHHHT----TSCTTHHHHHHHHHHHHHHTSCGG--------------GHHHHHHHHHH-HHHHTTCHHHHHHHHHH
T ss_pred HHHHHHHHH----hcCCchHHHHHHHHHHHHHhcCCc--------------cHHHHHHHHHH-HHHHhCCHHHHHHHHHH
Confidence 777776662 133333455655554443333211 11222222233 34455677777776665
Q ss_pred HH
Q 010383 235 ML 236 (512)
Q Consensus 235 ~~ 236 (512)
..
T Consensus 213 f~ 214 (336)
T 3lpz_A 213 FT 214 (336)
T ss_dssp HH
T ss_pred HH
Confidence 54
No 260
>3lpz_A GET4 (YOR164C homolog); protein targeting, tail-anchored protein biogenesis, GET PAT GET5 binding, protein transport; 1.98A {Chaetomium thermophilum}
Probab=86.39 E-value=15 Score=31.62 Aligned_cols=190 Identities=16% Similarity=0.127 Sum_probs=96.6
Q ss_pred ChhhHHHHHHHHHhcCCC----CChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHH
Q 010383 259 NPTELLNVLVFMLQTQCQ----PDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEA 334 (512)
Q Consensus 259 ~~~~a~~~~~~~~~~~~~----~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a 334 (512)
..++.+.-++.-++.|-- --..+|.++..-|.+.+++++|++++..-. ..+.+.|+...|
T Consensus 11 ~~~~~i~rl~~~I~~G~y~~~YEAHQ~~RTi~~Ry~~~k~y~eAidLL~~GA----------------~~ll~~~Q~~sg 74 (336)
T 3lpz_A 11 KIERIIARLQRRIAEGQPEEQYEAAQETRLVAARYSKQGNWAAAVDILASVS----------------QTLLRSGQGGSG 74 (336)
T ss_dssp HHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHH
T ss_pred HHHHHHHHHHHHHhCCCCccccHHHHHHHHHHHHHHhhcCHHHHHHHHHHHH----------------HHHHHCCCcchH
Confidence 344444444444444411 012345566666666677777766654432 234555665555
Q ss_pred HHHH---HhhcccCCCCCChhhHHHHHHHHHccCCHH-HHHHHHHHHHh----CC--CCCChHhHHHHHHHHHhcCCHHH
Q 010383 335 LNLL---YQVMPQRGYSPGIVTYNAVLRGLFRLRRVE-EAKEVFNCMLG----IG--VVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 335 ~~~~---~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
.++. -+.....++++|......++..+......+ .=..+.+++.+ .| ..-++.....+...|.+.+++.+
T Consensus 75 ~DL~~llvevy~~~~~~~~~~~~~rL~~L~~~~~~~~p~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~ig~~~~~e~~~~~ 154 (336)
T 3lpz_A 75 GDLAVLLVDTFRQAGQRVDGASRGKLLGCLRLFQPGEPVRKRFVKEMIDWSKKFGDYPAGDPELHHVVGTLYVEEGEFEA 154 (336)
T ss_dssp HHHHHHHHHHHHHHTCCCCHHHHHHHHHHHTTSCTTCHHHHHHHHHHHHHHHHHSSCTTCCHHHHHHHHHHHHHTTCHHH
T ss_pred HHHHHHHHHHHHHcCCCCCHHHHHHHHHHHHhCCCCCcHHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHHccCCHHH
Confidence 4433 233445666777777777777665544311 11223333322 12 23355666677777777777777
Q ss_pred HHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 405 AKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
|...|= .+..++...+..++.-+...+...++ +...- -.+--|.-.++...|..+++...
T Consensus 155 Ae~H~i----lg~~~s~~~~a~mL~ew~~~~~~~e~--------------dlfia-RaVL~yL~l~n~~~A~~~~~~f~ 214 (336)
T 3lpz_A 155 AEKHLV----LGTKESPEVLARMEYEWYKQDESHTA--------------PLYCA-RAVLPYLLVANVRAANTAYRIFT 214 (336)
T ss_dssp HHHHHT----TSCTTHHHHHHHHHHHHHHTSCGGGH--------------HHHHH-HHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHH----hcCCchHHHHHHHHHHHHHhcCCccH--------------HHHHH-HHHHHHHHhCCHHHHHHHHHHHH
Confidence 776662 22233334554444444333321111 11122 22334455788888888776655
No 261
>3ffl_A Anaphase-promoting complex subunit 7; tetratricopeptide repeat motif, helis-turn-helix, cell cycle division, mitosis, TPR repeat; 2.50A {Homo sapiens}
Probab=85.50 E-value=5.7 Score=29.96 Aligned_cols=70 Identities=14% Similarity=0.106 Sum_probs=39.0
Q ss_pred cCCCCCcc--hHHHHHHHHhccCchhHHHHHHHHHHhCC-CCCch-------hhHHHHHHHHhccCCHHHHHHHHHHHHh
Q 010383 168 RGLTPSLV--SYNSIVHGLCKHGGCMRAYQLLEEGIQFG-YLPSE-------HTYKVLVEGLCGESDLEKARKVLQFMLS 237 (512)
Q Consensus 168 ~g~~p~~~--~~~~l~~~~~~~~~~~~a~~~~~~~~~~~-~~~~~-------~~~~~l~~~~~~~g~~~~a~~~~~~~~~ 237 (512)
.|+.|... ++..-++.+...+.++.|+-+...+.... ..|+. .++..+.+++...|++..|...|++...
T Consensus 12 ~~~~~~~~~~~l~dqik~L~d~~LY~sA~~La~lLlSl~~~~~~~~sp~~~~~~l~~ladalf~~~eyrrA~~~y~qALq 91 (167)
T 3ffl_A 12 SGLVPRGSHMNVIDHVRDMAAAGLHSNVRLLSSLLLTLSNNNPELFSPPQKYQLLVYHADSLFHDKEYRNAVSKYTMALQ 91 (167)
T ss_dssp ---------CCHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSTTSSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred cCCCCCccHHHHHHHHHHHHHhhhHHHHHHHHHHHHHhhcCCcccccHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHH
Confidence 35555443 34445666777788888777777655421 12221 2455666777778888888888877543
No 262
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=84.20 E-value=5.6 Score=32.84 Aligned_cols=54 Identities=11% Similarity=0.147 Sum_probs=37.0
Q ss_pred ccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010383 4 LCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 58 (512)
+++.|++++|++....-++..+. |...-..+++.++-.|++++|.+-++-..+.
T Consensus 7 ll~~g~L~~al~~~~~~VR~~P~-da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l 60 (273)
T 1zbp_A 7 ALSEGQLQQALELLIEAIKASPK-DASLRSSFIELLCIDGDFERADEQLMQSIKL 60 (273)
T ss_dssp HTTTTCHHHHHHHHHHHHHTCTT-CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHhCCCHHHHHHHHHHHHHhCCc-CHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh
Confidence 46677777777777766666333 6666677777777777777777777766653
No 263
>1qsa_A Protein (soluble lytic transglycosylase SLT70); alpha-superhelix, transferase; HET: GOL; 1.65A {Escherichia coli} SCOP: a.118.5.1 d.2.1.6 PDB: 1qte_A* 1sly_A*
Probab=83.67 E-value=32 Score=32.94 Aligned_cols=286 Identities=14% Similarity=0.051 Sum_probs=138.0
Q ss_pred HHHHHHHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhH--HHHHHHHHHcCCCCCcchHHHHHHHH
Q 010383 107 FANLVDSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGA--SRVVYVMRKRGLTPSLVSYNSIVHGL 184 (512)
Q Consensus 107 ~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a--~~~~~~~~~~g~~p~~~~~~~l~~~~ 184 (512)
-.....+....|+..+|......+-..+. .....+..++..+.+.|..... .+-++.+...| +...-..++...
T Consensus 105 ~c~~~~A~~~~G~~~~a~~~~~~lW~~~~-~~p~~c~~l~~~~~~~g~lt~~~~~~R~~~al~~~---~~~~a~~l~~~l 180 (618)
T 1qsa_A 105 QCNYYYAKWNTGQSEEAWQGAKELWLTGK-SQPNACDKLFSVWRASGKQDPLAYLERIRLAMKAG---NTGLVTVLAGQM 180 (618)
T ss_dssp HHHHHHHHHHTTCHHHHHHHHHHHHSCSS-CCCTHHHHHHHHHHHTTCSCHHHHHHHHHHHHHTT---CHHHHHHHHHTC
T ss_pred HHHHHHHHHHcCChhHHHHHHHHHHhCCC-CCcHHHHHHHHHHHHCCCCCHHHHHHHHHHHHHCC---CHHHHHHHHHhC
Confidence 34456667777887777766666544443 3445677777777766655432 22223333322 111111111111
Q ss_pred -----------hc-cCchhHHHHHHHHHHhCCCCCchh---hHHHHHHHHhccCCHHHHHHHHHHHHhCCCCCCcc---c
Q 010383 185 -----------CK-HGGCMRAYQLLEEGIQFGYLPSEH---TYKVLVEGLCGESDLEKARKVLQFMLSKKDVDRTR---I 246 (512)
Q Consensus 185 -----------~~-~~~~~~a~~~~~~~~~~~~~~~~~---~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~---~ 246 (512)
.. ..+...+...... ..++.. .+...+.-..+ .+.+.|...+..........+.. .
T Consensus 181 ~~~~~~~a~~~~al~~~p~~~~~~~~~-----~~~~~~~~~~~~~~~~rlar-~d~~~A~~~~~~~~~~~~~~~~~~~~~ 254 (618)
T 1qsa_A 181 PADYQTIASAIISLANNPNTVLTFART-----TGATDFTRQMAAVAFASVAR-QDAENARLMIPSLAQAQQLNEDQIQEL 254 (618)
T ss_dssp CGGGHHHHHHHHHHHHCGGGHHHHHHH-----SCCCHHHHHHHHHHHHHHHH-HCHHHHHHHHHHHHHHTTCCHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhChHhHHHHHhc-----cCCChhhHHHHHHHHHHHHh-cCHHHHHHHHHhhhhccCCCHHHHHHH
Confidence 00 0011111111110 111111 11222222333 37788888888776433222211 2
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHh
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLL 326 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~ 326 (512)
...+.......+...++...+....... .+.....-.+....+.|+++.|...|+.|.... .......--+..++.
T Consensus 255 ~~~ia~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~e~~~r~Alr~~d~~~a~~~~~~l~~~~--~~~~r~~YW~~ra~~ 330 (618)
T 1qsa_A 255 RDIVAWRLMGNDVTDEQAKWRDDAIMRS--QSTSLIERRVRMALGTGDRRGLNTWLARLPMEA--KEKDEWRYWQADLLL 330 (618)
T ss_dssp HHHHHHTSCSTTCCHHHHHHHHHHHHTC--CCHHHHHHHHHHHHHHTCHHHHHHHHHHSCTTG--GGSHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCChHHHHHHHhccccC--CChHHHHHHHHHHHHCCCHHHHHHHHHHccccc--cccHhHHHHHHHHHH
Confidence 2222223333443445556666544432 233334444455556789999999998886532 223444556666777
Q ss_pred hcCCHHHHHHHHHhhcccC-----------CCC-------CCh---h-----hHHHHHHHHHccCCHHHHHHHHHHHHhC
Q 010383 327 NVGRIQEALNLLYQVMPQR-----------GYS-------PGI---V-----TYNAVLRGLFRLRRVEEAKEVFNCMLGI 380 (512)
Q Consensus 327 ~~~~~~~a~~~~~~~~~~~-----------~~~-------~~~---~-----~~~~l~~~~~~~~~~~~a~~~~~~~~~~ 380 (512)
..|+.++|..+|.+..... |.+ ++. . .-...+..+...|....|...+..+...
T Consensus 331 ~~g~~~~a~~~~~~~a~~~~fYg~lAa~~Lg~~~~~~~~~~~~~~~~~~~~~~~~~r~~~L~~~g~~~~a~~ew~~~~~~ 410 (618)
T 1qsa_A 331 ERGREAEAKEILHQLMQQRGFYPMVAAQRIGEEYELKIDKAPQNVDSALTQGPEMARVRELMYWNLDNTARSEWANLVKS 410 (618)
T ss_dssp HTTCHHHHHHHHHHHHTSCSHHHHHHHHHTTCCCCCCCCCCCSCCCCHHHHSHHHHHHHHHHHTTCHHHHHHHHHHHHTT
T ss_pred HcCCHHHHHHHHHHHhcCCChHHHHHHHHcCCCCCCCCCCCChhHHhhhccChHHHHHHHHHHCCChhhHHHHHHHHHhc
Confidence 8888888888877654211 100 000 0 0112233455677777777777776653
Q ss_pred CCCCChHhHHHHHHHHHhcCCHHHHHHHH
Q 010383 381 GVVADSTTYAIVIDGLCESNQLDEAKRFW 409 (512)
Q Consensus 381 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~ 409 (512)
.+......+.......|..+.+....
T Consensus 411 ---~~~~~~~~la~~a~~~~~~~~~v~~~ 436 (618)
T 1qsa_A 411 ---KSKTEQAQLARYAFNNQWWDLSVQAT 436 (618)
T ss_dssp ---CCHHHHHHHHHHHHHTTCHHHHHHHH
T ss_pred ---CCHHHHHHHHHHHHHCCChHHHHHHH
Confidence 12222333444444555555554443
No 264
>4b4t_R RPN7, 26S proteasome regulatory subunit RPN7; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=81.04 E-value=12 Score=34.01 Aligned_cols=61 Identities=8% Similarity=-0.086 Sum_probs=33.2
Q ss_pred hHHHHHHHHhccCchhHHHHHHHHHHhC--CCCCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010383 176 SYNSIVHGLCKHGGCMRAYQLLEEGIQF--GYLPSEHTYKVLVEGLCGESDLEKARKVLQFML 236 (512)
Q Consensus 176 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~--~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (512)
+...+...|.+.|+++.|.+.+.++... +...-...+..+++.+...+++..+...+.++.
T Consensus 133 ~~~~la~~~~~~Gd~~~A~~~~~~~~~~~~~~~~kid~~l~~irl~l~~~d~~~~~~~~~ka~ 195 (429)
T 4b4t_R 133 AWINLGEYYAQIGDKDNAEKTLGKSLSKAISTGAKIDVMLTIARLGFFYNDQLYVKEKLEAVN 195 (429)
T ss_dssp CCHHHHHHHHHHCCCTTHHHHHHHHHHHHTCCCSHHHHHHHHHHHHHHHTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHcCCHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHhccHHHHHHHHHHHH
Confidence 4445555555666666666666655543 112223445555566666666666666665553
No 265
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=79.68 E-value=18 Score=28.38 Aligned_cols=56 Identities=18% Similarity=0.096 Sum_probs=40.6
Q ss_pred cCCHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 010383 364 LRRVEEAKEVFNCMLGIGVVAD-STTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419 (512)
Q Consensus 364 ~~~~~~a~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 419 (512)
.+.......+|..|...|+--. ...|......+...|++.+|.++|+.-++.+-.|
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P 148 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRP 148 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4446788888888887765443 3356777777778888888888888887776666
No 266
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=76.86 E-value=34 Score=29.18 Aligned_cols=138 Identities=13% Similarity=0.171 Sum_probs=66.6
Q ss_pred cHHHHHHHHHHHHhCCCCCC-hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHH
Q 010383 9 RVGEAHKLFFDMKSRGHVPN-VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLM 87 (512)
Q Consensus 9 ~~~~A~~~~~~~~~~~~~~~-~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~ 87 (512)
.+++.+.-++.-++.|---. -..|.++..-|.+.+++++|++++..--. .+.+.|+...|-.+.
T Consensus 12 ~~~r~l~rl~~~I~~G~yYEAhQ~~Rtl~~Ry~~~~~~~eAidlL~~ga~---------------~ll~~~Q~~sa~DLa 76 (312)
T 2wpv_A 12 KLAKTLQRFENKIKAGDYYEAHQTLRTIANRYVRSKSYEHAIELISQGAL---------------SFLKAKQGGSGTDLI 76 (312)
T ss_dssp CHHHHHHHHHHHHHHTCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHH---------------HHHHTTCHHHHHHHH
T ss_pred HHHHHHHHHHHHhhccChHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHH---------------HHHHCCCcchHHHHH
Confidence 45555556665555542211 22577777778888888888887654322 122334444444433
Q ss_pred HHHHHHhhhcCCCCcchHhHHHHHHHHHccCC--------hhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHH
Q 010383 88 FKLWERMKEEEDLSVNNAAFANLVDSLCREGY--------VNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGAS 159 (512)
Q Consensus 88 ~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--------~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 159 (512)
.-+++..... +..++......++..+..... +++|++.-..... ...-++.....+...|.+.+++.+|.
T Consensus 77 ~llvev~~~~-~~~~~~~~~~rl~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~-~~~Gdp~LH~~~a~~~~~e~~~~~A~ 154 (312)
T 2wpv_A 77 FYLLEVYDLA-EVKVDDISVARLVRLIAELDPSEPNLKDVITGMNNWSIKFSE-YKFGDPYLHNTIGSKLLEGDFVYEAE 154 (312)
T ss_dssp HHHHHHHHHT-TCCCSHHHHHHHHHHHTTCCTTCTTHHHHHHHHHHHHHHTSS-CTTCCHHHHHHHHHHHHHTTCHHHHH
T ss_pred HHHHHHHHHc-CCCCCHHHHHHHHHHHHHCCCCCchHHHHHHHHHHHHhhcCC-CCCCCHHHHHHHHHHHhhcCCHHHHH
Confidence 3333333322 444454444444444433211 1112222222111 01234455566666677777776666
Q ss_pred HHHH
Q 010383 160 RVVY 163 (512)
Q Consensus 160 ~~~~ 163 (512)
..|-
T Consensus 155 ~H~i 158 (312)
T 2wpv_A 155 RYFM 158 (312)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 6553
No 267
>1zbp_A Hypothetical protein VPA1032; alpha-beta protein, structural genomics, PSI, protein struct initiative; 2.40A {Vibrio parahaemolyticus} SCOP: e.61.1.1
Probab=76.61 E-value=16 Score=30.27 Aligned_cols=118 Identities=10% Similarity=0.085 Sum_probs=76.4
Q ss_pred HHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHH
Q 010383 359 RGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIH 438 (512)
Q Consensus 359 ~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~ 438 (512)
....+.|+++.++.....-++.. |.|...-..++..++-.|++++|.+-++...+. .|+...-..+.+.+.
T Consensus 5 ~~ll~~g~L~~al~~~~~~VR~~-P~da~~R~~LfqLLcv~G~w~RA~~QL~~~a~l--~p~~~~~a~~yr~lI------ 75 (273)
T 1zbp_A 5 KNALSEGQLQQALELLIEAIKAS-PKDASLRSSFIELLCIDGDFERADEQLMQSIKL--FPEYLPGASQLRHLV------ 75 (273)
T ss_dssp HHHTTTTCHHHHHHHHHHHHHTC-TTCHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH--CGGGHHHHHHHHHHH------
T ss_pred HHHHhCCCHHHHHHHHHHHHHhC-CcCHHHHHHHHHHHHhcCCHHHHHHHHHHHHHh--CchhhHHHHHHHHHH------
Confidence 34568899999999998888865 677888888999999999999999999888654 343322221212221
Q ss_pred HHHHHHHHHHHCCCCC-----ChhhHHHHHHHHH--hcCCHHHHHHHHHHHHHC
Q 010383 439 EAVHFLYELVDSGVTP-----NIVCYNVVIDGAC--KLSMKREAYQILREMRKN 485 (512)
Q Consensus 439 ~a~~~~~~~~~~~~~p-----~~~~~~~l~~~~~--~~g~~~~a~~~~~~m~~~ 485 (512)
.|...-.++..-+-.| ...-...++.+.. ..|+.++|.++-..+.+.
T Consensus 76 ~aE~~R~~vfaG~~~P~~~g~~~~w~~~ll~Al~~~~~G~~~~A~~lr~~A~e~ 129 (273)
T 1zbp_A 76 KAAQARKDFAQGAATAKVLGENEELTKSLVSFNLSMVSQDYEQVSELALQIEEL 129 (273)
T ss_dssp HHHHHHHHHTTSCCCEECCCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCCCCCCCHHHHHHHHHHHHHhhcCCHHHHHHHHHHHHhc
Confidence 2222223333333222 2223344555544 479999999998888653
No 268
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=76.47 E-value=6 Score=34.57 Aligned_cols=79 Identities=14% Similarity=0.119 Sum_probs=40.8
Q ss_pred HHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC--HHHHHHHHHHHHhCCCCCCcccHHHHHHHH
Q 010383 177 YNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD--LEKARKVLQFMLSKKDVDRTRICNIYLRAL 254 (512)
Q Consensus 177 ~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~ 254 (512)
...++.-|...++.++|.+.++++....+ ........+..+.-+.++ .+...+++..+...+..+...+...+...+
T Consensus 220 i~~lL~EY~~s~D~~EA~~ci~EL~~p~f-hhe~V~~av~~aLE~~~~~~re~~~~LL~~L~~~glls~~q~~~Gf~~vl 298 (358)
T 3eiq_C 220 IDMLLKEYLLSGDISEAEHCLKELEVPHF-HHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITIDQMKRGYERIY 298 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHHHCCTTC-HHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCHHHHHHHHHHHH
T ss_pred HHHHHHHhccCCCHHHHHHHHHHccCCcc-hHHHHHHHHHHHHccCchHHHHHHHHHHHHHHHCCCCCHHHHHHHHHHHH
Confidence 35566666667777777777776642111 122333344444443332 345666666666665555544444444443
Q ss_pred Hc
Q 010383 255 CL 256 (512)
Q Consensus 255 ~~ 256 (512)
..
T Consensus 299 ~~ 300 (358)
T 3eiq_C 299 NE 300 (358)
T ss_dssp HH
T ss_pred Hh
Confidence 33
No 269
>3txn_A 26S proteasome regulatory complex subunit P42B; PCI domain, alpha solenoid, regulatory PART LID, hydrolase, protein binding; 2.50A {Drosophila melanogaster} PDB: 3txm_A
Probab=75.55 E-value=44 Score=29.74 Aligned_cols=222 Identities=12% Similarity=0.071 Sum_probs=103.2
Q ss_pred HHHHHHccCChhhHHHHHHHHHhcCCCCC-----hhhHHHHHHHHHhcCCHHHHHHHHHHHhhCC--C-CCCcHHHH--H
Q 010383 250 YLRALCLIKNPTELLNVLVFMLQTQCQPD-----VITLNTVINGFCKMGRIEEALKVLNDMVAGK--F-CAPDAVTF--T 319 (512)
Q Consensus 250 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~--~-~~~~~~~~--~ 319 (512)
++..|...|++.+|..++..+.+.-...| ...+...++.|...+++.++...+....... . ++|..... .
T Consensus 105 L~~l~~~~~~y~~a~~~i~~l~~~~~~~dd~~~llev~lle~~~~~~~~n~~k~k~~l~~a~~~~~ai~~~p~i~a~i~~ 184 (394)
T 3txn_A 105 LIALYFDTALYTEALALGAQLLRELKKLDDKNLLVEVQLLESKTYHALSNLPKARAALTSARTTANAIYCPPKVQGALDL 184 (394)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHHHTTSSCTHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHSCCCHHHHHHHHH
T ss_pred HHHHHHHhhhHHHHHHHHHHHHHHHhccccchhHHHHHHHHHHHHHHhccHHHHHHHHHHHHhhhccCCCCHHHHHHHHH
Confidence 44455555555555555544443211111 2234555667777888888887777665321 1 12222221 1
Q ss_pred HHHHHHh-hcCCHHHHHHHHHhhcccCCCCCC-----hhhHHHHHHHHHccCCHHHHHHHHH-HH-HhCCCCCChHhHHH
Q 010383 320 TIIFGLL-NVGRIQEALNLLYQVMPQRGYSPG-----IVTYNAVLRGLFRLRRVEEAKEVFN-CM-LGIGVVADSTTYAI 391 (512)
Q Consensus 320 ~l~~~~~-~~~~~~~a~~~~~~~~~~~~~~~~-----~~~~~~l~~~~~~~~~~~~a~~~~~-~~-~~~~~~~~~~~~~~ 391 (512)
.-...+. ..+++..|...|.+......-..+ ...|..+.. . -.++..+...++. .. ... ..|....+..
T Consensus 185 ~~Gi~~l~~~rdyk~A~~~F~eaf~~f~~~~~~~~~~~lkYlvL~a-L-l~~~r~el~~~l~~~~~~~~-~~pei~~l~~ 261 (394)
T 3txn_A 185 QSGILHAADERDFKTAFSYFYEAFEGFDSVDSVKALTSLKYMLLCK-I-MLGQSDDVNQLVSGKLAITY-SGRDIDAMKS 261 (394)
T ss_dssp HHHHHHHHTTSCHHHHHHHHHHHHHHHTTTCHHHHHHHHHHHHHHH-H-HTTCGGGHHHHHHSHHHHTT-CSHHHHHHHH
T ss_pred HhhHHHHHhccCHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHH-H-HcCCHHHHHHHhcccccccc-CCccHHHHHH
Confidence 2223345 678888888888776432211111 112222222 1 2233222222221 11 111 2345555666
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCC
Q 010383 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSM 471 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~ 471 (512)
++.+| ..+++.+...+++.... .+..|......+ ..+.+ .--...+.++.+ +-...++..+...+.- .
T Consensus 262 L~~a~-~~~dl~~f~~iL~~~~~-~l~~D~~l~~h~-~~L~~----~Ir~~~L~~i~~---pYsrIsl~~iA~~l~l--s 329 (394)
T 3txn_A 262 VAEAS-HKRSLADFQAALKEYKK-ELAEDVIVQAHL-GTLYD----TMLEQNLCRIIE---PYSRVQVAHVAESIQL--P 329 (394)
T ss_dssp HHHHH-HTTCHHHHHHHHHHSTT-TTTTSHHHHHHH-HHHHH----HHHHHHHHHHHT---TCSEEEHHHHHHHHTC--C
T ss_pred HHHHH-HhCCHHHHHHHHHHHHH-HHhcChHHHHHH-HHHHH----HHHHHHHHHHhH---hhceeeHHHHHHHHCc--C
Confidence 66654 45677777777666532 234454322111 11100 000111112221 2245566666666543 6
Q ss_pred HHHHHHHHHHHHHCC
Q 010383 472 KREAYQILREMRKNG 486 (512)
Q Consensus 472 ~~~a~~~~~~m~~~~ 486 (512)
.++++..+-+|...|
T Consensus 330 ~~evE~~L~~lI~dg 344 (394)
T 3txn_A 330 MPQVEKKLSQMILDK 344 (394)
T ss_dssp HHHHHHHHHHHHHTT
T ss_pred HHHHHHHHHHHHHCC
Confidence 778888888887654
No 270
>2wpv_A GET4, UPF0363 protein YOR164C; golgi-ER trafficking, tail-anchored protein, protein binding GET4; 1.99A {Saccharomyces cerevisiae} PDB: 3lku_A
Probab=74.45 E-value=40 Score=28.78 Aligned_cols=168 Identities=15% Similarity=0.117 Sum_probs=76.4
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHH---HHhhcccCCCCCChhhHHHH
Q 010383 281 TLNTVINGFCKMGRIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNL---LYQVMPQRGYSPGIVTYNAV 357 (512)
Q Consensus 281 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~---~~~~~~~~~~~~~~~~~~~l 357 (512)
.|.++..-|.+.+++++|++++..-. ..+.+.|+...|.++ +-+.....+.+++......+
T Consensus 35 ~~Rtl~~Ry~~~~~~~eAidlL~~ga----------------~~ll~~~Q~~sa~DLa~llvev~~~~~~~~~~~~~~rl 98 (312)
T 2wpv_A 35 TLRTIANRYVRSKSYEHAIELISQGA----------------LSFLKAKQGGSGTDLIFYLLEVYDLAEVKVDDISVARL 98 (312)
T ss_dssp HHHHHHHHHHHTTCHHHHHHHHHHHH----------------HHHHHTTCHHHHHHHHHHHHHHHHHTTCCCSHHHHHHH
T ss_pred HHHHHHHHHHHhcCHHHHHHHHHHHH----------------HHHHHCCCcchHHHHHHHHHHHHHHcCCCCCHHHHHHH
Confidence 44445555555555555555544322 123344554444442 12333445566666666666
Q ss_pred HHHHHccCCHH-HHHHHHHHHHh----CC--CCCChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHH
Q 010383 358 LRGLFRLRRVE-EAKEVFNCMLG----IG--VVADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKG 430 (512)
Q Consensus 358 ~~~~~~~~~~~-~a~~~~~~~~~----~~--~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~ 430 (512)
+..+......+ .=.++++++.+ .| ..-++.....+...|.+.|++.+|...|- .+...|...+..++.-
T Consensus 99 ~~l~~~~p~~~~~r~~fi~~ai~WS~~~g~~~~Gdp~LH~~~a~~~~~e~~~~~A~~H~i----~~~~~s~~~~a~~l~~ 174 (312)
T 2wpv_A 99 VRLIAELDPSEPNLKDVITGMNNWSIKFSEYKFGDPYLHNTIGSKLLEGDFVYEAERYFM----LGTHDSMIKYVDLLWD 174 (312)
T ss_dssp HHHHTTCCTTCTTHHHHHHHHHHHHHHTSSCTTCCHHHHHHHHHHHHHTTCHHHHHHHHH----TSCHHHHHHHHHHHHH
T ss_pred HHHHHHCCCCCchHHHHHHHHHHHHhhcCCCCCCCHHHHHHHHHHHhhcCCHHHHHHHHH----hCCCccHHHHHHHHHH
Confidence 65554422111 11222222221 11 11245556666666666666666665544 1111123344444333
Q ss_pred HHhc---CCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 431 LCRS---GKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 431 ~~~~---g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
+... |...++-- .. .-.+--|.-.|+...|..+++...
T Consensus 175 w~~~~~~~~~~e~dl--------------f~-~RaVL~yL~l~n~~~A~~~~~~f~ 215 (312)
T 2wpv_A 175 WLCQVDDIEDSTVAE--------------FF-SRLVFNYLFISNISFAHESKDIFL 215 (312)
T ss_dssp HHHHTTCCCHHHHHH--------------HH-HHHHHHHHHTTBHHHHHHHHHHHH
T ss_pred HHHhcCCCCcchHHH--------------HH-HHHHHHHHHhcCHHHHHHHHHHHH
Confidence 3332 32222111 11 112233445788999988888765
No 271
>3esl_A Checkpoint serine/threonine-protein kinase BUB1; mitotic spindle checkpoint, TPR motif, all-alpha domain, MAD3-like domain; HET: NHE; 1.74A {Saccharomyces cerevisiae}
Probab=70.72 E-value=36 Score=26.67 Aligned_cols=57 Identities=18% Similarity=0.088 Sum_probs=42.4
Q ss_pred cCCHHHHHHHHHHhhcCCCCC-CHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCC
Q 010383 399 SNQLDEAKRFWDDIVWPSNIH-DNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPN 455 (512)
Q Consensus 399 ~g~~~~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~ 455 (512)
.++...+..+|..|...++-. -...|......+...|++.+|.++|+.-++.+-.|-
T Consensus 92 ~~~~~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~GI~~~A~P~ 149 (202)
T 3esl_A 92 SNNFHESENTFKYMFNKGIGTKLSLFYEEFSKLLENAQFFLEAKVLLELGAENNCRPY 149 (202)
T ss_dssp TTCHHHHHHHHHHHHHHTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSH
T ss_pred ccccCCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccH
Confidence 444668888888887666543 344677777888888888888888888888776763
No 272
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=68.97 E-value=33 Score=25.49 Aligned_cols=50 Identities=14% Similarity=0.112 Sum_probs=25.6
Q ss_pred HHHHHHHHHhCCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 010383 370 AKEVFNCMLGIGVVADS-TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 419 (512)
...+|..|...|+--.. ..|......+...|++.+|.++|+.-++.+-.|
T Consensus 84 p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 134 (152)
T 4a1g_A 84 LHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEP 134 (152)
T ss_dssp HHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 55555555555443322 234444555555555555555555555544444
No 273
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle, transferase, spindle assembly checkpoint, mitosi repeat, KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Probab=66.35 E-value=38 Score=25.18 Aligned_cols=54 Identities=20% Similarity=0.193 Sum_probs=35.2
Q ss_pred hhHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCchhHHHHHHHHHHhCCCCCch
Q 010383 156 HGASRVVYVMRKRGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209 (512)
Q Consensus 156 ~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 209 (512)
+++..+|..|...|+-... .-|......+...|++.+|.++|+..++.+-.|-.
T Consensus 82 ~dp~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 136 (152)
T 4a1g_A 82 SDLHQFFEFLYNHGIGTLSSPLYIAWAGHLEAQGELQHASAVLQRGIQNQAEPRE 136 (152)
T ss_dssp SCHHHHHHHHHTTTTTTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHH
T ss_pred CCHHHHHHHHHHCCCcHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 4467777777776654333 34556666666777777777777777776666643
No 274
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=63.87 E-value=17 Score=27.25 Aligned_cols=52 Identities=13% Similarity=0.068 Sum_probs=23.2
Q ss_pred CChhHHHHHHHHHHhCCCCC--ChhhHHHHHH-HH-----HhcCChhhHHHHHHHHHHHh
Q 010383 43 GEMDVAYKVFDEMRHCGVLP--NSLTYSVLVR-GV-----LRTRDVERANVLMFKLWERM 94 (512)
Q Consensus 43 ~~~~~a~~~~~~m~~~~~~~--~~~~~~~l~~-~~-----~~~~~~~~a~~~~~~~~~~~ 94 (512)
|++-+|-++|+..-...-.+ ....|..||+ .. .+.|+...|..++.+....+
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al~~L 105 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSLQYF 105 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHH
Confidence 55555555555554432222 2233444444 11 22455555555555554444
No 275
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=62.40 E-value=48 Score=25.02 Aligned_cols=50 Identities=6% Similarity=0.118 Sum_probs=27.1
Q ss_pred HHHHHHHHHhCCCCCCh-HhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCC
Q 010383 370 AKEVFNCMLGIGVVADS-TTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIH 419 (512)
Q Consensus 370 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 419 (512)
...+|..|...|+--.. ..|......+...|++.+|.++|+.-++.+-.|
T Consensus 79 p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P 129 (164)
T 2wvi_A 79 PLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEP 129 (164)
T ss_dssp HHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBS
T ss_pred HHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCc
Confidence 44556666655543332 234555555555666666666666665555444
No 276
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=61.51 E-value=34 Score=27.79 Aligned_cols=24 Identities=8% Similarity=-0.036 Sum_probs=17.7
Q ss_pred HHHHHHHhcCChhHHHHHHHHHHh
Q 010383 34 TLIHGYCRTGEMDVAYKVFDEMRH 57 (512)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~~~m~~ 57 (512)
--++.+....++++|.+++++..+
T Consensus 23 deLDv~IA~r~feeAv~lle~~~~ 46 (235)
T 2d2s_A 23 EEIDIELARLRFESAVETLLDIES 46 (235)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHhHHHHHHHHHHHHH
Confidence 345667778888888888887654
No 277
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=61.25 E-value=57 Score=25.55 Aligned_cols=110 Identities=10% Similarity=-0.000 Sum_probs=47.6
Q ss_pred CChHhHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHH
Q 010383 384 ADSTTYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVI 463 (512)
Q Consensus 384 ~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~ 463 (512)
++..+-...+.++.+.++.+.. ..+..+.. .++..+-...+.++...|+. ++...+..+.+ .++...-...+
T Consensus 93 ~~~~vr~~a~~aL~~~~~~~~~-~~L~~~l~---d~~~~vr~~a~~aL~~~~~~-~~~~~L~~~l~---d~~~~vr~~a~ 164 (211)
T 3ltm_A 93 EDGWVRQSAAVALGQIGDERAV-EPLIKALK---DEDWFVRIAAAFALGEIGDE-RAVEPLIKALK---DEDGWVRQSAA 164 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGGGH-HHHHHHTT---CSSHHHHHHHHHHHHHHCCG-GGHHHHHHHTT---CSSHHHHHHHH
T ss_pred CCHHHHHHHHHHHHHhCcHHHH-HHHHHHHh---CCCHHHHHHHHHHHHHcCCH-HHHHHHHHHHc---CCCHHHHHHHH
Confidence 3444444444455555543322 22222321 33444444445555555543 23333434432 33444555555
Q ss_pred HHHHhcCCHHHHHHHHHHHHHCCCCCChHHHHHHHHhhccCC
Q 010383 464 DGACKLSMKREAYQILREMRKNGLNPDAVTWRILDKLHGNRG 505 (512)
Q Consensus 464 ~~~~~~g~~~~a~~~~~~m~~~~~~p~~~~~~~l~~~~~~~g 505 (512)
.++.+.+. .++...+..+.+. ++...-.....++.+.+
T Consensus 165 ~aL~~~~~-~~~~~~L~~~l~d---~~~~vr~~A~~aL~~~~ 202 (211)
T 3ltm_A 165 DALGEIGG-ERVRAAMEKLAET---GTGFARKVAVNYLETHK 202 (211)
T ss_dssp HHHHHHCS-HHHHHHHHHHHHH---CCHHHHHHHHHHHHC--
T ss_pred HHHHHhCc-hhHHHHHHHHHhC---CCHHHHHHHHHHHHhcC
Confidence 56655555 3344445554432 34444444444444433
No 278
>2wvi_A Mitotic checkpoint serine/threonine-protein kinase BUB1 beta; tumor suppressor, TPR, apoptosis, cell division, cell cycle, kinetochore, transferase; 1.80A {Homo sapiens} PDB: 3si5_A
Probab=59.84 E-value=54 Score=24.75 Aligned_cols=55 Identities=22% Similarity=0.219 Sum_probs=37.8
Q ss_pred hhHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchh
Q 010383 156 HGASRVVYVMRKRGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEH 210 (512)
Q Consensus 156 ~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 210 (512)
+....+|..|...|+-... ..|......+...|++.+|.++|+..++.+..|-..
T Consensus 77 ~~p~~if~~L~~~~IG~~~AlfY~~wA~~lE~~~~~~~A~~Iy~~Gi~~~A~P~~~ 132 (164)
T 2wvi_A 77 NEPLDMYSYLHNQGIGVSLAQFYISWAEEYEARENFRKADAIFQEGIQQKAEPLER 132 (164)
T ss_dssp SCHHHHHHHHHHTTSSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTTCBSHHH
T ss_pred CCHHHHHHHHHHCCcchhhHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCCcHHH
Confidence 4466777777777665443 355666666777788888888888887777666543
No 279
>2zu6_B Programmed cell death protein 4; protein-protein complex, ATP-binding, helicase, hydrolase, initiation factor, nucleotide-binding; 2.80A {Homo sapiens} PDB: 3eij_A
Probab=58.83 E-value=20 Score=30.52 Aligned_cols=19 Identities=11% Similarity=0.225 Sum_probs=13.4
Q ss_pred cccccCcHHHHHHHHHHHH
Q 010383 3 QLCGLSRVGEAHKLFFDMK 21 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~ 21 (512)
-|...|+.++|...++++.
T Consensus 12 EYf~~~d~~Ea~~~l~el~ 30 (307)
T 2zu6_B 12 EYFEHGDTNEVAEMLRDLN 30 (307)
T ss_dssp HHHHHCCHHHHHHHHHTTC
T ss_pred HHHcCCCHHHHHHHHHHhC
Confidence 3556778888888877754
No 280
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=56.90 E-value=65 Score=24.80 Aligned_cols=13 Identities=8% Similarity=0.023 Sum_probs=5.6
Q ss_pred HHHHHHHhCCCCC
Q 010383 195 QLLEEGIQFGYLP 207 (512)
Q Consensus 195 ~~~~~~~~~~~~~ 207 (512)
++.+.+.+.|..+
T Consensus 159 ~~v~~Ll~~ga~~ 171 (201)
T 3hra_A 159 DIVKLLMENGADQ 171 (201)
T ss_dssp HHHHHHHHTTCCT
T ss_pred HHHHHHHHCCCCC
Confidence 3444444444433
No 281
>2d2s_A Exocyst complex component EXO84; tethering complex, EXO84P, endocytosis/exocytosis complex; 2.85A {Saccharomyces cerevisiae} SCOP: a.118.17.2
Probab=55.61 E-value=63 Score=26.22 Aligned_cols=31 Identities=13% Similarity=-0.138 Sum_probs=19.7
Q ss_pred CCchhhHHHHHHHHhccCCHHHHHHHHHHHH
Q 010383 206 LPSEHTYKVLVEGLCGESDLEKARKVLQFML 236 (512)
Q Consensus 206 ~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~ 236 (512)
.++.......+..+.+.|+.+.|.++|-+..
T Consensus 88 ~~~~~~~r~~v~~L~rLg~~~~A~~lfL~~r 118 (235)
T 2d2s_A 88 SNEIVHLKSGTENMIKLGLPEQALDLFLQNR 118 (235)
T ss_dssp CSSHHHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred cCCHHHHHHHHHHHHHCCChhHHHHHHHHHH
Confidence 3445555556666777777777777775553
No 282
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A {Enterococcus faecalis}
Probab=55.34 E-value=69 Score=24.64 Aligned_cols=80 Identities=10% Similarity=-0.008 Sum_probs=36.5
Q ss_pred HHHHccCChhHHHHHHHhcCCCCCCCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcCCCCCcch---HHHHHHHHhccC
Q 010383 112 DSLCREGYVNEVFRIAEDMPQGKSVNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRGLTPSLVS---YNSIVHGLCKHG 188 (512)
Q Consensus 112 ~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~---~~~l~~~~~~~~ 188 (512)
...+..|+.+....++..-...-...+..-++ .+...+..|+. ++++.+.+.|..++... .+. +...+..|
T Consensus 10 ~~A~~~g~~~~v~~ll~~~~~~~~~~~~~g~t-~L~~A~~~~~~----~~v~~Ll~~g~~~~~~~~~g~t~-l~~A~~~~ 83 (201)
T 3hra_A 10 LEAANQRDTKKVKEILQDTTYQVDEVDTEGNT-PLNIAVHNNDI----EIAKALIDRGADINLQNSISDSP-YLYAGAQG 83 (201)
T ss_dssp HHHHHTTCHHHHHHHHTCTTCCTTCCCTTSCC-HHHHHHHHTCH----HHHHHHHHTTCCTTCCCTTSCCH-HHHHHHTT
T ss_pred HHHHHhccHHHHHHHHHcCCCCCCCCCCCCCC-HHHHHHHcCCH----HHHHHHHHcCCCCCCCCCCCCCH-HHHHHHcC
Confidence 34456677777777766543111112222222 33334455554 34455555565554332 222 23334456
Q ss_pred chhHHHHHH
Q 010383 189 GCMRAYQLL 197 (512)
Q Consensus 189 ~~~~a~~~~ 197 (512)
+.+-+..++
T Consensus 84 ~~~~~~~Ll 92 (201)
T 3hra_A 84 RTEILAYML 92 (201)
T ss_dssp CHHHHHHHH
T ss_pred CHHHHHHHH
Confidence 555444444
No 283
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats, methyllyine binding, huntingti interacting protein 14, acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo sapiens}
Probab=55.22 E-value=44 Score=26.66 Aligned_cols=48 Identities=10% Similarity=0.018 Sum_probs=21.3
Q ss_pred HHHhcCCHHHHHHHHHHHHHCCCCCChhhH--HHHHHHHHhcCCHHHHHHHHHH
Q 010383 430 GLCRSGKIHEAVHFLYELVDSGVTPNIVCY--NVVIDGACKLSMKREAYQILRE 481 (512)
Q Consensus 430 ~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~--~~l~~~~~~~g~~~~a~~~~~~ 481 (512)
..+..|+.+-+.. +.+.|..++.... .+.+....+.|+.+-+.-+++.
T Consensus 183 ~A~~~~~~~~v~~----Ll~~g~~~~~~~~~g~t~l~~A~~~~~~~~v~~L~~~ 232 (240)
T 3eu9_A 183 WAVLAGNTTVISL----LLEAGANVDAQNIKGESALDLAKQRKNVWMINHLQEA 232 (240)
T ss_dssp HHHHHTCHHHHHH----HHHHTCCTTCBCTTSCBHHHHHHHTTCHHHHHHHHHH
T ss_pred HHHHcCCHHHHHH----HHHcCCCCCCcCCCCCCHHHHHHHcCcHHHHHHHHHh
Confidence 3445566553333 3344544443211 1233444556666555444443
No 284
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=52.37 E-value=42 Score=26.81 Aligned_cols=54 Identities=9% Similarity=0.124 Sum_probs=39.9
Q ss_pred hhHHHHHHHHHHcCCCCCc-chHHHHHHHHhccCchhHHHHHHHHHHhCCCCCch
Q 010383 156 HGASRVVYVMRKRGLTPSL-VSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSE 209 (512)
Q Consensus 156 ~~a~~~~~~~~~~g~~p~~-~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~ 209 (512)
++...+|..|...|+--.. ..|......+...|++.+|.++|+..++.+-.|-.
T Consensus 131 ~~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P~~ 185 (223)
T 4aez_C 131 DEPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKPFL 185 (223)
T ss_dssp SCHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBSHH
T ss_pred CCHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCccHH
Confidence 5777888888887765443 35667777777888888888888888877766643
No 285
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=52.16 E-value=66 Score=23.76 Aligned_cols=63 Identities=8% Similarity=0.057 Sum_probs=41.2
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 18 FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+.+.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 16 ~~l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 78 (150)
T 2xig_A 16 MSIKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKENFIS 78 (150)
T ss_dssp HHHHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCcEE
Confidence 445667777544 455677777777778888899988887765556666666666666666544
No 286
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=52.10 E-value=59 Score=23.84 Aligned_cols=63 Identities=10% Similarity=-0.066 Sum_probs=43.8
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 18 FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+.+.+.|.+++.. -..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 11 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 73 (145)
T 2fe3_A 11 ETLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESGLVK 73 (145)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCCCEE
Confidence 3456678776553 45667777777777889999999988765556667666667776666544
No 287
>2b7e_A PRE-mRNA processing protein PRP40; structural protein; NMR {Saccharomyces cerevisiae} SCOP: a.159.2.1
Probab=50.65 E-value=14 Score=22.09 Aligned_cols=28 Identities=18% Similarity=0.205 Sum_probs=11.8
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHH
Q 010383 47 VAYKVFDEMRHCGVLPNSLTYSVLVRGV 74 (512)
Q Consensus 47 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~ 74 (512)
+|.+.|.+|++..-.+...||...++.+
T Consensus 4 Eae~aF~~lL~~~~V~s~wsweqamr~i 31 (59)
T 2b7e_A 4 EAEKEFITMLKENQVDSTWSFSRIISEL 31 (59)
T ss_dssp HHHHHHHHHHHHTTCCSSCCHHHHHHHH
T ss_pred HHHHHHHHHHHHcCCCCCCcHHHHHHHh
Confidence 4444444444432223333444444444
No 288
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=50.01 E-value=68 Score=22.97 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=40.8
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCC
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK--IHEAVHFLYELVDSGVT 453 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 453 (512)
....++.=|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+.+.|+-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 35677888888999999999999985221 1122334444445554432 35567777777766544
No 289
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=50.00 E-value=57 Score=22.08 Aligned_cols=50 Identities=18% Similarity=-0.006 Sum_probs=21.1
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 395 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+.+.|++++|..+.+.. ..||...|-+|. -.+.|-.+++..-+.++...
T Consensus 48 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALc--e~rlGl~s~le~rL~~la~s 97 (115)
T 2uwj_G 48 SLANQGRYQEALAFAHGN----PWPALEPWFALC--EWHLGLGAALDRRLAGLGGS 97 (115)
T ss_dssp HHHHTTCHHHHHGGGTTC----CCGGGHHHHHHH--HHHTTCHHHHHHHHHHHHTC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHH--HHhcccHHHHHHHHHHHHhC
Confidence 344455555555444432 144444444332 22344444444444444433
No 290
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=49.89 E-value=1.3e+02 Score=30.85 Aligned_cols=107 Identities=11% Similarity=-0.061 Sum_probs=62.2
Q ss_pred HHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCC------------------
Q 010383 392 VIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVT------------------ 453 (512)
Q Consensus 392 l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~------------------ 453 (512)
++..+...|..+-|.++..-+ +.+...--.++.+|...|++++|.+.|++.- .|+.
T Consensus 816 l~~~L~~~~~~~~a~eL~~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA-~gl~~~~~~~~~~~~~~~ll~~ 889 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLIGWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTS-LVLYSHTSQFAVLREFQEIAEK 889 (950)
T ss_dssp HHHHHHHTTCHHHHHHHGGGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCC-CTTCSSCCSCGGGHHHHHHHHH
T ss_pred HHHHHHHhcHHHHHHHHHhhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHh-hhcccCcccccchhhhhhccCc
Confidence 445555556555444433221 2233332345566666677777766665532 1111
Q ss_pred -----CChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh-----HHHHHHHHhhccCC
Q 010383 454 -----PNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA-----VTWRILDKLHGNRG 505 (512)
Q Consensus 454 -----p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~-----~~~~~l~~~~~~~g 505 (512)
.....|..++..+-+.+-++-+.++.+...+. ..+|. ..|..+.++.+..|
T Consensus 890 ~e~~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~-~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 890 YHHQNLLSCYYLHLSKKLFEESAYIDALEFSLLADAS-KETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp TTTCSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHT-CCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred ccccchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhh-cccCCccchHHHHHHHHHHHhhCC
Confidence 11235788999999999999999999998864 23332 24666667666544
No 291
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=49.56 E-value=61 Score=23.41 Aligned_cols=62 Identities=10% Similarity=0.021 Sum_probs=42.4
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 19 DMKSRGHVPNVVSYTTLIHGYCRTG-EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 8 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 70 (136)
T 1mzb_A 8 ELRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEAAGLVV 70 (136)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 456677776554 456677777666 67889999999988765666767666666666665544
No 292
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=49.29 E-value=76 Score=25.10 Aligned_cols=66 Identities=14% Similarity=0.117 Sum_probs=40.0
Q ss_pred HHHHHHHHHHHHhCCCCCChH--h-----HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 010383 10 VGEAHKLFFDMKSRGHVPNVV--S-----YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT 77 (512)
Q Consensus 10 ~~~A~~~~~~~~~~~~~~~~~--~-----~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 77 (512)
++.|+.+|+.+.+.-..|+.. . -...+..|.+.|.+++|.++|++.-.. .++..-+..-+....+.
T Consensus 88 LESAl~v~~~I~~e~~l~~~l~e~i~~llk~qAV~VCiek~~f~kA~eiLkr~~~~--~~s~~kLr~kL~~II~~ 160 (235)
T 3bu8_A 88 LESAINVLEMIKTEFTLTEAVVESSRKLVKEAAVIICIKNKEFEKASKILKKHMSK--DPTTQKLRNDLLNIIRE 160 (235)
T ss_dssp HHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHSTT--CGGGHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhhcCcHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHhcC--CCCchHHHHHHHHHHhc
Confidence 578888898888763222211 1 123445688999999999999998764 23343343333333333
No 293
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=49.14 E-value=67 Score=24.41 Aligned_cols=27 Identities=7% Similarity=-0.121 Sum_probs=20.6
Q ss_pred hhHHHHHHHHHhcCCHHHHHHHHHHHH
Q 010383 457 VCYNVVIDGACKLSMKREAYQILREMR 483 (512)
Q Consensus 457 ~~~~~l~~~~~~~g~~~~a~~~~~~m~ 483 (512)
..++.+...|...|+.++|+..+..--
T Consensus 115 fFy~l~a~lltq~g~r~EaI~y~~~Sf 141 (242)
T 3kae_A 115 FFESLLGDLCTLSGYREEGIGHYVRSF 141 (242)
T ss_dssp HHHHHHHHHHHHTTCHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhcCHHHhhhHhhhhc
Confidence 346677788888999999998876543
No 294
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=48.53 E-value=61 Score=21.99 Aligned_cols=50 Identities=18% Similarity=0.094 Sum_probs=21.9
Q ss_pred HHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHC
Q 010383 395 GLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 395 ~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
.+.+.|++++|..+.+.. ..||...|-+|.. .+.|-.+++..-+.++...
T Consensus 49 SLmNrG~Yq~Al~l~~~~----c~pdlepw~ALce--~rlGl~s~le~rL~~la~s 98 (116)
T 2p58_C 49 SLMNRGDYASALQQGNKL----AYPDLEPWLALCE--YRLGLGSALESRLNRLARS 98 (116)
T ss_dssp HHHHTTCHHHHHHHHTTS----CCGGGHHHHHHHH--HHHTCHHHHHHHHHHHTTC
T ss_pred HHHcchhHHHHHHhcCCC----CCchHHHHHHHHH--HhcccHHHHHHHHHHHHhC
Confidence 344455555555554433 1444444444322 2344444444444444433
No 295
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=48.49 E-value=59 Score=21.80 Aligned_cols=61 Identities=10% Similarity=0.090 Sum_probs=38.5
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcchHhHHH
Q 010383 47 VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNNAAFAN 109 (512)
Q Consensus 47 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~~~~~ 109 (512)
.|.++.++....|+.|+..+...++..|...+- + +..+..+++.--....+..|+...++.
T Consensus 27 sae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~ 87 (101)
T 2keb_A 27 SAQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNS 87 (101)
T ss_dssp CHHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHH
T ss_pred cHHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHH
Confidence 467777777777888888888888888777664 2 555555544432334456666554433
No 296
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=47.92 E-value=59 Score=24.17 Aligned_cols=67 Identities=19% Similarity=0.313 Sum_probs=43.0
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC--HHHHHHHHHHHHHCCCCCC
Q 010383 388 TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK--IHEAVHFLYELVDSGVTPN 455 (512)
Q Consensus 388 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~p~ 455 (512)
....++.=|...|+.++|.+.++++.... .....+...+..++-+.++ .+.+..++..+.+.++-+.
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~is~ 79 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTITI 79 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCSCH
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCcCH
Confidence 35678888999999999999999985321 1123344445555554333 4557777777777665433
No 297
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=47.56 E-value=59 Score=23.88 Aligned_cols=62 Identities=13% Similarity=0.003 Sum_probs=43.7
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 18 FDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+.+.+.|.+++.. -..++..+...+ .-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 8 ~~L~~~g~r~T~q-R~~Il~~l~~~~-h~ta~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 69 (145)
T 3eyy_A 8 SDLRQRGYRLTPQ-RQLVLEAVDTLE-HATPDDILGEVRKTASGINISTVYRTLELLEELGLVS 69 (145)
T ss_dssp HHHHTTTCCCCHH-HHHHHHHHHHHS-SBCHHHHHHHHHTTCTTCCHHHHHHHHHHHHHHTSEE
T ss_pred HHHHHcCCCcCHH-HHHHHHHHHhcC-CCCHHHHHHHHHhhCCCCCHhHHHHHHHHHHHCCcEE
Confidence 4456678886654 455667777776 7889999999988776667777666667666666544
No 298
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein; 2.70A {Homo sapiens} SCOP: d.211.1.1
Probab=45.98 E-value=1.6e+02 Score=26.26 Aligned_cols=14 Identities=0% Similarity=-0.249 Sum_probs=6.8
Q ss_pred HHHHHHhcCChhhH
Q 010383 70 LVRGVLRTRDVERA 83 (512)
Q Consensus 70 l~~~~~~~~~~~~a 83 (512)
.+...+..|+.+-+
T Consensus 17 ~L~~Aa~~g~~~~v 30 (437)
T 1n11_A 17 PLHVASFMGHLPIV 30 (437)
T ss_dssp HHHHHHHHTCHHHH
T ss_pred HHHHHHHCCCHHHH
Confidence 44445555554433
No 299
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=45.67 E-value=54 Score=24.66 Aligned_cols=71 Identities=8% Similarity=0.021 Sum_probs=44.1
Q ss_pred HHHHHHHHHH-HHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC--CCCCChhhHHHHHHHHHhcCChh
Q 010383 10 VGEAHKLFFD-MKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC--GVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 10 ~~~A~~~~~~-~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~--~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
.+.+.+.+.+ +.+.|.+++. .-..++..+...+..-.|.++++.+.+. +...+..|-..-+..+...|-..
T Consensus 13 ~~~~~~~~~~~L~~~g~r~T~-qR~~IL~~L~~~~~h~sA~eI~~~l~~~~~~~~is~aTVYRtL~~L~e~Glv~ 86 (162)
T 4ets_A 13 YDVLLERFKKILRQGGLKYTK-QREVLLKTLYHSDTHYTPESLYMEIKQAEPDLNVGIATVYRTLNLLEEAEMVT 86 (162)
T ss_dssp HHHHHHHHHHHHHHHTCCCCH-HHHHHHHHHHSCCSCBCHHHHHHHHHHHCGGGCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHHHHHHHHHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHhhcCCCCCCHHHHHHHHHHHHHCCCEE
Confidence 3455555544 4445777544 3466677777777777888888888776 54456666555566666655544
No 300
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=44.61 E-value=67 Score=23.75 Aligned_cols=63 Identities=10% Similarity=-0.003 Sum_probs=42.9
Q ss_pred HHHHhCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 18 FDMKSRGHVPNVVSYTTLIHGYCRTG-EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 18 ~~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
+.+.+.|.+++.. -..++..+...+ ..-.|.++++.+.+.+...+..|....+..+...|-+.
T Consensus 6 ~~l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 69 (150)
T 2w57_A 6 QALKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGIVT 69 (150)
T ss_dssp HHHHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSEE
T ss_pred HHHHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCcEE
Confidence 3466777776554 455666666666 67788999999988765566767666666666666544
No 301
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=44.25 E-value=94 Score=28.78 Aligned_cols=65 Identities=15% Similarity=0.190 Sum_probs=42.2
Q ss_pred hHhHHHHHHHHHhcCChhHHHHHHHHHHhCCC-CCCh--hhHH-HHHHHHHhcCChhhHHHHHHHHHHH
Q 010383 29 VVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGV-LPNS--LTYS-VLVRGVLRTRDVERANVLMFKLWER 93 (512)
Q Consensus 29 ~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~-~~~~--~~~~-~l~~~~~~~~~~~~a~~~~~~~~~~ 93 (512)
...+|.+++.|...+.++.|..+..+..--.. .+|. ..|. .+.+.+.-.+++.+|.+.+...++.
T Consensus 231 a~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 231 AMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp HHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred HHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 34588899999999999999999998752100 0111 1222 2345666678888887776666544
No 302
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A; 1.80A {Homo sapiens} SCOP: d.211.1.1
Probab=43.71 E-value=1.3e+02 Score=24.54 Aligned_cols=19 Identities=11% Similarity=0.294 Sum_probs=9.8
Q ss_pred HHHHHHHhcCChhHHHHHH
Q 010383 34 TLIHGYCRTGEMDVAYKVF 52 (512)
Q Consensus 34 ~l~~~~~~~~~~~~a~~~~ 52 (512)
+.+...++.|+.+....++
T Consensus 7 ~~L~~A~~~g~~~~v~~Ll 25 (285)
T 1wdy_A 7 HLLIKAVQNEDVDLVQQLL 25 (285)
T ss_dssp HHHHHHHHTTCHHHHHHHH
T ss_pred hHHHHHHHcCCHHHHHHHH
Confidence 3445555666655444443
No 303
>4g8k_A 2-5A-dependent ribonuclease; ankyrin-repeat domain, single-stranded RNA, hydrolase; 2.40A {Homo sapiens} PDB: 4g8l_A*
Probab=42.73 E-value=1.6e+02 Score=25.14 Aligned_cols=108 Identities=11% Similarity=0.038 Sum_probs=53.9
Q ss_pred HHHHHHHHhCCCCCChHh--HHHHHHHHHhcCCHHHHHHHHHHhh-cCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010383 371 KEVFNCMLGIGVVADSTT--YAIVIDGLCESNQLDEAKRFWDDIV-WPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYEL 447 (512)
Q Consensus 371 ~~~~~~~~~~~~~~~~~~--~~~l~~~~~~~g~~~~a~~~~~~~~-~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 447 (512)
..+.+.+.+.|..++... -...+...+..|..+.+..+++.-- ..+ ..|..-.+.|..+ ++.|+.+ +.+.+
T Consensus 219 ~~i~~lLl~~gad~n~~d~~g~t~L~~a~~~~~~~~v~~Ll~~~~~~vn-~~d~~G~TpL~~A-~~~g~~~----iv~~L 292 (337)
T 4g8k_A 219 EAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLVQRLLEQEHIEIN-DTDSDGKTALLLA-VELKLKK----IAELL 292 (337)
T ss_dssp HHHHHHHHHTTCCTTCCCGGGCCHHHHHHHTTCHHHHHHHHTSTTCCTT-CBCTTSCBHHHHH-HHTTCHH----HHHHH
T ss_pred HHHHHHHHHCCCCCCCcCCCCCCHHHHHHHhhhhHHHHHHHHhcCCccc-CcCCCCCCHHHHH-HHcCCHH----HHHHH
Confidence 334444566665554321 1123334456777776666554311 111 1122222334333 4556654 44455
Q ss_pred HHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh
Q 010383 448 VDSGVTPNIVCYNVVIDGACKLSMKREAYQILREMRKNGLNPDA 491 (512)
Q Consensus 448 ~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m~~~~~~p~~ 491 (512)
++.|..++..+ . +...++.|+.+ +++.+++.|-.||.
T Consensus 293 l~~GAd~n~~~--~-L~~A~~~~~~~----iv~~Ll~~GA~~d~ 329 (337)
T 4g8k_A 293 CKRGASTDCGD--L-VMTARRNYDHS----LVKVLLSHGAKEDF 329 (337)
T ss_dssp HTTSCSSTTCC--H-HHHHHHTTCHH----HHHHHHHTTCCC--
T ss_pred HHCCCCCCCCC--H-HHHHHHcCCHH----HHHHHHHCcCCCCC
Confidence 67787777654 2 33344566654 56667788877764
No 304
>4b4t_S RPN3, 26S proteasome regulatory subunit RPN3; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=40.18 E-value=2.3e+02 Score=26.29 Aligned_cols=70 Identities=7% Similarity=0.013 Sum_probs=48.8
Q ss_pred CCCcchHhHHHHHHHHHccCChhHHHHHHHhcCCCCC-CCcc--hhH-HHHHHHHHhcCChhhHHHHHHHHHHc
Q 010383 99 DLSVNNAAFANLVDSLCREGYVNEVFRIAEDMPQGKS-VNEE--FAC-GHMIDSLCRSGRNHGASRVVYVMRKR 168 (512)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~-~~~~--~~~-~~l~~~~~~~~~~~~a~~~~~~~~~~ 168 (512)
+.......++.+++.|...+.++.|..+..+..-... .++. ..| -.+.+.+.-.+++.+|.+.+......
T Consensus 226 D~~~qa~l~nllLRnYL~~~~y~qA~~lvsk~~fP~~~~sn~q~~rY~YY~GRI~a~q~~Y~eA~~~L~~A~rk 299 (523)
T 4b4t_S 226 DNETKAMLINLILRDFLNNGEVDSASDFISKLEYPHTDVSSSLEARYFFYLSKINAIQLDYSTANEYIIAAIRK 299 (523)
T ss_dssp SSCHHHHHHHHHHHHHHHSSCSTTHHHHHHHHCSCTTTSCHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHTSS
T ss_pred CcchhHHHHHHHHHHHHccCcHHHHHHHHhcCcCCcccCCHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHh
Confidence 3444456788899999999999999999998752111 1111 111 22456677889999999998887765
No 305
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=38.21 E-value=54 Score=28.50 Aligned_cols=18 Identities=17% Similarity=0.165 Sum_probs=11.0
Q ss_pred ccccCcHHHHHHHHHHHH
Q 010383 4 LCGLSRVGEAHKLFFDMK 21 (512)
Q Consensus 4 ~~~~g~~~~A~~~~~~~~ 21 (512)
|...|+.++|...++++.
T Consensus 21 y~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 21 YLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHCCHHHHHHHHHTTC
T ss_pred HHhCCCHHHHHHHHHHcC
Confidence 445566666666666553
No 306
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=37.04 E-value=42 Score=27.47 Aligned_cols=51 Identities=12% Similarity=-0.020 Sum_probs=25.0
Q ss_pred cccCcHHHHHHHHHHHHhCCCCCChHh-------HHHHHHHHH--hcCChhHHHHHHHHH
Q 010383 5 CGLSRVGEAHKLFFDMKSRGHVPNVVS-------YTTLIHGYC--RTGEMDVAYKVFDEM 55 (512)
Q Consensus 5 ~~~g~~~~A~~~~~~~~~~~~~~~~~~-------~~~l~~~~~--~~~~~~~a~~~~~~m 55 (512)
++.|+.+....+++.+.+.|..++... .+.|..+.. +.|+.+-+..+++.-
T Consensus 13 ~~~g~~~~v~~ll~~l~~~~~~~~~~~~~~~~~g~t~L~~A~~~~~~g~~~~v~~Ll~~g 72 (260)
T 3jxi_A 13 VSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPILLDIA 72 (260)
T ss_dssp HHHTCGGGGTTHHHHHHHHTCCTTSGGGSCTTTCCCHHHHHHTSCBTTBCTHHHHHHHHH
T ss_pred HHhCCHHHHHHHHHHHHhcCCCcchhhhhccCCCCcHHHHHHHHhhcCCHHHHHHHHHhc
Confidence 345666666666666555554444222 222222221 456666555555544
No 307
>3kae_A CDC27, possible protein of nuclear scaffold; tetratricopeptide repeat protein, protein binding; 2.30A {Encephalitozoon cuniculi}
Probab=36.57 E-value=1.4e+02 Score=22.74 Aligned_cols=97 Identities=15% Similarity=0.093 Sum_probs=50.9
Q ss_pred HhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCCHHH
Q 010383 325 LLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQLDE 404 (512)
Q Consensus 325 ~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~ 404 (512)
+.-.|.+..++-++.. +. ..+..-|..+ +|-+..++..|...++.+.+..+..|+.+-..
T Consensus 43 LyyngEY~R~Lf~L~~-lN----T~Ts~YYk~L--Cy~klKdYkkA~~~le~il~~kvd~d~~~d~~------------- 102 (242)
T 3kae_A 43 LYLNGEYTRALFHLHK-LN----TCTSKYYESL--CYKKKKDYKKAIKSLESILEGKVERDPDVDAR------------- 102 (242)
T ss_dssp HHHTTCHHHHHHHHHT-CC----BHHHHHHHHH--HHHHTTCHHHHHHHHHHHHTTCSBCCCCCCHH-------------
T ss_pred hhhcchHhHHHHHHHh-cc----hHHHHHHHHH--HHHHHHHHHHHHHHHHHHHhcccccCcccccc-------------
Confidence 3446777777766644 10 1111112222 45567777777777777775444322211000
Q ss_pred HHHHHHHhhcCCCCCCH-HhHHHHHHHHHhcCCHHHHHHHHHHH
Q 010383 405 AKRFWDDIVWPSNIHDN-YVYAAMIKGLCRSGKIHEAVHFLYEL 447 (512)
Q Consensus 405 a~~~~~~~~~~~~~~~~-~~~~~l~~~~~~~g~~~~a~~~~~~~ 447 (512)
++.+. -+ +.|. ..++.+...|...|+.++|+..+..-
T Consensus 103 ----~~~ff-vd-~~DkEfFy~l~a~lltq~g~r~EaI~y~~~S 140 (242)
T 3kae_A 103 ----IQEMF-VD-PGDEEFFESLLGDLCTLSGYREEGIGHYVRS 140 (242)
T ss_dssp ----HHTTS-CC-TTCHHHHHHHHHHHHHHTTCHHHHHHHHHHH
T ss_pred ----cceee-ec-cchHHHHHHHHHHHHHHhcCHHHhhhHhhhh
Confidence 01111 01 2233 35667777888889999998887653
No 308
>2fe3_A Peroxide operon regulator; oxidative stress regulator, DNA binding protein; 1.75A {Bacillus subtilis} PDB: 3f8n_A 2rgv_A*
Probab=35.54 E-value=1.3e+02 Score=21.99 Aligned_cols=59 Identities=10% Similarity=-0.101 Sum_probs=28.0
Q ss_pred HHHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC
Q 010383 164 VMRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223 (512)
Q Consensus 164 ~~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (512)
.+.+.|++++.. -..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|
T Consensus 12 ~l~~~g~r~T~q-R~~Il~~L~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 70 (145)
T 2fe3_A 12 TLKETGVRITPQ-RHAILEYLVNSMAHPTADDIYKALEGKFPNMSVATVYNNLRVFRESG 70 (145)
T ss_dssp HHHHTTCCCCHH-HHHHHHHHHHCSSCCCHHHHHHHHGGGCTTCCHHHHHHHHHHHHHTT
T ss_pred HHHHcCCCCCHH-HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCChhhHHHHHHHHHHCC
Confidence 344555553332 22334444444455566666666665544444444433444444433
No 309
>2keb_A DNA polymerase subunit alpha B; DNA polymerase alpha, DNA replication, nucleus, phosphoprote binding protein; HET: DNA; NMR {Homo sapiens}
Probab=35.34 E-value=1e+02 Score=20.72 Aligned_cols=57 Identities=9% Similarity=0.074 Sum_probs=32.8
Q ss_pred HHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHH-----HHCCCCCChHHHHHHH
Q 010383 440 AVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILREM-----RKNGLNPDAVTWRILD 498 (512)
Q Consensus 440 a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~m-----~~~~~~p~~~~~~~l~ 498 (512)
|.++.+++...|+.|+..+..-++..|..-+- + +.++.++. ...|..|+..+++.+-
T Consensus 28 ae~L~eEfdefGi~~~d~VldKc~ELC~~y~l-d-a~e~VeeWmAFsts~~g~~pT~enL~~FE 89 (101)
T 2keb_A 28 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQ-N-EEGMVGELIAFCTSTHKVGLTSEILNSFE 89 (101)
T ss_dssp HHHHHHHHHHHTCBCCHHHHHHHHHHHHHHTC-C-HHHHHHHHHHHHHHHTCSBCCHHHHHHHH
T ss_pred HHHHHHHHHHcCCCCCHHHHHHHHHHHHHcCC-C-HHHHHHHHHHHHHhcCCCCCCHHHHHHHH
Confidence 45555666666777777777777776665553 1 33332222 2446677776666554
No 310
>2xig_A Ferric uptake regulation protein; hpfur, transcription, homeostasis; HET: CIT; 1.85A {Helicobacter pylori}
Probab=34.96 E-value=1.3e+02 Score=22.15 Aligned_cols=58 Identities=19% Similarity=0.135 Sum_probs=25.8
Q ss_pred HHHcCCCCCcchHHHHHHHHhccCchhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccC
Q 010383 165 MRKRGLTPSLVSYNSIVHGLCKHGGCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGES 223 (512)
Q Consensus 165 ~~~~g~~p~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 223 (512)
+.+.|+.++. .-..++..+...+..-.|.++++.+.+.+...+..|.--.+..+...|
T Consensus 18 l~~~g~r~T~-qR~~IL~~l~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~G 75 (150)
T 2xig_A 18 IKKNGLKNSK-QREEVVSVLYRSGTHLSPEEITHSIRQKDKNTSISSVYRILNFLEKEN 75 (150)
T ss_dssp HHHCC--CHH-HHHHHHHHHHHCSSCBCHHHHHHHHHHHSTTCCHHHHHHHHHHHHHTT
T ss_pred HHHcCCCCCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 4445554332 222334444444455566666666655544444444333344443333
No 311
>3ygs_P Procaspase 9; apoptosis, caspase activation, caspase recruitment, recognition complex; 2.50A {Homo sapiens} SCOP: a.77.1.3
Probab=34.71 E-value=86 Score=20.99 Aligned_cols=64 Identities=14% Similarity=0.075 Sum_probs=40.1
Q ss_pred HHHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHH
Q 010383 15 KLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERAN 84 (512)
Q Consensus 15 ~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~ 84 (512)
.+++.+.+.|+- +..-...+-. .......++|.++++.+.++| +.+|..++.++...++..-|.
T Consensus 25 ~vld~L~~~~vl-t~~~~e~I~~-~~~~t~~~~ar~Lld~L~~rG----~~Af~~F~~aL~et~~~~La~ 88 (97)
T 3ygs_P 25 QLWDVLLSRELF-RPHMIEDIQR-AGSGSRRDQARQLIIDLETRG----SQALPLFISCLEDTGQDMLAS 88 (97)
T ss_dssp TTHHHHHHTTSS-CHHHHHHHHT-STTCCHHHHHHHHHHHHTTSC----TTHHHHHHHHHHTTTCHHHHH
T ss_pred HHHHHHHHcCCC-CHHHHHHHHh-ccCCChHHHHHHHHHHHHHcC----hHHHHHHHHHHHHcCcHHHHH
Confidence 367777777654 3333333222 101246788999999888764 456778888887767766553
No 312
>2fu4_A Ferric uptake regulation protein; DNA binding domain, helix-turn-helix, DNA binding protein; 1.80A {Escherichia coli}
Probab=34.66 E-value=88 Score=19.86 Aligned_cols=61 Identities=10% Similarity=0.010 Sum_probs=38.3
Q ss_pred HHHhCCCCCChHhHHHHHHHHHhcC-ChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCCh
Q 010383 19 DMKSRGHVPNVVSYTTLIHGYCRTG-EMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDV 80 (512)
Q Consensus 19 ~~~~~~~~~~~~~~~~l~~~~~~~~-~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~ 80 (512)
.+.+.|.+.+..- ..++..+...+ ..-.+.++++.+.+.+...+..|-...+..+...|-.
T Consensus 7 ~l~~~g~~~t~~r-~~IL~~l~~~~~~~~s~~el~~~l~~~~~~is~~TVyR~L~~L~~~Glv 68 (83)
T 2fu4_A 7 ALKKAGLKVTLPR-LKILEVLQEPDNHHVSAEDLYKRLIDMGEEIGLATVYRVLNQFDDAGIV 68 (83)
T ss_dssp HHHHTTCCCCHHH-HHHHHHHTSGGGSSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHHHTSE
T ss_pred HHHHcCCCcCHHH-HHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCe
Confidence 4556677765543 45666666554 5667788888887765555666666666666665543
No 313
>2uwj_G Type III export protein PSCG; virulence, chaperones, coiled coil, needle formation, type III secretion, bacterial pathogenicity; 2.0A {Pseudomonas aeruginosa}
Probab=34.31 E-value=1.1e+02 Score=20.78 Aligned_cols=78 Identities=23% Similarity=0.146 Sum_probs=47.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010383 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373 (512)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 373 (512)
..++|..+-+-+...+ . ....--+-+..+.+.|++++|..+.+. ...||...|.++.. .+.|-.+++...
T Consensus 21 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~-----~c~pdlepw~ALce--~rlGl~s~le~r 90 (115)
T 2uwj_G 21 CHEEALCIAEWLERLG--Q-DEAARLIRISSLANQGRYQEALAFAHG-----NPWPALEPWFALCE--WHLGLGAALDRR 90 (115)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHGGGTT-----CCCGGGHHHHHHHH--HHTTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCC-----CCCchHHHHHHHHH--HhcccHHHHHHH
Confidence 4566666666555533 1 222222234456778888888775533 22677777766543 477777788777
Q ss_pred HHHHHhCC
Q 010383 374 FNCMLGIG 381 (512)
Q Consensus 374 ~~~~~~~~ 381 (512)
+.++..+|
T Consensus 91 L~~la~sg 98 (115)
T 2uwj_G 91 LAGLGGSS 98 (115)
T ss_dssp HHHHHTCS
T ss_pred HHHHHhCC
Confidence 77777766
No 314
>1mzb_A Ferric uptake regulation protein; ferric uptake regulator, iron, DTXR, gene regulation; 1.80A {Pseudomonas aeruginosa} SCOP: a.4.5.42
Probab=34.07 E-value=1.2e+02 Score=21.78 Aligned_cols=56 Identities=20% Similarity=0.113 Sum_probs=25.4
Q ss_pred HHHcCCCCCcchHHHHHHHHhccC-chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhc
Q 010383 165 MRKRGLTPSLVSYNSIVHGLCKHG-GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCG 221 (512)
Q Consensus 165 ~~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~ 221 (512)
+++.|++++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.---+..+..
T Consensus 9 l~~~g~r~T~q-R~~Il~~L~~~~~~~~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e 65 (136)
T 1mzb_A 9 LRKAGLKVTLP-RVKILQMLDSAEQRHMSAEDVYKALMEAGEDVGLATVYRVLTQFEA 65 (136)
T ss_dssp HHHTTCCCCHH-HHHHHHHHHCC-CCSBCHHHHHHHHHHTTCCCCHHHHHHHHHHHHH
T ss_pred HHHCCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHhhCCCCCHHHHHHHHHHHHH
Confidence 44455553332 223334444444 455566666666655444444443333333333
No 315
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=34.05 E-value=51 Score=23.96 Aligned_cols=60 Identities=12% Similarity=0.079 Sum_probs=38.5
Q ss_pred HhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 21 KSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 21 ~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
.+.|.+++. .-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 6 r~~g~r~T~-qR~~Il~~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~ 65 (139)
T 3mwm_A 6 PPVKGRATR-QRAAVSAALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVD 65 (139)
T ss_dssp ----CHHHH-HHHHHHHHHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSE
T ss_pred CCCCCccCH-HHHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEE
Confidence 344555322 345667777777778889999999988776667777666667666666544
No 316
>2ion_A PDCD4, programmed cell death 4, PDCD4; alpha-helical, antitumor protein; 1.57A {Mus musculus} SCOP: a.118.1.14 PDB: 2ios_A 2iol_A
Probab=33.96 E-value=1.4e+02 Score=22.07 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=40.2
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC--HHHHHHHHHHhhcCCCC
Q 010383 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ--LDEAKRFWDDIVWPSNI 418 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 418 (512)
....++.-|...|+.++|...++++.... -....+...+..++-+.++ .+.+..++..+...++-
T Consensus 11 ki~~lL~EY~~~~D~~EA~~cl~EL~~p~-f~~e~V~~~i~~alE~~~~~~re~~~~LL~~L~~~~~i 77 (152)
T 2ion_A 11 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 77 (152)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHhCCCHHHHHHHHHHhCCCc-chHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 46678899999999999999999985311 1112234444455554322 34566666666655533
No 317
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin repeats, ANK repeat, ION transport, ionic channel, R transmembrane, transport; 2.30A {Gallus gallus} PDB: 3jxj_A 4dx1_A 4dx2_A*
Probab=33.36 E-value=96 Score=25.19 Aligned_cols=14 Identities=21% Similarity=0.392 Sum_probs=6.8
Q ss_pred hcCChhhHHHHHHH
Q 010383 151 RSGRNHGASRVVYV 164 (512)
Q Consensus 151 ~~~~~~~a~~~~~~ 164 (512)
+.|..+-+.-+++.
T Consensus 58 ~~g~~~~v~~Ll~~ 71 (260)
T 3jxi_A 58 SAGRNDTIPILLDI 71 (260)
T ss_dssp BTTBCTHHHHHHHH
T ss_pred hcCCHHHHHHHHHh
Confidence 34555555444444
No 318
>2jul_A Calsenilin; EF-hand, calcium, LXXLL, DNA binding protein, dimer, alternative splicing, apoptosis, cytoplasm, endoplasmic reticulum, golgi apparatus; NMR {Mus musculus}
Probab=33.11 E-value=2e+02 Score=23.41 Aligned_cols=135 Identities=7% Similarity=-0.019 Sum_probs=61.4
Q ss_pred CCCcchHhHHHHHHHHHccC-ChhHHHHHHHhcCCCCC-CCcchhHHHHHHHHHhcCChhhHHHHHHHHHHcC-CCCCcc
Q 010383 99 DLSVNNAAFANLVDSLCREG-YVNEVFRIAEDMPQGKS-VNEEFACGHMIDSLCRSGRNHGASRVVYVMRKRG-LTPSLV 175 (512)
Q Consensus 99 ~~~~~~~~~~~l~~~~~~~g-~~~~a~~~~~~~~~~~~-~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~g-~~p~~~ 175 (512)
+-..+...+..++..+...+ ....+..+|..+...+. ..+..-+..++..+......+....+|+.+-..| -..+..
T Consensus 106 ~G~I~~~ef~~~l~~~~~~~~~~~~~~~~f~~~D~d~dG~I~~~Ef~~~l~~~~~~~~~~~l~~~F~~~D~d~dG~I~~~ 185 (256)
T 2jul_A 106 TGLVDEDTFKLIYSQFFPQGDATTYAHFLFNAFDADGNGAIHFEDFVVGLSILLRGTVHEKLKWAFNLYDINKDGCITKE 185 (256)
T ss_dssp TSSEEHHHHHHHHHHHCCSSCCHHHHHHHHHHSSCSCCSEECSHHHHHHHHHHHSCCHHHHHHHHHHHTCCSSSSCBCHH
T ss_pred CCcCCHHHHHHHHHHHcccCCcHHHHHHHHHHhccCCCCcCcHHHHHHHHHHHhccChHHHHHHHHHHhCCCCCCcCcHH
Confidence 34455555555555443222 23456667776654331 1222223333333333333344555555543221 111233
Q ss_pred hHHHHHHHHh-ccC-----------chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCCHHHHHHHHHHH
Q 010383 176 SYNSIVHGLC-KHG-----------GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESDLEKARKVLQFM 235 (512)
Q Consensus 176 ~~~~l~~~~~-~~~-----------~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~ 235 (512)
-+..++..+. ..| ..+.+..+|..+-..+ ....++.-++..+.+...+-.+...|+.+
T Consensus 186 Ef~~~l~~~~~~~g~~~~~~~~~~~~~~~~~~~f~~~D~d~--dG~Is~~Ef~~~~~~~~~l~~~l~~~d~~ 255 (256)
T 2jul_A 186 EMLAIMKSIYDMMGRHTYPILREDAPLEHVERFFQKMDRNQ--DGVVTIDEFLETCQKDENIMNSMQLFENV 255 (256)
T ss_dssp HHHHHHHHHHHHCCCCCSCCSCCCCHHHHHHHHHHHSCCST--TCSBCHHHHHHHHHHCSSHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCCCCCcccchhhHHHHHHHHHHHHCCCC--CCcEeHHHHHHHHHhCHHHHHHHHhhccc
Confidence 3333333221 112 2344555665553221 12346666777777777777777776654
No 319
>2w57_A Ferric uptake regulation protein; gene regulation, transcription regulation, transport, iron, repressor, DNA-binding, transcription; 2.60A {Vibrio cholerae}
Probab=33.08 E-value=1.4e+02 Score=21.99 Aligned_cols=59 Identities=17% Similarity=0.111 Sum_probs=27.9
Q ss_pred HHHcCCCCCcchHHHHHHHHhccC-chhHHHHHHHHHHhCCCCCchhhHHHHHHHHhccCC
Q 010383 165 MRKRGLTPSLVSYNSIVHGLCKHG-GCMRAYQLLEEGIQFGYLPSEHTYKVLVEGLCGESD 224 (512)
Q Consensus 165 ~~~~g~~p~~~~~~~l~~~~~~~~-~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~ 224 (512)
+.+.|+.++.. -..++..+...+ ..-.|.++++.+.+.+...+..|.--.+..+...|-
T Consensus 8 l~~~g~r~T~q-R~~Il~~L~~~~~~h~sa~ei~~~l~~~~~~is~aTVYR~L~~L~e~Gl 67 (150)
T 2w57_A 8 LKDAGLKVTLP-RLKILEVLQQPECQHISAEELYKKLIDLGEEIGLATVYRVLNQFDDAGI 67 (150)
T ss_dssp HHHTTCCCCHH-HHHHHHHHTSGGGSSEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTS
T ss_pred HHHcCCCCCHH-HHHHHHHHHhCCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCc
Confidence 44555553332 223334444444 455566666666655444444444334444444443
No 320
>2p58_C Putative type III secretion protein YSCG; type III secretion system, structure, needle protein, YSCE, YSCF, transport protein/chaperone complex; 1.80A {Yersinia pestis}
Probab=32.76 E-value=1.2e+02 Score=20.68 Aligned_cols=78 Identities=17% Similarity=0.106 Sum_probs=45.1
Q ss_pred CHHHHHHHHHHHhhCCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHH
Q 010383 294 RIEEALKVLNDMVAGKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEV 373 (512)
Q Consensus 294 ~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~ 373 (512)
..++|..+-+-+...+ . ....--+-+..+.+.|++++|..+.+.. ..||...|.++.. .+.|-.+++...
T Consensus 22 ~HqEA~tIAdwL~~~~--~-~E~v~lIR~sSLmNrG~Yq~Al~l~~~~-----c~pdlepw~ALce--~rlGl~s~le~r 91 (116)
T 2p58_C 22 YHEEANCIAEWLHLKG--E-EEAVQLIRLSSLMNRGDYASALQQGNKL-----AYPDLEPWLALCE--YRLGLGSALESR 91 (116)
T ss_dssp CHHHHHHHHHHHHHTT--C-HHHHHHHHHHHHHHTTCHHHHHHHHTTS-----CCGGGHHHHHHHH--HHHTCHHHHHHH
T ss_pred HHHHHHHHHHHHHhCC--c-HHHHHHHHHHHHHcchhHHHHHHhcCCC-----CCchHHHHHHHHH--HhcccHHHHHHH
Confidence 4556666655555433 1 2222222234566778888887766441 2677776665543 467777777777
Q ss_pred HHHHHhCC
Q 010383 374 FNCMLGIG 381 (512)
Q Consensus 374 ~~~~~~~~ 381 (512)
+.++..+|
T Consensus 92 L~~la~sg 99 (116)
T 2p58_C 92 LNRLARSQ 99 (116)
T ss_dssp HHHHTTCC
T ss_pred HHHHHhCC
Confidence 76776665
No 321
>4gq2_M Nucleoporin NUP120; beta propeller alpha helical, component of nuclear pore COMP transport protein; 2.40A {Schizosaccharomyces pombe} PDB: 4fhm_B
Probab=32.67 E-value=4.2e+02 Score=27.08 Aligned_cols=131 Identities=12% Similarity=0.114 Sum_probs=60.1
Q ss_pred HHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcC
Q 010383 321 IIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESN 400 (512)
Q Consensus 321 l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g 400 (512)
++..+...+.++-+.++. ... +.++..--.+..+|...|++++|...|++... |+..+......
T Consensus 816 l~~~L~~~~~~~~a~eL~-~~~-----~~t~~~~yv~gr~~L~~ge~~~A~~~F~kAA~-gl~~~~~~~~~--------- 879 (950)
T 4gq2_M 816 LVEKLFLFKQYNACMQLI-GWL-----NSDPIAVYLKALIYLKSKEAVKAVRCFKTTSL-VLYSHTSQFAV--------- 879 (950)
T ss_dssp HHHHHHHTTCHHHHHHHG-GGC-----CSSHHHHHHHHHHHHHTTCHHHHHHHHHTCCC-TTCSSCCSCGG---------
T ss_pred HHHHHHHhcHHHHHHHHH-hhc-----CCChHHHHHHHHHHHHcCCHHHHHHHHHHHhh-hcccCcccccc---------
Confidence 455566666666655433 222 22332223455667777777777777766532 32221111000
Q ss_pred CHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCCh----hhHHHHHHHHHhcC
Q 010383 401 QLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNI----VCYNVVIDGACKLS 470 (512)
Q Consensus 401 ~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~----~~~~~l~~~~~~~g 470 (512)
......++.... . ......-|..++..+-+.+.++.+.++-+..++.--.-|. ..|..+.++.+..|
T Consensus 880 -~~~~~~ll~~~e-~-~~~~~~YY~hV~~LFE~~~a~~~vi~fA~lAI~~~~~dd~~l~~~l~~r~f~~a~a~g 950 (950)
T 4gq2_M 880 -LREFQEIAEKYH-H-QNLLSCYYLHLSKKLFEESAYIDALEFSLLADASKETDDEDLSIAITHETLKTACAAG 950 (950)
T ss_dssp -GHHHHHHHHHTT-T-CSHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHTCCSCCHHHHHHHHHHHHHHHHHHC
T ss_pred -hhhhhhccCccc-c-cchhHHHHHHHHHHHHhcCCHHHHHHHHHHHHhhcccCCccchHHHHHHHHHHHhhCC
Confidence 001111111110 0 0112224566666666666676666666666553211122 24555555555443
No 322
>2cwy_A Hypothetical protein TTHA0068; structural genomics, conserved hypothetical protein, NPPSFA; 1.85A {Thermus thermophilus} SCOP: a.246.2.1 PDB: 2cxd_A
Probab=32.48 E-value=43 Score=22.39 Aligned_cols=51 Identities=10% Similarity=-0.076 Sum_probs=22.3
Q ss_pred CChhHHHHHHHHHHhCCCCCChhhHHHHHHHHH-----hcCChhhHHHHHHHHHHHhh
Q 010383 43 GEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVL-----RTRDVERANVLMFKLWERMK 95 (512)
Q Consensus 43 ~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~-----~~~~~~~a~~~~~~~~~~~~ 95 (512)
|++-+|-++++..=.....|....|..+|.... +.|+. |..++.+....+.
T Consensus 15 g~~~eaHEvlE~~W~~~~~~~~~~~qGLIq~Ava~~h~~~gn~--a~~ll~~a~~~L~ 70 (94)
T 2cwy_A 15 GRYYEVHEVLEPYWLKATGEERRLLQGVILLAAALHQRRLGRP--GLRNLRKAEARLE 70 (94)
T ss_dssp TCHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHTTCC--CHHHHHHHHHHHT
T ss_pred CChHHHHHHHHHHHhhCCCchHHHHHHHHHHHHHHHHHHcCcH--HHHHHHHHHHHHH
Confidence 555555555555544321122333444443221 23444 5555555554443
No 323
>4aez_C MAD3, mitotic spindle checkpoint component MAD3; cell cycle, KEN-BOX, D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
Probab=32.39 E-value=1.9e+02 Score=23.10 Aligned_cols=51 Identities=16% Similarity=-0.014 Sum_probs=28.4
Q ss_pred HHHHHHHHHHhCCCCC-chhhHHHHHHHHhccCCHHHHHHHHHHHHhCCCCC
Q 010383 192 RAYQLLEEGIQFGYLP-SEHTYKVLVEGLCGESDLEKARKVLQFMLSKKDVD 242 (512)
Q Consensus 192 ~a~~~~~~~~~~~~~~-~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~ 242 (512)
.+.++|..|...|+-. -...|......+...|++.+|.++|+.-.+.+-.|
T Consensus 132 ~p~~if~~L~~~~IG~~~AlfYe~wA~~lE~~g~~~~A~~Vy~~Gi~~~A~P 183 (223)
T 4aez_C 132 EPVELFSFLAHHHIGQESSIFYEEYANYFESRGLFQKADEVYQKGKRMKAKP 183 (223)
T ss_dssp CHHHHHHHHHHTTCSTTBHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHTCBS
T ss_pred CHHHHHHHHHHCCcchhHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHcCCcc
Confidence 4555666666554433 33445555555666666666666666655544443
No 324
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=32.27 E-value=85 Score=22.45 Aligned_cols=50 Identities=14% Similarity=0.075 Sum_probs=35.7
Q ss_pred HHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChh
Q 010383 32 YTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVE 81 (512)
Q Consensus 32 ~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~ 81 (512)
-..++..+...+..-.|.++++.+.+.+...+..|....+..+...|-..
T Consensus 13 R~~Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~Glv~ 62 (131)
T 2o03_A 13 RAAISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSGLVD 62 (131)
T ss_dssp HHHHHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTTSEE
T ss_pred HHHHHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCCCEE
Confidence 34566667677778889999999988765566777666677776666544
No 325
>2ijq_A Hypothetical protein; structural genomics, PSI, protein structure initiative, NEW YORK SGX research center for structural genomics; 1.88A {Haloarcula marismortui} SCOP: a.246.2.1
Probab=32.12 E-value=1.6e+02 Score=22.09 Aligned_cols=49 Identities=14% Similarity=0.014 Sum_probs=23.0
Q ss_pred CChhHHHHHHHhcCCCCCCC--cchhHHHHHH-H-----HHhcCChhhHHHHHHHHH
Q 010383 118 GYVNEVFRIAEDMPQGKSVN--EEFACGHMID-S-----LCRSGRNHGASRVVYVMR 166 (512)
Q Consensus 118 g~~~~a~~~~~~~~~~~~~~--~~~~~~~l~~-~-----~~~~~~~~~a~~~~~~~~ 166 (512)
|++=+|-++++..-.....+ ....|..||. . ..+.|+...|..++.+..
T Consensus 46 g~yfeaHEvLEe~W~~~~~~~~er~~lqGLIQ~lAvAl~H~~rgN~~GA~~ll~~Al 102 (161)
T 2ijq_A 46 GEFHESHDCFEDEWYNYGRGNTESKFLHGMVQVAAGAYKHFDFEDDDGMRSLFRTSL 102 (161)
T ss_dssp TCHHHHHHHHHHHTTTTCSSSHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHH
Confidence 55556655555554443333 3334444444 1 223455555555554443
No 326
>3ltm_A Alpha-REP4; protein engineering, heat-like repeat, protein binding; HET: 1PE 12P; 2.15A {Synthetic}
Probab=32.07 E-value=1.8e+02 Score=22.58 Aligned_cols=49 Identities=6% Similarity=-0.032 Sum_probs=22.9
Q ss_pred CChHhHHHHHHHHHhcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 010383 27 PNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79 (512)
Q Consensus 27 ~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 79 (512)
++...-...+..+.+.+..+ +...+.++... +|...-...+.++...++
T Consensus 31 ~~~~vR~~A~~~L~~~~~~~-~~~~L~~~l~~---~~~~vr~~a~~aL~~~~~ 79 (211)
T 3ltm_A 31 DSYYVRRAAAYALGKIGDER-AVEPLIKALKD---EDAWVRRAAADALGQIGD 79 (211)
T ss_dssp SSHHHHHHHHHHHHHHCCGG-GHHHHHHHTTC---SCHHHHHHHHHHHHHHCC
T ss_pred CCHHHHHHHHHHHHHhCCcc-HHHHHHHHHcC---CCHHHHHHHHHHHHhhCC
Confidence 34555555555555555532 33333333332 344444444555555444
No 327
>4b4t_O 26S proteasome regulatory subunit RPN9; hydrolase, AAA-atpases, protein degradation, ubiquitin-prote pathway; 7.40A {Saccharomyces cerevisiae}
Probab=31.50 E-value=2.8e+02 Score=24.63 Aligned_cols=89 Identities=16% Similarity=0.171 Sum_probs=54.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCC----------------CCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcC
Q 010383 35 LIHGYCRTGEMDVAYKVFDEMRHCGV----------------LPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEE 98 (512)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~m~~~~~----------------~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~ 98 (512)
++.......+.+++.+.++++...-. .+-......+.+.+...++.+.|...+.++-..+....
T Consensus 82 ~~~~~~~~~d~~~al~~L~~~~~~~~~~~~~~~~~~~~~~~~ea~l~i~~~i~~~yl~~~d~~~a~~~l~~~~~~l~~~~ 161 (393)
T 4b4t_O 82 LLASLKDSKDFDESLKYLDDLKAQFQELDSKKQRNNGSKDHGDGILLIDSEIARTYLLKNDLVKARDLLDDLEKTLDKKD 161 (393)
T ss_dssp THHHHHHTTCHHHHHHHHHHHTTTSHHHHSSCCCCCCSSSSCCSHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHSC
T ss_pred HHHHHhhcCCHHHHHHHHHHHHHHHhhhhhhhhcccchhhhhhhHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHhhhccC
Confidence 44556677888999999987743210 11112334456777888999999888888766666554
Q ss_pred CCCcc--hHhHHHHHHHHHccCChhHH
Q 010383 99 DLSVN--NAAFANLVDSLCREGYVNEV 123 (512)
Q Consensus 99 ~~~~~--~~~~~~l~~~~~~~g~~~~a 123 (512)
+..+. ...|......+...+++..+
T Consensus 162 ~~~~~v~~~~y~~~~~~~~~~~~~a~~ 188 (393)
T 4b4t_O 162 SIPLRITNSFYSTNSQYFKFKNDFNSF 188 (393)
T ss_dssp CSSSHHHHHHHHHHHHHHHHTTCHHHH
T ss_pred CccHHHHHHHHHHHHHHHHHhhhHHHH
Confidence 44442 33445555555566665544
No 328
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=30.98 E-value=2e+02 Score=22.75 Aligned_cols=29 Identities=10% Similarity=0.156 Sum_probs=18.7
Q ss_pred HHHHHHhcCChhHHHHHHHHHHhCCCCCC
Q 010383 35 LIHGYCRTGEMDVAYKVFDEMRHCGVLPN 63 (512)
Q Consensus 35 l~~~~~~~~~~~~a~~~~~~m~~~~~~~~ 63 (512)
.+...++.|+.+.+..+++.+.+.+..++
T Consensus 12 ~L~~A~~~g~~~~v~~Ll~~~~~~~~~~~ 40 (241)
T 1k1a_A 12 PLHIAVVQGNLPAVHRLVNLFQQGGRELD 40 (241)
T ss_dssp HHHHHHHTTCHHHHHHHHHHHHHTTCCSC
T ss_pred HHHHHHHcCCHHHHHHHHHHHHhcCCCCC
Confidence 44555667888777777776666554443
No 329
>4ets_A Ferric uptake regulation protein; metal binding protein, transcription factor; 2.10A {Campylobacter jejuni subsp}
Probab=30.71 E-value=1.3e+02 Score=22.58 Aligned_cols=23 Identities=0% Similarity=0.008 Sum_probs=10.1
Q ss_pred HHHHHHhcCCHHHHHHHHHHHhh
Q 010383 285 VINGFCKMGRIEEALKVLNDMVA 307 (512)
Q Consensus 285 l~~~~~~~~~~~~a~~~~~~~~~ 307 (512)
++..+...+..-.|.++++.+.+
T Consensus 38 IL~~L~~~~~h~sA~eI~~~l~~ 60 (162)
T 4ets_A 38 LLKTLYHSDTHYTPESLYMEIKQ 60 (162)
T ss_dssp HHHHHHSCCSCBCHHHHHHHHHH
T ss_pred HHHHHHhCCCCCCHHHHHHHHHh
Confidence 33344444444444444444443
No 330
>3bu8_A Telomeric repeat-binding factor 2; TRF2 TRFH domain TRF2 dimerization domain TIN2 peptide, alternative splicing, cell cycle, chromosomal protein; 2.15A {Homo sapiens} SCOP: a.146.1.1 PDB: 3bua_A* 1h6p_A
Probab=30.47 E-value=2e+02 Score=22.78 Aligned_cols=22 Identities=9% Similarity=0.055 Sum_probs=13.9
Q ss_pred HHHHhcCCHHHHHHHHHHHHHC
Q 010383 429 KGLCRSGKIHEAVHFLYELVDS 450 (512)
Q Consensus 429 ~~~~~~g~~~~a~~~~~~~~~~ 450 (512)
-.|.+.|.+++|.+++++....
T Consensus 122 ~VCiek~~f~kA~eiLkr~~~~ 143 (235)
T 3bu8_A 122 IICIKNKEFEKASKILKKHMSK 143 (235)
T ss_dssp HHHHHTTCHHHHHHHHHHHSTT
T ss_pred HHHHHhcchHHHHHHHHHHhcC
Confidence 3566666677777776666553
No 331
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Probab=29.96 E-value=2.4e+02 Score=23.36 Aligned_cols=231 Identities=10% Similarity=0.036 Sum_probs=0.0
Q ss_pred HHHHHHHHHhCCCCCCcccHHHHHHHHHccCChhhHHHHHHHHHhcCCCCChhhHHHHHHHHHhcCCHHHHHHHHHHHhh
Q 010383 228 ARKVLQFMLSKKDVDRTRICNIYLRALCLIKNPTELLNVLVFMLQTQCQPDVITLNTVINGFCKMGRIEEALKVLNDMVA 307 (512)
Q Consensus 228 a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 307 (512)
..++.+.+.+.+.......-...+...+..|+.+.+..+++. |..++...-.+.+...+..|+.+-+..+++.-..
T Consensus 12 ~~~v~~lL~~~~~~~~d~~g~t~L~~A~~~g~~~~v~~Ll~~----g~~~~~~~g~t~L~~A~~~g~~~~v~~Ll~~ga~ 87 (285)
T 3kea_A 12 SKQLKSFLSSKDTFKADVHGHSASYYAIADNNVRLVCTLLNA----GALKNLLENEFPLHQAATLEDTKIVKILLFSGLD 87 (285)
T ss_dssp HHHHHHHHHSTTTTCCCTTSCCHHHHHHHTTCHHHHHHHHHT----TGGGSCCTTCCHHHHHTTSSSCHHHHHHHHTTCC
T ss_pred HHHHHHHHHhCCCCccCCCCCCHHHHHHHcCCHHHHHHHHhC----CCCCCCCCCCCHHHHHHHcCCHHHHHHHHHCCCC
Q ss_pred CCCCCCcHHHHHHHHHHHhhcCCHHHHHHHHHhhcccCCCCCChhhHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChH
Q 010383 308 GKFCAPDAVTFTTIIFGLLNVGRIQEALNLLYQVMPQRGYSPGIVTYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADST 387 (512)
Q Consensus 308 ~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~ 387 (512)
.. ..+....+.+..+. ..|+.+-+..++..-..-. ..+..-+.+.+...+..|+.+ +.+.+.+.|..+...
T Consensus 88 ~~--~~d~~g~t~L~~A~-~~g~~~~v~~Ll~~ga~~~--~~~~~g~~t~L~~A~~~~~~~----~v~~Ll~~g~~~~~~ 158 (285)
T 3kea_A 88 DS--QFDDKGNTALYYAV-DSGNMQTVKLFVKKNWRLM--FYGKTGWKTSFYHAVMLNDVS----IVSYFLSEIPSTFDL 158 (285)
T ss_dssp TT--CCCTTSCCHHHHHH-HTTCHHHHHHHHHHCGGGG--GCSSSGGGSHHHHHHHTTCHH----HHHHHHTTSCTTCCC
T ss_pred CC--CcCCCCCcHHHHHH-HcCCHHHHHHHHhcCCCCC--ccCCCCCCCHHHHHHHcCCHH----HHHHHHhCCCccccc
Q ss_pred -hHHHHHHHHHhcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHH
Q 010383 388 -TYAIVIDGLCESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGA 466 (512)
Q Consensus 388 -~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~ 466 (512)
.-...+...+..|+.+-+..+++.-.... ..+..-.+..+...+..|+ .++++.+.+.|..|+......
T Consensus 159 ~~g~t~L~~A~~~g~~~~v~~Ll~~gad~n-~~~~~g~t~~L~~A~~~~~----~~~v~~Ll~~gad~~~~~~~a----- 228 (285)
T 3kea_A 159 AILLSCIHITIKNGHVDMMILLLDYMTSTN-TNNSLLFIPDIKLAIDNKD----IEMLQALFKYDINIYSANLEN----- 228 (285)
T ss_dssp STHHHHHHHHHHTTCHHHHHHHHHHHHHTC-TTCCCBCCTTHHHHHHHTC----HHHHHHHTTSCBCSTTTTGGG-----
T ss_pred cCCccHHHHHHHcChHHHHHHHHHcCCCCC-cccCCCCChHHHHHHHcCC----HHHHHHHHHcCCCCCCCChhh-----
Q ss_pred HhcCCHHHHHHHHHH
Q 010383 467 CKLSMKREAYQILRE 481 (512)
Q Consensus 467 ~~~g~~~~a~~~~~~ 481 (512)
...|+.+-+.-+++.
T Consensus 229 ~~~~~~~iv~~Ll~~ 243 (285)
T 3kea_A 229 VLLDDAEIAKMIIEK 243 (285)
T ss_dssp GTTTCHHHHHHHHHH
T ss_pred hhcCCHHHHHHHHHc
No 332
>2nsz_A Programmed cell death protein 4; PDCD4, tumor suppressor, translation, antitumor protein; 1.15A {Mus musculus} SCOP: a.118.1.14 PDB: 2kzt_B 2hm8_A 2ggf_A
Probab=28.61 E-value=1.6e+02 Score=20.99 Aligned_cols=65 Identities=11% Similarity=0.115 Sum_probs=40.1
Q ss_pred hHHHHHHHHHccCCHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCC--HHHHHHHHHHhhcCCCC
Q 010383 353 TYNAVLRGLFRLRRVEEAKEVFNCMLGIGVVADSTTYAIVIDGLCESNQ--LDEAKRFWDDIVWPSNI 418 (512)
Q Consensus 353 ~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~--~~~a~~~~~~~~~~~~~ 418 (512)
....++.-|...|+.++|...++++.... -....+...+..++-+.++ .+.+..++..+...++-
T Consensus 9 ki~~ll~EY~~~~D~~Ea~~cl~eL~~p~-f~~e~V~~~i~~alE~~~~~~~e~~~~LL~~L~~~~~i 75 (129)
T 2nsz_A 9 EIDMLLKEYLLSGDISEAEHCLKELEVPH-FHHELVYEAIVMVLESTGESAFKMILDLLKSLWKSSTI 75 (129)
T ss_dssp HHHHHHHHHHHHCCHHHHHHHHHHHTCGG-GHHHHHHHHHHHHHHCCSSHHHHHHHHHHHHHHHTTCS
T ss_pred HHHHHHHHHHcCCCHHHHHHHHHHhCCCc-cHHHHHHHHHHHHHcCCChHHHHHHHHHHHHHHHCCCc
Confidence 45678888999999999999999985311 0112233444455554432 34566666666655543
No 333
>3eyy_A Putative iron uptake regulatory protein; NUR, nickel-uptake regulator, D-domain, dimerization domain, DB-domain, DNA-binding domain; 2.40A {Streptomyces coelicolor}
Probab=28.40 E-value=1.2e+02 Score=22.24 Aligned_cols=22 Identities=14% Similarity=-0.126 Sum_probs=10.8
Q ss_pred hhHHHHHHHHHHhCCCCCchhh
Q 010383 190 CMRAYQLLEEGIQFGYLPSEHT 211 (512)
Q Consensus 190 ~~~a~~~~~~~~~~~~~~~~~~ 211 (512)
.-.|.++++.+.+.+...+..|
T Consensus 33 h~ta~ei~~~l~~~~~~is~~T 54 (145)
T 3eyy_A 33 HATPDDILGEVRKTASGINIST 54 (145)
T ss_dssp SBCHHHHHHHHHTTCTTCCHHH
T ss_pred CCCHHHHHHHHHhhCCCCCHhH
Confidence 4455555555555443334433
No 334
>3mwm_A ZUR, putative metal uptake regulation protein; FUR, regulatory metal, graded transcription regulation, transcription; 2.40A {Streptomyces coelicolor}
Probab=28.18 E-value=40 Score=24.54 Aligned_cols=45 Identities=20% Similarity=0.310 Sum_probs=32.8
Q ss_pred cccccCcHHHHHHHHHHHHhCCCCCChHhHHHHHHHHHhcCChhH
Q 010383 3 QLCGLSRVGEAHKLFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDV 47 (512)
Q Consensus 3 ~~~~~g~~~~A~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~ 47 (512)
.+.+.++.-.|.++++.+.+.++..+..|-...+..+...|-..+
T Consensus 22 ~L~~~~~h~sa~eI~~~l~~~~~~is~aTVYR~L~~L~e~Glv~~ 66 (139)
T 3mwm_A 22 ALQEVEEFRSAQELHDMLKHKGDAVGLTTVYRTLQSLADAGEVDV 66 (139)
T ss_dssp HHTTCSSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHHTTSSEE
T ss_pred HHHhCCCCCCHHHHHHHHHHhCCCCCHHHHHHHHHHHHHCCCEEE
Confidence 344555677788888888888777777777777787877776543
No 335
>4e2i_2 DNA polymerase alpha subunit B; replication initiation, hydrolase-DNA binding complex, hydro binding protein complex; HET: DNA; 5.00A {Homo sapiens}
Probab=27.65 E-value=1.2e+02 Score=19.32 Aligned_cols=55 Identities=11% Similarity=0.076 Sum_probs=31.3
Q ss_pred HHHHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHHHhhhcCCCCcch
Q 010383 48 AYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWERMKEEEDLSVNN 104 (512)
Q Consensus 48 a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~~~~~~~~~~~~~ 104 (512)
+.++-++...-|+.|+......++..|...+.. +..+..+++.-+....+..|+.
T Consensus 5 ~e~l~~el~~Fgi~c~d~v~eKl~ElC~~y~~~--~~e~V~ew~Afs~s~~~~~lt~ 59 (78)
T 4e2i_2 5 AQQLAEELQIFGLDCEEALIEKLVELCVQYGQN--EEGMVGELIAFCTSTHKVGLTS 59 (78)
T ss_dssp HHHHHHHHHHTTCCCCHHHHHHHHTHHHHSCCC--HHHHHHHHTTHHHHTTCCCCCT
T ss_pred HHHHHHHHHHcCCCCcHHHHHHHHHHHHHcCCC--HHHHHHHHHHHHHhcCCCCCCH
Confidence 445556666667777666666676666665542 5555555544444444455543
No 336
>2f6m_A Suppressor protein STP22 of temperature-sensitive factor receptor and arginine permease...; endosomes, trafficking complex, vacuole protei sorting, ESCRT protein complexes; HET: DDQ; 2.10A {Saccharomyces cerevisiae} SCOP: a.2.17.1 PDB: 2f66_A*
Probab=26.72 E-value=1.1e+02 Score=18.74 Aligned_cols=45 Identities=7% Similarity=0.076 Sum_probs=24.7
Q ss_pred hHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHh
Q 010383 423 VYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACK 468 (512)
Q Consensus 423 ~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~ 468 (512)
.++.++..++...-.++++..+.+..+.| ..+...|.--++.+++
T Consensus 4 l~~Qll~l~Aed~AieDaiy~L~~aL~~g-~I~l~~ylK~vR~LaR 48 (65)
T 2f6m_A 4 GLNQLYNLVAQDYALTDTIEALSRMLHRG-TIPLDTFVKQGRELAR 48 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCCHHHHHHHHHHHHH
Confidence 34455555555555666666666666665 3344455444444443
No 337
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=26.39 E-value=91 Score=21.92 Aligned_cols=43 Identities=9% Similarity=-0.079 Sum_probs=27.4
Q ss_pred HHHHHHHhCCCCCChhhHHHHHHHHHhcCChhhHHHHHHHHHH
Q 010383 50 KVFDEMRHCGVLPNSLTYSVLVRGVLRTRDVERANVLMFKLWE 92 (512)
Q Consensus 50 ~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~~~~ 92 (512)
-+|+++.+..+.|+....-.-+..+...++++.|.+++..+..
T Consensus 47 ~LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t 89 (118)
T 2yru_A 47 LLREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMV 89 (118)
T ss_dssp HHHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHH
T ss_pred HHHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHH
Confidence 3566666656655544444444556678899999888766654
No 338
>2etb_A Transient receptor potential cation channel subfamily V member 2; TRPV2, ankyrin repeat domain, transport protein; 1.65A {Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Probab=25.89 E-value=2.5e+02 Score=22.47 Aligned_cols=13 Identities=15% Similarity=0.118 Sum_probs=6.7
Q ss_pred CChhhHHHHHHHH
Q 010383 153 GRNHGASRVVYVM 165 (512)
Q Consensus 153 ~~~~~a~~~~~~~ 165 (512)
|+.+-+.-+++.-
T Consensus 57 g~~~~v~~Ll~~g 69 (256)
T 2etb_A 57 GVNACIMPLLQID 69 (256)
T ss_dssp TBCTTHHHHHHHH
T ss_pred chHHHHHHHHhcC
Confidence 5555555555443
No 339
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription factors, ikappab proteins; 1.86A {Homo sapiens} SCOP: d.211.1.1 PDB: 1k1b_A
Probab=25.35 E-value=2.5e+02 Score=22.10 Aligned_cols=27 Identities=15% Similarity=0.218 Sum_probs=13.1
Q ss_pred HHHHHhcCChhhHHHHHHHHHHcCCCC
Q 010383 146 IDSLCRSGRNHGASRVVYVMRKRGLTP 172 (512)
Q Consensus 146 ~~~~~~~~~~~~a~~~~~~~~~~g~~p 172 (512)
+...+..|+.+....+++.+.+.|..+
T Consensus 13 L~~A~~~g~~~~v~~Ll~~~~~~~~~~ 39 (241)
T 1k1a_A 13 LHIAVVQGNLPAVHRLVNLFQQGGREL 39 (241)
T ss_dssp HHHHHHTTCHHHHHHHHHHHHHTTCCS
T ss_pred HHHHHHcCCHHHHHHHHHHHHhcCCCC
Confidence 344445555555555555444444333
No 340
>2o03_A Probable zinc uptake regulation protein FURB; DNA-binding, helix-turn-helix, zinc binding, GE regulation; 2.70A {Mycobacterium tuberculosis}
Probab=24.27 E-value=1.4e+02 Score=21.25 Aligned_cols=44 Identities=16% Similarity=0.195 Sum_probs=20.8
Q ss_pred HHHHHHhcCChhhHHHHHHHHHHcCCCCCcchHHHHHHHHhccC
Q 010383 145 MIDSLCRSGRNHGASRVVYVMRKRGLTPSLVSYNSIVHGLCKHG 188 (512)
Q Consensus 145 l~~~~~~~~~~~~a~~~~~~~~~~g~~p~~~~~~~l~~~~~~~~ 188 (512)
++..+...+..-.|.++++.+.+.+...+..|.-..+..+...|
T Consensus 16 Il~~l~~~~~~~sa~ei~~~l~~~~~~is~~TVYR~L~~L~e~G 59 (131)
T 2o03_A 16 ISTLLETLDDFRSAQELHDELRRRGENIGLTTVYRTLQSMASSG 59 (131)
T ss_dssp HHHHHHHCCSCEEHHHHHHHHHHTTCCCCHHHHHHHHHHHHTTT
T ss_pred HHHHHHhCCCCCCHHHHHHHHHHhCCCCCHhhHHHHHHHHHHCC
Confidence 34444444455556666666655544444444333334433333
No 341
>3eiq_C Programmed cell death protein 4; PDCD4, anti-oncogene, apoptosis, cell cycle, nucleus, phosph RNA-binding, ATP-binding, helicase, hydrolase; 3.50A {Mus musculus}
Probab=24.06 E-value=3.6e+02 Score=23.54 Aligned_cols=25 Identities=8% Similarity=0.001 Sum_probs=15.7
Q ss_pred HHHHHHHHHccCChhhHHHHHHHHH
Q 010383 247 CNIYLRALCLIKNPTELLNVLVFML 271 (512)
Q Consensus 247 ~~~l~~~~~~~~~~~~a~~~~~~~~ 271 (512)
...++.-|...++.+++...++++.
T Consensus 57 ~~~ii~EYf~~~d~~Ea~~~l~eL~ 81 (358)
T 3eiq_C 57 LTPIIQEYFEHGDTNEVAEMLRDLN 81 (358)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTT
T ss_pred HHHHHHHHhcCCCHHHHHHHHHHhC
Confidence 4555666666677777666666543
No 342
>3lxu_X Tripeptidyl-peptidase 2; spindle complex, aminopeptidase, hydrolase, phosphoprotein, protease; 3.14A {Drosophila melanogaster}
Probab=23.93 E-value=4.6e+02 Score=27.97 Aligned_cols=79 Identities=10% Similarity=0.139 Sum_probs=49.2
Q ss_pred HHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCCHHHHHHHHHHHHHCCCCCChhhHHHHHHHHHhcCCHHHHHHHHHH
Q 010383 402 LDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGKIHEAVHFLYELVDSGVTPNIVCYNVVIDGACKLSMKREAYQILRE 481 (512)
Q Consensus 402 ~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~~~~a~~~~~~~~~~~~~p~~~~~~~l~~~~~~~g~~~~a~~~~~~ 481 (512)
.+...+.|.++.+---..|.......++-...++++-.|.+++.++.+. +|+...|..++..+...|. .....+.++
T Consensus 1265 ~~~~~~~~~el~k~~d~~d~k~~~~~~~~~~~~~~~g~~~k~l~k~~~~--k~~~~~~~~~~~~~~~l~w-~h~~~~~~~ 1341 (1354)
T 3lxu_X 1265 LAEINELYTEIIKFVDANDSKAIQFALWHAYAHGHYGRMYKYVVKLIEE--KRTRDHFVELAAINGALGH-EHIRTVINR 1341 (1354)
T ss_dssp HHHHHHHHHHHTTSSCTTSTTTHHHHHHHHHHHTCHHHHHHHHHHHHHH--TCCHHHHHHHHHHHHHHSC-HHHHHHHHH
T ss_pred HHHHHHHHHHHHhhcccCCceeehhHHHHHHHHHHHHHHHHHHHHHHhc--cccHHHHHHHHHHHHHcCC-HHHHHHHHh
Confidence 4445566666654322234333333333344678999999999999876 4677888888877777764 444455555
Q ss_pred HH
Q 010383 482 MR 483 (512)
Q Consensus 482 m~ 483 (512)
+.
T Consensus 1342 ~~ 1343 (1354)
T 3lxu_X 1342 MM 1343 (1354)
T ss_dssp HH
T ss_pred hh
Confidence 54
No 343
>2yru_A Steroid receptor RNA activator 1; SRAP, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=23.84 E-value=1.6e+02 Score=20.69 Aligned_cols=43 Identities=12% Similarity=-0.087 Sum_probs=29.9
Q ss_pred HHHHHHhCCCCCChHhHHHHHHHHHhcCChhHHHHHHHHHHhC
Q 010383 16 LFFDMKSRGHVPNVVSYTTLIHGYCRTGEMDVAYKVFDEMRHC 58 (512)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~a~~~~~~m~~~ 58 (512)
+|+.+.+..+.|++..--.-+..+...++++.|.++.-.+...
T Consensus 48 LfdkLn~~~Ls~~v~~~L~~l~~al~~~dy~~A~~ih~~l~t~ 90 (118)
T 2yru_A 48 LREQWAGGKLSIPVKKRMALLVQELLHHQWDAADDIHRSLMVD 90 (118)
T ss_dssp HHHHHHHTCSCHHHHHHHHHHHHHHHHTCHHHHHHHHHHHHHS
T ss_pred HHHHHhcCCCCHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHC
Confidence 4455555566655554455555567889999999999888764
No 344
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo sapiens} SCOP: d.211.1.0 PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A 3twq_A 3twu_A 2y0i_S*
Probab=23.37 E-value=2.2e+02 Score=20.74 Aligned_cols=19 Identities=16% Similarity=0.197 Sum_probs=10.6
Q ss_pred HHHHHccCChhHHHHHHHh
Q 010383 111 VDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 111 ~~~~~~~g~~~~a~~~~~~ 129 (512)
+...++.|+.+....+++.
T Consensus 12 l~~A~~~g~~~~v~~ll~~ 30 (165)
T 3twr_A 12 LLEAAKAGDVETVKKLCTV 30 (165)
T ss_dssp HHHHHHHTCHHHHHHHCCT
T ss_pred HHHHHHhCCHHHHHHHHHc
Confidence 3344556666666665543
No 345
>3b2a_A TON_1937, putative uncharacterized protein; heat-repeats, hypothetical, unknown function; 2.20A {Thermococcus onnurineus}
Probab=23.36 E-value=1.9e+02 Score=23.54 Aligned_cols=30 Identities=13% Similarity=0.113 Sum_probs=19.4
Q ss_pred HHHHHHHHHHhCCCCCChhhHHHHHHHHHhc
Q 010383 47 VAYKVFDEMRHCGVLPNSLTYSVLVRGVLRT 77 (512)
Q Consensus 47 ~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~ 77 (512)
.|.+++..+.. |++++..+|..++++....
T Consensus 94 ~A~r~L~~LLe-~vpL~~~~y~Kl~~aL~dl 123 (265)
T 3b2a_A 94 KALRALGYLVK-DVPMGSKTFLKAAKTLVSL 123 (265)
T ss_dssp HHHHHHHHHHT-TCCBCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHc-CCCCCHHHHHHHHHHHHHH
Confidence 35556666654 5577777777777776653
No 346
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=22.54 E-value=2.8e+02 Score=21.71 Aligned_cols=18 Identities=11% Similarity=0.087 Sum_probs=9.7
Q ss_pred cCChhhHHHHHHHHHHcC
Q 010383 152 SGRNHGASRVVYVMRKRG 169 (512)
Q Consensus 152 ~~~~~~a~~~~~~~~~~g 169 (512)
..+.+.|+-.+-+|.+.|
T Consensus 27 GSDpDAAly~LaRml~~G 44 (204)
T 2r9g_A 27 GSDVDAALHYLARLVEAG 44 (204)
T ss_dssp TTCHHHHHHHHHHHHHHT
T ss_pred cCCHHHHHHHHHHHHHcC
Confidence 345555555555555555
No 347
>3pvs_A Replication-associated recombination protein A; maintenance of genome stability Pro recombination; 2.50A {Escherichia coli}
Probab=22.42 E-value=4.4e+02 Score=23.89 Aligned_cols=54 Identities=11% Similarity=0.048 Sum_probs=30.1
Q ss_pred hcCCHHHHHHHHHHhhcCCCCCCHHhHHHHHHHHHhcCC-----HHHHHHHHHHHHHCC
Q 010383 398 ESNQLDEAKRFWDDIVWPSNIHDNYVYAAMIKGLCRSGK-----IHEAVHFLYELVDSG 451 (512)
Q Consensus 398 ~~g~~~~a~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~-----~~~a~~~~~~~~~~~ 451 (512)
+.++.+.|...+.+|.+.|..|....-..+..+.-.-|. ..-|...++.....|
T Consensus 267 rgsd~daAl~~la~ml~~Gedp~~i~rrl~~~a~edig~a~p~a~~~~~~~~~~~~~~g 325 (447)
T 3pvs_A 267 RGSAPDAALYWYARIITAGGDPLYVARRCLAIASEDVGNADPRAMQVAIAAWDCFTRVG 325 (447)
T ss_dssp HTTCHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHTTGGGCTHHHHHHHHHHHHHHHSC
T ss_pred hCCCHHHHHHHHHHHHHcCCCHHHHHHHHHHHHHhcccCCChhHHHHHHHHHHHHHHhC
Confidence 346788888888888887755544333333344433332 233444455555555
No 348
>2r9g_A AAA ATPase, central region; structural genomics, PSI-2, protein structure initia YORK SGX research center for structural genomics, nysgxrc; 2.09A {Enterococcus faecium} SCOP: a.80.1.2 PDB: 2qw6_A
Probab=21.61 E-value=2.9e+02 Score=21.60 Aligned_cols=47 Identities=17% Similarity=0.203 Sum_probs=28.3
Q ss_pred HHHHHHHHH---hcCChhHHHHHHHHHHhCCCCCChhhHHHHHHHHHhcCC
Q 010383 32 YTTLIHGYC---RTGEMDVAYKVFDEMRHCGVLPNSLTYSVLVRGVLRTRD 79 (512)
Q Consensus 32 ~~~l~~~~~---~~~~~~~a~~~~~~m~~~~~~~~~~~~~~l~~~~~~~~~ 79 (512)
..-+|+++. |..+++.|+-.+.+|.+.| .|....-..++.+.-.-|.
T Consensus 14 HYd~iSAf~KSiRGSDpDAAly~LaRml~~G-Dp~~IaRRLvi~AsEDIGl 63 (204)
T 2r9g_A 14 HYDVISAFQKSIRGSDVDAALHYLARLVEAG-DLASICRRLMVIGYEDIGL 63 (204)
T ss_dssp HHHHHHHHHHHHHTTCHHHHHHHHHHHHHHT-CHHHHHHHHHHHHHHTTGG
T ss_pred HHHHHHHHHHHHhcCCHHHHHHHHHHHHHcC-CHHHHHHHHHHHHHhhccC
Confidence 344555554 4578888888888888887 4444434444444444443
No 349
>3mv2_A Coatomer subunit alpha; vesicular membrane coat COAT protein complex I, protein TRAN; 2.90A {Saccharomyces cerevisiae} PDB: 3mv3_A
Probab=21.20 E-value=3.9e+02 Score=22.88 Aligned_cols=27 Identities=7% Similarity=-0.086 Sum_probs=16.3
Q ss_pred HHHHHHHccCChhHHHHHHHhcCCCCC
Q 010383 109 NLVDSLCREGYVNEVFRIAEDMPQGKS 135 (512)
Q Consensus 109 ~l~~~~~~~g~~~~a~~~~~~~~~~~~ 135 (512)
.-+....+.+++..|..+.+++.+.++
T Consensus 212 ~AM~~a~K~KNy~tAa~fArrLLel~p 238 (325)
T 3mv2_A 212 VAMSQHFKHKNFLQASYFAGEFLKIIS 238 (325)
T ss_dssp HHHHHHHHTTCHHHHHHHHHHHHTTCC
T ss_pred HHHHHHHHhhhHHHHHHHHHHHHhcCC
Confidence 355556666666666666666665543
No 350
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A {Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Probab=21.12 E-value=2.3e+02 Score=20.26 Aligned_cols=19 Identities=26% Similarity=0.350 Sum_probs=12.3
Q ss_pred HHHHHccCChhHHHHHHHh
Q 010383 111 VDSLCREGYVNEVFRIAED 129 (512)
Q Consensus 111 ~~~~~~~g~~~~a~~~~~~ 129 (512)
+...+..|+.+.+..+++.
T Consensus 6 L~~A~~~g~~~~v~~ll~~ 24 (156)
T 1bd8_A 6 LSGAAARGDVQEVRRLLHR 24 (156)
T ss_dssp HHHHHHHTCHHHHHHHHHT
T ss_pred HHHHHHhCCHHHHHHHHHh
Confidence 3445566777777777766
No 351
>1ug3_A EIF4GI, eukaryotic protein synthesis initiation factor 4G; heat repeat, translation; 2.24A {Homo sapiens} SCOP: a.118.1.14 a.118.1.14
Probab=20.27 E-value=4.2e+02 Score=22.84 Aligned_cols=25 Identities=12% Similarity=0.464 Sum_probs=19.4
Q ss_pred HHHHHHHHHhcCCHHHHHHHHHHHh
Q 010383 282 LNTVINGFCKMGRIEEALKVLNDMV 306 (512)
Q Consensus 282 ~~~l~~~~~~~~~~~~a~~~~~~~~ 306 (512)
...++.-|...|+.++|.+.++++.
T Consensus 14 ~~~ll~Ey~~~~d~~Ea~~ci~el~ 38 (339)
T 1ug3_A 14 SKAIIEEYLHLNDMKEAVQCVQELA 38 (339)
T ss_dssp HHHHHHHHHHHCCHHHHHHHHHTTC
T ss_pred HHHHHHHHHhCCCHHHHHHHHHHcC
Confidence 4567777888888888888887775
Done!