BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010384
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3R3J|A Chain A, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|B Chain B, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|C Chain C, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|D Chain D, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|E Chain E, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
pdb|3R3J|F Chain F, Kinetic And Structural Characterization Of Plasmodium
Falciparum Glutamate Dehydrogenase 2
Length = 456
Score = 353 bits (905), Expect = 2e-97, Method: Compositional matrix adjust.
Identities = 152/300 (50%), Positives = 227/300 (75%), Gaps = 1/300 (0%)
Query: 198 EAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGE 257
E + ++ +E EF+Q+ +E L L+ V K++ Y+ ++E + EPER+I FRVPW++D+GE
Sbjct: 21 EKVVSKNKNEPEFLQAFEEVLSCLKPVFKKDNVYIGVLENIAEPERVIQFRVPWINDKGE 80
Query: 258 THVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDF 317
+NRGFRVQ++ LGP +GGLRFHP++NLS+ KFLGFEQ KN+L+ +GG GGSDF
Sbjct: 81 HKMNRGFRVQYNSVLGPYKGGLRFHPAVNLSVIKFLGFEQIFKNSLTTLPMGGGKGGSDF 140
Query: 318 DPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGS 377
DPKGKS+NEI++FCQSFM + RY+GP+ D+P+ ++GVG RE+GYLFGQY++L F+G
Sbjct: 141 DPKGKSENEILKFCQSFMTNLFRYIGPNTDVPAGDIGVGGREIGYLFGQYKKLKNSFEGV 200
Query: 378 FTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA 437
TG I W GS++R EATGYG+V+FA+ +L D+N L+ +C+VSGSG +A +++EKLI
Sbjct: 201 LTGKNIKWGGSNIRAEATGYGVVYFAENVLKDLNDNLENKKCLVSGSGNVAQYLVEKLIE 260
Query: 438 YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR-SLRDYSKTYARSKYYDEAKPWN 496
GAI +++SD+ GY+++ +GF +++++ DIK+ QR L++Y K +KY++ KPWN
Sbjct: 261 KGAIVLTMSDSNGYILEPNGFTKEQLNYIMDIKNNQRLRLKEYLKYSKTAKYFENQKPWN 320
>pdb|2BMA|A Chain A, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|B Chain B, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|C Chain C, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|D Chain D, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|E Chain E, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
pdb|2BMA|F Chain F, The Crystal Structure Of Plasmodium Falciparum Glutamate
Dehydrogenase, A Putative Target For Novel Antimalarial
Drugs
Length = 470
Score = 313 bits (801), Expect = 2e-85, Method: Compositional matrix adjust.
Identities = 146/321 (45%), Positives = 224/321 (69%), Gaps = 3/321 (0%)
Query: 186 KALMSKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMI 245
++L+ + ++ E +K DP+++EF+Q+ E L++L+ + + Y+ I+E L EPER I
Sbjct: 22 ESLVDQEMNNVYERVMKLDPNQVEFLQAFHEILYSLKPLFMEEPKYLPIIETLSEPERAI 81
Query: 246 VFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSP 305
FRV W+DD G NR FRVQ++ ALGP +GGLRFHPS+NLSI KFLGFEQ KN+L+
Sbjct: 82 QFRVCWLDDNGVQRKNRCFRVQYNSALGPYKGGLRFHPSVNLSIVKFLGFEQIFKNSLTG 141
Query: 306 YKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFG 365
+GG GGSDFDPKGKSDNEI++FCQ+FMNE++R++GP D+P+ ++GVG RE+GYL+G
Sbjct: 142 LSMGGGKGGSDFDPKGKSDNEILKFCQAFMNELYRHIGPCTDVPAGDIGVGGREIGYLYG 201
Query: 366 QYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG 425
QY+++ F G+ TG + W GS+LR EATGYGLV+F +L +N ++ VVSGSG
Sbjct: 202 QYKKIVNSFNGTLTGKNVKWGGSNLRVEATGYGLVYFVLEVLKSLNIPVEKQTAVVSGSG 261
Query: 426 KIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYA 484
+A++ ++KL+ +++SD+ GY+ + +GF + + FL D+K +++ +++Y +
Sbjct: 262 NVALYCVQKLLHLNVKVLTLSDSNGYVYEPNGFTHENLEFLIDLKEEKKGRIKEYLNHSS 321
Query: 485 RSKYYDEAKPWNE--RLSYTC 503
+KY+ KPW L++ C
Sbjct: 322 TAKYFPNEKPWGVPCTLAFPC 342
>pdb|2YFH|A Chain A, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|B Chain B, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|C Chain C, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|D Chain D, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|E Chain E, Structure Of A Chimeric Glutamate Dehydrogenase
pdb|2YFH|F Chain F, Structure Of A Chimeric Glutamate Dehydrogenase
Length = 448
Score = 304 bits (779), Expect = 6e-83, Method: Compositional matrix adjust.
Identities = 149/312 (47%), Positives = 214/312 (68%), Gaps = 5/312 (1%)
Query: 189 MSKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHY--VNIMERLLEPERMIV 246
MSK ++ K+ E EF+Q+V+E L +L V+ + Y V ++ER++ PER+I
Sbjct: 1 MSKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIE 60
Query: 247 FRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPY 306
FRVPW DD G+ HVN G+RVQF+ A+GP +GGLRF PS+NLSI KFLGFEQ K++L+
Sbjct: 61 FRVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTL 120
Query: 307 KLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQ 366
+GGA GGSDFDP GKSD E+MRFCQ+FM E++R++GPD D+P+ ++GVG RE+GY++GQ
Sbjct: 121 PMGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQ 180
Query: 367 YRRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSG 425
YR++ G F G TG + GS +R EATGYGLV+F + +L +G+R VSGSG
Sbjct: 181 YRKIVGGFYNGVLTGKARSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSG 240
Query: 426 KIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYA 484
+A + +EK + +GA ++ SD+ G +VDE GF K++ L +IK S+ + DY+K +
Sbjct: 241 NVAQYAIEKAMEFGARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFG 300
Query: 485 RSKYYDEAKPWN 496
Y + +PW+
Sbjct: 301 LV-YLEGQQPWS 311
>pdb|4FCC|A Chain A, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|B Chain B, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|C Chain C, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|D Chain D, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|E Chain E, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|F Chain F, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|G Chain G, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|H Chain H, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|I Chain I, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|J Chain J, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|K Chain K, Glutamate Dehydrogenase From E. Coli
pdb|4FCC|L Chain L, Glutamate Dehydrogenase From E. Coli
pdb|4FHN|X Chain X, Nup37-Nup120 Full-Length Complex From Schizosaccharomyces
Pombe
Length = 450
Score = 301 bits (772), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 209/298 (70%), Gaps = 4/298 (1%)
Query: 202 KRDPHEIEFIQSVQESLHALERVIAKNSHY--VNIMERLLEPERMIVFRVPWVDDRGETH 259
KRDP++ EF Q+V+E + L + +N Y ++++ERL+EPER+I FRV WVDDR +
Sbjct: 19 KRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQVQ 78
Query: 260 VNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDP 319
VNR +RVQFS A+GP +GG+RFHPS+NLSI KFLGFEQT KNAL+ +GG GGSDFDP
Sbjct: 79 VNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDP 138
Query: 320 KGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFT 379
KGKS+ E+MRFCQ+ M E++R+LG D D+P+ ++GVG RE+G++ G ++L+ + FT
Sbjct: 139 KGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFT 198
Query: 380 GPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYG 439
G + + GS +R EATGYGLV+F + +L +G+R VSGSG +A + +EK + +G
Sbjct: 199 GKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFG 258
Query: 440 AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWN 496
A ++ SD+ G +VDE GF K++ L +IKS + + DY+K + Y + +PW+
Sbjct: 259 ARVITASDSSGTVVDESGFTKEKLARLIEIKSSRDGRVADYAKEFGLV-YLEGQQPWS 315
>pdb|3SBO|A Chain A, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|B Chain B, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|C Chain C, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|D Chain D, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|E Chain E, Structure Of E.Coli Gdh From Native Source
pdb|3SBO|F Chain F, Structure Of E.Coli Gdh From Native Source
pdb|2YFG|A Chain A, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|B Chain B, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|C Chain C, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|D Chain D, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
pdb|2YFG|F Chain F, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 301 bits (771), Expect = 6e-82, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 209/298 (70%), Gaps = 4/298 (1%)
Query: 202 KRDPHEIEFIQSVQESLHALERVIAKNSHY--VNIMERLLEPERMIVFRVPWVDDRGETH 259
KRDP++ EF Q+V+E + L + +N Y ++++ERL+EPER+I FRV WVDDR +
Sbjct: 16 KRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQ 75
Query: 260 VNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDP 319
VNR +RVQFS A+GP +GG+RFHPS+NLSI KFLGFEQT KNAL+ +GG GGSDFDP
Sbjct: 76 VNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDP 135
Query: 320 KGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFT 379
KGKS+ E+MRFCQ+ M E++R+LG D D+P+ ++GVG RE+G++ G ++L+ + FT
Sbjct: 136 KGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFT 195
Query: 380 GPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYG 439
G + + GS +R EATGYGLV+F + +L +G+R VSGSG +A + +EK + +G
Sbjct: 196 GKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFG 255
Query: 440 AIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWN 496
A ++ SD+ G +VDE GF K++ L +IK S+ + DY+K + Y + +PW+
Sbjct: 256 ARVITASDSSGTVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLV-YLEGQQPWS 312
>pdb|2YFG|E Chain E, Structural Determinants Of Cofactor Specificity And Domain
Flexibility In Bacterial Glutamate Dehydrogenases
Length = 447
Score = 301 bits (770), Expect = 8e-82, Method: Compositional matrix adjust.
Identities = 144/298 (48%), Positives = 209/298 (70%), Gaps = 4/298 (1%)
Query: 202 KRDPHEIEFIQSVQESLHALERVIAKNSHY--VNIMERLLEPERMIVFRVPWVDDRGETH 259
KRDP++ EF Q+V+E + L + +N Y ++++ERL+EPER+I FRV WVDDR +
Sbjct: 16 KRDPNQTEFAQAVREVMTTLWPFLEQNPKYRQMSLLERLVEPERVIQFRVVWVDDRNQIQ 75
Query: 260 VNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDP 319
VNR +RVQFS A+GP +GG+RFHPS+NLSI KFLGFEQT KNAL+ +GG GGSDFDP
Sbjct: 76 VNRAWRVQFSSAIGPYKGGMRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFDP 135
Query: 320 KGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFT 379
KGKS+ E+MRFCQ+ M E++R+LG D D+P+ ++GVG RE+G++ G ++L+ + FT
Sbjct: 136 KGKSEGEVMRFCQALMTELYRHLGADTDVPAGDIGVGGREVGFMAGMMKKLSNNTACVFT 195
Query: 380 GPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYG 439
G + + GS +R EATGYGLV+F + +L +G+R VSGSG +A + +EK + +G
Sbjct: 196 GKGLSFGGSLIRPEATGYGLVYFTEAMLKRHGMGFEGMRVSVSGSGNVAQYAIEKAMEFG 255
Query: 440 AIPVSVSDAKGYLVDEDGFDYMKISFLRDIK-SQQRSLRDYSKTYARSKYYDEAKPWN 496
A ++ SD+ G +VDE GF K++ L +IK S+ + DY+K + Y + +PW+
Sbjct: 256 ARVITASDSSGLVVDESGFTKEKLARLIEIKASRDGRVADYAKEFGLV-YLEGQQPWS 312
>pdb|1HRD|A Chain A, Glutamate Dehydrogenase
pdb|1HRD|B Chain B, Glutamate Dehydrogenase
pdb|1HRD|C Chain C, Glutamate Dehydrogenase
pdb|1BGV|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 283 bits (723), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 210/315 (66%), Gaps = 6/315 (1%)
Query: 190 SKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHY--VNIMERLLEPERMIVF 247
SK ++ K+ E EF+Q+V+E L +L V+ + Y V ++ER++ PER+I F
Sbjct: 1 SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEF 60
Query: 248 RVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYK 307
RVPW DD G+ HVN G+RVQF+ A+GP +GGLRF PS+NLSI KFLGFEQ K++L+
Sbjct: 61 RVPWEDDNGKVHVNTGYRVQFNGAIGPYKGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 120
Query: 308 LGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQY 367
+GGA GGSDFDP GKSD E+MRFCQ+FM E++R++GPD D+P+ ++GVG RE+GY++GQY
Sbjct: 121 MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQY 180
Query: 368 RRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK 426
R++ G F G TG + GS +R EATGYG V++ + ++ N L G ++G G
Sbjct: 181 RKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 240
Query: 427 IAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDY-MKISFLRDIKSQQRS-LRDYSKTYA 484
+A +KL GA V++S GY+ D +G KI+++ ++++ R+ ++DY+ +
Sbjct: 241 VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFG 300
Query: 485 RSKYYDEAKPWNERL 499
+++ KPW +++
Sbjct: 301 -VQFFPGEKPWGQKV 314
>pdb|1K89|A Chain A, K89l Mutant Of Glutamate Dehydrogenase
Length = 449
Score = 281 bits (720), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 209/315 (66%), Gaps = 6/315 (1%)
Query: 190 SKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHY--VNIMERLLEPERMIVF 247
SK ++ K+ E EF+Q+V+E L +L V+ + Y V ++ER++ PER+I F
Sbjct: 1 SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEF 60
Query: 248 RVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYK 307
RVPW DD G+ HVN G+RVQF+ A+GP GGLRF PS+NLSI KFLGFEQ K++L+
Sbjct: 61 RVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 120
Query: 308 LGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQY 367
+GGA GGSDFDP GKSD E+MRFCQ+FM E++R++GPD D+P+ ++GVG RE+GY++GQY
Sbjct: 121 MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGARELGYMYGQY 180
Query: 368 RRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK 426
R++ G F G TG + GS +R EATGYG V++ + ++ N L G ++G G
Sbjct: 181 RKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 240
Query: 427 IAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDY-MKISFLRDIKSQQRS-LRDYSKTYA 484
+A +KL GA V++S GY+ D +G KI+++ ++++ R+ ++DY+ +
Sbjct: 241 VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFG 300
Query: 485 RSKYYDEAKPWNERL 499
+++ KPW +++
Sbjct: 301 -VQFFPGEKPWGQKV 314
>pdb|1AUP|A Chain A, Glutamate Dehydrogenase
Length = 449
Score = 281 bits (719), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 138/315 (43%), Positives = 209/315 (66%), Gaps = 6/315 (1%)
Query: 190 SKTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHY--VNIMERLLEPERMIVF 247
SK ++ K+ E EF+Q+V+E L +L V+ + Y V ++ER++ PER+I F
Sbjct: 1 SKYVDRVIAEVEKKYADEPEFVQTVEEVLSSLGPVVDAHPEYEEVALLERMVIPERVIEF 60
Query: 248 RVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYK 307
RVPW DD G+ HVN G+RVQF+ A+GP GGLRF PS+NLSI KFLGFEQ K++L+
Sbjct: 61 RVPWEDDNGKVHVNTGYRVQFNGAIGPYLGGLRFAPSVNLSIMKFLGFEQAFKDSLTTLP 120
Query: 308 LGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQY 367
+GGA GGSDFDP GKSD E+MRFCQ+FM E++R++GPD D+P+ ++GVG RE+GY++GQY
Sbjct: 121 MGGAKGGSDFDPNGKSDREVMRFCQAFMTELYRHIGPDIDVPAGDLGVGAREIGYMYGQY 180
Query: 368 RRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK 426
R++ G F G TG + GS +R EATGYG V++ + ++ N L G ++G G
Sbjct: 181 RKIVGGFYNGVLTGKARSFGGSLVRPEATGYGSVYYVEAVMKHENDTLVGKTVALAGFGN 240
Query: 427 IAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDY-MKISFLRDIKSQQRS-LRDYSKTYA 484
+A +KL GA V++S GY+ D +G KI+++ ++++ R+ ++DY+ +
Sbjct: 241 VAWGAAKKLAELGAKAVTLSGPDGYIYDPEGITTEEKINYMLEMRASGRNKVQDYADKFG 300
Query: 485 RSKYYDEAKPWNERL 499
+++ KPW +++
Sbjct: 301 -VQFFPGEKPWGQKV 314
>pdb|3K92|A Chain A, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|B Chain B, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|C Chain C, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|D Chain D, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|E Chain E, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
pdb|3K92|F Chain F, Crystal Structure Of A E93k Mutant Of The Majour Bacillus
Su Glutamate Dehydrogenase Rocg
Length = 424
Score = 123 bits (308), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 74/238 (31%), Positives = 119/238 (50%), Gaps = 6/238 (2%)
Query: 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKF 292
++ E + EP+RM+ R+P D G V G+R Q + A+GP +GG+RFHP +N K
Sbjct: 37 DMYELMKEPQRMLTVRIPVKMDNGSVKVFTGYRSQHNDAVGPTKGGVRFHPEVNEEKVKA 96
Query: 293 LGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEE 352
L TLK ++ GG GG DP+ S E+ R + ++ I + +GP KD+P+ +
Sbjct: 97 LSIWMTLKCGIANLPYGGGKGGIICDPRTMSFGELERLSRGYVRAISQIVGPTKDIPAPD 156
Query: 353 MGVGTREMGYLFGQYRRLAGHFQ--GSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADM 410
+ ++ M ++ +Y RL F G TG + GS R AT G+ + +
Sbjct: 157 VYTNSQIMAWMMDEYSRLR-EFDSPGFITGKPLVLGGSQGRETATAQGVTICIEEAVKKK 215
Query: 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRD 468
+L+ R ++ G G + + + GA + +SDA G L + DG D I +L D
Sbjct: 216 GIKLQNARIIIQGFGNAGSFLAKFMHDAGAKVIGISDANGGLYNPDGLD---IPYLLD 270
>pdb|1B3B|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
pdb|1B3B|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant N97d,
G376k
Length = 415
Score = 122 bits (306), Expect = 5e-28, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKF 292
++ E L P+R+++ P D G V G+RVQ + A GP +GG+R+HP + L K
Sbjct: 25 DLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKA 84
Query: 293 LGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEE 352
L F T K A+ GG GG DPK S NE+ R + F +EI +GP D+P+ +
Sbjct: 85 LAFWMTWKTAVMDLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQVIIGPYNDIPAPD 144
Query: 353 MGVGTREMGYLFGQYRRLAGH-FQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMN 411
+ + + Y GH G TG + GS R EATG G+ A L + +
Sbjct: 145 VNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLG 204
Query: 412 KELKGLRCVVSGSGKI----AMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459
+ K V G G + A+ + ++L G+ V+VSD++G + + +GFD
Sbjct: 205 IDPKKATVAVQGFGNVGQFAALLISQEL---GSKVVAVSDSRGGIYNPEGFD 253
>pdb|1B26|A Chain A, Glutamate Dehydrogenase
pdb|1B26|B Chain B, Glutamate Dehydrogenase
pdb|1B26|C Chain C, Glutamate Dehydrogenase
pdb|1B26|D Chain D, Glutamate Dehydrogenase
pdb|1B26|E Chain E, Glutamate Dehydrogenase
pdb|1B26|F Chain F, Glutamate Dehydrogenase
Length = 416
Score = 122 bits (305), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 76/232 (32%), Positives = 116/232 (50%), Gaps = 8/232 (3%)
Query: 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKF 292
++ E L P+R+++ P D G V G+RVQ + A GP +GG+R+HP + L K
Sbjct: 26 DLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKA 85
Query: 293 LGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEE 352
L F T K A+ GG GG DPK S NE+ R + F +EI +GP D+P+ +
Sbjct: 86 LAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRNELERLSRRFFSEIQVIIGPYNDIPAPD 145
Query: 353 MGVGTREMGYLFGQYRRLAGH-FQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMN 411
+ + + Y GH G TG + GS R EATG G+ A L + +
Sbjct: 146 VNTNADVIAWYMDTYSMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLG 205
Query: 412 KELKGLRCVVSGSGKI----AMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459
+ K V G G + A+ + ++L G+ V+VSD++G + + +GFD
Sbjct: 206 IDPKKATVAVQGFGNVGQFAALLISQEL---GSKVVAVSDSRGGIYNPEGFD 254
>pdb|1EUZ|A Chain A, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|B Chain B, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|C Chain C, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|D Chain D, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|E Chain E, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
pdb|1EUZ|F Chain F, Glutamate Dehydrogenase From Thermococcus Profundus In The
Unligated State
Length = 419
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 82/258 (31%), Positives = 125/258 (48%), Gaps = 14/258 (5%)
Query: 211 IQSVQESLHALERVIAKNSHYVNIMERLLE----PERMIVFRVPWVDDRGETHVNRGFRV 266
I + ++ LER + Y++I E LE P R++ VP D G V GFRV
Sbjct: 4 IDPFEMAVKQLERA----AQYMDISEEALEWLKKPMRIVEVSVPIEMDDGSVKVFTGFRV 59
Query: 267 QFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNE 326
Q + A GP +GG+R+HP+ LS K L T K A+ GG GG +PK S+ E
Sbjct: 60 QHNWARGPTKGGIRWHPAETLSTVKALATWMTWKVAVVDLPYGGGKGGIIVNPKELSERE 119
Query: 327 IMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYR---RLAGHFQGSFTGPRI 383
R ++++ ++ +GP D+P+ ++ + MG++ +Y R G G TG +
Sbjct: 120 QERLARAYIRAVYDVIGPWTDIPAPDVYTNPKIMGWMMDEYETIMRRKGPAFGVITGKPL 179
Query: 384 FWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA--YGAI 441
GS R AT G +F + + +LKG + V G G A + KL G
Sbjct: 180 SIGGSLGRGTATAQGAIFTIREAAKALGIDLKGKKIAVQGYGN-AGYYTAKLAKEQLGMT 238
Query: 442 PVSVSDAKGYLVDEDGFD 459
V+VSD++G + + DG D
Sbjct: 239 VVAVSDSRGGIYNPDGLD 256
>pdb|3AOE|E Chain E, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|F Chain F, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|C Chain C, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|D Chain D, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 419
Score = 117 bits (292), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 73/247 (29%), Positives = 114/247 (46%), Gaps = 1/247 (0%)
Query: 218 LHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRG 277
L LER + + +E L P+R++ +P V D G+ + +G+RV A GP +G
Sbjct: 19 LEWLERALKVAGVHPTTLEYLAHPKRLVTLSLPVVMDDGKVRIFQGYRVVHDIARGPAKG 78
Query: 278 GLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNE 337
G+R P + L L TLK A+ GGAAGG DPKG S E+ R + + E
Sbjct: 79 GVRLDPGVTLGQTAGLAAWMTLKAAVYDLPFGGAAGGIAVDPKGLSPQELERLVRRYTAE 138
Query: 338 IHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGH-FQGSFTGPRIFWSGSSLRTEATG 396
+ +GPD D+ ++G + M ++ Y G G TG GS R +A G
Sbjct: 139 LVGLIGPDSDILGPDLGADQQVMAWIMDTYSMTVGSTVPGVVTGKPHALGGSEGRDDAAG 198
Query: 397 YGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDED 456
G + + + +L+G R VV G G++ V G V+V+ + G + +
Sbjct: 199 LGALLVLEALAKRRGLDLRGARVVVQGLGQVGAAVALHAERLGMRVVAVATSMGGMYAPE 258
Query: 457 GFDYMKI 463
G D ++
Sbjct: 259 GLDVAEV 265
>pdb|3AOG|A Chain A, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|B Chain B, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|C Chain C, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|D Chain D, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|E Chain E, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|F Chain F, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|G Chain G, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|H Chain H, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|I Chain I, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|J Chain J, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|K Chain K, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
pdb|3AOG|L Chain L, Crystal Structure Of Glutamate Dehydrogenase (Gdhb) From
Thermus Thermophilus (Glu Bound Form)
Length = 440
Score = 116 bits (290), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 1/240 (0%)
Query: 221 LERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLR 280
++RV+ + E L P+R+++ VP D G G+RV + A GP +GG+R
Sbjct: 39 VDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVR 98
Query: 281 FHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHR 340
+HP + LS L T+KNA GG GG DP+ S E+ R + + +EI
Sbjct: 99 YHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGI 158
Query: 341 YLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGH-FQGSFTGPRIFWSGSSLRTEATGYGL 399
LGPD+D+P+ ++ G REM ++ Y G G TG I GS R +ATG G+
Sbjct: 159 LLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGV 218
Query: 400 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459
A + +++G R + G G + +GA V+V D G + +E G D
Sbjct: 219 FITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGID 278
>pdb|3AOE|A Chain A, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
pdb|3AOE|B Chain B, Crystal Structure Of Hetero-Hexameric Glutamate
Dehydrogenase From Thermus Thermophilus (Leu Bound Form)
Length = 424
Score = 116 bits (290), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 76/240 (31%), Positives = 115/240 (47%), Gaps = 1/240 (0%)
Query: 221 LERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLR 280
++RV+ + E L P+R+++ VP D G G+RV + A GP +GG+R
Sbjct: 23 VDRVVPYLGRLAPLAESLKRPKRVLIVDVPVRLDDGSVAYFEGYRVHHNTARGPAKGGVR 82
Query: 281 FHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHR 340
+HP + LS L T+KNA GG GG DP+ S E+ R + + +EI
Sbjct: 83 YHPEVTLSEVMALAGWMTIKNAAVGLPYGGGKGGIRVDPRKLSPGELERLTRRYTSEIGI 142
Query: 341 YLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGH-FQGSFTGPRIFWSGSSLRTEATGYGL 399
LGPD+D+P+ ++ G REM ++ Y G G TG I GS R +ATG G+
Sbjct: 143 LLGPDRDIPAPDVNTGEREMAWMMDTYSMNVGRTVPGVVTGKPIALGGSLGRRDATGRGV 202
Query: 400 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459
A + +++G R + G G + +GA V+V D G + +E G D
Sbjct: 203 FITAAAAAEKIGLQVEGARVAIQGFGNVGNAAARAFHDHGARVVAVQDHTGTVYNEAGID 262
>pdb|1BVU|A Chain A, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|B Chain B, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|C Chain C, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|D Chain D, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|E Chain E, Glutamate Dehydrogenase From Thermococcus Litoralis
pdb|1BVU|F Chain F, Glutamate Dehydrogenase From Thermococcus Litoralis
Length = 418
Score = 115 bits (289), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 80/268 (29%), Positives = 129/268 (48%), Gaps = 22/268 (8%)
Query: 201 LKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLE----PERMIVFRVPWVDDRG 256
+++DP EI ++ LER + Y++I E LE P+R++ +P D G
Sbjct: 1 VEQDPFEI--------AVKQLERA----AQYMDISEEALEFLKRPQRIVEVSIPVEMDDG 48
Query: 257 ETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSD 316
V GFRVQ++ A GP +GG+R+HP LS K L T K A+ GG GG
Sbjct: 49 SVKVFTGFRVQYNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGVI 108
Query: 317 FDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQG 376
+PK SD E R + ++ I+ + P D+P+ ++ + M ++ +Y ++
Sbjct: 109 CNPKEMSDREKERLARGYVRAIYDVISPYTDIPAPDVYTNPQIMAWMMDEYETISRRKDP 168
Query: 377 SF---TGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLE 433
SF TG G R +AT G + + + +LKG + G G A + +
Sbjct: 169 SFGVITGKPPSVGGIVARMDATARGASYTVREAAKALGMDLKGKTIAIQGYGN-AGYYMA 227
Query: 434 KLIA--YGAIPVSVSDAKGYLVDEDGFD 459
K+++ YG V+VSD KG + + DG +
Sbjct: 228 KIMSEEYGMKVVAVSDTKGGIYNPDGLN 255
>pdb|3K8Z|A Chain A, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|B Chain B, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|C Chain C, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|D Chain D, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|E Chain E, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
pdb|3K8Z|F Chain F, Crystal Structure Of Gudb1 A Decryptified Secondary
Glutamate Dehydrogenase From B. Subtilis
Length = 423
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 76/264 (28%), Positives = 131/264 (49%), Gaps = 10/264 (3%)
Query: 207 EIEFIQSVQESLH-ALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFR 265
+++ ++S Q +H ALE++ + + E L EP R++ ++P D G + G+R
Sbjct: 14 KLDVLKSTQTVIHKALEKL----GYPEEVYELLKEPMRLLTVKIPVRMDDGSVKIFTGYR 69
Query: 266 VQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDN 325
+ ++GP +GG+RFHP++ K L +LK + GG GG DP+ S
Sbjct: 70 AH-NDSVGPTKGGIRFHPNVTEKEVKALSIWMSLKCGIIDLPYGGGKGGIVCDPRDMSFR 128
Query: 326 EIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRL-AGHFQGSFTGPRIF 384
E+ R + ++ I + +GP KD+P+ ++ ++ M ++ +Y R+ + G TG +
Sbjct: 129 ELERLSRGYVRAISQIVGPTKDVPAPDVFTNSQIMAWMMDEYSRIDEFNSPGFITGKPLV 188
Query: 385 WSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVS 444
GS R AT G+ + ++KG R VV G G ++ + + GA V
Sbjct: 189 LGGSHGRESATAKGVTICIKEAAKKRGIDIKGARVVVQGFGNAGSYLAKFMHDAGAKVVG 248
Query: 445 VSDAKGYLVDEDGFDYMKISFLRD 468
+SDA G L D +G D I +L D
Sbjct: 249 ISDAYGGLYDPEGLD---IDYLLD 269
>pdb|1GTM|A Chain A, Structure Of Glutamate Dehydrogenase
pdb|1GTM|B Chain B, Structure Of Glutamate Dehydrogenase
pdb|1GTM|C Chain C, Structure Of Glutamate Dehydrogenase
Length = 419
Score = 114 bits (284), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 91/293 (31%), Positives = 142/293 (48%), Gaps = 34/293 (11%)
Query: 201 LKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLE----PERMIVFRVPWVDDRG 256
++ DP+EI Q LER + Y+ I E LE P+R++ +P D G
Sbjct: 1 VEADPYEIVIKQ--------LERA----AQYMEISEEALEFLKRPQRIVEVTIPVEMDDG 48
Query: 257 ETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSD 316
V GFRVQ + A GP +GG+R+HP LS K L T K A+ GG GG
Sbjct: 49 SVKVFTGFRVQHNWARGPTKGGIRWHPEETLSTVKALAAWMTWKTAVMDLPYGGGKGGII 108
Query: 317 FDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQY----RRLAG 372
DPK SD E R + ++ I+ + P +D+P+ ++ + M ++ +Y RR
Sbjct: 109 VDPKKLSDREKERLARGYIRAIYDVISPYEDIPAPDVYTNPQIMAWMMDEYETISRRKTP 168
Query: 373 HFQGSFTGPRIFWSGSSLRTEATGYGLVFF----AQLILADMNKELKGLRCVVSGSGKIA 428
F G TG + GS R EAT G + A+++ D LKG + G G A
Sbjct: 169 AF-GIITGKPLSIGGSLGRIEATARGASYTIREAAKVLGWDT---LKGKTIAIQGYGN-A 223
Query: 429 MHVLEKLIA--YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDY 479
+ L K+++ +G V+VSD+KG + + DG + ++ K++ S++D+
Sbjct: 224 GYYLAKIMSEDFGMKVVAVSDSKGGIYNPDGLNADEV---LKWKNEHGSVKDF 273
>pdb|2TMG|A Chain A, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|B Chain B, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|C Chain C, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|D Chain D, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|E Chain E, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
pdb|2TMG|F Chain F, Thermotoga Maritima Glutamate Dehydrogenase Mutant S128r,
T158e, N117r, S160e
Length = 415
Score = 112 bits (280), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 75/232 (32%), Positives = 115/232 (49%), Gaps = 8/232 (3%)
Query: 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKF 292
++ E L P+R+++ P D G V G+RVQ + A GP +GG+R+HP + L K
Sbjct: 25 DLAEVLRRPKRVLIVEFPVRMDDGHVEVFTGYRVQHNVARGPAKGGIRYHPDVTLDEVKA 84
Query: 293 LGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEE 352
L F T K A+ GG GG DPK S E+ R + F EI +GP D+P+ +
Sbjct: 85 LAFWMTWKTAVMNLPFGGGKGGVRVDPKKLSRRELERLSRRFFREIQVIIGPYNDIPAPD 144
Query: 353 MGVGTREMGYLFGQYRRLAGH-FQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMN 411
+ + + +Y GH G TG + GS R EATG G+ A L + +
Sbjct: 145 VNTNADVIAWYMDEYEMNVGHTVLGIVTGKPVELGGSKGREEATGRGVKVCAGLAMDVLG 204
Query: 412 KELKGLRCVVSGSGKI----AMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459
+ K V G G + A+ + ++L G+ V+VSD++G + + +GFD
Sbjct: 205 IDPKKATVAVQGFGNVGQFAALLISQEL---GSKVVAVSDSRGGIYNPEGFD 253
>pdb|1V9L|A Chain A, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|B Chain B, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|C Chain C, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|D Chain D, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|E Chain E, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
pdb|1V9L|F Chain F, L-Glutamate Dehydrogenase From Pyrobaculum Islandicum
Complexed With Nad
Length = 421
Score = 107 bits (267), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 66/224 (29%), Positives = 108/224 (48%), Gaps = 3/224 (1%)
Query: 238 LLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQ 297
L P R+++ +P D G V G+RVQ LGP +GG+RFHP + L+ L
Sbjct: 31 LSRPRRVLIVNIPVRLDGGGFEVFEGYRVQHCDVLGPYKGGVRFHPEVTLADDVALAILM 90
Query: 298 TLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGT 357
TLKN+L+ GGA G DPK S E+ + + I +G D+P+ ++G
Sbjct: 91 TLKNSLAGLPYGGAKGAVRVDPKKLSQRELEELSRGYARAIAPLIGDVVDIPAPDVGTNA 150
Query: 358 REMGYLFGQYRRLAGH-FQGSFTG-PRIFWSGSSLRTEATGYGLVFFAQLILADMNKELK 415
+ M ++ +Y ++ G+ G FT P W G+ +R ATG+G+ + + + ++
Sbjct: 151 QIMAWMVDEYSKIKGYNVPGVFTSKPPELW-GNPVREYATGFGVAVATREMAKKLWGGIE 209
Query: 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFD 459
G + G G + L GA ++VSD G ++G +
Sbjct: 210 GKTVAIQGMGNVGRWTAYWLEKMGAKVIAVSDINGVAYRKEGLN 253
>pdb|1L1F|A Chain A, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|B Chain B, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|C Chain C, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|D Chain D, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|E Chain E, Structure Of Human Glutamate Dehydrogenase-Apo Form
pdb|1L1F|F Chain F, Structure Of Human Glutamate Dehydrogenase-Apo Form
Length = 505
Score = 107 bits (266), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 130/303 (42%), Gaps = 30/303 (9%)
Query: 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWV 252
SIVE L D E + + + + R+I +H +++ P
Sbjct: 24 GASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSL-------------SFPIR 70
Query: 253 DDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAA 312
D G V G+R Q SQ PC+GG+R+ +++ K L T K A+ GGA
Sbjct: 71 RDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAK 130
Query: 313 GGSDFDPKGKSDNEIMRFCQSFMNEIHR--YLGPDKDLPSEEMGVGTREMGYLFGQYRRL 370
G +PK +DNE+ + + F E+ + ++GP D+P+ +M G REM ++ Y
Sbjct: 131 AGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYAST 190
Query: 371 AGHF----QGSFTGPRIFWSGSSLRTEATGYGLVFFAQ--------LILADMNKELKGLR 418
GH+ TG I G R ATG G+ + + + M
Sbjct: 191 IGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKT 250
Query: 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD 478
VV G G + +H + L +GA ++V ++ G + + DG D + L D K Q S+
Sbjct: 251 FVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE---LEDFKLQHGSILG 307
Query: 479 YSK 481
+ K
Sbjct: 308 FPK 310
>pdb|3MW9|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MW9|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadh, Gtp,
Glu
pdb|3MVO|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVO|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Eu3+
pdb|3MVQ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3MVQ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Zinc
pdb|3QMU|A Chain A, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|B Chain B, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|C Chain C, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|D Chain D, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|E Chain E, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|F Chain F, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|G Chain G, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|H Chain H, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|I Chain I, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|J Chain J, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|K Chain K, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
pdb|3QMU|L Chain L, Bovine Glutamate Dehydrogenase Complexed With
Epicatechin-3-Gallate (Ecg)
Length = 501
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 131/303 (43%), Gaps = 30/303 (9%)
Query: 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWV 252
SIVE L D E + + + ++ R+I +H +++ P
Sbjct: 20 GASIVEDKLVEDLKTRETEEQKRNRVRSILRIIKPCNHVLSL-------------SFPIR 66
Query: 253 DDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAA 312
D G V G+R Q SQ PC+GG+R+ +++ K L T K A+ GGA
Sbjct: 67 RDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAK 126
Query: 313 GGSDFDPKGKSDNEIMRFCQSFMNEIHR--YLGPDKDLPSEEMGVGTREMGYLFGQYRRL 370
G +PK +DNE+ + + F E+ + ++GP D+P+ +M G REM ++ Y
Sbjct: 127 AGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYAST 186
Query: 371 AGHF----QGSFTGPRIFWSGSSLRTEATGYGLVFFAQ--------LILADMNKELKGLR 418
GH+ TG I G R ATG G+ + + + M
Sbjct: 187 IGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKT 246
Query: 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD 478
VV G G + +H + L +GA ++V ++ G + + DG D + L D K Q ++
Sbjct: 247 FVVQGFGNVGLHSMRYLHRFGAKCITVGESDGSIWNPDGIDPKE---LEDFKLQHGTILG 303
Query: 479 YSK 481
+ K
Sbjct: 304 FPK 306
>pdb|1NR1|A Chain A, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|B Chain B, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|C Chain C, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|D Chain D, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|E Chain E, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
pdb|1NR1|F Chain F, Crystal Structure Of The R463a Mutant Of Human Glutamate
Dehydrogenase
Length = 496
Score = 106 bits (264), Expect = 3e-23, Method: Compositional matrix adjust.
Identities = 81/303 (26%), Positives = 130/303 (42%), Gaps = 30/303 (9%)
Query: 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWV 252
SIVE L D E + + + + R+I +H +++ P
Sbjct: 15 GASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSL-------------SFPIR 61
Query: 253 DDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAA 312
D G V G+R Q SQ PC+GG+R+ +++ K L T K A+ GGA
Sbjct: 62 RDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAK 121
Query: 313 GGSDFDPKGKSDNEIMRFCQSFMNEIHR--YLGPDKDLPSEEMGVGTREMGYLFGQYRRL 370
G +PK +DNE+ + + F E+ + ++GP D+P+ +M G REM ++ Y
Sbjct: 122 AGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYAST 181
Query: 371 AGHF----QGSFTGPRIFWSGSSLRTEATGYGLVFFAQ--------LILADMNKELKGLR 418
GH+ TG I G R ATG G+ + + + M
Sbjct: 182 IGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKT 241
Query: 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD 478
VV G G + +H + L +GA ++V ++ G + + DG D + L D K Q S+
Sbjct: 242 FVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE---LEDFKLQHGSILG 298
Query: 479 YSK 481
+ K
Sbjct: 299 FPK 301
>pdb|3ETD|A Chain A, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|B Chain B, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|C Chain C, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|D Chain D, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|E Chain E, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETD|F Chain F, Structure Of Glutamate Dehydrogenase Complexed With
Bithionol
pdb|3ETE|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETE|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase
Complexed With Hexachlorophene
pdb|3ETG|A Chain A, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|B Chain B, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|C Chain C, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|D Chain D, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|E Chain E, Glutamate Dehydrogenase Complexed With Gw5074
pdb|3ETG|F Chain F, Glutamate Dehydrogenase Complexed With Gw5074
Length = 501
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 129/303 (42%), Gaps = 30/303 (9%)
Query: 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWV 252
SIVE L D E + + + + R+I +H +++ P
Sbjct: 20 GASIVEDKLVEDLKTRETEEQKRNRVRGILRIIKPCNHVLSL-------------SFPIR 66
Query: 253 DDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAA 312
D G V G+R Q SQ PC+GG+R+ +++ K L T K A+ GGA
Sbjct: 67 RDDGSWEVIEGYRAQHSQHRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAK 126
Query: 313 GGSDFDPKGKSDNEIMRFCQSFMNEIHR--YLGPDKDLPSEEMGVGTREMGYLFGQYRRL 370
G +PK +DNE+ + + F E+ + ++GP D+P+ +M G REM ++ Y
Sbjct: 127 AGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGVDVPAPDMSTGEREMSWIADTYAST 186
Query: 371 AGHF----QGSFTGPRIFWSGSSLRTEATGYGLVFFAQ--------LILADMNKELKGLR 418
GH+ TG I G R ATG G+ + + + M
Sbjct: 187 IGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKT 246
Query: 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD 478
V G G + +H + L +GA V+V ++ G + + DG D + L D K Q ++
Sbjct: 247 FAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPKE---LEDFKLQHGTILG 303
Query: 479 YSK 481
+ K
Sbjct: 304 FPK 306
>pdb|1NQT|A Chain A, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|B Chain B, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|C Chain C, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|D Chain D, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|E Chain E, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|F Chain F, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|G Chain G, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|H Chain H, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|I Chain I, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|J Chain J, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|K Chain K, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NQT|L Chain L, Crystal Structure Of Bovine Glutamate Dehydrogenase-adp
Complex
pdb|1NR7|A Chain A, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|B Chain B, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|C Chain C, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|D Chain D, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|E Chain E, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|F Chain F, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|G Chain G, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|H Chain H, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|I Chain I, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|J Chain J, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|K Chain K, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
pdb|1NR7|L Chain L, Crystal Structure Of Apo Bovine Glutamate Dehydrogenase
Length = 496
Score = 104 bits (260), Expect = 1e-22, Method: Compositional matrix adjust.
Identities = 80/303 (26%), Positives = 129/303 (42%), Gaps = 30/303 (9%)
Query: 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWV 252
SIVE L D E + + + + R+I +H +++ P
Sbjct: 15 GASIVEDKLVEDLRTRESEEQKRNRVRGILRIIKPCNHVLSL-------------SFPIR 61
Query: 253 DDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAA 312
D G V G+R Q S PC+GG+R+ +++ K L T K A+ GGA
Sbjct: 62 RDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALASLMTYKCAVVDVPFGGAK 121
Query: 313 GGSDFDPKGKSDNEIMRFCQSFMNEIHR--YLGPDKDLPSEEMGVGTREMGYLFGQYRRL 370
G +PK +DNE+ + + F E+ + ++GP D+P+ +M G REM ++ Y
Sbjct: 122 AGVKINPKNYTDNELEKITRRFTMELAKKGFIGPGIDVPAPDMSTGEREMSWIADTYAST 181
Query: 371 AGHF----QGSFTGPRIFWSGSSLRTEATGYGLVFFAQ--------LILADMNKELKGLR 418
GH+ TG I G R ATG G+ + + + M
Sbjct: 182 IGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFINEASYMSILGMTPGFGDKT 241
Query: 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRD 478
VV G G + +H + L +GA ++V ++ G + + DG D + L D K Q S+
Sbjct: 242 FVVQGFGNVGLHSMRYLHRFGAKCIAVGESDGSIWNPDGIDPKE---LEDFKLQHGSILG 298
Query: 479 YSK 481
+ K
Sbjct: 299 FPK 301
>pdb|2YFQ|A Chain A, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
pdb|2YFQ|B Chain B, Crystal Structure Of Glutamate Dehydrogenase From
Peptoniphilus Asaccharolyticus
Length = 421
Score = 99.0 bits (245), Expect = 6e-21, Method: Compositional matrix adjust.
Identities = 64/237 (27%), Positives = 116/237 (48%), Gaps = 7/237 (2%)
Query: 234 IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFL 293
+ E L EP+R+I +P D G V +G+R S A+GP +GG+RFHP++N+ K L
Sbjct: 28 VYELLKEPQRVIEISIPVKMDDGTVKVFKGWRSAHSSAVGPSKGGVRFHPNVNMDEVKAL 87
Query: 294 GFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEM 353
T K GG GG DP S+ E+ + + ++ +++YLG D+P+ ++
Sbjct: 88 SLWMTFKGGALGLPYGGGKGGICVDPAELSERELEQLSRGWVRGLYKYLGDRIDIPAPDV 147
Query: 354 GVGTREMGYLFGQYRRLAGHFQ--GSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMN 411
+ M + +Y +L G G+FTG + + GS R EATG+G+ +
Sbjct: 148 NTNGQIMSWFVDEYVKLNGERMDIGTFTGKPVAFGGSEGRNEATGFGVAVVVRESAKRFG 207
Query: 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS-----DAKGYLVDEDGFDYMKI 463
+++ + V G G + ++ + G +++ + L +E+G D+ ++
Sbjct: 208 IKMEDAKIAVQGFGNVGTFTVKNIERQGGKVCAIAEWDRNEGNYALYNENGIDFKEL 264
>pdb|1HWY|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWY|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nad And
2-Oxoglutarate
pdb|1HWZ|A Chain A, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|B Chain B, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|C Chain C, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|D Chain D, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|E Chain E, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
pdb|1HWZ|F Chain F, Bovine Glutamate Dehydrogenase Complexed With Nadph,
Glutamate, And Gtp
Length = 501
Score = 98.2 bits (243), Expect = 1e-20, Method: Compositional matrix adjust.
Identities = 69/260 (26%), Positives = 114/260 (43%), Gaps = 18/260 (6%)
Query: 237 RLLEP-ERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGF 295
R+++P ++ P D G V G+R Q S PC+GG+R+ +++ K L
Sbjct: 50 RIIKPCNHVLSLSFPIRRDDGSWEVIEGYRAQHSHQRTPCKGGIRYSTDVSVDEVKALAS 109
Query: 296 EQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHR--YLGPDKDLPSEEM 353
T K A+ GGA G +PK +D ++ + + F E+ + ++GP D+P+ M
Sbjct: 110 LMTYKCAVVDVPFGGAKAGVKINPKNYTDEDLEKITRRFTMELAKKGFIGPGVDVPAPNM 169
Query: 354 GVGTREMGYLFGQYRRLAGHF----QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILAD 409
G REM ++ Y GH+ TG I G R ATG G+ + + +
Sbjct: 170 STGEREMSWIADTYASTIGHYDINAHACVTGKPISQGGIHGRISATGRGVFHGIENFIEN 229
Query: 410 --------MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYM 461
M V G G + +H + L +GA V+V ++ G + + DG D
Sbjct: 230 ASYMSILGMTPGFGDKTFAVQGFGNVGLHSMRYLHRFGAKCVAVGESDGSIWNPDGIDPK 289
Query: 462 KISFLRDIKSQQRSLRDYSK 481
+ L D K Q ++ + K
Sbjct: 290 E---LEDFKLQHGTILGFPK 306
>pdb|2A9F|A Chain A, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
pdb|2A9F|B Chain B, Crystal Structure Of A Putative Malic Enzyme ((S)-
Malate:nad+ Oxidoreductase (Decarboxylating))
Length = 398
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 29/116 (25%), Positives = 47/116 (40%), Gaps = 15/116 (12%)
Query: 357 TREMGYLFGQYRRLAGHFQG----SFTGPRIFWSGSSLRTEAT---------GYGLVFFA 403
T++ + + LA F G + PR F L E G +V A
Sbjct: 114 TKDTEEIISIVKALAPTFGGINLEDISAPRCFEIEQRLIKECHIPVFHDDQHGTAIVVLA 173
Query: 404 QLI--LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDG 457
+ L + K L + VV+G G + + KL+A GA V+V D G + +++
Sbjct: 174 AIFNSLKLLKKSLDEVSIVVNGGGSAGLSITRKLLAAGATKVTVVDKFGIINEQEA 229
>pdb|1KCX|A Chain A, X-Ray Structure Of Nysgrc Target T-45
pdb|1KCX|B Chain B, X-Ray Structure Of Nysgrc Target T-45
Length = 518
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 25/100 (25%), Positives = 44/100 (44%), Gaps = 10/100 (10%)
Query: 142 GNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIIADK---PIYVKALMSKTAGSIVE 198
E R ++M ++L E L + + IA + P+Y+ +MSK+A I+
Sbjct: 199 AQEQKRILEMGITGPEGHALSRPEELEAEAVFRAIAIAGRINCPVYITKVMSKSAADIIA 258
Query: 199 AALKRDPHEIEFIQSVQESL-----HALERVIAKNSHYVN 233
A K+ P + F + + SL H + AK + +V
Sbjct: 259 LARKKGP--LVFGEPIAASLGTDGTHYWSKNWAKAAAFVT 296
>pdb|3VPX|A Chain A, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila.
pdb|3VPX|B Chain B, Crystal Structure Of Leucine Dehydrogenase From A
Psychrophilic Bacterium Sporosarcina Psychrophila
Length = 364
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 45/176 (25%), Positives = 72/176 (40%), Gaps = 21/176 (11%)
Query: 272 LGPCRGGLRF--HPSMNLSIAKFLGFEQ--TLKNALSPYKLGGAAGGSDFDPKGKSDNEI 327
LGP GG R + S +I L + T KNA + LGG +PK ++E+
Sbjct: 36 LGPALGGTRMWTYASEEEAIEDALRLARGMTYKNAAAGLNLGGGKTVIIGNPKTDKNDEM 95
Query: 328 MRFCQSFMNEIH-RYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWS 386
R ++ ++ RY + +E++G +M + + + G G+ + S
Sbjct: 96 FRAFGRYIEGLNGRY------ITAEDVGTTEADMDLINLETDYVTGTSAGAGS------S 143
Query: 387 GSSLRTEATG--YGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA 440
G+ A G YG+ A+ D L G V G G +A + E L GA
Sbjct: 144 GNPSPVTAYGIYYGMKAAAKEAFGD--DSLAGKTVAVQGVGNVAYALCEYLHEEGA 197
>pdb|1JO0|A Chain A, Structure Of Hi1333, A Hypothetical Protein From
Haemophilus Influenzae With Structural Similarity To
Rna-binding Proteins
pdb|1JO0|B Chain B, Structure Of Hi1333, A Hypothetical Protein From
Haemophilus Influenzae With Structural Similarity To
Rna-binding Proteins
Length = 98
Score = 29.6 bits (65), Expect = 4.4, Method: Composition-based stats.
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 2/66 (3%)
Query: 133 GRKHRRNPYGNEGSRNMQMSALEEHNNSLLHKEALRLQMASKDKIIADKPIYVKALMSKT 192
G H NP G + L E N+L H E +++++A D+ K + + A++ +T
Sbjct: 13 GLAHHLNPVVMLGGNGLTEGVLAEIENALNHHELIKVKVAGADR--ETKQLIINAIVRET 70
Query: 193 AGSIVE 198
+ V+
Sbjct: 71 KAAQVQ 76
>pdb|1HN0|A Chain A, Crystal Structure Of Chondroitin Abc Lyase I From Proteus
Vulgaris At 1.9 Angstroms Resolution
Length = 1021
Score = 29.3 bits (64), Expect = 4.8, Method: Compositional matrix adjust.
Identities = 15/47 (31%), Positives = 20/47 (42%)
Query: 287 LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQS 333
+ I +F TL +PY A FDPK +EI F Q+
Sbjct: 1 MPIFRFTALAMTLGLLSAPYNAMAATSNPAFDPKNLMQSEIYHFAQN 47
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.136 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,415,195
Number of Sequences: 62578
Number of extensions: 652910
Number of successful extensions: 1326
Number of sequences better than 100.0: 35
Number of HSP's better than 100.0 without gapping: 30
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1258
Number of HSP's gapped (non-prelim): 35
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 54 (25.4 bits)