Query 010384
Match_columns 512
No_of_seqs 305 out of 1585
Neff 4.5
Searched_HMMs 46136
Date Thu Mar 28 23:54:23 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010384.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010384hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 PTZ00079 NADP-specific glutama 100.0 5E-102 1E-106 817.4 38.2 319 191-509 12-333 (454)
2 PRK14030 glutamate dehydrogena 100.0 1.7E-98 4E-103 790.5 36.4 317 193-509 3-324 (445)
3 PRK14031 glutamate dehydrogena 100.0 1.1E-96 2E-101 777.1 36.7 316 193-509 3-323 (444)
4 COG0334 GdhA Glutamate dehydro 100.0 1.7E-92 3.7E-97 734.1 30.3 292 207-509 1-295 (411)
5 PRK09414 glutamate dehydrogena 100.0 1.9E-91 4.1E-96 738.2 36.2 314 192-509 6-324 (445)
6 PLN02477 glutamate dehydrogena 100.0 2.8E-89 6E-94 716.1 34.0 291 209-509 2-294 (410)
7 KOG2250 Glutamate/leucine/phen 100.0 3.6E-88 7.8E-93 707.7 29.4 333 157-509 1-346 (514)
8 PTZ00324 glutamate dehydrogena 100.0 6.2E-50 1.3E-54 449.8 26.4 259 233-509 464-780 (1002)
9 PF02812 ELFV_dehydrog_N: Glu/ 100.0 1.2E-47 2.5E-52 347.5 12.8 130 241-370 1-130 (131)
10 cd05313 NAD_bind_2_Glu_DH NAD( 100.0 2.1E-34 4.6E-39 286.2 14.0 131 379-509 1-134 (254)
11 PF00208 ELFV_dehydrog: Glutam 99.9 2E-27 4.3E-32 234.7 7.4 121 386-509 1-127 (244)
12 cd01076 NAD_bind_1_Glu_DH NAD( 99.9 1.7E-26 3.6E-31 225.8 13.5 117 386-509 1-119 (227)
13 cd05211 NAD_bind_Glu_Leu_Phe_V 99.9 9.1E-25 2E-29 212.5 11.8 108 394-509 1-110 (217)
14 cd01075 NAD_bind_Leu_Phe_Val_D 99.5 8.2E-14 1.8E-18 133.8 10.7 93 392-509 2-98 (200)
15 COG2902 NAD-specific glutamate 98.7 2.1E-07 4.6E-12 109.1 15.0 206 261-479 785-1026(1592)
16 PRK06392 homoserine dehydrogen 98.6 2.9E-08 6.2E-13 102.8 5.7 59 417-479 1-67 (326)
17 PRK08374 homoserine dehydrogen 98.6 2.5E-08 5.4E-13 103.3 5.2 61 417-480 3-73 (336)
18 PF05088 Bac_GDH: Bacterial NA 98.5 8.6E-07 1.9E-11 106.6 14.9 189 261-461 723-944 (1528)
19 cd05191 NAD_bind_amino_acid_DH 98.0 1.9E-05 4E-10 66.1 7.5 55 394-448 1-55 (86)
20 PRK06270 homoserine dehydrogen 97.8 4.8E-05 1E-09 79.0 6.8 60 417-479 3-72 (341)
21 PLN02700 homoserine dehydrogen 97.2 0.00051 1.1E-08 73.0 6.3 63 417-479 4-79 (377)
22 PF00670 AdoHcyase_NAD: S-aden 97.1 0.0013 2.7E-08 62.8 7.2 42 406-448 13-54 (162)
23 PRK06813 homoserine dehydrogen 96.5 0.0026 5.6E-08 66.9 4.5 47 417-463 3-59 (346)
24 smart00597 ZnF_TTF zinc finger 96.5 0.00073 1.6E-08 58.5 0.2 65 100-167 3-72 (90)
25 PF02826 2-Hacid_dh_C: D-isome 96.2 0.0077 1.7E-07 56.8 5.3 38 411-448 31-68 (178)
26 PRK08306 dipicolinate synthase 96.1 0.012 2.6E-07 60.3 6.7 54 392-449 131-184 (296)
27 cd01065 NAD_bind_Shikimate_DH 96.1 0.018 3.9E-07 51.7 7.1 48 401-448 4-51 (155)
28 PRK15438 erythronate-4-phospha 96.1 0.011 2.4E-07 63.0 6.6 54 394-448 94-147 (378)
29 PRK09436 thrA bifunctional asp 96.1 0.013 2.9E-07 67.9 7.6 61 403-463 452-521 (819)
30 PRK09466 metL bifunctional asp 96.0 0.017 3.6E-07 67.1 7.8 61 403-463 445-515 (810)
31 TIGR02853 spore_dpaA dipicolin 96.0 0.017 3.6E-07 59.1 7.0 54 392-449 130-183 (287)
32 PTZ00075 Adenosylhomocysteinas 96.0 0.016 3.4E-07 63.7 7.0 53 396-449 233-286 (476)
33 PRK00257 erythronate-4-phospha 95.9 0.017 3.6E-07 61.7 6.6 48 400-448 100-147 (381)
34 PRK05476 S-adenosyl-L-homocyst 95.8 0.021 4.6E-07 61.8 7.3 56 390-449 189-244 (425)
35 cd00401 AdoHcyase S-adenosyl-L 95.8 0.017 3.7E-07 62.3 6.6 51 394-448 183-233 (413)
36 PLN02494 adenosylhomocysteinas 95.7 0.02 4.4E-07 62.8 6.6 52 394-449 235-286 (477)
37 cd05311 NAD_bind_2_malic_enz N 95.7 0.033 7.2E-07 55.0 7.5 59 399-457 8-68 (226)
38 cd01078 NAD_bind_H4MPT_DH NADP 95.7 0.036 7.7E-07 52.5 7.4 54 394-448 6-60 (194)
39 PRK14175 bifunctional 5,10-met 95.7 0.024 5.3E-07 58.5 6.7 53 392-449 138-191 (286)
40 TIGR00936 ahcY adenosylhomocys 95.6 0.021 4.6E-07 61.5 6.3 51 394-448 176-226 (406)
41 PRK14192 bifunctional 5,10-met 95.6 0.035 7.6E-07 57.0 7.5 52 392-448 139-191 (283)
42 cd01080 NAD_bind_m-THF_DH_Cycl 95.6 0.038 8.1E-07 52.6 7.1 55 390-449 22-77 (168)
43 PRK06487 glycerate dehydrogena 95.1 0.04 8.7E-07 57.0 6.3 36 412-447 144-179 (317)
44 PF02882 THF_DHG_CYH_C: Tetrah 95.0 0.065 1.4E-06 50.9 6.8 53 392-449 16-69 (160)
45 PF13241 NAD_binding_7: Putati 94.9 0.028 6.1E-07 48.7 3.8 37 412-448 3-39 (103)
46 PLN03129 NADP-dependent malic 94.9 0.26 5.6E-06 55.5 11.9 124 323-462 244-380 (581)
47 PRK13243 glyoxylate reductase; 94.8 0.041 9E-07 57.3 5.3 37 411-448 145-181 (333)
48 PRK08410 2-hydroxyacid dehydro 94.8 0.04 8.7E-07 56.9 5.2 36 412-448 141-176 (311)
49 PRK14194 bifunctional 5,10-met 94.7 0.068 1.5E-06 55.6 6.6 53 392-449 139-192 (301)
50 PRK14176 bifunctional 5,10-met 94.7 0.071 1.5E-06 55.2 6.5 53 392-449 144-197 (287)
51 PF01488 Shikimate_DH: Shikima 94.7 0.058 1.3E-06 48.8 5.3 38 411-448 7-44 (135)
52 PRK10792 bifunctional 5,10-met 94.6 0.073 1.6E-06 55.0 6.5 53 392-449 139-192 (285)
53 COG0111 SerA Phosphoglycerate 94.6 0.044 9.6E-07 57.2 5.0 37 411-447 137-173 (324)
54 PLN02928 oxidoreductase family 94.6 0.048 1E-06 57.3 5.3 37 411-448 154-190 (347)
55 PRK06932 glycerate dehydrogena 94.6 0.045 9.8E-07 56.6 4.9 35 412-446 143-177 (314)
56 PRK07232 bifunctional malic en 94.5 0.24 5.2E-06 57.3 11.0 71 392-462 161-235 (752)
57 PRK12861 malic enzyme; Reviewe 94.4 0.26 5.6E-06 57.2 10.8 117 328-462 119-239 (764)
58 PRK14189 bifunctional 5,10-met 94.3 0.099 2.2E-06 54.0 6.6 52 392-448 138-190 (285)
59 PRK06436 glycerate dehydrogena 94.2 0.071 1.5E-06 55.1 5.4 35 413-447 119-153 (303)
60 COG0499 SAM1 S-adenosylhomocys 94.2 0.057 1.2E-06 57.7 4.7 52 394-449 190-241 (420)
61 PTZ00317 NADP-dependent malic 94.1 0.5 1.1E-05 53.1 12.0 123 323-462 221-355 (559)
62 PRK13529 malate dehydrogenase; 94.1 0.52 1.1E-05 53.0 12.1 118 323-457 219-346 (563)
63 PRK14191 bifunctional 5,10-met 94.0 0.13 2.9E-06 53.1 6.9 52 392-448 137-189 (285)
64 PRK15469 ghrA bifunctional gly 94.0 0.08 1.7E-06 54.9 5.3 35 413-447 133-167 (312)
65 cd05312 NAD_bind_1_malic_enz N 93.9 0.27 5.8E-06 50.8 8.7 68 395-462 4-82 (279)
66 cd05212 NAD_bind_m-THF_DH_Cycl 93.9 0.23 5E-06 46.1 7.5 52 393-449 9-61 (140)
67 PRK11790 D-3-phosphoglycerate 93.8 0.087 1.9E-06 56.5 5.4 35 412-446 147-181 (409)
68 PRK14188 bifunctional 5,10-met 93.8 0.16 3.5E-06 52.6 7.1 51 392-447 138-189 (296)
69 PF00070 Pyr_redox: Pyridine n 93.8 0.27 5.8E-06 40.2 6.9 53 418-473 1-53 (80)
70 COG0281 SfcA Malic enzyme [Ene 93.7 0.15 3.2E-06 55.4 6.8 65 392-456 175-241 (432)
71 PRK06719 precorrin-2 dehydroge 93.7 0.098 2.1E-06 49.0 4.8 35 412-446 9-43 (157)
72 cd01079 NAD_bind_m-THF_DH NAD 93.6 0.18 4E-06 49.6 6.7 61 392-453 33-99 (197)
73 PRK12480 D-lactate dehydrogena 93.5 0.11 2.4E-06 54.2 5.4 35 412-446 142-176 (330)
74 PRK00676 hemA glutamyl-tRNA re 93.5 0.18 4E-06 53.2 7.0 54 397-451 156-209 (338)
75 PRK06718 precorrin-2 dehydroge 93.5 0.1 2.3E-06 50.7 4.8 35 412-446 6-40 (202)
76 PRK15409 bifunctional glyoxyla 93.5 0.1 2.3E-06 54.3 5.1 35 411-445 140-175 (323)
77 TIGR01470 cysG_Nterm siroheme 93.3 0.12 2.6E-06 50.5 4.8 35 412-446 5-39 (205)
78 PRK12549 shikimate 5-dehydroge 93.2 0.23 4.9E-06 50.8 6.9 50 395-448 110-159 (284)
79 PLN02306 hydroxypyruvate reduc 93.2 0.12 2.6E-06 55.3 5.1 36 411-446 160-196 (386)
80 PF01262 AlaDh_PNT_C: Alanine 93.2 0.14 3E-06 47.9 4.9 35 413-448 17-51 (168)
81 PRK14179 bifunctional 5,10-met 93.1 0.26 5.7E-06 50.9 7.3 52 392-448 138-190 (284)
82 cd00762 NAD_bind_malic_enz NAD 93.1 0.21 4.6E-06 50.9 6.5 68 395-462 4-82 (254)
83 PLN03139 formate dehydrogenase 92.9 0.15 3.3E-06 54.6 5.3 38 411-449 194-231 (386)
84 cd05213 NAD_bind_Glutamyl_tRNA 92.8 0.28 6E-06 50.5 6.8 46 403-449 166-211 (311)
85 PRK14177 bifunctional 5,10-met 92.5 0.38 8.3E-06 49.8 7.5 53 392-449 139-192 (284)
86 PRK13940 glutamyl-tRNA reducta 92.5 0.24 5.2E-06 53.5 6.2 52 398-449 163-214 (414)
87 PRK07574 formate dehydrogenase 92.4 0.17 3.7E-06 54.2 5.0 36 412-448 188-223 (385)
88 PRK00258 aroE shikimate 5-dehy 92.4 0.35 7.5E-06 48.9 6.9 51 395-448 105-155 (278)
89 PF07991 IlvN: Acetohydroxy ac 92.4 0.17 3.7E-06 48.6 4.4 37 414-451 2-38 (165)
90 PF10727 Rossmann-like: Rossma 92.3 0.082 1.8E-06 48.4 2.0 33 416-448 10-42 (127)
91 TIGR01327 PGDH D-3-phosphoglyc 92.2 0.2 4.4E-06 55.3 5.3 36 411-446 133-168 (525)
92 COG0460 ThrA Homoserine dehydr 92.0 0.19 4.2E-06 53.0 4.7 44 416-459 3-57 (333)
93 PRK14183 bifunctional 5,10-met 91.9 0.37 7.9E-06 49.9 6.5 53 392-449 137-190 (281)
94 PRK14190 bifunctional 5,10-met 91.9 0.38 8.3E-06 49.8 6.6 52 392-448 138-190 (284)
95 PRK13403 ketol-acid reductoiso 91.7 0.25 5.5E-06 52.2 5.1 35 413-447 13-47 (335)
96 PRK14172 bifunctional 5,10-met 91.7 0.45 9.8E-06 49.1 6.8 53 392-449 138-191 (278)
97 COG0373 HemA Glutamyl-tRNA red 91.7 0.4 8.6E-06 52.1 6.7 53 396-448 158-210 (414)
98 PRK13581 D-3-phosphoglycerate 91.7 0.24 5.2E-06 54.8 5.1 36 411-446 135-170 (526)
99 PF03949 Malic_M: Malic enzyme 91.6 0.27 5.8E-06 50.2 5.1 62 395-456 4-75 (255)
100 PRK12862 malic enzyme; Reviewe 91.6 0.73 1.6E-05 53.6 9.1 100 349-462 140-243 (763)
101 PRK14169 bifunctional 5,10-met 91.6 0.47 1E-05 49.1 6.8 53 392-449 136-189 (282)
102 PLN02616 tetrahydrofolate dehy 91.5 0.52 1.1E-05 50.4 7.2 53 392-449 211-264 (364)
103 PRK14173 bifunctional 5,10-met 91.5 0.48 1E-05 49.1 6.8 53 392-449 135-188 (287)
104 PRK14170 bifunctional 5,10-met 91.5 0.47 1E-05 49.2 6.7 53 392-449 137-190 (284)
105 PF03807 F420_oxidored: NADP o 91.4 0.58 1.3E-05 39.0 6.1 31 418-448 1-34 (96)
106 PRK14186 bifunctional 5,10-met 91.4 0.5 1.1E-05 49.2 6.8 53 392-449 138-191 (297)
107 PRK14180 bifunctional 5,10-met 91.2 0.52 1.1E-05 48.8 6.7 53 392-449 138-191 (282)
108 COG0190 FolD 5,10-methylene-te 91.1 0.43 9.3E-06 49.4 6.0 53 392-449 136-189 (283)
109 PLN02516 methylenetetrahydrofo 91.0 0.56 1.2E-05 49.0 6.8 53 392-449 147-200 (299)
110 TIGR01809 Shik-DH-AROM shikima 91.0 0.56 1.2E-05 47.7 6.7 50 395-448 106-157 (282)
111 PRK14171 bifunctional 5,10-met 91.0 0.58 1.3E-05 48.6 6.8 54 392-450 139-193 (288)
112 PRK14178 bifunctional 5,10-met 90.9 0.5 1.1E-05 48.8 6.3 53 392-449 132-185 (279)
113 PRK12548 shikimate 5-dehydroge 90.8 0.64 1.4E-05 47.5 6.9 49 396-448 110-158 (289)
114 COG1648 CysG Siroheme synthase 90.8 0.37 8.1E-06 47.6 5.0 37 412-448 8-44 (210)
115 PRK14166 bifunctional 5,10-met 90.8 0.61 1.3E-05 48.3 6.7 53 392-449 137-190 (282)
116 PRK08605 D-lactate dehydrogena 90.7 0.32 6.8E-06 50.7 4.7 37 411-448 141-178 (332)
117 PRK05472 redox-sensing transcr 90.7 0.51 1.1E-05 45.9 5.9 53 396-449 65-119 (213)
118 PRK14187 bifunctional 5,10-met 90.7 0.62 1.3E-05 48.5 6.7 53 392-449 140-193 (294)
119 PF03447 NAD_binding_3: Homose 90.6 0.25 5.4E-06 43.1 3.2 33 423-456 1-37 (117)
120 TIGR01035 hemA glutamyl-tRNA r 90.6 0.61 1.3E-05 50.1 6.8 38 412-449 176-213 (417)
121 PRK00045 hemA glutamyl-tRNA re 90.4 0.63 1.4E-05 50.0 6.8 37 413-449 179-215 (423)
122 PF00899 ThiF: ThiF family; I 90.4 0.26 5.6E-06 44.2 3.3 34 416-449 2-35 (135)
123 PRK14027 quinate/shikimate deh 90.4 1.1 2.4E-05 45.9 8.2 50 395-448 110-159 (283)
124 TIGR02356 adenyl_thiF thiazole 90.3 0.56 1.2E-05 45.4 5.7 37 413-449 18-54 (202)
125 PRK12475 thiamine/molybdopteri 90.3 0.36 7.7E-06 50.7 4.6 38 413-450 21-58 (338)
126 PRK12749 quinate/shikimate deh 90.2 0.77 1.7E-05 47.2 7.0 51 395-449 107-157 (288)
127 PRK02472 murD UDP-N-acetylmura 90.2 0.46 1E-05 50.4 5.4 36 413-449 2-37 (447)
128 PRK14182 bifunctional 5,10-met 90.1 0.77 1.7E-05 47.6 6.8 53 392-449 137-190 (282)
129 TIGR00465 ilvC ketol-acid redu 90.1 0.48 1.1E-05 49.3 5.4 35 414-448 1-35 (314)
130 cd00757 ThiF_MoeB_HesA_family 89.9 0.42 9.2E-06 46.9 4.5 37 413-449 18-54 (228)
131 PRK09310 aroDE bifunctional 3- 89.9 0.81 1.7E-05 50.2 7.1 50 394-448 314-363 (477)
132 COG1052 LdhA Lactate dehydroge 89.8 0.43 9.3E-06 50.0 4.8 38 410-448 140-177 (324)
133 PRK05479 ketol-acid reductoiso 89.8 0.5 1.1E-05 49.8 5.2 32 413-444 14-45 (330)
134 PRK15116 sulfur acceptor prote 89.7 0.41 8.9E-06 49.0 4.4 36 414-449 28-63 (268)
135 TIGR00518 alaDH alanine dehydr 89.7 0.92 2E-05 48.1 7.2 34 414-448 165-198 (370)
136 PLN02520 bifunctional 3-dehydr 89.5 0.84 1.8E-05 50.7 7.0 54 394-448 351-410 (529)
137 PRK14193 bifunctional 5,10-met 89.3 0.93 2E-05 47.0 6.6 53 392-449 138-193 (284)
138 PRK14982 acyl-ACP reductase; P 89.2 0.99 2.1E-05 47.8 6.9 54 394-448 133-189 (340)
139 PRK14106 murD UDP-N-acetylmura 89.1 0.59 1.3E-05 49.6 5.3 36 413-449 2-37 (450)
140 PRK04690 murD UDP-N-acetylmura 89.0 0.53 1.1E-05 51.1 5.0 35 414-449 6-40 (468)
141 PRK01438 murD UDP-N-acetylmura 88.9 0.68 1.5E-05 49.9 5.6 39 409-448 9-47 (480)
142 PRK08289 glyceraldehyde-3-phos 88.9 3.3 7.1E-05 45.9 10.8 97 352-476 83-187 (477)
143 PRK14167 bifunctional 5,10-met 88.7 1.1 2.3E-05 46.9 6.6 53 392-449 137-194 (297)
144 COG0569 TrkA K+ transport syst 88.4 0.59 1.3E-05 46.2 4.3 30 417-446 1-30 (225)
145 PRK14181 bifunctional 5,10-met 88.3 1.2 2.6E-05 46.3 6.7 53 392-449 133-190 (287)
146 PLN02897 tetrahydrofolate dehy 88.3 1 2.3E-05 47.8 6.3 53 392-449 194-247 (345)
147 PRK08328 hypothetical protein; 88.2 0.59 1.3E-05 46.3 4.3 36 414-449 25-60 (231)
148 cd00755 YgdL_like Family of ac 88.2 0.59 1.3E-05 46.7 4.3 36 414-449 9-44 (231)
149 PRK09424 pntA NAD(P) transhydr 88.1 1.7 3.7E-05 48.4 8.1 35 413-448 162-196 (509)
150 PRK05690 molybdopterin biosynt 87.9 0.74 1.6E-05 46.1 4.8 37 413-449 29-65 (245)
151 PRK07060 short chain dehydroge 87.9 0.96 2.1E-05 42.9 5.4 35 412-446 5-40 (245)
152 PRK05717 oxidoreductase; Valid 87.9 0.92 2E-05 43.8 5.3 35 411-445 5-40 (255)
153 TIGR02355 moeB molybdopterin s 87.9 0.65 1.4E-05 46.4 4.4 37 413-449 21-57 (240)
154 TIGR00507 aroE shikimate 5-deh 87.8 1.5 3.3E-05 43.9 7.0 49 395-448 100-148 (270)
155 PRK12826 3-ketoacyl-(acyl-carr 87.7 0.9 1.9E-05 43.0 5.0 35 413-447 3-38 (251)
156 PLN00203 glutamyl-tRNA reducta 87.7 1.1 2.4E-05 49.8 6.5 54 396-449 244-299 (519)
157 cd08230 glucose_DH Glucose deh 87.6 1.3 2.7E-05 45.4 6.4 33 414-446 171-203 (355)
158 PRK08628 short chain dehydroge 87.5 0.91 2E-05 43.7 5.0 36 411-446 2-38 (258)
159 PRK14184 bifunctional 5,10-met 87.5 1.2 2.6E-05 46.2 6.2 53 392-449 137-194 (286)
160 PRK05225 ketol-acid reductoiso 87.5 0.34 7.4E-06 53.4 2.3 31 413-443 33-63 (487)
161 TIGR01832 kduD 2-deoxy-D-gluco 87.4 0.99 2.1E-05 43.1 5.1 34 413-446 2-36 (248)
162 TIGR02354 thiF_fam2 thiamine b 87.3 0.78 1.7E-05 44.7 4.4 37 413-449 18-54 (200)
163 TIGR01202 bchC 2-desacetyl-2-h 87.3 0.85 1.8E-05 46.0 4.8 35 414-448 143-177 (308)
164 PF01113 DapB_N: Dihydrodipico 87.2 0.91 2E-05 40.7 4.5 34 417-450 1-36 (124)
165 cd01492 Aos1_SUMO Ubiquitin ac 87.2 0.62 1.3E-05 45.1 3.7 37 413-449 18-54 (197)
166 smart00846 Gp_dh_N Glyceraldeh 87.1 1.4 3E-05 41.3 5.7 50 417-475 1-51 (149)
167 PLN02712 arogenate dehydrogena 87.1 0.92 2E-05 51.9 5.5 37 410-446 363-399 (667)
168 COG1064 AdhP Zn-dependent alco 87.0 0.92 2E-05 48.1 5.1 34 415-448 166-199 (339)
169 KOG0022 Alcohol dehydrogenase, 87.0 0.71 1.5E-05 49.0 4.1 57 382-445 166-223 (375)
170 PRK12828 short chain dehydroge 87.0 1.1 2.4E-05 41.9 5.2 34 413-446 4-38 (239)
171 PRK14168 bifunctional 5,10-met 86.9 1.5 3.2E-05 45.8 6.4 53 392-449 141-198 (297)
172 cd01485 E1-1_like Ubiquitin ac 86.9 0.72 1.6E-05 44.7 3.9 36 414-449 17-52 (198)
173 PRK14174 bifunctional 5,10-met 86.8 1.6 3.4E-05 45.5 6.6 53 392-449 139-196 (295)
174 PLN02586 probable cinnamyl alc 86.8 1.9 4.1E-05 44.7 7.2 35 414-448 182-216 (360)
175 PRK14185 bifunctional 5,10-met 86.7 1.6 3.5E-05 45.4 6.6 53 392-449 137-194 (293)
176 KOG2380 Prephenate dehydrogena 86.6 0.73 1.6E-05 49.4 4.0 33 416-448 52-84 (480)
177 PRK08644 thiamine biosynthesis 86.4 0.87 1.9E-05 44.7 4.2 37 413-449 25-61 (212)
178 PF03721 UDPG_MGDP_dh_N: UDP-g 86.3 0.88 1.9E-05 43.7 4.2 31 417-448 1-31 (185)
179 PRK07688 thiamine/molybdopteri 86.2 0.88 1.9E-05 47.8 4.5 37 413-449 21-57 (339)
180 PRK07523 gluconate 5-dehydroge 86.2 1.3 2.7E-05 42.8 5.2 35 413-448 7-42 (255)
181 PLN02240 UDP-glucose 4-epimera 85.8 1.3 2.8E-05 44.8 5.3 34 413-446 2-36 (352)
182 PRK06125 short chain dehydroge 85.8 1.5 3.1E-05 42.5 5.4 35 412-446 3-38 (259)
183 COG1179 Dinucleotide-utilizing 85.7 0.73 1.6E-05 47.2 3.3 35 414-448 28-62 (263)
184 PRK04308 murD UDP-N-acetylmura 85.6 1.3 2.8E-05 47.3 5.4 36 413-449 2-37 (445)
185 PF00044 Gp_dh_N: Glyceraldehy 85.6 1.2 2.5E-05 42.1 4.4 52 417-476 1-53 (151)
186 PRK01710 murD UDP-N-acetylmura 85.6 1.1 2.5E-05 48.2 5.0 36 413-449 11-46 (458)
187 PRK04148 hypothetical protein; 85.5 1.6 3.4E-05 40.7 5.2 33 414-448 15-47 (134)
188 COG1748 LYS9 Saccharopine dehy 85.5 1.4 3E-05 47.6 5.6 32 417-449 2-34 (389)
189 PRK09880 L-idonate 5-dehydroge 85.5 3.3 7.2E-05 42.2 8.1 32 414-445 168-200 (343)
190 PRK08217 fabG 3-ketoacyl-(acyl 85.4 1.6 3.4E-05 41.4 5.4 34 413-446 2-36 (253)
191 PRK08223 hypothetical protein; 85.4 0.93 2E-05 47.0 4.0 37 413-449 24-60 (287)
192 PRK06138 short chain dehydroge 85.3 1.5 3.2E-05 41.8 5.2 34 413-446 2-36 (252)
193 PF03446 NAD_binding_2: NAD bi 85.3 1.3 2.9E-05 41.0 4.7 31 417-448 2-32 (163)
194 KOG1370 S-adenosylhomocysteine 85.3 0.82 1.8E-05 48.4 3.6 35 413-448 211-245 (434)
195 PLN02358 glyceraldehyde-3-phos 85.3 1.5 3.2E-05 46.5 5.5 52 417-476 6-58 (338)
196 PRK05562 precorrin-2 dehydroge 85.2 1.3 2.9E-05 44.3 4.9 37 412-448 21-57 (223)
197 PRK06841 short chain dehydroge 85.1 1.5 3.3E-05 42.0 5.2 35 412-446 11-46 (255)
198 PRK05557 fabG 3-ketoacyl-(acyl 85.1 1.8 4E-05 40.6 5.6 36 413-448 2-38 (248)
199 PRK02006 murD UDP-N-acetylmura 85.1 1.3 2.8E-05 48.3 5.2 36 413-449 4-39 (498)
200 TIGR01921 DAP-DH diaminopimela 85.0 1.5 3.2E-05 46.4 5.3 34 416-449 3-37 (324)
201 PRK05786 fabG 3-ketoacyl-(acyl 85.0 1.7 3.6E-05 41.2 5.3 34 413-446 2-36 (238)
202 PRK13535 erythrose 4-phosphate 85.0 2.2 4.9E-05 45.1 6.7 50 417-475 2-55 (336)
203 COG0057 GapA Glyceraldehyde-3- 84.8 2.9 6.3E-05 44.4 7.4 50 417-475 2-53 (335)
204 PRK07231 fabG 3-ketoacyl-(acyl 84.7 1.7 3.7E-05 41.3 5.2 34 413-446 2-36 (251)
205 PRK01390 murD UDP-N-acetylmura 84.7 1.4 3E-05 47.3 5.2 35 414-449 7-41 (460)
206 PRK13302 putative L-aspartate 84.7 1.5 3.2E-05 44.6 5.1 35 414-448 4-40 (271)
207 PRK06949 short chain dehydroge 84.6 1.8 3.9E-05 41.5 5.4 35 412-446 5-40 (258)
208 PRK06523 short chain dehydroge 84.5 1.6 3.6E-05 42.0 5.1 35 412-446 5-40 (260)
209 PRK03369 murD UDP-N-acetylmura 84.5 1.4 3.1E-05 48.1 5.2 34 414-448 10-43 (488)
210 KOG0069 Glyoxylate/hydroxypyru 84.5 1.2 2.6E-05 47.3 4.4 34 410-443 156-189 (336)
211 PRK13394 3-hydroxybutyrate deh 84.4 1.7 3.7E-05 41.6 5.2 34 413-446 4-38 (262)
212 PRK07774 short chain dehydroge 84.3 1.8 3.9E-05 41.3 5.2 34 413-446 3-37 (250)
213 PRK08416 7-alpha-hydroxysteroi 84.3 1.9 4.1E-05 41.9 5.5 37 412-448 4-41 (260)
214 PRK00141 murD UDP-N-acetylmura 84.2 1.5 3.2E-05 47.7 5.2 35 413-448 12-46 (473)
215 cd01483 E1_enzyme_family Super 84.2 1.5 3.2E-05 39.6 4.3 32 418-449 1-32 (143)
216 PRK12938 acetyacetyl-CoA reduc 84.2 1.9 4.2E-05 41.1 5.4 34 414-447 1-35 (246)
217 PRK06153 hypothetical protein; 84.0 1 2.2E-05 48.7 3.7 37 413-449 173-209 (393)
218 PRK08261 fabG 3-ketoacyl-(acyl 83.8 6 0.00013 42.1 9.4 34 412-445 206-240 (450)
219 PRK12742 oxidoreductase; Provi 83.8 2.1 4.5E-05 40.5 5.4 34 413-446 3-37 (237)
220 PRK06300 enoyl-(acyl carrier p 83.7 1.7 3.6E-05 44.7 5.0 36 411-447 3-41 (299)
221 PRK09072 short chain dehydroge 83.6 2 4.4E-05 41.6 5.4 34 413-446 2-36 (263)
222 COG2344 AT-rich DNA-binding pr 83.6 2.4 5.3E-05 42.1 5.8 76 395-471 64-143 (211)
223 PRK06172 short chain dehydroge 83.4 2.1 4.6E-05 41.0 5.4 35 412-446 3-38 (253)
224 PRK08642 fabG 3-ketoacyl-(acyl 83.3 2.3 4.9E-05 40.6 5.5 35 413-447 2-37 (253)
225 KOG0068 D-3-phosphoglycerate d 83.3 0.98 2.1E-05 48.3 3.2 35 410-444 140-174 (406)
226 PRK05875 short chain dehydroge 83.2 2.2 4.7E-05 41.6 5.4 34 413-446 4-38 (276)
227 TIGR00561 pntA NAD(P) transhyd 83.1 3.2 7E-05 46.3 7.2 36 413-449 161-196 (511)
228 PRK08264 short chain dehydroge 83.1 2.1 4.5E-05 40.6 5.1 34 413-446 3-38 (238)
229 PF01408 GFO_IDH_MocA: Oxidore 83.0 2.2 4.7E-05 36.6 4.8 32 417-448 1-34 (120)
230 COG0059 IlvC Ketol-acid reduct 83.0 1.1 2.4E-05 47.2 3.4 49 413-462 15-67 (338)
231 PRK12429 3-hydroxybutyrate deh 83.0 2.2 4.7E-05 40.7 5.2 33 414-446 2-35 (258)
232 PRK08703 short chain dehydroge 83.0 2.1 4.6E-05 40.8 5.1 34 413-446 3-37 (239)
233 PRK06057 short chain dehydroge 83.0 2.1 4.5E-05 41.4 5.1 33 413-445 4-37 (255)
234 COG0169 AroE Shikimate 5-dehyd 83.0 5.9 0.00013 41.1 8.6 51 396-448 108-158 (283)
235 PRK05597 molybdopterin biosynt 82.8 1.5 3.3E-05 46.2 4.5 37 413-449 25-61 (355)
236 COG2085 Predicted dinucleotide 82.8 1.8 3.9E-05 43.2 4.6 31 417-448 2-32 (211)
237 PRK10637 cysG siroheme synthas 82.7 1.7 3.7E-05 47.3 4.9 36 412-447 8-43 (457)
238 PRK08993 2-deoxy-D-gluconate 3 82.6 2.2 4.7E-05 41.4 5.1 34 413-446 7-41 (253)
239 PRK06550 fabG 3-ketoacyl-(acyl 82.6 2.2 4.9E-05 40.3 5.1 34 413-446 2-36 (235)
240 PRK12939 short chain dehydroge 82.5 2.4 5.1E-05 40.3 5.2 34 413-446 4-38 (250)
241 TIGR02622 CDP_4_6_dhtase CDP-g 82.5 2 4.3E-05 43.9 5.0 33 414-446 2-35 (349)
242 PRK06505 enoyl-(acyl carrier p 82.4 2.1 4.6E-05 42.4 5.1 33 413-445 4-39 (271)
243 PRK07411 hypothetical protein; 82.4 1.5 3.3E-05 46.9 4.2 36 414-449 36-71 (390)
244 PRK09186 flagellin modificatio 82.4 2.2 4.8E-05 40.8 5.0 33 414-446 2-35 (256)
245 PRK06522 2-dehydropantoate 2-r 82.3 1.9 4.2E-05 42.9 4.8 30 417-446 1-30 (304)
246 PRK07576 short chain dehydroge 82.2 2.4 5.1E-05 41.5 5.2 34 413-446 6-40 (264)
247 PRK14619 NAD(P)H-dependent gly 82.1 2.1 4.5E-05 43.7 5.0 34 415-449 3-36 (308)
248 PLN02256 arogenate dehydrogena 82.0 3.1 6.7E-05 43.1 6.3 36 413-448 33-68 (304)
249 PRK08945 putative oxoacyl-(acy 82.0 2.2 4.7E-05 40.9 4.8 34 413-446 9-43 (247)
250 PRK05876 short chain dehydroge 82.0 2.4 5.2E-05 42.1 5.2 35 413-448 3-38 (275)
251 PRK07533 enoyl-(acyl carrier p 82.0 2.2 4.9E-05 41.7 5.0 36 412-448 6-44 (258)
252 PRK07806 short chain dehydroge 81.9 2.7 5.8E-05 40.1 5.4 35 413-447 3-38 (248)
253 PLN02178 cinnamyl-alcohol dehy 81.8 4 8.6E-05 42.9 7.0 34 415-448 178-211 (375)
254 PRK08339 short chain dehydroge 81.7 2.5 5.5E-05 41.5 5.3 34 412-445 4-38 (263)
255 PRK08936 glucose-1-dehydrogena 81.7 3 6.6E-05 40.4 5.7 36 412-447 3-39 (261)
256 PRK05867 short chain dehydroge 81.7 2.5 5.5E-05 40.7 5.1 33 413-445 6-39 (253)
257 PRK12829 short chain dehydroge 81.6 2.5 5.4E-05 40.6 5.1 34 413-446 8-42 (264)
258 COG5322 Predicted dehydrogenas 81.6 2.8 6.1E-05 43.9 5.6 51 393-443 144-195 (351)
259 PLN02514 cinnamyl-alcohol dehy 81.6 4.5 9.7E-05 41.7 7.3 42 407-448 172-213 (357)
260 PRK12550 shikimate 5-dehydroge 81.5 4.1 8.9E-05 41.7 6.8 49 395-448 106-154 (272)
261 PRK07878 molybdopterin biosynt 81.4 1.7 3.7E-05 46.4 4.3 36 414-449 40-75 (392)
262 PRK12748 3-ketoacyl-(acyl-carr 81.3 2.3 5E-05 41.1 4.7 34 413-446 2-38 (256)
263 PRK05600 thiamine biosynthesis 81.3 1.8 4E-05 46.0 4.4 36 414-449 39-74 (370)
264 PLN02896 cinnamyl-alcohol dehy 81.3 2.8 6E-05 42.9 5.6 37 411-447 5-42 (353)
265 TIGR03325 BphB_TodD cis-2,3-di 81.3 2.8 6E-05 40.8 5.3 33 413-445 2-35 (262)
266 PRK07062 short chain dehydroge 81.1 2.8 6.1E-05 40.6 5.3 34 412-445 4-38 (265)
267 KOG1196 Predicted NAD-dependen 81.1 3.5 7.5E-05 43.6 6.1 57 386-449 131-188 (343)
268 TIGR03628 arch_S11P archaeal r 81.0 5.5 0.00012 36.3 6.7 64 388-451 37-109 (114)
269 PRK06197 short chain dehydroge 81.0 2.7 5.8E-05 42.1 5.2 36 412-447 12-48 (306)
270 PLN02272 glyceraldehyde-3-phos 81.0 3.4 7.4E-05 45.1 6.3 52 417-476 86-138 (421)
271 TIGR01532 E4PD_g-proteo D-eryt 81.0 3.1 6.7E-05 43.8 5.9 48 418-474 1-52 (325)
272 TIGR03366 HpnZ_proposed putati 80.8 5.1 0.00011 39.7 7.1 32 414-445 119-151 (280)
273 PF02737 3HCDH_N: 3-hydroxyacy 80.8 4.9 0.00011 38.3 6.7 30 418-448 1-30 (180)
274 PRK05579 bifunctional phosphop 80.8 4 8.6E-05 44.1 6.7 45 412-457 184-245 (399)
275 PRK06398 aldose dehydrogenase; 80.7 3 6.5E-05 40.7 5.3 34 413-446 3-37 (258)
276 PRK06124 gluconate 5-dehydroge 80.7 3 6.5E-05 40.1 5.3 35 412-446 7-42 (256)
277 PRK12937 short chain dehydroge 80.7 3.4 7.4E-05 39.2 5.6 35 413-447 2-37 (245)
278 PLN03096 glyceraldehyde-3-phos 80.6 3.5 7.5E-05 44.7 6.2 50 417-475 61-113 (395)
279 PRK00421 murC UDP-N-acetylmura 80.6 2.3 5E-05 45.8 4.9 35 414-449 5-40 (461)
280 TIGR03736 PRTRC_ThiF PRTRC sys 80.6 2.2 4.7E-05 43.3 4.4 26 415-440 10-35 (244)
281 PRK12769 putative oxidoreducta 80.5 2.3 4.9E-05 48.1 5.0 33 415-448 326-358 (654)
282 PRK07326 short chain dehydroge 80.4 3 6.5E-05 39.4 5.1 33 414-446 4-37 (237)
283 PRK08762 molybdopterin biosynt 80.4 1.9 4.1E-05 45.6 4.1 37 413-449 132-168 (376)
284 cd08231 MDR_TM0436_like Hypoth 80.3 5.3 0.00012 40.7 7.2 41 407-447 169-210 (361)
285 PRK15181 Vi polysaccharide bio 80.3 2.6 5.6E-05 43.3 5.0 36 412-447 11-47 (348)
286 PRK08213 gluconate 5-dehydroge 80.3 3.1 6.6E-05 40.2 5.2 34 413-446 9-43 (259)
287 PRK12771 putative glutamate sy 80.3 2.3 5E-05 47.1 4.9 34 414-448 135-168 (564)
288 PRK09260 3-hydroxybutyryl-CoA 80.3 4 8.8E-05 41.1 6.3 31 417-448 2-32 (288)
289 PRK06463 fabG 3-ketoacyl-(acyl 80.2 3.6 7.8E-05 39.7 5.7 35 412-446 3-38 (255)
290 PLN02653 GDP-mannose 4,6-dehyd 80.2 2.5 5.4E-05 42.9 4.8 34 413-446 3-37 (340)
291 PRK07890 short chain dehydroge 80.1 2.8 6.1E-05 40.2 4.8 32 414-445 3-35 (258)
292 PRK09607 rps11p 30S ribosomal 80.1 6.4 0.00014 36.8 6.9 65 388-452 44-117 (132)
293 PRK09135 pteridine reductase; 80.0 3.3 7.2E-05 39.1 5.3 34 414-447 4-38 (249)
294 PF13460 NAD_binding_10: NADH( 80.0 2.9 6.2E-05 38.2 4.7 32 419-450 1-33 (183)
295 cd08295 double_bond_reductase_ 80.0 5.7 0.00012 40.2 7.3 35 414-448 150-185 (338)
296 PRK06196 oxidoreductase; Provi 80.0 3.2 6.9E-05 41.9 5.4 36 411-446 21-57 (315)
297 PRK06079 enoyl-(acyl carrier p 80.0 2.9 6.3E-05 40.7 5.0 33 413-445 4-39 (252)
298 PRK05653 fabG 3-ketoacyl-(acyl 79.9 3.5 7.5E-05 38.7 5.3 34 413-446 2-36 (246)
299 PRK08063 enoyl-(acyl carrier p 79.9 3.5 7.5E-05 39.3 5.4 34 414-447 2-36 (250)
300 PRK07035 short chain dehydroge 79.9 3.3 7.1E-05 39.8 5.2 34 413-446 5-39 (252)
301 PRK06500 short chain dehydroge 79.9 3.2 6.8E-05 39.5 5.1 34 413-446 3-37 (249)
302 PRK08226 short chain dehydroge 79.7 3.3 7.1E-05 40.0 5.2 34 413-446 3-37 (263)
303 PLN03154 putative allyl alcoho 79.7 5.6 0.00012 41.1 7.2 34 414-447 157-191 (348)
304 PRK07814 short chain dehydroge 79.7 3.2 6.9E-05 40.4 5.2 34 413-446 7-41 (263)
305 TIGR03632 bact_S11 30S ribosom 79.6 6.5 0.00014 35.1 6.6 65 389-453 35-100 (108)
306 COG0771 MurD UDP-N-acetylmuram 79.5 2.2 4.8E-05 46.9 4.4 36 413-449 4-39 (448)
307 PRK07236 hypothetical protein; 79.4 3 6.6E-05 43.3 5.2 41 414-455 4-44 (386)
308 PRK12823 benD 1,6-dihydroxycyc 79.4 3.4 7.3E-05 39.9 5.2 36 412-448 4-40 (260)
309 PRK08085 gluconate 5-dehydroge 79.4 3.5 7.6E-05 39.7 5.3 35 413-448 6-41 (254)
310 PRK06171 sorbitol-6-phosphate 79.3 3.3 7.2E-05 40.1 5.1 33 413-445 6-39 (266)
311 PRK07200 aspartate/ornithine c 79.3 84 0.0018 34.3 16.1 128 307-444 56-223 (395)
312 PLN00141 Tic62-NAD(P)-related 79.3 3.2 7E-05 40.4 5.0 36 412-447 13-49 (251)
313 COG2130 Putative NADP-dependen 79.3 3.4 7.4E-05 43.7 5.4 55 387-448 129-184 (340)
314 PRK06349 homoserine dehydrogen 79.2 2.4 5.1E-05 45.9 4.5 36 416-451 3-48 (426)
315 COG0604 Qor NADPH:quinone redu 79.2 3.9 8.5E-05 42.5 5.9 56 392-448 118-176 (326)
316 PRK12746 short chain dehydroge 79.2 3.9 8.5E-05 39.2 5.5 33 413-445 3-36 (254)
317 PRK07831 short chain dehydroge 79.2 3.1 6.6E-05 40.4 4.8 35 413-448 14-50 (262)
318 KOG1257 NADP+-dependent malic 79.2 19 0.00042 40.6 11.3 122 324-461 234-367 (582)
319 PLN02206 UDP-glucuronate decar 79.2 3 6.4E-05 45.2 5.2 36 411-446 114-150 (442)
320 PRK09496 trkA potassium transp 79.0 4.6 9.9E-05 42.8 6.5 36 412-448 227-262 (453)
321 KOG0023 Alcohol dehydrogenase, 79.0 3.3 7.1E-05 44.2 5.2 43 406-449 173-215 (360)
322 PRK12825 fabG 3-ketoacyl-(acyl 79.0 4 8.7E-05 38.3 5.4 36 413-448 3-39 (249)
323 TIGR03206 benzo_BadH 2-hydroxy 78.9 3.4 7.4E-05 39.3 5.0 32 414-445 1-33 (250)
324 PF02254 TrkA_N: TrkA-N domain 78.9 3.7 8.1E-05 35.1 4.8 29 419-448 1-29 (116)
325 KOG0029 Amine oxidase [Seconda 78.9 2.5 5.4E-05 47.0 4.6 35 413-448 12-46 (501)
326 TIGR01743 purR_Bsub pur operon 78.8 23 0.00049 36.6 11.2 32 415-446 193-228 (268)
327 PRK06935 2-deoxy-D-gluconate 3 78.8 3.6 7.9E-05 39.8 5.2 35 412-446 11-46 (258)
328 PRK12481 2-deoxy-D-gluconate 3 78.7 3.5 7.6E-05 40.0 5.1 34 413-446 5-39 (251)
329 PF13738 Pyr_redox_3: Pyridine 78.7 2.8 6.1E-05 38.8 4.3 33 413-445 164-196 (203)
330 PRK06077 fabG 3-ketoacyl-(acyl 78.7 4.1 8.9E-05 38.8 5.5 35 413-447 3-38 (252)
331 PRK07478 short chain dehydroge 78.6 3.8 8.2E-05 39.5 5.3 34 413-446 3-37 (254)
332 PRK05866 short chain dehydroge 78.6 3.8 8.3E-05 41.2 5.5 36 411-446 35-71 (293)
333 PRK05872 short chain dehydroge 78.6 3.6 7.9E-05 41.2 5.3 34 412-445 5-39 (296)
334 PRK13304 L-aspartate dehydroge 78.6 3 6.5E-05 42.1 4.7 33 417-449 2-36 (265)
335 PRK01368 murD UDP-N-acetylmura 78.4 2.9 6.3E-05 45.4 4.9 33 414-448 4-36 (454)
336 PRK08594 enoyl-(acyl carrier p 78.4 3.4 7.3E-05 40.6 4.9 34 412-445 3-39 (257)
337 PLN02662 cinnamyl-alcohol dehy 78.4 3.3 7.1E-05 41.2 4.9 32 415-446 3-35 (322)
338 PRK05309 30S ribosomal protein 78.3 7.4 0.00016 35.9 6.7 65 389-453 52-117 (128)
339 PRK09242 tropinone reductase; 78.3 3.8 8.2E-05 39.5 5.1 34 413-446 6-40 (257)
340 PRK07856 short chain dehydroge 78.2 4.2 9E-05 39.2 5.4 35 412-446 2-37 (252)
341 PRK07063 short chain dehydroge 78.2 3.8 8.2E-05 39.6 5.1 33 413-445 4-37 (260)
342 PRK07403 glyceraldehyde-3-phos 78.2 4.6 0.0001 42.9 6.1 51 417-476 2-55 (337)
343 PRK05565 fabG 3-ketoacyl-(acyl 78.2 4 8.7E-05 38.5 5.2 33 413-445 2-35 (247)
344 PRK07792 fabG 3-ketoacyl-(acyl 78.1 3.9 8.4E-05 41.4 5.4 37 411-448 7-44 (306)
345 cd01491 Ube1_repeat1 Ubiquitin 78.1 2.7 5.8E-05 43.6 4.2 36 414-449 17-52 (286)
346 PRK09599 6-phosphogluconate de 78.1 3.1 6.7E-05 42.4 4.7 31 417-448 1-31 (301)
347 PLN02986 cinnamyl-alcohol dehy 78.0 4.4 9.6E-05 40.7 5.7 35 414-448 3-38 (322)
348 cd01487 E1_ThiF_like E1_ThiF_l 78.0 2.8 6E-05 39.8 4.1 32 418-449 1-32 (174)
349 PRK15425 gapA glyceraldehyde-3 77.9 6.3 0.00014 41.8 7.0 51 417-476 3-54 (331)
350 CHL00041 rps11 ribosomal prote 77.9 7.9 0.00017 35.1 6.7 65 389-453 48-113 (116)
351 TIGR01318 gltD_gamma_fam gluta 77.8 7 0.00015 42.5 7.5 33 415-448 140-172 (467)
352 PRK08017 oxidoreductase; Provi 77.8 3.6 7.7E-05 39.4 4.8 30 417-446 3-33 (256)
353 PRK06194 hypothetical protein; 77.8 4 8.6E-05 40.0 5.2 34 413-446 3-37 (287)
354 PLN02695 GDP-D-mannose-3',5'-e 77.6 3.4 7.5E-05 43.2 5.0 32 415-446 20-52 (370)
355 PRK07825 short chain dehydroge 77.6 4.3 9.4E-05 39.6 5.4 33 413-445 2-35 (273)
356 cd08239 THR_DH_like L-threonin 77.5 6.4 0.00014 39.7 6.7 32 415-446 163-195 (339)
357 TIGR01534 GAPDH-I glyceraldehy 77.4 3.9 8.5E-05 43.2 5.3 49 418-475 1-52 (327)
358 PRK12859 3-ketoacyl-(acyl-carr 77.4 3.6 7.8E-05 40.0 4.8 33 413-445 3-38 (256)
359 PRK09496 trkA potassium transp 77.4 3 6.5E-05 44.1 4.5 30 417-446 1-30 (453)
360 PLN02730 enoyl-[acyl-carrier-p 77.3 3.3 7.2E-05 42.7 4.7 34 411-444 4-40 (303)
361 cd08294 leukotriene_B4_DH_like 77.3 8.1 0.00017 38.3 7.3 35 414-448 142-177 (329)
362 PRK00711 D-amino acid dehydrog 77.3 3.3 7.2E-05 43.1 4.7 31 417-448 1-31 (416)
363 PRK05993 short chain dehydroge 77.3 4 8.6E-05 40.3 5.1 32 415-446 3-35 (277)
364 PRK08265 short chain dehydroge 77.1 4.3 9.2E-05 39.6 5.2 33 413-445 3-36 (261)
365 PRK00683 murD UDP-N-acetylmura 77.1 3.6 7.8E-05 43.8 5.0 34 415-449 2-35 (418)
366 PRK12827 short chain dehydroge 76.9 4.3 9.3E-05 38.4 5.0 34 413-446 3-37 (249)
367 PRK06198 short chain dehydroge 76.8 4.2 9.1E-05 39.1 5.0 35 413-448 3-39 (260)
368 PLN00198 anthocyanidin reducta 76.8 4.1 9E-05 41.3 5.2 34 413-446 6-40 (338)
369 PRK07577 short chain dehydroge 76.7 4.4 9.5E-05 38.2 5.0 33 415-447 2-35 (234)
370 PRK12409 D-amino acid dehydrog 76.7 3.4 7.4E-05 43.1 4.7 31 417-448 2-32 (410)
371 TIGR02818 adh_III_F_hyde S-(hy 76.7 7.4 0.00016 40.3 7.1 33 414-446 184-217 (368)
372 PRK03806 murD UDP-N-acetylmura 76.6 4.2 9E-05 43.3 5.4 36 413-449 3-38 (438)
373 PLN02214 cinnamoyl-CoA reducta 76.6 4.1 8.9E-05 41.9 5.2 33 414-446 8-41 (342)
374 cd05188 MDR Medium chain reduc 76.5 10 0.00022 35.9 7.4 41 408-448 127-167 (271)
375 PLN02427 UDP-apiose/xylose syn 76.5 4.2 9.1E-05 42.3 5.2 37 411-447 9-47 (386)
376 PRK05854 short chain dehydroge 76.4 4.3 9.4E-05 41.2 5.2 35 412-446 10-45 (313)
377 PRK08220 2,3-dihydroxybenzoate 76.4 5.1 0.00011 38.2 5.4 35 412-446 4-39 (252)
378 PRK02705 murD UDP-N-acetylmura 76.3 3.7 8E-05 43.9 4.9 31 418-449 2-32 (459)
379 PRK08589 short chain dehydroge 76.3 4.7 0.0001 39.7 5.3 33 413-445 3-36 (272)
380 TIGR03201 dearomat_had 6-hydro 76.2 4.3 9.3E-05 41.5 5.1 32 415-446 166-197 (349)
381 PF02558 ApbA: Ketopantoate re 76.2 4.6 9.9E-05 36.2 4.7 30 419-448 1-30 (151)
382 PRK00048 dihydrodipicolinate r 76.2 4.1 8.9E-05 40.9 4.9 34 417-450 2-37 (257)
383 PRK06182 short chain dehydroge 76.1 4.6 9.9E-05 39.5 5.1 32 415-446 2-34 (273)
384 PRK06914 short chain dehydroge 76.0 4.6 0.0001 39.4 5.1 32 415-446 2-34 (280)
385 PRK07666 fabG 3-ketoacyl-(acyl 76.0 5.1 0.00011 38.1 5.3 34 413-446 4-38 (239)
386 PRK12490 6-phosphogluconate de 76.0 3.8 8.3E-05 41.7 4.7 30 418-448 2-31 (299)
387 cd08242 MDR_like Medium chain 76.0 4.6 0.0001 40.1 5.2 34 414-447 154-187 (319)
388 PRK07889 enoyl-(acyl carrier p 76.0 4.5 9.8E-05 39.6 5.0 33 413-445 4-39 (256)
389 PRK04207 glyceraldehyde-3-phos 75.8 3.9 8.5E-05 43.0 4.8 33 417-449 2-35 (341)
390 PRK07984 enoyl-(acyl carrier p 75.8 4.5 9.8E-05 40.1 5.0 34 414-448 4-40 (262)
391 PRK06035 3-hydroxyacyl-CoA deh 75.8 4 8.7E-05 41.2 4.7 31 417-448 4-34 (291)
392 TIGR01915 npdG NADPH-dependent 75.7 4.4 9.6E-05 39.4 4.8 31 417-448 1-32 (219)
393 PLN02253 xanthoxin dehydrogena 75.6 4.9 0.00011 39.3 5.2 33 413-445 15-48 (280)
394 PRK10309 galactitol-1-phosphat 75.6 4.5 9.8E-05 41.1 5.1 34 414-447 159-192 (347)
395 PRK08277 D-mannonate oxidoredu 75.6 4.9 0.00011 39.3 5.2 34 412-445 6-40 (278)
396 PRK12744 short chain dehydroge 75.5 4.9 0.00011 38.8 5.1 34 413-446 5-39 (257)
397 PRK08278 short chain dehydroge 75.5 5.2 0.00011 39.4 5.4 34 413-446 3-37 (273)
398 TIGR02825 B4_12hDH leukotriene 75.5 8.9 0.00019 38.5 7.1 35 414-448 137-172 (325)
399 PRK12810 gltD glutamate syntha 75.3 3.8 8.3E-05 44.3 4.7 33 415-448 142-174 (471)
400 PLN02545 3-hydroxybutyryl-CoA 75.3 4.3 9.3E-05 41.0 4.8 31 417-448 5-35 (295)
401 TIGR01381 E1_like_apg7 E1-like 75.3 3.3 7.2E-05 47.5 4.4 37 413-449 335-371 (664)
402 PRK08415 enoyl-(acyl carrier p 75.3 4.5 9.8E-05 40.4 4.9 35 413-448 2-39 (274)
403 PRK14851 hypothetical protein; 75.3 3.3 7.1E-05 47.7 4.4 36 414-449 41-76 (679)
404 PRK07370 enoyl-(acyl carrier p 75.3 4.4 9.6E-05 39.7 4.8 33 413-445 3-38 (258)
405 COG0686 Ald Alanine dehydrogen 75.2 5.2 0.00011 42.6 5.4 34 414-448 166-199 (371)
406 PRK07067 sorbitol dehydrogenas 75.2 4.9 0.00011 38.7 5.0 33 413-445 3-36 (257)
407 PF01494 FAD_binding_3: FAD bi 75.1 4.2 9.1E-05 40.1 4.6 32 418-450 3-34 (356)
408 PRK12809 putative oxidoreducta 75.1 3.9 8.4E-05 46.3 4.8 34 415-449 309-342 (639)
409 PRK06249 2-dehydropantoate 2-r 75.0 3.5 7.7E-05 42.1 4.2 33 415-447 4-36 (313)
410 PRK12831 putative oxidoreducta 74.9 4.2 9.2E-05 44.2 4.9 34 414-448 138-171 (464)
411 PRK06567 putative bifunctional 74.9 3.8 8.3E-05 49.2 4.8 34 414-448 381-414 (1028)
412 PRK12359 flavodoxin FldB; Prov 74.8 6.5 0.00014 37.8 5.6 43 412-454 75-127 (172)
413 PRK07417 arogenate dehydrogena 74.7 4.5 9.7E-05 40.8 4.7 31 417-448 1-31 (279)
414 PF00411 Ribosomal_S11: Riboso 74.7 9.6 0.00021 34.0 6.3 65 390-454 36-101 (110)
415 PRK06200 2,3-dihydroxy-2,3-dih 74.6 5.3 0.00012 38.7 5.1 33 414-446 4-37 (263)
416 COG0100 RpsK Ribosomal protein 74.6 12 0.00026 34.9 7.0 72 378-449 37-114 (129)
417 PRK09620 hypothetical protein; 74.6 5.5 0.00012 39.8 5.2 34 414-447 1-51 (229)
418 PF00106 adh_short: short chai 74.6 5.5 0.00012 35.5 4.8 32 417-448 1-33 (167)
419 TIGR01316 gltA glutamate synth 74.5 4.6 9.9E-05 43.6 5.0 34 414-448 270-303 (449)
420 PRK12921 2-dehydropantoate 2-r 74.5 4.1 8.9E-05 40.7 4.4 29 417-445 1-29 (305)
421 PRK12831 putative oxidoreducta 74.5 4.2 9.2E-05 44.2 4.8 34 414-448 279-312 (464)
422 PLN02237 glyceraldehyde-3-phos 74.5 7.2 0.00016 43.0 6.5 51 417-476 76-129 (442)
423 PRK10669 putative cation:proto 74.4 4.6 9.9E-05 44.8 5.1 31 417-448 418-448 (558)
424 TIGR01505 tartro_sem_red 2-hyd 74.4 4 8.6E-05 41.1 4.3 30 418-448 1-30 (291)
425 PLN02172 flavin-containing mon 74.4 4.1 8.9E-05 44.5 4.7 34 414-448 8-41 (461)
426 PLN02712 arogenate dehydrogena 74.2 4.7 0.0001 46.3 5.2 33 415-447 51-83 (667)
427 PRK12935 acetoacetyl-CoA reduc 74.2 6.7 0.00015 37.4 5.6 35 413-447 3-38 (247)
428 PLN02686 cinnamoyl-CoA reducta 74.1 5.6 0.00012 41.5 5.5 38 411-448 48-86 (367)
429 PRK03803 murD UDP-N-acetylmura 74.1 4.2 9E-05 43.5 4.6 33 416-449 6-38 (448)
430 PRK08862 short chain dehydroge 74.1 5.4 0.00012 38.7 5.0 34 413-446 2-36 (227)
431 PRK12779 putative bifunctional 73.9 3.9 8.5E-05 48.7 4.7 34 414-448 304-337 (944)
432 PRK05808 3-hydroxybutyryl-CoA 73.9 4.4 9.6E-05 40.7 4.5 31 417-448 4-34 (282)
433 PRK12936 3-ketoacyl-(acyl-carr 73.8 6 0.00013 37.4 5.2 35 413-448 3-38 (245)
434 COG1063 Tdh Threonine dehydrog 73.8 7.8 0.00017 40.5 6.4 33 416-448 169-201 (350)
435 cd08293 PTGR2 Prostaglandin re 73.8 10 0.00023 38.1 7.1 33 416-448 155-189 (345)
436 PRK03562 glutathione-regulated 73.7 4.9 0.00011 45.6 5.2 32 416-448 400-431 (621)
437 PRK06753 hypothetical protein; 73.6 4.4 9.5E-05 41.5 4.4 32 417-449 1-32 (373)
438 cd08296 CAD_like Cinnamyl alco 73.6 10 0.00022 38.2 7.1 35 414-448 162-196 (333)
439 cd08301 alcohol_DH_plants Plan 73.6 9.8 0.00021 39.1 7.0 34 414-447 186-220 (369)
440 PRK06114 short chain dehydroge 73.5 6.2 0.00014 38.1 5.3 33 413-445 5-38 (254)
441 PRK06130 3-hydroxybutyryl-CoA 73.5 4.8 0.0001 40.9 4.6 31 417-448 5-35 (311)
442 TIGR01752 flav_long flavodoxin 73.4 8.3 0.00018 36.1 5.9 51 403-453 64-125 (167)
443 PRK12747 short chain dehydroge 73.4 6.4 0.00014 37.8 5.3 32 414-445 2-34 (252)
444 PRK11559 garR tartronate semia 73.2 5.1 0.00011 40.3 4.7 31 417-448 3-33 (296)
445 PRK12743 oxidoreductase; Provi 73.2 6.5 0.00014 38.0 5.3 32 416-447 2-34 (256)
446 PRK06701 short chain dehydroge 73.2 6 0.00013 39.7 5.2 34 412-445 42-76 (290)
447 PRK08229 2-dehydropantoate 2-r 73.1 4.6 9.9E-05 41.3 4.4 29 417-445 3-31 (341)
448 PLN02852 ferredoxin-NADP+ redu 73.1 4.5 9.7E-05 44.9 4.6 35 414-449 24-60 (491)
449 PLN02657 3,8-divinyl protochlo 73.1 6.2 0.00013 41.8 5.5 37 410-446 54-91 (390)
450 PF07992 Pyr_redox_2: Pyridine 73.1 6 0.00013 36.4 4.8 32 418-449 1-32 (201)
451 PRK00066 ldh L-lactate dehydro 73.0 5.4 0.00012 41.5 5.0 34 415-448 5-39 (315)
452 PRK06113 7-alpha-hydroxysteroi 73.0 6.2 0.00013 38.1 5.1 34 413-446 8-42 (255)
453 PF01266 DAO: FAD dependent ox 72.9 4.8 0.0001 39.8 4.4 30 419-449 2-31 (358)
454 PRK11064 wecC UDP-N-acetyl-D-m 72.9 4.5 9.8E-05 43.5 4.5 31 417-448 4-34 (415)
455 COG0644 FixC Dehydrogenases (f 72.9 4.7 0.0001 42.5 4.6 46 417-463 4-53 (396)
456 TIGR01279 DPOR_bchN light-inde 72.8 7 0.00015 41.9 5.9 44 406-449 264-307 (407)
457 PRK08690 enoyl-(acyl carrier p 72.8 5.5 0.00012 39.1 4.7 31 414-444 4-37 (261)
458 PRK08177 short chain dehydroge 72.7 5.6 0.00012 37.7 4.7 30 417-446 2-32 (225)
459 TIGR01963 PHB_DH 3-hydroxybuty 72.6 5.6 0.00012 37.8 4.7 31 416-446 1-32 (255)
460 PRK14804 ornithine carbamoyltr 72.6 27 0.00059 36.5 10.0 63 380-445 119-183 (311)
461 PRK07454 short chain dehydroge 72.5 6.3 0.00014 37.5 5.0 32 415-446 5-37 (241)
462 PRK09291 short chain dehydroge 72.4 6.2 0.00013 37.8 4.9 32 416-447 2-34 (257)
463 PRK07530 3-hydroxybutyryl-CoA 72.4 5.4 0.00012 40.2 4.7 31 417-448 5-35 (292)
464 PRK07729 glyceraldehyde-3-phos 72.3 7.9 0.00017 41.3 6.0 51 417-476 3-54 (343)
465 TIGR03026 NDP-sugDHase nucleot 72.3 4.4 9.5E-05 43.2 4.2 31 417-448 1-31 (411)
466 PRK07097 gluconate 5-dehydroge 72.3 6.6 0.00014 38.2 5.2 36 412-448 6-42 (265)
467 PRK13303 L-aspartate dehydroge 72.3 5.2 0.00011 40.4 4.6 32 417-448 2-34 (265)
468 PRK08300 acetaldehyde dehydrog 72.2 6.1 0.00013 41.4 5.1 34 415-448 3-37 (302)
469 PLN02740 Alcohol dehydrogenase 72.2 8.7 0.00019 40.0 6.3 33 414-446 197-230 (381)
470 PRK09134 short chain dehydroge 72.1 8 0.00017 37.4 5.7 35 413-447 6-41 (258)
471 KOG0455 Homoserine dehydrogena 72.1 4.5 9.8E-05 42.0 4.0 42 416-457 3-53 (364)
472 PRK07679 pyrroline-5-carboxyla 72.0 6.5 0.00014 39.5 5.2 33 415-448 2-38 (279)
473 PRK05708 2-dehydropantoate 2-r 72.0 4.9 0.00011 41.2 4.3 31 417-447 3-33 (305)
474 PRK07985 oxidoreductase; Provi 72.0 6 0.00013 39.8 4.9 33 413-445 46-79 (294)
475 TIGR02822 adh_fam_2 zinc-bindi 71.9 9.6 0.00021 38.9 6.4 32 415-446 165-196 (329)
476 PTZ00117 malate dehydrogenase; 71.8 6.1 0.00013 41.1 5.0 35 414-449 3-38 (319)
477 PRK06847 hypothetical protein; 71.7 5.3 0.00011 40.9 4.5 32 416-448 4-35 (375)
478 cd01979 Pchlide_reductase_N Pc 71.6 6.7 0.00014 41.8 5.4 43 405-447 265-307 (396)
479 PRK11891 aspartate carbamoyltr 71.5 19 0.00041 39.6 8.9 92 354-445 169-274 (429)
480 CHL00194 ycf39 Ycf39; Provisio 71.5 6 0.00013 40.1 4.8 31 417-447 1-32 (317)
481 PLN02572 UDP-sulfoquinovose sy 71.4 5.8 0.00013 42.8 5.0 35 412-446 43-78 (442)
482 PRK06603 enoyl-(acyl carrier p 71.3 6.4 0.00014 38.6 4.8 33 413-445 5-40 (260)
483 PRK07424 bifunctional sterol d 71.3 6.5 0.00014 42.5 5.3 35 412-446 174-209 (406)
484 PRK09853 putative selenate red 71.2 4.9 0.00011 48.4 4.6 34 414-448 537-570 (1019)
485 PRK06139 short chain dehydroge 71.2 6.9 0.00015 40.5 5.3 35 412-446 3-38 (330)
486 COG0654 UbiH 2-polyprenyl-6-me 71.2 6.2 0.00013 41.3 5.0 32 417-449 3-34 (387)
487 TIGR03649 ergot_EASG ergot alk 71.2 4.7 0.0001 39.7 3.9 30 418-447 1-31 (285)
488 cd08243 quinone_oxidoreductase 71.1 14 0.00031 36.0 7.2 39 410-448 137-176 (320)
489 KOG0089 Methylenetetrahydrofol 71.1 5 0.00011 41.9 4.1 57 393-453 147-204 (309)
490 PRK08293 3-hydroxybutyryl-CoA 71.1 6 0.00013 40.0 4.7 31 417-448 4-34 (287)
491 PTZ00353 glycosomal glyceralde 71.1 10 0.00022 40.5 6.4 52 417-476 3-55 (342)
492 PRK08849 2-octaprenyl-3-methyl 70.9 6 0.00013 41.2 4.8 32 417-449 4-35 (384)
493 cd08298 CAD2 Cinnamyl alcohol 70.9 12 0.00026 37.4 6.7 37 412-448 164-200 (329)
494 PLN02989 cinnamyl-alcohol dehy 70.9 6.9 0.00015 39.3 5.0 31 415-445 4-35 (325)
495 TIGR01316 gltA glutamate synth 70.8 5.7 0.00012 42.8 4.7 34 414-448 131-164 (449)
496 TIGR00521 coaBC_dfp phosphopan 70.8 10 0.00022 40.9 6.6 37 412-448 181-234 (390)
497 PRK07494 2-octaprenyl-6-methox 70.8 5.8 0.00013 41.0 4.6 32 417-449 8-39 (388)
498 PRK08643 acetoin reductase; Va 70.6 7.3 0.00016 37.5 5.0 31 416-446 2-33 (256)
499 TIGR00872 gnd_rel 6-phosphoglu 70.6 6.1 0.00013 40.3 4.7 31 417-448 1-31 (298)
500 PRK03659 glutathione-regulated 70.6 6.2 0.00013 44.5 5.1 31 417-448 401-431 (601)
No 1
>PTZ00079 NADP-specific glutamate dehydrogenase; Provisional
Probab=100.00 E-value=5e-102 Score=817.42 Aligned_cols=319 Identities=50% Similarity=0.952 Sum_probs=311.2
Q ss_pred hhHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCCccHHHHHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEecC
Q 010384 191 KTAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~p~~~ef~qav~e~~~~~~~~l~~~p~y~~i~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~ 270 (512)
..++++++.+.+++|+|+||+|+|+|+++++.|+|+++|+|.+++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 12 ~~~~~~~~~~~~~~~~~~ef~qa~~e~~~~~~~~~~~~~~y~~i~e~l~~Per~i~~~vp~~~D~G~v~v~~GyRVqhn~ 91 (454)
T PTZ00079 12 QEMDALRKRVKSRDPNQPEFLQAFHEVMTSLKPLFQKNPKYLGVLERLVEPERVIQFRVPWVDDKGEQRVNRGFRVQYNS 91 (454)
T ss_pred HHHHHHHHHHHHhCCCChHHHHHHHHHHHHHHHHHHhChhHHHHHHHhccCceEEEEEEEEEECCCCEEEEeeEEEEEcC
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 010384 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (512)
Q Consensus 271 alGPaKGGiRfhp~V~ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVPA 350 (512)
++|||||||||||+||++|+++||++|||||||++||||||||||+|||+++|+.|+|||||+||++|.+||||++||||
T Consensus 92 alGP~kGGlRfhp~v~~~~vk~La~~mt~KnAl~gLP~GGgKGGi~~dPk~~s~~El~r~~r~f~~eL~~~IGp~~DvpA 171 (454)
T PTZ00079 92 ALGPYKGGLRFHPSVNLSILKFLGFEQIFKNSLTTLPMGGGKGGSDFDPKGKSDNEVMRFCQSFMTELYRHIGPDTDVPA 171 (454)
T ss_pred CCCCCCCCEEeeCCCCHHHHHHHHHHHHHHHHhcCCCCCCcceeeecCCCCCCHHHHHHHHHHHHHHHHHhcCCCCccch
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHH
Q 010384 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (512)
Q Consensus 351 pDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~ 430 (512)
|||||+++||+||+|+|++++++++|++||||+.+|||.+|++||||||+|++++++++++.+|+|+||+||||||||++
T Consensus 172 ~DvGt~~rem~~~~~~y~~~~~~~~gv~TGK~~~~GGs~~r~eATG~Gv~~~~~~~l~~~~~~l~Gk~VaVqG~GnVg~~ 251 (454)
T PTZ00079 172 GDIGVGGREIGYLFGQYKKLRNNFEGTLTGKNVKWGGSNIRPEATGYGLVYFVLEVLKKLNDSLEGKTVVVSGSGNVAQY 251 (454)
T ss_pred hhcCCCHHHHHHHHHHHHHHhCCCCceeCCCCCCCCCCCCCCcccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhc-CccccccccCCCcEEeCCCCccccch--hccccccc
Q 010384 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRFK 507 (512)
Q Consensus 431 aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~-G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~ 507 (512)
+|++|++.|+|||||||++|+||||+|||+++|..|+++|+.+ ++|.+|.+.++++++++++++|+++| ++|||+++
T Consensus 252 aa~~L~e~GakVVavSD~~G~iy~~~Gld~~~l~~l~~~k~~~~g~i~~~~~~~~~a~~~~~~~~~~~~cDI~iPcA~~n 331 (454)
T PTZ00079 252 AVEKLLQLGAKVLTMSDSDGYIHEPNGFTKEKLAYLMDLKNVKRGRLKEYAKHSSTAKYVPGKKPWEVPCDIAFPCATQN 331 (454)
T ss_pred HHHHHHHCCCEEEEEEcCCCcEECCCCCCHHHHHHHHHHHhhcCCcHHhhhhccCCcEEeCCcCcccCCccEEEeccccc
Confidence 9999999999999999999999999999999998899999876 78999977678899999999999999 99999999
Q ss_pred cc
Q 010384 508 YA 509 (512)
Q Consensus 508 ~~ 509 (512)
.+
T Consensus 332 ~I 333 (454)
T PTZ00079 332 EI 333 (454)
T ss_pred cC
Confidence 75
No 2
>PRK14030 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.7e-98 Score=790.53 Aligned_cols=317 Identities=43% Similarity=0.856 Sum_probs=307.2
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCCccHH--HHHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEecC
Q 010384 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (512)
Q Consensus 193 ~~~~~~~~~~~~p~~~ef~qav~e~~~~~~~~l~~~p~y~~--i~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~ 270 (512)
++++++.+.+++|+|+||+|++++++++++++++.+|.|.. ++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~e~eF~~~~~~~~~~~~~~l~~~~~y~~~~~~~~l~~p~r~i~~~vp~~~d~G~~~~~~GyRvqhn~ 82 (445)
T PRK14030 3 IEKIMTSLEAKHPGESEYLQAVKEVLLSVEDVYNQHPEFEKAKIIERIVEPDRIFTFRVPWVDDKGEVQVNLGYRVQFNN 82 (445)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHccChhhhhhHHHHHhhcCcEEEEEEEEEEECCCcEEEEeeEEEEecC
Confidence 45788899999999999999999999999999999999985 9999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 010384 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (512)
Q Consensus 271 alGPaKGGiRfhp~V~ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVPA 350 (512)
++|||||||||||+||++|+++||+||||||||++||||||||||++||+.+|+.|||||||+|+++|.+||||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~DIpA 162 (445)
T PRK14030 83 AIGPYKGGIRFHPSVNLSILKFLGFEQTFKNALTTLPMGGGKGGSDFSPRGKSDAEIMRFCQAFMLELWRHIGPDTDVPA 162 (445)
T ss_pred cccCCCCcEEecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeecCCCccCCHHHHHHHHHHHHHHHHHhcCCCCCccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHH
Q 010384 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (512)
Q Consensus 351 pDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~ 430 (512)
|||||+++||+||+|+|+++.++++++|||||+.+|||.+|++||||||+++++++++++|.+|+|+||+||||||||++
T Consensus 163 pDvgt~~~~M~w~~d~y~~~~~~~~g~vTGkp~~~gGs~gr~~ATg~Gv~~~~~~~~~~~g~~l~g~~vaIQGfGnVG~~ 242 (445)
T PRK14030 163 GDIGVGGREVGYMFGMYKKLTREFTGTLTGKGLEFGGSLIRPEATGFGALYFVHQMLETKGIDIKGKTVAISGFGNVAWG 242 (445)
T ss_pred cccCCCHHHHHHHHHHHHhccCccccEEEccccccCCCCCCCCccHHHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc-ccccccCCCcEEeCCCCccccch--hccccccc
Q 010384 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL-RDYSKTYARSKYYDEAKPWNERL--SYTCRRFK 507 (512)
Q Consensus 431 aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l-~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~ 507 (512)
+|++|++.|||||+|||++|+||||+|||++++..|+++|++++++ ..|.+.||++++++++++|+++| ++|||+++
T Consensus 243 aA~~L~e~GakvVavSD~~G~i~d~~Gld~~~l~~l~~~k~~~~~~~~~~~~~~~ga~~i~~~~~~~~~cDVliPcAl~n 322 (445)
T PRK14030 243 AATKATELGAKVVTISGPDGYIYDPDGISGEKIDYMLELRASGNDIVAPYAEKFPGSTFFAGKKPWEQKVDIALPCATQN 322 (445)
T ss_pred HHHHHHHCCCEEEEEEcCCceEECCCCCCHHHHHHHHHHHHhcCccHHHHHhcCCCCEEcCCccceeccccEEeeccccc
Confidence 9999999999999999999999999999999988889999998876 45556778999999999999999 99999999
Q ss_pred cc
Q 010384 508 YA 509 (512)
Q Consensus 508 ~~ 509 (512)
++
T Consensus 323 ~I 324 (445)
T PRK14030 323 EL 324 (445)
T ss_pred cC
Confidence 76
No 3
>PRK14031 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.1e-96 Score=777.07 Aligned_cols=316 Identities=43% Similarity=0.836 Sum_probs=304.7
Q ss_pred HHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCCccH--HHHHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEecC
Q 010384 193 AGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYV--NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQ 270 (512)
Q Consensus 193 ~~~~~~~~~~~~p~~~ef~qav~e~~~~~~~~l~~~p~y~--~i~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~ 270 (512)
++++++.+++++|+|+||+|+++|++++++|+++++|+|. +++++|++|+|+|+|+|||+||+|++++|+|||||||+
T Consensus 3 ~~~~~~~~~~~~~~~~e~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~p~r~~~~~~p~~~d~g~~~~~~gyRvqhn~ 82 (444)
T PRK14031 3 AAKVLEDLKRRFPNEPEYHQAVEEVLSTIEEEYNKHPEFDKANLIERLCIPDRVYQFRVTWVDDKGNVQTNMGYRVQHNN 82 (444)
T ss_pred HHHHHHHHHHhCcCChHHHHHHHHHHHHHHHHHHhChhhhhhhHHHHhhcCceEEEEEEEEEECCCCEEEEeeEEEEecC
Confidence 4678999999999999999999999999999999999996 59999999999999999999999999999999999999
Q ss_pred CCCCCCCCeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCC
Q 010384 271 ALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPS 350 (512)
Q Consensus 271 alGPaKGGiRfhp~V~ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVPA 350 (512)
++||+||||||||++|++|+++||+||||||||++||||||||||++||+++|+.|||||||+|+++|.++|||++||||
T Consensus 83 ~lGP~kGGiR~~p~v~~~~v~aLa~~MT~K~Al~~lP~GGgKggi~~dP~~~s~~Eler~~r~f~~~L~~~iGp~~dipA 162 (444)
T PRK14031 83 AIGPYKGGIRFHASVNLGILKFLAFEQTFKNSLTTLPMGGGKGGSDFSPRGKSNAEVMRFCQAFMLELWRHIGPETDVPA 162 (444)
T ss_pred CCcCCCCCeeecCCCCHHHHHHHHHHHHHHHHHcCCCCCCceeeeeCCCCCCCHHHHHHHHHHHHHHHHhccCCCCccCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHH
Q 010384 351 EEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMH 430 (512)
Q Consensus 351 pDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~ 430 (512)
|||||+++||+||+|+|++++++..|++||||+.+|||.+|++||||||+++++++++++|.+|+|+||+||||||||++
T Consensus 163 pDvgt~~~~M~~i~d~y~~~~~~~~g~~tgkp~~~GGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~rVaVQGfGNVG~~ 242 (444)
T PRK14031 163 GDIGVGGREVGFMFGMYKKLSHEFTGTFTGKGREFGGSLIRPEATGYGNIYFLMEMLKTKGTDLKGKVCLVSGSGNVAQY 242 (444)
T ss_pred cccCCCHHHHHHHHHHHHhhcCCcceEECCCccccCCCCCCCcccHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHH
Confidence 99999999999999999999998899999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHh-cCccccccccCCCcEEeCCCCccccch--hccccccc
Q 010384 431 VLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ-QRSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRFK 507 (512)
Q Consensus 431 aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~-~G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~ 507 (512)
+|++|++.||+||+|||++|+||||+|||+++|..+.++|+. ++++.+|...+ ++++++++++|+++| ++|||+++
T Consensus 243 aA~~L~e~GAkVVaVSD~~G~iy~~~Gld~~~l~~~~~~k~~~~~~v~~~~~~~-ga~~i~~d~~~~~~cDIliPaAl~n 321 (444)
T PRK14031 243 TAEKVLELGGKVVTMSDSDGYIYDPDGIDREKLDYIMELKNLYRGRIREYAEKY-GCKYVEGARPWGEKGDIALPSATQN 321 (444)
T ss_pred HHHHHHHCCCEEEEEECCCCeEECCCCCCHHHHHHHHHHHhhcCCchhhhHhhc-CCEEcCCcccccCCCcEEeeccccc
Confidence 999999999999999999999999999999998767788876 67888886544 689999999999999 99999999
Q ss_pred cc
Q 010384 508 YA 509 (512)
Q Consensus 508 ~~ 509 (512)
++
T Consensus 322 ~I 323 (444)
T PRK14031 322 EL 323 (444)
T ss_pred cc
Confidence 54
No 4
>COG0334 GdhA Glutamate dehydrogenase/leucine dehydrogenase [Amino acid transport and metabolism]
Probab=100.00 E-value=1.7e-92 Score=734.14 Aligned_cols=292 Identities=39% Similarity=0.633 Sum_probs=277.6
Q ss_pred CccHHHHHHHHHHHHHHHHHhCCccHHHHHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEecCCCCCCCCCeEEecCCC
Q 010384 207 EIEFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMN 286 (512)
Q Consensus 207 ~~ef~qav~e~~~~~~~~l~~~p~y~~i~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~alGPaKGGiRfhp~V~ 286 (512)
+++|.|++.++.+++.+. ...+ .++++|++|+|+++|++||+||+|++++|+|||||||+++|||||||||||+||
T Consensus 1 ~~~~~~a~~~~~~~~~~~-~~~~---~~~e~l~~p~r~i~~~i~v~~d~g~~~~~~g~rvqhn~a~GP~kGGiRfhP~v~ 76 (411)
T COG0334 1 ENEFEQAVKELEKALEPL-YLDE---GVLERLKEPERVIQVRIPVRMDDGSVKVFRGYRVQHNSALGPYKGGVRFHPYVT 76 (411)
T ss_pred CcHHHHHHHHHHHhhhhc-cCch---hHHHHhcCceeEEEEEEEEEEcCCcEeeeEEEEEEecCCcCCccCceecCCCCC
Confidence 467999999998888773 2222 499999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhhcCCCCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHH
Q 010384 287 LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQ 366 (512)
Q Consensus 287 ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~ 366 (512)
++||++||+||||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++|||||||||++++|+||+|+
T Consensus 77 ~~ev~~Ls~~MT~Knal~~Lp~GGGKGgi~~DPk~~S~~E~erl~raf~~~i~~~iGp~~dIpApDvgt~~~~m~wm~de 156 (411)
T COG0334 77 LEEVKALSFWMTLKNALAGLPYGGGKGGIIVDPKGLSDGELERLSRAFGRAIYRLIGPDTDIPAPDVGTNPQDMAWMMDE 156 (411)
T ss_pred HHHHHHHHHHHHHHHHHhCCCCCCCceeeeCCcccCCHHHHHHHHHHHHHHHHHhcCCCcEecccccCCCHHHHHHHHHh
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HhhHhCCC-CcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEE
Q 010384 367 YRRLAGHF-QGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 367 Y~~~~g~~-~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaV 445 (512)
|+++.|.. .|++||||+++|||.+|++||||||+++++++++.++.+|+|+||+||||||||+++|++|++.|||||++
T Consensus 157 y~~i~g~~~~gv~TGKp~~~GGS~~r~~aTg~Gv~~~~~~a~~~~g~~l~G~rVaVQG~GNVg~~aa~~l~~~GAkvva~ 236 (411)
T COG0334 157 YSKIVGNSAPGVFTGKPLELGGSLGRSEATGYGVFYAIREALKALGDDLEGARVAVQGFGNVGQYAAEKLHELGAKVVAV 236 (411)
T ss_pred hhhhcCCCCcceecCCcccccCCCCCCcccceehHHHHHHHHHHcCCCcCCCEEEEECccHHHHHHHHHHHHcCCEEEEE
Confidence 99999876 69999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred eCCCceeeCCCCCCHhhHHHHHHHHHhcCccccccccCCCcEEeCCCCccccch--hccccccccc
Q 010384 446 SDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 446 SDs~G~Iydp~GLDie~L~~L~e~K~~~G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~~~ 509 (512)
||++|+|||++|||+++| ++.|++.+++.+| +++++++++++|+++| |+|||++|.+
T Consensus 237 sds~g~i~~~~Gld~~~l---~~~~~~~~~v~~~----~ga~~i~~~e~~~~~cDIl~PcA~~n~I 295 (411)
T COG0334 237 SDSKGGIYDEDGLDVEAL---LELKERRGSVAEY----AGAEYITNEELLEVDCDILIPCALENVI 295 (411)
T ss_pred EcCCCceecCCCCCHHHH---HHHhhhhhhHHhh----cCceEccccccccccCcEEccccccccc
Confidence 999999999999999997 4777777888876 5799999999999999 9999999986
No 5
>PRK09414 glutamate dehydrogenase; Provisional
Probab=100.00 E-value=1.9e-91 Score=738.21 Aligned_cols=314 Identities=52% Similarity=0.940 Sum_probs=303.0
Q ss_pred hHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHhCCccHH--HHHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEec
Q 010384 192 TAGSIVEAALKRDPHEIEFIQSVQESLHALERVIAKNSHYVN--IMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFS 269 (512)
Q Consensus 192 ~~~~~~~~~~~~~p~~~ef~qav~e~~~~~~~~l~~~p~y~~--i~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs 269 (512)
.++++++++.+++|+|+||+|++++++++++++++.+|.|.. ++++|++|+|+|+|+|||+||+|++++|+|||||||
T Consensus 6 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~a~~~l~~~~~~~~~~~~~~l~~p~r~i~v~~pv~~d~g~~~~~~gyRv~h~ 85 (445)
T PRK09414 6 YLESVLEQVKKRNPGQPEFHQAVREVLESLWPVLEKNPEYAEAGILERLVEPERVIIFRVPWVDDKGQVQVNRGFRVQFN 85 (445)
T ss_pred HHHHHHHHHHhhCcCCchHHHHHHHHHHHHHHHhccChhhhhhhHHHHhcCCceEEEEEEEEEECCCcEEEEeeeEEEec
Confidence 567899999999999999999999999999999999999885 999999999999999999999999999999999999
Q ss_pred CCCCCCCCCeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCC
Q 010384 270 QALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLP 349 (512)
Q Consensus 270 ~alGPaKGGiRfhp~V~ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVP 349 (512)
+++||+||||||||+++++|+++||+||||||||++||||||||||++||+.+|+.|||||||+|+++|.+++||+.|||
T Consensus 86 ~~~GPakGG~R~~p~v~~~ev~aLA~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~Eler~~r~~~~~l~~~iG~~~Dip 165 (445)
T PRK09414 86 SAIGPYKGGLRFHPSVNLSILKFLGFEQIFKNALTGLPIGGGKGGSDFDPKGKSDAEIMRFCQSFMTELYRHIGPDTDVP 165 (445)
T ss_pred CCCcCCCCceeecCCCCHHHHHHHHHHHHHHHHhcCCCCCCceeeeecCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcC
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHH
Q 010384 350 SEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAM 429 (512)
Q Consensus 350 ApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~ 429 (512)
||||||+++||+||+|+|++++++..|++||||+.+|||.+|.+||||||++++++++++++.+++|+||+||||||||+
T Consensus 166 apDvgt~~~~M~~~~d~y~~~~~~~~g~vtGkp~~~gGs~gr~~aTg~Gv~~~~~~~~~~~~~~l~g~rVaIqGfGnVG~ 245 (445)
T PRK09414 166 AGDIGVGGREIGYLFGQYKRLTNRFEGVLTGKGLSFGGSLIRTEATGYGLVYFAEEMLKARGDSFEGKRVVVSGSGNVAI 245 (445)
T ss_pred ccccCCCHHHHHHHHHHHHhhcCcceEEEecCCcccCCCCCCCCcccHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHH
Confidence 99999999999999999999999888999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhc-CccccccccCCCcEEeCCCCccccch--hcccccc
Q 010384 430 HVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ-RSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRF 506 (512)
Q Consensus 430 ~aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~-G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~ 506 (512)
++|++|.+.|+|||+|||++|+||||+|||+++| +++|+++ +++.+|++.+ ++++++++++|+++| |+|||++
T Consensus 246 ~~A~~L~~~GakVVavsDs~G~iyn~~GLD~~~L---~~~k~~~~~~l~~~~~~~-~~~~i~~~~i~~~d~DVliPaAl~ 321 (445)
T PRK09414 246 YAIEKAQQLGAKVVTCSDSSGYVYDEEGIDLEKL---KEIKEVRRGRISEYAEEF-GAEYLEGGSPWSVPCDIALPCATQ 321 (445)
T ss_pred HHHHHHHHCCCEEEEEEcCCceEECCCCCCHHHH---HHHHHhcCCchhhhhhhc-CCeecCCccccccCCcEEEecCCc
Confidence 9999999999999999999999999999999885 8888876 5788885443 688999999999999 9999999
Q ss_pred ccc
Q 010384 507 KYA 509 (512)
Q Consensus 507 ~~~ 509 (512)
+++
T Consensus 322 n~I 324 (445)
T PRK09414 322 NEL 324 (445)
T ss_pred CcC
Confidence 976
No 6
>PLN02477 glutamate dehydrogenase
Probab=100.00 E-value=2.8e-89 Score=716.05 Aligned_cols=291 Identities=27% Similarity=0.436 Sum_probs=282.9
Q ss_pred cHHHHHHHHHHHHHHHHHhCCccHHHHHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEecCCCCCCCCCeEEecCCCHH
Q 010384 209 EFIQSVQESLHALERVIAKNSHYVNIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLS 288 (512)
Q Consensus 209 ef~qav~e~~~~~~~~l~~~p~y~~i~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~alGPaKGGiRfhp~V~ld 288 (512)
.+++.++++++.++++++.+|. ++++|++|+|+++|+|||+||+|++++|+|||||||+++||+||||||||++|++
T Consensus 2 ~~~~~~~~~~~~a~~~~~~~~~---~~~~l~~p~r~~~v~~p~~~d~g~~~~~~gyRvqh~~~~GP~kGGiR~~p~v~~~ 78 (410)
T PLN02477 2 NALAATNRNFREAARLLGLDSK---LEKSLLIPFREIKVECTIPKDDGTLASFVGFRVQHDNARGPMKGGIRYHPEVDPD 78 (410)
T ss_pred CHHHHHHHHHHHHHHHcCCCHH---HHHHHhcCceEEEEEEEEEECCCcEEEeeeeEeeecCccCCCCCCeeecCCCCHH
Confidence 3688999999999999999996 9999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHhhcCCCCCCceeEecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHh
Q 010384 289 IAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYR 368 (512)
Q Consensus 289 EvkaLA~~MT~KnALagLP~GGaKGGI~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~ 368 (512)
||++||+||||||||++||||||||||++||+.+|+.|+|||||+|+++|.++|||++|||||||||+++||+||+|+|+
T Consensus 79 ev~~La~~MT~K~Al~~lP~GGgKggI~~dP~~~s~~e~e~l~r~f~~~l~~~iG~~~DipapDvgt~~~~M~w~~d~y~ 158 (410)
T PLN02477 79 EVNALAQLMTWKTAVANIPYGGAKGGIGCDPRDLSESELERLTRVFTQKIHDLIGIHTDVPAPDMGTNAQTMAWILDEYS 158 (410)
T ss_pred HHHHHHHHHHHHHHhcCCCCcCceeeeccCCccCCHHHHHHHHHHHHHHHHHhcCCCCCcccCCCCCCHHHHHHHHHHHH
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred hHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 369 RLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 369 ~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++.|+++++|||||+.+|||.+|++||||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||||||+
T Consensus 159 ~~~g~~~~~vtGkp~~~gGs~~r~~aTg~Gv~~~~~~~~~~~g~~l~g~~VaIqGfGnVG~~~A~~L~e~GakVVaVsD~ 238 (410)
T PLN02477 159 KFHGFSPAVVTGKPIDLGGSLGREAATGRGVVFATEALLAEHGKSIAGQTFVIQGFGNVGSWAAQLIHEKGGKIVAVSDI 238 (410)
T ss_pred HhhCCCCceEeCCCcccCCCCCCCccchHHHHHHHHHHHHHcCCCccCCEEEEECCCHHHHHHHHHHHHcCCEEEEEECC
Confidence 99999899999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CceeeCCCCCCHhhHHHHHHHHHhcCccccccccCCCcEEeCCCCccccch--hccccccccc
Q 010384 449 KGYLVDEDGFDYMKISFLRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 449 ~G~Iydp~GLDie~L~~L~e~K~~~G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~~~ 509 (512)
+|+||||+|||+++| +++|++++++.+| |+++.++++++|.++| |+|||+++++
T Consensus 239 ~G~iy~~~GLD~~~L---~~~k~~~g~l~~~----~~a~~i~~~e~l~~~~DvliP~Al~~~I 294 (410)
T PLN02477 239 TGAVKNENGLDIPAL---RKHVAEGGGLKGF----PGGDPIDPDDILVEPCDVLIPAALGGVI 294 (410)
T ss_pred CCeEECCCCCCHHHH---HHHHHhcCchhcc----ccceEecCccceeccccEEeeccccccC
Confidence 999999999999875 8999988988776 6899999999999999 9999999975
No 7
>KOG2250 consensus Glutamate/leucine/phenylalanine/valine dehydrogenases [Amino acid transport and metabolism]
Probab=100.00 E-value=3.6e-88 Score=707.71 Aligned_cols=333 Identities=41% Similarity=0.662 Sum_probs=312.8
Q ss_pred hhhhhhHHHHHHhhhcccccccccCchhHHHHHHhhHHHHHHHHhhcCCCCccHHHHHHHHHHH--HHHHHHhCCccHHH
Q 010384 157 HNNSLLHKEALRLQMASKDKIIADKPIYVKALMSKTAGSIVEAALKRDPHEIEFIQSVQESLHA--LERVIAKNSHYVNI 234 (512)
Q Consensus 157 h~~s~~hk~al~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~p~~~ef~qav~e~~~~--~~~~l~~~p~y~~i 234 (512)
|.++++|++|++++.+++++ .+.|.|++++++.. ++.+++|.|+..|.+.+ ....++++|.|..+
T Consensus 1 ~~~~~~~~~~~~~~~~~k~~--~~~p~~~~~v~~~~-----------~~~~~~~~~~~~e~v~~~e~~~~fek~~~~~~I 67 (514)
T KOG2250|consen 1 HTLFLLFAAAHQYHNSTKDM--ADSPTFLKMVESMY-----------APAAIEFQQALAEDVLSLELSSKFEKSPLYTAI 67 (514)
T ss_pred CchHHHHHHHHHhhhccccc--ccChHHHHHHHhhc-----------cccchhhhhhhHHHHhcchhhhhhhhhhHhhhh
Confidence 56789999999999999998 89999999886632 38889999999999999 68899999999999
Q ss_pred HHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEecCCCCCCCCCeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeE
Q 010384 235 MERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGG 314 (512)
Q Consensus 235 ~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~alGPaKGGiRfhp~V~ldEvkaLA~~MT~KnALagLP~GGaKGG 314 (512)
+.+|..|+|+++|++||.+|+|+.+|+.||||||+.++||+||||||||+||+|++++||+.||||||++++||||||||
T Consensus 68 l~~l~p~~~~i~~~~p~~~d~G~~~V~~gfRvqh~~argP~KGGIR~hpsvn~d~~k~La~~~t~K~A~tdiP~GGaKGG 147 (514)
T KOG2250|consen 68 LFRLDPPERVIKFRVPIPRDDGEFEVINGFRVQHNRARGPAKGGIRYHPSVNLDIVKALAFLMTYKNALTDIPYGGAKGG 147 (514)
T ss_pred hhhcCccceeEEEEeceecCCceEEEeechhhhhhhccCcccCceEeCCcCCHHHHHHHHHHHHHHhhccCCCCCCCcCc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred ecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCC
Q 010384 315 SDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEA 394 (512)
Q Consensus 315 I~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eA 394 (512)
|++||+++|+.|+||+||+||++|.++|||++|||||||||+++||+||+++|+++.|++.+||||||+.+|||++|.+|
T Consensus 148 i~~dPk~~s~nEi~r~~~~f~~el~~~iGp~~DvPapdig~G~rEm~~if~~Ya~~~g~~~a~vTGK~i~~GGs~~R~~A 227 (514)
T KOG2250|consen 148 ILIDPKGKSDNEIERITRRFTDELIDIIGPDTDVPAPDIGTGPREMGWIFDEYAKTHGHWKAVVTGKPISLGGSHGRYEA 227 (514)
T ss_pred cccCccccchHHHHHHHHHHHHHHHHHcCCCCCCCccccccCcchhhhhHHHHHHhhcccceeeeCCCCccCCccCcccc
Confidence 99999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred chhHHHHHHHHHHHHcC--CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHh
Q 010384 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQ 472 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg--~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~ 472 (512)
|||||+++++.++++++ .+++|+||+||||||||++++++|++.|++||||||++|+|+||+|||+++| .+++.+
T Consensus 228 TG~GV~~y~e~~~~~~~~~~~~kgkr~~i~G~Gnv~~~aa~~l~~~G~kvvavsD~~G~l~np~Gid~~eL---~~~~~~ 304 (514)
T KOG2250|consen 228 TGRGVVYYVEAILNDANGKKGIKGKRVVIQGFGNVGGHAAKKLSEKGAKVVAVSDSKGVLINPDGIDIEEL---LDLADE 304 (514)
T ss_pred cchhHHHHHHHHHHhccCCCCcCceEEEEeCCCchHHHHHHHHHhcCCEEEEEEcCceeEECCCCCCHHHH---HHHHHh
Confidence 99999999999999998 8999999999999999999999999999999999999999999999999886 788888
Q ss_pred cCccccccccCCCcEEeCCC-------Cccccch--hccccccccc
Q 010384 473 QRSLRDYSKTYARSKYYDEA-------KPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 473 ~G~l~~y~~~~pgA~~i~~~-------~i~~~~c--l~PcAt~~~~ 509 (512)
++++++| ++++...+. .+|..+| |+|||++|.+
T Consensus 305 k~~i~~f----~~~~~~~~~~~~~~~~~~~v~~~DI~vPCA~qn~I 346 (514)
T KOG2250|consen 305 KKTIKSF----DGAKLSYEGYIAGLPPWTLVEKCDILVPCATQNEI 346 (514)
T ss_pred hcccccc----ccccccCccccccCcchhhHhhCcEEeecCccCcc
Confidence 8888776 344432222 5666788 9999999865
No 8
>PTZ00324 glutamate dehydrogenase 2; Provisional
Probab=100.00 E-value=6.2e-50 Score=449.79 Aligned_cols=259 Identities=16% Similarity=0.185 Sum_probs=232.4
Q ss_pred HHHHHhcCCceEEEEEEeeEcCCCceEEEEEEEEEecCCCCCCCCCeEEecC-----------CCHHHHHHHHHHHHHHH
Q 010384 233 NIMERLLEPERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPS-----------MNLSIAKFLGFEQTLKN 301 (512)
Q Consensus 233 ~i~e~L~~PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~alGPaKGGiRfhp~-----------V~ldEvkaLA~~MT~Kn 301 (512)
.+++.|..|++.+.+.+|+ | ..|+|||+||+.+ +||||||||+ ++++|+++||++||+||
T Consensus 464 ~~l~~l~~P~~p~~v~fv~----G--~~f~G~hvR~~di---ARGGiR~~~s~~~edy~tn~~~~~dEv~~LA~tqt~KN 534 (1002)
T PTZ00324 464 SFLSELEYPRVPYGVFLVA----G--AQFRGFHIRFTDI---ARGGVRMIQSFKEQAYRRNKRSVFDENYNLASTQLLKN 534 (1002)
T ss_pred HHHhhcCCCCceEEEEEEE----C--CcEEEEEEecCCc---ccceeEEecCcchhhhhhcccCcHHHHHHHHHHHHHhc
Confidence 4788999999999999998 5 7899999999998 9999999998 88999999999999999
Q ss_pred hhcCCCCCCceeEecCCCCCCCH---HHHHHHHHHHHHHHHHhcCCCCCC-----------CCCCCCCChhhHHHHHHHH
Q 010384 302 ALSPYKLGGAAGGSDFDPKGKSD---NEIMRFCQSFMNEIHRYLGPDKDL-----------PSEEMGVGTREMGYLFGQY 367 (512)
Q Consensus 302 ALagLP~GGaKGGI~~DPk~~S~---~EleR~~r~f~~eL~~~IGp~~DV-----------PApDvGT~~reMawm~d~Y 367 (512)
| +||+|||||||.+||+.+++ .|++|++|+|+++|..+|||+.|| ||||+||+++.|+|| ++|
T Consensus 535 a--dIP~GGaKGgi~vdp~~~~~~~~~e~er~~r~yi~aLlDli~p~~dIVd~~~~de~l~~aPD~ntta~~mdwa-~~~ 611 (1002)
T PTZ00324 535 K--DIPEGGSKGTILLSSRYLNKFAQVRCQHAFLQYIDALLDVMLPGEKVVDHLKQEEIIFLGPDEHTTGTLMDWA-ALH 611 (1002)
T ss_pred C--CCCCCCCeEEEEeCCcccchhhHHHHHHHHHHHHHHHHHhcCCCcccccccCCccccccCCCCCCCHHHHHHH-HHH
Confidence 8 99999999999999999887 899999999999999999999999 999999999999999 999
Q ss_pred hhHhCCC--CcccCCcccccCCCCCCC-CCchhHHHHHHHHHHHHcCCCCCCcEEEEec--ccHHHHHHHHHHHHCCCEE
Q 010384 368 RRLAGHF--QGSFTGPRIFWSGSSLRT-EATGYGLVFFAQLILADMNKELKGLRCVVSG--SGKIAMHVLEKLIAYGAIP 442 (512)
Q Consensus 368 ~~~~g~~--~g~vTGKpl~~GGs~gR~-eATG~GV~~~i~eal~~lg~~L~GkrVaIQG--fGNVG~~aAe~L~e~GakV 442 (512)
++.+|++ .+++||||+.+||+.++. ++||+||+++++++++++|.++++.||++|| |||||+++++++. +||
T Consensus 612 s~~rG~~~~~af~TGKp~~lGG~~hk~yG~T~rGv~~~v~~~~~~lgid~~~~Tv~~~Ggp~GDVGgN~~lls~---~kl 688 (1002)
T PTZ00324 612 AKKRGYPFWKSFTTGKSPSMGGIPHDTYGMTTRSVRAYVTGILEKLGLNEEEVTKFQTGGPDGDLGSNELLLSK---EKT 688 (1002)
T ss_pred HHHcCCCCCCCEEeCCCcccCCcCCCcCcccchhHHHHHHHHHHHcCCCccCCEEEEECCCCchHHHHHHHHhC---CEE
Confidence 9999986 599999999999999997 9999999999999999999999999999999 9999999998764 799
Q ss_pred EEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcccccc------ccC-----------CCcEEe-----CCCCc---ccc
Q 010384 443 VSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS------KTY-----------ARSKYY-----DEAKP---WNE 497 (512)
Q Consensus 443 VaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l~~y~------~~~-----------pgA~~i-----~~~~i---~~~ 497 (512)
|||+|.+|.+|||+|||.++| .+++..++++.+|. .+| |+.+.+ .++++ +..
T Consensus 689 VAv~D~~G~~~DP~GLd~~EL---~rl~~~~~s~~~yd~~~lS~gG~~~~r~~k~i~l~~~~~i~~g~~~~~~~~l~~~~ 765 (1002)
T PTZ00324 689 VGIVDGSGVLHDPEGLNREEL---RRLAHHRLPAREFDESKLSPQGFLVLTDDRDVKLPDGTIVESGLRFRNEFHLLPYS 765 (1002)
T ss_pred EEEEcCCCEEECCCCCCHHHH---HHHHHcCCCcccCchhhccCCCceeecccccccCCccceeccccccchhhccccCC
Confidence 999999999999999999986 77777777887652 122 333433 23444 467
Q ss_pred ch--hccccc-cccc
Q 010384 498 RL--SYTCRR-FKYA 509 (512)
Q Consensus 498 ~c--l~PcAt-~~~~ 509 (512)
+| |+|||. ++++
T Consensus 766 ~vDlliPaggr~~~I 780 (1002)
T PTZ00324 766 DADVFVPCGGRPRSV 780 (1002)
T ss_pred CccEEEECCCCcCcc
Confidence 88 999997 5543
No 9
>PF02812 ELFV_dehydrog_N: Glu/Leu/Phe/Val dehydrogenase, dimerisation domain; InterPro: IPR006097 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the dimerisation region of these enzymes.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 2BMA_C 1C1D_B 1BXG_A 1BW9_B 1C1X_A 2YFQ_B 3R3J_D 1V9L_C 1B26_C 2TMG_B ....
Probab=100.00 E-value=1.2e-47 Score=347.50 Aligned_cols=130 Identities=42% Similarity=0.720 Sum_probs=124.9
Q ss_pred CceEEEEEEeeEcCCCceEEEEEEEEEecCCCCCCCCCeEEecCCCHHHHHHHHHHHHHHHhhcCCCCCCceeEecCCCC
Q 010384 241 PERMIVFRVPWVDDRGETHVNRGFRVQFSQALGPCRGGLRFHPSMNLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPK 320 (512)
Q Consensus 241 PeR~i~~~vp~~~D~G~~~v~~GyRVqHs~alGPaKGGiRfhp~V~ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DPk 320 (512)
|||+++|+|||++|+|....++|||||||+++||+||||||||++|++|+++||++|||||||++||||||||||.+||+
T Consensus 1 pe~v~~~~~~~~~d~g~~~~~~g~~v~h~~~~GPa~GGiR~~~~~s~~ev~~LA~~MT~K~Al~~lp~GGaKggI~~dp~ 80 (131)
T PF02812_consen 1 PERVIQVRVPVVMDDGPITGLRGYRVQHSTARGPAKGGIRMHPYVSEEEVLRLARGMTYKCALAGLPFGGAKGGIKIDPK 80 (131)
T ss_dssp -SEEEEEEEEEEETTSCEEEEEEEEEEEE-SSSSEEEEEEEETTSSHHHHHHHHHHHHHHHHHTTSS-EEEEEEEESSGG
T ss_pred CCEEEEEEEEEEeCCCCEEEEEEEEEEEcCCCCCCCCCeEEecCCCHHHHHHHHHHHHhhhhhccCCCCceeEEeecCcc
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CCCHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHhhH
Q 010384 321 GKSDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRL 370 (512)
Q Consensus 321 ~~S~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~~~ 370 (512)
++|+.|+|+++|+|+++|.++|||+.|||||||||+++||+||+++|+++
T Consensus 81 ~~s~~e~e~l~r~f~~~l~~~i~~~~~i~a~Dvgt~~~dm~~i~~~~~~~ 130 (131)
T PF02812_consen 81 DLSDNERERLTRRFGRALSPFIGPGRDIPAPDVGTGERDMAWIADEYRRV 130 (131)
T ss_dssp GS-HHHHHHHHHHHHHHHGGGSBTTTEEEEBBTTBSHHHHHHHHHHHHHH
T ss_pred cccHHHHHHHHHHHHHHHHHHhccCcEEECCcCCCCHHHHHHHHHhchhc
Confidence 99999999999999999999999999999999999999999999999976
No 10
>cd05313 NAD_bind_2_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 2. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia asimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids t
Probab=100.00 E-value=2.1e-34 Score=286.17 Aligned_cols=131 Identities=43% Similarity=0.785 Sum_probs=125.3
Q ss_pred CCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCC
Q 010384 379 TGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGF 458 (512)
Q Consensus 379 TGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~GL 458 (512)
||||+.+|||.||++||||||++++++++++++.+++|+||+||||||||+++|++|.+.|+|||+|||++|+||||+||
T Consensus 1 TGKp~~~GGs~gR~~aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~e~GakvvaVsD~~G~i~~~~Gl 80 (254)
T cd05313 1 TGKGLSWGGSLIRPEATGYGLVYFVEEMLKDRNETLKGKRVAISGSGNVAQYAAEKLLELGAKVVTLSDSKGYVYDPDGF 80 (254)
T ss_pred CCCCCcCCCCCCCCchhHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCceEECCCCC
Confidence 89999999999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred CHhhHHHHHHHHHhcCc-cccccccCCCcEEeCCCCccccch--hccccccccc
Q 010384 459 DYMKISFLRDIKSQQRS-LRDYSKTYARSKYYDEAKPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 459 Die~L~~L~e~K~~~G~-l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~~~ 509 (512)
|+++|..|+++++++++ +.+|.+.+|++++++++++|+++| |+|||+++++
T Consensus 81 d~~~l~~l~~~~~~~~~~v~~~~~~~~~a~~~~~~~~~~~~~DIliPcAl~~~I 134 (254)
T cd05313 81 TGEKLAELKEIKEVRRGRVSEYAKKYGTAKYFEGKKPWEVPCDIAFPCATQNEV 134 (254)
T ss_pred CHHHHHHHHHHHHhcCCcHHHHhhcCCCCEEeCCcchhcCCCcEEEeccccccC
Confidence 99999888999987776 688877788899999999999999 9999999976
No 11
>PF00208 ELFV_dehydrog: Glutamate/Leucine/Phenylalanine/Valine dehydrogenase; InterPro: IPR006096 Glutamate, leucine, phenylalanine and valine dehydrogenases are structurally and functionally related. They contain a Gly-rich region containing a conserved Lys residue, which has been implicated in the catalytic activity, in each case a reversible oxidative deamination reaction. Glutamate dehydrogenases (1.4.1.2 from EC, 1.4.1.3 from EC, and 1.4.1.4 from EC) (GluDH) are enzymes that catalyse the NAD- and/or NADP-dependent reversible deamination of L-glutamate into alpha-ketoglutarate [, ]. GluDH isozymes are generally involved with either ammonia assimilation or glutamate catabolism. Two separate enzymes are present in yeasts: the NADP-dependent enzyme, which catalyses the amination of alpha-ketoglutarate to L-glutamate; and the NAD-dependent enzyme, which catalyses the reverse reaction [] - this form links the L-amino acids with the Krebs cycle, which provides a major pathway for metabolic interconversion of alpha-amino acids and alpha- keto acids []. Leucine dehydrogenase (1.4.1.9 from EC) (LeuDH) is a NAD-dependent enzyme that catalyses the reversible deamination of leucine and several other aliphatic amino acids to their keto analogues []. Each subunit of this octameric enzyme from Bacillus sphaericus contains 364 amino acids and folds into two domains, separated by a deep cleft. The nicotinamide ring of the NAD+ cofactor binds deep in this cleft, which is thought to close during the hydride transfer step of the catalytic cycle. Phenylalanine dehydrogenase (1.4.1.20 from EC) (PheDH) is na NAD-dependent enzyme that catalyses the reversible deamidation of L-phenylalanine into phenyl-pyruvate []. Valine dehydrogenase (1.4.1.8 from EC) (ValDH) is an NADP-dependent enzyme that catalyses the reversible deamidation of L-valine into 3-methyl-2-oxobutanoate []. This entry represents the C-terminal domain of these proteins.; GO: 0016491 oxidoreductase activity, 0006520 cellular amino acid metabolic process, 0055114 oxidation-reduction process; PDB: 1LEH_A 3AOG_D 3AOE_A 2YFQ_B 2YFH_B 1HRD_A 1K89_A 1AUP_A 1BGV_A 1B26_C ....
Probab=99.94 E-value=2e-27 Score=234.74 Aligned_cols=121 Identities=29% Similarity=0.451 Sum_probs=111.0
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHcCCC-CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHH
Q 010384 386 SGSSLRTEATGYGLVFFAQLILADMNKE-LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKIS 464 (512)
Q Consensus 386 GGs~gR~eATG~GV~~~i~eal~~lg~~-L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~ 464 (512)
|||.+|.++|||||++++++++++++.+ ++|+||+||||||||+++|++|++.|++||+|||++|+||||+|||+++|
T Consensus 1 GGs~~~~~aTg~GV~~~~~~~~~~~~~~~l~g~~v~IqGfG~VG~~~a~~l~~~Ga~vv~vsD~~G~i~~~~Gld~~~l- 79 (244)
T PF00208_consen 1 GGSGGRSEATGYGVAYAIEAALEHLGGDSLEGKRVAIQGFGNVGSHAARFLAELGAKVVAVSDSSGAIYDPDGLDVEEL- 79 (244)
T ss_dssp TCHTTTTTHHHHHHHHHHHHHHHHTTCHSSTTCEEEEEESSHHHHHHHHHHHHTTEEEEEEEESSEEEEETTEEHHHHH-
T ss_pred CCCCCCCcchHHHHHHHHHHHHHHcCCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEecCceEEEcCCCchHHHH-
Confidence 8999999999999999999999998765 99999999999999999999999999999999999999999999999885
Q ss_pred HHHHHHHhcCc-cccccccCC-CcEEeCCC-Cccccch--hccccccccc
Q 010384 465 FLRDIKSQQRS-LRDYSKTYA-RSKYYDEA-KPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 465 ~L~e~K~~~G~-l~~y~~~~p-gA~~i~~~-~i~~~~c--l~PcAt~~~~ 509 (512)
++++++++. +..|....+ ++++++++ ++|+++| |+|||+++++
T Consensus 80 --~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~il~~~~DiliP~A~~~~I 127 (244)
T PF00208_consen 80 --LRIKEERGSRVDDYPLESPDGAEYIPNDDEILSVDCDILIPCALGNVI 127 (244)
T ss_dssp --HHHHHHHSSHSTTGTHTCSSTSEEECHHCHGGTSSSSEEEEESSSTSB
T ss_pred --HHHHHHhCCcccccccccccceeEeccccccccccccEEEEcCCCCee
Confidence 888888887 888854334 58899984 9999999 9999999986
No 12
>cd01076 NAD_bind_1_Glu_DH NAD(P) binding domain of glutamate dehydrogenase, subgroup 1. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. Glutamate DH is a multidomain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids
Probab=99.94 E-value=1.7e-26 Score=225.83 Aligned_cols=117 Identities=24% Similarity=0.304 Sum_probs=110.8
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHH
Q 010384 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISF 465 (512)
Q Consensus 386 GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~ 465 (512)
|||.+|+++|||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|+|++|++|||+|||+++|
T Consensus 1 gG~~~~~~~Tg~Gv~~~~~~~~~~~~~~l~~~~v~I~G~G~VG~~~a~~L~~~g~~vv~v~D~~g~~~~~~Gld~~~l-- 78 (227)
T cd01076 1 GGSLGREEATGRGVAYATREALKKLGIGLAGARVAIQGFGNVGSHAARFLHEAGAKVVAVSDSDGTIYNPDGLDVPAL-- 78 (227)
T ss_pred CCCCCCCccchHHHHHHHHHHHHhcCCCccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEECCCCeEECCCCCCHHHH--
Confidence 799999999999999999999999999999999999999999999999999999999999999999999999998875
Q ss_pred HHHHHHhcCccccccccCCCcEEeCCCCccccch--hccccccccc
Q 010384 466 LRDIKSQQRSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 466 L~e~K~~~G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~~~ 509 (512)
++++++++++.+| +++++++++++|+.+| ++|||+++++
T Consensus 79 -~~~~~~~g~l~~~----~~~~~~~~~~i~~~~~Dvlip~a~~~~i 119 (227)
T cd01076 79 -LAYKKEHGSVLGF----PGAERITNEELLELDCDILIPAALENQI 119 (227)
T ss_pred -HHHHHhcCCcccC----CCceecCCccceeecccEEEecCccCcc
Confidence 8888888998876 5688899999999999 9999999875
No 13
>cd05211 NAD_bind_Glu_Leu_Phe_Val NAD(P) binding domain of glutamate dehydrogenase, leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NAD(P)+. This subfamily includes glutamate, leucine, phenylalanine, and valine DHs. Glutamate DH is a multi-domain enzyme that catalyzes the reaction from glutamate to 2-oxyoglutarate and ammonia in the presence of NAD or NADP. It is present in all organisms. Enzymes involved in ammonia assimilation are typically NADP+-dependent, while those involved in glutamate catabolism are generally NAD+-dependent. As in other NAD+-dependent DHs, monomers in this family have 2 domains separated by a deep cleft. Here the c-terminal domain contains a modified NAD-binding Rossmann fold with 7 rather than the usual 6 beta strands and one strand anti-parral
Probab=99.92 E-value=9.1e-25 Score=212.47 Aligned_cols=108 Identities=22% Similarity=0.345 Sum_probs=99.9
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhc
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~ 473 (512)
||||||++++++++++++.+++|+||+||||||||+++|++|.+.|++||+|||++|++||| |||++++ ++++.+.
T Consensus 1 aTg~Gv~~~~~~~~~~~~~~l~g~~vaIqGfGnVG~~~a~~L~~~G~~vV~vsD~~g~i~~~-Gld~~~l---~~~~~~~ 76 (217)
T cd05211 1 ATGYGVVVAMKAAMKHLGDSLEGLTVAVQGLGNVGWGLAKKLAEEGGKVLAVSDPDGYIYDP-GITTEEL---INYAVAL 76 (217)
T ss_pred CchhHHHHHHHHHHHHcCCCcCCCEEEEECCCHHHHHHHHHHHHcCCEEEEEEcCCCcEECC-CCCHHHH---HHHHHhh
Confidence 79999999999999999999999999999999999999999999999999999999999999 9999885 7777777
Q ss_pred CccccccccCCCcEEeCCCCccccch--hccccccccc
Q 010384 474 RSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 474 G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~~~ 509 (512)
+++..| |.+++++++++|+.+| ++|||+++++
T Consensus 77 ~~~~~~----~~~~~~~~~~l~~~~~DVlipaA~~~~i 110 (217)
T cd05211 77 GGSARV----KVQDYFPGEAILGLDVDIFAPCALGNVI 110 (217)
T ss_pred CCcccc----CcccccCcccceeccccEEeeccccCcc
Confidence 777665 5677889999999999 9999999965
No 14
>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase. Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc
Probab=99.50 E-value=8.2e-14 Score=133.81 Aligned_cols=93 Identities=17% Similarity=0.250 Sum_probs=78.2
Q ss_pred CCCchhHHHHHHHHHHHHc--CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHH
Q 010384 392 TEATGYGLVFFAQLILADM--NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDI 469 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~l--g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~ 469 (512)
+.+|||||+++++++++++ +.+++|++|+||||||||+++|+.|.+.|++|+ ++|.+ .+++ .++
T Consensus 2 s~aTg~Gv~~~~~~~~~~~~~~~~l~gk~v~I~G~G~vG~~~A~~L~~~G~~Vv-v~D~~----------~~~~---~~~ 67 (200)
T cd01075 2 SPPTAYGVFLGMKAAAEHLLGTDSLEGKTVAVQGLGKVGYKLAEHLLEEGAKLI-VADIN----------EEAV---ARA 67 (200)
T ss_pred CChhHHHHHHHHHHHHHHhcCCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEcCC----------HHHH---HHH
Confidence 5699999999999999997 789999999999999999999999999999999 88873 4443 343
Q ss_pred HHhcCccccccccCCCcEEeCCCCccccch--hccccccccc
Q 010384 470 KSQQRSLRDYSKTYARSKYYDEAKPWNERL--SYTCRRFKYA 509 (512)
Q Consensus 470 K~~~G~l~~y~~~~pgA~~i~~~~i~~~~c--l~PcAt~~~~ 509 (512)
++. + +++.++++++|..+| ++|||+++++
T Consensus 68 ~~~----------~-g~~~v~~~~l~~~~~Dv~vp~A~~~~I 98 (200)
T cd01075 68 AEL----------F-GATVVAPEEIYSVDADVFAPCALGGVI 98 (200)
T ss_pred HHH----------c-CCEEEcchhhccccCCEEEeccccccc
Confidence 331 1 467778888998888 9999998754
No 15
>COG2902 NAD-specific glutamate dehydrogenase [Amino acid transport and metabolism]
Probab=98.69 E-value=2.1e-07 Score=109.09 Aligned_cols=206 Identities=18% Similarity=0.210 Sum_probs=139.8
Q ss_pred EEEEEEEecCCCCCCCCCeEEecCCC---HHHHHHHHHHHHHHHhhcCCCCCCceeEecCCC--CCCCHHHHH----HHH
Q 010384 261 NRGFRVQFSQALGPCRGGLRFHPSMN---LSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDP--KGKSDNEIM----RFC 331 (512)
Q Consensus 261 ~~GyRVqHs~alGPaKGGiRfhp~V~---ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DP--k~~S~~Ele----R~~ 331 (512)
|+|++..+..+ +.||||.. +-+ .+|+.-|+..|..|| +.||=+|||||+.+.+ .+-|..|++ +..
T Consensus 785 vEGvHLRFg~V---ARGGLRws-DR~~D~rtEvlgLvKAQqvKN--avIvpvGAKGgf~~k~lp~g~~RD~i~~eg~~~Y 858 (1592)
T COG2902 785 VEGVHLRFGPV---ARGGLRWS-DRNQDFRTEVLGLVKAQQVKN--AVIVPVGAKGGFLLKRLPTGGDRDAIFAEGIACY 858 (1592)
T ss_pred ceEEEeecccc---cccccccc-ccchhHHHHHHHHHHHHHhcC--CcccccCCcceEecccCCCCCchHHHHHhhHHHH
Confidence 46776666553 88999998 544 679999999999999 6799999999997654 455666653 344
Q ss_pred HHHHHHHHHh---cCCCC-----C-----------CCCCCCCCChhhHHHHHHHHhhHhCCC--CcccCCcccccCCCC-
Q 010384 332 QSFMNEIHRY---LGPDK-----D-----------LPSEEMGVGTREMGYLFGQYRRLAGHF--QGSFTGPRIFWSGSS- 389 (512)
Q Consensus 332 r~f~~eL~~~---IGp~~-----D-----------VPApDvGT~~reMawm~d~Y~~~~g~~--~g~vTGKpl~~GGs~- 389 (512)
+.|++-|... |.-+. + |.|+|=||- .--+| +..-.+-+|.+ .++.||++ +|..
T Consensus 859 k~Fi~~LlditDnii~~~vvpP~~vvr~d~dDpyLvVaaDKGTA-tFsD~-AN~vA~~~~fwl~DAFaSGgS---~GydH 933 (1592)
T COG2902 859 KAFISGLLDITDNIIDDQVVPPADVVRLDGDDPYLVVAADKGTA-TFSDI-ANSVAREYGFWLGDAFASGGS---AGYDH 933 (1592)
T ss_pred HHHHHHHHHHHHHhhcCCcCCChhhhhcCCCCCeEEEecCCCcc-cHHHH-HHHHHHHhCCChhhhhhcCCC---CCCCc
Confidence 5677766642 21111 1 347888874 22222 22223334433 24556654 3442
Q ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc----cHHHHHHHHHHHHCCCEEEEEeCCCceeeCC-CCCCHhhHH
Q 010384 390 LRTEATGYGLVFFAQLILADMNKELKGLRCVVSGS----GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDE-DGFDYMKIS 464 (512)
Q Consensus 390 gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf----GNVG~~aAe~L~e~GakVVaVSDs~G~Iydp-~GLDie~L~ 464 (512)
.--..|++|+..+++.-.+.+|.++....+-+.|. |.|+.+- .|...-.+.||+-|..+-.+|| -+++...+.
T Consensus 934 K~mGITarGaweaVkrhFrelg~d~Q~~~fTvvgiGdmsGDVfgNg--MLLS~~irLiAAfDhrhIFiDP~pd~a~S~~e 1011 (1592)
T COG2902 934 KKMGITARGAWEAVKRHFRELGLDTQTSPFTVVGIGDMSGDVFGNG--MLLSKHIRLIAAFDHRHIFIDPNPDLAVSFAE 1011 (1592)
T ss_pred cccccchhhHHHHHHHHHHHhcccCCCCceEEEeeCCCCccccccc--eeccccceeeEEecCCceeeCCCCCccccHHH
Confidence 34569999999999999999999988888888885 6676663 4455567799999999999999 678776543
Q ss_pred HHHHHHHhcCccccc
Q 010384 465 FLRDIKSQQRSLRDY 479 (512)
Q Consensus 465 ~L~e~K~~~G~l~~y 479 (512)
+-.-+...+.+..+|
T Consensus 1012 R~RlF~lpRSsw~DY 1026 (1592)
T COG2902 1012 RKRLFALPRSSWSDY 1026 (1592)
T ss_pred HHHHhcCCcCchhhc
Confidence 222233345567776
No 16
>PRK06392 homoserine dehydrogenase; Provisional
Probab=98.65 E-value=2.9e-08 Score=102.79 Aligned_cols=59 Identities=32% Similarity=0.434 Sum_probs=50.5
Q ss_pred cEEEEecccHHHHHHHHHHHH--------CCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCccccc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA--------YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDY 479 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e--------~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l~~y 479 (512)
++|+|+||||||+.+++.|.+ .+.+||+|+|++|++++++|||++++ ++++++ +.+..|
T Consensus 1 mrVaIiGfG~VG~~va~~L~~~~~~~~~g~~l~VVaVsds~g~l~~~~Gldl~~l---~~~~~~-g~l~~~ 67 (326)
T PRK06392 1 IRISIIGLGNVGLNVLRIIKSRNDDRRNNNGISVVSVSDSKLSYYNERGLDIGKI---ISYKEK-GRLEEI 67 (326)
T ss_pred CEEEEECCCHHHHHHHHHHHhCHHhHhcCCCeEEEEEEECCCcccCCcCCChHHH---HHHHhc-CccccC
Confidence 379999999999999999987 46899999999999999999999885 666655 655444
No 17
>PRK08374 homoserine dehydrogenase; Provisional
Probab=98.64 E-value=2.5e-08 Score=103.27 Aligned_cols=61 Identities=23% Similarity=0.414 Sum_probs=54.3
Q ss_pred cEEEEecccHHHHHHHHHHHH--------CC--CEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcccccc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA--------YG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDYS 480 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e--------~G--akVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l~~y~ 480 (512)
.+|+||||||||+++++.|.+ .| .+|++|+|++|++|||+|+|++++ ++++++++.+..|.
T Consensus 3 i~VaIiG~GnVG~~~~~~L~~~~~~l~~~~G~~l~VvaV~ds~~~~~~~~Gid~~~l---~~~~~~~~~~~~~~ 73 (336)
T PRK08374 3 VKVSIFGFGNVGRAVAEVLAEKSRVFKERYGVELKVVSITDTSGTIWLPEDIDLREA---KEVKENFGKLSNWG 73 (336)
T ss_pred eEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCccccCCCCCChHHH---HHhhhccCchhhcc
Confidence 689999999999999999987 56 899999999999999999999875 88888888777663
No 18
>PF05088 Bac_GDH: Bacterial NAD-glutamate dehydrogenase
Probab=98.54 E-value=8.6e-07 Score=106.60 Aligned_cols=189 Identities=18% Similarity=0.205 Sum_probs=135.2
Q ss_pred EEEEEEEecCCCCCCCCCeEEecCC--CHHHHHHHHHHHHHHHhhcCCCCCCceeEecCCCCCC--CHH----HHHHHHH
Q 010384 261 NRGFRVQFSQALGPCRGGLRFHPSM--NLSIAKFLGFEQTLKNALSPYKLGGAAGGSDFDPKGK--SDN----EIMRFCQ 332 (512)
Q Consensus 261 ~~GyRVqHs~alGPaKGGiRfhp~V--~ldEvkaLA~~MT~KnALagLP~GGaKGGI~~DPk~~--S~~----EleR~~r 332 (512)
|+|++..+... +.||||++-.. =..||+.|+..|..|| +.||=||||||+.++.... +.. |.....+
T Consensus 723 ~eGvHLR~g~V---ARGGlRwSdR~eDfRtEvlgL~kaQ~vKN--avIvp~GsKGgfv~k~~~~~~~r~~~~~~~~~~y~ 797 (1528)
T PF05088_consen 723 FEGVHLRFGDV---ARGGLRWSDRPEDFRTEVLGLVKAQQVKN--AVIVPVGSKGGFVVKQLPDPADRDAWQAEGIACYK 797 (1528)
T ss_pred eEEEEcccccc---ccCcccccCCHHHHHHHHHHHHHHHHhcC--CcccCCCCceeEEecCCCCCCCHHHHHHHHHHHHH
Confidence 46777777664 99999995221 1589999999999999 7899999999998765433 333 4455678
Q ss_pred HHHHHHHHh---------cCC---------CCC-CCCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCC--
Q 010384 333 SFMNEIHRY---------LGP---------DKD-LPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLR-- 391 (512)
Q Consensus 333 ~f~~eL~~~---------IGp---------~~D-VPApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR-- 391 (512)
.|++.|... +.| |-+ |-|.|=|| ..+.=++.+-+.-+|.+ -|.--..|||.|-
T Consensus 798 ~fi~~lLd~TDN~~~g~vv~p~~vv~~D~dDpYLVVAADKGT--AtfSD~AN~ia~~~gfW----LgDAFASGGS~GYDH 871 (1528)
T PF05088_consen 798 TFIRALLDLTDNLVDGKVVPPPDVVRYDGDDPYLVVAADKGT--ATFSDIANEIAAEYGFW----LGDAFASGGSAGYDH 871 (1528)
T ss_pred HHHHHHHhhccCCCCCccCCCcceeecCCCCCceEeecCCCc--chHHHHHHHHHHHcCCC----cchhhhcCCcCCCCc
Confidence 899998864 222 222 45788888 34444555555555544 4455566788764
Q ss_pred --CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHH--HHHHHCCCEEEEEeCCCceeeCCCCCCHh
Q 010384 392 --TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVL--EKLIAYGAIPVSVSDAKGYLVDEDGFDYM 461 (512)
Q Consensus 392 --~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aA--e~L~e~GakVVaVSDs~G~Iydp~GLDie 461 (512)
-..|++|...+++--++.+|.++....+.|.|.|..+.=+. -.|...-.+.||--|..--..||+= |++
T Consensus 872 K~mGITArGAWesvkrHFrelg~D~q~~~fTvvGiGDMsGDVFGNGMLlS~~irLvaAF~H~hIFiDP~P-D~~ 944 (1528)
T PF05088_consen 872 KKMGITARGAWESVKRHFRELGIDIQTDPFTVVGIGDMSGDVFGNGMLLSRHIRLVAAFNHRHIFIDPDP-DPA 944 (1528)
T ss_pred hhhccchhhHHHHHHHHHHHhCCCcCCCceEEEEecCCCccccccchhcccceeEEEecCcceeecCcCC-Chh
Confidence 45899999999999999999999888888888644332221 1355667899999999888889886 654
No 19
>cd05191 NAD_bind_amino_acid_DH NAD(P) binding domain of amino acid dehydrogenase-like proteins. Amino acid dehydrogenase(DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and are found in glutamate, leucine, and phenylalanine DHs (DHs), methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily includes a wide variety of protein families including NAD(P)- binding domains of alcohol DHs, tyrosine-dependent oxidoreductases, glyceraldehyde-3-phosphate DH, lactate/malate DHs, formate/glycerate DHs, siroheme synthases, 6-phosphogluconate DH, amino acid DHs, repressor rex, NAD-binding potassium channel domain, CoA-binding, and ornithine cyclodeaminase-like domains. These domains have an al
Probab=98.03 E-value=1.9e-05 Score=66.15 Aligned_cols=55 Identities=31% Similarity=0.337 Sum_probs=50.9
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+||+|++.++++..+..+.++++++++|+|+|++|+.+++.|.+.|.+.|.++|+
T Consensus 1 ~t~~~~~~~l~~~~~~~~~~~~~~~v~i~G~G~~g~~~a~~l~~~~~~~v~v~~r 55 (86)
T cd05191 1 ATAAGAVALLKAAGKVTNKSLKGKTVVVLGAGEVGKGIAKLLADEGGKKVVLCDR 55 (86)
T ss_pred ChhHHHHHHHHHHHHHhCCCCCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEcC
Confidence 5899999999999998889999999999999999999999999997666778888
No 20
>PRK06270 homoserine dehydrogenase; Provisional
Probab=97.76 E-value=4.8e-05 Score=79.01 Aligned_cols=60 Identities=27% Similarity=0.417 Sum_probs=50.5
Q ss_pred cEEEEecccHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCccccc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSLRDY 479 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~----------GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l~~y 479 (512)
.+|+|+|+|+||+.+++.|.+. +.+||+|+|+++.+|+++|+|++++ .+.++..+.+..|
T Consensus 3 i~V~IiG~G~VG~~~~~~L~~~~~~~~~~~g~~~~vvai~d~~~~~~~~~Gi~~~~~---~~~~~~~~~~~~~ 72 (341)
T PRK06270 3 MKIALIGFGGVGQGVAELLAEKREYLKKRYGLDLKVVAIADSSGSAIDPDGLDLELA---LKVKEETGKLADY 72 (341)
T ss_pred EEEEEECCCHHHHHHHHHHHHhHHHHHHHcCCCEEEEEEEeCCCcccCcCCCCHHHH---HHHHhccCCcccC
Confidence 5899999999999999999865 6899999999999999999998775 6666665655444
No 21
>PLN02700 homoserine dehydrogenase family protein
Probab=97.23 E-value=0.00051 Score=73.03 Aligned_cols=63 Identities=25% Similarity=0.385 Sum_probs=48.6
Q ss_pred cEEEEecccHHHHHHHHHHHHC-------C--CEEEEEeCCCceeeCCC----CCCHhhHHHHHHHHHhcCccccc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY-------G--AIPVSVSDAKGYLVDED----GFDYMKISFLRDIKSQQRSLRDY 479 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-------G--akVVaVSDs~G~Iydp~----GLDie~L~~L~e~K~~~G~l~~y 479 (512)
..|+|.|+||||+.+++.|.+. | .+|++|+||++.++|++ |||++.+...+..+.+...+..|
T Consensus 4 i~i~liG~G~VG~~ll~ql~~~~~~~~~~gi~l~v~~ia~s~~~l~~~~~~~~Gldl~~~~~~~~~~~~~~~~~~~ 79 (377)
T PLN02700 4 IPVLLLGCGGVGRHLLRHIVSCRSLHAKQGVRIRVVGVCDSKSLVLAEDVLNEELDDALLSEVCLAKSKGSPLSAL 79 (377)
T ss_pred EEEEEEecChHHHHHHHHHHHHHHHHHhcCceEEEEEEECCCceEECCccccCCCCHHHHHHHHHhhccccchhhh
Confidence 5789999999999999987752 3 58999999999999975 99988864444455554445443
No 22
>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3.3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....
Probab=97.13 E-value=0.0013 Score=62.75 Aligned_cols=42 Identities=33% Similarity=0.427 Sum_probs=31.1
Q ss_pred HHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 406 al~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+++..+..+.||+++|.|||.||+.+|+.|..+|++|+ |+|.
T Consensus 13 i~r~t~~~l~Gk~vvV~GYG~vG~g~A~~lr~~Ga~V~-V~e~ 54 (162)
T PF00670_consen 13 IMRATNLMLAGKRVVVIGYGKVGKGIARALRGLGARVT-VTEI 54 (162)
T ss_dssp HHHHH-S--TTSEEEEE--SHHHHHHHHHHHHTT-EEE-EE-S
T ss_pred HHhcCceeeCCCEEEEeCCCcccHHHHHHHhhCCCEEE-EEEC
Confidence 33455788999999999999999999999999999986 9988
No 23
>PRK06813 homoserine dehydrogenase; Validated
Probab=96.52 E-value=0.0026 Score=66.95 Aligned_cols=47 Identities=19% Similarity=0.322 Sum_probs=41.6
Q ss_pred cEEEEecccHHHHHHHHHHHHC----------CCEEEEEeCCCceeeCCCCCCHhhH
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVDEDGFDYMKI 463 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~----------GakVVaVSDs~G~Iydp~GLDie~L 463 (512)
.+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++++|+|++++
T Consensus 3 i~I~liG~G~VG~~~~~~L~~~~~~l~~~~g~~l~v~~i~~~~~~~~~~~gi~~~~~ 59 (346)
T PRK06813 3 IKVVLSGYGTVGREFIKLLNEKYLYINETYGIDLVVSGVLGRNVAIHNEDGLSIHHL 59 (346)
T ss_pred eEEEEEecChhHHHHHHHHHHhHHHHHHhcCCcEEEEEEEecchhhccccCCChhhh
Confidence 5799999999999999999753 2579999999999999999998663
No 24
>smart00597 ZnF_TTF zinc finger in transposases and transcription factors.
Probab=96.50 E-value=0.00073 Score=58.50 Aligned_cols=65 Identities=25% Similarity=0.616 Sum_probs=53.6
Q ss_pred HHHHHHHHhhcc-ee-eeeecCCccceeehhhhhh--ccccCCCCCCCcCcccccccc-chhhhhhhhHHHHH
Q 010384 100 KRWREEWADTYK-WA-YVDVKEGTARIFCSVCREY--GRKHRRNPYGNEGSRNMQMSA-LEEHNNSLLHKEAL 167 (512)
Q Consensus 100 ~~~~~~w~~~~~-w~-~~~~~~~~~~~~c~~c~~~--~~~~~~n~~~~~g~~~~~~~a-l~~h~~s~~hk~al 167 (512)
|+-.-.|-+.|+ |. |-.. .+++||-+|..+ |....-+.|.++|-+|+.... +..|..+..|..|-
T Consensus 3 RrF~~~W~~~~~~WL~YS~~---~D~~fC~~C~lF~~~~~~~~~~f~~~Gf~nwk~~~~l~~H~~s~~H~~a~ 72 (90)
T smart00597 3 RRFQRSWFKQFPDWLEYSVE---KDKAFCKACYLFRPGRDGDSDLFVTEGFCSWNVERILKQHEVSKRHRNAF 72 (90)
T ss_pred ccccccccccCcchheeecc---cCcEEEEEEEeeccCCCCCcCcccccCcCcchhhhhHHhhcCCHHHHhHH
Confidence 445567888899 97 4433 556999999998 456788899999999999886 99999999999986
No 25
>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related. All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....
Probab=96.18 E-value=0.0077 Score=56.80 Aligned_cols=38 Identities=26% Similarity=0.455 Sum_probs=32.4
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.++.|+||.|.|+|++|+.+|+.|...|++|++..-+
T Consensus 31 ~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~ 68 (178)
T PF02826_consen 31 GRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRS 68 (178)
T ss_dssp BS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESS
T ss_pred ccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEeccc
Confidence 46899999999999999999999999999999866544
No 26
>PRK08306 dipicolinate synthase subunit A; Reviewed
Probab=96.13 E-value=0.012 Score=60.31 Aligned_cols=54 Identities=24% Similarity=0.295 Sum_probs=44.4
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+.+|+.| ++.++++..+.++.|++|.|.|+|.+|+.++..|..+|++|+ +.|.+
T Consensus 131 s~~~aeg---av~~a~~~~~~~l~g~kvlViG~G~iG~~~a~~L~~~Ga~V~-v~~r~ 184 (296)
T PRK08306 131 SIPTAEG---AIMMAIEHTPITIHGSNVLVLGFGRTGMTLARTLKALGANVT-VGARK 184 (296)
T ss_pred cHhHHHH---HHHHHHHhCCCCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEECC
Confidence 4567777 455677777888999999999999999999999999999775 66663
No 27
>cd01065 NAD_bind_Shikimate_DH NAD(P) binding domain of Shikimate dehydrogenase. Shikimate dehydrogenase (DH) is an amino acid DH family member. Shikimate pathway links metabolism of carbohydrates to de novo biosynthesis of aromatic amino acids, quinones and folate. It is essential in plants, bacteria, and fungi but absent in mammals, thus making enzymes involved in this pathway ideal targets for broad spectrum antibiotics and herbicides. Shikimate DH catalyzes the reduction of 3-hydroshikimate to shikimate using the cofactor NADH. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann
Probab=96.12 E-value=0.018 Score=51.72 Aligned_cols=48 Identities=25% Similarity=0.301 Sum_probs=39.0
Q ss_pred HHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 401 FFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 401 ~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++++.++++.+.++++++|+|.|.|++|..+++.|.+.|...|.+.|.
T Consensus 4 ~g~~~a~~~~~~~~~~~~i~iiG~G~~g~~~a~~l~~~g~~~v~v~~r 51 (155)
T cd01065 4 LGFVRALEEAGIELKGKKVLILGAGGAARAVAYALAELGAAKIVIVNR 51 (155)
T ss_pred HHHHHHHHhhCCCCCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 345566666777889999999999999999999999997555557776
No 28
>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional
Probab=96.11 E-value=0.011 Score=63.03 Aligned_cols=54 Identities=15% Similarity=0.101 Sum_probs=42.1
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.+-=++..+-.+.+..+.+|.|+||.|.|+||||+.+|+.|...|.+|++. |.
T Consensus 94 aVAE~~~~~lL~l~r~~g~~L~gktvGIIG~G~IG~~vA~~l~a~G~~V~~~-dp 147 (378)
T PRK15438 94 AVVEYVFSSLLMLAERDGFSLHDRTVGIVGVGNVGRRLQARLEALGIKTLLC-DP 147 (378)
T ss_pred HHHHHHHHHHHHHhccCCCCcCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 3333334444444556678999999999999999999999999999999855 54
No 29
>PRK09436 thrA bifunctional aspartokinase I/homoserine dehydrogenase I; Provisional
Probab=96.10 E-value=0.013 Score=67.88 Aligned_cols=61 Identities=18% Similarity=0.216 Sum_probs=48.1
Q ss_pred HHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHC---------CCEEEEEeCCCceeeCCCCCCHhhH
Q 010384 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY---------GAIPVSVSDAKGYLVDEDGFDYMKI 463 (512)
Q Consensus 403 i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~---------GakVVaVSDs~G~Iydp~GLDie~L 463 (512)
++.+-+.+-.+-+-.+|+|.|||+||+.+++.|.+. ..+|++|+|+++.+++++|+|.+.+
T Consensus 452 l~~LH~~f~~~~~~~~i~l~G~G~VG~~~~~~l~~~~~~l~~~~~~l~v~~i~~s~~~~~~~~g~~~~~~ 521 (819)
T PRK09436 452 LRACHQSFFLSDQVLDVFVIGVGGVGGALLEQIKRQQPWLKKKNIDLRVCGIANSRKMLLDEHGIDLDNW 521 (819)
T ss_pred HHHHHHHHhcccccccEEEEecCHHHHHHHHHHHHHHHHHHhcCCcEEEEEEEcCCccccCCCCCCHHHH
Confidence 333333333444678899999999999999998753 3579999999999999999998764
No 30
>PRK09466 metL bifunctional aspartate kinase II/homoserine dehydrogenase II; Provisional
Probab=95.99 E-value=0.017 Score=67.07 Aligned_cols=61 Identities=26% Similarity=0.331 Sum_probs=47.6
Q ss_pred HHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHC--------C--CEEEEEeCCCceeeCCCCCCHhhH
Q 010384 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY--------G--AIPVSVSDAKGYLVDEDGFDYMKI 463 (512)
Q Consensus 403 i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~--------G--akVVaVSDs~G~Iydp~GLDie~L 463 (512)
++.+-+.+-.+-+-.+|+|.||||||+.+++.|.+. | .+|++|+|+++.+++++|+|...+
T Consensus 445 v~~LH~~f~~~~~~i~i~l~G~G~VG~~l~~~l~~~~~~l~~~~g~~~~v~~I~~s~~~~~~~~gi~~~~~ 515 (810)
T PRK09466 445 IQGLHQSLFRAEKRIGLVLFGKGNIGSRWLELFAREQSTLSARTGFEFVLVGVVDSRRSLLNYDGLDASRA 515 (810)
T ss_pred HHHHHHHHhCcCceEEEEEEecCCChHHHHHHHHHHHHHHHHhcCCCEEEEEEEeCCccccCccCCCHHHH
Confidence 333333333344557899999999999999998762 3 678999999999999999997664
No 31
>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit. This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.
Probab=95.98 E-value=0.017 Score=59.13 Aligned_cols=54 Identities=20% Similarity=0.318 Sum_probs=44.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+.+|+.|.+ ..+++..+.++.|++|+|.|+|.+|+.+|+.|...|++|+ |.|.+
T Consensus 130 ~~~~Ae~ai---~~al~~~~~~l~gk~v~IiG~G~iG~avA~~L~~~G~~V~-v~~R~ 183 (287)
T TIGR02853 130 SIPTAEGAI---MMAIEHTDFTIHGSNVMVLGFGRTGMTIARTFSALGARVF-VGARS 183 (287)
T ss_pred cHhHHHHHH---HHHHHhcCCCCCCCEEEEEcChHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 456777764 3455566779999999999999999999999999999876 66663
No 32
>PTZ00075 Adenosylhomocysteinase; Provisional
Probab=95.96 E-value=0.016 Score=63.66 Aligned_cols=53 Identities=25% Similarity=0.321 Sum_probs=40.9
Q ss_pred hhHHHHHH-HHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 396 GYGLVFFA-QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 396 G~GV~~~i-~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.||+..++ ..+++..+..+.|++|+|.|+|+||+.+|+.|...|++|+ +.|.+
T Consensus 233 ~~G~~~s~~d~~~R~~~~~LaGKtVgVIG~G~IGr~vA~rL~a~Ga~Vi-V~e~d 286 (476)
T PTZ00075 233 IYGCRHSLIDGIFRATDVMIAGKTVVVCGYGDVGKGCAQALRGFGARVV-VTEID 286 (476)
T ss_pred HHHHHHHHHHHHHHhcCCCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 34443333 4445555789999999999999999999999999999976 56543
No 33
>PRK00257 erythronate-4-phosphate dehydrogenase; Validated
Probab=95.87 E-value=0.017 Score=61.69 Aligned_cols=48 Identities=15% Similarity=0.102 Sum_probs=39.2
Q ss_pred HHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 400 VFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 400 ~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+..+-.+.+..+.++.|+||.|+|+||||+.+|+.|...|.+|++. |.
T Consensus 100 ~~~lL~l~r~~g~~l~gktvGIIG~G~IG~~va~~l~a~G~~V~~~-Dp 147 (381)
T PRK00257 100 LGSLLTLAEREGVDLAERTYGVVGAGHVGGRLVRVLRGLGWKVLVC-DP 147 (381)
T ss_pred HHHHHHHhcccCCCcCcCEEEEECCCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 3333444455678999999999999999999999999999999854 54
No 34
>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional
Probab=95.85 E-value=0.021 Score=61.82 Aligned_cols=56 Identities=23% Similarity=0.240 Sum_probs=43.8
Q ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 390 LRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 390 gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.....||.|++.+++.+ .+..+.|++|+|.|+|++|+.+|+.|...|++|+ |+|.+
T Consensus 189 dn~~gt~~s~~~ai~ra---t~~~l~Gk~VlViG~G~IG~~vA~~lr~~Ga~Vi-V~d~d 244 (425)
T PRK05476 189 DNRYGTGESLLDGIKRA---TNVLIAGKVVVVAGYGDVGKGCAQRLRGLGARVI-VTEVD 244 (425)
T ss_pred cccHHHHhhhHHHHHHh---ccCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEE-EEcCC
Confidence 33445777776665543 2566899999999999999999999999999976 67653
No 35
>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy). The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.
Probab=95.84 E-value=0.017 Score=62.26 Aligned_cols=51 Identities=22% Similarity=0.249 Sum_probs=41.6
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-||.++ +..+++..+..+.|++|+|.|+|.+|..+|+.+...|++|+ |+|.
T Consensus 183 g~g~s~---~~~i~r~t~~~l~GktVvViG~G~IG~~va~~ak~~Ga~Vi-V~d~ 233 (413)
T cd00401 183 GCRESL---IDGIKRATDVMIAGKVAVVAGYGDVGKGCAQSLRGQGARVI-VTEV 233 (413)
T ss_pred hhchhh---HHHHHHhcCCCCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEEC
Confidence 355554 35556666788999999999999999999999999999977 5665
No 36
>PLN02494 adenosylhomocysteinase
Probab=95.71 E-value=0.02 Score=62.79 Aligned_cols=52 Identities=17% Similarity=0.256 Sum_probs=41.9
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
-||.++ +..+++..+..+.|++|+|.|+|.+|+.+|+.+...|++|+ |.|.+
T Consensus 235 GtgqS~---~d~i~r~t~i~LaGKtVvViGyG~IGr~vA~~aka~Ga~VI-V~e~d 286 (477)
T PLN02494 235 GCRHSL---PDGLMRATDVMIAGKVAVICGYGDVGKGCAAAMKAAGARVI-VTEID 286 (477)
T ss_pred cccccH---HHHHHHhcCCccCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 355555 45556666778999999999999999999999999999987 55543
No 37
>cd05311 NAD_bind_2_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 2. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists primarily of archaeal and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydroph
Probab=95.68 E-value=0.033 Score=55.02 Aligned_cols=59 Identities=22% Similarity=0.320 Sum_probs=49.6
Q ss_pred HHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCCC
Q 010384 399 LVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDEDG 457 (512)
Q Consensus 399 V~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~Gak--VVaVSDs~G~Iydp~G 457 (512)
+..++..+++..+.+++++||+|.|.|.+|..+|+.|.+.|++ -|.|.|++|-++....
T Consensus 8 ~lAG~~~al~~~g~~l~~~rvlvlGAGgAg~aiA~~L~~~G~~~~~i~ivdr~gl~~~~r~ 68 (226)
T cd05311 8 TLAGLLNALKLVGKKIEEVKIVINGAGAAGIAIARLLLAAGAKPENIVVVDSKGVIYEGRE 68 (226)
T ss_pred HHHHHHHHHHHhCCCccCCEEEEECchHHHHHHHHHHHHcCcCcceEEEEeCCCccccccc
Confidence 4455566777778899999999999999999999999999998 7789999987765543
No 38
>cd01078 NAD_bind_H4MPT_DH NADP binding domain of methylene tetrahydromethanopterin dehydrogenase. Methylene Tetrahydromethanopterin Dehydrogenase (H4MPT DH) NADP binding domain. NADP-dependent H4MPT DH catalyzes the dehydrogenation of methylene- H4MPT and methylene-tetrahydrofolate (H4F) with NADP+ as cofactor. H4F and H4MPT are both cofactors that carry the one-carbon units between the formyl and methyl oxidation level. H4F and H4MPT are structurally analogous to each other with respect to the pterin moiety, but each has distinct side chain. H4MPT is present only in anaerobic methanogenic archaea and aerobic methylotrophic proteobacteria. H4MPT seems to have evolved independently from H4F and functions as a distinct carrier in C1 metabolism. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclo
Probab=95.68 E-value=0.036 Score=52.50 Aligned_cols=54 Identities=33% Similarity=0.281 Sum_probs=46.6
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-|++-.+..++..+++++.++++++++|.|. |.+|+.+++.|.+.|++|+.+ +.
T Consensus 6 ~ta~aav~~~~~~l~~~~~~l~~~~vlVlGgtG~iG~~~a~~l~~~g~~V~l~-~R 60 (194)
T cd01078 6 TTAAAAVAAAGKALELMGKDLKGKTAVVLGGTGPVGQRAAVLLAREGARVVLV-GR 60 (194)
T ss_pred HHHHHHHHHHHHHHHHhCcCCCCCEEEEECCCCHHHHHHHHHHHHCCCEEEEE-cC
Confidence 4777777888888888899999999999996 999999999999999988744 44
No 39
>PRK14175 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.67 E-value=0.024 Score=58.45 Aligned_cols=53 Identities=23% Similarity=0.327 Sum_probs=45.2
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccH-HHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGN-VG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+. ++++.+.+++|++|+|.|.|+ ||..+|..|.+.||+|+ |++++
T Consensus 138 ~PcTp~ai~~----ll~~~~i~l~Gk~vvVIGrs~~VG~pla~lL~~~gatVt-v~~s~ 191 (286)
T PRK14175 138 VPCTPLGIME----ILKHADIDLEGKNAVVIGRSHIVGQPVSKLLLQKNASVT-ILHSR 191 (286)
T ss_pred CCCcHHHHHH----HHHHcCCCCCCCEEEEECCCchhHHHHHHHHHHCCCeEE-EEeCC
Confidence 4678888754 456678999999999999998 99999999999999986 77774
No 40
>TIGR00936 ahcY adenosylhomocysteinase. This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).
Probab=95.63 E-value=0.021 Score=61.49 Aligned_cols=51 Identities=24% Similarity=0.273 Sum_probs=39.3
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.||.+++ ..+++..+..+.|++|+|.|+|++|..+|+.+...|++|+. .|.
T Consensus 176 g~g~s~~---~~i~r~t~~~l~Gk~VvViG~G~IG~~vA~~ak~~Ga~ViV-~d~ 226 (406)
T TIGR00936 176 GTGQSTI---DGILRATNLLIAGKTVVVAGYGWCGKGIAMRARGMGARVIV-TEV 226 (406)
T ss_pred ccchhHH---HHHHHhcCCCCCcCEEEEECCCHHHHHHHHHHhhCcCEEEE-EeC
Confidence 4555543 33344446679999999999999999999999999999874 543
No 41
>PRK14192 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=95.61 E-value=0.035 Score=56.96 Aligned_cols=52 Identities=27% Similarity=0.346 Sum_probs=43.3
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccH-HHHHHHHHHHHCCCEEEEEeCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGN-VG~~aAe~L~e~GakVVaVSDs 448 (512)
...|-+|++.. |++.+.+++|++|+|.|.|+ ||+.+|..|.+.|++ |+|+++
T Consensus 139 ~p~T~~gii~~----L~~~~i~l~Gk~vvViG~gg~vGkpia~~L~~~gat-Vtv~~~ 191 (283)
T PRK14192 139 GSATPAGIMRL----LKAYNIELAGKHAVVVGRSAILGKPMAMMLLNANAT-VTICHS 191 (283)
T ss_pred cCCcHHHHHHH----HHHcCCCCCCCEEEEECCcHHHHHHHHHHHHhCCCE-EEEEeC
Confidence 35677776554 45578999999999999998 999999999999995 568887
No 42
>cd01080 NAD_bind_m-THF_DH_Cyclohyd NADP binding domain of methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NADP binding domain of the Methylene-Tetrahydrofolate Dehydrogenase/cyclohydrolase (m-THF DH/cyclohydrolase) bifunctional enzyme. Tetrahydrofolate is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofucntional DH, as well a
Probab=95.56 E-value=0.038 Score=52.64 Aligned_cols=55 Identities=22% Similarity=0.264 Sum_probs=43.5
Q ss_pred CCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccH-HHHHHHHHHHHCCCEEEEEeCCC
Q 010384 390 LRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 390 gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGN-VG~~aAe~L~e~GakVVaVSDs~ 449 (512)
....+|++.++. +++....+++|++|+|.|.|. +|..+|+.|.+.|++| .|++++
T Consensus 22 ~~~p~~~~a~v~----l~~~~~~~l~gk~vlViG~G~~~G~~~a~~L~~~g~~V-~v~~r~ 77 (168)
T cd01080 22 GFIPCTPAGILE----LLKRYGIDLAGKKVVVVGRSNIVGKPLAALLLNRNATV-TVCHSK 77 (168)
T ss_pred CccCChHHHHHH----HHHHcCCCCCCCEEEEECCcHHHHHHHHHHHhhCCCEE-EEEECC
Confidence 445677777655 444556789999999999998 5999999999999985 477764
No 43
>PRK06487 glycerate dehydrogenase; Provisional
Probab=95.15 E-value=0.04 Score=57.00 Aligned_cols=36 Identities=22% Similarity=0.170 Sum_probs=32.9
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++...
T Consensus 144 ~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~ 179 (317)
T PRK06487 144 VELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQL 179 (317)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECC
Confidence 468999999999999999999999999999997653
No 44
>PF02882 THF_DHG_CYH_C: Tetrahydrofolate dehydrogenase/cyclohydrolase, NAD(P)-binding domain; InterPro: IPR020631 Enzymes that participate in the transfer of one-carbon units require the coenzyme tetrahydrofolate (THF). Various reactions generate one-carbon derivatives of THF, which can be interconverted between different oxidation states by methylene-THF dehydrogenase (1.5.1.5 from EC), methenyl-THF cyclohydrolase (3.5.4.9 from EC) and formyl-THF synthetase (6.3.4.3 from EC) [, ]. The dehydrogenase and cyclohydrolase activities are expressed by a variety of multifunctional enzymes, including the tri-functional eukaryotic C1-tetrahydrofolate synthase []; a bifunctional eukaryotic mitochondrial protein; and the bifunctional Escherichia coli folD protein [, ]. Methylene-tetrahydrofolate dehydrogenase and methenyltetrahydrofolate cyclo-hydrolase share an overlapping active site [], and as such are usually located together in proteins, acting in tandem on the carbon-nitrogen bonds of substrates other than peptide bonds. This entry represents the NAD(P)-binding domain found in these enzymes.; GO: 0003824 catalytic activity, 0004488 methylenetetrahydrofolate dehydrogenase (NADP+) activity, 0009396 folic acid-containing compound biosynthetic process, 0055114 oxidation-reduction process; PDB: 1B0A_A 2C2X_B 2C2Y_A 3NGL_C 3NGX_A 4A26_B 1EDZ_A 1EE9_A 3P2O_B 1DIA_A ....
Probab=95.01 E-value=0.065 Score=50.90 Aligned_cols=53 Identities=21% Similarity=0.308 Sum_probs=38.5
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEeccc-HHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfG-NVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..|++ ++|++.+.+++||+|+|.|-+ .||.-++.+|.+.||+|. +++++
T Consensus 16 ~PcTp~aii----~lL~~~~~~l~Gk~v~VvGrs~~VG~Pla~lL~~~~atVt-~~h~~ 69 (160)
T PF02882_consen 16 VPCTPLAII----ELLEYYGIDLEGKKVVVVGRSNIVGKPLAMLLLNKGATVT-ICHSK 69 (160)
T ss_dssp --HHHHHHH----HHHHHTT-STTT-EEEEE-TTTTTHHHHHHHHHHTT-EEE-EE-TT
T ss_pred cCCCHHHHH----HHHHhcCCCCCCCEEEEECCcCCCChHHHHHHHhCCCeEE-eccCC
Confidence 457877765 455667899999999999987 599999999999999985 78874
No 45
>PF13241 NAD_binding_7: Putative NAD(P)-binding; PDB: 3DFZ_B 1PJT_A 1PJS_A 1PJQ_A 1KYQ_B.
Probab=94.94 E-value=0.028 Score=48.67 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=31.3
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++|++|+|.|.|+||..-++.|.+.||+|+-||..
T Consensus 3 l~l~~~~vlVvGgG~va~~k~~~Ll~~gA~v~vis~~ 39 (103)
T PF13241_consen 3 LDLKGKRVLVVGGGPVAARKARLLLEAGAKVTVISPE 39 (103)
T ss_dssp E--TT-EEEEEEESHHHHHHHHHHCCCTBEEEEEESS
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCc
Confidence 3689999999999999999999999999999877765
No 46
>PLN03129 NADP-dependent malic enzyme; Provisional
Probab=94.86 E-value=0.26 Score=55.50 Aligned_cols=124 Identities=18% Similarity=0.228 Sum_probs=93.3
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHH
Q 010384 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (512)
Q Consensus 323 S~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~ 402 (512)
+..|-..|...|++.+..-.||..-|-=.|++..-. --+.+.|+. .-.|+. +.-.-||-=+..+
T Consensus 244 ~g~eY~~~~defv~av~~~fGp~~~I~~EDf~~~~a--f~iL~ryr~----~i~~Fn----------DDiQGTaaV~lAg 307 (581)
T PLN03129 244 TGEEYDELVDEFMEAVKQRWGPKVLVQFEDFANKNA--FRLLQRYRT----THLCFN----------DDIQGTAAVALAG 307 (581)
T ss_pred chhhHHHhHHHHHHHHHHHhCCccEEehhhcCCccH--HHHHHHhcc----CCCEec----------cccchHHHHHHHH
Confidence 557888999999999999889887777788876432 235677752 112332 2234577777788
Q ss_pred HHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHH-----CCC------EEEEEeCCCceeeCCCC--CCHhh
Q 010384 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA-----YGA------IPVSVSDAKGYLVDEDG--FDYMK 462 (512)
Q Consensus 403 i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e-----~Ga------kVVaVSDs~G~Iydp~G--LDie~ 462 (512)
+-++++-.+.+|+..||+|.|.|..|..+|+.|.+ .|. +=+-+.|++|-|++... ++..+
T Consensus 308 ll~A~r~~g~~l~d~riv~~GAGsAgigia~ll~~~~~~~~Gls~eeA~~~i~~vD~~GLi~~~r~~~l~~~k 380 (581)
T PLN03129 308 LLAALRATGGDLADQRILFAGAGEAGTGIAELIALAMSRQTGISEEEARKRIWLVDSKGLVTKSRKDSLQPFK 380 (581)
T ss_pred HHHHHHHhCCchhhceEEEECCCHHHHHHHHHHHHHHHhhcCCChhhhcCcEEEEcCCCeEeCCCCccChHHH
Confidence 88888888999999999999999999999999987 476 34468999999998654 55444
No 47
>PRK13243 glyoxylate reductase; Reviewed
Probab=94.81 E-value=0.041 Score=57.28 Aligned_cols=37 Identities=16% Similarity=0.226 Sum_probs=33.1
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |.
T Consensus 145 g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~-d~ 181 (333)
T PRK13243 145 GYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYY-SR 181 (333)
T ss_pred ccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEE-CC
Confidence 45789999999999999999999999999999844 54
No 48
>PRK08410 2-hydroxyacid dehydrogenase; Provisional
Probab=94.81 E-value=0.04 Score=56.87 Aligned_cols=36 Identities=31% Similarity=0.371 Sum_probs=32.8
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+|.|+||.|.|+|++|+.+|+.+...|.+|++. |.
T Consensus 141 ~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~-d~ 176 (311)
T PRK08410 141 GEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYY-ST 176 (311)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEE-CC
Confidence 4789999999999999999999999999999865 44
No 49
>PRK14194 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.75 E-value=0.068 Score=55.61 Aligned_cols=53 Identities=23% Similarity=0.267 Sum_probs=44.4
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEeccc-HHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfG-NVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..|++ ++|++.+.+++||+|+|.|-| .||..+|..|.+.|+.|+ |.+++
T Consensus 139 ~PcTp~aii----~lL~~~~i~l~Gk~V~vIG~s~ivG~PmA~~L~~~gatVt-v~~~~ 192 (301)
T PRK14194 139 TPCTPSGCL----RLLEDTCGDLTGKHAVVIGRSNIVGKPMAALLLQAHCSVT-VVHSR 192 (301)
T ss_pred CCCcHHHHH----HHHHHhCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EECCC
Confidence 457888865 455666999999999999996 999999999999999986 66653
No 50
>PRK14176 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.67 E-value=0.071 Score=55.17 Aligned_cols=53 Identities=17% Similarity=0.268 Sum_probs=45.3
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccH-HHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGN-VG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+ +++++.+.+++|++|+|.|-++ ||.-+|.+|.+.||+|. +++++
T Consensus 144 ~PcTp~av~----~ll~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-v~hs~ 197 (287)
T PRK14176 144 VPCTPHGVI----RALEEYGVDIEGKNAVIVGHSNVVGKPMAAMLLNRNATVS-VCHVF 197 (287)
T ss_pred CCCcHHHHH----HHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCEEE-EEecc
Confidence 468888875 4556679999999999999999 99999999999999884 88873
No 51
>PF01488 Shikimate_DH: Shikimate / quinate 5-dehydrogenase; InterPro: IPR006151 This entry represents a domain found in shikimate and quinate dehydrogenases, as well as glutamyl-tRNA reductases. Shikimate 5-dehydrogenase (1.1.1.25 from EC) catalyses the conversion of shikimate to 5-dehydroshikimate [, ]. This reaction is part of the shikimate pathway which is involved in the biosynthesis of aromatic amino acids []. Quinate 5-dehydrogenase catalyses the conversion of quinate to 5-dehydroquinate. This reaction is part of the quinate pathway where quinic acid is exploited as a source of carbon in prokaryotes and microbial eukaryotes. Both the shikimate and quinate pathways share two common pathway metabolites, 3-dehydroquinate and dehydroshikimate. Glutamyl-tRNA reductase (1.2.1.70 from EC) catalyzes the first step of tetrapyrrole biosynthesis in plants, archaea and most bacteria. The dimeric enzyme has an unusual V-shaped architecture where each monomer consists of three domains linked by a long 'spinal' alpha-helix. The central catalytic domain specifically recognises the glutamate moiety of the substrate []. ; PDB: 2EV9_B 2CY0_B 1WXD_A 2D5C_A 1NVT_B 2EGG_A 3PWZ_A 3DOO_A 3DON_A 3FBT_C ....
Probab=94.66 E-value=0.058 Score=48.85 Aligned_cols=38 Identities=34% Similarity=0.463 Sum_probs=35.0
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.++++++|+|.|.|.+|+.++..|.+.|++-|.|.+.
T Consensus 7 ~~~l~~~~vlviGaGg~ar~v~~~L~~~g~~~i~i~nR 44 (135)
T PF01488_consen 7 FGDLKGKRVLVIGAGGAARAVAAALAALGAKEITIVNR 44 (135)
T ss_dssp HSTGTTSEEEEESSSHHHHHHHHHHHHTTSSEEEEEES
T ss_pred cCCcCCCEEEEECCHHHHHHHHHHHHHcCCCEEEEEEC
Confidence 34899999999999999999999999999997778887
No 52
>PRK10792 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.64 E-value=0.073 Score=54.99 Aligned_cols=53 Identities=21% Similarity=0.287 Sum_probs=45.1
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccH-HHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGN-VG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+ +++++.+.+++||+|+|.|-++ ||.-+|.+|.+.||+|+ +++++
T Consensus 139 ~PcTp~av~----~ll~~~~i~l~Gk~vvViGrs~iVG~Pla~lL~~~~atVt-v~hs~ 192 (285)
T PRK10792 139 RPCTPRGIM----TLLERYGIDTYGLNAVVVGASNIVGRPMSLELLLAGCTVT-VCHRF 192 (285)
T ss_pred CCCCHHHHH----HHHHHcCCCCCCCEEEEECCCcccHHHHHHHHHHCCCeEE-EEECC
Confidence 468888875 4566679999999999999999 99999999999999875 77774
No 53
>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]
Probab=94.64 E-value=0.044 Score=57.25 Aligned_cols=37 Identities=27% Similarity=0.411 Sum_probs=33.3
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
+.+|.||||.|.|+|++|+.+|+.|...|.+|++.+=
T Consensus 137 g~el~gkTvGIiG~G~IG~~va~~l~afgm~v~~~d~ 173 (324)
T COG0111 137 GTELAGKTVGIIGLGRIGRAVAKRLKAFGMKVIGYDP 173 (324)
T ss_pred cccccCCEEEEECCCHHHHHHHHHHHhCCCeEEEECC
Confidence 4578999999999999999999999999999996543
No 54
>PLN02928 oxidoreductase family protein
Probab=94.63 E-value=0.048 Score=57.26 Aligned_cols=37 Identities=19% Similarity=0.371 Sum_probs=33.1
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.+|.|+||.|.|+|++|+.+|+.|..+|++|++. |.
T Consensus 154 ~~~l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~-dr 190 (347)
T PLN02928 154 GDTLFGKTVFILGYGAIGIELAKRLRPFGVKLLAT-RR 190 (347)
T ss_pred ccCCCCCEEEEECCCHHHHHHHHHHhhCCCEEEEE-CC
Confidence 35799999999999999999999999999999865 44
No 55
>PRK06932 glycerate dehydrogenase; Provisional
Probab=94.57 E-value=0.045 Score=56.62 Aligned_cols=35 Identities=20% Similarity=0.190 Sum_probs=32.3
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+|.|+||.|.|+|++|+.+|+.|..+|++|++++
T Consensus 143 ~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~ 177 (314)
T PRK06932 143 TDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAE 177 (314)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEEC
Confidence 36899999999999999999999999999999764
No 56
>PRK07232 bifunctional malic enzyme oxidoreductase/phosphotransacetylase; Reviewed
Probab=94.54 E-value=0.24 Score=57.34 Aligned_cols=71 Identities=30% Similarity=0.361 Sum_probs=60.1
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCC--CCCHhh
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMK 462 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~Gak--VVaVSDs~G~Iydp~--GLDie~ 462 (512)
-.-||-=+..++..+++-.|.+++..||+|.|.|..|..+|+.|...|.+ =+-+.|++|-|+... +++..+
T Consensus 161 ~~GTa~v~lA~l~na~~~~~~~~~~~~iv~~GaGaag~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~~~~~k 235 (752)
T PRK07232 161 QHGTAIISAAALLNALELVGKKIEDVKIVVSGAGAAAIACLNLLVALGAKKENIIVCDSKGVIYKGRTEGMDEWK 235 (752)
T ss_pred cchHHHHHHHHHHHHHHHhCCChhhcEEEEECccHHHHHHHHHHHHcCCCcccEEEEcCCCeecCCCcccccHHH
Confidence 34577777888888899889999999999999999999999999999983 345999999999865 466554
No 57
>PRK12861 malic enzyme; Reviewed
Probab=94.38 E-value=0.26 Score=57.18 Aligned_cols=117 Identities=19% Similarity=0.182 Sum_probs=84.4
Q ss_pred HHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHH
Q 010384 328 MRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLIL 407 (512)
Q Consensus 328 eR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal 407 (512)
+.|. .|+..|.+-+|. |-=.|++.. .--.|.+.|+.... -.|+. +.-.-||-=+..++..++
T Consensus 119 d~~v-~~v~a~~~~fg~---i~lED~~~p--~~f~il~~~~~~~~--ipvf~----------DD~qGTa~v~lA~llnal 180 (764)
T PRK12861 119 DKLV-DIIAGLEPTFGG---INLEDIKAP--ECFTVERKLRERMK--IPVFH----------DDQHGTAITVSAAFINGL 180 (764)
T ss_pred HHHH-HHHHHHHhhcCC---ceeeeccCc--hHHHHHHHHHhcCC--CCeec----------cccchHHHHHHHHHHHHH
Confidence 4466 889999976643 555777654 33356677774211 12232 223457777777888888
Q ss_pred HHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCC--CCCHhh
Q 010384 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMK 462 (512)
Q Consensus 408 ~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~Gak--VVaVSDs~G~Iydp~--GLDie~ 462 (512)
+-.+.+|+..||+|.|.|..|..+|+.|.+.|.+ =+-+.|++|-|+... .++..+
T Consensus 181 ~~~gk~l~d~~iv~~GAGaAg~~ia~~l~~~G~~~~~i~~~D~~Gli~~~r~~~l~~~k 239 (764)
T PRK12861 181 KVVGKSIKEVKVVTSGAGAAALACLDLLVDLGLPVENIWVTDIEGVVYRGRTTLMDPDK 239 (764)
T ss_pred HHhCCChhHcEEEEECHhHHHHHHHHHHHHcCCChhhEEEEcCCCeeeCCCcccCCHHH
Confidence 8889999999999999999999999999999983 235999999999765 366544
No 58
>PRK14189 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.31 E-value=0.099 Score=54.02 Aligned_cols=52 Identities=25% Similarity=0.408 Sum_probs=44.1
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHH-HHHHHHHHHHCCCEEEEEeCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKI-AMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNV-G~~aAe~L~e~GakVVaVSDs 448 (512)
..+|..|++ ++|++.+.+++|++|+|.|.|++ |+-+|.+|.+.|++|. ++++
T Consensus 138 ~PcTp~aii----~lL~~~~i~l~Gk~vvViGrs~iVGkPla~lL~~~~atVt-~~hs 190 (285)
T PRK14189 138 RPCTPYGVM----KMLESIGIPLRGAHAVVIGRSNIVGKPMAMLLLQAGATVT-ICHS 190 (285)
T ss_pred cCCCHHHHH----HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EecC
Confidence 468888765 55677799999999999999887 9999999999999986 5655
No 59
>PRK06436 glycerate dehydrogenase; Provisional
Probab=94.23 E-value=0.071 Score=55.15 Aligned_cols=35 Identities=20% Similarity=0.089 Sum_probs=31.9
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
+|.|+||.|.|+|++|+.+|+.|...|.+|++..-
T Consensus 119 ~L~gktvgIiG~G~IG~~vA~~l~afG~~V~~~~r 153 (303)
T PRK06436 119 LLYNKSLGILGYGGIGRRVALLAKAFGMNIYAYTR 153 (303)
T ss_pred CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECC
Confidence 58999999999999999999999999999986653
No 60
>COG0499 SAM1 S-adenosylhomocysteine hydrolase [Coenzyme metabolism]
Probab=94.21 E-value=0.057 Score=57.66 Aligned_cols=52 Identities=27% Similarity=0.290 Sum_probs=41.3
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
-||.+.+-++. +..+.-+.||+++|-|||-||+..|..|..+||+|+ |++.+
T Consensus 190 GtgqS~~DgI~---RaTn~liaGK~vVV~GYG~vGrG~A~~~rg~GA~Vi-VtEvD 241 (420)
T COG0499 190 GTGQSLLDGIL---RATNVLLAGKNVVVAGYGWVGRGIAMRLRGMGARVI-VTEVD 241 (420)
T ss_pred ccchhHHHHHH---hhhceeecCceEEEecccccchHHHHHhhcCCCeEE-EEecC
Confidence 35666655444 334566999999999999999999999999999986 77763
No 61
>PTZ00317 NADP-dependent malic enzyme; Provisional
Probab=94.14 E-value=0.5 Score=53.08 Aligned_cols=123 Identities=20% Similarity=0.250 Sum_probs=91.4
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHH
Q 010384 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (512)
Q Consensus 323 S~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~ 402 (512)
+..|-..|...|+..+.+.. |..-|==.|++..- ---+.+.|+.- -.|+. +.-.-||-=+..+
T Consensus 221 ~g~eY~~f~defv~av~~~~-P~~~Iq~EDf~~~n--af~iL~kyr~~----i~~Fn----------DDiQGTaaV~lAg 283 (559)
T PTZ00317 221 DDDEYYELLDEFMEAVSSRW-PNAVVQFEDFSNNH--CFDLLERYQNK----YRCFN----------DDIQGTGAVIAAG 283 (559)
T ss_pred ChhhHHHHHHHHHHHHHHhC-CCeEEehhhcCCcc--HHHHHHHhccC----CCEec----------ccchhHHHHHHHH
Confidence 56788999999999999766 66656667876542 23466777632 12232 2234567667778
Q ss_pred HHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHH----CCC------EEEEEeCCCceeeCCCC--CCHhh
Q 010384 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG--FDYMK 462 (512)
Q Consensus 403 i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e----~Ga------kVVaVSDs~G~Iydp~G--LDie~ 462 (512)
+-++++-.+.+|+..||++.|.|..|..+|+.|.+ .|. +=+-+.|++|-|++..+ ++..+
T Consensus 284 ll~Alr~~g~~l~d~riv~~GAGsAgiGia~ll~~~m~~~Gls~eeA~~~i~~vD~~GLl~~~r~~~l~~~k 355 (559)
T PTZ00317 284 FLNALKLSGVPPEEQRIVFFGAGSAAIGVANNIADLAAEYGVTREEALKSFYLVDSKGLVTTTRGDKLAKHK 355 (559)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCCccccHHH
Confidence 88888888999999999999999999999999884 787 44568999999998764 55444
No 62
>PRK13529 malate dehydrogenase; Provisional
Probab=94.11 E-value=0.52 Score=52.97 Aligned_cols=118 Identities=20% Similarity=0.274 Sum_probs=88.7
Q ss_pred CHHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHH
Q 010384 323 SDNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFF 402 (512)
Q Consensus 323 S~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~ 402 (512)
+..|...|...|+..+.+.. |..-|==.|++.. .---|.+.|+.- -.|+. +.-.-||-=+..+
T Consensus 219 ~g~eY~~f~defv~av~~~~-P~~~I~~EDf~~~--~af~iL~ryr~~----i~~Fn----------DDiQGTaaV~LAg 281 (563)
T PRK13529 219 RGEEYDEFVDEFVQAVKRRF-PNALLQFEDFAQK--NARRILERYRDE----ICTFN----------DDIQGTGAVTLAG 281 (563)
T ss_pred chHHHHHHHHHHHHHHHHhC-CCeEEehhhcCCc--hHHHHHHHhccC----CCeec----------cccchHHHHHHHH
Confidence 55788889999999999765 6655556777654 233456777641 12332 2234577777788
Q ss_pred HHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHH----CCC------EEEEEeCCCceeeCCCC
Q 010384 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDEDG 457 (512)
Q Consensus 403 i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e----~Ga------kVVaVSDs~G~Iydp~G 457 (512)
+-++++-.|.+|+..||+|.|.|..|..+|+.|.+ .|. +=+-+.|++|-|+....
T Consensus 282 ll~A~r~~g~~l~d~riv~~GAGsAgiGia~ll~~~~~~~Gl~~eeA~~~i~~vD~~GLl~~~r~ 346 (563)
T PRK13529 282 LLAALKITGEPLSDQRIVFLGAGSAGCGIADQIVAAMVREGLSEEEARKRFFMVDRQGLLTDDMP 346 (563)
T ss_pred HHHHHHHhCCChhhcEEEEECCCHHHHHHHHHHHHHHHHcCCChhHhcCeEEEEcCCCeEeCCCC
Confidence 88888988999999999999999999999999987 687 34569999999998765
No 63
>PRK14191 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=94.03 E-value=0.13 Score=53.14 Aligned_cols=52 Identities=23% Similarity=0.314 Sum_probs=44.5
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEeccc-HHHHHHHHHHHHCCCEEEEEeCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfG-NVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+|..||+ ++|++.+.+++||+|+|.|-| .||.-+|.+|.+.||+|. ++++
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrs~~VG~Pla~lL~~~gAtVt-v~hs 189 (285)
T PRK14191 137 VPATPMGVM----RLLKHYHIEIKGKDVVIIGASNIVGKPLAMLMLNAGASVS-VCHI 189 (285)
T ss_pred CCCcHHHHH----HHHHHhCCCCCCCEEEEECCCchhHHHHHHHHHHCCCEEE-EEeC
Confidence 468888875 456667999999999999998 899999999999999975 7766
No 64
>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional
Probab=93.99 E-value=0.08 Score=54.87 Aligned_cols=35 Identities=17% Similarity=0.198 Sum_probs=32.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
++.|+||.|.|+|++|+.+|+.|...|.+|+++.-
T Consensus 133 ~l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~ 167 (312)
T PRK15469 133 HREDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSR 167 (312)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 57899999999999999999999999999987653
No 65
>cd05312 NAD_bind_1_malic_enz NAD(P) binding domain of malic enzyme (ME), subgroup 1. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms, and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. This subfamily consists of eukaryotic and bacterial ME. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH
Probab=93.89 E-value=0.27 Score=50.82 Aligned_cols=68 Identities=19% Similarity=0.221 Sum_probs=55.9
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHC----CC------EEEEEeCCCceeeCCCC-CCHhh
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDEDG-FDYMK 462 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~----Ga------kVVaVSDs~G~Iydp~G-LDie~ 462 (512)
||-=+..++-.+++-.+.+|+..||+|.|.|..|.++|+.|.+. |. +-+-+.|++|-|++... ++..+
T Consensus 4 Ta~V~lAgllnAlk~~g~~l~d~~iv~~GAGsAg~gia~ll~~~~~~~G~~~eeA~~~i~~vD~~Gll~~~r~~l~~~~ 82 (279)
T cd05312 4 TAAVALAGLLAALRITGKPLSDQRILFLGAGSAGIGIADLIVSAMVREGLSEEEARKKIWLVDSKGLLTKDRKDLTPFK 82 (279)
T ss_pred HHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHHcCCChhhccCeEEEEcCCCeEeCCCCcchHHH
Confidence 55556677788888889999999999999999999999999886 87 45569999999998664 54433
No 66
>cd05212 NAD_bind_m-THF_DH_Cyclohyd_like NAD(P) binding domain of methylene-tetrahydrofolate dehydrogenase and methylene-tetrahydrofolate dehydrogenase/cyclohydrolase. NAD(P) binding domains of methylene-tetrahydrofolate dehydrogenase (m-THF DH) and m-THF DH/cyclohydrolase bifunctional enzymes (m-THF DH/cyclohydrolase). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. In addition, most DHs also have an associated cyclohydrolase activity which catalyzes its hydrolysis to N10-formyltetrahydrofolate. m-THF DH is typically found as part of a multifunctional protein in eukaryotes. NADP-dependent m-THF DH in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional
Probab=93.87 E-value=0.23 Score=46.12 Aligned_cols=52 Identities=23% Similarity=0.233 Sum_probs=42.2
Q ss_pred CCchhHHHHHHHHHHHHcCCCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 393 eATG~GV~~~i~eal~~lg~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.+|..| +.+++++.+.+++|++|+|.| ...||.-+|..|.+.|+.|. +++++
T Consensus 9 p~t~~a----~~~ll~~~~~~~~gk~v~VvGrs~~vG~pla~lL~~~gatV~-~~~~~ 61 (140)
T cd05212 9 SPVAKA----VKELLNKEGVRLDGKKVLVVGRSGIVGAPLQCLLQRDGATVY-SCDWK 61 (140)
T ss_pred ccHHHH----HHHHHHHcCCCCCCCEEEEECCCchHHHHHHHHHHHCCCEEE-EeCCC
Confidence 356555 456667789999999999999 47799999999999999986 66653
No 67
>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=93.84 E-value=0.087 Score=56.55 Aligned_cols=35 Identities=17% Similarity=0.131 Sum_probs=32.3
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+|.|+||.|.|+|++|+.+|+.+..+|.+|++..
T Consensus 147 ~~L~gktvGIiG~G~IG~~vA~~~~~fGm~V~~~d 181 (409)
T PRK11790 147 FEVRGKTLGIVGYGHIGTQLSVLAESLGMRVYFYD 181 (409)
T ss_pred ccCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEC
Confidence 46899999999999999999999999999998654
No 68
>PRK14188 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.81 E-value=0.16 Score=52.64 Aligned_cols=51 Identities=25% Similarity=0.395 Sum_probs=43.8
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
..+|..||+. +|++.+.+++||+|+|.| .|.||..+|..|.+.|+.|+ |++
T Consensus 138 ~PcTp~ai~~----ll~~~~i~~~Gk~V~viGrs~~mG~PmA~~L~~~g~tVt-v~~ 189 (296)
T PRK14188 138 VPCTPLGCMM----LLRRVHGDLSGLNAVVIGRSNLVGKPMAQLLLAANATVT-IAH 189 (296)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEEcCCcchHHHHHHHHHhCCCEEE-EEC
Confidence 4689888754 556678899999999999 99999999999999999986 554
No 69
>PF00070 Pyr_redox: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR001327 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes a small NADH binding domain within a larger FAD binding domain described by IPR023753 from INTERPRO. It is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0050660 flavin adenine dinucleotide binding, 0055114 oxidation-reduction process; PDB: 1ZKQ_A 3DGZ_A 1ZDL_A 2R9Z_B 2RAB_A 2A87_B 1M6I_A 2YVG_A 2GR1_A 2GQW_A ....
Probab=93.75 E-value=0.27 Score=40.15 Aligned_cols=53 Identities=26% Similarity=0.384 Sum_probs=41.3
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhc
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQ 473 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~ 473 (512)
+|+|.|.|.+|.-+|..|.+.|.+|. +.+....+. ..+|.+....+.+.-++.
T Consensus 1 ~vvViGgG~ig~E~A~~l~~~g~~vt-li~~~~~~~--~~~~~~~~~~~~~~l~~~ 53 (80)
T PF00070_consen 1 RVVVIGGGFIGIELAEALAELGKEVT-LIERSDRLL--PGFDPDAAKILEEYLRKR 53 (80)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEE-EEESSSSSS--TTSSHHHHHHHHHHHHHT
T ss_pred CEEEECcCHHHHHHHHHHHHhCcEEE-EEeccchhh--hhcCHHHHHHHHHHHHHC
Confidence 68999999999999999999999985 777777776 677876544455544443
No 70
>COG0281 SfcA Malic enzyme [Energy production and conversion]
Probab=93.74 E-value=0.15 Score=55.41 Aligned_cols=65 Identities=26% Similarity=0.314 Sum_probs=56.7
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCE--EEEEeCCCceeeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI--PVSVSDAKGYLVDED 456 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~Gak--VVaVSDs~G~Iydp~ 456 (512)
-.-||-=+..++-.+|+-.|++|+..||++.|.|..|..+++.|...|.+ =|-+.|++|-+|+..
T Consensus 175 qqGTaiv~lA~llnalk~~gk~l~d~kiv~~GAGAAgiaia~~l~~~g~~~~~i~~~D~~G~l~~~r 241 (432)
T COG0281 175 QQGTAIVTLAALLNALKLTGKKLKDQKIVINGAGAAGIAIADLLVAAGVKEENIFVVDRKGLLYDGR 241 (432)
T ss_pred ccHHHHHHHHHHHHHHHHhCCCccceEEEEeCCcHHHHHHHHHHHHhCCCcccEEEEecCCcccCCC
Confidence 34577777788888899999999999999999999999999999999986 456999999999654
No 71
>PRK06719 precorrin-2 dehydrogenase; Validated
Probab=93.69 E-value=0.098 Score=49.02 Aligned_cols=35 Identities=34% Similarity=0.340 Sum_probs=31.9
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+|+|++|+|.|.|+||..-++.|.+.|+.|+=|+
T Consensus 9 l~l~~~~vlVvGGG~va~rka~~Ll~~ga~V~VIs 43 (157)
T PRK06719 9 FNLHNKVVVIIGGGKIAYRKASGLKDTGAFVTVVS 43 (157)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEc
Confidence 57999999999999999999999999999997553
No 72
>cd01079 NAD_bind_m-THF_DH NAD binding domain of methylene-tetrahydrofolate dehydrogenase. The NAD-binding domain of methylene-tetrahydrofolate dehydrogenase (m-THF DH). M-THF is a versatile carrier of activated one-carbon units. The major one-carbon folate donors are N-5 methyltetrahydrofolate, N5,N10-m-THF, and N10-formayltetrahydrofolate. The oxidation of metabolic intermediate m-THF to m-THF requires the enzyme m-THF DH. M-THF DH is a component of an unusual monofunctional enzyme; in eukaryotes, m-THF DH is typically found as part of a multifunctional protein. NADP-dependent m-THF DHs in mammals, birds and yeast are components of a trifunctional enzyme with DH, cyclohydrolase, and synthetase activities. Certain eukaryotic cells also contain homodimeric bifunctional DH/cyclodrolase form. In bacteria, monofunctional DH, as well as bifunctional DH/cyclodrolase are found. In addition, yeast (S. cerevisiae) also express an monofunctional DH. This family contains only the monofunctional
Probab=93.60 E-value=0.18 Score=49.63 Aligned_cols=61 Identities=16% Similarity=0.122 Sum_probs=46.9
Q ss_pred CCCchhHHHHHHHHHH-----HHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCCceee
Q 010384 392 TEATGYGLVFFAQLIL-----ADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (512)
Q Consensus 392 ~eATG~GV~~~i~eal-----~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~G~Iy 453 (512)
..+|..||+..++..= ...+.+++||+|+|.|- ..||.-+|.+|.+.||+|. ++|++|..+
T Consensus 33 ~PCTp~avi~lL~~~~i~~~~~~~~~~l~GK~vvVIGrS~iVGkPla~lL~~~~AtVt-i~~~~~~~~ 99 (197)
T cd01079 33 LPCTPLAIVKILEFLGIYNKILPYGNRLYGKTITIINRSEVVGRPLAALLANDGARVY-SVDINGIQV 99 (197)
T ss_pred cCCCHHHHHHHHHHhCCcccccccCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EEecCcccc
Confidence 4689999876655330 00134899999999995 5689999999999999986 999877665
No 73
>PRK12480 D-lactate dehydrogenase; Provisional
Probab=93.53 E-value=0.11 Score=54.20 Aligned_cols=35 Identities=20% Similarity=0.396 Sum_probs=31.9
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 142 ~~l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d 176 (330)
T PRK12480 142 KPVKNMTVAIIGTGRIGAATAKIYAGFGATITAYD 176 (330)
T ss_pred cccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEe
Confidence 45899999999999999999999999999998654
No 74
>PRK00676 hemA glutamyl-tRNA reductase; Validated
Probab=93.52 E-value=0.18 Score=53.22 Aligned_cols=54 Identities=15% Similarity=0.057 Sum_probs=44.0
Q ss_pred hHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCce
Q 010384 397 YGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGY 451 (512)
Q Consensus 397 ~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~ 451 (512)
-.|.+++..+++.. .++++++|.|.|.|.+|.-+|+.|.+.|++-|.|+..+..
T Consensus 156 vSv~s~av~~~~~~-~~l~~k~vLvIGaGem~~l~a~~L~~~g~~~i~v~nRt~~ 209 (338)
T PRK00676 156 VTIESVVQQELRRR-QKSKKASLLFIGYSEINRKVAYYLQRQGYSRITFCSRQQL 209 (338)
T ss_pred cCHHHHHHHHHHHh-CCccCCEEEEEcccHHHHHHHHHHHHcCCCEEEEEcCCcc
Confidence 34555555566655 5799999999999999999999999999877779998754
No 75
>PRK06718 precorrin-2 dehydrogenase; Reviewed
Probab=93.52 E-value=0.1 Score=50.72 Aligned_cols=35 Identities=37% Similarity=0.505 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|++|+|.|.|.||...++.|.+.|++|+-|+
T Consensus 6 l~l~~k~vLVIGgG~va~~ka~~Ll~~ga~V~VIs 40 (202)
T PRK06718 6 IDLSNKRVVIVGGGKVAGRRAITLLKYGAHIVVIS 40 (202)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCeEEEEc
Confidence 46899999999999999999999999999987554
No 76
>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional
Probab=93.48 E-value=0.1 Score=54.27 Aligned_cols=35 Identities=11% Similarity=0.203 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHH-HCCCEEEEE
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSV 445 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~-e~GakVVaV 445 (512)
+.+|.|+||.|.|+|++|+.+|+.|. ..|.+|++.
T Consensus 140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~ 175 (323)
T PRK15409 140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYN 175 (323)
T ss_pred cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEE
Confidence 44689999999999999999999997 899999854
No 77
>TIGR01470 cysG_Nterm siroheme synthase, N-terminal domain. This model represents a subfamily of CysG N-terminal region-related sequences. All sequences in the seed alignment for this model are N-terminal regions of known or predicted siroheme synthases. The C-terminal region of each is uroporphyrin-III C-methyltransferase (EC 2.1.1.107), which catalyzes the first step committed to the biosynthesis of either siroheme or cobalamin (vitamin B12) rather than protoheme (heme). The region represented by this model completes the process of oxidation and iron insertion to yield siroheme. Siroheme is a cofactor for nitrite and sulfite reductases, so siroheme synthase is CysG of cysteine biosynthesis in some organisms.
Probab=93.26 E-value=0.12 Score=50.46 Aligned_cols=35 Identities=26% Similarity=0.404 Sum_probs=31.4
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|++|+|.|.|.||..-++.|.+.||+|+-||
T Consensus 5 l~l~gk~vlVvGgG~va~rk~~~Ll~~ga~VtVvs 39 (205)
T TIGR01470 5 ANLEGRAVLVVGGGDVALRKARLLLKAGAQLRVIA 39 (205)
T ss_pred EEcCCCeEEEECcCHHHHHHHHHHHHCCCEEEEEc
Confidence 35899999999999999999999999999987444
No 78
>PRK12549 shikimate 5-dehydrogenase; Reviewed
Probab=93.23 E-value=0.23 Score=50.75 Aligned_cols=50 Identities=18% Similarity=0.118 Sum_probs=41.3
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-|+|++.+++. ...++++++|+|.|.|.+|+.++..|.+.|++-|.|.|.
T Consensus 110 D~~G~~~~l~~----~~~~~~~k~vlIlGaGGaaraia~aL~~~G~~~I~I~nR 159 (284)
T PRK12549 110 DWSGFAESFRR----GLPDASLERVVQLGAGGAGAAVAHALLTLGVERLTIFDV 159 (284)
T ss_pred CHHHHHHHHHh----hccCccCCEEEEECCcHHHHHHHHHHHHcCCCEEEEECC
Confidence 46777766653 345688999999999999999999999999866778887
No 79
>PLN02306 hydroxypyruvate reductase
Probab=93.21 E-value=0.12 Score=55.31 Aligned_cols=36 Identities=19% Similarity=0.278 Sum_probs=31.7
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHH-HCCCEEEEEe
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLI-AYGAIPVSVS 446 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~-e~GakVVaVS 446 (512)
+.+|.|+||.|.|+|++|+.+|+.|. .+|++|++..
T Consensus 160 g~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d 196 (386)
T PLN02306 160 GNLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYD 196 (386)
T ss_pred CcCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEEC
Confidence 34689999999999999999999985 8999998653
No 80
>PF01262 AlaDh_PNT_C: Alanine dehydrogenase/PNT, C-terminal domain; InterPro: IPR007698 Alanine dehydrogenases (1.4.1.1 from EC) and pyridine nucleotide transhydrogenase (1.6.1.1 from EC) have been shown to share regions of similarity []. Alanine dehydrogenase catalyzes the NAD-dependent reversible reductive amination of pyruvate into alanine. Pyridine nucleotide transhydrogenase catalyzes the reduction of NADP+ to NADPH with the concomitant oxidation of NADH to NAD+. This enzyme is located in the plasma membrane of prokaryotes and in the inner membrane of the mitochondria of eukaryotes. The transhydrogenation between NADH and NADP is coupled with the translocation of a proton across the membrane. In prokaryotes the enzyme is composed of two different subunits, an alpha chain (gene pntA) and a beta chain (gene pntB), while in eukaryotes it is a single chain protein. The sequence of alanine dehydrogenase from several bacterial species are related with those of the alpha subunit of bacterial pyridine nucleotide transhydrogenase and of the N-terminal half of the eukaryotic enzyme. The two most conserved regions correspond respectively to the N-terminal extremity of these proteins and to a central glycine-rich region which is part of the NAD(H)-binding site. This is a C-terminal domain of alanine dehydrogenases (1.4.1.1 from EC). This domain is also found in the lysine 2-oxoglutarate reductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 1KOL_A 2EEZ_F 1L7E_C 1PTJ_B 1NM5_A 1HZZ_B 1U2G_B 2FSV_A 2FR8_A 1U2D_A ....
Probab=93.20 E-value=0.14 Score=47.94 Aligned_cols=35 Identities=26% Similarity=0.327 Sum_probs=28.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+...+|+|.|.|+||..+++.|..+|++|+.+ |.
T Consensus 17 ~~~p~~vvv~G~G~vg~gA~~~~~~lGa~v~~~-d~ 51 (168)
T PF01262_consen 17 GVPPAKVVVTGAGRVGQGAAEIAKGLGAEVVVP-DE 51 (168)
T ss_dssp EE-T-EEEEESTSHHHHHHHHHHHHTT-EEEEE-ES
T ss_pred CCCCeEEEEECCCHHHHHHHHHHhHCCCEEEec-cC
Confidence 356689999999999999999999999999844 44
No 81
>PRK14179 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=93.14 E-value=0.26 Score=50.93 Aligned_cols=52 Identities=21% Similarity=0.319 Sum_probs=44.6
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+|..||+ ++|++.+.+++||+|+|.|- |.||.-+|..|.+.|+.|+ |+.+
T Consensus 138 ~PcTp~avi----~lL~~~~i~l~Gk~v~vIG~S~ivG~Pla~lL~~~gatVt-v~~s 190 (284)
T PRK14179 138 IPCTPAGIM----EMFREYNVELEGKHAVVIGRSNIVGKPMAQLLLDKNATVT-LTHS 190 (284)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHHCCCEEE-EECC
Confidence 468988875 45566799999999999998 9999999999999999986 6655
No 82
>cd00762 NAD_bind_malic_enz NAD(P) binding domain of malic enzyme. Malic enzyme (ME), a member of the amino acid dehydrogenase (DH)-like domain family, catalyzes the oxidative decarboxylation of L-malate to pyruvate in the presence of cations (typically Mg++ or Mn++) with the concomitant reduction of cofactor NAD+ or NADP+. ME has been found in all organisms and plays important roles in diverse metabolic pathways such as photosynthesis and lipogenesis. This enzyme generally forms homotetramers. The conversion of malate to pyruvate by ME typically involves oxidation of malate to produce oxaloacetate, followed by decarboxylation of oxaloacetate to produce pyruvate and CO2. Amino acid DH-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glut
Probab=93.10 E-value=0.21 Score=50.89 Aligned_cols=68 Identities=18% Similarity=0.143 Sum_probs=55.5
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCE----------EEEEeCCCceeeCCCC-CCHhh
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAI----------PVSVSDAKGYLVDEDG-FDYMK 462 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~Gak----------VVaVSDs~G~Iydp~G-LDie~ 462 (512)
||-=+..++-.+++-.+.+|+..||+|.|.|..|..+|+.|.+.+.+ =+-+.|++|-|++... ++..+
T Consensus 4 TaaV~lAgllnAlk~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~Gls~e~A~~~i~~vD~~Gll~~~r~~l~~~~ 82 (254)
T cd00762 4 TASVAVAGLLAALKVTKKKISEHKVLFNGAGAAALGIANLIVXLXVKEGISKEEACKRIWXVDRKGLLVKNRKETCPNE 82 (254)
T ss_pred hHHHHHHHHHHHHHHhCCChhhcEEEEECcCHHHHHHHHHHHHHHHhcCCCHHHHhccEEEECCCCeEeCCCCccCHHH
Confidence 55555667788888889999999999999999999999999987764 4569999999998764 55433
No 83
>PLN03139 formate dehydrogenase; Provisional
Probab=92.90 E-value=0.15 Score=54.65 Aligned_cols=38 Identities=21% Similarity=0.338 Sum_probs=33.5
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++ .|.+
T Consensus 194 ~~~L~gktVGIVG~G~IG~~vA~~L~afG~~V~~-~d~~ 231 (386)
T PLN03139 194 AYDLEGKTVGTVGAGRIGRLLLQRLKPFNCNLLY-HDRL 231 (386)
T ss_pred CcCCCCCEEEEEeecHHHHHHHHHHHHCCCEEEE-ECCC
Confidence 4579999999999999999999999999999985 4543
No 84
>cd05213 NAD_bind_Glutamyl_tRNA_reduct NADP-binding domain of glutamyl-tRNA reductase. Glutamyl-tRNA reductase catalyzes the conversion of glutamyl-tRNA to glutamate-1-semialdehyde, initiating the synthesis of tetrapyrrole. Whereas tRNAs are generally associated with peptide bond formation in protein translation, here the tRNA activates glutamate in the initiation of tetrapyrrole biosynthesis in archaea, plants and many bacteria. In the first step, activated glutamate is reduced to glutamate-1-semi-aldehyde via the NADPH dependent glutamyl-tRNA reductase. Glutamyl-tRNA reductase forms a V-shaped dimer. Each monomer has 3 domains: an N-terminal catalytic domain, a classic nucleotide binding domain, and a C-terminal dimerization domain. Although the representative structure 1GPJ lacks a bound NADPH, a theoretical binding pocket has been described. (PMID 11172694). Amino acid dehydrogenase (DH)-like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate,
Probab=92.75 E-value=0.28 Score=50.52 Aligned_cols=46 Identities=22% Similarity=0.388 Sum_probs=36.7
Q ss_pred HHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 403 AQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 403 i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++.+...++ ++.|++|+|.|+|.+|+.+++.|...|+..|.|+|.+
T Consensus 166 v~~a~~~~~-~l~~~~V~ViGaG~iG~~~a~~L~~~g~~~V~v~~r~ 211 (311)
T cd05213 166 VELAEKIFG-NLKGKKVLVIGAGEMGELAAKHLAAKGVAEITIANRT 211 (311)
T ss_pred HHHHHHHhC-CccCCEEEEECcHHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 444433333 3889999999999999999999999888777788873
No 85
>PRK14177 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=92.54 E-value=0.38 Score=49.79 Aligned_cols=53 Identities=23% Similarity=0.348 Sum_probs=44.7
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..|++. +|++.+.+++||+|+|.|- ..||.-+|.+|.+.||+|. +++++
T Consensus 139 ~PcTp~avi~----ll~~y~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-~chs~ 192 (284)
T PRK14177 139 LPCTPYGMVL----LLKEYGIDVTGKNAVVVGRSPILGKPMAMLLTEMNATVT-LCHSK 192 (284)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 4689888765 5566799999999999995 6789999999999999875 88874
No 86
>PRK13940 glutamyl-tRNA reductase; Provisional
Probab=92.48 E-value=0.24 Score=53.47 Aligned_cols=52 Identities=10% Similarity=0.217 Sum_probs=41.9
Q ss_pred HHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 398 GLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 398 GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+|.+++-.+++..-.++.|++|.|.|.|..|..+|+.|.+.|++-|.|+..+
T Consensus 163 Sv~~~Av~la~~~~~~l~~kkvlviGaG~~a~~va~~L~~~g~~~I~V~nRt 214 (414)
T PRK13940 163 SVAFSAITLAKRQLDNISSKNVLIIGAGQTGELLFRHVTALAPKQIMLANRT 214 (414)
T ss_pred CHHHHHHHHHHHHhcCccCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4555554555554456899999999999999999999999998877899884
No 87
>PRK07574 formate dehydrogenase; Provisional
Probab=92.43 E-value=0.17 Score=54.15 Aligned_cols=36 Identities=25% Similarity=0.474 Sum_probs=32.2
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+|.|+||.|.|+|++|+.+|+.|...|.+|++. |.
T Consensus 188 ~~L~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~-dr 223 (385)
T PRK07574 188 YDLEGMTVGIVGAGRIGLAVLRRLKPFDVKLHYT-DR 223 (385)
T ss_pred eecCCCEEEEECCCHHHHHHHHHHHhCCCEEEEE-CC
Confidence 3689999999999999999999999999999854 44
No 88
>PRK00258 aroE shikimate 5-dehydrogenase; Reviewed
Probab=92.40 E-value=0.35 Score=48.89 Aligned_cols=51 Identities=25% Similarity=0.442 Sum_probs=39.9
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+.|.+.++++ ..+.++++++|+|.|.|.+|+.++..|.+.|+.-|.|.+.
T Consensus 105 D~~G~~~~l~~---~~~~~~~~k~vlVlGaGg~a~ai~~aL~~~g~~~V~v~~R 155 (278)
T PRK00258 105 DGIGFVRALEE---RLGVDLKGKRILILGAGGAARAVILPLLDLGVAEITIVNR 155 (278)
T ss_pred cHHHHHHHHHh---ccCCCCCCCEEEEEcCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 45666555542 2467899999999999999999999999999544558777
No 89
>PF07991 IlvN: Acetohydroxy acid isomeroreductase, catalytic domain; InterPro: IPR013116 Acetohydroxy acid isomeroreductase catalyses the conversion of acetohydroxy acids into dihydroxy valerates. This reaction is the second in the synthetic pathway of the essential branched side chain amino acids valine and isoleucine.; GO: 0004455 ketol-acid reductoisomerase activity, 0008652 cellular amino acid biosynthetic process, 0055114 oxidation-reduction process; PDB: 1QMG_A 1YVE_J 3FR8_B 3FR7_A 1NP3_C 1YRL_C.
Probab=92.38 E-value=0.17 Score=48.59 Aligned_cols=37 Identities=27% Similarity=0.222 Sum_probs=30.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCce
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGY 451 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~ 451 (512)
|++|+|+|.|||+-|..-|..|.+.|..|+ |....++
T Consensus 2 l~~k~IAViGyGsQG~a~AlNLrDSG~~V~-Vglr~~s 38 (165)
T PF07991_consen 2 LKGKTIAVIGYGSQGHAHALNLRDSGVNVI-VGLREGS 38 (165)
T ss_dssp HCTSEEEEES-SHHHHHHHHHHHHCC-EEE-EEE-TTC
T ss_pred cCCCEEEEECCChHHHHHHHHHHhCCCCEE-EEecCCC
Confidence 589999999999999999999999999987 6666554
No 90
>PF10727 Rossmann-like: Rossmann-like domain; InterPro: IPR019665 This entry represents an NAD/NADP-binding domain with a core Rossmann-type fold, found in an uncharacterised protein family thought to be putative NADP oxidoreductase coenzyme F420-dependent proteins and/or NAD-dependent glycerol-3-phosphate dehydrogenase-like proteins. This Rossmann-fold domain consists of 3-layers alpha/beta/alpha, where the six beta strands are parallel in the order 321456.; PDB: 3DFU_A 3C24_A.
Probab=92.28 E-value=0.082 Score=48.38 Aligned_cols=33 Identities=21% Similarity=0.298 Sum_probs=29.3
Q ss_pred CcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.||.|+|.|+||.++++.|.+.|..|++|...
T Consensus 10 ~l~I~iIGaGrVG~~La~aL~~ag~~v~~v~sr 42 (127)
T PF10727_consen 10 RLKIGIIGAGRVGTALARALARAGHEVVGVYSR 42 (127)
T ss_dssp --EEEEECTSCCCCHHHHHHHHTTSEEEEESSC
T ss_pred ccEEEEECCCHHHHHHHHHHHHCCCeEEEEEeC
Confidence 478999999999999999999999999988765
No 91
>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase. This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.
Probab=92.16 E-value=0.2 Score=55.34 Aligned_cols=36 Identities=28% Similarity=0.338 Sum_probs=32.5
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
+.+|.|+||.|.|+|++|+.+|+.|...|.+|++..
T Consensus 133 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d 168 (525)
T TIGR01327 133 GTELYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYD 168 (525)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 446899999999999999999999999999998653
No 92
>COG0460 ThrA Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=92.00 E-value=0.19 Score=53.00 Aligned_cols=44 Identities=30% Similarity=0.328 Sum_probs=36.5
Q ss_pred CcEEEEecccHHHHHHHHHHHHC----------CCEEEEEeCCCceeeC-CCCCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGYLVD-EDGFD 459 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~----------GakVVaVSDs~G~Iyd-p~GLD 459 (512)
-.+|+|.|||+||+.+++.|.+. ..+|++|+|+++..+. -++.+
T Consensus 3 ~v~v~l~G~G~VG~~~~~il~~~~~~l~~~~g~~i~v~~v~~~~~~~~~~~~~~~ 57 (333)
T COG0460 3 TVKVGLLGLGTVGSGVLEILAEKQEELRKRAGIEIRVVAVADRDGSLVRDLDLLN 57 (333)
T ss_pred eEEEEEEccCchhHHHHHHHHHhHHHHHhhcCCceEEEEEEeccchhcccccccc
Confidence 46899999999999999999984 4689999999998884 44443
No 93
>PRK14183 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.92 E-value=0.37 Score=49.86 Aligned_cols=53 Identities=17% Similarity=0.236 Sum_probs=45.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEeccc-HHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfG-NVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+ ++|++.+.+++||+|+|.|-+ .||.-+|.+|.+.||+|. ++.+.
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~~VG~Pla~lL~~~~AtVt-i~hs~ 190 (281)
T PRK14183 137 VPCTPLGVM----ELLEEYEIDVKGKDVCVVGASNIVGKPMAALLLNANATVD-ICHIF 190 (281)
T ss_pred CCCcHHHHH----HHHHHcCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 468888874 566777999999999999987 899999999999999885 88774
No 94
>PRK14190 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.92 E-value=0.38 Score=49.76 Aligned_cols=52 Identities=23% Similarity=0.286 Sum_probs=43.6
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+|..||+ ++|++.+.+++||+|+|.| +..||.-+|.+|.+.||+|. ++++
T Consensus 138 ~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~atVt-~chs 190 (284)
T PRK14190 138 LPCTPHGIL----ELLKEYNIDISGKHVVVVGRSNIVGKPVGQLLLNENATVT-YCHS 190 (284)
T ss_pred CCCCHHHHH----HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EEeC
Confidence 458888764 5667779999999999999 57799999999999999885 6766
No 95
>PRK13403 ketol-acid reductoisomerase; Provisional
Probab=91.69 E-value=0.25 Score=52.18 Aligned_cols=35 Identities=23% Similarity=0.153 Sum_probs=31.5
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
.|+|+||+|+|+|+.|+..|+.|...|.+|+...+
T Consensus 13 ~LkgKtVGIIG~GsIG~amA~nL~d~G~~ViV~~r 47 (335)
T PRK13403 13 LLQGKTVAVIGYGSQGHAQAQNLRDSGVEVVVGVR 47 (335)
T ss_pred hhCcCEEEEEeEcHHHHHHHHHHHHCcCEEEEEEC
Confidence 58999999999999999999999999999975433
No 96
>PRK14172 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.67 E-value=0.45 Score=49.12 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=44.3
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+ ++|++.+.+++||+|+|.|- ..||.-++.+|.+.||+|. +++++
T Consensus 138 ~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~AtVt-~chs~ 191 (278)
T PRK14172 138 LPCTPNSVI----TLIKSLNIDIEGKEVVVIGRSNIVGKPVAQLLLNENATVT-ICHSK 191 (278)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 467888875 45666799999999999994 6799999999999999874 88874
No 97
>COG0373 HemA Glutamyl-tRNA reductase [Coenzyme metabolism]
Probab=91.66 E-value=0.4 Score=52.08 Aligned_cols=53 Identities=17% Similarity=0.250 Sum_probs=46.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 396 G~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+-++.+++-+.++..-.+|++++|.|.|+|-+|.-+|+.|.+.|.+.|.|+..
T Consensus 158 ~VSi~saAv~lA~~~~~~L~~~~vlvIGAGem~~lva~~L~~~g~~~i~IaNR 210 (414)
T COG0373 158 AVSISSAAVELAKRIFGSLKDKKVLVIGAGEMGELVAKHLAEKGVKKITIANR 210 (414)
T ss_pred ccchHHHHHHHHHHHhcccccCeEEEEcccHHHHHHHHHHHhCCCCEEEEEcC
Confidence 44566777777777777899999999999999999999999999988899988
No 98
>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional
Probab=91.66 E-value=0.24 Score=54.81 Aligned_cols=36 Identities=25% Similarity=0.355 Sum_probs=32.5
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
+.+|.|+||.|.|+|++|+.+|+.|...|++|++..
T Consensus 135 g~~l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d 170 (526)
T PRK13581 135 GVELYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYD 170 (526)
T ss_pred ccccCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEC
Confidence 446899999999999999999999999999998654
No 99
>PF03949 Malic_M: Malic enzyme, NAD binding domain; InterPro: IPR012302 Malic enzymes (malate oxidoreductases) catalyse the oxidative decarboxylation of malate to form pyruvate [], a reaction important in a number of metabolic pathways - e.g. carbon dioxide released from the reaction may be used in sugar production during the Calvin cycle of photosynthesis []. There are 3 forms of the enzyme []: an NAD-dependent form that decarboxylates oxaloacetate; an NAD-dependent form that does not decarboxylate oxalo-acetate; and an NADPH-dependent form []. Other proteins known to be similar to malic enzymes are the Escherichia coli scfA protein; an enzyme from Zea mays (Maize), formerly thought to be cinnamyl-alcohol dehydrogenase []; and the hypothetical Saccharomyces cerevisiae protein YKL029c. Studies on the duck liver malic enzyme reveals that it can be alkylated by bromopyruvate, resulting in the loss of oxidative decarboxylation and the subsequent enhancement of pyruvate reductase activity []. The alkylated form is able to bind NADPH but not L-malate, indicating impaired substrate-or divalent metal ion-binding in the active site []. Sequence analysis has highlighted a cysteine residue as the point of alkylation, suggesting that it may play an important role in the activity of the enzyme [], although it is absent in the sequences from some species. There are three well conserved regions in the enzyme sequences. Two of them seem to be involved in the binding NAD or NADP. The significance of the third one, located in the central part of the enzymes, is not yet known.; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 2DVM_B 1WW8_A 3NV9_A 1PJ2_A 1PJL_B 1GZ3_A 1PJ4_A 1PJ3_C 1EFL_A 1EFK_B ....
Probab=91.63 E-value=0.27 Score=50.21 Aligned_cols=62 Identities=26% Similarity=0.276 Sum_probs=49.9
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHC----CC------EEEEEeCCCceeeCCC
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAY----GA------IPVSVSDAKGYLVDED 456 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~----Ga------kVVaVSDs~G~Iydp~ 456 (512)
||-=+..++-.+++-.+.+|+..||+|.|.|..|..+|+.|.+. |. +=+-+.|++|-|++..
T Consensus 4 TaaV~lAgll~Al~~~g~~l~d~riv~~GAGsAg~gia~ll~~~~~~~G~~~~eA~~~i~lvD~~Gll~~~r 75 (255)
T PF03949_consen 4 TAAVVLAGLLNALRVTGKKLSDQRIVFFGAGSAGIGIARLLVAAMVREGLSEEEARKRIWLVDSKGLLTDDR 75 (255)
T ss_dssp HHHHHHHHHHHHHHHHTS-GGG-EEEEEB-SHHHHHHHHHHHHHHHCTTS-HHHHHTTEEEEETTEEEBTTT
T ss_pred hHHHHHHHHHHHHHHhCCCHHHcEEEEeCCChhHHHHHHHHHHHHHHhcCCHHHHhccEEEEeccceEeccC
Confidence 44445567778888889999999999999999999999999987 98 5566999999999766
No 100
>PRK12862 malic enzyme; Reviewed
Probab=91.59 E-value=0.73 Score=53.58 Aligned_cols=100 Identities=22% Similarity=0.227 Sum_probs=72.6
Q ss_pred CCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHH
Q 010384 349 PSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIA 428 (512)
Q Consensus 349 PApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG 428 (512)
-=.|++.. .--.|.+.|+.... -.|+. +.-.-||-=+..++..+++-.|++++..||+|.|.|..|
T Consensus 140 ~~ED~~~~--~~f~i~~~~~~~~~--ip~f~----------DD~~GTa~v~la~l~~a~~~~~~~~~~~~iv~~GaGaag 205 (763)
T PRK12862 140 NLEDIKAP--ECFYIERELRERMK--IPVFH----------DDQHGTAIIVAAALLNGLKLVGKDIEDVKLVASGAGAAA 205 (763)
T ss_pred eeecccCc--hHHHHHHHHHhcCC--CceEe----------cCcccHHHHHHHHHHHHHHHhCCChhhcEEEEEChhHHH
Confidence 34666543 33456677774321 12232 223457777778888889988999999999999999999
Q ss_pred HHHHHHHHHCCCE--EEEEeCCCceeeCCC--CCCHhh
Q 010384 429 MHVLEKLIAYGAI--PVSVSDAKGYLVDED--GFDYMK 462 (512)
Q Consensus 429 ~~aAe~L~e~Gak--VVaVSDs~G~Iydp~--GLDie~ 462 (512)
..+|+.|...|.+ =+-+.|++|-|+... +++..+
T Consensus 206 ~~~a~~l~~~G~~~~~i~~~D~~G~i~~~r~~~l~~~~ 243 (763)
T PRK12862 206 LACLDLLVSLGVKRENIWVTDIKGVVYEGRTELMDPWK 243 (763)
T ss_pred HHHHHHHHHcCCCcccEEEEcCCCeeeCCCCccccHHH
Confidence 9999999999983 345999999999865 466555
No 101
>PRK14169 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.59 E-value=0.47 Score=49.09 Aligned_cols=53 Identities=19% Similarity=0.379 Sum_probs=44.1
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||. ++|++.+.+++||+|+|.|- ..||.-+|.+|.+.||+|. |+.++
T Consensus 136 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~atVt-ichs~ 189 (282)
T PRK14169 136 VASTPYGIM----ALLDAYDIDVAGKRVVIVGRSNIVGRPLAGLMVNHDATVT-IAHSK 189 (282)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EECCC
Confidence 568988875 45566799999999999995 6689999999999999885 77664
No 102
>PLN02616 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=91.52 E-value=0.52 Score=50.40 Aligned_cols=53 Identities=26% Similarity=0.290 Sum_probs=44.7
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||. ++|++.+.+++||+|+|.|= ..||.-+|.+|.+.+|+|. ++.++
T Consensus 211 ~PCTp~avi----elL~~y~i~l~GK~vvVIGRS~iVGkPLa~LL~~~~ATVT-icHs~ 264 (364)
T PLN02616 211 VPCTPKGCI----ELLHRYNVEIKGKRAVVIGRSNIVGMPAALLLQREDATVS-IVHSR 264 (364)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCeEE-EeCCC
Confidence 468988865 56667799999999999995 6789999999999999875 77764
No 103
>PRK14173 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.49 E-value=0.48 Score=49.14 Aligned_cols=53 Identities=23% Similarity=0.268 Sum_probs=44.1
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||. ++|++.+.+++||+|+|.|- ..||.-+|.+|.+.||+|. ++.+.
T Consensus 135 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-ichs~ 188 (287)
T PRK14173 135 EPCTPAGVV----RLLKHYGIPLAGKEVVVVGRSNIVGKPLAALLLREDATVT-LAHSK 188 (287)
T ss_pred CCCCHHHHH----HHHHHcCCCCCCCEEEEECCCCccHHHHHHHHHHCCCEEE-EeCCC
Confidence 468988875 45567799999999999995 6789999999999999875 77763
No 104
>PRK14170 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.48 E-value=0.47 Score=49.16 Aligned_cols=53 Identities=19% Similarity=0.345 Sum_probs=43.9
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||. ++|++.+.+++||+|+|.|- ..||.-+|.+|.+.||+|. ++.++
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-ichs~ 190 (284)
T PRK14170 137 VPCTPAGII----ELIKSTGTQIEGKRAVVIGRSNIVGKPVAQLLLNENATVT-IAHSR 190 (284)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 468888765 45567799999999999995 5689999999999999885 77774
No 105
>PF03807 F420_oxidored: NADP oxidoreductase coenzyme F420-dependent; InterPro: IPR004455 The function of F420-dependent NADP reductase is the transfer of electrons from reduced coenzyme F420 into an electron transport chain. It catalyses the reduction of F420 with NADP(+) and the reduction of NADP(+) with F420H(2).; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2IZZ_B 2GR9_B 2GRA_B 2GER_C 2AMF_E 2AHR_C 2VQ3_B 2VNS_B 2RCY_D 2YJZ_D ....
Probab=91.43 E-value=0.58 Score=38.95 Aligned_cols=31 Identities=23% Similarity=0.333 Sum_probs=27.5
Q ss_pred EEEEecccHHHHHHHHHHHHCC---CEEEEEeCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYG---AIPVSVSDA 448 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~G---akVVaVSDs 448 (512)
||.|.|+||+|..+++.|.+.| .+|.-+++.
T Consensus 1 kI~iIG~G~mg~al~~~l~~~g~~~~~v~~~~~r 34 (96)
T PF03807_consen 1 KIGIIGAGNMGSALARGLLASGIKPHEVIIVSSR 34 (96)
T ss_dssp EEEEESTSHHHHHHHHHHHHTTS-GGEEEEEEES
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCceeEEeeccC
Confidence 6889999999999999999999 888756566
No 106
>PRK14186 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.40 E-value=0.5 Score=49.24 Aligned_cols=53 Identities=19% Similarity=0.272 Sum_probs=43.7
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+ ++|++.+.+++||+|+|.|- ..||.-+|.+|.+.||+|. ++.+.
T Consensus 138 ~PcTp~aii----~lL~~~~i~l~Gk~vvVIGrS~iVGkPla~lL~~~~atVt-v~hs~ 191 (297)
T PRK14186 138 RSCTPAGVM----RLLRSQQIDIAGKKAVVVGRSILVGKPLALMLLAANATVT-IAHSR 191 (297)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 358888765 55667799999999999995 6689999999999999885 77664
No 107
>PRK14180 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=91.23 E-value=0.52 Score=48.80 Aligned_cols=53 Identities=19% Similarity=0.216 Sum_probs=44.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+. +|++.+.+++||+|+|.|- ..||.-+|.+|.+.||+|+ ++.+.
T Consensus 138 ~PcTp~aii~----lL~~y~i~l~Gk~vvViGrS~~VGkPla~lL~~~~ATVt-~chs~ 191 (282)
T PRK14180 138 ESCTPKGIMT----MLREYGIKTEGAYAVVVGASNVVGKPVSQLLLNAKATVT-TCHRF 191 (282)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EEcCC
Confidence 4688888765 4556799999999999995 6789999999999999885 77763
No 108
>COG0190 FolD 5,10-methylene-tetrahydrofolate dehydrogenase/Methenyl tetrahydrofolate cyclohydrolase [Coenzyme metabolism]
Probab=91.14 E-value=0.43 Score=49.44 Aligned_cols=53 Identities=21% Similarity=0.325 Sum_probs=44.8
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccH-HHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSGK-IAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGN-VG~~aAe~L~e~GakVVaVSDs~ 449 (512)
...|-+|++ .++++.+.++.|++++|.|-+| ||..++.+|...+++|. |+.+.
T Consensus 136 ~PCTp~gi~----~ll~~~~i~l~Gk~~vVVGrS~iVGkPla~lL~~~naTVt-vcHs~ 189 (283)
T COG0190 136 LPCTPAGIM----TLLEEYGIDLRGKNVVVVGRSNIVGKPLALLLLNANATVT-VCHSR 189 (283)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcCcHHHHHHHHhCCCEEE-EEcCC
Confidence 468888865 4566679999999999999776 89999999999999984 88884
No 109
>PLN02516 methylenetetrahydrofolate dehydrogenase (NADP+)
Probab=91.04 E-value=0.56 Score=48.95 Aligned_cols=53 Identities=23% Similarity=0.261 Sum_probs=44.3
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+. +|++.+.+++||+|+|.|= ..||.-+|.+|.+.||+|. ++.++
T Consensus 147 ~PcTp~avi~----lL~~~~i~l~Gk~vvVIGRS~iVGkPla~lL~~~~ATVt-vchs~ 200 (299)
T PLN02516 147 LPCTPKGCLE----LLSRSGIPIKGKKAVVVGRSNIVGLPVSLLLLKADATVT-VVHSR 200 (299)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHHCCCEEE-EeCCC
Confidence 4689888654 4556799999999999995 6689999999999999875 88874
No 110
>TIGR01809 Shik-DH-AROM shikimate-5-dehydrogenase, fungal AROM-type. This model represents a clade of shikimate-5-dehydrogenases found in Corynebacterium, Mycobacteria and fungi. The fungal sequences are pentafunctional proteins known as AroM which contain the central five seven steps in the chorismate biosynthesis pathway. The Corynebacterium and Mycobacterial sequences represent the sole shikimate-5-dehydrogenases in species which otherwise have every enzyme of the chorismate biosynthesis pathway.
Probab=91.02 E-value=0.56 Score=47.74 Aligned_cols=50 Identities=20% Similarity=0.304 Sum_probs=41.0
Q ss_pred chhHHHHHHHHHHHHcC--CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 395 TGYGLVFFAQLILADMN--KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg--~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-++|.+.+++ +.+ .++++++|+|.|.|-+|+.++..|.+.|++-|.|.+.
T Consensus 106 D~~G~~~~l~----~~~~~~~~~~k~vlvlGaGGaarai~~aL~~~G~~~i~I~nR 157 (282)
T TIGR01809 106 DWDGIAGALA----NIGKFEPLAGFRGLVIGAGGTSRAAVYALASLGVTDITVINR 157 (282)
T ss_pred CHHHHHHHHH----hhCCccccCCceEEEEcCcHHHHHHHHHHHHcCCCeEEEEeC
Confidence 4677766665 334 2588999999999999999999999999877778877
No 111
>PRK14171 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.96 E-value=0.58 Score=48.58 Aligned_cols=54 Identities=15% Similarity=0.248 Sum_probs=44.6
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCCc
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKG 450 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~G 450 (512)
..+|..||. ++|++.+.+++||+|+|.|- ..||.-++.+|.+.||+|. ++.++.
T Consensus 139 ~PcTp~av~----~lL~~y~i~l~GK~vvViGrS~iVGkPla~lL~~~~ATVt-ichs~T 193 (288)
T PRK14171 139 IPCTALGCL----AVIKKYEPNLTGKNVVIIGRSNIVGKPLSALLLKENCSVT-ICHSKT 193 (288)
T ss_pred cCCCHHHHH----HHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCCC
Confidence 468888864 55667799999999999995 6689999999999999885 888743
No 112
>PRK14178 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.94 E-value=0.5 Score=48.85 Aligned_cols=53 Identities=21% Similarity=0.334 Sum_probs=44.5
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEeccc-HHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGSG-KIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfG-NVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||.. +|++.+.+++|++|+|.|-+ .||..+|.+|...|++|. +++++
T Consensus 132 ~PcTp~av~~----ll~~~~i~l~Gk~V~ViGrs~~vGrpla~lL~~~~atVt-v~hs~ 185 (279)
T PRK14178 132 APCTPNGIMT----LLHEYKISIAGKRAVVVGRSIDVGRPMAALLLNADATVT-ICHSK 185 (279)
T ss_pred CCCCHHHHHH----HHHHcCCCCCCCEEEEECCCccccHHHHHHHHhCCCeeE-EEecC
Confidence 4688888754 56667999999999999998 899999999999999885 66663
No 113
>PRK12548 shikimate 5-dehydrogenase; Provisional
Probab=90.82 E-value=0.64 Score=47.45 Aligned_cols=49 Identities=22% Similarity=0.332 Sum_probs=39.8
Q ss_pred hhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 396 G~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|.+.+++ ..+.++++++++|.|.|-+|+.++..|++.|++-|.|.+.
T Consensus 110 ~~G~~~~l~----~~~~~~~~k~vlI~GAGGagrAia~~La~~G~~~V~I~~R 158 (289)
T PRK12548 110 GLGFVRNLR----EHGVDVKGKKLTVIGAGGAATAIQVQCALDGAKEITIFNI 158 (289)
T ss_pred HHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 667666554 3456789999999999999999999999999985557776
No 114
>COG1648 CysG Siroheme synthase (precorrin-2 oxidase/ferrochelatase domain) [Coenzyme metabolism]
Probab=90.81 E-value=0.37 Score=47.61 Aligned_cols=37 Identities=30% Similarity=0.422 Sum_probs=34.8
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++|++|+|.|-|.||..=|+.|++.|++|+-||+.
T Consensus 8 ~~l~~k~VlvvGgG~va~rKa~~ll~~ga~v~Vvs~~ 44 (210)
T COG1648 8 LDLEGKKVLVVGGGSVALRKARLLLKAGADVTVVSPE 44 (210)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHhcCCEEEEEcCC
Confidence 4789999999999999999999999999999988887
No 115
>PRK14166 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.79 E-value=0.61 Score=48.29 Aligned_cols=53 Identities=23% Similarity=0.317 Sum_probs=44.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+. +|++.+.+++||+|+|.|- ..||.-+|.+|.+.||+|. ++.+.
T Consensus 137 ~PcTp~avi~----lL~~y~i~l~Gk~vvVvGrS~iVGkPla~lL~~~~atVt-~chs~ 190 (282)
T PRK14166 137 LPCTPLGVMK----LLKAYEIDLEGKDAVIIGASNIVGRPMATMLLNAGATVS-VCHIK 190 (282)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 4688888765 4556799999999999995 6789999999999999885 88774
No 116
>PRK08605 D-lactate dehydrogenase; Validated
Probab=90.75 E-value=0.32 Score=50.74 Aligned_cols=37 Identities=30% Similarity=0.561 Sum_probs=31.4
Q ss_pred CCCCCCcEEEEecccHHHHHHHHHH-HHCCCEEEEEeCC
Q 010384 411 NKELKGLRCVVSGSGKIAMHVLEKL-IAYGAIPVSVSDA 448 (512)
Q Consensus 411 g~~L~GkrVaIQGfGNVG~~aAe~L-~e~GakVVaVSDs 448 (512)
+.+|.|+||.|.|+|++|+.+|+.| ...|.+|++. |.
T Consensus 141 ~~~l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~-d~ 178 (332)
T PRK08605 141 SRSIKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAY-DP 178 (332)
T ss_pred cceeCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEE-CC
Confidence 3578999999999999999999999 4579998854 44
No 117
>PRK05472 redox-sensing transcriptional repressor Rex; Provisional
Probab=90.73 E-value=0.51 Score=45.86 Aligned_cols=53 Identities=17% Similarity=0.226 Sum_probs=42.0
Q ss_pred hhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHH--HCCCEEEEEeCCC
Q 010384 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLI--AYGAIPVSVSDAK 449 (512)
Q Consensus 396 G~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~--e~GakVVaVSDs~ 449 (512)
||=|.+.++.+-+.++.. ...+|+|.|+|++|..+++.+. +.|.+++++.|.+
T Consensus 65 gy~v~~l~~~~~~~l~~~-~~~rV~IIGaG~iG~~l~~~~~~~~~g~~ivgv~D~d 119 (213)
T PRK05472 65 GYNVEELLEFIEKILGLD-RTWNVALVGAGNLGRALLNYNGFEKRGFKIVAAFDVD 119 (213)
T ss_pred CeeHHHHHHHHHHHhCCC-CCcEEEEECCCHHHHHHHHhhhcccCCcEEEEEEECC
Confidence 677777776666666665 5689999999999999998643 5799999999864
No 118
>PRK14187 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.69 E-value=0.62 Score=48.50 Aligned_cols=53 Identities=15% Similarity=0.222 Sum_probs=44.6
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+ ++|++.+.+++||+|+|.|- ..||.-++.+|.+.||+|. +++++
T Consensus 140 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~aTVt-~chs~ 193 (294)
T PRK14187 140 IPCTPKGCL----YLIKTITRNLSGSDAVVIGRSNIVGKPMACLLLGENCTVT-TVHSA 193 (294)
T ss_pred cCcCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhhCCCEEE-EeCCC
Confidence 357888875 55667799999999999995 6689999999999999985 88874
No 119
>PF03447 NAD_binding_3: Homoserine dehydrogenase, NAD binding domain; InterPro: IPR005106 Bacteria, plants and fungi metabolise aspartic acid to produce four amino acids - lysine, threonine, methionine and isoleucine - in a series of reactions known as the aspartate pathway. Additionally, several important metabolic intermediates are produced by these reactions, such as diaminopimelic acid, an essential component of bacterial cell wall biosynthesis, and dipicolinic acid, which is involved in sporulation in Gram-positive bacteria. Members of the animal kingdom do not posses this pathway and must therefore acquire these essential amino acids through their diet. Research into improving the metabolic flux through this pathway has the potential to increase the yield of the essential amino acids in important crops, thus improving their nutritional value. Additionally, since the enzymes are not present in animals, inhibitors of them are promising targets for the development of novel antibiotics and herbicides. For more information see []. Homoserine dehydrogenase (1.1.1.3 from EC) catalyses the third step in the aspartate pathway; theNAD(P)-dependent reduction of aspartate beta-semialdehyde into homoserine [, ]. Homoserine is an intermediate in the biosynthesis of threonine, isoleucine, and methionine. The enzyme can be found in a monofunctional form, in some bacteria and yeast, or a bifunctional form consisting of an N-terminal aspartokinase domain and a C-terminal homoserine dehydrogenase domain, as found in bacteria such as Escherichia coli and in plants. Structural analysis of the yeast monofunctional enzyme (P31116 from SWISSPROT) indicates that the enzyme is a dimer composed of three distinct regions; an N-terminal nucleotide-binding domain, a short central dimerisation region, and a C-terminal catalytic domain []. The N-terminal domain forms a modified Rossman fold, while the catalytic domain forms a novel alpha-beta mixed sheet. This entry represents the NAD(P)-binding domain of aspartate and homoserine dehydrogenase. Asparate dehydrogenase (1.4.1.21 from EC) is strictly specific for L-aspartate as substrate and catalyses the first step in NAD biosynthesis from aspartate. The enzyme has a higher affinity for NAD+ than NADP+ []. Note that the C terminus of the protein contributes a helix to this domain that is not covered by this model.; GO: 0016491 oxidoreductase activity, 0050661 NADP binding, 0055114 oxidation-reduction process; PDB: 3ING_A 3MTJ_A 3DO5_A 3JSA_A 3C8M_A 1J5P_A 1H2H_A 2EJW_E 1TVE_A 1EBU_D ....
Probab=90.56 E-value=0.25 Score=43.12 Aligned_cols=33 Identities=30% Similarity=0.435 Sum_probs=27.2
Q ss_pred cccHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCC
Q 010384 423 GSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDED 456 (512)
Q Consensus 423 GfGNVG~~aAe~L~e~----GakVVaVSDs~G~Iydp~ 456 (512)
|+|+||+.+++.|.+. +.+|++|+|++ .+.+++
T Consensus 1 G~G~VG~~l~~~l~~~~~~~~~~v~~v~~~~-~~~~~~ 37 (117)
T PF03447_consen 1 GFGNVGRGLLEQLKEQQERIDLEVVGVADRS-MLISKD 37 (117)
T ss_dssp --SHHHHHHHHHHHHTHHHCEEEEEEEEESS-EEEETT
T ss_pred CCCHHHHHHHHHHHhCcccCCEEEEEEEECC-chhhhh
Confidence 8999999999999986 78999999999 666555
No 120
>TIGR01035 hemA glutamyl-tRNA reductase. This enzyme, together with glutamate-1-semialdehyde-2,1-aminomutase (TIGR00713), leads to the production of delta-amino-levulinic acid from Glu-tRNA.
Probab=90.56 E-value=0.61 Score=50.13 Aligned_cols=38 Identities=21% Similarity=0.413 Sum_probs=32.1
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.++.|++|+|.|+|.+|+.+++.|...|+.-|.|.+.+
T Consensus 176 ~~l~~~~VlViGaG~iG~~~a~~L~~~G~~~V~v~~rs 213 (417)
T TIGR01035 176 GSLKGKKALLIGAGEMGELVAKHLLRKGVGKILIANRT 213 (417)
T ss_pred CCccCCEEEEECChHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 35889999999999999999999999995445577763
No 121
>PRK00045 hemA glutamyl-tRNA reductase; Reviewed
Probab=90.44 E-value=0.63 Score=49.98 Aligned_cols=37 Identities=24% Similarity=0.466 Sum_probs=32.5
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++.|++|+|.|.|.+|+.+++.|...|+.-|.|++.+
T Consensus 179 ~~~~~~vlViGaG~iG~~~a~~L~~~G~~~V~v~~r~ 215 (423)
T PRK00045 179 DLSGKKVLVIGAGEMGELVAKHLAEKGVRKITVANRT 215 (423)
T ss_pred CccCCEEEEECchHHHHHHHHHHHHCCCCeEEEEeCC
Confidence 6899999999999999999999999998555677763
No 122
>PF00899 ThiF: ThiF family; InterPro: IPR000594 Ubiquitin-activating enzyme (E1 enzyme) [, ] activates ubiquitin by first adenylating with ATP its C-terminal glycine residue and thereafter linking this residue to the side chain of a cysteine residue in E1, yielding an ubiquitin-E1 thiolester and free AMP. Later the ubiquitin moiety is transferred to a cysteine residue on one of the many forms of ubiquitin- conjugating enzymes (E2). The family of ubiquitin-activating enzymes shares in its catalytic domain significant similarity with a large family of NAD/FAD-binding proteins. This domain is based on the common NAD/FAD-binding fold and finds members of several families, including UBA ubiquitin activating enzymes; the hesA/moeB/thiF family; NADH peroxidases; the LDH family; sarcosin oxidase; phytoene dehydrogenases; alanine dehydrogenases; hydroxyacyl-CoA dehydrogenases and many other NAD/FAD dependent dehydrogenases and oxidases.; GO: 0003824 catalytic activity; PDB: 1ZKM_D 1ZUD_3 1ZFN_D 1R4M_G 2NVU_A 1R4N_C 3DBR_A 3DBH_C 3DBL_G 1YOV_A ....
Probab=90.39 E-value=0.26 Score=44.15 Aligned_cols=34 Identities=21% Similarity=0.381 Sum_probs=29.8
Q ss_pred CcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.+||+|.|.|.||..+|+.|+..|..-+.|.|.+
T Consensus 2 ~~~v~iiG~G~vGs~va~~L~~~Gv~~i~lvD~d 35 (135)
T PF00899_consen 2 NKRVLIIGAGGVGSEVAKNLARSGVGKITLVDDD 35 (135)
T ss_dssp T-EEEEESTSHHHHHHHHHHHHHTTSEEEEEESS
T ss_pred CCEEEEECcCHHHHHHHHHHHHhCCCceeecCCc
Confidence 5799999999999999999999999777788864
No 123
>PRK14027 quinate/shikimate dehydrogenase; Provisional
Probab=90.35 E-value=1.1 Score=45.93 Aligned_cols=50 Identities=20% Similarity=0.073 Sum_probs=41.6
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-|+|.+.++++ ...++++++|+|.|.|-+|+.++-.|.+.|++-|.|.+.
T Consensus 110 D~~Gf~~~L~~----~~~~~~~k~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 159 (283)
T PRK14027 110 DVSGFGRGMEE----GLPNAKLDSVVQVGAGGVGNAVAYALVTHGVQKLQVADL 159 (283)
T ss_pred CHHHHHHHHHh----cCcCcCCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEcC
Confidence 36777777653 344678999999999999999999999999987788887
No 124
>TIGR02356 adenyl_thiF thiazole biosynthesis adenylyltransferase ThiF, E. coli subfamily. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with the Escherichia. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the more widely distributed clade of ThiF proteins such found in E. coli.
Probab=90.33 E-value=0.56 Score=45.44 Aligned_cols=37 Identities=16% Similarity=0.229 Sum_probs=33.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 18 kl~~~~VlviG~GglGs~ia~~La~~Gv~~i~lvD~d 54 (202)
T TIGR02356 18 RLLNSHVLIIGAGGLGSPAALYLAGAGVGTIVIVDDD 54 (202)
T ss_pred HhcCCCEEEECCCHHHHHHHHHHHHcCCCeEEEecCC
Confidence 4788999999999999999999999998666688875
No 125
>PRK12475 thiamine/molybdopterin biosynthesis MoeB-like protein; Provisional
Probab=90.27 E-value=0.36 Score=50.71 Aligned_cols=38 Identities=16% Similarity=0.325 Sum_probs=34.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCc
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKG 450 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G 450 (512)
.|++++|+|.|.|.+|..+|+.|++.|..-++|.|.+-
T Consensus 21 ~L~~~~VlIiG~GglGs~va~~La~aGvg~i~lvD~D~ 58 (338)
T PRK12475 21 KIREKHVLIVGAGALGAANAEALVRAGIGKLTIADRDY 58 (338)
T ss_pred hhcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCCc
Confidence 47889999999999999999999999987777888863
No 126
>PRK12749 quinate/shikimate dehydrogenase; Reviewed
Probab=90.24 E-value=0.77 Score=47.15 Aligned_cols=51 Identities=16% Similarity=0.225 Sum_probs=42.0
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
-|+|.+.+++ ..+.++++++|+|.|.|-.++.++-.|...|++-|.|.+.+
T Consensus 107 D~~Gf~~~l~----~~~~~~~~k~vlvlGaGGaarAi~~~l~~~g~~~i~i~nRt 157 (288)
T PRK12749 107 DGTGHIRAIK----ESGFDIKGKTMVLLGAGGASTAIGAQGAIEGLKEIKLFNRR 157 (288)
T ss_pred CHHHHHHHHH----hcCCCcCCCEEEEECCcHHHHHHHHHHHHCCCCEEEEEeCC
Confidence 3667666654 45778999999999999999999999999998777788874
No 127
>PRK02472 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=90.15 E-value=0.46 Score=50.38 Aligned_cols=36 Identities=28% Similarity=0.294 Sum_probs=32.2
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+++|++|.|.|.|..|..+|+.|++.|++|+ ++|.+
T Consensus 2 ~~~~k~v~v~G~g~~G~s~a~~l~~~G~~V~-~~d~~ 37 (447)
T PRK02472 2 EYQNKKVLVLGLAKSGYAAAKLLHKLGANVT-VNDGK 37 (447)
T ss_pred CcCCCEEEEEeeCHHHHHHHHHHHHCCCEEE-EEcCC
Confidence 4689999999999999999999999999986 77863
No 128
>PRK14182 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=90.15 E-value=0.77 Score=47.57 Aligned_cols=53 Identities=19% Similarity=0.281 Sum_probs=43.8
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+. +|++.+.+++||+|+|.|- ..||.-+|.+|.+.+|+|. ++.++
T Consensus 137 ~PcTp~avi~----ll~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~AtVt-ichs~ 190 (282)
T PRK14182 137 RPCTPAGVMR----MLDEARVDPKGKRALVVGRSNIVGKPMAMMLLERHATVT-IAHSR 190 (282)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcchHHHHHHHHHCCCEEE-EeCCC
Confidence 4688888754 5566799999999999995 6689999999999999875 77774
No 129
>TIGR00465 ilvC ketol-acid reductoisomerase. This is the second enzyme in the parallel isoleucine-valine biosynthetic pathway
Probab=90.08 E-value=0.48 Score=49.33 Aligned_cols=35 Identities=20% Similarity=0.119 Sum_probs=30.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
|+|++|+|+|+||.|...|+.|.+.|.+|+...+.
T Consensus 1 l~~kkIgiIG~G~mG~AiA~~L~~sG~~Viv~~~~ 35 (314)
T TIGR00465 1 LKGKTVAIIGYGSQGHAQALNLRDSGLNVIVGLRK 35 (314)
T ss_pred CCcCEEEEEeEcHHHHHHHHHHHHCCCeEEEEECc
Confidence 57999999999999999999999999887644443
No 130
>cd00757 ThiF_MoeB_HesA_family ThiF_MoeB_HesA. Family of E1-like enzymes involved in molybdopterin and thiamine biosynthesis family. The common reaction mechanism catalyzed by MoeB and ThiF, like other E1 enzymes, begins with a nucleophilic attack of the C-terminal carboxylate of MoaD and ThiS, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS. MoeB, as the MPT synthase (MoaE/MoaD complex) sulfurase, is involved in the biosynthesis of the molybdenum cofactor, a derivative of the tricyclic pterin, molybdopterin (MPT). ThiF catalyzes the adenylation of ThiS, as part of the biosynthesis pathway of thiamin pyrophosphate (vitamin B1).
Probab=89.88 E-value=0.42 Score=46.91 Aligned_cols=37 Identities=30% Similarity=0.396 Sum_probs=33.1
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|-+|..+|+.|+..|..-+.|.|.+
T Consensus 18 ~L~~~~VlivG~GglGs~va~~La~~Gvg~i~lvD~D 54 (228)
T cd00757 18 KLKNARVLVVGAGGLGSPAAEYLAAAGVGKLGLVDDD 54 (228)
T ss_pred HHhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999999999999999999999998777788864
No 131
>PRK09310 aroDE bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase protein; Reviewed
Probab=89.85 E-value=0.81 Score=50.17 Aligned_cols=50 Identities=22% Similarity=0.298 Sum_probs=40.8
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
--|+|+..+++ ..+.++++++++|.|.|.+|+.++..|.+.|+.|+ |.|.
T Consensus 314 TD~~G~~~~l~----~~~~~~~~k~vlIiGaGgiG~aia~~L~~~G~~V~-i~~R 363 (477)
T PRK09310 314 TDGEGLFSLLK----QKNIPLNNQHVAIVGAGGAAKAIATTLARAGAELL-IFNR 363 (477)
T ss_pred cCHHHHHHHHH----hcCCCcCCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 34677766654 45778899999999999999999999999999765 6555
No 132
>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]
Probab=89.80 E-value=0.43 Score=50.04 Aligned_cols=38 Identities=24% Similarity=0.390 Sum_probs=33.5
Q ss_pred cCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 410 lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++.++.|||+.|.|+|.+|+.+|+.+.-.|.+|+ ..|.
T Consensus 140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~-y~~~ 177 (324)
T COG1052 140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVL-YYDR 177 (324)
T ss_pred cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEE-EECC
Confidence 4678999999999999999999999999999997 4443
No 133
>PRK05479 ketol-acid reductoisomerase; Provisional
Probab=89.77 E-value=0.5 Score=49.80 Aligned_cols=32 Identities=22% Similarity=0.183 Sum_probs=29.6
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEE
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVS 444 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVa 444 (512)
.|+|++|+|+|+|++|...|+.|.+.|.+|+.
T Consensus 14 ~L~gktIgIIG~GsmG~AlA~~L~~sG~~Vvv 45 (330)
T PRK05479 14 LIKGKKVAIIGYGSQGHAHALNLRDSGVDVVV 45 (330)
T ss_pred hhCCCEEEEEeeHHHHHHHHHHHHHCCCEEEE
Confidence 47899999999999999999999999998874
No 134
>PRK15116 sulfur acceptor protein CsdL; Provisional
Probab=89.70 E-value=0.41 Score=49.04 Aligned_cols=36 Identities=19% Similarity=0.257 Sum_probs=31.3
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|++++|+|.|.|-||.++|+.|++.|..=+.|.|.+
T Consensus 28 L~~s~VlVvG~GGVGs~vae~Lar~GVg~itLiD~D 63 (268)
T PRK15116 28 FADAHICVVGIGGVGSWAAEALARTGIGAITLIDMD 63 (268)
T ss_pred hcCCCEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678999999999999999999999996555677764
No 135
>TIGR00518 alaDH alanine dehydrogenase. The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.
Probab=89.68 E-value=0.92 Score=48.12 Aligned_cols=34 Identities=15% Similarity=0.206 Sum_probs=30.0
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.+++|+|.|+|.+|+.+++.|..+|++|+ +.|.
T Consensus 165 l~~~~VlViGaG~vG~~aa~~a~~lGa~V~-v~d~ 198 (370)
T TIGR00518 165 VEPGDVTIIGGGVVGTNAAKMANGLGATVT-ILDI 198 (370)
T ss_pred CCCceEEEEcCCHHHHHHHHHHHHCCCeEE-EEEC
Confidence 567889999999999999999999999865 5665
No 136
>PLN02520 bifunctional 3-dehydroquinate dehydratase/shikimate dehydrogenase
Probab=89.47 E-value=0.84 Score=50.70 Aligned_cols=54 Identities=20% Similarity=0.123 Sum_probs=43.3
Q ss_pred CchhHHHHHHHHHHHH------cCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 394 ATGYGLVFFAQLILAD------MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~------lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
--++|++.+++..+.. .+.++++++|+|.|.|.+|+.++..|.+.|++|+ |.+.
T Consensus 351 TD~~G~~~~l~~~~~~~~~~~~~~~~~~~k~vlIlGaGGagrAia~~L~~~G~~V~-i~nR 410 (529)
T PLN02520 351 TDYIGAISAIEDGLRASGSSPASGSPLAGKLFVVIGAGGAGKALAYGAKEKGARVV-IANR 410 (529)
T ss_pred ccHHHHHHHHHhhhcccccccccccCCCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEcC
Confidence 3478888888754422 2457899999999999999999999999999765 7776
No 137
>PRK14193 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=89.26 E-value=0.93 Score=46.98 Aligned_cols=53 Identities=23% Similarity=0.226 Sum_probs=43.7
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHH--CCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA--YGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e--~GakVVaVSDs~ 449 (512)
..+|..||... |++.+.+++||+|+|.|- ..||.-+|.+|.+ .+|+| +|+.++
T Consensus 138 ~PcTp~av~~l----l~~~~i~l~Gk~vvViGrS~~VGkPla~lL~~~~~~atV-tvchs~ 193 (284)
T PRK14193 138 LPCTPRGIVHL----LRRYDVELAGAHVVVIGRGVTVGRPIGLLLTRRSENATV-TLCHTG 193 (284)
T ss_pred CCCCHHHHHHH----HHHhCCCCCCCEEEEECCCCcchHHHHHHHhhccCCCEE-EEeCCC
Confidence 46898887554 556799999999999994 6799999999998 78987 488874
No 138
>PRK14982 acyl-ACP reductase; Provisional
Probab=89.18 E-value=0.99 Score=47.82 Aligned_cols=54 Identities=20% Similarity=0.174 Sum_probs=43.3
Q ss_pred CchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHH-CCC-EEEEEeCC
Q 010384 394 ATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA-YGA-IPVSVSDA 448 (512)
Q Consensus 394 ATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e-~Ga-kVVaVSDs 448 (512)
.|.+-....++.+.+.++.++++++|+|.|. |.+|+.+++.|.+ .|+ +++ +.+.
T Consensus 133 ~T~~ll~~~V~la~~~lg~~l~~k~VLVtGAtG~IGs~lar~L~~~~gv~~li-lv~R 189 (340)
T PRK14982 133 HTAYVICRQVEQNAPRLGIDLSKATVAVVGATGDIGSAVCRWLDAKTGVAELL-LVAR 189 (340)
T ss_pred hHHHHHHHHHHHhHHHhccCcCCCEEEEEccChHHHHHHHHHHHhhCCCCEEE-EEcC
Confidence 4666666677777888889999999999998 8999999999986 465 554 5555
No 139
>PRK14106 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.10 E-value=0.59 Score=49.62 Aligned_cols=36 Identities=33% Similarity=0.509 Sum_probs=32.2
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++++++|+|.|.|.+|..+|+.|++.|+.|+ ++|.+
T Consensus 2 ~~~~k~v~iiG~g~~G~~~A~~l~~~G~~V~-~~d~~ 37 (450)
T PRK14106 2 ELKGKKVLVVGAGVSGLALAKFLKKLGAKVI-LTDEK 37 (450)
T ss_pred CcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 5789999999999999999999999999986 66663
No 140
>PRK04690 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=89.04 E-value=0.53 Score=51.09 Aligned_cols=35 Identities=20% Similarity=0.115 Sum_probs=32.0
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+.|++|+|.|+|.-|..+|++|.+.|++|+ ++|.+
T Consensus 6 ~~~~~v~v~G~G~sG~~~~~~l~~~g~~v~-~~d~~ 40 (468)
T PRK04690 6 LEGRRVALWGWGREGRAAYRALRAHLPAQA-LTLFC 40 (468)
T ss_pred cCCCEEEEEccchhhHHHHHHHHHcCCEEE-EEcCC
Confidence 578999999999999999999999999986 78863
No 141
>PRK01438 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=88.88 E-value=0.68 Score=49.85 Aligned_cols=39 Identities=31% Similarity=0.480 Sum_probs=33.6
Q ss_pred HcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 409 DMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 409 ~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.+.++++++|+|.|.|.+|..+|+.|.+.|.+|+ ++|.
T Consensus 9 ~~~~~~~~~~v~viG~G~~G~~~A~~L~~~G~~V~-~~d~ 47 (480)
T PRK01438 9 SWHSDWQGLRVVVAGLGVSGFAAADALLELGARVT-VVDD 47 (480)
T ss_pred hcccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeC
Confidence 34556789999999999999999999999999975 6665
No 142
>PRK08289 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=88.88 E-value=3.3 Score=45.92 Aligned_cols=97 Identities=23% Similarity=0.237 Sum_probs=64.6
Q ss_pred CCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHHHHHHHHc-C--CCCCCcEEEEecccHHH
Q 010384 352 EMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFAQLILADM-N--KELKGLRCVVSGSGKIA 428 (512)
Q Consensus 352 DvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i~eal~~l-g--~~L~GkrVaIQGfGNVG 428 (512)
|++...-|++-++-+|... ..|..+-.++++-|... + ...+.++|+|=|||-+|
T Consensus 83 ~l~~~~~d~g~l~~~~~~~-----------------------~~~~~~~~~~~~~l~~~~~~~~~~~~~~V~InGFGRIG 139 (477)
T PRK08289 83 DLGPARVDIGKLAVKYKAE-----------------------GDGSDVEAFVAEELADAVGGADDIEPRDVVLYGFGRIG 139 (477)
T ss_pred CCCcccccHHHHHHHHhhc-----------------------cCCCcHHHHHHHHHhhhhcCCCCCCCceEEEECCCHHH
Confidence 4455555777777777411 11233445555555432 2 23668899999999999
Q ss_pred HHHHHHHHHC-----CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 429 MHVLEKLIAY-----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 429 ~~aAe~L~e~-----GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
+.+++.+.+. +.+||||-+..+.+ .|++.+..|+++-..+|.+
T Consensus 140 R~v~R~~~~~~~~~~~l~lvAIn~~~nd~-----~d~~~~ayLLkyDSvhG~f 187 (477)
T PRK08289 140 RLLARLLIEKTGGGNGLRLRAIVVRKGSE-----GDLEKRASLLRRDSVHGPF 187 (477)
T ss_pred HHHHHHHHhccCCCCCeEEEEEecCCCCC-----CCHHHHHHHhhhhcCCCCC
Confidence 9999998864 58999997764432 2777777778776666654
No 143
>PRK14167 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.71 E-value=1.1 Score=46.88 Aligned_cols=53 Identities=23% Similarity=0.275 Sum_probs=43.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHC----CCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAY----GAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~----GakVVaVSDs~ 449 (512)
..+|..||+ ++|++.+.+++||+|+|.|- ..||.-+|.+|.+. +|+|. ++.++
T Consensus 137 ~PcTp~avi----~lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~ 194 (297)
T PRK14167 137 KPCTPHGIQ----KLLAAAGVDTEGADVVVVGRSDIVGKPMANLLIQKADGGNATVT-VCHSR 194 (297)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCcccHHHHHHHHhcCccCCCCEEE-EeCCC
Confidence 357888875 45666799999999999995 67899999999988 78774 78774
No 144
>COG0569 TrkA K+ transport systems, NAD-binding component [Inorganic ion transport and metabolism]
Probab=88.37 E-value=0.59 Score=46.21 Aligned_cols=30 Identities=20% Similarity=0.411 Sum_probs=27.4
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
++|+|.|.|.||+.+|+.|.+.|..|+.|-
T Consensus 1 m~iiIiG~G~vG~~va~~L~~~g~~Vv~Id 30 (225)
T COG0569 1 MKIIIIGAGRVGRSVARELSEEGHNVVLID 30 (225)
T ss_pred CEEEEECCcHHHHHHHHHHHhCCCceEEEE
Confidence 589999999999999999999999998653
No 145
>PRK14181 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=88.33 E-value=1.2 Score=46.25 Aligned_cols=53 Identities=15% Similarity=0.202 Sum_probs=43.2
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHC----CCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAY----GAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~----GakVVaVSDs~ 449 (512)
..+|..||+. +|++.+.+++||+|+|.|= ..||.-+|.+|.+. +|+|. ++.+.
T Consensus 133 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~AtVt-vchs~ 190 (287)
T PRK14181 133 IPCTPAGIIE----LLKYYEIPLHGRHVAIVGRSNIVGKPLAALLMQKHPDTNATVT-LLHSQ 190 (287)
T ss_pred CCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccchHHHHHHHHhCcCCCCCEEE-EeCCC
Confidence 4578888754 4566799999999999995 66899999999998 78775 88774
No 146
>PLN02897 tetrahydrofolate dehydrogenase/cyclohydrolase, putative
Probab=88.27 E-value=1 Score=47.85 Aligned_cols=53 Identities=23% Similarity=0.159 Sum_probs=43.9
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..+|..||+. +|++.+.+++||+|+|.|= ..||.-+|.+|.+.||+|. ++.+.
T Consensus 194 ~PCTp~avi~----LL~~~~i~l~GK~vvVIGRS~iVGkPla~LL~~~~ATVT-icHs~ 247 (345)
T PLN02897 194 VSCTPKGCVE----LLIRSGVEIAGKNAVVIGRSNIVGLPMSLLLQRHDATVS-TVHAF 247 (345)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCccccHHHHHHHHHCCCEEE-EEcCC
Confidence 4689888755 4566799999999999995 6689999999999999884 77763
No 147
>PRK08328 hypothetical protein; Provisional
Probab=88.23 E-value=0.59 Score=46.32 Aligned_cols=36 Identities=28% Similarity=0.291 Sum_probs=32.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|++++|+|.|.|-+|..+|+.|+..|..=+.|.|.+
T Consensus 25 L~~~~VlIiG~GGlGs~ia~~La~~Gvg~i~lvD~D 60 (231)
T PRK08328 25 LKKAKVAVVGVGGLGSPVAYYLAAAGVGRILLIDEQ 60 (231)
T ss_pred HhCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 578999999999999999999999998777788754
No 148
>cd00755 YgdL_like Family of activating enzymes (E1) of ubiquitin-like proteins related to the E.coli hypothetical protein ygdL. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=88.19 E-value=0.59 Score=46.74 Aligned_cols=36 Identities=22% Similarity=0.289 Sum_probs=31.1
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|+.++|+|.|.|.||.++|+.|++.|..=+.+.|.+
T Consensus 9 L~~~~VlVvG~GGvGs~va~~Lar~GVg~i~LvD~D 44 (231)
T cd00755 9 LRNAHVAVVGLGGVGSWAAEALARSGVGKLTLIDFD 44 (231)
T ss_pred HhCCCEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 578899999999999999999999997656677753
No 149
>PRK09424 pntA NAD(P) transhydrogenase subunit alpha; Provisional
Probab=88.08 E-value=1.7 Score=48.39 Aligned_cols=35 Identities=20% Similarity=0.277 Sum_probs=30.6
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
...+.+|+|.|.|.+|..++..+..+||+|+ +.|.
T Consensus 162 ~~pg~kVlViGaG~iGL~Ai~~Ak~lGA~V~-a~D~ 196 (509)
T PRK09424 162 KVPPAKVLVIGAGVAGLAAIGAAGSLGAIVR-AFDT 196 (509)
T ss_pred CcCCCEEEEECCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 3468999999999999999999999999755 6676
No 150
>PRK05690 molybdopterin biosynthesis protein MoeB; Provisional
Probab=87.90 E-value=0.74 Score=46.08 Aligned_cols=37 Identities=27% Similarity=0.348 Sum_probs=32.8
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|.+|..+|+.|+..|..=+.|.|.+
T Consensus 29 ~L~~~~VliiG~GglGs~va~~La~~Gvg~i~lvD~D 65 (245)
T PRK05690 29 KLKAARVLVVGLGGLGCAASQYLAAAGVGTLTLVDFD 65 (245)
T ss_pred HhcCCeEEEECCCHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 4678999999999999999999999998767788864
No 151
>PRK07060 short chain dehydrogenase; Provisional
Probab=87.90 E-value=0.96 Score=42.90 Aligned_cols=35 Identities=23% Similarity=0.284 Sum_probs=31.0
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++++++++|.|. |.+|+++++.|.+.|++|+.++
T Consensus 5 ~~~~~~~~lItGa~g~iG~~~a~~l~~~g~~V~~~~ 40 (245)
T PRK07060 5 FDFSGKSVLVTGASSGIGRACAVALAQRGARVVAAA 40 (245)
T ss_pred cccCCCEEEEeCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999997 8999999999999999988554
No 152
>PRK05717 oxidoreductase; Validated
Probab=87.90 E-value=0.92 Score=43.81 Aligned_cols=35 Identities=29% Similarity=0.280 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
+.+++|++|+|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 5 ~~~~~~k~vlItG~sg~IG~~~a~~l~~~g~~v~~~ 40 (255)
T PRK05717 5 NPGHNGRVALVTGAARGIGLGIAAWLIAEGWQVVLA 40 (255)
T ss_pred CcccCCCEEEEeCCcchHHHHHHHHHHHcCCEEEEE
Confidence 46789999999995 999999999999999999854
No 153
>TIGR02355 moeB molybdopterin synthase sulfurylase MoeB. This model describes the molybdopterin biosynthesis protein MoeB in E. coli and related species. The enzyme covalently modifies the molybdopterin synthase MoaD by sulfurylation. This enzyme is closely related to ThiF, a thiamine biosynthesis enzyme that modifies ThiS by an analogous adenylation. Both MoeB and ThiF belong to the HesA/MoeB/ThiF family (pfam00899).
Probab=87.89 E-value=0.65 Score=46.43 Aligned_cols=37 Identities=24% Similarity=0.308 Sum_probs=32.6
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|++++|+|.|.|-+|..+|+.|++.|..=+.+.|.+
T Consensus 21 ~L~~~~VlvvG~GglGs~va~~La~~Gvg~i~lvD~D 57 (240)
T TIGR02355 21 ALKASRVLIVGLGGLGCAASQYLAAAGVGNLTLLDFD 57 (240)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 3678999999999999999999999998777788764
No 154
>TIGR00507 aroE shikimate 5-dehydrogenase. This model finds proteins from prokaryotes and functionally equivalent domains from larger, multifunctional proteins of fungi and plants. Below the trusted cutoff of 180, but above the noise cutoff of 20, are the putative shikimate dehydrogenases of Thermotoga maritima and Mycobacterium tuberculosis, and uncharacterized paralogs of shikimate dehydrogenase from E. coli and H. influenzae. The related enzyme quinate 5-dehydrogenase scores below the noise cutoff. A neighbor-joining tree, constructed with quinate 5-dehydrogenases as the outgroup, shows the Clamydial homolog as clustering among the shikimate dehydrogenases, although the sequence is unusual in the degree of sequence divergence and the presence of an additional N-terminal domain.
Probab=87.81 E-value=1.5 Score=43.95 Aligned_cols=49 Identities=20% Similarity=0.229 Sum_probs=39.0
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-++|.+.+++ ..+...++++++|.|.|.+|+.++..|.+.|++|+ |.+.
T Consensus 100 D~~G~~~~l~----~~~~~~~~k~vliiGaGg~g~aia~~L~~~g~~v~-v~~R 148 (270)
T TIGR00507 100 DGIGLVSDLE----RLIPLRPNQRVLIIGAGGAARAVALPLLKADCNVI-IANR 148 (270)
T ss_pred CHHHHHHHHH----hcCCCccCCEEEEEcCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 4667766654 34556778999999999999999999999998665 6666
No 155
>PRK12826 3-ketoacyl-(acyl-carrier-protein) reductase; Reviewed
Probab=87.73 E-value=0.9 Score=43.04 Aligned_cols=35 Identities=29% Similarity=0.357 Sum_probs=30.8
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
.+++++|+|.| .|.+|.++++.|++.|++|+.++-
T Consensus 3 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~V~~~~r 38 (251)
T PRK12826 3 DLEGRVALVTGAARGIGRAIAVRLAADGAEVIVVDI 38 (251)
T ss_pred CCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999999 699999999999999999987653
No 156
>PLN00203 glutamyl-tRNA reductase
Probab=87.71 E-value=1.1 Score=49.84 Aligned_cols=54 Identities=17% Similarity=0.262 Sum_probs=40.6
Q ss_pred hhHHHHHHHHHHH-HcCC-CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 396 GYGLVFFAQLILA-DMNK-ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 396 G~GV~~~i~eal~-~lg~-~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+.+|.+++-++.+ .++. ++.+++|+|.|.|.+|..+++.|...|++-|.|.+.+
T Consensus 244 ~vSv~s~Av~la~~~~~~~~l~~kkVlVIGAG~mG~~~a~~L~~~G~~~V~V~nRs 299 (519)
T PLN00203 244 AVSVSSAAVELALMKLPESSHASARVLVIGAGKMGKLLVKHLVSKGCTKMVVVNRS 299 (519)
T ss_pred CcCHHHHHHHHHHHhcCCCCCCCCEEEEEeCHHHHHHHHHHHHhCCCCeEEEEeCC
Confidence 3445544444444 4553 6999999999999999999999999998655677763
No 157
>cd08230 glucose_DH Glucose dehydrogenase. Glucose dehydrogenase (GlcDH), a member of the medium chain dehydrogenase/zinc-dependent alcohol dehydrogenase-like family, catalyzes the NADP(+)-dependent oxidation of glucose to gluconate, the first step in the Entner-Doudoroff pathway, an alternative to or substitute for glycolysis or the pentose phosphate pathway. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossman fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contai
Probab=87.61 E-value=1.3 Score=45.39 Aligned_cols=33 Identities=21% Similarity=0.171 Sum_probs=29.8
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
..|.+|+|.|.|.||+.+++.+...|++|++++
T Consensus 171 ~~g~~vlI~G~G~vG~~a~q~ak~~G~~vi~~~ 203 (355)
T cd08230 171 WNPRRALVLGAGPIGLLAALLLRLRGFEVYVLN 203 (355)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEe
Confidence 468999999999999999999999999988664
No 158
>PRK08628 short chain dehydrogenase; Provisional
Probab=87.54 E-value=0.91 Score=43.73 Aligned_cols=36 Identities=31% Similarity=0.430 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 411 g~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
+.+++|++++|.| .|-+|..+|+.|.+.|++|+.++
T Consensus 2 ~~~l~~~~ilItGasggiG~~la~~l~~~G~~v~~~~ 38 (258)
T PRK08628 2 DLNLKDKVVIVTGGASGIGAAISLRLAEEGAIPVIFG 38 (258)
T ss_pred CCCcCCCEEEEeCCCChHHHHHHHHHHHcCCcEEEEc
Confidence 4678999999999 48899999999999999987554
No 159
>PRK14184 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=87.54 E-value=1.2 Score=46.19 Aligned_cols=53 Identities=21% Similarity=0.208 Sum_probs=43.1
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHH----CCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA----YGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e----~GakVVaVSDs~ 449 (512)
..+|..||+ ++|++.+.+++||+|+|.|- ..||.-++.+|.+ .+|+|. +++++
T Consensus 137 ~PcTp~av~----~lL~~~~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~AtVt-~~hs~ 194 (286)
T PRK14184 137 RPCTPAGVM----TLLERYGLSPAGKKAVVVGRSNIVGKPLALMLGAPGKFANATVT-VCHSR 194 (286)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHhCCcccCCCEEE-EEeCC
Confidence 468888865 55666799999999999995 6689999999998 789885 66663
No 160
>PRK05225 ketol-acid reductoisomerase; Validated
Probab=87.50 E-value=0.34 Score=53.35 Aligned_cols=31 Identities=23% Similarity=0.216 Sum_probs=28.5
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEE
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPV 443 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVV 443 (512)
.|+|+||+|.|+|+.|..-|..|...|..|+
T Consensus 33 ~LkgKtIaIIGyGSqG~AqAlNLrdSGvnVv 63 (487)
T PRK05225 33 YLKGKKIVIVGCGAQGLNQGLNMRDSGLDIS 63 (487)
T ss_pred HhCCCEEEEEccCHHHHHHhCCCccccceeE
Confidence 4899999999999999999998889999887
No 161
>TIGR01832 kduD 2-deoxy-D-gluconate 3-dehydrogenase. This model describes 2-deoxy-D-gluconate 3-dehydrogenase (also called 2-keto-3-deoxygluconate oxidoreductase), a member of the family of short-chain-alcohol dehydrogenases (pfam00106). This protein has been characterized in Erwinia chrysanthemi as an enzyme of pectin degradation.
Probab=87.38 E-value=0.99 Score=43.09 Aligned_cols=34 Identities=24% Similarity=0.279 Sum_probs=30.7
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++|++++|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~vi~~~ 36 (248)
T TIGR01832 2 SLEGKVALVTGANTGLGQGIAVGLAEAGADIVGAG 36 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEc
Confidence 578999999996 8999999999999999998664
No 162
>TIGR02354 thiF_fam2 thiamine biosynthesis protein ThiF, family 2. Members of the HesA/MoeB/ThiF family of proteins (pfam00899) include a number of members encoded in the midst of thiamine biosynthetic operons. This mix of known and putative ThiF proteins shows a deep split in phylogenetic trees, with one the E. coli ThiF and the E. coli MoeB proteins seemingly more closely related than E. coli ThiF and Campylobacter (for example) ThiF. This model represents the divergent clade of putative ThiF proteins such found in Campylobacter.
Probab=87.32 E-value=0.78 Score=44.68 Aligned_cols=37 Identities=19% Similarity=0.232 Sum_probs=32.9
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|-+|..+|+.|++.|..-+.+.|.+
T Consensus 18 ~L~~~~V~IvG~GglGs~ia~~La~~Gvg~i~lvD~D 54 (200)
T TIGR02354 18 KLEQATVAICGLGGLGSNVAINLARAGIGKLILVDFD 54 (200)
T ss_pred HHhCCcEEEECcCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 4788999999999999999999999998655688876
No 163
>TIGR01202 bchC 2-desacetyl-2-hydroxyethyl bacteriochlorophyllide A dehydrogenase.
Probab=87.28 E-value=0.85 Score=46.05 Aligned_cols=35 Identities=23% Similarity=0.283 Sum_probs=30.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|.+|+|.|.|.||..+++.+...|+++|.++|.
T Consensus 143 ~~~~~vlV~G~G~vG~~a~q~ak~~G~~~v~~~~~ 177 (308)
T TIGR01202 143 VKVLPDLIVGHGTLGRLLARLTKAAGGSPPAVWET 177 (308)
T ss_pred cCCCcEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 36789999999999999999999999987766654
No 164
>PF01113 DapB_N: Dihydrodipicolinate reductase, N-terminus; InterPro: IPR000846 Dihydrodipicolinate reductase catalyzes the second step in the biosynthesis of diaminopimelic acid and lysine, the NAD or NADP-dependent reduction of 2,3-dihydrodipicolinate into 2,3,4,5-tetrahydrodipicolinate [, , ]. In Escherichia coli and Mycobacterium tuberculosis, dihydrodipicolinate reductase has equal specificity for NADH and NADPH, however in Thermotoga maritima there it has a greater affinity for NADPH []. In addition, the enzyme is inhibited by high concentrations of its substrate, which consequently acts as a feedback control on the lysine biosynthesis pathway. In T. maritima, the enzyme also lacks N-terminal and C-terminal loops which are present in enzyme of the former two organisms. This entry represents the N-terminal domain of dihydrodipicolinate reductase which binds the dinucleotide NAD(P)H.; GO: 0008839 dihydrodipicolinate reductase activity, 0009089 lysine biosynthetic process via diaminopimelate, 0055114 oxidation-reduction process; PDB: 3QY9_D 1VM6_C 1ARZ_A 1DIH_A 1DRW_A 1DRV_A 1DRU_A 2DAP_A 1DAP_B 3DAP_A ....
Probab=87.23 E-value=0.91 Score=40.66 Aligned_cols=34 Identities=24% Similarity=0.387 Sum_probs=31.6
Q ss_pred cEEEEecc-cHHHHHHHHHHHH-CCCEEEEEeCCCc
Q 010384 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKG 450 (512)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e-~GakVVaVSDs~G 450 (512)
.||+|.|+ |++|+.+++.+.+ .|..++++.|++.
T Consensus 1 mrV~i~G~~GrMG~~i~~~i~~~~~~~lv~~v~~~~ 36 (124)
T PF01113_consen 1 MRVGIVGASGRMGRAIAEAILESPGFELVGAVDRKP 36 (124)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHSTTEEEEEEEETTT
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCCcEEEEEEecCC
Confidence 48999999 9999999999999 8999999999976
No 165
>cd01492 Aos1_SUMO Ubiquitin activating enzyme (E1) subunit Aos1. Aos1 is part of the heterodimeric activating enzyme (E1), specific for the SUMO family of ubiquitin-like proteins (Ubls). E1 enzymes are part of a conjugation cascade to attach Ub or Ubls, covalently to substrate proteins consisting of activating (E1), conjugating (E2), and/or ligating (E3) enzymes. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and Ubls C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Post-translational modification by SUMO family of ubiquitin-like proteins (Ublps) is involved in cell division, nuclear transport, the stress response and signal transduction. Aos1 contains part of the adenylation domain.
Probab=87.20 E-value=0.62 Score=45.14 Aligned_cols=37 Identities=16% Similarity=0.344 Sum_probs=33.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|.|.|.|.+|..+++.|...|..-+.+.|.+
T Consensus 18 ~L~~s~VlIiG~gglG~evak~La~~GVg~i~lvD~d 54 (197)
T cd01492 18 RLRSARILLIGLKGLGAEIAKNLVLSGIGSLTILDDR 54 (197)
T ss_pred HHHhCcEEEEcCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 3678999999999999999999999999877788764
No 166
>smart00846 Gp_dh_N Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain. GAPDH is a tetrameric NAD-binding enzyme involved in glycolysis and glyconeogenesis. N-terminal domain is a Rossmann NAD(P) binding fold.
Probab=87.12 E-value=1.4 Score=41.28 Aligned_cols=50 Identities=22% Similarity=0.283 Sum_probs=37.6
Q ss_pred cEEEEecccHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~ 475 (512)
.+|+|.|||.+|+.+++.+.+ .+..+++|.|. .+++.+..|+++-..+|.
T Consensus 1 ikv~I~G~GriGr~v~~~~~~~~~~~lvai~d~---------~~~~~~a~ll~~Ds~hg~ 51 (149)
T smart00846 1 IKVGINGFGRIGRLVLRALLERPDIEVVAINDL---------TDPETLAHLLKYDSVHGR 51 (149)
T ss_pred CEEEEECcCHHHHHHHHHHHhCCCCEEEEeecC---------CCHHHHHHHhcccCCCCC
Confidence 379999999999999998875 68999999874 256665556665444554
No 167
>PLN02712 arogenate dehydrogenase
Probab=87.06 E-value=0.92 Score=51.89 Aligned_cols=37 Identities=14% Similarity=0.249 Sum_probs=32.7
Q ss_pred cCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 410 lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+.++++++|+|+|+|++|+.+|+.|.+.|..|+++.
T Consensus 363 ~~~~~~~~kIgIIGlG~mG~slA~~L~~~G~~V~~~d 399 (667)
T PLN02712 363 CVNDGSKLKIAIVGFGNFGQFLAKTMVKQGHTVLAYS 399 (667)
T ss_pred ccCCCCCCEEEEEecCHHHHHHHHHHHHCcCEEEEEE
Confidence 4567899999999999999999999999999888554
No 168
>COG1064 AdhP Zn-dependent alcohol dehydrogenases [General function prediction only]
Probab=87.01 E-value=0.92 Score=48.14 Aligned_cols=34 Identities=21% Similarity=0.327 Sum_probs=31.3
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.|++|+|.|+|-+|..+++++..+||+|++++=+
T Consensus 166 pG~~V~I~G~GGlGh~avQ~Aka~ga~Via~~~~ 199 (339)
T COG1064 166 PGKWVAVVGAGGLGHMAVQYAKAMGAEVIAITRS 199 (339)
T ss_pred CCCEEEEECCcHHHHHHHHHHHHcCCeEEEEeCC
Confidence 4899999999999999999999999999988755
No 169
>KOG0022 consensus Alcohol dehydrogenase, class III [Secondary metabolites biosynthesis, transport and catabolism]
Probab=86.98 E-value=0.71 Score=48.96 Aligned_cols=57 Identities=23% Similarity=0.150 Sum_probs=41.6
Q ss_pred ccccCCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCC-EEEEE
Q 010384 382 RIFWSGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSV 445 (512)
Q Consensus 382 pl~~GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~Ga-kVVaV 445 (512)
|++---.++-.-.||||.+.-+- .. -+|.+|||-|+|.||..+++-....|| +||+|
T Consensus 166 Pl~kvcLLgCGvsTG~GAa~~~A------kv-~~GstvAVfGLG~VGLav~~Gaka~GAsrIIgv 223 (375)
T KOG0022|consen 166 PLEKVCLLGCGVSTGYGAAWNTA------KV-EPGSTVAVFGLGGVGLAVAMGAKAAGASRIIGV 223 (375)
T ss_pred ChhheeEeeccccccchhhhhhc------cc-CCCCEEEEEecchHHHHHHHhHHhcCcccEEEE
Confidence 44333345566789999743222 22 368999999999999999998888886 77776
No 170
>PRK12828 short chain dehydrogenase; Provisional
Probab=86.98 E-value=1.1 Score=41.94 Aligned_cols=34 Identities=24% Similarity=0.311 Sum_probs=30.1
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++|++++|.|. |-+|+.+++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGatg~iG~~la~~l~~~G~~v~~~~ 38 (239)
T PRK12828 4 SLQGKVVAITGGFGGLGRATAAWLAARGARVALIG 38 (239)
T ss_pred CCCCCEEEEECCCCcHhHHHHHHHHHCCCeEEEEe
Confidence 478999999985 9999999999999999987653
No 171
>PRK14168 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.94 E-value=1.5 Score=45.84 Aligned_cols=53 Identities=19% Similarity=0.220 Sum_probs=42.8
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEec-ccHHHHHHHHHHHHC----CCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAY----GAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQG-fGNVG~~aAe~L~e~----GakVVaVSDs~ 449 (512)
..+|..||+. +|++.+.+++||+|+|.| +..||.-+|.+|.+. +|+|. ++.++
T Consensus 141 ~PcTp~avi~----lL~~~~i~l~Gk~vvViGrS~iVGkPla~lL~~~~~~~~atVt-v~hs~ 198 (297)
T PRK14168 141 LPCTPAGIQE----MLVRSGVETSGAEVVVVGRSNIVGKPIANMMTQKGPGANATVT-IVHTR 198 (297)
T ss_pred cCCCHHHHHH----HHHHhCCCCCCCEEEEECCCCcccHHHHHHHHhcccCCCCEEE-EecCC
Confidence 4588888754 455679999999999999 467899999999998 67774 77764
No 172
>cd01485 E1-1_like Ubiquitin activating enzyme (E1), repeat 1-like. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. The E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. A set of novel molecules with a structural similarity to Ub, called Ub-like proteins (Ubls), have similar conjugation cascades. In contrast to ubiquitin-E1, which is a single-chain protein with a weakly conserved two-fold repeat, many of the Ubls-E1are a heterodimer where each subunit corresponds to one half of a single-chain E1. This CD represents the family homol
Probab=86.91 E-value=0.72 Score=44.66 Aligned_cols=36 Identities=17% Similarity=0.482 Sum_probs=32.4
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|+.++|.|.|.|.+|..+|+.|...|..=+.+.|.+
T Consensus 17 L~~s~VlviG~gglGsevak~L~~~GVg~i~lvD~d 52 (198)
T cd01485 17 LRSAKVLIIGAGALGAEIAKNLVLAGIDSITIVDHR 52 (198)
T ss_pred HhhCcEEEECCCHHHHHHHHHHHHcCCCEEEEEECC
Confidence 577999999999999999999999998877788864
No 173
>PRK14174 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.83 E-value=1.6 Score=45.50 Aligned_cols=53 Identities=23% Similarity=0.392 Sum_probs=42.8
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHH----CCCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIA----YGAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e----~GakVVaVSDs~ 449 (512)
..+|..|| -++|++.+.+++||+|+|.|- ..||.-+|..|.+ .|+.|. ++.++
T Consensus 139 ~PcTp~ai----l~ll~~y~i~l~Gk~vvViGrS~iVG~Pla~lL~~~~~~~~atVt-~~hs~ 196 (295)
T PRK14174 139 VSCTPYGI----LELLGRYNIETKGKHCVVVGRSNIVGKPMANLMLQKLKESNCTVT-ICHSA 196 (295)
T ss_pred CCCCHHHH----HHHHHHhCCCCCCCEEEEECCCCcchHHHHHHHHhccccCCCEEE-EEeCC
Confidence 46898886 556677799999999999995 6689999999988 688875 66653
No 174
>PLN02586 probable cinnamyl alcohol dehydrogenase
Probab=86.80 E-value=1.9 Score=44.71 Aligned_cols=35 Identities=20% Similarity=0.200 Sum_probs=30.8
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.|.+|+|.|.|.||+.+++.+...|++|++++++
T Consensus 182 ~~g~~VlV~G~G~vG~~avq~Ak~~Ga~vi~~~~~ 216 (360)
T PLN02586 182 EPGKHLGVAGLGGLGHVAVKIGKAFGLKVTVISSS 216 (360)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCC
Confidence 36899999999999999999999999998876544
No 175
>PRK14185 bifunctional 5,10-methylene-tetrahydrofolate dehydrogenase/ 5,10-methylene-tetrahydrofolate cyclohydrolase; Provisional
Probab=86.67 E-value=1.6 Score=45.44 Aligned_cols=53 Identities=21% Similarity=0.354 Sum_probs=43.0
Q ss_pred CCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHC----CCEEEEEeCCC
Q 010384 392 TEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAY----GAIPVSVSDAK 449 (512)
Q Consensus 392 ~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~----GakVVaVSDs~ 449 (512)
..+|..||+ ++|++.+.+++||+|+|.|- ..||.-+|.+|.+. +|+|+ ++.++
T Consensus 137 ~PcTp~av~----~lL~~~~i~l~GK~vvViGrS~iVGkPla~lL~~~~~~~~aTVt-vchs~ 194 (293)
T PRK14185 137 VSATPNGIL----ELLKRYHIETSGKKCVVLGRSNIVGKPMAQLMMQKAYPGDCTVT-VCHSR 194 (293)
T ss_pred CCCCHHHHH----HHHHHhCCCCCCCEEEEECCCccchHHHHHHHHcCCCCCCCEEE-EecCC
Confidence 468988875 45567799999999999995 66899999999988 68875 77764
No 176
>KOG2380 consensus Prephenate dehydrogenase (NADP+) [Amino acid transport and metabolism]
Probab=86.57 E-value=0.73 Score=49.41 Aligned_cols=33 Identities=24% Similarity=0.277 Sum_probs=29.0
Q ss_pred CcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-++|+|+||||.|+..|+.|.+.|..+++-+-+
T Consensus 52 tl~IaIIGfGnmGqflAetli~aGh~li~hsRs 84 (480)
T KOG2380|consen 52 TLVIAIIGFGNMGQFLAETLIDAGHGLICHSRS 84 (480)
T ss_pred ceEEEEEecCcHHHHHHHHHHhcCceeEecCcc
Confidence 478999999999999999999999999855544
No 177
>PRK08644 thiamine biosynthesis protein ThiF; Provisional
Probab=86.37 E-value=0.87 Score=44.67 Aligned_cols=37 Identities=19% Similarity=0.301 Sum_probs=33.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|.+|..+|+.|.+.|..=+.+.|.+
T Consensus 25 ~L~~~~V~ViG~GglGs~ia~~La~~Gvg~i~lvD~D 61 (212)
T PRK08644 25 KLKKAKVGIAGAGGLGSNIAVALARSGVGNLKLVDFD 61 (212)
T ss_pred HHhCCCEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4788999999999999999999999998766788865
No 178
>PF03721 UDPG_MGDP_dh_N: UDP-glucose/GDP-mannose dehydrogenase family, NAD binding domain; InterPro: IPR001732 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]. The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the N-terminal NAD(+)-binding domain. Structural studies indicate that this domain forms an alpha-beta structure containing the six-stranded parallel beta sheet characteristic of the dinucleotide binding Rossman fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3OJO_A 3OJL_A 1MV8_B 1MUU_A 1MFZ_C 3GG2_D 1DLJ_A 1DLI_A 3G79_B 2Y0E_D ....
Probab=86.32 E-value=0.88 Score=43.72 Aligned_cols=31 Identities=23% Similarity=0.373 Sum_probs=25.2
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|-||..+|-.|++.|.+|+++ |.
T Consensus 1 M~I~ViGlGyvGl~~A~~lA~~G~~V~g~-D~ 31 (185)
T PF03721_consen 1 MKIAVIGLGYVGLPLAAALAEKGHQVIGV-DI 31 (185)
T ss_dssp -EEEEE--STTHHHHHHHHHHTTSEEEEE--S
T ss_pred CEEEEECCCcchHHHHHHHHhCCCEEEEE-eC
Confidence 58999999999999999999999999965 54
No 179
>PRK07688 thiamine/molybdopterin biosynthesis ThiF/MoeB-like protein; Validated
Probab=86.25 E-value=0.88 Score=47.82 Aligned_cols=37 Identities=22% Similarity=0.369 Sum_probs=32.9
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|.+|..+|+.|++.|..-+.|.|.+
T Consensus 21 ~L~~~~VlVvG~GglGs~va~~La~aGvg~i~lvD~D 57 (339)
T PRK07688 21 KLREKHVLIIGAGALGTANAEMLVRAGVGKVTIVDRD 57 (339)
T ss_pred HhcCCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4678999999999999999999999998666788875
No 180
>PRK07523 gluconate 5-dehydrogenase; Provisional
Probab=86.22 E-value=1.3 Score=42.77 Aligned_cols=35 Identities=31% Similarity=0.412 Sum_probs=30.7
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+++|++|+|.|. |.+|..+|+.|++.|++|+. .++
T Consensus 7 ~~~~k~vlItGa~g~iG~~ia~~l~~~G~~V~~-~~r 42 (255)
T PRK07523 7 DLTGRRALVTGSSQGIGYALAEGLAQAGAEVIL-NGR 42 (255)
T ss_pred CCCCCEEEEECCcchHHHHHHHHHHHcCCEEEE-EeC
Confidence 578999999995 99999999999999999874 444
No 181
>PLN02240 UDP-glucose 4-epimerase
Probab=85.85 E-value=1.3 Score=44.78 Aligned_cols=34 Identities=29% Similarity=0.429 Sum_probs=31.0
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++|+|.|. |.||+++++.|.+.|..|++++
T Consensus 2 ~~~~~~vlItGatG~iG~~l~~~L~~~g~~V~~~~ 36 (352)
T PLN02240 2 SLMGRTILVTGGAGYIGSHTVLQLLLAGYKVVVID 36 (352)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578899999986 9999999999999999998775
No 182
>PRK06125 short chain dehydrogenase; Provisional
Probab=85.76 E-value=1.5 Score=42.54 Aligned_cols=35 Identities=26% Similarity=0.306 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|++++|.|. |.+|+.+|+.|++.|++|+.++
T Consensus 3 ~~~~~k~vlItG~~~giG~~ia~~l~~~G~~V~~~~ 38 (259)
T PRK06125 3 LHLAGKRVLITGASKGIGAAAAEAFAAEGCHLHLVA 38 (259)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 4578999999997 7899999999999999987553
No 183
>COG1179 Dinucleotide-utilizing enzymes involved in molybdopterin and thiamine biosynthesis family 1 [Coenzyme metabolism]
Probab=85.66 E-value=0.73 Score=47.16 Aligned_cols=35 Identities=26% Similarity=0.330 Sum_probs=30.5
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
|+..+|+|.|.|-||+++++.|++-|..=+.+.|-
T Consensus 28 l~~~~V~VvGiGGVGSw~veALaRsGig~itlID~ 62 (263)
T COG1179 28 LKQAHVCVVGIGGVGSWAVEALARSGIGRITLIDM 62 (263)
T ss_pred HhhCcEEEEecCchhHHHHHHHHHcCCCeEEEEec
Confidence 57789999999999999999999999766666665
No 184
>PRK04308 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.61 E-value=1.3 Score=47.34 Aligned_cols=36 Identities=22% Similarity=0.326 Sum_probs=31.9
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++.+++|.|.|.|..|..+|++|.+.|++|+ ++|.+
T Consensus 2 ~~~~~~~~v~G~g~~G~~~a~~l~~~g~~v~-~~d~~ 37 (445)
T PRK04308 2 TFQNKKILVAGLGGTGISMIAYLRKNGAEVA-AYDAE 37 (445)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 3678999999999999999999999999986 67763
No 185
>PF00044 Gp_dh_N: Glyceraldehyde 3-phosphate dehydrogenase, NAD binding domain; InterPro: IPR020828 Glyceraldehyde-3-phosphate dehydrogenase (GAPDH) plays an important role in glycolysis and gluconeogenesis [] by reversibly catalysing the oxidation and phosphorylation of D-glyceraldehyde-3-phosphate to 1,3-diphospho-glycerate. The enzyme exists as a tetramer of identical subunits, each containing 2 conserved functional domains: an NAD-binding domain, and a highly conserved catalytic domain []. The enzyme has been found to bind to actin and tropomyosin, and may thus have a role in cytoskeleton assembly. Alternatively, the cytoskeleton may provide a framework for precise positioning of the glycolytic enzymes, thus permitting efficient passage of metabolites from enzyme to enzyme []. GAPDH displays diverse non-glycolytic functions as well, its role depending upon its subcellular location. For instance, the translocation of GAPDH to the nucleus acts as a signalling mechanism for programmed cell death, or apoptosis []. The accumulation of GAPDH within the nucleus is involved in the induction of apoptosis, where GAPDH functions in the activation of transcription. The presence of GAPDH is associated with the synthesis of pro-apoptotic proteins like BAX, c-JUN and GAPDH itself. GAPDH has been implicated in certain neurological diseases: GAPDH is able to bind to the gene products from neurodegenerative disorders such as Huntington's disease, Alzheimer's disease, Parkinson's disease and Machado-Joseph disease through stretches encoded by their CAG repeats. Abnormal neuronal apoptosis is associated with these diseases. Propargylamines such as deprenyl increase neuronal survival by interfering with apoptosis signalling pathways via their binding to GAPDH, which decreases the synthesis of pro-apoptotic proteins []. This entry represents the N-terminal domain which is a Rossmann NAD(P) binding fold.; GO: 0016620 oxidoreductase activity, acting on the aldehyde or oxo group of donors, NAD or NADP as acceptor, 0055114 oxidation-reduction process; PDB: 2G82_Q 1CER_R 1ZNQ_Q 3GPD_G 1U8F_R 3DOC_B 2YYY_A 1GPD_G 4GPD_1 2I5P_O ....
Probab=85.60 E-value=1.2 Score=42.08 Aligned_cols=52 Identities=19% Similarity=0.266 Sum_probs=40.3
Q ss_pred cEEEEecccHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|-|||-+|+.+++.+.. ....||+|.|.. .|++.+..|+++-.-+|.+
T Consensus 1 ikVgINGfGRIGR~v~r~~~~~~~~evvaInd~~--------~~~~~~a~LlkyDs~~G~~ 53 (151)
T PF00044_consen 1 IKVGINGFGRIGRLVLRAALDQPDIEVVAINDPA--------PDPEYLAYLLKYDSVHGRF 53 (151)
T ss_dssp EEEEEESTSHHHHHHHHHHHTSTTEEEEEEEESS--------SSHHHHHHHHHEETTTESG
T ss_pred CEEEEECCCcccHHHHHhhcccceEEEEEEeccc--------ccchhhhhhhhccccccce
Confidence 379999999999999999984 578999998883 4777776666654444544
No 186
>PRK01710 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.58 E-value=1.1 Score=48.15 Aligned_cols=36 Identities=25% Similarity=0.314 Sum_probs=31.8
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
-+.+++|.|.|+|.-|..+|++|.+.|++|. ++|.+
T Consensus 11 ~~~~~~i~v~G~G~sG~a~a~~L~~~G~~V~-~~D~~ 46 (458)
T PRK01710 11 FIKNKKVAVVGIGVSNIPLIKFLVKLGAKVT-AFDKK 46 (458)
T ss_pred hhcCCeEEEEcccHHHHHHHHHHHHCCCEEE-EECCC
Confidence 3568999999999999999999999999875 88863
No 187
>PRK04148 hypothetical protein; Provisional
Probab=85.52 E-value=1.6 Score=40.67 Aligned_cols=33 Identities=27% Similarity=0.253 Sum_probs=28.8
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.++++|++.|.| -|..+|+.|.+.|..|++| |.
T Consensus 15 ~~~~kileIG~G-fG~~vA~~L~~~G~~ViaI-Di 47 (134)
T PRK04148 15 GKNKKIVELGIG-FYFKVAKKLKESGFDVIVI-DI 47 (134)
T ss_pred ccCCEEEEEEec-CCHHHHHHHHHCCCEEEEE-EC
Confidence 467899999999 8888999999999999855 65
No 188
>COG1748 LYS9 Saccharopine dehydrogenase and related proteins [Amino acid transport and metabolism]
Probab=85.51 E-value=1.4 Score=47.60 Aligned_cols=32 Identities=25% Similarity=0.429 Sum_probs=28.0
Q ss_pred cEEEEecccHHHHHHHHHHHHCC-CEEEEEeCCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYG-AIPVSVSDAK 449 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~G-akVVaVSDs~ 449 (512)
++|+|.|.|+||+.+|++|++.| ..| .|+|.+
T Consensus 2 ~~ilviGaG~Vg~~va~~la~~~d~~V-~iAdRs 34 (389)
T COG1748 2 MKILVIGAGGVGSVVAHKLAQNGDGEV-TIADRS 34 (389)
T ss_pred CcEEEECCchhHHHHHHHHHhCCCceE-EEEeCC
Confidence 68999999999999999999999 666 488873
No 189
>PRK09880 L-idonate 5-dehydrogenase; Provisional
Probab=85.49 E-value=3.3 Score=42.20 Aligned_cols=32 Identities=34% Similarity=0.498 Sum_probs=27.8
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCE-EEEE
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSV 445 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~Gak-VVaV 445 (512)
..|.+|+|.|.|.||+.+++.+...|++ |+++
T Consensus 168 ~~g~~VlV~G~G~vG~~aiqlak~~G~~~Vi~~ 200 (343)
T PRK09880 168 LQGKRVFVSGVGPIGCLIVAAVKTLGAAEIVCA 200 (343)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCcEEEEE
Confidence 3689999999999999999999999995 6543
No 190
>PRK08217 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=85.41 E-value=1.6 Score=41.42 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=30.1
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++|++++|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 2 ~~~~~~~lItG~~g~iG~~~a~~l~~~G~~vi~~~ 36 (253)
T PRK08217 2 DLKDKVIVITGGAQGLGRAMAEYLAQKGAKLALID 36 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 478999999997 9999999999999999987543
No 191
>PRK08223 hypothetical protein; Validated
Probab=85.38 E-value=0.93 Score=47.04 Aligned_cols=37 Identities=22% Similarity=0.304 Sum_probs=33.2
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|-+|..+|+.|+..|..=+.|.|.+
T Consensus 24 kL~~s~VlIvG~GGLGs~va~~LA~aGVG~i~lvD~D 60 (287)
T PRK08223 24 RLRNSRVAIAGLGGVGGIHLLTLARLGIGKFTIADFD 60 (287)
T ss_pred HHhcCCEEEECCCHHHHHHHHHHHHhCCCeEEEEeCC
Confidence 3688999999999999999999999998777788865
No 192
>PRK06138 short chain dehydrogenase; Provisional
Probab=85.35 E-value=1.5 Score=41.81 Aligned_cols=34 Identities=24% Similarity=0.271 Sum_probs=30.3
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++|++++|.|. |-+|..+|+.|.+.|++|+.++
T Consensus 2 ~~~~k~~lItG~sg~iG~~la~~l~~~G~~v~~~~ 36 (252)
T PRK06138 2 RLAGRVAIVTGAGSGIGRATAKLFAREGARVVVAD 36 (252)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCeEEEec
Confidence 478999999986 8999999999999999998664
No 193
>PF03446 NAD_binding_2: NAD binding domain of 6-phosphogluconate dehydrogenase; InterPro: IPR006115 6-Phosphogluconate dehydrogenase (1.1.1.44 from EC) (6PGD) is an oxidative carboxylase that catalyses the decarboxylating reduction of 6-phosphogluconate into ribulose 5-phosphate in the presence of NADP. This reaction is a component of the hexose mono-phosphate shunt and pentose phosphate pathways (PPP) [, ]. Prokaryotic and eukaryotic 6PGD are proteins of about 470 amino acids whose sequence are highly conserved []. The protein is a homodimer in which the monomers act independently []: each contains a large, mainly alpha-helical domain and a smaller beta-alpha-beta domain, containing a mixed parallel and anti-parallel 6-stranded beta sheet []. NADP is bound in a cleft in the small domain, the substrate binding in an adjacent pocket []. This family represents the NADP binding domain of 6-phosphogluconate dehydrogenase which adopts a Rossman fold. The C-terminal domain is described in IPR006114 from INTERPRO.; GO: 0004616 phosphogluconate dehydrogenase (decarboxylating) activity, 0006098 pentose-phosphate shunt, 0055114 oxidation-reduction process; PDB: 3AX6_D 3PDU_G 3Q3C_A 3OBB_A 4DLL_B 1PGP_A 1PGN_A 2PGD_A 1PGQ_A 1PGO_A ....
Probab=85.27 E-value=1.3 Score=41.03 Aligned_cols=31 Identities=19% Similarity=0.215 Sum_probs=25.8
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|.+.|+|+.|+..|+.|.+.|..|. +-|.
T Consensus 2 ~~Ig~IGlG~mG~~~a~~L~~~g~~v~-~~d~ 32 (163)
T PF03446_consen 2 MKIGFIGLGNMGSAMARNLAKAGYEVT-VYDR 32 (163)
T ss_dssp BEEEEE--SHHHHHHHHHHHHTTTEEE-EEES
T ss_pred CEEEEEchHHHHHHHHHHHHhcCCeEE-eecc
Confidence 589999999999999999999999986 5565
No 194
>KOG1370 consensus S-adenosylhomocysteine hydrolase [Coenzyme transport and metabolism]
Probab=85.26 E-value=0.82 Score=48.42 Aligned_cols=35 Identities=26% Similarity=0.432 Sum_probs=32.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
=+.||-++|-|+|+||...|+.|.-.|++|+ |++.
T Consensus 211 M~aGKv~Vv~GYGdVGKgCaqaLkg~g~~Vi-vTEi 245 (434)
T KOG1370|consen 211 MIAGKVAVVCGYGDVGKGCAQALKGFGARVI-VTEI 245 (434)
T ss_pred eecccEEEEeccCccchhHHHHHhhcCcEEE-Eecc
Confidence 4789999999999999999999999999987 7776
No 195
>PLN02358 glyceraldehyde-3-phosphate dehydrogenase
Probab=85.25 E-value=1.5 Score=46.52 Aligned_cols=52 Identities=17% Similarity=0.183 Sum_probs=40.9
Q ss_pred cEEEEecccHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|.|||.+|+..++.+.+ .+..+|+|.|... |++.+..|+++-..+|.+
T Consensus 6 lrVaI~G~GrIGr~~~r~~~~~~~velvaI~D~~~--------~~~~~a~ll~yDs~~g~~ 58 (338)
T PLN02358 6 IRIGINGFGRIGRLVARVVLQRDDVELVAVNDPFI--------TTEYMTYMFKYDSVHGQW 58 (338)
T ss_pred eEEEEEeecHHHHHHHHHHhhCCCcEEEEEeCCCC--------CHHHHHHhheeecCCCCc
Confidence 699999999999999999876 4799999988643 566666677765555554
No 196
>PRK05562 precorrin-2 dehydrogenase; Provisional
Probab=85.19 E-value=1.3 Score=44.33 Aligned_cols=37 Identities=16% Similarity=0.204 Sum_probs=32.5
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..++|++|+|.|.|.||..=++.|.+.||+|+-||-.
T Consensus 21 l~~~~~~VLVVGGG~VA~RK~~~Ll~~gA~VtVVap~ 57 (223)
T PRK05562 21 LLSNKIKVLIIGGGKAAFIKGKTFLKKGCYVYILSKK 57 (223)
T ss_pred EECCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEcCC
Confidence 3677999999999999999999999999999867644
No 197
>PRK06841 short chain dehydrogenase; Provisional
Probab=85.13 E-value=1.5 Score=41.96 Aligned_cols=35 Identities=29% Similarity=0.320 Sum_probs=30.8
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++++++|+|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 11 ~~~~~k~vlItGas~~IG~~la~~l~~~G~~Vi~~~ 46 (255)
T PRK06841 11 FDLSGKVAVVTGGASGIGHAIAELFAAKGARVALLD 46 (255)
T ss_pred cCCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 3578999999995 9999999999999999988554
No 198
>PRK05557 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=85.12 E-value=1.8 Score=40.63 Aligned_cols=36 Identities=31% Similarity=0.349 Sum_probs=30.9
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++++++++|.|. |.+|+++++.|.+.|++|+.++..
T Consensus 2 ~~~~~~vlItG~sg~iG~~l~~~l~~~G~~v~~~~~~ 38 (248)
T PRK05557 2 SLEGKVALVTGASRGIGRAIAERLAAQGANVVINYAS 38 (248)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEeCC
Confidence 467899999995 899999999999999999766543
No 199
>PRK02006 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=85.12 E-value=1.3 Score=48.25 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.2
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++.+++|.|.|+|..|..+|++|.+.|++|. ++|.+
T Consensus 4 ~~~~~~i~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 39 (498)
T PRK02006 4 DLQGPMVLVLGLGESGLAMARWCARHGARLR-VADTR 39 (498)
T ss_pred ccCCCEEEEEeecHhHHHHHHHHHHCCCEEE-EEcCC
Confidence 4678999999999999999999999999875 78874
No 200
>TIGR01921 DAP-DH diaminopimelate dehydrogenase. This model represents the diaminopimelate dehydrogenase enzyme which provides an alternate (shortcut) route of lysine buiosynthesis in Corynebacterium, Bacterioides, Porphyromonas and scattered other species. The enzyme from Corynebacterium glutamicum has been crystallized and characterized.
Probab=85.03 E-value=1.5 Score=46.36 Aligned_cols=34 Identities=18% Similarity=0.241 Sum_probs=30.4
Q ss_pred CcEEEEecccHHHHHHHHHHHHC-CCEEEEEeCCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAK 449 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~-GakVVaVSDs~ 449 (512)
..||+|.|+||+|+..++.+.+. +..+|+|.|.+
T Consensus 3 kIRVgIVG~GnIGr~~a~al~~~pd~ELVgV~dr~ 37 (324)
T TIGR01921 3 KIRAAIVGYGNLGRSVEKAIQQQPDMELVGVFSRR 37 (324)
T ss_pred CcEEEEEeecHHHHHHHHHHHhCCCcEEEEEEcCC
Confidence 47999999999999999999764 89999999985
No 201
>PRK05786 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.98 E-value=1.7 Score=41.15 Aligned_cols=34 Identities=24% Similarity=0.202 Sum_probs=30.0
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++|.|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGa~g~iG~~~a~~l~~~G~~V~~~~ 36 (238)
T PRK05786 2 RLKGKKVAIIGVSEGLGYAVAYFALKEGAQVCINS 36 (238)
T ss_pred CcCCcEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 467899999996 8899999999999999998654
No 202
>PRK13535 erythrose 4-phosphate dehydrogenase; Provisional
Probab=84.98 E-value=2.2 Score=45.12 Aligned_cols=50 Identities=20% Similarity=0.321 Sum_probs=39.5
Q ss_pred cEEEEecccHHHHHHHHHHHHC----CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY----GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~----GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~ 475 (512)
.+|+|-|||-||+.+.+.|.+. ...+|+|-|. .|++.+..|+++-..+|.
T Consensus 2 ~~IaInGfGrIGR~~lr~l~e~~~~~~l~vvaind~---------~~~~~~ayll~ydS~hg~ 55 (336)
T PRK13535 2 IRVAINGFGRIGRNVLRALYESGRRAEITVVAINEL---------ADAEGMAHLLKYDTSHGR 55 (336)
T ss_pred eEEEEECcCHHHHHHHHHHHhcCCCCceEEEEecCC---------CCHHHHHHHhhhccCCCC
Confidence 4799999999999999999874 5789988775 266777777777665544
No 203
>COG0057 GapA Glyceraldehyde-3-phosphate dehydrogenase/erythrose-4-phosphate dehydrogenase [Carbohydrate transport and metabolism]
Probab=84.84 E-value=2.9 Score=44.42 Aligned_cols=50 Identities=18% Similarity=0.224 Sum_probs=39.1
Q ss_pred cEEEEecccHHHHHHHHHHHHCC--CEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYG--AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~G--akVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~ 475 (512)
.||+|=|||-+|+-+++.+.+.+ ..||||.|. .|++-+..|+.+...+|.
T Consensus 2 ikV~INGfGrIGR~v~ra~~~~~~dieVVaInd~---------t~~~~~A~LlkyDs~hg~ 53 (335)
T COG0057 2 IKVAINGFGRIGRLVARAALERDGDIEVVAINDL---------TDPDYLAHLLKYDSVHGR 53 (335)
T ss_pred cEEEEecCcHHHHHHHHHHHhCCCCeEEEEEecC---------CCHHHHHHHHhhcccCCC
Confidence 58999999999999999999975 899999995 256665556665543443
No 204
>PRK07231 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=84.70 E-value=1.7 Score=41.26 Aligned_cols=34 Identities=26% Similarity=0.377 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |.+|..+++.|.+.|++|+.++
T Consensus 2 ~~~~~~vlItGasg~iG~~l~~~l~~~G~~V~~~~ 36 (251)
T PRK07231 2 RLEGKVAIVTGASSGIGEGIARRFAAEGARVVVTD 36 (251)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 478899999995 9999999999999999987553
No 205
>PRK01390 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.68 E-value=1.4 Score=47.25 Aligned_cols=35 Identities=26% Similarity=0.252 Sum_probs=31.6
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++|++|.|.|+|.-|..+|++|.+.|++| .++|..
T Consensus 7 ~~~~~i~viG~G~~G~~~a~~l~~~G~~v-~~~D~~ 41 (460)
T PRK01390 7 FAGKTVAVFGLGGSGLATARALVAGGAEV-IAWDDN 41 (460)
T ss_pred cCCCEEEEEeecHhHHHHHHHHHHCCCEE-EEECCC
Confidence 67899999999999999999999999986 588864
No 206
>PRK13302 putative L-aspartate dehydrogenase; Provisional
Probab=84.67 E-value=1.5 Score=44.57 Aligned_cols=35 Identities=23% Similarity=0.246 Sum_probs=31.0
Q ss_pred CCCcEEEEecccHHHHHHHHHHHH--CCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIA--YGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e--~GakVVaVSDs 448 (512)
.+.+||.|.|+|++|+..++.|.+ .+..+++|+|.
T Consensus 4 m~~irIGIIG~G~IG~~~a~~L~~~~~~~el~aV~dr 40 (271)
T PRK13302 4 RPELRVAIAGLGAIGKAIAQALDRGLPGLTLSAVAVR 40 (271)
T ss_pred CCeeEEEEECccHHHHHHHHHHHhcCCCeEEEEEECC
Confidence 456899999999999999999987 48899999987
No 207
>PRK06949 short chain dehydrogenase; Provisional
Probab=84.58 E-value=1.8 Score=41.50 Aligned_cols=35 Identities=26% Similarity=0.309 Sum_probs=31.1
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++++++|+|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 5 ~~~~~k~ilItGasg~IG~~~a~~l~~~G~~Vi~~~ 40 (258)
T PRK06949 5 INLEGKVALVTGASSGLGARFAQVLAQAGAKVVLAS 40 (258)
T ss_pred cCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999996 9999999999999999988654
No 208
>PRK06523 short chain dehydrogenase; Provisional
Probab=84.55 E-value=1.6 Score=41.99 Aligned_cols=35 Identities=31% Similarity=0.470 Sum_probs=31.1
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|++|+|.|. |.+|+.+|+.|++.|++|+.++
T Consensus 5 ~~~~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 40 (260)
T PRK06523 5 LELAGKRALVTGGTKGIGAATVARLLEAGARVVTTA 40 (260)
T ss_pred cCCCCCEEEEECCCCchhHHHHHHHHHCCCEEEEEe
Confidence 4688999999995 8999999999999999988654
No 209
>PRK03369 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.51 E-value=1.4 Score=48.06 Aligned_cols=34 Identities=38% Similarity=0.600 Sum_probs=31.0
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.|++|+|.|+|..|..++++|...|++|+ ++|.
T Consensus 10 ~~~~~v~V~G~G~sG~aa~~~L~~~G~~v~-~~D~ 43 (488)
T PRK03369 10 LPGAPVLVAGAGVTGRAVLAALTRFGARPT-VCDD 43 (488)
T ss_pred cCCCeEEEEcCCHHHHHHHHHHHHCCCEEE-EEcC
Confidence 468999999999999999999999999986 6885
No 210
>KOG0069 consensus Glyoxylate/hydroxypyruvate reductase (D-isomer-specific 2-hydroxy acid dehydrogenase superfamily) [Energy production and conversion]
Probab=84.50 E-value=1.2 Score=47.30 Aligned_cols=34 Identities=21% Similarity=0.487 Sum_probs=30.0
Q ss_pred cCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEE
Q 010384 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPV 443 (512)
Q Consensus 410 lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVV 443 (512)
++.++.||||.|.|+|..|+..|+.|...|..+.
T Consensus 156 ~g~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~ 189 (336)
T KOG0069|consen 156 LGYDLEGKTVGILGLGRIGKAIAKRLKPFGCVIL 189 (336)
T ss_pred ccccccCCEEEEecCcHHHHHHHHhhhhccceee
Confidence 4678999999999999999999999999994443
No 211
>PRK13394 3-hydroxybutyrate dehydrogenase; Provisional
Probab=84.39 E-value=1.7 Score=41.61 Aligned_cols=34 Identities=26% Similarity=0.347 Sum_probs=30.1
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++|++++|.|. |.+|+++++.|++.|++|+.++
T Consensus 4 ~~~~~~vlItGasg~iG~~la~~l~~~G~~v~~~~ 38 (262)
T PRK13394 4 NLNGKTAVVTGAASGIGKEIALELARAGAAVAIAD 38 (262)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEe
Confidence 467899999997 9999999999999999988553
No 212
>PRK07774 short chain dehydrogenase; Provisional
Probab=84.35 E-value=1.8 Score=41.29 Aligned_cols=34 Identities=26% Similarity=0.320 Sum_probs=30.1
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++++|.|. |-+|.++++.|.+.|++|+.++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~vi~~~ 37 (250)
T PRK07774 3 RFDDKVAIVTGAAGGIGQAYAEALAREGASVVVAD 37 (250)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 468899999996 9999999999999999998553
No 213
>PRK08416 7-alpha-hydroxysteroid dehydrogenase; Provisional
Probab=84.25 E-value=1.9 Score=41.94 Aligned_cols=37 Identities=22% Similarity=0.286 Sum_probs=32.0
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++||+++|.|. +.+|..+|+.|.+.|++|+.++++
T Consensus 4 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~~~ 41 (260)
T PRK08416 4 NEMKGKTLVISGGTRGIGKAIVYEFAQSGVNIAFTYNS 41 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcCC
Confidence 4688999999996 889999999999999999866543
No 214
>PRK00141 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=84.24 E-value=1.5 Score=47.69 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=31.3
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+.+++|.|.|+|..|..+|+.|.+.|++| .++|.
T Consensus 12 ~~~~~~v~v~G~G~sG~a~a~~L~~~G~~V-~~~D~ 46 (473)
T PRK00141 12 QELSGRVLVAGAGVSGRGIAAMLSELGCDV-VVADD 46 (473)
T ss_pred cccCCeEEEEccCHHHHHHHHHHHHCCCEE-EEECC
Confidence 467889999999999999999999999965 58886
No 215
>cd01483 E1_enzyme_family Superfamily of activating enzymes (E1) of the ubiquitin-like proteins. This family includes classical ubiquitin-activating enzymes E1, ubiquitin-like (ubl) activating enzymes and other mechanistic homologes, like MoeB, Thif1 and others. The common reaction mechanism catalyzed by MoeB, ThiF and the E1 enzymes begins with a nucleophilic attack of the C-terminal carboxylate of MoaD, ThiS and ubiquitin, respectively, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of MoaD and ThiS.
Probab=84.22 E-value=1.5 Score=39.57 Aligned_cols=32 Identities=19% Similarity=0.307 Sum_probs=28.2
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+|+|.|.|.+|..+|+.|...|..=+.|.|.+
T Consensus 1 ~VliiG~GglGs~ia~~L~~~Gv~~i~ivD~d 32 (143)
T cd01483 1 RVLLVGLGGLGSEIALNLARSGVGKITLIDFD 32 (143)
T ss_pred CEEEECCCHHHHHHHHHHHHCCCCEEEEEcCC
Confidence 58999999999999999999998666688764
No 216
>PRK12938 acetyacetyl-CoA reductase; Provisional
Probab=84.18 E-value=1.9 Score=41.07 Aligned_cols=34 Identities=21% Similarity=0.239 Sum_probs=29.7
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
+++++++|.|. |.+|+.+|+.|.+.|++|+.+.+
T Consensus 1 ~~~k~~lVtG~s~giG~~~a~~l~~~G~~vv~~~~ 35 (246)
T PRK12938 1 MSQRIAYVTGGMGGIGTSICQRLHKDGFKVVAGCG 35 (246)
T ss_pred CCCCEEEEECCCChHHHHHHHHHHHcCCEEEEEcC
Confidence 46899999985 99999999999999999987554
No 217
>PRK06153 hypothetical protein; Provisional
Probab=83.99 E-value=1 Score=48.72 Aligned_cols=37 Identities=19% Similarity=0.293 Sum_probs=32.6
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|++++|+|.|.|-+|+++++.|++.|..=+.+.|.+
T Consensus 173 kL~~~~VaIVG~GG~GS~Va~~LAR~GVgeI~LVD~D 209 (393)
T PRK06153 173 KLEGQRIAIIGLGGTGSYILDLVAKTPVREIHLFDGD 209 (393)
T ss_pred HHhhCcEEEEcCCccHHHHHHHHHHcCCCEEEEECCC
Confidence 4688999999999999999999999998666687764
No 218
>PRK08261 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.84 E-value=6 Score=42.08 Aligned_cols=34 Identities=29% Similarity=0.374 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
..++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 206 ~~~~g~~vlItGasggIG~~la~~l~~~Ga~vi~~ 240 (450)
T PRK08261 206 RPLAGKVALVTGAARGIGAAIAEVLARDGAHVVCL 240 (450)
T ss_pred cCCCCCEEEEecCCCHHHHHHHHHHHHCCCEEEEE
Confidence 3578999999997 999999999999999999865
No 219
>PRK12742 oxidoreductase; Provisional
Probab=83.78 E-value=2.1 Score=40.49 Aligned_cols=34 Identities=18% Similarity=0.285 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++|+|.|. |.||+.+|+.|.+.|++|+.+.
T Consensus 3 ~~~~k~vlItGasggIG~~~a~~l~~~G~~v~~~~ 37 (237)
T PRK12742 3 AFTGKKVLVLGGSRGIGAAIVRRFVTDGANVRFTY 37 (237)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEec
Confidence 478999999995 8999999999999999987553
No 220
>PRK06300 enoyl-(acyl carrier protein) reductase; Provisional
Probab=83.65 E-value=1.7 Score=44.69 Aligned_cols=36 Identities=22% Similarity=0.327 Sum_probs=31.9
Q ss_pred CCCCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEEeC
Q 010384 411 NKELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 411 g~~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaVSD 447 (512)
..+++||+++|-|.| -+|+.+|+.|++.|++|| |.|
T Consensus 3 ~~~~~gk~alITGa~~~~GIG~a~A~~la~~Ga~Vv-v~~ 41 (299)
T PRK06300 3 KIDLTGKIAFIAGIGDDQGYGWGIAKALAEAGATIL-VGT 41 (299)
T ss_pred CcCCCCCEEEEeCCCCCCCHHHHHHHHHHHCCCEEE-EEe
Confidence 457899999999996 799999999999999997 554
No 221
>PRK09072 short chain dehydrogenase; Provisional
Probab=83.65 E-value=2 Score=41.65 Aligned_cols=34 Identities=38% Similarity=0.488 Sum_probs=30.0
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.| .|-+|..+++.|++.|++|+.++
T Consensus 2 ~~~~~~vlItG~s~~iG~~ia~~l~~~G~~V~~~~ 36 (263)
T PRK09072 2 DLKDKRVLLTGASGGIGQALAEALAAAGARLLLVG 36 (263)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEE
Confidence 46789999999 59999999999999999988654
No 222
>COG2344 AT-rich DNA-binding protein [General function prediction only]
Probab=83.62 E-value=2.4 Score=42.09 Aligned_cols=76 Identities=14% Similarity=0.198 Sum_probs=52.6
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHH--HHCCCEEEEEeCCCceeeC--CCCCCHhhHHHHHHHH
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKL--IAYGAIPVSVSDAKGYLVD--EDGFDYMKISFLRDIK 470 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L--~e~GakVVaVSDs~G~Iyd--p~GLDie~L~~L~e~K 470 (512)
-||-|-+..+++.+.+|.+ +-..++|+|.||.|++++.+- .+.|.+++++-|.+...+- -.++.+..++.|....
T Consensus 64 ~GYnV~~L~~ff~~~Lg~~-~~tnviiVG~GnlG~All~Y~f~~~~~~~iv~~FDv~~~~VG~~~~~v~V~~~d~le~~v 142 (211)
T COG2344 64 YGYNVKYLRDFFDDLLGQD-KTTNVIIVGVGNLGRALLNYNFSKKNGMKIVAAFDVDPDKVGTKIGDVPVYDLDDLEKFV 142 (211)
T ss_pred CCccHHHHHHHHHHHhCCC-cceeEEEEccChHHHHHhcCcchhhcCceEEEEecCCHHHhCcccCCeeeechHHHHHHH
Confidence 4777777777777777765 336799999999999988653 3579999999998643321 1235555554455544
Q ss_pred H
Q 010384 471 S 471 (512)
Q Consensus 471 ~ 471 (512)
+
T Consensus 143 ~ 143 (211)
T COG2344 143 K 143 (211)
T ss_pred H
Confidence 3
No 223
>PRK06172 short chain dehydrogenase; Provisional
Probab=83.43 E-value=2.1 Score=41.05 Aligned_cols=35 Identities=20% Similarity=0.195 Sum_probs=30.5
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
..+++++++|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 3 ~~l~~k~ilItGas~~iG~~ia~~l~~~G~~v~~~~ 38 (253)
T PRK06172 3 MTFSGKVALVTGGAAGIGRATALAFAREGAKVVVAD 38 (253)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 3578999999995 8999999999999999988554
No 224
>PRK08642 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=83.33 E-value=2.3 Score=40.57 Aligned_cols=35 Identities=17% Similarity=0.197 Sum_probs=29.9
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
.+++++++|.| .|.+|+++|+.|.+.|++|+.+.+
T Consensus 2 ~l~~k~ilItGas~gIG~~la~~l~~~G~~vv~~~~ 37 (253)
T PRK08642 2 QISEQTVLVTGGSRGLGAAIARAFAREGARVVVNYH 37 (253)
T ss_pred CCCCCEEEEeCCCCcHHHHHHHHHHHCCCeEEEEcC
Confidence 36789999998 689999999999999999985543
No 225
>KOG0068 consensus D-3-phosphoglycerate dehydrogenase, D-isomer-specific 2-hydroxy acid dehydrogenase superfamily [Amino acid transport and metabolism]
Probab=83.26 E-value=0.98 Score=48.30 Aligned_cols=35 Identities=29% Similarity=0.339 Sum_probs=32.5
Q ss_pred cCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEE
Q 010384 410 MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVS 444 (512)
Q Consensus 410 lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVa 444 (512)
+|.++.|||++|.|+|.+|+-+|..+.-.|.+||+
T Consensus 140 ~G~el~GKTLgvlG~GrIGseVA~r~k~~gm~vI~ 174 (406)
T KOG0068|consen 140 LGWELRGKTLGVLGLGRIGSEVAVRAKAMGMHVIG 174 (406)
T ss_pred eeeEEeccEEEEeecccchHHHHHHHHhcCceEEe
Confidence 47789999999999999999999999999999984
No 226
>PRK05875 short chain dehydrogenase; Provisional
Probab=83.24 E-value=2.2 Score=41.64 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=30.5
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |.+|.++++.|.+.|++|+.++
T Consensus 4 ~~~~k~vlItGasg~IG~~la~~l~~~G~~V~~~~ 38 (276)
T PRK05875 4 SFQDRTYLVTGGGSGIGKGVAAGLVAAGAAVMIVG 38 (276)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 478899999996 8999999999999999988664
No 227
>TIGR00561 pntA NAD(P) transhydrogenase, alpha subunit. In some species, such as Rhodospirillum rubrum, the alpha chain is replaced by two shorter chains, both with some homology to the full-length alpha chain modeled here. These score below the trusted cutoff.
Probab=83.10 E-value=3.2 Score=46.34 Aligned_cols=36 Identities=19% Similarity=0.310 Sum_probs=30.8
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.+.+.||+|.|+|.+|..++..+..+|++|+ +.|.+
T Consensus 161 ~vp~akVlViGaG~iGl~Aa~~ak~lGA~V~-v~d~~ 196 (511)
T TIGR00561 161 KVPPAKVLVIGAGVAGLAAIGAANSLGAIVR-AFDTR 196 (511)
T ss_pred CCCCCEEEEECCCHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 3457899999999999999999999999965 66663
No 228
>PRK08264 short chain dehydrogenase; Validated
Probab=83.08 E-value=2.1 Score=40.64 Aligned_cols=34 Identities=29% Similarity=0.452 Sum_probs=29.4
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCC-EEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGA-IPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~Ga-kVVaVS 446 (512)
++++++++|.| .|.+|+.+|+.|.+.|+ +|+.++
T Consensus 3 ~~~~~~vlItGgsg~iG~~la~~l~~~G~~~V~~~~ 38 (238)
T PRK08264 3 DIKGKVVLVTGANRGIGRAFVEQLLARGAAKVYAAA 38 (238)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCcccEEEEe
Confidence 46789999998 59999999999999999 877554
No 229
>PF01408 GFO_IDH_MocA: Oxidoreductase family, NAD-binding Rossmann fold; InterPro: IPR000683 This group of enzymes utilise NADP or NAD, and is known as the GFO/IDH/MOCA family in UniProtKB/Swiss-Prot. GFO is a glucose--fructose oxidoreductase, which converts D-glucose and D-fructose into D-gluconolactone and D-glucitol in the sorbitol-gluconate pathway. MOCA is a rhizopine catabolism protein which may catalyse the NADH-dependent dehydrogenase reaction involved in rhizopine catabolism. Other proteins belonging to this family include Gal80, a negative regulator for the expression of lactose and galactose metabolic genes; and several hypothetical proteins from yeast, Escherichia coli and Bacillus subtilis. The oxidoreductase, N-terminal domain is almost always associated with the oxidoreductase, C-terminal domain (see IPR004104 from INTERPRO).; GO: 0016491 oxidoreductase activity; PDB: 1LC0_A 1LC3_A 1GCU_A 3IP3_E 3CEA_C 3EVN_A 3NTQ_A 3NTR_B 3NT5_A 3MZ0_A ....
Probab=83.04 E-value=2.2 Score=36.59 Aligned_cols=32 Identities=28% Similarity=0.375 Sum_probs=28.0
Q ss_pred cEEEEecccHHHHHHHHHHHHC--CCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~--GakVVaVSDs 448 (512)
.||+|.|+|+.|+.-+..+.+. +.++++|+|.
T Consensus 1 i~v~iiG~G~~g~~~~~~~~~~~~~~~v~~v~d~ 34 (120)
T PF01408_consen 1 IRVGIIGAGSIGRRHLRALLRSSPDFEVVAVCDP 34 (120)
T ss_dssp EEEEEESTSHHHHHHHHHHHHTTTTEEEEEEECS
T ss_pred CEEEEECCcHHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 3799999999999888777775 6899999998
No 230
>COG0059 IlvC Ketol-acid reductoisomerase [Amino acid transport and metabolism / Coenzyme metabolism]
Probab=83.00 E-value=1.1 Score=47.19 Aligned_cols=49 Identities=27% Similarity=0.296 Sum_probs=38.3
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCcee-e---CCCCCCHhh
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYL-V---DEDGFDYMK 462 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~I-y---dp~GLDie~ 462 (512)
-|+||+|+|+|+|+=|..=|..|.+.|..|+ |.=..|+. + .++|+++-.
T Consensus 15 ~LkgK~iaIIGYGsQG~ahalNLRDSGlnVi-iGlr~g~~s~~kA~~dGf~V~~ 67 (338)
T COG0059 15 LLKGKKVAIIGYGSQGHAQALNLRDSGLNVI-IGLRKGSSSWKKAKEDGFKVYT 67 (338)
T ss_pred HhcCCeEEEEecChHHHHHHhhhhhcCCcEE-EEecCCchhHHHHHhcCCEeec
Confidence 4799999999999999999999999999875 65555544 2 456665433
No 231
>PRK12429 3-hydroxybutyrate dehydrogenase; Provisional
Probab=82.98 E-value=2.2 Score=40.72 Aligned_cols=33 Identities=30% Similarity=0.382 Sum_probs=29.2
Q ss_pred CCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
+++++|+|.| .|.+|+++|+.|.+.|++|+.+.
T Consensus 2 ~~~~~vlItG~sg~iG~~la~~l~~~g~~v~~~~ 35 (258)
T PRK12429 2 LKGKVALVTGAASGIGLEIALALAKEGAKVVIAD 35 (258)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 5688999999 69999999999999999998653
No 232
>PRK08703 short chain dehydrogenase; Provisional
Probab=82.96 E-value=2.1 Score=40.76 Aligned_cols=34 Identities=24% Similarity=0.296 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |.+|.++|+.|.+.|++|+.++
T Consensus 3 ~l~~k~vlItG~sggiG~~la~~l~~~g~~V~~~~ 37 (239)
T PRK08703 3 TLSDKTILVTGASQGLGEQVAKAYAAAGATVILVA 37 (239)
T ss_pred CCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEEe
Confidence 478899999995 8999999999999999987554
No 233
>PRK06057 short chain dehydrogenase; Provisional
Probab=82.96 E-value=2.1 Score=41.36 Aligned_cols=33 Identities=30% Similarity=0.387 Sum_probs=30.0
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.++|++|+|.|. |.+|.++++.|.+.|++|+.+
T Consensus 4 ~~~~~~vlItGasggIG~~~a~~l~~~G~~v~~~ 37 (255)
T PRK06057 4 RLAGRVAVITGGGSGIGLATARRLAAEGATVVVG 37 (255)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 378999999997 999999999999999999755
No 234
>COG0169 AroE Shikimate 5-dehydrogenase [Amino acid transport and metabolism]
Probab=82.95 E-value=5.9 Score=41.08 Aligned_cols=51 Identities=24% Similarity=0.312 Sum_probs=39.1
Q ss_pred hhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 396 GYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 396 G~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
|+|++..+++.. ...+.+|++|+|.|.|-.++.++..|.+.|++=|.|.++
T Consensus 108 ~~G~~~~L~~~~--~~~~~~~~~vlilGAGGAarAv~~aL~~~g~~~i~V~NR 158 (283)
T COG0169 108 GIGFLRALKEFG--LPVDVTGKRVLILGAGGAARAVAFALAEAGAKRITVVNR 158 (283)
T ss_pred HHHHHHHHHhcC--CCcccCCCEEEEECCcHHHHHHHHHHHHcCCCEEEEEeC
Confidence 666655544321 125678999999999999999999999999765568877
No 235
>PRK05597 molybdopterin biosynthesis protein MoeB; Validated
Probab=82.78 E-value=1.5 Score=46.18 Aligned_cols=37 Identities=22% Similarity=0.279 Sum_probs=32.9
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+.++|+|.|.|.+|..+|+.|+..|..=+.|.|.+
T Consensus 25 ~L~~~~VlivG~GGlGs~~a~~La~~Gvg~i~lvD~D 61 (355)
T PRK05597 25 SLFDAKVAVIGAGGLGSPALLYLAGAGVGHITIIDDD 61 (355)
T ss_pred HHhCCeEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 3678999999999999999999999998777788865
No 236
>COG2085 Predicted dinucleotide-binding enzymes [General function prediction only]
Probab=82.78 E-value=1.8 Score=43.22 Aligned_cols=31 Identities=16% Similarity=0.314 Sum_probs=27.9
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++++|.|.||+|..+|+.|...|..|+ |+-+
T Consensus 2 ~~~~i~GtGniG~alA~~~a~ag~eV~-igs~ 32 (211)
T COG2085 2 MIIAIIGTGNIGSALALRLAKAGHEVI-IGSS 32 (211)
T ss_pred cEEEEeccChHHHHHHHHHHhCCCeEE-EecC
Confidence 589999999999999999999999997 6644
No 237
>PRK10637 cysG siroheme synthase; Provisional
Probab=82.67 E-value=1.7 Score=47.25 Aligned_cols=36 Identities=22% Similarity=0.311 Sum_probs=32.4
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
.+|+|++|+|.|.|+||..=++.|.+.||+|+-||-
T Consensus 8 ~~l~~~~vlvvGgG~vA~rk~~~ll~~ga~v~visp 43 (457)
T PRK10637 8 CQLRDRDCLLVGGGDVAERKARLLLDAGARLTVNAL 43 (457)
T ss_pred EEcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcC
Confidence 478999999999999999999999999999976663
No 238
>PRK08993 2-deoxy-D-gluconate 3-dehydrogenase; Validated
Probab=82.64 E-value=2.2 Score=41.36 Aligned_cols=34 Identities=24% Similarity=0.277 Sum_probs=30.4
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++|++++|.|. |.+|..+|+.|.+.|++|+.+.
T Consensus 7 ~l~~k~~lItG~~~gIG~a~a~~l~~~G~~vv~~~ 41 (253)
T PRK08993 7 SLEGKVAVVTGCDTGLGQGMALGLAEAGCDIVGIN 41 (253)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEec
Confidence 588999999986 7899999999999999998763
No 239
>PRK06550 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=82.56 E-value=2.2 Score=40.32 Aligned_cols=34 Identities=21% Similarity=0.315 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
+++|++++|.| .|.+|+++++.|.+.|++|+.++
T Consensus 2 ~l~~k~~lVtGas~~iG~~ia~~l~~~G~~v~~~~ 36 (235)
T PRK06550 2 EFMTKTVLITGAASGIGLAQARAFLAQGAQVYGVD 36 (235)
T ss_pred CCCCCEEEEcCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999998 48899999999999999987553
No 240
>PRK12939 short chain dehydrogenase; Provisional
Probab=82.53 E-value=2.4 Score=40.28 Aligned_cols=34 Identities=26% Similarity=0.331 Sum_probs=30.2
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++++|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 4 ~~~~~~vlItGa~g~iG~~la~~l~~~G~~v~~~~ 38 (250)
T PRK12939 4 NLAGKRALVTGAARGLGAAFAEALAEAGATVAFND 38 (250)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHcCCEEEEEe
Confidence 477899999995 9999999999999999998663
No 241
>TIGR02622 CDP_4_6_dhtase CDP-glucose 4,6-dehydratase. Members of this protein family are CDP-glucose 4,6-dehydratase from a variety of Gram-negative and Gram-positive bacteria. Members typically are encoded next to a gene that encodes a glucose-1-phosphate cytidylyltransferase, which produces the substrate, CDP-D-glucose, used by this enzyme to produce CDP-4-keto-6-deoxyglucose.
Probab=82.49 E-value=2 Score=43.93 Aligned_cols=33 Identities=24% Similarity=0.261 Sum_probs=29.8
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++|++|+|.|. |-+|+++++.|.+.|.+|++++
T Consensus 2 ~~~k~ilItGatG~IG~~l~~~L~~~G~~V~~~~ 35 (349)
T TIGR02622 2 WQGKKVLVTGHTGFKGSWLSLWLLELGAEVYGYS 35 (349)
T ss_pred cCCCEEEEECCCChhHHHHHHHHHHCCCEEEEEe
Confidence 46899999995 9999999999999999998775
No 242
>PRK06505 enoyl-(acyl carrier protein) reductase; Provisional
Probab=82.44 E-value=2.1 Score=42.43 Aligned_cols=33 Identities=27% Similarity=0.327 Sum_probs=29.3
Q ss_pred CCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaV 445 (512)
.++||+++|.|.+ .+|..+|+.|++.|++|+.+
T Consensus 4 ~l~~k~~lVTGas~~~GIG~aiA~~la~~Ga~V~~~ 39 (271)
T PRK06505 4 LMQGKRGLIMGVANDHSIAWGIAKQLAAQGAELAFT 39 (271)
T ss_pred ccCCCEEEEeCCCCCCcHHHHHHHHHHhCCCEEEEe
Confidence 4789999999987 69999999999999998743
No 243
>PRK07411 hypothetical protein; Validated
Probab=82.38 E-value=1.5 Score=46.89 Aligned_cols=36 Identities=25% Similarity=0.315 Sum_probs=32.3
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|+..+|+|.|.|-+|..+|+.|+..|..=+.+.|.+
T Consensus 36 L~~~~VlivG~GGlG~~va~~La~~Gvg~l~lvD~D 71 (390)
T PRK07411 36 LKAASVLCIGTGGLGSPLLLYLAAAGIGRIGIVDFD 71 (390)
T ss_pred HhcCcEEEECCCHHHHHHHHHHHHcCCCEEEEECCC
Confidence 577899999999999999999999998777788864
No 244
>PRK09186 flagellin modification protein A; Provisional
Probab=82.37 E-value=2.2 Score=40.79 Aligned_cols=33 Identities=24% Similarity=0.538 Sum_probs=29.4
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++|++|+|.|. |.+|+++|+.|.+.|++|+.++
T Consensus 2 ~~~k~vlItGas~giG~~~a~~l~~~g~~v~~~~ 35 (256)
T PRK09186 2 LKGKTILITGAGGLIGSALVKAILEAGGIVIAAD 35 (256)
T ss_pred CCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 57899999996 8999999999999999998664
No 245
>PRK06522 2-dehydropantoate 2-reductase; Reviewed
Probab=82.34 E-value=1.9 Score=42.90 Aligned_cols=30 Identities=20% Similarity=0.193 Sum_probs=26.2
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
++|+|.|.|++|..+|..|.+.|..|+.+.
T Consensus 1 m~I~IiG~G~~G~~~a~~L~~~g~~V~~~~ 30 (304)
T PRK06522 1 MKIAILGAGAIGGLFGAALAQAGHDVTLVA 30 (304)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCeEEEEE
Confidence 479999999999999999999998876443
No 246
>PRK07576 short chain dehydrogenase; Provisional
Probab=82.18 E-value=2.4 Score=41.54 Aligned_cols=34 Identities=24% Similarity=0.332 Sum_probs=30.6
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |.+|..+++.|++.|++|+.++
T Consensus 6 ~~~~k~ilItGasggIG~~la~~l~~~G~~V~~~~ 40 (264)
T PRK07576 6 DFAGKNVVVVGGTSGINLGIAQAFARAGANVAVAS 40 (264)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 578999999987 8999999999999999988664
No 247
>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional
Probab=82.14 E-value=2.1 Score=43.75 Aligned_cols=34 Identities=15% Similarity=0.066 Sum_probs=29.5
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.+++|.|.|.|++|..+|+.|.+.|..|+ +.|++
T Consensus 3 ~~m~I~iiG~G~~G~~lA~~l~~~G~~V~-~~~r~ 36 (308)
T PRK14619 3 QPKTIAILGAGAWGSTLAGLASANGHRVR-VWSRR 36 (308)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 46899999999999999999999999886 55553
No 248
>PLN02256 arogenate dehydrogenase
Probab=82.04 E-value=3.1 Score=43.11 Aligned_cols=36 Identities=14% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..++++|+|.|+|++|+..|+.|.+.|.+|+++..+
T Consensus 33 ~~~~~kI~IIG~G~mG~slA~~L~~~G~~V~~~d~~ 68 (304)
T PLN02256 33 KSRKLKIGIVGFGNFGQFLAKTFVKQGHTVLATSRS 68 (304)
T ss_pred cCCCCEEEEEeeCHHHHHHHHHHHhCCCEEEEEECc
Confidence 347789999999999999999999999888865543
No 249
>PRK08945 putative oxoacyl-(acyl carrier protein) reductase; Provisional
Probab=82.03 E-value=2.2 Score=40.92 Aligned_cols=34 Identities=21% Similarity=0.176 Sum_probs=29.6
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++|+|.|. |.+|.++++.|.+.|++|+.++
T Consensus 9 ~~~~k~vlItG~~g~iG~~la~~l~~~G~~Vi~~~ 43 (247)
T PRK08945 9 LLKDRIILVTGAGDGIGREAALTYARHGATVILLG 43 (247)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCcEEEEe
Confidence 468999999985 8999999999999999998553
No 250
>PRK05876 short chain dehydrogenase; Provisional
Probab=81.99 E-value=2.4 Score=42.12 Aligned_cols=35 Identities=23% Similarity=0.351 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+++|++++|.| .|.+|+++|+.|++.|++|+ ++|.
T Consensus 3 ~~~~k~vlVTGas~gIG~ala~~La~~G~~Vv-~~~r 38 (275)
T PRK05876 3 GFPGRGAVITGGASGIGLATGTEFARRGARVV-LGDV 38 (275)
T ss_pred CcCCCEEEEeCCCchHHHHHHHHHHHCCCEEE-EEeC
Confidence 47899999998 58999999999999999987 4554
No 251
>PRK07533 enoyl-(acyl carrier protein) reductase; Provisional
Probab=81.98 E-value=2.2 Score=41.65 Aligned_cols=36 Identities=31% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++||+++|-|.+ .+|..+|+.|++.|++|+ +.|.
T Consensus 6 ~~~~~k~~lItGas~g~GIG~a~a~~la~~G~~v~-l~~r 44 (258)
T PRK07533 6 LPLAGKRGLVVGIANEQSIAWGCARAFRALGAELA-VTYL 44 (258)
T ss_pred cccCCCEEEEECCCCCCcHHHHHHHHHHHcCCEEE-EEeC
Confidence 36789999999975 699999999999999986 4444
No 252
>PRK07806 short chain dehydrogenase; Provisional
Probab=81.93 E-value=2.7 Score=40.15 Aligned_cols=35 Identities=29% Similarity=0.296 Sum_probs=30.8
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
++++++++|.|. |.+|+++++.|.+.|++|+.++.
T Consensus 3 ~~~~k~vlItGasggiG~~l~~~l~~~G~~V~~~~r 38 (248)
T PRK07806 3 DLPGKTALVTGSSRGIGADTAKILAGAGAHVVVNYR 38 (248)
T ss_pred CCCCcEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 467899999995 99999999999999999987654
No 253
>PLN02178 cinnamyl-alcohol dehydrogenase
Probab=81.75 E-value=4 Score=42.85 Aligned_cols=34 Identities=24% Similarity=0.265 Sum_probs=30.6
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.|.+|+|.|.|.||..+++.+...|++|++++++
T Consensus 178 ~g~~VlV~G~G~vG~~avq~Ak~~Ga~Vi~~~~~ 211 (375)
T PLN02178 178 SGKRLGVNGLGGLGHIAVKIGKAFGLRVTVISRS 211 (375)
T ss_pred CCCEEEEEcccHHHHHHHHHHHHcCCeEEEEeCC
Confidence 6899999999999999999999999998877543
No 254
>PRK08339 short chain dehydrogenase; Provisional
Probab=81.74 E-value=2.5 Score=41.50 Aligned_cols=34 Identities=24% Similarity=0.216 Sum_probs=30.0
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.+++||+++|.|. |.+|+.+|+.|++.|++|+.+
T Consensus 4 ~~l~~k~~lItGas~gIG~aia~~l~~~G~~V~~~ 38 (263)
T PRK08339 4 IDLSGKLAFTTASSKGIGFGVARVLARAGADVILL 38 (263)
T ss_pred cCCCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEE
Confidence 4688999999996 689999999999999998744
No 255
>PRK08936 glucose-1-dehydrogenase; Provisional
Probab=81.67 E-value=3 Score=40.37 Aligned_cols=36 Identities=17% Similarity=0.135 Sum_probs=30.9
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
.++++++++|.|. |.+|.++|+.|.+.|++||.++.
T Consensus 3 ~~~~~k~~lItGa~~gIG~~ia~~l~~~G~~vvi~~~ 39 (261)
T PRK08936 3 SDLEGKVVVITGGSTGLGRAMAVRFGKEKAKVVINYR 39 (261)
T ss_pred cCCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 4588999999985 88999999999999999885544
No 256
>PRK05867 short chain dehydrogenase; Provisional
Probab=81.65 E-value=2.5 Score=40.73 Aligned_cols=33 Identities=24% Similarity=0.367 Sum_probs=29.5
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
+++|++++|.|. |.+|..+|+.|++.|++|+.+
T Consensus 6 ~~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~ 39 (253)
T PRK05867 6 DLHGKRALITGASTGIGKRVALAYVEAGAQVAIA 39 (253)
T ss_pred cCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999996 889999999999999998744
No 257
>PRK12829 short chain dehydrogenase; Provisional
Probab=81.64 E-value=2.5 Score=40.56 Aligned_cols=34 Identities=29% Similarity=0.400 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++++++.|.|. |.+|+++++.|.+.|++|+.+.
T Consensus 8 ~~~~~~vlItGa~g~iG~~~a~~L~~~g~~V~~~~ 42 (264)
T PRK12829 8 PLDGLRVLVTGGASGIGRAIAEAFAEAGARVHVCD 42 (264)
T ss_pred ccCCCEEEEeCCCCcHHHHHHHHHHHCCCEEEEEe
Confidence 378899999996 9999999999999999987554
No 258
>COG5322 Predicted dehydrogenase [General function prediction only]
Probab=81.64 E-value=2.8 Score=43.88 Aligned_cols=51 Identities=18% Similarity=0.184 Sum_probs=44.6
Q ss_pred CCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEE
Q 010384 393 EATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPV 443 (512)
Q Consensus 393 eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVV 443 (512)
.-|.|-.+--+.+..+.+|.+|+..+|+|.|+ |.||..+|+.|.-++.+..
T Consensus 144 s~Tayaa~r~Vl~~~~~lGidlsqatvaivGa~G~Ia~~Iar~la~~~~~~~ 195 (351)
T COG5322 144 SHTAYAACRQVLKHFAQLGIDLSQATVAIVGATGDIASAIARWLAPKVGVKE 195 (351)
T ss_pred ccchHHHHHHHHHHHHHhCcCHHHCeEEEecCCchHHHHHHHHhccccCEEE
Confidence 35888888888888888999999999999998 9999999999998776554
No 259
>PLN02514 cinnamyl-alcohol dehydrogenase
Probab=81.60 E-value=4.5 Score=41.74 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=34.1
Q ss_pred HHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 407 l~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+...+....|.+|+|.|.|.||+.+++.+...|++|++++++
T Consensus 172 l~~~~~~~~g~~vlV~G~G~vG~~av~~Ak~~G~~vi~~~~~ 213 (357)
T PLN02514 172 LSHFGLKQSGLRGGILGLGGVGHMGVKIAKAMGHHVTVISSS 213 (357)
T ss_pred HHHcccCCCCCeEEEEcccHHHHHHHHHHHHCCCeEEEEeCC
Confidence 334444457899999999999999999999999998877654
No 260
>PRK12550 shikimate 5-dehydrogenase; Reviewed
Probab=81.51 E-value=4.1 Score=41.68 Aligned_cols=49 Identities=16% Similarity=0.109 Sum_probs=38.9
Q ss_pred chhHHHHHHHHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 395 TGYGLVFFAQLILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 395 TG~GV~~~i~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-++|++.++++ .+.+ .+++|+|.|.|-.|+.++..|.+.|++-|.|.+.
T Consensus 106 D~~Gf~~~L~~----~~~~-~~~~vlilGaGGaarAi~~aL~~~g~~~i~i~nR 154 (272)
T PRK12550 106 DYIAIAKLLAS----YQVP-PDLVVALRGSGGMAKAVAAALRDAGFTDGTIVAR 154 (272)
T ss_pred CHHHHHHHHHh----cCCC-CCCeEEEECCcHHHHHHHHHHHHCCCCEEEEEeC
Confidence 36777666553 3544 3579999999999999999999999976778887
No 261
>PRK07878 molybdopterin biosynthesis-like protein MoeZ; Validated
Probab=81.43 E-value=1.7 Score=46.39 Aligned_cols=36 Identities=28% Similarity=0.358 Sum_probs=32.1
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|+..+|+|.|.|-+|..+|+.|+..|..=+.|.|.+
T Consensus 40 L~~~~VlviG~GGlGs~va~~La~~Gvg~i~lvD~D 75 (392)
T PRK07878 40 LKNARVLVIGAGGLGSPTLLYLAAAGVGTLGIVEFD 75 (392)
T ss_pred HhcCCEEEECCCHHHHHHHHHHHHcCCCeEEEECCC
Confidence 577899999999999999999999998777788854
No 262
>PRK12748 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=81.33 E-value=2.3 Score=41.09 Aligned_cols=34 Identities=24% Similarity=0.169 Sum_probs=29.8
Q ss_pred CCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaVS 446 (512)
++++++|.|.|.+ .+|..+|+.|.+.|++|+.++
T Consensus 2 ~l~~k~vlItGas~~~giG~~la~~l~~~G~~vi~~~ 38 (256)
T PRK12748 2 PLMKKIALVTGASRLNGIGAAVCRRLAAKGIDIFFTY 38 (256)
T ss_pred CCCCcEEEEeCCCCCCCHHHHHHHHHHHcCCcEEEEc
Confidence 5789999999974 699999999999999998663
No 263
>PRK05600 thiamine biosynthesis protein ThiF; Validated
Probab=81.32 E-value=1.8 Score=46.04 Aligned_cols=36 Identities=22% Similarity=0.418 Sum_probs=32.5
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|+.++|+|.|.|-+|..+|+.|+..|..=+.|.|.+
T Consensus 39 l~~~~VliiG~GglG~~v~~~La~~Gvg~i~ivD~D 74 (370)
T PRK05600 39 LHNARVLVIGAGGLGCPAMQSLASAGVGTITLIDDD 74 (370)
T ss_pred hcCCcEEEECCCHHHHHHHHHHHHcCCCEEEEEeCC
Confidence 678899999999999999999999998667788875
No 264
>PLN02896 cinnamyl-alcohol dehydrogenase
Probab=81.30 E-value=2.8 Score=42.94 Aligned_cols=37 Identities=19% Similarity=0.218 Sum_probs=32.6
Q ss_pred CCCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 411 NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 411 g~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
+.+..++||+|.| .|-+|+++++.|.+.|.+|+++++
T Consensus 5 ~~~~~~~~vLVtG~~GfIG~~l~~~L~~~G~~V~~~~r 42 (353)
T PLN02896 5 GRESATGTYCVTGATGYIGSWLVKLLLQRGYTVHATLR 42 (353)
T ss_pred ccccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 4567889999999 599999999999999999997754
No 265
>TIGR03325 BphB_TodD cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase. Members of this family occur as the BphD protein of biphenyl catabolism and as the TodD protein of toluene catabolism. Members catalyze the second step in each pathway and proved interchangeable when tested; the first and fourth enzymes in each pathway confer metabolic specificity. In the context of biphenyl degradation, the enzyme acts as cis-2,3-dihydrobiphenyl-2,3-diol dehydrogenase (EC 1.3.1.56), while in toluene degradation it acts as cis-toluene dihydrodiol dehydrogenase.
Probab=81.26 E-value=2.8 Score=40.78 Aligned_cols=33 Identities=24% Similarity=0.446 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
++++++++|.|. |.+|+.+|+.|++.|++|+.+
T Consensus 2 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 35 (262)
T TIGR03325 2 RLKGEVVLVTGGASGLGRAIVDRFVAEGARVAVL 35 (262)
T ss_pred CcCCcEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 467899999985 789999999999999999855
No 266
>PRK07062 short chain dehydrogenase; Provisional
Probab=81.15 E-value=2.8 Score=40.60 Aligned_cols=34 Identities=29% Similarity=0.397 Sum_probs=30.3
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.+++|++++|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 4 ~~l~~k~~lItGas~giG~~ia~~l~~~G~~V~~~ 38 (265)
T PRK07062 4 IQLEGRVAVVTGGSSGIGLATVELLLEAGASVAIC 38 (265)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE
Confidence 4688999999996 789999999999999998754
No 267
>KOG1196 consensus Predicted NAD-dependent oxidoreductase [General function prediction only]
Probab=81.10 E-value=3.5 Score=43.64 Aligned_cols=57 Identities=23% Similarity=0.165 Sum_probs=44.3
Q ss_pred CCCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 386 SGSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 386 GGs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
=|.+|-+.-|+|--++ +. ...-+|+||.|+|. |.||+-+-++..-+|++||+++-|+
T Consensus 131 lg~lGm~glTAy~Gf~---ei----~~pk~geTv~VSaAsGAvGql~GQ~Ak~~Gc~VVGsaGS~ 188 (343)
T KOG1196|consen 131 LGLLGMPGLTAYAGFY---EI----CSPKKGETVFVSAASGAVGQLVGQFAKLMGCYVVGSAGSK 188 (343)
T ss_pred hhccCCchhHHHHHHH---Hh----cCCCCCCEEEEeeccchhHHHHHHHHHhcCCEEEEecCCh
Confidence 3666766677765443 33 33447899999995 9999999999989999999999874
No 268
>TIGR03628 arch_S11P archaeal ribosomal protein S11P. This model describes exclusively the archaeal ribosomal protein S11P. It excludes homologous ribosomal proteins S14 from eukaryotes and S11 from bacteria.
Probab=81.03 E-value=5.5 Score=36.27 Aligned_cols=64 Identities=19% Similarity=0.177 Sum_probs=54.2
Q ss_pred CCCCCCCchhHHHHHHHHHHHHc-CCCCCCcEEEEec--------ccHHHHHHHHHHHHCCCEEEEEeCCCce
Q 010384 388 SSLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGY 451 (512)
Q Consensus 388 s~gR~eATG~GV~~~i~eal~~l-g~~L~GkrVaIQG--------fGNVG~~aAe~L~e~GakVVaVSDs~G~ 451 (512)
-.|+..+|-|....+++.+.+.. ...++...|.|.| .|.-...+.+.|.+.|.+|+.|.|.+--
T Consensus 37 ~kg~kk~TpyAAq~aa~~~~~~~~~~Gi~~v~v~ikG~gg~~~~~~G~Gr~~air~l~~~glkI~~I~DvTpi 109 (114)
T TIGR03628 37 KADRDESSPYAAMQAAGRAAEKAKERGITGLHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPI 109 (114)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCCCCCCcHHHHHHHHHHCCCEEEEEEEcCCC
Confidence 34788999999998888888654 4678889999999 7788899999999999999999997543
No 269
>PRK06197 short chain dehydrogenase; Provisional
Probab=81.01 E-value=2.7 Score=42.12 Aligned_cols=36 Identities=25% Similarity=0.259 Sum_probs=31.6
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
.+++|++|+|.|. |-+|.++|+.|++.|++|+.++.
T Consensus 12 ~~~~~k~vlItGas~gIG~~~a~~l~~~G~~vi~~~r 48 (306)
T PRK06197 12 PDQSGRVAVVTGANTGLGYETAAALAAKGAHVVLAVR 48 (306)
T ss_pred ccCCCCEEEEcCCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 4678999999995 89999999999999999986653
No 270
>PLN02272 glyceraldehyde-3-phosphate dehydrogenase
Probab=80.98 E-value=3.4 Score=45.13 Aligned_cols=52 Identities=19% Similarity=0.235 Sum_probs=41.1
Q ss_pred cEEEEecccHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|-|||.+|+.+++.+.+ .+.+||+|-|.. .|.+.+..|+++-..+|.+
T Consensus 86 ~kvgInGFGRIGR~v~R~~~~~~~i~vvaINdp~--------~~~~~~ayllkyDS~hG~f 138 (421)
T PLN02272 86 TKIGINGFGRIGRLVLRIATSRDDIEVVAVNDPF--------IDAKYMAYMFKYDSTHGNF 138 (421)
T ss_pred eEEEEECcCHHHHHHHHHHhhcCCcEEEEecCCC--------CCHHHHHHHhhhccCCCCC
Confidence 499999999999999999875 689999997742 2666666777776666654
No 271
>TIGR01532 E4PD_g-proteo D-erythrose-4-phosphate dehydrogenase. Accordingly, this model is very close to the corresponding models for GAPDH, and those sequences which hit above trusted here invariably hit between trusted and noise to the GAPDH model (TIGR01534). Similarly, it may be found that there are species outside of the gamma proteobacteria which synthesize pyridoxine and have more than one aparrent GAPDH gene of which one may have E4PD activity - this may necessitate a readjustment of these models. Alternatively, some of the GAPDH enzymes may prove to be bifunctional in certain species.
Probab=80.97 E-value=3.1 Score=43.80 Aligned_cols=48 Identities=23% Similarity=0.372 Sum_probs=35.3
Q ss_pred EEEEecccHHHHHHHHHHHHCC----CEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQR 474 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~G----akVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G 474 (512)
||+|.|||.+|+.+++.|.+.+ ..|++|.|.. +.+.+..|+++-..+|
T Consensus 1 ~IaInGfGrIGR~vlr~l~e~~~~~~~~vvaInd~~---------~~~~~ayll~yDS~hg 52 (325)
T TIGR01532 1 RVAINGFGRIGRNVLRALYESGERLGIEVVALNELA---------DQASMAHLLRYDTSHG 52 (325)
T ss_pred CEEEECCCHHHHHHHHHHHhcCCCCCeEEEEEecCC---------CHHHHHHHHhhCccCC
Confidence 5899999999999999999864 8999998862 4444444555543333
No 272
>TIGR03366 HpnZ_proposed putative phosphonate catabolism associated alcohol dehydrogenase. This clade of zinc-binding alcohol dehydrogenases (members of pfam00107) are repeatedly associated with genes proposed to be involved with the catabolism of phosphonate compounds.
Probab=80.84 E-value=5.1 Score=39.74 Aligned_cols=32 Identities=34% Similarity=0.489 Sum_probs=28.4
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCE-EEEE
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSV 445 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~Gak-VVaV 445 (512)
..|.+|+|.|.|.||..+++.+...|++ |+++
T Consensus 119 ~~g~~VlV~G~G~vG~~~~~~ak~~G~~~Vi~~ 151 (280)
T TIGR03366 119 LKGRRVLVVGAGMLGLTAAAAAAAAGAARVVAA 151 (280)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCEEEEE
Confidence 3789999999999999999999999997 6655
No 273
>PF02737 3HCDH_N: 3-hydroxyacyl-CoA dehydrogenase, NAD binding domain; InterPro: IPR006176 3-hydroxyacyl-CoA dehydrogenase (1.1.1.35 from EC) (HCDH) [] is an enzyme involved in fatty acid metabolism, it catalyzes the reduction of 3-hydroxyacyl-CoA to 3-oxoacyl-CoA. Most eukaryotic cells have 2 fatty-acid beta-oxidation systems, one located in mitochondria and the other in peroxisomes. In peroxisomes 3-hydroxyacyl-CoA dehydrogenase forms, with enoyl-CoA hydratase (ECH) and 3,2-trans-enoyl-CoA isomerase (ECI) a multifunctional enzyme where the N-terminal domain bears the hydratase/isomerase activities and the C-terminal domain the dehydrogenase activity. There are two mitochondrial enzymes: one which is monofunctional and the other which is, like its peroxisomal counterpart, multifunctional. In Escherichia coli (gene fadB) and Pseudomonas fragi (gene faoA) HCDH is part of a multifunctional enzyme which also contains an ECH/ECI domain as well as a 3-hydroxybutyryl-CoA epimerase domain []. There are two major regions of similarity in the sequences of proteins of the HCDH family, the first one located in the N-terminal, corresponds to the NAD-binding site, the second one is located in the centre of the sequence. This represents the C-terminal domain which is also found in lambda crystallin. Some proteins include two copies of this domain.; GO: 0003857 3-hydroxyacyl-CoA dehydrogenase activity, 0016491 oxidoreductase activity, 0006631 fatty acid metabolic process, 0055114 oxidation-reduction process; PDB: 3K6J_A 1ZCJ_A 2X58_A 1ZEJ_A 3HDH_B 2WTB_A 1WDL_B 2D3T_B 1WDK_A 1WDM_B ....
Probab=80.79 E-value=4.9 Score=38.30 Aligned_cols=30 Identities=17% Similarity=0.233 Sum_probs=25.9
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+|+|.|.|..|...|..++..|..|+ +.|.
T Consensus 1 ~V~ViGaG~mG~~iA~~~a~~G~~V~-l~d~ 30 (180)
T PF02737_consen 1 KVAVIGAGTMGRGIAALFARAGYEVT-LYDR 30 (180)
T ss_dssp EEEEES-SHHHHHHHHHHHHTTSEEE-EE-S
T ss_pred CEEEEcCCHHHHHHHHHHHhCCCcEE-EEEC
Confidence 68999999999999999999999986 7776
No 274
>PRK05579 bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate synthase; Validated
Probab=80.75 E-value=4 Score=44.10 Aligned_cols=45 Identities=27% Similarity=0.328 Sum_probs=35.3
Q ss_pred CCCCCcEEEEecc-----------------cHHHHHHHHHHHHCCCEEEEEeCCCceeeCCCC
Q 010384 412 KELKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDAKGYLVDEDG 457 (512)
Q Consensus 412 ~~L~GkrVaIQGf-----------------GNVG~~aAe~L~e~GakVVaVSDs~G~Iydp~G 457 (512)
.+++|++|+|.|- |..|..+|+.|.+.|+.|+.++ ....+-.+.|
T Consensus 184 ~~l~gk~vlITgG~T~E~ID~VR~isN~SSG~~G~aiA~~l~~~Ga~V~~v~-~~~~~~~~~~ 245 (399)
T PRK05579 184 KDLAGKRVLITAGPTREPIDPVRYITNRSSGKMGYALARAAARRGADVTLVS-GPVNLPTPAG 245 (399)
T ss_pred cccCCCEEEEeCCCccccccceeeeccCCcchHHHHHHHHHHHCCCEEEEeC-CCccccCCCC
Confidence 5789999999986 8899999999999999998554 3333334444
No 275
>PRK06398 aldose dehydrogenase; Validated
Probab=80.68 E-value=3 Score=40.71 Aligned_cols=34 Identities=24% Similarity=0.333 Sum_probs=30.2
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++|++++|.|. |-+|..+|+.|.+.|++|+.++
T Consensus 3 ~l~gk~vlItGas~gIG~~ia~~l~~~G~~Vi~~~ 37 (258)
T PRK06398 3 GLKDKVAIVTGGSQGIGKAVVNRLKEEGSNVINFD 37 (258)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 578999999995 7899999999999999998554
No 276
>PRK06124 gluconate 5-dehydrogenase; Provisional
Probab=80.68 E-value=3 Score=40.08 Aligned_cols=35 Identities=23% Similarity=0.288 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
..++|++++|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 7 ~~~~~k~ilItGas~~IG~~la~~l~~~G~~v~~~~ 42 (256)
T PRK06124 7 FSLAGQVALVTGSARGLGFEIARALAGAGAHVLVNG 42 (256)
T ss_pred cCCCCCEEEEECCCchHHHHHHHHHHHcCCeEEEEe
Confidence 4588999999995 8999999999999999988553
No 277
>PRK12937 short chain dehydrogenase; Provisional
Probab=80.66 E-value=3.4 Score=39.17 Aligned_cols=35 Identities=20% Similarity=0.208 Sum_probs=30.3
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
.+++++++|.|. |.+|+++|+.|.+.|++|+.+..
T Consensus 2 ~~~~~~vlItG~~~~iG~~la~~l~~~g~~v~~~~~ 37 (245)
T PRK12937 2 TLSNKVAIVTGASRGIGAAIARRLAADGFAVAVNYA 37 (245)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEecC
Confidence 468899999984 99999999999999999876543
No 278
>PLN03096 glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=80.63 E-value=3.5 Score=44.74 Aligned_cols=50 Identities=18% Similarity=0.216 Sum_probs=39.0
Q ss_pred cEEEEecccHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~---GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~ 475 (512)
.+|+|-|||-||+.+.+.|.+. ...|++|-|.. |++.+..|+.+-..+|.
T Consensus 61 ~kVaInGfGrIGR~vlr~l~~~~~~~~evvaINd~~---------~~~~~ayLl~yDS~hG~ 113 (395)
T PLN03096 61 IKVAINGFGRIGRNFLRCWHGRKDSPLDVVAINDTG---------GVKQASHLLKYDSTLGT 113 (395)
T ss_pred cEEEEECcCHHHHHHHHHHHhCCCCCeEEEEEcCCC---------CHHHHHHHHhhcccCCC
Confidence 6899999999999999999875 46899987752 56666667777555544
No 279
>PRK00421 murC UDP-N-acetylmuramate--L-alanine ligase; Provisional
Probab=80.61 E-value=2.3 Score=45.79 Aligned_cols=35 Identities=31% Similarity=0.265 Sum_probs=31.1
Q ss_pred CCCcEEEEecccHHHHH-HHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMH-VLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~-aAe~L~e~GakVVaVSDs~ 449 (512)
.++++|.|.|.|..|.. +|++|.+.|++|. ++|.+
T Consensus 5 ~~~~~v~viG~G~sG~s~~a~~L~~~G~~V~-~~D~~ 40 (461)
T PRK00421 5 RRIKRIHFVGIGGIGMSGLAEVLLNLGYKVS-GSDLK 40 (461)
T ss_pred CCCCEEEEEEEchhhHHHHHHHHHhCCCeEE-EECCC
Confidence 46789999999999999 6999999999985 88874
No 280
>TIGR03736 PRTRC_ThiF PRTRC system ThiF family protein. A novel genetic system characterized by six major proteins, included a ParB homolog and a ThiF homolog, is designated PRTRC, or ParB-Related,ThiF-Related Cassette. This family is the PRTRC system ThiF family protein.
Probab=80.60 E-value=2.2 Score=43.30 Aligned_cols=26 Identities=19% Similarity=0.326 Sum_probs=23.8
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGA 440 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~Ga 440 (512)
+..+|+|.|.|-+|.++++.|++.|.
T Consensus 10 ~~~~V~vvG~GGlGs~v~~~Lar~G~ 35 (244)
T TIGR03736 10 RPVSVVLVGAGGTGSQVIAGLARLHH 35 (244)
T ss_pred CCCeEEEEcCChHHHHHHHHHHHccc
Confidence 56899999999999999999999863
No 281
>PRK12769 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=80.51 E-value=2.3 Score=48.13 Aligned_cols=33 Identities=21% Similarity=0.308 Sum_probs=30.0
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.|++|+|+|.|..|..+|..|.+.|++|+ |.|.
T Consensus 326 ~~~~VaIIGaGpAGLsaA~~L~~~G~~V~-V~E~ 358 (654)
T PRK12769 326 SDKRVAIIGAGPAGLACADVLARNGVAVT-VYDR 358 (654)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 68999999999999999999999999975 6665
No 282
>PRK07326 short chain dehydrogenase; Provisional
Probab=80.36 E-value=3 Score=39.40 Aligned_cols=33 Identities=27% Similarity=0.387 Sum_probs=28.8
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+.+++|+|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 4 ~~~~~ilItGatg~iG~~la~~l~~~g~~V~~~~ 37 (237)
T PRK07326 4 LKGKVALITGGSKGIGFAIAEALLAEGYKVAITA 37 (237)
T ss_pred CCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEee
Confidence 56789999985 9999999999999999988654
No 283
>PRK08762 molybdopterin biosynthesis protein MoeB; Validated
Probab=80.35 E-value=1.9 Score=45.59 Aligned_cols=37 Identities=22% Similarity=0.265 Sum_probs=33.3
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|++++|+|.|.|-+|..+|+.|+..|..=+.+.|.+
T Consensus 132 ~l~~~~VlvvG~GG~Gs~ia~~La~~Gvg~i~lvD~d 168 (376)
T PRK08762 132 RLLEARVLLIGAGGLGSPAALYLAAAGVGTLGIVDHD 168 (376)
T ss_pred HHhcCcEEEECCCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 4788999999999999999999999998767788875
No 284
>cd08231 MDR_TM0436_like Hypothetical enzyme TM0436 resembles the zinc-dependent alcohol dehydrogenases (ADH). This group contains the hypothetical TM0436 alcohol dehydrogenase from Thermotoga maritima, proteins annotated as 5-exo-alcohol dehydrogenase, and other members of the medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. MDR, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH), quino
Probab=80.35 E-value=5.3 Score=40.71 Aligned_cols=41 Identities=20% Similarity=0.231 Sum_probs=33.2
Q ss_pred HHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCC-EEEEEeC
Q 010384 407 LADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSD 447 (512)
Q Consensus 407 l~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~Ga-kVVaVSD 447 (512)
+...+.--.|.+|.|.|.|.||+.+++.+...|+ +|++++.
T Consensus 169 l~~~~~~~~g~~vlI~g~g~vG~~~~~lak~~G~~~v~~~~~ 210 (361)
T cd08231 169 LDRAGPVGAGDTVVVQGAGPLGLYAVAAAKLAGARRVIVIDG 210 (361)
T ss_pred HHhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 3444443478999999999999999999999999 8886654
No 285
>PRK15181 Vi polysaccharide biosynthesis protein TviC; Provisional
Probab=80.34 E-value=2.6 Score=43.31 Aligned_cols=36 Identities=22% Similarity=0.349 Sum_probs=31.8
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
.-++.++|.|.|. |-+|+++++.|.+.|..|+++.-
T Consensus 11 ~~~~~~~vlVtGatGfiG~~lv~~L~~~g~~V~~~d~ 47 (348)
T PRK15181 11 LVLAPKRWLITGVAGFIGSGLLEELLFLNQTVIGLDN 47 (348)
T ss_pred ccccCCEEEEECCccHHHHHHHHHHHHCCCEEEEEeC
Confidence 3567899999995 99999999999999999998853
No 286
>PRK08213 gluconate 5-dehydrogenase; Provisional
Probab=80.27 E-value=3.1 Score=40.21 Aligned_cols=34 Identities=26% Similarity=0.385 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |.+|.++|+.|.+.|++|+.+.
T Consensus 9 ~~~~k~ilItGa~g~IG~~la~~l~~~G~~V~~~~ 43 (259)
T PRK08213 9 DLSGKTALVTGGSRGLGLQIAEALGEAGARVVLSA 43 (259)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHcCCEEEEEe
Confidence 478999999994 9999999999999999987553
No 287
>PRK12771 putative glutamate synthase (NADPH) small subunit; Provisional
Probab=80.26 E-value=2.3 Score=47.11 Aligned_cols=34 Identities=24% Similarity=0.281 Sum_probs=30.3
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|++|+|+|.|.+|..+|..|.+.|++|+ |.|.
T Consensus 135 ~~g~~V~VIGaGpaGL~aA~~l~~~G~~V~-v~e~ 168 (564)
T PRK12771 135 DTGKRVAVIGGGPAGLSAAYHLRRMGHAVT-IFEA 168 (564)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCeEE-EEec
Confidence 468999999999999999999999999976 6664
No 288
>PRK09260 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=80.25 E-value=4 Score=41.15 Aligned_cols=31 Identities=19% Similarity=0.225 Sum_probs=27.7
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|.+|...|..|++.|..|+ +-|.
T Consensus 2 ~~V~VIG~G~mG~~iA~~la~~G~~V~-~~d~ 32 (288)
T PRK09260 2 EKLVVVGAGVMGRGIAYVFAVSGFQTT-LVDI 32 (288)
T ss_pred cEEEEECccHHHHHHHHHHHhCCCcEE-EEeC
Confidence 479999999999999999999999887 5566
No 289
>PRK06463 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=80.23 E-value=3.6 Score=39.73 Aligned_cols=35 Identities=20% Similarity=0.299 Sum_probs=30.4
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
..++|++++|.|. |-+|+.+|+.|.+.|++|+.+.
T Consensus 3 ~~l~~k~~lItGas~gIG~~~a~~l~~~G~~v~~~~ 38 (255)
T PRK06463 3 MRFKGKVALITGGTRGIGRAIAEAFLREGAKVAVLY 38 (255)
T ss_pred CCcCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 3578899999984 9999999999999999998654
No 290
>PLN02653 GDP-mannose 4,6-dehydratase
Probab=80.23 E-value=2.5 Score=42.92 Aligned_cols=34 Identities=15% Similarity=0.137 Sum_probs=31.0
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++|.|.|. |-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~~~vlVTGatGfiG~~l~~~L~~~G~~V~~~~ 37 (340)
T PLN02653 3 DPPRKVALITGITGQDGSYLTEFLLSKGYEVHGII 37 (340)
T ss_pred CCCCCEEEEECCCCccHHHHHHHHHHCCCEEEEEe
Confidence 578999999995 9999999999999999998774
No 291
>PRK07890 short chain dehydrogenase; Provisional
Probab=80.10 E-value=2.8 Score=40.16 Aligned_cols=32 Identities=31% Similarity=0.255 Sum_probs=28.7
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
+++++|+|.|. |.+|+++|+.|++.|++|+.+
T Consensus 3 l~~k~vlItGa~~~IG~~la~~l~~~G~~V~~~ 35 (258)
T PRK07890 3 LKGKVVVVSGVGPGLGRTLAVRAARAGADVVLA 35 (258)
T ss_pred cCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 57899999995 899999999999999998744
No 292
>PRK09607 rps11p 30S ribosomal protein S11P; Reviewed
Probab=80.08 E-value=6.4 Score=36.77 Aligned_cols=65 Identities=20% Similarity=0.190 Sum_probs=54.6
Q ss_pred CCCCCCCchhHHHHHHHHHHHHc-CCCCCCcEEEEec--------ccHHHHHHHHHHHHCCCEEEEEeCCCcee
Q 010384 388 SSLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSG--------SGKIAMHVLEKLIAYGAIPVSVSDAKGYL 452 (512)
Q Consensus 388 s~gR~eATG~GV~~~i~eal~~l-g~~L~GkrVaIQG--------fGNVG~~aAe~L~e~GakVVaVSDs~G~I 452 (512)
-.|+..+|-|....+++.+.+.. ...++...|.|-| .|.-...+.+.|.+.|.+|+.|.|.+---
T Consensus 44 ~kg~kK~TpyAAq~aae~~~~~~~~~Gi~~v~v~vkG~Ggn~~~~~G~Gr~~airal~~~glkI~~I~DvTpiP 117 (132)
T PRK09607 44 KADRDESSPYAAMQAAEKAAEDAKEKGITGVHIKVRAPGGNGQKSPGPGAQAAIRALARAGLRIGRIEDVTPIP 117 (132)
T ss_pred eCCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEEecCCCCCcCCCCcHHHHHHHHHHCCCEEEEEEEcCCCC
Confidence 34778899999998888888654 4678889999999 78888899999999999999999985433
No 293
>PRK09135 pteridine reductase; Provisional
Probab=80.04 E-value=3.3 Score=39.12 Aligned_cols=34 Identities=15% Similarity=0.105 Sum_probs=29.7
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
.++++|+|.|. |.+|+++++.|.+.|++|+.++-
T Consensus 4 ~~~~~vlItGa~g~iG~~l~~~l~~~g~~v~~~~r 38 (249)
T PRK09135 4 DSAKVALITGGARRIGAAIARTLHAAGYRVAIHYH 38 (249)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 46789999985 99999999999999999987753
No 294
>PF13460 NAD_binding_10: NADH(P)-binding ; PDB: 3OH8_A 3E8X_A 3GPI_A 3QVO_A 2Q46_B 1YBM_B 1XQ6_B 2Q4B_B 3EW7_A 3IUS_B ....
Probab=80.02 E-value=2.9 Score=38.20 Aligned_cols=32 Identities=16% Similarity=0.261 Sum_probs=28.3
Q ss_pred EEEecc-cHHHHHHHHHHHHCCCEEEEEeCCCc
Q 010384 419 CVVSGS-GKIAMHVLEKLIAYGAIPVSVSDAKG 450 (512)
Q Consensus 419 VaIQGf-GNVG~~aAe~L~e~GakVVaVSDs~G 450 (512)
|+|.|. |+||+.+++.|.+.|.+|++++-+..
T Consensus 1 I~V~GatG~vG~~l~~~L~~~~~~V~~~~R~~~ 33 (183)
T PF13460_consen 1 ILVFGATGFVGRALAKQLLRRGHEVTALVRSPS 33 (183)
T ss_dssp EEEETTTSHHHHHHHHHHHHTTSEEEEEESSGG
T ss_pred eEEECCCChHHHHHHHHHHHCCCEEEEEecCch
Confidence 678885 99999999999999999999986643
No 295
>cd08295 double_bond_reductase_like Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. This group includes proteins identified as the Arabidopsis alkenal double bond reductase and leukotriene B4 12-hydroxydehydrogenase. The Arabidopsis enzyme, a member of the medium chain dehydrogenase/reductase family, catalyzes the reduction of 7-8-double bond of phenylpropanal substrates as a plant defense mechanism. Prostaglandins and related eicosanoids (lipid mediators involved in host defense and inflamation) are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. Leukotriene B4 (LTB4) can be metabolized by LTB4 20-hydroxylase in
Probab=80.00 E-value=5.7 Score=40.17 Aligned_cols=35 Identities=23% Similarity=0.198 Sum_probs=30.7
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.|.+|+|.|. |.||+.+++.+..+|++|++++.+
T Consensus 150 ~~g~~VlI~Ga~G~vG~~aiqlAk~~G~~Vi~~~~~ 185 (338)
T cd08295 150 KKGETVFVSAASGAVGQLVGQLAKLKGCYVVGSAGS 185 (338)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 46899999997 999999999999999999876643
No 296
>PRK06196 oxidoreductase; Provisional
Probab=79.99 E-value=3.2 Score=41.92 Aligned_cols=36 Identities=19% Similarity=0.365 Sum_probs=31.6
Q ss_pred CCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
..+++|++|+|.|. |-+|+++|+.|++.|++|+.++
T Consensus 21 ~~~l~~k~vlITGasggIG~~~a~~L~~~G~~Vv~~~ 57 (315)
T PRK06196 21 GHDLSGKTAIVTGGYSGLGLETTRALAQAGAHVIVPA 57 (315)
T ss_pred CCCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 35678999999997 8899999999999999998654
No 297
>PRK06079 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.98 E-value=2.9 Score=40.71 Aligned_cols=33 Identities=27% Similarity=0.302 Sum_probs=29.4
Q ss_pred CCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaV 445 (512)
.++||+++|.|.+ .+|+.+|+.|++.|++|+.+
T Consensus 4 ~l~~k~~lItGas~~~gIG~a~a~~la~~G~~Vi~~ 39 (252)
T PRK06079 4 ILSGKKIVVMGVANKRSIAWGCAQAIKDQGATVIYT 39 (252)
T ss_pred ccCCCEEEEeCCCCCCchHHHHHHHHHHCCCEEEEe
Confidence 3789999999985 79999999999999999854
No 298
>PRK05653 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Validated
Probab=79.90 E-value=3.5 Score=38.73 Aligned_cols=34 Identities=29% Similarity=0.349 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++.+++|+|.|. |.+|+.+++.|++.|++|+.++
T Consensus 2 ~~~~~~ilItGasg~iG~~l~~~l~~~g~~v~~~~ 36 (246)
T PRK05653 2 SLQGKTALVTGASRGIGRAIALRLAADGAKVVIYD 36 (246)
T ss_pred CCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 456789999995 9999999999999999987554
No 299
>PRK08063 enoyl-(acyl carrier protein) reductase; Provisional
Probab=79.87 E-value=3.5 Score=39.34 Aligned_cols=34 Identities=21% Similarity=0.157 Sum_probs=29.1
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
+.|++++|.|. |.+|+.+++.|.+.|++|+.+.+
T Consensus 2 ~~~~~vlItGa~g~iG~~~a~~l~~~g~~v~~~~~ 36 (250)
T PRK08063 2 FSGKVALVTGSSRGIGKAIALRLAEEGYDIAVNYA 36 (250)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEcC
Confidence 46789999996 89999999999999999875543
No 300
>PRK07035 short chain dehydrogenase; Provisional
Probab=79.85 E-value=3.3 Score=39.75 Aligned_cols=34 Identities=29% Similarity=0.346 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++|+|.| .|.+|.++++.|.+.|++|+.++
T Consensus 5 ~l~~k~vlItGas~gIG~~l~~~l~~~G~~Vi~~~ 39 (252)
T PRK07035 5 DLTGKIALVTGASRGIGEAIAKLLAQQGAHVIVSS 39 (252)
T ss_pred ccCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEe
Confidence 57889999998 58999999999999999998664
No 301
>PRK06500 short chain dehydrogenase; Provisional
Probab=79.85 E-value=3.2 Score=39.49 Aligned_cols=34 Identities=21% Similarity=0.391 Sum_probs=29.8
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++|+|.|. |.+|+++++.|.+.|++|+.++
T Consensus 3 ~~~~k~vlItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK06500 3 RLQGKTALITGGTSGIGLETARQFLAEGARVAITG 37 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 367899999996 9999999999999999988553
No 302
>PRK08226 short chain dehydrogenase; Provisional
Probab=79.69 E-value=3.3 Score=39.98 Aligned_cols=34 Identities=18% Similarity=0.258 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++++|.| .|.+|+.+|+.|.+.|++|+.++
T Consensus 3 ~~~~~~~lItG~s~giG~~la~~l~~~G~~Vv~~~ 37 (263)
T PRK08226 3 KLTGKTALITGALQGIGEGIARVFARHGANLILLD 37 (263)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEec
Confidence 36789999998 68999999999999999988554
No 303
>PLN03154 putative allyl alcohol dehydrogenase; Provisional
Probab=79.69 E-value=5.6 Score=41.06 Aligned_cols=34 Identities=24% Similarity=0.180 Sum_probs=30.3
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
-.|.+|+|.|. |.||+.+++.+...|++|++++.
T Consensus 157 ~~g~~VlV~GaaG~vG~~aiqlAk~~G~~Vi~~~~ 191 (348)
T PLN03154 157 KKGDSVFVSAASGAVGQLVGQLAKLHGCYVVGSAG 191 (348)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEcC
Confidence 46899999998 99999999999999999987654
No 304
>PRK07814 short chain dehydrogenase; Provisional
Probab=79.68 E-value=3.2 Score=40.44 Aligned_cols=34 Identities=18% Similarity=0.197 Sum_probs=29.6
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |-+|.++++.|.+.|++|+.++
T Consensus 7 ~~~~~~vlItGasggIG~~~a~~l~~~G~~Vi~~~ 41 (263)
T PRK07814 7 RLDDQVAVVTGAGRGLGAAIALAFAEAGADVLIAA 41 (263)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 478999999996 6799999999999999998554
No 305
>TIGR03632 bact_S11 30S ribosomal protein S11. This model describes the bacterial 30S ribosomal protein S11. Cutoffs are set such that the model excludes archaeal and eukaryotic ribosomal proteins, but many chloroplast and mitochondrial equivalents of S11 are detected.
Probab=79.58 E-value=6.5 Score=35.12 Aligned_cols=65 Identities=18% Similarity=0.120 Sum_probs=52.8
Q ss_pred CCCCCCchhHHHHHHHHHHHHc-CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceee
Q 010384 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (512)
Q Consensus 389 ~gR~eATG~GV~~~i~eal~~l-g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iy 453 (512)
.++...|-|....+++.+.+.. ...++...|.+-|+|.=-..+.+.|.+.|.+|+.|.|.+..-|
T Consensus 35 kg~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~~kG~G~gr~~~ir~l~~~glkI~~I~D~T~iph 100 (108)
T TIGR03632 35 KGSKKSTPYAAQLAAEDAAKKAKEFGMKTVDVYVKGPGAGRESAIRALQAAGLEVTSIKDVTPIPH 100 (108)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 3567889998888887777653 4678889999999998778888889999999999999865444
No 306
>COG0771 MurD UDP-N-acetylmuramoylalanine-D-glutamate ligase [Cell envelope biogenesis, outer membrane]
Probab=79.50 E-value=2.2 Score=46.85 Aligned_cols=36 Identities=31% Similarity=0.474 Sum_probs=31.9
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++.+++|+|.|+|.-|..+|++|.+.|++|+ |+|.+
T Consensus 4 ~~~~~kv~V~GLG~sG~a~a~~L~~~G~~v~-v~D~~ 39 (448)
T COG0771 4 DFQGKKVLVLGLGKSGLAAARFLLKLGAEVT-VSDDR 39 (448)
T ss_pred cccCCEEEEEecccccHHHHHHHHHCCCeEE-EEcCC
Confidence 3458999999999999999999999999986 78864
No 307
>PRK07236 hypothetical protein; Provisional
Probab=79.39 E-value=3 Score=43.29 Aligned_cols=41 Identities=22% Similarity=0.091 Sum_probs=33.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVDE 455 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iydp 455 (512)
.+..+|+|+|.|-+|..+|..|.+.|.+|+ |-|..-....+
T Consensus 4 ~~~~~ViIVGaG~aGl~~A~~L~~~G~~v~-v~E~~~~~~~~ 44 (386)
T PRK07236 4 MSGPRAVVIGGSLGGLFAALLLRRAGWDVD-VFERSPTELDG 44 (386)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHhCCCCEE-EEecCCCCcCC
Confidence 456889999999999999999999999876 77765433333
No 308
>PRK12823 benD 1,6-dihydroxycyclohexa-2,4-diene-1-carboxylate dehydrogenase; Provisional
Probab=79.39 E-value=3.4 Score=39.86 Aligned_cols=36 Identities=33% Similarity=0.323 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+++++++|.|. |.+|+++|+.|.+.|++|+.+ |.
T Consensus 4 ~~~~~k~vlVtGas~gIG~~la~~l~~~G~~v~~~-~r 40 (260)
T PRK12823 4 QRFAGKVVVVTGAAQGIGRGVALRAAAEGARVVLV-DR 40 (260)
T ss_pred cccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE-eC
Confidence 3578999999986 889999999999999998844 44
No 309
>PRK08085 gluconate 5-dehydrogenase; Provisional
Probab=79.37 E-value=3.5 Score=39.68 Aligned_cols=35 Identities=26% Similarity=0.466 Sum_probs=30.2
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++++++++|.| .|.+|+.+|+.|++.|++|+ +.+.
T Consensus 6 ~l~~k~~lItGas~giG~~ia~~L~~~G~~vv-l~~r 41 (254)
T PRK08085 6 SLAGKNILITGSAQGIGFLLATGLAEYGAEII-INDI 41 (254)
T ss_pred cCCCCEEEEECCCChHHHHHHHHHHHcCCEEE-EEcC
Confidence 57899999998 48999999999999999998 4454
No 310
>PRK06171 sorbitol-6-phosphate 2-dehydrogenase; Provisional
Probab=79.27 E-value=3.3 Score=40.13 Aligned_cols=33 Identities=33% Similarity=0.545 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaV 445 (512)
++++++++|.| .|.+|..+|+.|.+.|++|+.+
T Consensus 6 ~l~~k~vlItG~s~gIG~~la~~l~~~G~~v~~~ 39 (266)
T PRK06171 6 NLQGKIIIVTGGSSGIGLAIVKELLANGANVVNA 39 (266)
T ss_pred cCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEE
Confidence 57899999999 5899999999999999999844
No 311
>PRK07200 aspartate/ornithine carbamoyltransferase family protein; Validated
Probab=79.27 E-value=84 Score=34.26 Aligned_cols=128 Identities=10% Similarity=0.084 Sum_probs=69.2
Q ss_pred CCCCceeE-ecCCCCCCCHHHHHHHHHHHHHHHHHhcCCCCCCCCC----CCCCChhhHHHHHHHHhhH---hC-----C
Q 010384 307 KLGGAAGG-SDFDPKGKSDNEIMRFCQSFMNEIHRYLGPDKDLPSE----EMGVGTREMGYLFGQYRRL---AG-----H 373 (512)
Q Consensus 307 P~GGaKGG-I~~DPk~~S~~EleR~~r~f~~eL~~~IGp~~DVPAp----DvGT~~reMawm~d~Y~~~---~g-----~ 373 (512)
+++|.+.. +.+.|...+.- +|-.++.+.=|--..+.+. .-|-+-+|.+.+...|... +. .
T Consensus 56 ~L~~~~~~~lF~epSTRTR~-------SFE~A~~~LGg~~i~l~~~~ss~~kGEsl~DTarvLs~y~D~IviR~~~~~g~ 128 (395)
T PRK07200 56 VFNSGLGISVFRDNSTRTRF-------SYASACNLLGLEVQDLDEGKSQIAHGETVRETANMISFMADVIGIRDDMYIGK 128 (395)
T ss_pred cccCCeEEEEEcCCCchhHH-------HHHHHHHHcCCCEEEcCCccccCCCCCCHHHHHHHHHHhCCEEEEecCccccc
Confidence 46778875 66677664433 4545555433333333333 3344556666666666421 10 0
Q ss_pred CCc-------cc---------CCc-ccccCCCCCCCCCchhHHHHHHHHHHHHcCC--CCCCcEEEEecc-----c---H
Q 010384 374 FQG-------SF---------TGP-RIFWSGSSLRTEATGYGLVFFAQLILADMNK--ELKGLRCVVSGS-----G---K 426 (512)
Q Consensus 374 ~~g-------~v---------TGK-pl~~GGs~gR~eATG~GV~~~i~eal~~lg~--~L~GkrVaIQGf-----G---N 426 (512)
... .. ... |+.-+++...-.--+..=++.+++ +.|. +++|+||+|.|- | |
T Consensus 129 ~~~~~~ela~~~~~~~~~~~~~~~pPVINa~~~~~HPtQaLaDl~TI~E---~~G~~~~l~g~kVaivg~~~~~~g~~~~ 205 (395)
T PRK07200 129 GNAYMREVGAAVDDGYKQGVLPQRPTLVNLQCDIDHPTQSMADLLHLIE---HFGGLENLKGKKIAMTWAYSPSYGKPLS 205 (395)
T ss_pred ccHHHHHHHHHhhhhcccccccCCCeEEECCCCCCCcHHHHHHHHHHHH---HhCCCcccCCCEEEEEeccccccCCcch
Confidence 000 00 133 444344322222222332344443 3453 589999999985 5 8
Q ss_pred HHHHHHHHHHHCCCEEEE
Q 010384 427 IAMHVLEKLIAYGAIPVS 444 (512)
Q Consensus 427 VG~~aAe~L~e~GakVVa 444 (512)
|+...+..+..+|+.|.-
T Consensus 206 Va~Sl~~~~~~lG~~v~~ 223 (395)
T PRK07200 206 VPQGIIGLMTRFGMDVTL 223 (395)
T ss_pred HHHHHHHHHHHcCCEEEE
Confidence 999999999999998863
No 312
>PLN00141 Tic62-NAD(P)-related group II protein; Provisional
Probab=79.27 E-value=3.2 Score=40.38 Aligned_cols=36 Identities=22% Similarity=0.357 Sum_probs=31.3
Q ss_pred CCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 412 KELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 412 ~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
...++++|+|.| .|.+|+.+++.|.+.|.+|++++.
T Consensus 13 ~~~~~~~ilItGasG~iG~~l~~~L~~~g~~V~~~~R 49 (251)
T PLN00141 13 ENVKTKTVFVAGATGRTGKRIVEQLLAKGFAVKAGVR 49 (251)
T ss_pred ccccCCeEEEECCCcHHHHHHHHHHHhCCCEEEEEec
Confidence 346689999999 599999999999999999988764
No 313
>COG2130 Putative NADP-dependent oxidoreductases [General function prediction only]
Probab=79.26 E-value=3.4 Score=43.73 Aligned_cols=55 Identities=25% Similarity=0.255 Sum_probs=42.4
Q ss_pred CCCCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 387 GSSLRTEATGYGLVFFAQLILADMNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 387 Gs~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
|++|-+..|+| + .|.+.+..-.|.||+|++. |.||+.+.++..-+|++||+++-+
T Consensus 129 gvLGmpG~TAY---~----gLl~igqpk~GetvvVSaAaGaVGsvvgQiAKlkG~rVVGiaGg 184 (340)
T COG2130 129 GVLGMPGLTAY---F----GLLDIGQPKAGETVVVSAAAGAVGSVVGQIAKLKGCRVVGIAGG 184 (340)
T ss_pred hhcCCchHHHH---H----HHHHhcCCCCCCEEEEEecccccchHHHHHHHhhCCeEEEecCC
Confidence 45554444443 3 3455677778999999995 999999998888899999999976
No 314
>PRK06349 homoserine dehydrogenase; Provisional
Probab=79.24 E-value=2.4 Score=45.85 Aligned_cols=36 Identities=17% Similarity=0.021 Sum_probs=29.8
Q ss_pred CcEEEEecccHHHHHHHHHHHHC----------CCEEEEEeCCCce
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAY----------GAIPVSVSDAKGY 451 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~----------GakVVaVSDs~G~ 451 (512)
-.+|+|.|+|+||+.+++.|.+. +.+|++|+|++..
T Consensus 3 ~i~VgiiG~G~VG~~~~~~L~~~~~~l~~~~g~~i~l~~V~~~~~~ 48 (426)
T PRK06349 3 PLKVGLLGLGTVGSGVVRILEENAEEIAARAGRPIEIKKVAVRDLE 48 (426)
T ss_pred eEEEEEEeeCHHHHHHHHHHHHhHHHHHHhcCCCEEEEEEEeCChh
Confidence 36899999999999999888653 5789999998643
No 315
>COG0604 Qor NADPH:quinone reductase and related Zn-dependent oxidoreductases [Energy production and conversion / General function prediction only]
Probab=79.22 E-value=3.9 Score=42.54 Aligned_cols=56 Identities=25% Similarity=0.281 Sum_probs=38.7
Q ss_pred CCCchhHHHHHHHH-HHHHc-CCCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 392 TEATGYGLVFFAQL-ILADM-NKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 392 ~eATG~GV~~~i~e-al~~l-g~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+|..+++.+++-. +|... +... |.+|.|+| .|.||+.+++++..+|+.+|+++-+
T Consensus 118 ~eAAal~~~~~TA~~~l~~~~~l~~-g~~VLV~gaaGgVG~~aiQlAk~~G~~~v~~~~s 176 (326)
T COG0604 118 EEAAALPLAGLTAWLALFDRAGLKP-GETVLVHGAAGGVGSAAIQLAKALGATVVAVVSS 176 (326)
T ss_pred HHHHHHHHHHHHHHHHHHHhcCCCC-CCEEEEecCCchHHHHHHHHHHHcCCcEEEEecC
Confidence 45666666554433 23332 2222 89999999 8999999999999999766656554
No 316
>PRK12746 short chain dehydrogenase; Provisional
Probab=79.19 E-value=3.9 Score=39.16 Aligned_cols=33 Identities=27% Similarity=0.333 Sum_probs=29.1
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaV 445 (512)
++++++++|.| .|-+|.++|+.|.+.|++|+.+
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~G~~v~i~ 36 (254)
T PRK12746 3 NLDGKVALVTGASRGIGRAIAMRLANDGALVAIH 36 (254)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 46789999999 5999999999999999998754
No 317
>PRK07831 short chain dehydrogenase; Provisional
Probab=79.19 E-value=3.1 Score=40.37 Aligned_cols=35 Identities=29% Similarity=0.359 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-c-HHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGS-G-KIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGf-G-NVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++++++|.|. | .+|..+++.|.+.|++|+ +.|.
T Consensus 14 ~~~~k~vlItG~sg~gIG~~ia~~l~~~G~~V~-~~~~ 50 (262)
T PRK07831 14 LLAGKVVLVTAAAGTGIGSATARRALEEGARVV-ISDI 50 (262)
T ss_pred ccCCCEEEEECCCcccHHHHHHHHHHHcCCEEE-EEeC
Confidence 356899999996 6 699999999999999987 4443
No 318
>KOG1257 consensus NADP+-dependent malic enzyme [Energy production and conversion]
Probab=79.17 E-value=19 Score=40.62 Aligned_cols=122 Identities=16% Similarity=0.223 Sum_probs=85.3
Q ss_pred HHHHHHHHHHHHHHHHHhcCCCCCCCCCCCCCChhhHHHHHHHHhhHhCCCCcccCCcccccCCCCCCCCCchhHHHHHH
Q 010384 324 DNEIMRFCQSFMNEIHRYLGPDKDLPSEEMGVGTREMGYLFGQYRRLAGHFQGSFTGPRIFWSGSSLRTEATGYGLVFFA 403 (512)
Q Consensus 324 ~~EleR~~r~f~~eL~~~IGp~~DVPApDvGT~~reMawm~d~Y~~~~g~~~g~vTGKpl~~GGs~gR~eATG~GV~~~i 403 (512)
..|-..|...||.+..+-.||..-|-=.|+++- |-+....+.+..+ .++... -.-||==++.++
T Consensus 234 g~eYd~~~dEFm~Av~~~yG~~~lIqFEDF~~~-----nAfrlL~kYr~~~-c~FNDD----------IQGTaaValAgl 297 (582)
T KOG1257|consen 234 GKEYDEFLDEFMEAVVQRYGPNTLIQFEDFANH-----NAFRLLEKYRNKY-CMFNDD----------IQGTAAVALAGL 297 (582)
T ss_pred ccHHHHHHHHHHHHHHHHhCcceEEEehhccch-----hHHHHHHHhcccc-ceeccc----------ccchhHHHHHHH
Confidence 457778999999999999999999999999875 4444433333322 223221 233554555667
Q ss_pred HHHHHHcCCCCCCcEEEEecccHHHHHHHHHHHH----CCC------EEEEEeCCCceeeCCC--CCCHh
Q 010384 404 QLILADMNKELKGLRCVVSGSGKIAMHVLEKLIA----YGA------IPVSVSDAKGYLVDED--GFDYM 461 (512)
Q Consensus 404 ~eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e----~Ga------kVVaVSDs~G~Iydp~--GLDie 461 (512)
-.+++..+..|+.-++++.|.|..|...|+.+.. .|. +=+-+.|++|-|.... .++..
T Consensus 298 laa~rit~~~lsd~~ilf~GAG~A~~GIA~l~v~~m~~~Gl~~eeA~kkIwlvD~~GLi~~~r~~~l~~~ 367 (582)
T KOG1257|consen 298 LAALRITGKPLSDHVILFLGAGEAALGIANLIVMAMVKEGLSEEEARKKIWLVDSKGLITKGRKASLTEE 367 (582)
T ss_pred HHHHHHhCCccccceEEEecCchHHhhHHHHHHHHHHHcCCCHHHHhccEEEEecCceeeccccCCCChh
Confidence 7777888999999999999999999999987753 452 3345778888777543 45443
No 319
>PLN02206 UDP-glucuronate decarboxylase
Probab=79.16 E-value=3 Score=45.21 Aligned_cols=36 Identities=36% Similarity=0.625 Sum_probs=31.5
Q ss_pred CCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
|..-+++||.|.|. |-||+++++.|.+.|.+|+++.
T Consensus 114 ~~~~~~~kILVTGatGfIGs~Lv~~Ll~~G~~V~~ld 150 (442)
T PLN02206 114 GLKRKGLRVVVTGGAGFVGSHLVDRLMARGDSVIVVD 150 (442)
T ss_pred ccccCCCEEEEECcccHHHHHHHHHHHHCcCEEEEEe
Confidence 44557799999995 9999999999999999999774
No 320
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=79.01 E-value=4.6 Score=42.77 Aligned_cols=36 Identities=19% Similarity=0.172 Sum_probs=30.8
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.++..++++|.|+|.+|+.+++.|.+.|..|+.| |.
T Consensus 227 ~~~~~~~iiIiG~G~~g~~l~~~L~~~~~~v~vi-d~ 262 (453)
T PRK09496 227 LEKPVKRVMIVGGGNIGYYLAKLLEKEGYSVKLI-ER 262 (453)
T ss_pred cCCCCCEEEEECCCHHHHHHHHHHHhCCCeEEEE-EC
Confidence 3456799999999999999999999999998744 44
No 321
>KOG0023 consensus Alcohol dehydrogenase, class V [Secondary metabolites biosynthesis, transport and catabolism]
Probab=79.00 E-value=3.3 Score=44.17 Aligned_cols=43 Identities=16% Similarity=0.128 Sum_probs=37.9
Q ss_pred HHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 406 al~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|++.+.. .|+++.|.|.|-+|.-++++...+|.+|++||-++
T Consensus 173 pLk~~g~~-pG~~vgI~GlGGLGh~aVq~AKAMG~rV~vis~~~ 215 (360)
T KOG0023|consen 173 PLKRSGLG-PGKWVGIVGLGGLGHMAVQYAKAMGMRVTVISTSS 215 (360)
T ss_pred hhHHcCCC-CCcEEEEecCcccchHHHHHHHHhCcEEEEEeCCc
Confidence 45666777 89999999999999999999999999999998773
No 322
>PRK12825 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.95 E-value=4 Score=38.28 Aligned_cols=36 Identities=22% Similarity=0.221 Sum_probs=30.0
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+++.++|+|.|. |.+|+.+++.|.+.|++|+.++.+
T Consensus 3 ~~~~~~vlItGasg~iG~~l~~~l~~~g~~v~~~~~~ 39 (249)
T PRK12825 3 SLMGRVALVTGAARGLGRAIALRLARAGADVVVHYRS 39 (249)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEEeCC
Confidence 356789999985 999999999999999998765544
No 323
>TIGR03206 benzo_BadH 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. Members of this protein family are the enzyme 2-hydroxycyclohexanecarboxyl-CoA dehydrogenase. The enzymatic properties were confirmed experimentally in Rhodopseudomonas palustris; the enzyme is homotetrameric, and not sensitive to oxygen. This enzyme is part of proposed pathway for degradation of benzoyl-CoA to 3-hydroxypimeloyl-CoA that differs from the analogous in Thauera aromatica. It also may occur in degradation of the non-aromatic compound cyclohexane-1-carboxylate.
Probab=78.93 E-value=3.4 Score=39.26 Aligned_cols=32 Identities=25% Similarity=0.320 Sum_probs=28.6
Q ss_pred CCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEE
Q 010384 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaV 445 (512)
|++++++|.| .|.+|+++++.|.+.|++|+.+
T Consensus 1 ~~~~~ilItGas~~iG~~la~~l~~~g~~v~~~ 33 (250)
T TIGR03206 1 LKDKTAIVTGGGGGIGGATCRRFAEEGAKVAVF 33 (250)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEe
Confidence 5789999998 4999999999999999998755
No 324
>PF02254 TrkA_N: TrkA-N domain; InterPro: IPR003148 The regulator of K+ conductance (RCK) domain is found in many ligand-gated K+ channels, most often attached to the intracellular carboxy terminus. The domain is prevalent among prokaryotic K+ channels, and also found in eukaryotic, high-conductance Ca2+-activated K+ channels (BK channels) [, , ]. Largely involved in redox-linked regulation of potassium channels, the N-terminal part of the RCK domain is predicted to be an active dehydrogenase at least in some cases []. Some have a conserved sequence motif (G-x-G-x-x-G-x(n)-[DE]) for NAD+ binding [], but others do not, reflecting the diversity of ligands for RCK domains. The C-terminal part is less conserved, being absent in some channels, such as the kefC antiporter from Escherichia coli. It is predicted to bind unidentified ligands and to regulate sulphate, sodium and other transporters. The X-ray structure of several RCK domains has been solved [, , ]. It reveals an alpha-beta fold similar to dehydrogenase enzymes. The domain forms a homodimer, producing a cleft between two lobes. It has a composite structure, with an N-terminal (RCK-N), and a C-terminal (RCK-C) subdomain. The RCK-N subdomain forms a Rossmann fold with two alpha helices on one side of a six stranded parallel beta sheet and three alpha helices on the other side. The RCK-C subdomain is an all-beta-strand fold. It forms an extention of the dimer interface and further stabilises the RCK homodimer [, , ]. Ca2+ is a ligand that opens the channel in a concentration-dependent manner. Two Ca2+ ions are located at the base of a cleft between two RCK domains, coordinated by the carboxylate groups of two glutamate residues, and by an aspartate residue [, , ]. RCK domains occur in at least five different contexts: As a single domain on the C terminus of some K+ channels (for example, many prokaryotic K+ channels). As two tandem RCK domains on the C terminus of some transporters that form gating rings (for example, eukaryotic BK channels). The gating ring has an arrangement of eight identical RCK domains, one from each of the four pore-forming subunits and four from the intracellular solution. As two domains, one at the N terminus and another at the C terminus of transporter (for example, the prokaryotic trk system potassium uptake protein A). As a soluble protein (not part of a K+ channel) consisting of two tandem RCK domains. As a soluble protein consisting of a single RCK domain. This entry represents the N-terminal subdomain of RCK.; GO: 0006813 potassium ion transport; PDB: 3L4B_E 1LSS_C 3LLV_A 2FY8_D 2AEF_A 1LNQ_E 3RBX_C 3KXD_A 2AEJ_A 3RBZ_A ....
Probab=78.92 E-value=3.7 Score=35.11 Aligned_cols=29 Identities=34% Similarity=0.416 Sum_probs=23.6
Q ss_pred EEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
|+|.|+|.+|+.+++.|.+.+.+|+ +.|.
T Consensus 1 vvI~G~g~~~~~i~~~L~~~~~~vv-vid~ 29 (116)
T PF02254_consen 1 VVIIGYGRIGREIAEQLKEGGIDVV-VIDR 29 (116)
T ss_dssp EEEES-SHHHHHHHHHHHHTTSEEE-EEES
T ss_pred eEEEcCCHHHHHHHHHHHhCCCEEE-EEEC
Confidence 6899999999999999999776787 4444
No 325
>KOG0029 consensus Amine oxidase [Secondary metabolites biosynthesis, transport and catabolism]
Probab=78.88 E-value=2.5 Score=46.97 Aligned_cols=35 Identities=23% Similarity=0.307 Sum_probs=30.0
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+.++|+|+|.|--|..+|+.|++.|.+|+ |-+.
T Consensus 12 ~~~~~~VIVIGAGiaGLsAArqL~~~G~~V~-VLEA 46 (501)
T KOG0029|consen 12 AGKKKKVIVIGAGLAGLSAARQLQDFGFDVL-VLEA 46 (501)
T ss_pred ccCCCcEEEECCcHHHHHHHHHHHHcCCceE-EEec
Confidence 4456789999999999999999999999876 6554
No 326
>TIGR01743 purR_Bsub pur operon repressor, Bacillus subtilis type. This model represents the puring operon repressor PurR of low-GC Gram-positive bacteria. This homodimeric repressor contains a large region homologous to phosphoribosyltransferases and is inhibited by 5-phosphoribosyl 1-pyrophosphate.
Probab=78.85 E-value=23 Score=36.64 Aligned_cols=32 Identities=13% Similarity=0.237 Sum_probs=26.3
Q ss_pred CCcEEEEec----ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSG----SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQG----fGNVG~~aAe~L~e~GakVVaVS 446 (512)
+|.||+|.= .|.--..+++.+.+.|++|+++.
T Consensus 193 ~G~rVLIVDDv~~TGgTi~a~i~Ll~e~Ga~VvGv~ 228 (268)
T TIGR01743 193 TGSKVLIIDDFMKAGGTINGMINLLDEFDAEVAGIG 228 (268)
T ss_pred CcCEEEEEeeecccCHHHHHHHHHHHHCCCEEEEEE
Confidence 688987753 47777888999999999998875
No 327
>PRK06935 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.82 E-value=3.6 Score=39.76 Aligned_cols=35 Identities=20% Similarity=0.188 Sum_probs=30.3
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|++|+|.|. |.+|..+|+.|.+.|++|+.++
T Consensus 11 ~~l~~k~vlItGas~gIG~~ia~~l~~~G~~v~~~~ 46 (258)
T PRK06935 11 FSLDGKVAIVTGGNTGLGQGYAVALAKAGADIIITT 46 (258)
T ss_pred ccCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3578999999996 8899999999999999987553
No 328
>PRK12481 2-deoxy-D-gluconate 3-dehydrogenase; Provisional
Probab=78.71 E-value=3.5 Score=40.04 Aligned_cols=34 Identities=24% Similarity=0.305 Sum_probs=29.8
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++||+++|.|. +.+|+.+|+.|++.|++|+.++
T Consensus 5 ~l~~k~~lItGas~gIG~aia~~l~~~G~~vv~~~ 39 (251)
T PRK12481 5 DLNGKVAIITGCNTGLGQGMAIGLAKAGADIVGVG 39 (251)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEec
Confidence 578999999984 8899999999999999998653
No 329
>PF13738 Pyr_redox_3: Pyridine nucleotide-disulphide oxidoreductase; PDB: 3D1C_A 4A9W_B 2YLX_A 2YM2_A 2YLW_A 2YLR_A 2YM1_A 2YLS_A 1W4X_A 2YLT_A ....
Probab=78.70 E-value=2.8 Score=38.81 Aligned_cols=33 Identities=33% Similarity=0.437 Sum_probs=27.5
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaV 445 (512)
+++|++|+|+|.|+-|.-+|..|++.|.+|.-+
T Consensus 164 ~~~~k~V~VVG~G~SA~d~a~~l~~~g~~V~~~ 196 (203)
T PF13738_consen 164 DFKGKRVVVVGGGNSAVDIAYALAKAGKSVTLV 196 (203)
T ss_dssp GCTTSEEEEE--SHHHHHHHHHHTTTCSEEEEE
T ss_pred hcCCCcEEEEcChHHHHHHHHHHHhhCCEEEEE
Confidence 688999999999999999999999999777533
No 330
>PRK06077 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.67 E-value=4.1 Score=38.78 Aligned_cols=35 Identities=26% Similarity=0.305 Sum_probs=29.7
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
++++++|+|.| .|-||+++++.|++.|++|+.+.+
T Consensus 3 ~~~~~~vlitGasg~iG~~l~~~l~~~g~~v~~~~~ 38 (252)
T PRK06077 3 SLKDKVVVVTGSGRGIGRAIAVRLAKEGSLVVVNAK 38 (252)
T ss_pred CCCCcEEEEeCCCChHHHHHHHHHHHCCCEEEEEeC
Confidence 46789999998 478999999999999999876554
No 331
>PRK07478 short chain dehydrogenase; Provisional
Probab=78.63 E-value=3.8 Score=39.46 Aligned_cols=34 Identities=21% Similarity=0.258 Sum_probs=29.8
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |.+|..+|+.|.+.|++|+.++
T Consensus 3 ~~~~k~~lItGas~giG~~ia~~l~~~G~~v~~~~ 37 (254)
T PRK07478 3 RLNGKVAIITGASSGIGRAAAKLFAREGAKVVVGA 37 (254)
T ss_pred CCCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 578899999995 8899999999999999988554
No 332
>PRK05866 short chain dehydrogenase; Provisional
Probab=78.63 E-value=3.8 Score=41.20 Aligned_cols=36 Identities=28% Similarity=0.413 Sum_probs=30.9
Q ss_pred CCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+.++++++++|.|. |.+|..+|+.|++.|++|+.++
T Consensus 35 ~~~~~~k~vlItGasggIG~~la~~La~~G~~Vi~~~ 71 (293)
T PRK05866 35 PVDLTGKRILLTGASSGIGEAAAEQFARRGATVVAVA 71 (293)
T ss_pred CcCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 34578899999995 9999999999999999998554
No 333
>PRK05872 short chain dehydrogenase; Provisional
Probab=78.61 E-value=3.6 Score=41.21 Aligned_cols=34 Identities=32% Similarity=0.360 Sum_probs=30.0
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.+++|++++|.|. |.+|..+|+.|.+.|++|+.+
T Consensus 5 ~~l~gk~vlItGas~gIG~~ia~~l~~~G~~V~~~ 39 (296)
T PRK05872 5 TSLAGKVVVVTGAARGIGAELARRLHARGAKLALV 39 (296)
T ss_pred CCCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 4688999999995 889999999999999998744
No 334
>PRK13304 L-aspartate dehydrogenase; Reviewed
Probab=78.58 E-value=3 Score=42.08 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.0
Q ss_pred cEEEEecccHHHHHHHHHHHHC--CCEEEEEeCCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY--GAIPVSVSDAK 449 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~--GakVVaVSDs~ 449 (512)
+||+|.|+|++|...++.|.+. +..+++|+|.+
T Consensus 2 mrIgIIG~G~iG~~ia~~l~~~~~~~elv~v~d~~ 36 (265)
T PRK13304 2 LKIGIVGCGAIASLITKAILSGRINAELYAFYDRN 36 (265)
T ss_pred CEEEEECccHHHHHHHHHHHcCCCCeEEEEEECCC
Confidence 4899999999999999998875 58889999984
No 335
>PRK01368 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=78.43 E-value=2.9 Score=45.44 Aligned_cols=33 Identities=27% Similarity=0.214 Sum_probs=29.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.|++|.|.|+|.-|..+|++|.+ |++|+ |+|.
T Consensus 4 ~~~~~v~v~G~G~sG~a~~~~L~~-g~~v~-v~D~ 36 (454)
T PRK01368 4 HTKQKIGVFGLGKTGISVYEELQN-KYDVI-VYDD 36 (454)
T ss_pred CCCCEEEEEeecHHHHHHHHHHhC-CCEEE-EECC
Confidence 468999999999999999999995 99875 8884
No 336
>PRK08594 enoyl-(acyl carrier protein) reductase; Provisional
Probab=78.42 E-value=3.4 Score=40.56 Aligned_cols=34 Identities=32% Similarity=0.277 Sum_probs=29.8
Q ss_pred CCCCCcEEEEecc---cHHHHHHHHHHHHCCCEEEEE
Q 010384 412 KELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 412 ~~L~GkrVaIQGf---GNVG~~aAe~L~e~GakVVaV 445 (512)
.+++||+++|.|. +.+|..+|+.|++.|++|+.+
T Consensus 3 ~~~~~k~~lItGa~~s~GIG~aia~~la~~G~~v~~~ 39 (257)
T PRK08594 3 LSLEGKTYVVMGVANKRSIAWGIARSLHNAGAKLVFT 39 (257)
T ss_pred cccCCCEEEEECCCCCCCHHHHHHHHHHHCCCEEEEe
Confidence 3578999999997 489999999999999998744
No 337
>PLN02662 cinnamyl-alcohol dehydrogenase family protein
Probab=78.40 E-value=3.3 Score=41.25 Aligned_cols=32 Identities=28% Similarity=0.356 Sum_probs=28.7
Q ss_pred CCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
+|++|.|.| .|-+|+++++.|.+.|.+|+++.
T Consensus 3 ~~~~ilVtGatGfIG~~l~~~L~~~g~~V~~~~ 35 (322)
T PLN02662 3 EGKVVCVTGASGYIASWLVKLLLQRGYTVKATV 35 (322)
T ss_pred CCCEEEEECChHHHHHHHHHHHHHCCCEEEEEE
Confidence 468999999 59999999999999999998665
No 338
>PRK05309 30S ribosomal protein S11; Validated
Probab=78.32 E-value=7.4 Score=35.94 Aligned_cols=65 Identities=18% Similarity=0.141 Sum_probs=51.9
Q ss_pred CCCCCCchhHHHHHHHHHHHHc-CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceee
Q 010384 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (512)
Q Consensus 389 ~gR~eATG~GV~~~i~eal~~l-g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iy 453 (512)
.+....|-|....+++.+.+.. ...++...|.|-|+|.=...+.+.|...|.+|+.|.|.+-.=|
T Consensus 52 Kg~rK~T~~Aa~~aa~~~~~~~~~~gi~~v~v~ikG~G~Gr~~air~L~~~glkI~~I~D~Tpiph 117 (128)
T PRK05309 52 KGSRKSTPYAAQVAAEDAAKKAKEHGMKTVEVFVKGPGSGRESAIRALQAAGLEVTSIKDVTPIPH 117 (128)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 3566788888888877777553 4567889999999998778888889899999999999854433
No 339
>PRK09242 tropinone reductase; Provisional
Probab=78.27 E-value=3.8 Score=39.53 Aligned_cols=34 Identities=21% Similarity=0.445 Sum_probs=30.0
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++||+++|.|. |.+|..+++.|.+.|++|+.++
T Consensus 6 ~~~~k~~lItGa~~gIG~~~a~~l~~~G~~v~~~~ 40 (257)
T PRK09242 6 RLDGQTALITGASKGIGLAIAREFLGLGADVLIVA 40 (257)
T ss_pred ccCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEEe
Confidence 578999999985 8999999999999999987554
No 340
>PRK07856 short chain dehydrogenase; Provisional
Probab=78.23 E-value=4.2 Score=39.20 Aligned_cols=35 Identities=26% Similarity=0.358 Sum_probs=30.4
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|++++|.|. |-+|+.+|+.|++.|++|+.++
T Consensus 2 ~~~~~k~~lItGas~gIG~~la~~l~~~g~~v~~~~ 37 (252)
T PRK07856 2 LDLTGRVVLVTGGTRGIGAGIARAFLAAGATVVVCG 37 (252)
T ss_pred CCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 3578999999995 8899999999999999987553
No 341
>PRK07063 short chain dehydrogenase; Provisional
Probab=78.23 E-value=3.8 Score=39.60 Aligned_cols=33 Identities=21% Similarity=0.270 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.+++++++|.|. |-+|..+|+.|++.|++|+.+
T Consensus 4 ~l~~k~vlVtGas~gIG~~~a~~l~~~G~~vv~~ 37 (260)
T PRK07063 4 RLAGKVALVTGAAQGIGAAIARAFAREGAAVALA 37 (260)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 478999999995 889999999999999998754
No 342
>PRK07403 glyceraldehyde-3-phosphate dehydrogenase; Reviewed
Probab=78.22 E-value=4.6 Score=42.90 Aligned_cols=51 Identities=22% Similarity=0.250 Sum_probs=39.9
Q ss_pred cEEEEecccHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~---GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|=|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-..+|.+
T Consensus 2 ~ki~INGfGRIGR~~~R~~~~~~~~~~~vvaind~---------~~~~~~ayll~yDS~hg~~ 55 (337)
T PRK07403 2 IRVAINGFGRIGRNFLRCWLGRENSQLELVAINDT---------SDPRTNAHLLKYDSMLGKL 55 (337)
T ss_pred eEEEEEccChHHHHHHHHHHhccCCCeEEEEecCC---------CCHHHHHHHHhhccCCCCC
Confidence 4899999999999999997764 5889999875 2667777777776656643
No 343
>PRK05565 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.22 E-value=4 Score=38.51 Aligned_cols=33 Identities=33% Similarity=0.408 Sum_probs=29.5
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.+.+++++|.|. |.+|+.+|+.|++.|++|+.+
T Consensus 2 ~~~~~~ilI~Gasg~iG~~la~~l~~~g~~v~~~ 35 (247)
T PRK05565 2 KLMGKVAIVTGASGGIGRAIAELLAKEGAKVVIA 35 (247)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 477899999985 999999999999999999866
No 344
>PRK07792 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=78.14 E-value=3.9 Score=41.36 Aligned_cols=37 Identities=30% Similarity=0.373 Sum_probs=31.3
Q ss_pred CCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+++|++++|.|. |.+|..+|+.|++.|++|| +.|.
T Consensus 7 ~~~l~~k~~lVTGas~gIG~~ia~~L~~~Ga~Vv-~~~~ 44 (306)
T PRK07792 7 TTDLSGKVAVVTGAAAGLGRAEALGLARLGATVV-VNDV 44 (306)
T ss_pred CcCCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EecC
Confidence 35789999999985 7899999999999999987 4443
No 345
>cd01491 Ube1_repeat1 Ubiquitin activating enzyme (E1), repeat 1. E1, a highly conserved small protein present universally in eukaryotic cells, is part of cascade to attach ubiquitin (Ub) covalently to substrate proteins. This cascade consists of activating (E1), conjugating (E2), and/or ligating (E3) enzymes and then targets them for degradation by the 26S proteasome. E1 activates ubiquitin by C-terminal adenylation, and subsequently forms a highly reactive thioester bond between its catalytic cysteine and ubiquitin's C-terminus. E1 also associates with E2 and promotes ubiquitin transfer to the E2's catalytic cysteine. Ubiquitin-E1 is a single-chain protein with a weakly conserved two-fold repeat. This CD represents the first repeat of Ub-E1.
Probab=78.08 E-value=2.7 Score=43.57 Aligned_cols=36 Identities=28% Similarity=0.496 Sum_probs=32.7
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|...+|.|.|.|-+|..+|+.|+..|.+=++|.|.+
T Consensus 17 L~~s~VLIvG~gGLG~EiaKnLalaGVg~itI~D~d 52 (286)
T cd01491 17 LQKSNVLISGLGGLGVEIAKNLILAGVKSVTLHDTK 52 (286)
T ss_pred HhcCcEEEEcCCHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 577899999999999999999999999888888864
No 346
>PRK09599 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=78.06 E-value=3.1 Score=42.40 Aligned_cols=31 Identities=19% Similarity=0.250 Sum_probs=27.5
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|.|+|+|++|+..|+.|.+.|.+|+ +.|.
T Consensus 1 m~Ig~IGlG~MG~~mA~~L~~~g~~v~-v~dr 31 (301)
T PRK09599 1 MQLGMIGLGRMGGNMARRLLRGGHEVV-GYDR 31 (301)
T ss_pred CEEEEEcccHHHHHHHHHHHHCCCeEE-EEEC
Confidence 379999999999999999999999875 5666
No 347
>PLN02986 cinnamyl-alcohol dehydrogenase family protein
Probab=77.98 E-value=4.4 Score=40.70 Aligned_cols=35 Identities=26% Similarity=0.257 Sum_probs=30.5
Q ss_pred CCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|++|.|.| .|-+|+++++.|.+.|.+|+++.+.
T Consensus 3 ~~~~~vlVTGatG~iG~~l~~~L~~~g~~V~~~~r~ 38 (322)
T PLN02986 3 GGGKLVCVTGASGYIASWIVKLLLLRGYTVKATVRD 38 (322)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEECC
Confidence 4589999999 5999999999999999999876653
No 348
>cd01487 E1_ThiF_like E1_ThiF_like. Member of superfamily of activating enzymes (E1) of the ubiquitin-like proteins. The common reaction mechanism catalyzed by E1-like enzymes begins with a nucleophilic attack of the C-terminal carboxylate of the ubiquitin-like substrate, on the alpha-phosphate of an ATP molecule bound at the active site of the activating enzymes, leading to the formation of a high-energy acyladenylate intermediate and subsequently to the formation of a thiocarboxylate at the C termini of the substrate. The exact function of this family is unknown.
Probab=77.96 E-value=2.8 Score=39.81 Aligned_cols=32 Identities=16% Similarity=0.266 Sum_probs=28.3
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+|+|.|.|-+|..+|+.|.+.|..=+.+.|.+
T Consensus 1 ~VlViG~GglGs~ia~~La~~Gvg~i~lvD~D 32 (174)
T cd01487 1 KVGIAGAGGLGSNIAVLLARSGVGNLKLVDFD 32 (174)
T ss_pred CEEEECcCHHHHHHHHHHHHcCCCeEEEEeCC
Confidence 58999999999999999999998756688875
No 349
>PRK15425 gapA glyceraldehyde-3-phosphate dehydrogenase A; Provisional
Probab=77.89 E-value=6.3 Score=41.76 Aligned_cols=51 Identities=16% Similarity=0.257 Sum_probs=40.5
Q ss_pred cEEEEecccHHHHHHHHHHHH-CCCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|=|||-+|+.+.+.+.+ ....||||-|. .|++.+..|+++-..+|.+
T Consensus 3 ~~i~inGfGRIGr~~~r~~~~~~~~~vvaiNd~---------~~~~~~ayll~yDs~hg~~ 54 (331)
T PRK15425 3 IKVGINGFGRIGRIVFRAAQKRSDIEIVAINDL---------LDADYMAYMLKYDSTHGRF 54 (331)
T ss_pred eEEEEEeeChHHHHHHHHHHHCCCCEEEEEecC---------CCHHHHHHHHccccCCCCc
Confidence 489999999999999999775 46999999875 2666777777776666643
No 350
>CHL00041 rps11 ribosomal protein S11
Probab=77.89 E-value=7.9 Score=35.09 Aligned_cols=65 Identities=14% Similarity=0.109 Sum_probs=52.0
Q ss_pred CCCCCCchhHHHHHHHHHHHHc-CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceee
Q 010384 389 SLRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (512)
Q Consensus 389 ~gR~eATG~GV~~~i~eal~~l-g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iy 453 (512)
.|....|-|....+++.+++.. ...++...|.|-|+|.=-..+.+.|.+.|.+|+.|.|.+..-|
T Consensus 48 Kg~rK~T~~Aa~~~a~~~~~~~~~~gi~~v~I~ikG~G~Gr~~~ir~l~~~glkI~~I~D~Tpiph 113 (116)
T CHL00041 48 KGARKGTPFAAQTAAENAIRTVIDQGMKRAEVMIKGPGLGRDTALRAIRRSGLKLSSIRDVTPMPH 113 (116)
T ss_pred CCCccCCHHHHHHHHHHHHHHHHHcCCcEEEEEEECCCCcHHHHHHHHHHCCCEEEEEEEcCCCCC
Confidence 3566788888888887777653 4578889999999998778888889999999999999865443
No 351
>TIGR01318 gltD_gamma_fam glutamate synthase small subunit family protein, proteobacterial. This model represents one of three built for the NADPH-dependent or NADH-dependent glutamate synthase (EC 1.4.1.13 and 1.4.1.14, respectively) small subunit and homologs. TIGR01317 describes the small subunit (or equivalent region from longer forms) in eukaryotes, Gram-positive bacteria, and some other lineages, both NADH and NADPH-dependent. TIGR01316 describes a protein of similar length, from Archaea and a number of bacterial lineages, that forms glutamate synthase homotetramers without a large subunit. This model describes both glutatate synthase small subunit and closely related paralogs of unknown function from a number of gamma and alpha subdivision Proteobacteria, including E. coli.
Probab=77.82 E-value=7 Score=42.51 Aligned_cols=33 Identities=30% Similarity=0.378 Sum_probs=29.6
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++|+|+|.|..|..+|..|.+.|..|+ |.|.
T Consensus 140 ~~~~V~IIG~GpaGl~aA~~l~~~G~~V~-i~e~ 172 (467)
T TIGR01318 140 TGKRVAVIGAGPAGLACADILARAGVQVV-VFDR 172 (467)
T ss_pred CCCeEEEECCCHHHHHHHHHHHHcCCeEE-EEec
Confidence 68999999999999999999999999975 6554
No 352
>PRK08017 oxidoreductase; Provisional
Probab=77.79 E-value=3.6 Score=39.40 Aligned_cols=30 Identities=13% Similarity=0.201 Sum_probs=27.2
Q ss_pred cEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 417 LRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++|+|.|. |.+|+.+|+.|.+.|++|+.++
T Consensus 3 k~vlVtGasg~IG~~la~~l~~~g~~v~~~~ 33 (256)
T PRK08017 3 KSVLITGCSSGIGLEAALELKRRGYRVLAAC 33 (256)
T ss_pred CEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 68999998 9999999999999999998664
No 353
>PRK06194 hypothetical protein; Provisional
Probab=77.77 E-value=4 Score=40.04 Aligned_cols=34 Identities=18% Similarity=0.233 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |.+|+++|+.|.+.|++|+.+.
T Consensus 3 ~~~~k~vlVtGasggIG~~la~~l~~~G~~V~~~~ 37 (287)
T PRK06194 3 DFAGKVAVITGAASGFGLAFARIGAALGMKLVLAD 37 (287)
T ss_pred CCCCCEEEEeCCccHHHHHHHHHHHHCCCEEEEEe
Confidence 467899999985 8999999999999999987543
No 354
>PLN02695 GDP-D-mannose-3',5'-epimerase
Probab=77.56 E-value=3.4 Score=43.15 Aligned_cols=32 Identities=31% Similarity=0.492 Sum_probs=29.4
Q ss_pred CCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++||+|-|. |.||+++++.|.+.|..|++++
T Consensus 20 ~~~~IlVtGgtGfIG~~l~~~L~~~G~~V~~v~ 52 (370)
T PLN02695 20 EKLRICITGAGGFIASHIARRLKAEGHYIIASD 52 (370)
T ss_pred CCCEEEEECCccHHHHHHHHHHHhCCCEEEEEE
Confidence 5699999997 9999999999999999998875
No 355
>PRK07825 short chain dehydrogenase; Provisional
Probab=77.55 E-value=4.3 Score=39.58 Aligned_cols=33 Identities=24% Similarity=0.327 Sum_probs=29.0
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
+++|++++|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 2 ~~~~~~ilVtGasggiG~~la~~l~~~G~~v~~~ 35 (273)
T PRK07825 2 DLRGKVVAITGGARGIGLATARALAALGARVAIG 35 (273)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 577899999986 899999999999999998744
No 356
>cd08239 THR_DH_like L-threonine dehydrogenase (TDH)-like. MDR/AHD-like proteins, including a protein annotated as a threonine dehydrogenase. L-threonine dehydrogenase (TDH) catalyzes the zinc-dependent formation of 2-amino-3-ketobutyrate from L-threonine via NAD(H)-dependent oxidation. The zinc-dependent alcohol dehydrogenases (ADHs) catalyze the NAD(P)(H)-dependent interconversion of alcohols to aldehydes or ketones. Zinc-dependent ADHs are medium chain dehydrogenase/reductase type proteins (MDRs) and have a NAD(P)(H)-binding domain in a Rossmann fold of an beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. In addition to alcohol dehydrogenases, this group includes quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and generally have 2 tightly bound zinc at
Probab=77.49 E-value=6.4 Score=39.66 Aligned_cols=32 Identities=25% Similarity=0.286 Sum_probs=29.0
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCE-EEEEe
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVS 446 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~Gak-VVaVS 446 (512)
.|.+|+|.|.|.||..+++.+...|++ |++++
T Consensus 163 ~g~~vlV~G~G~vG~~~~~~ak~~G~~~vi~~~ 195 (339)
T cd08239 163 GRDTVLVVGAGPVGLGALMLARALGAEDVIGVD 195 (339)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCCEEEEEC
Confidence 489999999999999999999999999 87654
No 357
>TIGR01534 GAPDH-I glyceraldehyde-3-phosphate dehydrogenase, type I. The noise level is set relative not to E4PD, but the next closest outliers, the class II GAPDH's (found in archaea, TIGR01546) and aspartate semialdehyde dehydrogenase (ASADH, TIGR01296) both of which have highest-scoring hits around -225 to the prior model.
Probab=77.44 E-value=3.9 Score=43.15 Aligned_cols=49 Identities=20% Similarity=0.307 Sum_probs=38.7
Q ss_pred EEEEecccHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCc
Q 010384 418 RCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRS 475 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~---GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~ 475 (512)
||+|=|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-..+|.
T Consensus 1 ~i~INGfGRIGr~~~r~~~~~~~~~~~ivaind~---------~~~~~~ayll~yDS~hg~ 52 (327)
T TIGR01534 1 KVGINGFGRIGRLVLRAILEKQGLDLEVVAINDL---------TDLEYLAYLLKYDSVHGR 52 (327)
T ss_pred CEEEEccChHHHHHHHHHHhccCCceEEEEEecC---------CCHHHHHHHhcccCCCCC
Confidence 589999999999999998865 5899999875 366777677777555554
No 358
>PRK12859 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=77.41 E-value=3.6 Score=40.01 Aligned_cols=33 Identities=27% Similarity=0.272 Sum_probs=29.4
Q ss_pred CCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaV 445 (512)
.++|++|+|-|.. .+|+.+|+.|.+.|++||.+
T Consensus 3 ~l~~k~vlVtGas~~~giG~~~a~~l~~~G~~vi~~ 38 (256)
T PRK12859 3 QLKNKVAVVTGVSRLDGIGAAICKELAEAGADIFFT 38 (256)
T ss_pred CcCCcEEEEECCCCCCChHHHHHHHHHHCCCeEEEE
Confidence 5889999999974 79999999999999999854
No 359
>PRK09496 trkA potassium transporter peripheral membrane component; Reviewed
Probab=77.40 E-value=3 Score=44.12 Aligned_cols=30 Identities=13% Similarity=0.341 Sum_probs=26.9
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
++|+|.|+|++|+.+|+.|.+.|..|+.|.
T Consensus 1 m~viIiG~G~ig~~~a~~L~~~g~~v~vid 30 (453)
T PRK09496 1 MKIIIVGAGQVGYTLAENLSGENNDVTVID 30 (453)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEEEEE
Confidence 479999999999999999999999998553
No 360
>PLN02730 enoyl-[acyl-carrier-protein] reductase
Probab=77.34 E-value=3.3 Score=42.72 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=30.8
Q ss_pred CCCCCCcEEEEecc---cHHHHHHHHHHHHCCCEEEE
Q 010384 411 NKELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVS 444 (512)
Q Consensus 411 g~~L~GkrVaIQGf---GNVG~~aAe~L~e~GakVVa 444 (512)
..+|+||+++|-|. .-+|..+|+.|++.|++||.
T Consensus 4 ~~~l~gk~alITGa~~s~GIG~a~A~~la~~Ga~Vv~ 40 (303)
T PLN02730 4 PIDLRGKRAFIAGVADDNGYGWAIAKALAAAGAEILV 40 (303)
T ss_pred CcCCCCCEEEEeCCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 46799999999999 56999999999999999985
No 361
>cd08294 leukotriene_B4_DH_like 13-PGR is a bifunctional enzyme with delta-13 15-prostaglandin reductase and leukotriene B4 12 hydroxydehydrogenase activity. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto- 13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of ac
Probab=77.33 E-value=8.1 Score=38.35 Aligned_cols=35 Identities=20% Similarity=0.234 Sum_probs=30.8
Q ss_pred CCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.|.+|.|.| .|.||+.+++.+...|++|++++.+
T Consensus 142 ~~g~~vlI~ga~g~vG~~aiqlA~~~G~~vi~~~~s 177 (329)
T cd08294 142 KAGETVVVNGAAGAVGSLVGQIAKIKGCKVIGCAGS 177 (329)
T ss_pred CCCCEEEEecCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 4689999999 6999999999999999999877754
No 362
>PRK00711 D-amino acid dehydrogenase small subunit; Validated
Probab=77.29 E-value=3.3 Score=43.05 Aligned_cols=31 Identities=35% Similarity=0.334 Sum_probs=27.4
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|+|.|-||..+|..|++.|.+|+ |-|.
T Consensus 1 ~~v~IVG~Gi~Gls~A~~l~~~g~~V~-vle~ 31 (416)
T PRK00711 1 MRVVVLGSGVIGVTSAWYLAQAGHEVT-VIDR 31 (416)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCEEE-EEeC
Confidence 379999999999999999999999875 6665
No 363
>PRK05993 short chain dehydrogenase; Provisional
Probab=77.26 E-value=4 Score=40.29 Aligned_cols=32 Identities=13% Similarity=0.078 Sum_probs=28.3
Q ss_pred CCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|+|.|. |.+|+++|+.|++.|++|+.++
T Consensus 3 ~~k~vlItGasggiG~~la~~l~~~G~~Vi~~~ 35 (277)
T PRK05993 3 MKRSILITGCSSGIGAYCARALQSDGWRVFATC 35 (277)
T ss_pred CCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 3678999997 9999999999999999998654
No 364
>PRK08265 short chain dehydrogenase; Provisional
Probab=77.14 E-value=4.3 Score=39.62 Aligned_cols=33 Identities=33% Similarity=0.371 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
++++++++|.|. |-+|+.+|+.|.+.|++|+.+
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~ 36 (261)
T PRK08265 3 GLAGKVAIVTGGATLIGAAVARALVAAGARVAIV 36 (261)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEEEE
Confidence 478899999995 899999999999999998744
No 365
>PRK00683 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=77.13 E-value=3.6 Score=43.81 Aligned_cols=34 Identities=24% Similarity=0.172 Sum_probs=29.4
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+.++|.|.|+|..|..+|+.|.+.|++|+ ++|.+
T Consensus 2 ~~~~i~iiGlG~~G~slA~~l~~~G~~V~-g~D~~ 35 (418)
T PRK00683 2 GLQRVVVLGLGVTGKSIARFLAQKGVYVI-GVDKS 35 (418)
T ss_pred CCCeEEEEEECHHHHHHHHHHHHCCCEEE-EEeCC
Confidence 45789999999999999999999999865 67763
No 366
>PRK12827 short chain dehydrogenase; Provisional
Probab=76.91 E-value=4.3 Score=38.37 Aligned_cols=34 Identities=26% Similarity=0.417 Sum_probs=29.5
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.| .|-+|+++|+.|.+.|+.|+.+.
T Consensus 3 ~~~~~~ilItGasg~iG~~la~~l~~~g~~v~~~~ 37 (249)
T PRK12827 3 SLDSRRVLITGGSGGLGRAIAVRLAADGADVIVLD 37 (249)
T ss_pred CcCCCEEEEECCCChHHHHHHHHHHHCCCeEEEEc
Confidence 46789999998 59999999999999999987643
No 367
>PRK06198 short chain dehydrogenase; Provisional
Probab=76.84 E-value=4.2 Score=39.09 Aligned_cols=35 Identities=20% Similarity=0.331 Sum_probs=29.7
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCE-EEEEeCC
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAI-PVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~Gak-VVaVSDs 448 (512)
.+++++|+|.|. |.+|..+++.|.+.|++ |+ +.++
T Consensus 3 ~~~~k~vlItGa~g~iG~~la~~l~~~G~~~V~-~~~r 39 (260)
T PRK06198 3 RLDGKVALVTGGTQGLGAAIARAFAERGAAGLV-ICGR 39 (260)
T ss_pred CCCCcEEEEeCCCchHHHHHHHHHHHCCCCeEE-EEcC
Confidence 478899999995 89999999999999999 55 5554
No 368
>PLN00198 anthocyanidin reductase; Provisional
Probab=76.83 E-value=4.1 Score=41.28 Aligned_cols=34 Identities=18% Similarity=0.173 Sum_probs=29.8
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
..++++|.|-| .|-+|+++++.|.+.|++|++++
T Consensus 6 ~~~~~~vlItG~~GfIG~~l~~~L~~~g~~V~~~~ 40 (338)
T PLN00198 6 PTGKKTACVIGGTGFLASLLIKLLLQKGYAVNTTV 40 (338)
T ss_pred CCCCCeEEEECCchHHHHHHHHHHHHCCCEEEEEE
Confidence 45689999999 79999999999999999997654
No 369
>PRK07577 short chain dehydrogenase; Provisional
Probab=76.72 E-value=4.4 Score=38.24 Aligned_cols=33 Identities=15% Similarity=0.292 Sum_probs=28.7
Q ss_pred CCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
.+++++|.|. |.+|+.+++.|.+.|++|+.++-
T Consensus 2 ~~k~vlItG~s~~iG~~ia~~l~~~G~~v~~~~r 35 (234)
T PRK07577 2 SSRTVLVTGATKGIGLALSLRLANLGHQVIGIAR 35 (234)
T ss_pred CCCEEEEECCCCcHHHHHHHHHHHCCCEEEEEeC
Confidence 5788999986 89999999999999999987653
No 370
>PRK12409 D-amino acid dehydrogenase small subunit; Provisional
Probab=76.72 E-value=3.4 Score=43.14 Aligned_cols=31 Identities=23% Similarity=0.161 Sum_probs=27.7
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|+|.|-+|..+|..|++.|.+|+ |-|.
T Consensus 2 ~~vvIIGaG~~G~~~A~~La~~g~~V~-vle~ 32 (410)
T PRK12409 2 SHIAVIGAGITGVTTAYALAQRGYQVT-VFDR 32 (410)
T ss_pred CEEEEECCCHHHHHHHHHHHHCCCeEE-EEeC
Confidence 479999999999999999999999975 6665
No 371
>TIGR02818 adh_III_F_hyde S-(hydroxymethyl)glutathione dehydrogenase/class III alcohol dehydrogenase. The members of this protein family show dual function. First, they remove formaldehyde, a toxic metabolite, by acting as S-(hydroxymethyl)glutathione dehydrogenase (1.1.1.284). S-(hydroxymethyl)glutathione can form spontaneously from formaldehyde and glutathione, and so this enzyme previously was designated glutathione-dependent formaldehyde dehydrogenase. These same proteins are also designated alcohol dehydrogenase (EC 1.1.1.1) of class III, for activities that do not require glutathione; they tend to show poor activity for ethanol among their various substrate alcohols.
Probab=76.67 E-value=7.4 Score=40.32 Aligned_cols=33 Identities=21% Similarity=0.234 Sum_probs=28.9
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCC-EEEEEe
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~Ga-kVVaVS 446 (512)
-.|.+|+|.|.|.||+.+++.+...|+ +|+++.
T Consensus 184 ~~g~~VlV~G~G~iG~~a~q~Ak~~G~~~Vi~~~ 217 (368)
T TIGR02818 184 EEGDTVAVFGLGGIGLSVIQGARMAKASRIIAID 217 (368)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEc
Confidence 358999999999999999999999999 687653
No 372
>PRK03806 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.65 E-value=4.2 Score=43.34 Aligned_cols=36 Identities=25% Similarity=0.515 Sum_probs=31.7
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++.+++|.|.|+|.-|..++++|.+.|++|+ ++|.+
T Consensus 3 ~~~~~~i~v~G~G~sG~s~~~~l~~~G~~v~-~~D~~ 38 (438)
T PRK03806 3 DYQGKKVVIIGLGLTGLSCVDFFLARGVTPR-VIDTR 38 (438)
T ss_pred ccCCCEEEEEeeCHHHHHHHHHHHHCCCeEE-EEcCC
Confidence 3568899999999999999999999999875 78874
No 373
>PLN02214 cinnamoyl-CoA reductase
Probab=76.63 E-value=4.1 Score=41.90 Aligned_cols=33 Identities=24% Similarity=0.321 Sum_probs=30.1
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++++|+|.|. |-+|+++++.|.+.|.+|++++
T Consensus 8 ~~~~~vlVTGatGfIG~~l~~~L~~~G~~V~~~~ 41 (342)
T PLN02214 8 PAGKTVCVTGAGGYIASWIVKILLERGYTVKGTV 41 (342)
T ss_pred CCCCEEEEECCCcHHHHHHHHHHHHCcCEEEEEe
Confidence 57899999997 9999999999999999998765
No 374
>cd05188 MDR Medium chain reductase/dehydrogenase (MDR)/zinc-dependent alcohol dehydrogenase-like family. The medium chain reductase/dehydrogenases (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group contains a host of activities, including the founding alcohol dehydrogenase (ADH) , quinone reductase, sorbitol dehydrogenase, formaldehyde dehydrogenase, butanediol DH, ketose reductase, cinnamyl reductase, and numerous others. The zinc-dependent alcohol dehydro
Probab=76.53 E-value=10 Score=35.90 Aligned_cols=41 Identities=17% Similarity=0.152 Sum_probs=33.1
Q ss_pred HHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 408 ADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 408 ~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+..-..|.+|+|.|.|.+|+.+++.+...|++|++++.+
T Consensus 127 ~~~~~~~~~~~vli~g~~~~G~~~~~~a~~~g~~v~~~~~~ 167 (271)
T cd05188 127 RRAGVLKPGDTVLVLGAGGVGLLAAQLAKAAGARVIVTDRS 167 (271)
T ss_pred HhccCCCCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcCC
Confidence 33443357899999999999999999999999999877544
No 375
>PLN02427 UDP-apiose/xylose synthase
Probab=76.51 E-value=4.2 Score=42.28 Aligned_cols=37 Identities=27% Similarity=0.340 Sum_probs=31.8
Q ss_pred CCCCCCcEEEEecc-cHHHHHHHHHHHHC-CCEEEEEeC
Q 010384 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAY-GAIPVSVSD 447 (512)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aAe~L~e~-GakVVaVSD 447 (512)
|+.++.+||.|.|. |-+|+++++.|.+. |.+|+++..
T Consensus 9 ~~~~~~~~VlVTGgtGfIGs~lv~~L~~~~g~~V~~l~r 47 (386)
T PLN02427 9 GKPIKPLTICMIGAGGFIGSHLCEKLMTETPHKVLALDV 47 (386)
T ss_pred CCcccCcEEEEECCcchHHHHHHHHHHhcCCCEEEEEec
Confidence 56678889999995 99999999999998 589988763
No 376
>PRK05854 short chain dehydrogenase; Provisional
Probab=76.40 E-value=4.3 Score=41.21 Aligned_cols=35 Identities=29% Similarity=0.433 Sum_probs=30.3
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++|++++|.|. +-+|..+|+.|++.|++|+.++
T Consensus 10 ~~l~gk~~lITGas~GIG~~~a~~La~~G~~Vil~~ 45 (313)
T PRK05854 10 PDLSGKRAVVTGASDGLGLGLARRLAAAGAEVILPV 45 (313)
T ss_pred cccCCCEEEEeCCCChHHHHHHHHHHHCCCEEEEEe
Confidence 4688999999995 7899999999999999998543
No 377
>PRK08220 2,3-dihydroxybenzoate-2,3-dehydrogenase; Validated
Probab=76.38 E-value=5.1 Score=38.24 Aligned_cols=35 Identities=20% Similarity=0.289 Sum_probs=30.8
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++++.|.|. |.+|+.+++.|.+.|++|+.+.
T Consensus 4 ~~~~~k~vlItGas~~iG~~la~~l~~~G~~v~~~~ 39 (252)
T PRK08220 4 MDFSGKTVWVTGAAQGIGYAVALAFVEAGAKVIGFD 39 (252)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4588999999985 7899999999999999998664
No 378
>PRK02705 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=76.33 E-value=3.7 Score=43.87 Aligned_cols=31 Identities=32% Similarity=0.261 Sum_probs=28.1
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+|.|.|+|..|..+|+.|.+.|++|. ++|..
T Consensus 2 ~v~viG~G~sG~s~a~~l~~~G~~V~-~~D~~ 32 (459)
T PRK02705 2 IAHVIGLGRSGIAAARLLKAQGWEVV-VSDRN 32 (459)
T ss_pred eEEEEccCHHHHHHHHHHHHCCCEEE-EECCC
Confidence 68999999999999999999999875 88864
No 379
>PRK08589 short chain dehydrogenase; Validated
Probab=76.31 E-value=4.7 Score=39.67 Aligned_cols=33 Identities=24% Similarity=0.268 Sum_probs=29.4
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.++|++++|.|. |-+|..+|+.|.+.|++|+.+
T Consensus 3 ~l~~k~vlItGas~gIG~aia~~l~~~G~~vi~~ 36 (272)
T PRK08589 3 RLENKVAVITGASTGIGQASAIALAQEGAYVLAV 36 (272)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 368999999996 889999999999999999855
No 380
>TIGR03201 dearomat_had 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase. Members of this protein family are 6-hydroxycyclohex-1-ene-1-carbonyl-CoA dehydrogenase, an enzyme in the anaerobic metabolism of aromatic enzymes by way of benzoyl-CoA, as seen in Thauera aromatica, Geobacter metallireducens, and Azoarcus sp. The experimentally characterized form from T. aromatica uses only NAD+, not NADP+. Note that Rhodopseudomonas palustris uses a different pathway to perform a similar degradation of benzoyl-CoA to 3-hydroxpimelyl-CoA.
Probab=76.21 E-value=4.3 Score=41.50 Aligned_cols=32 Identities=28% Similarity=0.397 Sum_probs=29.1
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.|.+|+|.|.|.||+.+++.+...|++|+++.
T Consensus 166 ~g~~VlV~G~G~vG~~a~~~a~~~G~~vi~~~ 197 (349)
T TIGR03201 166 KGDLVIVIGAGGVGGYMVQTAKAMGAAVVAID 197 (349)
T ss_pred CCCEEEEECCCHHHHHHHHHHHHcCCeEEEEc
Confidence 58999999999999999999999999988664
No 381
>PF02558 ApbA: Ketopantoate reductase PanE/ApbA; InterPro: IPR013332 ApbA, the ketopantoate reductase enzyme 1.1.1.169 from EC of Salmonella typhimurium is required for the synthesis of thiamine via the alternative pyrimidine biosynthetic pathway []. Precursors to the pyrimidine moiety of thiamine are synthesized de novo by the purine biosynthetic pathway or the alternative pyrimidine biosynthetic (APB) pathway. The ApbA protein catalyzes the NADPH-specific reduction of ketopantoic acid to pantoic acid. This activity had previously been associated with the pantothenate biosynthetic gene panE []. ApbA and PanE are allelic [].; GO: 0008677 2-dehydropantoate 2-reductase activity, 0055114 oxidation-reduction process; PDB: 3EGO_B 3HWR_B 2QYT_A 1YJQ_A 1KS9_A 2OFP_A 1YON_A 3G17_E 3GHY_B 3I83_B ....
Probab=76.17 E-value=4.6 Score=36.21 Aligned_cols=30 Identities=23% Similarity=0.255 Sum_probs=26.5
Q ss_pred EEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
|+|.|.|++|...|-.|++.|..|.-++-+
T Consensus 1 I~I~G~GaiG~~~a~~L~~~g~~V~l~~r~ 30 (151)
T PF02558_consen 1 ILIIGAGAIGSLYAARLAQAGHDVTLVSRS 30 (151)
T ss_dssp EEEESTSHHHHHHHHHHHHTTCEEEEEESH
T ss_pred CEEECcCHHHHHHHHHHHHCCCceEEEEcc
Confidence 689999999999999999999998766544
No 382
>PRK00048 dihydrodipicolinate reductase; Provisional
Probab=76.16 E-value=4.1 Score=40.93 Aligned_cols=34 Identities=24% Similarity=0.423 Sum_probs=29.9
Q ss_pred cEEEEecc-cHHHHHHHHHHHH-CCCEEEEEeCCCc
Q 010384 417 LRCVVSGS-GKIAMHVLEKLIA-YGAIPVSVSDAKG 450 (512)
Q Consensus 417 krVaIQGf-GNVG~~aAe~L~e-~GakVVaVSDs~G 450 (512)
.+|+|.|+ |++|+..++.+.+ .+.++++++|.+.
T Consensus 2 mkV~IiG~~G~mG~~i~~~l~~~~~~elvav~d~~~ 37 (257)
T PRK00048 2 IKVAVAGASGRMGRELIEAVEAAEDLELVAAVDRPG 37 (257)
T ss_pred cEEEEECCCCHHHHHHHHHHHhCCCCEEEEEEecCC
Confidence 58999998 9999999998886 5799999999854
No 383
>PRK06182 short chain dehydrogenase; Validated
Probab=76.08 E-value=4.6 Score=39.50 Aligned_cols=32 Identities=19% Similarity=0.222 Sum_probs=28.6
Q ss_pred CCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++|.|. |.+|+.+|+.|.+.|++|++++
T Consensus 2 ~~k~vlItGasggiG~~la~~l~~~G~~V~~~~ 34 (273)
T PRK06182 2 QKKVALVTGASSGIGKATARRLAAQGYTVYGAA 34 (273)
T ss_pred CCCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 5789999995 8999999999999999998664
No 384
>PRK06914 short chain dehydrogenase; Provisional
Probab=76.04 E-value=4.6 Score=39.44 Aligned_cols=32 Identities=16% Similarity=0.212 Sum_probs=28.3
Q ss_pred CCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++|.| .|-+|..+|+.|.+.|++|++++
T Consensus 2 ~~k~~lItGasg~iG~~la~~l~~~G~~V~~~~ 34 (280)
T PRK06914 2 NKKIAIVTGASSGFGLLTTLELAKKGYLVIATM 34 (280)
T ss_pred CCCEEEEECCCchHHHHHHHHHHhCCCEEEEEe
Confidence 578888888 59999999999999999998775
No 385
>PRK07666 fabG 3-ketoacyl-(acyl-carrier-protein) reductase; Provisional
Probab=76.02 E-value=5.1 Score=38.08 Aligned_cols=34 Identities=21% Similarity=0.228 Sum_probs=29.1
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.| .|.+|.++++.|.+.|++|+.++
T Consensus 4 ~~~~~~vlVtG~sg~iG~~l~~~L~~~G~~Vi~~~ 38 (239)
T PRK07666 4 SLQGKNALITGAGRGIGRAVAIALAKEGVNVGLLA 38 (239)
T ss_pred cCCCCEEEEEcCCchHHHHHHHHHHHCCCEEEEEe
Confidence 46788999998 47999999999999999988553
No 386
>PRK12490 6-phosphogluconate dehydrogenase-like protein; Reviewed
Probab=75.98 E-value=3.8 Score=41.74 Aligned_cols=30 Identities=27% Similarity=0.254 Sum_probs=27.3
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+|.|+|+|++|+..|+.|.+.|..|+ |.|.
T Consensus 2 ~Ig~IGlG~mG~~mA~~L~~~g~~v~-v~dr 31 (299)
T PRK12490 2 KLGLIGLGKMGGNMAERLREDGHEVV-GYDV 31 (299)
T ss_pred EEEEEcccHHHHHHHHHHHhCCCEEE-EEEC
Confidence 79999999999999999999999886 6776
No 387
>cd08242 MDR_like Medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family. This group contains members identified as related to zinc-dependent alcohol dehydrogenase and other members of the MDR family, including threonine dehydrogenase. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catalytic domain with distant homology to GroES. The MDR group includes various activities, including the founding alcohol dehydrogenase (ADH), quinone reducta
Probab=75.96 E-value=4.6 Score=40.14 Aligned_cols=34 Identities=26% Similarity=0.335 Sum_probs=30.4
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
..|.+|.|.|.|.||+.+++.+..+|++|++++.
T Consensus 154 ~~g~~vlV~g~g~vg~~~~q~a~~~G~~vi~~~~ 187 (319)
T cd08242 154 TPGDKVAVLGDGKLGLLIAQVLALTGPDVVLVGR 187 (319)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCeEEEEcC
Confidence 4688999999999999999999999999887764
No 388
>PRK07889 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.95 E-value=4.5 Score=39.57 Aligned_cols=33 Identities=36% Similarity=0.397 Sum_probs=29.0
Q ss_pred CCCCcEEEEecc---cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf---GNVG~~aAe~L~e~GakVVaV 445 (512)
.++|++++|.|. +-+|..+|+.|++.|++|+.+
T Consensus 4 ~~~~k~~lItGa~~s~GIG~a~a~~la~~G~~v~l~ 39 (256)
T PRK07889 4 LLEGKRILVTGVITDSSIAFHVARVAQEQGAEVVLT 39 (256)
T ss_pred cccCCEEEEeCCCCcchHHHHHHHHHHHCCCEEEEe
Confidence 378999999995 789999999999999998743
No 389
>PRK04207 glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=75.83 E-value=3.9 Score=43.01 Aligned_cols=33 Identities=27% Similarity=0.339 Sum_probs=29.2
Q ss_pred cEEEEecccHHHHHHHHHHHH-CCCEEEEEeCCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDAK 449 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e-~GakVVaVSDs~ 449 (512)
.||+|.|||.+|+.+++.+.+ .+..+++|+|++
T Consensus 2 ikVaI~G~GrIGr~va~al~~~~d~eLvav~d~~ 35 (341)
T PRK04207 2 IKVGVNGYGTIGKRVADAVAAQPDMELVGVAKTK 35 (341)
T ss_pred eEEEEECCCHHHHHHHHHHhcCCCcEEEEEECCC
Confidence 489999999999999998875 589999999963
No 390
>PRK07984 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.80 E-value=4.5 Score=40.09 Aligned_cols=34 Identities=26% Similarity=0.326 Sum_probs=29.4
Q ss_pred CCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|++++|.|.+ .+|..+|+.|++.|++|+ +.+.
T Consensus 4 l~~k~~lITGas~~~GIG~aia~~la~~G~~vi-l~~r 40 (262)
T PRK07984 4 LSGKRILVTGVASKLSIAYGIAQAMHREGAELA-FTYQ 40 (262)
T ss_pred cCCCEEEEeCCCCCccHHHHHHHHHHHCCCEEE-EEec
Confidence 789999999986 599999999999999987 4443
No 391
>PRK06035 3-hydroxyacyl-CoA dehydrogenase; Validated
Probab=75.75 E-value=4 Score=41.23 Aligned_cols=31 Identities=19% Similarity=0.158 Sum_probs=27.7
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|++|...|..|+..|..|+ +.|.
T Consensus 4 ~~I~ViGaG~mG~~iA~~la~~G~~V~-l~d~ 34 (291)
T PRK06035 4 KVIGVVGSGVMGQGIAQVFARTGYDVT-IVDV 34 (291)
T ss_pred cEEEEECccHHHHHHHHHHHhcCCeEE-EEeC
Confidence 579999999999999999999999876 5565
No 392
>TIGR01915 npdG NADPH-dependent F420 reductase. This model represents a subset of a parent family described by Pfam model pfam03807. Unlike the parent family, members of this family are found only in species with evidence of coenzyme F420. All members of this family are believed to act as NADPH-dependent F420 reductase.
Probab=75.69 E-value=4.4 Score=39.36 Aligned_cols=31 Identities=16% Similarity=0.281 Sum_probs=26.6
Q ss_pred cEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|.|.| .|++|..++..|.+.|..|+ +.+.
T Consensus 1 MkI~IIGG~G~mG~ala~~L~~~G~~V~-v~~r 32 (219)
T TIGR01915 1 MKIAVLGGTGDQGKGLALRLAKAGNKII-IGSR 32 (219)
T ss_pred CEEEEEcCCCHHHHHHHHHHHhCCCEEE-EEEc
Confidence 4799997 99999999999999998886 4454
No 393
>PLN02253 xanthoxin dehydrogenase
Probab=75.60 E-value=4.9 Score=39.34 Aligned_cols=33 Identities=24% Similarity=0.266 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.++|++++|.|. |.+|+++|+.|.+.|++|+.+
T Consensus 15 ~l~~k~~lItGas~gIG~~la~~l~~~G~~v~~~ 48 (280)
T PLN02253 15 RLLGKVALVTGGATGIGESIVRLFHKHGAKVCIV 48 (280)
T ss_pred ccCCCEEEEECCCchHHHHHHHHHHHcCCEEEEE
Confidence 578999999985 899999999999999999855
No 394
>PRK10309 galactitol-1-phosphate dehydrogenase; Provisional
Probab=75.60 E-value=4.5 Score=41.07 Aligned_cols=34 Identities=26% Similarity=0.491 Sum_probs=28.6
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
..|.+|+|.|.|.||..+++.+...|+++|.+.|
T Consensus 159 ~~g~~vlV~G~g~vG~~~~~~a~~~G~~~v~~~~ 192 (347)
T PRK10309 159 CEGKNVIIIGAGTIGLLAIQCAVALGAKSVTAID 192 (347)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEC
Confidence 4589999999999999999999999998543443
No 395
>PRK08277 D-mannonate oxidoreductase; Provisional
Probab=75.58 E-value=4.9 Score=39.30 Aligned_cols=34 Identities=26% Similarity=0.339 Sum_probs=29.9
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.++++++++|.|. |.+|+.+|+.|.+.|++|+.+
T Consensus 6 ~~~~~k~vlVtGas~giG~~ia~~l~~~G~~V~~~ 40 (278)
T PRK08277 6 FSLKGKVAVITGGGGVLGGAMAKELARAGAKVAIL 40 (278)
T ss_pred eccCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEE
Confidence 3678999999996 899999999999999998744
No 396
>PRK12744 short chain dehydrogenase; Provisional
Probab=75.53 E-value=4.9 Score=38.81 Aligned_cols=34 Identities=26% Similarity=0.418 Sum_probs=29.6
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++++|.| .|.+|.++|+.|.+.|++|+.+.
T Consensus 5 ~l~~k~vlItGa~~gIG~~~a~~l~~~G~~vv~i~ 39 (257)
T PRK12744 5 SLKGKVVLIAGGAKNLGGLIARDLAAQGAKAVAIH 39 (257)
T ss_pred CCCCcEEEEECCCchHHHHHHHHHHHCCCcEEEEe
Confidence 57789999988 58999999999999999977664
No 397
>PRK08278 short chain dehydrogenase; Provisional
Probab=75.48 E-value=5.2 Score=39.45 Aligned_cols=34 Identities=21% Similarity=0.263 Sum_probs=29.9
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++++++++|.|. |-+|+.+|+.|.+.|++|+.++
T Consensus 3 ~~~~k~vlItGas~gIG~~ia~~l~~~G~~V~~~~ 37 (273)
T PRK08278 3 SLSGKTLFITGASRGIGLAIALRAARDGANIVIAA 37 (273)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEEe
Confidence 468899999995 8899999999999999998654
No 398
>TIGR02825 B4_12hDH leukotriene B4 12-hydroxydehydrogenase/15-oxo-prostaglandin 13-reductase. Leukotriene B4 12-hydroxydehydrogenase is an NADP-dependent enzyme of arachidonic acid metabolism, responsible for converting leukotriene B4 to the much less active metabolite 12-oxo-leukotriene B4. The BRENDA database lists leukotriene B4 12-hydroxydehydrogenase as one of the synonyms of 2-alkenal reductase (EC 1.3.1.74), while 1.3.1.48 is 15-oxoprostaglandin 13-reductase.
Probab=75.48 E-value=8.9 Score=38.48 Aligned_cols=35 Identities=17% Similarity=0.152 Sum_probs=30.4
Q ss_pred CCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.|.+|.|.| .|.||+.+++.+...|++|++++.+
T Consensus 137 ~~g~~VLI~ga~g~vG~~aiqlAk~~G~~Vi~~~~s 172 (325)
T TIGR02825 137 KGGETVMVNAAAGAVGSVVGQIAKLKGCKVVGAAGS 172 (325)
T ss_pred CCCCEEEEeCCccHHHHHHHHHHHHcCCEEEEEeCC
Confidence 3689999999 5999999999999999999877654
No 399
>PRK12810 gltD glutamate synthase subunit beta; Reviewed
Probab=75.34 E-value=3.8 Score=44.34 Aligned_cols=33 Identities=24% Similarity=0.349 Sum_probs=29.5
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++|+|+|.|..|..+|..|.+.|.+|+ |.|.
T Consensus 142 ~~~~VvIIGaGpAGl~aA~~l~~~G~~V~-vie~ 174 (471)
T PRK12810 142 TGKKVAVVGSGPAGLAAADQLARAGHKVT-VFER 174 (471)
T ss_pred CCCEEEEECcCHHHHHHHHHHHhCCCcEE-EEec
Confidence 57899999999999999999999999976 5554
No 400
>PLN02545 3-hydroxybutyryl-CoA dehydrogenase
Probab=75.33 E-value=4.3 Score=41.05 Aligned_cols=31 Identities=19% Similarity=0.202 Sum_probs=27.7
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|++|...|..|+..|..|+ +.|.
T Consensus 5 ~~V~vIG~G~mG~~iA~~l~~~G~~V~-~~d~ 35 (295)
T PLN02545 5 KKVGVVGAGQMGSGIAQLAAAAGMDVW-LLDS 35 (295)
T ss_pred CEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence 579999999999999999999999886 5565
No 401
>TIGR01381 E1_like_apg7 E1-like protein-activating enzyme Gsa7p/Apg7p. This model represents a family of eukaryotic proteins found in animals, plants, and yeasts, including Apg7p (YHR171W) from Saccharomyces cerevisiae and GSA7 from Pichia pastoris. Members are about 650 to 700 residues in length and include a central domain of about 150 residues shared with the ThiF/MoeB/HesA family of proteins. A low level of similarity to ubiquitin-activating enzyme E1 is described in a paper on peroxisome autophagy mediated by GSA7, and is the basis of the name ubiquitin activating enzyme E1-like protein. Members of the family appear to be involved in protein lipidation events analogous to ubiquitination and required for membrane fusion events during autophagy.
Probab=75.31 E-value=3.3 Score=47.55 Aligned_cols=37 Identities=22% Similarity=0.436 Sum_probs=33.8
Q ss_pred CCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 413 ELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 413 ~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|+..+|.|.|.|-+|..+|+.|+..|.+=+++.|.+
T Consensus 335 kL~~~kVLIvGaGGLGs~VA~~La~~GVg~ItlVD~D 371 (664)
T TIGR01381 335 RYSQLKVLLLGAGTLGCNVARCLIGWGVRHITFVDNG 371 (664)
T ss_pred HHhcCeEEEECCcHHHHHHHHHHHHcCCCeEEEEcCC
Confidence 5779999999999999999999999998888888864
No 402
>PRK08415 enoyl-(acyl carrier protein) reductase; Provisional
Probab=75.30 E-value=4.5 Score=40.35 Aligned_cols=35 Identities=20% Similarity=0.246 Sum_probs=29.5
Q ss_pred CCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaVSDs 448 (512)
.++||+++|.|.+ -+|+.+|+.|++.|++|+ +++.
T Consensus 2 ~l~~k~~lItGas~~~GIG~aiA~~la~~G~~Vi-l~~r 39 (274)
T PRK08415 2 IMKGKKGLIVGVANNKSIAYGIAKACFEQGAELA-FTYL 39 (274)
T ss_pred ccCCcEEEEECCCCCCCHHHHHHHHHHHCCCEEE-EEec
Confidence 3678999999974 699999999999999987 4444
No 403
>PRK14851 hypothetical protein; Provisional
Probab=75.28 E-value=3.3 Score=47.74 Aligned_cols=36 Identities=17% Similarity=0.251 Sum_probs=31.9
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|++++|+|.|.|-||..+|+.|+..|..-+.|.|-+
T Consensus 41 L~~~~VlIvG~GGlGs~va~~Lar~GVG~l~LvD~D 76 (679)
T PRK14851 41 LAEAKVAIPGMGGVGGVHLITMVRTGIGRFHIADFD 76 (679)
T ss_pred HhcCeEEEECcCHHHHHHHHHHHHhCCCeEEEEcCC
Confidence 678999999999999999999999998666777754
No 404
>PRK07370 enoyl-(acyl carrier protein) reductase; Validated
Probab=75.27 E-value=4.4 Score=39.67 Aligned_cols=33 Identities=30% Similarity=0.356 Sum_probs=28.8
Q ss_pred CCCCcEEEEecc---cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS---GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf---GNVG~~aAe~L~e~GakVVaV 445 (512)
+++|++++|.|. +-+|..+|+.|++.|++|+.+
T Consensus 3 ~l~~k~~lItGas~~~GIG~aia~~la~~G~~v~~~ 38 (258)
T PRK07370 3 DLTGKKALVTGIANNRSIAWGIAQQLHAAGAELGIT 38 (258)
T ss_pred ccCCcEEEEeCCCCCCchHHHHHHHHHHCCCEEEEE
Confidence 478999999997 479999999999999998643
No 405
>COG0686 Ald Alanine dehydrogenase [Amino acid transport and metabolism]
Probab=75.19 E-value=5.2 Score=42.65 Aligned_cols=34 Identities=24% Similarity=0.292 Sum_probs=30.3
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
....+|+|.|.|-||.++|+...-+||+|. |-|.
T Consensus 166 V~~~kv~iiGGGvvgtnaAkiA~glgA~Vt-ild~ 199 (371)
T COG0686 166 VLPAKVVVLGGGVVGTNAAKIAIGLGADVT-ILDL 199 (371)
T ss_pred CCCccEEEECCccccchHHHHHhccCCeeE-EEec
Confidence 456789999999999999999999999985 8776
No 406
>PRK07067 sorbitol dehydrogenase; Provisional
Probab=75.17 E-value=4.9 Score=38.74 Aligned_cols=33 Identities=30% Similarity=0.407 Sum_probs=29.2
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.+++++++|.|. |-+|.++|+.|++.|++|+.+
T Consensus 3 ~l~~~~vlItGas~~iG~~ia~~l~~~G~~v~~~ 36 (257)
T PRK07067 3 RLQGKVALLTGAASGIGEAVAERYLAEGARVVIA 36 (257)
T ss_pred CCCCCEEEEeCCCchHHHHHHHHHHHcCCEEEEE
Confidence 367899999985 999999999999999998854
No 407
>PF01494 FAD_binding_3: FAD binding domain; InterPro: IPR002938 Monooxygenases incorporate one hydroxyl group into substrates and are found in many metabolic pathways. In this reaction, two atoms of dioxygen are reduced to one hydroxyl group and one H2O molecule by the concomitant oxidation of NAD(P)H []. P-hydroxybenzoate hydroxylase from Pseudomonas fluorescens contains this sequence motif (present in in flavoprotein hydroxylases) with a putative dual function in FAD and NADPH binding [].; PDB: 2Y6R_B 2XYO_C 2Y6Q_C 3P9U_D 2XDO_C 1FOH_D 1PN0_A 3IHG_C 2QA2_A 2VOU_C ....
Probab=75.10 E-value=4.2 Score=40.13 Aligned_cols=32 Identities=13% Similarity=0.190 Sum_probs=26.6
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCCCc
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKG 450 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G 450 (512)
.|+|+|.|-+|..+|..|++.|.+|+ |-|.+.
T Consensus 3 dV~IvGaG~aGl~~A~~L~~~G~~v~-i~E~~~ 34 (356)
T PF01494_consen 3 DVAIVGAGPAGLAAALALARAGIDVT-IIERRP 34 (356)
T ss_dssp EEEEE--SHHHHHHHHHHHHTTCEEE-EEESSS
T ss_pred eEEEECCCHHHHHHHHHHHhcccccc-cchhcc
Confidence 69999999999999999999999975 877643
No 408
>PRK12809 putative oxidoreductase Fe-S binding subunit; Reviewed
Probab=75.08 E-value=3.9 Score=46.29 Aligned_cols=34 Identities=21% Similarity=0.244 Sum_probs=30.2
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.|++|+|+|.|..|..+|..|.+.|++|+ |.|..
T Consensus 309 ~~kkVaIIG~GpaGl~aA~~L~~~G~~Vt-v~e~~ 342 (639)
T PRK12809 309 RSEKVAVIGAGPAGLGCADILARAGVQVD-VFDRH 342 (639)
T ss_pred CCCEEEEECcCHHHHHHHHHHHHcCCcEE-EEeCC
Confidence 58999999999999999999999999975 66643
No 409
>PRK06249 2-dehydropantoate 2-reductase; Provisional
Probab=75.04 E-value=3.5 Score=42.14 Aligned_cols=33 Identities=18% Similarity=0.017 Sum_probs=28.4
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
.-++|+|.|.|.||...|-.|++.|..|+-++-
T Consensus 4 ~~m~I~IiG~GaiG~~lA~~L~~~g~~V~~~~r 36 (313)
T PRK06249 4 ETPRIGIIGTGAIGGFYGAMLARAGFDVHFLLR 36 (313)
T ss_pred cCcEEEEECCCHHHHHHHHHHHHCCCeEEEEEe
Confidence 347899999999999999999999998875543
No 410
>PRK12831 putative oxidoreductase; Provisional
Probab=74.92 E-value=4.2 Score=44.18 Aligned_cols=34 Identities=26% Similarity=0.318 Sum_probs=30.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.+++|+|+|.|..|..+|..|.+.|.+|+ |.|.
T Consensus 138 ~~~~~V~IIG~GpAGl~aA~~l~~~G~~V~-v~e~ 171 (464)
T PRK12831 138 KKGKKVAVIGSGPAGLTCAGDLAKMGYDVT-IFEA 171 (464)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHhCCCeEE-EEec
Confidence 368999999999999999999999999986 6664
No 411
>PRK06567 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Validated
Probab=74.86 E-value=3.8 Score=49.21 Aligned_cols=34 Identities=18% Similarity=0.194 Sum_probs=30.7
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|++|+|+|.|..|..+|..|++.|.+|+ |-|.
T Consensus 381 ~tgKKVaVVGaGPAGLsAA~~La~~Gh~Vt-v~E~ 414 (1028)
T PRK06567 381 PTNYNILVTGLGPAGFSLSYYLLRSGHNVT-AIDG 414 (1028)
T ss_pred CCCCeEEEECcCHHHHHHHHHHHhCCCeEE-EEcc
Confidence 478999999999999999999999999987 5554
No 412
>PRK12359 flavodoxin FldB; Provisional
Probab=74.80 E-value=6.5 Score=37.78 Aligned_cols=43 Identities=23% Similarity=0.278 Sum_probs=34.4
Q ss_pred CCCCCcEEEEecccHH-HH---------HHHHHHHHCCCEEEEEeCCCceeeC
Q 010384 412 KELKGLRCVVSGSGKI-AM---------HVLEKLIAYGAIPVSVSDAKGYLVD 454 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNV-G~---------~aAe~L~e~GakVVaVSDs~G~Iyd 454 (512)
.+|+||+|++-|+|+- |+ .+.+.|.+.|+++|+-...+|+-|+
T Consensus 75 ~dl~gK~vAlFG~Gd~~~y~~~f~~a~~~l~~~l~~~Ga~ivG~~~~~gY~f~ 127 (172)
T PRK12359 75 LNLEGKIVALYGMGDQLGYGEWFLDALGMLHDKLAPKGVKFVGYWPTEGYEFT 127 (172)
T ss_pred CCCCCCEEEEEeCCCCccchHHHHHHHHHHHHHHHhCCCeEEeeEeCCCcccc
Confidence 4799999999999985 32 3666777799999998888877654
No 413
>PRK07417 arogenate dehydrogenase; Reviewed
Probab=74.72 E-value=4.5 Score=40.79 Aligned_cols=31 Identities=16% Similarity=0.096 Sum_probs=26.8
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|.|.|.|++|..+|..|.+.|..|+ +.|.
T Consensus 1 m~I~IIG~G~mG~sla~~L~~~g~~V~-~~d~ 31 (279)
T PRK07417 1 MKIGIVGLGLIGGSLGLDLRSLGHTVY-GVSR 31 (279)
T ss_pred CeEEEEeecHHHHHHHHHHHHCCCEEE-EEEC
Confidence 379999999999999999999999876 4454
No 414
>PF00411 Ribosomal_S11: Ribosomal protein S11; InterPro: IPR001971 Ribosomes are the particles that catalyse mRNA-directed protein synthesis in all organisms. The codons of the mRNA are exposed on the ribosome to allow tRNA binding. This leads to the incorporation of amino acids into the growing polypeptide chain in accordance with the genetic information. Incoming amino acid monomers enter the ribosomal A site in the form of aminoacyl-tRNAs complexed with elongation factor Tu (EF-Tu) and GTP. The growing polypeptide chain, situated in the P site as peptidyl-tRNA, is then transferred to aminoacyl-tRNA and the new peptidyl-tRNA, extended by one residue, is translocated to the P site with the aid the elongation factor G (EF-G) and GTP as the deacylated tRNA is released from the ribosome through one or more exit sites [, ]. About 2/3 of the mass of the ribosome consists of RNA and 1/3 of protein. The proteins are named in accordance with the subunit of the ribosome which they belong to - the small (S1 to S31) and the large (L1 to L44). Usually they decorate the rRNA cores of the subunits. Many ribosomal proteins, particularly those of the large subunit, are composed of a globular, surfaced-exposed domain with long finger-like projections that extend into the rRNA core to stabilise its structure. Most of the proteins interact with multiple RNA elements, often from different domains. In the large subunit, about 1/3 of the 23S rRNA nucleotides are at least in van der Waal's contact with protein, and L22 interacts with all six domains of the 23S rRNA. Proteins S4 and S7, which initiate assembly of the 16S rRNA, are located at junctions of five and four RNA helices, respectively. In this way proteins serve to organise and stabilise the rRNA tertiary structure. While the crucial activities of decoding and peptide transfer are RNA based, proteins play an active role in functions that may have evolved to streamline the process of protein synthesis. In addition to their function in the ribosome, many ribosomal proteins have some function 'outside' the ribosome [, ]. Ribosomal protein S11 [] plays an essential role in selecting the correct tRNA in protein biosynthesis. It is located on the large lobe of the small ribosomal subunit. On the basis of sequence similarities, S11 belongs to a family of bacterial, archaeal and eukaryotic ribosomal proteins [].; GO: 0003735 structural constituent of ribosome, 0006412 translation, 0005622 intracellular, 0005840 ribosome; PDB: 2YKR_K 3U5C_O 3O2Z_H 3IZB_K 3U5G_O 3O30_H 1S1H_K 3BBN_K 2XZN_K 2XZM_K ....
Probab=74.67 E-value=9.6 Score=34.03 Aligned_cols=65 Identities=22% Similarity=0.164 Sum_probs=51.1
Q ss_pred CCCCCchhHHHHHHHHHHHHc-CCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCceeeC
Q 010384 390 LRTEATGYGLVFFAQLILADM-NKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGYLVD 454 (512)
Q Consensus 390 gR~eATG~GV~~~i~eal~~l-g~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~Iyd 454 (512)
+....|-|....+++.+++.. ...++...|.|-|+|.--..+.+.|...|.+|+.|.|.+..=||
T Consensus 36 ~~rk~t~~Aa~~~a~~~~~~~~~~gi~~v~v~ikG~g~gr~~~lk~l~~~gl~I~~I~D~T~iphn 101 (110)
T PF00411_consen 36 GARKSTPYAAQQAAEKIAKKAKELGIKTVRVKIKGFGPGREAALKALKKSGLKIVSITDVTPIPHN 101 (110)
T ss_dssp TTCGSSHHHHHHHHHHHHHHHHCTTEEEEEEEEESSSTTHHHHHHHHHHTTSEEEEEEEETT--SS
T ss_pred cccccCHHHHHHHHHHHHHHHHHcCCeEEEEEEcCCCccHHHHHHHHHhcCCEEEEEEeecCCCCC
Confidence 445678888877777777654 45677888999999998889999999999999999998654443
No 415
>PRK06200 2,3-dihydroxy-2,3-dihydrophenylpropionate dehydrogenase; Provisional
Probab=74.64 E-value=5.3 Score=38.71 Aligned_cols=33 Identities=24% Similarity=0.436 Sum_probs=29.0
Q ss_pred CCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 414 LKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
++|++++|.|. |.+|+.+|+.|++.|++|+.++
T Consensus 4 ~~~k~vlVtGas~gIG~~ia~~l~~~G~~V~~~~ 37 (263)
T PRK06200 4 LHGQVALITGGGSGIGRALVERFLAEGARVAVLE 37 (263)
T ss_pred CCCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 67899999986 7899999999999999987553
No 416
>COG0100 RpsK Ribosomal protein S11 [Translation, ribosomal structure and biogenesis]
Probab=74.62 E-value=12 Score=34.93 Aligned_cols=72 Identities=22% Similarity=0.303 Sum_probs=54.7
Q ss_pred cCCccccc---CCCC--CCCCCchhHHHHHHHHHHHH-cCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 378 FTGPRIFW---SGSS--LRTEATGYGLVFFAQLILAD-MNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 378 vTGKpl~~---GGs~--gR~eATG~GV~~~i~eal~~-lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
.+|+-+.| ||.. +..+.|-|-...+++.+.+. +...++..-|.|.|+|.-...+.+.|...|.+|.-|.|..
T Consensus 37 ~~Gn~i~wassG~~gfk~~rk~tpyAA~~aa~~aa~~a~e~Gi~~v~v~vkgpG~GreaAiraL~~ag~~i~~I~DvT 114 (129)
T COG0100 37 LTGNVIIWASSGGMGFKGSRKSTPYAAQLAAEDAAKKAKEHGIKSVEVKVKGPGPGREAAIRALAAAGLKITRIEDVT 114 (129)
T ss_pred CCCCEEEEEecCCceEcCCCCCCHHHHHHHHHHHHHHHHHhCccEEEEEEECCCCcHHHHHHHHHHccceEEEEEEcC
Confidence 46665544 3332 33378888777777766643 3467888899999999999999999999999999999973
No 417
>PRK09620 hypothetical protein; Provisional
Probab=74.58 E-value=5.5 Score=39.78 Aligned_cols=34 Identities=26% Similarity=0.484 Sum_probs=28.9
Q ss_pred CCCcEEEEecc-----------------cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 414 LKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGf-----------------GNVG~~aAe~L~e~GakVVaVSD 447 (512)
|+|++|.|.+- |-+|+++|+.|.+.|+.|+.|+.
T Consensus 1 l~gk~vlITaG~T~E~iD~VR~itN~SSGfiGs~LA~~L~~~Ga~V~li~g 51 (229)
T PRK09620 1 MKGKKVLITSGGCLEKWDQVRGHTNMAKGTIGRIIAEELISKGAHVIYLHG 51 (229)
T ss_pred CCCCEEEEeCCCccCCcCCeeEecCCCcCHHHHHHHHHHHHCCCeEEEEeC
Confidence 46888888743 89999999999999999997764
No 418
>PF00106 adh_short: short chain dehydrogenase alcohol dehydrogenase superfamily signature glucose/ribitol dehydrogenase family signature; InterPro: IPR002198 The short-chain dehydrogenases/reductases family (SDR) [] is a very large family of enzymes, most of which are known to be NAD- or NADP-dependent oxidoreductases. As the first member of this family to be characterised was Drosophila alcohol dehydrogenase, this family used to be called [, , ] 'insect-type', or 'short-chain' alcohol dehydrogenases. Most member of this family are proteins of about 250 to 300 amino acid residues. Most dehydrogenases possess at least 2 domains [], the first binding the coenzyme, often NAD, and the second binding the substrate. This latter domain determines the substrate specificity and contains amino acids involved in catalysis. Little sequence similarity has been found in the coenzyme binding domain although there is a large degree of structural similarity, and it has therefore been suggested that the structure of dehydrogenases has arisen through gene fusion of a common ancestral coenzyme nucleotide sequence with various substrate specific domains [].; GO: 0016491 oxidoreductase activity, 0008152 metabolic process; PDB: 3QWI_D 3QWF_G 3IS3_A 3QWH_C 3ITD_A 3L77_A 1HDC_C 2HSD_C 3KVO_A 3KZV_A ....
Probab=74.57 E-value=5.5 Score=35.49 Aligned_cols=32 Identities=22% Similarity=0.264 Sum_probs=26.3
Q ss_pred cEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
|+|+|.| .+.+|..+|+.|++.|+++|.+...
T Consensus 1 k~~lItGa~~giG~~~a~~l~~~g~~~v~~~~r 33 (167)
T PF00106_consen 1 KTVLITGASSGIGRALARALARRGARVVILTSR 33 (167)
T ss_dssp EEEEEETTTSHHHHHHHHHHHHTTTEEEEEEES
T ss_pred CEEEEECCCCHHHHHHHHHHHhcCceEEEEeee
Confidence 6788888 6999999999999998866655555
No 419
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=74.53 E-value=4.6 Score=43.56 Aligned_cols=34 Identities=24% Similarity=0.231 Sum_probs=29.5
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|++|+|.|.|++|.-+|..|.+.|++|. +...
T Consensus 270 ~~gk~VvVIGgG~~a~d~A~~l~~~G~~Vt-lv~~ 303 (449)
T TIGR01316 270 YAGKSVVVIGGGNTAVDSARTALRLGAEVH-CLYR 303 (449)
T ss_pred cCCCeEEEECCCHHHHHHHHHHHHcCCEEE-EEee
Confidence 468999999999999999999999999954 5443
No 420
>PRK12921 2-dehydropantoate 2-reductase; Provisional
Probab=74.53 E-value=4.1 Score=40.75 Aligned_cols=29 Identities=21% Similarity=0.280 Sum_probs=25.7
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEE
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaV 445 (512)
++|+|.|.|+||..+|..|++.|..|+.+
T Consensus 1 mkI~IiG~G~iG~~~a~~L~~~g~~V~~~ 29 (305)
T PRK12921 1 MRIAVVGAGAVGGTFGGRLLEAGRDVTFL 29 (305)
T ss_pred CeEEEECCCHHHHHHHHHHHHCCCceEEE
Confidence 47999999999999999999999887644
No 421
>PRK12831 putative oxidoreductase; Provisional
Probab=74.52 E-value=4.2 Score=44.16 Aligned_cols=34 Identities=24% Similarity=0.334 Sum_probs=29.8
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|++|+|.|.||+|.-+|..|.+.|++| ++...
T Consensus 279 ~~gk~VvVIGgG~va~d~A~~l~r~Ga~V-tlv~r 312 (464)
T PRK12831 279 KVGKKVAVVGGGNVAMDAARTALRLGAEV-HIVYR 312 (464)
T ss_pred cCCCeEEEECCcHHHHHHHHHHHHcCCEE-EEEee
Confidence 57899999999999999999999999995 45544
No 422
>PLN02237 glyceraldehyde-3-phosphate dehydrogenase B
Probab=74.48 E-value=7.2 Score=42.96 Aligned_cols=51 Identities=22% Similarity=0.186 Sum_probs=40.1
Q ss_pred cEEEEecccHHHHHHHHHHHHC---CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY---GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~---GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|=|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-..+|.+
T Consensus 76 ikVgINGFGRIGR~vlR~~~~~~~~~ievVaINd~---------~~~~~~ayLlkyDS~hG~f 129 (442)
T PLN02237 76 LKVAINGFGRIGRNFLRCWHGRKDSPLDVVVVNDS---------GGVKNASHLLKYDSMLGTF 129 (442)
T ss_pred EEEEEECCChHHHHHHHHHHHccCCCeEEEEECCC---------CCHHHHHHHHccccCCCCc
Confidence 7899999999999999987743 5899999885 3666776777776656644
No 423
>PRK10669 putative cation:proton antiport protein; Provisional
Probab=74.44 E-value=4.6 Score=44.81 Aligned_cols=31 Identities=29% Similarity=0.382 Sum_probs=27.2
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.++|.|+|++|+.+|+.|.+.|..++ +-|.
T Consensus 418 ~hiiI~G~G~~G~~la~~L~~~g~~vv-vId~ 448 (558)
T PRK10669 418 NHALLVGYGRVGSLLGEKLLAAGIPLV-VIET 448 (558)
T ss_pred CCEEEECCChHHHHHHHHHHHCCCCEE-EEEC
Confidence 468999999999999999999999887 5555
No 424
>TIGR01505 tartro_sem_red 2-hydroxy-3-oxopropionate reductase. This model represents 2-hydroxy-3-oxopropionate reductase (EC 1.1.1.60), also called tartronate semialdehyde reductase. It follows glyoxylate carboligase and precedes glycerate kinase in D-glycerate pathway of glyoxylate degradation. The eventual product, 3-phosphoglycerate, is an intermediate of glycolysis and is readily metabolized. Tartronic semialdehyde, the substrate of this enzyme, may also come from other pathways, such as D-glucarate catabolism.
Probab=74.43 E-value=4 Score=41.12 Aligned_cols=30 Identities=17% Similarity=0.088 Sum_probs=26.5
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+|.|.|+|++|...|..|.+.|..|+ +.|.
T Consensus 1 ~IgvIG~G~mG~~iA~~l~~~G~~V~-~~dr 30 (291)
T TIGR01505 1 KVGFIGLGIMGSPMSINLAKAGYQLH-VTTI 30 (291)
T ss_pred CEEEEEecHHHHHHHHHHHHCCCeEE-EEcC
Confidence 48899999999999999999999886 5565
No 425
>PLN02172 flavin-containing monooxygenase FMO GS-OX
Probab=74.36 E-value=4.1 Score=44.49 Aligned_cols=34 Identities=21% Similarity=0.270 Sum_probs=29.6
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
...++|+|+|.|..|..+|+.|.+.|.+|+ |-+.
T Consensus 8 ~~~~~VaIIGAG~aGL~aA~~l~~~G~~v~-vfE~ 41 (461)
T PLN02172 8 INSQHVAVIGAGAAGLVAARELRREGHTVV-VFER 41 (461)
T ss_pred CCCCCEEEECCcHHHHHHHHHHHhcCCeEE-EEec
Confidence 346899999999999999999999999887 6664
No 426
>PLN02712 arogenate dehydrogenase
Probab=74.18 E-value=4.7 Score=46.31 Aligned_cols=33 Identities=21% Similarity=0.320 Sum_probs=28.7
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
+.++|+|+|+|++|+.+|+.|.+.|.+|++++.
T Consensus 51 ~~~kIgIIG~G~mG~slA~~L~~~G~~V~~~dr 83 (667)
T PLN02712 51 TQLKIAIIGFGNYGQFLAKTLISQGHTVLAHSR 83 (667)
T ss_pred CCCEEEEEccCHHHHHHHHHHHHCCCEEEEEeC
Confidence 457899999999999999999999998876543
No 427
>PRK12935 acetoacetyl-CoA reductase; Provisional
Probab=74.16 E-value=6.7 Score=37.39 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.1
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
+++++++.|.| .|-+|+++|+.|++.|++|+.+..
T Consensus 3 ~~~~~~~lItG~s~~iG~~la~~l~~~g~~v~~~~~ 38 (247)
T PRK12935 3 QLNGKVAIVTGGAKGIGKAITVALAQEGAKVVINYN 38 (247)
T ss_pred CCCCCEEEEECCCCHHHHHHHHHHHHcCCEEEEEcC
Confidence 36789999998 699999999999999999985543
No 428
>PLN02686 cinnamoyl-CoA reductase
Probab=74.12 E-value=5.6 Score=41.54 Aligned_cols=38 Identities=13% Similarity=0.254 Sum_probs=32.8
Q ss_pred CCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 411 NKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 411 g~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+.++++|.|-|. |-+|+++++.|++.|++|+++++.
T Consensus 48 ~~~~~~k~VLVTGatGfIG~~lv~~L~~~G~~V~~~~r~ 86 (367)
T PLN02686 48 GADAEARLVCVTGGVSFLGLAIVDRLLRHGYSVRIAVDT 86 (367)
T ss_pred ccCCCCCEEEEECCchHHHHHHHHHHHHCCCEEEEEeCC
Confidence 35677899999996 999999999999999999876653
No 429
>PRK03803 murD UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase; Provisional
Probab=74.11 E-value=4.2 Score=43.53 Aligned_cols=33 Identities=27% Similarity=0.281 Sum_probs=29.3
Q ss_pred CcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+-+|+|.|.|..|..+|++|.+.|++|+ +||.+
T Consensus 6 ~~~~~v~G~G~sG~s~a~~L~~~G~~v~-~~D~~ 38 (448)
T PRK03803 6 DGLHIVVGLGKTGLSVVRFLARQGIPFA-VMDSR 38 (448)
T ss_pred CCeEEEEeecHhHHHHHHHHHhCCCeEE-EEeCC
Confidence 4589999999999999999999999875 89964
No 430
>PRK08862 short chain dehydrogenase; Provisional
Probab=74.09 E-value=5.4 Score=38.68 Aligned_cols=34 Identities=9% Similarity=0.180 Sum_probs=29.3
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++|++++|.|. +.+|..+|+.|.+.|++|+.++
T Consensus 2 ~~~~k~~lVtGas~GIG~aia~~la~~G~~V~~~~ 36 (227)
T PRK08862 2 DIKSSIILITSAGSVLGRTISCHFARLGATLILCD 36 (227)
T ss_pred CCCCeEEEEECCccHHHHHHHHHHHHCCCEEEEEc
Confidence 578999999996 5599999999999999987653
No 431
>PRK12779 putative bifunctional glutamate synthase subunit beta/2-polyprenylphenol hydroxylase; Provisional
Probab=73.94 E-value=3.9 Score=48.69 Aligned_cols=34 Identities=24% Similarity=0.064 Sum_probs=30.7
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|++|+|+|.|..|..+|..|.+.|.+|+ |-|.
T Consensus 304 ~~gkkVaVIGsGPAGLsaA~~Lar~G~~Vt-VfE~ 337 (944)
T PRK12779 304 AVKPPIAVVGSGPSGLINAYLLAVEGFPVT-VFEA 337 (944)
T ss_pred CCCCeEEEECCCHHHHHHHHHHHHCCCeEE-EEee
Confidence 469999999999999999999999999986 6665
No 432
>PRK05808 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.88 E-value=4.4 Score=40.68 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.6
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|.+|...|..|+..|..|+ +.|.
T Consensus 4 ~kI~VIG~G~mG~~ia~~la~~g~~V~-~~d~ 34 (282)
T PRK05808 4 QKIGVIGAGTMGNGIAQVCAVAGYDVV-MVDI 34 (282)
T ss_pred cEEEEEccCHHHHHHHHHHHHCCCceE-EEeC
Confidence 479999999999999999999999887 5565
No 433
>PRK12936 3-ketoacyl-(acyl-carrier-protein) reductase NodG; Reviewed
Probab=73.84 E-value=6 Score=37.37 Aligned_cols=35 Identities=34% Similarity=0.489 Sum_probs=29.4
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++++++++|.| .|.+|+.+++.|.+.|+.|+ +.+.
T Consensus 3 ~~~~~~vlItGa~g~iG~~la~~l~~~g~~v~-~~~~ 38 (245)
T PRK12936 3 DLSGRKALVTGASGGIGEEIARLLHAQGAIVG-LHGT 38 (245)
T ss_pred CCCCCEEEEECCCChHHHHHHHHHHHCCCEEE-EEcC
Confidence 56789999999 59999999999999999775 4433
No 434
>COG1063 Tdh Threonine dehydrogenase and related Zn-dependent dehydrogenases [Amino acid transport and metabolism / General function prediction only]
Probab=73.83 E-value=7.8 Score=40.53 Aligned_cols=33 Identities=33% Similarity=0.372 Sum_probs=29.0
Q ss_pred CcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
+.+|+|.|.|.+|.-++..+...|+..|-++|.
T Consensus 169 ~~~V~V~GaGpIGLla~~~a~~~Ga~~Viv~d~ 201 (350)
T COG1063 169 GGTVVVVGAGPIGLLAIALAKLLGASVVIVVDR 201 (350)
T ss_pred CCEEEEECCCHHHHHHHHHHHHcCCceEEEeCC
Confidence 339999999999999999999999877778787
No 435
>cd08293 PTGR2 Prostaglandin reductase. Prostaglandins and related eicosanoids are metabolized by the oxidation of the 15(S)-hydroxyl group of the NAD+-dependent (type I 15-PGDH) 15-prostaglandin dehydrogenase (15-PGDH) followed by reduction by NADPH/NADH-dependent (type II 15-PGDH) delta-13 15-prostaglandin reductase (13-PGR) to 15-keto-13,14,-dihydroprostaglandins. 13-PGR is a bifunctional enzyme, since it also has leukotriene B(4) 12-hydroxydehydrogenase activity. These 15-PGDH and related enzymes are members of the medium chain dehydrogenase/reductase family. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acid
Probab=73.78 E-value=10 Score=38.07 Aligned_cols=33 Identities=21% Similarity=0.155 Sum_probs=28.9
Q ss_pred CcEEEEecc-cHHHHHHHHHHHHCCC-EEEEEeCC
Q 010384 416 GLRCVVSGS-GKIAMHVLEKLIAYGA-IPVSVSDA 448 (512)
Q Consensus 416 GkrVaIQGf-GNVG~~aAe~L~e~Ga-kVVaVSDs 448 (512)
|.+|.|.|. |.||+.+++.+...|+ +|++++.+
T Consensus 155 ~~~VlI~ga~g~vG~~aiqlAk~~G~~~Vi~~~~s 189 (345)
T cd08293 155 NQTMVVSGAAGACGSLAGQIGRLLGCSRVVGICGS 189 (345)
T ss_pred CCEEEEECCCcHHHHHHHHHHHHcCCCEEEEEcCC
Confidence 489999997 9999999999999999 78877654
No 436
>PRK03562 glutathione-regulated potassium-efflux system protein KefC; Provisional
Probab=73.70 E-value=4.9 Score=45.58 Aligned_cols=32 Identities=22% Similarity=0.277 Sum_probs=28.1
Q ss_pred CcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+|+|.|||.+|+.+++.|.+.|..++. -|.
T Consensus 400 ~~~vII~G~Gr~G~~va~~L~~~g~~vvv-ID~ 431 (621)
T PRK03562 400 QPRVIIAGFGRFGQIVGRLLLSSGVKMTV-LDH 431 (621)
T ss_pred cCcEEEEecChHHHHHHHHHHhCCCCEEE-EEC
Confidence 36899999999999999999999998874 465
No 437
>PRK06753 hypothetical protein; Provisional
Probab=73.62 E-value=4.4 Score=41.52 Aligned_cols=32 Identities=16% Similarity=0.179 Sum_probs=28.0
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++|+|+|.|.+|..+|..|.+.|.+|+ |-|..
T Consensus 1 ~~V~IvGgG~aGl~~A~~L~~~g~~v~-v~E~~ 32 (373)
T PRK06753 1 MKIAIIGAGIGGLTAAALLQEQGHEVK-VFEKN 32 (373)
T ss_pred CEEEEECCCHHHHHHHHHHHhCCCcEE-EEecC
Confidence 479999999999999999999999875 76643
No 438
>cd08296 CAD_like Cinnamyl alcohol dehydrogenases (CAD). Cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family, reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short chain dehydrogenases (~ 250 amino acids vs. the ~ 350 amino acids of the MDR). The MDR proteins have 2 domains: a C-terminal NAD(P) binding-Rossmann fold domain of a beta-alpha form and an N-terminal catal
Probab=73.62 E-value=10 Score=38.24 Aligned_cols=35 Identities=20% Similarity=0.218 Sum_probs=30.8
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-.|.+|+|.|.|.+|+.+++.+..+|++|++++..
T Consensus 162 ~~~~~vlV~g~g~iG~~~~~~a~~~G~~vi~~~~~ 196 (333)
T cd08296 162 KPGDLVAVQGIGGLGHLAVQYAAKMGFRTVAISRG 196 (333)
T ss_pred CCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEeCC
Confidence 35789999999999999999999999998877654
No 439
>cd08301 alcohol_DH_plants Plant alcohol dehydrogenase. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes or ketones. Alcohol dehydrogenase in the liver converts ethanol and NAD+ to acetaldehyde and NADH, while in yeast and some other microorganisms ADH catalyzes the conversion acetaldehyde to ethanol in alcoholic fermentation. There are 7 vertebrate ADH 7 classes, 6 of which have been identified in humans. Class III, glutathione-dependent formaldehyde dehydrogenase, has been identified as the primordial form and exists in diverse species, including plants, micro-organisms, vertebrates, and invertebrates. Class I, typified by liver dehydrogenase, is an evolving form. Gene duplication and functional specialization of ADH into ADH classes and subclasses created numerous forms in vertebrates. For example, the A, B and C (formerly alpha, beta, gamma) human class I subunits have high overall structural similarity, but differ in the
Probab=73.57 E-value=9.8 Score=39.14 Aligned_cols=34 Identities=26% Similarity=0.276 Sum_probs=29.7
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCC-EEEEEeC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVSD 447 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~Ga-kVVaVSD 447 (512)
-.|.+|+|.|.|.||..+++.+...|+ +|++++.
T Consensus 186 ~~g~~VlV~G~g~vG~~a~q~ak~~G~~~vi~~~~ 220 (369)
T cd08301 186 KKGSTVAIFGLGAVGLAVAEGARIRGASRIIGVDL 220 (369)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHcCCCeEEEEcC
Confidence 468999999999999999999999999 6876643
No 440
>PRK06114 short chain dehydrogenase; Provisional
Probab=73.51 E-value=6.2 Score=38.12 Aligned_cols=33 Identities=24% Similarity=0.269 Sum_probs=28.9
Q ss_pred CCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaV 445 (512)
+++|++++|.| .|-+|+++|+.|.+.|++|+.+
T Consensus 5 ~~~~k~~lVtG~s~gIG~~ia~~l~~~G~~v~~~ 38 (254)
T PRK06114 5 DLDGQVAFVTGAGSGIGQRIAIGLAQAGADVALF 38 (254)
T ss_pred CCCCCEEEEECCCchHHHHHHHHHHHCCCEEEEE
Confidence 57899999998 4789999999999999999844
No 441
>PRK06130 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=73.47 E-value=4.8 Score=40.86 Aligned_cols=31 Identities=16% Similarity=0.232 Sum_probs=27.3
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|++|...|..|.+.|..|+ +.|.
T Consensus 5 ~~I~vIGaG~mG~~iA~~l~~~g~~V~-~~d~ 35 (311)
T PRK06130 5 QNLAIIGAGTMGSGIAALFARKGLQVV-LIDV 35 (311)
T ss_pred cEEEEECCCHHHHHHHHHHHhCCCeEE-EEEC
Confidence 579999999999999999999999876 4554
No 442
>TIGR01752 flav_long flavodoxin, long chain. Flavodoxins are small redox-active proteins with a flavin mononucleotide (FMN) prosthetic group. They can act in nitrogen fixation by nitrogenase, in sulfite reduction, and light-dependent NADP+ reduction in during photosynthesis, among other roles. This model describes the long chain type, typical for nitrogen fixation but associated with pyruvate formate-lyase activation and cobalamin-dependent methionine synthase activity in E. coli.
Probab=73.41 E-value=8.3 Score=36.06 Aligned_cols=51 Identities=22% Similarity=0.264 Sum_probs=36.3
Q ss_pred HHHHHHHc-CCCCCCcEEEEecccHH----------HHHHHHHHHHCCCEEEEEeCCCceee
Q 010384 403 AQLILADM-NKELKGLRCVVSGSGKI----------AMHVLEKLIAYGAIPVSVSDAKGYLV 453 (512)
Q Consensus 403 i~eal~~l-g~~L~GkrVaIQGfGNV----------G~~aAe~L~e~GakVVaVSDs~G~Iy 453 (512)
++.+++.+ ..+++|++|+|.|+|+- ...+.+.|.+.|+++|+-...+|+.+
T Consensus 64 ~~~fl~~l~~~~l~gk~v~~fg~g~~~~y~~~f~~a~~~l~~~l~~~G~~~ig~~~~~gy~~ 125 (167)
T TIGR01752 64 WEDFLPTLEELDFTGKTVALFGLGDQEGYSETFCDGMGILYDKIKARGAKVVGFWPTDGYHF 125 (167)
T ss_pred HHHHHHHhhcCCCCCCEEEEEecCCCCcccHHHHHHHHHHHHHHHHcCCeEEceecCCCccc
Confidence 34445544 34788999999999763 23455666678999999888888654
No 443
>PRK12747 short chain dehydrogenase; Provisional
Probab=73.37 E-value=6.4 Score=37.84 Aligned_cols=32 Identities=31% Similarity=0.395 Sum_probs=27.9
Q ss_pred CCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEE
Q 010384 414 LKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 414 L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaV 445 (512)
+++++++|.| .|-+|.++|+.|++.|++|+.+
T Consensus 2 ~~~k~~lItGas~gIG~~ia~~l~~~G~~v~~~ 34 (252)
T PRK12747 2 LKGKVALVTGASRGIGRAIAKRLANDGALVAIH 34 (252)
T ss_pred CCCCEEEEeCCCChHHHHHHHHHHHCCCeEEEE
Confidence 4689999998 4889999999999999998754
No 444
>PRK11559 garR tartronate semialdehyde reductase; Provisional
Probab=73.21 E-value=5.1 Score=40.33 Aligned_cols=31 Identities=23% Similarity=0.270 Sum_probs=27.5
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|.|.|+|++|...|+.|.+.|.+|+ +.|.
T Consensus 3 ~~IgviG~G~mG~~~a~~l~~~g~~v~-~~d~ 33 (296)
T PRK11559 3 MKVGFIGLGIMGKPMSKNLLKAGYSLV-VYDR 33 (296)
T ss_pred ceEEEEccCHHHHHHHHHHHHCCCeEE-EEcC
Confidence 579999999999999999999999886 5565
No 445
>PRK12743 oxidoreductase; Provisional
Probab=73.16 E-value=6.5 Score=38.04 Aligned_cols=32 Identities=16% Similarity=-0.051 Sum_probs=27.3
Q ss_pred CcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 416 GLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 416 GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
+++|+|.|. |.+|+.+|+.|++.|++|+.+..
T Consensus 2 ~k~vlItGas~giG~~~a~~l~~~G~~V~~~~~ 34 (256)
T PRK12743 2 AQVAIVTASDSGIGKACALLLAQQGFDIGITWH 34 (256)
T ss_pred CCEEEEECCCchHHHHHHHHHHHCCCEEEEEeC
Confidence 578888885 78999999999999999986543
No 446
>PRK06701 short chain dehydrogenase; Provisional
Probab=73.16 E-value=6 Score=39.66 Aligned_cols=34 Identities=26% Similarity=0.253 Sum_probs=30.0
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.+++|++++|.|. |-+|.++|+.|++.|++|+.+
T Consensus 42 ~~~~~k~iLItGasggIG~~la~~l~~~G~~V~l~ 76 (290)
T PRK06701 42 GKLKGKVALITGGDSGIGRAVAVLFAKEGADIAIV 76 (290)
T ss_pred cCCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEE
Confidence 4678999999985 889999999999999998754
No 447
>PRK08229 2-dehydropantoate 2-reductase; Provisional
Probab=73.14 E-value=4.6 Score=41.33 Aligned_cols=29 Identities=31% Similarity=0.307 Sum_probs=26.3
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEE
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaV 445 (512)
++|+|.|.|.+|...|..|.+.|..|+.+
T Consensus 3 mkI~IiG~G~mG~~~A~~L~~~G~~V~~~ 31 (341)
T PRK08229 3 ARICVLGAGSIGCYLGGRLAAAGADVTLI 31 (341)
T ss_pred ceEEEECCCHHHHHHHHHHHhcCCcEEEE
Confidence 57999999999999999999999988744
No 448
>PLN02852 ferredoxin-NADP+ reductase
Probab=73.14 E-value=4.5 Score=44.89 Aligned_cols=35 Identities=26% Similarity=0.286 Sum_probs=30.2
Q ss_pred CCCcEEEEecccHHHHHHHHHHHH--CCCEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIA--YGAIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e--~GakVVaVSDs~ 449 (512)
..+++|+|+|.|..|.++|..|.+ .|++|+ |-|..
T Consensus 24 ~~~~~VaIVGaGPAGl~AA~~L~~~~~g~~Vt-v~E~~ 60 (491)
T PLN02852 24 SEPLHVCVVGSGPAGFYTADKLLKAHDGARVD-IIERL 60 (491)
T ss_pred CCCCcEEEECccHHHHHHHHHHHhhCCCCeEE-EEecC
Confidence 457899999999999999999987 799986 77754
No 449
>PLN02657 3,8-divinyl protochlorophyllide a 8-vinyl reductase
Probab=73.11 E-value=6.2 Score=41.84 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=32.7
Q ss_pred cCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 410 MNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 410 lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+...++++|.|.|. |.+|+++++.|.+.|.+|++++
T Consensus 54 ~~~~~~~~kVLVtGatG~IG~~l~~~Ll~~G~~V~~l~ 91 (390)
T PLN02657 54 RSKEPKDVTVLVVGATGYIGKFVVRELVRRGYNVVAVA 91 (390)
T ss_pred cccCCCCCEEEEECCCcHHHHHHHHHHHHCCCEEEEEE
Confidence 356678899999996 9999999999999999998775
No 450
>PF07992 Pyr_redox_2: Pyridine nucleotide-disulphide oxidoreductase; InterPro: IPR023753 FAD flavoproteins belonging to the family of pyridine nucleotide-disulphide oxidoreductases (glutathione reductase, trypanothione reductase, lipoamide dehydrogenase, mercuric reductase, thioredoxin reductase, alkyl hydroperoxide reductase) share sequence similarity with a number of other flavoprotein oxidoreductases, in particular with ferredoxin-NAD+ reductases involved in oxidative metabolism of a variety of hydrocarbons (rubredoxin reductase, putidaredoxin reductase, terpredoxin reductase, ferredoxin-NAD+ reductase components of benzene 1,2-dioxygenase, toluene 1,2-dioxygenase, chlorobenzene dioxygenase, biphenyl dioxygenase), NADH oxidase and NADH peroxidase [, , ]. Comparison of the crystal structures of human glutathione reductase and Escherichia coli thioredoxin reductase reveals different locations of their active sites, suggesting that the enzymes diverged from an ancestral FAD/NAD(P)H reductase and acquired their disulphide reductase activities independently []. Despite functional similarities, oxidoreductases of this family show no sequence similarity with adrenodoxin reductases [] and flavoprotein pyridine nucleotide cytochrome reductases (FPNCR) []. Assuming that disulphide reductase activity emerged later, during divergent evolution, the family can be referred to as FAD-dependent pyridine nucleotide reductases, FADPNR. To date, 3D structures of glutathione reductase [], thioredoxin reductase [], mercuric reductase [], lipoamide dehydrogenase [], trypanothione reductase [] and NADH peroxidase [] have been solved. The enzymes share similar tertiary structures based on a doubly-wound alpha/beta fold, but the relative orientations of their FAD- and NAD(P)H-binding domains may vary significantly. By contrast with the FPNCR family, the folds of the FAD- and NAD(P)H-binding domains are similar, suggesting that the domains evolved by gene duplication []. This entry describes the FAD binding domain which has a nested NADH binding domain and is found in both class I and class II oxidoreductases. ; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 3IC9_A 1Q1W_A 3LB8_A 1Q1R_B 3GD4_A 1GV4_A 3GD3_A 2EQ9_E 2EQ6_B 2EQ8_E ....
Probab=73.10 E-value=6 Score=36.37 Aligned_cols=32 Identities=19% Similarity=0.271 Sum_probs=27.9
Q ss_pred EEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 418 RCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 418 rVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
+|+|+|.|..|..+|..|.+.|++|+-|....
T Consensus 1 ~vvIIGgG~aGl~aA~~l~~~~~~v~ii~~~~ 32 (201)
T PF07992_consen 1 DVVIIGGGPAGLSAALELARPGAKVLIIEKSP 32 (201)
T ss_dssp EEEEESSSHHHHHHHHHHHHTTSEEEEESSSS
T ss_pred CEEEEecHHHHHHHHHHHhcCCCeEEEEeccc
Confidence 68999999999999999999999998664443
No 451
>PRK00066 ldh L-lactate dehydrogenase; Reviewed
Probab=73.03 E-value=5.4 Score=41.49 Aligned_cols=34 Identities=18% Similarity=0.291 Sum_probs=28.2
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCE-EEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAI-PVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~Gak-VVaVSDs 448 (512)
.+++|+|.|.|+||+.+|..|...|.. -+.+.|.
T Consensus 5 ~~~ki~iiGaG~vG~~~a~~l~~~~~~~el~L~D~ 39 (315)
T PRK00066 5 QHNKVVLVGDGAVGSSYAYALVNQGIADELVIIDI 39 (315)
T ss_pred CCCEEEEECCCHHHHHHHHHHHhcCCCCEEEEEeC
Confidence 468999999999999999999988862 2457777
No 452
>PRK06113 7-alpha-hydroxysteroid dehydrogenase; Validated
Probab=72.97 E-value=6.2 Score=38.09 Aligned_cols=34 Identities=21% Similarity=0.317 Sum_probs=29.5
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++++|+|.|. |.+|.++++.|.+.|++|+.++
T Consensus 8 ~l~~k~vlVtG~s~gIG~~la~~l~~~G~~vv~~~ 42 (255)
T PRK06113 8 RLDGKCAIITGAGAGIGKEIAITFATAGASVVVSD 42 (255)
T ss_pred CcCCCEEEEECCCchHHHHHHHHHHHCCCeEEEEe
Confidence 467999999884 8999999999999999998553
No 453
>PF01266 DAO: FAD dependent oxidoreductase; InterPro: IPR006076 This entry includes various FAD dependent oxidoreductases: Glycerol-3-phosphate dehydrogenase (1.1.99.5 from EC), Sarcosine oxidase beta subunit (1.5.3.1 from EC), D-alanine oxidase (1.4.99.1 from EC), D-aspartate oxidase (1.4.3.1 from EC). D-amino acid oxidase (1.4.3.3 from EC) (DAMOX or DAO) is an FAD flavoenzyme that catalyzes the oxidation of neutral and basic D-amino acids into their corresponding keto acids. DAOs have been characterised and sequenced in fungi and vertebrates where they are known to be located in the peroxisomes. D-aspartate oxidase (1.4.3.1 from EC) (DASOX) [] is an enzyme, structurally related to DAO, which catalyzes the same reaction but is active only toward dicarboxylic D-amino acids. In DAO, a conserved histidine has been shown [] to be important for the enzyme's catalytic activity.; GO: 0016491 oxidoreductase activity, 0055114 oxidation-reduction process; PDB: 2RGO_A 3NYE_A 3NYF_A 3NYC_A 3SM8_A 3SGL_A 3PVC_A 3DME_A 2GAH_B 3NLC_A ....
Probab=72.93 E-value=4.8 Score=39.75 Aligned_cols=30 Identities=17% Similarity=0.226 Sum_probs=27.1
Q ss_pred EEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 419 CVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 419 VaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
|+|+|.|-+|..+|..|++.|.+|+ |-|..
T Consensus 2 vvIIGaGi~G~~~A~~La~~G~~V~-l~e~~ 31 (358)
T PF01266_consen 2 VVIIGAGIAGLSTAYELARRGHSVT-LLERG 31 (358)
T ss_dssp EEEECTSHHHHHHHHHHHHTTSEEE-EEESS
T ss_pred EEEECcCHHHHHHHHHHHHCCCeEE-EEeec
Confidence 8999999999999999999999986 66654
No 454
>PRK11064 wecC UDP-N-acetyl-D-mannosamine dehydrogenase; Provisional
Probab=72.88 E-value=4.5 Score=43.53 Aligned_cols=31 Identities=19% Similarity=0.177 Sum_probs=27.8
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|.||..+|..|++.|..|+++ |.
T Consensus 4 ~kI~VIGlG~~G~~~A~~La~~G~~V~~~-D~ 34 (415)
T PRK11064 4 ETISVIGLGYIGLPTAAAFASRQKQVIGV-DI 34 (415)
T ss_pred cEEEEECcchhhHHHHHHHHhCCCEEEEE-eC
Confidence 68999999999999999999999998744 54
No 455
>COG0644 FixC Dehydrogenases (flavoproteins) [Energy production and conversion]
Probab=72.86 E-value=4.7 Score=42.47 Aligned_cols=46 Identities=15% Similarity=0.161 Sum_probs=34.9
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCCCce----eeCCCCCCHhhH
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAKGY----LVDEDGFDYMKI 463 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~G~----Iydp~GLDie~L 463 (512)
..|+|+|.|..|..+|..|++.|++|+ |-|.... ..+..+++...+
T Consensus 4 ~DVvIVGaGPAGs~aA~~la~~G~~Vl-vlEk~~~~G~k~~~~~~~~~~~l 53 (396)
T COG0644 4 YDVVIVGAGPAGSSAARRLAKAGLDVL-VLEKGSEPGAKPCCGGGLSPRAL 53 (396)
T ss_pred eeEEEECCchHHHHHHHHHHHcCCeEE-EEecCCCCCCCccccceechhhH
Confidence 469999999999999999999999987 7776432 223355665554
No 456
>TIGR01279 DPOR_bchN light-independent protochlorophyllide reductase, N subunit. This enzyme describes the N subunit of the dark form protochlorophyllide reductase, a nitrogenase-like enzyme involved in bacteriochlorophyll biosynthesis. This subunit shows homology to the nitrogenase molybdenum-iron protein NifN.
Probab=72.80 E-value=7 Score=41.93 Aligned_cols=44 Identities=16% Similarity=0.173 Sum_probs=36.7
Q ss_pred HHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 406 ILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 406 al~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
++......+.||||+|.|-+....+++++|.++|.++|+++...
T Consensus 264 ~l~~~~~~l~Gkrv~i~gd~~~~~~l~~~L~elGm~~v~~~t~~ 307 (407)
T TIGR01279 264 ALEPHTQLLRGKKIFFFGDNLLELPLARFLKRCGMEVVECGTPY 307 (407)
T ss_pred HHHHHHHhcCCCEEEEECCchHHHHHHHHHHHCCCEEEEecCCC
Confidence 33444456899999999999999999999999999999887643
No 457
>PRK08690 enoyl-(acyl carrier protein) reductase; Provisional
Probab=72.77 E-value=5.5 Score=39.09 Aligned_cols=31 Identities=23% Similarity=0.293 Sum_probs=27.9
Q ss_pred CCCcEEEEec---ccHHHHHHHHHHHHCCCEEEE
Q 010384 414 LKGLRCVVSG---SGKIAMHVLEKLIAYGAIPVS 444 (512)
Q Consensus 414 L~GkrVaIQG---fGNVG~~aAe~L~e~GakVVa 444 (512)
++|++++|-| .+-+|+.+|+.|++.|++|+.
T Consensus 4 ~~~k~~lITGa~~~~GIG~a~a~~l~~~G~~v~~ 37 (261)
T PRK08690 4 LQGKKILITGMISERSIAYGIAKACREQGAELAF 37 (261)
T ss_pred cCCcEEEEECCCCCCcHHHHHHHHHHHCCCEEEE
Confidence 7899999999 457999999999999999874
No 458
>PRK08177 short chain dehydrogenase; Provisional
Probab=72.72 E-value=5.6 Score=37.70 Aligned_cols=30 Identities=13% Similarity=0.290 Sum_probs=26.4
Q ss_pred cEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
++|+|.| .|.+|+.+|+.|++.|++|+.++
T Consensus 2 k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 32 (225)
T PRK08177 2 RTALIIGASRGLGLGLVDRLLERGWQVTATV 32 (225)
T ss_pred CEEEEeCCCchHHHHHHHHHHhCCCEEEEEe
Confidence 5688888 69999999999999999998665
No 459
>TIGR01963 PHB_DH 3-hydroxybutyrate dehydrogenase. This model represents a subfamily of the short chain dehydrogenases. Characterized members so far as 3-hydroxybutyrate dehydrogenases and are found in species that accumulate ester polmers called polyhydroxyalkanoic acids (PHAs) under certain conditions. Several members of the family are from species not known to accumulate PHAs, including Oceanobacillus iheyensis and Bacillus subtilis. However, polymer formation is not required for there be a role for 3-hydroxybutyrate dehydrogenase; it may be members of this family have the same function in those species.
Probab=72.63 E-value=5.6 Score=37.82 Aligned_cols=31 Identities=29% Similarity=0.348 Sum_probs=26.9
Q ss_pred CcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 416 GLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 416 GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
+++++|.| .|-+|+.+++.|.+.|++|+.++
T Consensus 1 ~~~vlItGa~g~lG~~l~~~l~~~g~~v~~~~ 32 (255)
T TIGR01963 1 GKTALVTGAASGIGLAIALALAAAGANVVVND 32 (255)
T ss_pred CCEEEEcCCcchHHHHHHHHHHHCCCEEEEEe
Confidence 46899998 59999999999999999988653
No 460
>PRK14804 ornithine carbamoyltransferase; Provisional
Probab=72.61 E-value=27 Score=36.53 Aligned_cols=63 Identities=11% Similarity=0.068 Sum_probs=41.9
Q ss_pred CcccccCCCCCCCCCchhHHHHHHHHHHHHcCC-CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 380 GPRIFWSGSSLRTEATGYGLVFFAQLILADMNK-ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 380 GKpl~~GGs~gR~eATG~GV~~~i~eal~~lg~-~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
..|+.-+|+...-.--+.-=++.+++ +.|. +++|+||++.|- +||....+..+..+|+.|.-+
T Consensus 119 ~vPVINag~~~~HPtQaL~Dl~Ti~e---~~g~~~l~g~~va~vGd~~rv~~Sl~~~~~~~G~~v~~~ 183 (311)
T PRK14804 119 QVPVINGCDNMFHPCQSLADIMTIAL---DSPEIPLNQKQLTYIGVHNNVVNSLIGITAALGIHLTLV 183 (311)
T ss_pred CCCEEECCCCCCChHHHHHHHHHHHH---HhCCCCCCCCEEEEECCCCcHHHHHHHHHHHcCCEEEEE
Confidence 34666666543222222222344433 3454 689999999997 799999999999999988633
No 461
>PRK07454 short chain dehydrogenase; Provisional
Probab=72.47 E-value=6.3 Score=37.52 Aligned_cols=32 Identities=16% Similarity=0.094 Sum_probs=27.5
Q ss_pred CCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
+++++.|.|. |.+|+.+++.|.+.|++|+.++
T Consensus 5 ~~k~vlItG~sg~iG~~la~~l~~~G~~V~~~~ 37 (241)
T PRK07454 5 SMPRALITGASSGIGKATALAFAKAGWDLALVA 37 (241)
T ss_pred CCCEEEEeCCCchHHHHHHHHHHHCCCEEEEEe
Confidence 4578999985 9999999999999999987554
No 462
>PRK09291 short chain dehydrogenase; Provisional
Probab=72.43 E-value=6.2 Score=37.79 Aligned_cols=32 Identities=13% Similarity=0.160 Sum_probs=27.6
Q ss_pred CcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 416 GLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 416 GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
+++++|.|. |.+|+.+++.|.+.|++|++++-
T Consensus 2 ~~~vlVtGasg~iG~~ia~~l~~~G~~v~~~~r 34 (257)
T PRK09291 2 SKTILITGAGSGFGREVALRLARKGHNVIAGVQ 34 (257)
T ss_pred CCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEeC
Confidence 568888885 89999999999999999987653
No 463
>PRK07530 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=72.35 E-value=5.4 Score=40.23 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|++|...|..|+..|..|+ +.|.
T Consensus 5 ~kI~vIGaG~mG~~iA~~la~~G~~V~-l~d~ 35 (292)
T PRK07530 5 KKVGVIGAGQMGNGIAHVCALAGYDVL-LNDV 35 (292)
T ss_pred CEEEEECCcHHHHHHHHHHHHCCCeEE-EEeC
Confidence 589999999999999999999999886 5665
No 464
>PRK07729 glyceraldehyde-3-phosphate dehydrogenase; Validated
Probab=72.35 E-value=7.9 Score=41.31 Aligned_cols=51 Identities=16% Similarity=0.260 Sum_probs=40.4
Q ss_pred cEEEEecccHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|-|||-+|+.+.+.+.+. ...||+|-|. .|++.+..|+++-..+|.+
T Consensus 3 ~ki~INGfGRIGR~~~r~~~~~~~~~vvaINd~---------~~~~~~ayll~yDS~hG~~ 54 (343)
T PRK07729 3 TKVAINGFGRIGRMVFRKAIKESAFEIVAINAS---------YPSETLAHLIKYDTVHGKF 54 (343)
T ss_pred eEEEEECcChHHHHHHHHHhhcCCcEEEEecCC---------CCHHHHHHHhhhccCCCCC
Confidence 4899999999999999997754 5899999875 3677777778776666643
No 465
>TIGR03026 NDP-sugDHase nucleotide sugar dehydrogenase. All of these enzymes contain three Pfam domains, pfam03721, pfam00984, and pfam03720 for the N-terminal, central, and C-terminal regions respectively.
Probab=72.33 E-value=4.4 Score=43.19 Aligned_cols=31 Identities=19% Similarity=0.286 Sum_probs=27.4
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|.||..+|..|++.|..|++ .|.
T Consensus 1 mkI~vIGlG~~G~~lA~~La~~G~~V~~-~d~ 31 (411)
T TIGR03026 1 MKIAVIGLGYVGLPLAALLADLGHEVTG-VDI 31 (411)
T ss_pred CEEEEECCCchhHHHHHHHHhcCCeEEE-EEC
Confidence 3799999999999999999999999874 465
No 466
>PRK07097 gluconate 5-dehydrogenase; Provisional
Probab=72.31 E-value=6.6 Score=38.21 Aligned_cols=36 Identities=25% Similarity=0.265 Sum_probs=30.4
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.++++++++|.|. |.+|..+|+.|++.|++|+.+ +.
T Consensus 6 ~~~~~k~~lItGa~~~iG~~ia~~l~~~G~~vv~~-~~ 42 (265)
T PRK07097 6 FSLKGKIALITGASYGIGFAIAKAYAKAGATIVFN-DI 42 (265)
T ss_pred cCCCCCEEEEeCCCchHHHHHHHHHHHCCCeEEEE-eC
Confidence 3678999999885 899999999999999998744 54
No 467
>PRK13303 L-aspartate dehydrogenase; Provisional
Probab=72.27 E-value=5.2 Score=40.42 Aligned_cols=32 Identities=25% Similarity=0.132 Sum_probs=27.5
Q ss_pred cEEEEecccHHHHHHHHHHHHC-CCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GakVVaVSDs 448 (512)
+||+|.|+|++|+..++.|.+. +..+++|++.
T Consensus 2 ~rVgIiG~G~iG~~~~~~l~~~~~~~l~~v~~~ 34 (265)
T PRK13303 2 MKVAMIGFGAIGAAVLELLEHDPDLRVDWVIVP 34 (265)
T ss_pred cEEEEECCCHHHHHHHHHHhhCCCceEEEEEEc
Confidence 5899999999999999998875 6788888754
No 468
>PRK08300 acetaldehyde dehydrogenase; Validated
Probab=72.20 E-value=6.1 Score=41.43 Aligned_cols=34 Identities=21% Similarity=0.345 Sum_probs=28.9
Q ss_pred CCcEEEEecccHHHHHHHHHHHH-CCCEEEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIA-YGAIPVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e-~GakVVaVSDs 448 (512)
+..+|+|.|.|++|...+..+.+ .+..+++|+|.
T Consensus 3 ~klrVAIIGtG~IGt~hm~~l~~~~~velvAVvdi 37 (302)
T PRK08300 3 SKLKVAIIGSGNIGTDLMIKILRSEHLEPGAMVGI 37 (302)
T ss_pred CCCeEEEEcCcHHHHHHHHHHhcCCCcEEEEEEeC
Confidence 45789999999999987777765 57899999987
No 469
>PLN02740 Alcohol dehydrogenase-like
Probab=72.17 E-value=8.7 Score=40.01 Aligned_cols=33 Identities=27% Similarity=0.329 Sum_probs=28.7
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCC-EEEEEe
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGA-IPVSVS 446 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~Ga-kVVaVS 446 (512)
-.|.+|+|.|.|.||..+++.+...|+ +|+++.
T Consensus 197 ~~g~~VlV~G~G~vG~~a~q~ak~~G~~~Vi~~~ 230 (381)
T PLN02740 197 QAGSSVAIFGLGAVGLAVAEGARARGASKIIGVD 230 (381)
T ss_pred CCCCEEEEECCCHHHHHHHHHHHHCCCCcEEEEc
Confidence 358999999999999999999999999 577553
No 470
>PRK09134 short chain dehydrogenase; Provisional
Probab=72.10 E-value=8 Score=37.38 Aligned_cols=35 Identities=17% Similarity=0.095 Sum_probs=29.5
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
+..+++++|.|. |.+|.++++.|.+.|++|+.+..
T Consensus 6 ~~~~k~vlItGas~giG~~la~~l~~~g~~v~~~~~ 41 (258)
T PRK09134 6 MAAPRAALVTGAARRIGRAIALDLAAHGFDVAVHYN 41 (258)
T ss_pred CCCCCEEEEeCCCcHHHHHHHHHHHHCCCEEEEEeC
Confidence 356789999985 89999999999999999986544
No 471
>KOG0455 consensus Homoserine dehydrogenase [Amino acid transport and metabolism]
Probab=72.07 E-value=4.5 Score=42.02 Aligned_cols=42 Identities=19% Similarity=0.401 Sum_probs=33.1
Q ss_pred CcEEEEecccHHHHHHHHHHHHCC---------CEEEEEeCCCceeeCCCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYG---------AIPVSVSDAKGYLVDEDG 457 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~G---------akVVaVSDs~G~Iydp~G 457 (512)
...|+|.|.|+||+++.+.+.... ..||+|+|+.+.+...|=
T Consensus 3 ~vnVa~~G~G~vG~~lL~qi~~~~s~~~~~tv~~nvv~v~~~e~~~~skD~ 53 (364)
T KOG0455|consen 3 KVNVALMGCGGVGRHLLQQIVSCRSLHAKMTVHINVVGVCDSESLVASKDV 53 (364)
T ss_pred cccEEEEeccchHHHHHHHHHHHhhhhccCceEEEEEEEeccccccccccc
Confidence 356899999999999988776432 589999999988765543
No 472
>PRK07679 pyrroline-5-carboxylate reductase; Reviewed
Probab=72.04 E-value=6.5 Score=39.54 Aligned_cols=33 Identities=21% Similarity=0.210 Sum_probs=26.9
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCC----CEEEEEeCC
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYG----AIPVSVSDA 448 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~G----akVVaVSDs 448 (512)
+.++|.|+|.|++|...|+.|.+.| ..| .++|.
T Consensus 2 ~~mkI~~IG~G~mG~aia~~l~~~g~~~~~~v-~v~~r 38 (279)
T PRK07679 2 SIQNISFLGAGSIAEAIIGGLLHANVVKGEQI-TVSNR 38 (279)
T ss_pred CCCEEEEECccHHHHHHHHHHHHCCCCCcceE-EEECC
Confidence 4579999999999999999999988 344 35654
No 473
>PRK05708 2-dehydropantoate 2-reductase; Provisional
Probab=72.01 E-value=4.9 Score=41.23 Aligned_cols=31 Identities=13% Similarity=0.098 Sum_probs=27.2
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
+||+|.|.|.||...|-+|++.|..|+-|.-
T Consensus 3 m~I~IiGaGaiG~~~a~~L~~~G~~V~lv~r 33 (305)
T PRK05708 3 MTWHILGAGSLGSLWACRLARAGLPVRLILR 33 (305)
T ss_pred ceEEEECCCHHHHHHHHHHHhCCCCeEEEEe
Confidence 5899999999999999999999998775543
No 474
>PRK07985 oxidoreductase; Provisional
Probab=71.98 E-value=6 Score=39.77 Aligned_cols=33 Identities=21% Similarity=0.165 Sum_probs=29.6
Q ss_pred CCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.++|++++|.|. |.+|+++|+.|++.|++|+.+
T Consensus 46 ~~~~k~vlITGas~gIG~aia~~L~~~G~~Vi~~ 79 (294)
T PRK07985 46 RLKDRKALVTGGDSGIGRAAAIAYAREGADVAIS 79 (294)
T ss_pred ccCCCEEEEECCCCcHHHHHHHHHHHCCCEEEEe
Confidence 478999999995 899999999999999999854
No 475
>TIGR02822 adh_fam_2 zinc-binding alcohol dehydrogenase family protein. Members of this model form a distinct subset of the larger family of oxidoreductases that includes zinc-binding alcohol dehydrogenases and NADPH:quinone reductases (pfam00107). The gene neighborhood of members of this family is not conserved and it appears that no members are characterized. The sequence of the family includes 6 invariant cysteine residues and one invariant histidine. It appears that no member is characterized.
Probab=71.87 E-value=9.6 Score=38.94 Aligned_cols=32 Identities=25% Similarity=0.168 Sum_probs=28.8
Q ss_pred CCcEEEEecccHHHHHHHHHHHHCCCEEEEEe
Q 010384 415 KGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 415 ~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVS 446 (512)
.|.+|+|.|.|.+|..+++.+...|++|++++
T Consensus 165 ~g~~VlV~G~g~iG~~a~~~a~~~G~~vi~~~ 196 (329)
T TIGR02822 165 PGGRLGLYGFGGSAHLTAQVALAQGATVHVMT 196 (329)
T ss_pred CCCEEEEEcCCHHHHHHHHHHHHCCCeEEEEe
Confidence 58999999999999999999999999988664
No 476
>PTZ00117 malate dehydrogenase; Provisional
Probab=71.80 E-value=6.1 Score=41.08 Aligned_cols=35 Identities=20% Similarity=0.227 Sum_probs=29.6
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCC-CEEEEEeCCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYG-AIPVSVSDAK 449 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~G-akVVaVSDs~ 449 (512)
.+.++|+|.|.|+||+.+|..|...| +. +.+-|.+
T Consensus 3 ~~~~KI~IIGaG~vG~~ia~~l~~~~~~~-l~L~Di~ 38 (319)
T PTZ00117 3 VKRKKISMIGAGQIGSTVALLILQKNLGD-VVLYDVI 38 (319)
T ss_pred CCCcEEEEECCCHHHHHHHHHHHHCCCCe-EEEEECC
Confidence 46789999999999999999999888 56 5577874
No 477
>PRK06847 hypothetical protein; Provisional
Probab=71.67 E-value=5.3 Score=40.89 Aligned_cols=32 Identities=13% Similarity=0.095 Sum_probs=28.4
Q ss_pred CcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 416 GLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 416 GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
-++|+|+|.|..|..+|..|.+.|.+|+ |-|.
T Consensus 4 ~~~V~IVGaG~aGl~~A~~L~~~g~~v~-v~E~ 35 (375)
T PRK06847 4 VKKVLIVGGGIGGLSAAIALRRAGIAVD-LVEI 35 (375)
T ss_pred cceEEEECCCHHHHHHHHHHHhCCCCEE-EEec
Confidence 4689999999999999999999999976 6664
No 478
>cd01979 Pchlide_reductase_N Pchlide_reductase_N: N protein of the NB protein complex of Protochlorophyllide (Pchlide)_reductase. Pchlide reductase catalyzes the reductive formation of chlorophyllide (chlide) from protochlorophyllide (pchlide) during biosynthesis of chlorophylls and bacteriochlorophylls. This group contains both the light-independent Pchlide reductase (DPOR) and light-dependent Pchlide reductase (LPOR). Angiosperms contain only LPOR, cyanobacteria, algae and gymnosperms contain both DPOR and LPOR, primitive anoxygenic photosynthetic bacteria contain only DPOR. NB is structurally similar to the FeMo protein of nitrogenase, forming an N2B2 heterotetramer. N and B are homologous to the FeMo alpha and beta subunits respectively. Also in common with nitrogenase in vitro DPOR activity requires ATP hydrolysis and dithoionite or ferredoxin as electron donor. The NB protein complex may serve as a catalytic site for Pchlide reduction similar to MoFe for nitrogen reduction.
Probab=71.57 E-value=6.7 Score=41.79 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=35.9
Q ss_pred HHHHHcCCCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 405 LILADMNKELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 405 eal~~lg~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSD 447 (512)
.++......++||||+|.|-+.....++++|.++|..||+++.
T Consensus 265 ~~l~~~~~~l~Gkrv~i~g~~~~~~~la~~L~elGm~vv~~~t 307 (396)
T cd01979 265 RALEPYLDLLRGKSIFFMGDNLLEIPLARFLTRCGMIVVEVGT 307 (396)
T ss_pred HHHHHHHHhhcCCEEEEECCchHHHHHHHHHHHCCCEEEeeCC
Confidence 3344445668999999999999999999999999999998854
No 479
>PRK11891 aspartate carbamoyltransferase; Provisional
Probab=71.53 E-value=19 Score=39.56 Aligned_cols=92 Identities=15% Similarity=0.162 Sum_probs=54.6
Q ss_pred CCChhhHHHHHHHHhhHh---CCCC------cccCCcccccCCC-CCCCCCchhHHHHHHHHHHHHcCCCCCCcEEEEec
Q 010384 354 GVGTREMGYLFGQYRRLA---GHFQ------GSFTGPRIFWSGS-SLRTEATGYGLVFFAQLILADMNKELKGLRCVVSG 423 (512)
Q Consensus 354 GT~~reMawm~d~Y~~~~---g~~~------g~vTGKpl~~GGs-~gR~eATG~GV~~~i~eal~~lg~~L~GkrVaIQG 423 (512)
|-+-+|-+.+++.|..+. .... +-....|+.-+|+ .+.-.--+..=++.+++-....|..++|+||++.|
T Consensus 169 GESi~DTarvLs~y~D~IviR~~~~~~~~e~A~~s~vPVINAgdg~~~HPtQaLaDl~Ti~E~~g~~g~~l~G~kIa~vG 248 (429)
T PRK11891 169 GESIYDTSRVMSGYVDALVIRHPEQGSVAEFARATNLPVINGGDGPGEHPSQALLDLYTIQREFSRLGKIVDGAHIALVG 248 (429)
T ss_pred CCCHHHHHHHHHHhCCEEEEeCCchhHHHHHHHhCCCCEEECCCCCCCCcHHHHHHHHHHHHHhCccCCCcCCCEEEEEC
Confidence 444566666667764211 1111 1135678877774 23222333333444444321123359999999999
Q ss_pred c---cHHHHHHHHHHHHC-CCEEEEE
Q 010384 424 S---GKIAMHVLEKLIAY-GAIPVSV 445 (512)
Q Consensus 424 f---GNVG~~aAe~L~e~-GakVVaV 445 (512)
- +||....+..+..+ |+.|+-+
T Consensus 249 D~~~~rv~~Sl~~~la~~~G~~v~l~ 274 (429)
T PRK11891 249 DLKYGRTVHSLVKLLALYRGLKFTLV 274 (429)
T ss_pred cCCCChHHHHHHHHHHHhcCCEEEEE
Confidence 8 59999999998886 9998733
No 480
>CHL00194 ycf39 Ycf39; Provisional
Probab=71.52 E-value=6 Score=40.06 Aligned_cols=31 Identities=13% Similarity=0.290 Sum_probs=27.6
Q ss_pred cEEEEec-ccHHHHHHHHHHHHCCCEEEEEeC
Q 010384 417 LRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 417 krVaIQG-fGNVG~~aAe~L~e~GakVVaVSD 447 (512)
++|.|.| .|.+|+++++.|.+.|.+|++++-
T Consensus 1 MkIlVtGatG~iG~~lv~~Ll~~g~~V~~l~R 32 (317)
T CHL00194 1 MSLLVIGATGTLGRQIVRQALDEGYQVRCLVR 32 (317)
T ss_pred CEEEEECCCcHHHHHHHHHHHHCCCeEEEEEc
Confidence 4789999 599999999999999999988863
No 481
>PLN02572 UDP-sulfoquinovose synthase
Probab=71.45 E-value=5.8 Score=42.84 Aligned_cols=35 Identities=20% Similarity=0.116 Sum_probs=31.1
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
..+++++|.|-|. |-+|+++++.|.+.|+.|+++.
T Consensus 43 ~~~~~k~VLVTGatGfIGs~Lv~~L~~~G~~V~~~d 78 (442)
T PLN02572 43 SSSKKKKVMVIGGDGYCGWATALHLSKRGYEVAIVD 78 (442)
T ss_pred ccccCCEEEEECCCcHHHHHHHHHHHHCCCeEEEEe
Confidence 4678899999995 9999999999999999998653
No 482
>PRK06603 enoyl-(acyl carrier protein) reductase; Provisional
Probab=71.32 E-value=6.4 Score=38.60 Aligned_cols=33 Identities=18% Similarity=0.176 Sum_probs=28.2
Q ss_pred CCCCcEEEEeccc---HHHHHHHHHHHHCCCEEEEE
Q 010384 413 ELKGLRCVVSGSG---KIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 413 ~L~GkrVaIQGfG---NVG~~aAe~L~e~GakVVaV 445 (512)
.++||+++|.|.+ -+|..+|+.|++.|++|+.+
T Consensus 5 ~~~~k~~lITGas~~~GIG~a~a~~la~~G~~v~~~ 40 (260)
T PRK06603 5 LLQGKKGLITGIANNMSISWAIAQLAKKHGAELWFT 40 (260)
T ss_pred ccCCcEEEEECCCCCcchHHHHHHHHHHcCCEEEEE
Confidence 4688999999986 39999999999999998743
No 483
>PRK07424 bifunctional sterol desaturase/short chain dehydrogenase; Validated
Probab=71.28 E-value=6.5 Score=42.53 Aligned_cols=35 Identities=31% Similarity=0.491 Sum_probs=31.1
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.+++||+|+|.|. |-+|+.+|+.|.+.|++|++++
T Consensus 174 ~sl~gK~VLITGASgGIG~aLA~~La~~G~~Vi~l~ 209 (406)
T PRK07424 174 LSLKGKTVAVTGASGTLGQALLKELHQQGAKVVALT 209 (406)
T ss_pred cCCCCCEEEEeCCCCHHHHHHHHHHHHCCCEEEEEe
Confidence 3578999999996 8999999999999999998664
No 484
>PRK09853 putative selenate reductase subunit YgfK; Provisional
Probab=71.23 E-value=4.9 Score=48.42 Aligned_cols=34 Identities=18% Similarity=0.098 Sum_probs=30.4
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|++|+|+|.|..|..+|..|.+.|.+|+ |-|.
T Consensus 537 ~tgKkVaIIGgGPAGLsAA~~Lar~G~~Vt-V~Ek 570 (1019)
T PRK09853 537 GSRKKVAVIGAGPAGLAAAYFLARAGHPVT-VFER 570 (1019)
T ss_pred CCCCcEEEECCCHHHHHHHHHHHHcCCeEE-EEec
Confidence 468999999999999999999999999876 6664
No 485
>PRK06139 short chain dehydrogenase; Provisional
Probab=71.22 E-value=6.9 Score=40.53 Aligned_cols=35 Identities=26% Similarity=0.303 Sum_probs=30.6
Q ss_pred CCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEe
Q 010384 412 KELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 412 ~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVS 446 (512)
.++++++|+|.|. |-+|..+|+.|++.|++|+.++
T Consensus 3 ~~l~~k~vlITGAs~GIG~aia~~la~~G~~Vvl~~ 38 (330)
T PRK06139 3 GPLHGAVVVITGASSGIGQATAEAFARRGARLVLAA 38 (330)
T ss_pred cCCCCCEEEEcCCCCHHHHHHHHHHHHCCCEEEEEE
Confidence 3578899999997 8999999999999999988553
No 486
>COG0654 UbiH 2-polyprenyl-6-methoxyphenol hydroxylase and related FAD-dependent oxidoreductases [Coenzyme metabolism / Energy production and conversion]
Probab=71.21 E-value=6.2 Score=41.33 Aligned_cols=32 Identities=16% Similarity=0.213 Sum_probs=29.2
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..|+|+|.|.||..+|-.|.+.|.+|+ |-|..
T Consensus 3 ~dV~IvGaG~aGl~lA~~L~~~G~~V~-l~E~~ 34 (387)
T COG0654 3 LDVAIVGAGPAGLALALALARAGLDVT-LLERA 34 (387)
T ss_pred CCEEEECCCHHHHHHHHHHHhCCCcEE-EEccC
Confidence 579999999999999999999999885 88876
No 487
>TIGR03649 ergot_EASG ergot alkaloid biosynthesis protein, AFUA_2G17970 family. This family consists of fungal proteins of unknown function associated with secondary metabolite biosynthesis, such as of the ergot alkaloids such as ergovaline. Nomenclature differs because gene order differs - this is EasG in Neotyphodium lolii but is designated ergot alkaloid biosynthetic protein A in several other fungi.
Probab=71.15 E-value=4.7 Score=39.74 Aligned_cols=30 Identities=23% Similarity=0.235 Sum_probs=25.9
Q ss_pred EEEEecc-cHHHHHHHHHHHHCCCEEEEEeC
Q 010384 418 RCVVSGS-GKIAMHVLEKLIAYGAIPVSVSD 447 (512)
Q Consensus 418 rVaIQGf-GNVG~~aAe~L~e~GakVVaVSD 447 (512)
+|+|.|. |+||+++++.|.+.|..|.+++-
T Consensus 1 ~ilVtGatG~iG~~vv~~L~~~g~~V~~~~R 31 (285)
T TIGR03649 1 TILLTGGTGKTASRIARLLQAASVPFLVASR 31 (285)
T ss_pred CEEEEcCCChHHHHHHHHHHhCCCcEEEEeC
Confidence 4677776 99999999999999999887764
No 488
>cd08243 quinone_oxidoreductase_like_1 Quinone oxidoreductase (QOR). NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. The medium chain alcohol dehydrogenase family (MDR) have a NAD(P)(H)-binding domain in a Rossmann fold of a beta-alpha form. The N-terminal region typically has an all-beta catalytic domain. These proteins typically form dimers (typically higher plants, mammals) or tetramers (yeast, bacteria), and have 2 tightly bound zinc atoms per subunit.
Probab=71.11 E-value=14 Score=35.99 Aligned_cols=39 Identities=15% Similarity=0.177 Sum_probs=32.6
Q ss_pred cCCCCCCcEEEEecc-cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 410 MNKELKGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 410 lg~~L~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
...--.|.+|+|.|. |.+|+.+++.+...|++|++++++
T Consensus 137 ~~~~~~g~~vlV~ga~g~~g~~~~~~a~~~g~~v~~~~~~ 176 (320)
T cd08243 137 SLGLQPGDTLLIRGGTSSVGLAALKLAKALGATVTATTRS 176 (320)
T ss_pred hcCCCCCCEEEEEcCCChHHHHHHHHHHHcCCEEEEEeCC
Confidence 333346899999996 999999999999999999887754
No 489
>KOG0089 consensus Methylenetetrahydrofolate dehydrogenase/methylenetetrahydrofolate cyclohydrolase [Coenzyme transport and metabolism]
Probab=71.10 E-value=5 Score=41.86 Aligned_cols=57 Identities=32% Similarity=0.251 Sum_probs=47.4
Q ss_pred CCchhHHHHHHHHHHHHcCCCCCCcEEEEec-ccHHHHHHHHHHHHCCCEEEEEeCCCceee
Q 010384 393 EATGYGLVFFAQLILADMNKELKGLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVSDAKGYLV 453 (512)
Q Consensus 393 eATG~GV~~~i~eal~~lg~~L~GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVSDs~G~Iy 453 (512)
.+|-.|| -++|++++..+.||+++|.| +=+||.-+|-+|+..|+++-.+-|.+=++.
T Consensus 147 PcTP~gv----~eiL~r~gI~~~GKn~VVigRS~iVg~P~A~LL~~dG~~~~~~~datVti~ 204 (309)
T KOG0089|consen 147 PCTPLGV----VEILERTGIETYGKNAVVIGRSKIVGMPLALLLHNDGAHVYSVDDATVTIF 204 (309)
T ss_pred CCchHHH----HHHHHHhCCeecCceEEEEcccccccchHHHHHhhcCCcccccCcceEEEE
Confidence 5788886 46778889999999999999 689999999999999988776666655443
No 490
>PRK08293 3-hydroxybutyryl-CoA dehydrogenase; Validated
Probab=71.08 E-value=6 Score=39.98 Aligned_cols=31 Identities=16% Similarity=0.164 Sum_probs=27.2
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|+|.|.|.+|...|..|++.|..|+ +.|.
T Consensus 4 ~kIaViGaG~mG~~iA~~la~~G~~V~-l~d~ 34 (287)
T PRK08293 4 KNVTVAGAGVLGSQIAFQTAFHGFDVT-IYDI 34 (287)
T ss_pred cEEEEECCCHHHHHHHHHHHhcCCeEE-EEeC
Confidence 589999999999999999999999876 5554
No 491
>PTZ00353 glycosomal glyceraldehyde-3-phosphate dehydrogenase; Provisional
Probab=71.07 E-value=10 Score=40.54 Aligned_cols=52 Identities=19% Similarity=0.215 Sum_probs=41.3
Q ss_pred cEEEEecccHHHHHHHHHHHHC-CCEEEEEeCCCceeeCCCCCCHhhHHHHHHHHHhcCcc
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAY-GAIPVSVSDAKGYLVDEDGFDYMKISFLRDIKSQQRSL 476 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~-GakVVaVSDs~G~Iydp~GLDie~L~~L~e~K~~~G~l 476 (512)
.||+|=|||-+|+.+.+.+.+. +..||+|-|.. .|++.+..|+++-..+|.+
T Consensus 3 ~kv~INGfGRIGR~v~R~~~~~~~~~ivaiNd~~--------~~~~~~ayll~yDS~hG~~ 55 (342)
T PTZ00353 3 ITVGINGFGPVGKAVLFASLTDPLVTVVAVNDAS--------VSIAYIAYVLEQESPLSAP 55 (342)
T ss_pred eEEEEECCChHHHHHHHHHHhcCCcEEEEecCCC--------CCHHHHHHHhhhhccCCCC
Confidence 5899999999999999997754 68999998741 3677777788876666655
No 492
>PRK08849 2-octaprenyl-3-methyl-6-methoxy-1,4-benzoquinol hydroxylase; Provisional
Probab=70.95 E-value=6 Score=41.17 Aligned_cols=32 Identities=16% Similarity=0.165 Sum_probs=28.5
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..|+|+|.|.+|..+|-.|.+.|.+|+ |-|..
T Consensus 4 ~dv~IvGgG~aGl~~A~~L~~~G~~v~-l~E~~ 35 (384)
T PRK08849 4 YDIAVVGGGMVGAATALGFAKQGRSVA-VIEGG 35 (384)
T ss_pred ccEEEECcCHHHHHHHHHHHhCCCcEE-EEcCC
Confidence 469999999999999999999999986 77753
No 493
>cd08298 CAD2 Cinnamyl alcohol dehydrogenases (CAD). These alcohol dehydrogenases are related to the cinnamyl alcohol dehydrogenases (CAD), members of the medium chain dehydrogenase/reductase family. NAD(P)(H)-dependent oxidoreductases are the major enzymes in the interconversion of alcohols and aldehydes, or ketones. Cinnamyl alcohol dehydrogenases (CAD) reduce cinnamaldehydes to cinnamyl alcohols in the last step of monolignal metabolism in plant cells walls. CAD binds 2 zinc ions and is NADPH- dependent. CAD family members are also found in non-plant species, e.g. in yeast where they have an aldehyde reductase activity. The medium chain dehydrogenases/reductase (MDR)/zinc-dependent alcohol dehydrogenase-like family, which contains the zinc-dependent alcohol dehydrogenase (ADH-Zn) and related proteins, is a diverse group of proteins related to the first identified member, class I mammalian ADH. MDRs display a broad range of activities and are distinguished from the smaller short cha
Probab=70.91 E-value=12 Score=37.35 Aligned_cols=37 Identities=22% Similarity=0.091 Sum_probs=31.8
Q ss_pred CCCCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.-..|.+|+|.|.|.||+.+++.+...|++|++++++
T Consensus 164 ~~~~~~~vlV~g~g~vg~~~~~la~~~g~~v~~~~~~ 200 (329)
T cd08298 164 GLKPGQRLGLYGFGASAHLALQIARYQGAEVFAFTRS 200 (329)
T ss_pred CCCCCCEEEEECCcHHHHHHHHHHHHCCCeEEEEcCC
Confidence 3346789999999999999999999999999877654
No 494
>PLN02989 cinnamyl-alcohol dehydrogenase family protein
Probab=70.90 E-value=6.9 Score=39.29 Aligned_cols=31 Identities=26% Similarity=0.319 Sum_probs=27.6
Q ss_pred CCcEEEEecc-cHHHHHHHHHHHHCCCEEEEE
Q 010384 415 KGLRCVVSGS-GKIAMHVLEKLIAYGAIPVSV 445 (512)
Q Consensus 415 ~GkrVaIQGf-GNVG~~aAe~L~e~GakVVaV 445 (512)
.|++|+|.|. |-+|+++++.|.+.|++|+++
T Consensus 4 ~~k~vlVtG~~G~IG~~l~~~L~~~G~~V~~~ 35 (325)
T PLN02989 4 GGKVVCVTGASGYIASWIVKLLLFRGYTINAT 35 (325)
T ss_pred CCCEEEEECCchHHHHHHHHHHHHCCCEEEEE
Confidence 4789999995 999999999999999998754
No 495
>TIGR01316 gltA glutamate synthase (NADPH), homotetrameric. This protein is homologous to the small subunit of NADPH and NADH forms of glutamate synthase as found in eukaryotes and some bacteria. This protein is found in numerous species having no homolog of the glutamate synthase large subunit. The prototype of the family, from Pyrococcus sp. KOD1, was shown to be active as a homotetramer and to require NADPH.
Probab=70.83 E-value=5.7 Score=42.84 Aligned_cols=34 Identities=21% Similarity=0.227 Sum_probs=30.0
Q ss_pred CCCcEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 414 LKGLRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 414 L~GkrVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..+++|+|+|.|..|..+|..|.+.|.+|+ |.|.
T Consensus 131 ~~~~~V~IIG~G~aGl~aA~~l~~~G~~V~-vie~ 164 (449)
T TIGR01316 131 STHKKVAVIGAGPAGLACASELAKAGHSVT-VFEA 164 (449)
T ss_pred CCCCEEEEECcCHHHHHHHHHHHHCCCcEE-EEec
Confidence 457899999999999999999999999976 6664
No 496
>TIGR00521 coaBC_dfp phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase, prokaryotic. This model represents a bifunctional enzyme that catalyzes the second and third steps (cysteine ligation, EC 6.3.2.5, and decarboxylation, EC 4.1.1.36) in the biosynthesis of coenzyme A (CoA) from pantothenate in bacteria. In early descriptions of this flavoprotein, a ts mutation in one region of the protein appeared to cause a defect in DNA metaobolism rather than an increased need for the pantothenate precursor beta-alanine. This protein was then called dfp, for DNA/pantothenate metabolism flavoprotein. The authors responsible for detecting phosphopantothenate--cysteine ligase activity suggest renaming this bifunctional protein coaBC for its role in CoA biosynthesis. This enzyme contains the FMN cofactor, but no FAD or pyruvoyl group. The amino-terminal region contains the phosphopantothenoylcysteine decarboxylase activity.
Probab=70.77 E-value=10 Score=40.90 Aligned_cols=37 Identities=22% Similarity=0.419 Sum_probs=32.5
Q ss_pred CCCCCcEEEEecc-----------------cHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 412 KELKGLRCVVSGS-----------------GKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 412 ~~L~GkrVaIQGf-----------------GNVG~~aAe~L~e~GakVVaVSDs 448 (512)
.+++|++|+|.|- |..|..+|+.|.+.|+.|+.|+..
T Consensus 181 ~~~~~~~vlit~g~t~E~iD~VR~itN~SSG~~g~~~a~~~~~~Ga~V~~~~g~ 234 (390)
T TIGR00521 181 EDLEGKRVLITAGPTREPIDPVRFISNLSSGKMGLALAEAAYKRGADVTLITGP 234 (390)
T ss_pred cccCCceEEEecCCccCCCCceeeecCCCcchHHHHHHHHHHHCCCEEEEeCCC
Confidence 4699999999987 579999999999999999977744
No 497
>PRK07494 2-octaprenyl-6-methoxyphenyl hydroxylase; Provisional
Probab=70.76 E-value=5.8 Score=40.95 Aligned_cols=32 Identities=19% Similarity=0.183 Sum_probs=28.5
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDAK 449 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs~ 449 (512)
..|+|+|.|.+|..+|-.|.+.|.+|+ |-|..
T Consensus 8 ~dViIVGaG~~Gl~~A~~L~~~G~~v~-liE~~ 39 (388)
T PRK07494 8 TDIAVIGGGPAGLAAAIALARAGASVA-LVAPE 39 (388)
T ss_pred CCEEEECcCHHHHHHHHHHhcCCCeEE-EEeCC
Confidence 469999999999999999999999975 77764
No 498
>PRK08643 acetoin reductase; Validated
Probab=70.64 E-value=7.3 Score=37.45 Aligned_cols=31 Identities=19% Similarity=0.285 Sum_probs=26.3
Q ss_pred CcEEEEec-ccHHHHHHHHHHHHCCCEEEEEe
Q 010384 416 GLRCVVSG-SGKIAMHVLEKLIAYGAIPVSVS 446 (512)
Q Consensus 416 GkrVaIQG-fGNVG~~aAe~L~e~GakVVaVS 446 (512)
+|+++|.| .|.+|.++|+.|++.|++|+.++
T Consensus 2 ~k~~lItGas~giG~~la~~l~~~G~~v~~~~ 33 (256)
T PRK08643 2 SKVALVTGAGQGIGFAIAKRLVEDGFKVAIVD 33 (256)
T ss_pred CCEEEEECCCChHHHHHHHHHHHCCCEEEEEe
Confidence 67888887 48899999999999999987553
No 499
>TIGR00872 gnd_rel 6-phosphogluconate dehydrogenase (decarboxylating). This family resembles a larger family (gnd) of bacterial and eukaryotic 6-phosphogluconate dehydrogenases but differs from it by a deep split in a UPGMA similarity clustering tree and the lack of a central region of about 140 residues. Among complete genomes, it is found is found in Bacillus subtilis and Mycobacterium tuberculosis, both of which also contain gnd, and in Aquifex aeolicus. The protein from Methylobacillus flagellatus KT has been characterized as a decarboxylating 6-phosphogluconate dehydrogenase as part of an unusual formaldehyde oxidation cycle. In some sequenced organisms members of this family are the sole 6-phosphogluconate dehydrogenase present and are probably active in the pentose phosphate cycle.
Probab=70.60 E-value=6.1 Score=40.31 Aligned_cols=31 Identities=19% Similarity=0.290 Sum_probs=27.5
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
++|.|.|+|+.|...|+.|.+.|..|+ +.|.
T Consensus 1 M~Ig~IGlG~mG~~la~~L~~~g~~V~-~~dr 31 (298)
T TIGR00872 1 MQLGLIGLGRMGANIVRRLAKRGHDCV-GYDH 31 (298)
T ss_pred CEEEEEcchHHHHHHHHHHHHCCCEEE-EEEC
Confidence 379999999999999999999999886 5666
No 500
>PRK03659 glutathione-regulated potassium-efflux system protein KefB; Provisional
Probab=70.60 E-value=6.2 Score=44.54 Aligned_cols=31 Identities=16% Similarity=0.186 Sum_probs=27.9
Q ss_pred cEEEEecccHHHHHHHHHHHHCCCEEEEEeCC
Q 010384 417 LRCVVSGSGKIAMHVLEKLIAYGAIPVSVSDA 448 (512)
Q Consensus 417 krVaIQGfGNVG~~aAe~L~e~GakVVaVSDs 448 (512)
..|+|.|+|.+|+.+++.|.+.|..++ +.|.
T Consensus 401 ~~vII~G~Gr~G~~va~~L~~~g~~vv-vID~ 431 (601)
T PRK03659 401 PQVIIVGFGRFGQVIGRLLMANKMRIT-VLER 431 (601)
T ss_pred CCEEEecCchHHHHHHHHHHhCCCCEE-EEEC
Confidence 579999999999999999999999887 5566
Done!