Query 010385
Match_columns 512
No_of_seqs 439 out of 2537
Neff 7.6
Searched_HMMs 46136
Date Thu Mar 28 23:55:04 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010385.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010385hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 COG5243 HRD1 HRD ubiquitin lig 100.0 1.4E-53 3.1E-58 415.8 30.9 331 2-338 1-349 (491)
2 KOG0802 E3 ubiquitin ligase [P 100.0 1.9E-36 4.1E-41 329.0 29.0 330 7-336 2-343 (543)
3 KOG4628 Predicted E3 ubiquitin 99.4 1.5E-12 3.3E-17 131.1 11.7 74 264-337 202-281 (348)
4 PF13639 zf-RING_2: Ring finge 99.2 2.4E-12 5.1E-17 92.2 1.3 41 290-330 1-44 (44)
5 KOG0823 Predicted E3 ubiquitin 99.1 3.2E-11 7E-16 113.7 4.6 58 286-343 44-104 (230)
6 KOG0317 Predicted E3 ubiquitin 99.1 3.4E-11 7.5E-16 116.6 3.1 56 282-337 232-287 (293)
7 PLN03208 E3 ubiquitin-protein 99.1 1.1E-10 2.3E-15 108.4 5.8 51 288-338 17-83 (193)
8 PHA02929 N1R/p28-like protein; 99.1 8.2E-11 1.8E-15 113.7 4.1 48 287-334 172-227 (238)
9 PF12678 zf-rbx1: RING-H2 zinc 99.0 9.6E-11 2.1E-15 93.3 2.9 44 287-330 17-73 (73)
10 PF13920 zf-C3HC4_3: Zinc fing 98.9 7E-10 1.5E-14 81.6 2.3 46 289-334 2-48 (50)
11 PF13923 zf-C3HC4_2: Zinc fing 98.9 1E-09 2.2E-14 76.3 2.0 38 292-329 1-39 (39)
12 COG5540 RING-finger-containing 98.8 2E-09 4.4E-14 104.4 3.4 48 288-335 322-373 (374)
13 PF15227 zf-C3HC4_4: zinc fing 98.8 1.9E-09 4.1E-14 76.1 2.2 38 292-329 1-42 (42)
14 smart00504 Ubox Modified RING 98.8 5.9E-09 1.3E-13 80.4 3.7 46 290-335 2-47 (63)
15 cd00162 RING RING-finger (Real 98.8 6.5E-09 1.4E-13 73.7 3.4 43 291-333 1-45 (45)
16 KOG0320 Predicted E3 ubiquitin 98.7 7.7E-09 1.7E-13 93.6 2.6 50 287-336 129-180 (187)
17 KOG0828 Predicted E3 ubiquitin 98.7 6.2E-08 1.3E-12 99.7 9.4 49 287-335 569-635 (636)
18 KOG1734 Predicted RING-contain 98.7 1.1E-06 2.3E-11 84.5 17.1 49 287-335 222-282 (328)
19 KOG1785 Tyrosine kinase negati 98.7 8.1E-08 1.8E-12 96.4 9.4 56 290-345 370-427 (563)
20 PF12861 zf-Apc11: Anaphase-pr 98.7 1.2E-08 2.7E-13 82.1 2.5 47 288-334 20-82 (85)
21 PF00097 zf-C3HC4: Zinc finger 98.6 2E-08 4.2E-13 70.6 2.0 38 292-329 1-41 (41)
22 PHA02926 zinc finger-like prot 98.6 2.9E-08 6.3E-13 93.1 2.7 48 287-334 168-230 (242)
23 smart00184 RING Ring finger. E 98.5 5.5E-08 1.2E-12 66.5 2.8 38 292-329 1-39 (39)
24 TIGR00599 rad18 DNA repair pro 98.5 5.3E-08 1.2E-12 100.9 3.7 49 287-335 24-72 (397)
25 COG5574 PEX10 RING-finger-cont 98.5 3.4E-08 7.4E-13 94.9 2.0 50 288-337 214-265 (271)
26 PF13705 TRC8_N: TRC8 N-termin 98.4 2.1E-06 4.5E-11 90.7 12.9 177 43-228 279-468 (508)
27 PF14634 zf-RING_5: zinc-RING 98.4 1.8E-07 3.8E-12 66.9 2.4 41 291-331 1-44 (44)
28 KOG0804 Cytoplasmic Zn-finger 98.4 2.3E-07 5.1E-12 94.9 3.4 44 289-334 175-222 (493)
29 KOG0287 Postreplication repair 98.3 1.4E-07 2.9E-12 93.1 0.9 49 289-337 23-71 (442)
30 PF13445 zf-RING_UBOX: RING-ty 98.3 1.8E-07 4E-12 66.1 1.3 35 292-327 1-43 (43)
31 PF04564 U-box: U-box domain; 98.3 2.4E-07 5.1E-12 73.8 1.8 48 288-335 3-51 (73)
32 COG5432 RAD18 RING-finger-cont 98.2 3.8E-07 8.2E-12 88.3 1.9 47 289-335 25-71 (391)
33 KOG2164 Predicted E3 ubiquitin 98.2 5E-07 1.1E-11 94.3 2.2 55 289-343 186-245 (513)
34 COG5194 APC11 Component of SCF 98.2 1E-06 2.2E-11 69.1 2.3 47 289-335 20-82 (88)
35 KOG1493 Anaphase-promoting com 98.1 5.8E-07 1.2E-11 69.8 0.7 47 288-334 19-81 (84)
36 KOG4265 Predicted E3 ubiquitin 98.0 3E-06 6.6E-11 85.2 3.3 49 287-335 288-337 (349)
37 COG5219 Uncharacterized conser 98.0 1.9E-06 4.1E-11 94.7 1.0 48 287-334 1467-1523(1525)
38 KOG2930 SCF ubiquitin ligase, 98.0 2.6E-06 5.6E-11 70.1 1.2 46 289-334 46-108 (114)
39 PF11793 FANCL_C: FANCL C-term 97.9 2.9E-06 6.2E-11 66.9 0.5 46 289-334 2-66 (70)
40 KOG2177 Predicted E3 ubiquitin 97.8 6.6E-06 1.4E-10 82.5 1.6 45 287-331 11-55 (386)
41 KOG4172 Predicted E3 ubiquitin 97.8 5.3E-06 1.2E-10 60.2 0.1 48 287-334 5-54 (62)
42 KOG0824 Predicted E3 ubiquitin 97.8 1E-05 2.3E-10 79.2 1.8 48 289-336 7-55 (324)
43 smart00744 RINGv The RING-vari 97.7 1.6E-05 3.4E-10 58.1 2.1 40 291-330 1-49 (49)
44 TIGR00570 cdk7 CDK-activating 97.7 2.5E-05 5.3E-10 78.2 3.5 49 289-337 3-57 (309)
45 PF14835 zf-RING_6: zf-RING of 97.6 2E-05 4.2E-10 59.9 1.3 46 289-336 7-53 (65)
46 KOG4159 Predicted E3 ubiquitin 97.4 6.4E-05 1.4E-09 78.3 2.3 49 287-335 82-130 (398)
47 KOG0827 Predicted E3 ubiquitin 97.4 5.2E-05 1.1E-09 76.6 1.5 44 290-333 5-55 (465)
48 KOG0978 E3 ubiquitin ligase in 97.4 4.5E-05 9.7E-10 83.7 1.0 49 288-336 642-691 (698)
49 KOG2879 Predicted E3 ubiquitin 97.4 0.00053 1.1E-08 66.7 7.7 51 284-334 234-287 (298)
50 KOG0311 Predicted E3 ubiquitin 97.4 3E-05 6.5E-10 77.6 -0.8 50 288-337 42-93 (381)
51 KOG1039 Predicted E3 ubiquitin 97.2 0.00014 3.1E-09 74.3 2.2 47 287-333 159-220 (344)
52 KOG1645 RING-finger-containing 97.2 0.0002 4.3E-09 73.0 2.8 45 289-333 4-55 (463)
53 COG5222 Uncharacterized conser 97.0 0.00037 8.1E-09 68.1 2.9 43 289-331 274-318 (427)
54 KOG1941 Acetylcholine receptor 97.0 0.0012 2.5E-08 67.0 6.0 46 288-333 364-415 (518)
55 KOG2114 Vacuolar assembly/sort 97.0 0.00067 1.4E-08 75.0 4.5 67 264-333 815-882 (933)
56 COG5152 Uncharacterized conser 97.0 0.00029 6.2E-09 65.0 1.3 47 288-334 195-241 (259)
57 KOG0297 TNF receptor-associate 96.9 0.0005 1.1E-08 72.4 2.3 53 287-339 19-72 (391)
58 KOG1002 Nucleotide excision re 96.8 0.0015 3.2E-08 68.6 5.0 48 288-335 535-587 (791)
59 KOG1813 Predicted E3 ubiquitin 96.7 0.00052 1.1E-08 67.4 1.1 48 288-335 240-287 (313)
60 KOG3970 Predicted E3 ubiquitin 96.7 0.0024 5.2E-08 60.2 5.3 54 289-342 50-113 (299)
61 KOG4692 Predicted E3 ubiquitin 96.7 0.0018 3.9E-08 64.9 4.2 49 287-335 420-468 (489)
62 PF11789 zf-Nse: Zinc-finger o 96.5 0.00098 2.1E-08 50.3 1.1 41 288-328 10-53 (57)
63 KOG0825 PHD Zn-finger protein 96.5 0.00053 1.2E-08 74.8 -0.4 31 304-334 141-171 (1134)
64 KOG1571 Predicted E3 ubiquitin 96.5 0.0036 7.8E-08 63.4 5.1 45 287-334 303-347 (355)
65 KOG4275 Predicted E3 ubiquitin 96.4 0.00063 1.4E-08 66.5 -0.6 42 289-334 300-342 (350)
66 KOG2660 Locus-specific chromos 96.2 0.0014 3E-08 65.6 0.2 47 289-335 15-62 (331)
67 PHA02825 LAP/PHD finger-like p 96.0 0.0053 1.2E-07 55.3 3.0 49 286-335 5-60 (162)
68 PF14447 Prok-RING_4: Prokaryo 95.9 0.005 1.1E-07 45.5 1.8 45 289-335 7-51 (55)
69 PHA02862 5L protein; Provision 95.7 0.0055 1.2E-07 54.2 2.0 45 289-334 2-53 (156)
70 KOG2932 E3 ubiquitin ligase in 95.7 0.087 1.9E-06 52.3 10.1 43 290-334 91-134 (389)
71 COG5236 Uncharacterized conser 95.6 0.0089 1.9E-07 59.9 2.9 56 279-334 51-108 (493)
72 KOG1428 Inhibitor of type V ad 95.4 0.0086 1.9E-07 69.2 2.4 48 287-334 3484-3544(3738)
73 KOG0826 Predicted E3 ubiquitin 95.3 1.2 2.7E-05 44.9 16.9 48 286-333 297-345 (357)
74 PF10367 Vps39_2: Vacuolar sor 95.2 0.033 7.1E-07 47.2 5.0 31 287-317 76-108 (109)
75 PF12906 RINGv: RING-variant d 94.8 0.016 3.5E-07 41.9 1.7 38 292-329 1-47 (47)
76 KOG1814 Predicted E3 ubiquitin 94.5 0.018 3.8E-07 59.3 1.7 47 286-332 181-238 (445)
77 KOG4445 Uncharacterized conser 94.5 0.01 2.2E-07 58.5 -0.1 50 289-338 115-190 (368)
78 KOG3039 Uncharacterized conser 94.0 0.037 8.1E-07 53.1 2.7 50 288-337 220-273 (303)
79 KOG3268 Predicted E3 ubiquitin 94.0 0.031 6.8E-07 51.0 2.1 46 290-335 166-229 (234)
80 PF14570 zf-RING_4: RING/Ubox 94.0 0.031 6.8E-07 40.3 1.6 42 292-333 1-47 (48)
81 PF10272 Tmpp129: Putative tra 93.2 0.13 2.8E-06 53.1 5.1 48 287-334 269-351 (358)
82 KOG0802 E3 ubiquitin ligase [P 93.0 0.066 1.4E-06 59.0 3.0 60 275-338 465-524 (543)
83 PF05290 Baculo_IE-1: Baculovi 93.0 0.22 4.7E-06 43.7 5.4 48 288-335 79-133 (140)
84 PHA03096 p28-like protein; Pro 93.0 0.044 9.6E-07 55.0 1.4 42 290-331 179-231 (284)
85 COG5175 MOT2 Transcriptional r 92.9 0.048 1E-06 54.6 1.5 47 288-334 13-64 (480)
86 KOG4185 Predicted E3 ubiquitin 92.7 0.067 1.5E-06 54.2 2.3 44 290-333 4-54 (296)
87 KOG4367 Predicted Zn-finger pr 92.6 0.33 7.1E-06 50.3 7.0 31 288-318 3-33 (699)
88 KOG4739 Uncharacterized protei 92.6 0.053 1.1E-06 52.4 1.2 44 291-336 5-50 (233)
89 KOG1001 Helicase-like transcri 92.5 0.042 9.1E-07 61.6 0.6 46 290-336 455-502 (674)
90 COG5183 SSM4 Protein involved 92.3 0.081 1.8E-06 58.6 2.4 48 287-334 10-66 (1175)
91 KOG1952 Transcription factor N 92.0 0.068 1.5E-06 59.7 1.4 47 287-333 189-246 (950)
92 PF07800 DUF1644: Protein of u 92.0 0.15 3.2E-06 46.1 3.3 33 289-321 2-47 (162)
93 PF08746 zf-RING-like: RING-li 91.8 0.14 3E-06 36.2 2.3 38 292-329 1-43 (43)
94 KOG1940 Zn-finger protein [Gen 91.0 0.12 2.5E-06 51.5 1.7 42 290-331 159-204 (276)
95 PF05883 Baculo_RING: Baculovi 90.9 0.11 2.5E-06 45.8 1.4 40 289-328 26-74 (134)
96 PF04641 Rtf2: Rtf2 RING-finge 90.8 0.23 4.9E-06 49.5 3.6 49 287-336 111-163 (260)
97 KOG0827 Predicted E3 ubiquitin 90.5 0.028 6E-07 57.4 -3.2 47 289-335 196-246 (465)
98 PF03854 zf-P11: P-11 zinc fin 90.0 0.12 2.5E-06 37.0 0.5 43 291-335 4-47 (50)
99 KOG2034 Vacuolar sorting prote 89.8 0.35 7.5E-06 54.7 4.3 34 287-320 815-850 (911)
100 KOG1100 Predicted E3 ubiquitin 89.3 0.17 3.6E-06 48.6 1.3 40 291-334 160-200 (207)
101 KOG0298 DEAD box-containing he 88.9 0.13 2.8E-06 60.1 0.2 45 289-333 1153-1198(1394)
102 KOG3053 Uncharacterized conser 86.6 0.27 5.8E-06 47.7 0.8 48 287-334 18-82 (293)
103 KOG2817 Predicted E3 ubiquitin 84.7 0.66 1.4E-05 48.0 2.6 45 287-331 332-382 (394)
104 KOG3161 Predicted E3 ubiquitin 84.6 0.35 7.7E-06 52.5 0.6 39 290-331 12-54 (861)
105 KOG3800 Predicted E3 ubiquitin 83.8 0.71 1.5E-05 45.8 2.2 43 291-333 2-50 (300)
106 KOG3002 Zn finger protein [Gen 83.5 0.72 1.6E-05 46.7 2.2 46 287-335 46-92 (299)
107 KOG0801 Predicted E3 ubiquitin 82.8 0.46 9.9E-06 43.0 0.5 29 285-313 173-204 (205)
108 KOG0309 Conserved WD40 repeat- 81.0 0.86 1.9E-05 50.6 1.8 24 305-328 1046-1069(1081)
109 PRK12495 hypothetical protein; 80.5 14 0.0003 35.5 9.5 14 322-335 57-70 (226)
110 KOG1609 Protein involved in mR 79.9 0.87 1.9E-05 46.3 1.4 46 289-334 78-134 (323)
111 KOG3899 Uncharacterized conser 79.2 0.85 1.9E-05 45.1 1.0 29 307-335 325-366 (381)
112 KOG0956 PHD finger protein AF1 79.0 11 0.00025 41.7 9.4 47 287-333 115-181 (900)
113 COG5220 TFB3 Cdk activating ki 78.0 1 2.2E-05 43.4 1.1 44 288-331 9-61 (314)
114 KOG0825 PHD Zn-finger protein 77.4 1.2 2.6E-05 49.6 1.6 47 288-334 95-154 (1134)
115 KOG4362 Transcriptional regula 76.0 0.75 1.6E-05 51.1 -0.5 47 289-335 21-70 (684)
116 KOG0269 WD40 repeat-containing 75.5 2.1 4.5E-05 47.8 2.7 38 291-328 781-820 (839)
117 PLN02400 cellulose synthase 72.0 25 0.00054 41.5 10.4 48 288-335 35-90 (1085)
118 KOG2068 MOT2 transcription fac 71.9 4.6 0.0001 41.0 4.0 45 290-334 250-298 (327)
119 KOG2302 T-type voltage-gated C 70.6 2.3E+02 0.005 33.6 17.4 20 193-212 1336-1355(1956)
120 PF02891 zf-MIZ: MIZ/SP-RING z 70.1 3.3 7.2E-05 30.2 1.9 42 290-332 3-50 (50)
121 KOG1829 Uncharacterized conser 66.0 2.1 4.6E-05 47.0 0.3 23 305-330 535-557 (580)
122 KOG2066 Vacuolar assembly/sort 65.9 7.4 0.00016 43.9 4.4 43 288-331 783-832 (846)
123 KOG3039 Uncharacterized conser 62.4 5 0.00011 39.0 2.0 34 288-321 42-75 (303)
124 KOG3579 Predicted E3 ubiquitin 61.7 5 0.00011 39.7 1.9 34 289-322 268-305 (352)
125 KOG1812 Predicted E3 ubiquitin 61.5 3.9 8.5E-05 43.1 1.3 35 288-322 145-183 (384)
126 KOG4718 Non-SMC (structural ma 61.1 4.1 8.8E-05 38.7 1.1 43 289-331 181-224 (235)
127 KOG0314 Predicted E3 ubiquitin 61.0 58 0.0013 34.9 9.7 34 287-320 217-253 (448)
128 KOG3113 Uncharacterized conser 56.9 10 0.00022 37.1 3.0 50 287-338 109-162 (293)
129 KOG3842 Adaptor protein Pellin 55.4 10 0.00022 38.1 2.9 48 287-334 339-414 (429)
130 KOG0824 Predicted E3 ubiquitin 53.3 14 0.00031 37.1 3.5 49 287-335 103-152 (324)
131 PF04216 FdhE: Protein involve 52.3 6.5 0.00014 39.7 1.0 46 287-332 170-220 (290)
132 PF13901 DUF4206: Domain of un 51.1 8.6 0.00019 36.8 1.6 39 288-331 151-197 (202)
133 PLN02189 cellulose synthase 49.0 19 0.00042 42.3 4.2 47 288-334 33-87 (1040)
134 COG5109 Uncharacterized conser 48.2 11 0.00024 38.0 1.8 42 288-329 335-382 (396)
135 PLN02436 cellulose synthase A 47.0 22 0.00047 42.0 4.2 47 288-334 35-89 (1094)
136 KOG1815 Predicted E3 ubiquitin 45.6 26 0.00057 37.7 4.4 36 287-322 68-104 (444)
137 KOG0971 Microtubule-associated 45.1 1.5E+02 0.0033 34.5 10.0 24 478-502 219-242 (1243)
138 PF04710 Pellino: Pellino; In 43.9 7.6 0.00017 40.4 0.0 27 304-333 306-338 (416)
139 PF04710 Pellino: Pellino; In 43.9 7.6 0.00017 40.4 0.0 46 289-334 328-401 (416)
140 smart00132 LIM Zinc-binding do 43.0 19 0.00042 23.6 1.9 35 291-333 1-37 (39)
141 KOG3005 GIY-YIG type nuclease 41.8 12 0.00025 37.1 0.9 45 289-333 182-242 (276)
142 PF00412 LIM: LIM domain; Int 39.5 17 0.00037 26.6 1.3 36 292-335 1-38 (58)
143 PLN02638 cellulose synthase A 39.3 32 0.00069 40.7 4.0 47 288-334 16-70 (1079)
144 PF07191 zinc-ribbons_6: zinc- 39.3 4.3 9.4E-05 31.8 -2.0 40 290-334 2-41 (70)
145 PLN03223 Polycystin cation cha 38.7 8.7E+02 0.019 30.2 24.0 49 9-57 1177-1231(1634)
146 COG1615 Uncharacterized conser 37.2 4.8E+02 0.011 29.9 12.3 14 61-74 167-180 (885)
147 PF06844 DUF1244: Protein of u 37.2 18 0.00038 28.0 1.0 13 310-322 11-23 (68)
148 KOG1812 Predicted E3 ubiquitin 36.3 18 0.0004 38.1 1.5 43 288-330 305-352 (384)
149 PF06906 DUF1272: Protein of u 35.5 47 0.001 24.9 3.0 43 291-335 7-53 (57)
150 PRK03564 formate dehydrogenase 33.4 28 0.0006 35.6 2.1 45 287-331 185-234 (309)
151 KOG4185 Predicted E3 ubiquitin 33.1 8.1 0.00018 39.0 -1.8 46 288-333 206-266 (296)
152 PF14569 zf-UDP: Zinc-binding 32.7 54 0.0012 26.2 3.2 48 288-335 8-63 (80)
153 PF14446 Prok-RING_1: Prokaryo 32.6 42 0.00091 25.0 2.4 36 289-328 5-44 (54)
154 TIGR01562 FdhE formate dehydro 31.7 28 0.0006 35.5 1.8 44 288-331 183-232 (305)
155 PF09726 Macoilin: Transmembra 31.5 1.3E+02 0.0028 34.4 7.2 113 66-194 7-133 (697)
156 PF02318 FYVE_2: FYVE-type zin 31.4 24 0.00052 30.5 1.2 30 288-317 53-87 (118)
157 KOG2302 T-type voltage-gated C 31.1 1E+03 0.022 28.7 14.4 19 174-192 1265-1283(1956)
158 PF10497 zf-4CXXC_R1: Zinc-fin 29.8 50 0.0011 28.1 2.8 43 289-331 7-69 (105)
159 KOG1818 Membrane trafficking a 27.6 69 0.0015 35.8 4.0 31 289-319 165-199 (634)
160 cd00350 rubredoxin_like Rubred 27.1 40 0.00086 22.1 1.3 11 322-332 16-26 (33)
161 PF01363 FYVE: FYVE zinc finge 26.7 25 0.00054 27.0 0.4 33 288-320 8-44 (69)
162 KOG4193 G protein-coupled rece 26.3 9.8E+02 0.021 27.0 18.0 72 50-122 331-407 (610)
163 PLN02915 cellulose synthase A 25.7 73 0.0016 37.7 4.0 47 288-334 14-68 (1044)
164 KOG2113 Predicted RNA binding 25.6 50 0.0011 33.5 2.3 43 289-333 343-386 (394)
165 smart00249 PHD PHD zinc finger 25.5 39 0.00084 23.0 1.2 28 291-318 1-31 (47)
166 KOG2041 WD40 repeat protein [G 25.3 86 0.0019 35.5 4.2 43 287-333 1129-1184(1189)
167 KOG2231 Predicted E3 ubiquitin 24.2 58 0.0013 36.7 2.7 44 291-334 2-52 (669)
168 KOG0162 Myosin class I heavy c 24.1 5E+02 0.011 29.8 9.6 12 248-259 701-712 (1106)
169 KOG2807 RNA polymerase II tran 24.0 89 0.0019 31.9 3.7 43 289-331 330-375 (378)
170 PRK04023 DNA polymerase II lar 23.7 55 0.0012 38.4 2.5 50 285-336 622-676 (1121)
171 PF07975 C1_4: TFIIH C1-like d 23.0 67 0.0014 23.6 2.0 24 306-330 26-50 (51)
172 KOG1924 RhoA GTPase effector D 22.8 3.6E+02 0.0078 31.1 8.3 79 401-479 515-598 (1102)
173 KOG0260 RNA polymerase II, lar 22.7 1.5E+03 0.032 27.8 13.7 22 288-309 1390-1411(1605)
174 KOG3799 Rab3 effector RIM1 and 22.6 1.4E+02 0.0031 26.4 4.2 20 287-310 63-83 (169)
175 KOG2113 Predicted RNA binding 22.1 37 0.0008 34.4 0.6 46 289-334 136-183 (394)
176 PF05539 Pneumo_att_G: Pneumov 21.8 8.8E+02 0.019 24.9 11.6 7 327-333 151-157 (408)
177 PF00628 PHD: PHD-finger; Int 21.5 44 0.00095 23.8 0.8 40 291-330 1-49 (51)
178 PF11023 DUF2614: Protein of u 21.0 40 0.00087 28.9 0.6 24 318-341 80-103 (114)
179 PF14311 DUF4379: Domain of un 20.2 58 0.0013 23.9 1.3 23 306-329 33-55 (55)
No 1
>COG5243 HRD1 HRD ubiquitin ligase complex, ER membrane component [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.4e-53 Score=415.83 Aligned_cols=331 Identities=32% Similarity=0.569 Sum_probs=281.7
Q ss_pred chhhHHHHHHHHHHHHHHHHHHhccCchHhhHHHhhc-CCchHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHh
Q 010385 2 MRLQTYAGFSFMATLAVVYHAFNSRRQFYPSMVYLST-SKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQ 80 (512)
Q Consensus 2 ~~~~~y~~~s~~~~~~~v~~~~~~~~~fy~~~v~l~~-s~~~~~il~N~~~~~~~~~~~~~~~~ffG~Lr~~E~e~l~e~ 80 (512)
||+.+|+..++++....+|-++++..+-|++.+..++ |+.++++..|++++++.++|+++++++||+||..|.||++|+
T Consensus 1 ~r~i~y~l~~~Vl~~l~~~~~~~~s~t~ys~l~~t~~ls~~hi~i~~~~ill~~~l~~~~l~~llFGsLr~~E~e~~~E~ 80 (491)
T COG5243 1 MRFILYVLASLVLFGLSVLLSLYSSATVYSALVMTSQLSPVHITIGLNVILLLFFLIANALKTLLFGSLRTFELELLYEQ 80 (491)
T ss_pred CceeehhHHHHHHHHHHHHHHHhccceeeeeeeeeeccCcchhHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHh
Confidence 6889999999999999999999999999999888887 889999999999999999999999999999999999999999
Q ss_pred hHHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCChhHH--HHHHHHHHHHHHHHHHHHHH
Q 010385 81 SRREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVEYIETTPTVPLLSH--IRIVSFMSFLLLVDSLFLYS 158 (512)
Q Consensus 81 ~~~~v~~~lf~~~if~~~~~~~~l~~~~~ll~lk~~h~l~~dR~e~l~~sp~~~~~~h--~R~~~~l~~ll~~d~~~~~~ 158 (512)
+|++++|++|++++|++++++.+..+++.|+++|+||||+++|+|-+. ..++....| .|+...+.+|.++|.-++|.
T Consensus 81 l~~tlt~~ll~iS~F~e~i~fs~~~l~~~Ll~~kvfhwil~~R~er~~-~~st~~~~~ifSrfS~~~~lL~ild~~li~~ 159 (491)
T COG5243 81 LWITLTEILLAISVFREAISFSFFMLLSTLLFAKVFHWILSFRTERLQ-IQSTDQRFHIFSRFSCAYFLLSILDASLIYL 159 (491)
T ss_pred hHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHhHHHHHH
Confidence 999999999999999999999999999999999999999999999542 224455555 47777788889999777776
Q ss_pred HHH--HHHhhcChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHH
Q 010385 159 SVK--FLLQTRQASVSLFFSFEYMILATTTVSIFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIF 236 (512)
Q Consensus 159 ~~~--~~~~~~~~~~~l~f~fE~~il~~~~~~~~~~y~~~~~d~~~~~~we~k~~~~~y~~l~~~~l~l~~~~~f~~vi~ 236 (512)
|+. +++ ..+...+|-+||..+....-+.-.|--++..|..++. ++|..+.||+|+..+-+.++.|.++++..+
T Consensus 160 CiSs~~li---D~~~lfL~~c~F~~~ll~l~s~~n~~cV~n~~~~ddD--d~rs~~~f~~~v~y~g~tllays~l~~~~~ 234 (491)
T COG5243 160 CISSEHLI---DKSTLFLFVCEFSVLLLNLTSEANKLCVYNYEARDDD--DERSTYLFRLEVCYDGLTLLAYSLLFMYQF 234 (491)
T ss_pred HhhhHhhh---hhhHHHHHHHHHHHHHHHHHHhhcccceeeccccccc--ccceeeeeeeehHHHHHHHHHHHHHHHhhc
Confidence 654 222 1222223444554433333222234445555555444 678889999999999999999999999999
Q ss_pred HhhhchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcCCCCCcccccCCCCccccccccc-cc------------Ce
Q 010385 237 MNYGVPLHLIRELYETFRNFRIRVADYVRYRKITSNMNDRFPDASPEELDASDSTCIICREEM-TT------------AK 303 (512)
Q Consensus 237 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~-~~------------~~ 303 (512)
..+.+|++++|+.|-.+..+.+|++.+.++++..|++++.++.++.|++.++|..|.||+|++ +. |+
T Consensus 235 ~~~r~Pi~l~r~~~t~~~AL~~~i~~~~~~~r~~kdl~~~~~t~t~eql~n~D~~C~ICmde~~h~~~~~~~~~~~~~pK 314 (491)
T COG5243 235 PYVRVPIYLIRQMYTCFYALFRRIREHARFRRATKDLNAMYPTATEEQLTNSDRTCTICMDEMFHPDHEPLPRGLDMTPK 314 (491)
T ss_pred cchhchHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHhhcchhhhhhhcCCCCeEEEecccccCCCCccCcccccCCcc
Confidence 999999999999999999999999999999999999999999999999999999999999994 33 48
Q ss_pred EeccCcccChhhHHHHHhcCCCCCCCCCccCCCCC
Q 010385 304 KLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (512)
Q Consensus 304 ~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~~ 338 (512)
+|||||++|.+|++.|++++++||+||.++.-++.
T Consensus 315 rLpCGHilHl~CLknW~ERqQTCPICr~p~ifd~~ 349 (491)
T COG5243 315 RLPCGHILHLHCLKNWLERQQTCPICRRPVIFDQS 349 (491)
T ss_pred cccccceeeHHHHHHHHHhccCCCcccCccccccC
Confidence 99999999999999999999999999999654433
No 2
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=1.9e-36 Score=328.95 Aligned_cols=330 Identities=30% Similarity=0.496 Sum_probs=290.8
Q ss_pred HHHHHHHHHHHHHHHHHhccCchHhhHHHhhcCCchHHHHHHHHHHHHHHHHHHHHHHhccCCcHHHHHHHHHhhH-HHH
Q 010385 7 YAGFSFMATLAVVYHAFNSRRQFYPSMVYLSTSKISLVLLMNMGLVIMCILWQLIKKVFLGSLREAEVERLNEQSR-REI 85 (512)
Q Consensus 7 y~~~s~~~~~~~v~~~~~~~~~fy~~~v~l~~s~~~~~il~N~~~~~~~~~~~~~~~~ffG~Lr~~E~e~l~e~~~-~~v 85 (512)
|.+.+.+++...++.++....|+|++.+++.+++.++.++.|++++....+++.++.+|||.|+..|.||+.|++| +.+
T Consensus 2 ~~~~~~~~~~~~~~~~~~~~~q~~~~~~~~~~~~~~~~~l~~~~l~~~~~~~~sl~~~~~g~l~~~~~e~~~~~l~~~~~ 81 (543)
T KOG0802|consen 2 YVRSSALATIKTIFSAYLGSAQSISTTVLLLSSPTSLAVLLNRALVVLALILLSLQLIFFGALLLSEAEHLSHSLWNLIG 81 (543)
T ss_pred cchhhHHHHHHHHHHHHHhhhcccccceeeecccHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 5677889999999999999999999999999999999999999999999999999999999999999999999999 666
Q ss_pred HHHHHhh--hhccccchhHHHHHHHHHHHHHHHHHHHhhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q 010385 86 MEILFAI--TIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVEYIETTPTVPLLSHIRIVSFMSFLLLVDSLFLYSSVKFL 163 (512)
Q Consensus 86 ~~~lf~~--~if~~~~~~~~l~~~~~ll~lk~~h~l~~dR~e~l~~sp~~~~~~h~R~~~~l~~ll~~d~~~~~~~~~~~ 163 (512)
.+..|.. +.|+..++..|..+++.++++|+|||++++|+++|+.+|....+.|.|+...+..+.+.|....+.++...
T Consensus 82 ~~~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~~~l~~~~~~~l~~~~~~~~~~~~~v~~~~~~l~~~~~~~~~~s~~~~ 161 (543)
T KOG0802|consen 82 LKYTFLLGYVTFRTVLSELFSLWLLLLLFLHVFHLLASDRLPRLFFSPLITTLNHFRVVSVLFALLIVDGHLVYNSLKTA 161 (543)
T ss_pred HHhhhhhccccccchhhHHHHHHHHHHHHHHHHHHHHHhHHHHHHhCcchhhhhhhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence 6766665 77787777667778889999999999999999999999999999999999998888898988888887777
Q ss_pred HhhcChhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhccccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHHHhhhchH
Q 010385 164 LQTRQASVSLFFSFEYMILATTTVSIFVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMYLCFFLVIFMNYGVPL 243 (512)
Q Consensus 164 ~~~~~~~~~l~f~fE~~il~~~~~~~~~~y~~~~~d~~~~~~we~k~~~~~y~~l~~~~l~l~~~~~f~~vi~~~~~~~~ 243 (512)
+++.+..+.+.+.+|.+++...+....++|+++..+-....+|+.+..+.++.+...+...+..+.+++.+.+..+++++
T Consensus 162 ~~t~~~~~l~~~~~~~~~~~~~~~~~~~~y~l~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~i~~~~~~~~~~~~~~ 241 (543)
T KOG0802|consen 162 YRTYGLSMLIELTFPSLLVVFWTALVILQYVLHSTADHIHIRSEDLSLLTFTLIIFGCMTLLVLLIMSAVISLVVHGILL 241 (543)
T ss_pred HHhhhhhheeccchHHHHHHHHHHHHHHHHHHhcchhhcCcccCccceeechhHHHhhhhHHHHHhhhHHHHHHHhHhhh
Confidence 76777777777899999988888888889999888523344678999999999988888888888888888888999999
Q ss_pred HHHHHHHHHH-HHHHHHHHHHHHHHHHHHh-hhhcCCCCCccc--ccCCCCccccccccccc-----CeEeccCcccChh
Q 010385 244 HLIRELYETF-RNFRIRVADYVRYRKITSN-MNDRFPDASPEE--LDASDSTCIICREEMTT-----AKKLICGHLFHVH 314 (512)
Q Consensus 244 ~~i~~~~~~~-~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~--~~~~~~~C~IC~~~~~~-----~~~l~C~H~fh~~ 314 (512)
++.+.++... ....++.....+.++.... +...++..+.++ ....++.|+||+|++.. ++++||||.||.+
T Consensus 242 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~e~l~~~~~~~~~rL~C~Hifh~~ 321 (543)
T KOG0802|consen 242 GLVADLYNTPFLEVERRLRELAPLRRVILATLQTGLPGATLEERGLALSDELCIICLEELHSGHNITPKRLPCGHIFHDS 321 (543)
T ss_pred hhhHHHhhhhhhhHHHHccchHHHHHHhhccccccccccChHHhhhhhcCCeeeeechhhccccccccceeecccchHHH
Confidence 9999998887 7777888888888877777 777788888777 66789999999999998 7999999999999
Q ss_pred hHHHHHhcCCCCCCCCCccCCC
Q 010385 315 CLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 315 Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
|+++|++++++||+||..+...
T Consensus 322 CL~~W~er~qtCP~CR~~~~~~ 343 (543)
T KOG0802|consen 322 CLRSWFERQQTCPTCRTVLYDY 343 (543)
T ss_pred HHHHHHHHhCcCCcchhhhhcc
Confidence 9999999999999999965443
No 3
>KOG4628 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.40 E-value=1.5e-12 Score=131.05 Aligned_cols=74 Identities=27% Similarity=0.666 Sum_probs=54.5
Q ss_pred HHHHHHHHhhhhcCCCCCcccccC--CCCcccccccccccCe---EeccCcccChhhHHHHHhcCC-CCCCCCCccCCCC
Q 010385 264 VRYRKITSNMNDRFPDASPEELDA--SDSTCIICREEMTTAK---KLICGHLFHVHCLRSWLERQH-TCPTCRALVVPPE 337 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~--~~~~C~IC~~~~~~~~---~l~C~H~fh~~Cl~~wl~~~~-~CP~Cr~~~~~~~ 337 (512)
.+.++..+++.+++|-.+..+.+. ..+.|+||+|+|+.+. .|||+|.||..||++||.+.. .||+||+++....
T Consensus 202 ~~~~r~~k~~l~~~p~~~f~~~~~~~~~~~CaIClEdY~~GdklRiLPC~H~FH~~CIDpWL~~~r~~CPvCK~di~~~~ 281 (348)
T KOG4628|consen 202 LRRNRLIKRLLKKLPVRTFTKGDDEDATDTCAICLEDYEKGDKLRILPCSHKFHVNCIDPWLTQTRTFCPVCKRDIRTDS 281 (348)
T ss_pred hhhhhhHHHHHhhCCcEEeccccccCCCceEEEeecccccCCeeeEecCCCchhhccchhhHhhcCccCCCCCCcCCCCC
Confidence 344555666666666655433322 2259999999999875 579999999999999998865 4999999876543
No 4
>PF13639 zf-RING_2: Ring finger domain; PDB: 2KIZ_A 4EPO_C 1IYM_A 2EP4_A 2ECT_A 2JRJ_A 2ECN_A 2ECM_A 3NG2_A 2EA6_A ....
Probab=99.23 E-value=2.4e-12 Score=92.21 Aligned_cols=41 Identities=49% Similarity=1.226 Sum_probs=35.6
Q ss_pred Cccccccccccc---CeEeccCcccChhhHHHHHhcCCCCCCCC
Q 010385 290 STCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCR 330 (512)
Q Consensus 290 ~~C~IC~~~~~~---~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr 330 (512)
++|+||++++.. ...++|||.||.+|+.+|++++.+||+||
T Consensus 1 d~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~~~~~~~~CP~CR 44 (44)
T PF13639_consen 1 DECPICLEEFEDGEKVVKLPCGHVFHRSCIKEWLKRNNSCPVCR 44 (44)
T ss_dssp -CETTTTCBHHTTSCEEEETTSEEEEHHHHHHHHHHSSB-TTTH
T ss_pred CCCcCCChhhcCCCeEEEccCCCeeCHHHHHHHHHhCCcCCccC
Confidence 479999999964 35789999999999999999999999997
No 5
>KOG0823 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=99.14 E-value=3.2e-11 Score=113.67 Aligned_cols=58 Identities=31% Similarity=0.607 Sum_probs=48.9
Q ss_pred cCCCCcccccccccccCeEeccCcccChhhHHHHHhc---CCCCCCCCCccCCCCCCCCCC
Q 010385 286 DASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER---QHTCPTCRALVVPPENGASTA 343 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~---~~~CP~Cr~~~~~~~~~~~~~ 343 (512)
+....+|.||+|.-++|+.+.|||.||+.||.+|+.. .+.||+||..+...+..+-..
T Consensus 44 ~~~~FdCNICLd~akdPVvTlCGHLFCWpClyqWl~~~~~~~~cPVCK~~Vs~~~vvPlYG 104 (230)
T KOG0823|consen 44 DGGFFDCNICLDLAKDPVVTLCGHLFCWPCLYQWLQTRPNSKECPVCKAEVSIDTVVPLYG 104 (230)
T ss_pred CCCceeeeeeccccCCCEEeecccceehHHHHHHHhhcCCCeeCCccccccccceEEeeec
Confidence 4567899999999999999999999999999999975 456999999997665444433
No 6
>KOG0317 consensus Predicted E3 ubiquitin ligase, integral peroxisomal membrane protein [Posttranslational modification, protein turnover, chaperones]
Probab=99.10 E-value=3.4e-11 Score=116.63 Aligned_cols=56 Identities=25% Similarity=0.712 Sum_probs=49.5
Q ss_pred cccccCCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCCCC
Q 010385 282 PEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (512)
Q Consensus 282 ~~~~~~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~ 337 (512)
...+.+.+..|.+|+|...+|..+||||+||+.||.+|...+..||+||....+.+
T Consensus 232 ~~~i~~a~~kC~LCLe~~~~pSaTpCGHiFCWsCI~~w~~ek~eCPlCR~~~~psk 287 (293)
T KOG0317|consen 232 LSSIPEATRKCSLCLENRSNPSATPCGHIFCWSCILEWCSEKAECPLCREKFQPSK 287 (293)
T ss_pred CccCCCCCCceEEEecCCCCCCcCcCcchHHHHHHHHHHccccCCCcccccCCCcc
Confidence 34455667899999999999999999999999999999999999999999886543
No 7
>PLN03208 E3 ubiquitin-protein ligase RMA2; Provisional
Probab=99.09 E-value=1.1e-10 Score=108.44 Aligned_cols=51 Identities=29% Similarity=0.729 Sum_probs=44.3
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhc----------------CCCCCCCCCccCCCCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER----------------QHTCPTCRALVVPPEN 338 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~----------------~~~CP~Cr~~~~~~~~ 338 (512)
++.+|+||++.+++|+.++|||.||+.||.+|+.. ...||+||.++.....
T Consensus 17 ~~~~CpICld~~~dPVvT~CGH~FC~~CI~~wl~~s~~s~~~~~~~~~~k~~~~CPvCR~~Is~~~L 83 (193)
T PLN03208 17 GDFDCNICLDQVRDPVVTLCGHLFCWPCIHKWTYASNNSRQRVDQYDHKREPPKCPVCKSDVSEATL 83 (193)
T ss_pred CccCCccCCCcCCCcEEcCCCchhHHHHHHHHHHhccccccccccccccCCCCcCCCCCCcCChhcE
Confidence 56899999999999999999999999999999852 3479999999975443
No 8
>PHA02929 N1R/p28-like protein; Provisional
Probab=99.07 E-value=8.2e-11 Score=113.74 Aligned_cols=48 Identities=31% Similarity=0.848 Sum_probs=41.3
Q ss_pred CCCCcccccccccccC--------eEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTA--------KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~--------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
..+.+|+||++.+.++ ..++|+|.||..||.+|+.++.+||+||.++.
T Consensus 172 ~~~~eC~ICle~~~~~~~~~~~~~vl~~C~H~FC~~CI~~Wl~~~~tCPlCR~~~~ 227 (238)
T PHA02929 172 SKDKECAICMEKVYDKEIKNMYFGILSNCNHVFCIECIDIWKKEKNTCPVCRTPFI 227 (238)
T ss_pred CCCCCCccCCcccccCccccccceecCCCCCcccHHHHHHHHhcCCCCCCCCCEee
Confidence 3467999999987653 34579999999999999999999999999874
No 9
>PF12678 zf-rbx1: RING-H2 zinc finger; InterPro: IPR024766 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This domain constitutes a conserved region found in proteins that participate in diverse functions relevant to chromosome metabolism and cell cycle control [].The domain contains 8 cysteine/ histidine residues which are proposed to be the conserved residues involved in zinc binding.; PDB: 4A0C_D 4A0L_I 4A0K_B 2ECL_A 1LDK_C 3RTR_F 3DQV_Y 1U6G_B 1LDJ_B 2HYE_D ....
Probab=99.05 E-value=9.6e-11 Score=93.26 Aligned_cols=44 Identities=45% Similarity=1.138 Sum_probs=36.0
Q ss_pred CCCCcccccccccccC-------------eEeccCcccChhhHHHHHhcCCCCCCCC
Q 010385 287 ASDSTCIICREEMTTA-------------KKLICGHLFHVHCLRSWLERQHTCPTCR 330 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr 330 (512)
..++.|+||++.+.++ ...+|||.||..||.+|++.+.+||+||
T Consensus 17 ~~~d~C~IC~~~l~~~~~~~~~~~~~~~i~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR 73 (73)
T PF12678_consen 17 IADDNCAICREPLEDPCPECQAPQDECPIVWGPCGHIFHFHCISQWLKQNNTCPLCR 73 (73)
T ss_dssp SCCSBETTTTSBTTSTTCCHHHCTTTS-EEEETTSEEEEHHHHHHHHTTSSB-TTSS
T ss_pred CcCCcccccChhhhChhhhhcCCccccceEecccCCCEEHHHHHHHHhcCCcCCCCC
Confidence 3456799999999432 2347999999999999999999999998
No 10
>PF13920 zf-C3HC4_3: Zinc finger, C3HC4 type (RING finger); PDB: 2YHN_B 2YHO_G 3T6P_A 2CSY_A 2VJE_B 2VJF_B 2HDP_B 2EA5_A 2ECG_A 3EB5_A ....
Probab=98.89 E-value=7e-10 Score=81.65 Aligned_cols=46 Identities=39% Similarity=0.820 Sum_probs=41.4
Q ss_pred CCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
+..|.||++...+...+||||. ||..|+.+|+.....||+||+++.
T Consensus 2 ~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CP~Cr~~i~ 48 (50)
T PF13920_consen 2 DEECPICFENPRDVVLLPCGHLCFCEECAERLLKRKKKCPICRQPIE 48 (50)
T ss_dssp HSB-TTTSSSBSSEEEETTCEEEEEHHHHHHHHHTTSBBTTTTBB-S
T ss_pred cCCCccCCccCCceEEeCCCChHHHHHHhHHhcccCCCCCcCChhhc
Confidence 5689999999999999999999 999999999999999999999874
No 11
>PF13923 zf-C3HC4_2: Zinc finger, C3HC4 type (RING finger); PDB: 3HCU_A 2ECI_A 2JMD_A 3HCS_B 3HCT_A 3ZTG_A 2YUR_A 3L11_A.
Probab=98.86 E-value=1e-09 Score=76.35 Aligned_cols=38 Identities=37% Similarity=0.964 Sum_probs=34.0
Q ss_pred ccccccccccC-eEeccCcccChhhHHHHHhcCCCCCCC
Q 010385 292 CIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTC 329 (512)
Q Consensus 292 C~IC~~~~~~~-~~l~C~H~fh~~Cl~~wl~~~~~CP~C 329 (512)
|+||++.+.++ +.++|||.||.+|+.+|++.+..||.|
T Consensus 1 C~iC~~~~~~~~~~~~CGH~fC~~C~~~~~~~~~~CP~C 39 (39)
T PF13923_consen 1 CPICLDELRDPVVVTPCGHSFCKECIEKYLEKNPKCPVC 39 (39)
T ss_dssp ETTTTSB-SSEEEECTTSEEEEHHHHHHHHHCTSB-TTT
T ss_pred CCCCCCcccCcCEECCCCCchhHHHHHHHHHCcCCCcCC
Confidence 89999999999 578999999999999999998899998
No 12
>COG5540 RING-finger-containing ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.82 E-value=2e-09 Score=104.43 Aligned_cols=48 Identities=35% Similarity=0.903 Sum_probs=41.6
Q ss_pred CCCcccccccccccC---eEeccCcccChhhHHHHHh-cCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTA---KKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~---~~l~C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~~~ 335 (512)
.+-+|+||++++... +.|||.|.||..|+++|+. .+..||+||.++++
T Consensus 322 ~GveCaICms~fiK~d~~~vlPC~H~FH~~Cv~kW~~~y~~~CPvCrt~iPP 373 (374)
T COG5540 322 KGVECAICMSNFIKNDRLRVLPCDHRFHVGCVDKWLLGYSNKCPVCRTAIPP 373 (374)
T ss_pred CCceEEEEhhhhcccceEEEeccCceechhHHHHHHhhhcccCCccCCCCCC
Confidence 357899999999755 3679999999999999997 57789999999875
No 13
>PF15227 zf-C3HC4_4: zinc finger of C3HC4-type, RING; PDB: 2EGP_A 2ECV_A 2ECJ_A 2YSL_A 2YSJ_A.
Probab=98.81 E-value=1.9e-09 Score=76.13 Aligned_cols=38 Identities=34% Similarity=0.851 Sum_probs=30.7
Q ss_pred ccccccccccCeEeccCcccChhhHHHHHhcC----CCCCCC
Q 010385 292 CIICREEMTTAKKLICGHLFHVHCLRSWLERQ----HTCPTC 329 (512)
Q Consensus 292 C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~----~~CP~C 329 (512)
|+||++.+++|+.|+|||.||..||.+|.+.. ..||.|
T Consensus 1 CpiC~~~~~~Pv~l~CGH~FC~~Cl~~~~~~~~~~~~~CP~C 42 (42)
T PF15227_consen 1 CPICLDLFKDPVSLPCGHSFCRSCLERLWKEPSGSGFSCPEC 42 (42)
T ss_dssp ETTTTSB-SSEEE-SSSSEEEHHHHHHHHCCSSSST---SSS
T ss_pred CCccchhhCCccccCCcCHHHHHHHHHHHHccCCcCCCCcCC
Confidence 89999999999999999999999999998653 369988
No 14
>smart00504 Ubox Modified RING finger domain. Modified RING finger domain, without the full complement of Zn2+-binding ligands. Probable involvement in E2-dependent ubiquitination.
Probab=98.76 E-value=5.9e-09 Score=80.37 Aligned_cols=46 Identities=22% Similarity=0.319 Sum_probs=42.7
Q ss_pred CcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
..|+||.+.+++|+.++|||+|+.+||.+|+..+.+||.|+.++..
T Consensus 2 ~~Cpi~~~~~~~Pv~~~~G~v~~~~~i~~~~~~~~~cP~~~~~~~~ 47 (63)
T smart00504 2 FLCPISLEVMKDPVILPSGQTYERRAIEKWLLSHGTDPVTGQPLTH 47 (63)
T ss_pred cCCcCCCCcCCCCEECCCCCEEeHHHHHHHHHHCCCCCCCcCCCCh
Confidence 4799999999999999999999999999999888899999988743
No 15
>cd00162 RING RING-finger (Really Interesting New Gene) domain, a specialized type of Zn-finger of 40 to 60 residues that binds two atoms of zinc; defined by the 'cross-brace' motif C-X2-C-X(9-39)-C-X(1-3)- H-X(2-3)-(N/C/H)-X2-C-X(4-48)C-X2-C; probably involved in mediating protein-protein interactions; identified in a proteins with a wide range of functions such as viral replication, signal transduction, and development; has two variants, the C3HC4-type and a C3H2C3-type (RING-H2 finger), which have different cysteine/histidine pattern; a subset of RINGs are associated with B-Boxes (C-X2-H-X7-C-X7-C-X2-C-H-X2-H)
Probab=98.75 E-value=6.5e-09 Score=73.74 Aligned_cols=43 Identities=42% Similarity=1.066 Sum_probs=37.4
Q ss_pred cccccccccccCeEec-cCcccChhhHHHHHhc-CCCCCCCCCcc
Q 010385 291 TCIICREEMTTAKKLI-CGHLFHVHCLRSWLER-QHTCPTCRALV 333 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~ 333 (512)
.|+||++.+..+..++ |||.||..|++.|+.. +..||.||..+
T Consensus 1 ~C~iC~~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~Cp~C~~~~ 45 (45)
T cd00162 1 ECPICLEEFREPVVLLPCGHVFCRSCIDKWLKSGKNTCPLCRTPI 45 (45)
T ss_pred CCCcCchhhhCceEecCCCChhcHHHHHHHHHhCcCCCCCCCCcC
Confidence 5999999997776665 9999999999999987 77899999764
No 16
>KOG0320 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=7.7e-09 Score=93.62 Aligned_cols=50 Identities=28% Similarity=0.737 Sum_probs=43.3
Q ss_pred CCCCcccccccccccCe--EeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTAK--KLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~--~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
+....|+|||+.+.+.. .+.|||+||..||+.-+.....||+||+.|..+
T Consensus 129 ~~~~~CPiCl~~~sek~~vsTkCGHvFC~~Cik~alk~~~~CP~C~kkIt~k 180 (187)
T KOG0320|consen 129 EGTYKCPICLDSVSEKVPVSTKCGHVFCSQCIKDALKNTNKCPTCRKKITHK 180 (187)
T ss_pred ccccCCCceecchhhccccccccchhHHHHHHHHHHHhCCCCCCcccccchh
Confidence 34578999999997654 578999999999999999999999999988654
No 17
>KOG0828 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=6.2e-08 Score=99.70 Aligned_cols=49 Identities=31% Similarity=0.852 Sum_probs=39.4
Q ss_pred CCCCcccccccccccC-----------------eEeccCcccChhhHHHHHhc-CCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTA-----------------KKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~-----------------~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~ 335 (512)
+...+|+||+.+.+-- ..+||.|+||..|+.+|++. +-.||+||+++++
T Consensus 569 ~~t~dC~ICMt~I~l~~~~s~~~~~~~~~~~nYm~tPC~HifH~~CL~~WMd~ykl~CPvCR~pLPp 635 (636)
T KOG0828|consen 569 RRTNDCVICMTPIDLRSTGSDCMVASMMVRRNYMLTPCHHIFHRQCLLQWMDTYKLICPVCRCPLPP 635 (636)
T ss_pred hccccceEeccccceeeccCcchhhhhhhhccccccchHHHHHHHHHHHHHhhhcccCCccCCCCCC
Confidence 4467899999887421 13599999999999999995 5589999999864
No 18
>KOG1734 consensus Predicted RING-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.69 E-value=1.1e-06 Score=84.52 Aligned_cols=49 Identities=39% Similarity=0.951 Sum_probs=40.1
Q ss_pred CCCCcccccccccccC----------eEeccCcccChhhHHHHH--hcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTA----------KKLICGHLFHVHCLRSWL--ERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~----------~~l~C~H~fh~~Cl~~wl--~~~~~CP~Cr~~~~~ 335 (512)
.++..|+||-..+... .+|.|+|+||..||+.|- .++++||.|+..+..
T Consensus 222 l~d~vCaVCg~~~~~s~~eegvienty~LsCnHvFHEfCIrGWcivGKkqtCPYCKekVdl 282 (328)
T KOG1734|consen 222 LSDSVCAVCGQQIDVSVDEEGVIENTYKLSCNHVFHEFCIRGWCIVGKKQTCPYCKEKVDL 282 (328)
T ss_pred CCcchhHhhcchheeecchhhhhhhheeeecccchHHHhhhhheeecCCCCCchHHHHhhH
Confidence 4578999998766432 378999999999999996 568899999988753
No 19
>KOG1785 consensus Tyrosine kinase negative regulator CBL [Defense mechanisms]
Probab=98.67 E-value=8.1e-08 Score=96.43 Aligned_cols=56 Identities=32% Similarity=0.612 Sum_probs=46.9
Q ss_pred CcccccccccccCeEeccCcccChhhHHHHHhc--CCCCCCCCCccCCCCCCCCCCCC
Q 010385 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLER--QHTCPTCRALVVPPENGASTAGV 345 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~--~~~CP~Cr~~~~~~~~~~~~~~~ 345 (512)
..|.||-|.-++.+.-||||..|..|+..|-.. .++||.||.+|...+........
T Consensus 370 eLCKICaendKdvkIEPCGHLlCt~CLa~WQ~sd~gq~CPFCRcEIKGte~viid~F~ 427 (563)
T KOG1785|consen 370 ELCKICAENDKDVKIEPCGHLLCTSCLAAWQDSDEGQTCPFCRCEIKGTEPVIIDPFD 427 (563)
T ss_pred HHHHHhhccCCCcccccccchHHHHHHHhhcccCCCCCCCceeeEeccccceeeeccC
Confidence 569999999988889999999999999999844 68999999999876655544433
No 20
>PF12861 zf-Apc11: Anaphase-promoting complex subunit 11 RING-H2 finger
Probab=98.65 E-value=1.2e-08 Score=82.06 Aligned_cols=47 Identities=36% Similarity=0.805 Sum_probs=37.8
Q ss_pred CCCcccccccccccC------------e-EeccCcccChhhHHHHHhc---CCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTA------------K-KLICGHLFHVHCLRSWLER---QHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~------------~-~l~C~H~fh~~Cl~~wl~~---~~~CP~Cr~~~~ 334 (512)
.++.|.||+..|+.. . .-.|+|.||..||.+|+++ +..||+||++..
T Consensus 20 ~dd~CgICr~~fdg~Cp~Ck~Pgd~Cplv~g~C~H~FH~hCI~kWl~~~~~~~~CPmCR~~w~ 82 (85)
T PF12861_consen 20 NDDVCGICRMPFDGCCPDCKFPGDDCPLVWGKCSHNFHMHCILKWLSTQSSKGQCPMCRQPWK 82 (85)
T ss_pred CCCceeeEecccccCCCCccCCCCCCceeeccCccHHHHHHHHHHHccccCCCCCCCcCCeee
Confidence 478999999998731 1 1159999999999999975 468999999864
No 21
>PF00097 zf-C3HC4: Zinc finger, C3HC4 type (RING finger); InterPro: IPR018957 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The C3HC4 type zinc-finger (RING finger) is a cysteine-rich domain of 40 to 60 residues that coordinates two zinc ions, and has the consensus sequence: C-X2-C-X(9-39)-C-X(1-3)-H-X(2-3)-C-X2-C-X(4-48)-C-X2-C where X is any amino acid []. Many proteins containing a RING finger play a key role in the ubiquitination pathway []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; PDB: 1CHC_A 2ECW_A 2Y43_B 1V87_A 2DJB_A 2H0D_B 3RPG_C 3KNV_A 2CKL_B 1JM7_A ....
Probab=98.60 E-value=2e-08 Score=70.60 Aligned_cols=38 Identities=47% Similarity=1.047 Sum_probs=35.0
Q ss_pred ccccccccccCe-EeccCcccChhhHHHHHh--cCCCCCCC
Q 010385 292 CIICREEMTTAK-KLICGHLFHVHCLRSWLE--RQHTCPTC 329 (512)
Q Consensus 292 C~IC~~~~~~~~-~l~C~H~fh~~Cl~~wl~--~~~~CP~C 329 (512)
|+||++.+.++. .++|||.||..|+++|++ ....||.|
T Consensus 1 C~iC~~~~~~~~~~~~C~H~fC~~C~~~~~~~~~~~~CP~C 41 (41)
T PF00097_consen 1 CPICLEPFEDPVILLPCGHSFCRDCLRKWLENSGSVKCPLC 41 (41)
T ss_dssp ETTTSSBCSSEEEETTTSEEEEHHHHHHHHHHTSSSBTTTT
T ss_pred CCcCCccccCCCEEecCCCcchHHHHHHHHHhcCCccCCcC
Confidence 899999999998 889999999999999998 46679998
No 22
>PHA02926 zinc finger-like protein; Provisional
Probab=98.56 E-value=2.9e-08 Score=93.13 Aligned_cols=48 Identities=27% Similarity=0.737 Sum_probs=38.1
Q ss_pred CCCCccccccccccc---------CeEeccCcccChhhHHHHHhcC------CCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTT---------AKKLICGHLFHVHCLRSWLERQ------HTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~---------~~~l~C~H~fh~~Cl~~wl~~~------~~CP~Cr~~~~ 334 (512)
+.+.+|+||+|...+ +...+|+|.||..||+.|...+ .+||+||....
T Consensus 168 SkE~eCgICmE~I~eK~~~~eRrFGIL~~CnHsFCl~CIr~Wr~~r~~~~~~rsCPiCR~~f~ 230 (242)
T PHA02926 168 SKEKECGICYEVVYSKRLENDRYFGLLDSCNHIFCITCINIWHRTRRETGASDNCPICRTRFR 230 (242)
T ss_pred cCCCCCccCccccccccccccccccccCCCCchHHHHHHHHHHHhccccCcCCcCCCCcceee
Confidence 457899999998633 2344899999999999999753 45999999764
No 23
>smart00184 RING Ring finger. E3 ubiquitin-protein ligase activity is intrinsic to the RING domain of c-Cbl and is likely to be a general function of this domain; Various RING fingers exhibit binding activity towards E2 ubiquitin-conjugating enzymes (Ubc' s)
Probab=98.53 E-value=5.5e-08 Score=66.49 Aligned_cols=38 Identities=47% Similarity=1.128 Sum_probs=34.9
Q ss_pred ccccccccccCeEeccCcccChhhHHHHHh-cCCCCCCC
Q 010385 292 CIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTC 329 (512)
Q Consensus 292 C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~-~~~~CP~C 329 (512)
|+||++....+..++|||.||..|++.|+. .+..||.|
T Consensus 1 C~iC~~~~~~~~~~~C~H~~c~~C~~~~~~~~~~~CP~C 39 (39)
T smart00184 1 CPICLEELKDPVVLPCGHTFCRSCIRKWLKSGNNTCPIC 39 (39)
T ss_pred CCcCccCCCCcEEecCCChHHHHHHHHHHHhCcCCCCCC
Confidence 889999988889999999999999999998 56779987
No 24
>TIGR00599 rad18 DNA repair protein rad18. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=98.52 E-value=5.3e-08 Score=100.94 Aligned_cols=49 Identities=31% Similarity=0.632 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
+....|.||.+.+..|+.++|||.||..|+..|+.....||.||..+..
T Consensus 24 e~~l~C~IC~d~~~~PvitpCgH~FCs~CI~~~l~~~~~CP~Cr~~~~~ 72 (397)
T TIGR00599 24 DTSLRCHICKDFFDVPVLTSCSHTFCSLCIRRCLSNQPKCPLCRAEDQE 72 (397)
T ss_pred ccccCCCcCchhhhCccCCCCCCchhHHHHHHHHhCCCCCCCCCCcccc
Confidence 3567999999999999999999999999999999888889999998864
No 25
>COG5574 PEX10 RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.52 E-value=3.4e-08 Score=94.89 Aligned_cols=50 Identities=40% Similarity=0.897 Sum_probs=44.9
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHH-HHhcCCC-CCCCCCccCCCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRS-WLERQHT-CPTCRALVVPPE 337 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~-wl~~~~~-CP~Cr~~~~~~~ 337 (512)
.+..|+||++..+.+..++|||+||+.||.. |-.++.. ||+||+.+.+.+
T Consensus 214 ~d~kC~lC~e~~~~ps~t~CgHlFC~~Cl~~~~t~~k~~~CplCRak~~pk~ 265 (271)
T COG5574 214 ADYKCFLCLEEPEVPSCTPCGHLFCLSCLLISWTKKKYEFCPLCRAKVYPKK 265 (271)
T ss_pred cccceeeeecccCCcccccccchhhHHHHHHHHHhhccccCchhhhhccchh
Confidence 4788999999999999999999999999999 9877666 999999887654
No 26
>PF13705 TRC8_N: TRC8 N-terminal domain
Probab=98.44 E-value=2.1e-06 Score=90.72 Aligned_cols=177 Identities=23% Similarity=0.342 Sum_probs=116.0
Q ss_pred HHHHHHHHHHHHHHHHH--HHHHHhccCCcHHHHHHHHHhhHHHHHHHHHhhhhccccch-------hHHHHHHHHHHHH
Q 010385 43 LVLLMNMGLVIMCILWQ--LIKKVFLGSLREAEVERLNEQSRREIMEILFAITIFRQDFS-------VSFLAMVTTLLLI 113 (512)
Q Consensus 43 ~~il~N~~~~~~~~~~~--~~~~~ffG~Lr~~E~e~l~e~~~~~v~~~lf~~~if~~~~~-------~~~l~~~~~ll~l 113 (512)
...+.-++.++.++... ...+.+.|.=++.|-++ ..++--.+|.+..++..+. .--+....++++.
T Consensus 279 ~~sllgms~vvS~ia~~i~~~~~~~l~g~~~~~~~~-----~G~~~~vlf~iLalQTGL~~l~~~~R~~~L~~~l~lv~t 353 (508)
T PF13705_consen 279 PLSLLGMSFVVSYIAHYIGLLCQFFLGGYDEFEDKN-----RGTTEAVLFFILALQTGLLGLKPEQRLVRLSRNLFLVLT 353 (508)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhCCcccccccc-----cchHHHHHHHHHHHHhCCccCCHHHHHHHHHHHHHHHHH
Confidence 34455566665555533 23466777777756554 2233335666666654322 1122233344455
Q ss_pred HHHHHHH---hhhhcccccCCCCChhHHHHHHHHHHHHHHHHHHHHHHHHHH-HHhhcChhHHHHHHHHHHHHHHHHHHH
Q 010385 114 KALHWLA---QKRVEYIETTPTVPLLSHIRIVSFMSFLLLVDSLFLYSSVKF-LLQTRQASVSLFFSFEYMILATTTVSI 189 (512)
Q Consensus 114 k~~h~l~---~dR~e~l~~sp~~~~~~h~R~~~~l~~ll~~d~~~~~~~~~~-~~~~~~~~~~l~f~fE~~il~~~~~~~ 189 (512)
..+|.+. .-.+-.|..+.+.++++|.|.++...+|+++..++.|..+.+ .+++|...+.. |+.|-+ +..+.+
T Consensus 354 a~Lh~~~ei~~pvLmsL~As~~~s~~rH~R~L~v~~~Ll~~P~~~~y~l~~~~~i~tWll~v~s-~~~~t~---vkv~~s 429 (508)
T PF13705_consen 354 ALLHSLHEIVDPVLMSLSASHNRSFWRHFRALSVCLFLLVFPLYLSYYLWSFFPIDTWLLIVTS-FCVETI---VKVLGS 429 (508)
T ss_pred HHHHHHHHHhHHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCChHHHHHHHHH-HHHHHH---HHHHHH
Confidence 5555555 444555677888899999999999999999998888765543 34555544443 444444 345556
Q ss_pred HHHHhhhhhhccccccccchhhhHHHHHHHHHHHHHHHH
Q 010385 190 FVKYVFYVSDMLMEGQWERKAVYTFYLELIRDLLHLSMY 228 (512)
Q Consensus 190 ~~~y~~~~~d~~~~~~we~k~~~~~y~~l~~~~l~l~~~ 228 (512)
+..|.+++.|...+..||+.+++.||++-+...+++..-
T Consensus 430 l~iY~Lf~vd~~~~~~WE~LDD~VYyv~a~~~~~EFl~~ 468 (508)
T PF13705_consen 430 LAIYILFMVDARREEPWEKLDDYVYYVRATGRVLEFLVG 468 (508)
T ss_pred HHHHHHHHHHhhcccchhhcccEEEEEeccCcEeeehhh
Confidence 678999999999999999999999999998888876543
No 27
>PF14634 zf-RING_5: zinc-RING finger domain
Probab=98.39 E-value=1.8e-07 Score=66.89 Aligned_cols=41 Identities=34% Similarity=0.845 Sum_probs=35.2
Q ss_pred ccccccccc---ccCeEeccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 291 TCIICREEM---TTAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 291 ~C~IC~~~~---~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
.|.||++.+ ..+..++|||.||..|+.++......||+||+
T Consensus 1 ~C~~C~~~~~~~~~~~l~~CgH~~C~~C~~~~~~~~~~CP~C~k 44 (44)
T PF14634_consen 1 HCNICFEKYSEERRPRLTSCGHIFCEKCLKKLKGKSVKCPICRK 44 (44)
T ss_pred CCcCcCccccCCCCeEEcccCCHHHHHHHHhhcCCCCCCcCCCC
Confidence 489999999 24567899999999999999866778999985
No 28
>KOG0804 consensus Cytoplasmic Zn-finger protein BRAP2 (BRCA1 associated protein) [General function prediction only]
Probab=98.36 E-value=2.3e-07 Score=94.89 Aligned_cols=44 Identities=36% Similarity=0.933 Sum_probs=37.2
Q ss_pred CCcccccccccccCe----EeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAK----KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~----~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
-.+|++|+|.|+... .+.|.|.||..|+..| ...+||+||....
T Consensus 175 LPTCpVCLERMD~s~~gi~t~~c~Hsfh~~cl~~w--~~~scpvcR~~q~ 222 (493)
T KOG0804|consen 175 LPTCPVCLERMDSSTTGILTILCNHSFHCSCLMKW--WDSSCPVCRYCQS 222 (493)
T ss_pred CCCcchhHhhcCccccceeeeecccccchHHHhhc--ccCcChhhhhhcC
Confidence 468999999998754 5579999999999999 4578999998654
No 29
>KOG0287 consensus Postreplication repair protein RAD18 [Replication, recombination and repair]
Probab=98.33 E-value=1.4e-07 Score=93.13 Aligned_cols=49 Identities=31% Similarity=0.605 Sum_probs=45.4
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCCCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~ 337 (512)
-..|.||.|.|..|..+||+|.||.-||+..|..+..||.|+.++.+..
T Consensus 23 lLRC~IC~eyf~ip~itpCsHtfCSlCIR~~L~~~p~CP~C~~~~~Es~ 71 (442)
T KOG0287|consen 23 LLRCGICFEYFNIPMITPCSHTFCSLCIRKFLSYKPQCPTCCVTVTESD 71 (442)
T ss_pred HHHHhHHHHHhcCceeccccchHHHHHHHHHhccCCCCCceecccchhh
Confidence 4689999999999999999999999999999999999999999987543
No 30
>PF13445 zf-RING_UBOX: RING-type zinc-finger; PDB: 2CT2_A.
Probab=98.33 E-value=1.8e-07 Score=66.12 Aligned_cols=35 Identities=40% Similarity=0.977 Sum_probs=22.4
Q ss_pred cccccccccc----CeEeccCcccChhhHHHHHhcC----CCCC
Q 010385 292 CIICREEMTT----AKKLICGHLFHVHCLRSWLERQ----HTCP 327 (512)
Q Consensus 292 C~IC~~~~~~----~~~l~C~H~fh~~Cl~~wl~~~----~~CP 327 (512)
|+||.| +.+ |+.|+|||.||.+|++++..++ ..||
T Consensus 1 CpIc~e-~~~~~n~P~~L~CGH~~c~~cl~~l~~~~~~~~~kCP 43 (43)
T PF13445_consen 1 CPICKE-FSTEENPPMVLPCGHVFCKDCLQKLSKKSDRNRFKCP 43 (43)
T ss_dssp -TTT-----TTSS-EEE-SSS-EEEHHHHHHHHHH-S-S-B--T
T ss_pred CCcccc-ccCCCCCCEEEeCccHHHHHHHHHHHhcCCCCeeeCc
Confidence 899999 877 8999999999999999999753 2476
No 31
>PF04564 U-box: U-box domain; InterPro: IPR003613 Quality control of intracellular proteins is essential for cellular homeostasis. Molecular chaperones recognise and contribute to the refolding of misfolded or unfolded proteins, whereas the ubiquitin-proteasome system mediates the degradation of such abnormal proteins. Ubiquitin-protein ligases (E3s) determine the substrate specificity for ubiquitylation and have been classified into HECT and RING-finger families. More recently, however, U-box proteins, which contain a domain (the U box) of about 70 amino acids that is conserved from yeast to humans, have been identified as a new type of E3 []. Members of the U-box family of proteins constitute a class of ubiquitin-protein ligases (E3s) distinct from the HECT-type and RING finger-containing E3 families []. Using yeast two-hybrid technology, all mammalian U-box proteins have been reported to interact with molecular chaperones or co-chaperones, including Hsp90, Hsp70, DnaJc7, EKN1, CRN, and VCP. This suggests that the function of U box-type E3s is to mediate the degradation of unfolded or misfolded proteins in conjunction with molecular chaperones as receptors that recognise such abnormal proteins [, ]. Unlike the RING finger domain, IPR001841 from INTERPRO, that is stabilised by Zn2+ ions coordinated by the cysteines and a histidine, the U-box scaffold is probably stabilised by a system of salt-bridges and hydrogen bonds. The charged and polar residues that participate in this network of bonds are more strongly conserved in the U-box proteins than in classic RING fingers, which supports their role in maintaining the stability of the U box. Thus, the U box appears to have evolved from a RING finger domain by appropriation of a new set of residues required to stabilise its structure, concomitant with the loss of the original, metal-chelating residues [].; GO: 0004842 ubiquitin-protein ligase activity, 0016567 protein ubiquitination, 0000151 ubiquitin ligase complex; PDB: 1T1H_A 2C2L_D 2C2V_V 1WGM_A 2KR4_A 3L1Z_B 3L1X_A 2KRE_A 3M63_A 2QIZ_A ....
Probab=98.31 E-value=2.4e-07 Score=73.83 Aligned_cols=48 Identities=27% Similarity=0.412 Sum_probs=39.6
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhc-CCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~ 335 (512)
+...|+||.+.|.+|+.+||||.|...||.+|+.+ +.+||.|+.++..
T Consensus 3 ~~f~CpIt~~lM~dPVi~~~G~tyer~~I~~~l~~~~~~~P~t~~~l~~ 51 (73)
T PF04564_consen 3 DEFLCPITGELMRDPVILPSGHTYERSAIERWLEQNGGTDPFTRQPLSE 51 (73)
T ss_dssp GGGB-TTTSSB-SSEEEETTSEEEEHHHHHHHHCTTSSB-TTT-SB-SG
T ss_pred cccCCcCcCcHhhCceeCCcCCEEcHHHHHHHHHcCCCCCCCCCCcCCc
Confidence 35689999999999999999999999999999988 8899999998864
No 32
>COG5432 RAD18 RING-finger-containing E3 ubiquitin ligase [Signal transduction mechanisms]
Probab=98.25 E-value=3.8e-07 Score=88.27 Aligned_cols=47 Identities=32% Similarity=0.650 Sum_probs=43.8
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
-..|-||-+.+..|..++|||.||.-||+..|..+..||+||.+-..
T Consensus 25 ~lrC~IC~~~i~ip~~TtCgHtFCslCIR~hL~~qp~CP~Cr~~~~e 71 (391)
T COG5432 25 MLRCRICDCRISIPCETTCGHTFCSLCIRRHLGTQPFCPVCREDPCE 71 (391)
T ss_pred HHHhhhhhheeecceecccccchhHHHHHHHhcCCCCCccccccHHh
Confidence 46899999999999999999999999999999999999999988643
No 33
>KOG2164 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.22 E-value=5e-07 Score=94.35 Aligned_cols=55 Identities=25% Similarity=0.571 Sum_probs=45.8
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhc-----CCCCCCCCCccCCCCCCCCCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-----QHTCPTCRALVVPPENGASTA 343 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-----~~~CP~Cr~~~~~~~~~~~~~ 343 (512)
+..|+||++....|..+.|||+||..||-+.+.. ...||+||..|...+..+...
T Consensus 186 ~~~CPICL~~~~~p~~t~CGHiFC~~CiLqy~~~s~~~~~~~CPiC~s~I~~kdl~pv~~ 245 (513)
T KOG2164|consen 186 DMQCPICLEPPSVPVRTNCGHIFCGPCILQYWNYSAIKGPCSCPICRSTITLKDLLPVFI 245 (513)
T ss_pred CCcCCcccCCCCcccccccCceeeHHHHHHHHhhhcccCCccCCchhhhccccceeeeee
Confidence 7899999999999999999999999999996644 356999999998755444433
No 34
>COG5194 APC11 Component of SCF ubiquitin ligase and anaphase-promoting complex [Posttranslational modification, protein turnover, chaperones / Cell division and chromosome partitioning]
Probab=98.16 E-value=1e-06 Score=69.08 Aligned_cols=47 Identities=34% Similarity=0.832 Sum_probs=36.7
Q ss_pred CCcccccccccccC-----------e--Ee---ccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTA-----------K--KL---ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~-----------~--~l---~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
-+.|+||+..+... . .+ .|.|.||..||.+||..+..||+||++..-
T Consensus 20 id~CaICRnhim~~C~eCq~~~~~~~eC~v~wG~CnHaFH~HCI~rWL~Tk~~CPld~q~w~~ 82 (88)
T COG5194 20 IDVCAICRNHIMGTCPECQFGMTPGDECPVVWGVCNHAFHDHCIYRWLDTKGVCPLDRQTWVL 82 (88)
T ss_pred cchhhhhhccccCcCcccccCCCCCCcceEEEEecchHHHHHHHHHHHhhCCCCCCCCceeEE
Confidence 36788888765421 1 11 399999999999999999999999998753
No 35
>KOG1493 consensus Anaphase-promoting complex (APC), subunit 11 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=98.15 E-value=5.8e-07 Score=69.81 Aligned_cols=47 Identities=45% Similarity=0.906 Sum_probs=37.1
Q ss_pred CCCcccccccccccC---eEec----------cCcccChhhHHHHHhc---CCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTA---KKLI----------CGHLFHVHCLRSWLER---QHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~---~~l~----------C~H~fh~~Cl~~wl~~---~~~CP~Cr~~~~ 334 (512)
.+++|.||+-.|+.. -++| |.|.||..||.+|+.. +..||+||++..
T Consensus 19 ~~e~CGiCRm~Fdg~Cp~Ck~PgDdCPLv~G~C~h~fh~hCI~~wl~~~tsq~~CPmcRq~~~ 81 (84)
T KOG1493|consen 19 PDETCGICRMPFDGCCPDCKLPGDDCPLVWGYCLHAFHAHCILKWLNTPTSQGQCPMCRQTWQ 81 (84)
T ss_pred CCCccceEecccCCcCCCCcCCCCCCccHHHHHHHHHHHHHHHHHhcCccccccCCcchheeE
Confidence 456999999988642 2333 9999999999999965 456999998764
No 36
>KOG4265 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.03 E-value=3e-06 Score=85.16 Aligned_cols=49 Identities=31% Similarity=0.650 Sum_probs=44.5
Q ss_pred CCCCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
++..+|.||+.+-.+-..|||.|. .|..|.+....+++.||+||+++..
T Consensus 288 ~~gkeCVIClse~rdt~vLPCRHLCLCs~Ca~~Lr~q~n~CPICRqpi~~ 337 (349)
T KOG4265|consen 288 ESGKECVICLSESRDTVVLPCRHLCLCSGCAKSLRYQTNNCPICRQPIEE 337 (349)
T ss_pred cCCCeeEEEecCCcceEEecchhhehhHhHHHHHHHhhcCCCccccchHh
Confidence 457899999999999999999997 9999999987788999999999864
No 37
>COG5219 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.98 E-value=1.9e-06 Score=94.72 Aligned_cols=48 Identities=29% Similarity=0.843 Sum_probs=39.2
Q ss_pred CCCCcccccccccc-cCeEec------cCcccChhhHHHHHhc--CCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMT-TAKKLI------CGHLFHVHCLRSWLER--QHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~-~~~~l~------C~H~fh~~Cl~~wl~~--~~~CP~Cr~~~~ 334 (512)
++..+|+||+.... ..+++| |+|.||..|+.+|... +.+||+||.+++
T Consensus 1467 sG~eECaICYsvL~~vdr~lPskrC~TCknKFH~~CLyKWf~Ss~~s~CPlCRseit 1523 (1525)
T COG5219 1467 SGHEECAICYSVLDMVDRSLPSKRCATCKNKFHTRCLYKWFASSARSNCPLCRSEIT 1523 (1525)
T ss_pred CCcchhhHHHHHHHHHhccCCccccchhhhhhhHHHHHHHHHhcCCCCCCccccccc
Confidence 45679999999887 444554 8999999999999965 668999998764
No 38
>KOG2930 consensus SCF ubiquitin ligase, Rbx1 component [Posttranslational modification, protein turnover, chaperones]
Probab=97.96 E-value=2.6e-06 Score=70.13 Aligned_cols=46 Identities=33% Similarity=0.850 Sum_probs=35.8
Q ss_pred CCcccccccccccC--------------eEe---ccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTA--------------KKL---ICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~--------------~~l---~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
.+.|+||+...-+. -.. -|.|.||..||.+|+++++.||+|.++..
T Consensus 46 vDnCAICRnHIMd~CieCQa~~~~~~~EC~VaWG~CNHaFH~hCisrWlktr~vCPLdn~eW~ 108 (114)
T KOG2930|consen 46 VDNCAICRNHIMDLCIECQANQSATSEECTVAWGVCNHAFHFHCISRWLKTRNVCPLDNKEWV 108 (114)
T ss_pred echhHHHHHHHHHHHHhhccCCCCCCCceEEEeeecchHHHHHHHHHHHhhcCcCCCcCccee
Confidence 47899998654210 111 49999999999999999999999988753
No 39
>PF11793 FANCL_C: FANCL C-terminal domain; PDB: 3K1L_A.
Probab=97.90 E-value=2.9e-06 Score=66.92 Aligned_cols=46 Identities=28% Similarity=0.745 Sum_probs=23.0
Q ss_pred CCcccccccccccCeEe--------ccCcccChhhHHHHHhc---C--------CCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKL--------ICGHLFHVHCLRSWLER---Q--------HTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l--------~C~H~fh~~Cl~~wl~~---~--------~~CP~Cr~~~~ 334 (512)
+.+|.||++...+...+ .|++.||..||.+|+.. . ..||.|+.+|.
T Consensus 2 ~~~C~IC~~~~~~~~~~p~~~C~n~~C~~~fH~~CL~~wf~~~~~~~~~~~~~~G~CP~C~~~i~ 66 (70)
T PF11793_consen 2 ELECGICYSYRLDDGEIPDVVCPNPSCGKKFHLLCLSEWFLSLEKSRQSFIPIFGECPYCSSPIS 66 (70)
T ss_dssp --S-SSS--SS-TT-----B--S-TT----B-SGGGHHHHHHHHSSS-TTT--EEE-TTT-SEEE
T ss_pred CCCCCcCCcEecCCCCcCceEcCCcccCCHHHHHHHHHHHHHcccCCeeecccccCCcCCCCeee
Confidence 45899999886522211 59999999999999964 1 14999999874
No 40
>KOG2177 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.82 E-value=6.6e-06 Score=82.51 Aligned_cols=45 Identities=38% Similarity=0.727 Sum_probs=40.3
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
.+...|+||++.+..|+.+||||.||..|+..+......||.||.
T Consensus 11 ~~~~~C~iC~~~~~~p~~l~C~H~~c~~C~~~~~~~~~~Cp~cr~ 55 (386)
T KOG2177|consen 11 QEELTCPICLEYFREPVLLPCGHNFCRACLTRSWEGPLSCPVCRP 55 (386)
T ss_pred cccccChhhHHHhhcCccccccchHhHHHHHHhcCCCcCCcccCC
Confidence 456799999999999999999999999999998875567999993
No 41
>KOG4172 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.78 E-value=5.3e-06 Score=60.24 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=39.9
Q ss_pred CCCCcccccccccccCeEeccCcc-cChhhHHHHH-hcCCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHL-FHVHCLRSWL-ERQHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl-~~~~~CP~Cr~~~~ 334 (512)
+.+++|.||+|...+.+.--|||. .|..|-.+-+ ..+..||+||+++.
T Consensus 5 ~~~dECTICye~pvdsVlYtCGHMCmCy~Cg~rl~~~~~g~CPiCRapi~ 54 (62)
T KOG4172|consen 5 QWSDECTICYEHPVDSVLYTCGHMCMCYACGLRLKKALHGCCPICRAPIK 54 (62)
T ss_pred ccccceeeeccCcchHHHHHcchHHhHHHHHHHHHHccCCcCcchhhHHH
Confidence 345899999999888888899996 8999977744 46889999999874
No 42
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.76 E-value=1e-05 Score=79.23 Aligned_cols=48 Identities=25% Similarity=0.593 Sum_probs=42.3
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhc-CCCCCCCCCccCCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~~ 336 (512)
+.+|.||+.+...|+.++|+|.||..||+.-... ..+|++||.++...
T Consensus 7 ~~eC~IC~nt~n~Pv~l~C~HkFCyiCiKGsy~ndk~~CavCR~pids~ 55 (324)
T KOG0824|consen 7 KKECLICYNTGNCPVNLYCFHKFCYICIKGSYKNDKKTCAVCRFPIDST 55 (324)
T ss_pred CCcceeeeccCCcCccccccchhhhhhhcchhhcCCCCCceecCCCCcc
Confidence 5689999999999999999999999999986555 55699999999754
No 43
>smart00744 RINGv The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity. The RING-variant domain is reminiscent of both the RING and the PHD domains and may represent an evolutionary intermediate. To describe this domain the term PHD/LAP domain has been used in the past. Extended description: The RING-variant (RINGv) domain contains a C4HC3 zinc-finger-like motif similar to the PHD domain, while some of the spacing between the Cys/His residues follow a pattern somewhat closer to that found in the RING domain. The RINGv domain, similar to the RING, PHD and LIM domains, is thought to bind two zinc ions co-ordinated by the highly conserved Cys and His residues. RING variant domain: C-x (2) -C-x(10-45)-C-x (1) -C-x (7) -H-x(2)-C-x(11-25)-C-x(2)-C As opposed to a PHD: C-x(1-2) -C-x (7-13)-C-x(2-4)-C-x(4-5)-H-x(2)-C-x(10-21)-C-x(2)-C Class
Probab=97.75 E-value=1.6e-05 Score=58.10 Aligned_cols=40 Identities=28% Similarity=0.810 Sum_probs=31.2
Q ss_pred ccccccc--ccccCeEeccC-----cccChhhHHHHHhc--CCCCCCCC
Q 010385 291 TCIICRE--EMTTAKKLICG-----HLFHVHCLRSWLER--QHTCPTCR 330 (512)
Q Consensus 291 ~C~IC~~--~~~~~~~l~C~-----H~fh~~Cl~~wl~~--~~~CP~Cr 330 (512)
.|.||++ +-.++...||. |.+|..|+++|+.. +.+||+|+
T Consensus 1 ~CrIC~~~~~~~~~l~~PC~C~G~~~~vH~~Cl~~W~~~~~~~~C~iC~ 49 (49)
T smart00744 1 ICRICHDEGDEGDPLVSPCRCKGSLKYVHQECLERWINESGNKTCEICK 49 (49)
T ss_pred CccCCCCCCCCCCeeEeccccCCchhHHHHHHHHHHHHHcCCCcCCCCC
Confidence 4899998 33345567885 88999999999955 45899995
No 44
>TIGR00570 cdk7 CDK-activating kinase assembly factor MAT1. All proteins in this family for which functions are known are cyclin dependent protein kinases that are components of TFIIH, a complex that is involved in nucleotide excision repair and transcription initiation. Also known as MAT1 (menage a trois 1). This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
Probab=97.70 E-value=2.5e-05 Score=78.18 Aligned_cols=49 Identities=22% Similarity=0.646 Sum_probs=36.5
Q ss_pred CCcccccccc-cccCe-E-e--ccCcccChhhHHHHH-hcCCCCCCCCCccCCCC
Q 010385 289 DSTCIICREE-MTTAK-K-L--ICGHLFHVHCLRSWL-ERQHTCPTCRALVVPPE 337 (512)
Q Consensus 289 ~~~C~IC~~~-~~~~~-~-l--~C~H~fh~~Cl~~wl-~~~~~CP~Cr~~~~~~~ 337 (512)
+..|++|..+ +..|. + + +|||.||..|++..+ .....||.|+..+....
T Consensus 3 ~~~CP~Ck~~~y~np~~kl~i~~CGH~~C~sCv~~l~~~~~~~CP~C~~~lrk~~ 57 (309)
T TIGR00570 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGSGSCPECDTPLRKNN 57 (309)
T ss_pred CCCCCcCCCCCccCcccccccCCCCCcccHHHHHHHhcCCCCCCCCCCCccchhh
Confidence 4589999985 33332 1 1 799999999999955 44668999998886443
No 45
>PF14835 zf-RING_6: zf-RING of BARD1-type protein; PDB: 1JM7_B.
Probab=97.64 E-value=2e-05 Score=59.90 Aligned_cols=46 Identities=26% Similarity=0.596 Sum_probs=24.9
Q ss_pred CCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
-..|++|.+.+++|+.+ .|.|.||..|+..-+. ..||+|+.+-...
T Consensus 7 lLrCs~C~~~l~~pv~l~~CeH~fCs~Ci~~~~~--~~CPvC~~Paw~q 53 (65)
T PF14835_consen 7 LLRCSICFDILKEPVCLGGCEHIFCSSCIRDCIG--SECPVCHTPAWIQ 53 (65)
T ss_dssp TTS-SSS-S--SS-B---SSS--B-TTTGGGGTT--TB-SSS--B-S-S
T ss_pred hcCCcHHHHHhcCCceeccCccHHHHHHhHHhcC--CCCCCcCChHHHH
Confidence 45799999999999864 7999999999988554 3499998876543
No 46
>KOG4159 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=6.4e-05 Score=78.31 Aligned_cols=49 Identities=31% Similarity=0.730 Sum_probs=45.6
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
..+..|.||+..+..|+.+||||.||..||.+-+.+...||.||..+..
T Consensus 82 ~sef~c~vc~~~l~~pv~tpcghs~c~~Cl~r~ld~~~~cp~Cr~~l~e 130 (398)
T KOG4159|consen 82 RSEFECCVCSRALYPPVVTPCGHSFCLECLDRSLDQETECPLCRDELVE 130 (398)
T ss_pred cchhhhhhhHhhcCCCccccccccccHHHHHHHhccCCCCccccccccc
Confidence 6788999999999999999999999999999988888889999999975
No 47
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.43 E-value=5.2e-05 Score=76.59 Aligned_cols=44 Identities=36% Similarity=1.011 Sum_probs=33.2
Q ss_pred CcccccccccccCeEe----ccCcccChhhHHHHHhc---CCCCCCCCCcc
Q 010385 290 STCIICREEMTTAKKL----ICGHLFHVHCLRSWLER---QHTCPTCRALV 333 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l----~C~H~fh~~Cl~~wl~~---~~~CP~Cr~~~ 333 (512)
..|.||-+-.....-+ .|||+||..|+..|++. +..||.||-.+
T Consensus 5 A~C~Ic~d~~p~~~~l~~i~~cGhifh~~cl~qwfe~~Ps~R~cpic~ik~ 55 (465)
T KOG0827|consen 5 AECHICIDGRPNDHELGPIGTCGHIFHTTCLTQWFEGDPSNRGCPICQIKL 55 (465)
T ss_pred ceeeEeccCCccccccccccchhhHHHHHHHHHHHccCCccCCCCceeecc
Confidence 4799995554444333 49999999999999987 35799999333
No 48
>KOG0978 consensus E3 ubiquitin ligase involved in syntaxin degradation [Posttranslational modification, protein turnover, chaperones]
Probab=97.42 E-value=4.5e-05 Score=83.72 Aligned_cols=49 Identities=31% Similarity=0.669 Sum_probs=42.5
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHh-cCCCCCCCCCccCCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~~~~ 336 (512)
.-..|+.|-+..++.+.+.|||+||..|+++-+. ++..||.|.+...+.
T Consensus 642 ~~LkCs~Cn~R~Kd~vI~kC~H~FC~~Cvq~r~etRqRKCP~Cn~aFgan 691 (698)
T KOG0978|consen 642 ELLKCSVCNTRWKDAVITKCGHVFCEECVQTRYETRQRKCPKCNAAFGAN 691 (698)
T ss_pred hceeCCCccCchhhHHHHhcchHHHHHHHHHHHHHhcCCCCCCCCCCCcc
Confidence 3478999999999999999999999999999885 477899998887543
No 49
>KOG2879 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.39 E-value=0.00053 Score=66.67 Aligned_cols=51 Identities=29% Similarity=0.621 Sum_probs=41.8
Q ss_pred cccCCCCcccccccccccCeEe-ccCcccChhhHHHHHhc--CCCCCCCCCccC
Q 010385 284 ELDASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER--QHTCPTCRALVV 334 (512)
Q Consensus 284 ~~~~~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~--~~~CP~Cr~~~~ 334 (512)
.....+.+|++|-+....|-.. +|||++|..|+..=... ..+||.|..++.
T Consensus 234 s~~t~~~~C~~Cg~~PtiP~~~~~C~HiyCY~Ci~ts~~~~asf~Cp~Cg~~~~ 287 (298)
T KOG2879|consen 234 STGTSDTECPVCGEPPTIPHVIGKCGHIYCYYCIATSRLWDASFTCPLCGENVE 287 (298)
T ss_pred ccccCCceeeccCCCCCCCeeeccccceeehhhhhhhhcchhhcccCccCCCCc
Confidence 3446788999999999999765 69999999999886543 478999987765
No 50
>KOG0311 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.38 E-value=3e-05 Score=77.62 Aligned_cols=50 Identities=28% Similarity=0.589 Sum_probs=42.3
Q ss_pred CCCcccccccccccCeEec-cCcccChhhHHHHHh-cCCCCCCCCCccCCCC
Q 010385 288 SDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLE-RQHTCPTCRALVVPPE 337 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~~~~~ 337 (512)
.+..|.||++.++....++ |+|-||..||..-+. .++.||.||+.+....
T Consensus 42 ~~v~c~icl~llk~tmttkeClhrfc~~ci~~a~r~gn~ecptcRk~l~Skr 93 (381)
T KOG0311|consen 42 IQVICPICLSLLKKTMTTKECLHRFCFDCIWKALRSGNNECPTCRKKLVSKR 93 (381)
T ss_pred hhhccHHHHHHHHhhcccHHHHHHHHHHHHHHHHHhcCCCCchHHhhccccc
Confidence 4678999999998887665 999999999988764 4889999999987544
No 51
>KOG1039 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.24 E-value=0.00014 Score=74.29 Aligned_cols=47 Identities=32% Similarity=0.815 Sum_probs=37.9
Q ss_pred CCCCcccccccccccCe-----E---eccCcccChhhHHHHHh--c-----CCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTTAK-----K---LICGHLFHVHCLRSWLE--R-----QHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-----~---l~C~H~fh~~Cl~~wl~--~-----~~~CP~Cr~~~ 333 (512)
..+.+|.||+|...+.. . .+|.|.||..|++.|-. + .+.||.||...
T Consensus 159 s~~k~CGICme~i~ek~~~~~rfgilpnC~H~~Cl~Cir~wr~~~q~~~~~sksCP~CRv~s 220 (344)
T KOG1039|consen 159 SSEKECGICMETINEKAASERRFGILPNCNHSFCLNCIRKWRQATQFESKTSKSCPFCRVPS 220 (344)
T ss_pred cccccceehhhhccccchhhhhcccCCCcchhhhhcHhHhhhhhhccccccccCCCcccCcc
Confidence 45789999999876554 2 45999999999999983 3 46799999765
No 52
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=97.21 E-value=0.0002 Score=72.99 Aligned_cols=45 Identities=42% Similarity=0.988 Sum_probs=37.4
Q ss_pred CCcccccccccccC-----eEeccCcccChhhHHHHHhc--CCCCCCCCCcc
Q 010385 289 DSTCIICREEMTTA-----KKLICGHLFHVHCLRSWLER--QHTCPTCRALV 333 (512)
Q Consensus 289 ~~~C~IC~~~~~~~-----~~l~C~H~fh~~Cl~~wl~~--~~~CP~Cr~~~ 333 (512)
..+|+||+|.++.+ +.+.|||.|...|+++|+.+ ...||.|..+-
T Consensus 4 g~tcpiclds~~~~g~hr~vsl~cghlFgs~cie~wl~k~~~~~cp~c~~ka 55 (463)
T KOG1645|consen 4 GTTCPICLDSYTTAGNHRIVSLQCGHLFGSQCIEKWLGKKTKMQCPLCSGKA 55 (463)
T ss_pred cccCceeeeeeeecCceEEeeecccccccHHHHHHHHhhhhhhhCcccCChh
Confidence 56899999999876 35689999999999999953 44699997654
No 53
>COG5222 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=97.05 E-value=0.00037 Score=68.10 Aligned_cols=43 Identities=28% Similarity=0.719 Sum_probs=37.5
Q ss_pred CCcccccccccccCeEec-cCcccChhhHHHHH-hcCCCCCCCCC
Q 010385 289 DSTCIICREEMTTAKKLI-CGHLFHVHCLRSWL-ERQHTCPTCRA 331 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl-~~~~~CP~Cr~ 331 (512)
...|+.|-.....+.++| |+|.||.+||..-| +....||.|..
T Consensus 274 ~LkCplc~~Llrnp~kT~cC~~~fc~eci~~al~dsDf~CpnC~r 318 (427)
T COG5222 274 SLKCPLCHCLLRNPMKTPCCGHTFCDECIGTALLDSDFKCPNCSR 318 (427)
T ss_pred cccCcchhhhhhCcccCccccchHHHHHHhhhhhhccccCCCccc
Confidence 378999999999999996 79999999999755 67889999944
No 54
>KOG1941 consensus Acetylcholine receptor-associated protein of the synapse (rapsyn) [Extracellular structures]
Probab=97.01 E-value=0.0012 Score=67.02 Aligned_cols=46 Identities=37% Similarity=0.908 Sum_probs=36.8
Q ss_pred CCCcccccccccccC----eEeccCcccChhhHHHHHhc--CCCCCCCCCcc
Q 010385 288 SDSTCIICREEMTTA----KKLICGHLFHVHCLRSWLER--QHTCPTCRALV 333 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~----~~l~C~H~fh~~Cl~~wl~~--~~~CP~Cr~~~ 333 (512)
.+..|..|-+.+-.. .-|||.|+||..|+...|++ .++||.||+-.
T Consensus 364 ~~L~Cg~CGe~~Glk~e~LqALpCsHIfH~rCl~e~L~~n~~rsCP~Crklr 415 (518)
T KOG1941|consen 364 TELYCGLCGESIGLKNERLQALPCSHIFHLRCLQEILENNGTRSCPNCRKLR 415 (518)
T ss_pred HhhhhhhhhhhhcCCcccccccchhHHHHHHHHHHHHHhCCCCCCccHHHHH
Confidence 367899998877432 36799999999999999976 56799999433
No 55
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.00 E-value=0.00067 Score=75.02 Aligned_cols=67 Identities=22% Similarity=0.564 Sum_probs=51.4
Q ss_pred HHHHHHHHhhhhcCCCCCcccccCCCCcccccccccccC-eEeccCcccChhhHHHHHhcCCCCCCCCCcc
Q 010385 264 VRYRKITSNMNDRFPDASPEELDASDSTCIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTCRALV 333 (512)
Q Consensus 264 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~IC~~~~~~~-~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~ 333 (512)
.+|++-.+++++.+.+....+..-....|..|.-.++.| +...|||.||.+|+. .....||.|+.+.
T Consensus 815 e~yk~~i~e~r~~l~~lr~sa~i~q~skCs~C~~~LdlP~VhF~CgHsyHqhC~e---~~~~~CP~C~~e~ 882 (933)
T KOG2114|consen 815 EVYKKDIEEKRQELETLRTSAQIFQVSKCSACEGTLDLPFVHFLCGHSYHQHCLE---DKEDKCPKCLPEL 882 (933)
T ss_pred HHHHHHHHHHHHHHHHhhcccceeeeeeecccCCccccceeeeecccHHHHHhhc---cCcccCCccchhh
Confidence 356666777777776666555444557999999999988 467999999999997 4567899998743
No 56
>COG5152 Uncharacterized conserved protein, contains RING and CCCH-type Zn-fingers [General function prediction only]
Probab=96.97 E-value=0.00029 Score=65.05 Aligned_cols=47 Identities=21% Similarity=0.476 Sum_probs=42.3
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
-...|.||-++++.|+.+.|||.||..|...-......|-+|.+...
T Consensus 195 IPF~C~iCKkdy~spvvt~CGH~FC~~Cai~~y~kg~~C~~Cgk~t~ 241 (259)
T COG5152 195 IPFLCGICKKDYESPVVTECGHSFCSLCAIRKYQKGDECGVCGKATY 241 (259)
T ss_pred CceeehhchhhccchhhhhcchhHHHHHHHHHhccCCcceecchhhc
Confidence 35789999999999999999999999999998888899999977653
No 57
>KOG0297 consensus TNF receptor-associated factor [Signal transduction mechanisms]
Probab=96.88 E-value=0.0005 Score=72.38 Aligned_cols=53 Identities=28% Similarity=0.619 Sum_probs=46.5
Q ss_pred CCCCcccccccccccCeE-eccCcccChhhHHHHHhcCCCCCCCCCccCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQHTCPTCRALVVPPENG 339 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~-l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~~~ 339 (512)
..+..|++|...+.+|.. +.|||.||..|+..|+..++.||.|+..+...+..
T Consensus 19 ~~~l~C~~C~~vl~~p~~~~~cgh~fC~~C~~~~~~~~~~cp~~~~~~~~~~~~ 72 (391)
T KOG0297|consen 19 DENLLCPICMSVLRDPVQTTTCGHRFCAGCLLESLSNHQKCPVCRQELTQAEEL 72 (391)
T ss_pred cccccCccccccccCCCCCCCCCCcccccccchhhccCcCCcccccccchhhcc
Confidence 456789999999999998 59999999999999999999999999888654443
No 58
>KOG1002 consensus Nucleotide excision repair protein RAD16 [Replication, recombination and repair]
Probab=96.81 E-value=0.0015 Score=68.59 Aligned_cols=48 Identities=23% Similarity=0.598 Sum_probs=42.0
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhc-----CCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-----QHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-----~~~CP~Cr~~~~~ 335 (512)
+...|.+|-|.-+++....|.|.||.-|++++.+. +.+||.|...+.-
T Consensus 535 ~~~~C~lc~d~aed~i~s~ChH~FCrlCi~eyv~~f~~~~nvtCP~C~i~Lsi 587 (791)
T KOG1002|consen 535 GEVECGLCHDPAEDYIESSCHHKFCRLCIKEYVESFMENNNVTCPVCHIGLSI 587 (791)
T ss_pred CceeecccCChhhhhHhhhhhHHHHHHHHHHHHHhhhcccCCCCccccccccc
Confidence 45689999999999999999999999999998864 5689999877754
No 59
>KOG1813 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.00052 Score=67.39 Aligned_cols=48 Identities=23% Similarity=0.459 Sum_probs=42.9
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
-.+.|-||...+..|+++.|+|.||..|...-++....|++|.+.+..
T Consensus 240 ~Pf~c~icr~~f~~pVvt~c~h~fc~~ca~~~~qk~~~c~vC~~~t~g 287 (313)
T KOG1813|consen 240 LPFKCFICRKYFYRPVVTKCGHYFCEVCALKPYQKGEKCYVCSQQTHG 287 (313)
T ss_pred CCccccccccccccchhhcCCceeehhhhccccccCCcceeccccccc
Confidence 357799999999999999999999999998888888899999887643
No 60
>KOG3970 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.74 E-value=0.0024 Score=60.22 Aligned_cols=54 Identities=31% Similarity=0.770 Sum_probs=43.9
Q ss_pred CCcccccccccccC--eEeccCcccChhhHHHHHhc--------CCCCCCCCCccCCCCCCCCC
Q 010385 289 DSTCIICREEMTTA--KKLICGHLFHVHCLRSWLER--------QHTCPTCRALVVPPENGAST 342 (512)
Q Consensus 289 ~~~C~IC~~~~~~~--~~l~C~H~fh~~Cl~~wl~~--------~~~CP~Cr~~~~~~~~~~~~ 342 (512)
+..|..|-..+..+ .+|.|-|.||++|+.+|-.+ ...||-|..+|+++.+..++
T Consensus 50 ~pNC~LC~t~La~gdt~RLvCyhlfHW~ClneraA~lPanTAPaGyqCP~Cs~eiFPp~NlvsP 113 (299)
T KOG3970|consen 50 NPNCRLCNTPLASGDTTRLVCYHLFHWKCLNERAANLPANTAPAGYQCPCCSQEIFPPINLVSP 113 (299)
T ss_pred CCCCceeCCccccCcceeehhhhhHHHHHhhHHHhhCCCcCCCCcccCCCCCCccCCCccccch
Confidence 45799998888765 47789999999999999865 34699999999987665554
No 61
>KOG4692 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.67 E-value=0.0018 Score=64.89 Aligned_cols=49 Identities=24% Similarity=0.451 Sum_probs=45.4
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.+++.|+||+......+..||+|.-|..||.+-+...+.|=.|+..+..
T Consensus 420 sEd~lCpICyA~pi~Avf~PC~H~SC~~CI~qHlmN~k~CFfCktTv~~ 468 (489)
T KOG4692|consen 420 SEDNLCPICYAGPINAVFAPCSHRSCYGCITQHLMNCKRCFFCKTTVID 468 (489)
T ss_pred cccccCcceecccchhhccCCCCchHHHHHHHHHhcCCeeeEecceeee
Confidence 5688999999999999999999999999999999999999999998864
No 62
>PF11789 zf-Nse: Zinc-finger of the MIZ type in Nse subunit; PDB: 2YU4_A 3HTK_C.
Probab=96.54 E-value=0.00098 Score=50.25 Aligned_cols=41 Identities=24% Similarity=0.573 Sum_probs=29.2
Q ss_pred CCCcccccccccccCeEe-ccCcccChhhHHHHHhc--CCCCCC
Q 010385 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER--QHTCPT 328 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~--~~~CP~ 328 (512)
....|+|....+++|++- .|||.|-++.|.+|+.+ ...||.
T Consensus 10 ~~~~CPiT~~~~~~PV~s~~C~H~fek~aI~~~i~~~~~~~CPv 53 (57)
T PF11789_consen 10 ISLKCPITLQPFEDPVKSKKCGHTFEKEAILQYIQRNGSKRCPV 53 (57)
T ss_dssp --SB-TTTSSB-SSEEEESSS--EEEHHHHHHHCTTTS-EE-SC
T ss_pred eccCCCCcCChhhCCcCcCCCCCeecHHHHHHHHHhcCCCCCCC
Confidence 467899999999999875 89999999999999944 446998
No 63
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=96.54 E-value=0.00053 Score=74.77 Aligned_cols=31 Identities=29% Similarity=0.544 Sum_probs=27.8
Q ss_pred EeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 304 KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 304 ~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
..+|+|.||..|+..|-...++||+||....
T Consensus 141 ~k~c~H~FC~~Ci~sWsR~aqTCPiDR~EF~ 171 (1134)
T KOG0825|consen 141 EKHTAHYFCEECVGSWSRCAQTCPVDRGEFG 171 (1134)
T ss_pred ccccccccHHHHhhhhhhhcccCchhhhhhh
Confidence 3469999999999999999999999998764
No 64
>KOG1571 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.48 E-value=0.0036 Score=63.45 Aligned_cols=45 Identities=27% Similarity=0.674 Sum_probs=35.1
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...+.|.||.++.++.+.+||||.-| |..- -+...+||+||..+.
T Consensus 303 ~~p~lcVVcl~e~~~~~fvpcGh~cc--ct~c-s~~l~~CPvCR~rI~ 347 (355)
T KOG1571|consen 303 PQPDLCVVCLDEPKSAVFVPCGHVCC--CTLC-SKHLPQCPVCRQRIR 347 (355)
T ss_pred CCCCceEEecCCccceeeecCCcEEE--chHH-HhhCCCCchhHHHHH
Confidence 45678999999999999999999855 5433 233556999998763
No 65
>KOG4275 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=96.44 E-value=0.00063 Score=66.50 Aligned_cols=42 Identities=31% Similarity=0.748 Sum_probs=35.7
Q ss_pred CCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
+..|+||+|...+...|+|||. -|.+|-+. -+.||+||+.+.
T Consensus 300 ~~LC~ICmDaP~DCvfLeCGHmVtCt~CGkr----m~eCPICRqyi~ 342 (350)
T KOG4275|consen 300 RRLCAICMDAPRDCVFLECGHMVTCTKCGKR----MNECPICRQYIV 342 (350)
T ss_pred HHHHHHHhcCCcceEEeecCcEEeehhhccc----cccCchHHHHHH
Confidence 6789999999999999999995 78888654 347999998764
No 66
>KOG2660 consensus Locus-specific chromosome binding proteins [Function unknown]
Probab=96.17 E-value=0.0014 Score=65.57 Aligned_cols=47 Identities=30% Similarity=0.697 Sum_probs=41.8
Q ss_pred CCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
..+|.+|...+.++..+ -|-|.||++||.+.++....||.|...+..
T Consensus 15 ~itC~LC~GYliDATTI~eCLHTFCkSCivk~l~~~~~CP~C~i~ih~ 62 (331)
T KOG2660|consen 15 HITCRLCGGYLIDATTITECLHTFCKSCIVKYLEESKYCPTCDIVIHK 62 (331)
T ss_pred ceehhhccceeecchhHHHHHHHHHHHHHHHHHHHhccCCccceeccC
Confidence 46899999999998755 599999999999999999999999887753
No 67
>PHA02825 LAP/PHD finger-like protein; Provisional
Probab=95.99 E-value=0.0053 Score=55.34 Aligned_cols=49 Identities=24% Similarity=0.682 Sum_probs=37.0
Q ss_pred cCCCCcccccccccccCeEeccCc-----ccChhhHHHHHhc--CCCCCCCCCccCC
Q 010385 286 DASDSTCIICREEMTTAKKLICGH-----LFHVHCLRSWLER--QHTCPTCRALVVP 335 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~C~H-----~fh~~Cl~~wl~~--~~~CP~Cr~~~~~ 335 (512)
...+..|-||.++.. +..-||+- .-|.+|+++|+.. ...|+.|+.+..-
T Consensus 5 s~~~~~CRIC~~~~~-~~~~PC~CkGs~k~VH~sCL~rWi~~s~~~~CeiC~~~Y~i 60 (162)
T PHA02825 5 SLMDKCCWICKDEYD-VVTNYCNCKNENKIVHKECLEEWINTSKNKSCKICNGPYNI 60 (162)
T ss_pred CCCCCeeEecCCCCC-CccCCcccCCCchHHHHHHHHHHHhcCCCCcccccCCeEEE
Confidence 345779999999865 33457653 4599999999965 5579999988753
No 68
>PF14447 Prok-RING_4: Prokaryotic RING finger family 4
Probab=95.86 E-value=0.005 Score=45.47 Aligned_cols=45 Identities=29% Similarity=0.598 Sum_probs=37.1
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...|..|...-.....+||||.-|..|..-+ +-+.||.|.+++..
T Consensus 7 ~~~~~~~~~~~~~~~~~pCgH~I~~~~f~~~--rYngCPfC~~~~~~ 51 (55)
T PF14447_consen 7 EQPCVFCGFVGTKGTVLPCGHLICDNCFPGE--RYNGCPFCGTPFEF 51 (55)
T ss_pred ceeEEEccccccccccccccceeeccccChh--hccCCCCCCCcccC
Confidence 4568888888888899999999999997664 56679999888754
No 69
>PHA02862 5L protein; Provisional
Probab=95.75 E-value=0.0055 Score=54.17 Aligned_cols=45 Identities=22% Similarity=0.775 Sum_probs=35.5
Q ss_pred CCcccccccccccCeEeccC-----cccChhhHHHHHhc--CCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICG-----HLFHVHCLRSWLER--QHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~-----H~fh~~Cl~~wl~~--~~~CP~Cr~~~~ 334 (512)
++.|-||.++-++. .-||+ ..-|.+|+.+|+.. +..||.|+.+..
T Consensus 2 ~diCWIC~~~~~e~-~~PC~C~GS~K~VHq~CL~~WIn~S~k~~CeLCkteY~ 53 (156)
T PHA02862 2 SDICWICNDVCDER-NNFCGCNEEYKVVHIKCMQLWINYSKKKECNLCKTKYN 53 (156)
T ss_pred CCEEEEecCcCCCC-cccccccCcchhHHHHHHHHHHhcCCCcCccCCCCeEE
Confidence 46899999986544 46775 35899999999964 567999999875
No 70
>KOG2932 consensus E3 ubiquitin ligase involved in ubiquitination of E-cadherin complex [Posttranslational modification, protein turnover, chaperones]
Probab=95.68 E-value=0.087 Score=52.30 Aligned_cols=43 Identities=28% Similarity=0.682 Sum_probs=30.5
Q ss_pred Ccccccccccc-cCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 290 STCIICREEMT-TAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 290 ~~C~IC~~~~~-~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
-.|.-|--... -++.+||+|+||.+|.+. ...+.||.|-..+.
T Consensus 91 HfCd~Cd~PI~IYGRmIPCkHvFCl~CAr~--~~dK~Cp~C~d~Vq 134 (389)
T KOG2932|consen 91 HFCDRCDFPIAIYGRMIPCKHVFCLECARS--DSDKICPLCDDRVQ 134 (389)
T ss_pred EeecccCCcceeeecccccchhhhhhhhhc--CccccCcCcccHHH
Confidence 45666644433 246779999999999754 45778999977664
No 71
>COG5236 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=95.57 E-value=0.0089 Score=59.88 Aligned_cols=56 Identities=29% Similarity=0.579 Sum_probs=45.9
Q ss_pred CCCcccccCCCCcccccccccccCeEeccCcccChhhHHHH--HhcCCCCCCCCCccC
Q 010385 279 DASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSW--LERQHTCPTCRALVV 334 (512)
Q Consensus 279 ~~~~~~~~~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~w--l~~~~~CP~Cr~~~~ 334 (512)
+.+.++.++++..|.||.+...-...+||+|..|--|--+. |..++.||+||.+..
T Consensus 51 tsSaddtDEen~~C~ICA~~~TYs~~~PC~H~~CH~Ca~RlRALY~~K~C~~CrTE~e 108 (493)
T COG5236 51 TSSADDTDEENMNCQICAGSTTYSARYPCGHQICHACAVRLRALYMQKGCPLCRTETE 108 (493)
T ss_pred cccccccccccceeEEecCCceEEEeccCCchHHHHHHHHHHHHHhccCCCccccccc
Confidence 34455666777899999999988899999999999997663 566889999998763
No 72
>KOG1428 consensus Inhibitor of type V adenylyl cyclases/Neuronal presynaptic protein Highwire/PAM/RPM-1 [Signal transduction mechanisms]
Probab=95.38 E-value=0.0086 Score=69.22 Aligned_cols=48 Identities=38% Similarity=0.859 Sum_probs=38.9
Q ss_pred CCCCcccccccccc---cCeEeccCcccChhhHHHHHhcC----------CCCCCCCCccC
Q 010385 287 ASDSTCIICREEMT---TAKKLICGHLFHVHCLRSWLERQ----------HTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~---~~~~l~C~H~fh~~Cl~~wl~~~----------~~CP~Cr~~~~ 334 (512)
..|+.|.||..+-- ...+|.|+|+||..|.++.|++. -+||+|+.++.
T Consensus 3484 D~DDmCmICFTE~L~AAP~IqL~C~HiFHlqC~R~vLE~RW~GPRItF~FisCPiC~n~In 3544 (3738)
T KOG1428|consen 3484 DADDMCMICFTEALSAAPAIQLDCSHIFHLQCCRRVLENRWLGPRITFGFISCPICKNKIN 3544 (3738)
T ss_pred ccCceEEEEehhhhCCCcceecCCccchhHHHHHHHHHhcccCCeeEEeeeecccccchhh
Confidence 46789999987753 34689999999999999888762 26999999885
No 73
>KOG0826 consensus Predicted E3 ubiquitin ligase involved in peroxisome organization [Posttranslational modification, protein turnover, chaperones]
Probab=95.35 E-value=1.2 Score=44.87 Aligned_cols=48 Identities=19% Similarity=0.416 Sum_probs=40.9
Q ss_pred cCCCCcccccccccccCeEec-cCcccChhhHHHHHhcCCCCCCCCCcc
Q 010385 286 DASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQHTCPTCRALV 333 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl~~~~~CP~Cr~~~ 333 (512)
......|++|+..-.+|..+. -|-+||..|+-+.+..++.||+-..+.
T Consensus 297 ~~~~~~CpvClk~r~Nptvl~vSGyVfCY~Ci~~Yv~~~~~CPVT~~p~ 345 (357)
T KOG0826|consen 297 PPDREVCPVCLKKRQNPTVLEVSGYVFCYPCIFSYVVNYGHCPVTGYPA 345 (357)
T ss_pred CCccccChhHHhccCCCceEEecceEEeHHHHHHHHHhcCCCCccCCcc
Confidence 345678999999999887776 499999999999999999999876554
No 74
>PF10367 Vps39_2: Vacuolar sorting protein 39 domain 2; InterPro: IPR019453 This entry represents a domain found in the vacuolar sorting protein Vps39 and transforming growth factor beta receptor-associated protein Trap1. Vps39, a component of the C-Vps complex, is thought to be required for the fusion of endosomes and other types of transport intermediates with the vacuole [, ]. In Saccharomyces cerevisiae (Baker's yeast), Vps39 has been shown to stimulate nucleotide exchange []. Trap1 plays a role in the TGF-beta/activin signaling pathway. It associates with inactive heteromeric TGF-beta and activin receptor complexes, mainly through the type II receptor, and is released upon activation of signaling [, ]. The precise function of this domain has not been characterised In Vps39 this domain is involved in localisation and in mediating the interactions with Vps11 [].
Probab=95.20 E-value=0.033 Score=47.25 Aligned_cols=31 Identities=23% Similarity=0.794 Sum_probs=25.7
Q ss_pred CCCCcccccccccccCe--EeccCcccChhhHH
Q 010385 287 ASDSTCIICREEMTTAK--KLICGHLFHVHCLR 317 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~--~l~C~H~fh~~Cl~ 317 (512)
..+..|++|-..+.... ..||||++|..|++
T Consensus 76 ~~~~~C~vC~k~l~~~~f~~~p~~~v~H~~C~~ 108 (109)
T PF10367_consen 76 TESTKCSVCGKPLGNSVFVVFPCGHVVHYSCIK 108 (109)
T ss_pred CCCCCccCcCCcCCCceEEEeCCCeEEeccccc
Confidence 34668999999987764 56999999999975
No 75
>PF12906 RINGv: RING-variant domain; PDB: 2D8S_A 1VYX_A.
Probab=94.84 E-value=0.016 Score=41.85 Aligned_cols=38 Identities=29% Similarity=0.780 Sum_probs=26.2
Q ss_pred ccccccccccCe--EeccC-----cccChhhHHHHHhc--CCCCCCC
Q 010385 292 CIICREEMTTAK--KLICG-----HLFHVHCLRSWLER--QHTCPTC 329 (512)
Q Consensus 292 C~IC~~~~~~~~--~l~C~-----H~fh~~Cl~~wl~~--~~~CP~C 329 (512)
|-||++.-++.. ..||+ -.-|.+|+++|+.. +.+|++|
T Consensus 1 CrIC~~~~~~~~~li~pC~C~Gs~~~vH~~CL~~W~~~~~~~~C~~C 47 (47)
T PF12906_consen 1 CRICLEGEEEDEPLISPCRCKGSMKYVHRSCLERWIRESGNRKCEIC 47 (47)
T ss_dssp ETTTTEE-SSSS-EE-SSS-SSCCGSEECCHHHHHHHHHT-SB-TTT
T ss_pred CeEeCCcCCCCCceecccccCCCcchhHHHHHHHHHHhcCCCcCCCC
Confidence 779998876543 55764 35899999999974 5679987
No 76
>KOG1814 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.49 E-value=0.018 Score=59.31 Aligned_cols=47 Identities=32% Similarity=0.531 Sum_probs=35.7
Q ss_pred cCCCCccccccccccc---CeEeccCcccChhhHHHHHhc--------CCCCCCCCCc
Q 010385 286 DASDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLER--------QHTCPTCRAL 332 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~---~~~l~C~H~fh~~Cl~~wl~~--------~~~CP~Cr~~ 332 (512)
......|.||+++..- -+.+||+|+||+.|++..... .-.||-|...
T Consensus 181 ~~slf~C~ICf~e~~G~~c~~~lpC~Hv~Ck~C~kdY~~~~i~eg~v~~l~Cp~~~C~ 238 (445)
T KOG1814|consen 181 VNSLFDCCICFEEQMGQHCFKFLPCSHVFCKSCLKDYFTIQIQEGQVSCLKCPDPKCG 238 (445)
T ss_pred HhhcccceeeehhhcCcceeeecccchHHHHHHHHHHHHHhhhcceeeeecCCCCCCc
Confidence 3456789999998754 368899999999999998753 2248766554
No 77
>KOG4445 consensus Uncharacterized conserved protein, contains RWD domain [Function unknown]
Probab=94.47 E-value=0.01 Score=58.49 Aligned_cols=50 Identities=30% Similarity=0.769 Sum_probs=37.9
Q ss_pred CCcccccccccccC---eEeccCcccChhhHHHHHhc-----------------------CCCCCCCCCccCCCCC
Q 010385 289 DSTCIICREEMTTA---KKLICGHLFHVHCLRSWLER-----------------------QHTCPTCRALVVPPEN 338 (512)
Q Consensus 289 ~~~C~IC~~~~~~~---~~l~C~H~fh~~Cl~~wl~~-----------------------~~~CP~Cr~~~~~~~~ 338 (512)
...|.||+--|.+. .+++|-|.||..|+-+.|.. .-.||+||..|....+
T Consensus 115 ~gqCvICLygfa~~~~ft~T~C~Hy~H~~ClaRyl~~~~~~lrqe~q~~~~~~qh~~~~~eavcpVcre~i~~e~~ 190 (368)
T KOG4445|consen 115 NGQCVICLYGFASSPAFTVTACDHYMHFACLARYLTECLTGLRQEIQDAQKERQHMKEQVEAVCPVCRERIKIEEN 190 (368)
T ss_pred CCceEEEEEeecCCCceeeehhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhHhhhhhHhhhhcccccc
Confidence 45799988777654 47899999999999887642 1249999999975443
No 78
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=94.05 E-value=0.037 Score=53.14 Aligned_cols=50 Identities=14% Similarity=0.331 Sum_probs=41.9
Q ss_pred CCCcccccccccccCe----EeccCcccChhhHHHHHhcCCCCCCCCCccCCCC
Q 010385 288 SDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~----~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~ 337 (512)
....|++|.+.+.+.. .-||||+++.+|..+.+.....||+|-.++.+.+
T Consensus 220 ~ryiCpvtrd~LtNt~~ca~Lr~sg~Vv~~ecvEklir~D~v~pv~d~plkdrd 273 (303)
T KOG3039|consen 220 KRYICPVTRDTLTNTTPCAVLRPSGHVVTKECVEKLIRKDMVDPVTDKPLKDRD 273 (303)
T ss_pred cceecccchhhhcCccceEEeccCCcEeeHHHHHHhccccccccCCCCcCcccc
Confidence 4568999999998653 3389999999999999999999999988886543
No 79
>KOG3268 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=94.05 E-value=0.031 Score=51.02 Aligned_cols=46 Identities=30% Similarity=0.763 Sum_probs=32.7
Q ss_pred CcccccccccccC-------eEeccCcccChhhHHHHHhc----C-------CCCCCCCCccCC
Q 010385 290 STCIICREEMTTA-------KKLICGHLFHVHCLRSWLER----Q-------HTCPTCRALVVP 335 (512)
Q Consensus 290 ~~C~IC~~~~~~~-------~~l~C~H~fh~~Cl~~wl~~----~-------~~CP~Cr~~~~~ 335 (512)
..|.||+..--++ .-..||.-||.-|+..||.. . ..||+|..++..
T Consensus 166 ~~cgicyayqldGTipDqtCdN~qCgkpFHqiCL~dWLRgilTsRQSFdiiFGeCPYCS~Pial 229 (234)
T KOG3268|consen 166 GACGICYAYQLDGTIPDQTCDNIQCGKPFHQICLTDWLRGILTSRQSFDIIFGECPYCSDPIAL 229 (234)
T ss_pred hcccceeeeecCCccccccccccccCCcHHHHHHHHHHHHHhhccceeeeeeccCCCCCCccee
Confidence 4577776543222 23469999999999999965 1 249999888753
No 80
>PF14570 zf-RING_4: RING/Ubox like zinc-binding domain; PDB: 1E4U_A 1UR6_B.
Probab=94.01 E-value=0.031 Score=40.32 Aligned_cols=42 Identities=31% Similarity=0.706 Sum_probs=21.3
Q ss_pred ccccccccccC--eEe--ccCcccChhhHHHHHh-cCCCCCCCCCcc
Q 010385 292 CIICREEMTTA--KKL--ICGHLFHVHCLRSWLE-RQHTCPTCRALV 333 (512)
Q Consensus 292 C~IC~~~~~~~--~~l--~C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~ 333 (512)
|++|.+++... ... +||+..|..|...-++ .+..||-||++.
T Consensus 1 cp~C~e~~d~~d~~~~PC~Cgf~IC~~C~~~i~~~~~g~CPgCr~~Y 47 (48)
T PF14570_consen 1 CPLCDEELDETDKDFYPCECGFQICRFCYHDILENEGGRCPGCREPY 47 (48)
T ss_dssp -TTTS-B--CCCTT--SSTTS----HHHHHHHTTSS-SB-TTT--B-
T ss_pred CCCcccccccCCCccccCcCCCcHHHHHHHHHHhccCCCCCCCCCCC
Confidence 78899988433 234 4899999999998886 477899999864
No 81
>PF10272 Tmpp129: Putative transmembrane protein precursor; InterPro: IPR018801 This entry consists of proteins conserved from worms to humans. They are purported to be transmembrane protein-precursors but their function is unknown.
Probab=93.16 E-value=0.13 Score=53.13 Aligned_cols=48 Identities=27% Similarity=0.718 Sum_probs=32.9
Q ss_pred CCCCcccccccccccCeEe-----------------c-----cCcccChhhHHHHHhc-------------CCCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKL-----------------I-----CGHLFHVHCLRSWLER-------------QHTCPTCRA 331 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-----------------~-----C~H~fh~~Cl~~wl~~-------------~~~CP~Cr~ 331 (512)
++.+.|.-|+..-.+.+.. + |...+|.+|+-+|+.. +-+||+||+
T Consensus 269 ~e~e~CigC~~~~~~vkl~k~C~~~~~~g~~~~~~~~C~~C~CRPmWC~~Cm~kwFasrQd~~~~~~Wl~~~~~CPtCRa 348 (358)
T PF10272_consen 269 QELEPCIGCMQAQPNVKLVKRCADEEQEGSPLPNEPPCQQCYCRPMWCLECMGKWFASRQDQQHPETWLSGKCPCPTCRA 348 (358)
T ss_pred cccCCccccccCCCCcEEEeccCCcccCCcccccCCCCccccccchHHHHHHHHHhhhcCCCCChhhhhcCCCCCCCCcc
Confidence 4566898898764322211 1 5677899999999843 236999999
Q ss_pred ccC
Q 010385 332 LVV 334 (512)
Q Consensus 332 ~~~ 334 (512)
...
T Consensus 349 ~FC 351 (358)
T PF10272_consen 349 KFC 351 (358)
T ss_pred cce
Confidence 864
No 82
>KOG0802 consensus E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=93.02 E-value=0.066 Score=59.02 Aligned_cols=60 Identities=33% Similarity=0.798 Sum_probs=50.4
Q ss_pred hcCCCCCcccccCCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCCCCC
Q 010385 275 DRFPDASPEELDASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (512)
Q Consensus 275 ~~~~~~~~~~~~~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~~ 338 (512)
...+..+++++....+.|.+|++++ ..+..+|. |..|+++|+..+..||.|++.....+.
T Consensus 465 ~~~s~~~~~~l~~~~~~~~~~~~~~-~~~~~~~~---~~~~l~~~~~~~~~~pl~~~~~~~~~~ 524 (543)
T KOG0802|consen 465 NSLSEATPSQLREPNDVCAICYQEM-SARITPCS---HALCLRKWLYVQEVCPLCHTYMKEDDF 524 (543)
T ss_pred CCCCCCChhhhhcccCcchHHHHHH-Hhcccccc---chhHHHhhhhhccccCCCchhhhcccc
Confidence 4456667778888889999999999 77778898 899999999999999999998865443
No 83
>PF05290 Baculo_IE-1: Baculovirus immediate-early protein (IE-0); InterPro: IPR007954 This entry contains the Baculovirus immediate-early protein IE-0.
Probab=93.01 E-value=0.22 Score=43.69 Aligned_cols=48 Identities=25% Similarity=0.563 Sum_probs=38.6
Q ss_pred CCCcccccccccccCeEec----cCcccChhhHHH-HHh--cCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLI----CGHLFHVHCLRS-WLE--RQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~----C~H~fh~~Cl~~-wl~--~~~~CP~Cr~~~~~ 335 (512)
.--+|.||.|...+...|. ||-..|.-|.-. |-- .+..||.|+.....
T Consensus 79 ~lYeCnIC~etS~ee~FLKPneCCgY~iCn~Cya~LWK~~~~ypvCPvCkTSFKs 133 (140)
T PF05290_consen 79 KLYECNICKETSAEERFLKPNECCGYSICNACYANLWKFCNLYPVCPVCKTSFKS 133 (140)
T ss_pred CceeccCcccccchhhcCCcccccchHHHHHHHHHHHHHcccCCCCCcccccccc
Confidence 3568999999998888774 999999999877 542 37789999988754
No 84
>PHA03096 p28-like protein; Provisional
Probab=92.97 E-value=0.044 Score=54.96 Aligned_cols=42 Identities=29% Similarity=0.636 Sum_probs=30.3
Q ss_pred CcccccccccccCe-------Ee-ccCcccChhhHHHHHhc---CCCCCCCCC
Q 010385 290 STCIICREEMTTAK-------KL-ICGHLFHVHCLRSWLER---QHTCPTCRA 331 (512)
Q Consensus 290 ~~C~IC~~~~~~~~-------~l-~C~H~fh~~Cl~~wl~~---~~~CP~Cr~ 331 (512)
..|.||++...... .| .|.|.||..|++.|... ..+||.||.
T Consensus 179 k~c~ic~e~~~~k~~~~~~fgil~~c~h~fc~~ci~~wr~~~~~~e~~~~c~~ 231 (284)
T PHA03096 179 KICGICLENIKAKYIIKKYYGILSEIKHEFNIFCIKIWMTESLYKETEPENRR 231 (284)
T ss_pred hhcccchhhhhhhccccccccccccCCcHHHHHHHHHHHHhhhhcccCccccc
Confidence 57999999875431 23 49999999999999854 334555543
No 85
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=92.94 E-value=0.048 Score=54.64 Aligned_cols=47 Identities=26% Similarity=0.573 Sum_probs=35.2
Q ss_pred CCCcccccccccccCeE----eccCcccChhhHHHHHhc-CCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLER-QHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~ 334 (512)
+++.|+.|+|+++...+ -|||.-.|.-|....-+. +..||-||+...
T Consensus 13 eed~cplcie~mditdknf~pc~cgy~ic~fc~~~irq~lngrcpacrr~y~ 64 (480)
T COG5175 13 EEDYCPLCIEPMDITDKNFFPCPCGYQICQFCYNNIRQNLNGRCPACRRKYD 64 (480)
T ss_pred ccccCcccccccccccCCcccCCcccHHHHHHHHHHHhhccCCChHhhhhcc
Confidence 45669999999986543 478888888887665433 668999998764
No 86
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=92.69 E-value=0.067 Score=54.20 Aligned_cols=44 Identities=32% Similarity=0.774 Sum_probs=36.4
Q ss_pred Cccccccccccc------CeEeccCcccChhhHHHHHhc-CCCCCCCCCcc
Q 010385 290 STCIICREEMTT------AKKLICGHLFHVHCLRSWLER-QHTCPTCRALV 333 (512)
Q Consensus 290 ~~C~IC~~~~~~------~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~ 333 (512)
..|.||-+++.. |+.|.|||.+|..|+.+-+.. ...||.||.+.
T Consensus 4 ~~c~~c~~~~s~~~~~~~p~~l~c~h~~c~~c~~~l~~~~~i~cpfcR~~~ 54 (296)
T KOG4185|consen 4 PECEICNEDYSSEDGDHIPRVLKCGHTICQNCASKLLGNSRILCPFCRETT 54 (296)
T ss_pred CceeecCccccccCcccCCcccccCceehHhHHHHHhcCceeeccCCCCcc
Confidence 579999999864 567789999999999887654 45699999985
No 87
>KOG4367 consensus Predicted Zn-finger protein [Function unknown]
Probab=92.59 E-value=0.33 Score=50.34 Aligned_cols=31 Identities=23% Similarity=0.494 Sum_probs=28.0
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHH
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRS 318 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~ 318 (512)
++..|+||-..+++|..|||+|..|..|.+.
T Consensus 3 eelkc~vc~~f~~epiil~c~h~lc~~ca~~ 33 (699)
T KOG4367|consen 3 EELKCPVCGSFYREPIILPCSHNLCQACARN 33 (699)
T ss_pred ccccCceehhhccCceEeecccHHHHHHHHh
Confidence 4668999999999999999999999999764
No 88
>KOG4739 consensus Uncharacterized protein involved in synaptonemal complex formation [Cell cycle control, cell division, chromosome partitioning; General function prediction only]
Probab=92.56 E-value=0.053 Score=52.38 Aligned_cols=44 Identities=23% Similarity=0.496 Sum_probs=29.5
Q ss_pred cccccccccc-cC-eEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 291 TCIICREEMT-TA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 291 ~C~IC~~~~~-~~-~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
-|.-|..--. ++ ..+.|+|+||..|...- ....||+||+++...
T Consensus 5 hCn~C~~~~~~~~f~LTaC~HvfC~~C~k~~--~~~~C~lCkk~ir~i 50 (233)
T KOG4739|consen 5 HCNKCFRFPSQDPFFLTACRHVFCEPCLKAS--SPDVCPLCKKSIRII 50 (233)
T ss_pred EeccccccCCCCceeeeechhhhhhhhcccC--Cccccccccceeeee
Confidence 3555554433 22 35689999999997552 233899999997543
No 89
>KOG1001 consensus Helicase-like transcription factor HLTF/DNA helicase RAD5, DEAD-box superfamily [Transcription; Replication, recombination and repair]
Probab=92.52 E-value=0.042 Score=61.63 Aligned_cols=46 Identities=30% Similarity=0.722 Sum_probs=39.0
Q ss_pred CcccccccccccCeEeccCcccChhhHHHHHhc--CCCCCCCCCccCCC
Q 010385 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLER--QHTCPTCRALVVPP 336 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~--~~~CP~Cr~~~~~~ 336 (512)
..|.||.+ .+.+..++|||.||.+|+..-+.. ...||.||..+...
T Consensus 455 ~~c~ic~~-~~~~~it~c~h~~c~~c~~~~i~~~~~~~~~~cr~~l~~~ 502 (674)
T KOG1001|consen 455 HWCHICCD-LDSFFITRCGHDFCVECLKKSIQQSENAPCPLCRNVLKEK 502 (674)
T ss_pred cccccccc-cccceeecccchHHHHHHHhccccccCCCCcHHHHHHHHH
Confidence 78999999 788889999999999999997754 33699999988643
No 90
>COG5183 SSM4 Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=92.29 E-value=0.081 Score=58.58 Aligned_cols=48 Identities=29% Similarity=0.656 Sum_probs=36.8
Q ss_pred CCCCcccccccccccCeEe--ccCc-----ccChhhHHHHHhc--CCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKL--ICGH-----LFHVHCLRSWLER--QHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l--~C~H-----~fh~~Cl~~wl~~--~~~CP~Cr~~~~ 334 (512)
+++..|.||+.+-.....| ||+. ..|.+|+.+|++. ...|-+|+.++.
T Consensus 10 ~d~~~CRICr~e~~~d~pLfhPCKC~GSIkYiH~eCL~eW~~~s~~~kCdiChy~~~ 66 (1175)
T COG5183 10 EDKRSCRICRTEDIRDDPLFHPCKCSGSIKYIHRECLMEWMECSGTKKCDICHYEYK 66 (1175)
T ss_pred ccchhceeecCCCCCCCcCcccccccchhHHHHHHHHHHHHhcCCCcceeeecceee
Confidence 4457999999886555444 7753 3899999999975 456999998874
No 91
>KOG1952 consensus Transcription factor NF-X1, contains NFX-type Zn2+-binding and R3H domains [Transcription]
Probab=92.00 E-value=0.068 Score=59.69 Aligned_cols=47 Identities=28% Similarity=0.904 Sum_probs=35.4
Q ss_pred CCCCcccccccccccCeEe----ccCcccChhhHHHHHhc-------CCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTTAKKL----ICGHLFHVHCLRSWLER-------QHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l----~C~H~fh~~Cl~~wl~~-------~~~CP~Cr~~~ 333 (512)
....+|.||.+.+..-..+ .|-|+||..||++|-.+ .-.||.|+...
T Consensus 189 ~~~yeCmIC~e~I~~t~~~WSC~sCYhVFHl~CI~~WArs~ek~~~~~WrCP~Cqsv~ 246 (950)
T KOG1952|consen 189 NRKYECMICTERIKRTAPVWSCKSCYHVFHLNCIKKWARSSEKTGQDGWRCPACQSVS 246 (950)
T ss_pred cCceEEEEeeeeccccCCceecchhhhhhhHHHHHHHHHHhhhccCccccCCcccchh
Confidence 4567899999998754322 47899999999999854 22599998433
No 92
>PF07800 DUF1644: Protein of unknown function (DUF1644); InterPro: IPR012866 This family consists of sequences found in a number of hypothetical plant proteins of unknown function. The region of interest contains nine highly conserved cysteine residues and is approximately 160 amino acids in length, which probably represent a zinc-binding domain.
Probab=91.99 E-value=0.15 Score=46.14 Aligned_cols=33 Identities=36% Similarity=0.692 Sum_probs=25.7
Q ss_pred CCcccccccccccCeEec------------cCc-ccChhhHHHHHh
Q 010385 289 DSTCIICREEMTTAKKLI------------CGH-LFHVHCLRSWLE 321 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~------------C~H-~fh~~Cl~~wl~ 321 (512)
+..|+||||...+.+.|- |+. .-|..||++..+
T Consensus 2 d~~CpICme~PHNAVLLlCSS~~kgcRpymc~Ts~rhSNCLdqfkk 47 (162)
T PF07800_consen 2 DVTCPICMEHPHNAVLLLCSSHEKGCRPYMCDTSYRHSNCLDQFKK 47 (162)
T ss_pred CccCceeccCCCceEEEEeccccCCccccccCCccchhHHHHHHHH
Confidence 568999999999998875 332 257899998764
No 93
>PF08746 zf-RING-like: RING-like domain; InterPro: IPR014857 This is a zinc finger domain that is related to the C3HC4 RING finger domain (IPR001841 from INTERPRO). ; PDB: 3NW0_A 2CT0_A.
Probab=91.83 E-value=0.14 Score=36.25 Aligned_cols=38 Identities=26% Similarity=0.857 Sum_probs=23.8
Q ss_pred ccccccccccCeEec---cCcccChhhHHHHHhcCC--CCCCC
Q 010385 292 CIICREEMTTAKKLI---CGHLFHVHCLRSWLERQH--TCPTC 329 (512)
Q Consensus 292 C~IC~~~~~~~~~l~---C~H~fh~~Cl~~wl~~~~--~CP~C 329 (512)
|.+|.+....+.+=+ |+=.+|..|++.++.... .||.|
T Consensus 1 C~~C~~iv~~G~~C~~~~C~~r~H~~C~~~y~r~~~~~~CP~C 43 (43)
T PF08746_consen 1 CEACKEIVTQGQRCSNRDCNVRLHDDCFKKYFRHRSNPKCPNC 43 (43)
T ss_dssp -TTT-SB-SSSEE-SS--S--EE-HHHHHHHTTT-SS-B-TTT
T ss_pred CcccchhHeeeccCCCCccCchHHHHHHHHHHhcCCCCCCcCC
Confidence 678888887776655 888899999999987644 69988
No 94
>KOG1940 consensus Zn-finger protein [General function prediction only]
Probab=90.98 E-value=0.12 Score=51.48 Aligned_cols=42 Identities=36% Similarity=0.802 Sum_probs=35.9
Q ss_pred Ccccccccccc----cCeEeccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 290 STCIICREEMT----TAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 290 ~~C~IC~~~~~----~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
..|+||.+.+. .+..++|||..|..|++.....+-+||+|.+
T Consensus 159 ~ncPic~e~l~~s~~~~~~~~CgH~~h~~cf~e~~~~~y~CP~C~~ 204 (276)
T KOG1940|consen 159 FNCPICKEYLFLSFEDAGVLKCGHYMHSRCFEEMICEGYTCPICSK 204 (276)
T ss_pred CCCchhHHHhccccccCCccCcccchHHHHHHHHhccCCCCCcccc
Confidence 34999998764 4568899999999999998877799999988
No 95
>PF05883 Baculo_RING: Baculovirus U-box/Ring-like domain; InterPro: IPR008573 This family consists of several Baculovirus proteins of around 130 residues in length. The function of this family is unknown, but it appears to be related to the U-box and ring finger domain by profile-profile comparison.
Probab=90.92 E-value=0.11 Score=45.75 Aligned_cols=40 Identities=20% Similarity=0.545 Sum_probs=29.5
Q ss_pred CCccccccccccc--Ce-EeccC------cccChhhHHHHHhcCCCCCC
Q 010385 289 DSTCIICREEMTT--AK-KLICG------HLFHVHCLRSWLERQHTCPT 328 (512)
Q Consensus 289 ~~~C~IC~~~~~~--~~-~l~C~------H~fh~~Cl~~wl~~~~~CP~ 328 (512)
..+|.||++...+ ++ .++|| |.||..|+++|-..++.=|.
T Consensus 26 ~~EC~IC~~~I~~~~GvV~vt~~g~lnLEkmfc~~C~~rw~~~~~rDPf 74 (134)
T PF05883_consen 26 TVECQICFDRIDNNDGVVYVTDGGTLNLEKMFCADCDKRWRRERNRDPF 74 (134)
T ss_pred CeeehhhhhhhhcCCCEEEEecCCeehHHHHHHHHHHHHHHhhccCCCc
Confidence 5689999999987 43 45776 88999999999543333343
No 96
>PF04641 Rtf2: Rtf2 RING-finger
Probab=90.76 E-value=0.23 Score=49.49 Aligned_cols=49 Identities=18% Similarity=0.441 Sum_probs=38.3
Q ss_pred CCCCcccccccccccCe----EeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~----~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
.....|+|+..+|.... ..||||+|...|++.-- ....||+|-.++...
T Consensus 111 ~~~~~CPvt~~~~~~~~~fv~l~~cG~V~s~~alke~k-~~~~Cp~c~~~f~~~ 163 (260)
T PF04641_consen 111 EGRFICPVTGKEFNGKHKFVYLRPCGCVFSEKALKELK-KSKKCPVCGKPFTEE 163 (260)
T ss_pred CceeECCCCCcccCCceeEEEEcCCCCEeeHHHHHhhc-ccccccccCCccccC
Confidence 45678999999995432 33899999999999973 456799998887643
No 97
>KOG0827 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=90.46 E-value=0.028 Score=57.36 Aligned_cols=47 Identities=28% Similarity=0.679 Sum_probs=40.5
Q ss_pred CCcccccccccccC----eEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTA----KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~----~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...|+||.+.++.. ..+.|||..|..||++|+.....||.||.++..
T Consensus 196 v~sl~I~~~slK~~y~k~~~~~~g~~~~~~kL~k~L~~~~kl~~~~rel~~ 246 (465)
T KOG0827|consen 196 VGSLSICFESLKQNYDKISAIVCGHIYHHGKLSKWLATKRKLPSCRRELPK 246 (465)
T ss_pred HhhhHhhHHHHHHHHHHHHHHhhcccchhhHHHHHHHHHHHhHHHHhhhhh
Confidence 46799999887654 466899999999999999998899999999863
No 98
>PF03854 zf-P11: P-11 zinc finger; InterPro: IPR003224 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The RING-finger is a specialised type of Zn-finger of 40 to 60 residues that binds two atoms of zinc, and is probably involved in mediating protein-protein interactions [, , ]. There are two different variants, the C3HC4-type and a C3H2C3-type, which is clearly related despite the different cysteine/histidine pattern. The latter type is sometimes referred to as 'RING-H2 finger'. The RING domain is a protein interaction domain which has been implicated in a range of diverse biological processes. Several 3D-structures for RING-fingers are known [, ]. The 3D structure of the zinc ligation system is unique to the RING domain and is referred to as the 'cross-brace' motif. The spacing of the cysteines in such a domain is: C-x(2)-C-x(9 to 39)-C-x(1 to 3)-H-x(2 to 3)-C-x(2)-C-x(4 to 48)-C-x(2)-C Metal ligand pairs one and three co-ordinate to bind one zinc ion, whilst pairs two and four bind the second. This entry represents RING finger protein Z, a small polypeptide found in some negative-strand RNA viruses including Lassa fever virus, which plays a crucial role in virion assembly and budding. RING finger Z has been shown to interact with several host proteins, including promyelocytic leukemia protein and the eukaryotic translation initiation factor 4E [, ]. It is sufficient in the absence of any other viral proteins to release virus-like particles from the infected cell []. This protein is also responsible for arenavirus superinfection exclusion; expression of this protein in a host cell strongly and specifically inhibits areanavirus transcription and replication []. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0003723 RNA binding, 0008270 zinc ion binding; PDB: 2KO5_A.
Probab=89.98 E-value=0.12 Score=36.97 Aligned_cols=43 Identities=26% Similarity=0.634 Sum_probs=26.3
Q ss_pred cccccccccccCeEeccC-cccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 291 TCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l~C~-H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.|.-|+- .+.-.+.|. |..|..|+...+.+...||+|..+++.
T Consensus 4 nCKsCWf--~~k~Li~C~dHYLCl~CLt~ml~~s~~C~iC~~~LPt 47 (50)
T PF03854_consen 4 NCKSCWF--ANKGLIKCSDHYLCLNCLTLMLSRSDRCPICGKPLPT 47 (50)
T ss_dssp ---SS-S----SSEEE-SS-EEEHHHHHHT-SSSSEETTTTEE---
T ss_pred cChhhhh--cCCCeeeecchhHHHHHHHHHhccccCCCcccCcCcc
Confidence 3555553 344456786 999999999999999999999998864
No 99
>KOG2034 consensus Vacuolar sorting protein PEP3/VPS18 [Intracellular trafficking, secretion, and vesicular transport]
Probab=89.85 E-value=0.35 Score=54.68 Aligned_cols=34 Identities=26% Similarity=0.620 Sum_probs=27.1
Q ss_pred CCCCcccccccccccC--eEeccCcccChhhHHHHH
Q 010385 287 ASDSTCIICREEMTTA--KKLICGHLFHVHCLRSWL 320 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~--~~l~C~H~fh~~Cl~~wl 320 (512)
+.++.|.+|...+-.. .+-||||.||+.|+.+-.
T Consensus 815 ep~d~C~~C~~~ll~~pF~vf~CgH~FH~~Cl~~~v 850 (911)
T KOG2034|consen 815 EPQDSCDHCGRPLLIKPFYVFPCGHCFHRDCLIRHV 850 (911)
T ss_pred cCccchHHhcchhhcCcceeeeccchHHHHHHHHHH
Confidence 3567899998877543 467999999999998754
No 100
>KOG1100 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=89.35 E-value=0.17 Score=48.58 Aligned_cols=40 Identities=35% Similarity=0.645 Sum_probs=32.0
Q ss_pred cccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccC
Q 010385 291 TCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
.|-.|.+.-.....+||.|. +|..|=.. -..||+|+....
T Consensus 160 ~Cr~C~~~~~~VlllPCrHl~lC~~C~~~----~~~CPiC~~~~~ 200 (207)
T KOG1100|consen 160 SCRKCGEREATVLLLPCRHLCLCGICDES----LRICPICRSPKT 200 (207)
T ss_pred cceecCcCCceEEeecccceEeccccccc----CccCCCCcChhh
Confidence 39999998888788999985 89999533 556999987654
No 101
>KOG0298 consensus DEAD box-containing helicase-like transcription factor/DNA repair protein [Replication, recombination and repair]
Probab=88.93 E-value=0.13 Score=60.07 Aligned_cols=45 Identities=27% Similarity=0.638 Sum_probs=40.0
Q ss_pred CCcccccccccc-cCeEeccCcccChhhHHHHHhcCCCCCCCCCcc
Q 010385 289 DSTCIICREEMT-TAKKLICGHLFHVHCLRSWLERQHTCPTCRALV 333 (512)
Q Consensus 289 ~~~C~IC~~~~~-~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~ 333 (512)
...|.||.+.+. .+-...|||.+|..|...|+..+..||.|+...
T Consensus 1153 ~~~c~ic~dil~~~~~I~~cgh~~c~~c~~~~l~~~s~~~~~ksi~ 1198 (1394)
T KOG0298|consen 1153 HFVCEICLDILRNQGGIAGCGHEPCCRCDELWLYASSRCPICKSIK 1198 (1394)
T ss_pred ccchHHHHHHHHhcCCeeeechhHhhhHHHHHHHHhccCcchhhhh
Confidence 458999999998 566789999999999999999999999998544
No 102
>KOG3053 consensus Uncharacterized conserved protein [Function unknown]
Probab=86.62 E-value=0.27 Score=47.75 Aligned_cols=48 Identities=23% Similarity=0.677 Sum_probs=36.4
Q ss_pred CCCCcccccccccccCeE----eccC-----cccChhhHHHHHhcC--------CCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKK----LICG-----HLFHVHCLRSWLERQ--------HTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~----l~C~-----H~fh~~Cl~~wl~~~--------~~CP~Cr~~~~ 334 (512)
+.+..|-||+..-++... -||. |--|..|+..|...+ .+||-|+.+..
T Consensus 18 e~eR~CWiCF~TdeDn~~a~WV~PCrCRGt~KWVHqsCL~rWiDEK~~~n~~q~V~C~QCqTEYi 82 (293)
T KOG3053|consen 18 ELERCCWICFATDEDNRLAAWVHPCRCRGTTKWVHQSCLSRWIDEKQRGNPLQTVSCPQCQTEYI 82 (293)
T ss_pred ccceeEEEEeccCcccchhhhcccccccCccHHHHHHHHHHHHhHHhcCCCCceeechhhcchhe
Confidence 456789999998777653 3663 779999999999542 25999998764
No 103
>KOG2817 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.72 E-value=0.66 Score=47.97 Aligned_cols=45 Identities=27% Similarity=0.554 Sum_probs=34.7
Q ss_pred CCCCccccccccc---ccCeEeccCcccChhhHHHHHhcC---CCCCCCCC
Q 010385 287 ASDSTCIICREEM---TTAKKLICGHLFHVHCLRSWLERQ---HTCPTCRA 331 (512)
Q Consensus 287 ~~~~~C~IC~~~~---~~~~~l~C~H~fh~~Cl~~wl~~~---~~CP~Cr~ 331 (512)
.+-+.|+|=.+.- ..|.+|.|||+.+++-+.+.-... ..||+|=.
T Consensus 332 HSvF~CPVlKeqtsdeNPPm~L~CGHVISkdAlnrLS~ng~~sfKCPYCP~ 382 (394)
T KOG2817|consen 332 HSVFICPVLKEQTSDENPPMMLICGHVISKDALNRLSKNGSQSFKCPYCPV 382 (394)
T ss_pred cceeecccchhhccCCCCCeeeeccceecHHHHHHHhhCCCeeeeCCCCCc
Confidence 3458899977654 357899999999999999976543 46999933
No 104
>KOG3161 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=84.61 E-value=0.35 Score=52.54 Aligned_cols=39 Identities=28% Similarity=0.646 Sum_probs=29.7
Q ss_pred Ccccccccccc----cCeEeccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 290 STCIICREEMT----TAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 290 ~~C~IC~~~~~----~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
..|.||+..+. .|+.+-|||..|.+|+..- .+.+|| |+.
T Consensus 12 l~c~ic~n~f~~~~~~Pvsl~cghtic~~c~~~l--yn~scp-~~~ 54 (861)
T KOG3161|consen 12 LLCDICLNLFVVQRLEPVSLQCGHTICGHCVQLL--YNASCP-TKR 54 (861)
T ss_pred hhchHHHHHHHHHhcCcccccccchHHHHHHHhH--hhccCC-CCc
Confidence 46999988775 4667789999999998764 356788 544
No 105
>KOG3800 consensus Predicted E3 ubiquitin ligase containing RING finger, subunit of transcription/repair factor TFIIH and CDK-activating kinase assembly factor [Posttranslational modification, protein turnover, chaperones]
Probab=83.76 E-value=0.71 Score=45.80 Aligned_cols=43 Identities=23% Similarity=0.647 Sum_probs=31.8
Q ss_pred cccccccccc-cCe-E---eccCcccChhhHHHHHhc-CCCCCCCCCcc
Q 010385 291 TCIICREEMT-TAK-K---LICGHLFHVHCLRSWLER-QHTCPTCRALV 333 (512)
Q Consensus 291 ~C~IC~~~~~-~~~-~---l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~ 333 (512)
.|++|..+-- .|. + -+|+|..|.+|.+..+.. .-.||-|...+
T Consensus 2 ~Cp~CKt~~Y~np~lk~~in~C~H~lCEsCvd~iF~~g~~~CpeC~~iL 50 (300)
T KOG3800|consen 2 ACPKCKTDRYLNPDLKLMINECGHRLCESCVDRIFSLGPAQCPECMVIL 50 (300)
T ss_pred CCcccccceecCccceeeeccccchHHHHHHHHHHhcCCCCCCcccchh
Confidence 5888876532 231 1 289999999999998865 55799997655
No 106
>KOG3002 consensus Zn finger protein [General function prediction only]
Probab=83.48 E-value=0.72 Score=46.73 Aligned_cols=46 Identities=24% Similarity=0.434 Sum_probs=36.4
Q ss_pred CCCCcccccccccccCeE-eccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~-l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.+-.+|+||.+.+..|.. -+=||.-|..|-.+ ..+.||.||.++..
T Consensus 46 ~~lleCPvC~~~l~~Pi~QC~nGHlaCssC~~~---~~~~CP~Cr~~~g~ 92 (299)
T KOG3002|consen 46 LDLLDCPVCFNPLSPPIFQCDNGHLACSSCRTK---VSNKCPTCRLPIGN 92 (299)
T ss_pred hhhccCchhhccCcccceecCCCcEehhhhhhh---hcccCCcccccccc
Confidence 345789999999988853 24489999999653 57789999999973
No 107
>KOG0801 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=82.84 E-value=0.46 Score=42.95 Aligned_cols=29 Identities=28% Similarity=0.760 Sum_probs=23.4
Q ss_pred ccCCCCcccccccccccCe---EeccCcccCh
Q 010385 285 LDASDSTCIICREEMTTAK---KLICGHLFHV 313 (512)
Q Consensus 285 ~~~~~~~C~IC~~~~~~~~---~l~C~H~fh~ 313 (512)
+.....+|.||+|+++... +|||-.++|+
T Consensus 173 L~ddkGECvICLEdL~~GdtIARLPCLCIYHK 204 (205)
T KOG0801|consen 173 LKDDKGECVICLEDLEAGDTIARLPCLCIYHK 204 (205)
T ss_pred hcccCCcEEEEhhhccCCCceeccceEEEeec
Confidence 3445679999999998764 6899999886
No 108
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=81.05 E-value=0.86 Score=50.55 Aligned_cols=24 Identities=33% Similarity=0.981 Sum_probs=21.8
Q ss_pred eccCcccChhhHHHHHhcCCCCCC
Q 010385 305 LICGHLFHVHCLRSWLERQHTCPT 328 (512)
Q Consensus 305 l~C~H~fh~~Cl~~wl~~~~~CP~ 328 (512)
..|+|+.|.+|.+.|++....||.
T Consensus 1046 g~C~Hv~H~sc~~eWf~~gd~Cps 1069 (1081)
T KOG0309|consen 1046 GTCGHVGHTSCMMEWFRTGDVCPS 1069 (1081)
T ss_pred ccccccccHHHHHHHHhcCCcCCC
Confidence 359999999999999999999984
No 109
>PRK12495 hypothetical protein; Provisional
Probab=80.49 E-value=14 Score=35.48 Aligned_cols=14 Identities=43% Similarity=0.831 Sum_probs=9.6
Q ss_pred cCCCCCCCCCccCC
Q 010385 322 RQHTCPTCRALVVP 335 (512)
Q Consensus 322 ~~~~CP~Cr~~~~~ 335 (512)
....||.|...+..
T Consensus 57 G~~~Cp~CQ~~~~~ 70 (226)
T PRK12495 57 GQEFCPTCQQPVTE 70 (226)
T ss_pred CeeECCCCCCcccc
Confidence 34569999876653
No 110
>KOG1609 consensus Protein involved in mRNA turnover and stability [RNA processing and modification]
Probab=79.92 E-value=0.87 Score=46.27 Aligned_cols=46 Identities=28% Similarity=0.705 Sum_probs=35.5
Q ss_pred CCccccccccccc----CeEeccC-----cccChhhHHHHHh--cCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTT----AKKLICG-----HLFHVHCLRSWLE--RQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~----~~~l~C~-----H~fh~~Cl~~wl~--~~~~CP~Cr~~~~ 334 (512)
+..|-||.++... +...||. +..|..|+..|.. ....|..|.....
T Consensus 78 ~~~cRIc~~~~~~~~~~~l~~pC~C~g~l~~vH~~cl~~W~~~~~~~~CeiC~~~~~ 134 (323)
T KOG1609|consen 78 GPICRICHEEDEESNGLLLISPCSCKGSLAYVHRSCLEKWFSIKGNITCEICKSFFI 134 (323)
T ss_pred CCcEEEEecccccccccccccCccccCcHHHHHHHHHHhhhccccCeeeecccccce
Confidence 4689999997754 3466774 4579999999997 5667999987654
No 111
>KOG3899 consensus Uncharacterized conserved protein [Function unknown]
Probab=79.20 E-value=0.85 Score=45.10 Aligned_cols=29 Identities=31% Similarity=0.649 Sum_probs=23.3
Q ss_pred cCcccChhhHHHHHhc-------------CCCCCCCCCccCC
Q 010385 307 CGHLFHVHCLRSWLER-------------QHTCPTCRALVVP 335 (512)
Q Consensus 307 C~H~fh~~Cl~~wl~~-------------~~~CP~Cr~~~~~ 335 (512)
|....|.+|+-+|+.. +-+||+||+...-
T Consensus 325 crp~wc~~cla~~f~~rq~~v~r~~~~~~~~~cp~cr~~fci 366 (381)
T KOG3899|consen 325 CRPLWCRSCLAQIFIGRQDNVYRYEYHRGSAQCPTCRKNFCI 366 (381)
T ss_pred cccHHHHHHHHHHHhhcccchhHHHHHhcCCCCcchhhceEE
Confidence 6788999999998843 3479999998753
No 112
>KOG0956 consensus PHD finger protein AF10 [General function prediction only]
Probab=79.02 E-value=11 Score=41.71 Aligned_cols=47 Identities=36% Similarity=0.632 Sum_probs=31.9
Q ss_pred CCCCcccccccccccCe----------EeccCcccChhhHHHH--H-hc-------CCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTTAK----------KLICGHLFHVHCLRSW--L-ER-------QHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~----------~l~C~H~fh~~Cl~~w--l-~~-------~~~CP~Cr~~~ 333 (512)
.-..+|.||-|+-.+.+ +-.|+-.||..|...- | +. -+-|-+|+.-+
T Consensus 115 RfnKtCYIC~E~GrpnkA~~GACMtCNKs~CkqaFHVTCAQ~~GLLCEE~gn~~dNVKYCGYCk~Hf 181 (900)
T KOG0956|consen 115 RFNKTCYICNEEGRPNKAAKGACMTCNKSGCKQAFHVTCAQRAGLLCEEEGNISDNVKYCGYCKYHF 181 (900)
T ss_pred hhcceeeeecccCCccccccccceecccccchhhhhhhHhhhhccceeccccccccceechhHHHHH
Confidence 34578999999854332 2347888999998762 2 11 24599997655
No 113
>COG5220 TFB3 Cdk activating kinase (CAK)/RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit TFB3 [Cell division and chromosome partitioning / Transcription / DNA replication, recombination, and repair]
Probab=78.03 E-value=1 Score=43.37 Aligned_cols=44 Identities=25% Similarity=0.653 Sum_probs=32.6
Q ss_pred CCCccccccccc-ccC-eEe---c-cCcccChhhHHHHHhcCC-CCC--CCCC
Q 010385 288 SDSTCIICREEM-TTA-KKL---I-CGHLFHVHCLRSWLERQH-TCP--TCRA 331 (512)
Q Consensus 288 ~~~~C~IC~~~~-~~~-~~l---~-C~H~fh~~Cl~~wl~~~~-~CP--~Cr~ 331 (512)
.+..|++|..+- -.| .++ | |-|..|.+|+++.+...+ .|| -|.+
T Consensus 9 ~d~~CPvCksDrYLnPdik~linPECyHrmCESCvdRIFs~GpAqCP~~gC~k 61 (314)
T COG5220 9 EDRRCPVCKSDRYLNPDIKILINPECYHRMCESCVDRIFSRGPAQCPYKGCGK 61 (314)
T ss_pred hcccCCccccccccCCCeEEEECHHHHHHHHHHHHHHHhcCCCCCCCCccHHH
Confidence 466899998763 333 232 5 999999999999997754 699 6743
No 114
>KOG0825 consensus PHD Zn-finger protein [General function prediction only]
Probab=77.38 E-value=1.2 Score=49.64 Aligned_cols=47 Identities=17% Similarity=0.196 Sum_probs=35.6
Q ss_pred CCCcccccccccccCe----Eec---cCcccChhhHHHHHhc------CCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAK----KLI---CGHLFHVHCLRSWLER------QHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~----~l~---C~H~fh~~Cl~~wl~~------~~~CP~Cr~~~~ 334 (512)
..+.|.+|.-++..++ ..| |+|.+|..||..|..+ +-.|++|..-+.
T Consensus 95 ~s~Ss~~C~~E~S~~~ds~~i~P~~~~~~~~CP~Ci~s~~DqL~~~~k~c~H~FC~~Ci~ 154 (1134)
T KOG0825|consen 95 ESDTSPVCEKEHSPDVDSSNICPVQTHVENQCPNCLKSCNDQLEESEKHTAHYFCEECVG 154 (1134)
T ss_pred cccccchhheecCCcccccCcCchhhhhhhhhhHHHHHHHHHhhccccccccccHHHHhh
Confidence 3467888887777643 345 9999999999999976 335889877664
No 115
>KOG4362 consensus Transcriptional regulator BRCA1 [Replication, recombination and repair; Transcription]
Probab=76.00 E-value=0.75 Score=51.10 Aligned_cols=47 Identities=28% Similarity=0.632 Sum_probs=39.6
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhc---CCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLER---QHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~---~~~CP~Cr~~~~~ 335 (512)
..+|.||...+.++..+.|-|.||..|+..-+.. ...||+|+..+..
T Consensus 21 ~lEc~ic~~~~~~p~~~kc~~~~l~~~~n~~f~~~~~~~~~~lc~~~~eK 70 (684)
T KOG4362|consen 21 ILECPICLEHVKEPSLLKCDHIFLKFCLNKLFESKKGPKQCALCKSDIEK 70 (684)
T ss_pred hccCCceeEEeeccchhhhhHHHHhhhhhceeeccCccccchhhhhhhhh
Confidence 5689999999999999999999999998876544 4469999977653
No 116
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=75.53 E-value=2.1 Score=47.81 Aligned_cols=38 Identities=26% Similarity=0.656 Sum_probs=28.1
Q ss_pred cccccccccccCeEe--ccCcccChhhHHHHHhcCCCCCC
Q 010385 291 TCIICREEMTTAKKL--ICGHLFHVHCLRSWLERQHTCPT 328 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l--~C~H~fh~~Cl~~wl~~~~~CP~ 328 (512)
.|.+|......-..- -|||.-|.+|+++|+..+.-||.
T Consensus 781 ~CtVC~~vi~G~~~~c~~C~H~gH~sh~~sw~~~~s~ca~ 820 (839)
T KOG0269|consen 781 KCTVCDLVIRGVDVWCQVCGHGGHDSHLKSWFFKASPCAK 820 (839)
T ss_pred CceeecceeeeeEeecccccccccHHHHHHHHhcCCCCcc
Confidence 466665554333222 49999999999999999888877
No 117
>PLN02400 cellulose synthase
Probab=72.04 E-value=25 Score=41.54 Aligned_cols=48 Identities=17% Similarity=0.479 Sum_probs=33.1
Q ss_pred CCCcccccccccccC----eEec---cCcccChhhHHH-HHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTA----KKLI---CGHLFHVHCLRS-WLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~----~~l~---C~H~fh~~Cl~~-wl~~~~~CP~Cr~~~~~ 335 (512)
....|-||-|+.... .-.. |+---|+.|.+= .-+.++.||-|+.....
T Consensus 35 ~gqiCqICGD~VG~t~dGe~FVAC~eCaFPVCRpCYEYERkeGnq~CPQCkTrYkR 90 (1085)
T PLN02400 35 NGQICQICGDDVGVTETGDVFVACNECAFPVCRPCYEYERKDGTQCCPQCKTRYRR 90 (1085)
T ss_pred CCceeeecccccCcCCCCCEEEEEccCCCccccchhheecccCCccCcccCCcccc
Confidence 345899999997532 1234 555589999843 23447889999988763
No 118
>KOG2068 consensus MOT2 transcription factor [Transcription]
Probab=71.88 E-value=4.6 Score=41.02 Aligned_cols=45 Identities=24% Similarity=0.620 Sum_probs=36.0
Q ss_pred CcccccccccccCe--E--eccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 290 STCIICREEMTTAK--K--LICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 290 ~~C~IC~~~~~~~~--~--l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
..|+||.++..... . .||+|..|..|+..-...+.+||.||.+..
T Consensus 250 ~s~p~~~~~~~~~d~~~lP~~~~~~~~l~~~~t~~~~~~~~~~~rk~~~ 298 (327)
T KOG2068|consen 250 PSCPICYEDLDLTDSNFLPCPCGFRLCLFCHKTISDGDGRCPGCRKPYE 298 (327)
T ss_pred CCCCCCCCcccccccccccccccccchhhhhhcccccCCCCCccCCccc
Confidence 68999999885432 3 368898999999888888999999996553
No 119
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=70.56 E-value=2.3e+02 Score=33.58 Aligned_cols=20 Identities=15% Similarity=0.145 Sum_probs=11.3
Q ss_pred Hhhhhhhccccccccchhhh
Q 010385 193 YVFYVSDMLMEGQWERKAVY 212 (512)
Q Consensus 193 y~~~~~d~~~~~~we~k~~~ 212 (512)
++..++|-.....|+..++.
T Consensus 1336 Wv~ImyDgldavavdqqPI~ 1355 (1956)
T KOG2302|consen 1336 WVNIMYDGLDAVAVDQQPIL 1355 (1956)
T ss_pred hhhhhccchhhceeeeeccc
Confidence 44445566656667665543
No 120
>PF02891 zf-MIZ: MIZ/SP-RING zinc finger; InterPro: IPR004181 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents MIZ-type zinc finger domains. Miz1 (Msx-interacting-zinc finger) is a zinc finger-containing protein with homology to the yeast protein, Nfi-1. Miz1 is a sequence specific DNA binding protein that can function as a positive-acting transcription factor. Miz1 binds to the homeobox protein Msx2, enhancing the specific DNA-binding ability of Msx2 []. Other proteins containing this domain include the human pias family (protein inhibitor of activated STAT protein). More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 3I2D_A.
Probab=70.13 E-value=3.3 Score=30.21 Aligned_cols=42 Identities=26% Similarity=0.506 Sum_probs=21.8
Q ss_pred CcccccccccccCeEe-ccCcccChhhHHHHHhc-----CCCCCCCCCc
Q 010385 290 STCIICREEMTTAKKL-ICGHLFHVHCLRSWLER-----QHTCPTCRAL 332 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~-----~~~CP~Cr~~ 332 (512)
..|+|....+..|.+- .|.|.-|. =++.|++. .-.||+|.++
T Consensus 3 L~CPls~~~i~~P~Rg~~C~H~~CF-Dl~~fl~~~~~~~~W~CPiC~~~ 50 (50)
T PF02891_consen 3 LRCPLSFQRIRIPVRGKNCKHLQCF-DLESFLESNQRTPKWKCPICNKP 50 (50)
T ss_dssp SB-TTTSSB-SSEEEETT--SS--E-EHHHHHHHHHHS---B-TTT---
T ss_pred eeCCCCCCEEEeCccCCcCcccceE-CHHHHHHHhhccCCeECcCCcCc
Confidence 4799999999988765 69998553 24566654 2259999763
No 121
>KOG1829 consensus Uncharacterized conserved protein, contains C1, PH and RUN domains [Signal transduction mechanisms]
Probab=65.97 E-value=2.1 Score=46.98 Aligned_cols=23 Identities=39% Similarity=1.005 Sum_probs=17.9
Q ss_pred eccCcccChhhHHHHHhcCCCCCCCC
Q 010385 305 LICGHLFHVHCLRSWLERQHTCPTCR 330 (512)
Q Consensus 305 l~C~H~fh~~Cl~~wl~~~~~CP~Cr 330 (512)
..|+++||.+|++. .+.-||.|-
T Consensus 535 ~~C~avfH~~C~~r---~s~~CPrC~ 557 (580)
T KOG1829|consen 535 STCLAVFHKKCLRR---KSPCCPRCE 557 (580)
T ss_pred HHHHHHHHHHHHhc---cCCCCCchH
Confidence 35999999999765 455599993
No 122
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=65.91 E-value=7.4 Score=43.86 Aligned_cols=43 Identities=26% Similarity=0.523 Sum_probs=31.8
Q ss_pred CCCcccccccccc-------cCeEeccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 288 SDSTCIICREEMT-------TAKKLICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 288 ~~~~C~IC~~~~~-------~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
.+..|.-|.+... ..+.+.|||.||+.|+..-..+++ |-.|..
T Consensus 783 ~e~rc~~c~~~~l~~~~~~~~~~v~~c~h~yhk~c~~~~~~~~~-~~~~~~ 832 (846)
T KOG2066|consen 783 VEERCSSCFEPNLPSGAAFDSVVVFHCGHMYHKECLMMESLRNA-CNIESG 832 (846)
T ss_pred ehhhhhhhcccccccCcccceeeEEEccchhhhcccccHHHhcc-cChhhc
Confidence 3458999988754 335778999999999988766555 666643
No 123
>KOG3039 consensus Uncharacterized conserved protein [Function unknown]
Probab=62.39 E-value=5 Score=39.00 Aligned_cols=34 Identities=12% Similarity=0.147 Sum_probs=30.7
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHh
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE 321 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~ 321 (512)
.-+.|+.|+....+|+..|=||+|+.+||.+.+.
T Consensus 42 ~FdcCsLtLqPc~dPvit~~GylfdrEaILe~il 75 (303)
T KOG3039|consen 42 PFDCCSLTLQPCRDPVITPDGYLFDREAILEYIL 75 (303)
T ss_pred CcceeeeecccccCCccCCCCeeeeHHHHHHHHH
Confidence 3568999999999999999999999999998764
No 124
>KOG3579 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.68 E-value=5 Score=39.73 Aligned_cols=34 Identities=24% Similarity=0.628 Sum_probs=29.9
Q ss_pred CCcccccccccccCeEecc----CcccChhhHHHHHhc
Q 010385 289 DSTCIICREEMTTAKKLIC----GHLFHVHCLRSWLER 322 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C----~H~fh~~Cl~~wl~~ 322 (512)
...|.+|.|.+++--.+.| .|.||..|-++-+++
T Consensus 268 pLcCTLC~ERLEDTHFVQCPSVp~HKFCFPCSResIK~ 305 (352)
T KOG3579|consen 268 PLCCTLCHERLEDTHFVQCPSVPSHKFCFPCSRESIKQ 305 (352)
T ss_pred ceeehhhhhhhccCceeecCCCcccceecccCHHHHHh
Confidence 4789999999999988888 699999999998765
No 125
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=61.49 E-value=3.9 Score=43.07 Aligned_cols=35 Identities=34% Similarity=0.650 Sum_probs=26.2
Q ss_pred CCCcccccccccccC-e---EeccCcccChhhHHHHHhc
Q 010385 288 SDSTCIICREEMTTA-K---KLICGHLFHVHCLRSWLER 322 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~-~---~l~C~H~fh~~Cl~~wl~~ 322 (512)
...+|.||..+...+ . ...|+|.||..|+++.++.
T Consensus 145 ~~~~C~iC~~e~~~~~~~f~~~~C~H~fC~~C~k~~iev 183 (384)
T KOG1812|consen 145 PKEECGICFVEDPEAEDMFSVLKCGHRFCKDCVKQHIEV 183 (384)
T ss_pred ccccCccCccccccHhhhHHHhcccchhhhHHhHHHhhh
Confidence 356899999444333 2 4569999999999988764
No 126
>KOG4718 consensus Non-SMC (structural maintenance of chromosomes) element 1 protein (NSE1) [Chromatin structure and dynamics]
Probab=61.10 E-value=4.1 Score=38.72 Aligned_cols=43 Identities=23% Similarity=0.706 Sum_probs=35.4
Q ss_pred CCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
-..|.+|.+..-.++.- .||--+|..|+...+++...||.|..
T Consensus 181 lk~Cn~Ch~LvIqg~rCg~c~i~~h~~c~qty~q~~~~cphc~d 224 (235)
T KOG4718|consen 181 LKNCNLCHCLVIQGIRCGSCNIQYHRGCIQTYLQRRDICPHCGD 224 (235)
T ss_pred HHHHhHhHHHhheeeccCcccchhhhHHHHHHhcccCcCCchhc
Confidence 35899999887666543 57778999999999999999999943
No 127
>KOG0314 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=60.96 E-value=58 Score=34.89 Aligned_cols=34 Identities=32% Similarity=0.597 Sum_probs=20.1
Q ss_pred CCCCccccc-ccccccCeEe--ccCcccChhhHHHHH
Q 010385 287 ASDSTCIIC-REEMTTAKKL--ICGHLFHVHCLRSWL 320 (512)
Q Consensus 287 ~~~~~C~IC-~~~~~~~~~l--~C~H~fh~~Cl~~wl 320 (512)
..++.|++| .+.+.+...+ -|.-.||..|++.-+
T Consensus 217 ~e~~~c~~~~~~~~~~~~l~~~~~~~~~~~~~i~~~l 253 (448)
T KOG0314|consen 217 PEGLQCPLCGKEVMLDAALLSKCCLKSFCDKCIRDAL 253 (448)
T ss_pred CccccCceecchhhHHHHHhhhhhcccCCcccccccc
Confidence 456778888 5555554444 255666666665544
No 128
>KOG3113 consensus Uncharacterized conserved protein [Function unknown]
Probab=56.90 E-value=10 Score=37.09 Aligned_cols=50 Identities=20% Similarity=0.366 Sum_probs=37.5
Q ss_pred CCCCcccccccccccCe----EeccCcccChhhHHHHHhcCCCCCCCCCccCCCCC
Q 010385 287 ASDSTCIICREEMTTAK----KLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~----~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~~ 338 (512)
.....|+|-.-+|.... ..+|||+|-..-+++. ...+|++|.+.....+.
T Consensus 109 ~a~fiCPvtgleMng~~~F~~l~~CGcV~SerAlKei--kas~C~~C~a~y~~~dv 162 (293)
T KOG3113|consen 109 RARFICPVTGLEMNGKYRFCALRCCGCVFSERALKEI--KASVCHVCGAAYQEDDV 162 (293)
T ss_pred cceeecccccceecceEEEEEEeccceeccHHHHHHh--hhccccccCCcccccCe
Confidence 44578998877776543 3489999999888775 36789999998865543
No 129
>KOG3842 consensus Adaptor protein Pellino [Signal transduction mechanisms]
Probab=55.42 E-value=10 Score=38.13 Aligned_cols=48 Identities=21% Similarity=0.544 Sum_probs=34.0
Q ss_pred CCCCccccccccccc-----------------C--eEeccCcccChhhHHHHHhc---------CCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTT-----------------A--KKLICGHLFHVHCLRSWLER---------QHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~-----------------~--~~l~C~H~fh~~Cl~~wl~~---------~~~CP~Cr~~~~ 334 (512)
..+.+|++|+..-.- | ..-||||.--.+-.+=|-+- +..||.|-..+.
T Consensus 339 ~~~r~CPmC~~~gp~V~L~lG~E~~f~vD~G~pthaF~PCGHv~sekt~~YWs~iplPhGT~~f~a~CPFC~~~L~ 414 (429)
T KOG3842|consen 339 QRERECPMCRVVGPYVPLWLGCEAGFYVDAGPPTHAFNPCGHVCSEKTVKYWSQIPLPHGTHAFHAACPFCATQLA 414 (429)
T ss_pred cccCcCCeeeeecceeeeeccccceeEecCCCcccccCCcccccchhhhhHhhcCcCCCccccccccCcchhhhhc
Confidence 346789999976321 1 13489999888888888753 456999977664
No 130
>KOG0824 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=53.29 E-value=14 Score=37.06 Aligned_cols=49 Identities=29% Similarity=0.688 Sum_probs=42.1
Q ss_pred CCCCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...+.|-||...+..+.+. .|.|-|+..|...|....+.||.|+....+
T Consensus 103 ~~~~~~~~~~g~l~vpt~~qg~w~qf~~~~p~~~~~~~~~~~d~~~~~~p 152 (324)
T KOG0824|consen 103 QDHDICYICYGKLTVPTRIQGCWHQFCYVCPKSNFAMGNDCPDCRGKISP 152 (324)
T ss_pred CCccceeeeeeeEEecccccCceeeeeecCCchhhhhhhccchhhcCcCc
Confidence 4567899999999888665 499999999999999999999999887654
No 131
>PF04216 FdhE: Protein involved in formate dehydrogenase formation; InterPro: IPR006452 This family of sequences describe an accessory protein required for the assembly of formate dehydrogenase of certain proteobacteria although not present in the final complex []. The exact nature of the function of FdhE in the assembly of the complex is unknown, but considering the presence of selenocysteine, molybdopterin, iron-sulphur clusters and cytochrome b556, it is likely to be involved in the insertion of cofactors. ; GO: 0005737 cytoplasm; PDB: 2FIY_B.
Probab=52.30 E-value=6.5 Score=39.72 Aligned_cols=46 Identities=17% Similarity=0.265 Sum_probs=23.2
Q ss_pred CCCCcccccccccccCeEec-----cCcccChhhHHHHHhcCCCCCCCCCc
Q 010385 287 ASDSTCIICREEMTTAKKLI-----CGHLFHVHCLRSWLERQHTCPTCRAL 332 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-----C~H~fh~~Cl~~wl~~~~~CP~Cr~~ 332 (512)
.....|++|-....-..... -.|.+|.-|-..|-.....||.|-..
T Consensus 170 w~~g~CPvCGs~P~~s~l~~~~~~G~R~L~Cs~C~t~W~~~R~~Cp~Cg~~ 220 (290)
T PF04216_consen 170 WQRGYCPVCGSPPVLSVLRGGEREGKRYLHCSLCGTEWRFVRIKCPYCGNT 220 (290)
T ss_dssp TT-SS-TTT---EEEEEEE------EEEEEETTT--EEE--TTS-TTT---
T ss_pred ccCCcCCCCCCcCceEEEecCCCCccEEEEcCCCCCeeeecCCCCcCCCCC
Confidence 34579999987755443322 24778888999998888899999543
No 132
>PF13901 DUF4206: Domain of unknown function (DUF4206)
Probab=51.07 E-value=8.6 Score=36.75 Aligned_cols=39 Identities=28% Similarity=0.813 Sum_probs=26.7
Q ss_pred CCCcccccccc-----cccCeE---eccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 288 SDSTCIICREE-----MTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 288 ~~~~C~IC~~~-----~~~~~~---l~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
.+..|-+|.++ |+.... -.|+-+||..|.. +..||.|.+
T Consensus 151 kGfiCe~C~~~~~IfPF~~~~~~~C~~C~~v~H~~C~~-----~~~CpkC~R 197 (202)
T PF13901_consen 151 KGFICEICNSDDIIFPFQIDTTVRCPKCKSVFHKSCFR-----KKSCPKCAR 197 (202)
T ss_pred CCCCCccCCCCCCCCCCCCCCeeeCCcCccccchhhcC-----CCCCCCcHh
Confidence 46789999864 112112 2589999999975 267999943
No 133
>PLN02189 cellulose synthase
Probab=49.04 E-value=19 Score=42.29 Aligned_cols=47 Identities=23% Similarity=0.531 Sum_probs=33.4
Q ss_pred CCCcccccccccccC----eEec---cCcccChhhHHHH-HhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTA----KKLI---CGHLFHVHCLRSW-LERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~----~~l~---C~H~fh~~Cl~~w-l~~~~~CP~Cr~~~~ 334 (512)
....|.||-|+.... .-.. |+---|..|.+-= -+.++.||-|+....
T Consensus 33 ~~~~C~iCgd~vg~~~~g~~fvaC~~C~fpvCr~Cyeyer~eg~q~CpqCkt~Y~ 87 (1040)
T PLN02189 33 DGQVCEICGDEIGLTVDGDLFVACNECGFPVCRPCYEYERREGTQNCPQCKTRYK 87 (1040)
T ss_pred cCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999997532 2334 5666899998542 244788999998876
No 134
>COG5109 Uncharacterized conserved protein, contains RING Zn-finger [General function prediction only]
Probab=48.17 E-value=11 Score=37.98 Aligned_cols=42 Identities=26% Similarity=0.507 Sum_probs=31.2
Q ss_pred CCCccccccccc---ccCeEeccCcccChhhHHHHHhc---CCCCCCC
Q 010385 288 SDSTCIICREEM---TTAKKLICGHLFHVHCLRSWLER---QHTCPTC 329 (512)
Q Consensus 288 ~~~~C~IC~~~~---~~~~~l~C~H~fh~~Cl~~wl~~---~~~CP~C 329 (512)
.-..|++--+.- ..|..+.|||+.-.+-++..-+. ...||+|
T Consensus 335 s~FiCPVlKe~~t~ENpP~ml~CgHVIskeal~~LS~nG~~~FKCPYC 382 (396)
T COG5109 335 SLFICPVLKELCTDENPPVMLECGHVISKEALSVLSQNGVLSFKCPYC 382 (396)
T ss_pred ceeeccccHhhhcccCCCeeeeccceeeHHHHHHHhhcCcEEeeCCCC
Confidence 457888755543 35788999999999999885443 3459999
No 135
>PLN02436 cellulose synthase A
Probab=46.98 E-value=22 Score=41.97 Aligned_cols=47 Identities=26% Similarity=0.547 Sum_probs=33.0
Q ss_pred CCCcccccccccccC----eEec---cCcccChhhHHHH-HhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTA----KKLI---CGHLFHVHCLRSW-LERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~----~~l~---C~H~fh~~Cl~~w-l~~~~~CP~Cr~~~~ 334 (512)
....|.||-|+.... .-.. |+---|..|.+-= -+.++.||-|+....
T Consensus 35 ~~~iCqICGD~Vg~t~dGe~FVACn~C~fpvCr~Cyeyer~eg~~~Cpqckt~Y~ 89 (1094)
T PLN02436 35 SGQTCQICGDEIELTVDGEPFVACNECAFPVCRPCYEYERREGNQACPQCKTRYK 89 (1094)
T ss_pred CCccccccccccCcCCCCCEEEeeccCCCccccchhhhhhhcCCccCcccCCchh
Confidence 345899999997432 2334 5555899998542 244788999998875
No 136
>KOG1815 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=45.61 E-value=26 Score=37.69 Aligned_cols=36 Identities=33% Similarity=0.601 Sum_probs=30.8
Q ss_pred CCCCccccccccccc-CeEeccCcccChhhHHHHHhc
Q 010385 287 ASDSTCIICREEMTT-AKKLICGHLFHVHCLRSWLER 322 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~-~~~l~C~H~fh~~Cl~~wl~~ 322 (512)
..+..|.||.+.... ...+.|||.||..|....+.+
T Consensus 68 ~~~~~c~ic~~~~~~~~~~~~c~H~~c~~cw~~yl~~ 104 (444)
T KOG1815|consen 68 KGDVQCGICVESYDGEIIGLGCGHPFCPPCWTGYLGT 104 (444)
T ss_pred CccccCCcccCCCcchhhhcCCCcHHHHHHHHHHhhh
Confidence 456789999999985 667799999999999998865
No 137
>KOG0971 consensus Microtubule-associated protein dynactin DCTN1/Glued [Cell cycle control, cell division, chromosome partitioning; Cytoskeleton]
Probab=45.13 E-value=1.5e+02 Score=34.51 Aligned_cols=24 Identities=33% Similarity=0.458 Sum_probs=13.2
Q ss_pred CCCCCCCCcchHHHHHHHHHHHHHH
Q 010385 478 LPSTQNTPVSQLEAQRKFIENQIEQ 502 (512)
Q Consensus 478 ~~~~~~~~~~~~~~~~~~~~~~~~~ 502 (512)
.|+.+-.+-. |+||-+-|...+|-
T Consensus 219 l~saskte~e-Lr~QvrdLtEkLet 242 (1243)
T KOG0971|consen 219 LPSASKTEEE-LRAQVRDLTEKLET 242 (1243)
T ss_pred CCccccchHH-HHHHHHHHHHHHHH
Confidence 4444333333 77777777666654
No 138
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.86 E-value=7.6 Score=40.43 Aligned_cols=27 Identities=41% Similarity=0.934 Sum_probs=0.0
Q ss_pred EeccCcccChhhHHHHHh------cCCCCCCCCCcc
Q 010385 304 KLICGHLFHVHCLRSWLE------RQHTCPTCRALV 333 (512)
Q Consensus 304 ~l~C~H~fh~~Cl~~wl~------~~~~CP~Cr~~~ 333 (512)
-+.|||++.. ..|-. +..+||+||..=
T Consensus 306 Yl~CGHVhG~---h~Wg~~~~~~~~~r~CPlCr~~g 338 (416)
T PF04710_consen 306 YLNCGHVHGY---HNWGQDSDRDPRSRTCPLCRQVG 338 (416)
T ss_dssp ------------------------------------
T ss_pred eccccceeee---cccccccccccccccCCCccccC
Confidence 3569998654 34642 255799998753
No 139
>PF04710 Pellino: Pellino; InterPro: IPR006800 Pellino is involved in Toll-like signalling pathways, and associates with the kinase domain of the Pelle Ser/Thr kinase [, , ].; PDB: 3EGB_B 3EGA_A.
Probab=43.86 E-value=7.6 Score=40.43 Aligned_cols=46 Identities=24% Similarity=0.568 Sum_probs=0.0
Q ss_pred CCcccccccccc-----------------cC--eEeccCcccChhhHHHHHhc---------CCCCCCCCCccC
Q 010385 289 DSTCIICREEMT-----------------TA--KKLICGHLFHVHCLRSWLER---------QHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~-----------------~~--~~l~C~H~fh~~Cl~~wl~~---------~~~CP~Cr~~~~ 334 (512)
..+|++|+..-. .| ..-||||.--.+..+-|-+- +..||.|-..+.
T Consensus 328 ~r~CPlCr~~g~~V~L~mG~E~afyvD~~~pthaF~PCGHv~SekTa~yWs~i~lPhGt~~f~a~CPFCa~~L~ 401 (416)
T PF04710_consen 328 SRTCPLCRQVGPYVPLWMGCEPAFYVDSGPPTHAFNPCGHVCSEKTAKYWSQIPLPHGTHAFHAACPFCATPLD 401 (416)
T ss_dssp --------------------------------------------------------------------------
T ss_pred cccCCCccccCCceeEeeccccceeecCCCCceeecccccccchhhhhhhhcCCCCCCcccccccCCcccCccc
Confidence 678999987532 11 13489999999999999754 346999988775
No 140
>smart00132 LIM Zinc-binding domain present in Lin-11, Isl-1, Mec-3. Zinc-binding domain family. Some LIM domains bind protein partners via tyrosine-containing motifs. LIM domains are found in many key regulators of developmental pathways.
Probab=42.98 E-value=19 Score=23.58 Aligned_cols=35 Identities=23% Similarity=0.662 Sum_probs=23.9
Q ss_pred cccccccccccC-eEe-ccCcccChhhHHHHHhcCCCCCCCCCcc
Q 010385 291 TCIICREEMTTA-KKL-ICGHLFHVHCLRSWLERQHTCPTCRALV 333 (512)
Q Consensus 291 ~C~IC~~~~~~~-~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~ 333 (512)
.|..|.+.+... ..+ .=+..||..|+ .|..|+.++
T Consensus 1 ~C~~C~~~i~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~L 37 (39)
T smart00132 1 KCAGCGKPIRGGELVLRALGKVWHPECF--------KCSKCGKPL 37 (39)
T ss_pred CccccCCcccCCcEEEEeCCccccccCC--------CCcccCCcC
Confidence 377788877664 333 34678888884 688887765
No 141
>KOG3005 consensus GIY-YIG type nuclease [General function prediction only]
Probab=41.77 E-value=12 Score=37.08 Aligned_cols=45 Identities=27% Similarity=0.709 Sum_probs=32.0
Q ss_pred CCcccccccccccCe--Ee-----ccCcccChhhHHHHHhc---------CCCCCCCCCcc
Q 010385 289 DSTCIICREEMTTAK--KL-----ICGHLFHVHCLRSWLER---------QHTCPTCRALV 333 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~--~l-----~C~H~fh~~Cl~~wl~~---------~~~CP~Cr~~~ 333 (512)
..+|.+|.+++.+.. .+ -|+-.+|..|+-.-+.. ...||.|++.+
T Consensus 182 ~~~celc~~ei~e~~~~~a~c~~~~c~~~~h~~CLa~~~~~~e~g~~~p~eg~cp~C~~~~ 242 (276)
T KOG3005|consen 182 NVECELCEKEILETDWSRATCPNPDCDSLNHLTCLAEELLEVEPGQLIPLEGMCPKCEKFL 242 (276)
T ss_pred chhhHHHHHHhccccceeccCCCCCCCchhhhhhhhHHHhccCCCceeccCCCCCchhcee
Confidence 368999999994432 22 27888999999984422 34599998854
No 142
>PF00412 LIM: LIM domain; InterPro: IPR001781 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents LIM-type zinc finger (Znf) domains. LIM domains coordinate one or more zinc atoms, and are named after the three proteins (LIN-11, Isl1 and MEC-3) in which they were first found. They consist of two zinc-binding motifs that resemble GATA-like Znf's, however the residues holding the zinc atom(s) are variable, involving Cys, His, Asp or Glu residues. LIM domains are involved in proteins with differing functions, including gene expression, and cytoskeleton organisation and development [, ]. Protein containing LIM Znf domains include: Caenorhabditis elegans mec-3; a protein required for the differentiation of the set of six touch receptor neurons in this nematode. C. elegans. lin-11; a protein required for the asymmetric division of vulval blast cells. Vertebrate insulin gene enhancer binding protein isl-1. Isl-1 binds to one of the two cis-acting protein-binding domains of the insulin gene. Vertebrate homeobox proteins lim-1, lim-2 (lim-5) and lim3. Vertebrate lmx-1, which acts as a transcriptional activator by binding to the FLAT element; a beta-cell-specific transcriptional enhancer found in the insulin gene. Mammalian LH-2, a transcriptional regulatory protein involved in the control of cell differentiation in developing lymphoid and neural cell types. Drosophila melanogaster (Fruit fly) protein apterous, required for the normal development of the wing and halter imaginal discs. Vertebrate protein kinases LIMK-1 and LIMK-2. Mammalian rhombotins. Rhombotin 1 (RBTN1 or TTG-1) and rhombotin-2 (RBTN2 or TTG-2) are proteins of about 160 amino acids whose genes are disrupted by chromosomal translocations in T-cell leukemia. Mammalian and avian cysteine-rich protein (CRP), a 192 amino-acid protein of unknown function. Seems to interact with zyxin. Mammalian cysteine-rich intestinal protein (CRIP), a small protein which seems to have a role in zinc absorption and may function as an intracellular zinc transport protein. Vertebrate paxillin, a cytoskeletal focal adhesion protein. Mus musculus (Mouse) testin which should not be confused with rat testin which is a thiol protease homologue (see IPR000169 from INTERPRO). Helianthus annuus (Common sunflower) pollen specific protein SF3. Chicken zyxin. Zyxin is a low-abundance adhesion plaque protein which has been shown to interact with CRP. Yeast protein LRG1 which is involved in sporulation []. Saccharomyces cerevisiae (Baker's yeast) rho-type GTPase activating protein RGA1/DBM1. C. elegans homeobox protein ceh-14. C. elegans homeobox protein unc-97. S. cerevisiae hypothetical protein YKR090w. C. elegans hypothetical proteins C28H8.6. These proteins generally contain two tandem copies of the LIM domain in their N-terminal section. Zyxin and paxillin are exceptions in that they contain respectively three and four LIM domains at their C-terminal extremity. In apterous, isl-1, LH-2, lin-11, lim-1 to lim-3, lmx-1 and ceh-14 and mec-3 there is a homeobox domain some 50 to 95 amino acids after the LIM domains. LIM domains contain seven conserved cysteine residues and a histidine. The arrangement followed by these conserved residues is: C-x(2)-C-x(16,23)-H-x(2)-[CH]-x(2)-C-x(2)-C-x(16,21)-C-x(2,3)-[CHD] LIM domains bind two zinc ions []. LIM does not bind DNA, rather it seems to act as an interface for protein-protein interaction. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0008270 zinc ion binding; PDB: 2CO8_A 2EGQ_A 2CUR_A 3IXE_B 1CTL_A 1B8T_A 1X62_A 2DFY_C 1IML_A 2CUQ_A ....
Probab=39.55 E-value=17 Score=26.61 Aligned_cols=36 Identities=19% Similarity=0.635 Sum_probs=25.4
Q ss_pred ccccccccccCeEe--ccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 292 CIICREEMTTAKKL--ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 292 C~IC~~~~~~~~~l--~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
|.-|.+.+...... .-|..||..|+ .|-.|+.++..
T Consensus 1 C~~C~~~I~~~~~~~~~~~~~~H~~Cf--------~C~~C~~~l~~ 38 (58)
T PF00412_consen 1 CARCGKPIYGTEIVIKAMGKFWHPECF--------KCSKCGKPLND 38 (58)
T ss_dssp BTTTSSBESSSSEEEEETTEEEETTTS--------BETTTTCBTTT
T ss_pred CCCCCCCccCcEEEEEeCCcEEEcccc--------ccCCCCCccCC
Confidence 66677777655443 67788888884 68888887754
No 143
>PLN02638 cellulose synthase A (UDP-forming), catalytic subunit
Probab=39.32 E-value=32 Score=40.71 Aligned_cols=47 Identities=17% Similarity=0.514 Sum_probs=33.0
Q ss_pred CCCcccccccccccC----eEec---cCcccChhhHHH-HHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTA----KKLI---CGHLFHVHCLRS-WLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~----~~l~---C~H~fh~~Cl~~-wl~~~~~CP~Cr~~~~ 334 (512)
....|-||-|+.... .-.. |+---|..|.+= .-+.++.||-|+....
T Consensus 16 ~~qiCqICGD~vg~~~~Ge~FVAC~eC~FPVCrpCYEYEr~eG~q~CPqCktrYk 70 (1079)
T PLN02638 16 GGQVCQICGDNVGKTVDGEPFVACDVCAFPVCRPCYEYERKDGNQSCPQCKTKYK 70 (1079)
T ss_pred CCceeeecccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 345899999997533 1334 555589999843 3345889999998875
No 144
>PF07191 zinc-ribbons_6: zinc-ribbons; InterPro: IPR010807 This family consists of several short, hypothetical bacterial proteins of around 70 residues in length. Members of this family 8 highly conserved cysteine residues. The function of the family is unknown.; PDB: 2JRP_A 2JNE_A.
Probab=39.29 E-value=4.3 Score=31.77 Aligned_cols=40 Identities=25% Similarity=0.647 Sum_probs=22.0
Q ss_pred CcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 290 STCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
..|+.|..+++... +|..|..|-.. +.....||-|..++.
T Consensus 2 ~~CP~C~~~L~~~~----~~~~C~~C~~~-~~~~a~CPdC~~~Le 41 (70)
T PF07191_consen 2 NTCPKCQQELEWQG----GHYHCEACQKD-YKKEAFCPDCGQPLE 41 (70)
T ss_dssp -B-SSS-SBEEEET----TEEEETTT--E-EEEEEE-TTT-SB-E
T ss_pred CcCCCCCCccEEeC----CEEECcccccc-ceecccCCCcccHHH
Confidence 46999988865443 67777777654 334557999988874
No 145
>PLN03223 Polycystin cation channel protein; Provisional
Probab=38.67 E-value=8.7e+02 Score=30.21 Aligned_cols=49 Identities=18% Similarity=0.313 Sum_probs=31.0
Q ss_pred HHHHHHHHHHHHHHHhccCchHhhH------HHhhcCCchHHHHHHHHHHHHHHH
Q 010385 9 GFSFMATLAVVYHAFNSRRQFYPSM------VYLSTSKISLVLLMNMGLVIMCIL 57 (512)
Q Consensus 9 ~~s~~~~~~~v~~~~~~~~~fy~~~------v~l~~s~~~~~il~N~~~~~~~~~ 57 (512)
+.=++..+.++|+.+..-.+++..- ....++..+.+-+++.++.+..+.
T Consensus 1177 acEIIFVLFILYfIyrEIkEI~k~KK~RG~~laYFKSfWNwLEIl~IlLS~AAIv 1231 (1634)
T PLN03223 1177 AMEILLAIGAVYSVYEEAMDFGSSKKTRGSYLAYFLSGWNYVDFASIGLHLATIM 1231 (1634)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHhhhcccchhhHhccchHHHHHHHHHHHHHHHH
Confidence 3446667777777777665565431 233566888887777777655543
No 146
>COG1615 Uncharacterized conserved protein [Function unknown]
Probab=37.24 E-value=4.8e+02 Score=29.91 Aligned_cols=14 Identities=21% Similarity=0.529 Sum_probs=10.9
Q ss_pred HHHHhccCCcHHHH
Q 010385 61 IKKVFLGSLREAEV 74 (512)
Q Consensus 61 ~~~~ffG~Lr~~E~ 74 (512)
+....||.+|..|.
T Consensus 167 v~~Yif~~irlse~ 180 (885)
T COG1615 167 VTHYIFGGIRLSEF 180 (885)
T ss_pred HHHHHhhceeeccc
Confidence 77889999995553
No 147
>PF06844 DUF1244: Protein of unknown function (DUF1244); InterPro: IPR009654 This family consists of several short bacterial proteins of around 100 residues in length. The function of this family is unknown.; PDB: 2O35_A 3FYB_B.
Probab=37.18 E-value=18 Score=27.96 Aligned_cols=13 Identities=31% Similarity=0.792 Sum_probs=9.2
Q ss_pred ccChhhHHHHHhc
Q 010385 310 LFHVHCLRSWLER 322 (512)
Q Consensus 310 ~fh~~Cl~~wl~~ 322 (512)
.||..||.+|...
T Consensus 11 gFCRNCLskWy~~ 23 (68)
T PF06844_consen 11 GFCRNCLSKWYRE 23 (68)
T ss_dssp S--HHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999853
No 148
>KOG1812 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=36.31 E-value=18 Score=38.08 Aligned_cols=43 Identities=23% Similarity=0.530 Sum_probs=31.2
Q ss_pred CCCcccccccccccC-----eEeccCcccChhhHHHHHhcCCCCCCCC
Q 010385 288 SDSTCIICREEMTTA-----KKLICGHLFHVHCLRSWLERQHTCPTCR 330 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~-----~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr 330 (512)
.-..|+.|.-..+.. ..-.|||-||+.|...|...+..|..|-
T Consensus 305 ~wr~CpkC~~~ie~~~GCnhm~CrC~~~fcy~C~~~~~~~~~~~~~~~ 352 (384)
T KOG1812|consen 305 RWRQCPKCKFMIELSEGCNHMTCRCGHQFCYMCGGDWKTHNGECYECC 352 (384)
T ss_pred hcCcCcccceeeeecCCcceEEeeccccchhhcCcchhhCCccccCcc
Confidence 356788887665432 2335999999999999988888776553
No 149
>PF06906 DUF1272: Protein of unknown function (DUF1272); InterPro: IPR010696 This family consists of several hypothetical bacterial proteins of around 80 residues in length. This family contains a number of conserved cysteine residues and its function is unknown.
Probab=35.47 E-value=47 Score=24.87 Aligned_cols=43 Identities=26% Similarity=0.712 Sum_probs=29.5
Q ss_pred cccccccccccCe--EeccC--cccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 291 TCIICREEMTTAK--KLICG--HLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 291 ~C~IC~~~~~~~~--~l~C~--H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.|--|-.++.... ..-|. ..||..|.+..+ +..||.|...+..
T Consensus 7 nCE~C~~dLp~~s~~A~ICSfECTFC~~C~e~~l--~~~CPNCgGelv~ 53 (57)
T PF06906_consen 7 NCECCDKDLPPDSPEAYICSFECTFCADCAETML--NGVCPNCGGELVR 53 (57)
T ss_pred CccccCCCCCCCCCcceEEeEeCcccHHHHHHHh--cCcCcCCCCcccc
Confidence 4666666654332 33465 369999998866 6789999888754
No 150
>PRK03564 formate dehydrogenase accessory protein FdhE; Provisional
Probab=33.36 E-value=28 Score=35.57 Aligned_cols=45 Identities=16% Similarity=0.388 Sum_probs=31.8
Q ss_pred CCCCcccccccccccCeE-e--c--cCcccChhhHHHHHhcCCCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKK-L--I--CGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~-l--~--C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
.....|++|-..-..... . . =.|..|.-|-..|-.....||.|..
T Consensus 185 ~~~~~CPvCGs~P~~s~v~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 234 (309)
T PRK03564 185 EQRQFCPVCGSMPVSSVVQIGTTQGLRYLHCNLCESEWHVVRVKCSNCEQ 234 (309)
T ss_pred cCCCCCCCCCCcchhheeeccCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 346789999887543321 1 1 2356777888899888889999964
No 151
>KOG4185 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=33.11 E-value=8.1 Score=38.99 Aligned_cols=46 Identities=24% Similarity=0.461 Sum_probs=35.7
Q ss_pred CCCccccccccccc------CeEec--------cCcccChhhHHHHHhc-CCCCCCCCCcc
Q 010385 288 SDSTCIICREEMTT------AKKLI--------CGHLFHVHCLRSWLER-QHTCPTCRALV 333 (512)
Q Consensus 288 ~~~~C~IC~~~~~~------~~~l~--------C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~ 333 (512)
.+..|.||...+.. |..+. |||..|..|+..-+.+ ...||.||...
T Consensus 206 ~~~~c~ic~~~~~~n~~~~~p~vl~~~~~~~~~c~htlc~~c~~~~l~~~~~~cp~~~~~~ 266 (296)
T KOG4185|consen 206 IEKLCEICERIYSENDEKLAPLVLSLSRLKEKIEGHTLCKECIDTILLQAGIKCPFCTWSH 266 (296)
T ss_pred HHHHHHHHHHHhhccccccchhHHHHHHHHHHHHHHHHHhcchHHHHHHhhhcCCccccee
Confidence 35679999887762 34555 9999999999998765 45899998753
No 152
>PF14569 zf-UDP: Zinc-binding RING-finger; PDB: 1WEO_A.
Probab=32.75 E-value=54 Score=26.23 Aligned_cols=48 Identities=19% Similarity=0.475 Sum_probs=19.1
Q ss_pred CCCcccccccccccC---e-Ee---ccCcccChhhHHHHH-hcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTA---K-KL---ICGHLFHVHCLRSWL-ERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~---~-~l---~C~H~fh~~Cl~~wl-~~~~~CP~Cr~~~~~ 335 (512)
....|-||-|+.-.. . .. .|+---|+.|..-=. +.++.||-|+.....
T Consensus 8 ~~qiCqiCGD~VGl~~~Ge~FVAC~eC~fPvCr~CyEYErkeg~q~CpqCkt~ykr 63 (80)
T PF14569_consen 8 NGQICQICGDDVGLTENGEVFVACHECAFPVCRPCYEYERKEGNQVCPQCKTRYKR 63 (80)
T ss_dssp SS-B-SSS--B--B-SSSSB--S-SSS-----HHHHHHHHHTS-SB-TTT--B---
T ss_pred CCcccccccCccccCCCCCEEEEEcccCCccchhHHHHHhhcCcccccccCCCccc
Confidence 356899999987432 2 22 366678899986533 457889999977653
No 153
>PF14446 Prok-RING_1: Prokaryotic RING finger family 1
Probab=32.55 E-value=42 Score=24.96 Aligned_cols=36 Identities=19% Similarity=0.597 Sum_probs=25.3
Q ss_pred CCcccccccccc--cCeEe--ccCcccChhhHHHHHhcCCCCCC
Q 010385 289 DSTCIICREEMT--TAKKL--ICGHLFHVHCLRSWLERQHTCPT 328 (512)
Q Consensus 289 ~~~C~IC~~~~~--~~~~l--~C~H~fh~~Cl~~wl~~~~~CP~ 328 (512)
...|.+|-+.+. +..+. .||-.+|+.|..+ ...|-.
T Consensus 5 ~~~C~~Cg~~~~~~dDiVvCp~CgapyHR~C~~~----~g~C~~ 44 (54)
T PF14446_consen 5 GCKCPVCGKKFKDGDDIVVCPECGAPYHRDCWEK----AGGCIN 44 (54)
T ss_pred CccChhhCCcccCCCCEEECCCCCCcccHHHHhh----CCceEe
Confidence 568999999995 33332 4999999999643 445544
No 154
>TIGR01562 FdhE formate dehydrogenase accessory protein FdhE. The only sequence scoring between trusted and noise is that from Aquifex aeolicus, which shows certain structural differences from the proteobacterial forms in the alignment. However it is notable that A. aeolicus also has a sequence scoring above trusted to the alpha subunit of formate dehydrogenase (TIGR01553).
Probab=31.66 E-value=28 Score=35.52 Aligned_cols=44 Identities=18% Similarity=0.342 Sum_probs=30.8
Q ss_pred CCCcccccccccccCeEe----c--cCcccChhhHHHHHhcCCCCCCCCC
Q 010385 288 SDSTCIICREEMTTAKKL----I--CGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l----~--C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
....|++|-..-...... . =.|..|.-|-..|-.....||.|..
T Consensus 183 ~~~~CPvCGs~P~~s~~~~~~~~~G~RyL~CslC~teW~~~R~~C~~Cg~ 232 (305)
T TIGR01562 183 SRTLCPACGSPPVASMVRQGGKETGLRYLSCSLCATEWHYVRVKCSHCEE 232 (305)
T ss_pred CCCcCCCCCChhhhhhhcccCCCCCceEEEcCCCCCcccccCccCCCCCC
Confidence 345899998875433211 1 2356777788899888889999965
No 155
>PF09726 Macoilin: Transmembrane protein; InterPro: IPR019130 This entry represents the multi-pass transmembrane protein Macoilin, which is highly conserved in eukaryotes. ; GO: 0016021 integral to membrane
Probab=31.46 E-value=1.3e+02 Score=34.39 Aligned_cols=113 Identities=19% Similarity=0.268 Sum_probs=0.0
Q ss_pred ccCCc-HHHHHHHHHhh-HHHHHHHHHhhhhccccchhHHHHHHHHHHHHHHHHHHHhhhhccc----ccCCCCChhHHH
Q 010385 66 LGSLR-EAEVERLNEQS-RREIMEILFAITIFRQDFSVSFLAMVTTLLLIKALHWLAQKRVEYI----ETTPTVPLLSHI 139 (512)
Q Consensus 66 fG~Lr-~~E~e~l~e~~-~~~v~~~lf~~~if~~~~~~~~l~~~~~ll~lk~~h~l~~dR~e~l----~~sp~~~~~~h~ 139 (512)
+|+|| +.-...+.|.+ ..++.++-|+ ++|+++++ +-++..-|+||| ..-.++.-..+.
T Consensus 7 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~------------~~w~~~~~----~d~~~~~r~e~~~p~wl~~~~~~~~~~~ 70 (697)
T PF09726_consen 7 CGKLRRPMKRNKITEGIYGSTFLYVKFL------------LVWALVLL----ADFMLEFRFEYLWPFWLLLRSVYDSFKY 70 (697)
T ss_pred chhhccchhhccccccccchHHHHHHHH------------HHHHHHHH----HHHHhhhHHHHHHHHHHHHHHHHHHHhh
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHhhc---ChhHHHHHHHHH-----HHHHHHHHHHHHHHh
Q 010385 140 RIVSFMSFLLLVDSLFLYSSVKFLLQTR---QASVSLFFSFEY-----MILATTTVSIFVKYV 194 (512)
Q Consensus 140 R~~~~l~~ll~~d~~~~~~~~~~~~~~~---~~~~~l~f~fE~-----~il~~~~~~~~~~y~ 194 (512)
+-+.|-+++..+-+.....|+-++.-.| ..++++|+-+-+ +.+.+..+-+++.|+
T Consensus 71 ~~~~~~~~~~~~~~~~d~~~~~~~p~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~~~ 133 (697)
T PF09726_consen 71 QGLAFSVFFVCIAFTSDLICLFFIPVHWLFFAASTYVWVQYVWHTDRGICLPTVSLWILFVYV 133 (697)
T ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHhhhccCCccHHHHHHHHHHHHH
No 156
>PF02318 FYVE_2: FYVE-type zinc finger; InterPro: IPR003315 This entry represents the zinc-binding domain found in rabphilin Rab3A. The small G protein Rab3A plays an important role in the regulation of neurotransmitter release. The crystal structure of the small G protein Rab3A complexed with the effector domain of rabphilin-3A shows that the effector domain of rabphilin-3A contacts Rab3A in two distinct areas. The first interface involves the Rab3A switch I and switch II regions, which are sensitive to the nucleotide-binding state of Rab3A. The second interface consists of a deep pocket in Rab3A that interacts with a SGAWFF structural element of rabphilin-3A. Sequence and structure analysis, and biochemical data suggest that this pocket, or Rab complementarity-determining region (RabCDR), establishes a specific interaction between each Rab protein and its effectors. It has been suggested that RabCDRs could be major determinants of effector specificity during vesicle trafficking and fusion [].; GO: 0008270 zinc ion binding, 0017137 Rab GTPase binding, 0006886 intracellular protein transport; PDB: 2CSZ_A 2ZET_C 1ZBD_B 3BC1_B 2CJS_C 2A20_A.
Probab=31.43 E-value=24 Score=30.54 Aligned_cols=30 Identities=17% Similarity=0.399 Sum_probs=18.9
Q ss_pred CCCccccccccccc----Ce-EeccCcccChhhHH
Q 010385 288 SDSTCIICREEMTT----AK-KLICGHLFHVHCLR 317 (512)
Q Consensus 288 ~~~~C~IC~~~~~~----~~-~l~C~H~fh~~Cl~ 317 (512)
++..|.+|...+.- +. -..|+|..|..|-.
T Consensus 53 ~~~~C~~C~~~fg~l~~~~~~C~~C~~~VC~~C~~ 87 (118)
T PF02318_consen 53 GERHCARCGKPFGFLFNRGRVCVDCKHRVCKKCGV 87 (118)
T ss_dssp CCSB-TTTS-BCSCTSTTCEEETTTTEEEETTSEE
T ss_pred CCcchhhhCCcccccCCCCCcCCcCCccccCccCC
Confidence 46789999987642 21 23588888888853
No 157
>KOG2302 consensus T-type voltage-gated Ca2+ channel, pore-forming alpha1I subunit [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=31.11 E-value=1e+03 Score=28.70 Aligned_cols=19 Identities=11% Similarity=0.170 Sum_probs=9.0
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q 010385 174 FFSFEYMILATTTVSIFVK 192 (512)
Q Consensus 174 ~f~fE~~il~~~~~~~~~~ 192 (512)
+.++-|++++-....-+.|
T Consensus 1265 liccaffiiFgilgvqLFk 1283 (1956)
T KOG2302|consen 1265 LICCAFFIIFGILGVQLFK 1283 (1956)
T ss_pred HHHHHHHHHHHHHHHHHhc
Confidence 3455555555444333444
No 158
>PF10497 zf-4CXXC_R1: Zinc-finger domain of monoamine-oxidase A repressor R1; InterPro: IPR018866 R1 is a transcription factor repressor that inhibits monoamine oxidase A gene expression. This domain is a four-CXXC zinc finger putative DNA-binding domain found at the C-terminal end of R1. The domain carries 12 cysteines of which four pairs are of the CXXC type [].
Probab=29.84 E-value=50 Score=28.09 Aligned_cols=43 Identities=33% Similarity=0.683 Sum_probs=27.9
Q ss_pred CCcccccccccccCe--------Eecc---CcccChhhHHHHHhc---------CCCCCCCCC
Q 010385 289 DSTCIICREEMTTAK--------KLIC---GHLFHVHCLRSWLER---------QHTCPTCRA 331 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~--------~l~C---~H~fh~~Cl~~wl~~---------~~~CP~Cr~ 331 (512)
...|-.|+..-.+.+ .-.| .=.||..||..+... +-.||.||.
T Consensus 7 g~~CHqCrqKt~~~~~~C~~~~~~~~C~~~~~~fC~~CL~~ryge~~~ev~~~~~W~CP~Crg 69 (105)
T PF10497_consen 7 GKTCHQCRQKTLDFKTICTGHWKNSSCRGCRGKFCGGCLRNRYGENVEEVLEDPNWKCPKCRG 69 (105)
T ss_pred CCCchhhcCCCCCCceEcCCCCCCCCCccCcceehHhHHHHHHhhhHHHHhcCCceECCCCCC
Confidence 456777776433221 2235 556999999988753 235999987
No 159
>KOG1818 consensus Membrane trafficking and cell signaling protein HRS, contains VHS and FYVE domains [Signal transduction mechanisms; Intracellular trafficking, secretion, and vesicular transport]
Probab=27.55 E-value=69 Score=35.81 Aligned_cols=31 Identities=23% Similarity=0.554 Sum_probs=23.4
Q ss_pred CCcccccccccccCe----EeccCcccChhhHHHH
Q 010385 289 DSTCIICREEMTTAK----KLICGHLFHVHCLRSW 319 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~----~l~C~H~fh~~Cl~~w 319 (512)
..+|-.|...|..-. ...||-+||..|-..-
T Consensus 165 ~~~C~rCr~~F~~~~rkHHCr~CG~vFC~qcss~s 199 (634)
T KOG1818|consen 165 SEECLRCRVKFGLTNRKHHCRNCGQVFCGQCSSKS 199 (634)
T ss_pred ccccceeeeeeeeccccccccccchhhccCccccc
Confidence 378999999886432 3469999999996543
No 160
>cd00350 rubredoxin_like Rubredoxin_like; nonheme iron binding domain containing a [Fe(SCys)4] center. The family includes rubredoxins, a small electron transfer protein, and a slightly smaller modular rubredoxin domain present in rubrerythrin and nigerythrin and detected either N- or C-terminal to such proteins as flavin reductase, NAD(P)H-nitrite reductase, and ferredoxin-thioredoxin reductase. In rubredoxin, the iron atom is coordinated by four cysteine residues (Fe(S-Cys)4), but iron can also be replaced by cobalt, nickel or zinc and believed to be involved in electron transfer. Rubrerythrins and nigerythrins are small homodimeric proteins, generally consisting of 2 domains: a rubredoxin domain C-terminal to a non-sulfur, oxo-bridged diiron site in the N-terminal rubrerythrin domain. Rubrerythrins and nigerythrins have putative peroxide activity.
Probab=27.07 E-value=40 Score=22.15 Aligned_cols=11 Identities=36% Similarity=0.851 Sum_probs=7.6
Q ss_pred cCCCCCCCCCc
Q 010385 322 RQHTCPTCRAL 332 (512)
Q Consensus 322 ~~~~CP~Cr~~ 332 (512)
....||.|..+
T Consensus 16 ~~~~CP~Cg~~ 26 (33)
T cd00350 16 APWVCPVCGAP 26 (33)
T ss_pred CCCcCcCCCCc
Confidence 34579999653
No 161
>PF01363 FYVE: FYVE zinc finger; InterPro: IPR000306 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. The FYVE zinc finger is named after four proteins that it has been found in: Fab1, YOTB/ZK632.12, Vac1, and EEA1. The FYVE finger has been shown to bind two zinc ions []. The FYVE finger has eight potential zinc coordinating cysteine positions. Many members of this family also include two histidines in a motif R+HHC+XCG, where + represents a charged residue and X any residue. FYVE-type domains are divided into two known classes: FYVE domains that specifically bind to phosphatidylinositol 3-phosphate in lipid bilayers and FYVE-related domains of undetermined function []. Those that bind to phosphatidylinositol 3-phosphate are often found in proteins targeted to lipid membranes that are involved in regulating membrane traffic [, , ]. Most FYVE domains target proteins to endosomes by binding specifically to phosphatidylinositol-3-phosphate at the membrane surface. By contrast, the CARP2 FYVE-like domain is not optimized to bind to phosphoinositides or insert into lipid bilayers. FYVE domains are distinguished from other zinc fingers by three signature sequences: an N-terminal WxxD motif, a basic R(R/K)HHCR patch, and a C-terminal RVC motif. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0046872 metal ion binding; PDB: 1HYI_A 1JOC_B 1HYJ_A 1DVP_A 3ZYQ_A 4AVX_A 1VFY_A 3T7L_A 1X4U_A 1WFK_A ....
Probab=26.66 E-value=25 Score=26.98 Aligned_cols=33 Identities=21% Similarity=0.628 Sum_probs=17.1
Q ss_pred CCCcccccccccccCeEe----ccCcccChhhHHHHH
Q 010385 288 SDSTCIICREEMTTAKKL----ICGHLFHVHCLRSWL 320 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l----~C~H~fh~~Cl~~wl 320 (512)
+...|.+|...|.--..- .||++||..|.....
T Consensus 8 ~~~~C~~C~~~F~~~~rrhhCr~CG~~vC~~Cs~~~~ 44 (69)
T PF01363_consen 8 EASNCMICGKKFSLFRRRHHCRNCGRVVCSSCSSQRI 44 (69)
T ss_dssp G-SB-TTT--B-BSSS-EEE-TTT--EEECCCS-EEE
T ss_pred CCCcCcCcCCcCCCceeeEccCCCCCEECCchhCCEE
Confidence 456899999999653321 599999999976543
No 162
>KOG4193 consensus G protein-coupled receptors [Signal transduction mechanisms]
Probab=26.28 E-value=9.8e+02 Score=27.01 Aligned_cols=72 Identities=18% Similarity=0.376 Sum_probs=40.9
Q ss_pred HHHHHHHHHHHHHHHhccCCcHHHHHHHHHh--hHHHHHHHHHhhhhccccchh---HHHHHHHHHHHHHHHHHHHhh
Q 010385 50 GLVIMCILWQLIKKVFLGSLREAEVERLNEQ--SRREIMEILFAITIFRQDFSV---SFLAMVTTLLLIKALHWLAQK 122 (512)
Q Consensus 50 ~~~~~~~~~~~~~~~ffG~Lr~~E~e~l~e~--~~~~v~~~lf~~~if~~~~~~---~~l~~~~~ll~lk~~h~l~~d 122 (512)
++.+.+++.-++.+++|-+++... -.+.-. +=-++.+++|.+.++.....+ ..++.+....+|..|-|+.-+
T Consensus 331 ~iSlvcL~lti~ty~~~~~l~~~~-~~i~~~l~~~L~l~~l~fL~~~~~~~~~~~~C~~~a~llhff~LaaF~Wm~le 407 (610)
T KOG4193|consen 331 IISLVCLLLTIATYLLFRKLQNDR-TKIHINLCLCLFLAELLFLLGIDRTSTSVVLCIAAAILLHFFFLAAFFWMLLE 407 (610)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhhc-chhHHHHHHHHHHHHHHHhcccccccCcccccHHHHHHHHHHHHHHHHHHHHH
Confidence 344555556666777777777776 222222 222444667777777654443 334444455667777777743
No 163
>PLN02915 cellulose synthase A [UDP-forming], catalytic subunit
Probab=25.69 E-value=73 Score=37.70 Aligned_cols=47 Identities=23% Similarity=0.563 Sum_probs=33.1
Q ss_pred CCCcccccccccccCe----Eec---cCcccChhhHHH-HHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAK----KLI---CGHLFHVHCLRS-WLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~----~l~---C~H~fh~~Cl~~-wl~~~~~CP~Cr~~~~ 334 (512)
....|.||-|+..... -.. |+---|..|.+- .-+.++.||.|+....
T Consensus 14 ~~~~c~iCGd~vg~~~~Ge~FVAC~eC~fpvCr~cyeye~~~g~~~cp~c~t~y~ 68 (1044)
T PLN02915 14 DAKTCRVCGDEVGVKEDGQPFVACHVCGFPVCKPCYEYERSEGNQCCPQCNTRYK 68 (1044)
T ss_pred CcchhhccccccCcCCCCCEEEEeccCCCccccchhhhhhhcCCccCCccCCchh
Confidence 4568999999975431 234 555599999843 2244788999988875
No 164
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=25.62 E-value=50 Score=33.47 Aligned_cols=43 Identities=7% Similarity=-0.217 Sum_probs=34.6
Q ss_pred CCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCcc
Q 010385 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALV 333 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~ 333 (512)
..+|-.|-+....-.-.+|+|. ||.+|.. +.-..+||+|....
T Consensus 343 ~~~~~~~~~~~~st~~~~~~~n~~~~~~a~--~s~~~~~~~c~~~~ 386 (394)
T KOG2113|consen 343 SLKGTSAGFGLLSTIWSGGNMNLSPGSLAS--ASASPTSSTCDHND 386 (394)
T ss_pred hcccccccCceeeeEeecCCcccChhhhhh--cccCCccccccccc
Confidence 4678889888777778899996 8999976 56688999997654
No 165
>smart00249 PHD PHD zinc finger. The plant homeodomain (PHD) finger is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in epigenetics and chromatin-mediated transcriptional regulation. The PHD finger binds two zinc ions using the so-called 'cross-brace' motif and is thus structurally related to the KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=25.33 E-value=86 Score=35.48 Aligned_cols=43 Identities=23% Similarity=0.549 Sum_probs=26.1
Q ss_pred CCCCcccccccccccCe-------------EeccCcccChhhHHHHHhcCCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTTAK-------------KLICGHLFHVHCLRSWLERQHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~-------------~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~ 333 (512)
..+..|+-|...+..+. ...|+|.-|..=| .+.+.||+|...+
T Consensus 1129 ~~~~~c~ec~~kfP~CiasG~pIt~~~fWlC~~CkH~a~~~EI----s~y~~CPLCHs~~ 1184 (1189)
T KOG2041|consen 1129 PYDLQCSECQTKFPVCIASGRPITDNIFWLCPRCKHRAHQHEI----SKYNCCPLCHSME 1184 (1189)
T ss_pred ccCCCChhhcCcCceeeccCCccccceEEEccccccccccccc----cccccCccccChh
Confidence 34456666666654332 1138887776554 3467899997655
No 167
>KOG2231 consensus Predicted E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=24.22 E-value=58 Score=36.67 Aligned_cols=44 Identities=27% Similarity=0.558 Sum_probs=28.0
Q ss_pred cccccccccccCeEeccCc-ccChhhHHHHHhc------CCCCCCCCCccC
Q 010385 291 TCIICREEMTTAKKLICGH-LFHVHCLRSWLER------QHTCPTCRALVV 334 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l~C~H-~fh~~Cl~~wl~~------~~~CP~Cr~~~~ 334 (512)
.|+||-...+-...=.||| .-|..|..+.... ...||.||.++.
T Consensus 2 ~c~ic~~s~~~~~~~s~~h~~v~~~~~~R~~~~~~~~~~~~~~~vcr~~~~ 52 (669)
T KOG2231|consen 2 SCAICAFSPDFVGRGSCGHNEVCATCVVRLRFELNNRKCSNECPVCRREVE 52 (669)
T ss_pred CcceeecCccccccccccccccchhhhhhhhhhcccccccccCccccccee
Confidence 4777776666666666777 6777777665422 334677777654
No 168
>KOG0162 consensus Myosin class I heavy chain [Cytoskeleton]
Probab=24.08 E-value=5e+02 Score=29.81 Aligned_cols=12 Identities=25% Similarity=0.578 Sum_probs=5.7
Q ss_pred HHHHHHHHHHHH
Q 010385 248 ELYETFRNFRIR 259 (512)
Q Consensus 248 ~~~~~~~~~~~~ 259 (512)
.+.+.||++..|
T Consensus 701 ~IQkAWRrfv~r 712 (1106)
T KOG0162|consen 701 RIQKAWRRFVAR 712 (1106)
T ss_pred HHHHHHHHHHHH
Confidence 344555555443
No 169
>KOG2807 consensus RNA polymerase II transcription initiation/nucleotide excision repair factor TFIIH, subunit SSL1 [Transcription; Replication, recombination and repair]
Probab=23.97 E-value=89 Score=31.93 Aligned_cols=43 Identities=26% Similarity=0.676 Sum_probs=29.9
Q ss_pred CCcccccccccccCeEe---ccCcccChhhHHHHHhcCCCCCCCCC
Q 010385 289 DSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQHTCPTCRA 331 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~~~~CP~Cr~ 331 (512)
+..|-.|.++....... .|+|.||..|=.=.-+.-..||-|..
T Consensus 330 ~~~Cf~C~~~~~~~~~y~C~~Ck~~FCldCDv~iHesLh~CpgCeh 375 (378)
T KOG2807|consen 330 SRFCFACQGELLSSGRYRCESCKNVFCLDCDVFIHESLHNCPGCEH 375 (378)
T ss_pred CcceeeeccccCCCCcEEchhccceeeccchHHHHhhhhcCCCcCC
Confidence 45699997766554333 58999999994433355667999964
No 170
>PRK04023 DNA polymerase II large subunit; Validated
Probab=23.66 E-value=55 Score=38.42 Aligned_cols=50 Identities=18% Similarity=0.402 Sum_probs=33.2
Q ss_pred ccCCCCcccccccccccCeEeccCc-----ccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 285 LDASDSTCIICREEMTTAKKLICGH-----LFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 285 ~~~~~~~C~IC~~~~~~~~~l~C~H-----~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
+......|+-|-........-.||. .||..| .+......||.|...+.+.
T Consensus 622 VEVg~RfCpsCG~~t~~frCP~CG~~Te~i~fCP~C--G~~~~~y~CPKCG~El~~~ 676 (1121)
T PRK04023 622 VEIGRRKCPSCGKETFYRRCPFCGTHTEPVYRCPRC--GIEVEEDECEKCGREPTPY 676 (1121)
T ss_pred ecccCccCCCCCCcCCcccCCCCCCCCCcceeCccc--cCcCCCCcCCCCCCCCCcc
Confidence 3445678999988753333334883 599999 3334456799998887643
No 171
>PF07975 C1_4: TFIIH C1-like domain; InterPro: IPR004595 All proteins in this domain for which functions are known are components of the TFIIH complex which is involved in the initiation of transcription and nucleotide excision repair. It includes the yeast transcription factor Ssl1 (Suppressor of stem-loop protein 1) that is essential for translation initiation and affects UV resistance. The C-terminal region is essential for transcription activity. This regions binds three zinc atoms through two independent domain. The first contains a C4 zinc finger motif, whereas the second is characterised by a CX(2)CX(2-4)FCADCD motif. The solution structure of the second C-terminal domain revealed homology with the regulatory domain of protein kinase C [].; GO: 0006281 DNA repair, 0005634 nucleus; PDB: 1Z60_A.
Probab=23.03 E-value=67 Score=23.63 Aligned_cols=24 Identities=33% Similarity=0.942 Sum_probs=13.2
Q ss_pred ccCcccChhhHHHHH-hcCCCCCCCC
Q 010385 306 ICGHLFHVHCLRSWL-ERQHTCPTCR 330 (512)
Q Consensus 306 ~C~H~fh~~Cl~~wl-~~~~~CP~Cr 330 (512)
.|++.||.+|= -.+ +.-..||-|-
T Consensus 26 ~C~~~FC~dCD-~fiHE~LH~CPGC~ 50 (51)
T PF07975_consen 26 KCKNHFCIDCD-VFIHETLHNCPGCE 50 (51)
T ss_dssp TTT--B-HHHH-HTTTTTS-SSSTT-
T ss_pred CCCCccccCcC-hhhhccccCCcCCC
Confidence 48999999993 322 4456799883
No 172
>KOG1924 consensus RhoA GTPase effector DIA/Diaphanous [Signal transduction mechanisms; Cytoskeleton]
Probab=22.84 E-value=3.6e+02 Score=31.11 Aligned_cols=79 Identities=20% Similarity=0.188 Sum_probs=0.0
Q ss_pred CCCCCcccCCCCCCCCCCCCCCCCCCcccccccccCCCCCCccCCCCCCC-----CCCCCCCCCcccccccCCCCCCCCC
Q 010385 401 PSPNTLVWSPGYVVLPQANRPLGDYTSVELGQEQASAGQPQQFVNPGGSA-----TFSFPQFPQSVFVPFQTPDANLIGG 475 (512)
Q Consensus 401 ps~~~~~~sp~~s~~p~~~~~~~~~~s~~~~~~~~ss~~~q~~~~~~~~~-----~~s~p~~~~~~~~p~~~~~~~g~~~ 475 (512)
++.+......+....|+..++.|.......++...-.+.+..+.+|++.+ +...||.++.-..|.-+|...+.|+
T Consensus 515 ~s~~~~~~~~~~iP~PP~~pp~gG~g~pppPppPPlpggag~PPPPpplPg~aG~PPpPppppg~~gppPPPpp~g~~Gg 594 (1102)
T KOG1924|consen 515 SSPSQLLPIDGGIPPPPPLPPTGGTGPPPPPPPPPLPGGAGPPPPPPPLPGIAGGPPPPPPPPGGGGPPPPPPPGGFLGG 594 (1102)
T ss_pred cCcccCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCccCCCCCcccCCCCccCCCCCCCCCCCcCCCCCCCCC
Q ss_pred CCCC
Q 010385 476 ERLP 479 (512)
Q Consensus 476 ~~~~ 479 (512)
..-|
T Consensus 595 ~ppP 598 (1102)
T KOG1924|consen 595 PPPP 598 (1102)
T ss_pred CCCC
No 173
>KOG0260 consensus RNA polymerase II, large subunit [Transcription]
Probab=22.65 E-value=1.5e+03 Score=27.85 Aligned_cols=22 Identities=14% Similarity=0.188 Sum_probs=13.2
Q ss_pred CCCcccccccccccCeEeccCc
Q 010385 288 SDSTCIICREEMTTAKKLICGH 309 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H 309 (512)
+.+.|.-|.|..--+-.-|||.
T Consensus 1390 ekd~~rgvsEnImlgqlap~gT 1411 (1605)
T KOG0260|consen 1390 EKDPCRGVSENIMLGQLAPMGT 1411 (1605)
T ss_pred ccCCCccceeeeeecccccCCC
Confidence 4456666766665555556664
No 174
>KOG3799 consensus Rab3 effector RIM1 and related proteins, contain Rab3a binding domain [Intracellular trafficking, secretion, and vesicular transport]
Probab=22.59 E-value=1.4e+02 Score=26.43 Aligned_cols=20 Identities=40% Similarity=0.871 Sum_probs=13.2
Q ss_pred CCCCcccccccc-cccCeEeccCcc
Q 010385 287 ASDSTCIICREE-MTTAKKLICGHL 310 (512)
Q Consensus 287 ~~~~~C~IC~~~-~~~~~~l~C~H~ 310 (512)
..+.+|.||... |.+ -|||.
T Consensus 63 ~ddatC~IC~KTKFAD----G~GH~ 83 (169)
T KOG3799|consen 63 GDDATCGICHKTKFAD----GCGHN 83 (169)
T ss_pred CcCcchhhhhhccccc----ccCcc
Confidence 346799999864 222 37885
No 175
>KOG2113 consensus Predicted RNA binding protein, contains KH domain [General function prediction only]
Probab=22.06 E-value=37 Score=34.36 Aligned_cols=46 Identities=20% Similarity=0.251 Sum_probs=34.6
Q ss_pred CCcccccccccccCeEeccCc-ccChhhHHHH-HhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGH-LFHVHCLRSW-LERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H-~fh~~Cl~~w-l~~~~~CP~Cr~~~~ 334 (512)
.-.|.+|++.-......+|+| +||..|.-+- .++...||+|..-+.
T Consensus 136 ti~~iqq~tnt~I~T~v~~~~~Vf~Vtg~~~nC~kra~s~eie~ta~~ 183 (394)
T KOG2113|consen 136 TIKRIQQFTNTYIATPVRCGEPVFCVTGAPKNCVKRARSCEIEQTAVT 183 (394)
T ss_pred ccchheecccceEeeeccCCCceEEEecCCcchhhhccccchhhhhhh
Confidence 356888888766666778998 5999997665 566778999976554
No 176
>PF05539 Pneumo_att_G: Pneumovirinae attachment membrane glycoprotein G; InterPro: IPR008781 This family of proteins contain the major surface glycoprotein of turkey rhinotracheitis virus (TRTV), avian pneumovirus (APV), the aetiological agent of turkey rhinotracheitis (TRT), and other Metapneumoviruses. The major surface glycoprotein is the attachment (G) protein, which, by analogy with other respiratory syncytial viruses (RSV), has been proposed to be responsible for virus binding to its cell receptor. The APV G gene and its predicted protein have several features in common with their RSV counterparts. Both G proteins are type II glycoproteins and both the RSV G and APV G proteins are heavily O-glycosylated. In both RSV and APV, the G protein is the most variable protein and is a major target for neutralizing antibodies [].
Probab=21.77 E-value=8.8e+02 Score=24.89 Aligned_cols=7 Identities=29% Similarity=0.591 Sum_probs=3.2
Q ss_pred CCCCCcc
Q 010385 327 PTCRALV 333 (512)
Q Consensus 327 P~Cr~~~ 333 (512)
|.||..+
T Consensus 151 ~~CrCt~ 157 (408)
T PF05539_consen 151 NFCRCTF 157 (408)
T ss_pred ceeEEEe
Confidence 4444444
No 177
>PF00628 PHD: PHD-finger; InterPro: IPR019787 Zinc finger (Znf) domains are relatively small protein motifs which contain multiple finger-like protrusions that make tandem contacts with their target molecule. Some of these domains bind zinc, but many do not; instead binding other metals such as iron, or no metal at all. For example, some family members form salt bridges to stabilise the finger-like folds. They were first identified as a DNA-binding motif in transcription factor TFIIIA from Xenopus laevis (African clawed frog), however they are now recognised to bind DNA, RNA, protein and/or lipid substrates [, , , , ]. Their binding properties depend on the amino acid sequence of the finger domains and of the linker between fingers, as well as on the higher-order structures and the number of fingers. Znf domains are often found in clusters, where fingers can have different binding specificities. There are many superfamilies of Znf motifs, varying in both sequence and structure. They display considerable versatility in binding modes, even between members of the same class (e.g. some bind DNA, others protein), suggesting that Znf motifs are stable scaffolds that have evolved specialised functions. For example, Znf-containing proteins function in gene transcription, translation, mRNA trafficking, cytoskeleton organisation, epithelial development, cell adhesion, protein folding, chromatin remodelling and zinc sensing, to name but a few []. Zinc-binding motifs are stable structures, and they rarely undergo conformational changes upon binding their target. This entry represents the PHD (homeodomain) zinc finger domain [,], which is a C4HC3 zinc-finger-like motif found in nuclear proteins thought to be involved in chromatin-mediated transcriptional regulation. The PHD finger motif is reminiscent of, but distinct from the C3HC4 type RING finger. The function of this domain is not yet known but in analogy with the LIM domain it could be involved in protein-protein interaction and be important for the assembly or activity of multicomponent complexes involved in transcriptional activation or repression. Alternatively, the interactions could be intra-molecular and be important in maintaining the structural integrity of the protein. In similarity to the RING finger and the LIM domain, the PHD finger is thought to bind two zinc ions. More information about these proteins can be found at Protein of the Month: Zinc Fingers [].; GO: 0005515 protein binding; PDB: 3ZVY_A 2LGG_A 3SOW_A 3SOU_B 3ASL_A 3ASK_A 3ZVZ_B 3T6R_A 2LGK_A 3SOX_B ....
Probab=21.48 E-value=44 Score=23.81 Aligned_cols=40 Identities=23% Similarity=0.679 Sum_probs=26.7
Q ss_pred cccccccccccCeEe---ccCcccChhhHHHHHhc------CCCCCCCC
Q 010385 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER------QHTCPTCR 330 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~------~~~CP~Cr 330 (512)
.|.||.........+ .|+..||..|+..=... .-.||.|+
T Consensus 1 ~C~vC~~~~~~~~~i~C~~C~~~~H~~C~~~~~~~~~~~~~~w~C~~C~ 49 (51)
T PF00628_consen 1 YCPVCGQSDDDGDMIQCDSCNRWYHQECVGPPEKAEEIPSGDWYCPNCR 49 (51)
T ss_dssp EBTTTTSSCTTSSEEEBSTTSCEEETTTSTSSHSHHSHHSSSBSSHHHH
T ss_pred eCcCCCCcCCCCCeEEcCCCChhhCcccCCCChhhccCCCCcEECcCCc
Confidence 388888855555555 47788999998764321 34577774
No 178
>PF11023 DUF2614: Protein of unknown function (DUF2614); InterPro: IPR020912 This entry describes proteins of unknown function, which are thought to be membrane proteins.; GO: 0005887 integral to plasma membrane
Probab=20.98 E-value=40 Score=28.94 Aligned_cols=24 Identities=17% Similarity=0.313 Sum_probs=17.3
Q ss_pred HHHhcCCCCCCCCCccCCCCCCCC
Q 010385 318 SWLERQHTCPTCRALVVPPENGAS 341 (512)
Q Consensus 318 ~wl~~~~~CP~Cr~~~~~~~~~~~ 341 (512)
+.+.+...|+.|++++.-+++...
T Consensus 80 KmLGr~D~CM~C~~pLTLd~~leg 103 (114)
T PF11023_consen 80 KMLGRVDACMHCKEPLTLDPSLEG 103 (114)
T ss_pred hhhchhhccCcCCCcCccCchhhc
Confidence 446667789999999976554443
No 179
>PF14311 DUF4379: Domain of unknown function (DUF4379)
Probab=20.20 E-value=58 Score=23.90 Aligned_cols=23 Identities=30% Similarity=0.736 Sum_probs=12.6
Q ss_pred ccCcccChhhHHHHHhcCCCCCCC
Q 010385 306 ICGHLFHVHCLRSWLERQHTCPTC 329 (512)
Q Consensus 306 ~C~H~fh~~Cl~~wl~~~~~CP~C 329 (512)
.|||.|-..=-.+ ......||.|
T Consensus 33 ~Cgh~w~~~v~~R-~~~~~~CP~C 55 (55)
T PF14311_consen 33 KCGHEWKASVNDR-TRRGKGCPYC 55 (55)
T ss_pred CCCCeeEccHhhh-ccCCCCCCCC
Confidence 3677654432222 2456679988
Done!