Query 010385
Match_columns 512
No_of_seqs 439 out of 2537
Neff 7.6
Searched_HMMs 29240
Date Mon Mar 25 05:40:25 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010385.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/010385hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1x4j_A Ring finger protein 38; 99.3 4.8E-13 1.6E-17 106.0 4.2 51 286-336 20-73 (75)
2 2ect_A Ring finger protein 126 99.3 1.4E-12 4.8E-17 104.0 6.3 53 286-338 12-67 (78)
3 2kiz_A E3 ubiquitin-protein li 99.3 1.3E-12 4.5E-17 101.6 5.1 50 287-336 12-64 (69)
4 1iym_A EL5; ring-H2 finger, ub 99.3 1E-12 3.5E-17 97.5 4.1 47 288-334 4-54 (55)
5 2ep4_A Ring finger protein 24; 99.3 2.3E-12 8E-17 101.6 5.4 50 287-336 13-65 (74)
6 2djb_A Polycomb group ring fin 99.3 3.6E-12 1.2E-16 100.1 6.1 51 287-337 13-64 (72)
7 2ea6_A Ring finger protein 4; 99.3 1.6E-12 5.4E-17 100.9 3.8 50 286-335 12-68 (69)
8 2l0b_A E3 ubiquitin-protein li 99.3 1.6E-12 5.4E-17 107.1 3.8 49 287-335 38-89 (91)
9 2d8t_A Dactylidin, ring finger 99.3 1.8E-12 6.2E-17 101.6 3.7 49 287-335 13-61 (71)
10 2ecl_A Ring-box protein 2; RNF 99.3 2.8E-12 9.4E-17 103.3 4.9 49 287-335 13-76 (81)
11 3ng2_A RNF4, snurf, ring finge 99.3 1.7E-12 5.8E-17 101.4 3.5 50 287-336 8-64 (71)
12 2ecm_A Ring finger and CHY zin 99.3 2.6E-12 8.8E-17 95.2 3.8 47 288-334 4-54 (55)
13 1chc_A Equine herpes virus-1 r 99.2 6.1E-12 2.1E-16 97.4 4.9 49 287-335 3-52 (68)
14 2xeu_A Ring finger protein 4; 99.2 3.1E-12 1.1E-16 97.6 3.0 49 288-336 2-57 (64)
15 2yur_A Retinoblastoma-binding 99.2 1.1E-11 3.9E-16 97.8 5.9 49 287-335 13-64 (74)
16 1v87_A Deltex protein 2; ring- 99.2 1.1E-11 3.8E-16 106.2 6.4 49 288-336 24-95 (114)
17 2ecy_A TNF receptor-associated 99.2 9.1E-12 3.1E-16 96.0 4.9 50 287-336 13-63 (66)
18 2ysl_A Tripartite motif-contai 99.2 1.1E-11 3.9E-16 97.3 5.3 50 287-336 18-70 (73)
19 2csy_A Zinc finger protein 183 99.2 8E-12 2.7E-16 100.4 4.0 48 287-334 13-60 (81)
20 3dpl_R Ring-box protein 1; ubi 99.2 9.6E-12 3.3E-16 105.2 4.1 48 287-334 35-100 (106)
21 2ecn_A Ring finger protein 141 99.2 6.8E-12 2.3E-16 97.8 2.5 49 287-336 13-61 (70)
22 4ayc_A E3 ubiquitin-protein li 99.2 6E-12 2E-16 111.8 2.5 46 289-334 53-98 (138)
23 1t1h_A Gspef-atpub14, armadill 99.1 1.8E-11 6.3E-16 97.4 4.1 49 287-335 6-55 (78)
24 2ct2_A Tripartite motif protei 99.1 2.5E-11 8.7E-16 98.8 4.7 50 287-336 13-69 (88)
25 2ysj_A Tripartite motif-contai 99.1 4.5E-11 1.5E-15 91.1 5.3 43 287-329 18-63 (63)
26 2ecv_A Tripartite motif-contai 99.1 6.3E-11 2.2E-15 95.5 6.5 49 287-335 17-71 (85)
27 2ecw_A Tripartite motif-contai 99.1 5.2E-11 1.8E-15 96.0 5.7 49 287-335 17-71 (85)
28 2egp_A Tripartite motif-contai 99.1 1.9E-11 6.4E-16 97.5 2.8 49 287-335 10-65 (79)
29 3ztg_A E3 ubiquitin-protein li 99.1 6.1E-11 2.1E-15 97.5 5.2 48 287-334 11-61 (92)
30 2ecj_A Tripartite motif-contai 99.1 7.9E-11 2.7E-15 88.0 4.3 43 287-329 13-58 (58)
31 3lrq_A E3 ubiquitin-protein li 99.1 3.3E-11 1.1E-15 100.9 2.3 48 288-335 21-70 (100)
32 4a0k_B E3 ubiquitin-protein li 99.0 2.2E-11 7.5E-16 104.5 0.4 48 287-334 46-111 (117)
33 2ckl_A Polycomb group ring fin 99.0 7.8E-11 2.7E-15 100.0 3.5 49 287-335 13-62 (108)
34 3fl2_A E3 ubiquitin-protein li 99.0 1.1E-10 3.7E-15 101.6 4.5 48 288-335 51-99 (124)
35 2y43_A E3 ubiquitin-protein li 99.0 8.3E-11 2.8E-15 98.2 3.4 48 288-335 21-69 (99)
36 2d8s_A Cellular modulator of i 99.0 1.9E-10 6.7E-15 92.1 4.8 50 287-336 13-71 (80)
37 3l11_A E3 ubiquitin-protein li 99.0 4.9E-11 1.7E-15 102.4 0.7 48 287-334 13-61 (115)
38 4ap4_A E3 ubiquitin ligase RNF 99.0 1.5E-10 5.1E-15 101.3 3.3 50 287-336 5-61 (133)
39 2kr4_A Ubiquitin conjugation f 99.0 2.3E-10 8E-15 92.8 4.2 49 287-335 12-60 (85)
40 1jm7_A BRCA1, breast cancer ty 99.0 2.9E-10 1E-14 96.8 5.0 47 289-335 21-70 (112)
41 1g25_A CDK-activating kinase a 99.0 2.3E-10 7.8E-15 87.8 3.8 48 289-336 3-56 (65)
42 1bor_A Transcription factor PM 99.0 1.8E-10 6.2E-15 85.8 2.8 49 287-338 4-52 (56)
43 2kre_A Ubiquitin conjugation f 99.0 2.2E-10 7.7E-15 95.8 3.3 49 287-335 27-75 (100)
44 1z6u_A NP95-like ring finger p 98.9 3.7E-10 1.3E-14 101.6 4.2 49 288-336 77-126 (150)
45 1wgm_A Ubiquitin conjugation f 98.9 4.4E-10 1.5E-14 93.6 4.3 49 287-335 20-69 (98)
46 2ct0_A Non-SMC element 1 homol 98.9 1.2E-09 4E-14 85.9 6.2 50 286-335 12-64 (74)
47 1rmd_A RAG1; V(D)J recombinati 98.9 2E-10 7E-15 98.6 1.2 48 288-335 22-70 (116)
48 2ckl_B Ubiquitin ligase protei 98.9 4.4E-10 1.5E-14 102.7 3.3 48 288-335 53-102 (165)
49 3hct_A TNF receptor-associated 98.9 4.2E-10 1.4E-14 97.1 2.9 49 287-335 16-65 (118)
50 2vje_A E3 ubiquitin-protein li 98.9 5.9E-10 2E-14 85.4 3.4 47 288-334 7-56 (64)
51 2vje_B MDM4 protein; proto-onc 98.9 6.1E-10 2.1E-14 85.0 3.2 48 287-334 5-55 (63)
52 4ap4_A E3 ubiquitin ligase RNF 98.9 4.4E-10 1.5E-14 98.3 2.3 51 286-336 69-126 (133)
53 2y1n_A E3 ubiquitin-protein li 98.8 1.2E-09 4.2E-14 111.8 4.4 47 289-335 332-379 (389)
54 2c2l_A CHIP, carboxy terminus 98.8 3.1E-09 1.1E-13 104.8 6.8 49 287-335 206-255 (281)
55 1e4u_A Transcriptional repress 98.8 4.6E-09 1.6E-13 83.7 6.4 50 287-336 9-63 (78)
56 1jm7_B BARD1, BRCA1-associated 98.8 1.5E-09 5.1E-14 93.4 3.4 45 288-334 21-66 (117)
57 3knv_A TNF receptor-associated 98.8 9.5E-10 3.3E-14 97.9 0.9 49 287-335 29-78 (141)
58 4ic3_A E3 ubiquitin-protein li 98.8 1.5E-09 5E-14 85.6 1.3 43 288-334 23-66 (74)
59 2yu4_A E3 SUMO-protein ligase 98.7 5.9E-09 2E-13 86.1 2.4 47 288-334 6-62 (94)
60 2ea5_A Cell growth regulator w 98.7 1.7E-08 5.9E-13 78.1 4.8 48 284-335 10-58 (68)
61 2f42_A STIP1 homology and U-bo 98.7 5.5E-09 1.9E-13 96.1 1.9 49 287-335 104-153 (179)
62 2ecg_A Baculoviral IAP repeat- 98.6 2E-08 6.9E-13 79.2 2.9 43 289-335 25-68 (75)
63 3hcs_A TNF receptor-associated 98.6 1.5E-08 5.1E-13 92.9 2.3 49 287-335 16-65 (170)
64 3k1l_B Fancl; UBC, ring, RWD, 98.5 4.3E-08 1.5E-12 97.5 4.0 49 287-335 306-373 (381)
65 2bay_A PRE-mRNA splicing facto 98.5 2.5E-08 8.6E-13 75.4 1.5 48 289-336 3-51 (61)
66 2yho_A E3 ubiquitin-protein li 98.5 3.5E-08 1.2E-12 78.7 1.7 43 289-335 18-61 (79)
67 1vyx_A ORF K3, K3RING; zinc-bi 98.4 1.5E-07 5.2E-12 70.8 3.8 48 287-334 4-58 (60)
68 3htk_C E3 SUMO-protein ligase 98.3 3E-07 1E-11 88.7 5.1 48 288-335 180-232 (267)
69 3t6p_A Baculoviral IAP repeat- 98.3 1.3E-07 4.5E-12 96.1 2.2 43 288-334 294-337 (345)
70 1wim_A KIAA0161 protein; ring 98.2 6.7E-07 2.3E-11 73.5 2.8 45 288-332 4-61 (94)
71 3vk6_A E3 ubiquitin-protein li 97.7 2.1E-05 7.3E-10 64.1 3.2 45 291-335 3-49 (101)
72 3nw0_A Non-structural maintena 97.6 5.3E-05 1.8E-09 72.9 5.3 47 289-335 180-229 (238)
73 2ko5_A Ring finger protein Z; 95.5 0.016 5.4E-07 46.4 4.9 47 288-336 27-74 (99)
74 3m62_A Ubiquitin conjugation f 93.8 0.073 2.5E-06 60.1 6.6 48 288-335 890-938 (968)
75 2jun_A Midline-1; B-BOX, TRIM, 92.5 0.049 1.7E-06 44.5 2.0 31 289-319 3-36 (101)
76 1wil_A KIAA1045 protein; ring 91.1 0.2 6.9E-06 39.3 3.9 32 287-319 13-47 (89)
77 2lri_C Autoimmune regulator; Z 91.0 0.17 5.7E-06 38.3 3.3 44 287-333 10-60 (66)
78 1mm2_A MI2-beta; PHD, zinc fin 79.0 0.82 2.8E-05 33.7 1.7 45 286-333 6-57 (61)
79 2cs3_A Protein C14ORF4, MY039 77.0 2.4 8.3E-05 32.8 3.8 36 287-322 13-52 (93)
80 3u5n_A E3 ubiquitin-protein li 76.6 0.64 2.2E-05 43.2 0.7 44 287-333 5-55 (207)
81 3o36_A Transcription intermedi 76.4 1.7 5.9E-05 39.4 3.5 43 288-333 3-52 (184)
82 1weo_A Cellulose synthase, cat 72.3 17 0.00057 28.8 7.6 49 288-336 15-71 (93)
83 1fp0_A KAP-1 corepressor; PHD 71.2 3.3 0.00011 33.0 3.5 44 286-332 22-72 (88)
84 1f62_A Transcription factor WS 69.1 1.9 6.5E-05 30.3 1.5 41 291-331 2-49 (51)
85 2l5u_A Chromodomain-helicase-D 68.4 1.4 4.7E-05 32.5 0.7 43 287-332 9-58 (61)
86 2k16_A Transcription initiatio 63.9 1.1 3.8E-05 34.4 -0.7 47 288-334 17-70 (75)
87 2ysm_A Myeloid/lymphoid or mix 62.4 2.4 8.1E-05 35.1 1.1 44 287-330 5-55 (111)
88 2ro1_A Transcription intermedi 62.4 2.5 8.7E-05 38.6 1.4 44 289-332 2-49 (189)
89 2yql_A PHD finger protein 21A; 60.8 0.91 3.1E-05 32.8 -1.6 42 287-331 7-55 (56)
90 2puy_A PHD finger protein 21A; 60.7 0.62 2.1E-05 34.2 -2.6 44 287-333 3-53 (60)
91 3lqh_A Histone-lysine N-methyl 58.8 3.7 0.00013 37.3 1.8 45 289-333 2-64 (183)
92 2e6r_A Jumonji/ARID domain-con 57.8 1.3 4.6E-05 35.5 -1.2 46 287-332 14-66 (92)
93 2lv9_A Histone-lysine N-methyl 57.1 3.8 0.00013 33.1 1.4 42 289-331 28-75 (98)
94 1wen_A Inhibitor of growth fam 54.9 12 0.00041 28.3 3.8 42 288-333 15-66 (71)
95 1weu_A Inhibitor of growth fam 53.6 12 0.0004 29.9 3.7 41 289-333 36-86 (91)
96 1we9_A PHD finger family prote 53.2 1.8 6E-05 32.0 -1.2 46 287-332 4-58 (64)
97 3v43_A Histone acetyltransfera 50.7 4.5 0.00015 33.5 0.9 42 290-331 62-111 (112)
98 1xwh_A Autoimmune regulator; P 50.4 2.5 8.6E-05 31.5 -0.7 42 287-331 6-54 (66)
99 2lbm_A Transcriptional regulat 48.9 11 0.00037 32.7 3.1 46 286-331 60-116 (142)
100 3shb_A E3 ubiquitin-protein li 48.3 3.9 0.00013 31.6 0.1 41 291-331 28-76 (77)
101 2dar_A PDZ and LIM domain prot 45.9 14 0.00048 28.8 3.1 40 288-335 24-63 (90)
102 3i2d_A E3 SUMO-protein ligase 45.1 13 0.00045 37.4 3.4 45 289-334 249-299 (371)
103 1wev_A Riken cDNA 1110020M19; 44.4 3 0.0001 33.1 -1.1 47 288-334 15-74 (88)
104 1x62_A C-terminal LIM domain p 42.0 23 0.00077 26.8 3.7 39 288-334 14-52 (79)
105 4fo9_A E3 SUMO-protein ligase 41.9 17 0.00057 36.5 3.5 46 289-335 215-266 (360)
106 1wem_A Death associated transc 41.0 6.2 0.00021 30.1 0.2 46 286-332 13-70 (76)
107 1wep_A PHF8; structural genomi 40.6 21 0.00072 27.3 3.3 46 287-333 10-64 (79)
108 2e6s_A E3 ubiquitin-protein li 40.0 8.4 0.00029 29.7 0.8 42 290-331 27-76 (77)
109 3ask_A E3 ubiquitin-protein li 38.7 7.5 0.00026 36.4 0.4 41 291-331 176-224 (226)
110 1y02_A CARP2, FYVE-ring finger 38.7 2.7 9.3E-05 35.5 -2.4 45 288-332 18-66 (120)
111 2d8x_A Protein pinch; LIM doma 37.0 23 0.0008 25.8 2.9 39 289-335 5-43 (70)
112 2cor_A Pinch protein; LIM doma 36.9 30 0.001 26.1 3.6 40 288-335 14-53 (79)
113 2gmg_A Hypothetical protein PF 36.8 10 0.00034 31.1 0.8 28 303-335 69-96 (105)
114 3ql9_A Transcriptional regulat 35.9 24 0.00081 30.0 3.1 47 286-332 54-111 (129)
115 4gne_A Histone-lysine N-methyl 35.9 25 0.00084 28.9 3.1 43 287-334 13-64 (107)
116 1x64_A Alpha-actinin-2 associa 35.5 38 0.0013 26.1 4.1 40 288-335 24-63 (89)
117 2d8z_A Four and A half LIM dom 35.0 28 0.00094 25.4 3.1 38 289-334 5-42 (70)
118 1z2q_A LM5-1; membrane protein 34.7 18 0.00062 28.1 2.0 32 288-319 20-55 (84)
119 2cur_A Skeletal muscle LIM-pro 34.7 29 0.001 25.2 3.2 38 289-334 5-42 (69)
120 1joc_A EEA1, early endosomal a 34.1 17 0.00058 30.7 1.9 30 289-318 69-102 (125)
121 3v43_A Histone acetyltransfera 34.0 38 0.0013 27.7 4.0 42 289-330 5-62 (112)
122 3asl_A E3 ubiquitin-protein li 33.3 12 0.00042 28.1 0.8 41 291-331 20-68 (70)
123 2yw8_A RUN and FYVE domain-con 32.9 21 0.0007 27.7 2.1 30 289-318 19-52 (82)
124 1zbd_B Rabphilin-3A; G protein 32.7 93 0.0032 26.4 6.4 30 287-316 53-87 (134)
125 3t7l_A Zinc finger FYVE domain 32.6 19 0.00066 28.4 1.9 33 288-320 19-55 (90)
126 2cu8_A Cysteine-rich protein 2 32.6 22 0.00075 26.5 2.2 38 289-334 9-47 (76)
127 1x4u_A Zinc finger, FYVE domai 32.4 19 0.00066 27.9 1.9 29 288-316 13-45 (84)
128 1nyp_A Pinch protein; LIM doma 32.4 22 0.00075 25.7 2.1 38 289-334 5-42 (66)
129 1wd2_A Ariadne-1 protein homol 32.0 13 0.00044 27.1 0.7 35 289-323 6-48 (60)
130 1vfy_A Phosphatidylinositol-3- 31.8 23 0.00078 26.7 2.1 30 289-318 11-44 (73)
131 1x4l_A Skeletal muscle LIM-pro 31.0 33 0.0011 25.1 2.9 38 289-334 5-46 (72)
132 2fiy_A Protein FDHE homolog; F 31.0 14 0.00048 36.3 1.0 46 287-332 180-231 (309)
133 2d8v_A Zinc finger FYVE domain 30.7 25 0.00085 26.2 2.0 32 287-319 6-38 (67)
134 2o35_A Hypothetical protein DU 30.4 18 0.00061 29.2 1.3 13 310-322 42-54 (105)
135 1v6g_A Actin binding LIM prote 30.4 34 0.0012 25.8 3.0 39 289-335 15-53 (81)
136 3fyb_A Protein of unknown func 30.3 18 0.00061 29.1 1.3 13 310-322 41-53 (104)
137 1zfo_A LAsp-1; LIM domain, zin 29.4 25 0.00086 21.8 1.6 27 290-316 4-31 (31)
138 1wig_A KIAA1808 protein; LIM d 29.0 33 0.0011 25.5 2.6 38 289-334 5-42 (73)
139 3mpx_A FYVE, rhogef and PH dom 28.3 12 0.00042 38.1 0.0 45 289-333 375-430 (434)
140 1x6a_A LIMK-2, LIM domain kina 28.2 38 0.0013 25.5 2.9 38 289-334 15-52 (81)
141 1x68_A FHL5 protein; four-and- 28.0 32 0.0011 25.6 2.4 38 289-334 5-46 (76)
142 3mjh_B Early endosome antigen 27.8 6.8 0.00023 25.3 -1.3 15 289-303 5-19 (34)
143 2zet_C Melanophilin; complex, 27.5 1.4E+02 0.0048 25.9 6.7 29 288-316 67-100 (153)
144 1wfk_A Zinc finger, FYVE domai 27.0 24 0.00083 27.7 1.5 31 288-318 8-42 (88)
145 1wyh_A SLIM 2, skeletal muscle 26.9 51 0.0017 24.0 3.3 39 289-335 5-45 (72)
146 1z60_A TFIIH basal transcripti 26.9 47 0.0016 24.1 2.9 40 290-329 16-58 (59)
147 1dvp_A HRS, hepatocyte growth 26.7 23 0.00079 32.8 1.6 30 289-318 161-194 (220)
148 2dlo_A Thyroid receptor-intera 26.4 38 0.0013 25.5 2.6 39 288-334 14-52 (81)
149 3zyq_A Hepatocyte growth facto 26.3 25 0.00087 32.7 1.8 31 289-319 164-198 (226)
150 2cuq_A Four and A half LIM dom 26.2 44 0.0015 25.0 2.9 38 289-334 15-52 (80)
151 2yt5_A Metal-response element- 25.7 27 0.00093 25.5 1.6 47 287-333 4-62 (66)
152 2co8_A NEDD9 interacting prote 25.5 61 0.0021 24.5 3.7 40 288-335 14-54 (82)
153 1x3h_A Leupaxin; paxillin fami 25.3 42 0.0014 25.1 2.6 39 289-335 15-53 (80)
154 2l43_A N-teminal domain from h 25.2 50 0.0017 25.8 3.1 47 287-333 23-76 (88)
155 1x4k_A Skeletal muscle LIM-pro 25.1 41 0.0014 24.5 2.5 38 289-334 5-44 (72)
156 1wew_A DNA-binding family prot 24.8 17 0.00059 27.8 0.3 45 288-333 15-73 (78)
157 1x63_A Skeletal muscle LIM-pro 24.2 49 0.0017 24.9 2.8 39 289-335 15-55 (82)
158 2ri7_A Nucleosome-remodeling f 24.2 8.3 0.00028 34.3 -2.0 44 288-332 7-59 (174)
159 2kwj_A Zinc finger protein DPF 24.1 35 0.0012 28.1 2.1 30 290-319 2-41 (114)
160 1x61_A Thyroid receptor intera 23.9 62 0.0021 23.5 3.3 38 289-334 5-44 (72)
161 2dj7_A Actin-binding LIM prote 23.9 57 0.0019 24.7 3.2 39 288-334 14-53 (80)
162 2ysm_A Myeloid/lymphoid or mix 23.5 13 0.00043 30.5 -0.8 42 291-332 56-104 (111)
163 2kgg_A Histone demethylase jar 23.4 22 0.00076 24.8 0.6 40 291-330 4-52 (52)
164 2l4z_A DNA endonuclease RBBP8, 22.3 34 0.0012 28.5 1.7 38 289-334 61-99 (123)
165 3o70_A PHD finger protein 13; 22.0 13 0.00045 27.8 -0.9 43 288-331 18-66 (68)
166 1iml_A CRIP, cysteine rich int 20.6 56 0.0019 24.1 2.5 11 290-300 28-38 (76)
167 2vnf_A ING 4, P29ING4, inhibit 20.4 17 0.00058 26.4 -0.6 39 289-331 10-58 (60)
No 1
>1x4j_A Ring finger protein 38; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=99.34 E-value=4.8e-13 Score=106.01 Aligned_cols=51 Identities=33% Similarity=0.892 Sum_probs=45.2
Q ss_pred cCCCCcccccccccccC---eEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 286 DASDSTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~---~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
...+..|+||++++..+ ..+||||.||..|+.+|+..+.+||+||+++.+.
T Consensus 20 ~~~~~~C~IC~~~~~~~~~~~~l~C~H~fh~~Ci~~w~~~~~~CP~Cr~~~~~~ 73 (75)
T 1x4j_A 20 QSEQTLCVVCMCDFESRQLLRVLPCNHEFHAKCVDKWLKANRTCPICRADSGPS 73 (75)
T ss_dssp SSSCCEETTTTEECCBTCEEEEETTTEEEETTHHHHHHHHCSSCTTTCCCCCCC
T ss_pred cCCCCCCeECCcccCCCCeEEEECCCCHhHHHHHHHHHHcCCcCcCcCCcCCCC
Confidence 34567899999999887 6789999999999999999999999999988653
No 2
>2ect_A Ring finger protein 126; metal binding protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=99.33 E-value=1.4e-12 Score=103.99 Aligned_cols=53 Identities=34% Similarity=0.883 Sum_probs=45.4
Q ss_pred cCCCCcccccccccccC---eEeccCcccChhhHHHHHhcCCCCCCCCCccCCCCC
Q 010385 286 DASDSTCIICREEMTTA---KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~---~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~~ 338 (512)
...+..|+||++.+..+ ..++|||.||..||.+|+..+.+||+||+.+.....
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~~~ 67 (78)
T 2ect_A 12 VGSGLECPVCKEDYALGESVRQLPCNHLFHDSCIVPWLEQHDSCPVCRKSLTGQNT 67 (78)
T ss_dssp SSSSCCCTTTTSCCCTTSCEEECTTSCEEETTTTHHHHTTTCSCTTTCCCCCCSCS
T ss_pred CCCCCCCeeCCccccCCCCEEEeCCCCeecHHHHHHHHHcCCcCcCcCCccCCccc
Confidence 35578999999999866 456999999999999999999999999999875443
No 3
>2kiz_A E3 ubiquitin-protein ligase arkadia; ring-H2 finger, E3 ligase, Zn binding domain, metal zinc, zinc-finger, metal binding protein; NMR {Homo sapiens}
Probab=99.31 E-value=1.3e-12 Score=101.63 Aligned_cols=50 Identities=32% Similarity=0.832 Sum_probs=43.6
Q ss_pred CCCCccccccccccc---CeEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~---~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
..+..|+||++.+.. ++.++|||.||..|+.+|+..+.+||+||+.+...
T Consensus 12 ~~~~~C~IC~~~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (69)
T 2kiz_A 12 DTEEKCTICLSILEEGEDVRRLPCMHLFHQVCVDQWLITNKKCPICRVDIEAQ 64 (69)
T ss_dssp TCCCSBTTTTBCCCSSSCEEECTTSCEEEHHHHHHHHHHCSBCTTTCSBSCSC
T ss_pred CCCCCCeeCCccccCCCcEEEeCCCCHHHHHHHHHHHHcCCCCcCcCccccCc
Confidence 456789999998854 46789999999999999999999999999998653
No 4
>1iym_A EL5; ring-H2 finger, ubiquitin ligase, DNA binding protein; NMR {Oryza sativa} SCOP: g.44.1.1
Probab=99.31 E-value=1e-12 Score=97.46 Aligned_cols=47 Identities=43% Similarity=0.963 Sum_probs=42.1
Q ss_pred CCCccccccccccc---CeEec-cCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTT---AKKLI-CGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~---~~~l~-C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
++..|+||++.+.. +..++ |||.||..|+.+|+.++.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~C~H~f~~~Ci~~w~~~~~~CP~Cr~~~~ 54 (55)
T 1iym_A 4 DGVECAVCLAELEDGEEARFLPRCGHGFHAECVDMWLGSHSTCPLCRLTVV 54 (55)
T ss_dssp CSCCCTTTCCCCCTTSCCEECSSSCCEECTTHHHHTTTTCCSCSSSCCCSC
T ss_pred CCCcCccCCccccCCCceEECCCCCCcccHHHHHHHHHcCCcCcCCCCEeE
Confidence 46789999999987 56777 9999999999999999999999999874
No 5
>2ep4_A Ring finger protein 24; zinc binding, ubiquitin, E3 enzyme, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.29 E-value=2.3e-12 Score=101.64 Aligned_cols=50 Identities=32% Similarity=0.775 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCeE---eccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTAKK---LICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~---l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
..+..|+||++.+..+.. ++|||.||..||.+|+..+.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~C~H~f~~~Ci~~~~~~~~~CP~Cr~~~~~~ 65 (74)
T 2ep4_A 13 NLHELCAVCLEDFKPRDELGICPCKHAFHRKCLIKWLEVRKVCPLCNMPVLQL 65 (74)
T ss_dssp CCSCBCSSSCCBCCSSSCEEEETTTEEEEHHHHHHHHHHCSBCTTTCCBCSSC
T ss_pred CCCCCCcCCCcccCCCCcEEEcCCCCEecHHHHHHHHHcCCcCCCcCcccccc
Confidence 446789999999987654 49999999999999999999999999998653
No 6
>2djb_A Polycomb group ring finger protein 6; PCGF6, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=3.6e-12 Score=100.10 Aligned_cols=51 Identities=24% Similarity=0.556 Sum_probs=45.9
Q ss_pred CCCCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccCCCC
Q 010385 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPPE 337 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~ 337 (512)
..+..|+||++.+.+++.+ +|||.||..||.+|+..+..||+||..+...+
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~~~ 64 (72)
T 2djb_A 13 TPYILCSICKGYLIDATTITECLHTFCKSCIVRHFYYSNRCPKCNIVVHQTQ 64 (72)
T ss_dssp CGGGSCTTTSSCCSSCEECSSSCCEECHHHHHHHHHHCSSCTTTCCCCCSSC
T ss_pred CCCCCCCCCChHHHCcCEECCCCCHHHHHHHHHHHHcCCcCCCcCcccCccc
Confidence 4467899999999999987 99999999999999998999999999986543
No 7
>2ea6_A Ring finger protein 4; RNF4, RES4-26, ring domain, zinc- binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.28 E-value=1.6e-12 Score=100.88 Aligned_cols=50 Identities=34% Similarity=0.760 Sum_probs=44.6
Q ss_pred cCCCCcccccccccccC-------eEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 286 DASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~-------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...+..|+||++.+.++ +.++|||.||..|+.+|+..+.+||+||.++..
T Consensus 12 ~~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 68 (69)
T 2ea6_A 12 PSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINH 68 (69)
T ss_dssp TTCCCCCTTTCCCHHHHTTTTCCEEECSSSCEEEHHHHHHHHHHCSSCTTTCCCCCC
T ss_pred CCCCCCCcccCccccccccccCCeEeCCCCChhcHHHHHHHHHcCCCCCCCCCccCc
Confidence 35577999999999887 788999999999999999999999999998753
No 8
>2l0b_A E3 ubiquitin-protein ligase praja-1; zinc finger, NESG, structural genomics, PSI-2, protein struc initiative; NMR {Homo sapiens}
Probab=99.27 E-value=1.6e-12 Score=107.11 Aligned_cols=49 Identities=39% Similarity=0.941 Sum_probs=43.9
Q ss_pred CCCCccccccccccc---CeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTT---AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~---~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.. .+.+||||.||..||.+|+..+.+||+||+.+.+
T Consensus 38 ~~~~~C~IC~~~~~~~~~~~~l~C~H~Fh~~Ci~~wl~~~~~CP~Cr~~~~~ 89 (91)
T 2l0b_A 38 GQEMCCPICCSEYVKGDVATELPCHHYFHKPCVSIWLQKSGTCPVCRCMFPP 89 (91)
T ss_dssp SSCSEETTTTEECCTTCEEEEETTTEEEEHHHHHHHHTTTCBCTTTCCBSSC
T ss_pred CCCCCCcccChhhcCCCcEEecCCCChHHHHHHHHHHHcCCcCcCcCccCCC
Confidence 456789999999987 5678999999999999999999999999998864
No 9
>2d8t_A Dactylidin, ring finger protein 146; RNF146, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=1.8e-12 Score=101.55 Aligned_cols=49 Identities=22% Similarity=0.485 Sum_probs=45.4
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.+++.++|||.||..|+.+|+..+.+||+||..+..
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 61 (71)
T 2d8t_A 13 LTVPECAICLQTCVHPVSLPCKHVFCYLCVKGASWLGKRCALCRQEIPE 61 (71)
T ss_dssp SSCCBCSSSSSBCSSEEEETTTEEEEHHHHHHCTTCSSBCSSSCCBCCH
T ss_pred CCCCCCccCCcccCCCEEccCCCHHHHHHHHHHHHCCCcCcCcCchhCH
Confidence 4567899999999999999999999999999999999999999999853
No 10
>2ecl_A Ring-box protein 2; RNF7, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.27 E-value=2.8e-12 Score=103.30 Aligned_cols=49 Identities=31% Similarity=0.725 Sum_probs=41.7
Q ss_pred CCCCccccccccccc--------------CeEec-cCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTT--------------AKKLI-CGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~--------------~~~l~-C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.+++.|+||++.+.+ ...++ |||.||..||++|+.++.+||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~~C~iC~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~CR~~~~~ 76 (81)
T 2ecl_A 13 VECDTCAICRVQVMDACLRCQAENKQEDCVVVWGECNHSFHNCCMSLWVKQNNRCPLCQQDWVV 76 (81)
T ss_dssp CCCSCBTTTTBCTTSCCTTHHHHTCTTTCCEEEETTSCEEEHHHHHHHTTTCCBCTTTCCBCCE
T ss_pred CCCCCCcccChhhhccCcccccccCCCceEEEeCCCCCccChHHHHHHHHhCCCCCCcCCCcch
Confidence 356789999999965 34555 99999999999999999999999998753
No 11
>3ng2_A RNF4, snurf, ring finger protein 4; ring domain, E3 ligase, ubiquitylation, sumoylation, zinc-FI metal binding protein; 1.80A {Rattus norvegicus}
Probab=99.27 E-value=1.7e-12 Score=101.42 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=45.0
Q ss_pred CCCCcccccccccccC-------eEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
.++..|+||++.+.++ ..++|||.||..|+.+|+..+.+||+||.++...
T Consensus 8 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 64 (71)
T 3ng2_A 8 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 64 (71)
T ss_dssp TTCCBCTTTCCBHHHHHTTTCCEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCCC
T ss_pred CCCCCCcccChhhhccccccCCeEeCCCCChHhHHHHHHHHHcCCCCCCCCCccChh
Confidence 4567899999999887 7889999999999999999999999999998644
No 12
>2ecm_A Ring finger and CHY zinc finger domain- containing protein 1; RCHY1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2jrj_A
Probab=99.26 E-value=2.6e-12 Score=95.19 Aligned_cols=47 Identities=38% Similarity=0.782 Sum_probs=42.0
Q ss_pred CCCccccccccccc----CeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~----~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
.+..|+||++.+.+ +..++|||.||..|+.+|+..+.+||+||+++.
T Consensus 4 ~~~~C~IC~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 54 (55)
T 2ecm_A 4 GSSGCPICLEDIHTSRVVAHVLPCGHLLHRTCYEEMLKEGYRCPLCSGPSS 54 (55)
T ss_dssp CCCSCTTTCCCCCTTTSCEEECTTSCEEETTHHHHHHHHTCCCTTSCCSSC
T ss_pred CCCcCcccChhhcCCCcCeEecCCCCcccHHHHHHHHHcCCcCCCCCCcCC
Confidence 46789999999865 567899999999999999999999999999874
No 13
>1chc_A Equine herpes virus-1 ring domain; viral protein; NMR {Equid herpesvirus 1} SCOP: g.44.1.1
Probab=99.23 E-value=6.1e-12 Score=97.45 Aligned_cols=49 Identities=31% Similarity=0.720 Sum_probs=44.0
Q ss_pred CCCCcccccccccccC-eEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~-~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
+.+..|+||++.+.++ +.++|||.||..|+.+|+.++.+||+||.++..
T Consensus 3 ~~~~~C~IC~~~~~~~~~~~~C~H~fc~~Ci~~~~~~~~~CP~Cr~~~~~ 52 (68)
T 1chc_A 3 TVAERCPICLEDPSNYSMALPCLHAFCYVCITRWIRQNPTCPLCKVPVES 52 (68)
T ss_dssp CCCCCCSSCCSCCCSCEEETTTTEEESTTHHHHHHHHSCSTTTTCCCCCC
T ss_pred CCCCCCeeCCccccCCcEecCCCCeeHHHHHHHHHhCcCcCcCCChhhHh
Confidence 3467899999999986 788999999999999999999999999998853
No 14
>2xeu_A Ring finger protein 4; transcription, zinc-finger, metal-binding; HET: SUC; 1.50A {Homo sapiens}
Probab=99.23 E-value=3.1e-12 Score=97.63 Aligned_cols=49 Identities=35% Similarity=0.753 Sum_probs=43.9
Q ss_pred CCCcccccccccccC-------eEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 288 SDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~-------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
++..|+||++.+.++ ..++|||.||..|+.+|+.++.+||+||+++...
T Consensus 2 ~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 57 (64)
T 2xeu_A 2 AMVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 57 (64)
T ss_dssp CCCBCTTTCCBHHHHHHTTCCEEEETTSCEEEHHHHHHHHHHCSBCTTTCCBCTTT
T ss_pred CCCCCCccChhhhCccccCCCEEeCCCCCchhHHHHHHHHHcCCCCCCCCccCCcc
Confidence 356899999999876 6889999999999999999999999999998643
No 15
>2yur_A Retinoblastoma-binding protein 6; P53-associated cellular protein of testis, proliferation potential-related protein, protein P2P-R; NMR {Homo sapiens}
Probab=99.22 E-value=1.1e-11 Score=97.83 Aligned_cols=49 Identities=37% Similarity=0.787 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCeEec-cCcccChhhHHHHHhcC--CCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ--HTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl~~~--~~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.+|+.++ |||.||..||.+|+..+ ..||+||+++..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~~ 64 (74)
T 2yur_A 13 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDVS 64 (74)
T ss_dssp CGGGSCSSSCCCCTTCEECSSSCCEECTTHHHHHHHHSSSSCCSSSCCSSCC
T ss_pred CCCCCCcCCChHHhCCeEcCCCCCHHHHHHHHHHHHhcCCCcCCCCCCcCCC
Confidence 45678999999999999999 99999999999999765 689999997654
No 16
>1v87_A Deltex protein 2; ring-H2 domain, zinc-binding domain, notch signaling, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.44.1.1
Probab=99.22 E-value=1.1e-11 Score=106.17 Aligned_cols=49 Identities=31% Similarity=0.772 Sum_probs=41.2
Q ss_pred CCCcccccccccccCe------------------EeccCcccChhhHHHHH-----hcCCCCCCCCCccCCC
Q 010385 288 SDSTCIICREEMTTAK------------------KLICGHLFHVHCLRSWL-----ERQHTCPTCRALVVPP 336 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~------------------~l~C~H~fh~~Cl~~wl-----~~~~~CP~Cr~~~~~~ 336 (512)
.+..|+||++.+..+. .++|||.||..||.+|+ ..+.+||+||+.+...
T Consensus 24 ~~~~C~ICl~~~~~~~~~~~~~~~~~~~~~~~~~~~~C~H~Fh~~Ci~~wl~~~~~~~~~~CP~CR~~~~~~ 95 (114)
T 1v87_A 24 PEEDCIICMEKLAVASGYSDMTDSKALGPMVVGRLTKCSHAFHLLCLLAMYCNGNKDGSLQCPSCKTIYGEK 95 (114)
T ss_dssp CSCEETTTTEETTSCCSTTTTCCCSSSCSSCCEEESSSCCEECHHHHHHHHHHTCCSSCCBCTTTCCBSSSC
T ss_pred CCCcCccCChhhcCcccccccccccccCcccceecCCCCCcccHHHHHHHHHcccCCCCCcCCCCCCccCCC
Confidence 3568999999997653 67999999999999999 4567899999988644
No 17
>2ecy_A TNF receptor-associated factor 3; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.21 E-value=9.1e-12 Score=96.01 Aligned_cols=50 Identities=24% Similarity=0.595 Sum_probs=44.4
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHh-cCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~~~~ 336 (512)
.++..|+||++.+.+++.++|||.||..|+.+|+. .+..||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 63 (66)
T 2ecy_A 13 EDKYKCEKCHLVLCSPKQTECGHRFCESCMAALLSSSSPKCTACQESIVKD 63 (66)
T ss_dssp CCCEECTTTCCEESSCCCCSSSCCCCHHHHHHHHTTSSCCCTTTCCCCCTT
T ss_pred CcCCCCCCCChHhcCeeECCCCCHHHHHHHHHHHHhCcCCCCCCCcCCChh
Confidence 45678999999999999999999999999999994 567899999998643
No 18
>2ysl_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.20 E-value=1.1e-11 Score=97.29 Aligned_cols=50 Identities=26% Similarity=0.611 Sum_probs=44.5
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHh---cCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE---RQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~---~~~~CP~Cr~~~~~~ 336 (512)
..+..|+||++.+.+++.++|||.||..|+.+|+. ....||+||.++...
T Consensus 18 ~~~~~C~IC~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 70 (73)
T 2ysl_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLCKTSVRKN 70 (73)
T ss_dssp CCCCBCTTTCSBCSSEEECTTCCEEEHHHHHHHCSSSCSCCCCSSSCCCCCCC
T ss_pred ccCCEeccCCcccCCeEEcCCCChhhHHHHHHHHHcCCCCCCCCCCCCcCCcc
Confidence 45679999999999999999999999999999996 456899999998643
No 19
>2csy_A Zinc finger protein 183-like 1; ring finger protein 161, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.19 E-value=8e-12 Score=100.41 Aligned_cols=48 Identities=21% Similarity=0.458 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
.....|+||++.+.+|+.++|||.||..|+.+|+.....||+||..+.
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~ 60 (81)
T 2csy_A 13 EIPFRCFICRQAFQNPVVTKCRHYFCESCALEHFRATPRCYICDQPTG 60 (81)
T ss_dssp CCCSBCSSSCSBCCSEEECTTSCEEEHHHHHHHHHHCSBCSSSCCBCC
T ss_pred CCCCCCcCCCchhcCeeEccCCCHhHHHHHHHHHHCCCcCCCcCcccc
Confidence 456789999999999999999999999999999999999999999885
No 20
>3dpl_R Ring-box protein 1; ubiquitin, NEDD8, cullin, HOST-virus interaction, receptor, UBL conjugation, UBL conjugation pathway, acetylation, cytoplasm; 2.60A {Homo sapiens} SCOP: g.44.1.1 PDB: 3dqv_R 3rtr_B 4f52_B 1u6g_B 2hye_D* 4a0c_D 4a0l_F* 1ldj_B 1ldk_C 2lgv_A
Probab=99.18 E-value=9.6e-12 Score=105.18 Aligned_cols=48 Identities=29% Similarity=0.713 Sum_probs=42.1
Q ss_pred CCCCcccccccccccC------------------eEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTA------------------KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~------------------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
..++.|+||++.+..+ ..++|+|.||..||.+|+..+.+||+||+++.
T Consensus 35 ~~~d~CaIC~~~~~~~c~~C~~~~~~~~~~~~~~~~~~C~H~FH~~Ci~~Wl~~~~~CP~Cr~~~~ 100 (106)
T 3dpl_R 35 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 100 (106)
T ss_dssp SCSCCCSSSCSCTTSCCTTHHHHTTCC---CCCEEEETTSCEEEHHHHHHHHTTCSBCSSSCSBCC
T ss_pred CCCCCCccCChhHhCcCchhhccccccCCccceEeecccCcEECHHHHHHHHHcCCcCcCCCCcce
Confidence 3578999999998755 34799999999999999999999999999863
No 21
>2ecn_A Ring finger protein 141; RNF141, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.17 E-value=6.8e-12 Score=97.84 Aligned_cols=49 Identities=29% Similarity=0.782 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
..+..|+||++.+.+ +.++|||.||..|+.+|+.++.+||+||+++...
T Consensus 13 ~~~~~C~IC~~~~~~-~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (70)
T 2ecn_A 13 TDEEECCICMDGRAD-LILPCAHSFCQKCIDKWSDRHRNCPICRLQMTGA 61 (70)
T ss_dssp CCCCCCSSSCCSCCS-EEETTTEEECHHHHHHSSCCCSSCHHHHHCTTCC
T ss_pred CCCCCCeeCCcCccC-cccCCCCcccHHHHHHHHHCcCcCCCcCCcccCC
Confidence 346789999999999 8999999999999999999999999999998644
No 22
>4ayc_A E3 ubiquitin-protein ligase RNF8; DNA damage, K63 chains; HET: CPQ; 1.90A {Homo sapiens} PDB: 4epo_C
Probab=99.17 E-value=6e-12 Score=111.83 Aligned_cols=46 Identities=37% Similarity=0.885 Sum_probs=43.6
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
+..|+||++.+.+|+.+||||.||..||..|+..+.+||+||.++.
T Consensus 53 ~~~C~iC~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~ 98 (138)
T 4ayc_A 53 ELQCIICSEYFIEAVTLNCAHSFCSYCINEWMKRKIECPICRKDIK 98 (138)
T ss_dssp HSBCTTTCSBCSSEEEETTSCEEEHHHHHHHTTTCSBCTTTCCBCC
T ss_pred cCCCcccCcccCCceECCCCCCccHHHHHHHHHcCCcCCCCCCcCC
Confidence 5689999999999999999999999999999999999999999885
No 23
>1t1h_A Gspef-atpub14, armadillo repeat containing protein; ubiquitin ligase, E3 ligase, U-BOX,; NMR {Arabidopsis thaliana} SCOP: g.44.1.2
Probab=99.15 E-value=1.8e-11 Score=97.44 Aligned_cols=49 Identities=20% Similarity=0.461 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhc-CCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~ 335 (512)
.++..|+||++.+.+|+.++|||.||..||.+|+.. +.+||.||.++..
T Consensus 6 ~~~~~C~IC~~~~~~Pv~~~CgH~fc~~Ci~~~~~~~~~~CP~C~~~~~~ 55 (78)
T 1t1h_A 6 PEYFRCPISLELMKDPVIVSTGQTYERSSIQKWLDAGHKTCPKSQETLLH 55 (78)
T ss_dssp SSSSSCTTTSCCCSSEEEETTTEEEEHHHHHHHHTTTCCBCTTTCCBCSS
T ss_pred cccCCCCCccccccCCEEcCCCCeecHHHHHHHHHHCcCCCCCCcCCCCh
Confidence 457799999999999999999999999999999987 7889999998854
No 24
>2ct2_A Tripartite motif protein 32; zinc-finger protein HT2A, TAT- interacting protein, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.14 E-value=2.5e-11 Score=98.75 Aligned_cols=50 Identities=32% Similarity=0.621 Sum_probs=44.4
Q ss_pred CCCCccccccccccc----CeEeccCcccChhhHHHHHhcC---CCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQ---HTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~----~~~l~C~H~fh~~Cl~~wl~~~---~~CP~Cr~~~~~~ 336 (512)
.++..|+||++.+.+ ++.++|||.||..|+.+|+..+ ..||+||..+...
T Consensus 13 ~~~~~C~IC~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~~ 69 (88)
T 2ct2_A 13 REVLECPICMESFTEEQLRPKLLHCGHTICRQCLEKLLASSINGVRCPFCSKITRIT 69 (88)
T ss_dssp CSCCBCTTTCCBCCTTSSCEEECSSSCEEEHHHHHHHHHHCSSCBCCTTTCCCBCCS
T ss_pred cCCCCCccCCccccccCCCeEECCCCChhhHHHHHHHHHcCCCCcCCCCCCCcccch
Confidence 456789999999998 8899999999999999999875 7899999988643
No 25
>2ysj_A Tripartite motif-containing protein 31; ring-type zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=4.5e-11 Score=91.15 Aligned_cols=43 Identities=28% Similarity=0.702 Sum_probs=39.3
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHh---cCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE---RQHTCPTC 329 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~---~~~~CP~C 329 (512)
..+..|+||++.+.+|+.++|||.||..||.+|++ ....||+|
T Consensus 18 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 63 (63)
T 2ysj_A 18 QEEVICPICLDILQKPVTIDCGHNFCLKCITQIGETSCGFFKCPLC 63 (63)
T ss_dssp CCCCBCTTTCSBCSSCEECTTSSEECHHHHHHHHHHCSSCCCCSCC
T ss_pred ccCCCCCcCCchhCCeEEeCCCCcchHHHHHHHHHcCCCCCcCcCC
Confidence 45789999999999999999999999999999997 45689998
No 26
>2ecv_A Tripartite motif-containing protein 5; metal binding protein, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.13 E-value=6.3e-11 Score=95.51 Aligned_cols=49 Identities=37% Similarity=0.758 Sum_probs=44.8
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhc------CCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER------QHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~------~~~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecv_A 17 KEEVTCPICLELLTQPLSLDCGHSFCQACLTANHKKSMLDKGESSCPVCRISYQP 71 (85)
T ss_dssp CCCCCCTTTCSCCSSCBCCSSSCCBCTTHHHHHHHHHHHTTSCCCCTTTCCSSCS
T ss_pred cCCCCCCCCCcccCCceeCCCCCHHHHHHHHHHHHHhhcCCCCCcCCCCCCccCH
Confidence 456799999999999999999999999999999977 7789999999865
No 27
>2ecw_A Tripartite motif-containing protein 30; metal binding protein, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=99.12 E-value=5.2e-11 Score=96.02 Aligned_cols=49 Identities=29% Similarity=0.552 Sum_probs=44.6
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhc------CCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER------QHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~------~~~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.+++.++|||.||..|+..|+.. ...||.||..+..
T Consensus 17 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~~~~CP~Cr~~~~~ 71 (85)
T 2ecw_A 17 KEEVTCPICLELLKEPVSADCNHSFCRACITLNYESNRNTDGKGNCPVCRVPYPF 71 (85)
T ss_dssp CTTTSCTTTCSCCSSCEECTTSCCBCHHHHHHHHHHSBCTTSCBCCTTTCCCCCT
T ss_pred ccCCCCcCCChhhCcceeCCCCCHHHHHHHHHHHHhccCCCCCCCCCCCCCcCCH
Confidence 456799999999999999999999999999999987 6789999999864
No 28
>2egp_A Tripartite motif-containing protein 34; ZF-C3HC4 domain, tripartite motif protein 34, interferon- responsive finger protein 1; NMR {Homo sapiens}
Probab=99.12 E-value=1.9e-11 Score=97.50 Aligned_cols=49 Identities=29% Similarity=0.564 Sum_probs=44.3
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhc-------CCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-------QHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-------~~~CP~Cr~~~~~ 335 (512)
.++..|+||++.+.+|+.++|||.||..|+.+|+.. ...||.||..+..
T Consensus 10 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~~~~~~~~~~~~~~CP~Cr~~~~~ 65 (79)
T 2egp_A 10 QEEVTCPICLELLTEPLSLDCGHSLCRACITVSNKEAVTSMGGKSSCPVCGISYSF 65 (79)
T ss_dssp CCCCEETTTTEECSSCCCCSSSCCCCHHHHSCCCCCCSSSCCCCCCCSSSCCCCCS
T ss_pred ccCCCCcCCCcccCCeeECCCCCHHHHHHHHHHHHhcccCCCCCCcCCCCCCcCCH
Confidence 456789999999999999999999999999999976 5689999999864
No 29
>3ztg_A E3 ubiquitin-protein ligase RBBP6; PACT, U-BOX, mRNA processing, mRNA splicing; NMR {Homo sapiens}
Probab=99.10 E-value=6.1e-11 Score=97.54 Aligned_cols=48 Identities=38% Similarity=0.811 Sum_probs=43.0
Q ss_pred CCCCcccccccccccCeEec-cCcccChhhHHHHHhc--CCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLER--QHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl~~--~~~CP~Cr~~~~ 334 (512)
..+..|+||++.+.+|+.++ |||.||..||..|+.. ...||.||.++.
T Consensus 11 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~~CP~Cr~~~~ 61 (92)
T 3ztg_A 11 PDELLCLICKDIMTDAVVIPCCGNSYCDECIRTALLESDEHTCPTCHQNDV 61 (92)
T ss_dssp CTTTEETTTTEECSSCEECTTTCCEECHHHHHHHHHHCTTCCCTTTCCSSC
T ss_pred CcCCCCCCCChhhcCceECCCCCCHHHHHHHHHHHHhcCCCcCcCCCCcCC
Confidence 45789999999999999999 9999999999999965 358999999863
No 30
>2ecj_A Tripartite motif-containing protein 39; TRIM39, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.07 E-value=7.9e-11 Score=87.99 Aligned_cols=43 Identities=33% Similarity=0.914 Sum_probs=38.6
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHH---hcCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWL---ERQHTCPTC 329 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl---~~~~~CP~C 329 (512)
..+..|+||++.+.+++.++|||.||..||.+|+ ..+.+||+|
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~C 58 (58)
T 2ecj_A 13 QVEASCSVCLEYLKEPVIIECGHNFCKACITRWWEDLERDFPCPVC 58 (58)
T ss_dssp CCCCBCSSSCCBCSSCCCCSSCCCCCHHHHHHHTTSSCCSCCCSCC
T ss_pred ccCCCCccCCcccCccEeCCCCCccCHHHHHHHHHhcCCCCCCCCC
Confidence 4567999999999999999999999999999995 456789998
No 31
>3lrq_A E3 ubiquitin-protein ligase TRIM37; structural genomics, PSI-2, protein structure initiative, northeast structural genomics consortium, NESG; HET: MSE; 2.29A {Homo sapiens}
Probab=99.06 E-value=3.3e-11 Score=100.92 Aligned_cols=48 Identities=35% Similarity=0.785 Sum_probs=43.7
Q ss_pred CCCcccccccccccCeE-eccCcccChhhHHHHHhcC-CCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKK-LICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~-l~C~H~fh~~Cl~~wl~~~-~~CP~Cr~~~~~ 335 (512)
++..|+||++.+.+|+. ++|||.||..||.+|+..+ ..||+||.++..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (100)
T 3lrq_A 21 EVFRCFICMEKLRDARLCPHCSKLCCFSCIRRWLTEQRAQCPHCRAPLQL 70 (100)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCccCCccccCccccCCCCChhhHHHHHHHHHHCcCCCCCCCCcCCH
Confidence 35689999999999999 9999999999999999887 699999999853
No 32
>4a0k_B E3 ubiquitin-protein ligase RBX1; ligase-DNA-binding protein-DNA complex, DNA-binding protein- complex; HET: DNA 3DR; 5.93A {Mus musculus}
Probab=99.05 E-value=2.2e-11 Score=104.49 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=1.5
Q ss_pred CCCCcccccccccccCe------------------EeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAK------------------KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~------------------~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
..++.|+||++.+.++. .++|+|.||..||.+|+..+.+||+||+++.
T Consensus 46 ~~~d~CaICl~~~~~~c~~C~~~~~~~~~~~~~v~~~~C~H~FH~~CI~~Wl~~~~~CP~Cr~~~~ 111 (117)
T 4a0k_B 46 IVVDNCAICRNHIMDLCIECQANQASATSEECTVAWGVCNHAFHFHCISRWLKTRQVCPLDNREWE 111 (117)
T ss_dssp CCC---------------------------------------------------------------
T ss_pred CCCCcCeECChhhcCcChhhhcccccccccccccccCCcCceEcHHHHHHHHHcCCcCCCCCCeee
Confidence 35689999999997631 2589999999999999999999999999864
No 33
>2ckl_A Polycomb group ring finger protein 4; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_B 2h0d_A
Probab=99.04 E-value=7.8e-11 Score=100.00 Aligned_cols=49 Identities=27% Similarity=0.627 Sum_probs=44.9
Q ss_pred CCCCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.+|+.+ +|||.||..|+..|+..+..||.||..+..
T Consensus 13 ~~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 62 (108)
T 2ckl_A 13 NPHLMCVLCGGYFIDATTIIECLHSFCKTCIVRYLETSKYCPICDVQVHK 62 (108)
T ss_dssp GGGTBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHTSCSBCTTTCCBSCS
T ss_pred CCcCCCccCChHHhCcCEeCCCCChhhHHHHHHHHHhCCcCcCCCccccc
Confidence 3467899999999999998 999999999999999999999999998853
No 34
>3fl2_A E3 ubiquitin-protein ligase UHRF1; cell cycle, DNA damage, DNA repair, ring finger domain, metal binding, DNA replication; 1.75A {Homo sapiens}
Probab=99.04 E-value=1.1e-10 Score=101.65 Aligned_cols=48 Identities=27% Similarity=0.562 Sum_probs=43.3
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcC-CCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~-~~CP~Cr~~~~~ 335 (512)
.+..|+||++.+.+|+.++|||.||..||..|+..+ ..||.||.++..
T Consensus 51 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 99 (124)
T 3fl2_A 51 ETFQCICCQELVFRPITTVCQHNVCKDCLDRSFRAQVFSCPACRYDLGR 99 (124)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCT
T ss_pred cCCCCCcCChHHcCcEEeeCCCcccHHHHHHHHhHCcCCCCCCCccCCC
Confidence 457899999999999999999999999999999754 489999999864
No 35
>2y43_A E3 ubiquitin-protein ligase RAD18; DNA repair, metal-binding, translesion synthesis, UB conjugation pathway; 1.80A {Homo sapiens}
Probab=99.03 E-value=8.3e-11 Score=98.15 Aligned_cols=48 Identities=31% Similarity=0.628 Sum_probs=44.2
Q ss_pred CCCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.+..|+||++.+.+|+.+ +|||.||..|+.+|+..+.+||.||..+..
T Consensus 21 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~CP~Cr~~~~~ 69 (99)
T 2y43_A 21 DLLRCGICFEYFNIAMIIPQCSHNYCSLCIRKFLSYKTQCPTCCVTVTE 69 (99)
T ss_dssp HHTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred CCCCcccCChhhCCcCEECCCCCHhhHHHHHHHHHCCCCCCCCCCcCCh
Confidence 457899999999999988 899999999999999999999999998853
No 36
>2d8s_A Cellular modulator of immune recognition; C-MIR, march8, ring domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=99.02 E-value=1.9e-10 Score=92.05 Aligned_cols=50 Identities=26% Similarity=0.645 Sum_probs=41.6
Q ss_pred CCCCcccccccccc--cCeEeccC-----cccChhhHHHHHhcC--CCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMT--TAKKLICG-----HLFHVHCLRSWLERQ--HTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~--~~~~l~C~-----H~fh~~Cl~~wl~~~--~~CP~Cr~~~~~~ 336 (512)
..+..|.||+++++ ++..+||+ |.||..||++|+..+ .+||+||.++...
T Consensus 13 ~~~~~C~IC~~~~~~~~~l~~pC~C~Gs~h~fH~~Cl~~Wl~~~~~~~CplCr~~~~~~ 71 (80)
T 2d8s_A 13 SSQDICRICHCEGDDESPLITPCHCTGSLHFVHQACLQQWIKSSDTRCCELCKYEFIME 71 (80)
T ss_dssp TTSCCCSSSCCCCCSSSCEECSSSCCSSSCCEETTHHHHHHHHHCCSBCSSSCCBCCCC
T ss_pred CCCCCCeEcCccccCCCeeEeccccCCcCCeeCHHHHHHHHhhCCCCCCCCCCCeeecC
Confidence 45678999999885 45677996 999999999999765 5899999998644
No 37
>3l11_A E3 ubiquitin-protein ligase RNF168; E3 ligase, ring domain, DNA damage, chromatin regulator, CHR protein, DNA repair, metal-binding, nucleus; 2.12A {Homo sapiens}
Probab=99.00 E-value=4.9e-11 Score=102.38 Aligned_cols=48 Identities=33% Similarity=0.661 Sum_probs=43.7
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhc-CCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~ 334 (512)
.++..|+||++.+.+|+.++|||.||..||.+|+.. +..||.||..+.
T Consensus 13 ~~~~~C~iC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~ 61 (115)
T 3l11_A 13 LSECQCGICMEILVEPVTLPCNHTLCKPCFQSTVEKASLCCPFCRRRVS 61 (115)
T ss_dssp HHHHBCTTTCSBCSSCEECTTSCEECHHHHCCCCCTTTSBCTTTCCBCH
T ss_pred CCCCCCccCCcccCceeEcCCCCHHhHHHHHHHHhHCcCCCCCCCcccC
Confidence 446789999999999999999999999999999976 678999999885
No 38
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.99 E-value=1.5e-10 Score=101.34 Aligned_cols=50 Identities=34% Similarity=0.761 Sum_probs=45.2
Q ss_pred CCCCcccccccccccC-------eEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~-------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
.++..|+||++.+.++ +.++|||.||..||.+|+..+.+||+||+.+...
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 61 (133)
T 4ap4_A 5 SGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 61 (133)
T ss_dssp CCSCBCTTTCCBHHHHHHTTCCEEEETTCCEEEHHHHHHHHTTCSBCTTTCCBCTTT
T ss_pred CCCCCCcccChhhhCccccccCeEecCCCChhhHHHHHHHHHhCCCCCCCCCcCccc
Confidence 3567899999999988 8899999999999999999999999999998643
No 39
>2kr4_A Ubiquitin conjugation factor E4 B; U-BOX, UFD2, ring, E3 ligase, UBL conjugation pathway; NMR {Mus musculus}
Probab=98.99 E-value=2.3e-10 Score=92.80 Aligned_cols=49 Identities=16% Similarity=0.148 Sum_probs=45.2
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.....|+||++.|.+|+.++|||.||..||.+|+..+.+||.||.++..
T Consensus 12 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 60 (85)
T 2kr4_A 12 PDEFRDPLMDTLMTDPVRLPSGTVMDRSIILRHLLNSPTDPFNRQMLTE 60 (85)
T ss_dssp CTTTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred chheECcccCchhcCCeECCCCCEECHHHHHHHHhcCCCCCCCcCCCCh
Confidence 3578999999999999999999999999999999988999999998753
No 40
>1jm7_A BRCA1, breast cancer type 1 susceptibility protein; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.9e-10 Score=96.79 Aligned_cols=47 Identities=26% Similarity=0.634 Sum_probs=42.2
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCC---CCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH---TCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~---~CP~Cr~~~~~ 335 (512)
...|+||++.+.+|+.++|||.||..|+..|+..+. .||.||..+..
T Consensus 21 ~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~~~CP~Cr~~~~~ 70 (112)
T 1jm7_A 21 ILECPICLELIKEPVSTKCDHIFCKFCMLKLLNQKKGPSQCPLCKNDITK 70 (112)
T ss_dssp HTSCSSSCCCCSSCCBCTTSCCCCSHHHHHHHHSSSSSCCCTTTSCCCCT
T ss_pred CCCCcccChhhcCeEECCCCCHHHHHHHHHHHHhCCCCCCCcCCCCcCCH
Confidence 458999999999999999999999999999998654 89999998753
No 41
>1g25_A CDK-activating kinase assembly factor MAT1; ring finger (C3HC4), metal binding protein; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.98 E-value=2.3e-10 Score=87.79 Aligned_cols=48 Identities=23% Similarity=0.606 Sum_probs=40.6
Q ss_pred CCccccccc-ccccCe----EeccCcccChhhHHHHHhc-CCCCCCCCCccCCC
Q 010385 289 DSTCIICRE-EMTTAK----KLICGHLFHVHCLRSWLER-QHTCPTCRALVVPP 336 (512)
Q Consensus 289 ~~~C~IC~~-~~~~~~----~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~~ 336 (512)
+..|+||++ .+.++. .++|||.||..|+.+|+.+ ...||.||+.+...
T Consensus 3 ~~~C~IC~~~~~~~~~~~~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 56 (65)
T 1g25_A 3 DQGCPRCKTTKYRNPSLKLMVNVCGHTLCESCVDLLFVRGAGNCPECGTPLRKS 56 (65)
T ss_dssp TTCCSTTTTHHHHCSSCCEEECTTCCCEEHHHHHHHHHTTSSSCTTTCCCCSSC
T ss_pred CCcCCcCCCCccCCCccCeecCCCCCHhHHHHHHHHHHcCCCcCCCCCCccccc
Confidence 568999999 788874 5799999999999999755 56799999998643
No 42
>1bor_A Transcription factor PML; proto-oncogene, nuclear bodies (PODS), leukemia, transcription regulation; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.97 E-value=1.8e-10 Score=85.77 Aligned_cols=49 Identities=27% Similarity=0.437 Sum_probs=42.3
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVPPEN 338 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~~~ 338 (512)
.++..|+||++.+.+|+.++|||.||..|+..| ...||+||+.+..+..
T Consensus 4 ~~~~~C~IC~~~~~~p~~l~CgH~fC~~Ci~~~---~~~CP~Cr~~~~~~~~ 52 (56)
T 1bor_A 4 FQFLRCQQCQAEAKCPKLLPCLHTLCSGCLEAS---GMQCPICQAPWPLGAD 52 (56)
T ss_dssp CCCSSCSSSCSSCBCCSCSTTSCCSBTTTCSSS---SSSCSSCCSSSSCCSS
T ss_pred ccCCCceEeCCccCCeEEcCCCCcccHHHHccC---CCCCCcCCcEeecCCc
Confidence 346789999999999999999999999999874 6689999999865443
No 43
>2kre_A Ubiquitin conjugation factor E4 B; U-box domain, E3 ubiquitin ligase, E4 polyubiquitin chain EL factor, phosphoprotein, UBL conjugation pathway; NMR {Homo sapiens} PDB: 3l1x_A 3l1z_B
Probab=98.96 E-value=2.2e-10 Score=95.81 Aligned_cols=49 Identities=16% Similarity=0.127 Sum_probs=45.4
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
.....|+||++.|.+|+.++|||.||..||.+|+..+.+||.||.++..
T Consensus 27 p~~~~CpI~~~~m~dPV~~~cGhtf~r~~I~~~l~~~~~cP~~~~~l~~ 75 (100)
T 2kre_A 27 PDEFRDPLMDTLMTDPVRLPSGTIMDRSIILRHLLNSPTDPFNRQTLTE 75 (100)
T ss_dssp STTTBCTTTCSBCSSEEEETTTEEEEHHHHHHHTTSCSBCSSSCCBCCT
T ss_pred cHhhCCcCccCcccCCeECCCCCEEchHHHHHHHHcCCCCCCCCCCCCh
Confidence 3568999999999999999999999999999999988999999998864
No 44
>1z6u_A NP95-like ring finger protein isoform B; structural genomics consortium, ligase, ubiquitin-protein ligase, cell cycle regulation, SGC; 2.10A {Homo sapiens}
Probab=98.94 E-value=3.7e-10 Score=101.60 Aligned_cols=49 Identities=24% Similarity=0.495 Sum_probs=44.1
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCC-CCCCCCCccCCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVPP 336 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~-~CP~Cr~~~~~~ 336 (512)
.+..|+||++.+.+|+.++|||.||..||..|+.... .||+||..+...
T Consensus 77 ~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~~ 126 (150)
T 1z6u_A 77 QSFMCVCCQELVYQPVTTECFHNVCKDCLQRSFKAQVFSCPACRHDLGQN 126 (150)
T ss_dssp HHTBCTTTSSBCSSEEECTTSCEEEHHHHHHHHHTTCCBCTTTCCBCCTT
T ss_pred cCCEeecCChhhcCCEEcCCCCchhHHHHHHHHHhCCCcCCCCCccCCCC
Confidence 4578999999999999999999999999999998754 899999998654
No 45
>1wgm_A Ubiquitin conjugation factor E4A; ubiquitinating enzyme, KIAA0126, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.2
Probab=98.94 E-value=4.4e-10 Score=93.64 Aligned_cols=49 Identities=14% Similarity=0.009 Sum_probs=45.5
Q ss_pred CCCCcccccccccccCeEeccC-cccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~-H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
..+..|+||++.|.+|+.++|| |.||..||.+|+..+.+||.||.++..
T Consensus 20 p~~~~CpI~~~~m~dPV~~~cG~htf~r~cI~~~l~~~~~cP~~~~~l~~ 69 (98)
T 1wgm_A 20 CDEFLDPIMSTLMCDPVVLPSSRVTVDRSTIARHLLSDQTDPFNRSPLTM 69 (98)
T ss_dssp CTTTBCTTTCSBCSSEEECTTTCCEEEHHHHHHHTTTSCBCTTTCSBCCT
T ss_pred cHhcCCcCccccccCCeECCCCCeEECHHHHHHHHHhCCCCCCCCCCCCh
Confidence 4578999999999999999999 999999999999988899999998864
No 46
>2ct0_A Non-SMC element 1 homolog; ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.93 E-value=1.2e-09 Score=85.86 Aligned_cols=50 Identities=20% Similarity=0.585 Sum_probs=42.6
Q ss_pred cCCCCcccccccccccCeEe-ccCcccChhhHHHHHhcC--CCCCCCCCccCC
Q 010385 286 DASDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQ--HTCPTCRALVVP 335 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~--~~CP~Cr~~~~~ 335 (512)
.+....|+||++.+...++- .|+|.||..||.+|++.+ .+||+||.++..
T Consensus 12 ~~~i~~C~IC~~~i~~g~~C~~C~h~fH~~Ci~kWl~~~~~~~CP~Cr~~w~~ 64 (74)
T 2ct0_A 12 PDAVKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 64 (74)
T ss_dssp SSSSCBCSSSCCBCSSSEECSSSCCEECHHHHHHHSTTCSSCCCTTTCSCCCS
T ss_pred cCCCCcCcchhhHcccCCccCCCCchhhHHHHHHHHHhcCCCCCCCCcCcCCC
Confidence 34567899999999876654 799999999999999876 889999998853
No 47
>1rmd_A RAG1; V(D)J recombination, antibody, MAD, ring finger, zinc binuclear cluster, zinc finger, DNA-binding protein; 2.10A {Mus musculus} SCOP: g.37.1.1 g.44.1.1
Probab=98.91 E-value=2e-10 Score=98.64 Aligned_cols=48 Identities=29% Similarity=0.670 Sum_probs=44.0
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhc-CCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~ 335 (512)
.+..|+||++.+.+|+.++|||.||..||.+|+.. +.+||+||.++..
T Consensus 22 ~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 70 (116)
T 1rmd_A 22 KSISCQICEHILADPVETSCKHLFCRICILRCLKVMGSYCPSCRYPCFP 70 (116)
T ss_dssp HHTBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred CCCCCCCCCcHhcCcEEcCCCCcccHHHHHHHHhHCcCcCCCCCCCCCH
Confidence 46789999999999999999999999999999987 7789999998864
No 48
>2ckl_B Ubiquitin ligase protein RING2; BMI1, RING1B, polycomb, E3-ligase, nuclear protein, chromosomal protein, transcription regulation; 2.0A {Mus musculus} PDB: 3rpg_C 2h0d_B
Probab=98.90 E-value=4.4e-10 Score=102.71 Aligned_cols=48 Identities=31% Similarity=0.674 Sum_probs=43.3
Q ss_pred CCCcccccccccccCeEe-ccCcccChhhHHHHHhc-CCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~ 335 (512)
.+..|+||++.+.+|+.+ +|||.||..|+..|+.. +..||+||..+..
T Consensus 53 ~~~~C~IC~~~~~~p~~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 102 (165)
T 2ckl_B 53 SELMCPICLDMLKNTMTTKECLHRFCADCIITALRSGNKECPTCRKKLVS 102 (165)
T ss_dssp HHHBCTTTSSBCSSEEEETTTCCEEEHHHHHHHHHTTCCBCTTTCCBCCS
T ss_pred CCCCCcccChHhhCcCEeCCCCChhHHHHHHHHHHhCcCCCCCCCCcCCC
Confidence 346899999999999988 99999999999999987 7789999999853
No 49
>3hct_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 3hcu_A 2eci_A 2jmd_A
Probab=98.90 E-value=4.2e-10 Score=97.05 Aligned_cols=49 Identities=24% Similarity=0.538 Sum_probs=44.1
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCC-CCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~-~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.+|+.++|||.||..||.+|+..+. +||+||.++..
T Consensus 16 ~~~~~C~IC~~~~~~p~~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (118)
T 3hct_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (118)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCcCChhhcCeEECCcCChhhHHHHHHHHhhCCCCCCCCCCCcCH
Confidence 45679999999999999999999999999999998755 99999998854
No 50
>2vje_A E3 ubiquitin-protein ligase MDM2; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_A* 2hdp_A
Probab=98.90 E-value=5.9e-10 Score=85.38 Aligned_cols=47 Identities=26% Similarity=0.615 Sum_probs=42.8
Q ss_pred CCCcccccccccccCeEe--ccCcc-cChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKL--ICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l--~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
++..|.||++...++..+ ||||. ||..|+.+|...+..||+||+++.
T Consensus 7 ~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 56 (64)
T 2vje_A 7 AIEPCVICQGRPKNGCIVHGKTGHLMACFTCAKKLKKRNKPCPVCRQPIQ 56 (64)
T ss_dssp GGSCCTTTSSSCSCEEEEETTEEEEEECHHHHHHHHHTTCCCTTTCCCCC
T ss_pred CcCCCCcCCCCCCCEEEECCCCCChhhHHHHHHHHHHcCCcCCCcCcchh
Confidence 456899999999999877 99999 899999999998899999999874
No 51
>2vje_B MDM4 protein; proto-oncogene, phosphorylation, alternative splicing, HOST-virus interaction, UBL conjugation pathway, zinc-finger, polymorphism; HET: FLC; 2.20A {Homo sapiens} PDB: 2vjf_B*
Probab=98.89 E-value=6.1e-10 Score=85.02 Aligned_cols=48 Identities=23% Similarity=0.549 Sum_probs=43.2
Q ss_pred CCCCcccccccccccCeEe--ccCcc-cChhhHHHHHhcCCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKL--ICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l--~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
+.+..|.||++...++..+ ||||. ||..|+.+|...+..||+||+++.
T Consensus 5 ~~~~~C~IC~~~~~~~~~~~~pCgH~~~C~~C~~~~~~~~~~CPiCR~~i~ 55 (63)
T 2vje_B 5 NLLKPCSLCEKRPRDGNIIHGRTGHLVTCFHCARRLKKAGASCPICKKEIQ 55 (63)
T ss_dssp GGGSBCTTTSSSBSCEEEEETTEEEEEECHHHHHHHHHTTCBCTTTCCBCC
T ss_pred CcCCCCcccCCcCCCeEEEecCCCCHhHHHHHHHHHHHhCCcCCCcCchhh
Confidence 4467899999999988877 99998 999999999988889999999884
No 52
>4ap4_A E3 ubiquitin ligase RNF4; ligase-signalling protein complex, chimera; 2.21A {Rattus norvegicus}
Probab=98.88 E-value=4.4e-10 Score=98.33 Aligned_cols=51 Identities=33% Similarity=0.746 Sum_probs=45.5
Q ss_pred cCCCCcccccccccccC-------eEeccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 286 DASDSTCIICREEMTTA-------KKLICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~-------~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
..++..|+||++.+.++ +.++|||.||..|+++|++.+++||+||.++...
T Consensus 69 ~~~~~~C~iC~~~~~~~~~~~~~~~~~~CgH~fc~~Ci~~~~~~~~~CP~Cr~~~~~~ 126 (133)
T 4ap4_A 69 GSGTVSCPICMDGYSEIVQNGRLIVSTECGHVFCSQCLRDSLKNANTCPTCRKKINHK 126 (133)
T ss_dssp SSSSCBCTTTCCBHHHHHHTTCCEEEETTSBEEEHHHHHHHHHHCSBCTTTCCBCCGG
T ss_pred CCCCCCCCCCCCccccccccCcceEeCCCCChhhHHHHHHHHHcCCCCCCCCCcCChh
Confidence 45678999999999876 7889999999999999999999999999998643
No 53
>2y1n_A E3 ubiquitin-protein ligase; ligase-transferase complex, ubiquitin ring E3 ligase; HET: PTR; 2.00A {Homo sapiens} PDB: 2y1m_A* 4a4c_A* 4a4b_A* 1fbv_A* 3vgo_A 4a49_A* 2k4d_A 2ldr_A*
Probab=98.84 E-value=1.2e-09 Score=111.80 Aligned_cols=47 Identities=38% Similarity=0.767 Sum_probs=43.5
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHh-cCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~~~ 335 (512)
...|+||++.+.+++.+||||.||..|+..|+. ...+||+||+++..
T Consensus 332 ~~~C~ICle~~~~pv~lpCGH~FC~~Ci~~wl~~~~~~CP~CR~~i~~ 379 (389)
T 2y1n_A 332 FQLCKICAENDKDVKIEPCGHLMCTSCLTSWQESEGQGCPFCRCEIKG 379 (389)
T ss_dssp SSBCTTTSSSBCCEEEETTCCEECHHHHHHHHHHTCSBCTTTCCBCCE
T ss_pred CCCCCccCcCCCCeEEeCCCChhhHHHHHHHHhcCCCCCCCCCCccCC
Confidence 368999999999999999999999999999998 68899999998864
No 54
>2c2l_A CHIP, carboxy terminus of HSP70-interacting protein; chaperone, E3 ligase, ubiquitinylation, TPR, heat-shock protein complex; 3.3A {Mus musculus} SCOP: a.118.8.1 g.44.1.2
Probab=98.83 E-value=3.1e-09 Score=104.79 Aligned_cols=49 Identities=18% Similarity=0.130 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhc-CCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~ 335 (512)
.....|+||++.|.+|+.+||||.||..||.+|+.. +.+||.||.++..
T Consensus 206 ~~~~~c~i~~~~~~dPv~~~~gh~f~~~~i~~~~~~~~~~cP~~~~~~~~ 255 (281)
T 2c2l_A 206 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFNPVTRSPLTQ 255 (281)
T ss_dssp CSTTBCTTTCSBCSSEEECSSCCEEETTHHHHHHHHTCSSCTTTCCCCCG
T ss_pred CcccCCcCcCCHhcCCeECCCCCEECHHHHHHHHHHCCCCCcCCCCCCch
Confidence 457899999999999999999999999999999976 4459999998853
No 55
>1e4u_A Transcriptional repressor NOT4; gene regulation, transcriptional control; NMR {Homo sapiens} SCOP: g.44.1.1 PDB: 1ur6_B
Probab=98.83 E-value=4.6e-09 Score=83.65 Aligned_cols=50 Identities=20% Similarity=0.454 Sum_probs=40.2
Q ss_pred CCCCccccccccccc--CeEec--cCcccChhhHHHHHh-cCCCCCCCCCccCCC
Q 010385 287 ASDSTCIICREEMTT--AKKLI--CGHLFHVHCLRSWLE-RQHTCPTCRALVVPP 336 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~--~~~l~--C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~~~~ 336 (512)
.++..|+||++.+.. +..+| |||.||..|+..++. ....||.||+++...
T Consensus 9 ~~~~~CpICle~~~~~d~~~~p~~CGH~fC~~Cl~~~~~~~~~~CP~CR~~~~~~ 63 (78)
T 1e4u_A 9 EDPVECPLCMEPLEIDDINFFPCTCGYQICRFCWHRIRTDENGLCPACRKPYPED 63 (78)
T ss_dssp CCCCBCTTTCCBCCTTTTTCCSSTTSCCCCHHHHHHHTTSSCSBCTTTCCBCSSC
T ss_pred ccCCcCCccCccCccccccccccCCCCCcCHHHHHHHHhcCCCCCCCCCCccCCC
Confidence 456789999999853 44555 999999999999874 467899999998653
No 56
>1jm7_B BARD1, BRCA1-associated ring domain protein 1; ring finger, zinc-binding protein, heterodimer, ubiquitin ligase, antitumor; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.82 E-value=1.5e-09 Score=93.42 Aligned_cols=45 Identities=22% Similarity=0.531 Sum_probs=41.5
Q ss_pred CCCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
.+..|+||++.+.+|+.+ +|||.||..||..|+. ..||.||..+.
T Consensus 21 ~~~~C~IC~~~~~~pv~~~~CgH~fC~~Ci~~~~~--~~CP~Cr~~~~ 66 (117)
T 1jm7_B 21 KLLRCSRCTNILREPVCLGGCEHIFCSNCVSDCIG--TGCPVCYTPAW 66 (117)
T ss_dssp HTTSCSSSCSCCSSCBCCCSSSCCBCTTTGGGGTT--TBCSSSCCBCS
T ss_pred hCCCCCCCChHhhCccEeCCCCCHHHHHHHHHHhc--CCCcCCCCcCc
Confidence 367899999999999999 9999999999999988 78999999874
No 57
>3knv_A TNF receptor-associated factor 2; cross-brace, alternative splicing, apoptosis, cytoplasm, metal-binding, UBL conjugation, zinc, zinc-finger; 1.90A {Homo sapiens}
Probab=98.78 E-value=9.5e-10 Score=97.88 Aligned_cols=49 Identities=24% Similarity=0.529 Sum_probs=43.9
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcCC-CCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQH-TCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~-~CP~Cr~~~~~ 335 (512)
..+..|+||++.+.+|+.++|||.||..||.+|+.... .||.||.++..
T Consensus 29 ~~~~~C~IC~~~~~~pv~~~CgH~FC~~Ci~~~~~~~~~~CP~Cr~~~~~ 78 (141)
T 3knv_A 29 EAKYLCSACRNVLRRPFQAQCGHRYCSFCLASILSSGPQNCAACVHEGIY 78 (141)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHGGGSCEECHHHHHTTCC
T ss_pred CcCcCCCCCChhhcCcEECCCCCccCHHHHHHHHhcCCCCCCCCCCcccc
Confidence 45679999999999999999999999999999998654 89999998743
No 58
>4ic3_A E3 ubiquitin-protein ligase XIAP; ring domain, zinc-finger, E3 ligase; 1.78A {Homo sapiens} PDB: 4ic2_A
Probab=98.76 E-value=1.5e-09 Score=85.65 Aligned_cols=43 Identities=26% Similarity=0.672 Sum_probs=39.6
Q ss_pred CCCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
++..|.||++.+.+++.+||||. ||..|+..| ..||+||+++.
T Consensus 23 ~~~~C~iC~~~~~~~~~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~ 66 (74)
T 4ic3_A 23 EEKLCKICMDRNIAIVFVPCGHLVTCKQCAEAV----DKCPMCYTVIT 66 (74)
T ss_dssp HHTBCTTTSSSBCCEEEETTCCBCCCHHHHTTC----SBCTTTCCBCS
T ss_pred cCCCCCCCCCCCCCEEEcCCCChhHHHHhhhcC----ccCCCcCcCcc
Confidence 35689999999999999999999 999999998 78999999885
No 59
>2yu4_A E3 SUMO-protein ligase NSE2; SP-ring domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.67 E-value=5.9e-09 Score=86.14 Aligned_cols=47 Identities=32% Similarity=0.616 Sum_probs=41.3
Q ss_pred CCCcccccccccccCeEec-cCcccChhhHHHHHhcC------CCCCC--CCCc-cC
Q 010385 288 SDSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ------HTCPT--CRAL-VV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl~~~------~~CP~--Cr~~-~~ 334 (512)
.+..|+||++.|.+|+.++ |||.||..||.+|+..+ .+||. |+.. +.
T Consensus 6 ~~~~CPI~~~~~~dPV~~~~cGh~f~r~cI~~~l~~~~~~~~~~~CP~tgc~~~~l~ 62 (94)
T 2yu4_A 6 SGFTCPITKEEMKKPVKNKVCGHTYEEDAIVRMIESRQKRKKKAYCPQIGCSHTDIR 62 (94)
T ss_dssp SCCBCTTTCSBCSSEEEESSSCCEEEHHHHHHHHHHHHTTTCCBCCCSTTCCCCCBC
T ss_pred cEeECcCcCchhcCCEEcCCCCCeecHHHHHHHHHHccCcCCCCCCCcCcCcccccC
Confidence 4678999999999999996 99999999999999753 48999 9866 54
No 60
>2ea5_A Cell growth regulator with ring finger domain protein 1; CGRRF1, ring domain, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.66 E-value=1.7e-08 Score=78.08 Aligned_cols=48 Identities=23% Similarity=0.615 Sum_probs=41.5
Q ss_pred cccCCCCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccCC
Q 010385 284 ELDASDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 284 ~~~~~~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
....++..|.||++...+++.+||||. ||..|+.. ...||+||.++..
T Consensus 10 ~~~~~~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~----~~~CP~CR~~i~~ 58 (68)
T 2ea5_A 10 PSEENSKDCVVCQNGTVNWVLLPCRHTCLCDGCVKY----FQQCPMCRQFVQE 58 (68)
T ss_dssp CSCCCSSCCSSSSSSCCCCEETTTTBCCSCTTHHHH----CSSCTTTCCCCCC
T ss_pred ccCCCCCCCCCcCcCCCCEEEECCCChhhhHHHHhc----CCCCCCCCcchhc
Confidence 344567899999999999999999999 99999974 5789999999864
No 61
>2f42_A STIP1 homology and U-box containing protein 1; chaperone; 2.50A {Danio rerio} PDB: 2c2v_S 2oxq_C
Probab=98.65 E-value=5.5e-09 Score=96.14 Aligned_cols=49 Identities=18% Similarity=0.121 Sum_probs=43.6
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhc-CCCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLER-QHTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~-~~~CP~Cr~~~~~ 335 (512)
.....|+||.+.|.+|+.+||||.||..||..|+.. +.+||.||.++..
T Consensus 104 p~~f~CPI~~elm~DPV~~~~Ghtfer~~I~~~l~~~~~tcP~t~~~l~~ 153 (179)
T 2f42_A 104 PDYLCGKISFELMREPCITPSGITYDRKDIEEHLQRVGHFDPVTRSPLTQ 153 (179)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHTCSBCTTTCCBCCG
T ss_pred cHhhcccCccccCCCCeECCCCCEECHHHHHHHHHhCCCCCCCCcCCCCh
Confidence 356799999999999999999999999999999976 3579999998753
No 62
>2ecg_A Baculoviral IAP repeat-containing protein 4; BIRC4, ring domian, zinc-binding domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.57 E-value=2e-08 Score=79.20 Aligned_cols=43 Identities=26% Similarity=0.650 Sum_probs=38.4
Q ss_pred CCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
+..|.||++.+.+++.+||||. ||..|+.+ ...||+||.++..
T Consensus 25 ~~~C~IC~~~~~~~~~~pCgH~~~C~~C~~~----~~~CP~Cr~~i~~ 68 (75)
T 2ecg_A 25 EKLCKICMDRNIAIVFVPCGHLVTCKQCAEA----VDKCPMCYTVITF 68 (75)
T ss_dssp HHSCSSSCSSCCCBCCSSSCCCCBCHHHHHH----CSBCTTTCCBCCC
T ss_pred CCCCCcCCCCCCCEEEecCCCHHHHHHHhhC----CCCCccCCceecC
Confidence 4689999999999999999999 99999964 4789999998854
No 63
>3hcs_A TNF receptor-associated factor 6; cross-brace, beta-BETA-alpha, coiled coil, cytoplasm, metal- binding, UBL conjugation, UBL conjugation pathway; 2.20A {Homo sapiens}
Probab=98.57 E-value=1.5e-08 Score=92.93 Aligned_cols=49 Identities=27% Similarity=0.588 Sum_probs=43.8
Q ss_pred CCCCcccccccccccCeEeccCcccChhhHHHHHhcC-CCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQ-HTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~-~~CP~Cr~~~~~ 335 (512)
.++..|+||++.+.+|+.++|||.||..|+.+|+... .+||.||..+..
T Consensus 16 ~~~~~C~IC~~~~~~pv~~~CgH~fC~~Ci~~~~~~~~~~CP~Cr~~~~~ 65 (170)
T 3hcs_A 16 ESKYECPICLMALREAVQTPCGHRFCKACIIKSIRDAGHKCPVDNEILLE 65 (170)
T ss_dssp CGGGBCTTTCSBCSSEEECTTSCEEEHHHHHHHHHHHCSBCTTTCCBCCG
T ss_pred CCCCCCCCCChhhcCcEECCCCCHHHHHHHHHHHHhCCCCCCCCccCcch
Confidence 4567999999999999999999999999999999764 499999998864
No 64
>3k1l_B Fancl; UBC, ring, RWD, ligase; HET: MAL CIT; 3.20A {Drosophila melanogaster}
Probab=98.51 E-value=4.3e-08 Score=97.53 Aligned_cols=49 Identities=24% Similarity=0.565 Sum_probs=39.1
Q ss_pred CCCCcccccccccccCeE--------eccCcccChhhHHHHHhcC-----------CCCCCCCCccCC
Q 010385 287 ASDSTCIICREEMTTAKK--------LICGHLFHVHCLRSWLERQ-----------HTCPTCRALVVP 335 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~--------l~C~H~fh~~Cl~~wl~~~-----------~~CP~Cr~~~~~ 335 (512)
....+|+||++.+.+... .+|||.||..||.+|+... .+||+||+++..
T Consensus 306 e~~~ECaICys~~l~~g~lPdk~C~n~~C~h~FH~~CL~kWLrs~~~sRqSFnvi~G~CPyCr~pIs~ 373 (381)
T 3k1l_B 306 NEELRCNICFAYRLDGGEVPLVSCDNAKCVLKCHAVCLEEWFKTLMDGKTFLEVSFGQCPFCKAKLST 373 (381)
T ss_dssp CSCCSCSSSCCSSCTTCCCCCBCCSCTTCCCCBCSGGGHHHHHHHHSSSCTTTCCEEECTTTCCEEEG
T ss_pred cCCccCcccceeecCCCCCccccccCCccCCccchHHHHHHHHhCCCccccccccCCCCCCCCCcCCc
Confidence 456789999999876222 3699999999999999752 369999998853
No 65
>2bay_A PRE-mRNA splicing factor PRP19; U-BOX, ubiquitin ligase, E3 ligase; 1.50A {Saccharomyces cerevisiae} SCOP: g.44.1.2 PDB: 1n87_A
Probab=98.50 E-value=2.5e-08 Score=75.42 Aligned_cols=48 Identities=10% Similarity=0.109 Sum_probs=43.5
Q ss_pred CCcccccccccccCeEe-ccCcccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
...|+||.+.|++|+.+ +|||.|.+.||.+|+.++.+||+++.++...
T Consensus 3 ~~~CpIs~~~m~dPV~~~~sG~~yer~~I~~~l~~~~~cP~t~~~L~~~ 51 (61)
T 2bay_A 3 HMLCAISGKVPRRPVLSPKSRTIFEKSLLEQYVKDTGNDPITNEPLSIE 51 (61)
T ss_dssp -CCCTTTCSCCSSEEEETTTTEEEEHHHHHHHHHHHSBCTTTCCBCCGG
T ss_pred eEEecCCCCCCCCCEEeCCCCcEEcHHHHHHHHHhCCCCcCCcCCCChh
Confidence 36799999999999999 8999999999999998888899999988644
No 66
>2yho_A E3 ubiquitin-protein ligase mylip; ligase, E2 ligase-E3 ligase complex, ring zinc-finger, UBL conjugation pathway; 2.10A {Homo sapiens} PDB: 2yhn_A
Probab=98.47 E-value=3.5e-08 Score=78.73 Aligned_cols=43 Identities=30% Similarity=0.678 Sum_probs=38.7
Q ss_pred CCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
+..|.||++...+++.+||||. ||..|+..| ..||+||.++..
T Consensus 18 ~~~C~IC~~~~~~~v~~pCgH~~~C~~C~~~~----~~CP~Cr~~i~~ 61 (79)
T 2yho_A 18 AMLCMVCCEEEINSTFCPCGHTVCCESCAAQL----QSCPVCRSRVEH 61 (79)
T ss_dssp HTBCTTTSSSBCCEEEETTCBCCBCHHHHTTC----SBCTTTCCBCCE
T ss_pred CCEeEEeCcccCcEEEECCCCHHHHHHHHHhc----CcCCCCCchhhC
Confidence 4589999999999999999999 999999877 489999999854
No 67
>1vyx_A ORF K3, K3RING; zinc-binding protein, ring domain, cross-brace motif; NMR {Human herpesvirus 8} SCOP: g.44.1.3
Probab=98.41 E-value=1.5e-07 Score=70.79 Aligned_cols=48 Identities=29% Similarity=0.696 Sum_probs=39.4
Q ss_pred CCCCcccccccccccCeEeccC--c---ccChhhHHHHHhc--CCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKLICG--H---LFHVHCLRSWLER--QHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C~--H---~fh~~Cl~~wl~~--~~~CP~Cr~~~~ 334 (512)
++...|.||+++..++..+||. | .||..||.+|+.. +.+||+||.++.
T Consensus 4 ~~~~~CrIC~~~~~~~l~~PC~C~gs~~~~H~~Cl~~W~~~~~~~~C~~C~~~~~ 58 (60)
T 1vyx_A 4 EDVPVCWICNEELGNERFRACGCTGELENVHRSCLSTWLTISRNTACQICGVVYN 58 (60)
T ss_dssp CSCCEETTTTEECSCCCCCSCCCSSGGGSCCHHHHHHHHHHHTCSBCTTTCCBCC
T ss_pred CCCCEeEEeecCCCCceecCcCCCCchhhhHHHHHHHHHHhCCCCccCCCCCeee
Confidence 3567899999987776778865 4 8999999999964 678999998764
No 68
>3htk_C E3 SUMO-protein ligase MMS21; SUMO E3 ligase, SPL-ring, ring, ATP-binding, chromosomal protein, coiled coil, DNA damage; 2.31A {Saccharomyces cerevisiae}
Probab=98.34 E-value=3e-07 Score=88.70 Aligned_cols=48 Identities=23% Similarity=0.506 Sum_probs=42.0
Q ss_pred CCCcccccccccccCeEe-ccCcccChhhHHHHHhcC--CCCCC--CCCccCC
Q 010385 288 SDSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLERQ--HTCPT--CRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~~~--~~CP~--Cr~~~~~ 335 (512)
.+..|+||++.|.+|+.. .|||.||..||..|+..+ .+||. ||+.+..
T Consensus 180 ~el~CPIcl~~f~DPVts~~CGHsFcR~cI~~~~~~~~~~~CPvtGCr~~l~~ 232 (267)
T 3htk_C 180 IELTCPITCKPYEAPLISRKCNHVFDRDGIQNYLQGYTTRDCPQAACSQVVSM 232 (267)
T ss_dssp CCSBCTTTSSBCSSEEEESSSCCEEEHHHHHHHSTTCSCEECSGGGCSCEECG
T ss_pred eeeECcCccCcccCCeeeCCCCCcccHHHHHHHHHhCCCCCCCcccccCcCch
Confidence 457899999999999985 999999999999999764 46999 9998753
No 69
>3t6p_A Baculoviral IAP repeat-containing protein 2; ring, BIR, CARD, UBA, apoptosis, ubiquitin ligase, SMAC/ ubiquitin, caspase, IAP family, SMAC mimetic; 1.90A {Homo sapiens} PDB: 1qbh_A 2l9m_A 3eb5_A 3eb6_A 4auq_B
Probab=98.32 E-value=1.3e-07 Score=96.06 Aligned_cols=43 Identities=30% Similarity=0.798 Sum_probs=39.8
Q ss_pred CCCcccccccccccCeEeccCcc-cChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKLICGHL-FHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~-fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
.+..|+||++.+.+++.+||||. ||..|+..| ..||+||.++.
T Consensus 294 ~~~~C~IC~~~~~~~v~lpCgH~~fC~~C~~~~----~~CP~CR~~i~ 337 (345)
T 3t6p_A 294 EERTCKVCMDKEVSVVFIPCGHLVVCQECAPSL----RKCPICRGIIK 337 (345)
T ss_dssp TTCBCTTTSSSBCCEEEETTCCEEECTTTGGGC----SBCTTTCCBCC
T ss_pred CCCCCCccCCcCCceEEcCCCChhHhHHHHhcC----CcCCCCCCCcc
Confidence 46789999999999999999999 999999988 78999999885
No 70
>1wim_A KIAA0161 protein; ring finger domain, UBCM4-interacting protein 4, UIP4, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=98.17 E-value=6.7e-07 Score=73.54 Aligned_cols=45 Identities=27% Similarity=0.677 Sum_probs=37.5
Q ss_pred CCCcccccccccccCeEe---ccCcccChhhHHHHHhc--------CCCCCC--CCCc
Q 010385 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER--------QHTCPT--CRAL 332 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~--------~~~CP~--Cr~~ 332 (512)
...+|+||++++..++.+ +|||.||..|+..++.. ...||. |+..
T Consensus 4 ~~~~C~IC~~~~~~~~~~~l~~CgH~FC~~Cl~~~~~~~i~~g~~~~i~CP~~~C~~~ 61 (94)
T 1wim_A 4 GSSGCKLCLGEYPVEQMTTIAQCQCIFCTLCLKQYVELLIKEGLETAISCPDAACPKQ 61 (94)
T ss_dssp SBCCCSSSCCCCBGGGEEEETTTTEEEEHHHHHHHHHHHHHHCSCCCEECSCTTCSSC
T ss_pred CCcCCcccCcccccccceEcCCCCCcccHHHHHHHHHHHhhcCCcccccCccccCCCC
Confidence 356899999999887654 79999999999998853 236999 9987
No 71
>3vk6_A E3 ubiquitin-protein ligase hakai; HYB, phosphotyrosine binding domain; 1.90A {Mus musculus}
Probab=97.67 E-value=2.1e-05 Score=64.14 Aligned_cols=45 Identities=22% Similarity=0.515 Sum_probs=36.9
Q ss_pred ccccccccccc-CeEeccCcccChhhHHHHHh-cCCCCCCCCCccCC
Q 010385 291 TCIICREEMTT-AKKLICGHLFHVHCLRSWLE-RQHTCPTCRALVVP 335 (512)
Q Consensus 291 ~C~IC~~~~~~-~~~l~C~H~fh~~Cl~~wl~-~~~~CP~Cr~~~~~ 335 (512)
.|.+|--.+.. ++.+||+|+||.+|+..|.+ +.++||.|+.++..
T Consensus 3 fC~~C~~Pi~iygRmIPCkHvFCydCa~~~~~~~~k~Cp~C~~~V~r 49 (101)
T 3vk6_A 3 FCDKCGLPIKVYGRMIPCKHVFCYDCAILHEKKGDKMCPGCSDPVQR 49 (101)
T ss_dssp BCTTTCSBCSEEEEEETTCCEEEHHHHHHHHHTTCCBCTTTCCBCSE
T ss_pred ecCccCCCeEEEeeeccccccHHHHHHHHHHhccCCCCcCcCCeeee
Confidence 47777766654 46789999999999999985 47899999999864
No 72
>3nw0_A Non-structural maintenance of chromosomes element homolog; E3 ligase, Zn, metal binding protein; 2.92A {Homo sapiens}
Probab=97.59 E-value=5.3e-05 Score=72.94 Aligned_cols=47 Identities=21% Similarity=0.607 Sum_probs=40.2
Q ss_pred CCcccccccccccCeEec-cCcccChhhHHHHHhcC--CCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLI-CGHLFHVHCLRSWLERQ--HTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~-C~H~fh~~Cl~~wl~~~--~~CP~Cr~~~~~ 335 (512)
-..|.||.+....+.+-+ |+|.||..|+..|+..+ ..||.|+..+..
T Consensus 180 i~~C~iC~~iv~~g~~C~~C~~~~H~~C~~~~~~~~~~~~CP~C~~~W~~ 229 (238)
T 3nw0_A 180 VKICNICHSLLIQGQSCETCGIRMHLPCVAKYFQSNAEPRCPHCNDYWPH 229 (238)
T ss_dssp CCBCTTTCSBCSSCEECSSSCCEECHHHHHHHTTTCSSCBCTTTCCBCCS
T ss_pred CCcCcchhhHHhCCcccCccChHHHHHHHHHHHHhCCCCCCCCCCCCCCC
Confidence 568999999998887665 99999999999999764 489999998754
No 73
>2ko5_A Ring finger protein Z; lassa fever virus-Z, negative regulator of EIF4E, cytoplasm, HOST-virus interaction, lipoprotein, membrane; NMR {Lassa virus josiah}
Probab=95.53 E-value=0.016 Score=46.43 Aligned_cols=47 Identities=23% Similarity=0.535 Sum_probs=38.8
Q ss_pred CCCcccccccccccCeEeccC-cccChhhHHHHHhcCCCCCCCCCccCCC
Q 010385 288 SDSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVPP 336 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~-H~fh~~Cl~~wl~~~~~CP~Cr~~~~~~ 336 (512)
+-..|..|+-..+ -.+.|. |.+|..|+...|.....||+|+.++...
T Consensus 27 G~~nCKsCWf~~k--~LV~C~dHYLCl~CLtlmL~~SdrCpIC~~pLPtk 74 (99)
T 2ko5_A 27 GPQFCKSCWFENK--GLVECNNHYLCLNCLTLLLSVSNRCPICKMPLPTK 74 (99)
T ss_dssp CCCCCCSSCSCCS--SEEECSSCEEEHHHHHHTCSSSSEETTTTEECCCC
T ss_pred CcccChhhccccC--CeeeecchhhHHHHHHHHHhhccCCcccCCcCCcc
Confidence 3467999997654 456675 9999999999999999999999999754
No 74
>3m62_A Ubiquitin conjugation factor E4; armadillo-like repeats, UBL conjugation pathway, DNA damage, nucleus, phosphoprotein; HET: 1PE; 2.40A {Saccharomyces cerevisiae} PDB: 3m63_A* 2qiz_A 2qj0_A
Probab=93.83 E-value=0.073 Score=60.08 Aligned_cols=48 Identities=13% Similarity=-0.011 Sum_probs=44.1
Q ss_pred CCCcccccccccccCeEeccC-cccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICG-HLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~-H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
+...|+|-.+.|.+|+.+|.| +.+-+.+|.+|+..+.+||.=|.++..
T Consensus 890 ~~F~cPIs~~lM~DPVilpsG~~TydR~~I~~wl~~~~tdP~Tr~~L~~ 938 (968)
T 3m62_A 890 DEFLDPLMYTIMKDPVILPASKMNIDRSTIKAHLLSDSTDPFNRMPLKL 938 (968)
T ss_dssp GGGBCTTTCSBCSSEEECTTTCCEEEHHHHHHHHTTCCBCTTTCCBCCG
T ss_pred HHhCCcchhhHHhCCeEcCCCCEEECHHHHHHHHhcCCCCCCCCCCCCc
Confidence 467899999999999999998 589999999999999999999998864
No 75
>2jun_A Midline-1; B-BOX, TRIM, ring finger, alternative splicing, coiled coil, cytoplasm, cytoskeleton, disease mutation, ligase, metal-binding; NMR {Homo sapiens}
Probab=92.48 E-value=0.049 Score=44.52 Aligned_cols=31 Identities=23% Similarity=0.565 Sum_probs=26.4
Q ss_pred CCcccccccc-cccCeE--eccCcccChhhHHHH
Q 010385 289 DSTCIICREE-MTTAKK--LICGHLFHVHCLRSW 319 (512)
Q Consensus 289 ~~~C~IC~~~-~~~~~~--l~C~H~fh~~Cl~~w 319 (512)
+..|.||.++ ..++++ +.|+|.||..|+..+
T Consensus 3 e~~C~~C~~~~~~~av~~C~~C~~~~C~~Cl~~~ 36 (101)
T 2jun_A 3 KVLCQFCDQDPAQDAVKTCVTCEVSYCDECLKAT 36 (101)
T ss_dssp CCBCTTCCSSSCCBCCEEETTTTEEECHHHHHHH
T ss_pred CCCCcCCCCCCCCCceEECCcCChHHhHHHCHHH
Confidence 5689999976 567776 899999999999983
No 76
>1wil_A KIAA1045 protein; ring finger domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Homo sapiens} SCOP: g.50.1.3
Probab=91.11 E-value=0.2 Score=39.27 Aligned_cols=32 Identities=31% Similarity=0.689 Sum_probs=24.5
Q ss_pred CCCCcccccccccccCeEec---cCcccChhhHHHH
Q 010385 287 ASDSTCIICREEMTTAKKLI---CGHLFHVHCLRSW 319 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~---C~H~fh~~Cl~~w 319 (512)
..|+.|.||-. +....++| |+-+||..|+++-
T Consensus 13 ~~D~~C~VC~~-~t~~~l~pCRvC~RvfH~~CL~r~ 47 (89)
T 1wil_A 13 VNDEMCDVCEV-WTAESLFPCRVCTRVFHDGCLRRM 47 (89)
T ss_dssp CCSCCCTTTCC-CCSSCCSSCSSSSSCCCHHHHHHH
T ss_pred CCCcccCcccc-ccccceeccccccccccHhhcccc
Confidence 46889999963 33555666 6799999999996
No 77
>2lri_C Autoimmune regulator; Zn binding protein domain, apeced, transcription; NMR {Homo sapiens}
Probab=90.97 E-value=0.17 Score=38.26 Aligned_cols=44 Identities=25% Similarity=0.529 Sum_probs=32.2
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhcC----CCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQ----HTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~~----~~CP~Cr~~~ 333 (512)
..+..|.||.+. ...+ .|...||..|+++.+... -.||.|+...
T Consensus 10 ~~~~~C~vC~~~---~~ll~Cd~C~~~~H~~Cl~P~l~~~P~g~W~C~~C~~~~ 60 (66)
T 2lri_C 10 APGARCGVCGDG---TDVLRCTHCAAAFHWRCHFPAGTSRPGTGLRCRSCSGDV 60 (66)
T ss_dssp CTTCCCTTTSCC---TTCEECSSSCCEECHHHHCTTTCCCCSSSCCCTTTTTCC
T ss_pred CCCCCcCCCCCC---CeEEECCCCCCceecccCCCccCcCCCCCEECccccCCC
Confidence 345689999864 2333 478899999999888653 3699997653
No 78
>1mm2_A MI2-beta; PHD, zinc finger, protein scaffold, DNA binding protein; NMR {Homo sapiens} SCOP: g.50.1.2 PDB: 2l75_A* 1mm3_A
Probab=78.99 E-value=0.82 Score=33.74 Aligned_cols=45 Identities=29% Similarity=0.748 Sum_probs=31.2
Q ss_pred cCCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCcc
Q 010385 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALV 333 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~~ 333 (512)
+..+..|.+|.+. ...+ .|...||..|+.+-+.. .-.||.|+...
T Consensus 6 d~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 57 (61)
T 1mm2_A 6 DHHMEFCRVCKDG---GELLCCDTCPSSYHIHCLNPPLPEIPNGEWLCPRCTCPA 57 (61)
T ss_dssp CSSCSSCTTTCCC---SSCBCCSSSCCCBCSSSSSSCCSSCCSSCCCCTTTTTTC
T ss_pred cCCCCcCCCCCCC---CCEEEcCCCCHHHcccccCCCcCcCCCCccCChhhcCch
Confidence 3557789999863 2333 47788999999865443 33599997643
No 79
>2cs3_A Protein C14ORF4, MY039 protein; ZF-C3HC4 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.44.1.3
Probab=77.04 E-value=2.4 Score=32.81 Aligned_cols=36 Identities=25% Similarity=0.599 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCeEecc----CcccChhhHHHHHhc
Q 010385 287 ASDSTCIICREEMTTAKKLIC----GHLFHVHCLRSWLER 322 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C----~H~fh~~Cl~~wl~~ 322 (512)
.....|.+|.+.+++.-.+.| +|.||..|-+..+++
T Consensus 13 ~a~l~CtlC~erLEdtHFVQCPsv~~HkFCFpCsr~sIk~ 52 (93)
T 2cs3_A 13 SGPLCCTICHERLEDTHFVQCPSVPSHKFCFPCSRESIKA 52 (93)
T ss_dssp CCSCCCSSSCSCCSSTTSEECSSCSSCEECHHHHHHHHHH
T ss_pred CCeeEeecchhhhccCceeeCCCccCCeeeccccHHHHHh
Confidence 456789999999999877776 699999999998865
No 80
>3u5n_A E3 ubiquitin-protein ligase TRIM33; TRIM33, PHD, bromodomain, TGF-beta, epigenetics, methylation, K9ME3, K14AC, transcription; HET: M3L ALY; 1.95A {Homo sapiens} PDB: 3u5m_A* 3u5o_A* 3u5p_A*
Probab=76.62 E-value=0.64 Score=43.18 Aligned_cols=44 Identities=25% Similarity=0.616 Sum_probs=31.7
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~~ 333 (512)
..++.|.+|.+.- ..+ .|...||..|+.+-+.. .-.||.|+..-
T Consensus 5 ~~~~~C~~C~~~g---~ll~Cd~C~~~~H~~Cl~p~l~~~p~~~W~C~~C~~~~ 55 (207)
T 3u5n_A 5 PNEDWCAVCQNGG---DLLCCEKCPKVFHLTCHVPTLLSFPSGDWICTFCRDIG 55 (207)
T ss_dssp SSCSSBTTTCCCE---EEEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCCCCCCCCCCC---ceEEcCCCCCccCCccCCCCCCCCCCCCEEeCceeCcc
Confidence 4567899998542 233 47788999999887654 34699997643
No 81
>3o36_A Transcription intermediary factor 1-alpha; TRIM24, PHD finger, bromodomain, H4K16 acetylation, breast C transcription-protein binding complex; HET: ALY; 1.70A {Homo sapiens} PDB: 3o33_A* 3o34_A* 3o35_A* 3o37_A
Probab=76.36 E-value=1.7 Score=39.39 Aligned_cols=43 Identities=28% Similarity=0.723 Sum_probs=31.1
Q ss_pred CCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCcc
Q 010385 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALV 333 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~~ 333 (512)
.++.|.+|.+. +..+ .|.-.||..|+.+-+.. .-.||.|+..-
T Consensus 3 ~~~~C~~C~~~---g~ll~Cd~C~~~~H~~C~~p~l~~~p~~~W~C~~C~~~~ 52 (184)
T 3o36_A 3 NEDWCAVCQNG---GELLCCEKCPKVFHLSCHVPTLTNFPSGEWICTFCRDLS 52 (184)
T ss_dssp SCSSCTTTCCC---SSCEECSSSSCEECTTTSSSCCSSCCSSCCCCTTTSCSS
T ss_pred CCCccccCCCC---CeeeecCCCCcccCccccCCCCCCCCCCCEECccccCcc
Confidence 46789999865 2333 47788999999876654 34699998654
No 82
>1weo_A Cellulose synthase, catalytic subunit (IRX3); structure genomics, ring-finger, riken structural genomics/proteomics initiative, RSGI; NMR {Arabidopsis thaliana} SCOP: g.44.1.1
Probab=72.32 E-value=17 Score=28.78 Aligned_cols=49 Identities=20% Similarity=0.431 Sum_probs=35.2
Q ss_pred CCCcccccccccccC----eEe---ccCcccChhhHHHHH-hcCCCCCCCCCccCCC
Q 010385 288 SDSTCIICREEMTTA----KKL---ICGHLFHVHCLRSWL-ERQHTCPTCRALVVPP 336 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~----~~l---~C~H~fh~~Cl~~wl-~~~~~CP~Cr~~~~~~ 336 (512)
....|.||-|+.-.. ... .|+--.|+.|+.-=. +.++.||-|+......
T Consensus 15 ~~qiCqiCGD~VG~~~~Ge~FVAC~eC~FPvCrpCyEYErkeG~q~CpqCktrYkr~ 71 (93)
T 1weo_A 15 DGQFCEICGDQIGLTVEGDLFVACNECGFPACRPCYEYERREGTQNCPQCKTRYKRL 71 (93)
T ss_dssp SSCBCSSSCCBCCBCSSSSBCCSCSSSCCCCCHHHHHHHHHTSCSSCTTTCCCCCCC
T ss_pred CCCccccccCccccCCCCCEEEeeeccCChhhHHHHHHHHhccCccccccCCccccc
Confidence 456899999986432 222 367678999987643 5588999999888643
No 83
>1fp0_A KAP-1 corepressor; PHD domain, C3HC4 type zinc binding domain, -structure, transcription; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=71.22 E-value=3.3 Score=32.95 Aligned_cols=44 Identities=27% Similarity=0.720 Sum_probs=31.3
Q ss_pred cCCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCc
Q 010385 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (512)
+..+..|.+|.+. ...+ .|.-.||..|+.+=+.. .-.||.|+..
T Consensus 22 d~n~~~C~vC~~~---g~LL~CD~C~~~fH~~Cl~PpL~~~P~g~W~C~~C~~~ 72 (88)
T 1fp0_A 22 DDSATICRVCQKP---GDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 72 (88)
T ss_dssp SSSSSCCSSSCSS---SCCEECTTSSCEECTTSSSTTCCCCCSSSCCCCSCCCC
T ss_pred CCCCCcCcCcCCC---CCEEECCCCCCceecccCCCCCCCCcCCCcCCccccCC
Confidence 4567789999975 2344 46778999999876544 3359999754
No 84
>1f62_A Transcription factor WSTF; Zn-finger; NMR {Homo sapiens} SCOP: g.50.1.2
Probab=69.09 E-value=1.9 Score=30.28 Aligned_cols=41 Identities=34% Similarity=0.868 Sum_probs=28.0
Q ss_pred cccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCC
Q 010385 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~ 331 (512)
.|.+|.+.-.....+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 2 ~C~vC~~~~~~~~ll~Cd~C~~~~H~~Cl~p~l~~~P~g~W~C~~C~~ 49 (51)
T 1f62_A 2 RCKVCRKKGEDDKLILCDECNKAFHLFCLRPALYEVPDGEWQCPACQP 49 (51)
T ss_dssp CCTTTCCSSCCSCCEECTTTCCEECHHHHCTTCCSCCSSCCSCTTTSC
T ss_pred CCCCCCCCCCCCCEEECCCCChhhCcccCCCCcCCCCCCcEECcCccc
Confidence 588888765444444 47788999999764433 335999965
No 85
>2l5u_A Chromodomain-helicase-DNA-binding protein 4; CHD4, MI2B, MI2-beta, PHD, protein binding, peptide binding metal binding protein; NMR {Homo sapiens}
Probab=68.39 E-value=1.4 Score=32.49 Aligned_cols=43 Identities=23% Similarity=0.743 Sum_probs=30.5
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCc
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (512)
..+..|.+|.+. ...+ .|...||..|+..-+.. .-.||.|+..
T Consensus 9 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~p~l~~~p~g~W~C~~C~~~ 58 (61)
T 2l5u_A 9 DHQDYCEVCQQG---GEIILCDTCPRAYHMVCLDPDMEKAPEGKWSCPHCEKE 58 (61)
T ss_dssp CCCSSCTTTSCC---SSEEECSSSSCEEEHHHHCTTCCSCCCSSCCCTTGGGG
T ss_pred CCCCCCccCCCC---CcEEECCCCChhhhhhccCCCCCCCCCCceECcccccc
Confidence 456789999874 3444 47778999999875533 3469999653
No 86
>2k16_A Transcription initiation factor TFIID subunit 3; protein, alternative splicing, metal-binding, nucleus, phosphoprotein, transcription regulation; NMR {Mus musculus} PDB: 2k17_A*
Probab=63.91 E-value=1.1 Score=34.36 Aligned_cols=47 Identities=19% Similarity=0.415 Sum_probs=32.2
Q ss_pred CCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~~~ 334 (512)
.+..|.+|.........+ .|.-.||..|+..-... .-.||.|+..+.
T Consensus 17 ~~~~C~~C~~~~~~~~mi~CD~C~~wfH~~Cv~~~~~~~~~~~w~C~~C~~~~~ 70 (75)
T 2k16_A 17 QIWICPGCNKPDDGSPMIGCDDCDDWYHWPCVGIMAAPPEEMQWFCPKCANKIK 70 (75)
T ss_dssp EEECBTTTTBCCSSCCEEECSSSSSEEEHHHHTCSSCCCSSSCCCCTTTHHHHC
T ss_pred CCcCCCCCCCCCCCCCEEEcCCCCcccccccCCCCccCCCCCCEEChhccCchh
Confidence 345699998775433344 47788999999764432 346999977654
No 87
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=62.43 E-value=2.4 Score=35.06 Aligned_cols=44 Identities=25% Similarity=0.705 Sum_probs=30.6
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCR 330 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr 330 (512)
..++.|.+|.+.-+....+ .|+..||..|+...... .-.||.|+
T Consensus 5 ~~~~~C~~C~~~g~~~~ll~C~~C~~~~H~~Cl~~~~~~~~~~~W~C~~C~ 55 (111)
T 2ysm_A 5 SSGANCAVCDSPGDLLDQFFCTTCGQHYHGMCLDIAVTPLKRAGWQCPECK 55 (111)
T ss_dssp CCCSCBTTTCCCCCTTTSEECSSSCCEECTTTTTCCCCTTTSTTCCCTTTC
T ss_pred CCCCCCcCCCCCCCCcCCeECCCCCCCcChHHhCCccccccccCccCCcCC
Confidence 4577999998875433223 58899999999887642 23477664
No 88
>2ro1_A Transcription intermediary factor 1-beta; KAP, TIF, PHD finger, bromodomain, SUMO, acetylation, alternative splicing, metal-binding, nucleus; NMR {Homo sapiens}
Probab=62.37 E-value=2.5 Score=38.57 Aligned_cols=44 Identities=23% Similarity=0.575 Sum_probs=29.2
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhc----CCCCCCCCCc
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (512)
++.|.+|.+.-.--.--.|...||..|+.+=+.. .-.||.|+..
T Consensus 2 ~~~C~~C~~~g~ll~Cd~C~~~~H~~Cl~p~l~~~p~g~W~C~~C~~~ 49 (189)
T 2ro1_A 2 ATICRVCQKPGDLVMCNQCEFCFHLDCHLPALQDVPGEEWSCSLCHVL 49 (189)
T ss_dssp CCCBTTTCCCSSCCCCTTTCCBCCSTTSTTCCSSCCCTTCCTTTTSCS
T ss_pred CCcCccCCCCCceeECCCCCchhccccCCCCcccCCCCCCCCcCccCC
Confidence 5679999865321111247788999999764433 3359999765
No 89
>2yql_A PHD finger protein 21A; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=60.80 E-value=0.91 Score=32.80 Aligned_cols=42 Identities=29% Similarity=0.852 Sum_probs=28.5
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~ 331 (512)
..+..|.+|.+. ...+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 7 ~~~~~C~vC~~~---g~ll~Cd~C~~~~H~~Cl~ppl~~~p~g~W~C~~C~~ 55 (56)
T 2yql_A 7 GHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQD 55 (56)
T ss_dssp SSCCSCSSSCCS---SCCEECSSSSCEECSSSSSSCCCSCCCSSCCCHHHHC
T ss_pred CCCCCCccCCCC---CeEEEcCCCCcceECccCCCCcCCCCCCceEChhhhC
Confidence 456789999875 2333 47788999999864433 224777743
No 90
>2puy_A PHD finger protein 21A; PHD finger, histone CODE, BRAF-HDAC complex, transcription; 1.43A {Homo sapiens}
Probab=60.65 E-value=0.62 Score=34.21 Aligned_cols=44 Identities=27% Similarity=0.804 Sum_probs=30.4
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~~ 333 (512)
..+..|.+|.+. ...+ .|...||..|+.+=+.. .-.||.|+...
T Consensus 3 ~~~~~C~vC~~~---g~ll~Cd~C~~~fH~~Cl~ppl~~~p~g~W~C~~C~~~~ 53 (60)
T 2puy_A 3 IHEDFCSVCRKS---GQLLMCDTCSRVYHLDCLDPPLKTIPKGMWICPRCQDQM 53 (60)
T ss_dssp CCCSSCTTTCCC---SSCEECSSSSCEECGGGSSSCCSSCCCSCCCCHHHHHHH
T ss_pred CCCCCCcCCCCC---CcEEEcCCCCcCEECCcCCCCcCCCCCCceEChhccChh
Confidence 356789999874 2333 47788999999864433 33588886554
No 91
>3lqh_A Histone-lysine N-methyltransferase MLL; PHD finger, bromodomain, leukemia, apoptosis, chromati regulator, DNA-binding, isopeptide bond; 1.72A {Homo sapiens} PDB: 3lqi_A* 3lqj_A* 2kyu_A
Probab=58.75 E-value=3.7 Score=37.30 Aligned_cols=45 Identities=20% Similarity=0.442 Sum_probs=31.3
Q ss_pred CCcccccccccccCe----Ee---ccCcccChhhHHHH------Hh-----cCCCCCCCCCcc
Q 010385 289 DSTCIICREEMTTAK----KL---ICGHLFHVHCLRSW------LE-----RQHTCPTCRALV 333 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~----~l---~C~H~fh~~Cl~~w------l~-----~~~~CP~Cr~~~ 333 (512)
+..|+||...+.+.. .+ .|..-||..|..-= +. ..-.||.|+..-
T Consensus 2 G~~CpiC~k~Y~~~~~~~~MIqCd~C~~W~H~~Cvgi~~~~~e~~~~~pe~~~y~Cp~C~~~~ 64 (183)
T 3lqh_A 2 GNFCPLCDKCYDDDDYESKMMQCGKCDRWVHSKCENLSDEMYEILSNLPESVAYTCVNCTERH 64 (183)
T ss_dssp CCBCTTTCCBCTTCCTTCCEEECTTTCCEEEGGGSSCCHHHHHHHHHSHHHHCCCCTTTCCSS
T ss_pred cCcCCCCcCccCCcccCCCeEECCCCCcccchhccccCHHHHHHhhcCCCCCeeECcCCCCCC
Confidence 457999998887654 44 37888999998431 11 156899997653
No 92
>2e6r_A Jumonji/ARID domain-containing protein 1D; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=57.77 E-value=1.3 Score=35.49 Aligned_cols=46 Identities=26% Similarity=0.560 Sum_probs=31.9
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCc
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (512)
..+..|.||.+.-.....+ .|...||..|+.+=+.. .-.||.|+..
T Consensus 14 ~~~~~C~vC~~~~~~~~ll~CD~C~~~~H~~Cl~Ppl~~~P~g~W~C~~C~~~ 66 (92)
T 2e6r_A 14 IDSYICQVCSRGDEDDKLLFCDGCDDNYHIFCLLPPLPEIPRGIWRCPKCILA 66 (92)
T ss_dssp CCCCCCSSSCCSGGGGGCEECTTTCCEECSSSSSSCCSSCCSSCCCCHHHHHH
T ss_pred cCCCCCccCCCcCCCCCEEEcCCCCchhccccCCCCcccCCCCCcCCccCcCc
Confidence 4466899999875444444 47888999999754433 3359999654
No 93
>2lv9_A Histone-lysine N-methyltransferase MLL5; zinc finger, transcription, protein binding, NESG, northeast structural genomics consortium, SGC; NMR {Homo sapiens}
Probab=57.14 E-value=3.8 Score=33.14 Aligned_cols=42 Identities=19% Similarity=0.484 Sum_probs=28.8
Q ss_pred CCcccccccccccCeEec---cCcccChhhHHHHHhc---CCCCCCCCC
Q 010385 289 DSTCIICREEMTTAKKLI---CGHLFHVHCLRSWLER---QHTCPTCRA 331 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~---C~H~fh~~Cl~~wl~~---~~~CP~Cr~ 331 (512)
...| ||.........+- |.-.||..|+..=... .-.||.|+.
T Consensus 28 ~vrC-iC~~~~~~~~mi~Cd~C~~w~H~~C~~~~~~~~p~~w~C~~C~~ 75 (98)
T 2lv9_A 28 VTRC-ICGFTHDDGYMICCDKCSVWQHIDCMGIDRQHIPDTYLCERCQP 75 (98)
T ss_dssp BCCC-TTSCCSCSSCEEEBTTTCBEEETTTTTCCTTSCCSSBCCTTTSS
T ss_pred CEEe-ECCCccCCCcEEEcCCCCCcCcCcCCCCCccCCCCCEECCCCcC
Confidence 3467 8987766666554 7788999998653322 346999963
No 94
>1wen_A Inhibitor of growth family, member 4; ING1-like protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: g.50.1.2 PDB: 1wes_A
Probab=54.88 E-value=12 Score=28.29 Aligned_cols=42 Identities=24% Similarity=0.676 Sum_probs=27.6
Q ss_pred CCCcccccccccccCeEec-----cC-cccChhhHHHHHhc----CCCCCCCCCcc
Q 010385 288 SDSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRALV 333 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~-----C~-H~fh~~Cl~~wl~~----~~~CP~Cr~~~ 333 (512)
+...| ||..... ...+- |. ..||..|+. +.. .-.||.|+..-
T Consensus 15 ~~~~C-~C~~~~~-g~MI~CD~~~C~~~wfH~~Cvg--l~~~p~g~w~Cp~C~~~~ 66 (71)
T 1wen_A 15 EPTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 66 (71)
T ss_dssp SCCCS-TTCCCSC-SSEECCSCSSCSCCCEETTTTT--CSSCCSSCCCCTTTSSCS
T ss_pred CCCEE-ECCCCCC-CCEeEeeCCCCCCccEecccCC--cCcCCCCCEECCCCCccc
Confidence 44567 8988543 34443 55 689999997 433 34699997643
No 95
>1weu_A Inhibitor of growth family, member 4; structural genomics, PHD domain, ING1-like protein, DNA binding protein, NPPSFA; NMR {Mus musculus} SCOP: g.50.1.2
Probab=53.59 E-value=12 Score=29.93 Aligned_cols=41 Identities=24% Similarity=0.691 Sum_probs=26.7
Q ss_pred CCcccccccccccCeEec-----cC-cccChhhHHHHHhc----CCCCCCCCCcc
Q 010385 289 DSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRALV 333 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~-----C~-H~fh~~Cl~~wl~~----~~~CP~Cr~~~ 333 (512)
...| ||.+... ...+- |. ..||..|+. +.. +-.||.|+..-
T Consensus 36 ~~yC-iC~~~~~-g~MI~CD~~dC~~~WfH~~CVg--l~~~p~g~W~Cp~C~~~~ 86 (91)
T 1weu_A 36 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQES 86 (91)
T ss_dssp CBCS-TTCCBCC-SCCCCCSCSSCSCCCCCSTTTT--CSSCCCSSCCCTTTCCCC
T ss_pred CcEE-ECCCCCC-CCEeEecCCCCCCCCEecccCC--cCcCCCCCEECcCccCcC
Confidence 4456 9988643 33343 55 679999996 332 34699997643
No 96
>1we9_A PHD finger family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=53.19 E-value=1.8 Score=32.04 Aligned_cols=46 Identities=26% Similarity=0.608 Sum_probs=30.8
Q ss_pred CCCCcccccccccccC-eEe---ccCcccChhhHHHHHh-----cCCCCCCCCCc
Q 010385 287 ASDSTCIICREEMTTA-KKL---ICGHLFHVHCLRSWLE-----RQHTCPTCRAL 332 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~-~~l---~C~H~fh~~Cl~~wl~-----~~~~CP~Cr~~ 332 (512)
.++..|.+|.....+. ..+ .|..-||..|+.--.. ....||.|+..
T Consensus 4 ~e~~~C~~C~~~~~~~~~mI~Cd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~k 58 (64)
T 1we9_A 4 GSSGQCGACGESYAADEFWICCDLCEMWFHGKCVKITPARAEHIKQYKCPSCSNK 58 (64)
T ss_dssp SSCCCCSSSCCCCCSSSCEEECSSSCCEEETTTTTCCTTGGGGCSSCCCHHHHTT
T ss_pred CCCCCCCCCCCccCCCCCEEEccCCCCCCCccccCcChhHhcCCCcEECCCCcCc
Confidence 3466899999877533 333 4778899999864322 24569999653
No 97
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=50.73 E-value=4.5 Score=33.52 Aligned_cols=42 Identities=33% Similarity=0.721 Sum_probs=28.7
Q ss_pred Cccccccccccc-CeEe---ccCcccChhhHHHHHhc----CCCCCCCCC
Q 010385 290 STCIICREEMTT-AKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (512)
Q Consensus 290 ~~C~IC~~~~~~-~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~ 331 (512)
..|.+|.+.-.+ ...+ .|...||..|+.+-+.. .-.||.|+.
T Consensus 62 ~~C~vC~~~~~~~~~ll~Cd~C~~~yH~~Cl~p~l~~~P~~~W~C~~C~~ 111 (112)
T 3v43_A 62 KTCSSCRDQGKNADNMLFCDSCDRGFHMECCDPPLTRMPKGMWICQICRP 111 (112)
T ss_dssp CCBTTTCCCCCTTCCCEECTTTCCEECGGGCSSCCSSCCSSCCCCTTTSC
T ss_pred CccccccCcCCCccceEEcCCCCCeeecccCCCCCCCCCCCCeECCCCCC
Confidence 468888875333 2333 48899999999875544 336999975
No 98
>1xwh_A Autoimmune regulator; PHD domain, Zn binding domain, apeced, nucleosome, E3 ligase, transcription; NMR {Homo sapiens} PDB: 2ke1_A 2kft_A
Probab=50.37 E-value=2.5 Score=31.54 Aligned_cols=42 Identities=26% Similarity=0.744 Sum_probs=29.3
Q ss_pred CCCCcccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCC
Q 010385 287 ASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRA 331 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~ 331 (512)
..+..|.||.+. ...+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 6 ~~~~~C~vC~~~---g~ll~CD~C~~~fH~~Cl~ppl~~~P~g~W~C~~C~~ 54 (66)
T 1xwh_A 6 KNEDECAVCRDG---GELICCDGCPRAFHLACLSPPLREIPSGTWRCSSCLQ 54 (66)
T ss_dssp SCCCSBSSSSCC---SSCEECSSCCCEECTTTSSSCCSSCCSSCCCCHHHHH
T ss_pred CCCCCCccCCCC---CCEEEcCCCChhhcccccCCCcCcCCCCCeECccccC
Confidence 457789999874 2333 47788999999864433 335999964
No 99
>2lbm_A Transcriptional regulator ATRX; metal binding protein-structural protein compl; HET: M3L; NMR {Homo sapiens} PDB: 2ld1_A
Probab=48.91 E-value=11 Score=32.69 Aligned_cols=46 Identities=26% Similarity=0.455 Sum_probs=31.3
Q ss_pred cCCCCcccccccccccCeEeccCcccChhhHHHHHh-----------cCCCCCCCCC
Q 010385 286 DASDSTCIICREEMTTAKKLICGHLFHVHCLRSWLE-----------RQHTCPTCRA 331 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~-----------~~~~CP~Cr~ 331 (512)
+..++.|.+|.+--+--.-=.|-..||..|+.+=+. ..-.||.|+.
T Consensus 60 Dg~~d~C~vC~~GG~LlcCD~Cpr~Fh~~Cl~p~l~~~~l~~i~~p~~~W~C~~C~~ 116 (142)
T 2lbm_A 60 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRKELSTIMDENNQWYCYICHP 116 (142)
T ss_dssp TSCBCSCSSSCCCSSEEECSSSCCEEEHHHHHHHTCHHHHHHHHTSTTCCCCTTTCC
T ss_pred CCCCCeecccCCCCcEEeCCCCCCeeeHhhcCCCCChhhhhhcccCCCCCEeecccC
Confidence 455788999987533211115788999999997553 1346999964
No 100
>3shb_A E3 ubiquitin-protein ligase UHRF1; unmodified histone, methylation, UHRF1, PHD, ligase-NUCL protein complex; 1.80A {Homo sapiens}
Probab=48.34 E-value=3.9 Score=31.61 Aligned_cols=41 Identities=34% Similarity=0.799 Sum_probs=27.6
Q ss_pred cccccccccccCeEe---ccCcccChhhHHHHHhc----C-CCCCCCCC
Q 010385 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----Q-HTCPTCRA 331 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~-~~CP~Cr~ 331 (512)
.|.+|...-.....+ .|...||..|+.+-|.. . -.||.|+.
T Consensus 28 ~C~vC~~~~d~~~ll~CD~C~~~yH~~Cl~PpL~~~P~g~~W~C~~C~~ 76 (77)
T 3shb_A 28 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 76 (77)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEETTTSSSCCSSCCSSSCCCCTTTC-
T ss_pred cCCccCCCCCCcceeEeCCCCCccCcccCCCcccCCCCCCceECcCccc
Confidence 466676655445555 47788999999876543 2 46999975
No 101
>2dar_A PDZ and LIM domain protein 5; enigma homolog protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=45.88 E-value=14 Score=28.77 Aligned_cols=40 Identities=15% Similarity=0.424 Sum_probs=31.9
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
....|.-|-+.+.......-+..||.+|+ .|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (90)
T 2dar_A 24 RTPMCAHCNQVIRGPFLVALGKSWHPEEF--------NCAHCKNTMAY 63 (90)
T ss_dssp CCCBBSSSCCBCCSCEEEETTEEECTTTC--------BCSSSCCBCSS
T ss_pred CCCCCccCCCEecceEEEECCccccccCC--------ccCCCCCCCCC
Confidence 35689999998876666678899999885 79999988853
No 102
>3i2d_A E3 SUMO-protein ligase SIZ1; signal transduction, replication, ring E3, PIAS, ubiquitin, UBC9, metal-binding, nucleus; 2.60A {Saccharomyces cerevisiae}
Probab=45.14 E-value=13 Score=37.36 Aligned_cols=45 Identities=24% Similarity=0.462 Sum_probs=32.2
Q ss_pred CCcccccccccccCeEe-ccCcccChhhHHHHHh---c--CCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKL-ICGHLFHVHCLRSWLE---R--QHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l-~C~H~fh~~Cl~~wl~---~--~~~CP~Cr~~~~ 334 (512)
...|++-...+..|.+- .|.|.-|.+- ..|+. + .-.||+|.+.+.
T Consensus 249 SL~CPlS~~ri~~PvRg~~C~HlQCFDl-~sfL~~~~~~~~W~CPIC~k~~~ 299 (371)
T 3i2d_A 249 SLQCPISYTRMKYPSKSINCKHLQCFDA-LWFLHSQLQIPTWQCPVCQIDIA 299 (371)
T ss_dssp ESBCTTTSSBCSSEEEETTCCSSCCEEH-HHHHHHHHHSCCCBCTTTCCBCC
T ss_pred eecCCCccccccccCcCCcCCCcceECH-HHHHHHhhcCCceeCCCCCcccC
Confidence 47899999999888754 6999855443 34443 2 346999998874
No 103
>1wev_A Riken cDNA 1110020M19; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, gene regulation; NMR {Mus musculus} SCOP: g.50.1.2
Probab=44.44 E-value=3 Score=33.06 Aligned_cols=47 Identities=19% Similarity=0.569 Sum_probs=32.9
Q ss_pred CCCccccccccccc--CeEe---ccCcccChhhHHHHHh--------cCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTT--AKKL---ICGHLFHVHCLRSWLE--------RQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~--~~~l---~C~H~fh~~Cl~~wl~--------~~~~CP~Cr~~~~ 334 (512)
.+..|.+|.+.-.. ...+ .|...||..|+.+=+. ..-.||.|+....
T Consensus 15 ~~~~C~vC~~~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~~~~~p~g~W~C~~C~~~~~ 74 (88)
T 1wev_A 15 MGLACVVCRQMTVASGNQLVECQECHNLYHQDCHKPQVTDKEVNDPRLVWYCARCTRQMK 74 (88)
T ss_dssp HCCSCSSSCCCCCCTTCCEEECSSSCCEEETTTSSSCCCHHHHHCTTCCCCCHHHHHHHC
T ss_pred CCCcCCCCCCCCCCCCCceEECCCCCCeEcCccCCCcccccccCCCCCCeeCccccchhh
Confidence 46789999976432 3344 4788999999987553 2346999976553
No 104
>1x62_A C-terminal LIM domain protein 1; PDZ and LIM domain protein 1, LIM domain protein CLP-36, contractIle protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=42.04 E-value=23 Score=26.77 Aligned_cols=39 Identities=15% Similarity=0.323 Sum_probs=31.2
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
....|.-|-+.........-+..||.+|+ .|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (79)
T 1x62_A 14 KLPMCDKCGTGIVGVFVKLRDRHRHPECY--------VCTDCGTNLK 52 (79)
T ss_dssp CCCCCSSSCCCCCSSCEECSSCEECTTTT--------SCSSSCCCHH
T ss_pred CCCccccCCCCccCcEEEECcceeCcCcC--------eeCCCCCCCC
Confidence 35689999998877666677889999985 6899988874
No 105
>4fo9_A E3 SUMO-protein ligase PIAS2; E3 ligase, pinit domain, SP-ring domain, structural GE consortium, SGC; 2.39A {Homo sapiens} PDB: 2asq_B
Probab=41.88 E-value=17 Score=36.50 Aligned_cols=46 Identities=20% Similarity=0.463 Sum_probs=32.3
Q ss_pred CCcccccccccccCeE-eccCcccChhhHHHHHh---c--CCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKK-LICGHLFHVHCLRSWLE---R--QHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~-l~C~H~fh~~Cl~~wl~---~--~~~CP~Cr~~~~~ 335 (512)
...|++-...+..|.+ ..|.|.-|.+ +..|+. + .-.||+|.+.+..
T Consensus 215 SL~CPlS~~ri~~P~Rg~~C~HlqCFD-l~sfL~~~~~~~~W~CPiC~k~~~~ 266 (360)
T 4fo9_A 215 SLMCPLGKMRLTIPCRAVTCTHLQCFD-AALYLQMNEKKPTWICPVCDKKAAY 266 (360)
T ss_dssp ESBCTTTCSBCSSEEEETTCCCCCCEE-HHHHHHHHHHSCCCBCTTTCSBCCG
T ss_pred eeeCCCccceeccCCcCCCCCCCccCC-HHHHHHHHhhCCCeECCCCCcccCH
Confidence 4679999999988865 4799985543 234443 2 3469999998753
No 106
>1wem_A Death associated transcription factor 1; structural genomics, PHD domain, death inducer- obliterator 1(DIO-1); NMR {Mus musculus} SCOP: g.50.1.2
Probab=41.03 E-value=6.2 Score=30.11 Aligned_cols=46 Identities=28% Similarity=0.623 Sum_probs=30.2
Q ss_pred cCCCCcccccccccccCeEe---ccCcccChhhHHHHH---------hcCCCCCCCCCc
Q 010385 286 DASDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWL---------ERQHTCPTCRAL 332 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl---------~~~~~CP~Cr~~ 332 (512)
+.....| ||.........+ .|..-||..|+.--. .....||.|+..
T Consensus 13 d~~~~~C-~C~~~~~~~~MI~Cd~C~~WfH~~Cvgl~~~~~~~l~~~~~~~~C~~C~~~ 70 (76)
T 1wem_A 13 DPNALYC-ICRQPHNNRFMICCDRCEEWFHGDCVGISEARGRLLERNGEDYICPNCTIL 70 (76)
T ss_dssp CTTCCCS-TTCCCCCSSCEEECSSSCCEEEHHHHSCCHHHHHHHHHHTCCCCCHHHHHH
T ss_pred CCCCCEE-ECCCccCCCCEEEeCCCCCcEeCeEEccchhhhhhccCCCCeEECcCCcCc
Confidence 3345567 898876544444 478889999984211 246679999754
No 107
>1wep_A PHF8; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Mus musculus} SCOP: g.50.1.2
Probab=40.61 E-value=21 Score=27.31 Aligned_cols=46 Identities=26% Similarity=0.610 Sum_probs=29.4
Q ss_pred CCCCcccccccccc-cCeEe---ccCcccChhhHHHHHh-----cCCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMT-TAKKL---ICGHLFHVHCLRSWLE-----RQHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~-~~~~l---~C~H~fh~~Cl~~wl~-----~~~~CP~Cr~~~ 333 (512)
.....| ||..... ....+ .|..-||..|+.--.. ....||.|+..-
T Consensus 10 ~~~~~C-~C~~~~d~~~~MIqCd~C~~WfH~~Cvgl~~~~~~~~~~~~C~~C~~~~ 64 (79)
T 1wep_A 10 LVPVYC-LCRQPYNVNHFMIECGLCQDWFHGSCVGIEEENAVDIDIYHCPDCEAVF 64 (79)
T ss_dssp CCCCCS-TTSCSCCSSSCEEEBTTTCCEEEHHHHTCCHHHHTTCSBBCCTTTTTTS
T ss_pred CCccEE-EcCCccCCCCceEEcCCCCCcEEeeecCcccccccCCCeEECCCccccc
Confidence 344566 8988764 23333 4778899999853211 245799997654
No 108
>2e6s_A E3 ubiquitin-protein ligase UHRF2; PHD domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=39.98 E-value=8.4 Score=29.69 Aligned_cols=42 Identities=26% Similarity=0.768 Sum_probs=28.6
Q ss_pred CcccccccccccCeEe---ccCcccChhhHHHHHhc-----CCCCCCCCC
Q 010385 290 STCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (512)
..|.+|...-.....+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 27 c~C~vC~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 76 (77)
T 2e6s_A 27 CSCRVCGGKHEPNMQLLCDECNVAYHIYCLNPPLDKVPEEEYWYCPSCKT 76 (77)
T ss_dssp SSCSSSCCCCCSTTEEECSSSCCEEETTSSSSCCSSCCCSSCCCCTTTCC
T ss_pred CCCcCcCCcCCCCCEEEcCCCCccccccccCCCccCCCCCCCcCCcCccC
Confidence 3788888654444555 47788999999864432 235998864
No 109
>3ask_A E3 ubiquitin-protein ligase UHRF1; histone reader modules, epigenetic regulation, trimethylaion of lysine residue, ligase-DNA binding protein; HET: M3L; 2.90A {Homo sapiens}
Probab=38.67 E-value=7.5 Score=36.44 Aligned_cols=41 Identities=34% Similarity=0.805 Sum_probs=24.1
Q ss_pred cccccccccccCeEe---ccCcccChhhHHHHHhc-----CCCCCCCCC
Q 010385 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (512)
.|.+|...-.....+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 176 ~C~vC~~~~~~~~lL~CD~C~~~yH~~CL~PPL~~vP~G~~W~Cp~C~~ 224 (226)
T 3ask_A 176 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 224 (226)
T ss_dssp SCSSSCCCCC--CCEECSSSCCEECSCC--CCCCSCCSSSCCCCGGGC-
T ss_pred CCcCCCCCCCCCCeEEcCCCCcceeCccCCCCcccCCCCCCCCCcCCcC
Confidence 577777643333444 47788999999864433 235999965
No 110
>1y02_A CARP2, FYVE-ring finger protein sakura; zinc-binding module, phosphoinositide binding, caspase regulation, metal binding protein; 1.80A {Homo sapiens} SCOP: a.140.2.1 g.50.1.1
Probab=38.67 E-value=2.7 Score=35.47 Aligned_cols=45 Identities=18% Similarity=0.486 Sum_probs=29.4
Q ss_pred CCCcccccccccccCeE----eccCcccChhhHHHHHhcCCCCCCCCCc
Q 010385 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWLERQHTCPTCRAL 332 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~ 332 (512)
....|..|...|..-.+ -.||.+||..|..........|-.|...
T Consensus 18 ~~~~C~~C~~~Fs~~~RkHHCR~CG~ifC~~Cs~~~~~~vRVC~~C~~~ 66 (120)
T 1y02_A 18 LEPSCKSCGAHFANTARKQTCLDCKKNFCMTCSSQVGNGPRLCLLCQRF 66 (120)
T ss_dssp --CCCTTTCCCCSSGGGCEECTTTCCEECGGGEEC----CCEEHHHHHH
T ss_pred ccCcccCcCCccccccccccCCCCCCeeCHHHhCCCCCCceECHHHHHH
Confidence 34689999998875421 2699999999976655555667777543
No 111
>2d8x_A Protein pinch; LIM domain, pinch protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=37.00 E-value=23 Score=25.84 Aligned_cols=39 Identities=21% Similarity=0.499 Sum_probs=29.7
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...|.-|-+.+.......-+..||.+|+ .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 43 (70)
T 2d8x_A 5 SSGCHQCGEFIIGRVIKAMNNSWHPECF--------RCDLCQEVLAD 43 (70)
T ss_dssp SSBCSSSCCBCCSCCEEETTEEECTTTS--------BCSSSCCBCSS
T ss_pred CCcCccCCCEecceEEEECcccccccCC--------EeCCCCCcCCC
Confidence 4579999888876555567888998885 68889888753
No 112
>2cor_A Pinch protein; LIM domain, particularly interesting NEW Cys- His protein, LIM and senescent cell antigen-like domains 1, structural genomics; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=36.92 E-value=30 Score=26.15 Aligned_cols=40 Identities=13% Similarity=0.392 Sum_probs=31.0
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
....|.-|-+.+.......-+..||.+|. .|-.|+.++..
T Consensus 14 ~~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (79)
T 2cor_A 14 GKYICQKCHAIIDEQPLIFKNDPYHPDHF--------NCANCGKELTA 53 (79)
T ss_dssp CCCBCTTTCCBCCSCCCCCSSSCCCTTTS--------BCSSSCCBCCT
T ss_pred CCCCCccCCCEecceEEEECcceeCCCCC--------EeCCCCCccCC
Confidence 34689999998885555567888998884 79999988853
No 113
>2gmg_A Hypothetical protein PF0610; winged-helix like protein with metal binding site, structura genomics, PSI, protein structure initiative; NMR {Pyrococcus furiosus} SCOP: a.4.5.82
Probab=36.84 E-value=10 Score=31.09 Aligned_cols=28 Identities=21% Similarity=0.608 Sum_probs=17.8
Q ss_pred eEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 303 KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 303 ~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
+...||+.|. .=+.....||.|+..-..
T Consensus 69 ~C~~CG~~F~-----~~~~kPsrCP~CkSe~Ie 96 (105)
T 2gmg_A 69 QCRKCGFVFK-----AEINIPSRCPKCKSEWIE 96 (105)
T ss_dssp BBTTTCCBCC-----CCSSCCSSCSSSCCCCBC
T ss_pred ChhhCcCeec-----ccCCCCCCCcCCCCCccC
Confidence 3456999982 112335679999886543
No 114
>3ql9_A Transcriptional regulator ATRX; zinc finger, transcription, lysine trimethylation, protein, histone-binding protein, transcription-structural complex; HET: M3L; 0.93A {Homo sapiens} PDB: 3qla_A* 3qlc_A 3qln_A 2jm1_A
Probab=35.93 E-value=24 Score=30.02 Aligned_cols=47 Identities=26% Similarity=0.431 Sum_probs=30.2
Q ss_pred cCCCCcccccccccccCeEeccCcccChhhHHHHH------h-----cCCCCCCCCCc
Q 010385 286 DASDSTCIICREEMTTAKKLICGHLFHVHCLRSWL------E-----RQHTCPTCRAL 332 (512)
Q Consensus 286 ~~~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl------~-----~~~~CP~Cr~~ 332 (512)
+..++.|.+|.+--+-.--=.|-..||.+|+.+-+ + ..-.|+.|+..
T Consensus 54 Dg~~~~C~vC~dGG~LlcCd~Cpr~Fc~~Cl~~~lg~~~l~~i~~~~~~W~C~~C~~~ 111 (129)
T 3ql9_A 54 DGMDEQCRWCAEGGNLICCDFCHNAFCKKCILRNLGRRELSTIMDENNQWYCYICHPE 111 (129)
T ss_dssp TSCBSSCTTTCCCSEEEECSSSSCEEEHHHHHHHTCHHHHHHHTCTTSCCCCTTTCCG
T ss_pred CCCCCcCeecCCCCeeEecCCCchhhhHHHhCCCcchhHHHHhccCCCCeEcCCcCCH
Confidence 34567899998652211111578899999999742 1 13469999643
No 115
>4gne_A Histone-lysine N-methyltransferase NSD3; zinc finger, transcription, nuclear protein, transf nuclear protein complex; 1.47A {Homo sapiens} PDB: 4gnd_A 4gnf_A 4gng_A*
Probab=35.86 E-value=25 Score=28.87 Aligned_cols=43 Identities=21% Similarity=0.570 Sum_probs=28.8
Q ss_pred CCCCcccccccccccCeEe-----ccCcccChhhHHHHHhc----CCCCCCCCCccC
Q 010385 287 ASDSTCIICREEMTTAKKL-----ICGHLFHVHCLRSWLER----QHTCPTCRALVV 334 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l-----~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~~~ 334 (512)
..++.|.+|.+. +..+ .|-..||..|+. +.. .-.||.|+..+-
T Consensus 13 ~~~~~C~~C~~~---G~ll~CD~~~Cp~~fH~~Cl~--L~~~P~g~W~Cp~c~C~~C 64 (107)
T 4gne_A 13 MHEDYCFQCGDG---GELVMCDKKDCPKAYHLLCLN--LTQPPYGKWECPWHQCDEC 64 (107)
T ss_dssp SSCSSCTTTCCC---SEEEECCSTTCCCEECTGGGT--CSSCCSSCCCCGGGBCTTT
T ss_pred CCCCCCCcCCCC---CcEeEECCCCCCcccccccCc--CCcCCCCCEECCCCCCCcC
Confidence 456789999843 3344 366789999997 543 234887766554
No 116
>1x64_A Alpha-actinin-2 associated LIM protein; LIM domain, PDZ and LIM domain 3, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.39.1.3 g.39.1.3
Probab=35.48 E-value=38 Score=26.13 Aligned_cols=40 Identities=18% Similarity=0.348 Sum_probs=31.5
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
....|.-|-+.+.......-+..||.+|+ .|-.|+..+..
T Consensus 24 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 63 (89)
T 1x64_A 24 RMPLCDKCGSGIVGAVVKARDKYRHPECF--------VCADCNLNLKQ 63 (89)
T ss_dssp SCCBCTTTCCBCCSCCEESSSCEECTTTC--------CCSSSCCCTTT
T ss_pred cCCCcccCCCEecccEEEECCceECccCC--------EecCCCCCCCC
Confidence 34679999998887555667889999884 69999888753
No 117
>2d8z_A Four and A half LIM domains 2; skeletal muscle LIM-protein 3, LIM-domain protein DRAL, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.98 E-value=28 Score=25.39 Aligned_cols=38 Identities=26% Similarity=0.678 Sum_probs=29.0
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.+.......-+..||.+|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (70)
T 2d8z_A 5 SSGCVQCKKPITTGGVTYREQPWHKECF--------VCTACRKQLS 42 (70)
T ss_dssp CCBCSSSCCBCCSSEEESSSSEEETTTS--------BCSSSCCBCT
T ss_pred CCCCcccCCeeccceEEECccccCCCCC--------ccCCCCCcCC
Confidence 3579999888876655567888998884 6888988774
No 118
>1z2q_A LM5-1; membrane protein, FYVE domain, zinc-finger; NMR {Leishmania major}
Probab=34.71 E-value=18 Score=28.12 Aligned_cols=32 Identities=25% Similarity=0.439 Sum_probs=24.2
Q ss_pred CCCcccccccccccCeE----eccCcccChhhHHHH
Q 010385 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSW 319 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~w 319 (512)
+...|.+|...|..-.+ -.||++||..|....
T Consensus 20 ~~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~~ 55 (84)
T 1z2q_A 20 DAPACNGCGCVFTTTVRRHHCRNCGYVLCGDCSRHR 55 (84)
T ss_dssp TCCBCTTTCCBCCTTSCCEECTTTCCEECTGGGCCE
T ss_pred CCCCCcCcCCccccchhcccccCCCcEEChHHhCCe
Confidence 45689999999875432 259999999997553
No 119
>2cur_A Skeletal muscle LIM-protein 1; four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=34.67 E-value=29 Score=25.19 Aligned_cols=38 Identities=24% Similarity=0.632 Sum_probs=29.0
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|.-|-+.........-+..||.+|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (69)
T 2cur_A 5 SSGCVKCNKAITSGGITYQDQPWHADCF--------VCVTCSKKLA 42 (69)
T ss_dssp CCCCSSSCCCCCTTCEEETTEEECTTTT--------BCTTTCCBCT
T ss_pred cCCCcccCCEeCcceEEECccccccCcC--------EECCCCCCCC
Confidence 3579999888776555567788998885 6889988875
No 120
>1joc_A EEA1, early endosomal autoantigen 1; FYVE domain, inositol 3-phosphate binding, membrane protein; HET: ITP; 2.20A {Homo sapiens} SCOP: g.50.1.1 h.1.21.1 PDB: 1hyi_A* 1hyj_A
Probab=34.14 E-value=17 Score=30.68 Aligned_cols=30 Identities=20% Similarity=0.664 Sum_probs=22.6
Q ss_pred CCcccccccccccCeE----eccCcccChhhHHH
Q 010385 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~ 318 (512)
...|.+|...|..-.. -.||++||..|...
T Consensus 69 ~~~C~~C~~~Fs~~~RrHHCR~CG~vfC~~Cs~~ 102 (125)
T 1joc_A 69 VQNCMACGKGFSVTVRRHHCRQCGNIFCAECSAK 102 (125)
T ss_dssp CCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCE
T ss_pred CCCCcCcCCccccccccccCCCCCeEEChHHhCC
Confidence 4579999999875432 25999999999643
No 121
>3v43_A Histone acetyltransferase KAT6A; MOZ, PHD finger, transferase-structural protein; 1.47A {Homo sapiens} PDB: 2ln0_A
Probab=33.98 E-value=38 Score=27.73 Aligned_cols=42 Identities=21% Similarity=0.505 Sum_probs=26.8
Q ss_pred CCcccccccccc-----cC-eEe---ccCcccChhhHHHH------H-hcCCCCCCCC
Q 010385 289 DSTCIICREEMT-----TA-KKL---ICGHLFHVHCLRSW------L-ERQHTCPTCR 330 (512)
Q Consensus 289 ~~~C~IC~~~~~-----~~-~~l---~C~H~fh~~Cl~~w------l-~~~~~CP~Cr 330 (512)
...|.+|...-. .+ ..+ .|+..||..|+..+ + ...-.||.|+
T Consensus 5 ~~~C~~C~~~~~~~~~g~~~~Ll~C~~C~~~~H~~Cl~~~~~~~~~~~~~~W~C~~C~ 62 (112)
T 3v43_A 5 IPICSFCLGTKEQNREKKPEELISCADCGNSGHPSCLKFSPELTVRVKALRWQCIECK 62 (112)
T ss_dssp CSSBTTTCCCTTCCTTSCCCCCEECTTTCCEECHHHHTCCHHHHHHHHTSCCCCTTTC
T ss_pred CccccccCCchhhCcCCCchhceEhhhcCCCCCCchhcCCHHHHHHhhccccccccCC
Confidence 457999987632 12 222 48999999999521 2 2344688775
No 122
>3asl_A E3 ubiquitin-protein ligase UHRF1; histone reader module, epigenetic regulation, LI binding protein complex; 1.41A {Homo sapiens} PDB: 3sou_A 3sow_A* 3sox_A 3zvy_A 2lgg_A 2lgk_A* 2lgl_A 3t6r_A 3zvz_B
Probab=33.27 E-value=12 Score=28.10 Aligned_cols=41 Identities=34% Similarity=0.805 Sum_probs=27.4
Q ss_pred cccccccccccCeEe---ccCcccChhhHHHHHhc-----CCCCCCCCC
Q 010385 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER-----QHTCPTCRA 331 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~-----~~~CP~Cr~ 331 (512)
.|.+|...-.....+ .|...||..|+.+=+.. .-.||.|+.
T Consensus 20 ~C~~C~~~~~~~~ll~CD~C~~~yH~~Cl~Ppl~~~P~g~~W~C~~C~~ 68 (70)
T 3asl_A 20 ACHLCGGRQDPDKQLMCDECDMAFHIYCLDPPLSSVPSEDEWYCPECRN 68 (70)
T ss_dssp SBTTTCCCSCGGGEEECTTTCCEEEGGGSSSCCSSCCSSSCCCCTTTSC
T ss_pred CCcCCCCcCCCCCEEEcCCCCCceecccCCCCcCCCCCCCCcCCcCccC
Confidence 566777654444555 47789999999854432 336999965
No 123
>2yw8_A RUN and FYVE domain-containing protein 1; structure genomics, structural genomics, NPPSFA; 3.00A {Homo sapiens} PDB: 2yqm_A
Probab=32.90 E-value=21 Score=27.65 Aligned_cols=30 Identities=27% Similarity=0.766 Sum_probs=23.0
Q ss_pred CCcccccccccccCeE----eccCcccChhhHHH
Q 010385 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~ 318 (512)
...|.+|...|..-.. -.||.+||..|...
T Consensus 19 ~~~C~~C~~~Fs~~~RrHHCR~CG~v~C~~Cs~~ 52 (82)
T 2yw8_A 19 ATHCRQCEKEFSISRRKHHCRNCGHIFCNTCSSN 52 (82)
T ss_dssp CCBCTTTCCBCBTTBCCEECTTTCCEECSGGGCE
T ss_pred CCcccCcCCcccCccccccCCCCCCEEChHHhCC
Confidence 4579999999875432 25999999999754
No 124
>1zbd_B Rabphilin-3A; G protein, effector, RABCDR, synaptic exocytosis, RAB protein, RAB3A; HET: GTP; 2.60A {Rattus norvegicus} SCOP: g.50.1.1
Probab=32.66 E-value=93 Score=26.43 Aligned_cols=30 Identities=20% Similarity=0.433 Sum_probs=19.2
Q ss_pred CCCCccccccccccc--Ce---EeccCcccChhhH
Q 010385 287 ASDSTCIICREEMTT--AK---KLICGHLFHVHCL 316 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~--~~---~l~C~H~fh~~Cl 316 (512)
.++..|.+|...+.- .. -..|+|.+|..|=
T Consensus 53 ~~~~~C~~C~~~~g~l~~~g~~C~~C~~~VC~~C~ 87 (134)
T 1zbd_B 53 DGVNRCILCGEQLGMLGSASVVCEDCKKNVCTKCG 87 (134)
T ss_dssp CSSSBCSSSCCBCSTTSCCEEECTTTCCEEETTSE
T ss_pred CCCccccccCCCcccccCCCCCCCCCCcccccccC
Confidence 356789999999831 11 1246676666663
No 125
>3t7l_A Zinc finger FYVE domain-containing protein 16; structural genomics consortium, SGC, lipid BIND protein, transport protein; 1.09A {Homo sapiens}
Probab=32.64 E-value=19 Score=28.40 Aligned_cols=33 Identities=24% Similarity=0.563 Sum_probs=24.4
Q ss_pred CCCcccccccccccCeE----eccCcccChhhHHHHH
Q 010385 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRSWL 320 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~wl 320 (512)
+...|.+|...|..-.+ -.||++||..|...+.
T Consensus 19 ~~~~C~~C~~~F~~~~RrhhCr~CG~v~C~~Cs~~~~ 55 (90)
T 3t7l_A 19 EAPNCMNCQVKFTFTKRRHHCRACGKVFCGVCCNRKC 55 (90)
T ss_dssp GCCBCTTTCCBCCSSSCCEECTTTCCEECGGGSCEEE
T ss_pred cCCcCcCCCCcccchhhCccccCCCCEECCcccCCee
Confidence 34679999998874432 2699999999976543
No 126
>2cu8_A Cysteine-rich protein 2; CRP2, CRIP2, ESP1 protein, zinc-binding, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=32.56 E-value=22 Score=26.52 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=29.2
Q ss_pred CCccccccccccc-CeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTT-AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~-~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.... .....-+..||.+|+ .|..|+.++.
T Consensus 9 ~~~C~~C~~~I~~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 47 (76)
T 2cu8_A 9 ASKCPKCDKTVYFAEKVSSLGKDWHKFCL--------KCERCSKTLT 47 (76)
T ss_dssp CCBCTTTCCBCCTTTEEEETTEEEETTTC--------BCSSSCCBCC
T ss_pred CCCCcCCCCEeECCeEEEECCeEeeCCCC--------CCCCCCCccC
Confidence 4679999998874 344467788998884 6999988875
No 127
>1x4u_A Zinc finger, FYVE domain containing 27 isoform B; phosphoinositide binding, zinc binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=32.44 E-value=19 Score=27.91 Aligned_cols=29 Identities=28% Similarity=0.584 Sum_probs=21.9
Q ss_pred CCCcccccccccccCeE----eccCcccChhhH
Q 010385 288 SDSTCIICREEMTTAKK----LICGHLFHVHCL 316 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl 316 (512)
+...|.+|...|..-.+ -.||.+||..|.
T Consensus 13 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs 45 (84)
T 1x4u_A 13 NFGNCTGCSATFSVLKKRRSCSNCGNSFCSRCC 45 (84)
T ss_dssp CCSSCSSSCCCCCSSSCCEECSSSCCEECTTTS
T ss_pred CCCcCcCcCCccccchhhhhhcCCCcEEChhhc
Confidence 34589999999865432 259999999994
No 128
>1nyp_A Pinch protein; LIM domain, protein recognition, cell adhesion; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3 PDB: 1u5s_B
Probab=32.39 E-value=22 Score=25.66 Aligned_cols=38 Identities=21% Similarity=0.479 Sum_probs=28.8
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.........-+..||..|. .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 42 (66)
T 1nyp_A 5 VPICGACRRPIEGRVVNAMGKQWHVEHF--------VCAKCEKPFL 42 (66)
T ss_dssp CCEETTTTEECCSCEECCTTSBEETTTC--------BCTTTCCBCS
T ss_pred CCCCcccCCEecceEEEECccccccCcC--------EECCCCCCCC
Confidence 3579999888875545566788998884 6889988875
No 129
>1wd2_A Ariadne-1 protein homolog; ring, IBR, triad, zinc finger, ligase; NMR {Homo sapiens} SCOP: g.44.1.1
Probab=32.01 E-value=13 Score=27.14 Aligned_cols=35 Identities=20% Similarity=0.436 Sum_probs=23.3
Q ss_pred CCcccccccccccCe-----Eec---cCcccChhhHHHHHhcC
Q 010385 289 DSTCIICREEMTTAK-----KLI---CGHLFHVHCLRSWLERQ 323 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~-----~l~---C~H~fh~~Cl~~wl~~~ 323 (512)
...|+-|....+... .-. |+|.||..|..+|-...
T Consensus 6 ~k~CP~C~~~Iek~~GCnhmtC~~~~C~~~FCw~C~~~~~~~~ 48 (60)
T 1wd2_A 6 TKECPKCHVTIEKDGGCNHMVCRNQNCKAEFCWVCLGPWEPHG 48 (60)
T ss_dssp CCCCTTTCCCCSSCCSCCSSSCCSSGGGSCCSSSSCSCSGGGG
T ss_pred ceECcCCCCeeEeCCCCCcEEECCCCcCCEEeeCcCCCcccCC
Confidence 346777776665431 112 88999999998887543
No 130
>1vfy_A Phosphatidylinositol-3-phosphate binding FYVE domain of protein VPS27; endosome maturation, intracellular trafficking; 1.15A {Saccharomyces cerevisiae} SCOP: g.50.1.1
Probab=31.78 E-value=23 Score=26.70 Aligned_cols=30 Identities=20% Similarity=0.598 Sum_probs=22.6
Q ss_pred CCcccccccccccCeE----eccCcccChhhHHH
Q 010385 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~ 318 (512)
+..|.+|...|..-.. -.||++||..|...
T Consensus 11 ~~~C~~C~~~F~~~~RrHHCR~CG~v~C~~Cs~~ 44 (73)
T 1vfy_A 11 SDACMICSKKFSLLNRKHHCRSCGGVFCQEHSSN 44 (73)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECGGGSCE
T ss_pred CCcccCCCCccCCccccccCCCCCEEEcccccCC
Confidence 3589999998875432 25999999999643
No 131
>1x4l_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=31.04 E-value=33 Score=25.13 Aligned_cols=38 Identities=21% Similarity=0.509 Sum_probs=28.9
Q ss_pred CCccccccccccc----CeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~----~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|.-|-+.... .....-+..||..|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (72)
T 1x4l_A 5 SSGCAGCTNPISGLGGTKYISFEERQWHNDCF--------NCKKCSLSLV 46 (72)
T ss_dssp SCSBTTTTBCCCCSSSCSCEECSSCEECTTTC--------BCSSSCCBCT
T ss_pred CCCCcCCCccccCCCCcceEEECCcccCcccC--------EeccCCCcCC
Confidence 4579999988875 334456888999885 6899988875
No 132
>2fiy_A Protein FDHE homolog; FDHE protein, structural genomics, P protein structure initiative, midwest center for structural genomics, MCSG; 2.10A {Pseudomonas aeruginosa} SCOP: e.59.1.1
Probab=30.99 E-value=14 Score=36.30 Aligned_cols=46 Identities=20% Similarity=0.347 Sum_probs=32.9
Q ss_pred CCCCcccccccccccCeEe----ccC--cccChhhHHHHHhcCCCCCCCCCc
Q 010385 287 ASDSTCIICREEMTTAKKL----ICG--HLFHVHCLRSWLERQHTCPTCRAL 332 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l----~C~--H~fh~~Cl~~wl~~~~~CP~Cr~~ 332 (512)
.....|++|-......+.. .=| |..|.-|=..|-.....||.|-..
T Consensus 180 ~~~~~CPvCGs~P~~s~l~~~g~~~G~R~l~Cs~C~t~W~~~R~~C~~Cg~~ 231 (309)
T 2fiy_A 180 ESRTLCPACGSPPMAGMIRQGGKETGLRYLSCSLCACEWHYVRIKCSHCEES 231 (309)
T ss_dssp TTCSSCTTTCCCEEEEEEEC----CCEEEEEETTTCCEEECCTTSCSSSCCC
T ss_pred ccCCCCCCCCCcCceeEEeecCCCCCcEEEEeCCCCCEEeecCcCCcCCCCC
Confidence 4567999998876544322 122 567778888898888899999664
No 133
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF- B_BOX, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: g.43.1.1
Probab=30.68 E-value=25 Score=26.15 Aligned_cols=32 Identities=31% Similarity=0.671 Sum_probs=23.3
Q ss_pred CCCCcccccccccccCeEecc-CcccChhhHHHH
Q 010385 287 ASDSTCIICREEMTTAKKLIC-GHLFHVHCLRSW 319 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~~~~l~C-~H~fh~~Cl~~w 319 (512)
++..-|.||.++ -.-+-+.| |-+||..|.++-
T Consensus 6 ee~pWC~ICneD-AtlrC~gCdgDLYC~rC~rE~ 38 (67)
T 2d8v_A 6 SGLPWCCICNED-ATLRCAGCDGDLYCARCFREG 38 (67)
T ss_dssp CCCSSCTTTCSC-CCEEETTTTSEEECSSHHHHH
T ss_pred cCCCeeEEeCCC-CeEEecCCCCceehHHHHHHH
Confidence 345679999998 33345567 789999997763
No 134
>2o35_A Hypothetical protein DUF1244; helix bundle, structural genomics, PSI-2, protein structure initiative; HET: MSE; 2.12A {Sinorhizobium meliloti} SCOP: a.293.1.1
Probab=30.44 E-value=18 Score=29.18 Aligned_cols=13 Identities=31% Similarity=0.813 Sum_probs=11.1
Q ss_pred ccChhhHHHHHhc
Q 010385 310 LFHVHCLRSWLER 322 (512)
Q Consensus 310 ~fh~~Cl~~wl~~ 322 (512)
.||..||.+|+..
T Consensus 42 GFCRNCLskWy~~ 54 (105)
T 2o35_A 42 GFCRNCLSNWYRE 54 (105)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999854
No 135
>1v6g_A Actin binding LIM protein 2; LIM domain, zinc binding domain, ablim2, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=30.37 E-value=34 Score=25.79 Aligned_cols=39 Identities=23% Similarity=0.634 Sum_probs=29.9
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...|..|-+.........-+..||..|. .|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~~ 53 (81)
T 1v6g_A 15 GTRCFSCDQFIEGEVVSALGKTYHPDCF--------VCAVCRLPFPP 53 (81)
T ss_dssp CCBCTTTCCBCCSCCEEETTEEECTTTS--------SCSSSCCCCCS
T ss_pred CCcCccccCEeccceEEECCceeCccCC--------ccccCCCCCCC
Confidence 3589999998875555567888999884 68899888753
No 136
>3fyb_A Protein of unknown function (DUF1244); hydrocar degrading, structural genomics, PSI-2; HET: PEG; 1.80A {Alcanivorax borkumensis SK2}
Probab=30.34 E-value=18 Score=29.11 Aligned_cols=13 Identities=38% Similarity=0.833 Sum_probs=11.0
Q ss_pred ccChhhHHHHHhc
Q 010385 310 LFHVHCLRSWLER 322 (512)
Q Consensus 310 ~fh~~Cl~~wl~~ 322 (512)
.||..||.+|+..
T Consensus 41 GFCRNCLskWy~~ 53 (104)
T 3fyb_A 41 DFCRNCLAKWLME 53 (104)
T ss_dssp SCCHHHHHHHHHH
T ss_pred HHHHHHHHHHHHH
Confidence 4999999999863
No 137
>1zfo_A LAsp-1; LIM domain, zinc-finger, metal-binding protein; NMR {Sus scrofa} SCOP: g.39.1.4
Probab=29.44 E-value=25 Score=21.77 Aligned_cols=27 Identities=19% Similarity=0.562 Sum_probs=17.9
Q ss_pred CcccccccccccCeEe-ccCcccChhhH
Q 010385 290 STCIICREEMTTAKKL-ICGHLFHVHCL 316 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l-~C~H~fh~~Cl 316 (512)
..|+.|-...-...++ .-|..||..|.
T Consensus 4 ~~C~~C~k~Vy~~Ek~~~~g~~~Hk~CF 31 (31)
T 1zfo_A 4 PNCARCGKIVYPTEKVNCLDKFWHKACF 31 (31)
T ss_dssp CBCSSSCSBCCGGGCCCSSSSCCCGGGC
T ss_pred CcCCccCCEEecceeEEECCeEecccCC
Confidence 4688887776555444 34677888873
No 138
>1wig_A KIAA1808 protein; LIM domain, zinc finger, metal-binding protein, structural genomics, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=29.03 E-value=33 Score=25.48 Aligned_cols=38 Identities=21% Similarity=0.445 Sum_probs=28.5
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|.-|-..+.......-+..||.+|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 42 (73)
T 1wig_A 5 SSGCDSCEKYITGRVLEAGEKHYHPSCA--------LCVRCGQMFA 42 (73)
T ss_dssp CCSCSSSCCCCSSCCBCCSSCCBCTTTS--------CCSSSCCCCC
T ss_pred cCCcccCCCEecCeeEEeCCCCCCCCcC--------EeCCCCCCCC
Confidence 3478888888776555567888998884 6888888775
No 139
>3mpx_A FYVE, rhogef and PH domain-containing protein 5; structural genomics consortium, DH domain, SGC, L binding protein; 2.80A {Homo sapiens}
Probab=28.26 E-value=12 Score=38.14 Aligned_cols=45 Identities=18% Similarity=0.427 Sum_probs=0.0
Q ss_pred CCcccccccccccCe----EeccCcccChhhHHHHHhc-------CCCCCCCCCcc
Q 010385 289 DSTCIICREEMTTAK----KLICGHLFHVHCLRSWLER-------QHTCPTCRALV 333 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~----~l~C~H~fh~~Cl~~wl~~-------~~~CP~Cr~~~ 333 (512)
...|.+|...|..-. .-.||++||..|-..+..- ...|-.|-..+
T Consensus 375 ~~~c~~c~~~f~~~~r~h~Cr~Cg~~~C~~Cs~~~~~~~~~~~~~~rvC~~C~~~l 430 (434)
T 3mpx_A 375 VMMCMNCGCDFSLTLRRHHCHACGKIVCRNCSRNKYPLKYLKDRMAKVCDGCFGEL 430 (434)
T ss_dssp --------------------------------------------------------
T ss_pred CCcCCCcCCCCCCcchhhhcccCcCEeehhhCCCeeeCCCCCCCcCEecHHHHHHH
Confidence 468999999886432 2369999999998765411 34577775544
No 140
>1x6a_A LIMK-2, LIM domain kinase 2; LIM-kinase 2, zinc finger domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=28.22 E-value=38 Score=25.46 Aligned_cols=38 Identities=21% Similarity=0.515 Sum_probs=29.5
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.+.......-+..||.+|+ .|-.|+..+.
T Consensus 15 ~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 1x6a_A 15 GEFCHGCSLLMTGPFMVAGEFKYHPECF--------ACMSCKVIIE 52 (81)
T ss_dssp SCBCTTTCCBCCSCCBCCTTCCBCTTSC--------BCTTTCCBCC
T ss_pred CCcCccCCCCcCceEEEECCceeccccC--------CccCCCCccC
Confidence 3579999988885555567888998884 6999988875
No 141
>1x68_A FHL5 protein; four-and-A-half LIM protein 5, zinc finger domain, AN actin- interacting protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=27.99 E-value=32 Score=25.59 Aligned_cols=38 Identities=21% Similarity=0.592 Sum_probs=28.9
Q ss_pred CCccccccccccc----CeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTT----AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~----~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.... .....-+..||.+|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~g~~~~~~a~~~~wH~~CF--------~C~~C~~~L~ 46 (76)
T 1x68_A 5 SSGCVACSKPISGLTGAKFICFQDSQWHSECF--------NCGKCSVSLV 46 (76)
T ss_dssp CCCCTTTCCCCCTTTTCCEEEETTEEEEGGGC--------BCTTTCCBCS
T ss_pred CCCCccCCCcccCCCCceeEEECCcccCcccC--------ChhhCCCcCC
Confidence 3579999988875 444567788999884 6889988875
No 142
>3mjh_B Early endosome antigen 1; protein-zinc finger complex, beta BETA alpha fold, beta HAIR RAB5A GTPase, EEA1, protein transport; HET: GTP; 2.03A {Homo sapiens}
Probab=27.78 E-value=6.8 Score=25.29 Aligned_cols=15 Identities=20% Similarity=0.468 Sum_probs=9.4
Q ss_pred CCcccccccccccCe
Q 010385 289 DSTCIICREEMTTAK 303 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~ 303 (512)
...|++|+.++..+.
T Consensus 5 GFiCP~C~~~l~s~~ 19 (34)
T 3mjh_B 5 GFICPQCMKSLGSAD 19 (34)
T ss_dssp EEECTTTCCEESSHH
T ss_pred ccCCcHHHHHcCCHH
Confidence 456777776665543
No 143
>2zet_C Melanophilin; complex, GTP-binding protein, GTPase, G-protein, RAB, RAB27B, effector, SLP homology domain, acetylation, lipoprotein, membrane; HET: GTP; 3.00A {Mus musculus}
Probab=27.47 E-value=1.4e+02 Score=25.93 Aligned_cols=29 Identities=17% Similarity=0.463 Sum_probs=21.1
Q ss_pred CCCcccccccccccC---e--EeccCcccChhhH
Q 010385 288 SDSTCIICREEMTTA---K--KLICGHLFHVHCL 316 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~---~--~l~C~H~fh~~Cl 316 (512)
.+..|++|...+.-. . -..|+|.+|..|=
T Consensus 67 ~~~~C~~C~~~fg~l~~~g~~C~~C~~~VC~~C~ 100 (153)
T 2zet_C 67 NETHCARCLQPYRLLLNSRRQCLECSLFVCKSCS 100 (153)
T ss_dssp GGTBCTTTCCBGGGCSSCCEECTTTCCEECGGGE
T ss_pred CCccchhhcCccccccCCCCcCCCCCchhhcccc
Confidence 467999999987422 1 2358899998885
No 144
>1wfk_A Zinc finger, FYVE domain containing 19; riken structural genomics/proteomics initiative, RSGI, structural genomics, unknown function; NMR {Mus musculus} SCOP: g.50.1.1
Probab=27.02 E-value=24 Score=27.74 Aligned_cols=31 Identities=35% Similarity=0.580 Sum_probs=23.7
Q ss_pred CCCcccccccccccCeE----eccCcccChhhHHH
Q 010385 288 SDSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~ 318 (512)
....|.+|...|..-.. -.||++||..|...
T Consensus 8 ~~~~C~~C~~~F~~~~RrHHCR~CG~vfC~~Cs~~ 42 (88)
T 1wfk_A 8 MESRCYGCAVKFTLFKKEYGCKNCGRAFCNGCLSF 42 (88)
T ss_dssp CCSBCTTTCCBCCSSSCEEECSSSCCEEETTTSCE
T ss_pred cCCCCcCcCCcccCccccccCCCCCCEEChhHcCC
Confidence 34589999999875432 26999999999755
No 145
>1wyh_A SLIM 2, skeletal muscle LIM-protein 2; structural genomics, riken structural genomics/proteomics initiative, RSGI, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.92 E-value=51 Score=23.99 Aligned_cols=39 Identities=28% Similarity=0.617 Sum_probs=28.7
Q ss_pred CCccccccccccc--CeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTT--AKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~--~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...|.-|-+.... .....-+..||..|. .|-.|+.++..
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 45 (72)
T 1wyh_A 5 SSGCSACGETVMPGSRKLEYGGQTWHEHCF--------LCSGCEQPLGS 45 (72)
T ss_dssp CCBCSSSCCBCCSSSCEECSTTCCEETTTC--------BCTTTCCBTTT
T ss_pred CCCCccCCCccccCccEEEECccccCcccC--------eECCCCCcCCC
Confidence 4579999998874 334456888998884 68889887753
No 146
>1z60_A TFIIH basal transcription factor complex P44 subunit; basic transcription factor, zinc binding protein, ring finger; NMR {Homo sapiens} SCOP: g.49.1.2
Probab=26.90 E-value=47 Score=24.13 Aligned_cols=40 Identities=28% Similarity=0.696 Sum_probs=28.0
Q ss_pred CcccccccccccCeEe---ccCcccChhhHHHHHhcCCCCCCC
Q 010385 290 STCIICREEMTTAKKL---ICGHLFHVHCLRSWLERQHTCPTC 329 (512)
Q Consensus 290 ~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~~~~CP~C 329 (512)
..|--|...+.+.... .|++.||.+|=.=--+.-..||-|
T Consensus 16 ~~C~~C~~~~~~~~~y~C~~C~~~FC~dCD~fiHe~Lh~CPgC 58 (59)
T 1z60_A 16 RFCYGCQGELKDQHVYVCAVCQNVFCVDCDVFVHDSLHSCPGC 58 (59)
T ss_dssp CEETTTTEECTTSEEECCTTTTCCBCHHHHHTTTTTSCSSSTT
T ss_pred CcccccCcccCCCccEECCccCcCcccchhHHHHhhccCCcCC
Confidence 4699999888654423 589999999932222445679988
No 147
>1dvp_A HRS, hepatocyte growth factor-regulated tyrosine kinase substrate; VHS, FYVE, zinc finger, superhelix, transferase; HET: CIT; 2.00A {Drosophila melanogaster} SCOP: a.118.9.2 g.50.1.1
Probab=26.68 E-value=23 Score=32.76 Aligned_cols=30 Identities=30% Similarity=0.668 Sum_probs=22.8
Q ss_pred CCcccccccccccCeE----eccCcccChhhHHH
Q 010385 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRS 318 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~ 318 (512)
+..|.+|...|..-.+ -.||++||..|...
T Consensus 161 ~~~C~~C~~~F~~~~rrhhCr~CG~v~C~~Cs~~ 194 (220)
T 1dvp_A 161 GRVCHRCRVEFTFTNRKHHCRNCGQVFCGQCTAK 194 (220)
T ss_dssp CSBCTTTCCBCCSSSCCEECTTTCCEECSTTSCE
T ss_pred CCccCCCCCccCCcccccccCCcCCEEChHHhCC
Confidence 5789999998874321 25999999999654
No 148
>2dlo_A Thyroid receptor-interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.38 E-value=38 Score=25.46 Aligned_cols=39 Identities=21% Similarity=0.501 Sum_probs=30.2
Q ss_pred CCCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
....|.-|-+.........-+..||..|+ +|..|+.++.
T Consensus 14 ~~~~C~~C~~~I~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 52 (81)
T 2dlo_A 14 TLEKCATCSQPILDRILRAMGKAYHPGCF--------TCVVCHRGLD 52 (81)
T ss_dssp SCCBCTTTCCBCCSCCEEETTEEECTTTC--------BCSSSCCBCT
T ss_pred CCCccccCCCeecceeEEECCccccHHhc--------CcccCCCccC
Confidence 35679999988876555567888998884 6999988875
No 149
>3zyq_A Hepatocyte growth factor-regulated tyrosine kinas substrate; signaling; 1.48A {Homo sapiens} PDB: 4avx_A*
Probab=26.30 E-value=25 Score=32.70 Aligned_cols=31 Identities=23% Similarity=0.654 Sum_probs=23.8
Q ss_pred CCcccccccccccCeE----eccCcccChhhHHHH
Q 010385 289 DSTCIICREEMTTAKK----LICGHLFHVHCLRSW 319 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~----l~C~H~fh~~Cl~~w 319 (512)
+..|.+|...|..-.+ -.||++||..|-...
T Consensus 164 ~~~C~~C~~~F~~~~RrhHCR~CG~v~C~~Cs~~~ 198 (226)
T 3zyq_A 164 AEECHRCRVQFGVMTRKHHCRACGQIFCGKCSSKY 198 (226)
T ss_dssp CSBCTTTCCBCBTTBCCEECTTTCCEECTTTCCEE
T ss_pred CCCCcCcCCCCCccccccccCCCcCEeChhhcCCc
Confidence 4689999998875432 259999999997653
No 150
>2cuq_A Four and A half LIM domains 3; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=26.20 E-value=44 Score=24.97 Aligned_cols=38 Identities=21% Similarity=0.576 Sum_probs=29.5
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.+.......-+..||..|+ .|-.|+.++.
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~ 52 (80)
T 2cuq_A 15 APRCARCSKTLTQGGVTYRDQPWHRECL--------VCTGCQTPLA 52 (80)
T ss_dssp SCCCTTTCCCCCSCCEESSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCcCCCCCCEecCcEEEECCchhhhhhC--------CcccCCCcCC
Confidence 3579999888876655567888998884 6889988874
No 151
>2yt5_A Metal-response element-binding transcription factor 2; zinc-regulated factor 1, ZIRF1, metal-response element DNA-binding protein M96; NMR {Mus musculus}
Probab=25.71 E-value=27 Score=25.49 Aligned_cols=47 Identities=26% Similarity=0.657 Sum_probs=31.5
Q ss_pred CCCCccccccccccc--CeEe---ccCcccChhhHHHHHh-------cCCCCCCCCCcc
Q 010385 287 ASDSTCIICREEMTT--AKKL---ICGHLFHVHCLRSWLE-------RQHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~~~--~~~l---~C~H~fh~~Cl~~wl~-------~~~~CP~Cr~~~ 333 (512)
..+..|.+|.+.... ...+ .|.-.||..|+.+=+. ..-.||.|+...
T Consensus 4 ~~~~~C~vC~~~~~~~~~~ll~Cd~C~~~~H~~C~~p~l~~~~~~p~~~W~C~~C~~~~ 62 (66)
T 2yt5_A 4 GSSGVCTICQEEYSEAPNEMVICDKCGQGYHQLCHTPHIDSSVIDSDEKWLCRQCVFAT 62 (66)
T ss_dssp CCCCCBSSSCCCCCBTTBCEEECSSSCCEEETTTSSSCCCHHHHHSSCCCCCHHHHHTT
T ss_pred CCCCCCCCCCCCCCCCCCCEEECCCCChHHHhhhCCCcccccccCCCCCEECCCCcCcc
Confidence 346789999976432 3444 4788899999986432 234688886543
No 152
>2co8_A NEDD9 interacting protein with calponin homology and LIM domains; zinc finger protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.51 E-value=61 Score=24.53 Aligned_cols=40 Identities=33% Similarity=0.820 Sum_probs=29.7
Q ss_pred CCCcccccccccccCe-EeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 288 SDSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~-~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
....|..|-+.+.... ...-+..||..|+ .|-.|+..+..
T Consensus 14 ~~~~C~~C~~~I~~~e~v~a~~~~wH~~CF--------~C~~C~~~L~~ 54 (82)
T 2co8_A 14 AGDLCALCGEHLYVLERLCVNGHFFHRSCF--------RCHTCEATLWP 54 (82)
T ss_dssp SSCBCSSSCCBCCTTTBCCBTTBCCBTTTC--------BCSSSCCBCCT
T ss_pred CCCCCcccCCCcccceEEEECCCeeCCCcC--------EEcCCCCCcCC
Confidence 4568999999885443 3356788999984 68899888754
No 153
>1x3h_A Leupaxin; paxillin family, protein-protein interaction, LIM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.29 E-value=42 Score=25.10 Aligned_cols=39 Identities=15% Similarity=0.397 Sum_probs=30.0
Q ss_pred CCcccccccccccCeEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTAKKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...|..|-+.+.......-+..||..|+ .|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~v~a~~~~~H~~CF--------~C~~C~~~L~~ 53 (80)
T 1x3h_A 15 SPKCGGCNRPVLENYLSAMDTVWHPECF--------VCGDCFTSFST 53 (80)
T ss_dssp SCBCTTTCCBCCSSCEEETTEEECTTTC--------BCSSSCCBSCS
T ss_pred CCccccCCCeecceeEEECCCeEecCcC--------ChhhCCCCCCC
Confidence 3579999888876555567788998884 69999888853
No 154
>2l43_A N-teminal domain from histone H3.3, linker, PHD1 from bromodomain-containing protein...; PHD finger, histone CODE, transcription; NMR {Homo sapiens}
Probab=25.23 E-value=50 Score=25.84 Aligned_cols=47 Identities=26% Similarity=0.499 Sum_probs=31.1
Q ss_pred CCCCccccccccc--ccCeEe---ccCcccChhhHHHHH--hcCCCCCCCCCcc
Q 010385 287 ASDSTCIICREEM--TTAKKL---ICGHLFHVHCLRSWL--ERQHTCPTCRALV 333 (512)
Q Consensus 287 ~~~~~C~IC~~~~--~~~~~l---~C~H~fh~~Cl~~wl--~~~~~CP~Cr~~~ 333 (512)
..+..|.||.+.- .....+ .|.-.||..|+..-. ...-.||.|+...
T Consensus 23 ~~~~~C~vC~~~~s~~~~~ll~CD~C~~~fH~~Cl~p~~vP~g~W~C~~C~~~~ 76 (88)
T 2l43_A 23 DEDAVCSICMDGESQNSNVILFCDMCNLAVHQECYGVPYIPEGQWLCRHCLQSR 76 (88)
T ss_dssp CCCCCCSSCCSSSSCSEEEEEECSSSCCCCCHHHHTCSSCCSSCCCCHHHHHHT
T ss_pred CCCCcCCcCCCCCCCCCCCEEECCCCCchhhcccCCCCccCCCceECccccCcc
Confidence 4567999999764 223344 477789999997532 1234588886544
No 155
>1x4k_A Skeletal muscle LIM-protein 3; LIM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=25.10 E-value=41 Score=24.54 Aligned_cols=38 Identities=24% Similarity=0.587 Sum_probs=28.1
Q ss_pred CCcccccccccccC--eEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTA--KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~--~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.+... ....-+..||..|+ .|-.|+.++.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x4k_A 5 SSGCQECKKTIMPGTRKMEYKGSSWHETCF--------ICHRCQQPIG 44 (72)
T ss_dssp CCCBSSSCCCCCSSSCEEEETTEEEETTTT--------CCSSSCCCCC
T ss_pred CCCCccCCCcccCCceEEEECcCeecccCC--------cccccCCccC
Confidence 35799999888753 34456788898884 6888988774
No 156
>1wew_A DNA-binding family protein; structural genomics, PHD domain, riken structural genomics/proteomics initiative, RSGI, DNA binding protein; NMR {Arabidopsis thaliana} SCOP: g.50.1.2
Probab=24.84 E-value=17 Score=27.80 Aligned_cols=45 Identities=22% Similarity=0.469 Sum_probs=28.9
Q ss_pred CCCcccccccccccCeEe-----ccCcccChhhHHHHHh---------cCCCCCCCCCcc
Q 010385 288 SDSTCIICREEMTTAKKL-----ICGHLFHVHCLRSWLE---------RQHTCPTCRALV 333 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l-----~C~H~fh~~Cl~~wl~---------~~~~CP~Cr~~~ 333 (512)
....| ||.........+ .|..-||..|+.---. ....||.|+..-
T Consensus 15 ~~~~C-iC~~~~~~g~MI~CD~~~C~~W~H~~CVgi~~~~~~~~~~~~~~~~C~~C~~~~ 73 (78)
T 1wew_A 15 IKVRC-VCGNSLETDSMIQCEDPRCHVWQHVGCVILPDKPMDGNPPLPESFYCEICRLTS 73 (78)
T ss_dssp CCCCC-SSCCCCCCSCEEECSSTTTCCEEEHHHHSCCCTTTCSCSCSCSSCCCHHHHHCC
T ss_pred CCEEe-ECCCcCCCCCEEEECCccCCccccCEEEccccccccccccCCCCEECCCCCccc
Confidence 45667 798874444443 4778899999853111 245699997643
No 157
>1x63_A Skeletal muscle LIM-protein 1; LIM domain, four and A half LIM domains protein 1, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=24.17 E-value=49 Score=24.85 Aligned_cols=39 Identities=21% Similarity=0.618 Sum_probs=29.0
Q ss_pred CCcccccccccccC--eEeccCcccChhhHHHHHhcCCCCCCCCCccCC
Q 010385 289 DSTCIICREEMTTA--KKLICGHLFHVHCLRSWLERQHTCPTCRALVVP 335 (512)
Q Consensus 289 ~~~C~IC~~~~~~~--~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~~ 335 (512)
...|..|-+.+... ....-+..||.+|+ .|-.|+.++..
T Consensus 15 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~~ 55 (82)
T 1x63_A 15 SPKCKGCFKAIVAGDQNVEYKGTVWHKDCF--------TCSNCKQVIGT 55 (82)
T ss_dssp SCBCSSSCCBCCSSSCEEECSSCEEETTTC--------CCSSSCCCCTT
T ss_pred CCcCccCCcccccCceEEEECccccccccC--------chhhCCCccCC
Confidence 45899999988743 34456788998884 68899888753
No 158
>2ri7_A Nucleosome-remodeling factor subunit BPTF; zinc finger, alpha-helical bundle, dimethyl-lysine, bromodom chromatin regulator, metal-binding, nucleus; HET: MLY; 1.45A {Homo sapiens} PDB: 2fsa_A* 2f6n_A 2f6j_A* 3qzv_A* 3uv2_A* 3qzt_A* 3qzs_A* 2fui_A 2fuu_A*
Probab=24.16 E-value=8.3 Score=34.32 Aligned_cols=44 Identities=20% Similarity=0.585 Sum_probs=29.0
Q ss_pred CCCcccccccccccC-eEe---ccCcccChhhHHHHH-----hcCCCCCCCCCc
Q 010385 288 SDSTCIICREEMTTA-KKL---ICGHLFHVHCLRSWL-----ERQHTCPTCRAL 332 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~-~~l---~C~H~fh~~Cl~~wl-----~~~~~CP~Cr~~ 332 (512)
.+..| +|....... ..+ .|...||..|+.--. ...-.||.|+..
T Consensus 7 ~~~~C-~C~~~~~~~~~mi~Cd~C~~WfH~~Cv~~~~~~~~~~~~~~C~~C~~~ 59 (174)
T 2ri7_A 7 TKLYC-ICKTPEDESKFYIGCDRCQNWYHGRCVGILQSEAELIDEYVCPQCQST 59 (174)
T ss_dssp CCEET-TTTEECCTTSCEEECTTTCCEEEHHHHTCCHHHHTTCSSCCCHHHHHH
T ss_pred CCcEe-eCCCCCCCCCCEeECCCCCchhChhhcCCchhhccCccCeecCCCcch
Confidence 45678 998876432 233 477889999985321 124579999764
No 159
>2kwj_A Zinc finger protein DPF3; acetyl-lysine, transcription regulation, nucleus, metal BIND protein; HET: ALY; NMR {Homo sapiens} PDB: 2kwk_A 2kwn_A* 2kwo_A*
Probab=24.07 E-value=35 Score=28.09 Aligned_cols=30 Identities=27% Similarity=0.430 Sum_probs=20.7
Q ss_pred Cccccccccccc------C-eEe---ccCcccChhhHHHH
Q 010385 290 STCIICREEMTT------A-KKL---ICGHLFHVHCLRSW 319 (512)
Q Consensus 290 ~~C~IC~~~~~~------~-~~l---~C~H~fh~~Cl~~w 319 (512)
+.|.+|...-.. + ..+ .|+..||..|+...
T Consensus 2 ~~C~~C~~~~~~n~k~g~~~~Li~C~~C~~~~H~~Cl~~~ 41 (114)
T 2kwj_A 2 SYCDFCLGGSNMNKKSGRPEELVSCADCGRSGHPTCLQFT 41 (114)
T ss_dssp CCCSSSCCBTTBCTTTCCCCCCEECSSSCCEECTTTTTCC
T ss_pred CcCccCCCCccccccCCCCCCCeEeCCCCCccchhhCCCh
Confidence 469999876421 1 222 48899999999754
No 160
>1x61_A Thyroid receptor interacting protein 6; LIM domain, OPA-interacting protein 1, zyxin related protein 1 (ZRP-1), structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.93 E-value=62 Score=23.50 Aligned_cols=38 Identities=37% Similarity=0.725 Sum_probs=27.5
Q ss_pred CCccccccccccc--CeEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTT--AKKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~--~~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|..|-+.... .....-+..||..|+ .|-.|+..+.
T Consensus 5 ~~~C~~C~~~I~~~~~~~~a~~~~~H~~CF--------~C~~C~~~L~ 44 (72)
T 1x61_A 5 SSGCGGCGEDVVGDGAGVVALDRVFHVGCF--------VCSTCRAQLR 44 (72)
T ss_dssp CCCCSSSCSCCCSSSCCEECSSSEECTTTC--------BCSSSCCBCT
T ss_pred CCCCccCCCccCCCceEEEECCCeEcccCC--------cccccCCcCC
Confidence 4578888887764 244466788898884 6888888774
No 161
>2dj7_A Actin-binding LIM protein 3; LIM domain, Zn binding protein, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: g.39.1.3 g.39.1.3
Probab=23.92 E-value=57 Score=24.66 Aligned_cols=39 Identities=31% Similarity=0.744 Sum_probs=29.5
Q ss_pred CCCcccccccccccC-eEeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 288 SDSTCIICREEMTTA-KKLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~-~~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
....|.-|-+.+... ....-+..||.+|+ .|-.|+..+.
T Consensus 14 ~~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 53 (80)
T 2dj7_A 14 GPSHCAGCKEEIKHGQSLLALDKQWHVSCF--------KCQTCSVILT 53 (80)
T ss_dssp SCSCCTTTCCCCSSSCCEEETTEEECTTTC--------BCSSSCCBCS
T ss_pred CCCCCcCcCCeeCCCeEEEECCcccccccC--------CcCcCCCCcC
Confidence 456899999988644 34456788999884 6999988774
No 162
>2ysm_A Myeloid/lymphoid or mixed-lineage leukemia protein 3 homolog; PHD domain, histone-lysine N-methyltransferase, H3 lysine-4 specific MLL3; NMR {Homo sapiens}
Probab=23.46 E-value=13 Score=30.52 Aligned_cols=42 Identities=26% Similarity=0.687 Sum_probs=27.9
Q ss_pred cccccccccccCeEe---ccCcccChhhHHHHHhc----CCCCCCCCCc
Q 010385 291 TCIICREEMTTAKKL---ICGHLFHVHCLRSWLER----QHTCPTCRAL 332 (512)
Q Consensus 291 ~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~~----~~~CP~Cr~~ 332 (512)
.|.+|.+.-.+...+ .|...||..|+.+=+.. .-.||.|+.-
T Consensus 56 ~C~~C~~~~~~~~ll~Cd~C~~~yH~~Cl~ppl~~~P~g~W~C~~C~~c 104 (111)
T 2ysm_A 56 VCQNCKQSGEDSKMLVCDTCDKGYHTFCLQPVMKSVPTNGWKCKNCRIC 104 (111)
T ss_dssp CCTTTCCCSCCTTEEECSSSCCEEEGGGSSSCCSSCCSSCCCCHHHHCC
T ss_pred cccccCccCCCCCeeECCCCCcHHhHHhcCCccccCCCCCcCCcCCcCc
Confidence 567777665544555 47788999999864433 3358888543
No 163
>2kgg_A Histone demethylase jarid1A; PHD finger, histone modification, leukemia, alternative splicing, chromatin regulator, developmental protein; NMR {Homo sapiens} PDB: 2kgi_A* 3gl6_A*
Probab=23.38 E-value=22 Score=24.85 Aligned_cols=40 Identities=18% Similarity=0.388 Sum_probs=24.9
Q ss_pred cccccccccccCe-Ee----ccCcccChhhHHHHH----hcCCCCCCCC
Q 010385 291 TCIICREEMTTAK-KL----ICGHLFHVHCLRSWL----ERQHTCPTCR 330 (512)
Q Consensus 291 ~C~IC~~~~~~~~-~l----~C~H~fh~~Cl~~wl----~~~~~CP~Cr 330 (512)
.|.+|.....+.. .+ .|..-||..|+.--. .....||.|+
T Consensus 4 ~cc~C~~p~~~~~~mI~Cd~~C~~WfH~~Cvgl~~~~~~~~~~~C~~C~ 52 (52)
T 2kgg_A 4 AAQNCQRPCKDKVDWVQCDGGCDEWFHQVCVGVSPEMAENEDYICINCA 52 (52)
T ss_dssp SCTTCCCCCCTTCCEEECTTTTCCEEETTTTTCCHHHHHHSCCCCSCC-
T ss_pred cCCCCcCccCCCCcEEEeCCCCCccCcccccCCCccccCCCCEECCCCC
Confidence 4678877765432 22 466779999975321 2456799985
No 164
>2l4z_A DNA endonuclease RBBP8, LIM domain transcription LMO4; protein-protein interaction, LIM-interaction DOM LMO4, RBBP8/CTIP, LIM-only protein; HET: DNA; NMR {Homo sapiens}
Probab=22.26 E-value=34 Score=28.51 Aligned_cols=38 Identities=21% Similarity=0.506 Sum_probs=30.2
Q ss_pred CCcccccccccccCe-EeccCcccChhhHHHHHhcCCCCCCCCCccC
Q 010385 289 DSTCIICREEMTTAK-KLICGHLFHVHCLRSWLERQHTCPTCRALVV 334 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~-~l~C~H~fh~~Cl~~wl~~~~~CP~Cr~~~~ 334 (512)
...|.-|-+...... ...-+..||..|+ .|-.|+..+.
T Consensus 61 ~~~C~~C~~~I~~~~~v~a~~~~wH~~CF--------~C~~C~~~L~ 99 (123)
T 2l4z_A 61 WKRCAGCGGKIADRFLLYAMDSYWHSRCL--------KCSSCQAQLG 99 (123)
T ss_dssp CSBBSSSSSBCCSSSEEEETTEEEETTTS--------BCTTTCCBGG
T ss_pred CCcCcCCCCCcCCcEEEEeCCcEEccccc--------CcCcCCCccc
Confidence 357999999887664 4567888999984 6999998885
No 165
>3o70_A PHD finger protein 13; PHF13, structural genomics consortium, SGC, structural genom type zinc finger, protein binding, zinc ION binding; 1.85A {Homo sapiens}
Probab=22.02 E-value=13 Score=27.80 Aligned_cols=43 Identities=21% Similarity=0.551 Sum_probs=27.3
Q ss_pred CCCcccccccccccCeEe---ccCcccChhhHHHHHh---cCCCCCCCCC
Q 010385 288 SDSTCIICREEMTTAKKL---ICGHLFHVHCLRSWLE---RQHTCPTCRA 331 (512)
Q Consensus 288 ~~~~C~IC~~~~~~~~~l---~C~H~fh~~Cl~~wl~---~~~~CP~Cr~ 331 (512)
+...| ||.........+ .|..-||..|+.---. ....||.|+.
T Consensus 18 ~~~~C-iC~~~~~~~~MIqCd~C~~WfH~~Cvgi~~~~~~~~~~C~~C~~ 66 (68)
T 3o70_A 18 GLVTC-FCMKPFAGRPMIECNECHTWIHLSCAKIRKSNVPEVFVCQKCRD 66 (68)
T ss_dssp TCCCS-TTCCCCTTCCEEECTTTCCEEETTTTTCCTTSCCSSCCCHHHHT
T ss_pred CceEe-ECCCcCCCCCEEECCCCCccccccccCcCcccCCCcEECCCCCC
Confidence 45567 998776543344 3778899999854221 2345888754
No 166
>1iml_A CRIP, cysteine rich intestinal protein; metal-binding protein, LIM domain protein; NMR {Rattus rattus} SCOP: g.39.1.3 g.39.1.3
Probab=20.61 E-value=56 Score=24.14 Aligned_cols=11 Identities=27% Similarity=0.655 Sum_probs=5.0
Q ss_pred Ccccccccccc
Q 010385 290 STCIICREEMT 300 (512)
Q Consensus 290 ~~C~IC~~~~~ 300 (512)
..|..|...+.
T Consensus 28 F~C~~C~~~L~ 38 (76)
T 1iml_A 28 LKCEKCGKTLT 38 (76)
T ss_dssp CBCTTTCCBCC
T ss_pred CCccccCccCC
Confidence 44444444443
No 167
>2vnf_A ING 4, P29ING4, inhibitor of growth protein 4; acetylation, alternative splicing, anti-oncogene, cell cycle, coiled C nucleus, zinc, zinc-finger, ING4; HET: M3L; 1.76A {Homo sapiens} SCOP: g.50.1.2 PDB: 2k1j_A 2jmq_A 2qic_A*
Probab=20.38 E-value=17 Score=26.40 Aligned_cols=39 Identities=26% Similarity=0.759 Sum_probs=25.1
Q ss_pred CCcccccccccccCeEec-----cC-cccChhhHHHHHhc----CCCCCCCCC
Q 010385 289 DSTCIICREEMTTAKKLI-----CG-HLFHVHCLRSWLER----QHTCPTCRA 331 (512)
Q Consensus 289 ~~~C~IC~~~~~~~~~l~-----C~-H~fh~~Cl~~wl~~----~~~CP~Cr~ 331 (512)
...| ||..... ...+- |. ..||..|+. +.. .-.||.|+.
T Consensus 10 ~~~C-~C~~~~~-g~mi~CD~cdC~~~wfH~~Cvg--l~~~p~g~w~C~~C~~ 58 (60)
T 2vnf_A 10 PTYC-LCHQVSY-GEMIGCDNPDCSIEWFHFACVG--LTTKPRGKWFCPRCSQ 58 (60)
T ss_dssp CEET-TTTEECC-SEEEECSCTTCSSCEEETGGGT--CSSCCSSCCCCHHHHC
T ss_pred CCEE-ECCCcCC-CCEEEeCCCCCCCceEehhcCC--CCcCCCCCEECcCccC
Confidence 4456 8988643 44554 54 579999997 433 335888854
Done!