BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= 010390
(512 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3EMH|A Chain A, Structural Basis Of Wdr5-Mll Interaction
Length = 318
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 127
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 128 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 160
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 161 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 206
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 207 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 264 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 314
>pdb|2XL2|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL2|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide Recruited To Novel
Site
pdb|2XL3|A Chain A, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
pdb|2XL3|B Chain B, Wdr5 In Complex With An Rbbp5 Peptide And Histone H3
Peptide
Length = 334
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 85 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 143
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 144 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 176
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 177 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 222
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 223 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 279
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 280 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 330
>pdb|2GNQ|A Chain A, Structure Of Wdr5
Length = 336
Score = 70.9 bits (172), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 87 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 145
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 146 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 178
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 179 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 224
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 225 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 281
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 282 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 332
>pdb|2H9L|A Chain A, Wdr5delta23
pdb|2H9P|A Chain A, Wdr5 In Complex With Trimethylated H3k4 Peptide
Length = 329
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 80 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 138
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 139 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 171
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 172 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 217
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 218 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 274
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 275 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 325
>pdb|2H68|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H68|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6K|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6N|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|A Chain A, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|2H6Q|B Chain B, Histone H3 Recognition And Presentation By The Wdr5 Module
Of The Mll1 Complex
pdb|3EG6|A Chain A, Structure Of Wdr5 Bound To Mll1 Peptide
pdb|4ERQ|A Chain A, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|B Chain B, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERQ|C Chain C, X-Ray Structure Of Wdr5-Mll2 Win Motif Peptide Binary
Complex
pdb|4ERY|A Chain A, X-Ray Structure Of Wdr5-Mll3 Win Motif Peptide Binary
Complex
pdb|4ERZ|A Chain A, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|B Chain B, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ERZ|C Chain C, X-Ray Structure Of Wdr5-Mll4 Win Motif Peptide Binary
Complex
pdb|4ES0|A Chain A, X-Ray Structure Of Wdr5-Setd1b Win Motif Peptide Binary
Complex
pdb|4ESG|A Chain A, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4ESG|B Chain B, X-Ray Structure Of Wdr5-Mll1 Win Motif Peptide Binary
Complex
pdb|4EWR|A Chain A, X-Ray Structure Of Wdr5-Setd1a Win Motif Peptide Binary
Complex
Length = 312
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 122 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 154
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 155 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 200
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 201 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 258 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 308
>pdb|3SMR|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|C Chain C, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3SMR|D Chain D, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|3UR4|B Chain B, Crystal Structure Of Human Wd Repeat Domain 5 With
Compound
pdb|4IA9|A Chain A, Crystal Structure Of Human Wd Repeat Domain 5 In Complex
With 2-
Chloro-4-Fluoro-3-Methyl-N-[2-(4-Methylpiperazin-1-Yl)-
5- Nitrophenyl]benzamide
Length = 312
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 63 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 122 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 154
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 155 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 200
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 201 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 257
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 258 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 308
>pdb|2G99|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
pdb|2G99|B Chain B, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 308
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 59 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 117
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 118 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 150
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 151 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 196
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 197 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 253
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 254 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 304
>pdb|2H9M|A Chain A, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9M|C Chain C, Wdr5 In Complex With Unmodified H3k4 Peptide
pdb|2H9N|A Chain A, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2H9N|C Chain C, Wdr5 In Complex With Monomethylated H3k4 Peptide
pdb|2O9K|A Chain A, Wdr5 In Complex With Dimethylated H3k4 Peptide
pdb|2O9K|C Chain C, Wdr5 In Complex With Dimethylated H3k4 Peptide
Length = 313
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 64 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 122
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 123 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 155
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 156 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 201
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 202 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 258
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 259 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 309
>pdb|2G9A|A Chain A, Structural Basis For The Specific Recognition Of
Methylated Histone H3 Lysine 4 By The Wd-40 Protein Wdr5
Length = 311
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 62 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 120
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 121 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 153
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 154 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 199
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 200 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 256
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 257 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 307
>pdb|4A7J|A Chain A, Symmetric Dimethylation Of H3 Arginine 2 Is A Novel
Histone Mark That Supports Euchromatin Maintenance
Length = 318
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 127
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 128 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 160
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 161 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 206
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 207 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 264 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 314
>pdb|3PSL|A Chain A, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3PSL|B Chain B, Fine-Tuning The Stimulation Of Mll1 Methyltransferase
Activity By A Histone H3 Based Peptide Mimetic
pdb|3UVK|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll2
pdb|3UVL|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll3
pdb|3UVM|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Mll4
pdb|3UVN|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVN|C Chain C, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1a
pdb|3UVO|A Chain A, Crystal Structure Of Wdr5 In Complex With The
Wdr5-Interacting Motif Of Set1b
Length = 318
Score = 70.1 bits (170), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 69 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 127
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 128 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 160
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 161 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 206
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 207 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 263
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 264 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 314
>pdb|2H13|A Chain A, Crystal Structure Of Wdr5HISTONE H3 COMPLEX
pdb|2H14|A Chain A, Crystal Of Wdr5 (Apo-Form)
pdb|3P4F|A Chain A, Structural And Biochemical Insights Into Mll1 Core Complex
Assembly And Regulation
Length = 317
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 68 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 126
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 127 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 159
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 160 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 205
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 206 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 262
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 263 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 313
>pdb|3MXX|A Chain A, Crystal Structure Of Wdr5 Mutant (S62a)
Length = 315
Score = 70.1 bits (170), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 71/294 (24%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 125 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 157
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 158 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 261 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 311
>pdb|2CNX|A Chain A, Wdr5 And Histone H3 Lysine 4 Dimethyl Complex At 2.1
Angstrom
pdb|2CO0|C Chain C, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ C ++ S V H
Sbjct: 125 IVSGSFDESVRIWDVK-----TGMCLKTLPAHSDPVSAVH-------------------- 159
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
+ S+ +S+ + + + WDT + LK I P +S +
Sbjct: 160 ---FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 261 DNMVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 311
>pdb|2CO0|A Chain A, Wdr5 And Unmodified Histone H3 Complex At 2.25 Angstrom
Length = 315
Score = 69.7 bits (169), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 125/294 (42%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ C ++ S V H
Sbjct: 125 IVSGSFDESVRIWDVK-----TGMCLKTLPAHSDPVSAVH-------------------- 159
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
+ S+ +S+ + + + WDT + LK I P +S +
Sbjct: 160 ---FNRDGSLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 204 SPNGKYILAATLDNDLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++LW
Sbjct: 261 DNMVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLW 311
>pdb|3N0E|A Chain A, Crystal Structure Of Wdr5 Mutant (W330y)
Length = 315
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 70/294 (23%), Positives = 129/294 (43%), Gaps = 56/294 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 125 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 157
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 158 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLW 391
D Y+W + + KL+ H V + P E I+ S+ +D T++L+
Sbjct: 261 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKLY 311
>pdb|3N0D|A Chain A, Crystal Structure Of Wdr5 Mutant (W330f)
Length = 315
Score = 66.6 bits (161), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 70/293 (23%), Positives = 128/293 (43%), Gaps = 56/293 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ I D+ W + +++AS D+T+KIWD KC L GH+ + C+ S++
Sbjct: 66 GHKLGISDVAWSSDSNLLVSASDDKTLKIWDVSSGKCLKTLKGHSNYV-FCCNFNPQSNL 124
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+VSGS D S IWD++ K + A S +++
Sbjct: 125 IVSGSFDESVRIWDVK---------------------------TGKCLKTLPAHSDPVSA 157
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRN---LKAQITQAWPHAESSSAKETRLHGISSLSQ 282
V + +D S+ +S+ + + + WDT + LK I P +S +
Sbjct: 158 VHFNRDG-SLIVSSSYDGLCRIWDTASGQCLKTLIDDDNPP-------------VSFVKF 203
Query: 283 DSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESFYVKSEI-CPNASHILSGSS 340
NG ++ A+ +D+ + L++ KG ++ ++G + E + + + I+SGS
Sbjct: 204 SPNGKYILAATLDNTLKLWD---YSKGKCLKTYTGHKNEKYCIFANFSVTGGKWIVSGSE 260
Query: 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRL 390
D Y+W + + KL+ H V + P E I+ S+ +D T++L
Sbjct: 261 DNLVYIWNLQTKEIVQ-KLQGHTDVVISTACHPTE--NIIASAALENDKTIKL 310
>pdb|2OVP|B Chain B, Structure Of The Skp1-Fbw7 Complex
pdb|2OVQ|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegc Complex
pdb|2OVR|B Chain B, Structure Of The Skp1-Fbw7-Cyclinedegn Complex
Length = 445
Score = 63.5 bits (153), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 64/278 (23%), Positives = 124/278 (44%), Gaps = 25/278 (8%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182
I++ S D T+K+W A KC L+GHTG + S +I++SGS D + +W+
Sbjct: 132 IVSGSDDNTLKVWSAVTGKCLRTLVGHTGGV---WSSQMRDNIIISGSTDRTLKVWN--- 185
Query: 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAV 241
+ C + ++ V+ HL + + VS + A++ + + + V + +AV
Sbjct: 186 --AETGECIHTLYGHTSTVRCMHL-HEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAV 242
Query: 242 NSIVKFWDTRNLKAQ----ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR 297
+ +D R + + + + W + + H S +G+ + + +D
Sbjct: 243 RCVQ--YDGRRVVSGAYDFMVKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTS 300
Query: 298 IYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356
I +++V + G H +G +S E+ N ++SG++D +W + Q
Sbjct: 301 IRVWDV---ETGNCIHTLTG--HQSLTSGMELKDNI--LVSGNADSTVKIWDIKTGQCLQ 353
Query: 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394
L+ + +AV ++TSSDD TV+LW L+
Sbjct: 354 -TLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLWDLK 390
Score = 52.0 bits (123), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 40/167 (23%), Positives = 71/167 (42%), Gaps = 17/167 (10%)
Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
C + +++ S D T+++WD E +C LMGH +++ + + +VSG+ D
Sbjct: 204 CMHLHEKRVVSGSRDATLRVWDIETGQCLHVLMGHVAAVRCV---QYDGRRVVSGAYDFM 260
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR------------KAASMS 222
+WD ++ + + S G H++S S S R S
Sbjct: 261 VKVWDPETETCLHTLQGHTNRVYSLQFDGIHVVSGSLDTSIRVWDVETGNCIHTLTGHQS 320
Query: 223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269
+TS + LKD +I + +S VK WD + + T P+ S+
Sbjct: 321 LTSGMELKD--NILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAV 365
Score = 40.4 bits (93), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 34/63 (53%)
Query: 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178
+D +++ + D T+KIWD + +C L G ++ N + +++ S DG+ +W
Sbjct: 328 KDNILVSGNADSTVKIWDIKTGQCLQTLQGPNKHQSAVTCLQFNKNFVITSSDDGTVKLW 387
Query: 179 DLR 181
DL+
Sbjct: 388 DLK 390
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 24/38 (63%), Gaps = 4/38 (10%)
Query: 356 PIKLKSHDGEV-TAVNWCPNEAGKIVTSSDDYTVRLWS 392
P LK HD V T + +C N +IV+ SDD T+++WS
Sbjct: 111 PKVLKGHDDHVITCLQFCGN---RIVSGSDDNTLKVWS 145
>pdb|1ERJ|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|B Chain B, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
pdb|1ERJ|C Chain C, Crystal Structure Of The C-Terminal Wd40 Domain Of Tup1
Length = 393
Score = 60.5 bits (145), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 67/271 (24%), Positives = 111/271 (40%), Gaps = 37/271 (13%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
I +C+ + + T + D+ I+IWD E +K L GH I SL P+ D LVSGS
Sbjct: 126 IRSVCFSPDGKFLATGAEDRLIRIWDIENRKIVMILQGHEQDIYSLDYFPS-GDKLVSGS 184
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG------AHLLSQSKRVSRRKAASM--- 221
D + IWDLR + E V + AV G A L ++ RV + +
Sbjct: 185 GDRTVRIWDLRTGQCSLTLSIEDGVTTVAVSPGDGKYIAAGSLDRAVRVWDSETGFLVER 244
Query: 222 -------------SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS 268
S+ SV++ +D S+ + S ++ VK W+ +N + P+ S
Sbjct: 245 LDSENESGTGHKDSVYSVVFTRDGQSVVSGS-LDRSVKLWNLQNANNKSDSKTPN---SG 300
Query: 269 AKETRLHG----ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYV 324
E G + S++ N ++ + D + ++ + P+ G R V
Sbjct: 301 TCEVTYIGHKDFVLSVATTQNDEYILSGSKDRGVLFWD--KKSGNPLLMLQGHRNSVISV 358
Query: 325 K----SEICPNASHILSGSSDGNAYVWQVNK 351
S + P + +GS D A +W+ K
Sbjct: 359 AVANGSSLGPEYNVFATGSGDCKARIWKYKK 389
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 42/74 (56%), Gaps = 5/74 (6%)
Query: 322 FYVKSEIC--PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI 379
Y++S +C P+ + +G+ D +W + + I L+ H+ ++ ++++ P+ K+
Sbjct: 124 LYIRS-VCFSPDGKFLATGAEDRLIRIWDIENRKIVMI-LQGHEQDIYSLDYFPS-GDKL 180
Query: 380 VTSSDDYTVRLWSL 393
V+ S D TVR+W L
Sbjct: 181 VSGSGDRTVRIWDL 194
Score = 33.5 bits (75), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 32/129 (24%), Positives = 57/129 (44%), Gaps = 7/129 (5%)
Query: 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVK 325
+SS+ + L+ I S+ +G FL D I ++++ ++ + G + + +
Sbjct: 116 TSSSPSSDLY-IRSVCFSPDGKFLATGAEDRLIRIWDIE--NRKIVMILQGHEQDIYSL- 171
Query: 326 SEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385
+ P+ ++SGS D +W + Q + L DG VT V P + I S D
Sbjct: 172 -DYFPSGDKLVSGSGDRTVRIWDLRTGQC-SLTLSIEDG-VTTVAVSPGDGKYIAAGSLD 228
Query: 386 YTVRLWSLE 394
VR+W E
Sbjct: 229 RAVRVWDSE 237
>pdb|2YNP|A Chain A, Yeast Betaprime Cop 1-604 With Ktktn Motif
Length = 604
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
++TAS D TIKIWD + K C L GH ++ HPT I++SGS DG+ IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Score = 33.1 bits (74), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 323 YVKS-EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381
Y++S + P ++LSGS D +W A + H+ V V + P + +
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 382 SSDDYTVRLWSL 393
D TV++WSL
Sbjct: 159 GCLDRTVKVWSL 170
Score = 32.3 bits (72), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLC--SHPTNSDILVSGSRDGSFAIWDL 180
I++ S D T+KIW++ K L + G +S C +HPT ++ D F + L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 181 -------------RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR 216
+ S N A S +F +AV++G + Q + +S +
Sbjct: 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIF-TAVIRGNEEVEQDEPLSLQ 348
Score = 32.0 bits (71), Expect = 0.77, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCS 158
++ D+ AH + I + +L+ S D T+K+W+ E GH + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 159 HPTNSDILVSGSRDGSFAIWDLRCKSSP 186
+P + SG D + +W L +S+P
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL-GQSTP 175
>pdb|3MKQ|A Chain A, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|C Chain C, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
pdb|3MKQ|E Chain E, Crystal Structure Of Yeast AlphaBETAPRIME-Cop Subcomplex
Of The Copi Vesicular Coat
Length = 814
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
++TAS D TIKIWD + K C L GH ++ HPT I++SGS DG+ IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Score = 33.1 bits (74), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 323 YVKS-EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381
Y++S + P ++LSGS D +W A + H+ V V + P + +
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 382 SSDDYTVRLWSL 393
D TV++WSL
Sbjct: 159 GCLDRTVKVWSL 170
Score = 32.3 bits (72), Expect = 0.61, Method: Compositional matrix adjust.
Identities = 28/109 (25%), Positives = 48/109 (44%), Gaps = 18/109 (16%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLC--SHPTNSDILVSGSRDGSFAIWDL 180
I++ S D T+KIW++ K L + G +S C +HPT ++ D F + L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
Query: 181 -------------RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR 216
+ S N A S +F +AV++G + Q + +S +
Sbjct: 301 GNDEPTLSLDPVGKLVWSGGKNAAASDIF-TAVIRGNEEVEQDEPLSLQ 348
Score = 32.0 bits (71), Expect = 0.84, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCS 158
++ D+ AH + I + +L+ S D T+K+W+ E GH + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 159 HPTNSDILVSGSRDGSFAIWDLRCKSSP 186
+P + SG D + +W L +S+P
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL-GQSTP 175
>pdb|2YNO|A Chain A, Yeast Betaprime Cop 1-304h6
pdb|2YNO|B Chain B, Yeast Betaprime Cop 1-304h6
Length = 310
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
++TAS D TIKIWD + K C L GH ++ HPT I++SGS DG+ IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 323 YVKS-EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381
Y++S + P ++LSGS D +W A + H+ V V + P + +
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 382 SSDDYTVRLWSL 393
D TV++WSL
Sbjct: 159 GCLDRTVKVWSL 170
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCS 158
++ D+ AH + I + +L+ S D T+K+W+ E GH + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 159 HPTNSDILVSGSRDGSFAIWDLRCKSSP 186
+P + SG D + +W L +S+P
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL-GQSTP 175
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLC--SHPTNSDILVSGSRDGSFAIWDL 180
I++ S D T+KIW++ K L + G +S C +HPT ++ D F + L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|2YNN|A Chain A, Yeast Betaprime Cop 1-304 With Ktktn Motif
Length = 304
Score = 56.6 bits (135), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 35/57 (61%), Gaps = 1/57 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
++TAS D TIKIWD + K C L GH ++ HPT I++SGS DG+ IW+
Sbjct: 201 MITASDDLTIKIWDYQTKSCVATLEGHMSNVSFAVFHPT-LPIIISGSEDGTLKIWN 256
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/72 (27%), Positives = 33/72 (45%), Gaps = 1/72 (1%)
Query: 323 YVKS-EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381
Y++S + P ++LSGS D +W A + H+ V V + P + +
Sbjct: 99 YIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAFNPKDPSTFAS 158
Query: 382 SSDDYTVRLWSL 393
D TV++WSL
Sbjct: 159 GCLDRTVKVWSL 170
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 21/88 (23%), Positives = 39/88 (44%), Gaps = 2/88 (2%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCS 158
++ D+ AH + I + +L+ S D T+K+W+ E GH + +
Sbjct: 89 KVVDFEAHPDYIRSIAVHPTKPYVLSGSDDLTVKLWNWENNWALEQTFEGHEHFVMCVAF 148
Query: 159 HPTNSDILVSGSRDGSFAIWDLRCKSSP 186
+P + SG D + +W L +S+P
Sbjct: 149 NPKDPSTFASGCLDRTVKVWSL-GQSTP 175
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 4/60 (6%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLC--SHPTNSDILVSGSRDGSFAIWDL 180
I++ S D T+KIW++ K L + G +S C +HPT ++ D F + L
Sbjct: 243 IISGSEDGTLKIWNSSTYKVEKTL--NVGLERSWCIATHPTGRKNYIASGFDNGFTVLSL 300
>pdb|3SHF|A Chain A, Crystal Structure Of The R265s Mutant Of Full-Length
Murine Apaf-1
Length = 1256
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 69 AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---T 125
A S +D Y++ + +K+ + ++A + + H + + C +N L T
Sbjct: 671 AFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLAT 725
Query: 126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185
S D +K+WD +K+C + GHT S+ C + ++L S S DG+ +WD+R +
Sbjct: 726 GSNDFFLKLWDLNQKECRNTMFGHTNSVNH-CRFSPDDELLASCSADGTLRLWDVRSANE 784
Query: 186 PKSNCAESFVFSS 198
KS + F SS
Sbjct: 785 RKSINVKRFFLSS 797
Score = 35.4 bits (80), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 41/89 (46%), Gaps = 6/89 (6%)
Query: 95 NAEKARIS-DWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALMGHTGS 152
N RI D+ HQ + C I D T + S D+T KIW + L GH G
Sbjct: 1078 NVITGRIERDFTCHQGTVLS-CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC 1136
Query: 153 IKSLCSHPTNSDILV-SGSRDGSFAIWDL 180
++ CS + IL+ +G +G IW++
Sbjct: 1137 VR--CSAFSLDGILLATGDDNGEIRIWNV 1163
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 30/155 (19%)
Query: 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFD--SRRKLPSFACHRE--------------- 94
P VS C S + A DEDG + + + + R S H++
Sbjct: 967 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI 1026
Query: 95 -NAEKARISDW----------VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143
++E + I W AHQ + D + +D+ +L+ S D T+K+W+ +
Sbjct: 1027 SSSEDSVIQVWNWQTGDYVFLQAHQETVKDF-RLLQDSRLLSWSFDGTVKVWNVITGRIE 1085
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178
H G++ S C+ +++ S S D + IW
Sbjct: 1086 RDFTCHQGTVLS-CAISSDATKFSSTSADKTAKIW 1119
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 81/402 (20%), Positives = 155/402 (38%), Gaps = 103/402 (25%)
Query: 32 VVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC 91
++ D G + H G + + +C S H+ ++ V L++ +L
Sbjct: 829 LLFDIHTSGLLAEIHTGHHS---TIQYCDFSPYDHLAVIALSQYCVELWNIDSRL----- 880
Query: 92 HRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA------ 145
+++D H + + + + + ++ LTAS DQTI++W+ KK C +
Sbjct: 881 --------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-KKVCKNSAIVLKQ 931
Query: 146 ------------------------LMGHTGSIKSL-------CSHPTNSDILVSGSRDGS 174
+ G TG I L C + + + G DG+
Sbjct: 932 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 991
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
I +L P + VFSS V +KA + + + D +
Sbjct: 992 IKIIEL-----PNNR-----VFSSG-------------VGHKKA----VRHIQFTADGKT 1024
Query: 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294
+ ++S +S+++ W+ + QA H E + K+ R L QDS L +
Sbjct: 1025 LISSSE-DSVIQVWNWQTGDYVFLQA--HQE--TVKDFR------LLQDSR---LLSWSF 1070
Query: 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354
D + ++NV+ G I+ C + + I +A+ S S+D A +W +
Sbjct: 1071 DGTVKVWNVI---TGRIERDFTCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFD--LL 1124
Query: 355 DPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
P+ +LK H+G V + + + T D+ +R+W++ +
Sbjct: 1125 SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSD 1165
>pdb|3SFZ|A Chain A, Crystal Structure Of Full-Length Murine Apaf-1
Length = 1249
Score = 53.5 bits (127), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 36/133 (27%), Positives = 64/133 (48%), Gaps = 9/133 (6%)
Query: 69 AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---T 125
A S +D Y++ + +K+ + ++A + + H + + C +N L T
Sbjct: 664 AFSSDDSYIATCSADKKVKIW----DSATGKLVHTYDEHSEQV-NCCHFTNKSNHLLLAT 718
Query: 126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185
S D +K+WD +K+C + GHT S+ C + ++L S S DG+ +WD+R +
Sbjct: 719 GSNDFFLKLWDLNQKECRNTMFGHTNSVNH-CRFSPDDELLASCSADGTLRLWDVRSANE 777
Query: 186 PKSNCAESFVFSS 198
KS + F SS
Sbjct: 778 RKSINVKRFFLSS 790
Score = 35.4 bits (80), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 6/89 (6%)
Query: 95 NAEKARIS-DWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALMGHTGS 152
N RI D+ HQ + C I D T + S D+T KIW + L GH G
Sbjct: 1071 NVITGRIERDFTCHQGTVLS-CAISSDATKFSSTSADKTAKIWSFDLLSPLHELKGHNGC 1129
Query: 153 IKSLCS-HPTNSDILVSGSRDGSFAIWDL 180
++ CS + +L +G +G IW++
Sbjct: 1130 VR--CSAFSLDGILLATGDDNGEIRIWNV 1156
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 36/155 (23%), Positives = 63/155 (40%), Gaps = 30/155 (19%)
Query: 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFD--SRRKLPSFACHRE--------------- 94
P VS C S + A DEDG + + + + R S H++
Sbjct: 960 PEAQVSCCCLSPHLEYVAFGDEDGAIKIIELPNNRVFSSGVGHKKAVRHIQFTADGKTLI 1019
Query: 95 -NAEKARISDW----------VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143
++E + I W AHQ + D + +D+ +L+ S D T+K+W+ +
Sbjct: 1020 SSSEDSVIQVWNWQTGDYVFLQAHQETVKDF-RLLQDSRLLSWSFDGTVKVWNVITGRIE 1078
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178
H G++ S C+ +++ S S D + IW
Sbjct: 1079 RDFTCHQGTVLS-CAISSDATKFSSTSADKTAKIW 1112
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 81/402 (20%), Positives = 155/402 (38%), Gaps = 103/402 (25%)
Query: 32 VVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC 91
++ D G + H G + + +C S H+ ++ V L++ +L
Sbjct: 822 LLFDIHTSGLLAEIHTGHHS---TIQYCDFSPYDHLAVIALSQYCVELWNIDSRL----- 873
Query: 92 HRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA------ 145
+++D H + + + + + ++ LTAS DQTI++W+ KK C +
Sbjct: 874 --------KVADCRGHLSWVHGVMFSPDGSSFLTASDDQTIRVWET-KKVCKNSAIVLKQ 924
Query: 146 ------------------------LMGHTGSIKSL-------CSHPTNSDILVSGSRDGS 174
+ G TG I L C + + + G DG+
Sbjct: 925 EIDVVFQENETMVLAVDNIRGLQLIAGKTGQIDYLPEAQVSCCCLSPHLEYVAFGDEDGA 984
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
I +L P + VFSS V +KA + + + D +
Sbjct: 985 IKIIEL-----PNNR-----VFSSG-------------VGHKKA----VRHIQFTADGKT 1017
Query: 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294
+ ++S +S+++ W+ + QA H E + K+ R L QDS L +
Sbjct: 1018 LISSSE-DSVIQVWNWQTGDYVFLQA--HQE--TVKDFR------LLQDSR---LLSWSF 1063
Query: 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354
D + ++NV+ G I+ C + + I +A+ S S+D A +W +
Sbjct: 1064 DGTVKVWNVI---TGRIERDFTCH-QGTVLSCAISSDATKFSSTSADKTAKIWSFD--LL 1117
Query: 355 DPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
P+ +LK H+G V + + + T D+ +R+W++ +
Sbjct: 1118 SPLHELKGHNGCVRCSAF-SLDGILLATGDDNGEIRIWNVSD 1158
>pdb|2PBI|B Chain B, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
pdb|2PBI|D Chain D, The Multifunctional Nature Of Gbeta5RGS9 REVEALED FROM ITS
CRYSTAL Structure
Length = 354
Score = 52.0 bits (123), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 56/242 (23%), Positives = 93/242 (38%), Gaps = 42/242 (17%)
Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS-DI 165
H N + + D ILTASGD T +WD E + + GH + L P+ + +
Sbjct: 153 HTNYLSACSFTNSDMQILTASGDGTCALWDVESGQLLQSFHGHGADVLCLDLAPSETGNT 212
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
VSG D +WD+R C ++F + + S
Sbjct: 213 FVSGGCDKKAMVWDMR-----SGQCVQAF----------------------ETHESDVNS 245
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285
V Y + A+ S ++ + +D R + +KE+ + G SS+ +
Sbjct: 246 VRYYPSGDAFASGSD-DATCRLYDLRADREVAIY---------SKESIIFGASSVDFSLS 295
Query: 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY 345
G L A D+ I +++VL+ + I R+ + V P+ + SGS D
Sbjct: 296 GRLLFAGYNDYTINVWDVLKGSRVSILFGHENRVSTLRVS----PDGTAFCSGSWDHTLR 351
Query: 346 VW 347
VW
Sbjct: 352 VW 353
>pdb|2BCJ|B Chain B, Crystal Structure Of G Protein-coupled Receptor Kinase 2
In Complex With Galpha-q And Gbetagamma Subunits
Length = 340
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
R+S +A C +D I+T+SGD T +WD E + T GHTG + SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
P ++ + VSG+ D S +WD+R + C ++F +
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
I ++ + + + AT S ++ + +D R + +T + + + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
+S +G L A D +++ L+ D+ + R+ V + + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
D +W
Sbjct: 332 WDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.46, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 49/271 (18%)
Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD-----------------LRCKSSPKS 188
L GH I ++ T+S +LVS S+DG IWD + C +P
Sbjct: 51 LRGHLAKIYAM-HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 189 N-CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF 247
N A + + + + RVSR A S D+ I T+S ++
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCAL 168
Query: 248 WDTRNLKAQITQAWPHAESSS---AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
WD + T + S A +TRL F++ +C D L++V
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRL-------------FVSGAC-DASAKLWDVR 214
Query: 305 QLDKGPIQHFSGCRIESFYVKSEIC--PNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362
+ Q F+G + + IC PN + +GS D ++ + Q + SH
Sbjct: 215 E--GMCRQTFTGHESD----INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSH 266
Query: 363 DGEVTAVNWCP-NEAGKIVTSS-DDYTVRLW 391
D + + +++G+++ + DD+ +W
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 27/138 (19%)
Query: 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR--RKLPSFACHRENAEKARISDWV 105
G E+ A+ F N + FA +D LFD R ++L +++
Sbjct: 224 GHESDINAICF---FPNGNAFATGSDDATCRLFDLRADQELMTYS--------------- 265
Query: 106 AHQNAIFDLCWI---KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN 162
H N I + + K +L D +WDA K G L GH + C T+
Sbjct: 266 -HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTD 322
Query: 163 SDILV-SGSRDGSFAIWD 179
+ V +GS D IW+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
>pdb|1GG2|B Chain B, G Protein Heterotrimer Mutant Gi_alpha_1(G203a) Beta_1
Gamma_2 With Gdp Bound
pdb|1GP2|B Chain B, G Protein Heterotrimer Gi_alpha_1 Beta_1 Gamma_2 With Gdp
Bound
pdb|1TBG|A Chain A, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|B Chain B, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|C Chain C, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1TBG|D Chain D, Beta-Gamma Dimer Of The Heterotrimeric G-Protein
Transducin
pdb|1OMW|B Chain B, Crystal Structure Of The Complex Between G Protein-Coupled
Receptor Kinase 2 And Heterotrimeric G Protein Beta 1
And Gamma 2 Subunits
pdb|1XHM|A Chain A, The Crystal Structure Of A Biologically Active Peptide
(Sigk) Bound To A G Protein Beta:gamma Heterodimer
pdb|3CIK|B Chain B, Human Grk2 In Complex With Gbetagamma Subunits
pdb|3KRW|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Soak)
pdb|3KRX|B Chain B, Human Grk2 In Complex With Gbetgamma Subunits And Balanol
(Co-Crystal)
pdb|3AH8|B Chain B, Structure Of Heterotrimeric G Protein Galpha-Q Beta Gamma
In Complex With An Inhibitor Ym-254890
pdb|3PSC|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits
pdb|3PVU|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd101)
pdb|3PVW|B Chain B, Bovine Grk2 In Complex With Gbetagamma Subunits And A
Selective Kinase Inhibitor (Cmpd103a)
pdb|3UZS|B Chain B, Structure Of The C13.28 Rna Aptamer Bound To The G
Protein-Coupled Receptor Kinase 2-Heterotrimeric G
Protein Beta 1 And Gamma 2 Subunit Complex
pdb|3V5W|B Chain B, Human G Protein-Coupled Receptor Kinase 2 In Complex With
Soluble Gbetagamma Subunits And Paroxetine
Length = 340
Score = 51.6 bits (122), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
R+S +A C +D I+T+SGD T +WD E + T GHTG + SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
P ++ + VSG+ D S +WD+R + C ++F +
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
I ++ + + + AT S ++ + +D R + +T + + + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
+S +G L A D +++ L+ D+ + R+ V + + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
D +W
Sbjct: 332 WDSFLKIWN 340
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 49/271 (18%)
Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD-----------------LRCKSSPKS 188
L GH I ++ T+S +LVS S+DG IWD + C +P
Sbjct: 51 LRGHLAKIYAM-HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 189 N-CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF 247
N A + + + + RVSR A S D+ I T+S ++
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCAL 168
Query: 248 WDTRNLKAQITQAWPHAESSS---AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
WD + T + S A +TRL F++ +C D L++V
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRL-------------FVSGAC-DASAKLWDVR 214
Query: 305 QLDKGPIQHFSGCRIESFYVKSEIC--PNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362
+ Q F+G + + IC PN + +GS D ++ + Q + SH
Sbjct: 215 E--GMCRQTFTGHESD----INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSH 266
Query: 363 DGEVTAVNWCP-NEAGKIVTSS-DDYTVRLW 391
D + + +++G+++ + DD+ +W
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 27/138 (19%)
Query: 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR--RKLPSFACHRENAEKARISDWV 105
G E+ A+ F N + FA +D LFD R ++L +++
Sbjct: 224 GHESDINAICF---FPNGNAFATGSDDATCRLFDLRADQELMTYS--------------- 265
Query: 106 AHQNAIFDLCWI---KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN 162
H N I + + K +L D +WDA K G L GH + C T+
Sbjct: 266 -HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTD 322
Query: 163 SDILV-SGSRDGSFAIWD 179
+ V +GS D IW+
Sbjct: 323 DGMAVATGSWDSFLKIWN 340
>pdb|1A0R|B Chain B, Heterotrimeric Complex Of PhosducinTRANSDUCIN BETA-Gamma
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
R+S +A C +D I+T+SGD T +WD E + T GHTG + SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
P ++ + VSG+ D S +WD+R + C ++F +
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
I ++ + + + AT S ++ + +D R + +T + + + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
+S +G L A D +++ L+ D+ + R+ V + + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
D +W
Sbjct: 332 WDSFLKIWN 340
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 49/271 (18%)
Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD-----------------LRCKSSPKS 188
L GH I ++ T+S +L+S S+DG IWD + C +P
Sbjct: 51 LRGHLAKIYAM-HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 189 N-CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF 247
N A + + + + RVSR A S D+ I T+S ++
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCAL 168
Query: 248 WDTRNLKAQITQAWPHAESSS---AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
WD + T + S A +TRL F++ +C D L++V
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRL-------------FVSGAC-DASAKLWDVR 214
Query: 305 QLDKGPIQHFSGCRIESFYVKSEIC--PNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362
+ Q F+G + + IC PN + +GS D ++ + Q + SH
Sbjct: 215 E--GMCRQTFTGHESD----INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSH 266
Query: 363 DGEVTAVNWCP-NEAGKIVTSS-DDYTVRLW 391
D + + +++G+++ + DD+ +W
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
G E+ A+ F N + FA +D LFD R A++ ++ +H
Sbjct: 224 GHESDINAICF---FPNGNAFATGSDDATCRLFDLR------------ADQELMT--YSH 266
Query: 108 QNAIFDLCWI---KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD 164
N I + + K +L D +WDA K G L GH + C T+
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTDDG 324
Query: 165 ILV-SGSRDGSFAIWD 179
+ V +GS D IW+
Sbjct: 325 MAVATGSWDSFLKIWN 340
>pdb|1GOT|B Chain B, Heterotrimeric Complex Of A Gt-AlphaGI-Alpha Chimera And
The Gt-Beta-Gamma Subunits
pdb|2TRC|B Chain B, PhosducinTRANSDUCIN BETA-Gamma Complex
pdb|1B9X|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin
pdb|1B9Y|A Chain A, Structural Analysis Of Phosducin And Its Phosphorylation-
Regulated Interaction With Transducin Beta-Gamma
Length = 340
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/249 (22%), Positives = 101/249 (40%), Gaps = 42/249 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
R+S +A C +D I+T+SGD T +WD E + T GHTG + SL
Sbjct: 134 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 193
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
P ++ + VSG+ D S +WD+R + C ++F +
Sbjct: 194 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 227
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
I ++ + + + AT S ++ + +D R + +T + + + GI+S
Sbjct: 228 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 275
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
+S +G L A D +++ L+ D+ + R+ V + + +GS
Sbjct: 276 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 331
Query: 340 SDGNAYVWQ 348
D +W
Sbjct: 332 WDSFLKIWN 340
Score = 31.6 bits (70), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 59/271 (21%), Positives = 104/271 (38%), Gaps = 49/271 (18%)
Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD-----------------LRCKSSPKS 188
L GH I ++ T+S +L+S S+DG IWD + C +P
Sbjct: 51 LRGHLAKIYAM-HWGTDSRLLLSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 109
Query: 189 N-CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF 247
N A + + + + RVSR A S D+ I T+S ++
Sbjct: 110 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCAL 168
Query: 248 WDTRNLKAQITQAWPHAESSS---AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
WD + T + S A +TRL F++ +C D L++V
Sbjct: 169 WDIETGQQTTTFTGHTGDVMSLSLAPDTRL-------------FVSGAC-DASAKLWDVR 214
Query: 305 QLDKGPIQHFSGCRIESFYVKSEIC--PNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362
+ Q F+G + + IC PN + +GS D ++ + Q + SH
Sbjct: 215 E--GMCRQTFTGHESD----INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSH 266
Query: 363 DGEVTAVNWCP-NEAGKIVTSS-DDYTVRLW 391
D + + +++G+++ + DD+ +W
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVW 297
Score = 30.8 bits (68), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 35/136 (25%), Positives = 53/136 (38%), Gaps = 23/136 (16%)
Query: 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH 107
G E+ A+ F N + FA +D LFD R A++ ++ +H
Sbjct: 224 GHESDINAICF---FPNGNAFATGSDDATCRLFDLR------------ADQELMT--YSH 266
Query: 108 QNAIFDLCWI---KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD 164
N I + + K +L D +WDA K G L GH + C T+
Sbjct: 267 DNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTDDG 324
Query: 165 ILV-SGSRDGSFAIWD 179
+ V +GS D IW+
Sbjct: 325 MAVATGSWDSFLKIWN 340
>pdb|3SN6|B Chain B, Crystal Structure Of The Beta2 Adrenergic Receptor-Gs
Protein Complex
Length = 351
Score = 51.6 bits (122), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 55/248 (22%), Positives = 101/248 (40%), Gaps = 42/248 (16%)
Query: 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH 159
R+S +A C +D I+T+SGD T +WD E + T GHTG + SL
Sbjct: 145 RVSRELAGHTGYLSCCRFLDDNQIVTSSGDTTCALWDIETGQQTTTFTGHTGDVMSLSLA 204
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219
P ++ + VSG+ D S +WD+R + C ++F +
Sbjct: 205 P-DTRLFVSGACDASAKLWDVR-----EGMCRQTFTGHES-------------------- 238
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279
I ++ + + + AT S ++ + +D R + +T + + + GI+S
Sbjct: 239 --DINAICFFPNGNAFATGSD-DATCRLFDLRADQELMTY---------SHDNIICGITS 286
Query: 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339
+S +G L A D +++ L+ D+ + R+ V + + +GS
Sbjct: 287 VSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVSCLGVTDD----GMAVATGS 342
Query: 340 SDGNAYVW 347
D +W
Sbjct: 343 WDSFLKIW 350
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 60/271 (22%), Positives = 104/271 (38%), Gaps = 49/271 (18%)
Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD-----------------LRCKSSPKS 188
L GH I ++ T+S +LVS S+DG IWD + C +P
Sbjct: 62 LRGHLAKIYAM-HWGTDSRLLVSASQDGKLIIWDSYTTNKVHAIPLRSSWVMTCAYAPSG 120
Query: 189 N-CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF 247
N A + + + + RVSR A S D+ I T+S ++
Sbjct: 121 NYVACGGLDNICSIYNLKTREGNVRVSRELAGHTGYLSCCRFLDDNQIVTSSG-DTTCAL 179
Query: 248 WDTRNLKAQITQAWPHAESSS---AKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304
WD + T + S A +TRL F++ +C D L++V
Sbjct: 180 WDIETGQQTTTFTGHTGDVMSLSLAPDTRL-------------FVSGAC-DASAKLWDVR 225
Query: 305 QLDKGPIQHFSGCRIESFYVKSEIC--PNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362
+ Q F+G + + IC PN + +GS D ++ + Q + SH
Sbjct: 226 E--GMCRQTFTGHESD----INAICFFPNGNAFATGSDDATCRLFDLRADQ--ELMTYSH 277
Query: 363 DGEVTAVNWCP-NEAGKIVTSS-DDYTVRLW 391
D + + +++G+++ + DD+ +W
Sbjct: 278 DNIICGITSVSFSKSGRLLLAGYDDFNCNVW 308
Score = 30.8 bits (68), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 35/138 (25%), Positives = 53/138 (38%), Gaps = 27/138 (19%)
Query: 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR--RKLPSFACHRENAEKARISDWV 105
G E+ A+ F N + FA +D LFD R ++L +++
Sbjct: 235 GHESDINAICF---FPNGNAFATGSDDATCRLFDLRADQELMTYS--------------- 276
Query: 106 AHQNAIFDLCWI---KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN 162
H N I + + K +L D +WDA K G L GH + C T+
Sbjct: 277 -HDNIICGITSVSFSKSGRLLLAGYDDFNCNVWDALKADRAGVLAGHDNRVS--CLGVTD 333
Query: 163 SDILV-SGSRDGSFAIWD 179
+ V +GS D IW+
Sbjct: 334 DGMAVATGSWDSFLKIWN 351
>pdb|1P22|A Chain A, Structure Of A Beta-Trcp1-Skp1-Beta-Catenin Complex:
Destruction Motif Binding And Lysine Specificity On The
Scfbeta-Trcp1 Ubiquitin Ligase
Length = 435
Score = 50.1 bits (118), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 69/299 (23%), Positives = 122/299 (40%), Gaps = 40/299 (13%)
Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
C +D I++ D TIKIWD +C L GHTGS+ L + ++++GS D +
Sbjct: 138 CLQYDDQKIVSGLRDNTIKIWDKNTLECKRILTGHTGSVLCL---QYDERVIITGSSDST 194
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
+WD+ + +++ SK S S T + + V
Sbjct: 195 VRVWDVNTGEMLNTLIHHCEAVLHLRFNNGMMVTCSKDRSIAVWDMASPTDITLRR--VL 252
Query: 235 IATASAVNSIVKFWDTRNLKA---QITQAWPHAESSSAKETRLH--GISSLSQDSNGVFL 289
+ +AVN +V F D + A + + W + + H GI+ L V
Sbjct: 253 VGHRAAVN-VVDFDDKYIVSASGDRTIKVWNTSTCEFVRTLNGHKRGIACLQYRDRLVVS 311
Query: 290 TASCMDHRIYLYNV-----LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344
+S D+ I L+++ L++ +G + R ++ I+SG+ DG
Sbjct: 312 GSS--DNTIRLWDIECGACLRVLEGHEELVRCIRFDN-----------KRIVSGAYDGKI 358
Query: 345 YVWQV-----NKPQADPIKLKS---HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
VW + + A + L++ H G V + + + +IV+SS D T+ +W N
Sbjct: 359 KVWDLVAALDPRAPAGTLCLRTLVEHSGRVFRLQF---DEFQIVSSSHDDTILIWDFLN 414
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 3/67 (4%)
Query: 114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG 173
LC ++ I+T S D T+++WD + L+ H ++ L N+ ++V+ S+D
Sbjct: 177 LCLQYDERVIITGSSDSTVRVWDVNTGEMLNTLIHHCEAVLHL---RFNNGMMVTCSKDR 233
Query: 174 SFAIWDL 180
S A+WD+
Sbjct: 234 SIAVWDM 240
>pdb|1NEX|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
pdb|1NEX|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Cpd Peptide Complex
Length = 464
Score = 49.7 bits (117), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 66/281 (23%)
Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
C ED ++T + D+ I+++D+ KK L GH G + +L + ILVSGS D +
Sbjct: 127 CLQFEDNYVITGADDKXIRVYDSINKKFLLQLSGHDGGVWAL--KYAHGGILVSGSTDRT 184
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
+WD++ K C F ++ V+ ++ K+
Sbjct: 185 VRVWDIK-----KGCCTHVFEGHNSTVR--------------------CLDIVEYKNIKY 219
Query: 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294
I T S N++ W + SS + HG D VF T
Sbjct: 220 IVTGSRDNTL--------------HVWKLPKESSVPD---HG---EEHDYPLVFHTP--- 256
Query: 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354
+ Y VL+ ++ SG + + ++SGS D VW V + +
Sbjct: 257 EENPYFVGVLRGHXASVRTVSG--------------HGNIVVSGSYDNTLIVWDVAQXKC 302
Query: 355 DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
I L H + + + +E + +++S D T+R+W LEN
Sbjct: 303 LYI-LSGHTDRIYSTIY-DHERKRCISASXDTTIRIWDLEN 341
Score = 43.5 bits (101), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + I+ + E ++AS D TI+IWD E + L GHT + L +
Sbjct: 308 GHTDRIYSTIYDHERKRCISASXDTTIRIWDLENGELXYTLQGHTALVGLL---RLSDKF 364
Query: 166 LVSGSRDGSFAIWD 179
LVS + DGS WD
Sbjct: 365 LVSAAADGSIRGWD 378
Score = 35.8 bits (81), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 26/92 (28%)
Query: 112 FDLCWIKEDTNILTASGDQTIKIWDAEKKKCT-----------------------GALMG 148
D+ K I+T S D T+ +W K+ G L G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 149 HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
H S++++ H +I+VSGS D + +WD+
Sbjct: 269 HXASVRTVSGH---GNIVVSGSYDNTLIVWDV 297
>pdb|3MKS|B Chain B, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3MKS|D Chain D, Crystal Structure Of Yeast Cdc4SKP1 IN COMPLEX WITH AN
ALLOSTERIC Inhibitor Scf-I2
pdb|3V7D|B Chain B, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
pdb|3V7D|D Chain D, Crystal Structure Of Scskp1-Sccdc4-Psic1 Peptide Complex
Length = 464
Score = 49.3 bits (116), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 65/281 (23%), Positives = 110/281 (39%), Gaps = 66/281 (23%)
Query: 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
C ED ++T + D+ I+++D+ KK L GH G + +L + ILVSGS D +
Sbjct: 127 CLQFEDNYVITGADDKMIRVYDSINKKFLLQLSGHDGGVWAL--KYAHGGILVSGSTDRT 184
Query: 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS 234
+WD++ K C F ++ V+ ++ K+
Sbjct: 185 VRVWDIK-----KGCCTHVFEGHNSTVR--------------------CLDIVEYKNIKY 219
Query: 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294
I T S N++ W + SS + HG D VF T
Sbjct: 220 IVTGSRDNTL--------------HVWKLPKESSVPD---HG---EEHDYPLVFHTP--- 256
Query: 295 DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354
+ Y VL+ ++ SG + + ++SGS D VW V + +
Sbjct: 257 EENPYFVGVLRGHMASVRTVSG--------------HGNIVVSGSYDNTLIVWDVAQMKC 302
Query: 355 DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
I L H + + + +E + +++S D T+R+W LEN
Sbjct: 303 LYI-LSGHTDRIYSTIY-DHERKRCISASMDTTIRIWDLEN 341
Score = 43.1 bits (100), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/74 (33%), Positives = 35/74 (47%), Gaps = 3/74 (4%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + I+ + E ++AS D TI+IWD E + L GHT + L +
Sbjct: 308 GHTDRIYSTIYDHERKRCISASMDTTIRIWDLENGELMYTLQGHTALVGLL---RLSDKF 364
Query: 166 LVSGSRDGSFAIWD 179
LVS + DGS WD
Sbjct: 365 LVSAAADGSIRGWD 378
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 23/92 (25%), Positives = 37/92 (40%), Gaps = 26/92 (28%)
Query: 112 FDLCWIKEDTNILTASGDQTIKIWDAEKKKCT-----------------------GALMG 148
D+ K I+T S D T+ +W K+ G L G
Sbjct: 209 LDIVEYKNIKYIVTGSRDNTLHVWKLPKESSVPDHGEEHDYPLVFHTPEENPYFVGVLRG 268
Query: 149 HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
H S++++ H +I+VSGS D + +WD+
Sbjct: 269 HMASVRTVSGH---GNIVVSGSYDNTLIVWDV 297
>pdb|1VYH|C Chain C, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|D Chain D, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|G Chain G, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|H Chain H, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|K Chain K, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|L Chain L, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|O Chain O, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|P Chain P, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|S Chain S, Paf-Ah Holoenzyme: Lis1ALFA2
pdb|1VYH|T Chain T, Paf-Ah Holoenzyme: Lis1ALFA2
Length = 410
Score = 48.5 bits (114), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 75/332 (22%), Positives = 131/332 (39%), Gaps = 69/332 (20%)
Query: 87 PSFACHRENAEKARISDW-----------VAHQNAIFDLCWIKEDTNILTASGDQTIKIW 135
P F+ +E A I W H +++ D+ + + + S D TIK+W
Sbjct: 118 PVFSVMVSASEDATIKVWDYETGDFERTLKGHTDSVQDISFDHSGKLLASCSADMTIKLW 177
Query: 136 DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195
D + +C + GH ++ S+ P N D +VS SRD + +W+++ C ++F
Sbjct: 178 DFQGFECIRTMHGHDHNVSSVSIMP-NGDHIVSASRDKTIKMWEVQT-----GYCVKTF- 230
Query: 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW--DTRNL 253
R+ M V +D IA+ S + V+ W T+
Sbjct: 231 -----------------TGHREWVRM----VRPNQDGTLIASCSN-DQTVRVWVVATKEC 268
Query: 254 KAQITQ--------AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV-- 303
KA++ + +W ESS + + G + G FL + D I +++V
Sbjct: 269 KAELREHRHVVECISWA-PESSYSSISEATGSETKKSGKPGPFLLSGSRDKTIKMWDVST 327
Query: 304 ----LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
+ L + H + R F+ ILS + D VW + L
Sbjct: 328 GMCLMTL----VGHDNWVRGVLFH------SGGKFILSCADDKTLRVWDYKNKRCMKT-L 376
Query: 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
+H+ VT++++ A +VT S D TV++W
Sbjct: 377 NAHEHFVTSLDF-HKTAPYVVTGSVDQTVKVW 407
Score = 44.7 bits (104), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/77 (29%), Positives = 41/77 (53%), Gaps = 1/77 (1%)
Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD 164
V H N + + + IL+ + D+T+++WD + K+C L H + SL H T +
Sbjct: 335 VGHDNWVRGVLFHSGGKFILSCADDKTLRVWDYKNKRCMKTLNAHEHFVTSLDFHKT-AP 393
Query: 165 ILVSGSRDGSFAIWDLR 181
+V+GS D + +W+ R
Sbjct: 394 YVVTGSVDQTVKVWECR 410
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/62 (33%), Positives = 33/62 (53%), Gaps = 4/62 (6%)
Query: 335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK-IVTSSDDYTVRLWSL 393
+LSGS D +W V+ + L HD V V + + GK I++ +DD T+R+W
Sbjct: 311 LLSGSRDKTIKMWDVSTGMC-LMTLVGHDNWVRGVLF--HSGGKFILSCADDKTLRVWDY 367
Query: 394 EN 395
+N
Sbjct: 368 KN 369
>pdb|3DM0|A Chain A, Maltose Binding Protein Fusion With Rack1 From A. Thaliana
Length = 694
Score = 47.4 bits (111), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%), Gaps = 1/58 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
I++AS D+T+K+W+ K L GHTG + ++ P S + SG +DG +WDL
Sbjct: 534 IVSASWDKTVKVWNLSNCKLRSTLAGHTGYVSTVAVSPDGS-LCASGGKDGVVLLWDL 590
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 80/344 (23%), Positives = 137/344 (39%), Gaps = 57/344 (16%)
Query: 85 KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKK-- 141
K P A ENA+K I + +A W T ++ ASG QT+ A +
Sbjct: 313 KDPRIAATMENAQKGEIMPNIPQMSAF----WYAVRTAVINAASGRQTVDAALAAAQTNA 368
Query: 142 -----CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL----------RCKSSP 186
G + HT + ++ + N+DI+VS SRD S +W L + + +
Sbjct: 369 AAGLVLKGTMRAHTDMVTAIATPIDNADIIVSASRDKSIILWKLTKDDKAYGVAQRRLTG 428
Query: 187 KSNCAESFVFSSAVVKGAHLLSQS----KRVSRRKAASMSITSVLYLKDEVSIATASAVN 242
S+ E V SS G LS S R+ A + V + KD +S+A +
Sbjct: 429 HSHFVEDVVLSS---DGQFALSGSWDGELRLWDLAAGVSTRRFVGHTKDVLSVAFSLDNR 485
Query: 243 SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV--FLTASCMDHRIYL 300
IV R +K T S E +S + N + + ++ D + +
Sbjct: 486 QIVSASRDRTIKLWNTLGECKYTISEGGEGHRDWVSCVRFSPNTLQPTIVSASWDKTVKV 545
Query: 301 YNVLQLDKGPIQHFSGCRIESF------YVKS-EICPNASHILSGSSDGNAYVWQVNKPQ 353
+N+ S C++ S YV + + P+ S SG DG +W +
Sbjct: 546 WNL-----------SNCKLRSTLAGHTGYVSTVAVSPDGSLCASGGKDGVVLLWDL---- 590
Query: 354 ADPIKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
A+ KL S + + A+ + PN + ++ ++ +++W LE+
Sbjct: 591 AEGKKLYSLEANSVIHALCFSPNR--YWLCAATEHGIKIWDLES 632
>pdb|3IZ6|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 5.5 A Cryo-Em Map Of Triticum Aestivum Translating 80s
Ribosome
Length = 380
Score = 47.0 bits (110), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 56/239 (23%), Positives = 98/239 (41%), Gaps = 46/239 (19%)
Query: 119 EDTNILTASGDQTIKIWD---AEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDG 173
++T ++T SGDQT +WD ++ G+ GHT + SL + N+++ +SGS D
Sbjct: 169 QETRLITGSGDQTCVLWDVTTGQRISIFGSEFPSGHTADVLSLSINSLNANMFISGSCDT 228
Query: 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV 233
+ +WDLR +S V+ H I SV + D
Sbjct: 229 TVRLWDLR--------------ITSRAVRTYH------------GHEGDINSVKFFPDGQ 262
Query: 234 SIATASAVNSIVKFWDTR-NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS 292
T S + + +D R + Q+ P + L ++S++ +G L A
Sbjct: 263 RFGTGSD-DGTCRLFDMRTGHQLQVYNREP-----DRNDNELPIVTSVAFSISGRLLFAG 316
Query: 293 CMDHRIYLYNVLQ----LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347
+ Y+++ L L+ G +Q+ RI + S+ S + +GS D N +W
Sbjct: 317 YSNGDCYVWDTLLAEMVLNLGTLQNSHEGRISCLGLSSD----GSALCTGSWDKNLKIW 371
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 18/64 (28%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Query: 331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL 390
NA+ +SGS D +W + H+G++ +V + P + + T SDD T RL
Sbjct: 217 NANMFISGSCDTTVRLWDLRITSRAVRTYHGHEGDINSVKFFP-DGQRFGTGSDDGTCRL 275
Query: 391 WSLE 394
+ +
Sbjct: 276 FDMR 279
Score = 32.3 bits (72), Expect = 0.73, Method: Compositional matrix adjust.
Identities = 22/92 (23%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H ++ L W E I++AS D + +W+A + T A+ H + C+ N
Sbjct: 64 GHSGKVYSLDWTPEKNWIVSASQDGRLIVWNALTSQKTHAIKLHCPWVME-CAFAPNGQS 122
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197
+ G D + +I++L ++ N S V +
Sbjct: 123 VACGGLDSACSIFNLSSQADRDGNMPVSRVLT 154
Score = 30.4 bits (67), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 33/71 (46%), Gaps = 8/71 (11%)
Query: 330 PNASHILSGSSDGNAYVWQVNKPQAD-----PIK--LKSHDGEVTAVNWCPNEAGKIVTS 382
PN + G D ++ ++ QAD P+ L H G ++ + P++ +++T
Sbjct: 118 PNGQSVACGGLDSACSIFNLSS-QADRDGNMPVSRVLTGHKGYASSCQYVPDQETRLITG 176
Query: 383 SDDYTVRLWSL 393
S D T LW +
Sbjct: 177 SGDQTCVLWDV 187
>pdb|3IZA|A Chain A, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|B Chain B, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|C Chain C, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|D Chain D, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|E Chain E, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|F Chain F, Structure Of An Apoptosome-Procaspase-9 Card Complex
pdb|3IZA|G Chain G, Structure Of An Apoptosome-Procaspase-9 Card Complex
Length = 1263
Score = 46.6 bits (109), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 37/75 (49%), Gaps = 1/75 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182
+ T S D +K+WD +K+C + GHT S+ C + +L S S DG+ +WD
Sbjct: 722 LATGSSDCFLKLWDLNQKECRNTMFGHTNSVNH-CRFSPDDKLLASCSADGTLKLWDATS 780
Query: 183 KSSPKSNCAESFVFS 197
+ KS + F +
Sbjct: 781 ANERKSINVKQFFLN 795
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 39/80 (48%), Gaps = 5/80 (6%)
Query: 103 DWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCS-HP 160
D+V HQ + C I D T + S D+T KIW + L GH G ++ CS
Sbjct: 1086 DFVCHQGTVLS-CDISHDATKFSSTSADKTAKIWSFDLLLPLHELRGHNGCVR--CSAFS 1142
Query: 161 TNSDILVSGSRDGSFAIWDL 180
+S +L +G +G IW++
Sbjct: 1143 VDSTLLATGDDNGEIRIWNV 1162
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 62/299 (20%), Positives = 111/299 (37%), Gaps = 57/299 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD- 164
AH++ + + +D I T S D+ +KIW++ + H+ + C H TNS
Sbjct: 661 AHEDEVLCCAFSTDDRFIATCSVDKKVKIWNSMTGELVHTYDEHSEQVN--CCHFTNSSH 718
Query: 165 --ILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222
+L +GS D +WDL K C + + S
Sbjct: 719 HLLLATGSSDCFLKLWDLNQKE-----CRNTMF----------------------GHTNS 751
Query: 223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ----ITQAWPHAESSSAKETRLHGIS 278
+ + D+ +A+ SA + +K WD + + + Q + + E +
Sbjct: 752 VNHCRFSPDDKLLASCSA-DGTLKLWDATSANERKSINVKQFFLNLEDPQEDMEVIVKCC 810
Query: 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE------SFYVKSEICPNA 332
S S D + + A ++I+L+++ H SG E S + P
Sbjct: 811 SWSADGARIMVAAK---NKIFLFDI---------HTSGLLGEIHTGHHSTIQYCDFSPQN 858
Query: 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
+ S +W + ++ + H V V + P + +TSSDD T+RLW
Sbjct: 859 HLAVVALSQYCVELWNTD-SRSKVADCRGHLSWVHGVMFSP-DGSSFLTSSDDQTIRLW 915
Score = 34.7 bits (78), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 26/125 (20%), Positives = 53/125 (42%), Gaps = 16/125 (12%)
Query: 56 VSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115
VS C S + A DE+G + + E H+ ++ +
Sbjct: 970 VSCCCLSPHLQYIAFGDENGAIEIL-------------ELVNNRIFQSRFQHKKTVWHIQ 1016
Query: 116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSF 175
+ ++ ++++S D I++W+ + KC L GH ++K + L+S S DG+
Sbjct: 1017 FTADEKTLISSSDDAEIQVWNWQLDKCI-FLRGHQETVKDF--RLLKNSRLLSWSFDGTV 1073
Query: 176 AIWDL 180
+W++
Sbjct: 1074 KVWNI 1078
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 25/125 (20%), Positives = 57/125 (45%), Gaps = 20/125 (16%)
Query: 23 ARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDS 82
A+ + + D+ T +G + HH + +C S +H+ V+ V L+++
Sbjct: 823 AKNKIFLFDIHTSGL-LGEIHTGHHS------TIQYCDFSPQNHLAVVALSQYCVELWNT 875
Query: 83 RRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142
+++++D H + + + + + ++ LT+S DQTI++W+ +K
Sbjct: 876 D-------------SRSKVADCRGHLSWVHGVMFSPDGSSFLTSSDDQTIRLWETKKVCK 922
Query: 143 TGALM 147
A+M
Sbjct: 923 NSAVM 927
>pdb|3FRX|A Chain A, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|B Chain B, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|C Chain C, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1.
pdb|3FRX|D Chain D, Crystal Structure Of The Yeast Orthologue Of Rack1, Asc1
Length = 319
Score = 46.2 bits (108), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
+DWV+ + + + I++A D+ +K W+ + + +GH +I +L + P
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKXVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
+ ++ S +DG +W+L K + + A+ VFS A
Sbjct: 208 GT-LIASAGKDGEIXLWNLAAKKAXYTLSAQDEVFSLA 244
Score = 37.0 bits (84), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/78 (25%), Positives = 38/78 (48%), Gaps = 1/78 (1%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D + L+AS D+T+++WD + +GH + S+ S I
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVXSVDIDKKASXI 122
Query: 166 LVSGSRDGSFAIWDLRCK 183
+SGSRD + +W ++ +
Sbjct: 123 -ISGSRDKTIKVWTIKGQ 139
Score = 34.7 bits (78), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 11/124 (8%)
Query: 275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH 334
H + + ++G + ++ D + L++V + Q F G + + V +I AS
Sbjct: 66 HIVQDCTLTADGAYALSASWDKTLRLWDVATGE--TYQRFVGHKSDVXSV--DIDKKASX 121
Query: 335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG-----KIVTSSDDYTVR 389
I+SGS D VW + K Q L H+ V+ V PNE I+++ +D V+
Sbjct: 122 IISGSRDKTIKVWTI-KGQC-LATLLGHNDWVSQVRVVPNEKADDDSVTIISAGNDKXVK 179
Query: 390 LWSL 393
W+L
Sbjct: 180 AWNL 183
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/74 (31%), Positives = 32/74 (43%), Gaps = 7/74 (9%)
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK- 202
G L GH G + SL + ++L+S SRD + W L SF S +V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 203 ------GAHLLSQS 210
GA+ LS S
Sbjct: 71 CTLTADGAYALSAS 84
>pdb|3IZB|AA Chain a, Localization Of The Small Subunit Ribosomal Proteins Into
A 6.1 A Cryo-Em Map Of Saccharomyces Cerevisiae
Translating 80s Ribosome
pdb|3O2Z|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The First 80s In The Asymmetric Unit.
pdb|3O30|T Chain T, Yeast 80s Ribosome. This Entry Consists Of The 40s Subunit
Of The Second 80s In The Asymmetric Unit.
pdb|3U5C|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome A
pdb|3U5G|GG Chain g, The Structure Of The Eukaryotic Ribosome At 3.0 A
Resolution. This Entry Contains Proteins Of The 40s
Subunit, Ribosome B
Length = 319
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
+DWV+ + + + I++A D+ +K W+ + + +GH +I +L + P
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
+ ++ S +DG +W+L K + + A+ VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Score = 38.1 bits (87), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D + L+AS D+T+++WD + +GH + S+ S +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-M 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
++SGSRD + +W + K C + + + V SQ + V KA
Sbjct: 122 IISGSRDKTIKVWTI------KGQCLATLLGHNDWV------SQVRVVPNEKA------- 162
Query: 226 VLYLKDEVSIATASAVNS-IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284
D+ S+ SA N +VK W+ QI + S+ I++L+
Sbjct: 163 -----DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSN---------INTLTASP 206
Query: 285 NGVFLTASCMDHRIYLYNV 303
+G + ++ D I L+N+
Sbjct: 207 DGTLIASAGKDGEIMLWNL 225
Score = 33.1 bits (74), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 45/257 (17%)
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK- 202
G L GH G + SL + ++L+S SRD + W L SF S +V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 203 ------GAHLLSQS----------------KRVSRRKAASMSITSVLYLKDEVSIATASA 240
GA+ LS S +R K+ MS+ + + S+ + +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS 126
Query: 241 VNSIVKFWDTRNLKAQ-ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
+ +K W +K Q + H + S ++ + + D + V + ++ D +
Sbjct: 127 RDKTIKVW---TIKGQCLATLLGHNDWVS----QVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 300 LYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357
+N+ Q++ I H S + P+ + I S DG +W + +A
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKA-MY 232
Query: 358 KLKSHDGEVTAVNWCPN 374
L + D EV ++ + PN
Sbjct: 233 TLSAQD-EVFSLAFSPN 248
>pdb|3RFG|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
pdb|3RFG|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P63
Length = 319
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
+DWV+ + + + I++A D+ +K W+ + + +GH +I +L + P
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
+ ++ S +DG +W+L K + + A+ VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D + L+AS D+T+++WD + +GH + S+ S +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-M 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
++SGSRD + +W + K C + + + V SQ + V KA
Sbjct: 122 IISGSRDKTIKVWTI------KGQCLATLLGHNDWV------SQVRVVPNEKA------- 162
Query: 226 VLYLKDEVSIATASAVNS-IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284
D+ S+ SA N +VK W+ QI + S+ I++L+
Sbjct: 163 -----DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSN---------INTLTASP 206
Query: 285 NGVFLTASCMDHRIYLYNV 303
+G + ++ D I L+N+
Sbjct: 207 DGTLIASAGKDGEIMLWNL 225
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 45/257 (17%)
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK- 202
G L GH G + SL + ++L+S SRD + W L SF S +V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 203 ------GAHLLSQS----------------KRVSRRKAASMSITSVLYLKDEVSIATASA 240
GA+ LS S +R K+ MS+ + + S+ + +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS 126
Query: 241 VNSIVKFWDTRNLKAQ-ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
+ +K W +K Q + H + S ++ + + D + V + ++ D +
Sbjct: 127 RDKTIKVW---TIKGQCLATLLGHNDWVS----QVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 300 LYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357
+N+ Q++ I H S + P+ + I S DG +W + +A
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKA-MY 232
Query: 358 KLKSHDGEVTAVNWCPN 374
L + D EV ++ + PN
Sbjct: 233 TLSAQD-EVFSLAFSPN 248
>pdb|4GGD|A Chain A, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC.
pdb|4GGD|B Chain B, Structural Analysis Of Human Cdc20 Supports Multisite
Degron Recognition By ApcC
Length = 431
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 111/288 (38%), Gaps = 53/288 (18%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
I + WIKE + + +++WD +++K + H+ + SL NS IL SGS
Sbjct: 161 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGS 217
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
R G D+R AE V A + G S + + +
Sbjct: 218 RSGHIHHHDVR--------VAEHHV---ATLSG---------------HSQEVCGLRWAP 251
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
D +A+ N +V W + A W ++ + + + ++ SN +
Sbjct: 252 DGRHLASGGNDN-LVNVWPS----APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 306
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-----PNASHILSGS--SDGN 343
D I ++NV SG + + S++C P+ ++SG +
Sbjct: 307 GGTSDRHIRIWNVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 356
Query: 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
+W+ A +LK H V ++ P+ A + +++ D T+RLW
Sbjct: 357 LVIWKY-PTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLW 402
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 313 HFSGCRIESFYVKS------EIC-----PNASHILSGSSDGNAYVWQVNKPQADPIKLKS 361
H R+ +V + E+C P+ H+ SG +D VW + + L++
Sbjct: 223 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 282
Query: 362 ---HDGEVTAVNWCPNEAGKIVT--SSDDYTVRLWSL 393
H G V AV WCP ++ + T + D +R+W++
Sbjct: 283 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 319
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 36/209 (17%), Positives = 81/209 (38%), Gaps = 35/209 (16%)
Query: 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121
S NS+I + G++ D R + ++ H + L W +
Sbjct: 207 SWNSYILSSGSRSGHIHHHDVR------------VAEHHVATLSGHSQEVCGLRWAPDGR 254
Query: 122 NILTASGDQTIKIWDAEKKKC----TGALMGHTGSIKSLCSHPTNSDILVS--GSRDGSF 175
++ + D + +W + + H G++K++ P S++L + G+ D
Sbjct: 255 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 314
Query: 176 AIWDL---RCKSSPKSNCAESFVFSSAVVK---GAHLLSQSK----------RVSRRKAA 219
IW++ C S+ ++ + S K H +Q++ +V+ K
Sbjct: 315 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 374
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFW 248
+ + S+ D ++A+A+A + ++ W
Sbjct: 375 TSRVLSLTMSPDGATVASAAA-DETLRLW 402
>pdb|1TRJ|A Chain A, Homology Model Of Yeast Rack1 Protein Fitted Into 11.7a
Cryo-em Map Of Yeast 80s Ribosome
Length = 314
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
+DWV+ + + + I++A D+ +K W+ + + +GH +I +L + P
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
+ ++ S +DG +W+L K + + A+ VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D + L+AS D+T+++WD + +GH + S+ S +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-M 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
++SGSRD + +W + K C + + + V SQ + V KA
Sbjct: 122 IISGSRDKTIKVWTI------KGQCLATLLGHNDWV------SQVRVVPNEKA------- 162
Query: 226 VLYLKDEVSIATASAVNS-IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284
D+ S+ SA N +VK W+ QI + S+ I++L+
Sbjct: 163 -----DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSN---------INTLTASP 206
Query: 285 NGVFLTASCMDHRIYLYNV 303
+G + ++ D I L+N+
Sbjct: 207 DGTLIASAGKDGEIMLWNL 225
Score = 33.1 bits (74), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 45/257 (17%)
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK- 202
G L GH G + SL + ++L+S SRD + W L SF S +V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 203 ------GAHLLSQS----------------KRVSRRKAASMSITSVLYLKDEVSIATASA 240
GA+ LS S +R K+ MS+ + + S+ + +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS 126
Query: 241 VNSIVKFWDTRNLKAQ-ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
+ +K W +K Q + H + S ++ + + D + V + ++ D +
Sbjct: 127 RDKTIKVW---TIKGQCLATLLGHNDWVS----QVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 300 LYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357
+N+ Q++ I H S + P+ + I S DG +W + +A
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKA-MY 232
Query: 358 KLKSHDGEVTAVNWCPN 374
L + D EV ++ + PN
Sbjct: 233 TLSAQD-EVFSLAFSPN 248
>pdb|2YMU|A Chain A, Structure Of A Highly Repetitive Propeller Structure
pdb|2YMU|B Chain B, Structure Of A Highly Repetitive Propeller Structure
Length = 577
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 75/316 (23%), Positives = 130/316 (41%), Gaps = 41/316 (12%)
Query: 90 ACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGH 149
H E+ R+ AH +++ + + + I +AS D+T+K+W+ + L GH
Sbjct: 1 GSHMGVKERNRLE---AHSSSVRGVAFSPDGQTIASASDDKTVKLWN-RNGQLLQTLTGH 56
Query: 150 TGSIKSLCSHPTNSDILVSGSRDGSFAIWD--------LRCKSSPKSNCAES----FVFS 197
+ S+ + P + + S S D + +W+ L SS A S + S
Sbjct: 57 SSSVWGVAFSP-DGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIAS 115
Query: 198 SAVVKGAHLLSQSKRVSRRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256
++ K L +++ ++ + S S+ V + D +IA+AS + VK W N Q
Sbjct: 116 ASDDKTVKLWNRNGQLLQTLTGHSSSVWGVAFSPDGQTIASASD-DKTVKLW---NRNGQ 171
Query: 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV-LQLDKGPIQHFS 315
+ Q SS + ++ +G + ++ D + L+N QL + H S
Sbjct: 172 LLQTLTGHSSS---------VWGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSS 222
Query: 316 GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE 375
R +F P+ I S S D +W N L H V V + P +
Sbjct: 223 SVRGVAF------SPDGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSSVNGVAFRP-D 273
Query: 376 AGKIVTSSDDYTVRLW 391
I ++SDD TV+LW
Sbjct: 274 GQTIASASDDKTVKLW 289
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 70/301 (23%), Positives = 125/301 (41%), Gaps = 38/301 (12%)
Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD 164
H ++++ + + + I +AS D+T+K+W+ + L GH+ S+ + P +
Sbjct: 300 TGHSSSVWGVAFSPDGQTIASASDDKTVKLWNRNGQHLQ-TLTGHSSSVWGVAFSP-DGQ 357
Query: 165 ILVSGSRDGSFAIWD--------LRCKSSPKSNCAES----FVFSSAVVKGAHLLSQSKR 212
+ S S D + +W+ L SS A S + S++ K L +++ +
Sbjct: 358 TIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAFSPDGQTIASASDDKTVKLWNRNGQ 417
Query: 213 VSRRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271
+ + S S+ V + D+ +IA+AS + VK W N Q+ Q SS
Sbjct: 418 LLQTLTGHSSSVWGVAFSPDDQTIASASD-DKTVKLW---NRNGQLLQTLTGHSSS---- 469
Query: 272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNV-LQLDKGPIQHFSGCRIESFYVKSEICP 330
+ ++ +G + ++ D + L+N QL + H S R +F P
Sbjct: 470 -----VRGVAFSPDGQTIASASDDKTVKLWNRNGQLLQTLTGHSSSVRGVAF------SP 518
Query: 331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL 390
+ I S S D +W N L H V V + P + I ++S D TV+L
Sbjct: 519 DGQTIASASDDKTVKLWNRNGQLLQT--LTGHSSSVWGVAFSP-DGQTIASASSDKTVKL 575
Query: 391 W 391
W
Sbjct: 576 W 576
>pdb|3JYV|R Chain R, Structure Of The 40s Rrna And Proteins And PE TRNA FOR
EUKARYOTIC Ribosome Based On Cryo-Em Map Of Thermomyces
Lanuginosus Ribosome At 8.9a Resolution
Length = 313
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
+DWV+ + + + I++A D+ +K W+ + + +GH +I +L + P
Sbjct: 142 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 201
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
+ ++ S +DG +W+L K + + A+ VFS A
Sbjct: 202 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 238
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D + L+AS D+T+++WD + +GH + S+ S +
Sbjct: 57 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-M 115
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
++SGSRD + +W + K C + + + V SQ + V KA
Sbjct: 116 IISGSRDKTIKVWTI------KGQCLATLLGHNDWV------SQVRVVPNEKA------- 156
Query: 226 VLYLKDEVSIATASAVNS-IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284
D+ S+ SA N +VK W+ QI + S+ I++L+
Sbjct: 157 -----DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSN---------INTLTASP 200
Query: 285 NGVFLTASCMDHRIYLYNV 303
+G + ++ D I L+N+
Sbjct: 201 DGTLIASAGKDGEIMLWNL 219
Score = 33.1 bits (74), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 45/257 (17%)
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK- 202
G L GH G + SL + ++L+S SRD + W L SF S +V+
Sbjct: 5 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 64
Query: 203 ------GAHLLSQS----------------KRVSRRKAASMSITSVLYLKDEVSIATASA 240
GA+ LS S +R K+ MS+ + + S+ + +
Sbjct: 65 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS 120
Query: 241 VNSIVKFWDTRNLKAQ-ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
+ +K W +K Q + H + S ++ + + D + V + ++ D +
Sbjct: 121 RDKTIKVW---TIKGQCLATLLGHNDWVS----QVRVVPNEKADDDSVTIISAGNDKMVK 173
Query: 300 LYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357
+N+ Q++ I H S + P+ + I S DG +W + +A
Sbjct: 174 AWNLNQFQIEADFIGHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKA-MY 226
Query: 358 KLKSHDGEVTAVNWCPN 374
L + D EV ++ + PN
Sbjct: 227 TLSAQD-EVFSLAFSPN 242
>pdb|3RFH|A Chain A, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|B Chain B, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|C Chain C, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
pdb|3RFH|D Chain D, Crystal Structure Of The Yeast Rack1 Dimer In Space Group
P21
Length = 319
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 49/98 (50%), Gaps = 1/98 (1%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT 161
+DWV+ + + + I++A D+ +K W+ + + +GH +I +L + P
Sbjct: 148 NDWVSQVRVVPNEKADDDSVTIISAGNDKMVKAWNLNQFQIEADFIGHNSNINTLTASPD 207
Query: 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199
+ ++ S +DG +W+L K + + A+ VFS A
Sbjct: 208 GT-LIASAGKDGEIMLWNLAAKKAMYTLSAQDEVFSLA 244
Score = 38.1 bits (87), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 45/199 (22%), Positives = 82/199 (41%), Gaps = 37/199 (18%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D + L+AS D+T+++WD + +GH + S+ S +
Sbjct: 63 GHSHIVQDCTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVDIDKKAS-M 121
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
++SGSRD + +W + K C + + + V SQ + V KA
Sbjct: 122 IISGSRDKTIKVWTI------KGQCLATLLGHNDWV------SQVRVVPNEKA------- 162
Query: 226 VLYLKDEVSIATASAVNS-IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284
D+ S+ SA N +VK W+ QI + S+ I++L+
Sbjct: 163 -----DDDSVTIISAGNDKMVKAWNLNQF--QIEADFIGHNSN---------INTLTASP 206
Query: 285 NGVFLTASCMDHRIYLYNV 303
+G + ++ D I L+N+
Sbjct: 207 DGTLIASAGKDGEIMLWNL 225
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 55/257 (21%), Positives = 100/257 (38%), Gaps = 45/257 (17%)
Query: 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK- 202
G L GH G + SL + ++L+S SRD + W L SF S +V+
Sbjct: 11 GTLEGHNGWVTSLATSAGQPNLLLSASRDKTLISWKLTGDDQKFGVPVRSFKGHSHIVQD 70
Query: 203 ------GAHLLSQS----------------KRVSRRKAASMSITSVLYLKDEVSIATASA 240
GA+ LS S +R K+ MS+ + + S+ + +
Sbjct: 71 CTLTADGAYALSASWDKTLRLWDVATGETYQRFVGHKSDVMSVD----IDKKASMIISGS 126
Query: 241 VNSIVKFWDTRNLKAQ-ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299
+ +K W +K Q + H + S ++ + + D + V + ++ D +
Sbjct: 127 RDKTIKVW---TIKGQCLATLLGHNDWVS----QVRVVPNEKADDDSVTIISAGNDKMVK 179
Query: 300 LYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357
+N+ Q++ I H S + P+ + I S DG +W + +A
Sbjct: 180 AWNLNQFQIEADFIGHNSNINTLT------ASPDGTLIASAGKDGEIMLWNLAAKKA-MY 232
Query: 358 KLKSHDGEVTAVNWCPN 374
L + D EV ++ + PN
Sbjct: 233 TLSAQD-EVFSLAFSPN 248
>pdb|2ZKQ|AA Chain a, Structure Of A Mammalian Ribosomal 40s Subunit Within An
80s Complex Obtained By Docking Homology Models Of The
Rna And Proteins Into An 8.7 A Cryo-Em Map
Length = 317
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS----PKSNCAES 193
E+ G L GH G + + + P D+++S SRD + +W L + P+
Sbjct: 3 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 62
Query: 194 FVFSSAVV---KGAHLLSQS----KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV- 245
F S VV G LS S R+ + + V + KD +S+A +S IV
Sbjct: 63 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 122
Query: 246 -------KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI 298
K W+T + Q H+E S S +S+ + + D +
Sbjct: 123 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--------FSPNSSNPIIVSCGWDKLV 174
Query: 299 YLYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356
++N+ +L I H + + P+ S SG DG A +W +N+ +
Sbjct: 175 KVWNLANCKLKTNHIGH------TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--- 225
Query: 357 IKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
L + DG + A+ + PN + ++ ++++W LE
Sbjct: 226 -HLYTLDGGDIINALCFSPNR--YWLCAATGPSIKIWDLEG 263
Score = 37.4 bits (85), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D+ + L+ S D T+++WD T +GHT + S+ N I
Sbjct: 61 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 120
Query: 166 LVSGSRDGSFAIWD 179
VSGSRD + +W+
Sbjct: 121 -VSGSRDKTIKLWN 133
>pdb|4GGA|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 420
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 61/288 (21%), Positives = 111/288 (38%), Gaps = 53/288 (18%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
I + WIKE + + +++WD +++K + H+ + SL NS IL SGS
Sbjct: 150 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSLS---WNSYILSSGS 206
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
R G D+R AE V A + G S + + +
Sbjct: 207 RSGHIHHHDVR--------VAEHHV---ATLSG---------------HSQEVCGLRWAP 240
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
D +A+ N +V W + A W ++ + + + ++ SN +
Sbjct: 241 DGRHLASGGNDN-LVNVWPS----APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 295
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-----PNASHILSGS--SDGN 343
D I ++NV SG + + S++C P+ ++SG +
Sbjct: 296 GGTSDRHIRIWNVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 345
Query: 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
+W+ A +LK H V ++ P+ A + +++ D T+RLW
Sbjct: 346 LVIWKY-PTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLW 391
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/97 (25%), Positives = 44/97 (45%), Gaps = 16/97 (16%)
Query: 313 HFSGCRIESFYVKS------EIC-----PNASHILSGSSDGNAYVWQVNKPQADPIKLKS 361
H R+ +V + E+C P+ H+ SG +D VW + + L++
Sbjct: 212 HHHDVRVAEHHVATLSGHSQEVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQT 271
Query: 362 ---HDGEVTAVNWCPNEAGKIVT--SSDDYTVRLWSL 393
H G V AV WCP ++ + T + D +R+W++
Sbjct: 272 FTQHQGAVKAVAWCPWQSNVLATGGGTSDRHIRIWNV 308
Score = 29.6 bits (65), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 36/209 (17%), Positives = 81/209 (38%), Gaps = 35/209 (16%)
Query: 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121
S NS+I + G++ D R + ++ H + L W +
Sbjct: 196 SWNSYILSSGSRSGHIHHHDVR------------VAEHHVATLSGHSQEVCGLRWAPDGR 243
Query: 122 NILTASGDQTIKIWDAEKKKC----TGALMGHTGSIKSLCSHPTNSDILVS--GSRDGSF 175
++ + D + +W + + H G++K++ P S++L + G+ D
Sbjct: 244 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 303
Query: 176 AIWDL---RCKSSPKSNCAESFVFSSAVVK---GAHLLSQSK----------RVSRRKAA 219
IW++ C S+ ++ + S K H +Q++ +V+ K
Sbjct: 304 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 363
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFW 248
+ + S+ D ++A+A+A + ++ W
Sbjct: 364 TSRVLSLTMSPDGATVASAAA-DETLRLW 391
>pdb|4AOW|A Chain A, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|B Chain B, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
pdb|4AOW|C Chain C, Crystal Structure Of The Human Rack1 Protein At A
Resolution Of 2.45 Angstrom
Length = 340
Score = 45.8 bits (107), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 64/281 (22%), Positives = 112/281 (39%), Gaps = 43/281 (15%)
Query: 138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS----PKSNCAES 193
E+ G L GH G + + + P D+++S SRD + +W L + P+
Sbjct: 26 EQMTLRGTLKGHNGWVTQIATTPQFPDMILSASRDKTIIMWKLTRDETNYGIPQRALRGH 85
Query: 194 FVFSSAVV---KGAHLLSQS----KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV- 245
F S VV G LS S R+ + + V + KD +S+A +S IV
Sbjct: 86 SHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQIVS 145
Query: 246 -------KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI 298
K W+T + Q H+E S S +S+ + + D +
Sbjct: 146 GSRDKTIKLWNTLGVCKYTVQDESHSEWVSCVR--------FSPNSSNPIIVSCGWDKLV 197
Query: 299 YLYNV--LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356
++N+ +L I H + + P+ S SG DG A +W +N+ +
Sbjct: 198 KVWNLANCKLKTNHIGH------TGYLNTVTVSPDGSLCASGGKDGQAMLWDLNEGK--- 248
Query: 357 IKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
L + DG + A+ + PN + ++ ++++W LE
Sbjct: 249 -HLYTLDGGDIINALCFSPNR--YWLCAATGPSIKIWDLEG 286
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 22/74 (29%), Positives = 36/74 (48%), Gaps = 1/74 (1%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + D+ + L+ S D T+++WD T +GHT + S+ N I
Sbjct: 84 GHSHFVSDVVISSDGQFALSGSWDGTLRLWDLTTGTTTRRFVGHTKDVLSVAFSSDNRQI 143
Query: 166 LVSGSRDGSFAIWD 179
VSGSRD + +W+
Sbjct: 144 -VSGSRDKTIKLWN 156
>pdb|1NR0|A Chain A, Two Seven-Bladed Beta-Propeller Domains Revealed By The
Structure Of A C. Elegans Homologue Of Yeast Actin
Interacting Protein 1 (Aip1).
pdb|1PEV|A Chain A, Crystal Structure Of The Actin Interacting Protein From
Caenorhabditis Elegans
Length = 611
Score = 45.1 bits (105), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 74/330 (22%), Positives = 131/330 (39%), Gaps = 39/330 (11%)
Query: 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126
+FA + DG + L++ + ++ + VAH ++F L W + T I +A
Sbjct: 204 LFASTGGDGTIVLYNGVDGTKTGVFEDDSLKN------VAHSGSVFGLTWSPDGTKIASA 257
Query: 127 SGDQTIKIWDAEKKKCTGAL----------MGHTGSIKSLCSHPTNSDILVSGSRDGSF- 175
S D+TIKIW+ K + +G + ++L S N I GS
Sbjct: 258 SADKTIKIWNVATLKVEKTIPVGTRIEDQQLGIIWTKQALVSISANGFINFVNPELGSID 317
Query: 176 -AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ--SKRVSRRKAASMSITSVLYLKDE 232
+ + S+ A+ SA +G H+ S S +S R + T + +K
Sbjct: 318 QVRYGHNKAITALSSSADGKTLFSADAEG-HINSWDISTGISNRVFPDVHATMITGIK-- 374
Query: 233 VSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS-SLSQDSNGVFLTA 291
T S + WD +LK + +SS A +L L+ ++G A
Sbjct: 375 ----TTSKGDLFTVSWD-DHLKV-VPAGGSGVDSSKAVANKLSSQPLGLAVSADGDIAVA 428
Query: 292 SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351
+C H I +Y+ +L + PI + S C + + + G D +V++++
Sbjct: 429 ACYKH-IAIYSHGKLTEVPISYNSSCV--------ALSNDKQFVAVGGQDSKVHVYKLSG 479
Query: 352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381
+K H E+T+V + N A + T
Sbjct: 480 ASVSEVKTIVHPAEITSVAFSNNGAFLVAT 509
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 34/125 (27%), Positives = 57/125 (45%), Gaps = 17/125 (13%)
Query: 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIES--FYVKSEIC----P 330
I+S++ +NG FL A+ ++ Y+V +F S F+ C P
Sbjct: 494 ITSVAFSNNGAFLVATDQSRKVIPYSVAN-------NFELAHTNSWTFHTAKVACVSWSP 546
Query: 331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG--EVTAVNWCPNEAGKIVTSSDDYTV 388
+ + +GS D + VW +NKP PI +K V +V W NE IV++ D +
Sbjct: 547 DNVRLATGSLDNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWL-NET-TIVSAGQDSNI 604
Query: 389 RLWSL 393
+ W++
Sbjct: 605 KFWNV 609
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 23/113 (20%), Positives = 49/113 (43%), Gaps = 2/113 (1%)
Query: 69 AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128
A S+ ++ D RK+ ++ N E A + W H + + W ++ + T S
Sbjct: 498 AFSNNGAFLVATDQSRKVIPYSV-ANNFELAHTNSWTFHTAKVACVSWSPDNVRLATGSL 556
Query: 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHP-TNSDILVSGSRDGSFAIWDL 180
D ++ +W+ K ++ ++ S+ S N +VS +D + W++
Sbjct: 557 DNSVIVWNMNKPSDHPIIIKGAHAMSSVNSVIWLNETTIVSAGQDSNIKFWNV 609
Score = 31.2 bits (69), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 34/70 (48%), Gaps = 7/70 (10%)
Query: 330 PNASHILSGSSDGNAYVW------QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383
P+ S S DG ++ + + D +K +H G V + W P + KI ++S
Sbjct: 200 PDGSLFASTGGDGTIVLYNGVDGTKTGVFEDDSLKNVAHSGSVFGLTWSP-DGTKIASAS 258
Query: 384 DDYTVRLWSL 393
D T+++W++
Sbjct: 259 ADKTIKIWNV 268
>pdb|3ZEY|7 Chain 7, High-resolution Cryo-electron Microscopy Structure Of The
Trypanosoma Brucei Ribosome
Length = 318
Score = 43.9 bits (102), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
++AS D ++++W+ + +C +GHT + S+ P N I VSG RD + +W+++
Sbjct: 83 VSASWDHSLRLWNLQNGQCQYKFLGHTKDVLSVAFSPDNRQI-VSGGRDNALRVWNVK 139
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 36/129 (27%), Positives = 58/129 (44%), Gaps = 11/129 (8%)
Query: 271 ETRLHG----ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQH-FSGCRIESFYVK 325
+ RL G +S ++ +NG F ++ DH + L+N L G Q+ F G + V
Sbjct: 60 DRRLEGHSAFVSDVALSNNGNFAVSASWDHSLRLWN---LQNGQCQYKFLGHTKDVLSVA 116
Query: 326 SEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN-EAGKIVTSSD 384
P+ I+SG D VW V + +H V+ V + P+ +A IV+
Sbjct: 117 --FSPDNRQIVSGGRDNALRVWNVKGECMHTLSRGAHTDWVSCVRFSPSLDAPVIVSGGW 174
Query: 385 DYTVRLWSL 393
D V++W L
Sbjct: 175 DNLVKVWDL 183
Score = 36.2 bits (82), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/58 (31%), Positives = 28/58 (48%), Gaps = 1/58 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
I++ D +K+WD + L GHT + S+ P S + S +DG +WDL
Sbjct: 169 IVSGGWDNLVKVWDLATGRLVTDLKGHTNYVTSVTVSPDGS-LCASSDKDGVARLWDL 225
Score = 29.3 bits (64), Expect = 5.9, Method: Compositional matrix adjust.
Identities = 17/79 (21%), Positives = 38/79 (48%), Gaps = 4/79 (5%)
Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPT- 161
+ H + + + ++ I++ D +++W+ K +C L HT + + P+
Sbjct: 106 LGHTKDVLSVAFSPDNRQIVSGGRDNALRVWNV-KGECMHTLSRGAHTDWVSCVRFSPSL 164
Query: 162 NSDILVSGSRDGSFAIWDL 180
++ ++VSG D +WDL
Sbjct: 165 DAPVIVSGGWDNLVKVWDL 183
>pdb|3GFC|A Chain A, Crystal Structure Of Histone-Binding Protein Rbbp4
pdb|2XU7|A Chain A, Structural Basis For Rbap48 Binding To Fog-1
pdb|2XU7|B Chain B, Structural Basis For Rbap48 Binding To Fog-1
Length = 425
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 64/296 (21%), Positives = 104/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLC 157
HQ + L W ++L+AS D TI +WD G ++ GHT ++ +
Sbjct: 175 GHQKEGYGLSWNPNLSGHLLSASDDHTICLWDISAVPKEGKVVDAKTIFTGHTAVVEDVS 234
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
H + + S + D IWD R ++ K S V
Sbjct: 235 WHLLHESLFGSVADDQKLMIWDTRSNNTSKP---------------------SHSVDAHT 273
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
A ++ Y E +AT SA + V WD RNLK ++ H + + H
Sbjct: 274 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 328
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
N L +S D R+ NV L K + E P
Sbjct: 329 -------NETILASSGTDRRL---NVWDLSK---------------IGEEQSP------E 357
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
+ DG + ++ H +++ +W PNE I + S+D +++W +
Sbjct: 358 DAEDGPPELLFIH---------GGHTAKISDFSWNPNEPWVICSVSEDNIMQVWQM 404
Score = 37.7 bits (86), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 26/37 (70%)
Query: 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
++L+ H E ++W PN +G ++++SDD+T+ LW +
Sbjct: 171 LRLRGHQKEGYGLSWNPNLSGHLLSASDDHTICLWDI 207
Score = 33.1 bits (74), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126
+F +D + ++D+R S H +A A ++ + + F L T
Sbjct: 242 LFGSVADDQKLMIWDTRSNNTSKPSHSVDAHTAEVNCLSFNPYSEFILA---------TG 292
Query: 127 SGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
S D+T+ +WD K + H I + P N IL S D +WDL
Sbjct: 293 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLNVWDL 347
>pdb|3CFS|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 43.1 bits (100), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 71/343 (20%), Positives = 122/343 (35%), Gaps = 85/343 (24%)
Query: 63 KNSHIFAVSDEDGYVSLFDSRRKL----PSFACHRENAEKARISDWVAHQNAIFDLCWIK 118
+N HI A V +FD + PS C+ + R+ HQ + L W
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD----LRLR---GHQKEGYGLSWNS 189
Query: 119 E-DTNILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGS 170
++L+AS D T+ +WD G ++ GH+ ++ + H + + S +
Sbjct: 190 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
D IWD R S+ K +HL V A ++ Y
Sbjct: 250 DDQKLMIWDTR---------------SNTTSKPSHL------VDAHTAEVNCLSFNPY-- 286
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
E +AT SA + V WD RNLK ++ H + H N L
Sbjct: 287 SEFILATGSA-DKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPH---------NETILA 336
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350
+S D R+ ++++ ++ + E +E P + G
Sbjct: 337 SSGTDRRLNVWDLSKIGE-----------EQSAEDAEDGPPELLFIHG------------ 373
Query: 351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
H +++ +W PNE I + S+D +++W +
Sbjct: 374 ----------GHTAKISDFSWNPNEPWVICSVSEDNIMQIWQM 406
Score = 35.8 bits (81), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 325 KSEICPNASHILSG---SSDGNAYVWQVNKPQADP-------IKLKSHDGEVTAVNWCPN 374
++ P HI++ SSD + + + + DP ++L+ H E ++W N
Sbjct: 131 RARYMPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 190
Query: 375 EAGKIVTSSDDYTVRLWSL 393
+G ++++SDD+TV LW +
Sbjct: 191 LSGHLLSASDDHTVCLWDI 209
>pdb|3MMY|A Chain A, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|C Chain C, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|E Chain E, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
pdb|3MMY|G Chain G, Structural And Functional Analysis Of The Interaction
Between The Nucleoporin Nup98 And The Mrna Export Factor
Rae1
Length = 368
Score = 42.7 bits (99), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 21/76 (27%), Positives = 37/76 (48%), Gaps = 2/76 (2%)
Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSL-CSHPTNSDI 165
H + D+CW + + + TAS D+T K+WD + + H +K++ N
Sbjct: 85 HTGPVLDVCWSDDGSKVFTASCDKTAKMWDLSSNQAI-QIAQHDAPVKTIHWIKAPNYSC 143
Query: 166 LVSGSRDGSFAIWDLR 181
+++GS D + WD R
Sbjct: 144 VMTGSWDKTLKFWDTR 159
>pdb|4GGC|A Chain A, Structural Analysis Of Human Cdc20 Supports Multi-Site
Degron Recognition By ApcC
Length = 318
Score = 42.4 bits (98), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 57/288 (19%), Positives = 107/288 (37%), Gaps = 53/288 (18%)
Query: 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170
I + WIKE + + +++WD +++K + H+ + SL NS IL SGS
Sbjct: 70 ISSVAWIKEGNYLAVGTSSAEVQLWDVQQQKRLRNMTSHSARVGSL---SWNSYILSSGS 126
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
R G D+R V+ S + + +
Sbjct: 127 RSGHIHHHDVRVA--------------------------EHHVATLSGHSQEVCGLRWAP 160
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290
D +A+ N +V W + A W ++ + + + ++ SN +
Sbjct: 161 DGRHLASGGNDN-LVNVWPS----APGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATG 215
Query: 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-----PNASHILSGS--SDGN 343
D I ++NV SG + + S++C P+ ++SG +
Sbjct: 216 GGTSDRHIRIWNVC----------SGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQ 265
Query: 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
+W+ A +LK H V ++ P+ A + +++ D T+RLW
Sbjct: 266 LVIWKY-PTMAKVAELKGHTSRVLSLTMSPDGA-TVASAAADETLRLW 311
Score = 38.9 bits (89), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/77 (28%), Positives = 38/77 (49%), Gaps = 10/77 (12%)
Query: 327 EIC-----PNASHILSGSSDGNAYVWQVNKPQADPIKLKS---HDGEVTAVNWCPNEAGK 378
E+C P+ H+ SG +D VW + + L++ H G V AV WCP ++
Sbjct: 152 EVCGLRWAPDGRHLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNV 211
Query: 379 IVT--SSDDYTVRLWSL 393
+ T + D +R+W++
Sbjct: 212 LATGGGTSDRHIRIWNV 228
Score = 28.5 bits (62), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 36/209 (17%), Positives = 81/209 (38%), Gaps = 35/209 (16%)
Query: 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121
S NS+I + G++ D R + ++ H + L W +
Sbjct: 116 SWNSYILSSGSRSGHIHHHDVR------------VAEHHVATLSGHSQEVCGLRWAPDGR 163
Query: 122 NILTASGDQTIKIWDAEKKKC----TGALMGHTGSIKSLCSHPTNSDILVS--GSRDGSF 175
++ + D + +W + + H G++K++ P S++L + G+ D
Sbjct: 164 HLASGGNDNLVNVWPSAPGEGGWVPLQTFTQHQGAVKAVAWCPWQSNVLATGGGTSDRHI 223
Query: 176 AIWDL---RCKSSPKSNCAESFVFSSAVVK---GAHLLSQSK----------RVSRRKAA 219
IW++ C S+ ++ + S K H +Q++ +V+ K
Sbjct: 224 RIWNVCSGACLSAVDAHSQVCSILWSPHYKELISGHGFAQNQLVIWKYPTMAKVAELKGH 283
Query: 220 SMSITSVLYLKDEVSIATASAVNSIVKFW 248
+ + S+ D ++A+A+A + ++ W
Sbjct: 284 TSRVLSLTMSPDGATVASAAA-DETLRLW 311
>pdb|2AQ5|A Chain A, Crystal Structure Of Murine Coronin-1
Length = 402
Score = 42.4 bits (98), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 106 AHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEK-------KKCTGALMGHTGSIKSLC 157
H + D+ W + N++ + S D T+ +W+ ++ L GHT + +
Sbjct: 79 GHTAPVLDIAWXPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 158 SHPTNSDILVSGSRDGSFAIWDL 180
HPT ++L+S D +WD+
Sbjct: 139 WHPTAQNVLLSAGXDNVILVWDV 161
Score = 32.0 bits (71), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 29/166 (17%), Positives = 62/166 (37%), Gaps = 32/166 (19%)
Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205
+ GHT + + P N +++ SGS D + +W+ + G
Sbjct: 77 VXGHTAPVLDIAWXPHNDNVIASGSEDCTVMVWE--------------------IPDGGL 116
Query: 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265
+L + V + + + V + ++ ++ ++++ WD A +T P
Sbjct: 117 VLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGXDNVILVWDVGTGAAVLTLG-PDVH 175
Query: 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 311
+ I S+ +G + SC D R+ V++ KG +
Sbjct: 176 PDT--------IYSVDWSRDGALICTSCRDKRV---RVIEPRKGTV 210
Score = 32.0 bits (71), Expect = 0.79, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 31/69 (44%), Gaps = 6/69 (8%)
Query: 331 NASHILSGSSDGNAYVWQVNK-----PQADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSD 384
N + I SGS D VW++ P +P I L+ H V V W P ++++
Sbjct: 93 NDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGX 152
Query: 385 DYTVRLWSL 393
D + +W +
Sbjct: 153 DNVILVWDV 161
>pdb|2XYI|A Chain A, Crystal Structure Of Nurf55 In Complex With A H4 Peptide
Length = 430
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWD--AEKKK-----CTGALMGHTGSIKSLC 157
HQ + L W + +L+AS D TI +WD A K+ GHT ++ +
Sbjct: 179 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 238
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
H + + S + D IWD R ++ K S V
Sbjct: 239 WHLLHESLFGSVADDQKLMIWDTRNNNTSKP---------------------SHTVDAHT 277
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
A ++ Y E +AT SA + V WD RNLK ++ H + + H
Sbjct: 278 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 332
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
N L +S D R++++++ ++ + E +E P +
Sbjct: 333 -------NETILASSGTDRRLHVWDLSKIGE-----------EQSTEDAEDGPPELLFIH 374
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
G H +++ +W PNE I + S+D +++W +
Sbjct: 375 GG----------------------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 408
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 105 VAHQNAIFDLCW-IKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHP 160
H + D+ W + ++ + + DQ + IWD K + + HT + L +P
Sbjct: 228 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 287
Query: 161 TNSDILVSGSRDGSFAIWDLR 181
+ IL +GS D + A+WDLR
Sbjct: 288 YSEFILATGSADKTVALWDLR 308
Score = 36.6 bits (83), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
++L+ H E ++W PN G ++++SDD+T+ LW +
Sbjct: 175 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 211
Score = 33.5 bits (75), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126
+F +D + ++D+R S H +A A ++ + + F L T
Sbjct: 246 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA---------TG 296
Query: 127 SGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
S D+T+ +WD K + H I + P N IL S D +WDL
Sbjct: 297 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 351
>pdb|3CFV|B Chain B, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
pdb|3CFV|A Chain A, Structural Basis Of The Interaction Of Rbap46RBAP48 WITH
Histone H4
Length = 414
Score = 42.0 bits (97), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 51/207 (24%), Positives = 80/207 (38%), Gaps = 43/207 (20%)
Query: 63 KNSHIFAVSDEDGYVSLFDSRRKL----PSFACHRENAEKARISDWVAHQNAIFDLCWIK 118
+N HI A V +FD + PS C+ + R+ HQ + L W
Sbjct: 137 QNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPD----LRLR---GHQKEGYGLSWNS 189
Query: 119 E-DTNILTASGDQTIKIWDAEKKKCTGALM-------GHTGSIKSLCSHPTNSDILVSGS 170
++L+AS D T+ +WD G ++ GH+ ++ + H + + S +
Sbjct: 190 NLSGHLLSASDDHTVCLWDINAGPKEGKIVDAKAIFTGHSAVVEDVAWHLLHESLFGSVA 249
Query: 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230
D IWD R S+ K +HL V A ++ Y
Sbjct: 250 DDQKLXIWDTR---------------SNTTSKPSHL------VDAHTAEVNCLSFNPY-- 286
Query: 231 DEVSIATASAVNSIVKFWDTRNLKAQI 257
E +AT SA + V WD RNLK ++
Sbjct: 287 SEFILATGSA-DKTVALWDLRNLKLKL 312
Score = 35.4 bits (80), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/79 (26%), Positives = 41/79 (51%), Gaps = 10/79 (12%)
Query: 325 KSEICPNASHILSG---SSDGNAYVWQVNKPQADP-------IKLKSHDGEVTAVNWCPN 374
++ P HI++ SSD + + + + DP ++L+ H E ++W N
Sbjct: 131 RARYXPQNPHIIATKTPSSDVLVFDYTKHPAKPDPSGECNPDLRLRGHQKEGYGLSWNSN 190
Query: 375 EAGKIVTSSDDYTVRLWSL 393
+G ++++SDD+TV LW +
Sbjct: 191 LSGHLLSASDDHTVCLWDI 209
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 31/65 (47%), Gaps = 1/65 (1%)
Query: 330 PNASHIL-SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTV 388
P + IL +GS+D +W + + +SH E+ V+W P+ + +S D +
Sbjct: 285 PYSEFILATGSADKTVALWDLRNLKLKLHTFESHKDEIFQVHWSPHNETILASSGTDRRL 344
Query: 389 RLWSL 393
+W L
Sbjct: 345 NVWDL 349
>pdb|2YBA|A Chain A, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YBA|B Chain B, Crystal Structure Of Nurf55 In Complex With Histone H3
pdb|2YB8|B Chain B, Crystal Structure Of Nurf55 In Complex With Su(Z)12
Length = 422
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWD--AEKKK-----CTGALMGHTGSIKSLC 157
HQ + L W + +L+AS D TI +WD A K+ GHT ++ +
Sbjct: 183 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 242
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
H + + S + D IWD R ++ K S V
Sbjct: 243 WHLLHESLFGSVADDQKLMIWDTRNNNTSKP---------------------SHTVDAHT 281
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
A ++ Y E +AT SA + V WD RNLK ++ H + + H
Sbjct: 282 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 336
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
N L +S D R++++++ ++ + E +E P +
Sbjct: 337 -------NETILASSGTDRRLHVWDLSKIGE-----------EQSTEDAEDGPPELLFIH 378
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
G H +++ +W PNE I + S+D +++W +
Sbjct: 379 GG----------------------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 412
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 105 VAHQNAIFDLCW-IKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHP 160
H + D+ W + ++ + + DQ + IWD K + + HT + L +P
Sbjct: 232 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 291
Query: 161 TNSDILVSGSRDGSFAIWDLR 181
+ IL +GS D + A+WDLR
Sbjct: 292 YSEFILATGSADKTVALWDLR 312
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
++L+ H E ++W PN G ++++SDD+T+ LW +
Sbjct: 179 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 215
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126
+F +D + ++D+R S H +A A ++ + + F L T
Sbjct: 250 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA---------TG 300
Query: 127 SGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
S D+T+ +WD K + H I + P N IL S D +WDL
Sbjct: 301 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 355
>pdb|3C99|A Chain A, Structural Basis Of Histone H4 Recognition By P55
pdb|3C9C|A Chain A, Structural Basis Of Histone H4 Recognition By P55
Length = 432
Score = 42.0 bits (97), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 61/296 (20%), Positives = 105/296 (35%), Gaps = 74/296 (25%)
Query: 106 AHQNAIFDLCWIKE-DTNILTASGDQTIKIWD--AEKKK-----CTGALMGHTGSIKSLC 157
HQ + L W + +L+AS D TI +WD A K+ GHT ++ +
Sbjct: 181 GHQKEGYGLSWNPNLNGYLLSASDDHTICLWDINATPKEHRVIDAKNIFTGHTAVVEDVA 240
Query: 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217
H + + S + D IWD R ++ K S V
Sbjct: 241 WHLLHESLFGSVADDQKLMIWDTRNNNTSKP---------------------SHTVDAHT 279
Query: 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277
A ++ Y E +AT SA + V WD RNLK ++ H + + H
Sbjct: 280 AEVNCLSFNPY--SEFILATGSA-DKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPH-- 334
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337
N L +S D R++++++ ++ + E +E P +
Sbjct: 335 -------NETILASSGTDRRLHVWDLSKIGE-----------EQSTEDAEDGPPELLFIH 376
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
G H +++ +W PNE I + S+D +++W +
Sbjct: 377 GG----------------------HTAKISDFSWNPNEPWIICSVSEDNIMQVWQM 410
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 39/81 (48%), Gaps = 4/81 (4%)
Query: 105 VAHQNAIFDLCW-IKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHP 160
H + D+ W + ++ + + DQ + IWD K + + HT + L +P
Sbjct: 230 TGHTAVVEDVAWHLLHESLFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNP 289
Query: 161 TNSDILVSGSRDGSFAIWDLR 181
+ IL +GS D + A+WDLR
Sbjct: 290 YSEFILATGSADKTVALWDLR 310
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 13/37 (35%), Positives = 25/37 (67%)
Query: 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393
++L+ H E ++W PN G ++++SDD+T+ LW +
Sbjct: 177 LRLRGHQKEGYGLSWNPNLNGYLLSASDDHTICLWDI 213
Score = 33.5 bits (75), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 28/115 (24%), Positives = 45/115 (39%), Gaps = 10/115 (8%)
Query: 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126
+F +D + ++D+R S H +A A ++ + + F L T
Sbjct: 248 LFGSVADDQKLMIWDTRNNNTSKPSHTVDAHTAEVNCLSFNPYSEFILA---------TG 298
Query: 127 SGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180
S D+T+ +WD K + H I + P N IL S D +WDL
Sbjct: 299 SADKTVALWDLRNLKLKLHSFESHKDEIFQVQWSPHNETILASSGTDRRLHVWDL 353
>pdb|1K8K|C Chain C, Crystal Structure Of Arp23 COMPLEX
pdb|1TYQ|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ATP AND
Calcium
pdb|1U2V|C Chain C, Crystal Structure Of Arp23 COMPLEX WITH BOUND ADP AND
Calcium
pdb|2P9I|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp And Crosslinked With Gluteraldehyde
pdb|2P9K|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Atp And Crosslinked With Glutaraldehyde
pdb|2P9L|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX
pdb|2P9N|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9P|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Adp
pdb|2P9S|C Chain C, Structure Of Bovine Arp23 COMPLEX CO-Crystallized With
AtpMG2+
pdb|2P9U|C Chain C, Crystal Structure Of Bovine Arp23 COMPLEX CO-Crystallized
With Amp-Pnp And Calcium
Length = 372
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 328 ICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYT 387
ICPN + GN +V QV++ LK H+G+VT V+W P ++ +IVT D
Sbjct: 25 ICPNNHEVHIYEKSGNKWV-QVHE-------LKEHNGQVTGVDWAP-DSNRIVTCGTDRN 75
Query: 388 VRLWSLEN 395
+W+L+
Sbjct: 76 AYVWTLKG 83
>pdb|3FM0|A Chain A, Crystal Structure Of Wd40 Protein Ciao1
Length = 345
Score = 41.6 bits (96), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 68/313 (21%), Positives = 119/313 (38%), Gaps = 61/313 (19%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIW--DAEKKKCTGALMGHTGSIKSLCSHPTNS 163
HQ + + W + +AS D T IW + + +C L GH +KS+ P+
Sbjct: 59 GHQRTVRKVAWSPCGNYLASASFDATTCIWKKNQDDFECVTTLEGHENEVKSVAWAPSG- 117
Query: 164 DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223
++L + SRD S +W++ E + V +H + +
Sbjct: 118 NLLATCSRDKSVWVWEVD----------EEDEYECVSVLNSH--------------TQDV 153
Query: 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283
V++ + +A+AS + DT L + W + E+ + SL+ D
Sbjct: 154 KHVVWHPSQELLASAS-------YDDTVKLYREEEDDWVCCATLEGHEST---VWSLAFD 203
Query: 284 SNGVFLTASCMDHR---IYLYNVLQLDKGPIQHFSG------CRIESFYVKS----EICP 330
+G L ASC D R I+ + ++G S C + F+ ++ C
Sbjct: 204 PSGQRL-ASCSDDRTVRIWRQYLPGNEQGVACSGSDPSWKCICTLSGFHSRTIYDIAWCQ 262
Query: 331 NASHILSGSSDGNAYVWQVNKPQADPIK---------LKSHDGEVTAVNWCPNEAGKIVT 381
+ + D V+Q P +DP + ++H +V V W P E G + +
Sbjct: 263 LTGALATACGDDAIRVFQ-EDPNSDPQQPTFSLTAHLHQAHSQDVNCVAWNPKEPGLLAS 321
Query: 382 SSDDYTVRLWSLE 394
SDD V W +
Sbjct: 322 CSDDGEVAFWKYQ 334
Score = 30.0 bits (66), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 35/147 (23%), Positives = 57/147 (38%), Gaps = 36/147 (24%)
Query: 43 TVEHHGEETPPLA-------VSFCKTSKNSHIFAVSDEDGY--VSLFDSRRKLPSFACHR 93
T+E H E +A ++ C K+ ++ V +ED Y VS+ +S
Sbjct: 100 TLEGHENEVKSVAWAPSGNLLATCSRDKSVWVWEVDEEDEYECVSVLNS----------- 148
Query: 94 ENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTG 151
H + + W + +AS D T+K++ E+ C L GH
Sbjct: 149 -------------HTQDVKHVVWHPSQELLASASYDDTVKLYREEEDDWVCCATLEGHES 195
Query: 152 SIKSLCSHPTNSDILVSGSRDGSFAIW 178
++ SL P+ L S S D + IW
Sbjct: 196 TVWSLAFDPSGQR-LASCSDDRTVRIW 221
>pdb|3DXK|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0944636
pdb|3DXM|C Chain C, Structure Of Bos Taurus Arp23 COMPLEX WITH BOUND INHIBITOR
Ck0993548
pdb|3RSE|C Chain C, Structural And Biochemical Characterization Of Two Binding
Sites For Nucleation Promoting Factor Wasp-Vca On Arp23
COMPLEX
pdb|3UKR|C Chain C, Crystal Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-666
pdb|3UKU|C Chain C, Structure Of Arp2/3 Complex With Bound Inhibitor Ck-869
pdb|3ULE|C Chain C, Structure Of Bos Taurus Arp2/3 Complex With Bound
Inhibitor Ck-869 And Atp
Length = 372
Score = 41.2 bits (95), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
Query: 328 ICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYT 387
ICPN + GN +V QV++ LK H+G+VT ++W P ++ +IVT D
Sbjct: 25 ICPNNHEVHIYEKSGNKWV-QVHE-------LKEHNGQVTGIDWAP-DSNRIVTCGTDRN 75
Query: 388 VRLWSLEN 395
+W+L+
Sbjct: 76 AYVWTLKG 83
>pdb|2B4E|A Chain A, Crystal Structure Of Murine Coronin-1: Monoclinic Form
Length = 402
Score = 40.8 bits (94), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 20/83 (24%), Positives = 38/83 (45%), Gaps = 8/83 (9%)
Query: 106 AHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEK-------KKCTGALMGHTGSIKSLC 157
H + D+ W + N++ + S D T+ +W+ ++ L GHT + +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVA 138
Query: 158 SHPTNSDILVSGSRDGSFAIWDL 180
HPT ++L+S D +WD+
Sbjct: 139 WHPTAQNVLLSAGCDNVILVWDV 161
Score = 32.7 bits (73), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 33/72 (45%), Gaps = 7/72 (9%)
Query: 329 CP-NASHILSGSSDGNAYVWQVNK-----PQADP-IKLKSHDGEVTAVNWCPNEAGKIVT 381
CP N + I SGS D VW++ P +P I L+ H V V W P +++
Sbjct: 90 CPHNDNVIASGSEDCTVMVWEIPDGGLVLPLREPVITLEGHTKRVGIVAWHPTAQNVLLS 149
Query: 382 SSDDYTVRLWSL 393
+ D + +W +
Sbjct: 150 AGCDNVILVWDV 161
Score = 32.0 bits (71), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 29/164 (17%), Positives = 61/164 (37%), Gaps = 32/164 (19%)
Query: 148 GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207
GHT + + P N +++ SGS D + +W+ + G +L
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWE--------------------IPDGGLVL 118
Query: 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS 267
+ V + + + V + ++ ++ ++++ WD A +T P
Sbjct: 119 PLREPVITLEGHTKRVGIVAWHPTAQNVLLSAGCDNVILVWDVGTGAAVLTLG-PDVHPD 177
Query: 268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 311
+ I S+ +G + SC D R+ V++ KG +
Sbjct: 178 T--------IYSVDWSRDGALICTSCRDKRV---RVIEPRKGTV 210
Score = 30.0 bits (66), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 11/35 (31%), Positives = 18/35 (51%)
Query: 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
H V + WCP+ I + S+D TV +W + +
Sbjct: 79 GHTAPVLDIAWCPHNDNVIASGSEDCTVMVWEIPD 113
>pdb|4GQB|B Chain B, Crystal Structure Of The Human Prmt5:mep50 Complex
Length = 344
Score = 40.4 bits (93), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/76 (22%), Positives = 33/76 (43%)
Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDIL 166
H + + + + T ++ S D IK+WD ++ + H + + + P +
Sbjct: 126 HDDIVSTVSVLSSGTQAVSGSKDICIKVWDLAQQVVLSSYRAHAAQVTCVAASPHKDSVF 185
Query: 167 VSGSRDGSFAIWDLRC 182
+S S D +WD RC
Sbjct: 186 LSCSEDNRILLWDTRC 201
>pdb|2HES|X Chain X, Cytosolic Iron-sulphur Assembly Protein- 1
Length = 330
Score = 40.0 bits (92), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/77 (27%), Positives = 39/77 (50%), Gaps = 5/77 (6%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWD----AEKKKCTGALMGHTGSIKSLCSHPT 161
H+N + + W + + T S D+++ IW+ E+ +C L H+ +K + HP+
Sbjct: 105 GHENEVKGVAWSNDGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPS 164
Query: 162 NSDILVSGSRDGSFAIW 178
+ +L S S D + IW
Sbjct: 165 EA-LLASSSYDDTVRIW 180
Score = 28.9 bits (63), Expect = 6.8, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 46/112 (41%), Gaps = 8/112 (7%)
Query: 75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKI 134
G ++ + RK+ + ++ + D AH+ AI + W + + S D T+ I
Sbjct: 25 GILATGSTDRKIKLVSVKYDDFTLIDVLDETAHKKAIRSVAWRPHTSLLAAGSFDSTVSI 84
Query: 135 WDAEKK-------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
W E+ + GH +K + + + L + SRD S IW+
Sbjct: 85 WAKEESADRTFEMDLLAIIEGHENEVKGV-AWSNDGYYLATCSRDKSVWIWE 135
Score = 28.9 bits (63), Expect = 6.9, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 4/64 (6%)
Query: 331 NASHILSGSSDGNAYVWQVNK--PQADPIK-LKSHDGEVTAVNWCPNEAGKIVTSSDDYT 387
+ ++ + S D + ++W+ ++ + + I L+ H +V V W P+EA + +SS D T
Sbjct: 118 DGYYLATCSRDKSVWIWETDESGEEYECISVLQEHSQDVKHVIWHPSEA-LLASSSYDDT 176
Query: 388 VRLW 391
VR+W
Sbjct: 177 VRIW 180
>pdb|3JRO|A Chain A, Nup84-Nup145c-Sec13 Edge Element Of The Npc Lattice
Length = 753
Score = 39.7 bits (91), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSL-CSHPTN 162
AH I D + T S D+TIKI++ E + K L GH G + + +HP
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 163 SDILVSGSRDGSFAIW 178
IL S S DG IW
Sbjct: 67 GTILASCSYDGKVLIW 82
Score = 28.5 bits (62), Expect = 9.2, Method: Compositional matrix adjust.
Identities = 20/59 (33%), Positives = 28/59 (47%), Gaps = 4/59 (6%)
Query: 330 PNASHIL-SGSSDGNAYVWQVNKPQADPIKLKS-HDGEVTAVNWCPNEAGK--IVTSSD 384
P IL S S DG +W+ + I + + H V +V W P+E G +V SSD
Sbjct: 64 PKFGTILASCSYDGKVLIWKEENGRWSQIAVHAVHSASVNSVQWAPHEYGPLLLVASSD 122
>pdb|4I79|A Chain A, Crystal Structure Of Human Nup43
pdb|4I79|B Chain B, Crystal Structure Of Human Nup43
Length = 399
Score = 39.3 bits (90), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 37/149 (24%), Positives = 63/149 (42%), Gaps = 20/149 (13%)
Query: 46 HHGEETPPLAVSFCK--TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISD 103
H G +P + + C N I V EDG ++LF + K E R D
Sbjct: 140 HTGPGSPSYSSAPCTGVVCNNPEIVTVG-EDGRINLFRADHK-----------EAVRTID 187
Query: 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA----LMGHTGSIKSLCSH 159
A + + + +++ ILT + +KIWD ++ + L G + + H
Sbjct: 188 -NADSSTLHAVTFLRT-PEILTVNSIGQLKIWDFRQQGNEPSQILSLTGDRVPLHCVDRH 245
Query: 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKS 188
P ++ +G +DG +IWD+R + P S
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVS 274
Score = 35.0 bits (79), Expect = 0.093, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 33/63 (52%), Gaps = 1/63 (1%)
Query: 330 PNASHIL-SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTV 388
PN H++ +G DG +W V + LK+H+ E+ V++ P+ + T S+D ++
Sbjct: 246 PNQQHVVATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSL 305
Query: 389 RLW 391
W
Sbjct: 306 WHW 308
Score = 32.7 bits (73), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
+ T D + IWD + +L+ H + + HP+N + L + S DGS WD
Sbjct: 252 VATGGQDGMLSIWDVRQGTMPVSLLKAHEAEMWEVHFHPSNPEHLFTCSEDGSLWHWD 309
>pdb|2XZM|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 1
pdb|2XZN|R Chain R, Crystal Structure Of The Eukaryotic 40s Ribosomal Subunit
In Complex With Initiation Factor 1. This File Contains
The 40s Subunit And Initiation Factor For Molecule 2
Length = 343
Score = 38.5 bits (88), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 41/82 (50%), Gaps = 3/82 (3%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H + + DL +E+ +++S D+T+++WD +GH + S+ P N I
Sbjct: 74 GHNHFVSDLALSQENCFAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQI 133
Query: 166 LVSGSRDGSFAIWDL--RCKSS 185
L +G+ + +W++ CK S
Sbjct: 134 LSAGA-EREIKLWNILGECKFS 154
Score = 34.7 bits (78), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 53/237 (22%), Positives = 93/237 (39%), Gaps = 44/237 (18%)
Query: 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG-------ALMGHTGSIK 154
SDWV A F ++ +++ S D+T+ IW +++ G AL GH +
Sbjct: 21 SDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLYEEEQNGYFGIPHKALTGHNHFVS 80
Query: 155 SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA-ESFVFSSAV------------- 200
L N +S S D + +WDLR ++ K +S V+S A
Sbjct: 81 DLALSQENC-FAISSSWDKTLRLWDLRTGTTYKRFVGHQSEVYSVAFSPDNRQILSAGAE 139
Query: 201 --VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKF-----WDTR-- 251
+K ++L + K S K S ++ + +A+ V + WD R
Sbjct: 140 REIKLWNILGECKFSSAEKENHSDWVSC--VRYSPIMKSANKVQPFAPYFASVGWDGRLK 197
Query: 252 --NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL 306
N QI + ES+ ++ LS NG ++ D ++ ++++L L
Sbjct: 198 VWNTNFQIRYTFKAHESN---------VNHLSISPNGKYIATGGKDKKLLIWDILNL 245
Score = 32.3 bits (72), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 78/351 (22%), Positives = 127/351 (36%), Gaps = 79/351 (22%)
Query: 144 GALMGHTGSIKSLC---SHPTNSD--ILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198
G L GH+ + S+ S N D +L+SGSRD + IW L + +
Sbjct: 15 GILEGHSDWVTSIVAGFSQKENEDSPVLISGSRDKTVMIWKLY----EEEQNGYFGIPHK 70
Query: 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258
A+ H +S L L E A +S+ + ++ WD R
Sbjct: 71 ALTGHNHFVSD-----------------LALSQENCFAISSSWDKTLRLWDLRTGTTYKR 113
Query: 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL------QLDKGPIQ 312
+E S + S D+ + ++ + I L+N+L +K
Sbjct: 114 FVGHQSEVYSV---------AFSPDNRQIL--SAGAEREIKLWNILGECKFSSAEKENHS 162
Query: 313 HFSGCRIESFYVKS--EICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVN 370
+ C S +KS ++ P A + S DG VW N K+H+ V ++
Sbjct: 163 DWVSCVRYSPIMKSANKVQPFAPYFASVGWDGRLKVWNTNFQIR--YTFKAHESNVNHLS 220
Query: 371 WCPNEAGK-IVTSSDDYTVRLWSLENXXXXXXXXXXXXXXXVMAIPSTE------CRKLF 423
PN GK I T D + +W + N + P E ++
Sbjct: 221 ISPN--GKYIATGGKDKKLLIWDILN----------------LTYPQREFDAGSTINQIA 262
Query: 424 MNGEPGWLAKGSDRSYNSDDVLNQINSSDP----KNMPIIRTPEAQKKKIP 470
N + W+A G+D+ +++ Q S P + PI + E QK K P
Sbjct: 263 FNPKLQWVAVGTDQGVKIFNLMTQ--SKAPVCTIEAEPITKA-EGQKGKNP 310
>pdb|3ODT|A Chain A, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
pdb|3ODT|B Chain B, Crystal Structure Of Wd40 Beta Propeller Domain Of Doa1
Length = 313
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 39/109 (35%), Positives = 56/109 (51%), Gaps = 12/109 (11%)
Query: 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347
FLTAS D I L+ Q DK I+ FSG I + V+ + H +S S+DG +
Sbjct: 158 FLTASA-DKTIKLW---QNDK-VIKTFSG--IHNDVVRHLAVVDDGHFISCSNDG--LIK 208
Query: 348 QVNKPQADPIK-LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395
V+ D ++ + H+ V + PN G IV+ +D TVR+WS EN
Sbjct: 209 LVDXHTGDVLRTYEGHESFVYCIKLLPN--GDIVSCGEDRTVRIWSKEN 255
>pdb|4G56|B Chain B, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
pdb|4G56|D Chain D, Crystal Structure Of Full Length Prmt5/mep50 Complexes
From Xenopus Laevis
Length = 357
Score = 38.5 bits (88), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 17/75 (22%), Positives = 33/75 (44%)
Query: 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDIL 166
H + + L + T ++ D ++K+WD +K + H+ + + + P I
Sbjct: 138 HDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHSSEVNCVAACPGKDTIF 197
Query: 167 VSGSRDGSFAIWDLR 181
+S DG +WD R
Sbjct: 198 LSCGEDGRILLWDTR 212
Score = 32.7 bits (73), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 28/93 (30%), Positives = 45/93 (48%), Gaps = 6/93 (6%)
Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT----GALMGHTGSIKSLCSHP 160
V + + D+ W+ E IL AS +++W+ +K+ A H +K+L S
Sbjct: 91 VQTEAGVTDVAWVSE-KGILVASDSGAVELWEILEKESLLVNKFAKYEHDDIVKTL-SVF 148
Query: 161 TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193
++ VSG +D S +WDL K+ KS A S
Sbjct: 149 SDGTQAVSGGKDFSVKVWDLSQKAVLKSYNAHS 181
Score = 29.3 bits (64), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 18/94 (19%), Positives = 41/94 (43%), Gaps = 1/94 (1%)
Query: 298 IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357
+ L+ +L+ + + F+ + + + + +SG D + VW +++ +A
Sbjct: 117 VELWEILEKESLLVNKFAKYEHDDIVKTLSVFSDGTQAVSGGKDFSVKVWDLSQ-KAVLK 175
Query: 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391
+H EV V CP + ++ +D + LW
Sbjct: 176 SYNAHSSEVNCVAACPGKDTIFLSCGEDGRILLW 209
>pdb|3JRP|A Chain A, Sec13 With Nup145c (Aa109-179) Insertion Blade
Length = 379
Score = 38.1 bits (87), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSL-CSHPTN 162
AH I D + T S D+TIKI++ E + K L GH G + + +HP
Sbjct: 9 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 68
Query: 163 SDILVSGSRDGSFAIW 178
IL S S DG IW
Sbjct: 69 GTILASCSYDGKVLIW 84
>pdb|2PM9|B Chain B, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 297
Score = 38.1 bits (87), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSL-CSHPTN 162
AH I D + T S D+TIKI++ E + K L GH G + + +HP
Sbjct: 7 AHNEMIHDAVMDYYGKRMATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 163 SDILVSGSRDGSFAIW 178
IL S S DG IW
Sbjct: 67 GTILASCSYDGKVMIW 82
>pdb|2PM6|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|2PM6|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Native Version
pdb|3IKO|A Chain A, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|D Chain D, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3IKO|G Chain G, Crystal Structure Of The Heterotrimeric
Sec13-Nup145c-Nup84 Nucleoporin Complex
pdb|3MZK|A Chain A, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZK|D Chain D, Sec13SEC16 COMPLEX, S.CEREVISIAE
pdb|3MZL|A Chain A, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|C Chain C, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|E Chain E, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
pdb|3MZL|G Chain G, Sec13SEC31 EDGE ELEMENT, LOOP DELETION MUTANT
Length = 297
Score = 37.7 bits (86), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 35/76 (46%), Gaps = 3/76 (3%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSL-CSHPTN 162
AH I D + T S D+TIKI++ E + K L GH G + + +HP
Sbjct: 7 AHNELIHDAVLDYYGKRLATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 163 SDILVSGSRDGSFAIW 178
IL S S DG IW
Sbjct: 67 GTILASCSYDGKVLIW 82
>pdb|4A11|B Chain B, Structure Of The Hsddb1-Hscsa Complex
Length = 408
Score = 37.4 bits (85), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 26/100 (26%), Positives = 45/100 (45%), Gaps = 5/100 (5%)
Query: 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRK---LPSFACHRENAEKARISD 103
G LAVS+ + + +I A + D V L+D RR L + H +A S
Sbjct: 183 QGHRQEILAVSW--SPRYDYILATASADSRVKLWDVRRASGCLITLDQHNGKKSQAVESA 240
Query: 104 WVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143
AH + LC+ + ++LT D +++W++ + T
Sbjct: 241 NTAHNGKVNGLCFTSDGLHLLTVGTDNRMRLWNSSNGENT 280
Score = 36.2 bits (82), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 56/246 (22%), Positives = 90/246 (36%), Gaps = 72/246 (29%)
Query: 149 HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208
H G I +L P ++SG DG ++DL S +S+ AV
Sbjct: 42 HGGGINTLDIEPVEGRYMLSGGSDGVIVLYDLENSSR------QSYYTCKAVCSIGRDHP 95
Query: 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS 268
R S+ +V + + + T+S+ + +K WDT L+ A+ +
Sbjct: 96 DVHR--------YSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQT--------ADVFN 139
Query: 269 AKETRL-HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE 327
+ET H +S +S T C+ V +GP +++ +KS
Sbjct: 140 FEETVYSHHMSPVS--------TKHCL--------VAVGTRGP-------KVQLCDLKSG 176
Query: 328 ICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYT 387
C SHIL G H E+ AV+W P + T+S D
Sbjct: 177 SC---SHILQG-----------------------HRQEILAVSWSPRYDYILATASADSR 210
Query: 388 VRLWSL 393
V+LW +
Sbjct: 211 VKLWDV 216
Score = 32.3 bits (72), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 45/205 (21%), Positives = 90/205 (43%), Gaps = 36/205 (17%)
Query: 106 AHQNAIFDLCWIKEDTNILTASG-DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD 164
H+ ++ + W DT + T+S D+T+K+WD + T + ++ S P ++
Sbjct: 97 VHRYSVETVQWYPHDTGMFTSSSFDKTLKVWDTNTLQ-TADVFNFEETVYSHHMSPVSTK 155
Query: 165 --ILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222
++ G+R + DL+ S S +++G R++ ++S
Sbjct: 156 HCLVAVGTRGPKVQLCDLKSGS------------CSHILQG----------HRQEILAVS 193
Query: 223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH----AESSSAKETRLHG-I 277
+ + + +ATASA +S VK WD R + H +++ + T +G +
Sbjct: 194 WSP----RYDYILATASA-DSRVKLWDVRRASGCLITLDQHNGKKSQAVESANTAHNGKV 248
Query: 278 SSLSQDSNGVFLTASCMDHRIYLYN 302
+ L S+G+ L D+R+ L+N
Sbjct: 249 NGLCFTSDGLHLLTVGTDNRMRLWN 273
>pdb|2PM7|B Chain B, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
pdb|2PM7|D Chain D, Crystal Structure Of Yeast Sec1331 EDGE ELEMENT OF THE
Copii Vesicular Coat, Selenomethionine Version
Length = 297
Score = 36.6 bits (83), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 27/76 (35%), Positives = 34/76 (44%), Gaps = 3/76 (3%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSL-CSHPTN 162
AH I D T S D+TIKI++ E + K L GH G + + +HP
Sbjct: 7 AHNEXIHDAVXDYYGKRXATCSSDKTIKIFEVEGETHKLIDTLTGHEGPVWRVDWAHPKF 66
Query: 163 SDILVSGSRDGSFAIW 178
IL S S DG IW
Sbjct: 67 GTILASCSYDGKVXIW 82
>pdb|1R5M|A Chain A, Crystal Structure Of The C-Terminal Wd40 Domain Of Sif2
Length = 425
Score = 36.6 bits (83), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 25/85 (29%), Positives = 38/85 (44%), Gaps = 2/85 (2%)
Query: 97 EKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSL 156
EK + H I L + + +L+AS D T++IW GH+ SI S
Sbjct: 236 EKTPTGKLIGHHGPISVLEFNDTNKLLLSASDDGTLRIWHGGNGNSQNCFYGHSQSIVS- 294
Query: 157 CSHPTNSDILVSGSRDGSFAIWDLR 181
+ D ++S S DGS +W L+
Sbjct: 295 -ASWVGDDKVISCSMDGSVRLWSLK 318
Score = 36.6 bits (83), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 22/66 (33%), Positives = 35/66 (53%), Gaps = 2/66 (3%)
Query: 113 DLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD 172
D+ W+ +D ++ I ++ +K TG L+GH G I L + TN +L+S S D
Sbjct: 211 DVEWVDDDKFVIPGP-KGAIFVYQITEKTPTGKLIGHHGPISVLEFNDTNK-LLLSASDD 268
Query: 173 GSFAIW 178
G+ IW
Sbjct: 269 GTLRIW 274
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/60 (28%), Positives = 30/60 (50%), Gaps = 3/60 (5%)
Query: 335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394
+LS S DG +W + H + + +W ++ K+++ S D +VRLWSL+
Sbjct: 262 LLSASDDGTLRIWHGGNGNSQNC-FYGHSQSIVSASWVGDD--KVISCSMDGSVRLWSLK 318
>pdb|3JPX|A Chain A, Eed: A Novel Histone Trimethyllysine Binder Within The
Eed-Ezh2 Polycomb Complex
pdb|3JZG|A Chain A, Structure Of Eed In Complex With H3k27me3
pdb|3JZH|A Chain A, Eed-H3k79me3
Length = 402
Score = 36.2 bits (82), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 85 KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----ILTASGDQ-TIKIWDAEK 139
++ + CH + + S A + F C D+N +L +G + I+I +
Sbjct: 81 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 140
Query: 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
+C +GH +I L HP + ++L+S S+D + +W+++
Sbjct: 141 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 182
>pdb|3I2N|A Chain A, Crystal Structure Of Wd40 Repeats Protein Wdr92
Length = 357
Score = 36.2 bits (82), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 51/255 (20%), Positives = 100/255 (39%), Gaps = 68/255 (26%)
Query: 166 LVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225
+V+GSRDG+ +WD R K P +N V+G ++R +++ +
Sbjct: 132 IVTGSRDGTVKVWDPRQKDDPVANMEP--------VQGE---------NKRDCWTVAFGN 174
Query: 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL-HGISSLSQDS 284
E + A N +K +D RN+ + W ET + +G+ SL D
Sbjct: 175 A--YNQEERVVCAGYDNGDIKLFDLRNMALR----W---------ETNIKNGVCSLEFDR 219
Query: 285 NGVF---LTASCMDHRIYLYNVLQLDKGPIQHFSG----CRIESFYVKSEICPNASHILS 337
+ L A+ ++ + +++++ + P + F+ + + + N L+
Sbjct: 220 KDISMNKLVATSLEGKFHVFDMRT--QHPTKGFASVSEKAHKSTVWQVRHLPQNRELFLT 277
Query: 338 GSSDGNAYVWQVNKPQADPIKLKSHDGE----------------------VTAVNWCPNE 375
G ++W+ PI+ D E +++++W P++
Sbjct: 278 AGGAGGLHLWKYEY----PIQRSKKDSEGIEMGVAGSVSLLQNVTLSTQPISSLDWSPDK 333
Query: 376 AGKIVTSSDDYTVRL 390
G V SS D TVR+
Sbjct: 334 RGLCVCSSFDQTVRV 348
Score = 30.4 bits (67), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 5/63 (7%)
Query: 334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA-----VNWCPNEAGKIVTSSDDYTV 388
++ +G GN ++W + P+ +K H + A A +IVT S D TV
Sbjct: 82 YLATGDFGGNLHIWNLEAPEMPVYSVKGHKEIINAIDGIGGLGIGEGAPEIVTGSRDGTV 141
Query: 389 RLW 391
++W
Sbjct: 142 KVW 144
>pdb|2QXV|A Chain A, Structural Basis Of Ezh2 Recognition By Eed
Length = 361
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 85 KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----ILTASGDQ-TIKIWDAEK 139
++ + CH + + S A + F C D+N +L +G + I+I +
Sbjct: 40 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 99
Query: 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
+C +GH +I L HP + ++L+S S+D + +W+++
Sbjct: 100 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 141
>pdb|3JZN|A Chain A, Structure Of Eed In Apo Form
pdb|3K26|A Chain A, Complex Structure Of Eed And Trimethylated H3k4
pdb|3K27|A Chain A, Complex Structure Of Eed And Trimethylated H3k9
Length = 366
Score = 35.8 bits (81), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 85 KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----ILTASGDQ-TIKIWDAEK 139
++ + CH + + S A + F C D+N +L +G + I+I +
Sbjct: 45 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 104
Query: 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
+C +GH +I L HP + ++L+S S+D + +W+++
Sbjct: 105 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 146
>pdb|3IIW|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k27 Peptide
Length = 365
Score = 35.8 bits (81), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 85 KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----ILTASGDQ-TIKIWDAEK 139
++ + CH + + S A + F C D+N +L +G + I+I +
Sbjct: 44 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 103
Query: 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
+C +GH +I L HP + ++L+S S+D + +W+++
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
>pdb|3IIY|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H1k26 Peptide
pdb|3IJ0|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H3k9 Peptide
pdb|3IJ1|A Chain A, Crystal Structure Of Eed In Complex With A Trimethylated
Histone H4k20 Peptide
pdb|3IJC|A Chain A, Crystal Structure Of Eed In Complex With Ndsb-195
Length = 365
Score = 35.8 bits (81), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/102 (23%), Positives = 49/102 (48%), Gaps = 5/102 (4%)
Query: 85 KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----ILTASGDQ-TIKIWDAEK 139
++ + CH + + S A + F C D+N +L +G + I+I +
Sbjct: 44 RVTLYECHSQGEIRLLQSYVDADADENFYTCAWTYDSNTSHPLLAVAGSRGIIRIINPIT 103
Query: 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181
+C +GH +I L HP + ++L+S S+D + +W+++
Sbjct: 104 MQCIKHYVGHGNAINELKFHPRDPNLLLSVSKDHALRLWNIQ 145
>pdb|3EWE|A Chain A, Crystal Structure Of The Nup85SEH1 COMPLEX
pdb|3EWE|C Chain C, Crystal Structure Of The Nup85SEH1 COMPLEX
Length = 349
Score = 35.4 bits (80), Expect = 0.068, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 334 HILSGSSDGNAYVWQVNKPQAD---PIKLKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVR 389
H+ + SSD + V++++K ++ ++HD + A++W E G+I+ S S D TV+
Sbjct: 23 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 82
Query: 390 LW 391
LW
Sbjct: 83 LW 84
Score = 33.5 bits (75), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 138/337 (40%), Gaps = 49/337 (14%)
Query: 76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN--ILTASGDQTIK 133
+V+ S + + F ++ + W AH ++I + W + I +AS D+T+K
Sbjct: 23 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 82
Query: 134 IW--DAEKKKCTG-------ALMGHTGSIKSLCSHPTNSDI-LVSGSRDGSFAIWDLRCK 183
+W D ++++C+G L GS+ S+ P + + L DG ++D
Sbjct: 83 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 142
Query: 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS 243
S +S S + ++ HL S +S + +++++ SA+
Sbjct: 143 SDLRSWTLTSEMKVLSIPPANHLQSD---------FCLSWCPSRFSPEKLAV---SALEQ 190
Query: 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV 303
+ + ++ K + P +S + I Q + C D RI ++ +
Sbjct: 191 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ-----LIATGCKDGRIRIFKI 245
Query: 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHI---LSGSSDGNAYVWQVNKPQAD-PIKL 359
+ S E S + N++ + G SD N + + Q++ ++L
Sbjct: 246 -------TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTE--EKAELQSNLQVEL 296
Query: 360 KS----HDGEVTAVNWCPNEAGKIVTSS-DDYTVRLW 391
S H+GEV +V+W N G I++S+ DD VRLW
Sbjct: 297 LSEHDDHNGEVWSVSW--NLTGTILSSAGDDGKVRLW 331
>pdb|3F3F|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3F|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21
pdb|3F3G|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
pdb|3F3G|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P212121
Length = 351
Score = 35.4 bits (80), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 334 HILSGSSDGNAYVWQVNKPQAD---PIKLKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVR 389
H+ + SSD + V++++K ++ ++HD + A++W E G+I+ S S D TV+
Sbjct: 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 390 LW 391
LW
Sbjct: 85 LW 86
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 138/337 (40%), Gaps = 49/337 (14%)
Query: 76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN--ILTASGDQTIK 133
+V+ S + + F ++ + W AH ++I + W + I +AS D+T+K
Sbjct: 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 134 IW--DAEKKKCTG-------ALMGHTGSIKSLCSHPTNSDI-LVSGSRDGSFAIWDLRCK 183
+W D ++++C+G L GS+ S+ P + + L DG ++D
Sbjct: 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144
Query: 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS 243
S +S S + ++ HL S +S + +++++ SA+
Sbjct: 145 SDLRSWTLTSEMKVLSIPPANHLQSD---------FCLSWCPSRFSPEKLAV---SALEQ 192
Query: 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV 303
+ + ++ K + P +S + I Q + C D RI ++ +
Sbjct: 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ-----LIATGCKDGRIRIFKI 247
Query: 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHI---LSGSSDGNAYVWQVNKPQAD-PIKL 359
+ S E S + N++ + G SD N + + Q++ ++L
Sbjct: 248 -------TEKLSPLASEESLTNSNMFDNSADVDMDAQGRSDSNTE--EKAELQSNLQVEL 298
Query: 360 KS----HDGEVTAVNWCPNEAGKIVTSS-DDYTVRLW 391
S H+GEV +V+W N G I++S+ DD VRLW
Sbjct: 299 LSEHDDHNGEVWSVSW--NLTGTILSSAGDDGKVRLW 333
>pdb|3F3P|A Chain A, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|B Chain B, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|E Chain E, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|F Chain F, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|I Chain I, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
pdb|3F3P|J Chain J, Crystal Structure Of The Nucleoporin Pair Nup85-Seh1,
Space Group P21212
Length = 351
Score = 35.4 bits (80), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 20/62 (32%), Positives = 37/62 (59%), Gaps = 4/62 (6%)
Query: 334 HILSGSSDGNAYVWQVNKPQAD---PIKLKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVR 389
H+ + SSD + V++++K ++ ++HD + A++W E G+I+ S S D TV+
Sbjct: 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 390 LW 391
LW
Sbjct: 85 LW 86
Score = 32.0 bits (71), Expect = 0.91, Method: Compositional matrix adjust.
Identities = 72/337 (21%), Positives = 136/337 (40%), Gaps = 49/337 (14%)
Query: 76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN--ILTASGDQTIK 133
+V+ S + + F ++ + W AH ++I + W + I +AS D+T+K
Sbjct: 25 HVATCSSDQHIKVFKLDKDTSNWELSDSWRAHDSSIVAIDWASPEYGRIIASASYDKTVK 84
Query: 134 IW--DAEKKKCTG-------ALMGHTGSIKSLCSHPTNSDI-LVSGSRDGSFAIWDLRCK 183
+W D ++++C+G L GS+ S+ P + + L DG ++D
Sbjct: 85 LWEEDPDQEECSGRRWNKLCTLNDSKGSLYSVKFAPAHLGLKLACLGNDGILRLYDALEP 144
Query: 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS 243
S +S S ++ HL S +S + +++++ SA+
Sbjct: 145 SDLRSWTLTSEXKVLSIPPANHLQSD---------FCLSWCPSRFSPEKLAV---SALEQ 192
Query: 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV 303
+ + ++ K + P +S + I Q + C D RI ++ +
Sbjct: 193 AIIYQRGKDGKLHVAAKLPGHKSLIRSISWAPSIGRWYQ-----LIATGCKDGRIRIFKI 247
Query: 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHI---LSGSSDGNAYVWQVNKPQAD-PIKL 359
+ S E S N++ + G SD N + + Q++ ++L
Sbjct: 248 -------TEKLSPLASEESLTNSNXFDNSADVDXDAQGRSDSNTE--EKAELQSNLQVEL 298
Query: 360 KS----HDGEVTAVNWCPNEAGKIVTSS-DDYTVRLW 391
S H+GEV +V+W N G I++S+ DD VRLW
Sbjct: 299 LSEHDDHNGEVWSVSW--NLTGTILSSAGDDGKVRLW 333
>pdb|3ZWL|B Chain B, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
pdb|3ZWL|D Chain D, Structure Of Eukaryotic Translation Initiation Factor
Eif3i Complex With Eif3b C-Terminus (655-700)
Length = 369
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 24/86 (27%), Positives = 43/86 (50%), Gaps = 4/86 (4%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDI 165
H+ + + + KE + + S D + +W + + G L GHTG+I S+ +
Sbjct: 30 GHERPLTQVKYNKEGDLLFSCSKDSSASVWYSLNGERLGTLDGHTGTIWSI-DVDCFTKY 88
Query: 166 LVSGSRDGSFAIWDL---RCKSSPKS 188
V+GS D S +WD+ +C ++ KS
Sbjct: 89 CVTGSADYSIKLWDVSNGQCVATWKS 114
>pdb|4AEZ|A Chain A, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|D Chain D, Crystal Structure Of Mitotic Checkpoint Complex
pdb|4AEZ|G Chain G, Crystal Structure Of Mitotic Checkpoint Complex
Length = 401
Score = 33.9 bits (76), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 25/120 (20%), Positives = 45/120 (37%), Gaps = 14/120 (11%)
Query: 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121
S N H+ + G + D R A H+ I H + + L W +
Sbjct: 183 SWNRHVLSSGSRSGAIHHHDVR-----IANHQ-------IGTLQGHSSEVCGLAWRSDGL 230
Query: 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVS--GSRDGSFAIWD 179
+ + D ++IWDA H ++K++ P S++L + G+ D W+
Sbjct: 231 QLASGGNDNVVQIWDARSSIPKFTKTNHNAAVKAVAWCPWQSNLLATGGGTMDKQIHFWN 290
>pdb|3OW8|A Chain A, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|B Chain B, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|C Chain C, Crystal Structure Of The Wd Repeat-Containing Protein 61
pdb|3OW8|D Chain D, Crystal Structure Of The Wd Repeat-Containing Protein 61
Length = 321
Score = 33.1 bits (74), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 75/308 (24%), Positives = 119/308 (38%), Gaps = 42/308 (13%)
Query: 106 AHQNAIFDLCW---IKEDT-NILTASGDQTIKIWD--AEKKKCTGALMGHTGSIKSL-CS 158
AH +AI+ + W KE++ ++T S D +K+W E+ +L GH + S+ S
Sbjct: 30 AHDDAIWSVAWGTNKKENSETVVTGSLDDLVKVWKWRDERLDLQWSLEGHQLGVVSVDIS 89
Query: 159 HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE-----SFVFS---SAVVKGAHL---- 206
H I S S D +WDL KS A + FS + G H+
Sbjct: 90 HTLP--IAASSSLDAHIRLWDLENGKQIKSIDAGPVDAWTLAFSPDSQYLATGTHVGKVN 147
Query: 207 ---LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263
+ K+ I S+ Y D +A+ A++ I+ +D K T
Sbjct: 148 IFGVESGKKEYSLDTRGKFILSIAYSPDGKYLASG-AIDGIINIFDIATGKLLHTL---- 202
Query: 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY 323
E I SL+ + L + D I +Y+V + SG S+
Sbjct: 203 -------EGHAMPIRSLTFSPDSQLLVTASDDGYIKIYDVQHANLAGT--LSGH--ASWV 251
Query: 324 VKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383
+ CP+ +H +S SSD + VW V H +V V + N KIV+
Sbjct: 252 LNVAFCPDDTHFVSSSSDKSVKVWDVGTRTC-VHTFFDHQDQVWGVKYNGN-GSKIVSVG 309
Query: 384 DDYTVRLW 391
DD + ++
Sbjct: 310 DDQEIHIY 317
>pdb|1PI6|A Chain A, Yeast Actin Interacting Protein 1 (Aip1), Orthorhombic
Crystal Form
Length = 615
Score = 33.1 bits (74), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 72 DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131
D +V S RK+ F K D Q IF L W+ + T D T
Sbjct: 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275
Query: 132 IKIWDAEKKKCT 143
I++WD KC
Sbjct: 276 IRVWDVTTSKCV 287
>pdb|1PGU|A Chain A, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
pdb|1PGU|B Chain B, Yeast Actin Interacting Protein 1 (aip1), Se-met Protein,
Monoclinic Crystal Form
Length = 615
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/72 (29%), Positives = 27/72 (37%), Gaps = 1/72 (1%)
Query: 72 DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131
D +V S RK+ F K D Q IF L W+ + T D T
Sbjct: 217 DSGEFVITVGSDRKISCFDGKSGEFLKYIEDDQEPVQGGIFALSWL-DSQKFATVGADAT 275
Query: 132 IKIWDAEKKKCT 143
I++WD KC
Sbjct: 276 IRVWDVTTSKCV 287
>pdb|3ACP|A Chain A, Crystal Structure Of Yeast Rpn14, A Chaperone Of The 19s
Reg Particle Of The Proteasome
Length = 417
Score = 32.3 bits (72), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 68 FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127
F + +G + + DS +F RE + AH + I L + ++++S
Sbjct: 109 FILGTTEGDIKVLDS-----NFNLQREIDQ--------AHVSEITKLKFFPSGEALISSS 155
Query: 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
D +KIW + L+GH ++ + ++L S S DG+ +W+
Sbjct: 156 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWE 206
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 19/155 (12%)
Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD 164
+ H+ + D+ I N+L+AS D TI++W+ C HT + K NS
Sbjct: 175 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWE-----CGTGTTIHTFNRKENPHDGVNSI 229
Query: 165 ILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG--------AHLLSQSKRVSRR 216
L G+ L S+ K N E + V+ G ++ S+ + +
Sbjct: 230 ALFVGTD------RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 283
Query: 217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR 251
+ S S+ + + A N ++ WD R
Sbjct: 284 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 318
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 111/272 (40%), Gaps = 33/272 (12%)
Query: 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184
T GD IK+ D+ H I L P+ + L+S S+D IW ++ S
Sbjct: 113 TTEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGS 169
Query: 185 SPKSNCAESFVFSSAVV--KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN 242
+P++ + + +G ++LS S + R + T++ + + VN
Sbjct: 170 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN--PHDGVN 227
Query: 243 SIVKFWDT-RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301
SI F T R L H S+S K ++L + G ++ A + I ++
Sbjct: 228 SIALFVGTDRQL---------HEISTSKK-------NNLEFGTYGKYVIAGHVSGVITVH 271
Query: 302 NVLQLDKGPIQHFS--GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
NV ++ IQ S C S V NA++I +G +G W + P+ +
Sbjct: 272 NVFSKEQ-TIQLPSKFTCSCNSLTVDGN---NANYIYAGYENGMLAQWDLRSPECPVGEF 327
Query: 360 KSHDGEVTAVNWCPNEAGKIVTSSD-DYTVRL 390
++G T +N AG + SS D +++L
Sbjct: 328 LINEG--TPINNVYFAAGALFVSSGFDTSIKL 357
>pdb|3VL1|A Chain A, Crystal Structure Of Yeast Rpn14
pdb|3VL1|B Chain B, Crystal Structure Of Yeast Rpn14
Length = 420
Score = 32.3 bits (72), Expect = 0.66, Method: Compositional matrix adjust.
Identities = 25/112 (22%), Positives = 48/112 (42%), Gaps = 14/112 (12%)
Query: 68 FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127
F + +G + + DS +F RE + AH + I L + ++++S
Sbjct: 112 FILGTTEGDIKVLDS-----NFNLQREIDQ--------AHVSEITKLKFFPSGEALISSS 158
Query: 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179
D +KIW + L+GH ++ + ++L S S DG+ +W+
Sbjct: 159 QDMQLKIWSVKDGSNPRTLIGHRATVTDIAIIDRGRNVL-SASLDGTIRLWE 209
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 34/155 (21%), Positives = 59/155 (38%), Gaps = 19/155 (12%)
Query: 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSD 164
+ H+ + D+ I N+L+AS D TI++W+ C HT + K NS
Sbjct: 178 IGHRATVTDIAIIDRGRNVLSASLDGTIRLWE-----CGTGTTIHTFNRKENPHDGVNSI 232
Query: 165 ILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG--------AHLLSQSKRVSRR 216
L G+ L S+ K N E + V+ G ++ S+ + +
Sbjct: 233 ALFVGTD------RQLHEISTSKKNNLEFGTYGKYVIAGHVSGVITVHNVFSKEQTIQLP 286
Query: 217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR 251
+ S S+ + + A N ++ WD R
Sbjct: 287 SKFTCSCNSLTVDGNNANYIYAGYENGMLAQWDLR 321
Score = 30.4 bits (67), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 64/272 (23%), Positives = 111/272 (40%), Gaps = 33/272 (12%)
Query: 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184
T GD IK+ D+ H I L P+ + L+S S+D IW ++ S
Sbjct: 116 TTEGD--IKVLDSNFNLQREIDQAHVSEITKLKFFPS-GEALISSSQDMQLKIWSVKDGS 172
Query: 185 SPKSNCAESFVFSSAVV--KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN 242
+P++ + + +G ++LS S + R + T++ + + VN
Sbjct: 173 NPRTLIGHRATVTDIAIIDRGRNVLSASLDGTIRLWECGTGTTIHTFNRKEN--PHDGVN 230
Query: 243 SIVKFWDT-RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301
SI F T R L H S+S K ++L + G ++ A + I ++
Sbjct: 231 SIALFVGTDRQL---------HEISTSKK-------NNLEFGTYGKYVIAGHVSGVITVH 274
Query: 302 NVLQLDKGPIQHFS--GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359
NV ++ IQ S C S V NA++I +G +G W + P+ +
Sbjct: 275 NVFSKEQ-TIQLPSKFTCSCNSLTVDGN---NANYIYAGYENGMLAQWDLRSPECPVGEF 330
Query: 360 KSHDGEVTAVNWCPNEAGKIVTSSD-DYTVRL 390
++G T +N AG + SS D +++L
Sbjct: 331 LINEG--TPINNVYFAAGALFVSSGFDTSIKL 360
>pdb|3BG0|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG0|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|A Chain A, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|D Chain D, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|E Chain E, Architecture Of A Coat For The Nuclear Pore Membrane
pdb|3BG1|H Chain H, Architecture Of A Coat For The Nuclear Pore Membrane
Length = 316
Score = 31.6 bits (70), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 23/76 (30%), Positives = 36/76 (47%), Gaps = 3/76 (3%)
Query: 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK--KKCTGALMGHTGSIKSLC-SHPTN 162
+H++ I D T + T S D+++KI+D + L GH G + + +HP
Sbjct: 11 SHEDMIHDAQMDYYGTRLATCSSDRSVKIFDVRNGGQILIADLRGHEGPVWQVAWAHPMY 70
Query: 163 SDILVSGSRDGSFAIW 178
+IL S S D IW
Sbjct: 71 GNILASCSYDRKVIIW 86
>pdb|2PM9|A Chain A, Crystal Structure Of Yeast Sec1331 VERTEX ELEMENT OF THE
Copii Vesicular Coat
Length = 416
Score = 31.6 bits (70), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 149 HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL-RCKSSP 186
H+ S+K++ + ++L SG +G IWD+ +C SP
Sbjct: 112 HSSSVKTVKFNAKQDNVLASGGNNGEIFIWDMNKCTESP 150
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 13/34 (38%), Positives = 20/34 (58%), Gaps = 1/34 (2%)
Query: 106 AHQNAIFDLCWIKEDTNILTASG-DQTIKIWDAE 138
HQ I L W +D ++L +SG D T+ +W+ E
Sbjct: 260 GHQKGILSLDWCHQDEHLLLSSGRDNTVLLWNPE 293
Score = 28.9 bits (63), Expect = 7.5, Method: Compositional matrix adjust.
Identities = 28/134 (20%), Positives = 56/134 (41%), Gaps = 21/134 (15%)
Query: 56 VSFCKTSKNSHIFAVSDEDGYVSLFD--SRRKLPSFACHRENA---EKARISDWVAHQNA 110
+S +H+FA + + S++D +++++ + N+ ++ + +W
Sbjct: 169 ISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHP---- 224
Query: 111 IFDLCWIKEDTNILTASG---DQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDI 165
K T + TA+G D +I IWD + GH I SL + +
Sbjct: 225 -------KNSTRVATATGSDNDPSILIWDLRNANTPLQTLNQGHQKGILSLDWCHQDEHL 277
Query: 166 LVSGSRDGSFAIWD 179
L+S RD + +W+
Sbjct: 278 LLSSGRDNTVLLWN 291
Score = 28.5 bits (62), Expect = 9.6, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 36/86 (41%), Gaps = 10/86 (11%)
Query: 111 IFDLCWIKEDTNILTASGDQTI-KIWDAEKKK------CTGALMGHTGSIKSLCSHPTNS 163
+ L W + ++ ++G IWD + KK T G + + HP NS
Sbjct: 168 VISLAWNQSLAHVFASAGSSNFASIWDLKAKKEVIHLSYTSPNSGIKQQLSVVEWHPKNS 227
Query: 164 DILVSGS---RDGSFAIWDLRCKSSP 186
+ + + D S IWDLR ++P
Sbjct: 228 TRVATATGSDNDPSILIWDLRNANTP 253
>pdb|2VSA|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|A Chain A, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
pdb|2VSE|B Chain B, Structure And Mode Of Action Of A Mosquitocidal Holotoxin
Length = 841
Score = 30.8 bits (68), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 31/72 (43%), Gaps = 2/72 (2%)
Query: 324 VKSEICPNASHILSGSSDGNAYVWQ-VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS 382
V +I N HI S S N VW + P K+KS ++ W N IV +
Sbjct: 432 VIEQISTNKVHIFSNSDKENQ-VWNLIYNPILKAYKIKSLKYPNYSLAWDSNNTRTIVAA 490
Query: 383 SDDYTVRLWSLE 394
+ DY + W +E
Sbjct: 491 TGDYNDQYWLIE 502
>pdb|4E5Z|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 436
Score = 30.0 bits (66), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 120 DTNILTASGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRDGSFA 176
D + TAS DQT+KIWD + + + + H + + C P + +L + +
Sbjct: 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---- 318
Query: 177 IWDLRCKSSPKSNCAESFV 195
++R S+ + +C +
Sbjct: 319 --EIRVYSASQWDCPLGLI 335
Score = 28.5 bits (62), Expect = 8.3, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 27/133 (20%)
Query: 155 SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP---------------KSNCAESFVFSSA 199
SL HPT+ + GS+ G +W+ K P K N + F ++
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS-----IATASAVNSIV-------KF 247
++G L K R AS ++ + +VS + T V +++ +
Sbjct: 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL 243
Query: 248 WDTRNLKAQITQA 260
W+ R K ++T
Sbjct: 244 WNLRMHKKKVTHV 256
>pdb|4E54|B Chain B, Damaged Dna Induced Uv-Damaged Dna-Binding Protein
(Uv-Ddb) Dimerization And Its Roles In Chromatinized Dna
Repair
Length = 435
Score = 29.6 bits (65), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 120 DTNILTASGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRDGSFA 176
D + TAS DQT+KIWD + + + + H + + C P + +L + +
Sbjct: 263 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---- 318
Query: 177 IWDLRCKSSPKSNCAESFV 195
++R S+ + +C +
Sbjct: 319 --EIRVYSASQWDCPLGLI 335
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 27/133 (20%)
Query: 155 SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP---------------KSNCAESFVFSSA 199
SL HPT+ + GS+ G +W+ K P K N + F ++
Sbjct: 124 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 183
Query: 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS-----IATASAVNSIV-------KF 247
++G L K R AS ++ + +VS + T V +++ +
Sbjct: 184 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL 243
Query: 248 WDTRNLKAQITQA 260
W+ R K ++T
Sbjct: 244 WNLRMHKKKVTHV 256
>pdb|3EI4|B Chain B, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|D Chain D, Structure Of The Hsddb1-Hsddb2 Complex
pdb|3EI4|F Chain F, Structure Of The Hsddb1-Hsddb2 Complex
Length = 436
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 18/79 (22%), Positives = 36/79 (45%), Gaps = 9/79 (11%)
Query: 120 DTNILTASGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRDGSFA 176
D + TAS DQT+KIWD + + + + H + + C P + +L + +
Sbjct: 264 DWFLATASVDQTVKIWDLRQVRGKASFLYSLPHRHPVNAACFSPDGARLLTTDQKS---- 319
Query: 177 IWDLRCKSSPKSNCAESFV 195
++R S+ + +C +
Sbjct: 320 --EIRVYSASQWDCPLGLI 336
Score = 28.5 bits (62), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 28/133 (21%), Positives = 50/133 (37%), Gaps = 27/133 (20%)
Query: 155 SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP---------------KSNCAESFVFSSA 199
SL HPT+ + GS+ G +W+ K P K N + F ++
Sbjct: 125 SLAWHPTHPSTVAVGSKGGDIMLWNFGIKDKPTFIKGIGAGGSITGLKFNPLNTNQFYAS 184
Query: 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVS-----IATASAVNSIV-------KF 247
++G L K R AS ++ + +VS + T V +++ +
Sbjct: 185 SMEGTTRLQDFKGNILRVFASSDTINIWFCSLDVSASSRMVVTGDNVGNVILLNMDGKEL 244
Query: 248 WDTRNLKAQITQA 260
W+ R K ++T
Sbjct: 245 WNLRMHKKKVTHV 257
>pdb|3ADO|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
pdb|3ADP|A Chain A, Crystal Structure Of The Rabbit L-Gulonate 3-Dehydrogenase
(
Length = 319
Score = 29.6 bits (65), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182
+L ASG +K++D E ++ TGAL +KSL SGS GS + +
Sbjct: 23 MLFASGGFRVKLYDIEPRQITGALENIRKEMKSLQQ---------SGSLKGSLSAEEQLS 73
Query: 183 KSSPKSNCAES 193
S +N AE+
Sbjct: 74 LISSCTNLAEA 84
>pdb|3BWB|A Chain A, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWB|B Chain B, Crystal Structure Of The Apo Form Of Spermidine Synthase
From Trypanosoma Cruzi At 2.5 A Resolution
pdb|3BWC|A Chain A, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
pdb|3BWC|B Chain B, Crystal Structure Of Spermidine Synthase From Trypanosoma
Cruzi In Complex With Sam At 2.3 A Resolution
Length = 304
Score = 29.3 bits (64), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 17/29 (58%), Gaps = 4/29 (13%)
Query: 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGS 174
++GHT SLCSHP +L+ G DG
Sbjct: 84 VLGHT----SLCSHPKPERVLIIGGGDGG 108
>pdb|3N3Y|A Chain A, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|B Chain B, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|C Chain C, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
pdb|3N3Y|D Chain D, Crystal Structure Of Thymidylate Synthase X (Thyx) From
Helicobacter Pylori With Fad And Dump At 2.31a
Resolution
Length = 216
Score = 29.3 bits (64), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS 326
+F +S ++H Y + + L +G +Q S RI S VKS
Sbjct: 52 NIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKS 92
>pdb|3AH5|A Chain A, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|B Chain B, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|C Chain C, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|D Chain D, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|E Chain E, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
pdb|3AH5|F Chain F, Crystal Structure Of Flavin Dependent Thymidylate Synthase
Thyx From Helicobacter Pylori Complexed With Fad And
Dump
Length = 216
Score = 29.3 bits (64), Expect = 6.1, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 22/41 (53%)
Query: 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS 326
+F +S ++H Y + + L +G +Q S RI S VKS
Sbjct: 44 NIFRHSSTLEHLYYNFEIKGLSRGALQELSRHRIASLSVKS 84
>pdb|1GXR|A Chain A, Wd40 Region Of Human Groucho/tle1
pdb|1GXR|B Chain B, Wd40 Region Of Human Groucho/tle1
pdb|2CE8|A Chain A, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|B Chain B, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|C Chain C, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE8|D Chain D, An Eh1 Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|A Chain A, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|B Chain B, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|C Chain C, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain.
pdb|2CE9|D Chain D, A Wrpw Peptide Bound To The Groucho-Tle Wd40 Domain
Length = 337
Score = 28.9 bits (63), Expect = 7.9, Method: Compositional matrix adjust.
Identities = 20/66 (30%), Positives = 31/66 (46%), Gaps = 2/66 (3%)
Query: 328 ICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYT 387
I P++ S SDGN VW ++ Q + + H + ++ N+ K+ T D T
Sbjct: 149 ISPDSKVCFSCCSDGNIAVWDLHN-QTLVRQFQGHTDGASCID-ISNDGTKLWTGGLDNT 206
Query: 388 VRLWSL 393
VR W L
Sbjct: 207 VRSWDL 212
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.129 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 13,925,858
Number of Sequences: 62578
Number of extensions: 524601
Number of successful extensions: 2019
Number of sequences better than 100.0: 109
Number of HSP's better than 100.0 without gapping: 90
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 1121
Number of HSP's gapped (non-prelim): 496
length of query: 512
length of database: 14,973,337
effective HSP length: 103
effective length of query: 409
effective length of database: 8,527,803
effective search space: 3487871427
effective search space used: 3487871427
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 54 (25.4 bits)