Query 010390
Match_columns 512
No_of_seqs 761 out of 3964
Neff 11.4
Searched_HMMs 46136
Date Thu Mar 28 23:58:32 2013
Command hhsearch -i /work/01045/syshi/csienesis_hhblits_a3m/010390.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/010390hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG0271 Notchless-like WD40 re 100.0 2.8E-52 6.1E-57 353.8 26.2 326 41-452 106-472 (480)
2 KOG0272 U4/U6 small nuclear ri 100.0 2.5E-48 5.5E-53 334.1 23.4 287 44-392 169-458 (459)
3 KOG0271 Notchless-like WD40 re 100.0 1.2E-47 2.6E-52 325.8 25.9 320 13-392 111-479 (480)
4 KOG0286 G-protein beta subunit 100.0 3.8E-43 8.3E-48 288.3 28.7 288 44-392 49-343 (343)
5 KOG0279 G protein beta subunit 100.0 1.7E-41 3.7E-46 276.8 29.4 296 42-394 7-313 (315)
6 KOG0265 U5 snRNP-specific prot 100.0 8.6E-42 1.9E-46 281.4 25.8 296 40-392 37-336 (338)
7 KOG0315 G-protein beta subunit 100.0 5.7E-41 1.2E-45 269.2 27.0 281 66-403 11-297 (311)
8 KOG0272 U4/U6 small nuclear ri 100.0 8E-42 1.7E-46 294.1 22.0 274 105-424 172-446 (459)
9 KOG0282 mRNA splicing factor [ 100.0 4.4E-42 9.6E-47 300.8 20.4 297 41-392 205-503 (503)
10 KOG0321 WD40 repeat-containing 100.0 4.6E-40 1E-44 297.3 30.5 391 1-400 1-397 (720)
11 KOG0293 WD40 repeat-containing 100.0 2.1E-40 4.6E-45 284.4 24.1 296 44-396 218-515 (519)
12 KOG0284 Polyadenylation factor 100.0 4.4E-41 9.6E-46 288.2 19.6 284 49-394 95-380 (464)
13 KOG0645 WD40 repeat protein [G 100.0 8.8E-39 1.9E-43 259.9 30.1 296 41-394 5-311 (312)
14 KOG0318 WD40 repeat stress pro 100.0 2.7E-38 6E-43 279.6 34.5 339 24-394 157-602 (603)
15 KOG0315 G-protein beta subunit 100.0 7.3E-38 1.6E-42 251.4 28.2 281 39-372 29-309 (311)
16 KOG0318 WD40 repeat stress pro 100.0 2.5E-37 5.4E-42 273.6 34.0 336 42-398 139-564 (603)
17 KOG0279 G protein beta subunit 100.0 6.5E-38 1.4E-42 256.0 26.9 259 34-350 47-313 (315)
18 KOG0295 WD40 repeat-containing 100.0 2E-38 4.3E-43 268.2 24.5 291 41-393 99-405 (406)
19 KOG0319 WD40-repeat-containing 100.0 4.1E-38 9E-43 289.5 28.4 338 39-425 136-606 (775)
20 KOG0285 Pleiotropic regulator 100.0 6.9E-38 1.5E-42 264.3 24.0 293 41-396 142-441 (460)
21 KOG0296 Angio-associated migra 100.0 4.7E-37 1E-41 260.1 27.9 301 41-394 55-398 (399)
22 KOG0263 Transcription initiati 100.0 1.3E-37 2.8E-42 289.1 24.2 255 55-353 380-652 (707)
23 KOG0273 Beta-transducin family 100.0 3E-36 6.6E-41 263.3 30.9 279 51-394 236-523 (524)
24 KOG0316 Conserved WD40 repeat- 100.0 1.1E-36 2.4E-41 242.6 25.4 287 44-393 11-298 (307)
25 KOG0291 WD40-repeat-containing 100.0 2.6E-36 5.6E-41 278.1 31.1 296 50-404 307-622 (893)
26 KOG0266 WD40 repeat-containing 100.0 3.2E-36 7E-41 288.1 32.2 296 43-394 151-454 (456)
27 KOG0278 Serine/threonine kinas 100.0 1.1E-37 2.3E-42 250.6 17.8 296 43-399 7-302 (334)
28 KOG0281 Beta-TrCP (transducin 100.0 1.4E-37 3.1E-42 261.4 19.1 279 49-399 196-482 (499)
29 KOG0273 Beta-transducin family 100.0 1.1E-36 2.3E-41 266.1 24.3 301 47-401 175-489 (524)
30 cd00200 WD40 WD40 domain, foun 100.0 2.2E-35 4.8E-40 270.3 32.6 287 44-392 3-289 (289)
31 KOG0286 G-protein beta subunit 100.0 1.5E-35 3.3E-40 243.6 27.8 276 100-418 47-325 (343)
32 KOG0291 WD40-repeat-containing 100.0 2.8E-35 6E-40 271.4 31.8 323 42-396 137-510 (893)
33 PLN00181 protein SPA1-RELATED; 100.0 8.7E-35 1.9E-39 299.5 36.8 296 46-393 479-792 (793)
34 KOG0277 Peroxisomal targeting 100.0 3.4E-36 7.3E-41 242.6 19.7 284 12-393 3-308 (311)
35 KOG0284 Polyadenylation factor 100.0 2.9E-36 6.3E-41 258.8 20.5 278 107-430 95-372 (464)
36 KOG0295 WD40 repeat-containing 100.0 5.7E-36 1.2E-40 253.3 22.0 297 64-418 75-386 (406)
37 KOG0306 WD40-repeat-containing 100.0 7.6E-35 1.6E-39 268.4 30.1 390 41-456 98-660 (888)
38 KOG0263 Transcription initiati 100.0 7.4E-36 1.6E-40 277.5 22.2 253 101-399 371-654 (707)
39 KOG0313 Microtubule binding pr 100.0 8.1E-35 1.8E-39 247.7 26.4 307 48-394 103-418 (423)
40 KOG0319 WD40-repeat-containing 100.0 6.1E-35 1.3E-39 268.7 26.8 308 38-397 311-622 (775)
41 KOG0643 Translation initiation 100.0 4.5E-34 9.8E-39 232.0 26.8 297 44-395 4-318 (327)
42 KOG0275 Conserved WD40 repeat- 100.0 1.3E-35 2.8E-40 247.6 18.1 294 48-392 211-507 (508)
43 KOG0285 Pleiotropic regulator 100.0 2.8E-34 6E-39 242.6 23.6 256 99-402 142-397 (460)
44 KOG0265 U5 snRNP-specific prot 100.0 6.6E-34 1.4E-38 235.0 23.9 259 98-401 37-303 (338)
45 KOG0288 WD40 repeat protein Ti 100.0 2.9E-35 6.3E-40 253.0 16.2 293 41-392 166-459 (459)
46 KOG0292 Vesicle coat complex C 100.0 9.8E-34 2.1E-38 265.4 25.6 302 46-397 5-324 (1202)
47 KOG0283 WD40 repeat-containing 100.0 7.1E-34 1.5E-38 266.6 24.0 271 44-353 260-579 (712)
48 KOG0276 Vesicle coat complex C 100.0 2.6E-33 5.5E-38 253.2 25.0 286 45-390 8-295 (794)
49 KOG0292 Vesicle coat complex C 100.0 8.8E-33 1.9E-37 259.1 27.8 282 36-350 37-321 (1202)
50 KOG0772 Uncharacterized conser 100.0 2.1E-33 4.6E-38 248.2 22.3 309 41-393 158-486 (641)
51 KOG0645 WD40 repeat protein [G 100.0 4.2E-32 9.2E-37 221.1 28.0 251 100-395 6-262 (312)
52 KOG0640 mRNA cleavage stimulat 100.0 3.5E-33 7.6E-38 231.6 22.1 309 44-394 106-426 (430)
53 KOG0306 WD40-repeat-containing 100.0 2.1E-32 4.5E-37 252.4 27.9 301 44-397 367-667 (888)
54 KOG0282 mRNA splicing factor [ 100.0 5.4E-34 1.2E-38 250.2 16.3 264 96-403 202-471 (503)
55 KOG0316 Conserved WD40 repeat- 100.0 1.1E-32 2.4E-37 219.8 22.2 256 99-402 8-265 (307)
56 KOG0266 WD40 repeat-containing 100.0 2.2E-32 4.7E-37 261.8 28.4 256 107-403 158-418 (456)
57 KOG0268 Sof1-like rRNA process 100.0 1E-33 2.3E-38 239.6 16.4 298 41-404 57-355 (433)
58 KOG1407 WD40 repeat protein [F 100.0 9.3E-32 2E-36 217.9 25.9 288 44-394 14-311 (313)
59 KOG0281 Beta-TrCP (transducin 100.0 3.3E-33 7.3E-38 235.2 17.0 238 107-399 196-433 (499)
60 KOG1446 Histone H3 (Lys4) meth 100.0 6.3E-31 1.4E-35 219.6 30.0 291 47-397 11-306 (311)
61 KOG0276 Vesicle coat complex C 100.0 2.4E-32 5.2E-37 246.9 22.7 277 101-424 6-285 (794)
62 KOG0973 Histone transcription 100.0 1.3E-31 2.9E-36 257.9 26.1 312 50-404 13-365 (942)
63 cd00200 WD40 WD40 domain, foun 100.0 2.5E-30 5.5E-35 236.7 31.3 256 101-402 2-257 (289)
64 KOG0296 Angio-associated migra 100.0 4E-31 8.6E-36 224.3 23.1 281 101-452 57-389 (399)
65 PTZ00421 coronin; Provisional 100.0 3.7E-30 8E-35 245.0 31.3 291 62-396 29-333 (493)
66 KOG0293 WD40 repeat-containing 100.0 5.5E-31 1.2E-35 226.7 22.8 294 98-462 214-513 (519)
67 KOG0647 mRNA export protein (c 100.0 3.3E-30 7.2E-35 213.3 26.5 280 49-385 26-315 (347)
68 KOG0274 Cdc4 and related F-box 100.0 1.3E-30 2.8E-35 248.1 26.6 282 49-402 207-490 (537)
69 KOG0289 mRNA splicing factor [ 100.0 3.3E-30 7.2E-35 223.4 25.8 283 53-393 222-505 (506)
70 KOG0310 Conserved WD40 repeat- 100.0 1.5E-30 3.3E-35 229.0 23.6 248 46-353 64-312 (487)
71 KOG0299 U3 snoRNP-associated p 100.0 6.3E-30 1.4E-34 223.5 26.5 303 43-392 135-454 (479)
72 KOG1446 Histone H3 (Lys4) meth 100.0 3.2E-29 7E-34 209.4 29.3 283 101-428 7-295 (311)
73 PLN00181 protein SPA1-RELATED; 100.0 6.3E-30 1.4E-34 263.6 30.9 270 74-397 457-741 (793)
74 KOG0310 Conserved WD40 repeat- 100.0 4E-30 8.8E-35 226.4 24.3 287 49-397 25-312 (487)
75 KOG0283 WD40 repeat-containing 100.0 1.6E-30 3.4E-35 244.3 23.1 255 100-398 258-580 (712)
76 KOG0305 Anaphase promoting com 100.0 9.5E-30 2.1E-34 232.9 27.2 274 61-397 185-464 (484)
77 KOG0313 Microtubule binding pr 100.0 3.9E-30 8.6E-35 219.3 22.3 291 105-430 102-411 (423)
78 PTZ00420 coronin; Provisional 100.0 3E-29 6.4E-34 239.6 30.9 251 71-375 50-318 (568)
79 KOG1407 WD40 repeat protein [F 100.0 5.4E-30 1.2E-34 207.7 21.1 278 102-452 14-293 (313)
80 KOG0641 WD40 repeat protein [G 100.0 1.8E-27 4E-32 189.1 32.1 311 43-394 25-349 (350)
81 KOG0264 Nucleosome remodeling 100.0 1.5E-29 3.2E-34 221.2 21.3 276 47-395 121-405 (422)
82 KOG0294 WD40 repeat-containing 100.0 1.7E-28 3.6E-33 204.5 26.5 281 67-399 3-286 (362)
83 KOG0294 WD40 repeat-containing 100.0 1.3E-28 2.8E-33 205.2 25.8 273 16-354 11-285 (362)
84 KOG0300 WD40 repeat-containing 100.0 2.8E-29 6E-34 209.3 21.7 298 39-396 137-478 (481)
85 KOG0308 Conserved WD40 repeat- 100.0 8.5E-30 1.9E-34 231.6 20.2 292 62-395 34-328 (735)
86 KOG0277 Peroxisomal targeting 100.0 3.5E-29 7.6E-34 202.3 20.6 245 112-397 12-268 (311)
87 PTZ00421 coronin; Provisional 100.0 1.6E-28 3.5E-33 233.9 28.3 216 45-306 70-292 (493)
88 KOG1036 Mitotic spindle checkp 100.0 7.1E-28 1.5E-32 200.4 27.6 273 50-384 13-294 (323)
89 KOG0269 WD40 repeat-containing 100.0 3E-29 6.6E-34 232.5 21.0 295 50-397 39-343 (839)
90 KOG1332 Vesicle coat complex C 100.0 1E-28 2.2E-33 198.4 19.3 258 46-351 7-287 (299)
91 KOG0772 Uncharacterized conser 100.0 7.3E-29 1.6E-33 219.6 20.2 301 100-424 159-474 (641)
92 KOG1273 WD40 repeat protein [G 100.0 5.2E-28 1.1E-32 201.5 23.2 294 53-400 26-328 (405)
93 PTZ00420 coronin; Provisional 100.0 5E-27 1.1E-31 224.5 32.3 239 126-398 50-297 (568)
94 KOG0640 mRNA cleavage stimulat 100.0 1.2E-28 2.7E-33 204.8 18.0 265 99-402 103-391 (430)
95 KOG0278 Serine/threonine kinas 100.0 2.9E-29 6.4E-34 202.2 13.6 255 37-354 46-301 (334)
96 KOG0973 Histone transcription 100.0 3.2E-28 7E-33 234.7 22.3 275 39-352 58-357 (942)
97 KOG0647 mRNA export protein (c 100.0 1.1E-27 2.5E-32 198.4 22.2 271 106-424 25-309 (347)
98 KOG0301 Phospholipase A2-activ 100.0 4.3E-27 9.3E-32 215.8 27.8 283 42-396 6-290 (745)
99 KOG2096 WD40 repeat protein [G 100.0 5.8E-27 1.3E-31 195.6 25.2 302 43-392 79-400 (420)
100 KOG1063 RNA polymerase II elon 100.0 6.8E-27 1.5E-31 214.4 27.7 325 41-396 182-650 (764)
101 KOG0299 U3 snoRNP-associated p 100.0 1.7E-27 3.8E-32 208.3 22.6 254 47-348 199-454 (479)
102 KOG1539 WD repeat protein [Gen 100.0 6.3E-27 1.4E-31 219.0 27.7 351 38-424 190-633 (910)
103 KOG4283 Transcription-coupled 100.0 6.6E-27 1.4E-31 193.2 24.3 314 47-393 40-364 (397)
104 KOG0305 Anaphase promoting com 100.0 3.2E-27 7E-32 216.4 24.9 242 49-352 216-463 (484)
105 KOG1036 Mitotic spindle checkp 100.0 8.7E-27 1.9E-31 194.0 24.9 274 107-454 12-297 (323)
106 KOG0288 WD40 repeat protein Ti 100.0 1.6E-28 3.5E-33 211.7 15.0 256 100-405 167-428 (459)
107 KOG0274 Cdc4 and related F-box 100.0 6.5E-27 1.4E-31 223.0 27.1 261 43-371 242-503 (537)
108 KOG0275 Conserved WD40 repeat- 100.0 4.7E-28 1E-32 202.6 16.7 253 106-402 211-475 (508)
109 KOG1332 Vesicle coat complex C 100.0 1.1E-27 2.3E-32 192.6 18.0 254 105-394 8-286 (299)
110 KOG0289 mRNA splicing factor [ 100.0 4.1E-27 8.9E-32 204.3 22.6 257 36-349 247-505 (506)
111 KOG0300 WD40 repeat-containing 100.0 6.4E-27 1.4E-31 195.2 23.0 299 99-418 139-454 (481)
112 KOG1408 WD40 repeat protein [F 100.0 3.8E-27 8.3E-32 216.6 23.4 312 49-398 368-717 (1080)
113 KOG0264 Nucleosome remodeling 100.0 1.6E-27 3.5E-32 208.5 20.0 281 148-462 122-404 (422)
114 KOG0643 Translation initiation 100.0 1.1E-26 2.3E-31 189.4 22.8 298 103-451 5-307 (327)
115 KOG0268 Sof1-like rRNA process 100.0 2.9E-28 6.3E-33 206.7 13.9 253 100-404 58-312 (433)
116 KOG0639 Transducin-like enhanc 100.0 3.4E-27 7.4E-32 208.4 20.8 284 47-393 416-703 (705)
117 KOG0641 WD40 repeat protein [G 100.0 7E-26 1.5E-30 180.1 26.2 263 41-350 80-349 (350)
118 KOG0308 Conserved WD40 repeat- 100.0 7.7E-27 1.7E-31 212.6 19.7 258 107-396 20-287 (735)
119 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.9E-25 8.5E-30 204.0 30.2 280 65-402 1-287 (300)
120 KOG0646 WD40 repeat protein [G 99.9 3.9E-26 8.5E-31 200.2 21.6 308 36-393 24-349 (476)
121 KOG1034 Transcriptional repres 99.9 4.7E-26 1E-30 191.0 20.7 310 46-394 34-383 (385)
122 KOG2445 Nuclear pore complex c 99.9 2.2E-25 4.8E-30 185.3 23.6 268 46-395 9-319 (361)
123 KOG1274 WD40 repeat protein [G 99.9 6.8E-25 1.5E-29 207.8 29.7 287 47-391 10-297 (933)
124 KOG2055 WD40 repeat protein [G 99.9 4.7E-25 1E-29 193.2 24.8 288 50-394 213-512 (514)
125 KOG0302 Ribosome Assembly prot 99.9 1.8E-25 3.9E-30 190.9 21.6 287 39-392 140-436 (440)
126 KOG0646 WD40 repeat protein [G 99.9 2.5E-25 5.5E-30 195.2 22.4 284 69-403 11-316 (476)
127 KOG0270 WD40 repeat-containing 99.9 1E-25 2.2E-30 196.5 19.0 267 50-355 173-454 (463)
128 KOG1408 WD40 repeat protein [F 99.9 7.2E-25 1.6E-29 201.8 25.4 315 60-426 331-702 (1080)
129 KOG1539 WD repeat protein [Gen 99.9 1.7E-24 3.6E-29 202.9 27.6 364 53-472 162-616 (910)
130 KOG4328 WD40 protein [Function 99.9 7.7E-25 1.7E-29 191.6 23.3 305 44-395 180-496 (498)
131 KOG2106 Uncharacterized conser 99.9 1.3E-23 2.8E-28 186.1 31.2 298 59-391 206-518 (626)
132 KOG0650 WD40 repeat nucleolar 99.9 1.1E-24 2.3E-29 196.8 23.9 288 41-391 391-732 (733)
133 KOG2106 Uncharacterized conser 99.9 1.1E-23 2.4E-28 186.6 29.6 277 51-393 247-625 (626)
134 KOG0639 Transducin-like enhanc 99.9 4.2E-25 9.1E-30 195.3 18.3 274 105-428 416-694 (705)
135 KOG0269 WD40 repeat-containing 99.9 2.4E-25 5.3E-30 206.8 17.0 250 53-354 90-344 (839)
136 KOG1274 WD40 repeat protein [G 99.9 9.7E-24 2.1E-28 200.1 27.9 263 105-418 10-280 (933)
137 KOG2919 Guanine nucleotide-bin 99.9 1E-23 2.3E-28 176.6 24.5 299 52-386 48-362 (406)
138 KOG4227 WD40 repeat protein [G 99.9 3.2E-24 7E-29 184.1 21.1 336 12-393 22-386 (609)
139 KOG4283 Transcription-coupled 99.9 9.5E-24 2.1E-28 174.6 22.8 258 105-405 40-334 (397)
140 KOG0301 Phospholipase A2-activ 99.9 3.3E-24 7.3E-29 197.0 21.7 277 99-433 5-284 (745)
141 KOG2048 WD40 repeat protein [G 99.9 5.3E-23 1.2E-27 188.7 28.0 291 50-395 25-320 (691)
142 KOG4378 Nuclear protein COP1 [ 99.9 9.4E-24 2E-28 186.6 21.2 266 53-374 37-304 (673)
143 KOG2096 WD40 repeat protein [G 99.9 3.3E-23 7.1E-28 173.3 22.8 296 101-452 79-394 (420)
144 KOG1063 RNA polymerase II elon 99.9 1.6E-22 3.4E-27 186.0 28.7 329 45-394 262-699 (764)
145 KOG4328 WD40 protein [Function 99.9 3E-23 6.6E-28 181.7 22.7 263 101-401 179-457 (498)
146 KOG0307 Vesicle coat complex C 99.9 2.2E-24 4.8E-29 209.4 16.2 295 60-400 13-333 (1049)
147 KOG1009 Chromatin assembly com 99.9 6.6E-23 1.4E-27 177.0 21.7 316 42-399 6-377 (434)
148 KOG0650 WD40 repeat nucleolar 99.9 3.2E-23 7E-28 187.4 20.5 275 100-392 392-678 (733)
149 KOG0267 Microtubule severing p 99.9 8.3E-25 1.8E-29 201.8 9.6 257 65-386 4-260 (825)
150 KOG1034 Transcriptional repres 99.9 1.5E-23 3.3E-28 176.0 16.2 280 49-350 88-383 (385)
151 KOG0267 Microtubule severing p 99.9 2.3E-24 5.1E-29 198.8 10.8 238 45-342 23-260 (825)
152 KOG0322 G-protein beta subunit 99.9 9.2E-23 2E-27 166.2 18.1 312 42-393 6-322 (323)
153 KOG1273 WD40 repeat protein [G 99.9 4.7E-22 1E-26 166.2 22.3 254 111-404 26-290 (405)
154 TIGR03866 PQQ_ABC_repeats PQQ- 99.9 3.7E-21 8E-26 177.5 29.5 272 43-373 24-300 (300)
155 KOG1188 WD40 repeat protein [G 99.9 6.4E-22 1.4E-26 167.3 21.1 282 66-395 41-347 (376)
156 KOG1445 Tumor-specific antigen 99.9 1.9E-22 4.1E-27 183.6 19.2 130 45-184 74-203 (1012)
157 KOG2055 WD40 repeat protein [G 99.9 7.2E-22 1.6E-26 173.4 21.8 252 108-401 213-474 (514)
158 KOG0270 WD40 repeat-containing 99.9 4.2E-22 9.2E-27 174.0 20.0 246 112-400 177-455 (463)
159 KOG1538 Uncharacterized conser 99.9 7.1E-22 1.5E-26 181.0 21.6 278 52-397 14-296 (1081)
160 KOG0302 Ribosome Assembly prot 99.9 7.2E-22 1.6E-26 169.0 19.1 231 146-397 147-381 (440)
161 KOG2048 WD40 repeat protein [G 99.9 1.4E-20 3E-25 173.1 28.7 251 106-398 23-279 (691)
162 KOG0303 Actin-binding protein 99.9 8.8E-22 1.9E-26 169.4 18.6 214 45-305 76-295 (472)
163 KOG0307 Vesicle coat complex C 99.9 7.5E-22 1.6E-26 192.0 17.0 255 53-353 67-330 (1049)
164 KOG0642 Cell-cycle nuclear pro 99.9 9.2E-22 2E-26 177.1 16.2 276 41-403 285-570 (577)
165 KOG1007 WD repeat protein TSSC 99.9 9.6E-21 2.1E-25 156.5 20.6 288 45-394 58-361 (370)
166 KOG0321 WD40 repeat-containing 99.9 6.6E-21 1.4E-25 173.8 21.6 261 46-353 96-394 (720)
167 KOG1334 WD40 repeat protein [G 99.9 1.3E-21 2.8E-26 172.9 15.9 314 40-398 132-470 (559)
168 KOG4378 Nuclear protein COP1 [ 99.9 4.3E-21 9.3E-26 169.9 18.6 224 52-332 81-305 (673)
169 KOG2919 Guanine nucleotide-bin 99.9 5.6E-20 1.2E-24 154.5 22.0 254 110-397 51-331 (406)
170 KOG1310 WD40 repeat protein [G 99.9 2.9E-20 6.3E-25 166.8 20.8 229 42-302 42-301 (758)
171 KOG1009 Chromatin assembly com 99.9 2.6E-20 5.6E-25 161.2 19.0 295 108-452 13-363 (434)
172 KOG1963 WD40 repeat protein [G 99.9 3.7E-19 7.9E-24 168.9 27.3 314 49-395 204-539 (792)
173 KOG0290 Conserved WD40 repeat- 99.9 1.1E-19 2.4E-24 150.5 20.1 257 109-396 45-320 (364)
174 KOG0303 Actin-binding protein 99.9 5.9E-20 1.3E-24 158.3 18.3 251 102-397 75-340 (472)
175 KOG2445 Nuclear pore complex c 99.8 3.2E-19 6.9E-24 149.0 21.3 219 105-396 10-258 (361)
176 COG2319 FOG: WD40 repeat [Gene 99.8 6.4E-18 1.4E-22 164.5 34.1 295 45-397 60-362 (466)
177 KOG1517 Guanine nucleotide bin 99.8 6.5E-19 1.4E-23 169.8 24.9 296 49-397 1063-1384(1387)
178 PRK11028 6-phosphogluconolacto 99.8 1.6E-17 3.4E-22 154.6 32.5 282 69-394 6-304 (330)
179 KOG1007 WD repeat protein TSSC 99.8 5.2E-19 1.1E-23 146.4 18.8 234 73-397 38-292 (370)
180 KOG1188 WD40 repeat protein [G 99.8 4E-19 8.6E-24 150.6 18.5 276 38-350 58-346 (376)
181 KOG0290 Conserved WD40 repeat- 99.8 5.6E-19 1.2E-23 146.3 18.7 247 48-340 94-356 (364)
182 KOG0644 Uncharacterized conser 99.8 5.5E-20 1.2E-24 172.8 14.4 288 44-399 184-473 (1113)
183 KOG4497 Uncharacterized conser 99.8 9.8E-19 2.1E-23 147.4 20.1 304 58-401 13-398 (447)
184 KOG1587 Cytoplasmic dynein int 99.8 2E-18 4.4E-23 163.6 24.5 261 50-351 242-517 (555)
185 KOG0644 Uncharacterized conser 99.8 2.7E-20 5.9E-25 174.8 10.6 254 99-403 181-435 (1113)
186 KOG1240 Protein kinase contain 99.8 5.3E-18 1.1E-22 166.2 26.4 312 37-392 1035-1431(1431)
187 COG2319 FOG: WD40 repeat [Gene 99.8 8.6E-17 1.9E-21 156.5 35.0 293 41-395 146-443 (466)
188 KOG0649 WD40 repeat protein [G 99.8 1.1E-17 2.5E-22 135.1 22.6 289 51-391 11-313 (325)
189 KOG1538 Uncharacterized conser 99.8 9.4E-19 2E-23 160.8 18.2 263 110-426 14-281 (1081)
190 KOG1445 Tumor-specific antigen 99.8 6.9E-19 1.5E-23 160.7 16.9 265 64-375 590-871 (1012)
191 KOG1587 Cytoplasmic dynein int 99.8 8E-18 1.7E-22 159.6 23.9 249 130-401 222-479 (555)
192 KOG4227 WD40 repeat protein [G 99.8 2.7E-18 6E-23 148.0 18.4 258 101-396 49-324 (609)
193 KOG1523 Actin-related protein 99.8 1.9E-17 4.2E-22 139.2 22.7 220 49-306 9-238 (361)
194 KOG2110 Uncharacterized conser 99.8 1.5E-15 3.3E-20 130.5 32.5 236 58-351 10-249 (391)
195 KOG0771 Prolactin regulatory e 99.8 2.3E-17 5E-22 144.1 21.4 204 154-397 148-357 (398)
196 KOG0649 WD40 repeat protein [G 99.8 5.5E-17 1.2E-21 131.2 21.4 249 109-395 11-275 (325)
197 KOG1963 WD40 repeat protein [G 99.8 5.2E-16 1.1E-20 147.8 29.7 305 53-400 163-493 (792)
198 PRK01742 tolB translocation pr 99.8 4.8E-17 1E-21 155.9 22.2 234 74-374 183-426 (429)
199 KOG1517 Guanine nucleotide bin 99.8 1.2E-16 2.7E-21 154.4 23.7 262 109-399 1065-1338(1387)
200 PRK11028 6-phosphogluconolacto 99.8 1.8E-15 3.8E-20 140.8 30.7 261 51-351 35-305 (330)
201 KOG1524 WD40 repeat-containing 99.8 5.6E-17 1.2E-21 145.6 19.5 209 120-391 75-283 (737)
202 KOG1523 Actin-related protein 99.8 2.2E-16 4.8E-21 133.0 20.7 246 106-386 8-270 (361)
203 KOG2111 Uncharacterized conser 99.8 4.4E-15 9.6E-20 125.2 28.1 241 52-352 7-258 (346)
204 KOG1524 WD40 repeat-containing 99.7 6.9E-17 1.5E-21 145.0 17.0 207 66-346 76-282 (737)
205 KOG1334 WD40 repeat protein [G 99.7 3.1E-17 6.6E-22 145.6 14.6 294 100-425 134-453 (559)
206 KOG1272 WD40-repeat-containing 99.7 2E-17 4.3E-22 145.9 12.9 270 53-390 132-405 (545)
207 KOG1310 WD40 repeat protein [G 99.7 6.4E-17 1.4E-21 145.6 16.2 238 101-356 43-309 (758)
208 KOG0771 Prolactin regulatory e 99.7 1.6E-16 3.4E-21 139.0 17.0 204 112-351 148-355 (398)
209 KOG1240 Protein kinase contain 99.7 1.2E-15 2.6E-20 150.0 24.2 271 96-399 1036-1339(1431)
210 KOG0642 Cell-cycle nuclear pro 99.7 5.3E-17 1.1E-21 146.8 13.6 228 39-305 333-562 (577)
211 KOG2394 WD40 protein DMR-N9 [G 99.7 9.8E-16 2.1E-20 137.8 20.8 260 110-400 125-458 (636)
212 KOG1354 Serine/threonine prote 99.7 1.3E-15 2.9E-20 129.5 19.8 270 50-353 25-362 (433)
213 KOG2139 WD40 repeat protein [G 99.7 3.4E-15 7.3E-20 128.0 22.1 246 108-386 98-367 (445)
214 KOG2110 Uncharacterized conser 99.7 1.2E-14 2.6E-19 125.1 24.0 240 108-397 5-251 (391)
215 PRK03629 tolB translocation pr 99.7 9E-15 1.9E-19 139.8 24.5 236 75-373 179-427 (429)
216 KOG1354 Serine/threonine prote 99.7 6.7E-15 1.4E-19 125.3 20.0 287 108-401 25-366 (433)
217 PRK01742 tolB translocation pr 99.7 2.5E-15 5.3E-20 144.1 18.7 223 45-331 198-426 (429)
218 KOG3881 Uncharacterized conser 99.7 1.4E-14 2.9E-19 125.6 20.0 262 107-401 54-327 (412)
219 PF02239 Cytochrom_D1: Cytochr 99.7 9.1E-14 2E-18 128.8 27.0 293 65-403 5-356 (369)
220 KOG1272 WD40-repeat-containing 99.7 2.2E-16 4.8E-21 139.4 8.9 272 8-342 120-401 (545)
221 PRK04922 tolB translocation pr 99.7 2.6E-14 5.7E-19 137.4 24.0 236 75-373 184-432 (433)
222 KOG2139 WD40 repeat protein [G 99.7 2.1E-14 4.5E-19 123.2 20.2 266 151-454 99-368 (445)
223 PRK05137 tolB translocation pr 99.7 7.9E-14 1.7E-18 134.3 26.2 235 75-373 182-432 (435)
224 KOG0322 G-protein beta subunit 99.6 4.6E-15 1E-19 121.7 14.3 288 100-453 6-315 (323)
225 KOG4497 Uncharacterized conser 99.6 1.3E-13 2.9E-18 116.8 23.0 297 57-387 52-425 (447)
226 KOG2111 Uncharacterized conser 99.6 1.5E-13 3.2E-18 116.1 22.5 241 110-397 7-259 (346)
227 PRK02889 tolB translocation pr 99.6 6.7E-14 1.5E-18 134.1 23.4 225 103-374 190-425 (427)
228 KOG2394 WD40 protein DMR-N9 [G 99.6 9.6E-14 2.1E-18 125.2 21.4 193 118-329 183-383 (636)
229 KOG2321 WD40 repeat protein [G 99.6 2.2E-13 4.8E-18 123.9 23.6 293 45-395 46-344 (703)
230 KOG2321 WD40 repeat protein [G 99.6 9.7E-14 2.1E-18 126.2 19.6 256 106-405 49-313 (703)
231 KOG2315 Predicted translation 99.6 2.8E-12 6.1E-17 116.7 26.4 296 61-397 42-393 (566)
232 KOG0280 Uncharacterized conser 99.6 1.5E-12 3.3E-17 108.9 21.8 273 73-397 44-336 (339)
233 PRK05137 tolB translocation pr 99.6 1.5E-12 3.2E-17 125.5 25.0 218 130-398 182-416 (435)
234 PF08662 eIF2A: Eukaryotic tra 99.6 3.3E-13 7.2E-18 113.5 17.9 157 223-400 8-184 (194)
235 KOG1409 Uncharacterized conser 99.6 1E-12 2.2E-17 112.2 20.6 255 39-351 13-271 (404)
236 PF10282 Lactonase: Lactonase, 99.5 2.6E-11 5.6E-16 112.9 30.5 259 57-351 40-323 (345)
237 PRK03629 tolB translocation pr 99.5 1.1E-12 2.4E-17 125.5 21.3 217 49-330 197-427 (429)
238 TIGR02800 propeller_TolB tol-p 99.5 3E-12 6.5E-17 123.7 24.1 233 76-371 171-416 (417)
239 PF10282 Lactonase: Lactonase, 99.5 2.3E-11 5E-16 113.2 28.8 303 68-401 2-331 (345)
240 KOG3881 Uncharacterized conser 99.5 2.3E-12 5E-17 112.0 19.8 281 49-374 54-342 (412)
241 PRK04922 tolB translocation pr 99.5 2.8E-12 6.1E-17 123.4 22.3 217 130-397 184-414 (433)
242 PF02239 Cytochrom_D1: Cytochr 99.5 1.3E-11 2.9E-16 114.5 25.4 253 55-354 41-351 (369)
243 PRK02889 tolB translocation pr 99.5 2.8E-12 6E-17 123.0 20.5 200 47-303 192-402 (427)
244 KOG2041 WD40 repeat protein [G 99.5 9.3E-12 2E-16 116.4 22.2 283 53-375 17-320 (1189)
245 PF08662 eIF2A: Eukaryotic tra 99.5 4.8E-12 1E-16 106.5 18.4 147 61-252 13-180 (194)
246 PRK00178 tolB translocation pr 99.5 2.8E-11 6E-16 117.0 25.6 236 76-374 180-428 (430)
247 KOG0974 WD-repeat protein WDR6 99.5 1.8E-11 3.9E-16 119.5 22.6 120 45-183 170-290 (967)
248 PRK04792 tolB translocation pr 99.4 2.7E-11 5.8E-16 116.5 23.5 222 103-373 212-446 (448)
249 COG2706 3-carboxymuconate cycl 99.4 6E-10 1.3E-14 96.8 28.9 280 55-372 41-345 (346)
250 KOG1409 Uncharacterized conser 99.4 9.7E-12 2.1E-16 106.4 17.6 259 99-399 15-275 (404)
251 KOG0280 Uncharacterized conser 99.4 1.4E-11 3.1E-16 103.2 18.0 212 50-307 69-287 (339)
252 COG2706 3-carboxymuconate cycl 99.4 3E-09 6.6E-14 92.5 31.1 292 74-400 15-329 (346)
253 KOG1064 RAVE (regulator of V-A 99.4 1.5E-12 3.2E-17 133.2 12.5 226 105-387 2205-2439(2439)
254 COG5170 CDC55 Serine/threonine 99.4 1.2E-11 2.5E-16 104.4 15.6 268 49-350 25-367 (460)
255 KOG0974 WD-repeat protein WDR6 99.4 3.2E-11 6.9E-16 117.8 20.6 284 49-398 6-292 (967)
256 TIGR02800 propeller_TolB tol-p 99.4 1.2E-10 2.6E-15 112.5 23.9 216 129-395 169-398 (417)
257 TIGR02658 TTQ_MADH_Hv methylam 99.4 2.5E-09 5.5E-14 96.9 29.8 273 75-402 27-338 (352)
258 PRK01029 tolB translocation pr 99.4 3.4E-10 7.3E-15 108.1 25.6 245 75-375 165-426 (428)
259 KOG2314 Translation initiation 99.4 5.7E-10 1.2E-14 101.7 24.8 286 55-401 212-532 (698)
260 KOG4547 WD40 repeat-containing 99.4 1.5E-10 3.2E-15 106.5 20.9 192 62-305 2-221 (541)
261 COG5354 Uncharacterized protei 99.4 5.5E-10 1.2E-14 100.9 23.5 305 51-399 33-400 (561)
262 KOG0309 Conserved WD40 repeat- 99.3 8.1E-12 1.8E-16 117.2 12.1 288 50-395 24-340 (1081)
263 KOG2314 Translation initiation 99.3 1.3E-09 2.8E-14 99.5 25.1 290 54-397 250-576 (698)
264 PRK01029 tolB translocation pr 99.3 3.5E-10 7.6E-15 107.9 22.8 203 51-306 185-405 (428)
265 COG5170 CDC55 Serine/threonine 99.3 9.3E-11 2E-15 99.1 15.7 280 107-394 25-367 (460)
266 PRK00178 tolB translocation pr 99.3 1.4E-09 3E-14 105.2 24.3 215 131-396 180-408 (430)
267 PF04762 IKI3: IKI3 family; I 99.3 1.1E-08 2.5E-13 105.6 31.4 253 107-396 208-521 (928)
268 PRK04792 tolB translocation pr 99.3 8E-10 1.7E-14 106.4 21.6 195 50-303 217-424 (448)
269 KOG4190 Uncharacterized conser 99.3 5.5E-11 1.2E-15 108.2 12.0 298 39-390 724-1032(1034)
270 PLN02919 haloacid dehalogenase 99.2 1.3E-08 2.8E-13 107.2 28.5 280 54-354 571-892 (1057)
271 KOG4547 WD40 repeat-containing 99.2 3.8E-10 8.2E-15 103.9 14.3 210 162-395 4-221 (541)
272 KOG2041 WD40 repeat protein [G 99.2 5.1E-10 1.1E-14 105.1 14.8 236 108-385 14-279 (1189)
273 KOG1912 WD40 repeat protein [G 99.2 1.5E-08 3.2E-13 96.5 24.2 232 45-302 50-302 (1062)
274 COG4946 Uncharacterized protei 99.2 8.1E-08 1.8E-12 86.4 27.6 173 64-293 331-507 (668)
275 PLN02919 haloacid dehalogenase 99.2 2E-08 4.4E-13 105.9 28.1 272 112-398 571-892 (1057)
276 KOG2315 Predicted translation 99.2 3.7E-09 8E-14 96.8 19.4 253 54-375 129-412 (566)
277 PF04762 IKI3: IKI3 family; I 99.2 1.7E-07 3.6E-12 97.2 33.4 269 106-393 73-378 (928)
278 PF15492 Nbas_N: Neuroblastoma 99.2 4.9E-08 1.1E-12 82.6 23.9 216 62-306 6-261 (282)
279 KOG3914 WD repeat protein WDR4 99.2 7.6E-10 1.7E-14 97.2 13.3 174 222-408 64-237 (390)
280 TIGR03300 assembly_YfgL outer 99.2 2.3E-08 5E-13 95.0 24.7 282 64-402 64-346 (377)
281 TIGR02658 TTQ_MADH_Hv methylam 99.1 3.7E-08 8E-13 89.4 24.4 269 130-462 27-330 (352)
282 COG5354 Uncharacterized protei 99.1 3.6E-08 7.8E-13 89.4 23.1 221 109-386 174-421 (561)
283 KOG4714 Nucleoporin [Nuclear s 99.1 1.2E-09 2.7E-14 90.1 12.7 201 65-304 47-254 (319)
284 KOG1912 WD40 repeat protein [G 99.1 8.9E-09 1.9E-13 97.9 19.4 300 53-400 18-370 (1062)
285 KOG1064 RAVE (regulator of V-A 99.1 6.3E-10 1.4E-14 114.6 11.3 189 53-306 2208-2400(2439)
286 KOG4532 WD40-like repeat conta 99.1 3.8E-08 8.3E-13 81.9 19.0 241 66-351 85-332 (344)
287 KOG4532 WD40-like repeat conta 99.1 2.4E-08 5.2E-13 83.1 17.6 229 129-403 51-291 (344)
288 PRK04043 tolB translocation pr 99.0 1.8E-07 4E-12 88.8 24.8 194 110-352 189-402 (419)
289 KOG4714 Nucleoporin [Nuclear s 99.0 6.2E-09 1.4E-13 86.1 10.5 149 232-395 101-255 (319)
290 TIGR03300 assembly_YfgL outer 99.0 4.8E-07 1E-11 86.0 25.2 267 64-391 104-376 (377)
291 KOG4190 Uncharacterized conser 98.9 2.5E-09 5.5E-14 97.6 8.4 227 143-403 728-957 (1034)
292 KOG0882 Cyclophilin-related pe 98.9 1.9E-08 4E-13 89.8 13.4 264 49-354 8-309 (558)
293 COG4946 Uncharacterized protei 98.9 3.6E-07 7.8E-12 82.4 20.9 120 48-185 357-481 (668)
294 PRK04043 tolB translocation pr 98.9 3.1E-07 6.8E-12 87.3 21.5 191 52-303 189-399 (419)
295 KOG2695 WD40 repeat protein [G 98.9 7E-09 1.5E-13 89.3 9.2 155 236-405 228-387 (425)
296 KOG0882 Cyclophilin-related pe 98.9 3.6E-08 7.7E-13 88.1 13.7 259 106-405 7-316 (558)
297 KOG3914 WD repeat protein WDR4 98.9 3.1E-08 6.7E-13 87.3 13.1 158 61-258 70-230 (390)
298 KOG0309 Conserved WD40 repeat- 98.9 8.6E-09 1.9E-13 97.5 10.1 226 37-304 101-339 (1081)
299 PF15492 Nbas_N: Neuroblastoma 98.8 3.6E-06 7.9E-11 71.5 23.1 233 114-403 3-268 (282)
300 KOG1275 PAB-dependent poly(A) 98.8 1.1E-07 2.3E-12 92.5 15.4 194 64-348 146-340 (1118)
301 PF08450 SGL: SMP-30/Gluconola 98.8 8.2E-06 1.8E-10 72.4 26.3 228 113-382 4-244 (246)
302 PF08450 SGL: SMP-30/Gluconola 98.8 9.2E-06 2E-10 72.1 26.5 223 55-337 4-242 (246)
303 PF00400 WD40: WD domain, G-be 98.8 2.2E-08 4.7E-13 59.8 5.7 37 100-136 3-39 (39)
304 KOG1645 RING-finger-containing 98.7 5E-06 1.1E-10 73.7 21.0 85 101-186 186-271 (463)
305 KOG1920 IkappaB kinase complex 98.7 2.2E-05 4.7E-10 79.6 27.7 268 108-393 68-364 (1265)
306 PF00400 WD40: WD domain, G-be 98.7 3.4E-08 7.4E-13 58.9 5.3 39 40-81 1-39 (39)
307 PRK11138 outer membrane biogen 98.7 1.1E-05 2.4E-10 77.1 24.1 288 64-401 68-360 (394)
308 PF07433 DUF1513: Protein of u 98.7 8.6E-06 1.9E-10 71.5 20.9 189 61-299 58-280 (305)
309 KOG2695 WD40 repeat protein [G 98.7 8.1E-08 1.7E-12 82.9 7.7 156 65-262 225-387 (425)
310 KOG2066 Vacuolar assembly/sort 98.6 3.4E-06 7.5E-11 81.3 19.0 191 51-305 40-234 (846)
311 PF00930 DPPIV_N: Dipeptidyl p 98.6 1.5E-05 3.3E-10 74.7 22.7 268 62-385 1-302 (353)
312 PF07433 DUF1513: Protein of u 98.6 7E-05 1.5E-09 65.9 24.6 244 55-344 9-279 (305)
313 KOG1645 RING-finger-containing 98.6 4.1E-06 8.9E-11 74.2 16.4 98 132-257 175-272 (463)
314 KOG2114 Vacuolar assembly/sort 98.6 3.4E-05 7.5E-10 75.3 22.8 224 115-369 30-262 (933)
315 KOG3617 WD40 and TPR repeat-co 98.5 3E-06 6.5E-11 82.1 15.6 108 59-182 21-132 (1416)
316 KOG1832 HIV-1 Vpr-binding prot 98.5 9.4E-08 2E-12 92.5 4.9 204 141-401 1092-1298(1516)
317 PF13360 PQQ_2: PQQ-like domai 98.5 6.4E-06 1.4E-10 72.9 15.9 224 129-399 2-235 (238)
318 PRK11138 outer membrane biogen 98.5 0.00011 2.4E-09 70.3 25.2 265 65-393 120-393 (394)
319 PF13360 PQQ_2: PQQ-like domai 98.5 1.3E-05 2.8E-10 70.9 17.6 199 119-354 35-234 (238)
320 KOG4649 PQQ (pyrrolo-quinoline 98.5 0.00045 9.7E-09 58.1 24.6 104 64-181 62-165 (354)
321 KOG1832 HIV-1 Vpr-binding prot 98.5 2.2E-07 4.7E-12 90.1 6.0 221 99-375 1092-1313(1516)
322 KOG2114 Vacuolar assembly/sort 98.5 2.3E-05 5.1E-10 76.4 19.5 209 158-397 31-246 (933)
323 KOG1920 IkappaB kinase complex 98.4 9.2E-05 2E-09 75.2 22.7 203 50-306 68-324 (1265)
324 KOG1275 PAB-dependent poly(A) 98.4 6.2E-06 1.4E-10 80.7 13.0 148 63-250 185-341 (1118)
325 KOG3621 WD40 repeat-containing 98.4 0.00016 3.5E-09 69.3 21.8 114 56-182 36-155 (726)
326 KOG1008 Uncharacterized conser 98.3 3.6E-07 7.8E-12 85.6 3.4 207 151-395 57-276 (783)
327 PF11768 DUF3312: Protein of u 98.3 1.7E-05 3.7E-10 74.5 13.4 80 43-140 252-331 (545)
328 KOG2066 Vacuolar assembly/sort 98.2 7.3E-05 1.6E-09 72.5 16.9 146 64-252 82-234 (846)
329 PRK02888 nitrous-oxide reducta 98.2 0.00043 9.4E-09 67.0 21.8 242 62-305 138-405 (635)
330 PF04841 Vps16_N: Vps16, N-ter 98.2 0.0027 5.9E-08 60.5 26.2 221 131-392 62-285 (410)
331 cd00216 PQQ_DH Dehydrogenases 98.2 0.0029 6.3E-08 62.2 26.7 305 65-403 61-433 (488)
332 PF04053 Coatomer_WDAD: Coatom 98.1 0.00039 8.4E-09 66.2 19.2 233 48-350 30-262 (443)
333 KOG3617 WD40 and TPR repeat-co 98.1 5E-05 1.1E-09 74.0 12.8 109 112-251 19-131 (1416)
334 PF14583 Pectate_lyase22: Olig 98.1 0.0037 8.1E-08 57.2 23.5 297 61-394 43-381 (386)
335 PF08596 Lgl_C: Lethal giant l 98.1 0.00092 2E-08 62.8 20.5 125 53-181 4-173 (395)
336 PF14783 BBS2_Mid: Ciliary BBS 98.1 0.00026 5.7E-09 51.8 13.0 104 53-176 2-109 (111)
337 COG0823 TolB Periplasmic compo 98.0 0.00055 1.2E-08 65.0 18.4 190 104-339 188-388 (425)
338 KOG1008 Uncharacterized conser 98.0 2.2E-06 4.7E-11 80.5 2.3 206 51-305 57-276 (783)
339 PF08596 Lgl_C: Lethal giant l 98.0 0.0013 2.8E-08 61.8 20.3 241 152-401 3-297 (395)
340 PF00780 CNH: CNH domain; Int 98.0 0.0069 1.5E-07 54.8 24.5 248 119-403 6-264 (275)
341 PF11768 DUF3312: Protein of u 98.0 0.019 4.1E-07 54.7 29.0 75 272-352 257-331 (545)
342 PF06433 Me-amine-dh_H: Methyl 98.0 0.0023 5.1E-08 57.3 19.4 255 62-354 44-324 (342)
343 PRK02888 nitrous-oxide reducta 97.9 0.0021 4.6E-08 62.5 20.2 71 323-395 323-405 (635)
344 PF03178 CPSF_A: CPSF A subuni 97.9 0.0043 9.4E-08 57.5 21.7 223 130-391 2-262 (321)
345 PF04053 Coatomer_WDAD: Coatom 97.9 0.007 1.5E-07 57.8 23.1 229 103-397 27-265 (443)
346 PF06977 SdiA-regulated: SdiA- 97.9 0.0033 7.2E-08 54.7 18.8 217 145-391 16-247 (248)
347 PF06977 SdiA-regulated: SdiA- 97.9 0.011 2.5E-07 51.5 22.1 222 43-301 14-247 (248)
348 KOG3621 WD40 repeat-containing 97.9 0.00039 8.5E-09 66.8 14.0 162 222-398 35-201 (726)
349 PF00930 DPPIV_N: Dipeptidyl p 97.8 0.0015 3.3E-08 61.3 17.4 250 117-397 1-271 (353)
350 PF02897 Peptidase_S9_N: Proly 97.8 0.028 6E-07 54.3 26.6 252 110-400 125-410 (414)
351 cd00216 PQQ_DH Dehydrogenases 97.7 0.0095 2.1E-07 58.6 22.2 26 331-356 405-430 (488)
352 PF06433 Me-amine-dh_H: Methyl 97.7 0.0077 1.7E-07 54.1 19.2 273 75-403 17-329 (342)
353 PF08553 VID27: VID27 cytoplas 97.7 0.0052 1.1E-07 62.1 19.9 135 73-251 502-647 (794)
354 KOG4640 Anaphase-promoting com 97.7 0.00022 4.7E-09 67.6 8.9 98 49-160 16-115 (665)
355 PF14583 Pectate_lyase22: Olig 97.7 0.0079 1.7E-07 55.1 18.5 226 115-385 42-303 (386)
356 COG0823 TolB Periplasmic compo 97.7 0.003 6.5E-08 60.0 16.6 203 131-382 174-387 (425)
357 COG3391 Uncharacterized conser 97.7 0.027 5.8E-07 53.4 23.0 250 110-401 32-290 (381)
358 TIGR03075 PQQ_enz_alc_DH PQQ-d 97.6 0.089 1.9E-06 52.1 26.2 230 65-307 69-336 (527)
359 PF04841 Vps16_N: Vps16, N-ter 97.6 0.076 1.6E-06 50.8 27.9 63 62-139 37-110 (410)
360 smart00320 WD40 WD40 repeats. 97.6 0.00014 3.1E-09 42.5 4.5 36 101-136 5-40 (40)
361 KOG4640 Anaphase-promoting com 97.5 0.00051 1.1E-08 65.2 9.0 80 107-188 19-99 (665)
362 PF05694 SBP56: 56kDa selenium 97.5 0.028 6E-07 52.1 19.7 218 63-308 85-346 (461)
363 PF03178 CPSF_A: CPSF A subuni 97.5 0.04 8.8E-07 51.0 21.5 186 120-347 42-262 (321)
364 COG3391 Uncharacterized conser 97.5 0.051 1.1E-06 51.6 22.2 202 53-305 76-284 (381)
365 PF00780 CNH: CNH domain; Int 97.4 0.084 1.8E-06 47.7 25.1 237 63-354 5-259 (275)
366 PF14783 BBS2_Mid: Ciliary BBS 97.4 0.012 2.7E-07 43.2 13.3 66 111-181 2-71 (111)
367 smart00320 WD40 WD40 repeats. 97.4 0.00036 7.9E-09 40.7 4.8 39 140-179 2-40 (40)
368 PF14655 RAB3GAP2_N: Rab3 GTPa 97.4 0.12 2.7E-06 48.7 23.2 94 62-160 10-118 (415)
369 KOG2079 Vacuolar assembly/sort 97.3 0.0045 9.8E-08 62.8 13.6 103 64-181 98-203 (1206)
370 PF08553 VID27: VID27 cytoplas 97.3 0.0055 1.2E-07 62.0 13.9 149 231-394 492-647 (794)
371 COG3490 Uncharacterized protei 97.3 0.019 4.1E-07 49.5 14.5 199 61-302 121-346 (366)
372 PF02897 Peptidase_S9_N: Proly 97.1 0.27 5.9E-06 47.5 25.2 117 53-183 123-262 (414)
373 KOG4649 PQQ (pyrrolo-quinoline 97.1 0.14 3.1E-06 43.7 24.1 106 65-187 23-129 (354)
374 KOG2395 Protein involved in va 97.0 0.099 2.1E-06 49.3 18.0 144 63-251 343-500 (644)
375 COG3386 Gluconolactonase [Carb 97.0 0.12 2.5E-06 47.0 18.4 200 157-401 31-249 (307)
376 KOG2444 WD40 repeat protein [G 97.0 0.0018 3.9E-08 53.8 6.2 140 239-395 36-178 (238)
377 COG3204 Uncharacterized protei 97.0 0.16 3.6E-06 44.4 18.0 178 146-352 81-265 (316)
378 PRK13616 lipoprotein LpqB; Pro 97.0 0.21 4.4E-06 50.1 21.2 156 222-386 398-560 (591)
379 PRK10115 protease 2; Provision 97.0 0.59 1.3E-05 48.2 26.9 73 109-183 127-209 (686)
380 PRK13616 lipoprotein LpqB; Pro 96.9 0.14 3.1E-06 51.2 19.7 102 52-177 351-472 (591)
381 PF05694 SBP56: 56kDa selenium 96.9 0.37 8E-06 45.0 22.7 231 119-383 86-393 (461)
382 COG3386 Gluconolactonase [Carb 96.9 0.33 7.1E-06 44.2 20.2 204 62-304 33-243 (307)
383 KOG4441 Proteins containing BT 96.9 0.3 6.5E-06 48.9 21.4 231 63-352 283-548 (571)
384 KOG2395 Protein involved in va 96.9 0.016 3.5E-07 54.3 11.4 152 226-393 339-499 (644)
385 PF12894 Apc4_WD40: Anaphase-p 96.8 0.0051 1.1E-07 37.6 5.4 34 108-142 11-44 (47)
386 PF15390 DUF4613: Domain of un 96.8 0.032 7E-07 53.3 13.2 161 221-400 20-192 (671)
387 PHA02713 hypothetical protein; 96.8 0.23 5E-06 49.8 19.7 68 330-400 462-539 (557)
388 COG3490 Uncharacterized protei 96.7 0.1 2.2E-06 45.3 14.3 107 55-178 72-186 (366)
389 COG3204 Uncharacterized protei 96.7 0.37 8E-06 42.3 17.9 181 105-305 82-264 (316)
390 KOG1897 Damage-specific DNA bi 96.7 0.9 2E-05 46.6 27.9 295 48-394 578-898 (1096)
391 PHA02713 hypothetical protein; 96.6 0.3 6.6E-06 48.9 19.7 66 285-354 463-537 (557)
392 KOG2444 WD40 repeat protein [G 96.6 0.01 2.2E-07 49.5 7.5 105 65-182 70-178 (238)
393 KOG4441 Proteins containing BT 96.6 0.27 5.9E-06 49.2 19.0 234 119-401 284-553 (571)
394 PF12894 Apc4_WD40: Anaphase-p 96.6 0.009 2E-07 36.5 5.3 30 51-83 12-41 (47)
395 KOG1916 Nuclear protein, conta 96.5 0.0061 1.3E-07 60.6 6.6 59 48-120 178-236 (1283)
396 PF14870 PSII_BNR: Photosynthe 96.4 0.66 1.4E-05 41.9 18.4 152 51-248 145-301 (302)
397 KOG3630 Nuclear pore complex, 96.4 0.085 1.8E-06 54.4 13.5 157 221-382 101-261 (1405)
398 PF15390 DUF4613: Domain of un 96.2 0.29 6.3E-06 47.1 15.2 120 106-253 54-188 (671)
399 KOG3630 Nuclear pore complex, 96.2 0.23 5E-06 51.5 15.2 157 152-338 102-261 (1405)
400 TIGR03075 PQQ_enz_alc_DH PQQ-d 96.1 1.7 3.8E-05 43.2 25.8 26 331-356 471-496 (527)
401 KOG2079 Vacuolar assembly/sort 95.8 0.069 1.5E-06 54.7 10.1 101 236-349 102-202 (1206)
402 PF07995 GSDH: Glucose / Sorbo 95.8 1.6 3.4E-05 40.6 24.8 273 52-345 3-330 (331)
403 PF08728 CRT10: CRT10; InterP 95.7 0.41 8.9E-06 48.1 14.8 159 232-393 49-245 (717)
404 KOG2377 Uncharacterized conser 95.6 0.26 5.7E-06 45.7 11.9 164 222-397 24-188 (657)
405 KOG2377 Uncharacterized conser 95.5 1.1 2.3E-05 41.9 15.5 108 49-170 65-173 (657)
406 KOG2280 Vacuolar assembly/sort 95.2 2.2 4.7E-05 42.7 17.1 52 129-183 63-114 (829)
407 PF10647 Gmad1: Lipoprotein Lp 95.1 2.2 4.8E-05 37.8 18.3 160 222-397 25-200 (253)
408 PHA03098 kelch-like protein; P 94.8 2.1 4.6E-05 43.0 17.2 62 119-183 294-368 (534)
409 PF14727 PHTB1_N: PTHB1 N-term 94.7 4.2 9.2E-05 38.8 26.7 149 64-251 36-204 (418)
410 COG5276 Uncharacterized conser 94.6 3 6.4E-05 36.8 26.6 281 50-394 86-369 (370)
411 PF10168 Nup88: Nuclear pore c 94.5 1.7 3.7E-05 44.6 15.5 76 321-397 85-182 (717)
412 PF12234 Rav1p_C: RAVE protein 94.4 1.2 2.5E-05 44.6 13.7 114 223-349 32-155 (631)
413 PHA03098 kelch-like protein; P 94.4 2.2 4.7E-05 42.9 16.3 110 285-401 389-518 (534)
414 PF05096 Glu_cyclase_2: Glutam 94.4 3.3 7.2E-05 36.3 17.6 186 152-382 46-249 (264)
415 smart00036 CNH Domain found in 94.3 4.1 9E-05 37.2 25.4 61 120-183 13-75 (302)
416 PF05096 Glu_cyclase_2: Glutam 94.3 0.93 2E-05 39.7 11.3 115 110-257 46-163 (264)
417 PF12234 Rav1p_C: RAVE protein 94.1 2.1 4.6E-05 42.8 14.7 123 110-251 31-156 (631)
418 KOG2247 WD40 repeat-containing 93.9 0.0099 2.1E-07 55.2 -1.4 151 222-393 36-187 (615)
419 PRK10115 protease 2; Provision 93.8 9.5 0.00021 39.6 27.8 112 54-181 127-255 (686)
420 PF10313 DUF2415: Uncharacteri 93.8 0.28 6.1E-06 29.0 5.0 32 151-182 1-34 (43)
421 KOG1897 Damage-specific DNA bi 93.6 11 0.00023 39.4 30.5 249 50-352 353-615 (1096)
422 KOG1900 Nuclear pore complex, 93.6 5.4 0.00012 42.8 16.9 175 107-305 77-273 (1311)
423 KOG1916 Nuclear protein, conta 93.5 0.089 1.9E-06 52.9 4.2 124 46-180 128-264 (1283)
424 PF10313 DUF2415: Uncharacteri 93.5 0.35 7.6E-06 28.7 5.0 32 364-395 1-34 (43)
425 KOG4499 Ca2+-binding protein R 93.4 3 6.4E-05 35.5 12.0 120 40-170 139-273 (310)
426 PF08728 CRT10: CRT10; InterP 93.3 0.46 1E-05 47.8 8.8 128 51-180 101-245 (717)
427 PF10647 Gmad1: Lipoprotein Lp 93.3 5.6 0.00012 35.3 22.6 113 222-343 67-188 (253)
428 COG5167 VID27 Protein involved 93.2 1.5 3.3E-05 41.6 11.3 147 228-394 475-632 (776)
429 PF14761 HPS3_N: Hermansky-Pud 93.0 2.7 5.9E-05 35.4 11.5 107 287-398 29-167 (215)
430 KOG4499 Ca2+-binding protein R 92.8 5.5 0.00012 34.0 17.1 103 222-330 159-263 (310)
431 PF07569 Hira: TUP1-like enhan 92.7 0.69 1.5E-05 39.8 8.1 72 328-401 18-102 (219)
432 TIGR02604 Piru_Ver_Nterm putat 92.7 3 6.4E-05 39.5 13.1 148 222-383 15-202 (367)
433 PF14870 PSII_BNR: Photosynthe 92.7 7.7 0.00017 35.2 26.3 154 220-391 144-301 (302)
434 PF07995 GSDH: Glucose / Sorbo 92.5 6.7 0.00015 36.5 14.9 112 222-341 3-134 (331)
435 PF07569 Hira: TUP1-like enhan 92.3 1.2 2.6E-05 38.4 9.0 74 62-140 19-97 (219)
436 TIGR02604 Piru_Ver_Nterm putat 92.3 10 0.00023 35.8 23.9 105 51-170 14-142 (367)
437 PHA02790 Kelch-like protein; P 92.2 8.3 0.00018 38.1 15.9 60 119-181 271-339 (480)
438 TIGR03118 PEPCTERM_chp_1 conse 92.0 8.8 0.00019 34.3 23.0 239 110-373 24-307 (336)
439 PF14781 BBS2_N: Ciliary BBSom 91.7 5 0.00011 31.0 12.0 112 114-256 4-130 (136)
440 COG4590 ABC-type uncharacteriz 91.7 7.9 0.00017 36.5 13.7 173 216-399 216-391 (733)
441 PF14761 HPS3_N: Hermansky-Pud 91.7 7.4 0.00016 32.9 15.0 128 121-255 29-167 (215)
442 KOG4460 Nuclear pore complex, 91.6 6.6 0.00014 37.7 13.3 79 321-400 104-204 (741)
443 COG4257 Vgb Streptogramin lyas 91.5 9.1 0.0002 33.6 18.5 236 110-397 63-308 (353)
444 KOG2280 Vacuolar assembly/sort 91.5 14 0.00031 37.3 15.9 168 220-403 83-255 (829)
445 PF14655 RAB3GAP2_N: Rab3 GTPa 91.2 3.6 7.8E-05 39.1 11.5 83 102-184 301-401 (415)
446 KOG1983 Tomosyn and related SN 90.9 9.5 0.00021 41.2 15.5 36 45-83 30-65 (993)
447 PHA02790 Kelch-like protein; P 90.6 19 0.00041 35.6 18.2 62 119-183 318-386 (480)
448 KOG2247 WD40 repeat-containing 90.2 0.05 1.1E-06 50.7 -1.4 249 107-401 33-287 (615)
449 PRK13684 Ycf48-like protein; P 90.2 16 0.00034 34.1 16.8 153 51-250 173-330 (334)
450 PF03022 MRJP: Major royal jel 90.0 15 0.00031 33.4 17.0 197 131-337 35-252 (287)
451 PF11715 Nup160: Nucleoporin N 89.9 1.6 3.4E-05 44.1 8.6 84 63-146 156-256 (547)
452 PLN00033 photosystem II stabil 89.2 19 0.00041 34.4 14.6 112 277-397 241-358 (398)
453 PF07676 PD40: WD40-like Beta 89.1 1.9 4.2E-05 24.9 5.3 30 106-135 6-38 (39)
454 PF14781 BBS2_N: Ciliary BBSom 88.8 9.3 0.0002 29.5 12.9 112 280-397 4-128 (136)
455 KOG1900 Nuclear pore complex, 88.4 9.3 0.0002 41.2 12.7 140 241-395 97-273 (1311)
456 PF13449 Phytase-like: Esteras 88.0 22 0.00049 32.9 14.3 173 221-395 20-250 (326)
457 PLN00033 photosystem II stabil 87.9 26 0.00056 33.5 16.9 110 108-248 280-396 (398)
458 KOG1898 Splicing factor 3b, su 87.4 43 0.00093 35.6 21.3 69 108-176 582-666 (1205)
459 KOG3616 Selective LIM binding 87.4 15 0.00033 37.0 12.8 68 108-181 14-83 (1636)
460 TIGR03118 PEPCTERM_chp_1 conse 87.3 22 0.00047 32.0 18.5 228 152-403 24-288 (336)
461 COG5167 VID27 Protein involved 87.1 14 0.0003 35.6 11.8 121 100-252 502-633 (776)
462 KOG1983 Tomosyn and related SN 87.0 14 0.00031 39.9 13.6 33 109-141 36-68 (993)
463 PF12657 TFIIIC_delta: Transcr 86.9 7.3 0.00016 32.2 9.3 31 109-139 86-122 (173)
464 PF02333 Phytase: Phytase; In 86.7 28 0.00061 32.7 19.4 205 118-352 66-292 (381)
465 PF12768 Rax2: Cortical protei 86.6 11 0.00024 33.9 10.7 94 74-180 15-122 (281)
466 TIGR03074 PQQ_membr_DH membran 86.5 46 0.00099 35.0 24.0 69 119-187 193-284 (764)
467 PF11715 Nup160: Nucleoporin N 86.3 2.2 4.7E-05 43.1 7.1 37 364-401 215-255 (547)
468 TIGR03606 non_repeat_PQQ dehyd 85.6 36 0.00077 33.1 14.2 116 220-341 29-166 (454)
469 PF08801 Nucleoporin_N: Nup133 85.6 30 0.00065 33.5 14.3 31 275-305 190-220 (422)
470 PF12657 TFIIIC_delta: Transcr 85.1 7.8 0.00017 32.0 8.6 32 365-396 87-123 (173)
471 PF14727 PHTB1_N: PTHB1 N-term 85.0 37 0.00081 32.6 26.2 126 49-181 70-204 (418)
472 KOG4659 Uncharacterized conser 84.9 65 0.0014 35.3 21.4 27 222-251 476-502 (1899)
473 PF10395 Utp8: Utp8 family; I 84.6 49 0.0011 33.6 20.7 89 50-139 71-160 (670)
474 COG3823 Glutamine cyclotransfe 84.5 23 0.00051 29.8 13.4 128 239-382 107-247 (262)
475 PF07676 PD40: WD40-like Beta 84.4 4.3 9.3E-05 23.4 5.0 29 220-248 8-38 (39)
476 TIGR02276 beta_rpt_yvtn 40-res 84.3 4.4 9.5E-05 23.7 5.2 31 118-148 1-32 (42)
477 COG5290 IkappaB kinase complex 83.9 33 0.00072 35.1 13.2 71 325-397 251-327 (1243)
478 TIGR03606 non_repeat_PQQ dehyd 83.8 28 0.00061 33.8 12.7 108 276-386 31-167 (454)
479 COG4590 ABC-type uncharacteriz 83.7 5.3 0.00012 37.5 7.5 176 143-354 213-390 (733)
480 PRK13684 Ycf48-like protein; P 83.5 39 0.00084 31.5 27.7 156 220-393 172-330 (334)
481 PF11635 Med16: Mediator compl 83.4 65 0.0014 34.1 20.7 80 219-299 258-345 (753)
482 PF03022 MRJP: Major royal jel 82.4 38 0.00083 30.7 16.0 160 220-382 60-253 (287)
483 COG5276 Uncharacterized conser 82.1 37 0.0008 30.4 21.6 202 108-354 86-289 (370)
484 PF10214 Rrn6: RNA polymerase 81.6 76 0.0017 33.6 22.9 243 94-395 23-277 (765)
485 PF10168 Nup88: Nuclear pore c 81.3 74 0.0016 33.2 28.5 77 108-185 84-183 (717)
486 KOG0918 Selenium-binding prote 80.3 52 0.0011 30.8 13.4 114 130-256 229-347 (476)
487 TIGR03548 mutarot_permut cycli 79.7 52 0.0011 30.5 18.5 22 285-306 171-196 (323)
488 TIGR03074 PQQ_membr_DH membran 79.5 88 0.0019 33.0 23.2 68 120-189 260-352 (764)
489 PF07250 Glyoxal_oxid_N: Glyox 79.5 43 0.00092 29.4 12.2 121 278-401 70-204 (243)
490 COG5290 IkappaB kinase complex 79.3 73 0.0016 32.9 13.7 95 154-287 250-349 (1243)
491 KOG4460 Nuclear pore complex, 79.1 66 0.0014 31.4 13.5 27 109-135 104-130 (741)
492 COG3292 Predicted periplasmic 76.9 81 0.0018 31.2 15.3 70 108-182 164-234 (671)
493 KOG3616 Selective LIM binding 76.5 41 0.00089 34.2 11.2 75 52-146 16-90 (1636)
494 COG3823 Glutamine cyclotransfe 75.5 49 0.0011 28.0 11.6 153 231-403 55-213 (262)
495 KOG1898 Splicing factor 3b, su 74.7 1.3E+02 0.0028 32.4 16.6 109 227-350 940-1048(1205)
496 PF08801 Nucleoporin_N: Nup133 73.9 90 0.0019 30.3 15.3 31 364-395 190-220 (422)
497 PF07250 Glyoxal_oxid_N: Glyox 72.8 66 0.0014 28.2 10.9 147 132-305 48-198 (243)
498 PF13449 Phytase-like: Esteras 72.2 84 0.0018 29.2 22.6 186 151-350 20-249 (326)
499 KOG2109 WD40 repeat protein [G 71.9 9.3 0.0002 37.9 5.7 74 100-174 307-391 (788)
500 PF12768 Rax2: Cortical protei 71.8 60 0.0013 29.3 10.4 98 243-351 16-124 (281)
No 1
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.8e-52 Score=353.82 Aligned_cols=326 Identities=21% Similarity=0.367 Sum_probs=274.8
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.......||.++|.|++| +|+|..||+|+.|.++++||+.+..+ +.+.++|.+.|.|++|+|||
T Consensus 106 rCssS~~GH~e~Vl~~~f---sp~g~~l~tGsGD~TvR~WD~~TeTp-------------~~t~KgH~~WVlcvawsPDg 169 (480)
T KOG0271|consen 106 RCSSSIAGHGEAVLSVQF---SPTGSRLVTGSGDTTVRLWDLDTETP-------------LFTCKGHKNWVLCVAWSPDG 169 (480)
T ss_pred eeccccCCCCCcEEEEEe---cCCCceEEecCCCceEEeeccCCCCc-------------ceeecCCccEEEEEEECCCc
Confidence 334467799999999999 99999999999999999999988755 78889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCee-eecccCcCCCEEEEEeeCCC----CCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 121 TNILTASGDQTIKIWDAEKKKC-TGALMGHTGSIKSLCSHPTN----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h~~~v~~l~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
+.||+|+.||+|++||..+|++ ...+.+|...|++++|.|-. ..+|++++.||.++|||+..+.+
T Consensus 170 k~iASG~~dg~I~lwdpktg~~~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~---------- 239 (480)
T KOG0271|consen 170 KKIASGSKDGSIRLWDPKTGQQIGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTC---------- 239 (480)
T ss_pred chhhccccCCeEEEecCCCCCcccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceE----------
Confidence 9999999999999999999876 46789999999999998732 36899999999999999985543
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
...+.+|..+|+|+.|-- ..++.+|+.|++|++|+...+.... .+.+|.+
T Consensus 240 -----------------~~~lsgHT~~VTCvrwGG--~gliySgS~DrtIkvw~a~dG~~~r-----------~lkGHah 289 (480)
T KOG0271|consen 240 -----------------VRTLSGHTASVTCVRWGG--EGLIYSGSQDRTIKVWRALDGKLCR-----------ELKGHAH 289 (480)
T ss_pred -----------------EEEeccCccceEEEEEcC--CceEEecCCCceEEEEEccchhHHH-----------hhcccch
Confidence 336678999999999964 4577779999999999999877665 5788889
Q ss_pred CeeEEEeC-----------CCC-------------------------CEEEEEecCCeEEEEEcccCCCCceEeeeecee
Q 010390 276 GISSLSQD-----------SNG-------------------------VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI 319 (512)
Q Consensus 276 ~i~~~~~~-----------~~~-------------------------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~ 319 (512)
.|+.++.+ |.+ ..|++|+.|.++.+|+-.. ..+++....+|.
T Consensus 290 wvN~lalsTdy~LRtgaf~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~-~kkpi~rmtgHq- 367 (480)
T KOG0271|consen 290 WVNHLALSTDYVLRTGAFDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFK-SKKPITRMTGHQ- 367 (480)
T ss_pred heeeeeccchhhhhccccccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccc-cccchhhhhchh-
Confidence 99988877 222 3599999999999999754 234566666665
Q ss_pred ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 320 ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 320 ~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
..+..+.||||+++||+++.|..|++|+.++++. +..+++|-+.|+.++|+.|. ++|++|+.|.++++|++.+.++.
T Consensus 368 -~lVn~V~fSPd~r~IASaSFDkSVkLW~g~tGk~-lasfRGHv~~VYqvawsaDs-RLlVS~SkDsTLKvw~V~tkKl~ 444 (480)
T KOG0271|consen 368 -ALVNHVSFSPDGRYIASASFDKSVKLWDGRTGKF-LASFRGHVAAVYQVAWSADS-RLLVSGSKDSTLKVWDVRTKKLK 444 (480)
T ss_pred -hheeeEEECCCccEEEEeecccceeeeeCCCcch-hhhhhhccceeEEEEeccCc-cEEEEcCCCceEEEEEeeeeeec
Confidence 4578899999999999999999999999999987 58999999999999999999 89999999999999999998866
Q ss_pred ccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390 400 SMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD 452 (512)
Q Consensus 400 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 452 (512)
.-+. .+.+..+ .+.|+|||...+.+...
T Consensus 445 ~DLp--------------------Gh~DEVf-----~vDwspDG~rV~sggkd 472 (480)
T KOG0271|consen 445 QDLP--------------------GHADEVF-----AVDWSPDGQRVASGGKD 472 (480)
T ss_pred ccCC--------------------CCCceEE-----EEEecCCCceeecCCCc
Confidence 5321 1233333 67788888777666443
No 2
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=2.5e-48 Score=334.08 Aligned_cols=287 Identities=22% Similarity=0.380 Sum_probs=259.1
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC--CC
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE--DT 121 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~--~~ 121 (512)
....|-+.||..+.| |.|++.||||+.+|.++||+..+. ..+.+|.+|.+.|.++.|+|. +.
T Consensus 169 ~SQ~gd~rPis~~~f---S~ds~~laT~swsG~~kvW~~~~~-------------~~~~~l~gH~~~v~~~~fhP~~~~~ 232 (459)
T KOG0272|consen 169 CSQVGDTRPISGCSF---SRDSKHLATGSWSGLVKVWSVPQC-------------NLLQTLRGHTSRVGAAVFHPVDSDL 232 (459)
T ss_pred hhhccCCCcceeeEe---ecCCCeEEEeecCCceeEeecCCc-------------ceeEEEeccccceeeEEEccCCCcc
Confidence 344567888888888 999999999999999999998765 348889999999999999995 67
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
.|+||+.||++++|++.+..++..+.+|...|..++|+|+| ++|+|++.|.+-++||++++....
T Consensus 233 ~lat~s~Dgtvklw~~~~e~~l~~l~gH~~RVs~VafHPsG-~~L~TasfD~tWRlWD~~tk~ElL-------------- 297 (459)
T KOG0272|consen 233 NLATASADGTVKLWKLSQETPLQDLEGHLARVSRVAFHPSG-KFLGTASFDSTWRLWDLETKSELL-------------- 297 (459)
T ss_pred ceeeeccCCceeeeccCCCcchhhhhcchhhheeeeecCCC-ceeeecccccchhhcccccchhhH--------------
Confidence 89999999999999999999999999999999999999998 999999999999999999876543
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
...+|...|.+++|++||..+++ |+.|..-+|||+++++++. .+.+|..+|.+|+
T Consensus 298 -------------~QEGHs~~v~~iaf~~DGSL~~t-GGlD~~~RvWDlRtgr~im-----------~L~gH~k~I~~V~ 352 (459)
T KOG0272|consen 298 -------------LQEGHSKGVFSIAFQPDGSLAAT-GGLDSLGRVWDLRTGRCIM-----------FLAGHIKEILSVA 352 (459)
T ss_pred -------------hhcccccccceeEecCCCceeec-cCccchhheeecccCcEEE-----------EecccccceeeEe
Confidence 44688999999999999998877 5589999999999999987 5788999999999
Q ss_pred eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
|+|+|..|++|+.|++++|||++.. ..+..+..|. ..|+.+.|+| .|.+|++++.|++++||...+..+ ...+.
T Consensus 353 fsPNGy~lATgs~Dnt~kVWDLR~r--~~ly~ipAH~--nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~-~ksLa 427 (459)
T KOG0272|consen 353 FSPNGYHLATGSSDNTCKVWDLRMR--SELYTIPAHS--NLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSP-LKSLA 427 (459)
T ss_pred ECCCceEEeecCCCCcEEEeeeccc--ccceeccccc--chhhheEecccCCeEEEEcccCcceeeecCCCccc-chhhc
Confidence 9999999999999999999999874 3466666664 5688899998 689999999999999999988776 58899
Q ss_pred cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
||++.|.+++.++++ ..++|++.|.++++|.
T Consensus 428 GHe~kV~s~Dis~d~-~~i~t~s~DRT~KLW~ 458 (459)
T KOG0272|consen 428 GHEGKVISLDISPDS-QAIATSSFDRTIKLWR 458 (459)
T ss_pred CCccceEEEEeccCC-ceEEEeccCceeeecc
Confidence 999999999999999 8999999999999995
No 3
>KOG0271 consensus Notchless-like WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.2e-47 Score=325.76 Aligned_cols=320 Identities=19% Similarity=0.321 Sum_probs=262.2
Q ss_pred cceeeecCcccccccccCCCCCC---------ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECC
Q 010390 13 VRSRELNGFKARKRPYFGDVVTD---------FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR 83 (512)
Q Consensus 13 ~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~ 83 (512)
+.+++=.-.++++.|....++++ +.......+..+||...|.||+| +|||+.||+|+.||.|++||.+
T Consensus 111 ~~GH~e~Vl~~~fsp~g~~l~tGsGD~TvR~WD~~TeTp~~t~KgH~~WVlcvaw---sPDgk~iASG~~dg~I~lwdpk 187 (480)
T KOG0271|consen 111 IAGHGEAVLSVQFSPTGSRLVTGSGDTTVRLWDLDTETPLFTCKGHKNWVLCVAW---SPDGKKIASGSKDGSIRLWDPK 187 (480)
T ss_pred cCCCCCcEEEEEecCCCceEEecCCCceEEeeccCCCCcceeecCCccEEEEEEE---CCCcchhhccccCCeEEEecCC
Confidence 33333334455777754444443 23333556778999999999999 9999999999999999999988
Q ss_pred CCCCccccccccccccceeccccCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEe
Q 010390 84 RKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-----EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCS 158 (512)
Q Consensus 84 ~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 158 (512)
++++ ....+.+|+..|++++|.| ..++|++++.||.|+|||+..+.++..+.+|+.+|+|+.|
T Consensus 188 tg~~------------~g~~l~gH~K~It~Lawep~hl~p~~r~las~skDg~vrIWd~~~~~~~~~lsgHT~~VTCvrw 255 (480)
T KOG0271|consen 188 TGQQ------------IGRALRGHKKWITALAWEPLHLVPPCRRLASSSKDGSVRIWDTKLGTCVRTLSGHTASVTCVRW 255 (480)
T ss_pred CCCc------------ccccccCcccceeEEeecccccCCCccceecccCCCCEEEEEccCceEEEEeccCccceEEEEE
Confidence 7753 3677899999999999987 5678999999999999999999999999999999999999
Q ss_pred eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe---------
Q 010390 159 HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL--------- 229 (512)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--------- 229 (512)
--+ .+|++|+.|++|++|+...+.... .+.+|...|+.++.+
T Consensus 256 GG~--gliySgS~DrtIkvw~a~dG~~~r---------------------------~lkGHahwvN~lalsTdy~LRtga 306 (480)
T KOG0271|consen 256 GGE--GLIYSGSQDRTIKVWRALDGKLCR---------------------------ELKGHAHWVNHLALSTDYVLRTGA 306 (480)
T ss_pred cCC--ceEEecCCCceEEEEEccchhHHH---------------------------hhcccchheeeeeccchhhhhccc
Confidence 754 699999999999999998765544 333444445444443
Q ss_pred --ecCC------------------------EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 230 --KDEV------------------------SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 230 --~~~~------------------------~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
|.+. .-+++|++|.++.+|+....+.... .+.+|..-|+.+.|+
T Consensus 307 f~~t~~~~~~~se~~~~Al~rY~~~~~~~~erlVSgsDd~tlflW~p~~~kkpi~----------rmtgHq~lVn~V~fS 376 (480)
T KOG0271|consen 307 FDHTGRKPKSFSEEQKKALERYEAVLKDSGERLVSGSDDFTLFLWNPFKSKKPIT----------RMTGHQALVNHVSFS 376 (480)
T ss_pred cccccccCCChHHHHHHHHHHHHHhhccCcceeEEecCCceEEEecccccccchh----------hhhchhhheeeEEEC
Confidence 2122 2344577999999999877664443 578888999999999
Q ss_pred CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD 363 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~ 363 (512)
||++++++++.|..|++||.+++ +.+..+.+|. ..+..++|+.|.++|++|+.|.++++|++++.+. ...+.+|.
T Consensus 377 Pd~r~IASaSFDkSVkLW~g~tG--k~lasfRGHv--~~VYqvawsaDsRLlVS~SkDsTLKvw~V~tkKl-~~DLpGh~ 451 (480)
T KOG0271|consen 377 PDGRYIASASFDKSVKLWDGRTG--KFLASFRGHV--AAVYQVAWSADSRLLVSGSKDSTLKVWDVRTKKL-KQDLPGHA 451 (480)
T ss_pred CCccEEEEeecccceeeeeCCCc--chhhhhhhcc--ceeEEEEeccCccEEEEcCCCceEEEEEeeeeee-cccCCCCC
Confidence 99999999999999999998774 4566667664 4577899999999999999999999999998776 57789999
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
+.|.++.|+||| ..+++|+.|..+++|.
T Consensus 452 DEVf~vDwspDG-~rV~sggkdkv~~lw~ 479 (480)
T KOG0271|consen 452 DEVFAVDWSPDG-QRVASGGKDKVLRLWR 479 (480)
T ss_pred ceEEEEEecCCC-ceeecCCCceEEEeec
Confidence 999999999999 8999999999999995
No 4
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=3.8e-43 Score=288.26 Aligned_cols=288 Identities=18% Similarity=0.249 Sum_probs=254.7
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..++||.+.|+++.| ++|.++|++++.||.+.|||.-+... +..+.-....|..++|+|.|+++
T Consensus 49 r~LkGH~~Ki~~~~w---s~Dsr~ivSaSqDGklIvWDs~TtnK-------------~haipl~s~WVMtCA~sPSg~~V 112 (343)
T KOG0286|consen 49 RTLKGHLNKIYAMDW---STDSRRIVSASQDGKLIVWDSFTTNK-------------VHAIPLPSSWVMTCAYSPSGNFV 112 (343)
T ss_pred EEecccccceeeeEe---cCCcCeEEeeccCCeEEEEEcccccc-------------eeEEecCceeEEEEEECCCCCeE
Confidence 678999999999999 99999999999999999999866532 44445566899999999999999
Q ss_pred EEEeCCCcEEEEeCCCC------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 124 LTASGDQTIKIWDAEKK------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
|+|+-|+...||++.+. +..+.+.+|.+.+.|..|.++ ..|++++.|.+..+||+++++...
T Consensus 113 AcGGLdN~Csiy~ls~~d~~g~~~v~r~l~gHtgylScC~f~dD--~~ilT~SGD~TCalWDie~g~~~~---------- 180 (343)
T KOG0286|consen 113 ACGGLDNKCSIYPLSTRDAEGNVRVSRELAGHTGYLSCCRFLDD--NHILTGSGDMTCALWDIETGQQTQ---------- 180 (343)
T ss_pred EecCcCceeEEEecccccccccceeeeeecCccceeEEEEEcCC--CceEecCCCceEEEEEcccceEEE----------
Confidence 99999999999999865 345678999999999999874 689999999999999999765433
Q ss_pred cccccccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
.+.+|.+.|.++.+.| +++.+++ |+-|+..++||++.+.... .+.+|...
T Consensus 181 -----------------~f~GH~gDV~slsl~p~~~ntFvS-g~cD~~aklWD~R~~~c~q-----------tF~ghesD 231 (343)
T KOG0286|consen 181 -----------------VFHGHTGDVMSLSLSPSDGNTFVS-GGCDKSAKLWDVRSGQCVQ-----------TFEGHESD 231 (343)
T ss_pred -----------------EecCCcccEEEEecCCCCCCeEEe-cccccceeeeeccCcceeE-----------eecccccc
Confidence 6678999999999999 6777766 5579999999999998776 58899999
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
|+++.|.|+|.-+++|+.|++.++||++.. ..+..+........+++++||..|++|++|..|.++.+||.-+++. .
T Consensus 232 INsv~ffP~G~afatGSDD~tcRlyDlRaD--~~~a~ys~~~~~~gitSv~FS~SGRlLfagy~d~~c~vWDtlk~e~-v 308 (343)
T KOG0286|consen 232 INSVRFFPSGDAFATGSDDATCRLYDLRAD--QELAVYSHDSIICGITSVAFSKSGRLLFAGYDDFTCNVWDTLKGER-V 308 (343)
T ss_pred cceEEEccCCCeeeecCCCceeEEEeecCC--cEEeeeccCcccCCceeEEEcccccEEEeeecCCceeEeeccccce-E
Confidence 999999999999999999999999999873 4455566666677899999999999999999999999999988776 5
Q ss_pred ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
..+.+|+..|+++..+||| .-++||+.|..++||.
T Consensus 309 g~L~GHeNRvScl~~s~DG-~av~TgSWDs~lriW~ 343 (343)
T KOG0286|consen 309 GVLAGHENRVSCLGVSPDG-MAVATGSWDSTLRIWA 343 (343)
T ss_pred EEeeccCCeeEEEEECCCC-cEEEecchhHheeecC
Confidence 7889999999999999999 8999999999999994
No 5
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=1.7e-41 Score=276.85 Aligned_cols=296 Identities=16% Similarity=0.270 Sum_probs=243.7
Q ss_pred eEeecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
+...+.||++.|.+++. .+. .+.+.+++.|..+.+|++..... .-..+++.+.||+..|..+..++||
T Consensus 7 l~~tl~gh~d~Vt~la~---~~~~~~~l~sasrDk~ii~W~L~~dd~--------~~G~~~r~~~GHsH~v~dv~~s~dg 75 (315)
T KOG0279|consen 7 LRGTLEGHTDWVTALAI---KIKNSDILVSASRDKTIIVWKLTSDDI--------KYGVPVRRLTGHSHFVSDVVLSSDG 75 (315)
T ss_pred eeeeecCCCceEEEEEe---ecCCCceEEEcccceEEEEEEeccCcc--------ccCceeeeeeccceEecceEEccCC
Confidence 45578999999999999 444 57899999999999999876533 2245688999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++.++++.|+++++||+.+++..+.|.+|...|.+++|++++ ..+++|+.|.+|++|++........
T Consensus 76 ~~alS~swD~~lrlWDl~~g~~t~~f~GH~~dVlsva~s~dn-~qivSGSrDkTiklwnt~g~ck~t~------------ 142 (315)
T KOG0279|consen 76 NFALSASWDGTLRLWDLATGESTRRFVGHTKDVLSVAFSTDN-RQIVSGSRDKTIKLWNTLGVCKYTI------------ 142 (315)
T ss_pred ceEEeccccceEEEEEecCCcEEEEEEecCCceEEEEecCCC-ceeecCCCcceeeeeeecccEEEEE------------
Confidence 999999999999999999999999999999999999999998 8999999999999999864432110
Q ss_pred ccccccccccccceecccccccEEEEEEeecC-CEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDE-VSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
....+...|.|+.|+|+. +.++++++.|++|++||+++.+... .+.+|.+.++.
T Consensus 143 --------------~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~-----------~~~gh~~~v~t 197 (315)
T KOG0279|consen 143 --------------HEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT-----------TFIGHSGYVNT 197 (315)
T ss_pred --------------ecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh-----------ccccccccEEE
Confidence 111226789999999984 4445556699999999999987665 47788899999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
++++|||..+++|+.||.+.+||++..+ .+..+.. ...+.+++|+|+.-+|+.+...+ |+|||+.+.... ..+
T Consensus 198 ~~vSpDGslcasGgkdg~~~LwdL~~~k--~lysl~a---~~~v~sl~fspnrywL~~at~~s-IkIwdl~~~~~v-~~l 270 (315)
T KOG0279|consen 198 VTVSPDGSLCASGGKDGEAMLWDLNEGK--NLYSLEA---FDIVNSLCFSPNRYWLCAATATS-IKIWDLESKAVV-EEL 270 (315)
T ss_pred EEECCCCCEEecCCCCceEEEEEccCCc--eeEeccC---CCeEeeEEecCCceeEeeccCCc-eEEEeccchhhh-hhc
Confidence 9999999999999999999999997643 3444433 35688899999988888777554 999999887642 222
Q ss_pred ----ccc-----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 360 ----KSH-----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 360 ----~~h-----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.+. .-...+++|++|| ..|++|-.|+.|++|.+.
T Consensus 271 ~~d~~g~s~~~~~~~clslaws~dG-~tLf~g~td~~irv~qv~ 313 (315)
T KOG0279|consen 271 KLDGIGPSSKAGDPICLSLAWSADG-QTLFAGYTDNVIRVWQVA 313 (315)
T ss_pred cccccccccccCCcEEEEEEEcCCC-cEEEeeecCCcEEEEEee
Confidence 111 3346788999999 899999999999999875
No 6
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=8.6e-42 Score=281.40 Aligned_cols=296 Identities=25% Similarity=0.412 Sum_probs=257.7
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
......+.||++.|+.+.| +|+|.+||+|+.|..|.+|++.... +....+++|+++|..+.|.+|
T Consensus 37 ~ap~m~l~gh~geI~~~~F---~P~gs~~aSgG~Dr~I~LWnv~gdc------------eN~~~lkgHsgAVM~l~~~~d 101 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKF---HPDGSCFASGGSDRAIVLWNVYGDC------------ENFWVLKGHSGAVMELHGMRD 101 (338)
T ss_pred cchhhhcCCCcceEEEEEE---CCCCCeEeecCCcceEEEEeccccc------------cceeeeccccceeEeeeeccC
Confidence 3556678899999999999 9999999999999999999976442 225567899999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
+..|++++.|.+|+.||+++|++++.+++|...|+++.-+..|..++.+++.||++++||++.....+...
T Consensus 102 ~s~i~S~gtDk~v~~wD~~tG~~~rk~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~~t~~--------- 172 (338)
T KOG0265|consen 102 GSHILSCGTDKTVRGWDAETGKRIRKHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAIKTFE--------- 172 (338)
T ss_pred CCEEEEecCCceEEEEecccceeeehhccccceeeecCccccCCeEEEecCCCceEEEEeecccchhhccc---------
Confidence 99999999999999999999999999999999999999777777899999999999999999776655432
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
...+++++.|..++..++++| -|+.|++||++...... .+.+|...|+.
T Consensus 173 -------------------~kyqltAv~f~d~s~qv~sgg-Idn~ikvWd~r~~d~~~-----------~lsGh~DtIt~ 221 (338)
T KOG0265|consen 173 -------------------NKYQLTAVGFKDTSDQVISGG-IDNDIKVWDLRKNDGLY-----------TLSGHADTITG 221 (338)
T ss_pred -------------------cceeEEEEEecccccceeecc-ccCceeeeccccCcceE-----------EeecccCceee
Confidence 234799999999999999855 89999999999888776 58899999999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCC--CceEeeeece--eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDK--GPIQHFSGCR--IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~--~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 355 (512)
+..+++|.++.+-+.|.++++||++.... ..+..+.++. .+.....++|+|+++.+.+|+.|..+++||......
T Consensus 222 lsls~~gs~llsnsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~~~i~ags~dr~vyvwd~~~r~~- 300 (338)
T KOG0265|consen 222 LSLSRYGSFLLSNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNGTKITAGSADRFVYVWDTTSRRI- 300 (338)
T ss_pred EEeccCCCccccccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCCCccccccccceEEEeecccccE-
Confidence 99999999999999999999999976543 2355555543 445566789999999999999999999999987665
Q ss_pred CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
+..+.||.+.|++++|+|.. .+|.+++.|.+|++=.
T Consensus 301 lyklpGh~gsvn~~~Fhp~e-~iils~~sdk~i~lge 336 (338)
T KOG0265|consen 301 LYKLPGHYGSVNEVDFHPTE-PIILSCSSDKTIYLGE 336 (338)
T ss_pred EEEcCCcceeEEEeeecCCC-cEEEEeccCceeEeec
Confidence 57899999999999999999 7999999999998743
No 7
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=5.7e-41 Score=269.22 Aligned_cols=281 Identities=17% Similarity=0.309 Sum_probs=238.8
Q ss_pred cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--ee
Q 010390 66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CT 143 (512)
Q Consensus 66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~ 143 (512)
-+||+++.|-+|++|...++.. .++++...+.|+.+...|+++.||+++.- .|++||+++++ ++
T Consensus 11 viLvsA~YDhTIRfWqa~tG~C-------------~rTiqh~dsqVNrLeiTpdk~~LAaa~~q-hvRlyD~~S~np~Pv 76 (311)
T KOG0315|consen 11 VILVSAGYDHTIRFWQALTGIC-------------SRTIQHPDSQVNRLEITPDKKDLAAAGNQ-HVRLYDLNSNNPNPV 76 (311)
T ss_pred eEEEeccCcceeeeeehhcCeE-------------EEEEecCccceeeEEEcCCcchhhhccCC-eeEEEEccCCCCCce
Confidence 4899999999999999988854 77777778899999999999999988754 59999998875 58
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
.++.+|...|+++.|..++ +.+++|+.||+++|||++...... ...+..+|
T Consensus 77 ~t~e~h~kNVtaVgF~~dg-rWMyTgseDgt~kIWdlR~~~~qR----------------------------~~~~~spV 127 (311)
T KOG0315|consen 77 ATFEGHTKNVTAVGFQCDG-RWMYTGSEDGTVKIWDLRSLSCQR----------------------------NYQHNSPV 127 (311)
T ss_pred eEEeccCCceEEEEEeecC-eEEEecCCCceEEEEeccCcccch----------------------------hccCCCCc
Confidence 8999999999999999988 999999999999999999754332 23556799
Q ss_pred EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEc
Q 010390 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV 303 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 303 (512)
+++..+|+...|++ |..+|.|++||+.+..+.... .......|.++...|||.+|+.+...|..++|++
T Consensus 128 n~vvlhpnQteLis-~dqsg~irvWDl~~~~c~~~l----------iPe~~~~i~sl~v~~dgsml~a~nnkG~cyvW~l 196 (311)
T KOG0315|consen 128 NTVVLHPNQTELIS-GDQSGNIRVWDLGENSCTHEL----------IPEDDTSIQSLTVMPDGSMLAAANNKGNCYVWRL 196 (311)
T ss_pred ceEEecCCcceEEe-ecCCCcEEEEEccCCcccccc----------CCCCCcceeeEEEcCCCcEEEEecCCccEEEEEc
Confidence 99999999999987 668999999999987655432 2233367999999999999999999999999998
Q ss_pred ccCCC----CceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE
Q 010390 304 LQLDK----GPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI 379 (512)
Q Consensus 304 ~~~~~----~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 379 (512)
..... .++..+..| +..+..+.+||++++||+++.|.+++||+.++.-.....+.+|...+..++||.|+ .+|
T Consensus 197 ~~~~~~s~l~P~~k~~ah--~~~il~C~lSPd~k~lat~ssdktv~iwn~~~~~kle~~l~gh~rWvWdc~FS~dg-~Yl 273 (311)
T KOG0315|consen 197 LNHQTASELEPVHKFQAH--NGHILRCLLSPDVKYLATCSSDKTVKIWNTDDFFKLELVLTGHQRWVWDCAFSADG-EYL 273 (311)
T ss_pred cCCCccccceEhhheecc--cceEEEEEECCCCcEEEeecCCceEEEEecCCceeeEEEeecCCceEEeeeeccCc-cEE
Confidence 65322 233334444 46788999999999999999999999999988744456789999999999999999 899
Q ss_pred EEEeCCCcEEEEeCCCCccccccc
Q 010390 380 VTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 380 ~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
+||+.|+.+++|++..++.++...
T Consensus 274 vTassd~~~rlW~~~~~k~v~qy~ 297 (311)
T KOG0315|consen 274 VTASSDHTARLWDLSAGKEVRQYQ 297 (311)
T ss_pred EecCCCCceeecccccCceeeecC
Confidence 999999999999999999777533
No 8
>KOG0272 consensus U4/U6 small nuclear ribonucleoprotein Prp4 (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=8e-42 Score=294.11 Aligned_cols=274 Identities=20% Similarity=0.331 Sum_probs=241.6
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCC-CCCeEEEEeCCCcEEEEeCCCC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT-NSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~-~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
.+...+|..+.|+.|++.|+||+.+|.++||+..+...+++|.+|...|.++.|+|. ....+++|+.||++++|++.+.
T Consensus 172 ~gd~rPis~~~fS~ds~~laT~swsG~~kvW~~~~~~~~~~l~gH~~~v~~~~fhP~~~~~~lat~s~Dgtvklw~~~~e 251 (459)
T KOG0272|consen 172 VGDTRPISGCSFSRDSKHLATGSWSGLVKVWSVPQCNLLQTLRGHTSRVGAAVFHPVDSDLNLATASADGTVKLWKLSQE 251 (459)
T ss_pred ccCCCcceeeEeecCCCeEEEeecCCceeEeecCCcceeEEEeccccceeeEEEccCCCccceeeeccCCceeeeccCCC
Confidence 356789999999999999999999999999999999999999999999999999998 4578999999999999999875
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
..+. .+.+|...|..++|+|+|++|.+++ .|.+-++||+++.....
T Consensus 252 ~~l~---------------------------~l~gH~~RVs~VafHPsG~~L~Tas-fD~tWRlWD~~tk~ElL------ 297 (459)
T KOG0272|consen 252 TPLQ---------------------------DLEGHLARVSRVAFHPSGKFLGTAS-FDSTWRLWDLETKSELL------ 297 (459)
T ss_pred cchh---------------------------hhhcchhhheeeeecCCCceeeecc-cccchhhcccccchhhH------
Confidence 4433 5678889999999999999999855 79999999999988776
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
..++|..+|.+++|.+||.++++|+.|..-+|||++++ ..+..+.+|. ..|..++|+|+|..||+|+.|++
T Consensus 298 -----~QEGHs~~v~~iaf~~DGSL~~tGGlD~~~RvWDlRtg--r~im~L~gH~--k~I~~V~fsPNGy~lATgs~Dnt 368 (459)
T KOG0272|consen 298 -----LQEGHSKGVFSIAFQPDGSLAATGGLDSLGRVWDLRTG--RCIMFLAGHI--KEILSVAFSPNGYHLATGSSDNT 368 (459)
T ss_pred -----hhcccccccceeEecCCCceeeccCccchhheeecccC--cEEEEecccc--cceeeEeECCCceEEeecCCCCc
Confidence 47899999999999999999999999999999999884 4566777754 55888999999999999999999
Q ss_pred EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccc
Q 010390 344 AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLF 423 (512)
Q Consensus 344 i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 423 (512)
++|||++.... ..++.+|..-|+.|.|+|+...+|+|++.|++++||.-.+.++++.+ ..+...|+++...+....+
T Consensus 369 ~kVWDLR~r~~-ly~ipAH~nlVS~Vk~~p~~g~fL~TasyD~t~kiWs~~~~~~~ksL--aGHe~kV~s~Dis~d~~~i 445 (459)
T KOG0272|consen 369 CKVWDLRMRSE-LYTIPAHSNLVSQVKYSPQEGYFLVTASYDNTVKIWSTRTWSPLKSL--AGHEGKVISLDISPDSQAI 445 (459)
T ss_pred EEEeeeccccc-ceecccccchhhheEecccCCeEEEEcccCcceeeecCCCcccchhh--cCCccceEEEEeccCCceE
Confidence 99999998877 68899999999999999965599999999999999999999988873 4455666666666555444
Q ss_pred c
Q 010390 424 M 424 (512)
Q Consensus 424 ~ 424 (512)
+
T Consensus 446 ~ 446 (459)
T KOG0272|consen 446 A 446 (459)
T ss_pred E
Confidence 3
No 9
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=4.4e-42 Score=300.79 Aligned_cols=297 Identities=21% Similarity=0.410 Sum_probs=261.5
Q ss_pred eeEeecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
.+...+.||+..|.++.| .| .+.+|++|+.|+.|+||++... ...++++.+|..+|.+++|+++
T Consensus 205 k~~~~~~gH~kgvsai~~---fp~~~hLlLS~gmD~~vklW~vy~~------------~~~lrtf~gH~k~Vrd~~~s~~ 269 (503)
T KOG0282|consen 205 KLSHNLSGHTKGVSAIQW---FPKKGHLLLSGGMDGLVKLWNVYDD------------RRCLRTFKGHRKPVRDASFNNC 269 (503)
T ss_pred hheeeccCCccccchhhh---ccceeeEEEecCCCceEEEEEEecC------------cceehhhhcchhhhhhhhcccc
Confidence 456789999999999999 66 8899999999999999998753 3559999999999999999999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
|..+++++.|+.|++||+++|+++..+. -...++|+.|+|++.+.|++|+.|+.|+.||+++++.+.
T Consensus 270 g~~fLS~sfD~~lKlwDtETG~~~~~f~-~~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~kvvq------------ 336 (503)
T KOG0282|consen 270 GTSFLSASFDRFLKLWDTETGQVLSRFH-LDKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSGKVVQ------------ 336 (503)
T ss_pred CCeeeeeecceeeeeeccccceEEEEEe-cCCCceeeecCCCCCcEEEEecCCCcEEEEeccchHHHH------------
Confidence 9999999999999999999999999886 345789999999998999999999999999999876443
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
....|-+.|..+.|.+++..++++. +|+.++||+.+..-.... ..........+
T Consensus 337 ---------------eYd~hLg~i~~i~F~~~g~rFissS-Ddks~riWe~~~~v~ik~----------i~~~~~hsmP~ 390 (503)
T KOG0282|consen 337 ---------------EYDRHLGAILDITFVDEGRRFISSS-DDKSVRIWENRIPVPIKN----------IADPEMHTMPC 390 (503)
T ss_pred ---------------HHHhhhhheeeeEEccCCceEeeec-cCccEEEEEcCCCccchh----------hcchhhccCcc
Confidence 4446677999999999999999865 899999999987665543 23444466889
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCC-CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLD-KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
+..+|++.++++-+.|+.|.+|.+...- ......+.+|...++.+.+.|||||++|++|+.||.+.+||.++.+. ...
T Consensus 391 ~~~~P~~~~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG~~l~SGdsdG~v~~wdwkt~kl-~~~ 469 (503)
T KOG0282|consen 391 LTLHPNGKWFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDGRTLCSGDSDGKVNFWDWKTTKL-VSK 469 (503)
T ss_pred eecCCCCCeehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCCCeEEeecCCccEEEeechhhhh-hhc
Confidence 9999999999999999999999975432 23456788999999999999999999999999999999999998776 578
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
+.+|++++..+.|+|..+..+||++.||.|++|+
T Consensus 470 lkah~~~ci~v~wHP~e~Skvat~~w~G~Ikiwd 503 (503)
T KOG0282|consen 470 LKAHDQPCIGVDWHPVEPSKVATCGWDGLIKIWD 503 (503)
T ss_pred cccCCcceEEEEecCCCcceeEecccCceeEecC
Confidence 8999999999999999989999999999999996
No 10
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=100.00 E-value=4.6e-40 Score=297.33 Aligned_cols=391 Identities=36% Similarity=0.599 Sum_probs=300.8
Q ss_pred CCCCCchhhhcccceeeecCcccccccccCCCCCC-ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEE
Q 010390 1 MATPKSESFFLNVRSRELNGFKARKRPYFGDVVTD-FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSL 79 (512)
Q Consensus 1 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~i 79 (512)
|...+...++..+..+ .||..++.+........ ....+.--....|-.-+.++..|++......+||.+.+||.|.+
T Consensus 1 ~~~s~lr~~~h~~~~r--n~~~~r~~~~~~~~~~s~~gi~~~~s~~~~~~p~pPf~~sFs~~~n~eHiLavadE~G~i~l 78 (720)
T KOG0321|consen 1 MESSRLRDFLHGTGAR--NGRYLRYPMDIGKALSSCRGIAPITSYANDGLPVPPFADSFSAAPNKEHILAVADEDGGIIL 78 (720)
T ss_pred Ccchhhhhhhhhcccc--ccceeecchhHhhhhhhhcccccccccccCCCCCCCccccccCCCCccceEEEecCCCceee
Confidence 4556667777777765 78777777765543321 11111111122233344567888776556679999999999999
Q ss_pred EECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--ccCcCCCEEEEE
Q 010390 80 FDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--LMGHTGSIKSLC 157 (512)
Q Consensus 80 wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~ 157 (512)
+|....... .+...+..+..|.+.|..+.|-|....|++++.|.++++||+++.+++.. +.+|.+.|.+++
T Consensus 79 ~dt~~~~fr-------~ee~~lk~~~aH~nAifDl~wapge~~lVsasGDsT~r~Wdvk~s~l~G~~~~~GH~~SvkS~c 151 (720)
T KOG0321|consen 79 FDTKSIVFR-------LEERQLKKPLAHKNAIFDLKWAPGESLLVSASGDSTIRPWDVKTSRLVGGRLNLGHTGSVKSEC 151 (720)
T ss_pred ecchhhhcc-------hhhhhhcccccccceeEeeccCCCceeEEEccCCceeeeeeeccceeecceeecccccccchhh
Confidence 998754321 23445677889999999999999778899999999999999999998877 889999999999
Q ss_pred eeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE---EEEeecCCE
Q 010390 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS---VLYLKDEVS 234 (512)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~---~~~~~~~~~ 234 (512)
|.|.+...|++|+.||.|.|||++.............+............+..+......++...|.+ +.+..|...
T Consensus 152 f~~~n~~vF~tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe~t 231 (720)
T KOG0321|consen 152 FMPTNPAVFCTGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDEST 231 (720)
T ss_pred hccCCCcceeeccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEeccce
Confidence 99999999999999999999999866522211111111111000012333445556667778888887 788889999
Q ss_pred EEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee
Q 010390 235 IATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF 314 (512)
Q Consensus 235 l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 314 (512)
|+++|..|+.|++||++........................++.++..+..|.+|++.+.|+.|+.||+......++..+
T Consensus 232 laSaga~D~~iKVWDLRk~~~~~r~ep~~~~~~~t~skrs~G~~nL~lDssGt~L~AsCtD~sIy~ynm~s~s~sP~~~~ 311 (720)
T KOG0321|consen 232 LASAGAADSTIKVWDLRKNYTAYRQEPRGSDKYPTHSKRSVGQVNLILDSSGTYLFASCTDNSIYFYNMRSLSISPVAEF 311 (720)
T ss_pred eeeccCCCcceEEEeecccccccccCCCcccCccCcccceeeeEEEEecCCCCeEEEEecCCcEEEEeccccCcCchhhc
Confidence 99999889999999999987766554433322222233456789999999999999999999999999999999999999
Q ss_pred eeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 315 SGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 315 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.++....+...-..+|++.+|++|+.|...++|.+.+.+.....+.+|.-.|++++|.|....-++++++|..++||++.
T Consensus 312 sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~~~~~l~Ght~eVt~V~w~pS~~t~v~TcSdD~~~kiW~l~ 391 (720)
T KOG0321|consen 312 SGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEAPPALLLGHTREVTTVRWLPSATTPVATCSDDFRVKIWRLS 391 (720)
T ss_pred cCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccCChhhhhCcceEEEEEeeccccCCCceeeccCcceEEEecc
Confidence 99988888888899999999999999999999999999988889999999999999998765679999999999999997
Q ss_pred CCcccc
Q 010390 395 NSRCSS 400 (512)
Q Consensus 395 ~~~~~~ 400 (512)
++-+..
T Consensus 392 ~~l~e~ 397 (720)
T KOG0321|consen 392 NGLEEI 397 (720)
T ss_pred Cchhhc
Confidence 765443
No 11
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2.1e-40 Score=284.42 Aligned_cols=296 Identities=19% Similarity=0.310 Sum_probs=251.5
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..++.|++.|.-+.| |++|+|||+++.|.+..||++.... ..+...++.+|..+|..+.||||.++|
T Consensus 218 qil~~htdEVWfl~F---S~nGkyLAsaSkD~Taiiw~v~~d~----------~~kl~~tlvgh~~~V~yi~wSPDdryL 284 (519)
T KOG0293|consen 218 QILQDHTDEVWFLQF---SHNGKYLASASKDSTAIIWIVVYDV----------HFKLKKTLVGHSQPVSYIMWSPDDRYL 284 (519)
T ss_pred hhHhhCCCcEEEEEE---cCCCeeEeeccCCceEEEEEEecCc----------ceeeeeeeecccCceEEEEECCCCCeE
Confidence 346678888887777 9999999999999999999976442 235578899999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
++|+.|..+.+||+.+|.+...+. ++...+.+.+|.|++ ..+++|+.|+.+..||+.......-.
T Consensus 285 laCg~~e~~~lwDv~tgd~~~~y~~~~~~S~~sc~W~pDg-~~~V~Gs~dr~i~~wdlDgn~~~~W~------------- 350 (519)
T KOG0293|consen 285 LACGFDEVLSLWDVDTGDLRHLYPSGLGFSVSSCAWCPDG-FRFVTGSPDRTIIMWDLDGNILGNWE------------- 350 (519)
T ss_pred EecCchHheeeccCCcchhhhhcccCcCCCcceeEEccCC-ceeEecCCCCcEEEecCCcchhhccc-------------
Confidence 999999999999999999887774 345789999999998 88999999999999999754321100
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
. .....|.+++..+||+.+++.+ .|..|++++..+..... ......+|+++.+
T Consensus 351 ---------g-----vr~~~v~dlait~Dgk~vl~v~-~d~~i~l~~~e~~~dr~------------lise~~~its~~i 403 (519)
T KOG0293|consen 351 ---------G-----VRDPKVHDLAITYDGKYVLLVT-VDKKIRLYNREARVDRG------------LISEEQPITSFSI 403 (519)
T ss_pred ---------c-----cccceeEEEEEcCCCcEEEEEe-cccceeeechhhhhhhc------------cccccCceeEEEE
Confidence 0 0123699999999999999877 79999999988654431 2334467999999
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKS 361 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~ 361 (512)
+.+++++++.-.+..|++||+. +...+..+.++....++..-+|.-. ..++++|++|+.|+||+..+++. +..+.|
T Consensus 404 S~d~k~~LvnL~~qei~LWDl~--e~~lv~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkl-l~~LsG 480 (519)
T KOG0293|consen 404 SKDGKLALVNLQDQEIHLWDLE--ENKLVRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKL-LAVLSG 480 (519)
T ss_pred cCCCcEEEEEcccCeeEEeecc--hhhHHHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCce-eEeecC
Confidence 9999999999999999999997 4667788889988888888898764 48999999999999999998876 689999
Q ss_pred ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
|...|++|+|+|..+.++|++|+||+||||.....
T Consensus 481 Hs~~vNcVswNP~~p~m~ASasDDgtIRIWg~~~~ 515 (519)
T KOG0293|consen 481 HSKTVNCVSWNPADPEMFASASDDGTIRIWGPSDN 515 (519)
T ss_pred CcceeeEEecCCCCHHHhhccCCCCeEEEecCCcc
Confidence 99999999999999999999999999999987643
No 12
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=4.4e-41 Score=288.23 Aligned_cols=284 Identities=20% Similarity=0.344 Sum_probs=242.1
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
-+.+|..|.| .|+|+.|++|+..|.+.||+...-.. ...+++|..+|+++.|++++.++++|+.
T Consensus 95 vkc~V~~v~W---tPeGRRLltgs~SGEFtLWNg~~fnF-------------EtilQaHDs~Vr~m~ws~~g~wmiSgD~ 158 (464)
T KOG0284|consen 95 VKCPVNVVRW---TPEGRRLLTGSQSGEFTLWNGTSFNF-------------ETILQAHDSPVRTMKWSHNGTWMISGDK 158 (464)
T ss_pred cccceeeEEE---cCCCceeEeecccccEEEecCceeeH-------------HHHhhhhcccceeEEEccCCCEEEEcCC
Confidence 3557888888 99999999999999999999743211 3346799999999999999999999999
Q ss_pred CCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
+|.|++|+..-. .+..++.|. ..|.+++|+|.+ ..|++++.||+|+|||.......
T Consensus 159 gG~iKyWqpnmn-nVk~~~ahh~eaIRdlafSpnD-skF~t~SdDg~ikiWdf~~~kee--------------------- 215 (464)
T KOG0284|consen 159 GGMIKYWQPNMN-NVKIIQAHHAEAIRDLAFSPND-SKFLTCSDDGTIKIWDFRMPKEE--------------------- 215 (464)
T ss_pred CceEEecccchh-hhHHhhHhhhhhhheeccCCCC-ceeEEecCCCeEEEEeccCCchh---------------------
Confidence 999999997544 445555555 899999999977 89999999999999998855432
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
+.+.+|.-.|.+++|+|....+++ |+.|..|++||.+++.++. .+..|+..|..+.|+++++
T Consensus 216 ------~vL~GHgwdVksvdWHP~kgLias-gskDnlVKlWDprSg~cl~-----------tlh~HKntVl~~~f~~n~N 277 (464)
T KOG0284|consen 216 ------RVLRGHGWDVKSVDWHPTKGLIAS-GSKDNLVKLWDPRSGSCLA-----------TLHGHKNTVLAVKFNPNGN 277 (464)
T ss_pred ------heeccCCCCcceeccCCccceeEE-ccCCceeEeecCCCcchhh-----------hhhhccceEEEEEEcCCCC
Confidence 245688999999999999888877 5588999999999999987 5788999999999999999
Q ss_pred EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceeccccCCe
Q 010390 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEV 366 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v 366 (512)
+|++++.|..++++|++. .+.++.+.+|. ..++++.|+|- ..+|.+|+.||.|..|.+...+.....-.+|+..|
T Consensus 278 ~Llt~skD~~~kv~DiR~--mkEl~~~r~Hk--kdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i~~AHd~~i 353 (464)
T KOG0284|consen 278 WLLTGSKDQSCKVFDIRT--MKELFTYRGHK--KDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEIPPAHDGEI 353 (464)
T ss_pred eeEEccCCceEEEEehhH--hHHHHHhhcch--hhheeeccccccccceeeccCCCceEEEeccccccccCCCcccccce
Confidence 999999999999999984 34455666664 45788999996 56788999999999999986666556678999999
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 367 TAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
++++|+|-| .+|++|+.|.++++|.-.
T Consensus 354 wsl~~hPlG-hil~tgsnd~t~rfw~r~ 380 (464)
T KOG0284|consen 354 WSLAYHPLG-HILATGSNDRTVRFWTRN 380 (464)
T ss_pred eeeeccccc-eeEeecCCCcceeeeccC
Confidence 999999999 999999999999999753
No 13
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=8.8e-39 Score=259.94 Aligned_cols=296 Identities=19% Similarity=0.306 Sum_probs=237.5
Q ss_pred eeEeecCCccCCcceEEEEEecCC-CcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-ccCCCcEEEEEEec
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKN-SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-VAHQNAIFDLCWIK 118 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~-~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~h~~~V~~l~~s~ 118 (512)
.+...++||++.+..++| +|- |..||+|+.|..|+||+...+.. . .....+ .+|+..|++++|+|
T Consensus 5 ~~~~~~~gh~~r~W~~aw---hp~~g~ilAscg~Dk~vriw~~~~~~s-~---------~ck~vld~~hkrsVRsvAwsp 71 (312)
T KOG0645|consen 5 ILEQKLSGHKDRVWSVAW---HPGKGVILASCGTDKAVRIWSTSSGDS-W---------TCKTVLDDGHKRSVRSVAWSP 71 (312)
T ss_pred eeEEeecCCCCcEEEEEe---ccCCceEEEeecCCceEEEEecCCCCc-E---------EEEEeccccchheeeeeeecC
Confidence 346778999999999999 887 88999999999999999875221 1 112122 48999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 119 EDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
.|++|++|+.|.++.||.-..+ +++.++.+|...|.|++|+++| ++||+++.|..|-||.+.....
T Consensus 72 ~g~~La~aSFD~t~~Iw~k~~~efecv~~lEGHEnEVK~Vaws~sG-~~LATCSRDKSVWiWe~deddE----------- 139 (312)
T KOG0645|consen 72 HGRYLASASFDATVVIWKKEDGEFECVATLEGHENEVKCVAWSASG-NYLATCSRDKSVWIWEIDEDDE----------- 139 (312)
T ss_pred CCcEEEEeeccceEEEeecCCCceeEEeeeeccccceeEEEEcCCC-CEEEEeeCCCeEEEEEecCCCc-----------
Confidence 9999999999999999986644 7899999999999999999998 9999999999999999875432
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceecccCCCcccccccccccc
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
......+..|...|..+.|+|....|++++ .|.+|++|+-.. ..-...+ .+.+|..
T Consensus 140 -------------fec~aVL~~HtqDVK~V~WHPt~dlL~S~S-YDnTIk~~~~~~dddW~c~~---------tl~g~~~ 196 (312)
T KOG0645|consen 140 -------------FECIAVLQEHTQDVKHVIWHPTEDLLFSCS-YDNTIKVYRDEDDDDWECVQ---------TLDGHEN 196 (312)
T ss_pred -------------EEEEeeeccccccccEEEEcCCcceeEEec-cCCeEEEEeecCCCCeeEEE---------EecCccc
Confidence 233446778899999999999998888855 799999998773 2222221 5777888
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC-C
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ-A 354 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-~ 354 (512)
.|.+++|++.|..|++++.|++++||-.... +. ......+..+.|. ...|++++.|+.|++|.-...- .
T Consensus 197 TVW~~~F~~~G~rl~s~sdD~tv~Iw~~~~~-------~~-~~~sr~~Y~v~W~--~~~IaS~ggD~~i~lf~~s~~~d~ 266 (312)
T KOG0645|consen 197 TVWSLAFDNIGSRLVSCSDDGTVSIWRLYTD-------LS-GMHSRALYDVPWD--NGVIASGGGDDAIRLFKESDSPDE 266 (312)
T ss_pred eEEEEEecCCCceEEEecCCcceEeeeeccC-------cc-hhcccceEeeeec--ccceEeccCCCEEEEEEecCCCCC
Confidence 9999999999999999999999999986421 11 1112234557777 5689999999999999876431 1
Q ss_pred -----CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 355 -----DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 355 -----~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
....-..|+..|++++|.|....+|++|++||.|++|.+.
T Consensus 267 p~~~l~~~~~~aHe~dVNsV~w~p~~~~~L~s~~DDG~v~~W~l~ 311 (312)
T KOG0645|consen 267 PSWNLLAKKEGAHEVDVNSVQWNPKVSNRLASGGDDGIVNFWELE 311 (312)
T ss_pred chHHHHHhhhcccccccceEEEcCCCCCceeecCCCceEEEEEec
Confidence 1123457889999999999756899999999999999875
No 14
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.7e-38 Score=279.64 Aligned_cols=339 Identities=22% Similarity=0.360 Sum_probs=256.8
Q ss_pred ccccccCCCCCCceeee-------eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccc
Q 010390 24 RKRPYFGDVVTDFTEIG-------AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENA 96 (512)
Q Consensus 24 ~~~~~~~~~~~~~~~~~-------~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~ 96 (512)
+-|||..-..+++.... .+....+.|..-|+||.| +|||.++|+.+.||.|.|||-.+++.
T Consensus 157 psRPfRi~T~sdDn~v~ffeGPPFKFk~s~r~HskFV~~VRy---sPDG~~Fat~gsDgki~iyDGktge~--------- 224 (603)
T KOG0318|consen 157 PSRPFRIATGSDDNTVAFFEGPPFKFKSSFREHSKFVNCVRY---SPDGSRFATAGSDGKIYIYDGKTGEK--------- 224 (603)
T ss_pred CCCceEEEeccCCCeEEEeeCCCeeeeecccccccceeeEEE---CCCCCeEEEecCCccEEEEcCCCccE---------
Confidence 46777666555433322 233456679999999999 99999999999999999999887754
Q ss_pred cccceecc---ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee------------------------------
Q 010390 97 EKARISDW---VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT------------------------------ 143 (512)
Q Consensus 97 ~~~~~~~~---~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~------------------------------ 143 (512)
+..+ .+|++.|++++|+||+..++|++.|.+++|||+.+.+++
T Consensus 225 ----vg~l~~~~aHkGsIfalsWsPDs~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~dqqvG~lWqkd~lItVSl~G 300 (603)
T KOG0318|consen 225 ----VGELEDSDAHKGSIFALSWSPDSTQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVEDQQVGCLWQKDHLITVSLSG 300 (603)
T ss_pred ----EEEecCCCCccccEEEEEECCCCceEEEecCCceEEEEEeeccceEEEeecCCchhceEEEEEEeCCeEEEEEcCc
Confidence 4444 499999999999999999999999999999999876532
Q ss_pred -------------ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc----cc--------c-ceeee
Q 010390 144 -------------GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN----CA--------E-SFVFS 197 (512)
Q Consensus 144 -------------~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~----~~--------~-~~~~~ 197 (512)
..+.+|...|+++..+|++ .+|++|+.||.|.-|+...+..-... .. + ..++.
T Consensus 301 ~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~-~~i~SgsyDG~I~~W~~~~g~~~~~~g~~h~nqI~~~~~~~~~~~~t 379 (603)
T KOG0318|consen 301 TINYLNPSDPSVLKVISGHNKSITALTVSPDG-KTIYSGSYDGHINSWDSGSGTSDRLAGKGHTNQIKGMAASESGELFT 379 (603)
T ss_pred EEEEecccCCChhheecccccceeEEEEcCCC-CEEEeeccCceEEEEecCCccccccccccccceEEEEeecCCCcEEE
Confidence 3446799999999999998 99999999999999999876544221 00 0 00110
Q ss_pred ccc--------------cccc--ccc---------c--------cccccee--------cccccccEEEEEEeecCCEEE
Q 010390 198 SAV--------------VKGA--HLL---------S--------QSKRVSR--------RKAASMSITSVLYLKDEVSIA 236 (512)
Q Consensus 198 ~~~--------------~~~~--~~~---------~--------~~~~~~~--------~~~~~~~v~~~~~~~~~~~l~ 236 (512)
... .... .+. . ....+.. ...-.-...+++++|++..++
T Consensus 380 ~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~~~~y~~s~vAv~~~~~~va 459 (603)
T KOG0318|consen 380 IGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSIPIGYESSAVAVSPDGSEVA 459 (603)
T ss_pred EecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceeeccccccceEEEcCCCCEEE
Confidence 000 0000 000 0 0000000 111233567899999999988
Q ss_pred EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390 237 TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG 316 (512)
Q Consensus 237 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 316 (512)
+ |++|+.|++|.+......... ....|..+|++++++||+.+|+++...+.+.+||+.+.+.. .....-
T Consensus 460 V-GG~Dgkvhvysl~g~~l~ee~---------~~~~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s~~~~-~~~w~F 528 (603)
T KOG0318|consen 460 V-GGQDGKVHVYSLSGDELKEEA---------KLLEHRAAITDVAYSPDGAYLAAGDASRKVVLYDVASREVK-TNRWAF 528 (603)
T ss_pred E-ecccceEEEEEecCCccccee---------eeecccCCceEEEECCCCcEEEEeccCCcEEEEEcccCcee-cceeee
Confidence 8 559999999999876643322 46778899999999999999999999999999999765441 111111
Q ss_pred ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 317 CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 317 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+...+.+++|+|+..++|+|+-|-.|.||++..+...+....+|...|+.+.|-.+ ..+++.+.|..|++|++.
T Consensus 529 --HtakI~~~aWsP~n~~vATGSlDt~Viiysv~kP~~~i~iknAH~~gVn~v~wlde--~tvvSsG~Da~iK~W~v~ 602 (603)
T KOG0318|consen 529 --HTAKINCVAWSPNNKLVATGSLDTNVIIYSVKKPAKHIIIKNAHLGGVNSVAWLDE--STVVSSGQDANIKVWNVT 602 (603)
T ss_pred --eeeeEEEEEeCCCceEEEeccccceEEEEEccChhhheEeccccccCceeEEEecC--ceEEeccCcceeEEeccc
Confidence 34568899999999999999999999999999988776777899989999999876 589999999999999974
No 15
>KOG0315 consensus G-protein beta subunit-like protein (contains WD40 repeats) [General function prediction only]
Probab=100.00 E-value=7.3e-38 Score=251.43 Aligned_cols=281 Identities=17% Similarity=0.275 Sum_probs=233.5
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
.|......+--...|+++.. .||++.||+++. ..|++||+++..+ .++.++.+|...|+++.|..
T Consensus 29 tG~C~rTiqh~dsqVNrLei---Tpdk~~LAaa~~-qhvRlyD~~S~np-----------~Pv~t~e~h~kNVtaVgF~~ 93 (311)
T KOG0315|consen 29 TGICSRTIQHPDSQVNRLEI---TPDKKDLAAAGN-QHVRLYDLNSNNP-----------NPVATFEGHTKNVTAVGFQC 93 (311)
T ss_pred cCeEEEEEecCccceeeEEE---cCCcchhhhccC-CeeEEEEccCCCC-----------CceeEEeccCCceEEEEEee
Confidence 35566666656678999999 999999999985 4799999998754 46899999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
+|+++++|++||+++|||++...+.+.++ |..+|+++..+|.. ..|++|..+|.|++||+.+.........
T Consensus 94 dgrWMyTgseDgt~kIWdlR~~~~qR~~~-~~spVn~vvlhpnQ-teLis~dqsg~irvWDl~~~~c~~~liP------- 164 (311)
T KOG0315|consen 94 DGRWMYTGSEDGTVKIWDLRSLSCQRNYQ-HNSPVNTVVLHPNQ-TELISGDQSGNIRVWDLGENSCTHELIP------- 164 (311)
T ss_pred cCeEEEecCCCceEEEEeccCcccchhcc-CCCCcceEEecCCc-ceEEeecCCCcEEEEEccCCccccccCC-------
Confidence 99999999999999999999987777776 77999999999987 8899999999999999987755443222
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.....|.++...|+|..++++. ..|..++|++-+......+.. ...+..|..-+.
T Consensus 165 -------------------e~~~~i~sl~v~~dgsml~a~n-nkG~cyvW~l~~~~~~s~l~P-----~~k~~ah~~~il 219 (311)
T KOG0315|consen 165 -------------------EDDTSIQSLTVMPDGSMLAAAN-NKGNCYVWRLLNHQTASELEP-----VHKFQAHNGHIL 219 (311)
T ss_pred -------------------CCCcceeeEEEcCCCcEEEEec-CCccEEEEEccCCCccccceE-----hhheecccceEE
Confidence 2235799999999999998855 789999999987443332222 225788999999
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
.+.++||+++|++++.|.+++||+..+. ......+.++. .++..++||.|++||++|+.|+.+++|++..++. ...
T Consensus 220 ~C~lSPd~k~lat~ssdktv~iwn~~~~-~kle~~l~gh~--rWvWdc~FS~dg~YlvTassd~~~rlW~~~~~k~-v~q 295 (311)
T KOG0315|consen 220 RCLLSPDVKYLATCSSDKTVKIWNTDDF-FKLELVLTGHQ--RWVWDCAFSADGEYLVTASSDHTARLWDLSAGKE-VRQ 295 (311)
T ss_pred EEEECCCCcEEEeecCCceEEEEecCCc-eeeEEEeecCC--ceEEeeeeccCccEEEecCCCCceeecccccCce-eee
Confidence 9999999999999999999999998765 33444455553 6788999999999999999999999999999887 467
Q ss_pred eccccCCeEEEEeC
Q 010390 359 LKSHDGEVTAVNWC 372 (512)
Q Consensus 359 ~~~h~~~v~~v~~~ 372 (512)
+.+|.....|++..
T Consensus 296 y~gh~K~~vc~~ln 309 (311)
T KOG0315|consen 296 YQGHHKAAVCVALN 309 (311)
T ss_pred cCCcccccEEEEee
Confidence 88888777777653
No 16
>KOG0318 consensus WD40 repeat stress protein/actin interacting protein [Cytoskeleton]
Probab=100.00 E-value=2.5e-37 Score=273.59 Aligned_cols=336 Identities=17% Similarity=0.228 Sum_probs=260.1
Q ss_pred eEeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
-.-++.||...|++++| -|... +++||+.|+.|.+|+- ++.+-..++..|..-|+++.|+|||
T Consensus 139 SvGei~GhSr~ins~~~---KpsRPfRi~T~sdDn~v~ffeG-------------PPFKFk~s~r~HskFV~~VRysPDG 202 (603)
T KOG0318|consen 139 SVGEITGHSRRINSVDF---KPSRPFRIATGSDDNTVAFFEG-------------PPFKFKSSFREHSKFVNCVRYSPDG 202 (603)
T ss_pred ccceeeccceeEeeeec---cCCCceEEEeccCCCeEEEeeC-------------CCeeeeecccccccceeeEEECCCC
Confidence 34477899999999999 66655 7999999999999974 2234467788999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeeccc---CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee--
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALM---GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV-- 195 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~---~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~-- 195 (512)
.++++++.||+|.+||-.+++.+..+. +|++.|.+++|+||+ ..|++++.|.+++|||+.+..+.........+
T Consensus 203 ~~Fat~gsDgki~iyDGktge~vg~l~~~~aHkGsIfalsWsPDs-~~~~T~SaDkt~KIWdVs~~slv~t~~~~~~v~d 281 (603)
T KOG0318|consen 203 SRFATAGSDGKIYIYDGKTGEKVGELEDSDAHKGSIFALSWSPDS-TQFLTVSADKTIKIWDVSTNSLVSTWPMGSTVED 281 (603)
T ss_pred CeEEEecCCccEEEEcCCCccEEEEecCCCCccccEEEEEECCCC-ceEEEecCCceEEEEEeeccceEEEeecCCchhc
Confidence 999999999999999999999999987 899999999999998 89999999999999999988765543322111
Q ss_pred ------------eecccc--cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 196 ------------FSSAVV--KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 196 ------------~~~~~~--~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
...... ..............+.+|...|+++..++++.++++ |+.||.|.-||..++..-.....
T Consensus 282 qqvG~lWqkd~lItVSl~G~in~ln~~d~~~~~~i~GHnK~ITaLtv~~d~~~i~S-gsyDG~I~~W~~~~g~~~~~~g~ 360 (603)
T KOG0318|consen 282 QQVGCLWQKDHLITVSLSGTINYLNPSDPSVLKVISGHNKSITALTVSPDGKTIYS-GSYDGHINSWDSGSGTSDRLAGK 360 (603)
T ss_pred eEEEEEEeCCeEEEEEcCcEEEEecccCCChhheecccccceeEEEEcCCCCEEEe-eccCceEEEEecCCccccccccc
Confidence 000000 001111222345678899999999999999988887 66899999999886543321100
Q ss_pred CCc-------------------------------------------ccc-------------------cccc--------
Q 010390 262 PHA-------------------------------------------ESS-------------------SAKE-------- 271 (512)
Q Consensus 262 ~~~-------------------------------------------~~~-------------------~~~~-------- 271 (512)
.+. .+. ..+.
T Consensus 361 ~h~nqI~~~~~~~~~~~~t~g~Dd~l~~~~~~~~~~t~~~~~~lg~QP~~lav~~d~~~avv~~~~~iv~l~~~~~~~~~ 440 (603)
T KOG0318|consen 361 GHTNQIKGMAASESGELFTIGWDDTLRVISLKDNGYTKSEVVKLGSQPKGLAVLSDGGTAVVACISDIVLLQDQTKVSSI 440 (603)
T ss_pred cccceEEEEeecCCCcEEEEecCCeEEEEecccCcccccceeecCCCceeEEEcCCCCEEEEEecCcEEEEecCCcceee
Confidence 000 000 0000
Q ss_pred ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
.......+++++|++..+++|+.|+.|++|.+............ .+...++.++||||+.+||+|...+.+.+||+.+
T Consensus 441 ~~~y~~s~vAv~~~~~~vaVGG~Dgkvhvysl~g~~l~ee~~~~--~h~a~iT~vaySpd~~yla~~Da~rkvv~yd~~s 518 (603)
T KOG0318|consen 441 PIGYESSAVAVSPDGSEVAVGGQDGKVHVYSLSGDELKEEAKLL--EHRAAITDVAYSPDGAYLAAGDASRKVVLYDVAS 518 (603)
T ss_pred ccccccceEEEcCCCCEEEEecccceEEEEEecCCcccceeeee--cccCCceEEEECCCCcEEEEeccCCcEEEEEccc
Confidence 01123567899999999999999999999999775543332333 3346688999999999999999999999999998
Q ss_pred CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 352 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
.+.......-|...|.+++|+|+. .++|||+-|-.|.||+++....
T Consensus 519 ~~~~~~~w~FHtakI~~~aWsP~n-~~vATGSlDt~Viiysv~kP~~ 564 (603)
T KOG0318|consen 519 REVKTNRWAFHTAKINCVAWSPNN-KLVATGSLDTNVIIYSVKKPAK 564 (603)
T ss_pred CceecceeeeeeeeEEEEEeCCCc-eEEEeccccceEEEEEccChhh
Confidence 877555566699999999999999 8999999999999999987543
No 17
>KOG0279 consensus G protein beta subunit-like protein [Signal transduction mechanisms]
Probab=100.00 E-value=6.5e-38 Score=256.01 Aligned_cols=259 Identities=19% Similarity=0.274 Sum_probs=215.5
Q ss_pred CCceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE
Q 010390 34 TDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD 113 (512)
Q Consensus 34 ~~~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 113 (512)
.++.+.|.....+.||...|..+.. ++||++.++++.|+.+++||+.+++. .+.|.+|...|.+
T Consensus 47 ~dd~~~G~~~r~~~GHsH~v~dv~~---s~dg~~alS~swD~~lrlWDl~~g~~-------------t~~f~GH~~dVls 110 (315)
T KOG0279|consen 47 SDDIKYGVPVRRLTGHSHFVSDVVL---SSDGNFALSASWDGTLRLWDLATGES-------------TRRFVGHTKDVLS 110 (315)
T ss_pred cCccccCceeeeeeccceEecceEE---ccCCceEEeccccceEEEEEecCCcE-------------EEEEEecCCceEE
Confidence 3578889999999999999999999 99999999999999999999988744 7789999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCc--CCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGH--TGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
++|++|.++|++|+.|.+|++||+... +..++..+ .+.|.|+.|+|.. ..+|++++.|++|++||+++.+...
T Consensus 111 va~s~dn~qivSGSrDkTiklwnt~g~-ck~t~~~~~~~~WVscvrfsP~~~~p~Ivs~s~DktvKvWnl~~~~l~~--- 186 (315)
T KOG0279|consen 111 VAFSTDNRQIVSGSRDKTIKLWNTLGV-CKYTIHEDSHREWVSCVRFSPNESNPIIVSASWDKTVKVWNLRNCQLRT--- 186 (315)
T ss_pred EEecCCCceeecCCCcceeeeeeeccc-EEEEEecCCCcCcEEEEEEcCCCCCcEEEEccCCceEEEEccCCcchhh---
Confidence 999999999999999999999997654 44444333 7899999999984 4799999999999999999766544
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
.+.+|.+.++.++++|||...++ |+.||.+.+||++.++... .
T Consensus 187 ------------------------~~~gh~~~v~t~~vSpDGslcas-Ggkdg~~~LwdL~~~k~ly------------s 229 (315)
T KOG0279|consen 187 ------------------------TFIGHSGYVNTVTVSPDGSLCAS-GGKDGEAMLWDLNEGKNLY------------S 229 (315)
T ss_pred ------------------------ccccccccEEEEEECCCCCEEec-CCCCceEEEEEccCCceeE------------e
Confidence 44578899999999999998887 6699999999999998864 4
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-----eceeEEEEEECCCCCEEEEecCCCCEE
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-----IESFYVKSEICPNASHILSGSSDGNAY 345 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~~dg~i~ 345 (512)
..+...|.+++|+|+...|+.+ .+..|+|||+............... .......++|+++|..|++|..|+.|+
T Consensus 230 l~a~~~v~sl~fspnrywL~~a-t~~sIkIwdl~~~~~v~~l~~d~~g~s~~~~~~~clslaws~dG~tLf~g~td~~ir 308 (315)
T KOG0279|consen 230 LEAFDIVNSLCFSPNRYWLCAA-TATSIKIWDLESKAVVEELKLDGIGPSSKAGDPICLSLAWSADGQTLFAGYTDNVIR 308 (315)
T ss_pred ccCCCeEeeEEecCCceeEeec-cCCceEEEeccchhhhhhccccccccccccCCcEEEEEEEcCCCcEEEeeecCCcEE
Confidence 5666789999999997766665 4556999998664322211211111 134567799999999999999999999
Q ss_pred EEecC
Q 010390 346 VWQVN 350 (512)
Q Consensus 346 iw~~~ 350 (512)
+|.+.
T Consensus 309 v~qv~ 313 (315)
T KOG0279|consen 309 VWQVA 313 (315)
T ss_pred EEEee
Confidence 99875
No 18
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=2e-38 Score=268.18 Aligned_cols=291 Identities=21% Similarity=0.343 Sum_probs=257.0
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.+...+.||..+|..|-| +|+-.++++++.|++|++||..+++. ...+++|.+.|.+|+|+..|
T Consensus 99 ~l~~~l~g~r~~vt~v~~---hp~~~~v~~as~d~tikv~D~~tg~~-------------e~~LrGHt~sv~di~~~a~G 162 (406)
T KOG0295|consen 99 NLVQKLAGHRSSVTRVIF---HPSEALVVSASEDATIKVFDTETGEL-------------ERSLRGHTDSVFDISFDASG 162 (406)
T ss_pred Cchhhhhccccceeeeee---ccCceEEEEecCCceEEEEEccchhh-------------hhhhhccccceeEEEEecCc
Confidence 344556788888888888 99999999999999999999988743 77899999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCC-CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 121 TNILTASGDQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
++|++++.|=.+++||.++ .+++..+.+|...|.+++|-|.+ .++++++.|.+|+.|++.++.++.
T Consensus 163 k~l~tcSsDl~~~LWd~~~~~~c~ks~~gh~h~vS~V~f~P~g-d~ilS~srD~tik~We~~tg~cv~------------ 229 (406)
T KOG0295|consen 163 KYLATCSSDLSAKLWDFDTFFRCIKSLIGHEHGVSSVFFLPLG-DHILSCSRDNTIKAWECDTGYCVK------------ 229 (406)
T ss_pred cEEEecCCccchhheeHHHHHHHHHHhcCcccceeeEEEEecC-CeeeecccccceeEEecccceeEE------------
Confidence 9999999999999999987 57888899999999999999998 999999999999999999876554
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
.+.+|...|..+..+.||..+++ ++.|.+|++|-+.+.++.. .+..|..+|.+
T Consensus 230 ---------------t~~~h~ewvr~v~v~~DGti~As-~s~dqtl~vW~~~t~~~k~-----------~lR~hEh~vEc 282 (406)
T KOG0295|consen 230 ---------------TFPGHSEWVRMVRVNQDGTIIAS-CSNDQTLRVWVVATKQCKA-----------ELREHEHPVEC 282 (406)
T ss_pred ---------------eccCchHhEEEEEecCCeeEEEe-cCCCceEEEEEeccchhhh-----------hhhccccceEE
Confidence 56678889999999999988887 5589999999999987665 57888899999
Q ss_pred EEeCCC---------------CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 280 LSQDSN---------------GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 280 ~~~~~~---------------~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
++|.|. ++++.+++.|++|++||+..+ ..+.++.+|. ..+..++|+|.|+||+++.+|+++
T Consensus 283 i~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg--~cL~tL~ghd--nwVr~~af~p~Gkyi~ScaDDktl 358 (406)
T KOG0295|consen 283 IAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTG--MCLFTLVGHD--NWVRGVAFSPGGKYILSCADDKTL 358 (406)
T ss_pred EEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCC--eEEEEEeccc--ceeeeeEEcCCCeEEEEEecCCcE
Confidence 999763 369999999999999999763 5677777764 678999999999999999999999
Q ss_pred EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
++||+++.++. ..+..|+.-|++++|+.+. -+++||+-|.++++|.-
T Consensus 359 rvwdl~~~~cm-k~~~ah~hfvt~lDfh~~~-p~VvTGsVdqt~KvwEc 405 (406)
T KOG0295|consen 359 RVWDLKNLQCM-KTLEAHEHFVTSLDFHKTA-PYVVTGSVDQTVKVWEC 405 (406)
T ss_pred EEEEeccceee-eccCCCcceeEEEecCCCC-ceEEeccccceeeeeec
Confidence 99999998884 6777999999999999998 69999999999999963
No 19
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=4.1e-38 Score=289.45 Aligned_cols=338 Identities=18% Similarity=0.297 Sum_probs=276.3
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCc--EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSH--IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW 116 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~--~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 116 (512)
.+..+..++||.+.|.++.| +|+-+ +|++|..|+.|++||+++... .+..+..|.+.|++++|
T Consensus 136 ~~~~th~fkG~gGvVssl~F---~~~~~~~lL~sg~~D~~v~vwnl~~~~t------------cl~~~~~H~S~vtsL~~ 200 (775)
T KOG0319|consen 136 NGYCTHSFKGHGGVVSSLLF---HPHWNRWLLASGATDGTVRVWNLNDKRT------------CLHTMILHKSAVTSLAF 200 (775)
T ss_pred CCEEEEEecCCCceEEEEEe---CCccchhheeecCCCceEEEEEcccCch------------HHHHHHhhhhheeeeee
Confidence 35677889999999999999 66554 699999999999999986532 37778999999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCe-------------------------------------------------------
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKK------------------------------------------------------- 141 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~------------------------------------------------------- 141 (512)
++|+..+++++.|..+.|||+.+.+
T Consensus 201 ~~d~~~~ls~~RDkvi~vwd~~~~~~l~~lp~ye~~E~vv~l~~~~~~~~~~~~TaG~~g~~~~~d~es~~~~~~~~~~~ 280 (775)
T KOG0319|consen 201 SEDSLELLSVGRDKVIIVWDLVQYKKLKTLPLYESLESVVRLREELGGKGEYIITAGGSGVVQYWDSESGKCVYKQRQSD 280 (775)
T ss_pred ccCCceEEEeccCcEEEEeehhhhhhhheechhhheeeEEEechhcCCcceEEEEecCCceEEEEecccchhhhhhccCC
Confidence 9999999999999999999985422
Q ss_pred ----------------------------------------------------------------------------eeec
Q 010390 142 ----------------------------------------------------------------------------CTGA 145 (512)
Q Consensus 142 ----------------------------------------------------------------------------~~~~ 145 (512)
.-..
T Consensus 281 ~~e~~~~~~~~~~~~~l~vtaeQnl~l~d~~~l~i~k~ivG~ndEI~Dm~~lG~e~~~laVATNs~~lr~y~~~~~~c~i 360 (775)
T KOG0319|consen 281 SEEIDHLLAIESMSQLLLVTAEQNLFLYDEDELTIVKQIVGYNDEILDMKFLGPEESHLAVATNSPELRLYTLPTSYCQI 360 (775)
T ss_pred chhhhcceeccccCceEEEEccceEEEEEccccEEehhhcCCchhheeeeecCCccceEEEEeCCCceEEEecCCCceEE
Confidence 0013
Q ss_pred ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
+.+|...|.++....+| .+|++|+.|.++++|.++++.... .......+|...|.+
T Consensus 361 i~GH~e~vlSL~~~~~g-~llat~sKD~svilWr~~~~~~~~-----------------------~~~a~~~gH~~svga 416 (775)
T KOG0319|consen 361 IPGHTEAVLSLDVWSSG-DLLATGSKDKSVILWRLNNNCSKS-----------------------LCVAQANGHTNSVGA 416 (775)
T ss_pred EeCchhheeeeeecccC-cEEEEecCCceEEEEEecCCcchh-----------------------hhhhhhcccccccce
Confidence 35688888888855555 799999999999999985443322 122345689999999
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
++++..+..++++++.|+++++|++...+.... ............|...|++++++|+.+++++|+.|.+.++|++.
T Consensus 417 va~~~~~asffvsvS~D~tlK~W~l~~s~~~~~--~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT~SqDktaKiW~le- 493 (775)
T KOG0319|consen 417 VAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF--PIVLTCRYTERAHDKDINCVAIAPNDKLIATGSQDKTAKIWDLE- 493 (775)
T ss_pred eeecccCccEEEEecCCceEEEecCCCcccccc--cceehhhHHHHhhcccccceEecCCCceEEecccccceeeeccc-
Confidence 999998888888899999999999987322211 11111112456788999999999999999999999999999997
Q ss_pred CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
+......+.+|. ..+.++.|++..+.+++++.|++|+||.+.+..+ ..++.||+..|..+.|-.++ ..|+|++.|
T Consensus 494 -~~~l~~vLsGH~--RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~fSC-lkT~eGH~~aVlra~F~~~~-~qliS~~ad 568 (775)
T KOG0319|consen 494 -QLRLLGVLSGHT--RGVWCVSFSKNDQLLATCSGDKTVKIWSISTFSC-LKTFEGHTSAVLRASFIRNG-KQLISAGAD 568 (775)
T ss_pred -CceEEEEeeCCc--cceEEEEeccccceeEeccCCceEEEEEecccee-eeeecCccceeEeeeeeeCC-cEEEeccCC
Confidence 456677788876 4478899999999999999999999999999887 58999999999999999999 899999999
Q ss_pred CcEEEEeCCCCcccccccCccccceeeeeccchhcccccC
Q 010390 386 YTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMN 425 (512)
Q Consensus 386 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
|.|++|++.+++|+.++ ..+..++|.+...+....+.+
T Consensus 569 GliKlWnikt~eC~~tl--D~H~DrvWaL~~~~~~~~~~t 606 (775)
T KOG0319|consen 569 GLIKLWNIKTNECEMTL--DAHNDRVWALSVSPLLDMFVT 606 (775)
T ss_pred CcEEEEeccchhhhhhh--hhccceeEEEeecCccceeEe
Confidence 99999999999999984 456678888877777665553
No 20
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=6.9e-38 Score=264.27 Aligned_cols=293 Identities=19% Similarity=0.333 Sum_probs=250.1
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.++..+.||.+.|.||++ .|...+||+|+.|++|+|||+.+++ +..++.+|...|..+++|+..
T Consensus 142 Kl~rVi~gHlgWVr~vav---dP~n~wf~tgs~DrtikIwDlatg~-------------LkltltGhi~~vr~vavS~rH 205 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAV---DPGNEWFATGSADRTIKIWDLATGQ-------------LKLTLTGHIETVRGVAVSKRH 205 (460)
T ss_pred eehhhhhhccceEEEEee---CCCceeEEecCCCceeEEEEcccCe-------------EEEeecchhheeeeeeecccC
Confidence 456678899999999999 9999999999999999999998874 477889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.||++++.|+.|+.||++..+.++.+.+|-..|.|++.+|.. ..|++|+.|.++++||+++...
T Consensus 206 pYlFs~gedk~VKCwDLe~nkvIR~YhGHlS~V~~L~lhPTl-dvl~t~grDst~RvWDiRtr~~--------------- 269 (460)
T KOG0285|consen 206 PYLFSAGEDKQVKCWDLEYNKVIRHYHGHLSGVYCLDLHPTL-DVLVTGGRDSTIRVWDIRTRAS--------------- 269 (460)
T ss_pred ceEEEecCCCeeEEEechhhhhHHHhccccceeEEEeccccc-eeEEecCCcceEEEeeecccce---------------
Confidence 999999999999999999999999999999999999999988 8999999999999999997543
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
+..+.+|..+|.++.+.|.+..+++ |+.|++|++||++.++... ....|...+.++
T Consensus 270 ------------V~~l~GH~~~V~~V~~~~~dpqvit-~S~D~tvrlWDl~agkt~~-----------tlt~hkksvral 325 (460)
T KOG0285|consen 270 ------------VHVLSGHTNPVASVMCQPTDPQVIT-GSHDSTVRLWDLRAGKTMI-----------TLTHHKKSVRAL 325 (460)
T ss_pred ------------EEEecCCCCcceeEEeecCCCceEE-ecCCceEEEeeeccCceeE-----------eeecccceeeEE
Confidence 3367789999999999999999987 6689999999999998776 477888899999
Q ss_pred EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce--
Q 010390 281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK-- 358 (512)
Q Consensus 281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~-- 358 (512)
+.+|....+++++.| .|+-|++..+. .+..+.++ ...+.+++...| .++++|+++|.+.+||.+++......
T Consensus 326 ~lhP~e~~fASas~d-nik~w~~p~g~--f~~nlsgh--~~iintl~~nsD-~v~~~G~dng~~~fwdwksg~nyQ~~~t 399 (460)
T KOG0285|consen 326 CLHPKENLFASASPD-NIKQWKLPEGE--FLQNLSGH--NAIINTLSVNSD-GVLVSGGDNGSIMFWDWKSGHNYQRGQT 399 (460)
T ss_pred ecCCchhhhhccCCc-cceeccCCccc--hhhccccc--cceeeeeeeccC-ceEEEcCCceEEEEEecCcCcccccccc
Confidence 999999999998877 68999986532 33334444 345666777665 47889999999999999987542211
Q ss_pred e--c---cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 359 L--K---SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 359 ~--~---~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
. . ..+..|.+.+|...+ ..|++|..|.+|++|.-+..
T Consensus 400 ~vqpGSl~sEagI~as~fDktg-~rlit~eadKtIk~~keDe~ 441 (460)
T KOG0285|consen 400 IVQPGSLESEAGIFASCFDKTG-SRLITGEADKTIKMYKEDEH 441 (460)
T ss_pred cccCCccccccceeEEeecccC-ceEEeccCCcceEEEecccc
Confidence 1 1 135679999999999 89999999999999986543
No 21
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4.7e-37 Score=260.08 Aligned_cols=301 Identities=17% Similarity=0.223 Sum_probs=246.5
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.-+..+..|+++|++|+. +|+.+++|||+.|..-.||++.++.. ...+.+|+..|+++.|+.+|
T Consensus 55 dS~~tF~~H~~svFavsl---~P~~~l~aTGGgDD~AflW~~~~ge~-------------~~eltgHKDSVt~~~Fshdg 118 (399)
T KOG0296|consen 55 DSLVTFDKHTDSVFAVSL---HPNNNLVATGGGDDLAFLWDISTGEF-------------AGELTGHKDSVTCCSFSHDG 118 (399)
T ss_pred cceeehhhcCCceEEEEe---CCCCceEEecCCCceEEEEEccCCcc-------------eeEecCCCCceEEEEEccCc
Confidence 346678899999999999 99999999999999999999988753 77889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.+||||+.+|.|+||+..++.....+...-..+.=+.|+|.. .+|++|+.||.+.+|.+.+....
T Consensus 119 tlLATGdmsG~v~v~~~stg~~~~~~~~e~~dieWl~WHp~a-~illAG~~DGsvWmw~ip~~~~~-------------- 183 (399)
T KOG0296|consen 119 TLLATGDMSGKVLVFKVSTGGEQWKLDQEVEDIEWLKWHPRA-HILLAGSTDGSVWMWQIPSQALC-------------- 183 (399)
T ss_pred eEEEecCCCccEEEEEcccCceEEEeecccCceEEEEecccc-cEEEeecCCCcEEEEECCCccee--------------
Confidence 999999999999999999999888887666788889999977 99999999999999999864222
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc---------------
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE--------------- 265 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~--------------- 265 (512)
..+.+|..++++=.|.|+|+.+++ +..||+|++|+..+++...........
T Consensus 184 -------------kv~~Gh~~~ct~G~f~pdGKr~~t-gy~dgti~~Wn~ktg~p~~~~~~~e~~~~~~~~~~~~~~~~~ 249 (399)
T KOG0296|consen 184 -------------KVMSGHNSPCTCGEFIPDGKRILT-GYDDGTIIVWNPKTGQPLHKITQAEGLELPCISLNLAGSTLT 249 (399)
T ss_pred -------------eEecCCCCCcccccccCCCceEEE-EecCceEEEEecCCCceeEEecccccCcCCccccccccceeE
Confidence 245678899999999999999998 668999999999998876654311000
Q ss_pred -------------------------ccccccccccC---eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec
Q 010390 266 -------------------------SSSAKETRLHG---ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC 317 (512)
Q Consensus 266 -------------------------~~~~~~~~~~~---i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~ 317 (512)
.......+... |.++.++..-.+.++|+.||+|.|||+.....+ ..-.|
T Consensus 250 ~g~~e~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~R---~~c~h 326 (399)
T KOG0296|consen 250 KGNSEGVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTLR---HICEH 326 (399)
T ss_pred eccCCccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchhh---eeccC
Confidence 00001122222 333444445567899999999999998653322 22222
Q ss_pred eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 318 RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 318 ~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+..++++.|-+ ..+|++++.+|.|+.||.++++. ...+.+|...|.+++++|+. ++++|+|.|++.+|+++.
T Consensus 327 --e~~V~~l~w~~-t~~l~t~c~~g~v~~wDaRtG~l-~~~y~GH~~~Il~f~ls~~~-~~vvT~s~D~~a~VF~v~ 398 (399)
T KOG0296|consen 327 --EDGVTKLKWLN-TDYLLTACANGKVRQWDARTGQL-KFTYTGHQMGILDFALSPQK-RLVVTVSDDNTALVFEVP 398 (399)
T ss_pred --CCceEEEEEcC-cchheeeccCceEEeeeccccce-EEEEecCchheeEEEEcCCC-cEEEEecCCCeEEEEecC
Confidence 34488899998 78999999999999999999987 58899999999999999999 899999999999999875
No 22
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=1.3e-37 Score=289.10 Aligned_cols=255 Identities=14% Similarity=0.261 Sum_probs=217.6
Q ss_pred eEEEEEecCCCcEEEEeeCCCcEEEEECCCCC--C------cccc----------ccccccccceeccccCCCcEEEEEE
Q 010390 55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKL--P------SFAC----------HRENAEKARISDWVAHQNAIFDLCW 116 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~--~------~~~~----------~~~~~~~~~~~~~~~h~~~V~~l~~ 116 (512)
.+.++.|++|+.+||.|..|..|++|.+.... . .... .....+.....++.+|.++|+.+.|
T Consensus 380 ~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH~GPVyg~sF 459 (707)
T KOG0263|consen 380 GVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGHSGPVYGCSF 459 (707)
T ss_pred cceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecCCCceeeeee
Confidence 34444449999999999999999999987421 0 0000 0011223345668899999999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
+|+.++|++++.|++|++|.+.+..++..+++|..+|+.+.|+|.| .+|||++.|++-++|......
T Consensus 460 sPd~rfLlScSED~svRLWsl~t~s~~V~y~GH~~PVwdV~F~P~G-yYFatas~D~tArLWs~d~~~------------ 526 (707)
T KOG0263|consen 460 SPDRRFLLSCSEDSSVRLWSLDTWSCLVIYKGHLAPVWDVQFAPRG-YYFATASHDQTARLWSTDHNK------------ 526 (707)
T ss_pred cccccceeeccCCcceeeeecccceeEEEecCCCcceeeEEecCCc-eEEEecCCCceeeeeecccCC------------
Confidence 9999999999999999999999999999999999999999999998 999999999999999987533
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
..+.+.+|.+.|.|+.|+|+..++++ |+.|.+|++||+.++..+. .+.+|..+
T Consensus 527 ---------------PlRifaghlsDV~cv~FHPNs~Y~aT-GSsD~tVRlWDv~~G~~VR-----------iF~GH~~~ 579 (707)
T KOG0263|consen 527 ---------------PLRIFAGHLSDVDCVSFHPNSNYVAT-GSSDRTVRLWDVSTGNSVR-----------IFTGHKGP 579 (707)
T ss_pred ---------------chhhhcccccccceEEECCccccccc-CCCCceEEEEEcCCCcEEE-----------EecCCCCc
Confidence 34466789999999999999999998 6789999999999998876 57889999
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
|.+++|+|+|++|++|+.||.|.+||+.. ...+..+.+| ...+.++.|+.+|..||+|+.|++|++||+....
T Consensus 580 V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~--~~~v~~l~~H--t~ti~SlsFS~dg~vLasgg~DnsV~lWD~~~~~ 652 (707)
T KOG0263|consen 580 VTALAFSPCGRYLASGDEDGLIKIWDLAN--GSLVKQLKGH--TGTIYSLSFSRDGNVLASGGADNSVRLWDLTKVI 652 (707)
T ss_pred eEEEEEcCCCceEeecccCCcEEEEEcCC--Ccchhhhhcc--cCceeEEEEecCCCEEEecCCCCeEEEEEchhhc
Confidence 99999999999999999999999999976 4456667777 5678899999999999999999999999987643
No 23
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=3e-36 Score=263.26 Aligned_cols=279 Identities=18% Similarity=0.304 Sum_probs=241.7
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..|++++| +.+|.+||+|..||.++||+.... ++.++..|+++|.++.|+.+|.||++++.|+
T Consensus 236 kdVT~L~W---n~~G~~LatG~~~G~~riw~~~G~--------------l~~tl~~HkgPI~slKWnk~G~yilS~~vD~ 298 (524)
T KOG0273|consen 236 KDVTSLDW---NNDGTLLATGSEDGEARIWNKDGN--------------LISTLGQHKGPIFSLKWNKKGTYILSGGVDG 298 (524)
T ss_pred CCcceEEe---cCCCCeEEEeecCcEEEEEecCch--------------hhhhhhccCCceEEEEEcCCCCEEEeccCCc
Confidence 45788888 999999999999999999998654 3778889999999999999999999999999
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (512)
++.+||..++...+.+.-|..+-..+.|-.+ ..|++++.|+.|+|+.+......
T Consensus 299 ttilwd~~~g~~~q~f~~~s~~~lDVdW~~~--~~F~ts~td~~i~V~kv~~~~P~------------------------ 352 (524)
T KOG0273|consen 299 TTILWDAHTGTVKQQFEFHSAPALDVDWQSN--DEFATSSTDGCIHVCKVGEDRPV------------------------ 352 (524)
T ss_pred cEEEEeccCceEEEeeeeccCCccceEEecC--ceEeecCCCceEEEEEecCCCcc------------------------
Confidence 9999999999999999989888788899754 68999999999999999755433
Q ss_pred ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC----
Q 010390 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---- 286 (512)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---- 286 (512)
..+.+|.++|.++.|+|.+..|++++ .|++++||......... .+..|...|..+.|+|+|
T Consensus 353 ---~t~~GH~g~V~alk~n~tg~LLaS~S-dD~TlkiWs~~~~~~~~-----------~l~~Hskei~t~~wsp~g~v~~ 417 (524)
T KOG0273|consen 353 ---KTFIGHHGEVNALKWNPTGSLLASCS-DDGTLKIWSMGQSNSVH-----------DLQAHSKEIYTIKWSPTGPVTS 417 (524)
T ss_pred ---eeeecccCceEEEEECCCCceEEEec-CCCeeEeeecCCCcchh-----------hhhhhccceeeEeecCCCCccC
Confidence 36678999999999999999999855 79999999987766554 578888899999999864
Q ss_pred -----CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390 287 -----VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS 361 (512)
Q Consensus 287 -----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~ 361 (512)
..+++++.|++|++||+.. ..++..+..|. .++.+++|+|+|+++|+|+.||.|++|++..++.. ..+.
T Consensus 418 n~~~~~~l~sas~dstV~lwdv~~--gv~i~~f~kH~--~pVysvafS~~g~ylAsGs~dg~V~iws~~~~~l~-~s~~- 491 (524)
T KOG0273|consen 418 NPNMNLMLASASFDSTVKLWDVES--GVPIHTLMKHQ--EPVYSVAFSPNGRYLASGSLDGCVHIWSTKTGKLV-KSYQ- 491 (524)
T ss_pred CCcCCceEEEeecCCeEEEEEccC--CceeEeeccCC--CceEEEEecCCCcEEEecCCCCeeEeccccchhee-Eeec-
Confidence 6799999999999999876 44566666654 56889999999999999999999999999988763 4444
Q ss_pred ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
-.+.|..++|+.+| .+|..+-.|+.+++-|+.
T Consensus 492 ~~~~Ifel~Wn~~G-~kl~~~~sd~~vcvldlr 523 (524)
T KOG0273|consen 492 GTGGIFELCWNAAG-DKLGACASDGSVCVLDLR 523 (524)
T ss_pred CCCeEEEEEEcCCC-CEEEEEecCCCceEEEec
Confidence 45679999999999 899999999999999875
No 24
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-36 Score=242.64 Aligned_cols=287 Identities=20% Similarity=0.335 Sum_probs=241.7
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..+..|+++|.++.| +-||+|.++++.|.+|++|+...+ ..++++.+|..+|..++.+.|+..+
T Consensus 11 ~~l~~~qgaV~avry---N~dGnY~ltcGsdrtvrLWNp~rg-------------~liktYsghG~EVlD~~~s~Dnskf 74 (307)
T KOG0316|consen 11 SILDCAQGAVRAVRY---NVDGNYCLTCGSDRTVRLWNPLRG-------------ALIKTYSGHGHEVLDAALSSDNSKF 74 (307)
T ss_pred eeecccccceEEEEE---ccCCCEEEEcCCCceEEeeccccc-------------ceeeeecCCCceeeecccccccccc
Confidence 346789999999999 999999999999999999998766 4489999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++|+.|..|.+||+++|+..+.+.+|.+.|+.+.|+.+. ..+++|+.|.++++||-+......
T Consensus 75 ~s~GgDk~v~vwDV~TGkv~Rr~rgH~aqVNtV~fNees-SVv~SgsfD~s~r~wDCRS~s~eP---------------- 137 (307)
T KOG0316|consen 75 ASCGGDKAVQVWDVNTGKVDRRFRGHLAQVNTVRFNEES-SVVASGSFDSSVRLWDCRSRSFEP---------------- 137 (307)
T ss_pred ccCCCCceEEEEEcccCeeeeecccccceeeEEEecCcc-eEEEeccccceeEEEEcccCCCCc----------------
Confidence 999999999999999999999999999999999999877 899999999999999998765332
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
+..+......|.++... ...+++|+.||+++.||++.++... .....+|+++.|+
T Consensus 138 ---------iQildea~D~V~Si~v~---~heIvaGS~DGtvRtydiR~G~l~s-------------Dy~g~pit~vs~s 192 (307)
T KOG0316|consen 138 ---------IQILDEAKDGVSSIDVA---EHEIVAGSVDGTVRTYDIRKGTLSS-------------DYFGHPITSVSFS 192 (307)
T ss_pred ---------cchhhhhcCceeEEEec---ccEEEeeccCCcEEEEEeecceeeh-------------hhcCCcceeEEec
Confidence 22334455678887764 2345568899999999999987643 3334679999999
Q ss_pred CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD 363 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~ 363 (512)
++++..++++.|+++++.|-.+ .+.+..+.+|....+-...+++.....+++|++||.|++||+..... +..+..|.
T Consensus 193 ~d~nc~La~~l~stlrLlDk~t--GklL~sYkGhkn~eykldc~l~qsdthV~sgSEDG~Vy~wdLvd~~~-~sk~~~~~ 269 (307)
T KOG0316|consen 193 KDGNCSLASSLDSTLRLLDKET--GKLLKSYKGHKNMEYKLDCCLNQSDTHVFSGSEDGKVYFWDLVDETQ-ISKLSVVS 269 (307)
T ss_pred CCCCEEEEeeccceeeecccch--hHHHHHhcccccceeeeeeeecccceeEEeccCCceEEEEEecccee-eeeeccCC
Confidence 9999999999999999999765 45677888888888888889999999999999999999999988766 45666666
Q ss_pred CC-eEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 364 GE-VTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 364 ~~-v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
.. |.+++++|.- ..|+++.. +.+..|--
T Consensus 270 ~v~v~dl~~hp~~-~~f~~A~~-~~~~~~~~ 298 (307)
T KOG0316|consen 270 TVIVTDLSCHPTM-DDFITATG-HGDLFWYQ 298 (307)
T ss_pred ceeEEeeecccCc-cceeEecC-Cceeceee
Confidence 66 8999999988 44555543 34566643
No 25
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.6e-36 Score=278.15 Aligned_cols=296 Identities=14% Similarity=0.246 Sum_probs=244.4
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCC-CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDED-GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~d-g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
..+|..++| +..|++||.|+.. |.+.||+.+.... +...++|...+++++++|||+++|+|+.
T Consensus 307 ~~~I~t~~~---N~tGDWiA~g~~klgQLlVweWqsEsY-------------VlKQQgH~~~i~~l~YSpDgq~iaTG~e 370 (893)
T KOG0291|consen 307 DQKILTVSF---NSTGDWIAFGCSKLGQLLVWEWQSESY-------------VLKQQGHSDRITSLAYSPDGQLIATGAE 370 (893)
T ss_pred cceeeEEEe---cccCCEEEEcCCccceEEEEEeeccce-------------eeeccccccceeeEEECCCCcEEEeccC
Confidence 466777877 8889999999755 8999999977533 6667899999999999999999999999
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
||.|+|||...+-|..+|..|+..|+.+.|+..+ +.+++.+.||+|+.||+........+..
T Consensus 371 DgKVKvWn~~SgfC~vTFteHts~Vt~v~f~~~g-~~llssSLDGtVRAwDlkRYrNfRTft~----------------- 432 (893)
T KOG0291|consen 371 DGKVKVWNTQSGFCFVTFTEHTSGVTAVQFTARG-NVLLSSSLDGTVRAWDLKRYRNFRTFTS----------------- 432 (893)
T ss_pred CCcEEEEeccCceEEEEeccCCCceEEEEEEecC-CEEEEeecCCeEEeeeecccceeeeecC-----------------
Confidence 9999999999999999999999999999999988 9999999999999999986655443322
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF 288 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (512)
.......|++..|.|..+++.+-+.-.|.+|++.+++.+. .+.+|.++|.+++|+|++..
T Consensus 433 ---------P~p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGqllD-----------iLsGHEgPVs~l~f~~~~~~ 492 (893)
T KOG0291|consen 433 ---------PEPIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQLLD-----------ILSGHEGPVSGLSFSPDGSL 492 (893)
T ss_pred ---------CCceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCeeee-----------hhcCCCCcceeeEEccccCe
Confidence 1233577888889898877744333479999999999876 58999999999999999999
Q ss_pred EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC------------
Q 010390 289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP------------ 356 (512)
Q Consensus 289 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~------------ 356 (512)
|++++.|.+|++||+-.... .+ +...+...+..++|+|+|+.|++++-||.|.+||.......-
T Consensus 493 LaS~SWDkTVRiW~if~s~~-~v---Etl~i~sdvl~vsfrPdG~elaVaTldgqItf~d~~~~~q~~~IdgrkD~~~gR 568 (893)
T KOG0291|consen 493 LASGSWDKTVRIWDIFSSSG-TV---ETLEIRSDVLAVSFRPDGKELAVATLDGQITFFDIKEAVQVGSIDGRKDLSGGR 568 (893)
T ss_pred EEeccccceEEEEEeeccCc-ee---eeEeeccceeEEEEcCCCCeEEEEEecceEEEEEhhhceeeccccchhhccccc
Confidence 99999999999999865321 22 222334567889999999999999999999999987543210
Q ss_pred ---cee----ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390 357 ---IKL----KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP 404 (512)
Q Consensus 357 ---~~~----~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 404 (512)
-.+ .......+.+++++|| ..+++||..+.|++|++.++-+++.+..
T Consensus 569 ~~~D~~ta~~sa~~K~Ftti~ySaDG-~~IlAgG~sn~iCiY~v~~~vllkkfqi 622 (893)
T KOG0291|consen 569 KETDRITAENSAKGKTFTTICYSADG-KCILAGGESNSICIYDVPEGVLLKKFQI 622 (893)
T ss_pred cccceeehhhcccCCceEEEEEcCCC-CEEEecCCcccEEEEECchhheeeeEEe
Confidence 001 1123578999999999 8999999999999999999988877543
No 26
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=3.2e-36 Score=288.13 Aligned_cols=296 Identities=23% Similarity=0.435 Sum_probs=245.6
Q ss_pred EeecCCc-cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 43 TVEHHGE-ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 43 ~~~~~gh-~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
...+.+| ...|.++.| +++|++|++++.++.+++|+...... .....+.+|...|++++|+|+++
T Consensus 151 ~~~~~~~~~~sv~~~~f---s~~g~~l~~~~~~~~i~~~~~~~~~~-----------~~~~~l~~h~~~v~~~~fs~d~~ 216 (456)
T KOG0266|consen 151 EQTLAGHECPSVTCVDF---SPDGRALAAASSDGLIRIWKLEGIKS-----------NLLRELSGHTRGVSDVAFSPDGS 216 (456)
T ss_pred eeeecccccCceEEEEE---cCCCCeEEEccCCCcEEEeecccccc-----------hhhccccccccceeeeEECCCCc
Confidence 3344443 566677666 99999999999999999999855431 23556689999999999999999
Q ss_pred EEEEEeCCCcEEEEeC-CCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 122 NILTASGDQTIKIWDA-EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~-~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++++++.|++|+|||+ ..+..++++.+|...|++++|+|++ +++++|+.|++|++||+++++..
T Consensus 217 ~l~s~s~D~tiriwd~~~~~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~-------------- 281 (456)
T KOG0266|consen 217 YLLSGSDDKTLRIWDLKDDGRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECV-------------- 281 (456)
T ss_pred EEEEecCCceEEEeeccCCCeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEE--------------
Confidence 9999999999999999 5568999999999999999999999 99999999999999999975443
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce--ecccCCCccccccccccccCee
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ--ITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~--~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
..+.+|...|.+++|++++..++++ +.|+.|++||+.++... .... ...... .++
T Consensus 282 -------------~~l~~hs~~is~~~f~~d~~~l~s~-s~d~~i~vwd~~~~~~~~~~~~~--------~~~~~~-~~~ 338 (456)
T KOG0266|consen 282 -------------RKLKGHSDGISGLAFSPDGNLLVSA-SYDGTIRVWDLETGSKLCLKLLS--------GAENSA-PVT 338 (456)
T ss_pred -------------EeeeccCCceEEEEECCCCCEEEEc-CCCccEEEEECCCCceeeeeccc--------CCCCCC-cee
Confidence 3677899999999999999999986 57999999999998842 2211 122222 699
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceec-eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE-SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~ 357 (512)
++.|+|++.++++++.|+.+++||+... .....+.++... ..+.+...++.+.++++|+.|+.|++|++.++.. ..
T Consensus 339 ~~~fsp~~~~ll~~~~d~~~~~w~l~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~sg~~d~~v~~~~~~s~~~-~~ 415 (456)
T KOG0266|consen 339 SVQFSPNGKYLLSASLDRTLKLWDLRSG--KSVGTYTGHSNLVRCIFSPTLSTGGKLIYSGSEDGSVYVWDSSSGGI-LQ 415 (456)
T ss_pred EEEECCCCcEEEEecCCCeEEEEEccCC--cceeeecccCCcceeEecccccCCCCeEEEEeCCceEEEEeCCccch-hh
Confidence 9999999999999999999999999763 344455555443 2344556688999999999999999999998655 56
Q ss_pred eeccc-cCCeEEEEeCCCCCCeEEEEe--CCCcEEEEeCC
Q 010390 358 KLKSH-DGEVTAVNWCPNEAGKIVTSS--DDYTVRLWSLE 394 (512)
Q Consensus 358 ~~~~h-~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~ 394 (512)
.+.+| ...+..+.|++.. .++++++ .|+.+++|..+
T Consensus 416 ~l~~h~~~~~~~~~~~~~~-~~~~s~s~~~d~~~~~w~~~ 454 (456)
T KOG0266|consen 416 RLEGHSKAAVSDLSSHPTE-NLIASSSFEGDGLIRLWKYD 454 (456)
T ss_pred hhcCCCCCceeccccCCCc-CeeeecCcCCCceEEEecCC
Confidence 78899 8999999999998 8999998 79999999764
No 27
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=100.00 E-value=1.1e-37 Score=250.61 Aligned_cols=296 Identities=19% Similarity=0.342 Sum_probs=253.4
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
...-.||+.||..++|....|+|-+|++++.||.-.+-+-+++.- +.++.+|++.|++.....+...
T Consensus 7 pl~c~ghtrpvvdl~~s~itp~g~flisa~kd~~pmlr~g~tgdw-------------igtfeghkgavw~~~l~~na~~ 73 (334)
T KOG0278|consen 7 PLTCHGHTRPVVDLAFSPITPDGYFLISASKDGKPMLRNGDTGDW-------------IGTFEGHKGAVWSATLNKNATR 73 (334)
T ss_pred ceEEcCCCcceeEEeccCCCCCceEEEEeccCCCchhccCCCCCc-------------EEeeeccCcceeeeecCchhhh
Confidence 345679999999999999999999999999999988877666644 8899999999999999988888
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
-++++.|-+-+|||.-+|..+.++. |..-|.+++|+.+. +.|++|+.+..+++||++..+...
T Consensus 74 aasaaadftakvw~a~tgdelhsf~-hkhivk~~af~~ds-~~lltgg~ekllrvfdln~p~App--------------- 136 (334)
T KOG0278|consen 74 AASAAADFTAKVWDAVTGDELHSFE-HKHIVKAVAFSQDS-NYLLTGGQEKLLRVFDLNRPKAPP--------------- 136 (334)
T ss_pred hhhhcccchhhhhhhhhhhhhhhhh-hhheeeeEEecccc-hhhhccchHHHhhhhhccCCCCCc---------------
Confidence 8899999999999999999999997 88899999999987 899999999999999998765433
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
..+.+|.+.|..+.|....+.++++ ++|++|++||.+++..+..... ..+|+++.+
T Consensus 137 -----------~E~~ghtg~Ir~v~wc~eD~~iLSS-add~tVRLWD~rTgt~v~sL~~------------~s~VtSlEv 192 (334)
T KOG0278|consen 137 -----------KEISGHTGGIRTVLWCHEDKCILSS-ADDKTVRLWDHRTGTEVQSLEF------------NSPVTSLEV 192 (334)
T ss_pred -----------hhhcCCCCcceeEEEeccCceEEee-ccCCceEEEEeccCcEEEEEec------------CCCCcceee
Confidence 2456889999999999999999986 5899999999999998765433 345999999
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
+++|.+|.++ ..+.|.+||..... .++ .......+.+...+|+...+++|++|+.++.||..++........+|
T Consensus 193 s~dG~ilTia-~gssV~Fwdaksf~--~lK---s~k~P~nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~nkgh 266 (334)
T KOG0278|consen 193 SQDGRILTIA-YGSSVKFWDAKSFG--LLK---SYKMPCNVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSYNKGH 266 (334)
T ss_pred ccCCCEEEEe-cCceeEEecccccc--cee---eccCccccccccccCCCceEEecCcceEEEEEeccCCceeeecccCC
Confidence 9999987766 56789999976532 222 22333456778999999999999999999999999998754335899
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
-++|.|+.|+|+| ...++||.||+|++|.+..++..
T Consensus 267 ~gpVhcVrFSPdG-E~yAsGSEDGTirlWQt~~~~~~ 302 (334)
T KOG0278|consen 267 FGPVHCVRFSPDG-ELYASGSEDGTIRLWQTTPGKTY 302 (334)
T ss_pred CCceEEEEECCCC-ceeeccCCCceEEEEEecCCCch
Confidence 9999999999999 89999999999999999877643
No 28
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=1.4e-37 Score=261.44 Aligned_cols=279 Identities=19% Similarity=0.314 Sum_probs=234.4
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
....|+|+.| |...+++|..|.+|+|||.++... +..+.||.+.|.|+.| +.+.|++|+.
T Consensus 196 ~skgVYClQY-----DD~kiVSGlrDnTikiWD~n~~~c-------------~~~L~GHtGSVLCLqy--d~rviisGSS 255 (499)
T KOG0281|consen 196 NSKGVYCLQY-----DDEKIVSGLRDNTIKIWDKNSLEC-------------LKILTGHTGSVLCLQY--DERVIVSGSS 255 (499)
T ss_pred cCCceEEEEe-----cchhhhcccccCceEEeccccHHH-------------HHhhhcCCCcEEeeec--cceEEEecCC
Confidence 4566899998 778899999999999999877543 7788999999999999 5679999999
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
|.+|+|||+++++++.++.+|...|..+.|+. .++++++.|.++.+||+.....
T Consensus 256 DsTvrvWDv~tge~l~tlihHceaVLhlrf~n---g~mvtcSkDrsiaVWdm~sps~----------------------- 309 (499)
T KOG0281|consen 256 DSTVRVWDVNTGEPLNTLIHHCEAVLHLRFSN---GYMVTCSKDRSIAVWDMASPTD----------------------- 309 (499)
T ss_pred CceEEEEeccCCchhhHHhhhcceeEEEEEeC---CEEEEecCCceeEEEeccCchH-----------------------
Confidence 99999999999999999999999999999984 7999999999999999986542
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF 288 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (512)
......+.+|...|+.+.|+. +++++++ .|.+|++|++.+...+. .+.+|..+|-|+.+ .+++
T Consensus 310 -it~rrVLvGHrAaVNvVdfd~--kyIVsAS-gDRTikvW~~st~efvR-----------tl~gHkRGIAClQY--r~rl 372 (499)
T KOG0281|consen 310 -ITLRRVLVGHRAAVNVVDFDD--KYIVSAS-GDRTIKVWSTSTCEFVR-----------TLNGHKRGIACLQY--RDRL 372 (499)
T ss_pred -HHHHHHHhhhhhheeeecccc--ceEEEec-CCceEEEEeccceeeeh-----------hhhcccccceehhc--cCeE
Confidence 122335678999999999964 4666644 69999999999998876 57889999988877 5789
Q ss_pred EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC--------Cceec
Q 010390 289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD--------PIKLK 360 (512)
Q Consensus 289 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~--------~~~~~ 360 (512)
+++|+.|.+|++||+.. ...+..+++|. ..+.++.|. .+.|++|+.||+|++||+..+..+ +..+.
T Consensus 373 vVSGSSDntIRlwdi~~--G~cLRvLeGHE--eLvRciRFd--~krIVSGaYDGkikvWdl~aaldpra~~~~~Cl~~lv 446 (499)
T KOG0281|consen 373 VVSGSSDNTIRLWDIEC--GACLRVLEGHE--ELVRCIRFD--NKRIVSGAYDGKIKVWDLQAALDPRAPASTLCLRTLV 446 (499)
T ss_pred EEecCCCceEEEEeccc--cHHHHHHhchH--Hhhhheeec--CceeeeccccceEEEEecccccCCcccccchHHHhhh
Confidence 99999999999999976 34566677764 456667774 578999999999999999876442 34567
Q ss_pred cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
.|.+.|..+.|.. ..+++++.|.+|.|||+.++-.-
T Consensus 447 ~hsgRVFrLQFD~---fqIvsssHddtILiWdFl~~~~~ 482 (499)
T KOG0281|consen 447 EHSGRVFRLQFDE---FQIISSSHDDTILIWDFLNGPPS 482 (499)
T ss_pred hccceeEEEeecc---eEEEeccCCCeEEEEEcCCCCcc
Confidence 7999999999954 78999999999999999987643
No 29
>KOG0273 consensus Beta-transducin family (WD-40 repeat) protein [Chromatin structure and dynamics]
Probab=100.00 E-value=1.1e-36 Score=266.13 Aligned_cols=301 Identities=17% Similarity=0.232 Sum_probs=239.9
Q ss_pred CCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccc----cCCCcEEEEEEecCCC
Q 010390 47 HGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV----AHQNAIFDLCWIKEDT 121 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~----~h~~~V~~l~~s~~~~ 121 (512)
.+|+.+|.+.+| +|-.. ++|+|+.|-..++|++......... ....+....+- .....|++++|+.+|.
T Consensus 175 l~~~~~V~~~~W---nP~~~~llasg~~~s~ari~~l~e~~~~~~~---q~~lrh~~~~~~~s~~~nkdVT~L~Wn~~G~ 248 (524)
T KOG0273|consen 175 LRHESEVFICAW---NPLRDGLLASGSGDSTARIWNLLENSNIGST---QLVLRHCIREGGKSVPSNKDVTSLDWNNDGT 248 (524)
T ss_pred ccCCCceEEEec---CchhhhhhhccCCccceeeeeehhhccccch---hhhhhhhhhhhcccCCccCCcceEEecCCCC
Confidence 349999998888 88777 9999999999999998641100000 00000011111 1236899999999999
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
.||+|+.||.++||+. +|..+.++..|+++|.++.|+.+| ++|++++.|+++.+||..++....
T Consensus 249 ~LatG~~~G~~riw~~-~G~l~~tl~~HkgPI~slKWnk~G-~yilS~~vD~ttilwd~~~g~~~q-------------- 312 (524)
T KOG0273|consen 249 LLATGSEDGEARIWNK-DGNLISTLGQHKGPIFSLKWNKKG-TYILSGGVDGTTILWDAHTGTVKQ-------------- 312 (524)
T ss_pred eEEEeecCcEEEEEec-CchhhhhhhccCCceEEEEEcCCC-CEEEeccCCccEEEEeccCceEEE--------------
Confidence 9999999999999995 677888999999999999999998 999999999999999998765443
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
.+.-|..+-..+.|-.+.. +++ ++.|+.|+++.+....... .+.+|.+.|.++.
T Consensus 313 -------------~f~~~s~~~lDVdW~~~~~-F~t-s~td~~i~V~kv~~~~P~~-----------t~~GH~g~V~alk 366 (524)
T KOG0273|consen 313 -------------QFEFHSAPALDVDWQSNDE-FAT-SSTDGCIHVCKVGEDRPVK-----------TFIGHHGEVNALK 366 (524)
T ss_pred -------------eeeeccCCccceEEecCce-Eee-cCCCceEEEEEecCCCcce-----------eeecccCceEEEE
Confidence 2233445557788876554 444 3479999999988776655 4677999999999
Q ss_pred eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC---------CEEEEecCCCCEEEEecCCC
Q 010390 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA---------SHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~---------~~l~~g~~dg~i~iw~~~~~ 352 (512)
|+|.+.+|++++.|++++||.... ......+..|. ..+..+.|+|+| ..+++++.|++|++||+..+
T Consensus 367 ~n~tg~LLaS~SdD~TlkiWs~~~--~~~~~~l~~Hs--kei~t~~wsp~g~v~~n~~~~~~l~sas~dstV~lwdv~~g 442 (524)
T KOG0273|consen 367 WNPTGSLLASCSDDGTLKIWSMGQ--SNSVHDLQAHS--KEIYTIKWSPTGPVTSNPNMNLMLASASFDSTVKLWDVESG 442 (524)
T ss_pred ECCCCceEEEecCCCeeEeeecCC--Ccchhhhhhhc--cceeeEeecCCCCccCCCcCCceEEEeecCCeEEEEEccCC
Confidence 999999999999999999999754 33444555554 336678888854 47899999999999999998
Q ss_pred CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 353 QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 353 ~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.+ +..+..|..+|++++|+|++ .++++|+.||.|.+|+..+++..+.
T Consensus 443 v~-i~~f~kH~~pVysvafS~~g-~ylAsGs~dg~V~iws~~~~~l~~s 489 (524)
T KOG0273|consen 443 VP-IHTLMKHQEPVYSVAFSPNG-RYLASGSLDGCVHIWSTKTGKLVKS 489 (524)
T ss_pred ce-eEeeccCCCceEEEEecCCC-cEEEecCCCCeeEeccccchheeEe
Confidence 87 57888999999999999999 8999999999999999999998775
No 30
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.2e-35 Score=270.31 Aligned_cols=287 Identities=25% Similarity=0.432 Sum_probs=240.6
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..+++|.++|.+++| +|++++|++++.||.|++|++.+.. ....+..|...+..+.|+|++++|
T Consensus 3 ~~~~~h~~~i~~~~~---~~~~~~l~~~~~~g~i~i~~~~~~~-------------~~~~~~~~~~~i~~~~~~~~~~~l 66 (289)
T cd00200 3 RTLKGHTGGVTCVAF---SPDGKLLATGSGDGTIKVWDLETGE-------------LLRTLKGHTGPVRDVAASADGTYL 66 (289)
T ss_pred hHhcccCCCEEEEEE---cCCCCEEEEeecCcEEEEEEeeCCC-------------cEEEEecCCcceeEEEECCCCCEE
Confidence 456789999999999 9999999999999999999997653 256677899999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++++.||.|++||+.+++.+..+..|...|.++.|++++ .++++++.|+.|.+||+++.+...
T Consensus 67 ~~~~~~~~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~~~~~~~~~~~~---------------- 129 (289)
T cd00200 67 ASGSSDKTIRLWDLETGECVRTLTGHTSYVSSVAFSPDG-RILSSSSRDKTIKVWDVETGKCLT---------------- 129 (289)
T ss_pred EEEcCCCeEEEEEcCcccceEEEeccCCcEEEEEEcCCC-CEEEEecCCCeEEEEECCCcEEEE----------------
Confidence 999999999999999988888888899999999999986 788888889999999998443221
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
.+..|...+.++.|+|++..+++ ++.++.|++||+++.+... ....+...+.++.|+
T Consensus 130 -----------~~~~~~~~i~~~~~~~~~~~l~~-~~~~~~i~i~d~~~~~~~~-----------~~~~~~~~i~~~~~~ 186 (289)
T cd00200 130 -----------TLRGHTDWVNSVAFSPDGTFVAS-SSQDGTIKLWDLRTGKCVA-----------TLTGHTGEVNSVAFS 186 (289)
T ss_pred -----------EeccCCCcEEEEEEcCcCCEEEE-EcCCCcEEEEEccccccce-----------eEecCccccceEEEC
Confidence 23356778999999999776665 5469999999998766544 344566689999999
Q ss_pred CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD 363 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~ 363 (512)
++++.+++++.++.|++||+... .....+..+ ...+.+++|++++.++++++.||.|++|++.+.+. ...+..|.
T Consensus 187 ~~~~~l~~~~~~~~i~i~d~~~~--~~~~~~~~~--~~~i~~~~~~~~~~~~~~~~~~~~i~i~~~~~~~~-~~~~~~~~ 261 (289)
T cd00200 187 PDGEKLLSSSSDGTIKLWDLSTG--KCLGTLRGH--ENGVNSVAFSPDGYLLASGSEDGTIRVWDLRTGEC-VQTLSGHT 261 (289)
T ss_pred CCcCEEEEecCCCcEEEEECCCC--ceecchhhc--CCceEEEEEcCCCcEEEEEcCCCcEEEEEcCCcee-EEEccccC
Confidence 99999999999999999998653 233333232 23678899999999999998899999999987655 45667899
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
..|.+++|++++ .+|++++.||.|++|+
T Consensus 262 ~~i~~~~~~~~~-~~l~~~~~d~~i~iw~ 289 (289)
T cd00200 262 NSVTSLAWSPDG-KRLASGSADGTIRIWD 289 (289)
T ss_pred CcEEEEEECCCC-CEEEEecCCCeEEecC
Confidence 999999999998 8999999999999996
No 31
>KOG0286 consensus G-protein beta subunit [General function prediction only]
Probab=100.00 E-value=1.5e-35 Score=243.65 Aligned_cols=276 Identities=17% Similarity=0.263 Sum_probs=229.8
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
..+.+++|.+.|+++.|++|.++|++++.||.+.|||.-+...++.+.-....|...+|+|.+ +++++|+.|....||+
T Consensus 47 ~rr~LkGH~~Ki~~~~ws~Dsr~ivSaSqDGklIvWDs~TtnK~haipl~s~WVMtCA~sPSg-~~VAcGGLdN~Csiy~ 125 (343)
T KOG0286|consen 47 TRRTLKGHLNKIYAMDWSTDSRRIVSASQDGKLIVWDSFTTNKVHAIPLPSSWVMTCAYSPSG-NFVACGGLDNKCSIYP 125 (343)
T ss_pred eEEEecccccceeeeEecCCcCeEEeeccCCeEEEEEcccccceeEEecCceeEEEEEECCCC-CeEEecCcCceeEEEe
Confidence 357789999999999999999999999999999999999888888888888899999999998 9999999999999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
+.+..... .....+.+.+|.+.+.|+.|.+|+ .+++ ++-|.+..+||+++++...
T Consensus 126 ls~~d~~g---------------------~~~v~r~l~gHtgylScC~f~dD~-~ilT-~SGD~TCalWDie~g~~~~-- 180 (343)
T KOG0286|consen 126 LSTRDAEG---------------------NVRVSRELAGHTGYLSCCRFLDDN-HILT-GSGDMTCALWDIETGQQTQ-- 180 (343)
T ss_pred cccccccc---------------------cceeeeeecCccceeEEEEEcCCC-ceEe-cCCCceEEEEEcccceEEE--
Confidence 98542211 112233577999999999999855 4554 4459999999999998876
Q ss_pred cCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
.+.+|.+.|.++.++| +++.+++|+.|+..++||++.. ..++.+.+|. ..|..+.|.|+|.-+++|
T Consensus 181 ---------~f~GH~gDV~slsl~p~~~ntFvSg~cD~~aklWD~R~~--~c~qtF~ghe--sDINsv~ffP~G~afatG 247 (343)
T KOG0286|consen 181 ---------VFHGHTGDVMSLSLSPSDGNTFVSGGCDKSAKLWDVRSG--QCVQTFEGHE--SDINSVRFFPSGDAFATG 247 (343)
T ss_pred ---------EecCCcccEEEEecCCCCCCeEEecccccceeeeeccCc--ceeEeecccc--cccceEEEccCCCeeeec
Confidence 5789999999999999 9999999999999999999874 6777888875 558889999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeecc
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPS 416 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 416 (512)
++|++.++||++..+.. ..+.. -..+|++++|+..| ++|++|..|.++.+||.-.++....+. .+..+|.++..
T Consensus 248 SDD~tcRlyDlRaD~~~-a~ys~~~~~~gitSv~FS~SG-RlLfagy~d~~c~vWDtlk~e~vg~L~--GHeNRvScl~~ 323 (343)
T KOG0286|consen 248 SDDATCRLYDLRADQEL-AVYSHDSIICGITSVAFSKSG-RLLFAGYDDFTCNVWDTLKGERVGVLA--GHENRVSCLGV 323 (343)
T ss_pred CCCceeEEEeecCCcEE-eeeccCcccCCceeEEEcccc-cEEEeeecCCceeEeeccccceEEEee--ccCCeeEEEEE
Confidence 99999999999987763 33331 24589999999999 899999999999999998887665432 34444444433
Q ss_pred ch
Q 010390 417 TE 418 (512)
Q Consensus 417 ~~ 418 (512)
.+
T Consensus 324 s~ 325 (343)
T KOG0286|consen 324 SP 325 (343)
T ss_pred CC
Confidence 33
No 32
>KOG0291 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.8e-35 Score=271.38 Aligned_cols=323 Identities=19% Similarity=0.295 Sum_probs=258.2
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
+..++.||-+.|.+|.| +.|.++|++|+.|-.++||+++..+. -....+.+|++.|.++-|..+..
T Consensus 137 l~r~~~g~fddi~si~W---s~DSr~l~~gsrD~s~rl~~v~~~k~-----------~~~~~l~gHkd~VvacfF~~~~~ 202 (893)
T KOG0291|consen 137 LHRTYLGHFDDITSIDW---SDDSRLLVTGSRDLSARLFGVDGNKN-----------LFTYALNGHKDYVVACFFGANSL 202 (893)
T ss_pred EeeeecCCccceeEEEe---ccCCceEEeccccceEEEEEeccccc-----------cceEeccCCCcceEEEEeccCcc
Confidence 33466789999999999 99999999999999999999986543 22567889999999999999999
Q ss_pred EEEEEeCCCcEEEEeCCC-----------------------Cee-----------eecccCcCCCEEEEEeeCCCCCeEE
Q 010390 122 NILTASGDQTIKIWDAEK-----------------------KKC-----------TGALMGHTGSIKSLCSHPTNSDILV 167 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~-----------------------~~~-----------~~~~~~h~~~v~~l~~~~~~~~~l~ 167 (512)
.|++.+.||.+.+|.... ++. ..-+......|++.+|++.- ++|+
T Consensus 203 ~l~tvskdG~l~~W~~~~~P~~~~~~~kd~eg~~d~~~~~~~Eek~~~~~~~k~~k~~ln~~~~kvtaa~fH~~t-~~lv 281 (893)
T KOG0291|consen 203 DLYTVSKDGALFVWTCDLRPPELDKAEKDEEGSDDEEMDEDGEEKTHKIFWYKTKKHYLNQNSSKVTAAAFHKGT-NLLV 281 (893)
T ss_pred eEEEEecCceEEEEEecCCCcccccccccccccccccccccchhhhcceEEEEEEeeeecccccceeeeeccCCc-eEEE
Confidence 999999999999997651 111 01122233689999999966 8999
Q ss_pred EEeCCCcEEEEeCCCCCCCCCcccc-ceeeeccccccccc---------------ccccccceecccccccEEEEEEeec
Q 010390 168 SGSRDGSFAIWDLRCKSSPKSNCAE-SFVFSSAVVKGAHL---------------LSQSKRVSRRKAASMSITSVLYLKD 231 (512)
Q Consensus 168 s~~~dg~i~vwd~~~~~~~~~~~~~-~~~~~~~~~~~~~~---------------~~~~~~~~~~~~~~~~v~~~~~~~~ 231 (512)
+|-..|...+|++..-..+...... ..+..+.+...+.. ......+....+|...+++++++||
T Consensus 282 vgFssG~f~LyelP~f~lih~LSis~~~I~t~~~N~tGDWiA~g~~klgQLlVweWqsEsYVlKQQgH~~~i~~l~YSpD 361 (893)
T KOG0291|consen 282 VGFSSGEFGLYELPDFNLIHSLSISDQKILTVSFNSTGDWIAFGCSKLGQLLVWEWQSESYVLKQQGHSDRITSLAYSPD 361 (893)
T ss_pred EEecCCeeEEEecCCceEEEEeecccceeeEEEecccCCEEEEcCCccceEEEEEeeccceeeeccccccceeeEEECCC
Confidence 9999999999999877665543322 22222222211111 1122334567789999999999999
Q ss_pred CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCce
Q 010390 232 EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPI 311 (512)
Q Consensus 232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~ 311 (512)
|+.+++ |++||+|++||...+-+.. .+..|...|+.+.|+..|+.+++++.||+|+.||+... ...
T Consensus 362 gq~iaT-G~eDgKVKvWn~~SgfC~v-----------TFteHts~Vt~v~f~~~g~~llssSLDGtVRAwDlkRY--rNf 427 (893)
T KOG0291|consen 362 GQLIAT-GAEDGKVKVWNTQSGFCFV-----------TFTEHTSGVTAVQFTARGNVLLSSSLDGTVRAWDLKRY--RNF 427 (893)
T ss_pred CcEEEe-ccCCCcEEEEeccCceEEE-----------EeccCCCceEEEEEEecCCEEEEeecCCeEEeeeeccc--cee
Confidence 999987 6689999999999988877 57889999999999999999999999999999998653 234
Q ss_pred EeeeeceeceeEEEEEECCCCCEEEEecCCC-CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390 312 QHFSGCRIESFYVKSEICPNASHILSGSSDG-NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 312 ~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg-~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 390 (512)
+++.... .....+++..|.|..+++|+.|. .|.+|++++++. +..+.||+++|.+++|+|++ ..|+|+|.|.+|++
T Consensus 428 RTft~P~-p~QfscvavD~sGelV~AG~~d~F~IfvWS~qTGql-lDiLsGHEgPVs~l~f~~~~-~~LaS~SWDkTVRi 504 (893)
T KOG0291|consen 428 RTFTSPE-PIQFSCVAVDPSGELVCAGAQDSFEIFVWSVQTGQL-LDILSGHEGPVSGLSFSPDG-SLLASGSWDKTVRI 504 (893)
T ss_pred eeecCCC-ceeeeEEEEcCCCCEEEeeccceEEEEEEEeecCee-eehhcCCCCcceeeEEcccc-CeEEeccccceEEE
Confidence 4444332 23466789999999999999886 499999999987 57899999999999999999 89999999999999
Q ss_pred EeCCCC
Q 010390 391 WSLENS 396 (512)
Q Consensus 391 wd~~~~ 396 (512)
||+-..
T Consensus 505 W~if~s 510 (893)
T KOG0291|consen 505 WDIFSS 510 (893)
T ss_pred EEeecc
Confidence 998765
No 33
>PLN00181 protein SPA1-RELATED; Provisional
Probab=100.00 E-value=8.7e-35 Score=299.53 Aligned_cols=296 Identities=16% Similarity=0.298 Sum_probs=230.1
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNIL 124 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~ 124 (512)
+.+|.+.|.+++| +|+|++||+|+.|+.|+|||......... ....+...+. +...|.+++|++ ++.+|+
T Consensus 479 ~~~~~~~V~~i~f---s~dg~~latgg~D~~I~iwd~~~~~~~~~-----~~~~~~~~~~-~~~~v~~l~~~~~~~~~la 549 (793)
T PLN00181 479 LLNSSNLVCAIGF---DRDGEFFATAGVNKKIKIFECESIIKDGR-----DIHYPVVELA-SRSKLSGICWNSYIKSQVA 549 (793)
T ss_pred ccCCCCcEEEEEE---CCCCCEEEEEeCCCEEEEEECCccccccc-----ccccceEEec-ccCceeeEEeccCCCCEEE
Confidence 4558999999999 99999999999999999999764211000 0001122233 356899999988 578999
Q ss_pred EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+++.||+|+|||+.+++.+..+.+|.+.|++++|+|.++.+|++|+.||.|++||++++....
T Consensus 550 s~~~Dg~v~lWd~~~~~~~~~~~~H~~~V~~l~~~p~~~~~L~Sgs~Dg~v~iWd~~~~~~~~----------------- 612 (793)
T PLN00181 550 SSNFEGVVQVWDVARSQLVTEMKEHEKRVWSIDYSSADPTLLASGSDDGSVKLWSINQGVSIG----------------- 612 (793)
T ss_pred EEeCCCeEEEEECCCCeEEEEecCCCCCEEEEEEcCCCCCEEEEEcCCCEEEEEECCCCcEEE-----------------
Confidence 999999999999999999999999999999999998555899999999999999998654322
Q ss_pred ccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
.+. +...+.++.|++ ++..+++ |+.||.|++||+++...... ...+|...|.++.|.
T Consensus 613 ----------~~~-~~~~v~~v~~~~~~g~~lat-gs~dg~I~iwD~~~~~~~~~----------~~~~h~~~V~~v~f~ 670 (793)
T PLN00181 613 ----------TIK-TKANICCVQFPSESGRSLAF-GSADHKVYYYDLRNPKLPLC----------TMIGHSKTVSYVRFV 670 (793)
T ss_pred ----------EEe-cCCCeEEEEEeCCCCCEEEE-EeCCCeEEEEECCCCCccce----------EecCCCCCEEEEEEe
Confidence 111 234688999965 4666655 66899999999987653221 356777889999997
Q ss_pred CCCCEEEEEecCCeEEEEEcccCC----CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC---
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLD----KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP--- 356 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~----~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~--- 356 (512)
++.+|++++.|+.|++||+.... ...+..+.+|. ..+..++|++++++|++|+.|+.|++|+........
T Consensus 671 -~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~--~~i~~v~~s~~~~~lasgs~D~~v~iw~~~~~~~~~s~~ 747 (793)
T PLN00181 671 -DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHT--NVKNFVGLSVSDGYIATGSETNEVFVYHKAFPMPVLSYK 747 (793)
T ss_pred -CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCC--CCeeEEEEcCCCCEEEEEeCCCEEEEEECCCCCceEEEe
Confidence 77899999999999999986432 23455666653 446678999999999999999999999976543210
Q ss_pred ---------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 357 ---------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 357 ---------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
.....|...|.+++|+|++ ..|++|+.||.|+||++
T Consensus 748 ~~~~~~~~~~~~~~~~~~V~~v~ws~~~-~~lva~~~dG~I~i~~~ 792 (793)
T PLN00181 748 FKTIDPVSGLEVDDASQFISSVCWRGQS-STLVAANSTGNIKILEM 792 (793)
T ss_pred cccCCcccccccCCCCcEEEEEEEcCCC-CeEEEecCCCcEEEEec
Confidence 0123456679999999999 89999999999999997
No 34
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=3.4e-36 Score=242.63 Aligned_cols=284 Identities=21% Similarity=0.389 Sum_probs=225.1
Q ss_pred ccceeeecCcccccccccCCCCC-------CceeeeeeEeecC------------CccCCcceEEEEEecCCC-cEEEEe
Q 010390 12 NVRSRELNGFKARKRPYFGDVVT-------DFTEIGAVTVEHH------------GEETPPLAVSFCKTSKNS-HIFAVS 71 (512)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~------------gh~~~v~~v~~~~~s~~~-~~latg 71 (512)
..+..+++||+++++||...-++ +....|.+++.-. .-.+.++.|+| +++. +.++++
T Consensus 3 ~~~tpgf~GysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~W---se~~e~~~~~a 79 (311)
T KOG0277|consen 3 THTTPGFHGYSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAW---SENHENQVIAA 79 (311)
T ss_pred ceecCCcccceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeee---cCCCcceEEEE
Confidence 45677899999999999887553 2333344443322 13556778888 5543 578888
Q ss_pred eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeeeecccCcC
Q 010390 72 DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKCTGALMGHT 150 (512)
Q Consensus 72 ~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~ 150 (512)
+.||+++|||.... ..++..++.|+.+|.++.|++ +++.+++++.|++|++|+...++.+.++.+|.
T Consensus 80 ~GDGSLrl~d~~~~------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~Tf~gh~ 147 (311)
T KOG0277|consen 80 SGDGSLRLFDLTMP------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQTFNGHN 147 (311)
T ss_pred ecCceEEEeccCCC------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceEeecCCc
Confidence 89999999995322 346889999999999999999 66778888999999999999999999999999
Q ss_pred CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390 151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230 (512)
Q Consensus 151 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (512)
..|....|+|..++++++++.|+++++||++...... .+..|..++.++.|+.
T Consensus 148 ~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk~~---------------------------~i~ah~~Eil~cdw~k 200 (311)
T KOG0277|consen 148 SCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGKFM---------------------------SIEAHNSEILCCDWSK 200 (311)
T ss_pred cEEEEEecCCCCCCeEEEccCCceEEEEEecCCCcee---------------------------EEEeccceeEeecccc
Confidence 9999999999999999999999999999998543221 2567888999999999
Q ss_pred cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc
Q 010390 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP 310 (512)
Q Consensus 231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 310 (512)
-...++++|+.|+.|+.||+++.+.... ++.+|.-.
T Consensus 201 y~~~vl~Tg~vd~~vr~wDir~~r~pl~----------eL~gh~~A---------------------------------- 236 (311)
T KOG0277|consen 201 YNHNVLATGGVDNLVRGWDIRNLRTPLF----------ELNGHGLA---------------------------------- 236 (311)
T ss_pred cCCcEEEecCCCceEEEEehhhccccce----------eecCCceE----------------------------------
Confidence 8888888888999999999987653321 22222222
Q ss_pred eEeeeeceeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390 311 IQHFSGCRIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR 389 (512)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 389 (512)
+.+++|||. ...|++++.|-+++|||.......+.+...|..-|..+.|++..+.++|+++.|+.++
T Consensus 237 ------------VRkvk~Sph~~~lLaSasYDmT~riw~~~~~ds~~e~~~~HtEFv~g~Dws~~~~~~vAs~gWDe~l~ 304 (311)
T KOG0277|consen 237 ------------VRKVKFSPHHASLLASASYDMTVRIWDPERQDSAIETVDHHTEFVCGLDWSLFDPGQVASTGWDELLY 304 (311)
T ss_pred ------------EEEEecCcchhhHhhhccccceEEecccccchhhhhhhhccceEEeccccccccCceeeeccccccee
Confidence 444566665 3567888888888888887666556677789999999999998889999999999999
Q ss_pred EEeC
Q 010390 390 LWSL 393 (512)
Q Consensus 390 vwd~ 393 (512)
||+.
T Consensus 305 Vw~p 308 (311)
T KOG0277|consen 305 VWNP 308 (311)
T ss_pred eecc
Confidence 9984
No 35
>KOG0284 consensus Polyadenylation factor I complex, subunit PFS2 [RNA processing and modification]
Probab=100.00 E-value=2.9e-36 Score=258.76 Aligned_cols=278 Identities=15% Similarity=0.290 Sum_probs=235.5
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
-+..|..+.|.|+|+.|++|+..|.+.+|+..+-.....++.|..+|.++.|++++ .++++|+.+|.|++|+..-....
T Consensus 95 vkc~V~~v~WtPeGRRLltgs~SGEFtLWNg~~fnFEtilQaHDs~Vr~m~ws~~g-~wmiSgD~gG~iKyWqpnmnnVk 173 (464)
T KOG0284|consen 95 VKCPVNVVRWTPEGRRLLTGSQSGEFTLWNGTSFNFETILQAHDSPVRTMKWSHNG-TWMISGDKGGMIKYWQPNMNNVK 173 (464)
T ss_pred cccceeeEEEcCCCceeEeecccccEEEecCceeeHHHHhhhhcccceeEEEccCC-CEEEEcCCCceEEecccchhhhH
Confidence 35689999999999999999999999999986666666678999999999999988 99999999999999998744322
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
. ....|...|++++|+|+...+++++ +||.|+|||....+...
T Consensus 174 ~---------------------------~~ahh~eaIRdlafSpnDskF~t~S-dDg~ikiWdf~~~kee~--------- 216 (464)
T KOG0284|consen 174 I---------------------------IQAHHAEAIRDLAFSPNDSKFLTCS-DDGTIKIWDFRMPKEER--------- 216 (464)
T ss_pred H---------------------------hhHhhhhhhheeccCCCCceeEEec-CCCeEEEEeccCCchhh---------
Confidence 1 1123448999999999888888755 89999999999877654
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
.+.+|.-.|.+++|+|...++++++.|+.|++||.+++ ..+.++..|+ ..|+.+.|++++++|++++.|..+++
T Consensus 217 --vL~GHgwdVksvdWHP~kgLiasgskDnlVKlWDprSg--~cl~tlh~HK--ntVl~~~f~~n~N~Llt~skD~~~kv 290 (464)
T KOG0284|consen 217 --VLRGHGWDVKSVDWHPTKGLIASGSKDNLVKLWDPRSG--SCLATLHGHK--NTVLAVKFNPNGNWLLTGSKDQSCKV 290 (464)
T ss_pred --eeccCCCCcceeccCCccceeEEccCCceeEeecCCCc--chhhhhhhcc--ceEEEEEEcCCCCeeEEccCCceEEE
Confidence 46888899999999999999999999999999998774 3455555554 56889999999999999999999999
Q ss_pred EecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCC
Q 010390 347 WQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNG 426 (512)
Q Consensus 347 w~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 426 (512)
+|+++.+. +..+++|+..|+++.|+|-.+.+|.+|+.||.|..|.+...+.+... +..+...||++...+.+.+++.+
T Consensus 291 ~DiR~mkE-l~~~r~Hkkdv~~~~WhP~~~~lftsgg~Dgsvvh~~v~~~~p~~~i-~~AHd~~iwsl~~hPlGhil~tg 368 (464)
T KOG0284|consen 291 FDIRTMKE-LFTYRGHKKDVTSLTWHPLNESLFTSGGSDGSVVHWVVGLEEPLGEI-PPAHDGEIWSLAYHPLGHILATG 368 (464)
T ss_pred EehhHhHH-HHHhhcchhhheeeccccccccceeeccCCCceEEEeccccccccCC-CcccccceeeeeccccceeEeec
Confidence 99996555 57899999999999999988899999999999999999854444432 44567789999999999999887
Q ss_pred CCcc
Q 010390 427 EPGW 430 (512)
Q Consensus 427 ~~~~ 430 (512)
+...
T Consensus 369 snd~ 372 (464)
T KOG0284|consen 369 SNDR 372 (464)
T ss_pred CCCc
Confidence 6654
No 36
>KOG0295 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.7e-36 Score=253.35 Aligned_cols=297 Identities=19% Similarity=0.260 Sum_probs=242.1
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
-+.-++.|...+..+..+.--.. ..+...+.+|...|+.+-|+|+-..+++++.|++|++||..++++.
T Consensus 75 ~~~el~~g~pt~~~~~~~~wipR-----------p~l~~~l~g~r~~vt~v~~hp~~~~v~~as~d~tikv~D~~tg~~e 143 (406)
T KOG0295|consen 75 TGDELIAGDPTGSKRTPALWIPR-----------PNLVQKLAGHRSSVTRVIFHPSEALVVSASEDATIKVFDTETGELE 143 (406)
T ss_pred cccccccCCCCcCccChhhcCCC-----------CCchhhhhccccceeeeeeccCceEEEEecCCceEEEEEccchhhh
Confidence 34456666555555544432111 2446677889999999999999999999999999999999999999
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
..+++|...|..|+|+..| .++++++.|-.+++||..+. ........+|+..|
T Consensus 144 ~~LrGHt~sv~di~~~a~G-k~l~tcSsDl~~~LWd~~~~--------------------------~~c~ks~~gh~h~v 196 (406)
T KOG0295|consen 144 RSLRGHTDSVFDISFDASG-KYLATCSSDLSAKLWDFDTF--------------------------FRCIKSLIGHEHGV 196 (406)
T ss_pred hhhhccccceeEEEEecCc-cEEEecCCccchhheeHHHH--------------------------HHHHHHhcCcccce
Confidence 9999999999999999988 99999999988999998742 22334566888899
Q ss_pred EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEc
Q 010390 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNV 303 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~ 303 (512)
.+++|-|.|.++++++ .|.+|+.|++.++-++. .+.+|...|..++.+.||.++++++.|.++++|-+
T Consensus 197 S~V~f~P~gd~ilS~s-rD~tik~We~~tg~cv~-----------t~~~h~ewvr~v~v~~DGti~As~s~dqtl~vW~~ 264 (406)
T KOG0295|consen 197 SSVFFLPLGDHILSCS-RDNTIKAWECDTGYCVK-----------TFPGHSEWVRMVRVNQDGTIIASCSNDQTLRVWVV 264 (406)
T ss_pred eeEEEEecCCeeeecc-cccceeEEecccceeEE-----------eccCchHhEEEEEecCCeeEEEecCCCceEEEEEe
Confidence 9999999999999865 89999999999999887 47778889999999999999999999999999998
Q ss_pred ccCCCCceEeeeeceeceeEEEEEECC---------------CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390 304 LQLDKGPIQHFSGCRIESFYVKSEICP---------------NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA 368 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~---------------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 368 (512)
.+.+.........+ .+-+++|.| .++++++++.|++|++||+.++.+ +.++.+|...|..
T Consensus 265 ~t~~~k~~lR~hEh----~vEci~wap~~~~~~i~~at~~~~~~~~l~s~SrDktIk~wdv~tg~c-L~tL~ghdnwVr~ 339 (406)
T KOG0295|consen 265 ATKQCKAELREHEH----PVECIAWAPESSYPSISEATGSTNGGQVLGSGSRDKTIKIWDVSTGMC-LFTLVGHDNWVRG 339 (406)
T ss_pred ccchhhhhhhcccc----ceEEEEecccccCcchhhccCCCCCccEEEeecccceEEEEeccCCeE-EEEEecccceeee
Confidence 76543333332222 344566654 136899999999999999999987 5789999999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccch
Q 010390 369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTE 418 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 418 (512)
++|+|.| ++|+|+.+|+++++||+.+++|..+..+.. .-+.++++..
T Consensus 340 ~af~p~G-kyi~ScaDDktlrvwdl~~~~cmk~~~ah~--hfvt~lDfh~ 386 (406)
T KOG0295|consen 340 VAFSPGG-KYILSCADDKTLRVWDLKNLQCMKTLEAHE--HFVTSLDFHK 386 (406)
T ss_pred eEEcCCC-eEEEEEecCCcEEEEEeccceeeeccCCCc--ceeEEEecCC
Confidence 9999999 999999999999999999999999876433 3344444444
No 37
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=7.6e-35 Score=268.37 Aligned_cols=390 Identities=17% Similarity=0.259 Sum_probs=290.6
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.+.+.+.||...|+.+.| ...|..||+|+.|+.|.+||+-... -...+.+|++.|+..-|..+.
T Consensus 98 ~~~~tfngHK~AVt~l~f---d~~G~rlaSGskDt~IIvwDlV~E~-------------Gl~rL~GHkd~iT~~~F~~~~ 161 (888)
T KOG0306|consen 98 EILITFNGHKAAVTTLKF---DKIGTRLASGSKDTDIIVWDLVGEE-------------GLFRLRGHKDSITQALFLNGD 161 (888)
T ss_pred ceeeeecccccceEEEEE---cccCceEeecCCCccEEEEEeccce-------------eeEEeecchHHHhHHhccCCC
Confidence 667788999999999999 9999999999999999999986542 377899999999999999888
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC-------------
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK------------- 187 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~------------- 187 (512)
++|++.+.|+.|++||+++..|..+...|.+.|+++++.+ +.+++++.|+.+++|++.......
T Consensus 162 ~~lvS~sKDs~iK~WdL~tqhCf~Thvd~r~Eiw~l~~~~---~~lvt~~~dse~~v~~L~~~~D~~~~~~~~s~~~~G~ 238 (888)
T KOG0306|consen 162 SFLVSVSKDSMIKFWDLETQHCFETHVDHRGEIWALVLDE---KLLVTAGTDSELKVWELAFEDDEKETNRYISTKLRGT 238 (888)
T ss_pred eEEEEeccCceEEEEecccceeeeEEecccceEEEEEEec---ceEEEEecCCceEEEEeecccccccccccceeeccce
Confidence 9999999999999999999999999999999999999986 689999999999999982110000
Q ss_pred -------------Cccccce------------------------------------------------------------
Q 010390 188 -------------SNCAESF------------------------------------------------------------ 194 (512)
Q Consensus 188 -------------~~~~~~~------------------------------------------------------------ 194 (512)
......+
T Consensus 239 ~~rqsk~R~i~l~~d~s~r~~~c~g~d~~~e~frI~s~~E~~k~l~Kk~k~~Kkka~t~e~~~~v~~sl~~~i~r~~~ir 318 (888)
T KOG0306|consen 239 FIRQSKGREINLVTDFSDRFLVCQGADKVIELFRIRSKEEIAKILSKKLKRAKKKAETEENEDDVEKSLSDEIKRLETIR 318 (888)
T ss_pred eeeccCCceeEEeecCcccEEEEecchhhhhheeecCHHHHHHHHHHHHHHhhhhccccccccchhhhHHHHHHHHHhee
Confidence 0000000
Q ss_pred ----eeecccccccccc-----------------c--------ccccceecccccccEEEEEEeecCCEEEEEeecCCeE
Q 010390 195 ----VFSSAVVKGAHLL-----------------S--------QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV 245 (512)
Q Consensus 195 ----~~~~~~~~~~~~~-----------------~--------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i 245 (512)
+.+....++.+.. . .........+|...|.+++++.+...+++ | .++.+
T Consensus 319 ~~~kiks~dv~~~~~~~~~lv~l~nNtv~~ysl~~s~~~~p~~~~~~~i~~~GHR~dVRsl~vS~d~~~~~S-g-a~~Si 396 (888)
T KOG0306|consen 319 TSAKIKSFDVTPSGGTENTLVLLANNTVEWYSLENSGKTSPEADRTSNIEIGGHRSDVRSLCVSSDSILLAS-G-AGESI 396 (888)
T ss_pred chhheeEEEEEecCCcceeEEEeecCceEEEEeccCCCCCccccccceeeeccchhheeEEEeecCceeeee-c-CCCcE
Confidence 0000000000000 0 00001245678899999999988877765 4 47899
Q ss_pred EEEeccCccceecccCCCc-----------------------------cccccccccccCeeEEEeCCCCCEEEEEecCC
Q 010390 246 KFWDTRNLKAQITQAWPHA-----------------------------ESSSAKETRLHGISSLSQDSNGVFLTASCMDH 296 (512)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~-----------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg 296 (512)
++|+..+.+++.+...... ........|.+.|.+++.+||+..+++|+.|.
T Consensus 397 kiWn~~t~kciRTi~~~y~l~~~Fvpgd~~Iv~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~~g~vT~saDk 476 (888)
T KOG0306|consen 397 KIWNRDTLKCIRTITCGYILASKFVPGDRYIVLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDNKGFVTGSADK 476 (888)
T ss_pred EEEEccCcceeEEeccccEEEEEecCCCceEEEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCCCceEEecCCc
Confidence 9999998887766533211 11124568899999999999999999999999
Q ss_pred eEEEEEcccCCC-----CceEee---eeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390 297 RIYLYNVLQLDK-----GPIQHF---SGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA 368 (512)
Q Consensus 297 ~i~i~d~~~~~~-----~~~~~~---~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 368 (512)
+|++||..-... ..+..+ ..-..+..+.++.+||||++||++--|++++||-+++-+. ...+.||.-+|.|
T Consensus 477 tVkfWdf~l~~~~~gt~~k~lsl~~~rtLel~ddvL~v~~Spdgk~LaVsLLdnTVkVyflDtlKF-flsLYGHkLPV~s 555 (888)
T KOG0306|consen 477 TVKFWDFKLVVSVPGTQKKVLSLKHTRTLELEDDVLCVSVSPDGKLLAVSLLDNTVKVYFLDTLKF-FLSLYGHKLPVLS 555 (888)
T ss_pred EEEEEeEEEEeccCcccceeeeeccceEEeccccEEEEEEcCCCcEEEEEeccCeEEEEEecceee-eeeecccccceeE
Confidence 999999743221 111111 1223456688999999999999999999999999998776 4578899999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccC-C-------------------CC
Q 010390 369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMN-G-------------------EP 428 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~-------------------~~ 428 (512)
+..+||+ .+++|||.|.+|+||-++=|.|-+.+-. +...++++.+-|...+++. | ++
T Consensus 556 mDIS~DS-klivTgSADKnVKiWGLdFGDCHKS~fA--HdDSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~iq~L~~ 632 (888)
T KOG0306|consen 556 MDISPDS-KLIVTGSADKNVKIWGLDFGDCHKSFFA--HDDSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEEIQKLDG 632 (888)
T ss_pred EeccCCc-CeEEeccCCCceEEeccccchhhhhhhc--ccCceeEEEEcccceeEEEecCcceEEeechhhhhhheeecc
Confidence 9999999 9999999999999999999999876432 3344555555554444432 2 22
Q ss_pred cccccCCCCcCCCchhcccCCCC-CCCCC
Q 010390 429 GWLAKGSDRSYNSDDVLNQINSS-DPKNM 456 (512)
Q Consensus 429 ~~~~~~~~~~~~p~~~~~~~~~~-~~~~~ 456 (512)
+...+- .++..|+|.++..++. ...++
T Consensus 633 H~~ev~-cLav~~~G~~vvs~shD~sIRl 660 (888)
T KOG0306|consen 633 HHSEVW-CLAVSPNGSFVVSSSHDKSIRL 660 (888)
T ss_pred chheee-eeEEcCCCCeEEeccCCceeEe
Confidence 333333 7888999999988866 33443
No 38
>KOG0263 consensus Transcription initiation factor TFIID, subunit TAF5 (also component of histone acetyltransferase SAGA) [Transcription]
Probab=100.00 E-value=7.4e-36 Score=277.49 Aligned_cols=253 Identities=19% Similarity=0.341 Sum_probs=219.7
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------------------------------eeecccCc
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-------------------------------CTGALMGH 149 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------------------------------~~~~~~~h 149 (512)
..++......++|..|++|+.+||.|-.|..|++|.+...+ ...++.+|
T Consensus 371 ~YT~~nt~~~v~ca~fSddssmlA~Gf~dS~i~~~Sl~p~kl~~lk~~~~l~~~d~~sad~~~~~~D~~~~~~~~~L~GH 450 (707)
T KOG0263|consen 371 MYTFHNTYQGVTCAEFSDDSSMLACGFVDSSVRVWSLTPKKLKKLKDASDLSNIDTESADVDVDMLDDDSSGTSRTLYGH 450 (707)
T ss_pred EEEEEEcCCcceeEeecCCcchhhccccccEEEEEecchhhhccccchhhhccccccccchhhhhccccCCceeEEeecC
Confidence 34444455789999999999999999999999999987321 22456789
Q ss_pred CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390 150 TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL 229 (512)
Q Consensus 150 ~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 229 (512)
.++|....|+|+. ++|++++.|+++|+|.+.+..... ...+|..+|+.+.|+
T Consensus 451 ~GPVyg~sFsPd~-rfLlScSED~svRLWsl~t~s~~V---------------------------~y~GH~~PVwdV~F~ 502 (707)
T KOG0263|consen 451 SGPVYGCSFSPDR-RFLLSCSEDSSVRLWSLDTWSCLV---------------------------IYKGHLAPVWDVQFA 502 (707)
T ss_pred CCceeeeeecccc-cceeeccCCcceeeeecccceeEE---------------------------EecCCCcceeeEEec
Confidence 9999999999998 999999999999999998765433 556899999999999
Q ss_pred ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC
Q 010390 230 KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG 309 (512)
Q Consensus 230 ~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 309 (512)
|.|-+++++ +.|++-++|......... .+.+|...|.|+.|+|+..++++|+.|.++++||+.++.
T Consensus 503 P~GyYFata-s~D~tArLWs~d~~~PlR-----------ifaghlsDV~cv~FHPNs~Y~aTGSsD~tVRlWDv~~G~-- 568 (707)
T KOG0263|consen 503 PRGYYFATA-SHDQTARLWSTDHNKPLR-----------IFAGHLSDVDCVSFHPNSNYVATGSSDRTVRLWDVSTGN-- 568 (707)
T ss_pred CCceEEEec-CCCceeeeeecccCCchh-----------hhcccccccceEEECCcccccccCCCCceEEEEEcCCCc--
Confidence 999999986 579999999998865544 578899999999999999999999999999999998744
Q ss_pred ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEE
Q 010390 310 PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVR 389 (512)
Q Consensus 310 ~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~ 389 (512)
.++.+.+|. ..+.+++|||+|++|++|+.||.|.+||+.++.. +..+.+|++.|.++.|+.+| ..||+||.|.+|+
T Consensus 569 ~VRiF~GH~--~~V~al~~Sp~Gr~LaSg~ed~~I~iWDl~~~~~-v~~l~~Ht~ti~SlsFS~dg-~vLasgg~DnsV~ 644 (707)
T KOG0263|consen 569 SVRIFTGHK--GPVTALAFSPCGRYLASGDEDGLIKIWDLANGSL-VKQLKGHTGTIYSLSFSRDG-NVLASGGADNSVR 644 (707)
T ss_pred EEEEecCCC--CceEEEEEcCCCceEeecccCCcEEEEEcCCCcc-hhhhhcccCceeEEEEecCC-CEEEecCCCCeEE
Confidence 577777764 6789999999999999999999999999999877 57888999999999999999 8999999999999
Q ss_pred EEeCCCCccc
Q 010390 390 LWSLENSRCS 399 (512)
Q Consensus 390 vwd~~~~~~~ 399 (512)
+||+..-...
T Consensus 645 lWD~~~~~~~ 654 (707)
T KOG0263|consen 645 LWDLTKVIEL 654 (707)
T ss_pred EEEchhhccc
Confidence 9998765443
No 39
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=100.00 E-value=8.1e-35 Score=247.73 Aligned_cols=307 Identities=19% Similarity=0.318 Sum_probs=239.8
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC---EEE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT---NIL 124 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~---~l~ 124 (512)
-|.+.|.+|.- . +++|++|++||.++|||.... ...++.+|.++|.+++|.-... .++
T Consensus 103 ~hdDWVSsv~~---~--~~~IltgsYDg~~riWd~~Gk--------------~~~~~~Ght~~ik~v~~v~~n~~~~~fv 163 (423)
T KOG0313|consen 103 LHDDWVSSVKG---A--SKWILTGSYDGTSRIWDLKGK--------------SIKTIVGHTGPIKSVAWVIKNSSSCLFV 163 (423)
T ss_pred cchhhhhhhcc---c--CceEEEeecCCeeEEEecCCc--------------eEEEEecCCcceeeeEEEecCCccceEE
Confidence 48889999988 4 789999999999999998654 3677889999999999876444 499
Q ss_pred EEeCCCcEEEEeCCCCee----eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 125 TASGDQTIKIWDAEKKKC----TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
+++.|.++++|.++.++. +..-+||...|.+++..+++ ..+++|+.|.+|.+|+.............. .....
T Consensus 164 sas~Dqtl~Lw~~~~~~~~~~~~~~~~GHk~~V~sVsv~~sg-tr~~SgS~D~~lkiWs~~~~~~~~~E~~s~--~rrk~ 240 (423)
T KOG0313|consen 164 SASMDQTLRLWKWNVGENKVKALKVCRGHKRSVDSVSVDSSG-TRFCSGSWDTMLKIWSVETDEEDELESSSN--RRRKK 240 (423)
T ss_pred EecCCceEEEEEecCchhhhhHHhHhcccccceeEEEecCCC-CeEEeecccceeeecccCCCccccccccch--hhhhh
Confidence 999999999999987753 33445999999999999988 999999999999999943222111000000 00000
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
............+..+.+|..+|.++.|.+ . ..+.+++.|.+|+.||+.++....... ....++++
T Consensus 241 ~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~-~v~yS~SwDHTIk~WDletg~~~~~~~------------~~ksl~~i 306 (423)
T KOG0313|consen 241 QKREKEGGTRTPLVTLEGHTEPVSSVVWSD-A-TVIYSVSWDHTIKVWDLETGGLKSTLT------------TNKSLNCI 306 (423)
T ss_pred hhhhhcccccCceEEecccccceeeEEEcC-C-CceEeecccceEEEEEeecccceeeee------------cCcceeEe
Confidence 000111122344557889999999999998 3 344456699999999999988775432 23458999
Q ss_pred EeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCCce
Q 010390 281 SQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
..+|...+|++|+.|..|++||.+..... ....+.+|. .++..+.|+|... .|++|+.|+++++||+++.+.+++.
T Consensus 307 ~~~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~--nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd 384 (423)
T KOG0313|consen 307 SYSPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHK--NWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD 384 (423)
T ss_pred ecccccceeeecCCCCceeecCCCCCCCceeEEeeecch--hhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee
Confidence 99999999999999999999999887543 344555664 5888999999765 5689999999999999999978899
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+.+|.+.|.++.|... .++++||.|++|+|+.-.
T Consensus 385 I~~h~DKvl~vdW~~~--~~IvSGGaD~~l~i~~~~ 418 (423)
T KOG0313|consen 385 IAGHNDKVLSVDWNEG--GLIVSGGADNKLRIFKGS 418 (423)
T ss_pred eccCCceEEEEeccCC--ceEEeccCcceEEEeccc
Confidence 9999999999999875 499999999999998654
No 40
>KOG0319 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=6.1e-35 Score=268.68 Aligned_cols=308 Identities=19% Similarity=0.291 Sum_probs=261.3
Q ss_pred eeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390 38 EIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI 117 (512)
Q Consensus 38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 117 (512)
....+...+.|..+.|..++|. .|+.++||+++..+.+++|+..+... ..+.+|++.|.++...
T Consensus 311 ~~l~i~k~ivG~ndEI~Dm~~l--G~e~~~laVATNs~~lr~y~~~~~~c--------------~ii~GH~e~vlSL~~~ 374 (775)
T KOG0319|consen 311 DELTIVKQIVGYNDEILDMKFL--GPEESHLAVATNSPELRLYTLPTSYC--------------QIIPGHTEAVLSLDVW 374 (775)
T ss_pred cccEEehhhcCCchhheeeeec--CCccceEEEEeCCCceEEEecCCCce--------------EEEeCchhheeeeeec
Confidence 3445666788999999999996 88899999999999999998876542 3578999999999965
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 118 KEDTNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 118 ~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
.+|.+|+||+.|.++++|.++++ .++....+|...|.+++++..+..+|++++.|+++++|++...+....
T Consensus 375 ~~g~llat~sKD~svilWr~~~~~~~~~~~a~~~gH~~svgava~~~~~asffvsvS~D~tlK~W~l~~s~~~~~----- 449 (775)
T KOG0319|consen 375 SSGDLLATGSKDKSVILWRLNNNCSKSLCVAQANGHTNSVGAVAGSKLGASFFVSVSQDCTLKLWDLPKSKETAF----- 449 (775)
T ss_pred ccCcEEEEecCCceEEEEEecCCcchhhhhhhhcccccccceeeecccCccEEEEecCCceEEEecCCCcccccc-----
Confidence 67889999999999999988544 345667899999999999988889999999999999999986322111
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
............|+..|++++++|+.+.+++ |+.|.+.++|++....... .+.+|
T Consensus 450 -------------~~~~~~~~t~~aHdKdIN~Vaia~ndkLiAT-~SqDktaKiW~le~~~l~~-----------vLsGH 504 (775)
T KOG0319|consen 450 -------------PIVLTCRYTERAHDKDINCVAIAPNDKLIAT-GSQDKTAKIWDLEQLRLLG-----------VLSGH 504 (775)
T ss_pred -------------cceehhhHHHHhhcccccceEecCCCceEEe-cccccceeeecccCceEEE-----------EeeCC
Confidence 0011112245689999999999999988887 6699999999999666554 58999
Q ss_pred ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
..+|.++.|++..+.+++++.|++|+||.+.+ ...+.++.+|. +.+..+.|-.+|..|++++.||-|++|++.+..
T Consensus 505 ~RGvw~V~Fs~~dq~laT~SgD~TvKIW~is~--fSClkT~eGH~--~aVlra~F~~~~~qliS~~adGliKlWnikt~e 580 (775)
T KOG0319|consen 505 TRGVWCVSFSKNDQLLATCSGDKTVKIWSIST--FSCLKTFEGHT--SAVLRASFIRNGKQLISAGADGLIKLWNIKTNE 580 (775)
T ss_pred ccceEEEEeccccceeEeccCCceEEEEEecc--ceeeeeecCcc--ceeEeeeeeeCCcEEEeccCCCcEEEEeccchh
Confidence 99999999999999999999999999999976 45778888885 558889999999999999999999999999988
Q ss_pred CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 354 ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 354 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+ ...+.+|++.|++++.++.. ..++||+.||.|.+|.=.+.+
T Consensus 581 C-~~tlD~H~DrvWaL~~~~~~-~~~~tgg~Dg~i~~wkD~Te~ 622 (775)
T KOG0319|consen 581 C-EMTLDAHNDRVWALSVSPLL-DMFVTGGGDGRIIFWKDVTEE 622 (775)
T ss_pred h-hhhhhhccceeEEEeecCcc-ceeEecCCCeEEEEeecCcHH
Confidence 7 57899999999999999999 799999999999999765543
No 41
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=100.00 E-value=4.5e-34 Score=232.03 Aligned_cols=297 Identities=18% Similarity=0.272 Sum_probs=238.9
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
+.++||+.|++-|.| +.+|++|.+++.|..+.||-..+++ .+.++.+|.+.|+++....+.++|
T Consensus 4 i~l~GHERplTqiKy---N~eGDLlFscaKD~~~~vw~s~nGe-------------rlGty~GHtGavW~~Did~~s~~l 67 (327)
T KOG0643|consen 4 ILLQGHERPLTQIKY---NREGDLLFSCAKDSTPTVWYSLNGE-------------RLGTYDGHTGAVWCCDIDWDSKHL 67 (327)
T ss_pred cccccCccccceEEe---cCCCcEEEEecCCCCceEEEecCCc-------------eeeeecCCCceEEEEEecCCccee
Confidence 467899999999999 9999999999999999999875553 388999999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-----CCcEEEEeCCCCCCCCCccccceeeec
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-----DGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
++|+.|.++++||+++|+++..+. -..+|..+.|++.+ ++++.+.. .+.|.++|++.......
T Consensus 68 iTGSAD~t~kLWDv~tGk~la~~k-~~~~Vk~~~F~~~g-n~~l~~tD~~mg~~~~v~~fdi~~~~~~~~---------- 135 (327)
T KOG0643|consen 68 ITGSADQTAKLWDVETGKQLATWK-TNSPVKRVDFSFGG-NLILASTDKQMGYTCFVSVFDIRDDSSDID---------- 135 (327)
T ss_pred eeccccceeEEEEcCCCcEEEEee-cCCeeEEEeeccCC-cEEEEEehhhcCcceEEEEEEccCChhhhc----------
Confidence 999999999999999999999988 45689999999988 66655543 36799999985442111
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
...+......+...++.+.|.|-++.+++ |.+||.|.+||++++..... ....|...|+
T Consensus 136 ----------s~ep~~kI~t~~skit~a~Wg~l~~~ii~-Ghe~G~is~~da~~g~~~v~----------s~~~h~~~In 194 (327)
T KOG0643|consen 136 ----------SEEPYLKIPTPDSKITSALWGPLGETIIA-GHEDGSISIYDARTGKELVD----------SDEEHSSKIN 194 (327)
T ss_pred ----------ccCceEEecCCccceeeeeecccCCEEEE-ecCCCcEEEEEcccCceeee----------chhhhccccc
Confidence 12223355567789999999999999998 66899999999999876654 4567778999
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe--cCCCC---
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ--VNKPQ--- 353 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~--~~~~~--- 353 (512)
.|.+++|..++++++.|.+-++||..+.+ .++. ...+.++.+.+++|...+++.|+.....-|=- .+.++
T Consensus 195 d~q~s~d~T~FiT~s~Dttakl~D~~tl~--v~Kt---y~te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEA 269 (327)
T KOG0643|consen 195 DLQFSRDRTYFITGSKDTTAKLVDVRTLE--VLKT---YTTERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEA 269 (327)
T ss_pred cccccCCcceEEecccCccceeeecccee--eEEE---eeecccccceecccccceEEecCCceeeeeeeecccccchhh
Confidence 99999999999999999999999987633 2233 33346688899999988887776433222221 11111
Q ss_pred --------CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 354 --------ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 354 --------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
+.+....+|-++|++|+|+|+| ...+||+.||.|++.-++.
T Consensus 270 rFyh~i~eEEigrvkGHFGPINsvAfhPdG-ksYsSGGEDG~VR~h~Fd~ 318 (327)
T KOG0643|consen 270 RFYHLIFEEEIGRVKGHFGPINSVAFHPDG-KSYSSGGEDGYVRLHHFDS 318 (327)
T ss_pred hHHHHHHHHHhccccccccCcceeEECCCC-cccccCCCCceEEEEEecc
Confidence 1234578999999999999999 8999999999999987654
No 42
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=1.3e-35 Score=247.59 Aligned_cols=294 Identities=18% Similarity=0.306 Sum_probs=247.5
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
|....+.|..| ||||+||++|+.||-|.+||..+++.. ++...+....+.-+..+|.|+.|+.|...|++|+
T Consensus 211 g~KSh~EcA~F---SPDgqyLvsgSvDGFiEVWny~~GKlr-----KDLkYQAqd~fMMmd~aVlci~FSRDsEMlAsGs 282 (508)
T KOG0275|consen 211 GQKSHVECARF---SPDGQYLVSGSVDGFIEVWNYTTGKLR-----KDLKYQAQDNFMMMDDAVLCISFSRDSEMLASGS 282 (508)
T ss_pred ccccchhheee---CCCCceEeeccccceeeeehhccchhh-----hhhhhhhhcceeecccceEEEeecccHHHhhccC
Confidence 45566777777 999999999999999999998877542 1222333445667889999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
.||.|+||.+.+|.|++.|. .|...|+|+.|+.++ ..+++++.|.++++.-+..+++++
T Consensus 283 qDGkIKvWri~tG~ClRrFdrAHtkGvt~l~FSrD~-SqiLS~sfD~tvRiHGlKSGK~LK------------------- 342 (508)
T KOG0275|consen 283 QDGKIKVWRIETGQCLRRFDRAHTKGVTCLSFSRDN-SQILSASFDQTVRIHGLKSGKCLK------------------- 342 (508)
T ss_pred cCCcEEEEEEecchHHHHhhhhhccCeeEEEEccCc-chhhcccccceEEEeccccchhHH-------------------
Confidence 99999999999999999996 899999999999988 889999999999999998776554
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-C
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-N 285 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~ 285 (512)
.+++|...|+...|.++|..+++++ .||+|++|+..+..+..++..+ +...+|.++..-| +
T Consensus 343 --------EfrGHsSyvn~a~ft~dG~~iisaS-sDgtvkvW~~KtteC~~Tfk~~---------~~d~~vnsv~~~PKn 404 (508)
T KOG0275|consen 343 --------EFRGHSSYVNEATFTDDGHHIISAS-SDGTVKVWHGKTTECLSTFKPL---------GTDYPVNSVILLPKN 404 (508)
T ss_pred --------HhcCccccccceEEcCCCCeEEEec-CCccEEEecCcchhhhhhccCC---------CCcccceeEEEcCCC
Confidence 6678999999999999999999866 6999999999999988776432 2345677777776 4
Q ss_pred CCEEEEEecCCeEEEEEcccCCCCceEeeee-ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccC
Q 010390 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDG 364 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~ 364 (512)
...++++...++|.+.++. ...++.+.. ....+...+.+.+|.|.++.+.+.|+.++.|.+.+++. ..++.-|+.
T Consensus 405 peh~iVCNrsntv~imn~q---GQvVrsfsSGkREgGdFi~~~lSpkGewiYcigED~vlYCF~~~sG~L-E~tl~VhEk 480 (508)
T KOG0275|consen 405 PEHFIVCNRSNTVYIMNMQ---GQVVRSFSSGKREGGDFINAILSPKGEWIYCIGEDGVLYCFSVLSGKL-ERTLPVHEK 480 (508)
T ss_pred CceEEEEcCCCeEEEEecc---ceEEeeeccCCccCCceEEEEecCCCcEEEEEccCcEEEEEEeecCce-eeeeecccc
Confidence 5688899999999999974 344555543 23334566789999999999999999999999999877 467888999
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 365 EVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.|..++-+|.. ++|++-+.||.+++|.
T Consensus 481 dvIGl~HHPHq-NllAsYsEDgllKLWk 507 (508)
T KOG0275|consen 481 DVIGLTHHPHQ-NLLASYSEDGLLKLWK 507 (508)
T ss_pred cccccccCccc-chhhhhcccchhhhcC
Confidence 99999999998 8999999999999995
No 43
>KOG0285 consensus Pleiotropic regulator 1 [RNA processing and modification]
Probab=100.00 E-value=2.8e-34 Score=242.57 Aligned_cols=256 Identities=14% Similarity=0.222 Sum_probs=225.7
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
+..+.+++|.+.|.|+++.|.++++++|+.|++|+|||+.+|++..++.+|...|..+++++.. .++++++.|+.|+.|
T Consensus 142 Kl~rVi~gHlgWVr~vavdP~n~wf~tgs~DrtikIwDlatg~LkltltGhi~~vr~vavS~rH-pYlFs~gedk~VKCw 220 (460)
T KOG0285|consen 142 KLYRVISGHLGWVRSVAVDPGNEWFATGSADRTIKIWDLATGQLKLTLTGHIETVRGVAVSKRH-PYLFSAGEDKQVKCW 220 (460)
T ss_pred eehhhhhhccceEEEEeeCCCceeEEecCCCceeEEEEcccCeEEEeecchhheeeeeeecccC-ceEEEecCCCeeEEE
Confidence 4567788999999999999999999999999999999999999999999999999999999988 899999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
|++..+. ++...+|-..|.|++.+|.-..++++| .|..+++||+++...+.
T Consensus 221 DLe~nkv---------------------------IR~YhGHlS~V~~L~lhPTldvl~t~g-rDst~RvWDiRtr~~V~- 271 (460)
T KOG0285|consen 221 DLEYNKV---------------------------IRHYHGHLSGVYCLDLHPTLDVLVTGG-RDSTIRVWDIRTRASVH- 271 (460)
T ss_pred echhhhh---------------------------HHHhccccceeEEEeccccceeEEecC-CcceEEEeeecccceEE-
Confidence 9986543 335668889999999999999888855 89999999999988776
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
.+.+|..+|.++.+.|....+++|+.|++|++||++.+. ....+..|. ..+.+++.+|....+|++
T Consensus 272 ----------~l~GH~~~V~~V~~~~~dpqvit~S~D~tvrlWDl~agk--t~~tlt~hk--ksvral~lhP~e~~fASa 337 (460)
T KOG0285|consen 272 ----------VLSGHTNPVASVMCQPTDPQVITGSHDSTVRLWDLRAGK--TMITLTHHK--KSVRALCLHPKENLFASA 337 (460)
T ss_pred ----------EecCCCCcceeEEeecCCCceEEecCCceEEEeeeccCc--eeEeeeccc--ceeeEEecCCchhhhhcc
Confidence 588999999999999988899999999999999998743 344444443 447789999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
+.|. |+-|++..+... ..+.+|...|++++...|+ ++++|++.|.+.+||.++|-.-+..
T Consensus 338 s~dn-ik~w~~p~g~f~-~nlsgh~~iintl~~nsD~--v~~~G~dng~~~fwdwksg~nyQ~~ 397 (460)
T KOG0285|consen 338 SPDN-IKQWKLPEGEFL-QNLSGHNAIINTLSVNSDG--VLVSGGDNGSIMFWDWKSGHNYQRG 397 (460)
T ss_pred CCcc-ceeccCCccchh-hccccccceeeeeeeccCc--eEEEcCCceEEEEEecCcCcccccc
Confidence 9886 999999988774 5589999999999999986 9999999999999999998766653
No 44
>KOG0265 consensus U5 snRNP-specific protein-like factor and related proteins [RNA processing and modification]
Probab=100.00 E-value=6.6e-34 Score=234.96 Aligned_cols=259 Identities=18% Similarity=0.284 Sum_probs=219.5
Q ss_pred ccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCC-CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390 98 KARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAE-KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFA 176 (512)
Q Consensus 98 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 176 (512)
..++..+.+|++.|+.+.|+|+|.+|++|+.|..|.+|++. ..+....+++|.++|..+.|.+++ +.+++++.|.+|+
T Consensus 37 ~ap~m~l~gh~geI~~~~F~P~gs~~aSgG~Dr~I~LWnv~gdceN~~~lkgHsgAVM~l~~~~d~-s~i~S~gtDk~v~ 115 (338)
T KOG0265|consen 37 QAPIMLLPGHKGEIYTIKFHPDGSCFASGGSDRAIVLWNVYGDCENFWVLKGHSGAVMELHGMRDG-SHILSCGTDKTVR 115 (338)
T ss_pred cchhhhcCCCcceEEEEEECCCCCeEeecCCcceEEEEeccccccceeeeccccceeEeeeeccCC-CEEEEecCCceEE
Confidence 34567788999999999999999999999999999999954 445677888999999999999998 9999999999999
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~ 256 (512)
.||+++++... +.+.|..-++++.-..-|..++++++.|+++++||+++....
T Consensus 116 ~wD~~tG~~~r---------------------------k~k~h~~~vNs~~p~rrg~~lv~SgsdD~t~kl~D~R~k~~~ 168 (338)
T KOG0265|consen 116 GWDAETGKRIR---------------------------KHKGHTSFVNSLDPSRRGPQLVCSGSDDGTLKLWDIRKKEAI 168 (338)
T ss_pred EEecccceeee---------------------------hhccccceeeecCccccCCeEEEecCCCceEEEEeecccchh
Confidence 99999876544 566788889999988889999999999999999999987766
Q ss_pred ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
.+. ....+++++.|..++..+.+|+-|+.|++||++.. .....+.+|. ..|+.+..+++|.++.
T Consensus 169 ~t~------------~~kyqltAv~f~d~s~qv~sggIdn~ikvWd~r~~--d~~~~lsGh~--DtIt~lsls~~gs~ll 232 (338)
T KOG0265|consen 169 KTF------------ENKYQLTAVGFKDTSDQVISGGIDNDIKVWDLRKN--DGLYTLSGHA--DTITGLSLSRYGSFLL 232 (338)
T ss_pred hcc------------ccceeEEEEEecccccceeeccccCceeeeccccC--cceEEeeccc--CceeeEEeccCCCccc
Confidence 432 23356999999999999999999999999999763 4566677775 5688999999999999
Q ss_pred EecCCCCEEEEecCCCC---CCCceecccc----CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 337 SGSSDGNAYVWQVNKPQ---ADPIKLKSHD----GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~---~~~~~~~~h~----~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+-+.|.++++||++-.. ..+..+.+|. .....++|+|++ ..+.+|+.|..+++||.....++..
T Consensus 233 snsMd~tvrvwd~rp~~p~~R~v~if~g~~hnfeknlL~cswsp~~-~~i~ags~dr~vyvwd~~~r~~lyk 303 (338)
T KOG0265|consen 233 SNSMDNTVRVWDVRPFAPSQRCVKIFQGHIHNFEKNLLKCSWSPNG-TKITAGSADRFVYVWDTTSRRILYK 303 (338)
T ss_pred cccccceEEEEEecccCCCCceEEEeecchhhhhhhcceeeccCCC-CccccccccceEEEeecccccEEEE
Confidence 99999999999997543 2244555653 345678899999 8999999999999999988765553
No 45
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=100.00 E-value=2.9e-35 Score=253.03 Aligned_cols=293 Identities=20% Similarity=0.366 Sum_probs=244.9
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.....+.-|.+.+..|.| -++...|++|+.|..|++|++..... ..+.++.+..+.|+++.|.+++
T Consensus 166 ~~~~~ld~h~gev~~v~~---l~~sdtlatgg~Dr~Ik~W~v~~~k~-----------~~~~tLaGs~g~it~~d~d~~~ 231 (459)
T KOG0288|consen 166 RALFVLDAHEGEVHDVEF---LRNSDTLATGGSDRIIKLWNVLGEKS-----------ELISTLAGSLGNITSIDFDSDN 231 (459)
T ss_pred hhhhhhhccccccceeEE---ccCcchhhhcchhhhhhhhhcccchh-----------hhhhhhhccCCCcceeeecCCC
Confidence 344567779999999999 78888999999999999999876543 3477888889999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.++++++.|+.+++|++...+...++.+|.+.|+++.|.... ..+++|+.|.+|++||+....+......
T Consensus 232 ~~~iAas~d~~~r~Wnvd~~r~~~TLsGHtdkVt~ak~~~~~-~~vVsgs~DRtiK~WDl~k~~C~kt~l~--------- 301 (459)
T KOG0288|consen 232 KHVIAASNDKNLRLWNVDSLRLRHTLSGHTDKVTAAKFKLSH-SRVVSGSADRTIKLWDLQKAYCSKTVLP--------- 301 (459)
T ss_pred ceEEeecCCCceeeeeccchhhhhhhcccccceeeehhhccc-cceeeccccchhhhhhhhhhheeccccc---------
Confidence 999999999999999999999999999999999999998766 5599999999999999987665543321
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
...+..|... ...+++|..|++|++||++........ ...+.|+++
T Consensus 302 -------------------~S~cnDI~~~---~~~~~SgH~DkkvRfwD~Rs~~~~~sv------------~~gg~vtSl 347 (459)
T KOG0288|consen 302 -------------------GSQCNDIVCS---ISDVISGHFDKKVRFWDIRSADKTRSV------------PLGGRVTSL 347 (459)
T ss_pred -------------------cccccceEec---ceeeeecccccceEEEeccCCceeeEe------------ecCcceeeE
Confidence 1234444443 445667889999999999988776532 222479999
Q ss_pred EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
..++++..|++++.|.++.+.|+++.+........+....+..+.+.|||++.|+++|+.||.|+||++.+++.......
T Consensus 348 ~ls~~g~~lLsssRDdtl~viDlRt~eI~~~~sA~g~k~asDwtrvvfSpd~~YvaAGS~dgsv~iW~v~tgKlE~~l~~ 427 (459)
T KOG0288|consen 348 DLSMDGLELLSSSRDDTLKVIDLRTKEIRQTFSAEGFKCASDWTRVVFSPDGSYVAAGSADGSVYIWSVFTGKLEKVLSL 427 (459)
T ss_pred eeccCCeEEeeecCCCceeeeecccccEEEEeeccccccccccceeEECCCCceeeeccCCCcEEEEEccCceEEEEecc
Confidence 99999999999999999999999987666666666666667788999999999999999999999999999887533333
Q ss_pred cccC-CeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 361 SHDG-EVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 361 ~h~~-~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.+.. .|++++|+|.| ..|++++.++.+.+|.
T Consensus 428 s~s~~aI~s~~W~~sG-~~Llsadk~~~v~lW~ 459 (459)
T KOG0288|consen 428 STSNAAITSLSWNPSG-SGLLSADKQKAVTLWT 459 (459)
T ss_pred CCCCcceEEEEEcCCC-chhhcccCCcceEecC
Confidence 3333 69999999999 8999999999999994
No 46
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=9.8e-34 Score=265.44 Aligned_cols=302 Identities=16% Similarity=0.276 Sum_probs=251.3
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT 125 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 125 (512)
+......|.+++| +|...++.++-..|.|++||.+-+ ..+..|..|.++|+.++|+|++.++++
T Consensus 5 fEskSsRvKglsF---HP~rPwILtslHsG~IQlWDYRM~-------------tli~rFdeHdGpVRgv~FH~~qplFVS 68 (1202)
T KOG0292|consen 5 FESKSSRVKGLSF---HPKRPWILTSLHSGVIQLWDYRMG-------------TLIDRFDEHDGPVRGVDFHPTQPLFVS 68 (1202)
T ss_pred hhcccccccceec---CCCCCEEEEeecCceeeeehhhhh-------------hHHhhhhccCCccceeeecCCCCeEEe
Confidence 3445677889999 999999999999999999998755 348889999999999999999999999
Q ss_pred EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
|+.|-.|+||+..+.+++.++.+|-+.|..+.|++.. ..++++++|.+|+||+..+.+++.
T Consensus 69 GGDDykIkVWnYk~rrclftL~GHlDYVRt~~FHhey-PWIlSASDDQTIrIWNwqsr~~ia------------------ 129 (1202)
T KOG0292|consen 69 GGDDYKIKVWNYKTRRCLFTLLGHLDYVRTVFFHHEY-PWILSASDDQTIRIWNWQSRKCIA------------------ 129 (1202)
T ss_pred cCCccEEEEEecccceehhhhccccceeEEeeccCCC-ceEEEccCCCeEEEEeccCCceEE------------------
Confidence 9999999999999999999999999999999999987 799999999999999998765543
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC----------------C--Ccccc
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW----------------P--HAESS 267 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~----------------~--~~~~~ 267 (512)
.+.+|...|+|..|+|....+++ ++.|.+|++||+...+....... + ..-..
T Consensus 130 ---------vltGHnHYVMcAqFhptEDlIVS-aSLDQTVRVWDisGLRkk~~~pg~~e~~~~~~~~~~dLfg~~DaVVK 199 (1202)
T KOG0292|consen 130 ---------VLTGHNHYVMCAQFHPTEDLIVS-ASLDQTVRVWDISGLRKKNKAPGSLEDQMRGQQGNSDLFGQTDAVVK 199 (1202)
T ss_pred ---------EEecCceEEEeeccCCccceEEE-ecccceEEEEeecchhccCCCCCCchhhhhccccchhhcCCcCeeee
Confidence 67789999999999998888777 55899999999986543322111 0 00112
Q ss_pred ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
..+++|..+|+.++|+|.-.++++|+.|..|++|.+...+.-.+.+..+|. ..+.++-|+|..++|++.+.|++|+||
T Consensus 200 ~VLEGHDRGVNwaAfhpTlpliVSG~DDRqVKlWrmnetKaWEvDtcrgH~--nnVssvlfhp~q~lIlSnsEDksirVw 277 (1202)
T KOG0292|consen 200 HVLEGHDRGVNWAAFHPTLPLIVSGADDRQVKLWRMNETKAWEVDTCRGHY--NNVSSVLFHPHQDLILSNSEDKSIRVW 277 (1202)
T ss_pred eeecccccccceEEecCCcceEEecCCcceeeEEEeccccceeehhhhccc--CCcceEEecCccceeEecCCCccEEEE
Confidence 357889999999999999999999999999999998765444455555654 457889999999999999999999999
Q ss_pred ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
|+.+... +.+++.-.+.-+.++-+|.. ++++ ++.|+-+.|+.++..+
T Consensus 278 Dm~kRt~-v~tfrrendRFW~laahP~l-NLfA-AgHDsGm~VFkleREr 324 (1202)
T KOG0292|consen 278 DMTKRTS-VQTFRRENDRFWILAAHPEL-NLFA-AGHDSGMIVFKLERER 324 (1202)
T ss_pred ecccccc-eeeeeccCCeEEEEEecCCc-ceee-eecCCceEEEEEcccC
Confidence 9988766 46776667889999999987 5555 4556667888887443
No 47
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=7.1e-34 Score=266.62 Aligned_cols=271 Identities=22% Similarity=0.371 Sum_probs=212.8
Q ss_pred eecC-CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCC------Cc-----------------cccc-------
Q 010390 44 VEHH-GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKL------PS-----------------FACH------- 92 (512)
Q Consensus 44 ~~~~-gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~------~~-----------------~~~~------- 92 (512)
.+.. .|.+.|.++.| |+||+|||+||.||.|+||.+...+ .. ....
T Consensus 260 Qe~~~ah~gaIw~mKF---S~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~ 336 (712)
T KOG0283|consen 260 QEISNAHKGAIWAMKF---SHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRT 336 (712)
T ss_pred eccccccCCcEEEEEe---CCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCccccccccccccc
Confidence 4455 79999999999 9999999999999999999976610 00 0000
Q ss_pred -----------------cccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEE
Q 010390 93 -----------------RENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKS 155 (512)
Q Consensus 93 -----------------~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~ 155 (512)
......++++.+.||.+.|.+|.|+. ..+|++++.|.+|++|++...+|++.|. |.+.|+|
T Consensus 337 s~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSK-n~fLLSSSMDKTVRLWh~~~~~CL~~F~-HndfVTc 414 (712)
T KOG0283|consen 337 SSSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSK-NNFLLSSSMDKTVRLWHPGRKECLKVFS-HNDFVTC 414 (712)
T ss_pred cccccccCCccccCCCccccccccchhhhhccchhheeccccc-CCeeEeccccccEEeecCCCcceeeEEe-cCCeeEE
Confidence 00112457788999999999999995 4589999999999999999999999998 9999999
Q ss_pred EEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEE
Q 010390 156 LCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSI 235 (512)
Q Consensus 156 l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l 235 (512)
++|+|.+.++|++|+-||.||||++...+... +..-..-|++++|.|+|+..
T Consensus 415 VaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~----------------------------W~Dl~~lITAvcy~PdGk~a 466 (712)
T KOG0283|consen 415 VAFNPVDDRYFISGSLDGKVRLWSISDKKVVD----------------------------WNDLRDLITAVCYSPDGKGA 466 (712)
T ss_pred EEecccCCCcEeecccccceEEeecCcCeeEe----------------------------ehhhhhhheeEEeccCCceE
Confidence 99999998999999999999999998655332 22223579999999999988
Q ss_pred EEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEee
Q 010390 236 ATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHF 314 (512)
Q Consensus 236 ~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 314 (512)
++ |+.+|.+++|++...+............ ....+ ..|+.+.+.|.. ..+++.+.|..|+|||.++ ...+..+
T Consensus 467 vI-Gt~~G~C~fY~t~~lk~~~~~~I~~~~~--Kk~~~-~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~--~~lv~Kf 540 (712)
T KOG0283|consen 467 VI-GTFNGYCRFYDTEGLKLVSDFHIRLHNK--KKKQG-KRITGLQFFPGDPDEVLVTSNDSRIRIYDGRD--KDLVHKF 540 (712)
T ss_pred EE-EEeccEEEEEEccCCeEEEeeeEeeccC--ccccC-ceeeeeEecCCCCCeEEEecCCCceEEEeccc--hhhhhhh
Confidence 87 7799999999999877654432211111 11222 279999998744 4688888999999999865 4456666
Q ss_pred eeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 315 SGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 315 ~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
.+......-....|+.||++|++|++|..|+||++....
T Consensus 541 KG~~n~~SQ~~Asfs~Dgk~IVs~seDs~VYiW~~~~~~ 579 (712)
T KOG0283|consen 541 KGFRNTSSQISASFSSDGKHIVSASEDSWVYIWKNDSFN 579 (712)
T ss_pred cccccCCcceeeeEccCCCEEEEeecCceEEEEeCCCCc
Confidence 666555555678999999999999999999999986543
No 48
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.6e-33 Score=253.18 Aligned_cols=286 Identities=17% Similarity=0.271 Sum_probs=247.6
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
.+..|.+.|.+|.+ +|...+++++-.+|.|.|||.++.. .++.+.-..-+|++..|-+..++++
T Consensus 8 k~~~rSdRVKsVd~---HPtePw~la~LynG~V~IWnyetqt-------------mVksfeV~~~PvRa~kfiaRknWiv 71 (794)
T KOG0276|consen 8 KFQSRSDRVKSVDF---HPTEPWILAALYNGDVQIWNYETQT-------------MVKSFEVSEVPVRAAKFIARKNWIV 71 (794)
T ss_pred HhhccCCceeeeec---CCCCceEEEeeecCeeEEEecccce-------------eeeeeeecccchhhheeeeccceEE
Confidence 34458899999999 9999999999999999999998763 3777888889999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+|+.|..|+||+.++++.+..|..|.+.|.+++.+|.. .+++++++|-+|++||.+..
T Consensus 72 ~GsDD~~IrVfnynt~ekV~~FeAH~DyIR~iavHPt~-P~vLtsSDDm~iKlW~we~~--------------------- 129 (794)
T KOG0276|consen 72 TGSDDMQIRVFNYNTGEKVKTFEAHSDYIRSIAVHPTL-PYVLTSSDDMTIKLWDWENE--------------------- 129 (794)
T ss_pred EecCCceEEEEecccceeeEEeeccccceeeeeecCCC-CeEEecCCccEEEEeeccCc---------------------
Confidence 99999999999999999999999999999999999998 79999999999999999753
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
......+.+|...|++++|+|....-+++++.|++|++|.+.+..... .+.+|..+|+|+.+-+
T Consensus 130 -----wa~~qtfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs~~~nf-----------Tl~gHekGVN~Vdyy~ 193 (794)
T KOG0276|consen 130 -----WACEQTFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGSPHPNF-----------TLEGHEKGVNCVDYYT 193 (794)
T ss_pred -----eeeeeEEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCCCCCce-----------eeeccccCcceEEecc
Confidence 233447789999999999999877777778899999999998877666 5789999999999987
Q ss_pred CC--CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 285 NG--VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 285 ~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
.| .+|++|+.|..|+|||..+ ..++.++.+|..+ +..+.|+|.-.++++|+.||+++||+..+-+.. .++.-.
T Consensus 194 ~gdkpylIsgaDD~tiKvWDyQt--k~CV~TLeGHt~N--vs~v~fhp~lpiiisgsEDGTvriWhs~Ty~lE-~tLn~g 268 (794)
T KOG0276|consen 194 GGDKPYLISGADDLTIKVWDYQT--KSCVQTLEGHTNN--VSFVFFHPELPIIISGSEDGTVRIWNSKTYKLE-KTLNYG 268 (794)
T ss_pred CCCcceEEecCCCceEEEeecch--HHHHHHhhccccc--ceEEEecCCCcEEEEecCCccEEEecCcceehh-hhhhcC
Confidence 54 6999999999999999876 5677888888644 777999999999999999999999998887653 455555
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~v 390 (512)
-+.|+|++-.+.+ ..++.|.+.|.|.+
T Consensus 269 leRvW~I~~~k~~-~~i~vG~Deg~i~v 295 (794)
T KOG0276|consen 269 LERVWCIAAHKGD-GKIAVGFDEGSVTV 295 (794)
T ss_pred CceEEEEeecCCC-CeEEEeccCCcEEE
Confidence 6789999999887 77888887776543
No 49
>KOG0292 consensus Vesicle coat complex COPI, alpha subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=8.8e-33 Score=259.11 Aligned_cols=282 Identities=19% Similarity=0.304 Sum_probs=224.2
Q ss_pred ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390 36 FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115 (512)
Q Consensus 36 ~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 115 (512)
+...+.++-.+.+|.+||++|.| +|.+.++++|+.|-.|+||+.+..++ +.++.+|-+-|+.+.
T Consensus 37 DYRM~tli~rFdeHdGpVRgv~F---H~~qplFVSGGDDykIkVWnYk~rrc-------------lftL~GHlDYVRt~~ 100 (1202)
T KOG0292|consen 37 DYRMGTLIDRFDEHDGPVRGVDF---HPTQPLFVSGGDDYKIKVWNYKTRRC-------------LFTLLGHLDYVRTVF 100 (1202)
T ss_pred hhhhhhHHhhhhccCCccceeee---cCCCCeEEecCCccEEEEEeccccee-------------hhhhccccceeEEee
Confidence 56667888899999999999999 99999999999999999999987644 888999999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 116 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
|++.-.+|++++.|.+|+||++.+++++..+.+|...|.|..|+|.. .++++++-|.+|++||+...+....... ...
T Consensus 101 FHheyPWIlSASDDQTIrIWNwqsr~~iavltGHnHYVMcAqFhptE-DlIVSaSLDQTVRVWDisGLRkk~~~pg-~~e 178 (1202)
T KOG0292|consen 101 FHHEYPWILSASDDQTIRIWNWQSRKCIAVLTGHNHYVMCAQFHPTE-DLIVSASLDQTVRVWDISGLRKKNKAPG-SLE 178 (1202)
T ss_pred ccCCCceEEEccCCCeEEEEeccCCceEEEEecCceEEEeeccCCcc-ceEEEecccceEEEEeecchhccCCCCC-Cch
Confidence 99999999999999999999999999999999999999999999987 8999999999999999976554433222 000
Q ss_pred eecccccc-ccccc--ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc
Q 010390 196 FSSAVVKG-AHLLS--QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET 272 (512)
Q Consensus 196 ~~~~~~~~-~~~~~--~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 272 (512)
........ ..+.. ..--...+.+|+..|+-++|+|.-..+++ |++|..|++|.+...+.-..- ...+
T Consensus 179 ~~~~~~~~~~dLfg~~DaVVK~VLEGHDRGVNwaAfhpTlpliVS-G~DDRqVKlWrmnetKaWEvD---------tcrg 248 (1202)
T KOG0292|consen 179 DQMRGQQGNSDLFGQTDAVVKHVLEGHDRGVNWAAFHPTLPLIVS-GADDRQVKLWRMNETKAWEVD---------TCRG 248 (1202)
T ss_pred hhhhccccchhhcCCcCeeeeeeecccccccceEEecCCcceEEe-cCCcceeeEEEeccccceeeh---------hhhc
Confidence 00000000 00111 11122357799999999999999887776 668999999998865543322 5788
Q ss_pred cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 273 RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 273 ~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
|...|.++-|+|...++++.+.|++|++||+.. ...+..+.... .....++.+|..+++++|-+.| +.+|.++
T Consensus 249 H~nnVssvlfhp~q~lIlSnsEDksirVwDm~k--Rt~v~tfrren--dRFW~laahP~lNLfAAgHDsG-m~VFkle 321 (1202)
T KOG0292|consen 249 HYNNVSSVLFHPHQDLILSNSEDKSIRVWDMTK--RTSVQTFRREN--DRFWILAAHPELNLFAAGHDSG-MIVFKLE 321 (1202)
T ss_pred ccCCcceEEecCccceeEecCCCccEEEEeccc--ccceeeeeccC--CeEEEEEecCCcceeeeecCCc-eEEEEEc
Confidence 999999999999999999999999999999865 34455554332 3456688899999888887555 5566554
No 50
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=100.00 E-value=2.1e-33 Score=248.15 Aligned_cols=309 Identities=19% Similarity=0.294 Sum_probs=236.4
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
...+.+.+|+..|.++++ .|.|..|++|+.|..|++||++.....+..+ +.+... ....|++++|++.|
T Consensus 158 shEi~l~hgtk~Vsal~~---Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~f------r~l~P~--E~h~i~sl~ys~Tg 226 (641)
T KOG0772|consen 158 SHEIQLKHGTKIVSALAV---DPSGARFVSGSLDYTVKFWDFQGMDASMRSF------RQLQPC--ETHQINSLQYSVTG 226 (641)
T ss_pred cceEeccCCceEEEEeee---cCCCceeeeccccceEEEEecccccccchhh------hccCcc--cccccceeeecCCC
Confidence 445678899999999999 9999999999999999999998876544322 222222 33589999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCeee------------ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390 121 TNILTASGDQTIKIWDAEKKKCT------------GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~------------~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 188 (512)
..|++.+.....+|+|-...+.. ..-++|...++|.+|+|.....|++++.||++++||++.......
T Consensus 227 ~~iLvvsg~aqakl~DRdG~~~~e~~KGDQYI~Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k~q~q 306 (641)
T KOG0772|consen 227 DQILVVSGSAQAKLLDRDGFEIVEFSKGDQYIRDMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTKSQLQ 306 (641)
T ss_pred CeEEEEecCcceeEEccCCceeeeeeccchhhhhhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCchhhee
Confidence 99998888899999995443322 223679999999999999989999999999999999987653221
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
... .....+..-+++.++|+++++.+++ |..||.|.+|+..+........
T Consensus 307 Vik---------------------~k~~~g~Rv~~tsC~~nrdg~~iAa-gc~DGSIQ~W~~~~~~v~p~~~-------- 356 (641)
T KOG0772|consen 307 VIK---------------------TKPAGGKRVPVTSCAWNRDGKLIAA-GCLDGSIQIWDKGSRTVRPVMK-------- 356 (641)
T ss_pred EEe---------------------eccCCCcccCceeeecCCCcchhhh-cccCCceeeeecCCcccccceE--------
Confidence 100 0011133457899999999999776 6689999999986543322111
Q ss_pred ccccccc--CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC------
Q 010390 269 AKETRLH--GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS------ 340 (512)
Q Consensus 269 ~~~~~~~--~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------ 340 (512)
....|.. .|+|+.|+++|++|++-+.|+++++||+++.+ .++....+....-.-+.++|||+.++|++|+.
T Consensus 357 vk~AH~~g~~Itsi~FS~dg~~LlSRg~D~tLKvWDLrq~k-kpL~~~tgL~t~~~~tdc~FSPd~kli~TGtS~~~~~~ 435 (641)
T KOG0772|consen 357 VKDAHLPGQDITSISFSYDGNYLLSRGFDDTLKVWDLRQFK-KPLNVRTGLPTPFPGTDCCFSPDDKLILTGTSAPNGMT 435 (641)
T ss_pred eeeccCCCCceeEEEeccccchhhhccCCCceeeeeccccc-cchhhhcCCCccCCCCccccCCCceEEEecccccCCCC
Confidence 3455555 79999999999999999999999999998754 45555554444444556899999999999864
Q ss_pred CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
.|.+.+||..+.... +.+.-....|..+.|+|.- +.|+.|+.||.++|+-=
T Consensus 436 ~g~L~f~d~~t~d~v-~ki~i~~aSvv~~~WhpkL-NQi~~gsgdG~~~vyYd 486 (641)
T KOG0772|consen 436 AGTLFFFDRMTLDTV-YKIDISTASVVRCLWHPKL-NQIFAGSGDGTAHVYYD 486 (641)
T ss_pred CceEEEEeccceeeE-EEecCCCceEEEEeecchh-hheeeecCCCceEEEEC
Confidence 467999998877653 4454557789999999988 78888888999998643
No 51
>KOG0645 consensus WD40 repeat protein [General function prediction only]
Probab=100.00 E-value=4.2e-32 Score=221.13 Aligned_cols=251 Identities=19% Similarity=0.301 Sum_probs=211.0
Q ss_pred ceeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCC---Ceeeecc-cCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 100 RISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEK---KKCTGAL-MGHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~---~~~~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
.++.+++|.+.|..++|+|- |..|++|+.|+.|+||+... -.+...+ .+|+..|.+++|+|.+ ++|++++.|.+
T Consensus 6 ~~~~~~gh~~r~W~~awhp~~g~ilAscg~Dk~vriw~~~~~~s~~ck~vld~~hkrsVRsvAwsp~g-~~La~aSFD~t 84 (312)
T KOG0645|consen 6 LEQKLSGHKDRVWSVAWHPGKGVILASCGTDKAVRIWSTSSGDSWTCKTVLDDGHKRSVRSVAWSPHG-RYLASASFDAT 84 (312)
T ss_pred eEEeecCCCCcEEEEEeccCCceEEEeecCCceEEEEecCCCCcEEEEEeccccchheeeeeeecCCC-cEEEEeeccce
Confidence 36778899999999999997 88999999999999999874 3444444 4799999999999998 89999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
+.||.-..++ ......+.+|+..|.|++|+++|.+|++++ .|..|-||.+....
T Consensus 85 ~~Iw~k~~~e-------------------------fecv~~lEGHEnEVK~Vaws~sG~~LATCS-RDKSVWiWe~dedd 138 (312)
T KOG0645|consen 85 VVIWKKEDGE-------------------------FECVATLEGHENEVKCVAWSASGNYLATCS-RDKSVWIWEIDEDD 138 (312)
T ss_pred EEEeecCCCc-------------------------eeEEeeeeccccceeEEEEcCCCCEEEEee-CCCeEEEEEecCCC
Confidence 9999866443 233557889999999999999999999855 89999999998654
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc-cCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL-QLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
...... .++.|...|..+.|+|...+|++++.|++|++|+-. ...-..+..+.++.. .+.+++|++.|.
T Consensus 139 Efec~a--------VL~~HtqDVK~V~WHPt~dlL~S~SYDnTIk~~~~~~dddW~c~~tl~g~~~--TVW~~~F~~~G~ 208 (312)
T KOG0645|consen 139 EFECIA--------VLQEHTQDVKHVIWHPTEDLLFSCSYDNTIKVYRDEDDDDWECVQTLDGHEN--TVWSLAFDNIGS 208 (312)
T ss_pred cEEEEe--------eeccccccccEEEEcCCcceeEEeccCCeEEEEeecCCCCeeEEEEecCccc--eEEEEEecCCCc
Confidence 433221 678899999999999999999999999999999976 444456777777753 688999999999
Q ss_pred EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
.|++++.|++++||..... ....|...++.+.|. + ..|+|++.|+.|+++.-..
T Consensus 209 rl~s~sdD~tv~Iw~~~~~-----~~~~~sr~~Y~v~W~-~--~~IaS~ggD~~i~lf~~s~ 262 (312)
T KOG0645|consen 209 RLVSCSDDGTVSIWRLYTD-----LSGMHSRALYDVPWD-N--GVIASGGGDDAIRLFKESD 262 (312)
T ss_pred eEEEecCCcceEeeeeccC-----cchhcccceEeeeec-c--cceEeccCCCEEEEEEecC
Confidence 9999999999999986532 234578899999998 4 4999999999999998763
No 52
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=100.00 E-value=3.5e-33 Score=231.62 Aligned_cols=309 Identities=19% Similarity=0.313 Sum_probs=243.5
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcc-----ccccccccccceeccccCCCcEEEEEEec
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSF-----ACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
..+..|..++.+-+| |+||.++|+|+.|..|+|.|++...... ...........++++..|.++|+++.|+|
T Consensus 106 ~ylt~HK~~cR~aaf---s~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 106 KYLTSHKSPCRAAAF---SPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred EEEeecccceeeeee---CCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 456679999999999 9999999999999999999987432111 01111122356788999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeee---ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCT---GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~---~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
....|++|+.|++|+++|+...... ..++ ...+|.++.|+|.| .+|+.|..-.++++||+++.++.....
T Consensus 183 re~ILiS~srD~tvKlFDfsK~saKrA~K~~q-d~~~vrsiSfHPsG-efllvgTdHp~~rlYdv~T~Qcfvsan----- 255 (430)
T KOG0640|consen 183 RETILISGSRDNTVKLFDFSKTSAKRAFKVFQ-DTEPVRSISFHPSG-EFLLVGTDHPTLRLYDVNTYQCFVSAN----- 255 (430)
T ss_pred hhheEEeccCCCeEEEEecccHHHHHHHHHhh-ccceeeeEeecCCC-ceEEEecCCCceeEEeccceeEeeecC-----
Confidence 9999999999999999998765333 2333 44689999999988 899999999999999999876543221
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
.-..|.+.|+++.+++.++..++ ++.||.|++||--+++++.++...+ ...
T Consensus 256 -------------------Pd~qht~ai~~V~Ys~t~~lYvT-aSkDG~IklwDGVS~rCv~t~~~AH---------~gs 306 (430)
T KOG0640|consen 256 -------------------PDDQHTGAITQVRYSSTGSLYVT-ASKDGAIKLWDGVSNRCVRTIGNAH---------GGS 306 (430)
T ss_pred -------------------cccccccceeEEEecCCccEEEE-eccCCcEEeeccccHHHHHHHHhhc---------CCc
Confidence 23467889999999999988877 6689999999999999887653222 234
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeecee---ceeEEEEEECCCCCEEEEecC-CCCEEEEecCC
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI---ESFYVKSEICPNASHILSGSS-DGNAYVWQVNK 351 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~---~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~ 351 (512)
.|.+..|..+|+++++++.|..+++|.+.+ ...+..+.+... ...-+...|+....+++.-.+ .+.+.-||.++
T Consensus 307 evcSa~Ftkn~kyiLsSG~DS~vkLWEi~t--~R~l~~YtGAg~tgrq~~rtqAvFNhtEdyVl~pDEas~slcsWdaRt 384 (430)
T KOG0640|consen 307 EVCSAVFTKNGKYILSSGKDSTVKLWEIST--GRMLKEYTGAGTTGRQKHRTQAVFNHTEDYVLFPDEASNSLCSWDART 384 (430)
T ss_pred eeeeEEEccCCeEEeecCCcceeeeeeecC--CceEEEEecCCcccchhhhhhhhhcCccceEEccccccCceeeccccc
Confidence 699999999999999999999999999976 345555555421 122334567777888776554 46799999998
Q ss_pred CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 352 PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 352 ~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.......-.+|.+.+..+.-+|.+ --+++|++|-.+++|--.
T Consensus 385 adr~~l~slgHn~a~R~i~HSP~~-p~FmTcsdD~raRFWyrr 426 (430)
T KOG0640|consen 385 ADRVALLSLGHNGAVRWIVHSPVE-PAFMTCSDDFRARFWYRR 426 (430)
T ss_pred hhhhhhcccCCCCCceEEEeCCCC-Cceeeecccceeeeeeec
Confidence 876555667999999999999999 699999999999999643
No 53
>KOG0306 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=100.00 E-value=2.1e-32 Score=252.40 Aligned_cols=301 Identities=19% Similarity=0.262 Sum_probs=249.9
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
.+..||...|.++++ |.|...+++|+ .+.|+||+..+.+. ++++.. +-+.+..|.|.++++
T Consensus 367 i~~~GHR~dVRsl~v---S~d~~~~~Sga-~~SikiWn~~t~kc-------------iRTi~~--~y~l~~~Fvpgd~~I 427 (888)
T KOG0306|consen 367 IEIGGHRSDVRSLCV---SSDSILLASGA-GESIKIWNRDTLKC-------------IRTITC--GYILASKFVPGDRYI 427 (888)
T ss_pred eeeccchhheeEEEe---ecCceeeeecC-CCcEEEEEccCcce-------------eEEecc--ccEEEEEecCCCceE
Confidence 567899999999999 88887888776 66899999987643 555543 489999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++|...|.+.++|+.+...+.+++.|.+.|++++.+|++ ..+++|+.|.+|++||..-.........
T Consensus 428 v~G~k~Gel~vfdlaS~~l~Eti~AHdgaIWsi~~~pD~-~g~vT~saDktVkfWdf~l~~~~~gt~~------------ 494 (888)
T KOG0306|consen 428 VLGTKNGELQVFDLASASLVETIRAHDGAIWSISLSPDN-KGFVTGSADKTVKFWDFKLVVSVPGTQK------------ 494 (888)
T ss_pred EEeccCCceEEEEeehhhhhhhhhccccceeeeeecCCC-CceEEecCCcEEEEEeEEEEeccCcccc------------
Confidence 999999999999999999999999999999999999998 8999999999999999763221000000
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
........+...-...|.|+.++||++++++ +--|.+|++|-+++.+-.. .+.+|.-+|.||.++
T Consensus 495 ---k~lsl~~~rtLel~ddvL~v~~Spdgk~LaV-sLLdnTVkVyflDtlKFfl-----------sLYGHkLPV~smDIS 559 (888)
T KOG0306|consen 495 ---KVLSLKHTRTLELEDDVLCVSVSPDGKLLAV-SLLDNTVKVYFLDTLKFFL-----------SLYGHKLPVLSMDIS 559 (888)
T ss_pred ---eeeeeccceEEeccccEEEEEEcCCCcEEEE-EeccCeEEEEEecceeeee-----------eecccccceeEEecc
Confidence 0000111122344678999999999999998 5589999999999988766 588999999999999
Q ss_pred CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD 363 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~ 363 (512)
||++.+++|+.|.+|++|-+.-++ +-+.+.+|. ..++++.|-|...++.+++.|+.|+-||-.+... +..+.+|.
T Consensus 560 ~DSklivTgSADKnVKiWGLdFGD--CHKS~fAHd--DSvm~V~F~P~~~~FFt~gKD~kvKqWDg~kFe~-iq~L~~H~ 634 (888)
T KOG0306|consen 560 PDSKLIVTGSADKNVKIWGLDFGD--CHKSFFAHD--DSVMSVQFLPKTHLFFTCGKDGKVKQWDGEKFEE-IQKLDGHH 634 (888)
T ss_pred CCcCeEEeccCCCceEEeccccch--hhhhhhccc--CceeEEEEcccceeEEEecCcceEEeechhhhhh-heeeccch
Confidence 999999999999999999986543 334444543 4478899999999999999999999999988776 57899999
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
..|++++.+|+| .+++|+|.|.+|++|......
T Consensus 635 ~ev~cLav~~~G-~~vvs~shD~sIRlwE~tde~ 667 (888)
T KOG0306|consen 635 SEVWCLAVSPNG-SFVVSSSHDKSIRLWERTDEI 667 (888)
T ss_pred heeeeeEEcCCC-CeEEeccCCceeEeeeccCcc
Confidence 999999999999 899999999999999976643
No 54
>KOG0282 consensus mRNA splicing factor [Function unknown]
Probab=100.00 E-value=5.4e-34 Score=250.24 Aligned_cols=264 Identities=16% Similarity=0.271 Sum_probs=221.5
Q ss_pred ccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCC-CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390 96 AEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG 173 (512)
Q Consensus 96 ~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 173 (512)
.+.+.+..+.+|...|+++.|.| .+.+|++++.|+.|+||++.. +++++++.+|..+|.+++|++++ ..|++++.|+
T Consensus 202 ~Pkk~~~~~~gH~kgvsai~~fp~~~hLlLS~gmD~~vklW~vy~~~~~lrtf~gH~k~Vrd~~~s~~g-~~fLS~sfD~ 280 (503)
T KOG0282|consen 202 LPKKLSHNLSGHTKGVSAIQWFPKKGHLLLSGGMDGLVKLWNVYDDRRCLRTFKGHRKPVRDASFNNCG-TSFLSASFDR 280 (503)
T ss_pred ccHhheeeccCCccccchhhhccceeeEEEecCCCceEEEEEEecCcceehhhhcchhhhhhhhccccC-Ceeeeeecce
Confidence 45567899999999999999999 889999999999999999876 89999999999999999999998 8999999999
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL 253 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~ 253 (512)
.|++||++++++...+.. ...++|+.|+|++..++.+|+.|+.|+.||++++
T Consensus 281 ~lKlwDtETG~~~~~f~~----------------------------~~~~~cvkf~pd~~n~fl~G~sd~ki~~wDiRs~ 332 (503)
T KOG0282|consen 281 FLKLWDTETGQVLSRFHL----------------------------DKVPTCVKFHPDNQNIFLVGGSDKKIRQWDIRSG 332 (503)
T ss_pred eeeeeccccceEEEEEec----------------------------CCCceeeecCCCCCcEEEEecCCCcEEEEeccch
Confidence 999999999987654422 3478999999999777777889999999999999
Q ss_pred cceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
+.+. ....|.+.|..+.|-++|+++++++.|+.++||+.+.... +..... ......-++..+|+++
T Consensus 333 kvvq-----------eYd~hLg~i~~i~F~~~g~rFissSDdks~riWe~~~~v~--ik~i~~-~~~hsmP~~~~~P~~~ 398 (503)
T KOG0282|consen 333 KVVQ-----------EYDRHLGAILDITFVDEGRRFISSSDDKSVRIWENRIPVP--IKNIAD-PEMHTMPCLTLHPNGK 398 (503)
T ss_pred HHHH-----------HHHhhhhheeeeEEccCCceEeeeccCccEEEEEcCCCcc--chhhcc-hhhccCcceecCCCCC
Confidence 8765 5777889999999999999999999999999999865322 111111 1112244688999999
Q ss_pred EEEEecCCCCEEEEecCCCCC--CCceecccc--CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 334 HILSGSSDGNAYVWQVNKPQA--DPIKLKSHD--GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~~~~~--~~~~~~~h~--~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
++++-+.|+.|.+|.+...-. ....+.+|. +.-..+.||||| .+|++|+.||.+.+||..+-+++..+.
T Consensus 399 ~~~aQs~dN~i~ifs~~~~~r~nkkK~feGh~vaGys~~v~fSpDG-~~l~SGdsdG~v~~wdwkt~kl~~~lk 471 (503)
T KOG0282|consen 399 WFAAQSMDNYIAIFSTVPPFRLNKKKRFEGHSVAGYSCQVDFSPDG-RTLCSGDSDGKVNFWDWKTTKLVSKLK 471 (503)
T ss_pred eehhhccCceEEEEecccccccCHhhhhcceeccCceeeEEEcCCC-CeEEeecCCccEEEeechhhhhhhccc
Confidence 999999999999998764322 234677884 567788999999 899999999999999999888776533
No 55
>KOG0316 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=1.1e-32 Score=219.84 Aligned_cols=256 Identities=16% Similarity=0.245 Sum_probs=216.1
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
+....+..|+++|..+.|+-+|+|.++++.|.+|++|+...+.+++++.+|...|..++.+.++ ..|++|+.|..+.+|
T Consensus 8 kr~~~l~~~qgaV~avryN~dGnY~ltcGsdrtvrLWNp~rg~liktYsghG~EVlD~~~s~Dn-skf~s~GgDk~v~vw 86 (307)
T KOG0316|consen 8 KRLSILDCAQGAVRAVRYNVDGNYCLTCGSDRTVRLWNPLRGALIKTYSGHGHEVLDAALSSDN-SKFASCGGDKAVQVW 86 (307)
T ss_pred hhceeecccccceEEEEEccCCCEEEEcCCCceEEeecccccceeeeecCCCceeeeccccccc-cccccCCCCceEEEE
Confidence 3467788999999999999999999999999999999999999999999999999999999887 899999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
|+++++.. +++.+|...|+.+.|+.+...+++ |+.|..+++||.++......
T Consensus 87 DV~TGkv~---------------------------Rr~rgH~aqVNtV~fNeesSVv~S-gsfD~s~r~wDCRS~s~ePi 138 (307)
T KOG0316|consen 87 DVNTGKVD---------------------------RRFRGHLAQVNTVRFNEESSVVAS-GSFDSSVRLWDCRSRSFEPI 138 (307)
T ss_pred EcccCeee---------------------------eecccccceeeEEEecCcceEEEe-ccccceeEEEEcccCCCCcc
Confidence 99987654 377899999999999988877766 77999999999998665433
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
+ .+......|.++... +..+++|+.||+++.||++.+. ....+. ..++++++|+++++..+++
T Consensus 139 Q---------ildea~D~V~Si~v~--~heIvaGS~DGtvRtydiR~G~--l~sDy~----g~pit~vs~s~d~nc~La~ 201 (307)
T KOG0316|consen 139 Q---------ILDEAKDGVSSIDVA--EHEIVAGSVDGTVRTYDIRKGT--LSSDYF----GHPITSVSFSKDGNCSLAS 201 (307)
T ss_pred c---------hhhhhcCceeEEEec--ccEEEeeccCCcEEEEEeecce--eehhhc----CCcceeEEecCCCCEEEEe
Confidence 3 456666788888885 4579999999999999998643 222222 3457889999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceeccccCCe--EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKSHDGEV--TAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v--~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
+.|+++++.|-.+++. +..+.+|...= ...+++... ..+++|++||.|++||+.+...+..+
T Consensus 202 ~l~stlrLlDk~tGkl-L~sYkGhkn~eykldc~l~qsd-thV~sgSEDG~Vy~wdLvd~~~~sk~ 265 (307)
T KOG0316|consen 202 SLDSTLRLLDKETGKL-LKSYKGHKNMEYKLDCCLNQSD-THVFSGSEDGKVYFWDLVDETQISKL 265 (307)
T ss_pred eccceeeecccchhHH-HHHhcccccceeeeeeeecccc-eeEEeccCCceEEEEEeccceeeeee
Confidence 9999999999999887 57888997643 344566655 79999999999999999998866543
No 56
>KOG0266 consensus WD40 repeat-containing protein [General function prediction only]
Probab=100.00 E-value=2.2e-32 Score=261.83 Aligned_cols=256 Identities=22% Similarity=0.338 Sum_probs=215.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 184 (512)
|...|.++.|+++|+.|++++.|+.+++|+..+.+ ....+.+|...|.+++|+|++ .++++++.|++|++||+...
T Consensus 158 ~~~sv~~~~fs~~g~~l~~~~~~~~i~~~~~~~~~~~~~~~l~~h~~~v~~~~fs~d~-~~l~s~s~D~tiriwd~~~~- 235 (456)
T KOG0266|consen 158 ECPSVTCVDFSPDGRALAAASSDGLIRIWKLEGIKSNLLRELSGHTRGVSDVAFSPDG-SYLLSGSDDKTLRIWDLKDD- 235 (456)
T ss_pred ccCceEEEEEcCCCCeEEEccCCCcEEEeecccccchhhccccccccceeeeEECCCC-cEEEEecCCceEEEeeccCC-
Confidence 37899999999999999999999999999998777 777888999999999999998 89999999999999999432
Q ss_pred CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA 264 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 264 (512)
......+.+|...|++++|+|++ .++++|+.|++|++||+++++...
T Consensus 236 -------------------------~~~~~~l~gH~~~v~~~~f~p~g-~~i~Sgs~D~tvriWd~~~~~~~~------- 282 (456)
T KOG0266|consen 236 -------------------------GRNLKTLKGHSTYVTSVAFSPDG-NLLVSGSDDGTVRIWDVRTGECVR------- 282 (456)
T ss_pred -------------------------CeEEEEecCCCCceEEEEecCCC-CEEEEecCCCcEEEEeccCCeEEE-------
Confidence 23344677999999999999999 555557789999999999977766
Q ss_pred cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
.+..|..+|++++|++++.+|++++.|+.|++||+.++.......+.+......+..++|+|++.+++++..|+.+
T Consensus 283 ----~l~~hs~~is~~~f~~d~~~l~s~s~d~~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~fsp~~~~ll~~~~d~~~ 358 (456)
T KOG0266|consen 283 ----KLKGHSDGISGLAFSPDGNLLVSASYDGTIRVWDLETGSKLCLKLLSGAENSAPVTSVQFSPNGKYLLSASLDRTL 358 (456)
T ss_pred ----eeeccCCceEEEEECCCCCEEEEcCCCccEEEEECCCCceeeeecccCCCCCCceeEEEECCCCcEEEEecCCCeE
Confidence 5888999999999999999999999999999999977553323344443322267889999999999999999999
Q ss_pred EEEecCCCCCCCceeccccCC---eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 345 YVWQVNKPQADPIKLKSHDGE---VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 345 ~iw~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
++||+..... ...+.+|... +.+...++.+ .++++|+.|+.|++||+.++..++...
T Consensus 359 ~~w~l~~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~i~sg~~d~~v~~~~~~s~~~~~~l~ 418 (456)
T KOG0266|consen 359 KLWDLRSGKS-VGTYTGHSNLVRCIFSPTLSTGG-KLIYSGSEDGSVYVWDSSSGGILQRLE 418 (456)
T ss_pred EEEEccCCcc-eeeecccCCcceeEecccccCCC-CeEEEEeCCceEEEEeCCccchhhhhc
Confidence 9999998876 4677777664 4444556777 899999999999999999987666543
No 57
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=1e-33 Score=239.55 Aligned_cols=298 Identities=20% Similarity=0.317 Sum_probs=240.6
Q ss_pred eeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
+++..+.||.+.|.|++= +|+. ..+|+|+.||.|+|||+.... ...++++|.+.|..|++..
T Consensus 57 PFv~~L~gHrdGV~~lak---hp~~ls~~aSGs~DG~VkiWnlsqR~-------------~~~~f~AH~G~V~Gi~v~~- 119 (433)
T KOG0268|consen 57 PFVGSLDGHRDGVSCLAK---HPNKLSTVASGSCDGEVKIWNLSQRE-------------CIRTFKAHEGLVRGICVTQ- 119 (433)
T ss_pred cchhhccccccccchhhc---CcchhhhhhccccCceEEEEehhhhh-------------hhheeecccCceeeEEecc-
Confidence 456678999999999999 8877 789999999999999997653 3888999999999999975
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
..+++++.|.+|+.|.++. .+..++.+ ...+..|.-+..+ +.++|+|. .|.|||......+.
T Consensus 120 -~~~~tvgdDKtvK~wk~~~-~p~~tilg-~s~~~gIdh~~~~-~~FaTcGe--~i~IWD~~R~~Pv~------------ 181 (433)
T KOG0268|consen 120 -TSFFTVGDDKTVKQWKIDG-PPLHTILG-KSVYLGIDHHRKN-SVFATCGE--QIDIWDEQRDNPVS------------ 181 (433)
T ss_pred -cceEEecCCcceeeeeccC-Ccceeeec-ccccccccccccc-ccccccCc--eeeecccccCCccc------------
Confidence 6789999999999999865 46666653 3467777776655 78999986 59999987554433
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
.+......|.++.|+|....++.++..|+.|.+||+++...+...... ..-+.
T Consensus 182 ---------------smswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~------------mRTN~ 234 (433)
T KOG0268|consen 182 ---------------SMSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT------------MRTNT 234 (433)
T ss_pred ---------------eeecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee------------ccccc
Confidence 333445689999999999988888878999999999998876543221 23567
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
++|+|.+..+++++.|..++.||++... .++....+|. +.++.++|||.|+-+++|+.|.+|+||..+.+...-...
T Consensus 235 IswnPeafnF~~a~ED~nlY~~DmR~l~-~p~~v~~dhv--sAV~dVdfsptG~EfvsgsyDksIRIf~~~~~~SRdiYh 311 (433)
T KOG0268|consen 235 ICWNPEAFNFVAANEDHNLYTYDMRNLS-RPLNVHKDHV--SAVMDVDFSPTGQEFVSGSYDKSIRIFPVNHGHSRDIYH 311 (433)
T ss_pred eecCccccceeeccccccceehhhhhhc-ccchhhcccc--eeEEEeccCCCcchhccccccceEEEeecCCCcchhhhh
Confidence 9999988899999999999999998764 4555555553 568899999999999999999999999998765432222
Q ss_pred ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP 404 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 404 (512)
...-..|.++.|+-|. +++++||+|+.|++|.-...+.+..+.+
T Consensus 312 tkRMq~V~~Vk~S~Ds-kyi~SGSdd~nvRlWka~Aseklgv~t~ 355 (433)
T KOG0268|consen 312 TKRMQHVFCVKYSMDS-KYIISGSDDGNVRLWKAKASEKLGVITP 355 (433)
T ss_pred HhhhheeeEEEEeccc-cEEEecCCCcceeeeecchhhhcCCCCh
Confidence 2223579999999999 9999999999999999888777666544
No 58
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=100.00 E-value=9.3e-32 Score=217.95 Aligned_cols=288 Identities=19% Similarity=0.259 Sum_probs=232.9
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTN 122 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~ 122 (512)
.+.++|.++|.+|+| +.+|..||+|+.|+.+.+|+++.... ..-....+|.+.|-.++|+| ....
T Consensus 14 r~~~~~~~~v~Sv~w---n~~g~~lasgs~dktv~v~n~e~~r~-----------~~~~~~~gh~~svdql~w~~~~~d~ 79 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAW---NCDGTKLASGSFDKTVSVWNLERDRF-----------RKELVYRGHTDSVDQLCWDPKHPDL 79 (313)
T ss_pred HHhhhhhhcceEEEE---cccCceeeecccCCceEEEEecchhh-----------hhhhcccCCCcchhhheeCCCCCcc
Confidence 567899999999999 89999999999999999999976532 12334679999999999998 6678
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
+++++.|.+|++||+..++++..+....+.++ +.|+|++ .+++.++.|..|.+.|.++.+.....
T Consensus 80 ~atas~dk~ir~wd~r~~k~~~~i~~~~eni~-i~wsp~g-~~~~~~~kdD~it~id~r~~~~~~~~------------- 144 (313)
T KOG1407|consen 80 FATASGDKTIRIWDIRSGKCTARIETKGENIN-ITWSPDG-EYIAVGNKDDRITFIDARTYKIVNEE------------- 144 (313)
T ss_pred eEEecCCceEEEEEeccCcEEEEeeccCcceE-EEEcCCC-CEEEEecCcccEEEEEecccceeehh-------------
Confidence 99999999999999999999998876665554 6799998 89999999999999999876654433
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
.....+.-++|+.++..++.+. -.|.|.|......+.+. ....|.....|+.|
T Consensus 145 ---------------~~~~e~ne~~w~~~nd~Fflt~-GlG~v~ILsypsLkpv~-----------si~AH~snCicI~f 197 (313)
T KOG1407|consen 145 ---------------QFKFEVNEISWNNSNDLFFLTN-GLGCVEILSYPSLKPVQ-----------SIKAHPSNCICIEF 197 (313)
T ss_pred ---------------cccceeeeeeecCCCCEEEEec-CCceEEEEecccccccc-----------ccccCCcceEEEEE
Confidence 2233677888886666666544 37999998887666554 57888889999999
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
+|+|+++++|+.|..+.+||+... ...+.+... .-+|..+.||.+|++||+|++|..|-|=++.++... .-..+
T Consensus 198 ~p~GryfA~GsADAlvSLWD~~EL--iC~R~isRl--dwpVRTlSFS~dg~~lASaSEDh~IDIA~vetGd~~--~eI~~ 271 (313)
T KOG1407|consen 198 DPDGRYFATGSADALVSLWDVDEL--ICERCISRL--DWPVRTLSFSHDGRMLASASEDHFIDIAEVETGDRV--WEIPC 271 (313)
T ss_pred CCCCceEeeccccceeeccChhHh--hhheeeccc--cCceEEEEeccCcceeeccCccceEEeEecccCCeE--EEeec
Confidence 999999999999999999998653 233333333 345778999999999999999999999999998774 33357
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCC---------CcEEEEeCC
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDD---------YTVRLWSLE 394 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~d---------g~i~vwd~~ 394 (512)
+++...|+|+|.. .+||-+++| |.++++-+.
T Consensus 272 ~~~t~tVAWHPk~-~LLAyA~ddk~~d~~reag~vKiFG~~ 311 (313)
T KOG1407|consen 272 EGPTFTVAWHPKR-PLLAYACDDKDGDSNREAGTVKIFGLS 311 (313)
T ss_pred cCCceeEEecCCC-ceeeEEecCCCCccccccceeEEecCC
Confidence 8999999999998 688877655 456665543
No 59
>KOG0281 consensus Beta-TrCP (transducin repeats containing)/Slimb proteins [Function unknown]
Probab=100.00 E-value=3.3e-33 Score=235.22 Aligned_cols=238 Identities=19% Similarity=0.363 Sum_probs=199.9
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
....|+|+.+ |...+++|..|++|+|||.++..+...+.+|++.|.|+.|.. ..+++|+.|.+|++||+++++.+
T Consensus 196 ~skgVYClQY--DD~kiVSGlrDnTikiWD~n~~~c~~~L~GHtGSVLCLqyd~---rviisGSSDsTvrvWDv~tge~l 270 (499)
T KOG0281|consen 196 NSKGVYCLQY--DDEKIVSGLRDNTIKIWDKNSLECLKILTGHTGSVLCLQYDE---RVIVSGSSDSTVRVWDVNTGEPL 270 (499)
T ss_pred cCCceEEEEe--cchhhhcccccCceEEeccccHHHHHhhhcCCCcEEeeeccc---eEEEecCCCceEEEEeccCCchh
Confidence 4568999998 677899999999999999999999999999999999999964 79999999999999999988766
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
. .+..|...|..+.|+. .++++ ++.|..+.+||+.....+....
T Consensus 271 ~---------------------------tlihHceaVLhlrf~n--g~mvt-cSkDrsiaVWdm~sps~it~rr------ 314 (499)
T KOG0281|consen 271 N---------------------------TLIHHCEAVLHLRFSN--GYMVT-CSKDRSIAVWDMASPTDITLRR------ 314 (499)
T ss_pred h---------------------------HHhhhcceeEEEEEeC--CEEEE-ecCCceeEEEeccCchHHHHHH------
Confidence 5 4557778899998863 35555 6689999999998766432211
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
.+.+|...|+.+.|+. +++++++.|.+|++|++.+ ...+..+.+|.-. +- +.--.++++++|+.|.+|++
T Consensus 315 --VLvGHrAaVNvVdfd~--kyIVsASgDRTikvW~~st--~efvRtl~gHkRG--IA--ClQYr~rlvVSGSSDntIRl 384 (499)
T KOG0281|consen 315 --VLVGHRAAVNVVDFDD--KYIVSASGDRTIKVWSTST--CEFVRTLNGHKRG--IA--CLQYRDRLVVSGSSDNTIRL 384 (499)
T ss_pred --HHhhhhhheeeecccc--ceEEEecCCceEEEEeccc--eeeehhhhccccc--ce--ehhccCeEEEecCCCceEEE
Confidence 5788999999999964 4999999999999999876 4456677777643 32 33356899999999999999
Q ss_pred EecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 347 WQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 347 w~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
||+..+.+ +..+.||+.-|.++.|.. ..+++|+.||+|+|||+..+.-.
T Consensus 385 wdi~~G~c-LRvLeGHEeLvRciRFd~---krIVSGaYDGkikvWdl~aaldp 433 (499)
T KOG0281|consen 385 WDIECGAC-LRVLEGHEELVRCIRFDN---KRIVSGAYDGKIKVWDLQAALDP 433 (499)
T ss_pred EeccccHH-HHHHhchHHhhhheeecC---ceeeeccccceEEEEecccccCC
Confidence 99999987 588999999999999964 68999999999999999987644
No 60
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=100.00 E-value=6.3e-31 Score=219.61 Aligned_cols=291 Identities=20% Similarity=0.330 Sum_probs=229.3
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
....++|.+|.| +++|.+|++++.|..++|||..++.. +.++..++-.|..++|......++.+
T Consensus 11 ~~~~~~i~sl~f---s~~G~~litss~dDsl~LYd~~~g~~-------------~~ti~skkyG~~~~~Fth~~~~~i~s 74 (311)
T KOG1446|consen 11 RETNGKINSLDF---SDDGLLLITSSEDDSLRLYDSLSGKQ-------------VKTINSKKYGVDLACFTHHSNTVIHS 74 (311)
T ss_pred ccCCCceeEEEe---cCCCCEEEEecCCCeEEEEEcCCCce-------------eeEeecccccccEEEEecCCceEEEc
Confidence 335778999999 99999999999999999999987744 66777777889999998877777766
Q ss_pred eC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 127 SG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 127 ~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+. |.+|+.-++.+.+.++.+.||...|++|+.+|-+ ..+++++.|++|++||++..++.....
T Consensus 75 Stk~d~tIryLsl~dNkylRYF~GH~~~V~sL~~sP~~-d~FlS~S~D~tvrLWDlR~~~cqg~l~-------------- 139 (311)
T KOG1446|consen 75 STKEDDTIRYLSLHDNKYLRYFPGHKKRVNSLSVSPKD-DTFLSSSLDKTVRLWDLRVKKCQGLLN-------------- 139 (311)
T ss_pred cCCCCCceEEEEeecCceEEEcCCCCceEEEEEecCCC-CeEEecccCCeEEeeEecCCCCceEEe--------------
Confidence 66 8999999999999999999999999999999988 899999999999999999766543221
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc-eecccCCCccccccccccccCeeEEEeC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA-QITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
...-..++|.|+|-.++++. ....|++||++.... +..... .........+.|.|+
T Consensus 140 ---------------~~~~pi~AfDp~GLifA~~~-~~~~IkLyD~Rs~dkgPF~tf~-------i~~~~~~ew~~l~FS 196 (311)
T KOG1446|consen 140 ---------------LSGRPIAAFDPEGLIFALAN-GSELIKLYDLRSFDKGPFTTFS-------ITDNDEAEWTDLEFS 196 (311)
T ss_pred ---------------cCCCcceeECCCCcEEEEec-CCCeEEEEEecccCCCCceeEc-------cCCCCccceeeeEEc
Confidence 12344678999998888755 345999999997532 221110 111334568899999
Q ss_pred CCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceece-eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-
Q 010390 284 SNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIES-FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS- 361 (512)
Q Consensus 284 ~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~- 361 (512)
|||++|+.+...+.+++.|.-.+. ....+..+.... .....+|+||++++++|+.||+|++|+++++... ..+.+
T Consensus 197 ~dGK~iLlsT~~s~~~~lDAf~G~--~~~tfs~~~~~~~~~~~a~ftPds~Fvl~gs~dg~i~vw~~~tg~~v-~~~~~~ 273 (311)
T KOG1446|consen 197 PDGKSILLSTNASFIYLLDAFDGT--VKSTFSGYPNAGNLPLSATFTPDSKFVLSGSDDGTIHVWNLETGKKV-AVLRGP 273 (311)
T ss_pred CCCCEEEEEeCCCcEEEEEccCCc--EeeeEeeccCCCCcceeEEECCCCcEEEEecCCCcEEEEEcCCCcEe-eEecCC
Confidence 999999999999999999976654 444444443332 2256789999999999999999999999998875 45555
Q ss_pred ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+.+++.++.|+|.- .+++| .+..+.+|=....+
T Consensus 274 ~~~~~~~~~fnP~~-~mf~s--a~s~l~fw~p~~~~ 306 (311)
T KOG1446|consen 274 NGGPVSCVRFNPRY-AMFVS--ASSNLVFWLPDEDA 306 (311)
T ss_pred CCCCccccccCCce-eeeee--cCceEEEEeccccc
Confidence 78999999999965 44544 45678899766443
No 61
>KOG0276 consensus Vesicle coat complex COPI, beta' subunit [Intracellular trafficking, secretion, and vesicular transport]
Probab=100.00 E-value=2.4e-32 Score=246.91 Aligned_cols=277 Identities=17% Similarity=0.216 Sum_probs=237.4
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
.+.+..|...|.++.|+|...+++++-.+|.|.|||.++...+..+.-..-+|.+..|-+.. +.+++|++|..|++|+.
T Consensus 6 krk~~~rSdRVKsVd~HPtePw~la~LynG~V~IWnyetqtmVksfeV~~~PvRa~kfiaRk-nWiv~GsDD~~IrVfny 84 (794)
T KOG0276|consen 6 KRKFQSRSDRVKSVDFHPTEPWILAALYNGDVQIWNYETQTMVKSFEVSEVPVRAAKFIARK-NWIVTGSDDMQIRVFNY 84 (794)
T ss_pred hhHhhccCCceeeeecCCCCceEEEeeecCeeEEEecccceeeeeeeecccchhhheeeecc-ceEEEecCCceEEEEec
Confidence 34556699999999999999999999999999999999999999998888899999999977 89999999999999999
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~ 260 (512)
++.+... .+.+|...|.+++.||...+++++ ++|-.|++||.+..-....
T Consensus 85 nt~ekV~---------------------------~FeAH~DyIR~iavHPt~P~vLts-SDDm~iKlW~we~~wa~~q-- 134 (794)
T KOG0276|consen 85 NTGEKVK---------------------------TFEAHSDYIRSIAVHPTLPYVLTS-SDDMTIKLWDWENEWACEQ-- 134 (794)
T ss_pred ccceeeE---------------------------EeeccccceeeeeecCCCCeEEec-CCccEEEEeeccCceeeee--
Confidence 9776544 677899999999999999999985 4899999999987544332
Q ss_pred CCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC--CCEEEE
Q 010390 261 WPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--ASHILS 337 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~ 337 (512)
.+++|.+-|.+++|.| |.+.+++++.|++|++|.+.. ..+..++.+|. ..+.++.|-+. ..+|++
T Consensus 135 --------tfeGH~HyVMqv~fnPkD~ntFaS~sLDrTVKVWslgs--~~~nfTl~gHe--kGVN~Vdyy~~gdkpylIs 202 (794)
T KOG0276|consen 135 --------TFEGHEHYVMQVAFNPKDPNTFASASLDRTVKVWSLGS--PHPNFTLEGHE--KGVNCVDYYTGGDKPYLIS 202 (794)
T ss_pred --------EEcCcceEEEEEEecCCCccceeeeeccccEEEEEcCC--CCCceeeeccc--cCcceEEeccCCCcceEEe
Confidence 6899999999999999 567999999999999999865 55677777775 44777888764 469999
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccc
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPST 417 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (512)
|++|.+|+|||.++..+ +.++.||...|..+.|+|.- .+++|||.||+++||+-.+-+...++ .....++|++...
T Consensus 203 gaDD~tiKvWDyQtk~C-V~TLeGHt~Nvs~v~fhp~l-piiisgsEDGTvriWhs~Ty~lE~tL--n~gleRvW~I~~~ 278 (794)
T KOG0276|consen 203 GADDLTIKVWDYQTKSC-VQTLEGHTNNVSFVFFHPEL-PIIISGSEDGTVRIWNSKTYKLEKTL--NYGLERVWCIAAH 278 (794)
T ss_pred cCCCceEEEeecchHHH-HHHhhcccccceEEEecCCC-cEEEEecCCccEEEecCcceehhhhh--hcCCceEEEEeec
Confidence 99999999999999887 58999999999999999998 69999999999999999988877763 3345678887755
Q ss_pred hhccccc
Q 010390 418 ECRKLFM 424 (512)
Q Consensus 418 ~~~~~~~ 424 (512)
.....++
T Consensus 279 k~~~~i~ 285 (794)
T KOG0276|consen 279 KGDGKIA 285 (794)
T ss_pred CCCCeEE
Confidence 5444443
No 62
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=100.00 E-value=1.3e-31 Score=257.86 Aligned_cols=312 Identities=18% Similarity=0.227 Sum_probs=242.1
Q ss_pred cCCcceEEEEEecCCCcEEEEee--CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSD--EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
+..|++|.. +|||..+|||+ .||.++||+.+.-.........+ -.+.+.+...|.+.|+|+.|+|||++||+|+
T Consensus 13 ~~~IfSIdv---~pdg~~~aTgGq~~d~~~~iW~~~~vl~~~~~~~~~-l~k~l~~m~~h~~sv~CVR~S~dG~~lAsGS 88 (942)
T KOG0973|consen 13 EKSIFSIDV---HPDGVKFATGGQVLDGGIVIWSQDPVLDEKEEKNEN-LPKHLCTMDDHDGSVNCVRFSPDGSYLASGS 88 (942)
T ss_pred CeeEEEEEe---cCCceeEecCCccccccceeeccccccchhhhhhcc-cchhheeeccccCceeEEEECCCCCeEeecc
Confidence 456899999 99999999999 99999999975432222111111 2355777889999999999999999999999
Q ss_pred CCCcEEEEeCCC------------------CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390 128 GDQTIKIWDAEK------------------KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 128 ~dg~i~iwd~~~------------------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 189 (512)
+|+.|.||+... .+++..+.+|...|..++|+|++ .+|++++.|++|.+||..+.+.
T Consensus 89 DD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~Dv~Wsp~~-~~lvS~s~DnsViiwn~~tF~~---- 163 (942)
T KOG0973|consen 89 DDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLDVNWSPDD-SLLVSVSLDNSVIIWNAKTFEL---- 163 (942)
T ss_pred CcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccceeccCCCc-cEEEEecccceEEEEcccccee----
Confidence 999999998762 13567789999999999999987 9999999999999999986543
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
...+.+|.+.|..+.|.|-|+++++-+ .|++|++|++.+.........+..
T Consensus 164 -----------------------~~vl~~H~s~VKGvs~DP~Gky~ASqs-dDrtikvwrt~dw~i~k~It~pf~----- 214 (942)
T KOG0973|consen 164 -----------------------LKVLRGHQSLVKGVSWDPIGKYFASQS-DDRTLKVWRTSDWGIEKSITKPFE----- 214 (942)
T ss_pred -----------------------eeeeecccccccceEECCccCeeeeec-CCceEEEEEcccceeeEeeccchh-----
Confidence 336778999999999999999999866 799999999887555544333321
Q ss_pred ccccccCeeEEEeCCCCCEEEEEec----CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-------------C
Q 010390 270 KETRLHGISSLSQDSNGVFLTASCM----DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-------------A 332 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~----dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-------------~ 332 (512)
......-+..+.|+|||.+|++... -.++.|.+-.+ ...-..+-+|. ..+.++.|+|. .
T Consensus 215 ~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~t--Wk~~~~LvGH~--~p~evvrFnP~lfe~~~~ng~~~~~ 290 (942)
T KOG0973|consen 215 ESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGT--WKVDKDLVGHS--APVEVVRFNPKLFERNNKNGTSTQP 290 (942)
T ss_pred hCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCC--ceeeeeeecCC--CceEEEEeChHHhccccccCCccCC
Confidence 2223345889999999999998753 23677776432 33344556665 35777888871 1
Q ss_pred C----EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390 333 S----HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP 404 (512)
Q Consensus 333 ~----~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 404 (512)
+ .+|+|+.|++|-||.....+.......-....|.+++|+||| ..|+.+|.||+|.+..++..+.-.....
T Consensus 291 ~~~y~i~AvgSqDrSlSVW~T~~~RPl~vi~~lf~~SI~DmsWspdG-~~LfacS~DGtV~~i~Fee~ElG~~ls~ 365 (942)
T KOG0973|consen 291 NCYYCIAAVGSQDRSLSVWNTALPRPLFVIHNLFNKSIVDMSWSPDG-FSLFACSLDGTVALIHFEEKELGVALSE 365 (942)
T ss_pred CcceEEEEEecCCccEEEEecCCCCchhhhhhhhcCceeeeeEcCCC-CeEEEEecCCeEEEEEcchHHhCcccCh
Confidence 1 578999999999999976665433333346789999999999 8999999999999999998776655443
No 63
>cd00200 WD40 WD40 domain, found in a number of eukaryotic proteins that cover a wide variety of functions including adaptor/regulatory modules in signal transduction, pre-mRNA processing and cytoskeleton assembly; typically contains a GH dipeptide 11-24 residues from its N-terminus and the WD dipeptide at its C-terminus and is 40 residues long, hence the name WD40; between GH and WD lies a conserved core; serves as a stable propeller-like platform to which proteins can bind either stably or reversibly; forms a propeller-like structure with several blades where each blade is composed of a four-stranded anti-parallel b-sheet; instances with few detectable copies are hypothesized to form larger structures by dimerization; each WD40 sequence repeat forms the first three strands of one blade and the last strand in the next blade; the last C-terminal WD40 repeat completes the blade structure of the first WD40 repeat to create the closed ring propeller-structure; residues on the top and botto
Probab=100.00 E-value=2.5e-30 Score=236.71 Aligned_cols=256 Identities=23% Similarity=0.435 Sum_probs=211.9
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
+.++++|.+.|++++|+|++++|++++.||.|++|++.+++....+..|...+..+.|+|++ ..+++++.||.|++||+
T Consensus 2 ~~~~~~h~~~i~~~~~~~~~~~l~~~~~~g~i~i~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~~~~i~i~~~ 80 (289)
T cd00200 2 RRTLKGHTGGVTCVAFSPDGKLLATGSGDGTIKVWDLETGELLRTLKGHTGPVRDVAASADG-TYLASGSSDKTIRLWDL 80 (289)
T ss_pred chHhcccCCCEEEEEEcCCCCEEEEeecCcEEEEEEeeCCCcEEEEecCCcceeEEEECCCC-CEEEEEcCCCeEEEEEc
Confidence 45577999999999999999999999999999999999988888888899999999999987 89999999999999999
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~ 260 (512)
..++... .+..|...+.++.|++++..+++ ++.++.|.+||+++.+...
T Consensus 81 ~~~~~~~---------------------------~~~~~~~~i~~~~~~~~~~~~~~-~~~~~~i~~~~~~~~~~~~--- 129 (289)
T cd00200 81 ETGECVR---------------------------TLTGHTSYVSSVAFSPDGRILSS-SSRDKTIKVWDVETGKCLT--- 129 (289)
T ss_pred CcccceE---------------------------EEeccCCcEEEEEEcCCCCEEEE-ecCCCeEEEEECCCcEEEE---
Confidence 8653222 33456678999999999766665 5469999999999766544
Q ss_pred CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS 340 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~ 340 (512)
....|...+.++.|+|++.++++++.++.|++||++... ....+..+ ...+.+++|+|+++.+++++.
T Consensus 130 --------~~~~~~~~i~~~~~~~~~~~l~~~~~~~~i~i~d~~~~~--~~~~~~~~--~~~i~~~~~~~~~~~l~~~~~ 197 (289)
T cd00200 130 --------TLRGHTDWVNSVAFSPDGTFVASSSQDGTIKLWDLRTGK--CVATLTGH--TGEVNSVAFSPDGEKLLSSSS 197 (289)
T ss_pred --------EeccCCCcEEEEEEcCcCCEEEEEcCCCcEEEEEccccc--cceeEecC--ccccceEEECCCcCEEEEecC
Confidence 234566789999999999999988889999999987533 33333333 345778999999999999999
Q ss_pred CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
++.|++||+...+. ...+..|...|.+++|+|++ .++++++.||.|++||+.+++....+
T Consensus 198 ~~~i~i~d~~~~~~-~~~~~~~~~~i~~~~~~~~~-~~~~~~~~~~~i~i~~~~~~~~~~~~ 257 (289)
T cd00200 198 DGTIKLWDLSTGKC-LGTLRGHENGVNSVAFSPDG-YLLASGSEDGTIRVWDLRTGECVQTL 257 (289)
T ss_pred CCcEEEEECCCCce-ecchhhcCCceEEEEEcCCC-cEEEEEcCCCcEEEEEcCCceeEEEc
Confidence 99999999987655 35566888899999999997 88888888999999999987765543
No 64
>KOG0296 consensus Angio-associated migratory cell protein (contains WD40 repeats) [Function unknown]
Probab=100.00 E-value=4e-31 Score=224.27 Aligned_cols=281 Identities=14% Similarity=0.205 Sum_probs=219.7
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
+..|..|+..|.+++.+|+.++++||+.|..-.+|++.++.....+.+|+..|+++.|+.++ .+||||+.+|.|+||+.
T Consensus 57 ~~tF~~H~~svFavsl~P~~~l~aTGGgDD~AflW~~~~ge~~~eltgHKDSVt~~~Fshdg-tlLATGdmsG~v~v~~~ 135 (399)
T KOG0296|consen 57 LVTFDKHTDSVFAVSLHPNNNLVATGGGDDLAFLWDISTGEFAGELTGHKDSVTCCSFSHDG-TLLATGDMSGKVLVFKV 135 (399)
T ss_pred eeehhhcCCceEEEEeCCCCceEEecCCCceEEEEEccCCcceeEecCCCCceEEEEEccCc-eEEEecCCCccEEEEEc
Confidence 67889999999999999999999999999999999999999999999999999999999998 99999999999999999
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA 260 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~ 260 (512)
.++...... ...-..+.=+.|+|.+..+++ |+.||.+.+|.+.+.....
T Consensus 136 stg~~~~~~---------------------------~~e~~dieWl~WHp~a~illA-G~~DGsvWmw~ip~~~~~k--- 184 (399)
T KOG0296|consen 136 STGGEQWKL---------------------------DQEVEDIEWLKWHPRAHILLA-GSTDGSVWMWQIPSQALCK--- 184 (399)
T ss_pred ccCceEEEe---------------------------ecccCceEEEEecccccEEEe-ecCCCcEEEEECCCcceee---
Confidence 877643322 122346777889997776665 8899999999999863332
Q ss_pred CCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee---------------------ce-
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG---------------------CR- 318 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~---------------------~~- 318 (512)
.+.+|..++++=.|.|+|+.++++..||+|++||..+... +..+.+ ..
T Consensus 185 --------v~~Gh~~~ct~G~f~pdGKr~~tgy~dgti~~Wn~ktg~p--~~~~~~~e~~~~~~~~~~~~~~~~~~g~~e 254 (399)
T KOG0296|consen 185 --------VMSGHNSPCTCGEFIPDGKRILTGYDDGTIIVWNPKTGQP--LHKITQAEGLELPCISLNLAGSTLTKGNSE 254 (399)
T ss_pred --------EecCCCCCcccccccCCCceEEEEecCceEEEEecCCCce--eEEecccccCcCCccccccccceeEeccCC
Confidence 4778889999999999999999999999999999866422 221110 00
Q ss_pred ---------------------------ecee---EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390 319 ---------------------------IESF---YVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA 368 (512)
Q Consensus 319 ---------------------------~~~~---~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 368 (512)
.+.. +-.+.++..-.+.|+|+-||+|.|||+..... +..-.|...|+.
T Consensus 255 ~~~~~~~~~sgKVv~~~n~~~~~l~~~~e~~~esve~~~~ss~lpL~A~G~vdG~i~iyD~a~~~~--R~~c~he~~V~~ 332 (399)
T KOG0296|consen 255 GVACGVNNGSGKVVNCNNGTVPELKPSQEELDESVESIPSSSKLPLAACGSVDGTIAIYDLAASTL--RHICEHEDGVTK 332 (399)
T ss_pred ccEEEEccccceEEEecCCCCccccccchhhhhhhhhcccccccchhhcccccceEEEEecccchh--heeccCCCceEE
Confidence 0000 00122333445778999999999999987654 455679999999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccC
Q 010390 369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQI 448 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~ 448 (512)
+.|-+ . .+|++++.||.|+.||.++|+++.++.- +...+- +++++|+.+++..
T Consensus 333 l~w~~-t-~~l~t~c~~g~v~~wDaRtG~l~~~y~G------------------------H~~~Il-~f~ls~~~~~vvT 385 (399)
T KOG0296|consen 333 LKWLN-T-DYLLTACANGKVRQWDARTGQLKFTYTG------------------------HQMGIL-DFALSPQKRLVVT 385 (399)
T ss_pred EEEcC-c-chheeeccCceEEeeeccccceEEEEec------------------------Cchhee-EEEEcCCCcEEEE
Confidence 99999 4 6999999999999999999998775332 222222 6777777777665
Q ss_pred CCCC
Q 010390 449 NSSD 452 (512)
Q Consensus 449 ~~~~ 452 (512)
.+..
T Consensus 386 ~s~D 389 (399)
T KOG0296|consen 386 VSDD 389 (399)
T ss_pred ecCC
Confidence 5443
No 65
>PTZ00421 coronin; Provisional
Probab=100.00 E-value=3.7e-30 Score=245.04 Aligned_cols=291 Identities=14% Similarity=0.146 Sum_probs=206.1
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKK 140 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~ 140 (512)
++|+..+++++.+.....|+...+..................+.+|.+.|++++|+| ++++|++|+.|++|+|||+.++
T Consensus 29 ~~d~~~~~~~n~~~~a~~w~~~gg~~v~~~~~~G~~~~~~~~l~GH~~~V~~v~fsP~d~~~LaSgS~DgtIkIWdi~~~ 108 (493)
T PTZ00421 29 LWDCSNTIACNDRFIAVPWQQLGSTAVLKHTDYGKLASNPPILLGQEGPIIDVAFNPFDPQKLFTASEDGTIMGWGIPEE 108 (493)
T ss_pred cCCCCCcEeECCceEEEEEecCCceEEeeccccccCCCCCceEeCCCCCEEEEEEcCCCCCEEEEEeCCCEEEEEecCCC
Confidence 677666777777777778876554321111000000011234679999999999999 8899999999999999999765
Q ss_pred -------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390 141 -------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV 213 (512)
Q Consensus 141 -------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (512)
+++..+.+|...|.+++|+|.+.++|++++.|++|++||++++...
T Consensus 109 ~~~~~~~~~l~~L~gH~~~V~~l~f~P~~~~iLaSgs~DgtVrIWDl~tg~~~--------------------------- 161 (493)
T PTZ00421 109 GLTQNISDPIVHLQGHTKKVGIVSFHPSAMNVLASAGADMVVNVWDVERGKAV--------------------------- 161 (493)
T ss_pred ccccccCcceEEecCCCCcEEEEEeCcCCCCEEEEEeCCCEEEEEECCCCeEE---------------------------
Confidence 3466788999999999999987689999999999999999865422
Q ss_pred eecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-eeEEEeCCCCCEEEEE
Q 010390 214 SRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG-ISSLSQDSNGVFLTAS 292 (512)
Q Consensus 214 ~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~ 292 (512)
..+..|...|.+++|+|++..+++ ++.|+.|++||+++++.... ...|... +..+.|.+++..++++
T Consensus 162 ~~l~~h~~~V~sla~spdG~lLat-gs~Dg~IrIwD~rsg~~v~t-----------l~~H~~~~~~~~~w~~~~~~ivt~ 229 (493)
T PTZ00421 162 EVIKCHSDQITSLEWNLDGSLLCT-TSKDKKLNIIDPRDGTIVSS-----------VEAHASAKSQRCLWAKRKDLIITL 229 (493)
T ss_pred EEEcCCCCceEEEEEECCCCEEEE-ecCCCEEEEEECCCCcEEEE-----------EecCCCCcceEEEEcCCCCeEEEE
Confidence 234567889999999999998887 45899999999998776542 3344433 4467788887777765
Q ss_pred e----cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec-CCCCEEEEecCCCCCCCceeccccCCeE
Q 010390 293 C----MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS-SDGNAYVWQVNKPQADPIKLKSHDGEVT 367 (512)
Q Consensus 293 ~----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 367 (512)
+ .|+.|++||+++... +......+ ....+....|++++++|++|+ .|+.|++||+.++.........+..++.
T Consensus 230 G~s~s~Dr~VklWDlr~~~~-p~~~~~~d-~~~~~~~~~~d~d~~~L~lggkgDg~Iriwdl~~~~~~~~~~~~s~~~~~ 307 (493)
T PTZ00421 230 GCSKSQQRQIMLWDTRKMAS-PYSTVDLD-QSSALFIPFFDEDTNLLYIGSKGEGNIRCFELMNERLTFCSSYSSVEPHK 307 (493)
T ss_pred ecCCCCCCeEEEEeCCCCCC-ceeEeccC-CCCceEEEEEcCCCCEEEEEEeCCCeEEEEEeeCCceEEEeeccCCCCCc
Confidence 4 478999999976543 22222211 123344567999999998887 5999999999987653222233556788
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 368 AVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
+++|.|.. .+=...--..|++.+...
T Consensus 308 g~~~~pk~---~~dv~~~Ei~r~~~l~~~ 333 (493)
T PTZ00421 308 GLCMMPKW---SLDTRKCEIARFYALTYH 333 (493)
T ss_pred ceEecccc---cccccceeeeEEEEecCC
Confidence 99999854 122222234567776543
No 66
>KOG0293 consensus WD40 repeat-containing protein [Function unknown]
Probab=100.00 E-value=5.5e-31 Score=226.72 Aligned_cols=294 Identities=17% Similarity=0.213 Sum_probs=227.4
Q ss_pred ccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 98 KARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 98 ~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
.+..+.+..|.++|.-+.||++|++||+++.|.+..||++... +...++.+|..+|..+.|+|++ ++|++|+.|..
T Consensus 214 ~qt~qil~~htdEVWfl~FS~nGkyLAsaSkD~Taiiw~v~~d~~~kl~~tlvgh~~~V~yi~wSPDd-ryLlaCg~~e~ 292 (519)
T KOG0293|consen 214 SQTWQILQDHTDEVWFLQFSHNGKYLASASKDSTAIIWIVVYDVHFKLKKTLVGHSQPVSYIMWSPDD-RYLLACGFDEV 292 (519)
T ss_pred chhhhhHhhCCCcEEEEEEcCCCeeEeeccCCceEEEEEEecCcceeeeeeeecccCceEEEEECCCC-CeEEecCchHh
Confidence 3446778899999999999999999999999999999997654 4478889999999999999998 89999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
+.+||+.++........ ++...+.+++|.||+..+++ |+.|+.+..||++...
T Consensus 293 ~~lwDv~tgd~~~~y~~--------------------------~~~~S~~sc~W~pDg~~~V~-Gs~dr~i~~wdlDgn~ 345 (519)
T KOG0293|consen 293 LSLWDVDTGDLRHLYPS--------------------------GLGFSVSSCAWCPDGFRFVT-GSPDRTIIMWDLDGNI 345 (519)
T ss_pred eeeccCCcchhhhhccc--------------------------CcCCCcceeEEccCCceeEe-cCCCCcEEEecCCcch
Confidence 99999998876543311 23568999999999999887 7789999999998654
Q ss_pred ceecccCCCccccccccc-cccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 255 AQITQAWPHAESSSAKET-RLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
... .++ ....|.+++..+||+++++.+.|..|++|+........+. .....+++++.|.+++
T Consensus 346 ~~~------------W~gvr~~~v~dlait~Dgk~vl~v~~d~~i~l~~~e~~~dr~li-----se~~~its~~iS~d~k 408 (519)
T KOG0293|consen 346 LGN------------WEGVRDPKVHDLAITYDGKYVLLVTVDKKIRLYNREARVDRGLI-----SEEQPITSFSISKDGK 408 (519)
T ss_pred hhc------------ccccccceeEEEEEcCCCcEEEEEecccceeeechhhhhhhccc-----cccCceeEEEEcCCCc
Confidence 321 111 1145899999999999999999999999998653322111 1234688899999999
Q ss_pred EEEEecCCCCEEEEecCCCCCCCceeccccCC--eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcccccee
Q 010390 334 HILSGSSDGNAYVWQVNKPQADPIKLKSHDGE--VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRV 411 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~--v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 411 (512)
++++.-.+..|++||+..... +..+.||... |..-+|--....++++||+|+.|+||+..+|+.+.++.-
T Consensus 409 ~~LvnL~~qei~LWDl~e~~l-v~kY~Ghkq~~fiIrSCFgg~~~~fiaSGSED~kvyIWhr~sgkll~~LsG------- 480 (519)
T KOG0293|consen 409 LALVNLQDQEIHLWDLEENKL-VRKYFGHKQGHFIIRSCFGGGNDKFIASGSEDSKVYIWHRISGKLLAVLSG------- 480 (519)
T ss_pred EEEEEcccCeeEEeecchhhH-HHHhhcccccceEEEeccCCCCcceEEecCCCceEEEEEccCCceeEeecC-------
Confidence 999999999999999995544 5678888653 444456554447999999999999999999997775332
Q ss_pred eeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390 412 MAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP 462 (512)
Q Consensus 412 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 462 (512)
+--.++ .++|+|.+..+........++.+|...
T Consensus 481 -----------------Hs~~vN-cVswNP~~p~m~ASasDDgtIRIWg~~ 513 (519)
T KOG0293|consen 481 -----------------HSKTVN-CVSWNPADPEMFASASDDGTIRIWGPS 513 (519)
T ss_pred -----------------Ccceee-EEecCCCCHHHhhccCCCCeEEEecCC
Confidence 222333 667777776555555555555555543
No 67
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=100.00 E-value=3.3e-30 Score=213.32 Aligned_cols=280 Identities=15% Similarity=0.249 Sum_probs=215.8
Q ss_pred ccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 49 EETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 49 h~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
-++.|.+|+| || ...++++|+.||+||+|+++.... ..-+....|.++|.+++|+.||..+++|+
T Consensus 26 P~DsIS~l~F---SP~~~~~~~A~SWD~tVR~wevq~~g~-----------~~~ka~~~~~~PvL~v~WsddgskVf~g~ 91 (347)
T KOG0647|consen 26 PEDSISALAF---SPQADNLLAAGSWDGTVRIWEVQNSGQ-----------LVPKAQQSHDGPVLDVCWSDDGSKVFSGG 91 (347)
T ss_pred cccchheeEe---ccccCceEEecccCCceEEEEEecCCc-----------ccchhhhccCCCeEEEEEccCCceEEeec
Confidence 5677888888 88 556777999999999999986311 11244567999999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
.|+.+++||+.+++ ...+..|.++|.++.|-+... ..|++|+.|.+|++||.+....+.....
T Consensus 92 ~Dk~~k~wDL~S~Q-~~~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L--------------- 155 (347)
T KOG0647|consen 92 CDKQAKLWDLASGQ-VSQVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL--------------- 155 (347)
T ss_pred cCCceEEEEccCCC-eeeeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec---------------
Confidence 99999999999995 455677999999999987541 3899999999999999997765544322
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (512)
...+.++..- .-+++.+..+..|.+|+++++...... ........+.|++..++.
T Consensus 156 -------------PeRvYa~Dv~---~pm~vVata~r~i~vynL~n~~te~k~---------~~SpLk~Q~R~va~f~d~ 210 (347)
T KOG0647|consen 156 -------------PERVYAADVL---YPMAVVATAERHIAVYNLENPPTEFKR---------IESPLKWQTRCVACFQDK 210 (347)
T ss_pred -------------cceeeehhcc---CceeEEEecCCcEEEEEcCCCcchhhh---------hcCcccceeeEEEEEecC
Confidence 2234444332 223444557999999999876654432 122234568999999998
Q ss_pred CEEEEEecCCeEEEEEcccCCCCceEeeeecee-------ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRI-------ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~-------~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
...+.|+.+|.+.+..+.......-..+..|.. --.+..++|+|....|++++.||++.+||-+.... +...
T Consensus 211 ~~~alGsiEGrv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~hgtlvTaGsDGtf~FWDkdar~k-Lk~s 289 (347)
T KOG0647|consen 211 DGFALGSIEGRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVHGTLVTAGSDGTFSFWDKDARTK-LKTS 289 (347)
T ss_pred CceEeeeecceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeecccceEEEecCCceEEEecchhhhh-hhcc
Confidence 888999999999999997755555666666653 12466799999999999999999999999877665 4667
Q ss_pred ccccCCeEEEEeCCCCCCeEEE-EeCC
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVT-SSDD 385 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s-~~~d 385 (512)
..|..+|++..|+.+| .+++- .|.|
T Consensus 290 ~~~~qpItcc~fn~~G-~ifaYA~gYD 315 (347)
T KOG0647|consen 290 ETHPQPITCCSFNRNG-SIFAYALGYD 315 (347)
T ss_pred CcCCCccceeEecCCC-CEEEEEeecc
Confidence 7899999999999999 55554 3443
No 68
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.98 E-value=1.3e-30 Score=248.14 Aligned_cols=282 Identities=24% Similarity=0.406 Sum_probs=236.1
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceec-cccCCCcEEEEEEecCCCEEEEEe
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISD-WVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
|...+.+..+ . ..++++++.|.+|++||..++.. +.. +.+|.+.|.++++...+..|++|+
T Consensus 207 ~~~~~~~~q~---~--~~~~~~~s~~~tl~~~~~~~~~~-------------i~~~l~GH~g~V~~l~~~~~~~~lvsgS 268 (537)
T KOG0274|consen 207 DDHVVLCLQL---H--DGFFKSGSDDSTLHLWDLNNGYL-------------ILTRLVGHFGGVWGLAFPSGGDKLVSGS 268 (537)
T ss_pred Ccchhhhhee---e--cCeEEecCCCceeEEeecccceE-------------EEeeccCCCCCceeEEEecCCCEEEEEe
Confidence 4555677777 4 67899999999999999876632 444 999999999999987788999999
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.|.+++|||..+|++...+.+|...|.++...+ ..+++|+.|.+|++|++.++..+.
T Consensus 269 ~D~t~rvWd~~sg~C~~~l~gh~stv~~~~~~~---~~~~sgs~D~tVkVW~v~n~~~l~-------------------- 325 (537)
T KOG0274|consen 269 TDKTERVWDCSTGECTHSLQGHTSSVRCLTIDP---FLLVSGSRDNTVKVWDVTNGACLN-------------------- 325 (537)
T ss_pred cCCcEEeEecCCCcEEEEecCCCceEEEEEccC---ceEeeccCCceEEEEeccCcceEE--------------------
Confidence 999999999999999999999999999998764 679999999999999999665433
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
.+.+|..+|.++..+ +..++ +|+.|+.|++||+.+++++. .+.+|...|.++.+... .
T Consensus 326 -------l~~~h~~~V~~v~~~--~~~lv-sgs~d~~v~VW~~~~~~cl~-----------sl~gH~~~V~sl~~~~~-~ 383 (537)
T KOG0274|consen 326 -------LLRGHTGPVNCVQLD--EPLLV-SGSYDGTVKVWDPRTGKCLK-----------SLSGHTGRVYSLIVDSE-N 383 (537)
T ss_pred -------EeccccccEEEEEec--CCEEE-EEecCceEEEEEhhhceeee-----------eecCCcceEEEEEecCc-c
Confidence 445689999999998 44555 47789999999999888877 57889999999988766 8
Q ss_pred EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc-ccCCe
Q 010390 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS-HDGEV 366 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~-h~~~v 366 (512)
.+++|+.|+.|++||+++.. ..+..+.++... + ......+++|++++.|+.|++||...+++ ...+.+ |.+.|
T Consensus 384 ~~~Sgs~D~~IkvWdl~~~~-~c~~tl~~h~~~--v--~~l~~~~~~Lvs~~aD~~Ik~WD~~~~~~-~~~~~~~~~~~v 457 (537)
T KOG0274|consen 384 RLLSGSLDTTIKVWDLRTKR-KCIHTLQGHTSL--V--SSLLLRDNFLVSSSADGTIKLWDAEEGEC-LRTLEGRHVGGV 457 (537)
T ss_pred eEEeeeeccceEeecCCchh-hhhhhhcCCccc--c--cccccccceeEeccccccEEEeecccCce-eeeeccCCcccE
Confidence 99999999999999998753 456666665422 2 23445688999999999999999999887 466666 77899
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 367 TAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
..+++. . ..+++++.||.+++||+.++++.+..
T Consensus 458 ~~l~~~--~-~~il~s~~~~~~~l~dl~~~~~~~~l 490 (537)
T KOG0274|consen 458 SALALG--K-EEILCSSDDGSVKLWDLRSGTLIRTL 490 (537)
T ss_pred EEeecC--c-ceEEEEecCCeeEEEecccCchhhhh
Confidence 999987 2 68999999999999999999988754
No 69
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.98 E-value=3.3e-30 Score=223.36 Aligned_cols=283 Identities=20% Similarity=0.291 Sum_probs=233.4
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
+.++.. .|..+.+++|+.|..+.++|...++ .+..++||...|+.+.|+|+...+++++.|..|
T Consensus 222 i~ald~---~~s~~~ilTGG~d~~av~~d~~s~q-------------~l~~~~Gh~kki~~v~~~~~~~~v~~aSad~~i 285 (506)
T KOG0289|consen 222 ITALDI---IPSSSKILTGGEDKTAVLFDKPSNQ-------------ILATLKGHTKKITSVKFHKDLDTVITASADEII 285 (506)
T ss_pred eeEEee---cCCCCcceecCCCCceEEEecchhh-------------hhhhccCcceEEEEEEeccchhheeecCCcceE
Confidence 445554 6667899999999999999987663 488899999999999999999999999999999
Q ss_pred EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390 133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR 212 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (512)
+||......+......|..+|+.+..+|.+ .+|++++.||+..+.|++++........
T Consensus 286 ~vws~~~~s~~~~~~~h~~~V~~ls~h~tg-eYllsAs~d~~w~Fsd~~~g~~lt~vs~--------------------- 343 (506)
T KOG0289|consen 286 RVWSVPLSSEPTSSRPHEEPVTGLSLHPTG-EYLLSASNDGTWAFSDISSGSQLTVVSD--------------------- 343 (506)
T ss_pred EeeccccccCccccccccccceeeeeccCC-cEEEEecCCceEEEEEccCCcEEEEEee---------------------
Confidence 999999888888899999999999999998 9999999999999999998765432211
Q ss_pred ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390 213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS 292 (512)
Q Consensus 213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (512)
....-.+++.+|||||..+.+ |..||.|++||+.+..... .+.+|.++|..+.|+.+|.+|+++
T Consensus 344 ----~~s~v~~ts~~fHpDgLifgt-gt~d~~vkiwdlks~~~~a-----------~Fpght~~vk~i~FsENGY~Lat~ 407 (506)
T KOG0289|consen 344 ----ETSDVEYTSAAFHPDGLIFGT-GTPDGVVKIWDLKSQTNVA-----------KFPGHTGPVKAISFSENGYWLATA 407 (506)
T ss_pred ----ccccceeEEeeEcCCceEEec-cCCCceEEEEEcCCccccc-----------cCCCCCCceeEEEeccCceEEEEE
Confidence 122346899999999987766 7899999999999887554 477799999999999999999999
Q ss_pred ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC-CCCceeccccCCeEEEEe
Q 010390 293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ-ADPIKLKSHDGEVTAVNW 371 (512)
Q Consensus 293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-~~~~~~~~h~~~v~~v~~ 371 (512)
+.|+.|++||++....-....+... ..+..+.|.+.|.+|+.++.|=.|++++-.+.. .....+..|.+..+++.|
T Consensus 408 add~~V~lwDLRKl~n~kt~~l~~~---~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~sg~st~v~F 484 (506)
T KOG0289|consen 408 ADDGSVKLWDLRKLKNFKTIQLDEK---KEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHSGLSTGVRF 484 (506)
T ss_pred ecCCeEEEEEehhhcccceeecccc---ccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcccccceeee
Confidence 9999999999987653333222222 146779999999999999877666666643322 224556778889999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEeC
Q 010390 372 CPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 372 ~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
.... ++++++|.|..++++.+
T Consensus 485 g~~a-q~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 485 GEHA-QYLASTSMDAILRLYAL 505 (506)
T ss_pred cccc-eEEeeccchhheEEeec
Confidence 9888 89999999999998764
No 70
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.98 E-value=1.5e-30 Score=229.01 Aligned_cols=248 Identities=22% Similarity=0.354 Sum_probs=209.5
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNIL 124 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~ 124 (512)
+.-+.+.|+++.| -.||++||+|+..|.|+|||.++. ..++.+.+|+.+|..+.|+| ++..|+
T Consensus 64 ~srFk~~v~s~~f---R~DG~LlaaGD~sG~V~vfD~k~r-------------~iLR~~~ah~apv~~~~f~~~d~t~l~ 127 (487)
T KOG0310|consen 64 FSRFKDVVYSVDF---RSDGRLLAAGDESGHVKVFDMKSR-------------VILRQLYAHQAPVHVTKFSPQDNTMLV 127 (487)
T ss_pred HHhhccceeEEEe---ecCCeEEEccCCcCcEEEeccccH-------------HHHHHHhhccCceeEEEecccCCeEEE
Confidence 4457889999999 789999999999999999996543 34888999999999999999 556677
Q ss_pred EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+|+.|+.+++||+.+......+.+|++.|.|.+|+|.++.+++||+.||.|++||++......
T Consensus 128 s~sDd~v~k~~d~s~a~v~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v----------------- 190 (487)
T KOG0310|consen 128 SGSDDKVVKYWDLSTAYVQAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV----------------- 190 (487)
T ss_pred ecCCCceEEEEEcCCcEEEEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee-----------------
Confidence 999999999999999988778999999999999999987899999999999999998653111
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
....|..+|.++.+.|.|..++++| ...|++||+.++..... ....|...|+|+.+..
T Consensus 191 ----------~elnhg~pVe~vl~lpsgs~iasAg--Gn~vkVWDl~~G~qll~----------~~~~H~KtVTcL~l~s 248 (487)
T KOG0310|consen 191 ----------VELNHGCPVESVLALPSGSLIASAG--GNSVKVWDLTTGGQLLT----------SMFNHNKTVTCLRLAS 248 (487)
T ss_pred ----------EEecCCCceeeEEEcCCCCEEEEcC--CCeEEEEEecCCceehh----------hhhcccceEEEEEeec
Confidence 2235778999999999999999987 57899999997766654 3445888999999999
Q ss_pred CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
++..|++++-|+.+++||+.+ .+...+......+.+++.+|+++.++.|..+|.+.+-+....+
T Consensus 249 ~~~rLlS~sLD~~VKVfd~t~-----~Kvv~s~~~~~pvLsiavs~dd~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 249 DSTRLLSGSLDRHVKVFDTTN-----YKVVHSWKYPGPVLSIAVSPDDQTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred CCceEeecccccceEEEEccc-----eEEEEeeecccceeeEEecCCCceEEEecccceeeeehhhccc
Confidence 999999999999999999644 3344455556779999999999999999999988776544433
No 71
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.98 E-value=6.3e-30 Score=223.46 Aligned_cols=303 Identities=16% Similarity=0.201 Sum_probs=234.1
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc----ccccceecc-ccCCCcEEEEEEe
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN----AEKARISDW-VAHQNAIFDLCWI 117 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~-~~h~~~V~~l~~s 117 (512)
+.....|.-+|.+|.. +||+++..+++.+|.|.=|++.++.........+ ....+...- ++|...|.+++.+
T Consensus 135 ~~~~~~H~~s~~~val---s~d~~~~fsask~g~i~kw~v~tgk~~~~i~~~~ev~k~~~~~~k~~r~~h~keil~~avS 211 (479)
T KOG0299|consen 135 FRVIGKHQLSVTSVAL---SPDDKRVFSASKDGTILKWDVLTGKKDRYIIERDEVLKSHGNPLKESRKGHVKEILTLAVS 211 (479)
T ss_pred ceeeccccCcceEEEe---eccccceeecCCCcceeeeehhcCcccccccccchhhhhccCCCCcccccccceeEEEEEc
Confidence 4556679999999999 9999999999999999999998876431111110 011112222 4899999999999
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 118 KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
+|+++|++|+.|..|.||+.++.+.+..+.+|.+.|.+++|-. +.+.+++++.|+.|++|++....
T Consensus 212 ~Dgkylatgg~d~~v~Iw~~~t~ehv~~~~ghr~~V~~L~fr~-gt~~lys~s~Drsvkvw~~~~~s------------- 277 (479)
T KOG0299|consen 212 SDGKYLATGGRDRHVQIWDCDTLEHVKVFKGHRGAVSSLAFRK-GTSELYSASADRSVKVWSIDQLS------------- 277 (479)
T ss_pred CCCcEEEecCCCceEEEecCcccchhhcccccccceeeeeeec-CccceeeeecCCceEEEehhHhH-------------
Confidence 9999999999999999999999999999999999999999976 44899999999999999998543
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
.+..+.+|...|.++....-++ ++++|+.|+++++|++...... .+.++.+.+
T Consensus 278 --------------~vetlyGHqd~v~~IdaL~reR-~vtVGgrDrT~rlwKi~eesql------------ifrg~~~si 330 (479)
T KOG0299|consen 278 --------------YVETLYGHQDGVLGIDALSRER-CVTVGGRDRTVRLWKIPEESQL------------IFRGGEGSI 330 (479)
T ss_pred --------------HHHHHhCCccceeeechhcccc-eEEeccccceeEEEecccccee------------eeeCCCCCe
Confidence 3336678999999998876655 4555779999999999654443 466677789
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-c---------eeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-C---------RIESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~---------~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
.|++|-. ...+++|+.+|.|.+|++... .++..... | ....++++++..|..+++++|+.+|.|++|
T Consensus 331 dcv~~In-~~HfvsGSdnG~IaLWs~~KK--kplf~~~~AHgv~~~~~~~~~~~Witsla~i~~sdL~asGS~~G~vrLW 407 (479)
T KOG0299|consen 331 DCVAFIN-DEHFVSGSDNGSIALWSLLKK--KPLFTSRLAHGVIPELDPVNGNFWITSLAVIPGSDLLASGSWSGCVRLW 407 (479)
T ss_pred eeEEEec-ccceeeccCCceEEEeeeccc--CceeEeeccccccCCccccccccceeeeEecccCceEEecCCCCceEEE
Confidence 9999974 457899999999999998653 33333221 1 111378999999999999999999999999
Q ss_pred ecCCCCCCCcee--ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 348 QVNKPQADPIKL--KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 348 ~~~~~~~~~~~~--~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.+..+-..+..+ ..-.+.|++++|+++|..+++..+....+--|-
T Consensus 408 ~i~~g~r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 408 KIEDGLRAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred EecCCccccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 998873322222 124678999999999943555556665554454
No 72
>KOG1446 consensus Histone H3 (Lys4) methyltransferase complex and RNA cleavage factor II complex, subunit SWD2 [RNA processing and modification; Chromatin structure and dynamics; Posttranslational modification, protein turnover, chaperones]
Probab=99.98 E-value=3.2e-29 Score=209.43 Aligned_cols=283 Identities=17% Similarity=0.272 Sum_probs=225.3
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC--CCcEEEE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR--DGSFAIW 178 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~--dg~i~vw 178 (512)
-+.+....+.|+++.|+++|.+|++++.|.+++|||..+++.+.++..++-.|..++|.... +.++.++. |.+|+.-
T Consensus 7 ak~f~~~~~~i~sl~fs~~G~~litss~dDsl~LYd~~~g~~~~ti~skkyG~~~~~Fth~~-~~~i~sStk~d~tIryL 85 (311)
T KOG1446|consen 7 AKVFRETNGKINSLDFSDDGLLLITSSEDDSLRLYDSLSGKQVKTINSKKYGVDLACFTHHS-NTVIHSSTKEDDTIRYL 85 (311)
T ss_pred ccccccCCCceeEEEecCCCCEEEEecCCCeEEEEEcCCCceeeEeecccccccEEEEecCC-ceEEEccCCCCCceEEE
Confidence 34455567899999999999999999999999999999999999999888889999998766 56666665 8899999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
++.+. +.++.+.+|...|.+++.+|-+..+++ ++.|++|++||++..++.-.
T Consensus 86 sl~dN---------------------------kylRYF~GH~~~V~sL~~sP~~d~FlS-~S~D~tvrLWDlR~~~cqg~ 137 (311)
T KOG1446|consen 86 SLHDN---------------------------KYLRYFPGHKKRVNSLSVSPKDDTFLS-SSLDKTVRLWDLRVKKCQGL 137 (311)
T ss_pred EeecC---------------------------ceEEEcCCCCceEEEEEecCCCCeEEe-cccCCeEEeeEecCCCCceE
Confidence 98854 455678899999999999999988887 55899999999997666432
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec-eeceeEEEEEECCCCCEEEE
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC-RIESFYVKSEICPNASHILS 337 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~-~~~~~~~~~~~s~~~~~l~~ 337 (512)
. +...-...+|+|.|-++|++...+.|++||++.....+...+.-. ........+.|||||++|+.
T Consensus 138 l-------------~~~~~pi~AfDp~GLifA~~~~~~~IkLyD~Rs~dkgPF~tf~i~~~~~~ew~~l~FS~dGK~iLl 204 (311)
T KOG1446|consen 138 L-------------NLSGRPIAAFDPEGLIFALANGSELIKLYDLRSFDKGPFTTFSITDNDEAEWTDLEFSPDGKSILL 204 (311)
T ss_pred E-------------ecCCCcceeECCCCcEEEEecCCCeEEEEEecccCCCCceeEccCCCCccceeeeEEcCCCCEEEE
Confidence 2 122344589999999999999888999999999888887776544 44556788999999999999
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCC---eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeee
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGE---VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAI 414 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~---v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 414 (512)
++..+.+++.|.-++.. ...+..+... -....|.||+ +++++|+.||+|.+|+++++..+..+... ....+.++
T Consensus 205 sT~~s~~~~lDAf~G~~-~~tfs~~~~~~~~~~~a~ftPds-~Fvl~gs~dg~i~vw~~~tg~~v~~~~~~-~~~~~~~~ 281 (311)
T KOG1446|consen 205 STNASFIYLLDAFDGTV-KSTFSGYPNAGNLPLSATFTPDS-KFVLSGSDDGTIHVWNLETGKKVAVLRGP-NGGPVSCV 281 (311)
T ss_pred EeCCCcEEEEEccCCcE-eeeEeeccCCCCcceeEEECCCC-cEEEEecCCCcEEEEEcCCCcEeeEecCC-CCCCcccc
Confidence 99999999999988875 4555555332 2567899999 89999999999999999999987765443 23334444
Q ss_pred ccchhcccccCCCC
Q 010390 415 PSTECRKLFMNGEP 428 (512)
Q Consensus 415 ~~~~~~~~~~~~~~ 428 (512)
.+.|.-.+++..+.
T Consensus 282 ~fnP~~~mf~sa~s 295 (311)
T KOG1446|consen 282 RFNPRYAMFVSASS 295 (311)
T ss_pred ccCCceeeeeecCc
Confidence 45554444444433
No 73
>PLN00181 protein SPA1-RELATED; Provisional
Probab=99.98 E-value=6.3e-30 Score=263.60 Aligned_cols=270 Identities=17% Similarity=0.257 Sum_probs=207.8
Q ss_pred CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----e----eeec
Q 010390 74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----K----CTGA 145 (512)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~----~~~~ 145 (512)
+|.+++|+........ ......+..|.+.|.+++|+|++++|++|+.|+.|+|||+... . ....
T Consensus 457 ~gl~~~~~~~~~~~~~--------~~~~~~~~~~~~~V~~i~fs~dg~~latgg~D~~I~iwd~~~~~~~~~~~~~~~~~ 528 (793)
T PLN00181 457 EGLCKYLSFSKLRVKA--------DLKQGDLLNSSNLVCAIGFDRDGEFFATAGVNKKIKIFECESIIKDGRDIHYPVVE 528 (793)
T ss_pred hhhhhhhcccceEEEE--------eeccccccCCCCcEEEEEECCCCCEEEEEeCCCEEEEEECCcccccccccccceEE
Confidence 6778888876543210 0112335569999999999999999999999999999997542 1 1222
Q ss_pred ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
+. +...|.+++|++....+|++++.||+|++||+.+++. ...+..|...|++
T Consensus 529 ~~-~~~~v~~l~~~~~~~~~las~~~Dg~v~lWd~~~~~~---------------------------~~~~~~H~~~V~~ 580 (793)
T PLN00181 529 LA-SRSKLSGICWNSYIKSQVASSNFEGVVQVWDVARSQL---------------------------VTEMKEHEKRVWS 580 (793)
T ss_pred ec-ccCceeeEEeccCCCCEEEEEeCCCeEEEEECCCCeE---------------------------EEEecCCCCCEEE
Confidence 33 3468999999987658999999999999999976432 2245578889999
Q ss_pred EEEee-cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-CCCCEEEEEecCCeEEEEEc
Q 010390 226 VLYLK-DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-SNGVFLTASCMDHRIYLYNV 303 (512)
Q Consensus 226 ~~~~~-~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l~~~~~dg~i~i~d~ 303 (512)
++|+| ++..+++ |+.|+.|++||++++..... .. ....+.++.|+ +++.+|++|+.||.|++||+
T Consensus 581 l~~~p~~~~~L~S-gs~Dg~v~iWd~~~~~~~~~-----------~~-~~~~v~~v~~~~~~g~~latgs~dg~I~iwD~ 647 (793)
T PLN00181 581 IDYSSADPTLLAS-GSDDGSVKLWSINQGVSIGT-----------IK-TKANICCVQFPSESGRSLAFGSADHKVYYYDL 647 (793)
T ss_pred EEEcCCCCCEEEE-EcCCCEEEEEECCCCcEEEE-----------Ee-cCCCeEEEEEeCCCCCEEEEEeCCCeEEEEEC
Confidence 99997 5566665 66899999999998765542 22 22468899995 57999999999999999999
Q ss_pred ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC-----CCCceeccccCCeEEEEeCCCCCCe
Q 010390 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ-----ADPIKLKSHDGEVTAVNWCPNEAGK 378 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~-----~~~~~~~~h~~~v~~v~~~~~~~~~ 378 (512)
+... .....+.+|. ..+..+.|. ++.+|++++.|+.|++||+.... ..+..+.+|...+.+++|++++ .+
T Consensus 648 ~~~~-~~~~~~~~h~--~~V~~v~f~-~~~~lvs~s~D~~ikiWd~~~~~~~~~~~~l~~~~gh~~~i~~v~~s~~~-~~ 722 (793)
T PLN00181 648 RNPK-LPLCTMIGHS--KTVSYVRFV-DSSTLVSSSTDNTLKLWDLSMSISGINETPLHSFMGHTNVKNFVGLSVSD-GY 722 (793)
T ss_pred CCCC-ccceEecCCC--CCEEEEEEe-CCCEEEEEECCCEEEEEeCCCCccccCCcceEEEcCCCCCeeEEEEcCCC-CE
Confidence 7642 2334444443 457788886 78899999999999999997531 2356788999999999999999 89
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 010390 379 IVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 379 l~s~~~dg~i~vwd~~~~~ 397 (512)
|++|+.|+.|++|+.....
T Consensus 723 lasgs~D~~v~iw~~~~~~ 741 (793)
T PLN00181 723 IATGSETNEVFVYHKAFPM 741 (793)
T ss_pred EEEEeCCCEEEEEECCCCC
Confidence 9999999999999987654
No 74
>KOG0310 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=4e-30 Score=226.36 Aligned_cols=287 Identities=16% Similarity=0.247 Sum_probs=232.3
Q ss_pred ccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 49 EETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
..++|.+++| ||... -+|+.+ .-.+.||+..+... ..++...+..|+++.|..||++|+.|+
T Consensus 25 e~~~vssl~f---sp~~P~d~aVt~-S~rvqly~~~~~~~-------------~k~~srFk~~v~s~~fR~DG~LlaaGD 87 (487)
T KOG0310|consen 25 EHNSVSSLCF---SPKHPYDFAVTS-SVRVQLYSSVTRSV-------------RKTFSRFKDVVYSVDFRSDGRLLAAGD 87 (487)
T ss_pred ccCcceeEec---CCCCCCceEEec-ccEEEEEecchhhh-------------hhhHHhhccceeEEEeecCCeEEEccC
Confidence 4577888888 65443 244444 34799999877643 455666778999999999999999999
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
..|.|+|+|..+...++.+.+|..+|..+.|+|+++..|++|++|+.+++||+.+...
T Consensus 88 ~sG~V~vfD~k~r~iLR~~~ah~apv~~~~f~~~d~t~l~s~sDd~v~k~~d~s~a~v---------------------- 145 (487)
T KOG0310|consen 88 ESGHVKVFDMKSRVILRQLYAHQAPVHVTKFSPQDNTMLVSGSDDKVVKYWDLSTAYV---------------------- 145 (487)
T ss_pred CcCcEEEeccccHHHHHHHhhccCceeEEEecccCCeEEEecCCCceEEEEEcCCcEE----------------------
Confidence 9999999998777788899999999999999999989999999999999999986542
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
...+.+|...|.|.+|+|....++++|+.||.|++||++...... ....|..+|..+.+-|.|.
T Consensus 146 -----~~~l~~htDYVR~g~~~~~~~hivvtGsYDg~vrl~DtR~~~~~v-----------~elnhg~pVe~vl~lpsgs 209 (487)
T KOG0310|consen 146 -----QAELSGHTDYVRCGDISPANDHIVVTGSYDGKVRLWDTRSLTSRV-----------VELNHGCPVESVLALPSGS 209 (487)
T ss_pred -----EEEecCCcceeEeeccccCCCeEEEecCCCceEEEEEeccCCcee-----------EEecCCCceeeEEEcCCCC
Confidence 225668999999999999999999999999999999999874322 3566778899999999999
Q ss_pred EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeE
Q 010390 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVT 367 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~ 367 (512)
.+++++ .+.|++||+..+........ . +...++|+.+..++..|++|+-|+.|++||+.+.+. ... ....++|.
T Consensus 210 ~iasAg-Gn~vkVWDl~~G~qll~~~~-~--H~KtVTcL~l~s~~~rLlS~sLD~~VKVfd~t~~Kv-v~s-~~~~~pvL 283 (487)
T KOG0310|consen 210 LIASAG-GNSVKVWDLTTGGQLLTSMF-N--HNKTVTCLRLASDSTRLLSGSLDRHVKVFDTTNYKV-VHS-WKYPGPVL 283 (487)
T ss_pred EEEEcC-CCeEEEEEecCCceehhhhh-c--ccceEEEEEeecCCceEeecccccceEEEEccceEE-EEe-eeccccee
Confidence 998885 56899999976543332222 2 345689999999999999999999999999766544 222 23568999
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 368 AVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+++.+|++ +.++.|..||.+.+=+...++
T Consensus 284 siavs~dd-~t~viGmsnGlv~~rr~~~k~ 312 (487)
T KOG0310|consen 284 SIAVSPDD-QTVVIGMSNGLVSIRRREVKK 312 (487)
T ss_pred eEEecCCC-ceEEEecccceeeeehhhccc
Confidence 99999998 899999999988877554443
No 75
>KOG0283 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.6e-30 Score=244.25 Aligned_cols=255 Identities=17% Similarity=0.243 Sum_probs=201.9
Q ss_pred ceeccc-cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC--------------------------------C------
Q 010390 100 RISDWV-AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK--------------------------------K------ 140 (512)
Q Consensus 100 ~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~--------------------------------~------ 140 (512)
..+.+. +|++.|+++.|++||+|||+||.|+.|+||.+.. .
T Consensus 258 ~~Qe~~~ah~gaIw~mKFS~DGKyLAsaGeD~virVWkVie~e~~~~~~~~~~~~~~~~~~~s~~~p~~s~~~~~~~~~s 337 (712)
T KOG0283|consen 258 VVQEISNAHKGAIWAMKFSHDGKYLASAGEDGVIRVWKVIESERMRVAEGDSSCMYFEYNANSQIEPSTSSEEKISSRTS 337 (712)
T ss_pred EeeccccccCCcEEEEEeCCCCceeeecCCCceEEEEEEeccchhcccccccchhhhhhhhccccCcccccccccccccc
Confidence 345556 8999999999999999999999999999998755 0
Q ss_pred ----------------------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 141 ----------------------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 141 ----------------------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
++++.+.+|.+.|..|.|+.+ ++|++++.|.+|++|++...+++..+
T Consensus 338 ~~~~~~~s~~~~~p~~~f~f~ekP~~ef~GHt~DILDlSWSKn--~fLLSSSMDKTVRLWh~~~~~CL~~F--------- 406 (712)
T KOG0283|consen 338 SSRKGSQSPCVLLPLKAFVFSEKPFCEFKGHTADILDLSWSKN--NFLLSSSMDKTVRLWHPGRKECLKVF--------- 406 (712)
T ss_pred ccccccCCccccCCCccccccccchhhhhccchhheecccccC--CeeEeccccccEEeecCCCcceeeEE---------
Confidence 034567889999999999974 69999999999999999987776544
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.|...|+|++|+|.+...+++|+-||.|+||++...+... ...-..-|+
T Consensus 407 -------------------~HndfVTcVaFnPvDDryFiSGSLD~KvRiWsI~d~~Vv~------------W~Dl~~lIT 455 (712)
T KOG0283|consen 407 -------------------SHNDFVTCVAFNPVDDRYFISGSLDGKVRLWSISDKKVVD------------WNDLRDLIT 455 (712)
T ss_pred -------------------ecCCeeEEEEecccCCCcEeecccccceEEeecCcCeeEe------------ehhhhhhhe
Confidence 7888999999999777777779999999999999877664 333335699
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---e-eceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCC
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---R-IESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~-~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~ 353 (512)
+++|.|||+..++|+.+|.+++|+........-..+..+ . ....|+.+.|.|.. ..+++.+.|..|+|||.++..
T Consensus 456 Avcy~PdGk~avIGt~~G~C~fY~t~~lk~~~~~~I~~~~~Kk~~~~rITG~Q~~p~~~~~vLVTSnDSrIRI~d~~~~~ 535 (712)
T KOG0283|consen 456 AVCYSPDGKGAVIGTFNGYCRFYDTEGLKLVSDFHIRLHNKKKKQGKRITGLQFFPGDPDEVLVTSNDSRIRIYDGRDKD 535 (712)
T ss_pred eEEeccCCceEEEEEeccEEEEEEccCCeEEEeeeEeeccCccccCceeeeeEecCCCCCeEEEecCCCceEEEeccchh
Confidence 999999999999999999999999866433222222211 1 11258889988753 357778889999999997665
Q ss_pred CCCceecccc--CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 354 ADPIKLKSHD--GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 354 ~~~~~~~~h~--~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
. +..+.|+. ..-....|+.|| ++|+++++|..|++|+++....
T Consensus 536 l-v~KfKG~~n~~SQ~~Asfs~Dg-k~IVs~seDs~VYiW~~~~~~~ 580 (712)
T KOG0283|consen 536 L-VHKFKGFRNTSSQISASFSSDG-KHIVSASEDSWVYIWKNDSFNS 580 (712)
T ss_pred h-hhhhcccccCCcceeeeEccCC-CEEEEeecCceEEEEeCCCCcc
Confidence 5 34555543 234566799999 9999999999999999866543
No 76
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.97 E-value=9.5e-30 Score=232.94 Aligned_cols=274 Identities=21% Similarity=0.324 Sum_probs=225.4
Q ss_pred ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 010390 61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK 140 (512)
Q Consensus 61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 140 (512)
|+ ..+.||+|. ...|++|+..++.. ..+.. .+.+.|+++.|+++|.+|++|..+|.|.|||..+.
T Consensus 185 Ws-s~n~laVal-g~~vylW~~~s~~v-----------~~l~~--~~~~~vtSv~ws~~G~~LavG~~~g~v~iwD~~~~ 249 (484)
T KOG0305|consen 185 WS-SANVLAVAL-GQSVYLWSASSGSV-----------TELCS--FGEELVTSVKWSPDGSHLAVGTSDGTVQIWDVKEQ 249 (484)
T ss_pred cc-cCCeEEEEe-cceEEEEecCCCce-----------EEeEe--cCCCceEEEEECCCCCEEEEeecCCeEEEEehhhc
Confidence 36 456788876 44899999887643 12222 23899999999999999999999999999999999
Q ss_pred eeeecccC-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390 141 KCTGALMG-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219 (512)
Q Consensus 141 ~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (512)
+.+..+.+ |...|-+++|.. ..+.+|+.|+.|..+|++..+.... .+.+|
T Consensus 250 k~~~~~~~~h~~rvg~laW~~---~~lssGsr~~~I~~~dvR~~~~~~~--------------------------~~~~H 300 (484)
T KOG0305|consen 250 KKTRTLRGSHASRVGSLAWNS---SVLSSGSRDGKILNHDVRISQHVVS--------------------------TLQGH 300 (484)
T ss_pred cccccccCCcCceeEEEeccC---ceEEEecCCCcEEEEEEecchhhhh--------------------------hhhcc
Confidence 99999998 999999999983 7899999999999999996653321 25688
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEe--cCC
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASC--MDH 296 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~--~dg 296 (512)
...|..+.|++++.++++ |+.|+.+.|||........ .+..|...|.+++|+|- ..+||+|+ .|+
T Consensus 301 ~qeVCgLkws~d~~~lAS-GgnDN~~~Iwd~~~~~p~~-----------~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~ 368 (484)
T KOG0305|consen 301 RQEVCGLKWSPDGNQLAS-GGNDNVVFIWDGLSPEPKF-----------TFTEHTAAVKALAWCPWQSGLLATGGGSADR 368 (484)
T ss_pred cceeeeeEECCCCCeecc-CCCccceEeccCCCccccE-----------EEeccceeeeEeeeCCCccCceEEcCCCccc
Confidence 999999999999999998 5589999999996555444 57889999999999994 55788765 789
Q ss_pred eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE--ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390 297 RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS--GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN 374 (512)
Q Consensus 297 ~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~--g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~ 374 (512)
.|++||..++. .+ ........|..+.|++..+-|++ |..++.|.||++.+.+. ...+.+|...|..++++||
T Consensus 369 ~i~fwn~~~g~--~i---~~vdtgsQVcsL~Wsk~~kEi~sthG~s~n~i~lw~~ps~~~-~~~l~gH~~RVl~la~SPd 442 (484)
T KOG0305|consen 369 CIKFWNTNTGA--RI---DSVDTGSQVCSLIWSKKYKELLSTHGYSENQITLWKYPSMKL-VAELLGHTSRVLYLALSPD 442 (484)
T ss_pred EEEEEEcCCCc--Ee---cccccCCceeeEEEcCCCCEEEEecCCCCCcEEEEeccccce-eeeecCCcceeEEEEECCC
Confidence 99999987532 22 22233456888999999877665 44577899999998655 5789999999999999999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCc
Q 010390 375 EAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 375 ~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+ ..+++|+.|.++++|++-+..
T Consensus 443 g-~~i~t~a~DETlrfw~~f~~~ 464 (484)
T KOG0305|consen 443 G-ETIVTGAADETLRFWNLFDER 464 (484)
T ss_pred C-CEEEEecccCcEEeccccCCC
Confidence 9 899999999999999998753
No 77
>KOG0313 consensus Microtubule binding protein YTM1 (contains WD40 repeats) [Cytoskeleton]
Probab=99.97 E-value=3.9e-30 Score=219.28 Aligned_cols=291 Identities=21% Similarity=0.283 Sum_probs=223.0
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC--CCeEEEEeCCCcEEEEeCCC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN--SDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~--~~~l~s~~~dg~i~vwd~~~ 182 (512)
..|.+.|.++.-. +++|++|++||.++|||. .|+++..+.+|.++|.+++|.-.+ ...|++++.|.++++|.++.
T Consensus 102 ~~hdDWVSsv~~~--~~~IltgsYDg~~riWd~-~Gk~~~~~~Ght~~ik~v~~v~~n~~~~~fvsas~Dqtl~Lw~~~~ 178 (423)
T KOG0313|consen 102 FLHDDWVSSVKGA--SKWILTGSYDGTSRIWDL-KGKSIKTIVGHTGPIKSVAWVIKNSSSCLFVSASMDQTLRLWKWNV 178 (423)
T ss_pred ccchhhhhhhccc--CceEEEeecCCeeEEEec-CCceEEEEecCCcceeeeEEEecCCccceEEEecCCceEEEEEecC
Confidence 3588899998876 789999999999999995 688899999999999988886544 13699999999999999987
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce------
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ------ 256 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~------ 256 (512)
++..... .....+|...|.++...+++..+++ |+.|..|++|+..+....
T Consensus 179 ~~~~~~~-----------------------~~~~~GHk~~V~sVsv~~sgtr~~S-gS~D~~lkiWs~~~~~~~~~E~~s 234 (423)
T KOG0313|consen 179 GENKVKA-----------------------LKVCRGHKRSVDSVSVDSSGTRFCS-GSWDTMLKIWSVETDEEDELESSS 234 (423)
T ss_pred chhhhhH-----------------------HhHhcccccceeEEEecCCCCeEEe-ecccceeeecccCCCccccccccc
Confidence 6644321 2233489999999999999998887 668999999993221100
Q ss_pred --------ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE
Q 010390 257 --------ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI 328 (512)
Q Consensus 257 --------~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (512)
.........+...+.+|..+|.++.|++ ...+++++.|.+|+.||+..+.. ...+.+ ...+.++.+
T Consensus 235 ~~rrk~~~~~~~~~~r~P~vtl~GHt~~Vs~V~w~d-~~v~yS~SwDHTIk~WDletg~~--~~~~~~---~ksl~~i~~ 308 (423)
T KOG0313|consen 235 NRRRKKQKREKEGGTRTPLVTLEGHTEPVSSVVWSD-ATVIYSVSWDHTIKVWDLETGGL--KSTLTT---NKSLNCISY 308 (423)
T ss_pred hhhhhhhhhhhcccccCceEEecccccceeeEEEcC-CCceEeecccceEEEEEeecccc--eeeeec---CcceeEeec
Confidence 0111112234457889999999999998 67899999999999999976432 222222 234678999
Q ss_pred CCCCCEEEEecCCCCEEEEecCCCC--CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc-ccccccCc
Q 010390 329 CPNASHILSGSSDGNAYVWQVNKPQ--ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR-CSSMRSPS 405 (512)
Q Consensus 329 s~~~~~l~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~-~~~~~~~~ 405 (512)
+|..++|++|+.|..|++||-+++. .....+.+|.+.|.++.|+|....+|++++.|+++++||+++.+ .+.. ..
T Consensus 309 ~~~~~Ll~~gssdr~irl~DPR~~~gs~v~~s~~gH~nwVssvkwsp~~~~~~~S~S~D~t~klWDvRS~k~plyd--I~ 386 (423)
T KOG0313|consen 309 SPLSKLLASGSSDRHIRLWDPRTGDGSVVSQSLIGHKNWVSSVKWSPTNEFQLVSGSYDNTVKLWDVRSTKAPLYD--IA 386 (423)
T ss_pred ccccceeeecCCCCceeecCCCCCCCceeEEeeecchhhhhheecCCCCceEEEEEecCCeEEEEEeccCCCccee--ec
Confidence 9999999999999999999998764 34467889999999999999998999999999999999999876 4433 22
Q ss_pred cccceeeeeccchhcccccCCCCcc
Q 010390 406 SVRRRVMAIPSTECRKLFMNGEPGW 430 (512)
Q Consensus 406 ~~~~~~~~~~~~~~~~~~~~~~~~~ 430 (512)
.+..++.++.+....-++..|.+..
T Consensus 387 ~h~DKvl~vdW~~~~~IvSGGaD~~ 411 (423)
T KOG0313|consen 387 GHNDKVLSVDWNEGGLIVSGGADNK 411 (423)
T ss_pred cCCceEEEEeccCCceEEeccCcce
Confidence 3345566666665544444444433
No 78
>PTZ00420 coronin; Provisional
Probab=99.97 E-value=3e-29 Score=239.64 Aligned_cols=251 Identities=16% Similarity=0.197 Sum_probs=186.6
Q ss_pred eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEEEEEeCCCcEEEEeCCCCe--------
Q 010390 71 SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNILTASGDQTIKIWDAEKKK-------- 141 (512)
Q Consensus 71 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~-------- 141 (512)
|+.+|.|++|+.... ..+..+.+|.+.|.+++|+|+ +.+|++|+.|++|+|||+.++.
T Consensus 50 GG~~gvI~L~~~~r~-------------~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~i~~ 116 (568)
T PTZ00420 50 GGLIGAIRLENQMRK-------------PPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKEIKD 116 (568)
T ss_pred CCceeEEEeeecCCC-------------ceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCcccccccc
Confidence 567889999997653 236778999999999999996 7899999999999999997642
Q ss_pred eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390 142 CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM 221 (512)
Q Consensus 142 ~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (512)
++..+.+|...|.+++|+|++..+|++++.|++|++||+++++... .+ .+..
T Consensus 117 p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~---------------------------~i-~~~~ 168 (568)
T PTZ00420 117 PQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAF---------------------------QI-NMPK 168 (568)
T ss_pred ceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEE---------------------------EE-ecCC
Confidence 3346788999999999999885677899999999999998764321 11 2345
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee-----EEEeCCCCCEEEEEecCC
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS-----SLSQDSNGVFLTASCMDH 296 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-----~~~~~~~~~~l~~~~~dg 296 (512)
.|.+++|+++|..+++++ .|+.|++||++++.... .+..|.+.+. ...|++++.+|++++.++
T Consensus 169 ~V~SlswspdG~lLat~s-~D~~IrIwD~Rsg~~i~-----------tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~ 236 (568)
T PTZ00420 169 KLSSLKWNIKGNLLSGTC-VGKHMHIIDPRKQEIAS-----------SFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSK 236 (568)
T ss_pred cEEEEEECCCCCEEEEEe-cCCEEEEEECCCCcEEE-----------EEecccCCceeEEEEeeeEcCCCCEEEEEEcCC
Confidence 799999999999887744 79999999999887654 2444544432 234568889999888764
Q ss_pred ----eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC
Q 010390 297 ----RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC 372 (512)
Q Consensus 297 ----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~ 372 (512)
.|++||++... .++...........+......+++.++++|+.|+.|++|++..+.........+..++.+++|.
T Consensus 237 ~~~R~VkLWDlr~~~-~pl~~~~ld~~~~~L~p~~D~~tg~l~lsGkGD~tIr~~e~~~~~~~~l~~~~s~~p~~g~~f~ 315 (568)
T PTZ00420 237 NNMREMKLWDLKNTT-SALVTMSIDNASAPLIPHYDESTGLIYLIGKGDGNCRYYQHSLGSIRKVNEYKSCSPFRSFGFL 315 (568)
T ss_pred CCccEEEEEECCCCC-CceEEEEecCCccceEEeeeCCCCCEEEEEECCCeEEEEEccCCcEEeecccccCCCccceEEc
Confidence 79999998643 2343333222222233333455688999999999999999987643211222356788999999
Q ss_pred CCC
Q 010390 373 PNE 375 (512)
Q Consensus 373 ~~~ 375 (512)
|+.
T Consensus 316 Pkr 318 (568)
T PTZ00420 316 PKQ 318 (568)
T ss_pred ccc
Confidence 975
No 79
>KOG1407 consensus WD40 repeat protein [Function unknown]
Probab=99.97 E-value=5.4e-30 Score=207.73 Aligned_cols=278 Identities=17% Similarity=0.284 Sum_probs=227.2
Q ss_pred eccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 102 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
+.+++|...|.+++|+.+|..|++|+.|+++.+|+++..+.... ..+|.+.|-.++|+|..+.+|++++.|.+|++||
T Consensus 14 r~~~~~~~~v~Sv~wn~~g~~lasgs~dktv~v~n~e~~r~~~~~~~~gh~~svdql~w~~~~~d~~atas~dk~ir~wd 93 (313)
T KOG1407|consen 14 RELQGHVQKVHSVAWNCDGTKLASGSFDKTVSVWNLERDRFRKELVYRGHTDSVDQLCWDPKHPDLFATASGDKTIRIWD 93 (313)
T ss_pred HHhhhhhhcceEEEEcccCceeeecccCCceEEEEecchhhhhhhcccCCCcchhhheeCCCCCcceEEecCCceEEEEE
Confidence 56789999999999999999999999999999999988755443 4789999999999999999999999999999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
++.+++...... ...-.-+.|+|+|.++++ +..|..|.+.|.++.+.....
T Consensus 94 ~r~~k~~~~i~~----------------------------~~eni~i~wsp~g~~~~~-~~kdD~it~id~r~~~~~~~~ 144 (313)
T KOG1407|consen 94 IRSGKCTARIET----------------------------KGENINITWSPDGEYIAV-GNKDDRITFIDARTYKIVNEE 144 (313)
T ss_pred eccCcEEEEeec----------------------------cCcceEEEEcCCCCEEEE-ecCcccEEEEEecccceeehh
Confidence 998776543211 223456789999999998 558999999999987766432
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
.....+..+.|+.++.+++.....|.|.|.... ..+++..+..|+ ....|+.|+|+|+++|+|+
T Consensus 145 ------------~~~~e~ne~~w~~~nd~Fflt~GlG~v~ILsyp--sLkpv~si~AH~--snCicI~f~p~GryfA~Gs 208 (313)
T KOG1407|consen 145 ------------QFKFEVNEISWNNSNDLFFLTNGLGCVEILSYP--SLKPVQSIKAHP--SNCICIEFDPDGRYFATGS 208 (313)
T ss_pred ------------cccceeeeeeecCCCCEEEEecCCceEEEEecc--ccccccccccCC--cceEEEEECCCCceEeecc
Confidence 223457788999888888888888999999875 456788888887 4467899999999999999
Q ss_pred CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchh
Q 010390 340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTEC 419 (512)
Q Consensus 340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (512)
.|..+.+||++..-+ .+.+..++-+|..+.|+.+| ++||++|+|-.|-|=++++|..+......
T Consensus 209 ADAlvSLWD~~ELiC-~R~isRldwpVRTlSFS~dg-~~lASaSEDh~IDIA~vetGd~~~eI~~~-------------- 272 (313)
T KOG1407|consen 209 ADALVSLWDVDELIC-ERCISRLDWPVRTLSFSHDG-RMLASASEDHFIDIAEVETGDRVWEIPCE-------------- 272 (313)
T ss_pred ccceeeccChhHhhh-heeeccccCceEEEEeccCc-ceeeccCccceEEeEecccCCeEEEeecc--------------
Confidence 999999999987655 46788899999999999999 99999999999999999999866542211
Q ss_pred cccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390 420 RKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD 452 (512)
Q Consensus 420 ~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 452 (512)
...+ .++|+|...+++.+-..
T Consensus 273 -------~~t~-----tVAWHPk~~LLAyA~dd 293 (313)
T KOG1407|consen 273 -------GPTF-----TVAWHPKRPLLAYACDD 293 (313)
T ss_pred -------CCce-----eEEecCCCceeeEEecC
Confidence 1112 67888888888766333
No 80
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.97 E-value=1.8e-27 Score=189.06 Aligned_cols=311 Identities=18% Similarity=0.241 Sum_probs=230.2
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccc--ccccccceeccccCCCcEEEEEEecCC
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHR--ENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.++.......|.+|+| +|.|.+.|+|+...+.+|--...-......+. ..++....+.-+.|++.|+|.+|+|+|
T Consensus 25 ~i~~l~dsqairav~f---hp~g~lyavgsnskt~ric~yp~l~~~r~~hea~~~pp~v~~kr~khhkgsiyc~~ws~~g 101 (350)
T KOG0641|consen 25 AINILEDSQAIRAVAF---HPAGGLYAVGSNSKTFRICAYPALIDLRHAHEAAKQPPSVLCKRNKHHKGSIYCTAWSPCG 101 (350)
T ss_pred EEEEecchhheeeEEe---cCCCceEEeccCCceEEEEccccccCcccccccccCCCeEEeeeccccCccEEEEEecCcc
Confidence 3444456778899999 99999999999999999875432211100010 112223345567899999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCCee-----eecccCcCCCEEEEEeeCC---CCCeEEEEeC-CCcEEEEeCCCCCCCCCccc
Q 010390 121 TNILTASGDQTIKIWDAEKKKC-----TGALMGHTGSIKSLCSHPT---NSDILVSGSR-DGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~-----~~~~~~h~~~v~~l~~~~~---~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~ 191 (512)
++|++|+.|.+|++.-++...+ -..+.-|.+.|..++|..+ ++.+|++++. |..|.+-|...++...
T Consensus 102 eliatgsndk~ik~l~fn~dt~~~~g~dle~nmhdgtirdl~fld~~~s~~~il~s~gagdc~iy~tdc~~g~~~~---- 177 (350)
T KOG0641|consen 102 ELIATGSNDKTIKVLPFNADTCNATGHDLEFNMHDGTIRDLAFLDDPESGGAILASAGAGDCKIYITDCGRGQGFH---- 177 (350)
T ss_pred CeEEecCCCceEEEEecccccccccCcceeeeecCCceeeeEEecCCCcCceEEEecCCCcceEEEeecCCCCcce----
Confidence 9999999999999987654433 2346679999999999643 3357777664 5667776766554332
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
.+.+|.+.|.++- .-+..++++|+.|.+|++||++-..++........ .-.
T Consensus 178 -----------------------a~sghtghilaly--swn~~m~~sgsqdktirfwdlrv~~~v~~l~~~~~----~~g 228 (350)
T KOG0641|consen 178 -----------------------ALSGHTGHILALY--SWNGAMFASGSQDKTIRFWDLRVNSCVNTLDNDFH----DGG 228 (350)
T ss_pred -----------------------eecCCcccEEEEE--EecCcEEEccCCCceEEEEeeeccceeeeccCccc----CCC
Confidence 4557777777763 22345666799999999999998877655422111 111
Q ss_pred ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
.....|.+++.+|.|++|++|..|....+||++. ...++.+..| ...+.++.|+|...++++++.|..|++-|+..
T Consensus 229 lessavaav~vdpsgrll~sg~~dssc~lydirg--~r~iq~f~ph--sadir~vrfsp~a~yllt~syd~~ikltdlqg 304 (350)
T KOG0641|consen 229 LESSAVAAVAVDPSGRLLASGHADSSCMLYDIRG--GRMIQRFHPH--SADIRCVRFSPGAHYLLTCSYDMKIKLTDLQG 304 (350)
T ss_pred cccceeEEEEECCCcceeeeccCCCceEEEEeeC--CceeeeeCCC--ccceeEEEeCCCceEEEEecccceEEEeeccc
Confidence 1235689999999999999999999999999986 3455555544 46688999999999999999999999999975
Q ss_pred C---CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 352 P---QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 352 ~---~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
. +.+......|.+.+..+.|+|.. .-+++.+.|.++.+|-+.
T Consensus 305 dla~el~~~vv~ehkdk~i~~rwh~~d-~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 305 DLAHELPIMVVAEHKDKAIQCRWHPQD-FSFISSSADKTATLWALN 349 (350)
T ss_pred chhhcCceEEEEeccCceEEEEecCcc-ceeeeccCcceEEEeccC
Confidence 4 33445667899999999999998 889999999999999764
No 81
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.97 E-value=1.5e-29 Score=221.17 Aligned_cols=276 Identities=22% Similarity=0.406 Sum_probs=216.6
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILT 125 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s 125 (512)
.-|.+.|+.+.++ ..+-.++|+++..+.|.|||..+...... ...+..+-..+.+|+..-++++|++ ..-+|++
T Consensus 121 i~h~gEVnRaRym--PQnp~iVAt~t~~~dv~Vfd~tk~~s~~~---~~~~~~Pdl~L~gH~~eg~glsWn~~~~g~Lls 195 (422)
T KOG0264|consen 121 INHDGEVNRARYM--PQNPNIVATKTSSGDVYVFDYTKHPSKPK---ASGECRPDLRLKGHEKEGYGLSWNRQQEGTLLS 195 (422)
T ss_pred ccCCccchhhhhC--CCCCcEEEecCCCCCEEEEEeccCCCccc---ccccCCCceEEEeecccccccccccccceeEee
Confidence 3499999999996 33557899999999999999865432110 0013344557899999899999999 4457889
Q ss_pred EeCCCcEEEEeCCCCe-------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 126 ASGDQTIKIWDAEKKK-------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
++.|++|.+||+.... +...+.+|...|..++|++....+|++++.|+.+.|||+++...
T Consensus 196 ~~~d~~i~lwdi~~~~~~~~~~~p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~~~------------- 262 (422)
T KOG0264|consen 196 GSDDHTICLWDINAESKEDKVVDPKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSNTS------------- 262 (422)
T ss_pred ccCCCcEEEEeccccccCCccccceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCCCC-------------
Confidence 9999999999997542 34567899999999999999989999999999999999996311
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
+......+|...+.|++|+|-+..++++|+.|++|.+||+|+.+.... .+.+|...|.
T Consensus 263 ------------~~~~~~~ah~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh----------~~e~H~dev~ 320 (422)
T KOG0264|consen 263 ------------KPSHSVKAHSAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLH----------TFEGHEDEVF 320 (422)
T ss_pred ------------CCcccccccCCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCce----------eccCCCcceE
Confidence 122255688999999999999999999899999999999999877443 6888999999
Q ss_pred EEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc
Q 010390 279 SLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 279 ~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~ 357 (512)
++.|+|.. ..|++++.|+.+.+||+........ ++ -..|| .-.++.
T Consensus 321 ~V~WSPh~etvLASSg~D~rl~vWDls~ig~eq~------------------~e------da~dg---------ppEllF 367 (422)
T KOG0264|consen 321 QVEWSPHNETVLASSGTDRRLNVWDLSRIGEEQS------------------PE------DAEDG---------PPELLF 367 (422)
T ss_pred EEEeCCCCCceeEecccCCcEEEEeccccccccC------------------hh------hhccC---------CcceeE
Confidence 99999964 5788889999999999854321110 00 00112 122234
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
.-.||...|..+.|+|..+..++|.++|+.+.||++..
T Consensus 368 ~HgGH~~kV~DfsWnp~ePW~I~SvaeDN~LqIW~~s~ 405 (422)
T KOG0264|consen 368 IHGGHTAKVSDFSWNPNEPWTIASVAEDNILQIWQMAE 405 (422)
T ss_pred EecCcccccccccCCCCCCeEEEEecCCceEEEeeccc
Confidence 55789999999999999999999999999999999874
No 82
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.7e-28 Score=204.47 Aligned_cols=281 Identities=18% Similarity=0.251 Sum_probs=216.5
Q ss_pred EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc
Q 010390 67 IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL 146 (512)
Q Consensus 67 ~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~ 146 (512)
.|++|++...|.=+++.-.. ............++..+.+|.+.|++++. ++.++|+|+.|.+|+|||+.....+..+
T Consensus 3 ~iIvGtYE~~i~Gf~l~~~~-~~~~~s~~~~l~~lF~~~aH~~sitavAV--s~~~~aSGssDetI~IYDm~k~~qlg~l 79 (362)
T KOG0294|consen 3 EIIVGTYEHVILGFKLDPEP-KGCTDSVKPTLKPLFAFSAHAGSITALAV--SGPYVASGSSDETIHIYDMRKRKQLGIL 79 (362)
T ss_pred eEEEeeeeeEEEEEEeccCc-cccccccceeeeccccccccccceeEEEe--cceeEeccCCCCcEEEEeccchhhhcce
Confidence 46788888888777765332 11111122334557788999999999998 5899999999999999999999999999
Q ss_pred cCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 147 MGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 147 ~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
..|.+.|+++.|.+.- .+.|++|+.||.|.+|+...- .....+++|.+.|+.
T Consensus 80 l~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W---------------------------~~~~slK~H~~~Vt~ 132 (362)
T KOG0294|consen 80 LSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSW---------------------------ELLKSLKAHKGQVTD 132 (362)
T ss_pred eccccceEEEEecCCcchhheeeecCCCcEEEEEcCCe---------------------------EEeeeecccccccce
Confidence 9999999999998754 138999999999999998743 334467789999999
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
++.+|.++..++.| .|+.+++||+-+++.-......+ .-+.+.|+|.|.+++.+..+ .|-+|.+..
T Consensus 133 lsiHPS~KLALsVg-~D~~lr~WNLV~Gr~a~v~~L~~------------~at~v~w~~~Gd~F~v~~~~-~i~i~q~d~ 198 (362)
T KOG0294|consen 133 LSIHPSGKLALSVG-GDQVLRTWNLVRGRVAFVLNLKN------------KATLVSWSPQGDHFVVSGRN-KIDIYQLDN 198 (362)
T ss_pred eEecCCCceEEEEc-CCceeeeehhhcCccceeeccCC------------cceeeEEcCCCCEEEEEecc-EEEEEeccc
Confidence 99999999988877 69999999999988765432222 23449999999988888655 688888754
Q ss_pred CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEe--CCCCCCeEEEEe
Q 010390 306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW--CPNEAGKIVTSS 383 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~--~~~~~~~l~s~~ 383 (512)
... ...+... ..+.++.| -++..|++|++|+.|.+||.++... ...+.+|...|-++.+ .|++ .+|+|+|
T Consensus 199 A~v--~~~i~~~---~r~l~~~~-l~~~~L~vG~d~~~i~~~D~ds~~~-~~~~~AH~~RVK~i~~~~~~~~-~~lvTaS 270 (362)
T KOG0294|consen 199 ASV--FREIENP---KRILCATF-LDGSELLVGGDNEWISLKDTDSDTP-LTEFLAHENRVKDIASYTNPEH-EYLVTAS 270 (362)
T ss_pred HhH--hhhhhcc---ccceeeee-cCCceEEEecCCceEEEeccCCCcc-ceeeecchhheeeeEEEecCCc-eEEEEec
Confidence 221 1111111 12333444 4677899999999999999998554 5788999999999984 3556 7999999
Q ss_pred CCCcEEEEeCCCCccc
Q 010390 384 DDYTVRLWSLENSRCS 399 (512)
Q Consensus 384 ~dg~i~vwd~~~~~~~ 399 (512)
.||.|+|||++.....
T Consensus 271 SDG~I~vWd~~~~~k~ 286 (362)
T KOG0294|consen 271 SDGFIKVWDIDMETKK 286 (362)
T ss_pred cCceEEEEEccccccC
Confidence 9999999999877544
No 83
>KOG0294 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=1.3e-28 Score=205.17 Aligned_cols=273 Identities=17% Similarity=0.212 Sum_probs=209.8
Q ss_pred eeecCcccccccccCCCCCCceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc
Q 010390 16 RELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN 95 (512)
Q Consensus 16 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~ 95 (512)
+-+.||+....|....... ...-..++.+..|.+++.+|++ ++.++|+|+.|-+|+|||+.+..
T Consensus 11 ~~i~Gf~l~~~~~~~~~s~--~~~l~~lF~~~aH~~sitavAV-----s~~~~aSGssDetI~IYDm~k~~--------- 74 (362)
T KOG0294|consen 11 HVILGFKLDPEPKGCTDSV--KPTLKPLFAFSAHAGSITALAV-----SGPYVASGSSDETIHIYDMRKRK--------- 74 (362)
T ss_pred eEEEEEEeccCcccccccc--ceeeeccccccccccceeEEEe-----cceeEeccCCCCcEEEEeccchh---------
Confidence 4456666665552111111 2222346778889999999999 78999999999999999998764
Q ss_pred ccccceeccccCCCcEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390 96 AEKARISDWVAHQNAIFDLCWIKEDT--NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG 173 (512)
Q Consensus 96 ~~~~~~~~~~~h~~~V~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 173 (512)
++..+..|.+.|+++.|.++-. +|++|+.||.|.+|+....+++..+++|.+.|+.++.+|.+ .+.++.+.|+
T Consensus 75 ----qlg~ll~HagsitaL~F~~~~S~shLlS~sdDG~i~iw~~~~W~~~~slK~H~~~Vt~lsiHPS~-KLALsVg~D~ 149 (362)
T KOG0294|consen 75 ----QLGILLSHAGSITALKFYPPLSKSHLLSGSDDGHIIIWRVGSWELLKSLKAHKGQVTDLSIHPSG-KLALSVGGDQ 149 (362)
T ss_pred ----hhcceeccccceEEEEecCCcchhheeeecCCCcEEEEEcCCeEEeeeecccccccceeEecCCC-ceEEEEcCCc
Confidence 3777888999999999999665 89999999999999999999999999999999999999998 8999999999
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL 253 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~ 253 (512)
.++.||+-+++....... ....+.+.|+|.|.++++.+ ...|-+|.+.+.
T Consensus 150 ~lr~WNLV~Gr~a~v~~L----------------------------~~~at~v~w~~~Gd~F~v~~--~~~i~i~q~d~A 199 (362)
T KOG0294|consen 150 VLRTWNLVRGRVAFVLNL----------------------------KNKATLVSWSPQGDHFVVSG--RNKIDIYQLDNA 199 (362)
T ss_pred eeeeehhhcCccceeecc----------------------------CCcceeeEEcCCCCEEEEEe--ccEEEEEecccH
Confidence 999999987764432211 12344599999999988865 567999998876
Q ss_pred cceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
........+ ..+.++.|. ++..|++|..|+.|.+||... ..+...+.+|.....-...--.|++.
T Consensus 200 ~v~~~i~~~------------~r~l~~~~l-~~~~L~vG~d~~~i~~~D~ds--~~~~~~~~AH~~RVK~i~~~~~~~~~ 264 (362)
T KOG0294|consen 200 SVFREIENP------------KRILCATFL-DGSELLVGGDNEWISLKDTDS--DTPLTEFLAHENRVKDIASYTNPEHE 264 (362)
T ss_pred hHhhhhhcc------------ccceeeeec-CCceEEEecCCceEEEeccCC--CccceeeecchhheeeeEEEecCCce
Confidence 654432111 235566665 567899999999999999765 55666677765443222233457789
Q ss_pred EEEEecCCCCEEEEecCCCCC
Q 010390 334 HILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~~~~~ 354 (512)
+|++++.||.|++||++....
T Consensus 265 ~lvTaSSDG~I~vWd~~~~~k 285 (362)
T KOG0294|consen 265 YLVTASSDGFIKVWDIDMETK 285 (362)
T ss_pred EEEEeccCceEEEEEcccccc
Confidence 999999999999999987543
No 84
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=2.8e-29 Score=209.26 Aligned_cols=298 Identities=15% Similarity=0.235 Sum_probs=243.9
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
...+..++.||.+.|..|+. .....++.+++.|.+-+||.++++.+ +.++.+|.+.|+++.|++
T Consensus 137 ~~~lvre~~GHkDGiW~Vaa---~~tqpi~gtASADhTA~iWs~Esg~C-------------L~~Y~GH~GSVNsikfh~ 200 (481)
T KOG0300|consen 137 KFRLVRELEGHKDGIWHVAA---DSTQPICGTASADHTARIWSLESGAC-------------LATYTGHTGSVNSIKFHN 200 (481)
T ss_pred eEeehhhhcccccceeeehh---hcCCcceeecccccceeEEeeccccc-------------eeeecccccceeeEEecc
Confidence 34566788999999999998 55566999999999999999998855 888999999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeC------CCC----------------------------------eeeecccCcCCCEEEEEe
Q 010390 119 EDTNILTASGDQTIKIWDA------EKK----------------------------------KCTGALMGHTGSIKSLCS 158 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~------~~~----------------------------------~~~~~~~~h~~~v~~l~~ 158 (512)
.+.++++++.|++..||.. ... .++..+.+|.+.|.+..|
T Consensus 201 s~~L~lTaSGD~taHIW~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~tiRvPl~~ltgH~~vV~a~dW 280 (481)
T KOG0300|consen 201 SGLLLLTASGDETAHIWKAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGHTIRVPLMRLTGHRAVVSACDW 280 (481)
T ss_pred ccceEEEccCCcchHHHHHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCceeeeeeeeeeccccceEehhh
Confidence 9999999999999999962 110 034567889999999999
Q ss_pred eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390 159 HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA 238 (512)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 238 (512)
...+ +.+++++.|.+-.+||+++++... .+.+|+...+.++-+|..+.+++
T Consensus 281 L~gg-~Q~vTaSWDRTAnlwDVEtge~v~---------------------------~LtGHd~ELtHcstHptQrLVvT- 331 (481)
T KOG0300|consen 281 LAGG-QQMVTASWDRTANLWDVETGEVVN---------------------------ILTGHDSELTHCSTHPTQRLVVT- 331 (481)
T ss_pred hcCc-ceeeeeeccccceeeeeccCceec---------------------------cccCcchhccccccCCcceEEEE-
Confidence 8866 899999999999999999887654 56688889999999998887777
Q ss_pred eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390 239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR 318 (512)
Q Consensus 239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 318 (512)
++.|.+.++||++..-.... .+++|...|+++.|..+. .+++|+.|.+|++||++++.. ++..+..
T Consensus 332 sSrDtTFRLWDFReaI~sV~----------VFQGHtdtVTS~vF~~dd-~vVSgSDDrTvKvWdLrNMRs-plATIRt-- 397 (481)
T KOG0300|consen 332 SSRDTTFRLWDFREAIQSVA----------VFQGHTDTVTSVVFNTDD-RVVSGSDDRTVKVWDLRNMRS-PLATIRT-- 397 (481)
T ss_pred eccCceeEeccchhhcceee----------eecccccceeEEEEecCC-ceeecCCCceEEEeeeccccC-cceeeec--
Confidence 55899999999995433222 688999999999998764 588999999999999987643 3333332
Q ss_pred eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC---CCceeccccCCeEEEEeCCCCC-CeEEEEeCCCcEEEEeCC
Q 010390 319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA---DPIKLKSHDGEVTAVNWCPNEA-GKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~---~~~~~~~h~~~v~~v~~~~~~~-~~l~s~~~dg~i~vwd~~ 394 (512)
.+.+..++.+..+..|+.--++..|++||++.... +...-.+|...|+|++|..+.+ .-|+++|.|..+.-|++.
T Consensus 398 -dS~~NRvavs~g~~iIAiPhDNRqvRlfDlnG~RlaRlPrtsRqgHrRMV~c~AW~eehp~cnLftcGFDR~v~gW~in 476 (481)
T KOG0300|consen 398 -DSPANRVAVSKGHPIIAIPHDNRQVRLFDLNGNRLARLPRTSRQGHRRMVTCCAWLEEHPACNLFTCGFDRMVAGWKIN 476 (481)
T ss_pred -CCccceeEeecCCceEEeccCCceEEEEecCCCccccCCcccccccceeeeeeeccccCcccccccccccceeeeeEec
Confidence 34566788888888999999899999999987543 2234578999999999986542 358899999999999987
Q ss_pred CC
Q 010390 395 NS 396 (512)
Q Consensus 395 ~~ 396 (512)
..
T Consensus 477 ~p 478 (481)
T KOG0300|consen 477 TP 478 (481)
T ss_pred cc
Confidence 54
No 85
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=8.5e-30 Score=231.64 Aligned_cols=292 Identities=19% Similarity=0.341 Sum_probs=231.2
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK- 140 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~- 140 (512)
-|+++||.+|+.||.|++|+....... .+......++.|...|+.+....+++.|++++.|-+|++|+...+
T Consensus 34 a~~~ryLfTgGRDg~i~~W~~~~d~~~-------~s~~~~asme~HsDWVNDiiL~~~~~tlIS~SsDtTVK~W~~~~~~ 106 (735)
T KOG0308|consen 34 APNGRYLFTGGRDGIIRLWSVTQDSNE-------PSTPYIASMEHHSDWVNDIILCGNGKTLISASSDTTVKVWNAHKDN 106 (735)
T ss_pred CCCCceEEecCCCceEEEeccccccCC-------cccchhhhhhhhHhHHhhHHhhcCCCceEEecCCceEEEeecccCc
Confidence 367788999999999999998654321 111237778999999999999999999999999999999999877
Q ss_pred -eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee-ccc
Q 010390 141 -KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR-RKA 218 (512)
Q Consensus 141 -~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~ 218 (512)
-++.++..|.+.|.|+++-..+..++|+||.|+.|.+||++++......... ...... ..+
T Consensus 107 ~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~l~~s~n-----------------~~t~~sl~sG 169 (735)
T KOG0308|consen 107 TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTATLVASFN-----------------NVTVNSLGSG 169 (735)
T ss_pred chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchhhhhhcc-----------------ccccccCCCC
Confidence 6888999999999999994334489999999999999999977431110000 000111 126
Q ss_pred ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeE
Q 010390 219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI 298 (512)
Q Consensus 219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 298 (512)
+...|++++.++.+.. +++|+.++.+++||.++.+... .+.+|...|.++..+.||..+++++.||+|
T Consensus 170 ~k~siYSLA~N~t~t~-ivsGgtek~lr~wDprt~~kim-----------kLrGHTdNVr~ll~~dDGt~~ls~sSDgtI 237 (735)
T KOG0308|consen 170 PKDSIYSLAMNQTGTI-IVSGGTEKDLRLWDPRTCKKIM-----------KLRGHTDNVRVLLVNDDGTRLLSASSDGTI 237 (735)
T ss_pred CccceeeeecCCcceE-EEecCcccceEEecccccccee-----------eeeccccceEEEEEcCCCCeEeecCCCceE
Confidence 7789999999999954 4457789999999999988876 467999999999999999999999999999
Q ss_pred EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCe
Q 010390 299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK 378 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~ 378 (512)
++||+.. +..+.++..|... +.++..+|+-..+++|+.||.|+.=|+.+.... ..+...+.+|..+..+.+. +-
T Consensus 238 rlWdLgq--QrCl~T~~vH~e~--VWaL~~~~sf~~vYsG~rd~~i~~Tdl~n~~~~-tlick~daPv~~l~~~~~~-~~ 311 (735)
T KOG0308|consen 238 RLWDLGQ--QRCLATYIVHKEG--VWALQSSPSFTHVYSGGRDGNIYRTDLRNPAKS-TLICKEDAPVLKLHLHEHD-NS 311 (735)
T ss_pred Eeeeccc--cceeeeEEeccCc--eEEEeeCCCcceEEecCCCCcEEecccCCchhh-eEeecCCCchhhhhhcccc-CC
Confidence 9999965 4556666655533 778888899999999999999999999986543 3344456778888887665 45
Q ss_pred EEEEeCCCcEEEEeCCC
Q 010390 379 IVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 379 l~s~~~dg~i~vwd~~~ 395 (512)
+-+++.|+.|+-|...-
T Consensus 312 ~WvtTtds~I~rW~~~~ 328 (735)
T KOG0308|consen 312 VWVTTTDSSIKRWKLEP 328 (735)
T ss_pred ceeeeccccceecCCcc
Confidence 57778899999997654
No 86
>KOG0277 consensus Peroxisomal targeting signal type 2 receptor [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=3.5e-29 Score=202.27 Aligned_cols=245 Identities=18% Similarity=0.263 Sum_probs=199.7
Q ss_pred EEEEEec-CCCEEEEEe-------CCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 112 FDLCWIK-EDTNILTAS-------GDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 112 ~~l~~s~-~~~~l~s~~-------~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
+++.||| -..+|+.+. ..|.+.|-++...+-+..+. .-.+.+..++|++...+.+++++.||++++||+.
T Consensus 12 ysvqfSPf~~nrLavAt~q~yGl~G~G~L~ile~~~~~gi~e~~s~d~~D~LfdV~Wse~~e~~~~~a~GDGSLrl~d~~ 91 (311)
T KOG0277|consen 12 YSVQFSPFVENRLAVATAQHYGLAGNGRLFILEVTDPKGIQECQSYDTEDGLFDVAWSENHENQVIAASGDGSLRLFDLT 91 (311)
T ss_pred ceeEecccccchhheeehhhcccccCceEEEEecCCCCCeEEEEeeecccceeEeeecCCCcceEEEEecCceEEEeccC
Confidence 5788999 233344322 36899999997554444332 2346899999999988999999999999999964
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
.. ..++..++.|..+|.++.|++..+..+.+++.|++|++|+....+.+.
T Consensus 92 ~~--------------------------s~Pi~~~kEH~~EV~Svdwn~~~r~~~ltsSWD~TiKLW~~~r~~Sv~---- 141 (311)
T KOG0277|consen 92 MP--------------------------SKPIHKFKEHKREVYSVDWNTVRRRIFLTSSWDGTIKLWDPNRPNSVQ---- 141 (311)
T ss_pred CC--------------------------CcchhHHHhhhhheEEeccccccceeEEeeccCCceEeecCCCCcceE----
Confidence 32 234457788999999999999877777778899999999999887776
Q ss_pred CCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEec
Q 010390 262 PHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGS 339 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~ 339 (512)
.+.+|...|....|+| .++.+++++.|+.+++||++.... ...+..|. ..+.++.|+. +.+.|++|+
T Consensus 142 -------Tf~gh~~~Iy~a~~sp~~~nlfas~Sgd~~l~lwdvr~~gk--~~~i~ah~--~Eil~cdw~ky~~~vl~Tg~ 210 (311)
T KOG0277|consen 142 -------TFNGHNSCIYQAAFSPHIPNLFASASGDGTLRLWDVRSPGK--FMSIEAHN--SEILCCDWSKYNHNVLATGG 210 (311)
T ss_pred -------eecCCccEEEEEecCCCCCCeEEEccCCceEEEEEecCCCc--eeEEEecc--ceeEeecccccCCcEEEecC
Confidence 4677889999999998 567999999999999999877532 22355554 4577888987 466789999
Q ss_pred CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
.|+.|+.||+++-+.++..+.+|.-.|..+.|+|....+|+|++.|-+++|||...+.
T Consensus 211 vd~~vr~wDir~~r~pl~eL~gh~~AVRkvk~Sph~~~lLaSasYDmT~riw~~~~~d 268 (311)
T KOG0277|consen 211 VDNLVRGWDIRNLRTPLFELNGHGLAVRKVKFSPHHASLLASASYDMTVRIWDPERQD 268 (311)
T ss_pred CCceEEEEehhhccccceeecCCceEEEEEecCcchhhHhhhccccceEEecccccch
Confidence 9999999999999888899999999999999999987899999999999999998554
No 87
>PTZ00421 coronin; Provisional
Probab=99.97 E-value=1.6e-28 Score=233.87 Aligned_cols=216 Identities=18% Similarity=0.235 Sum_probs=171.3
Q ss_pred ecCCccCCcceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-CE
Q 010390 45 EHHGEETPPLAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-TN 122 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~ 122 (512)
.+.||.++|.+|+| +| ++++||+|+.||.|+|||+.+..... .....+..+.+|...|.+++|+|++ .+
T Consensus 70 ~l~GH~~~V~~v~f---sP~d~~~LaSgS~DgtIkIWdi~~~~~~~------~~~~~l~~L~gH~~~V~~l~f~P~~~~i 140 (493)
T PTZ00421 70 ILLGQEGPIIDVAF---NPFDPQKLFTASEDGTIMGWGIPEEGLTQ------NISDPIVHLQGHTKKVGIVSFHPSAMNV 140 (493)
T ss_pred eEeCCCCCEEEEEE---cCCCCCEEEEEeCCCEEEEEecCCCcccc------ccCcceEEecCCCCcEEEEEeCcCCCCE
Confidence 46799999999999 88 88999999999999999997542110 0113466788999999999999975 68
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
|++|+.|++|+|||+.+++.+..+.+|...|.+++|+|++ .+|++++.|+.|++||+++++...
T Consensus 141 LaSgs~DgtVrIWDl~tg~~~~~l~~h~~~V~sla~spdG-~lLatgs~Dg~IrIwD~rsg~~v~--------------- 204 (493)
T PTZ00421 141 LASAGADMVVNVWDVERGKAVEVIKCHSDQITSLEWNLDG-SLLCTTSKDKKLNIIDPRDGTIVS--------------- 204 (493)
T ss_pred EEEEeCCCEEEEEECCCCeEEEEEcCCCCceEEEEEECCC-CEEEEecCCCEEEEEECCCCcEEE---------------
Confidence 9999999999999999999999999999999999999988 899999999999999998765322
Q ss_pred ccccccccccceecccccc-cEEEEEEeecCCEEEEEee---cCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 203 GAHLLSQSKRVSRRKAASM-SITSVLYLKDEVSIATASA---VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.+..|.. ....+.|.+++..++++|. .|+.|++||+++........ .......+.
T Consensus 205 ------------tl~~H~~~~~~~~~w~~~~~~ivt~G~s~s~Dr~VklWDlr~~~~p~~~~---------~~d~~~~~~ 263 (493)
T PTZ00421 205 ------------SVEAHASAKSQRCLWAKRKDLIITLGCSKSQQRQIMLWDTRKMASPYSTV---------DLDQSSALF 263 (493)
T ss_pred ------------EEecCCCCcceEEEEcCCCCeEEEEecCCCCCCeEEEEeCCCCCCceeEe---------ccCCCCceE
Confidence 2234443 3456788888888887663 47999999998765433211 111223456
Q ss_pred EEEeCCCCCEEEEEe-cCCeEEEEEcccC
Q 010390 279 SLSQDSNGVFLTASC-MDHRIYLYNVLQL 306 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 306 (512)
...|++++.+|++++ .|+.|++||+.+.
T Consensus 264 ~~~~d~d~~~L~lggkgDg~Iriwdl~~~ 292 (493)
T PTZ00421 264 IPFFDEDTNLLYIGSKGEGNIRCFELMNE 292 (493)
T ss_pred EEEEcCCCCEEEEEEeCCCeEEEEEeeCC
Confidence 677899999999887 5999999999764
No 88
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.97 E-value=7.1e-28 Score=200.39 Aligned_cols=273 Identities=17% Similarity=0.215 Sum_probs=212.3
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD 129 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 129 (512)
.+.|.+|.| +|.++.|++++.||.+++||+.... +...-.|..++.+++|.+ ...+++|+-|
T Consensus 13 ~d~IS~v~f---~~~~~~LLvssWDgslrlYdv~~~~--------------l~~~~~~~~plL~c~F~d-~~~~~~G~~d 74 (323)
T KOG1036|consen 13 EDGISSVKF---SPSSSDLLVSSWDGSLRLYDVPANS--------------LKLKFKHGAPLLDCAFAD-ESTIVTGGLD 74 (323)
T ss_pred hhceeeEEE---cCcCCcEEEEeccCcEEEEeccchh--------------hhhheecCCceeeeeccC-CceEEEeccC
Confidence 566788888 8888999999999999999987642 333446899999999985 5689999999
Q ss_pred CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390 130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ 209 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
|.|+.+|+.++.... +..|..+|.||.+++.. ..+++|+.|++|++||.+........
T Consensus 75 g~vr~~Dln~~~~~~-igth~~~i~ci~~~~~~-~~vIsgsWD~~ik~wD~R~~~~~~~~-------------------- 132 (323)
T KOG1036|consen 75 GQVRRYDLNTGNEDQ-IGTHDEGIRCIEYSYEV-GCVISGSWDKTIKFWDPRNKVVVGTF-------------------- 132 (323)
T ss_pred ceEEEEEecCCccee-eccCCCceEEEEeeccC-CeEEEcccCccEEEEecccccccccc--------------------
Confidence 999999999887554 55699999999999866 89999999999999999864332211
Q ss_pred cccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEE
Q 010390 210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFL 289 (512)
Q Consensus 210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l 289 (512)
.....|.++... +..|++ |+.+..|.+||+++.....+. .....+-.+.|+++-|++.-.
T Consensus 133 --------d~~kkVy~~~v~--g~~LvV-g~~~r~v~iyDLRn~~~~~q~---------reS~lkyqtR~v~~~pn~eGy 192 (323)
T KOG1036|consen 133 --------DQGKKVYCMDVS--GNRLVV-GTSDRKVLIYDLRNLDEPFQR---------RESSLKYQTRCVALVPNGEGY 192 (323)
T ss_pred --------ccCceEEEEecc--CCEEEE-eecCceEEEEEcccccchhhh---------ccccceeEEEEEEEecCCCce
Confidence 112367766654 556666 557999999999998776532 223334568999999999999
Q ss_pred EEEecCCeEEEEEcccC--CCCceEeeeece-------eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 290 TASCMDHRIYLYNVLQL--DKGPIQHFSGCR-------IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 290 ~~~~~dg~i~i~d~~~~--~~~~~~~~~~~~-------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
++++-||+|.+=.+... .......+..|. .--++.+++|+|-...||+|+.||.|.+||+.+.+. +..+.
T Consensus 193 ~~sSieGRVavE~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~~tfaTgGsDG~V~~Wd~~~rKr-l~q~~ 271 (323)
T KOG1036|consen 193 VVSSIEGRVAVEYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIHGTFATGGSDGIVNIWDLFNRKR-LKQLA 271 (323)
T ss_pred EEEeecceEEEEccCCchHHhhhceeEEeeecccCCceEEEEeceeEeccccceEEecCCCceEEEccCcchhh-hhhcc
Confidence 99999999888655432 223334444443 334678899999999999999999999999988776 45666
Q ss_pred cccCCeEEEEeCCCCCCeEEEEeC
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSSD 384 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~~ 384 (512)
..+..|.+++|+.+| ..||.++.
T Consensus 272 ~~~~SI~slsfs~dG-~~LAia~s 294 (323)
T KOG1036|consen 272 KYETSISSLSFSMDG-SLLAIASS 294 (323)
T ss_pred CCCCceEEEEeccCC-CeEEEEec
Confidence 667789999999999 88888863
No 89
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.97 E-value=3e-29 Score=232.53 Aligned_cols=295 Identities=21% Similarity=0.288 Sum_probs=234.4
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC---CCcEEEEEEec-CCCEEEE
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH---QNAIFDLCWIK-EDTNILT 125 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~s~-~~~~l~s 125 (512)
+++..+|+. .++-..|+.++.. .+.||.++.......+ ...++.. .-.+..+.|.. +.++|++
T Consensus 39 k~~~nAIs~---nr~~~qiv~AGrs-~lklyai~~~~~~~~~---------~~~~k~kqn~~~S~~DVkW~~~~~NlIAT 105 (839)
T KOG0269|consen 39 KAKANAISV---NRDINQIVVAGRS-LLKLYAINPNDFSEKC---------NHRFKTKQNKFYSAADVKWGQLYSNLIAT 105 (839)
T ss_pred ccccceEee---cCCcceeEEeccc-ceeeEeeCcccCCcce---------eeecccccceeeehhhcccccchhhhhee
Confidence 345667777 7888888888744 7888887654321111 1111111 12455677876 6788999
Q ss_pred EeCCCcEEEEeCCC---CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 126 ASGDQTIKIWDAEK---KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 126 ~~~dg~i~iwd~~~---~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
++..|.|.+||+.. .+.+..|..|...|+++.|++..+++|++|+.||.|++||++......
T Consensus 106 ~s~nG~i~vWdlnk~~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~vK~~DlR~~~S~~--------------- 170 (839)
T KOG0269|consen 106 CSTNGVISVWDLNKSIRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGTVKCWDLRSKKSKS--------------- 170 (839)
T ss_pred ecCCCcEEEEecCccccchhhhHhhhhccceeeeeeccCCccEEEecCCCceEEEEeeecccccc---------------
Confidence 99999999999987 566778899999999999999999999999999999999999766544
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
.+.+....|..+.|+|.....++++.++|.+.+||++....... .+..|.++|.++.|
T Consensus 171 ------------t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~r~~~----------k~~AH~GpV~c~nw 228 (839)
T KOG0269|consen 171 ------------TFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPDRCEK----------KLTAHNGPVLCLNW 228 (839)
T ss_pred ------------cccccchhhhceeeccCCCceEEEecCCceEEEeeccCchhHHH----------HhhcccCceEEEee
Confidence 33345668999999998777777788999999999998765544 58899999999999
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEec--CCCCEEEEecCCCCCCCcee
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGS--SDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~--~dg~i~iw~~~~~~~~~~~~ 359 (512)
+|++.+||+|+.|+.|+|||+.+....+...+... ..+.++.|-|...+. ++++ .|-.|+|||++.+-.+..++
T Consensus 229 hPnr~~lATGGRDK~vkiWd~t~~~~~~~~tInTi---apv~rVkWRP~~~~hLAtcsmv~dtsV~VWDvrRPYIP~~t~ 305 (839)
T KOG0269|consen 229 HPNREWLATGGRDKMVKIWDMTDSRAKPKHTINTI---APVGRVKWRPARSYHLATCSMVVDTSVHVWDVRRPYIPYATF 305 (839)
T ss_pred cCCCceeeecCCCccEEEEeccCCCccceeEEeec---ceeeeeeeccCccchhhhhhccccceEEEEeeccccccceee
Confidence 99999999999999999999976555555555433 467789999987654 4443 47789999999998888899
Q ss_pred ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
..|...++.++|.......|.+++.||+|..-.++++.
T Consensus 306 ~eH~~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat 343 (839)
T KOG0269|consen 306 LEHTDSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNAT 343 (839)
T ss_pred eccCccccceeccCCCceeeEeecCccHHHHhhhhccc
Confidence 99999999999987555789999999999877776654
No 90
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.97 E-value=1e-28 Score=198.43 Aligned_cols=258 Identities=14% Similarity=0.216 Sum_probs=203.3
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCCEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDTNI 123 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l 123 (512)
-.+|++.|..+.. .--|+.|||++.|++|+||.++...+ ..++.++.+|.++|..++|.. .|..|
T Consensus 7 dt~H~D~IHda~l---DyygkrlATcsSD~tVkIf~v~~n~~----------s~ll~~L~Gh~GPVwqv~wahPk~G~iL 73 (299)
T KOG1332|consen 7 DTQHEDMIHDAQL---DYYGKRLATCSSDGTVKIFEVRNNGQ----------SKLLAELTGHSGPVWKVAWAHPKFGTIL 73 (299)
T ss_pred hhhhhhhhhHhhh---hhhcceeeeecCCccEEEEEEcCCCC----------ceeeeEecCCCCCeeEEeecccccCcEe
Confidence 4568888888877 66899999999999999999987633 356889999999999999976 89999
Q ss_pred EEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 124 LTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++++.||.|.||.-++++ .......|...|++++|.|.+ +..|++++.||.|.+.+.+....-
T Consensus 74 AScsYDgkVIiWke~~g~w~k~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w-------------- 139 (299)
T KOG1332|consen 74 ASCSYDGKVIIWKEENGRWTKAYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGW-------------- 139 (299)
T ss_pred eEeecCceEEEEecCCCchhhhhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCc--------------
Confidence 999999999999988874 345567899999999999965 357899999999999998765211
Q ss_pred ccccccccccccceecccccccEEEEEEeec---C-----------CEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKD---E-----------VSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~---~-----------~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
.......+|.-.|++++|.|. | +.|++ |+.|..|+||+..+.+-....
T Consensus 140 ----------~t~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvS-gGcDn~VkiW~~~~~~w~~e~------- 201 (299)
T KOG1332|consen 140 ----------TTSKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVS-GGCDNLVKIWKFDSDSWKLER------- 201 (299)
T ss_pred ----------cchhhhhccccccceeeecCcCCCccccccCcccccceeec-cCCccceeeeecCCcchhhhh-------
Confidence 111234578889999999986 3 33555 557999999999987433322
Q ss_pred cccccccccCeeEEEeCCCC----CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 267 SSAKETRLHGISSLSQDSNG----VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~----~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
.+.+|...|+.++|.|.- ..|++++.||++.||..... ..+-....-+.....+..+.||..|+.|++++.|+
T Consensus 202 --~l~~H~dwVRDVAwaP~~gl~~s~iAS~SqDg~viIwt~~~e-~e~wk~tll~~f~~~~w~vSWS~sGn~LaVs~GdN 278 (299)
T KOG1332|consen 202 --TLEGHKDWVRDVAWAPSVGLPKSTIASCSQDGTVIIWTKDEE-YEPWKKTLLEEFPDVVWRVSWSLSGNILAVSGGDN 278 (299)
T ss_pred --hhhhcchhhhhhhhccccCCCceeeEEecCCCcEEEEEecCc-cCcccccccccCCcceEEEEEeccccEEEEecCCc
Confidence 488999999999999963 58999999999999997632 22211111122345577899999999999999999
Q ss_pred CEEEEecCC
Q 010390 343 NAYVWQVNK 351 (512)
Q Consensus 343 ~i~iw~~~~ 351 (512)
.|.+|.-+.
T Consensus 279 kvtlwke~~ 287 (299)
T KOG1332|consen 279 KVTLWKENV 287 (299)
T ss_pred EEEEEEeCC
Confidence 999997654
No 91
>KOG0772 consensus Uncharacterized conserved protein, contains WD40 repeat [Function unknown]
Probab=99.97 E-value=7.3e-29 Score=219.64 Aligned_cols=301 Identities=15% Similarity=0.138 Sum_probs=224.2
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe----eeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK----CTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~----~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
.-..+++|...|.++++.|.|..|++|+.|.+|++||+.... ..+.+. .....|+++.|++.+ ..|++.+....
T Consensus 159 hEi~l~hgtk~Vsal~~Dp~GaR~~sGs~Dy~v~~wDf~gMdas~~~fr~l~P~E~h~i~sl~ys~Tg-~~iLvvsg~aq 237 (641)
T KOG0772|consen 159 HEIQLKHGTKIVSALAVDPSGARFVSGSLDYTVKFWDFQGMDASMRSFRQLQPCETHQINSLQYSVTG-DQILVVSGSAQ 237 (641)
T ss_pred ceEeccCCceEEEEeeecCCCceeeeccccceEEEEecccccccchhhhccCcccccccceeeecCCC-CeEEEEecCcc
Confidence 345678899999999999999999999999999999987542 122222 233479999999998 66666666779
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
.+++|-...+.........++. .+...++|-..++|.+|+|..+..+.+++.||++++||+.+.+
T Consensus 238 akl~DRdG~~~~e~~KGDQYI~---------------Dm~nTKGHia~lt~g~whP~~k~~FlT~s~DgtlRiWdv~~~k 302 (641)
T KOG0772|consen 238 AKLLDRDGFEIVEFSKGDQYIR---------------DMYNTKGHIAELTCGCWHPDNKEEFLTCSYDGTLRIWDVNNTK 302 (641)
T ss_pred eeEEccCCceeeeeeccchhhh---------------hhhccCCceeeeeccccccCcccceEEecCCCcEEEEecCCch
Confidence 9999987665544443333332 2235568889999999999888777777799999999999766
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEEEECCCCC
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~~~s~~~~ 333 (512)
.......+. ...+..-+++.++|+++|.++++|+.||.|.+|+.......+...+ ..|.....+++++||++|+
T Consensus 303 ~q~qVik~k-----~~~g~Rv~~tsC~~nrdg~~iAagc~DGSIQ~W~~~~~~v~p~~~vk~AH~~g~~Itsi~FS~dg~ 377 (641)
T KOG0772|consen 303 SQLQVIKTK-----PAGGKRVPVTSCAWNRDGKLIAAGCLDGSIQIWDKGSRTVRPVMKVKDAHLPGQDITSISFSYDGN 377 (641)
T ss_pred hheeEEeec-----cCCCcccCceeeecCCCcchhhhcccCCceeeeecCCcccccceEeeeccCCCCceeEEEeccccc
Confidence 544332222 2334556789999999999999999999999999866555444443 4455556799999999999
Q ss_pred EEEEecCCCCEEEEecCCCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeC------CCcEEEEeCCCCcccccccCc
Q 010390 334 HILSGSSDGNAYVWQVNKPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSD------DYTVRLWSLENSRCSSMRSPS 405 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~~~~~~ 405 (512)
+|++-+.|+++++||++..+.++....+- .-+-+.++|+|+. ++|++|.. .|.+.++|..+-+.+......
T Consensus 378 ~LlSRg~D~tLKvWDLrq~kkpL~~~tgL~t~~~~tdc~FSPd~-kli~TGtS~~~~~~~g~L~f~d~~t~d~v~ki~i~ 456 (641)
T KOG0772|consen 378 YLLSRGFDDTLKVWDLRQFKKPLNVRTGLPTPFPGTDCCFSPDD-KLILTGTSAPNGMTAGTLFFFDRMTLDTVYKIDIS 456 (641)
T ss_pred hhhhccCCCceeeeeccccccchhhhcCCCccCCCCccccCCCc-eEEEecccccCCCCCceEEEEeccceeeEEEecCC
Confidence 99999999999999999987766554443 2356789999999 89998863 478999998888777654433
Q ss_pred cccceeeeeccchh-ccccc
Q 010390 406 SVRRRVMAIPSTEC-RKLFM 424 (512)
Q Consensus 406 ~~~~~~~~~~~~~~-~~~~~ 424 (512)
...+..+.+.+. ..+++
T Consensus 457 --~aSvv~~~WhpkLNQi~~ 474 (641)
T KOG0772|consen 457 --TASVVRCLWHPKLNQIFA 474 (641)
T ss_pred --CceEEEEeecchhhheee
Confidence 334444455553 34443
No 92
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.2e-28 Score=201.47 Aligned_cols=294 Identities=19% Similarity=0.266 Sum_probs=219.9
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
..|+.| ++.|.+||+|+.||.|.|||+.+... -+.+.+|..+|.+++||+||+.|+|++.|..|
T Consensus 26 a~~~~F---s~~G~~lAvGc~nG~vvI~D~~T~~i-------------ar~lsaH~~pi~sl~WS~dgr~LltsS~D~si 89 (405)
T KOG1273|consen 26 AECCQF---SRWGDYLAVGCANGRVVIYDFDTFRI-------------ARMLSAHVRPITSLCWSRDGRKLLTSSRDWSI 89 (405)
T ss_pred cceEEe---ccCcceeeeeccCCcEEEEEccccch-------------hhhhhccccceeEEEecCCCCEeeeecCCcee
Confidence 455555 99999999999999999999987643 56788999999999999999999999999999
Q ss_pred EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390 133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR 212 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (512)
.+||+..|.+++.++ ...+|+...|+|.+.+..++.-.+..-.+-++..+........
T Consensus 90 ~lwDl~~gs~l~rir-f~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d--------------------- 147 (405)
T KOG1273|consen 90 KLWDLLKGSPLKRIR-FDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKD--------------------- 147 (405)
T ss_pred EEEeccCCCceeEEE-ccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCC---------------------
Confidence 999999999998887 6679999999998867776666665566666654221110000
Q ss_pred ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390 213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS 292 (512)
Q Consensus 213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (512)
.-...+....+..|.+.|+++++ |...|.+.++|..+.+++..... .....|..+.++..|+.|+.-
T Consensus 148 --~d~dln~sas~~~fdr~g~yIit-GtsKGkllv~~a~t~e~vas~ri----------ts~~~IK~I~~s~~g~~liiN 214 (405)
T KOG1273|consen 148 --DDGDLNSSASHGVFDRRGKYIIT-GTSKGKLLVYDAETLECVASFRI----------TSVQAIKQIIVSRKGRFLIIN 214 (405)
T ss_pred --CccccccccccccccCCCCEEEE-ecCcceEEEEecchheeeeeeee----------chheeeeEEEEeccCcEEEEe
Confidence 00000112233468889999887 66799999999999887764321 113568899999999999999
Q ss_pred ecCCeEEEEEcccCCC-------CceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCceecccc-
Q 010390 293 CMDHRIYLYNVLQLDK-------GPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHD- 363 (512)
Q Consensus 293 ~~dg~i~i~d~~~~~~-------~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~- 363 (512)
+.|..|+.|+++.... .+...+..........+++|+.+|.|+++|+. ...++||....+.. ++.+.|.+
T Consensus 215 tsDRvIR~ye~~di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dgeYv~a~s~~aHaLYIWE~~~GsL-VKILhG~kg 293 (405)
T KOG1273|consen 215 TSDRVIRTYEISDIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDGEYVCAGSARAHALYIWEKSIGSL-VKILHGTKG 293 (405)
T ss_pred cCCceEEEEehhhhcccCccCCcChhHHHHHHHhhhhhhheeecCCccEEEeccccceeEEEEecCCcce-eeeecCCch
Confidence 9999999999864221 11222222222233456899999999988774 46799999988876 56777776
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
.....+.|+|-. ..+++. ..|.+++|.......-.
T Consensus 294 E~l~DV~whp~r-p~i~si-~sg~v~iw~~~~~enws 328 (405)
T KOG1273|consen 294 EELLDVNWHPVR-PIIASI-ASGVVYIWAVVQVENWS 328 (405)
T ss_pred hheeecccccce-eeeeec-cCCceEEEEeecccchh
Confidence 578899999987 567666 77899999987654333
No 93
>PTZ00420 coronin; Provisional
Probab=99.96 E-value=5e-27 Score=224.47 Aligned_cols=239 Identities=17% Similarity=0.191 Sum_probs=179.3
Q ss_pred EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 126 ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
|+.++.|++|+......+..+.+|.+.|.+++|+|+.+++|++|+.||+|++||+.+.......
T Consensus 50 GG~~gvI~L~~~~r~~~v~~L~gH~~~V~~lafsP~~~~lLASgS~DgtIrIWDi~t~~~~~~~---------------- 113 (568)
T PTZ00420 50 GGLIGAIRLENQMRKPPVIKLKGHTSSILDLQFNPCFSEILASGSEDLTIRVWEIPHNDESVKE---------------- 113 (568)
T ss_pred CCceeEEEeeecCCCceEEEEcCCCCCEEEEEEcCCCCCEEEEEeCCCeEEEEECCCCCccccc----------------
Confidence 6678999999988888888899999999999999985589999999999999999864321100
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
.......+.+|...|.+++|+|++..++++++.|+.|++||+++++.... . .+...|.+++|+++
T Consensus 114 ---i~~p~~~L~gH~~~V~sVaf~P~g~~iLaSgS~DgtIrIWDl~tg~~~~~-----------i-~~~~~V~Slswspd 178 (568)
T PTZ00420 114 ---IKDPQCILKGHKKKISIIDWNPMNYYIMCSSGFDSFVNIWDIENEKRAFQ-----------I-NMPKKLSSLKWNIK 178 (568)
T ss_pred ---cccceEEeecCCCcEEEEEECCCCCeEEEEEeCCCeEEEEECCCCcEEEE-----------E-ecCCcEEEEEECCC
Confidence 00112245578889999999999988876677899999999998775432 1 13456999999999
Q ss_pred CCEEEEEecCCeEEEEEcccCCCCceEeeeeceec---eeEEEEEECCCCCEEEEecCCC----CEEEEecCCCCCCCce
Q 010390 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE---SFYVKSEICPNASHILSGSSDG----NAYVWQVNKPQADPIK 358 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~---~~~~~~~~s~~~~~l~~g~~dg----~i~iw~~~~~~~~~~~ 358 (512)
|.+|++++.|+.|++||+++. ..+..+.+|... ..+....|++++.+|++++.|+ .|+|||++....++..
T Consensus 179 G~lLat~s~D~~IrIwD~Rsg--~~i~tl~gH~g~~~s~~v~~~~fs~d~~~IlTtG~d~~~~R~VkLWDlr~~~~pl~~ 256 (568)
T PTZ00420 179 GNLLSGTCVGKHMHIIDPRKQ--EIASSFHIHDGGKNTKNIWIDGLGGDDNYILSTGFSKNNMREMKLWDLKNTTSALVT 256 (568)
T ss_pred CCEEEEEecCCEEEEEECCCC--cEEEEEecccCCceeEEEEeeeEcCCCCEEEEEEcCCCCccEEEEEECCCCCCceEE
Confidence 999999999999999999874 344556655432 1122335678999999877664 6999999975544443
Q ss_pred ec--cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 359 LK--SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 359 ~~--~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
.. .+.+.+......+++ .++++|+.|+.|++|++..+.+
T Consensus 257 ~~ld~~~~~L~p~~D~~tg-~l~lsGkGD~tIr~~e~~~~~~ 297 (568)
T PTZ00420 257 MSIDNASAPLIPHYDESTG-LIYLIGKGDGNCRYYQHSLGSI 297 (568)
T ss_pred EEecCCccceEEeeeCCCC-CEEEEEECCCeEEEEEccCCcE
Confidence 32 223333334334446 8899999999999999987753
No 94
>KOG0640 consensus mRNA cleavage stimulating factor complex; subunit 1 [RNA processing and modification]
Probab=99.96 E-value=1.2e-28 Score=204.75 Aligned_cols=265 Identities=15% Similarity=0.258 Sum_probs=209.3
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC------------------eeeecccCcCCCEEEEEeeC
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK------------------KCTGALMGHTGSIKSLCSHP 160 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~------------------~~~~~~~~h~~~v~~l~~~~ 160 (512)
.+...+..|+.++.+.+|++||.++++|+.|..|+|.|++.. -.++++..|.+.|+++.|+|
T Consensus 103 yEt~ylt~HK~~cR~aafs~DG~lvATGsaD~SIKildvermlaks~~~em~~~~~qa~hPvIRTlYDH~devn~l~FHP 182 (430)
T KOG0640|consen 103 YETKYLTSHKSPCRAAAFSPDGSLVATGSADASIKILDVERMLAKSKPKEMISGDTQARHPVIRTLYDHVDEVNDLDFHP 182 (430)
T ss_pred cceEEEeecccceeeeeeCCCCcEEEccCCcceEEEeehhhhhhhcchhhhccCCcccCCceEeehhhccCcccceeecc
Confidence 345567889999999999999999999999999999998721 24677888999999999999
Q ss_pred CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee
Q 010390 161 TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA 240 (512)
Q Consensus 161 ~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~ 240 (512)
.. .+|++|+.|++|+++|+......... +......+|.++.|+|.|.++++ |.
T Consensus 183 re-~ILiS~srD~tvKlFDfsK~saKrA~-------------------------K~~qd~~~vrsiSfHPsGefllv-gT 235 (430)
T KOG0640|consen 183 RE-TILISGSRDNTVKLFDFSKTSAKRAF-------------------------KVFQDTEPVRSISFHPSGEFLLV-GT 235 (430)
T ss_pred hh-heEEeccCCCeEEEEecccHHHHHHH-------------------------HHhhccceeeeEeecCCCceEEE-ec
Confidence 88 99999999999999999754332211 22233458999999999999998 66
Q ss_pred cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceec
Q 010390 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIE 320 (512)
Q Consensus 241 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~ 320 (512)
+--.+++||+++.++..... ....|.+.|+++.+++.+++.++++.||.|++||-.. ...+..+......
T Consensus 236 dHp~~rlYdv~T~Qcfvsan--------Pd~qht~ai~~V~Ys~t~~lYvTaSkDG~IklwDGVS--~rCv~t~~~AH~g 305 (430)
T KOG0640|consen 236 DHPTLRLYDVNTYQCFVSAN--------PDDQHTGAITQVRYSSTGSLYVTASKDGAIKLWDGVS--NRCVRTIGNAHGG 305 (430)
T ss_pred CCCceeEEeccceeEeeecC--------cccccccceeEEEecCCccEEEEeccCCcEEeecccc--HHHHHHHHhhcCC
Confidence 77899999999988766543 3567889999999999999999999999999999543 3455555555555
Q ss_pred eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc-----cCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCC
Q 010390 321 SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH-----DGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLE 394 (512)
Q Consensus 321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h-----~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~ 394 (512)
..+++..|..++++|++.+.|..+++|.+.+++.. ..+.|- ..--+...|+... .+++.-. ..+.+.-||-.
T Consensus 306 sevcSa~Ftkn~kyiLsSG~DS~vkLWEi~t~R~l-~~YtGAg~tgrq~~rtqAvFNhtE-dyVl~pDEas~slcsWdaR 383 (430)
T KOG0640|consen 306 SEVCSAVFTKNGKYILSSGKDSTVKLWEISTGRML-KEYTGAGTTGRQKHRTQAVFNHTE-DYVLFPDEASNSLCSWDAR 383 (430)
T ss_pred ceeeeEEEccCCeEEeecCCcceeeeeeecCCceE-EEEecCCcccchhhhhhhhhcCcc-ceEEccccccCceeecccc
Confidence 67888999999999999999999999999998874 333332 1123445576666 4555544 45789999999
Q ss_pred CCcccccc
Q 010390 395 NSRCSSMR 402 (512)
Q Consensus 395 ~~~~~~~~ 402 (512)
++..+...
T Consensus 384 tadr~~l~ 391 (430)
T KOG0640|consen 384 TADRVALL 391 (430)
T ss_pred chhhhhhc
Confidence 98766643
No 95
>KOG0278 consensus Serine/threonine kinase receptor-associated protein [Lipid transport and metabolism]
Probab=99.96 E-value=2.9e-29 Score=202.18 Aligned_cols=255 Identities=19% Similarity=0.304 Sum_probs=212.1
Q ss_pred eeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390 37 TEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW 116 (512)
Q Consensus 37 ~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 116 (512)
...|...-.+.||.+.|.+... +.|....|++..|=+-+|||.-++.. +..+ .|+.-|.+++|
T Consensus 46 g~tgdwigtfeghkgavw~~~l---~~na~~aasaaadftakvw~a~tgde-------------lhsf-~hkhivk~~af 108 (334)
T KOG0278|consen 46 GDTGDWIGTFEGHKGAVWSATL---NKNATRAASAAADFTAKVWDAVTGDE-------------LHSF-EHKHIVKAVAF 108 (334)
T ss_pred CCCCCcEEeeeccCcceeeeec---Cchhhhhhhhcccchhhhhhhhhhhh-------------hhhh-hhhheeeeEEe
Confidence 3456677789999999999888 88888899999999999999877643 4444 58899999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCe-eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKK-CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~-~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
+.|.++|++|+.+..++|+|++..+ +...+.+|.+.|..+.|...+ +.|++.+.|++||+||.+++.....+.
T Consensus 109 ~~ds~~lltgg~ekllrvfdln~p~App~E~~ghtg~Ir~v~wc~eD-~~iLSSadd~tVRLWD~rTgt~v~sL~----- 182 (334)
T KOG0278|consen 109 SQDSNYLLTGGQEKLLRVFDLNRPKAPPKEISGHTGGIRTVLWCHED-KCILSSADDKTVRLWDHRTGTEVQSLE----- 182 (334)
T ss_pred cccchhhhccchHHHhhhhhccCCCCCchhhcCCCCcceeEEEeccC-ceEEeeccCCceEEEEeccCcEEEEEe-----
Confidence 9999999999999999999998764 567889999999999999877 888898999999999999887665442
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
...+|+++.++++|..+.++ ..+.|++||..+...+.....| .
T Consensus 183 -----------------------~~s~VtSlEvs~dG~ilTia--~gssV~Fwdaksf~~lKs~k~P------------~ 225 (334)
T KOG0278|consen 183 -----------------------FNSPVTSLEVSQDGRILTIA--YGSSVKFWDAKSFGLLKSYKMP------------C 225 (334)
T ss_pred -----------------------cCCCCcceeeccCCCEEEEe--cCceeEEeccccccceeeccCc------------c
Confidence 24589999999999988765 4789999999988776543322 3
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
.|.+..++|+...+++|+.|..++.||..+++..... ..+ ...++.++.|+|+|...++|+.||+|+||.+..++.
T Consensus 226 nV~SASL~P~k~~fVaGged~~~~kfDy~TgeEi~~~-nkg--h~gpVhcVrFSPdGE~yAsGSEDGTirlWQt~~~~~ 301 (334)
T KOG0278|consen 226 NVESASLHPKKEFFVAGGEDFKVYKFDYNTGEEIGSY-NKG--HFGPVHCVRFSPDGELYASGSEDGTIRLWQTTPGKT 301 (334)
T ss_pred ccccccccCCCceEEecCcceEEEEEeccCCceeeec-ccC--CCCceEEEEECCCCceeeccCCCceEEEEEecCCCc
Confidence 4889999999999999999999999999875543321 133 346789999999999999999999999999876544
No 96
>KOG0973 consensus Histone transcription regulator HIRA, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning; Transcription]
Probab=99.96 E-value=3.2e-28 Score=234.73 Aligned_cols=275 Identities=15% Similarity=0.229 Sum_probs=213.9
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCC--CCCcccc---ccccccccceeccccCCCcEEE
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRR--KLPSFAC---HRENAEKARISDWVAHQNAIFD 113 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~--~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~ 113 (512)
....+.....|.+.|.||.| +|||++||+|+.|+.|.||+... ....+.. ......-+.+..+.+|.+.|..
T Consensus 58 l~k~l~~m~~h~~sv~CVR~---S~dG~~lAsGSDD~~v~iW~~~~~~~~~~fgs~g~~~~vE~wk~~~~l~~H~~DV~D 134 (942)
T KOG0973|consen 58 LPKHLCTMDDHDGSVNCVRF---SPDGSYLASGSDDRLVMIWERAEIGSGTVFGSTGGAKNVESWKVVSILRGHDSDVLD 134 (942)
T ss_pred cchhheeeccccCceeEEEE---CCCCCeEeeccCcceEEEeeecccCCcccccccccccccceeeEEEEEecCCCccce
Confidence 45667777889999999999 99999999999999999999873 1111111 1112233567888999999999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
++|+|++.+|++++.|++|.|||..+.+.+..+.+|.+.|..+.|.|-| ++|++-+.|++|++|++.+-...+......
T Consensus 135 v~Wsp~~~~lvS~s~DnsViiwn~~tF~~~~vl~~H~s~VKGvs~DP~G-ky~ASqsdDrtikvwrt~dw~i~k~It~pf 213 (942)
T KOG0973|consen 135 VNWSPDDSLLVSVSLDNSVIIWNAKTFELLKVLRGHQSLVKGVSWDPIG-KYFASQSDDRTLKVWRTSDWGIEKSITKPF 213 (942)
T ss_pred eccCCCccEEEEecccceEEEEccccceeeeeeecccccccceEECCcc-CeeeeecCCceEEEEEcccceeeEeeccch
Confidence 9999999999999999999999999999999999999999999999998 999999999999999976533322211100
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC---eEEEEeccCccceecccCCCccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS---IVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg---~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
........+..+.|+|||.+|++..+.++ .+.|.+-.+.+... .+
T Consensus 214 ---------------------~~~~~~T~f~RlSWSPDG~~las~nA~n~~~~~~~IieR~tWk~~~-----------~L 261 (942)
T KOG0973|consen 214 ---------------------EESPLTTFFLRLSWSPDGHHLASPNAVNGGKSTIAIIERGTWKVDK-----------DL 261 (942)
T ss_pred ---------------------hhCCCcceeeecccCCCcCeecchhhccCCcceeEEEecCCceeee-----------ee
Confidence 01122346889999999999998655544 56777666555433 58
Q ss_pred cccccCeeEEEeCCC-----CC------------EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 271 ETRLHGISSLSQDSN-----GV------------FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~-----~~------------~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
.+|..++.++.|+|. .+ .+|+|+.|++|.||.... .+++....... ...|+.++|+|||-
T Consensus 262 vGH~~p~evvrFnP~lfe~~~~ng~~~~~~~~y~i~AvgSqDrSlSVW~T~~--~RPl~vi~~lf-~~SI~DmsWspdG~ 338 (942)
T KOG0973|consen 262 VGHSAPVEVVRFNPKLFERNNKNGTSTQPNCYYCIAAVGSQDRSLSVWNTAL--PRPLFVIHNLF-NKSIVDMSWSPDGF 338 (942)
T ss_pred ecCCCceEEEEeChHHhccccccCCccCCCcceEEEEEecCCccEEEEecCC--CCchhhhhhhh-cCceeeeeEcCCCC
Confidence 899999999999872 11 678999999999999733 34443333221 23588899999999
Q ss_pred EEEEecCCCCEEEEecCCC
Q 010390 334 HILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~~~ 352 (512)
.|++++.||+|.++.++..
T Consensus 339 ~LfacS~DGtV~~i~Fee~ 357 (942)
T KOG0973|consen 339 SLFACSLDGTVALIHFEEK 357 (942)
T ss_pred eEEEEecCCeEEEEEcchH
Confidence 9999999999999998753
No 97
>KOG0647 consensus mRNA export protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.1e-27 Score=198.37 Aligned_cols=271 Identities=17% Similarity=0.288 Sum_probs=206.0
Q ss_pred cCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCC-Ceee-ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 106 AHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEK-KKCT-GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 106 ~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~-~~~~-~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
.-++.|.+|+||| ...+++.++.||+|++|+++. |..+ .....|.++|.+++|+.++ ..+++|+.|+.+++||+.+
T Consensus 25 pP~DsIS~l~FSP~~~~~~~A~SWD~tVR~wevq~~g~~~~ka~~~~~~PvL~v~Wsddg-skVf~g~~Dk~~k~wDL~S 103 (347)
T KOG0647|consen 25 PPEDSISALAFSPQADNLLAAGSWDGTVRIWEVQNSGQLVPKAQQSHDGPVLDVCWSDDG-SKVFSGGCDKQAKLWDLAS 103 (347)
T ss_pred CcccchheeEeccccCceEEecccCCceEEEEEecCCcccchhhhccCCCeEEEEEccCC-ceEEeeccCCceEEEEccC
Confidence 4567899999999 455566899999999999987 3332 3456689999999999998 8999999999999999998
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccC
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
++.. ....|..+|..+.|-+... .++++|+.|.+|++||++....+.+...
T Consensus 104 ~Q~~----------------------------~v~~Hd~pvkt~~wv~~~~~~cl~TGSWDKTlKfWD~R~~~pv~t~~L 155 (347)
T KOG0647|consen 104 GQVS----------------------------QVAAHDAPVKTCHWVPGMNYQCLVTGSWDKTLKFWDTRSSNPVATLQL 155 (347)
T ss_pred CCee----------------------------eeeecccceeEEEEecCCCcceeEecccccceeecccCCCCeeeeeec
Confidence 7543 3458899999999987655 4556689999999999998877765543
Q ss_pred CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
|. .++++.. -..+++++..++.|.+|++++........ ..+..-.+.+++...+.+..+.|+-+
T Consensus 156 Pe------------RvYa~Dv--~~pm~vVata~r~i~vynL~n~~te~k~~--~SpLk~Q~R~va~f~d~~~~alGsiE 219 (347)
T KOG0647|consen 156 PE------------RVYAADV--LYPMAVVATAERHIAVYNLENPPTEFKRI--ESPLKWQTRCVACFQDKDGFALGSIE 219 (347)
T ss_pred cc------------eeeehhc--cCceeEEEecCCcEEEEEcCCCcchhhhh--cCcccceeeEEEEEecCCceEeeeec
Confidence 33 2555444 34578899999999999996643221111 11223346678888888888999999
Q ss_pred CCEEEEecCCCC-CCCceeccccC---------CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCcccccee
Q 010390 342 GNAYVWQVNKPQ-ADPIKLKSHDG---------EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRV 411 (512)
Q Consensus 342 g~i~iw~~~~~~-~~~~~~~~h~~---------~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 411 (512)
|.+.|..++.+. ..-..++.|.. .|++|+|+|.. ..|+|+|.||++.+||-+....+.. .+.+..+|
T Consensus 220 Grv~iq~id~~~~~~nFtFkCHR~~~~~~~~VYaVNsi~FhP~h-gtlvTaGsDGtf~FWDkdar~kLk~--s~~~~qpI 296 (347)
T KOG0647|consen 220 GRVAIQYIDDPNPKDNFTFKCHRSTNSVNDDVYAVNSIAFHPVH-GTLVTAGSDGTFSFWDKDARTKLKT--SETHPQPI 296 (347)
T ss_pred ceEEEEecCCCCccCceeEEEeccCCCCCCceEEecceEeeccc-ceEEEecCCceEEEecchhhhhhhc--cCcCCCcc
Confidence 999999998752 22356777752 58889999987 8999999999999999988776665 34455667
Q ss_pred eeeccchhccccc
Q 010390 412 MAIPSTECRKLFM 424 (512)
Q Consensus 412 ~~~~~~~~~~~~~ 424 (512)
.++.++..+.+++
T Consensus 297 tcc~fn~~G~ifa 309 (347)
T KOG0647|consen 297 TCCSFNRNGSIFA 309 (347)
T ss_pred ceeEecCCCCEEE
Confidence 7767766666664
No 98
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.96 E-value=4.3e-27 Score=215.79 Aligned_cols=283 Identities=17% Similarity=0.272 Sum_probs=228.9
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE-EEEec-C
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD-LCWIK-E 119 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~s~-~ 119 (512)
+-.++.||...|.+|+. . ++..+++++.||++++|+-..++. .....+.+|.+-|.. ++|-+ +
T Consensus 6 ls~~l~gH~~DVr~v~~---~-~~~~i~s~sRd~t~~vw~~~~~~~-----------l~~~~~~~~~g~i~~~i~y~e~~ 70 (745)
T KOG0301|consen 6 LSHELEGHKSDVRAVAV---T-DGVCIISGSRDGTVKVWAKKGKQY-----------LETHAFEGPKGFIANSICYAESD 70 (745)
T ss_pred eEEEeccCccchheeEe---c-CCeEEeecCCCCceeeeeccCccc-----------ccceecccCcceeeccceecccc
Confidence 45678999999999887 3 445799999999999999765432 224567788888888 88876 5
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
+-.|++|+.|.+|.+|...+..+..++.+|...|.+++...++ . +++|+.|.++++|.....
T Consensus 71 ~~~l~~g~~D~~i~v~~~~~~~P~~~LkgH~snVC~ls~~~~~-~-~iSgSWD~TakvW~~~~l---------------- 132 (745)
T KOG0301|consen 71 KGRLVVGGMDTTIIVFKLSQAEPLYTLKGHKSNVCSLSIGEDG-T-LISGSWDSTAKVWRIGEL---------------- 132 (745)
T ss_pred CcceEeecccceEEEEecCCCCchhhhhccccceeeeecCCcC-c-eEecccccceEEecchhh----------------
Confidence 5569999999999999999999999999999999999987765 3 999999999999987532
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
...+.+|...|++++..|++ .++ +|+.|.+|++|.-.+. .. .+.+|...|+.
T Consensus 133 -------------~~~l~gH~asVWAv~~l~e~-~~v-TgsaDKtIklWk~~~~--l~-----------tf~gHtD~VRg 184 (745)
T KOG0301|consen 133 -------------VYSLQGHTASVWAVASLPEN-TYV-TGSADKTIKLWKGGTL--LK-----------TFSGHTDCVRG 184 (745)
T ss_pred -------------hcccCCcchheeeeeecCCC-cEE-eccCcceeeeccCCch--hh-----------hhccchhheee
Confidence 22467899999999999988 344 4778999999986432 22 57889999999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
+++-+++. +++++.||.|+.|++. ...+..+.+| ..++.+++..+++..++++++|++++||+.. .....+
T Consensus 185 L~vl~~~~-flScsNDg~Ir~w~~~---ge~l~~~~gh--tn~vYsis~~~~~~~Ivs~gEDrtlriW~~~---e~~q~I 255 (745)
T KOG0301|consen 185 LAVLDDSH-FLSCSNDGSIRLWDLD---GEVLLEMHGH--TNFVYSISMALSDGLIVSTGEDRTLRIWKKD---ECVQVI 255 (745)
T ss_pred eEEecCCC-eEeecCCceEEEEecc---Cceeeeeecc--ceEEEEEEecCCCCeEEEecCCceEEEeecC---ceEEEE
Confidence 99997754 7788899999999983 3456666666 4677788888899999999999999999876 223444
Q ss_pred ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
.-..-.|+++.+-++| -+++|+.||.||||..+..
T Consensus 256 ~lPttsiWsa~~L~Ng--DIvvg~SDG~VrVfT~~k~ 290 (745)
T KOG0301|consen 256 TLPTTSIWSAKVLLNG--DIVVGGSDGRVRVFTVDKD 290 (745)
T ss_pred ecCccceEEEEEeeCC--CEEEeccCceEEEEEeccc
Confidence 4345589999998887 6889999999999988743
No 99
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=5.8e-27 Score=195.56 Aligned_cols=302 Identities=15% Similarity=0.150 Sum_probs=211.3
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
...++||.+.|++++| +.||++||+++.|+.|+||++++-.. .+.+.++. .---+.-+.+.|.||-+-
T Consensus 79 ~~~LKgH~~~vt~~~F---sSdGK~lat~~~Dr~Ir~w~~~DF~~--------~eHr~~R~-nve~dhpT~V~FapDc~s 146 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAF---SSDGKKLATISGDRSIRLWDVRDFEN--------KEHRCIRQ-NVEYDHPTRVVFAPDCKS 146 (420)
T ss_pred hhhhhccCCceeeeEE---cCCCceeEEEeCCceEEEEecchhhh--------hhhhHhhc-cccCCCceEEEECCCcce
Confidence 4568999999999999 99999999999999999999976321 11111111 111235678999998776
Q ss_pred EE-EEeCCCcEEEEeCCCC---eeee---------cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390 123 IL-TASGDQTIKIWDAEKK---KCTG---------ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 123 l~-s~~~dg~i~iwd~~~~---~~~~---------~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 189 (512)
++ +.-...++++|.+... .... .-+.|.-.|..+-....+ .+|++++.|..|.+|+++ ++.+...
T Consensus 147 ~vv~~~~g~~l~vyk~~K~~dG~~~~~~v~~D~~~f~~kh~v~~i~iGiA~~~-k~imsas~dt~i~lw~lk-Gq~L~~i 224 (420)
T KOG2096|consen 147 VVVSVKRGNKLCVYKLVKKTDGSGSHHFVHIDNLEFERKHQVDIINIGIAGNA-KYIMSASLDTKICLWDLK-GQLLQSI 224 (420)
T ss_pred EEEEEccCCEEEEEEeeecccCCCCcccccccccccchhcccceEEEeecCCc-eEEEEecCCCcEEEEecC-Cceeeee
Confidence 66 4445667999976432 2111 112355566666655444 899999999999999998 4443322
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
......-+..+.+|+|++++++| ..-.|++|.+--.+.-..+ .......
T Consensus 225 ---------------------------dtnq~~n~~aavSP~GRFia~~g-FTpDVkVwE~~f~kdG~fq---ev~rvf~ 273 (420)
T KOG2096|consen 225 ---------------------------DTNQSSNYDAAVSPDGRFIAVSG-FTPDVKVWEPIFTKDGTFQ---EVKRVFS 273 (420)
T ss_pred ---------------------------ccccccccceeeCCCCcEEEEec-CCCCceEEEEEeccCcchh---hhhhhhe
Confidence 22233556778899999999987 5778999986422110000 0001116
Q ss_pred ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC-----CCCceEee--eeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL-----DKGPIQHF--SGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~~~~~~--~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
+.+|...|..++|+++...+++.+.||++++||+.-. ....++.. ..+........++.+|+|+.||... ..
T Consensus 274 LkGH~saV~~~aFsn~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g~~lA~s~-gs 352 (420)
T KOG2096|consen 274 LKGHQSAVLAAAFSNSSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSGDSLAVSF-GS 352 (420)
T ss_pred eccchhheeeeeeCCCcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCCcEEEeec-CC
Confidence 8899999999999999999999999999999997321 11111111 1122223345799999999998765 45
Q ss_pred CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.+++|..++++........|...|.+++|+++| ++++|+|+ ..+++..
T Consensus 353 ~l~~~~se~g~~~~~~e~~h~~~Is~is~~~~g-~~~atcGd-r~vrv~~ 400 (420)
T KOG2096|consen 353 DLKVFASEDGKDYPELEDIHSTTISSISYSSDG-KYIATCGD-RYVRVIR 400 (420)
T ss_pred ceEEEEcccCccchhHHHhhcCceeeEEecCCC-cEEeeecc-eeeeeec
Confidence 699999998877656667899999999999999 89999874 5677665
No 100
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.96 E-value=6.8e-27 Score=214.41 Aligned_cols=325 Identities=18% Similarity=0.309 Sum_probs=236.1
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccc-------c------c-cc----ccee
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRE-------N------A-EK----ARIS 102 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~-------~------~-~~----~~~~ 102 (512)
....++.||++.|.+|+|.....+.-+||+++.|..||||.+.-.........+ + . +. ..-.
T Consensus 182 ~~v~el~GH~DWIrsl~f~~~~~~~~~laS~SQD~yIRiW~i~~~~~~~~~~~e~~~t~~~~~~~f~~l~~i~~~is~ea 261 (764)
T KOG1063|consen 182 ARVAELEGHTDWIRSLAFARLGGDDLLLASSSQDRYIRIWRIVLGDDEDSNEREDSLTTLSNLPVFMILEEIQYRISFEA 261 (764)
T ss_pred eEEEEeeccchhhhhhhhhccCCCcEEEEecCCceEEEEEEEEecCCccccccccccccccCCceeeeeeeEEEEEehhh
Confidence 567789999999999999776666669999999999999986533211100000 0 0 00 0013
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcE
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSF 175 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i 175 (512)
.+.||++.|+++.|+|.+..|++++.|.++.+|...+.. .+....+......+..|+|++ +.+++-+.-|..
T Consensus 262 ll~GHeDWV~sv~W~p~~~~LLSASaDksmiiW~pd~~tGiWv~~vRlGe~gg~a~GF~g~lw~~n~-~~ii~~g~~Gg~ 340 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWWHPEGLDLLSASADKSMIIWKPDENTGIWVDVVRLGEVGGSAGGFWGGLWSPNS-NVIIAHGRTGGF 340 (764)
T ss_pred hhcCcccceEEEEEccchhhheecccCcceEEEecCCccceEEEEEEeecccccccceeeEEEcCCC-CEEEEecccCcE
Confidence 345999999999999999999999999999999876541 223334455668889999988 889999999999
Q ss_pred EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390 176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA 255 (512)
Q Consensus 176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~ 255 (512)
++|...... .........+|...|.+++|+|.|.+++++| .|.+-++|-.-..+.
T Consensus 341 hlWkt~d~~------------------------~w~~~~~iSGH~~~V~dv~W~psGeflLsvs-~DQTTRlFa~wg~q~ 395 (764)
T KOG1063|consen 341 HLWKTKDKT------------------------FWTQEPVISGHVDGVKDVDWDPSGEFLLSVS-LDQTTRLFARWGRQQ 395 (764)
T ss_pred EEEeccCcc------------------------ceeeccccccccccceeeeecCCCCEEEEec-cccceeeeccccccc
Confidence 999832211 0111224457888999999999999888876 577666653220000
Q ss_pred e--------------------e---------------cc---------------------------------------cC
Q 010390 256 Q--------------------I---------------TQ---------------------------------------AW 261 (512)
Q Consensus 256 ~--------------------~---------------~~---------------------------------------~~ 261 (512)
. . .+ ..
T Consensus 396 ~wHEiaRPQiHGyDl~c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~ 475 (764)
T KOG1063|consen 396 EWHEIARPQIHGYDLTCLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFF 475 (764)
T ss_pred ceeeecccccccccceeeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCc
Confidence 0 0 00 00
Q ss_pred C-------C------------------c------------cccccccccccCeeEEEeCCCCCEEEEEecC-----CeEE
Q 010390 262 P-------H------------------A------------ESSSAKETRLHGISSLSQDSNGVFLTASCMD-----HRIY 299 (512)
Q Consensus 262 ~-------~------------------~------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-----g~i~ 299 (512)
+ . + .....+.+|...|++++.+|+++++++++.. ..|+
T Consensus 476 ~~e~~~G~~~~~~~et~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~ 555 (764)
T KOG1063|consen 476 PGETNTGGEAAVCAETPLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIR 555 (764)
T ss_pred ccccccccccceeeecccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEE
Confidence 0 0 0 0011356777889999999999999999865 4699
Q ss_pred EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC---ceeccccCCeEEEEeCCCCC
Q 010390 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP---IKLKSHDGEVTAVNWCPNEA 376 (512)
Q Consensus 300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~---~~~~~h~~~v~~v~~~~~~~ 376 (512)
+|+..+.. ....+.+|. -.++.++|||||++|++.+.|.++.+|......... .....|..-|.++.|+|++
T Consensus 556 lw~t~~W~--~~~~L~~Hs--LTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde- 630 (764)
T KOG1063|consen 556 LWNTANWL--QVQELEGHS--LTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDE- 630 (764)
T ss_pred EEeccchh--hhheecccc--eEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCccc-
Confidence 99976643 334566664 458899999999999999999999999886543322 3367899999999999999
Q ss_pred CeEEEEeCCCcEEEEeCCCC
Q 010390 377 GKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 377 ~~l~s~~~dg~i~vwd~~~~ 396 (512)
.+++|+|.|.+|+||.....
T Consensus 631 ~~FaTaSRDK~VkVW~~~~~ 650 (764)
T KOG1063|consen 631 KYFATASRDKKVKVWEEPDL 650 (764)
T ss_pred ceeEEecCCceEEEEeccCc
Confidence 88999999999999999988
No 101
>KOG0299 consensus U3 snoRNP-associated protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=1.7e-27 Score=208.25 Aligned_cols=254 Identities=17% Similarity=0.291 Sum_probs=207.1
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
++|...+.+++. |+||+|||+|+.|..|.||+.++.+. +..+.+|.+.|.+++|-.....|+++
T Consensus 199 ~~h~keil~~av---S~Dgkylatgg~d~~v~Iw~~~t~eh-------------v~~~~ghr~~V~~L~fr~gt~~lys~ 262 (479)
T KOG0299|consen 199 KGHVKEILTLAV---SSDGKYLATGGRDRHVQIWDCDTLEH-------------VKVFKGHRGAVSSLAFRKGTSELYSA 262 (479)
T ss_pred ccccceeEEEEE---cCCCcEEEecCCCceEEEecCcccch-------------hhcccccccceeeeeeecCccceeee
Confidence 388888999998 99999999999999999999998754 77799999999999999888899999
Q ss_pred eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
+.|++|++|+++....+.++.+|.+.|.+|...... ..+.+|+.|+++++|++.....+
T Consensus 263 s~Drsvkvw~~~~~s~vetlyGHqd~v~~IdaL~re-R~vtVGgrDrT~rlwKi~eesql-------------------- 321 (479)
T KOG0299|consen 263 SADRSVKVWSIDQLSYVETLYGHQDGVLGIDALSRE-RCVTVGGRDRTVRLWKIPEESQL-------------------- 321 (479)
T ss_pred ecCCceEEEehhHhHHHHHHhCCccceeeechhccc-ceEEeccccceeEEEecccccee--------------------
Confidence 999999999999999999999999999999988765 67777779999999999543221
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccc-cccccccCeeEEEeCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSS-AKETRLHGISSLSQDSN 285 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~-~~~~~~~~i~~~~~~~~ 285 (512)
.+.++.+.+.|++|..+.. ++ +|+.+|.|.+|++.+.+.+.....+|..... ....+..+|++++..|.
T Consensus 322 --------ifrg~~~sidcv~~In~~H-fv-sGSdnG~IaLWs~~KKkplf~~~~AHgv~~~~~~~~~~~Witsla~i~~ 391 (479)
T KOG0299|consen 322 --------IFRGGEGSIDCVAFINDEH-FV-SGSDNGSIALWSLLKKKPLFTSRLAHGVIPELDPVNGNFWITSLAVIPG 391 (479)
T ss_pred --------eeeCCCCCeeeEEEecccc-ee-eccCCceEEEeeecccCceeEeeccccccCCccccccccceeeeEeccc
Confidence 3456778999999986654 33 4889999999999999988887766653321 12233358999999999
Q ss_pred CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEe
Q 010390 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQ 348 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~ 348 (512)
..++++|+.+|.|++|.+..+- ..+..+..-....+|+.++|+++|++|++| +....+--|-
T Consensus 392 sdL~asGS~~G~vrLW~i~~g~-r~i~~l~~ls~~GfVNsl~f~~sgk~ivagiGkEhRlGRW~ 454 (479)
T KOG0299|consen 392 SDLLASGSWSGCVRLWKIEDGL-RAINLLYSLSLVGFVNSLAFSNSGKRIVAGIGKEHRLGRWW 454 (479)
T ss_pred CceEEecCCCCceEEEEecCCc-cccceeeecccccEEEEEEEccCCCEEEEecccccccceee
Confidence 9999999999999999997652 244445555567889999999999977665 3344444443
No 102
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.96 E-value=6.3e-27 Score=218.95 Aligned_cols=351 Identities=15% Similarity=0.193 Sum_probs=261.3
Q ss_pred eeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe
Q 010390 38 EIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI 117 (512)
Q Consensus 38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s 117 (512)
..+.++.++++|...|+++.- +|-=+.+|.|..+|.|.|++++..+. +..++...+.|++++|.
T Consensus 190 rt~K~v~~f~~~~s~IT~ieq---sPaLDVVaiG~~~G~ViifNlK~dki-------------l~sFk~d~g~VtslSFr 253 (910)
T KOG1539|consen 190 RTGKVVYTFQEFFSRITAIEQ---SPALDVVAIGLENGTVIIFNLKFDKI-------------LMSFKQDWGRVTSLSFR 253 (910)
T ss_pred ccCcEEEEecccccceeEecc---CCcceEEEEeccCceEEEEEcccCcE-------------EEEEEccccceeEEEec
Confidence 345677788999999999888 99999999999999999999987643 77777557999999999
Q ss_pred cCCCEE-EEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc------
Q 010390 118 KEDTNI-LTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN------ 189 (512)
Q Consensus 118 ~~~~~l-~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~------ 189 (512)
-||..+ ++|+..|.+.+||++..+.+..+. .|.+.|..+.|.|.. ..+++++.|..+++|=.+++.-....
T Consensus 254 tDG~p~las~~~~G~m~~wDLe~kkl~~v~~nah~~sv~~~~fl~~e-pVl~ta~~DnSlk~~vfD~~dg~pR~LR~R~G 332 (910)
T KOG1539|consen 254 TDGNPLLASGRSNGDMAFWDLEKKKLINVTRNAHYGSVTGATFLPGE-PVLVTAGADNSLKVWVFDSGDGVPRLLRSRGG 332 (910)
T ss_pred cCCCeeEEeccCCceEEEEEcCCCeeeeeeeccccCCcccceecCCC-ceEeeccCCCceeEEEeeCCCCcchheeeccC
Confidence 998765 567777999999999988877765 788999999999966 89999999999998855533221100
Q ss_pred ------c------ccceeeeccc------------------cc----------ccc------ccc---------------
Q 010390 190 ------C------AESFVFSSAV------------------VK----------GAH------LLS--------------- 208 (512)
Q Consensus 190 ------~------~~~~~~~~~~------------------~~----------~~~------~~~--------------- 208 (512)
+ ...++.+... .. +.. ..+
T Consensus 333 Hs~Pp~~irfy~~~g~~ilsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~ 412 (910)
T KOG1539|consen 333 HSAPPSCIRFYGSQGHFILSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWD 412 (910)
T ss_pred CCCCchheeeeccCcEEEEecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhc
Confidence 0 0000000000 00 000 000
Q ss_pred -----------------cccc-------ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390 209 -----------------QSKR-------VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA 264 (512)
Q Consensus 209 -----------------~~~~-------~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 264 (512)
.... ...++.....+++++.++.|+..+. |+..|.|-+|++.++.......
T Consensus 413 Nv~~~h~~~~~~~tW~~~n~~~G~~~L~~~~~~~~~~~~~av~vs~CGNF~~I-G~S~G~Id~fNmQSGi~r~sf~---- 487 (910)
T KOG1539|consen 413 NVITAHKGKRSAYTWNFRNKTSGRHVLDPKRFKKDDINATAVCVSFCGNFVFI-GYSKGTIDRFNMQSGIHRKSFG---- 487 (910)
T ss_pred ceeEEecCcceEEEEeccCcccccEEecCccccccCcceEEEEEeccCceEEE-eccCCeEEEEEcccCeeecccc----
Confidence 0000 0011223467889999999988877 7789999999999987655432
Q ss_pred cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
....|..+|+.++.+.-++.+++++.+|.+.+||..... .+..+ .....+.++.++.....++.+..|-.|
T Consensus 488 ----~~~ah~~~V~gla~D~~n~~~vsa~~~Gilkfw~f~~k~--l~~~l---~l~~~~~~iv~hr~s~l~a~~~ddf~I 558 (910)
T KOG1539|consen 488 ----DSPAHKGEVTGLAVDGTNRLLVSAGADGILKFWDFKKKV--LKKSL---RLGSSITGIVYHRVSDLLAIALDDFSI 558 (910)
T ss_pred ----cCccccCceeEEEecCCCceEEEccCcceEEEEecCCcc--eeeee---ccCCCcceeeeeehhhhhhhhcCceeE
Confidence 245788999999999999999999999999999986533 22222 223345667788888889999999999
Q ss_pred EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhccccc
Q 010390 345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFM 424 (512)
Q Consensus 345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (512)
+++|..+.+. .+.+.+|.+.|++++||||| ++|++++.|++|++||+.++.++..+.... ....+.++|.+.+++
T Consensus 559 ~vvD~~t~kv-vR~f~gh~nritd~~FS~Dg-rWlisasmD~tIr~wDlpt~~lID~~~vd~---~~~sls~SPngD~LA 633 (910)
T KOG1539|consen 559 RVVDVVTRKV-VREFWGHGNRITDMTFSPDG-RWLISASMDSTIRTWDLPTGTLIDGLLVDS---PCTSLSFSPNGDFLA 633 (910)
T ss_pred EEEEchhhhh-hHHhhccccceeeeEeCCCC-cEEEEeecCCcEEEEeccCcceeeeEecCC---cceeeEECCCCCEEE
Confidence 9999988765 57899999999999999999 999999999999999999999988754432 333445556555554
No 103
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.96 E-value=6.6e-27 Score=193.18 Aligned_cols=314 Identities=15% Similarity=0.197 Sum_probs=230.7
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccc--ccccccccceeccccCCCcEEEEEEec-CCCEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC--HRENAEKARISDWVAHQNAIFDLCWIK-EDTNI 123 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~--~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l 123 (512)
+.|.+.|+++..- .-.|+|+++|+.||.|.|||++....-... ..+..-......-.+|+-.|.++.|.| |.-.+
T Consensus 40 r~HgGsvNsL~id--~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmF 117 (397)
T KOG4283|consen 40 RPHGGSVNSLQID--LTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMF 117 (397)
T ss_pred ccCCCccceeeec--cccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCcee
Confidence 4588999999994 337899999999999999999864311000 000000011223357888999999999 66678
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
.+++.|.+++|||.++.+....|. -.+.|.+-+++|-.. .++|+|..|-.|++-|+..+....
T Consensus 118 tssSFDhtlKVWDtnTlQ~a~~F~-me~~VYshamSp~a~sHcLiA~gtr~~~VrLCDi~SGs~sH-------------- 182 (397)
T KOG4283|consen 118 TSSSFDHTLKVWDTNTLQEAVDFK-MEGKVYSHAMSPMAMSHCLIAAGTRDVQVRLCDIASGSFSH-------------- 182 (397)
T ss_pred ecccccceEEEeecccceeeEEee-cCceeehhhcChhhhcceEEEEecCCCcEEEEeccCCccee--------------
Confidence 899999999999999998877776 456788888887432 478888888899999999776543
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC----ccccccccccccCe
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH----AESSSAKETRLHGI 277 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~----~~~~~~~~~~~~~i 277 (512)
.+.+|...|.++.|+|...+++++|+.||.|++||++...........+ +........|.+.+
T Consensus 183 -------------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRrasgcf~~lD~hn~k~~p~~~~n~ah~gkv 249 (397)
T KOG4283|consen 183 -------------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRASGCFRVLDQHNTKRPPILKTNTAHYGKV 249 (397)
T ss_pred -------------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeecccceeEEeecccCccCcccccccccccee
Confidence 6678999999999999999999999999999999999763222211111 11112356788899
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee--eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS--GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 355 (512)
..++|..++.++++.+.|..+++|+...+........+ ......+-..+. +.+...++---.++.+.++++-.+..
T Consensus 250 ngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~~~-~~~s~vfv~~p~~~~lall~~~sgs~- 327 (397)
T KOG4283|consen 250 NGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVHIQ-SMDSDVFVLFPNDGSLALLNLLEGSF- 327 (397)
T ss_pred eeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEEEe-ecccceEEEEecCCeEEEEEccCceE-
Confidence 99999999999999999999999998776543322111 111111111122 33333444444458899999988776
Q ss_pred CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
+..+..|-..|.+.++-|+- +...+|..|+.|..|-.
T Consensus 328 ir~l~~h~k~i~c~~~~~~f-q~~~tg~~d~ni~~w~p 364 (397)
T KOG4283|consen 328 VRRLSTHLKRINCAAYRPDF-EQCFTGDMNGNIYMWSP 364 (397)
T ss_pred EEeeecccceeeEEeecCch-hhhhccccCCccccccc
Confidence 57888998899999999998 89999999999999987
No 104
>KOG0305 consensus Anaphase promoting complex, Cdc20, Cdh1, and Ama1 subunits [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=99.96 E-value=3.2e-27 Score=216.42 Aligned_cols=242 Identities=18% Similarity=0.272 Sum_probs=202.8
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecccc-CCCcEEEEEEecCCCEEEEEe
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVA-HQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~-h~~~V~~l~~s~~~~~l~s~~ 127 (512)
+++.|++|.| +++|++||+|..+|.|.|||..... .+..+.+ |...|-+++|. +..+.+|+
T Consensus 216 ~~~~vtSv~w---s~~G~~LavG~~~g~v~iwD~~~~k-------------~~~~~~~~h~~rvg~laW~--~~~lssGs 277 (484)
T KOG0305|consen 216 GEELVTSVKW---SPDGSHLAVGTSDGTVQIWDVKEQK-------------KTRTLRGSHASRVGSLAWN--SSVLSSGS 277 (484)
T ss_pred CCCceEEEEE---CCCCCEEEEeecCCeEEEEehhhcc-------------ccccccCCcCceeEEEecc--CceEEEec
Confidence 3888999999 9999999999999999999987653 3666777 99999999997 67888999
Q ss_pred CCCcEEEEeCCCCeeeec-ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGA-LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~-~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
.|+.|..+|+...+.... +.+|...|..+.|++++ .++|+|+.|+.+.|||......+
T Consensus 278 r~~~I~~~dvR~~~~~~~~~~~H~qeVCgLkws~d~-~~lASGgnDN~~~Iwd~~~~~p~-------------------- 336 (484)
T KOG0305|consen 278 RDGKILNHDVRISQHVVSTLQGHRQEVCGLKWSPDG-NQLASGGNDNVVFIWDGLSPEPK-------------------- 336 (484)
T ss_pred CCCcEEEEEEecchhhhhhhhcccceeeeeEECCCC-CeeccCCCccceEeccCCCcccc--------------------
Confidence 999999999998876555 88999999999999998 99999999999999999544332
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEe--ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATAS--AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
..+..|...|.+++|+|-...++++| +.|+.|++||..++..+.. ......|.+|.|++
T Consensus 337 -------~~~~~H~aAVKA~awcP~q~~lLAsGGGs~D~~i~fwn~~~g~~i~~------------vdtgsQVcsL~Wsk 397 (484)
T KOG0305|consen 337 -------FTFTEHTAAVKALAWCPWQSGLLATGGGSADRCIKFWNTNTGARIDS------------VDTGSQVCSLIWSK 397 (484)
T ss_pred -------EEEeccceeeeEeeeCCCccCceEEcCCCcccEEEEEEcCCCcEecc------------cccCCceeeEEEcC
Confidence 25668899999999999766665544 4689999999998887643 33345699999999
Q ss_pred CCCEEEEE--ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 285 NGVFLTAS--CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 285 ~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
..+-|+++ ..++.|.||+..+ ...+..+.+|. ..+..++++|||..+++|+.|.++++|++-..
T Consensus 398 ~~kEi~sthG~s~n~i~lw~~ps--~~~~~~l~gH~--~RVl~la~SPdg~~i~t~a~DETlrfw~~f~~ 463 (484)
T KOG0305|consen 398 KYKELLSTHGYSENQITLWKYPS--MKLVAELLGHT--SRVLYLALSPDGETIVTGAADETLRFWNLFDE 463 (484)
T ss_pred CCCEEEEecCCCCCcEEEEeccc--cceeeeecCCc--ceeEEEEECCCCCEEEEecccCcEEeccccCC
Confidence 98766654 3678999999866 44566666765 44888999999999999999999999998764
No 105
>KOG1036 consensus Mitotic spindle checkpoint protein BUB3, WD repeat superfamily [Cell cycle control, cell division, chromosome partitioning]
Probab=99.96 E-value=8.7e-27 Score=193.97 Aligned_cols=274 Identities=18% Similarity=0.264 Sum_probs=213.6
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
-+..|.++.|+|.+..|+.++.||++++||+........+. |..++.+.+|.++ ..+++|+.||.|+.+|+.++...
T Consensus 12 P~d~IS~v~f~~~~~~LLvssWDgslrlYdv~~~~l~~~~~-~~~plL~c~F~d~--~~~~~G~~dg~vr~~Dln~~~~~ 88 (323)
T KOG1036|consen 12 PEDGISSVKFSPSSSDLLVSSWDGSLRLYDVPANSLKLKFK-HGAPLLDCAFADE--STIVTGGLDGQVRRYDLNTGNED 88 (323)
T ss_pred ChhceeeEEEcCcCCcEEEEeccCcEEEEeccchhhhhhee-cCCceeeeeccCC--ceEEEeccCceEEEEEecCCcce
Confidence 36789999999999999999999999999999887666666 8899999999874 68999999999999999877543
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
.+..|...+.|+.+.+....+++ |+.|++|++||.+........
T Consensus 89 ----------------------------~igth~~~i~ci~~~~~~~~vIs-gsWD~~ik~wD~R~~~~~~~~------- 132 (323)
T KOG1036|consen 89 ----------------------------QIGTHDEGIRCIEYSYEVGCVIS-GSWDKTIKFWDPRNKVVVGTF------- 132 (323)
T ss_pred ----------------------------eeccCCCceEEEEeeccCCeEEE-cccCccEEEEecccccccccc-------
Confidence 34478889999999987777776 669999999999974433221
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
.....|.++... +..|++|+.+..+.+||+++..... ........-.+.++++-|++.-.++++-||.|.+
T Consensus 133 -----d~~kkVy~~~v~--g~~LvVg~~~r~v~iyDLRn~~~~~--q~reS~lkyqtR~v~~~pn~eGy~~sSieGRVav 203 (323)
T KOG1036|consen 133 -----DQGKKVYCMDVS--GNRLVVGTSDRKVLIYDLRNLDEPF--QRRESSLKYQTRCVALVPNGEGYVVSSIEGRVAV 203 (323)
T ss_pred -----ccCceEEEEecc--CCEEEEeecCceEEEEEcccccchh--hhccccceeEEEEEEEecCCCceEEEeecceEEE
Confidence 122357777764 6689999999999999998865433 2223334456778999999888999999999988
Q ss_pred EecCCCC---CCCceecccc---------CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeee
Q 010390 347 WQVNKPQ---ADPIKLKSHD---------GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAI 414 (512)
Q Consensus 347 w~~~~~~---~~~~~~~~h~---------~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 414 (512)
=.++... .....+..|. -+|++++|+|-. ..|+||+.||.|.+||+.+.+.+..+... ..
T Consensus 204 E~~d~s~~~~skkyaFkCHr~~~~~~~~~yPVNai~Fhp~~-~tfaTgGsDG~V~~Wd~~~rKrl~q~~~~--~~----- 275 (323)
T KOG1036|consen 204 EYFDDSEEAQSKKYAFKCHRLSEKDTEIIYPVNAIAFHPIH-GTFATGGSDGIVNIWDLFNRKRLKQLAKY--ET----- 275 (323)
T ss_pred EccCCchHHhhhceeEEeeecccCCceEEEEeceeEecccc-ceEEecCCCceEEEccCcchhhhhhccCC--CC-----
Confidence 7666541 2234667774 279999999997 89999999999999999999887764432 11
Q ss_pred ccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCC
Q 010390 415 PSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPK 454 (512)
Q Consensus 415 ~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 454 (512)
.+. .++|+-||..+++++...-
T Consensus 276 -----------------SI~-slsfs~dG~~LAia~sy~y 297 (323)
T KOG1036|consen 276 -----------------SIS-SLSFSMDGSLLAIASSYQY 297 (323)
T ss_pred -----------------ceE-EEEeccCCCeEEEEechhh
Confidence 122 5678888888888755553
No 106
>KOG0288 consensus WD40 repeat protein TipD [General function prediction only]
Probab=99.96 E-value=1.6e-28 Score=211.73 Aligned_cols=256 Identities=16% Similarity=0.269 Sum_probs=207.4
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI 177 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 177 (512)
....+..|.+.|..+.|-++...|++|+.|..|++|++...+ .+.++.+..+.|+++.|.+++ ..+++++.|+.+++
T Consensus 167 ~~~~ld~h~gev~~v~~l~~sdtlatgg~Dr~Ik~W~v~~~k~~~~~tLaGs~g~it~~d~d~~~-~~~iAas~d~~~r~ 245 (459)
T KOG0288|consen 167 ALFVLDAHEGEVHDVEFLRNSDTLATGGSDRIIKLWNVLGEKSELISTLAGSLGNITSIDFDSDN-KHVIAASNDKNLRL 245 (459)
T ss_pred hhhhhhccccccceeEEccCcchhhhcchhhhhhhhhcccchhhhhhhhhccCCCcceeeecCCC-ceEEeecCCCceee
Confidence 355678899999999999999999999999999999987776 677888888999999999988 88899999999999
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
|++...+... .+.+|...|+++.|...... +++|+.|.+|++||+....+..
T Consensus 246 Wnvd~~r~~~---------------------------TLsGHtdkVt~ak~~~~~~~-vVsgs~DRtiK~WDl~k~~C~k 297 (459)
T KOG0288|consen 246 WNVDSLRLRH---------------------------TLSGHTDKVTAAKFKLSHSR-VVSGSADRTIKLWDLQKAYCSK 297 (459)
T ss_pred eeccchhhhh---------------------------hhcccccceeeehhhccccc-eeeccccchhhhhhhhhhheec
Confidence 9998765444 66789999999999887776 5558899999999999877665
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
+... ...+..+..+ ...+++|..|++|++||++.... ......+ +.++++..++++..|.+
T Consensus 298 t~l~------------~S~cnDI~~~--~~~~~SgH~DkkvRfwD~Rs~~~--~~sv~~g---g~vtSl~ls~~g~~lLs 358 (459)
T KOG0288|consen 298 TVLP------------GSQCNDIVCS--ISDVISGHFDKKVRFWDIRSADK--TRSVPLG---GRVTSLDLSMDGLELLS 358 (459)
T ss_pred cccc------------cccccceEec--ceeeeecccccceEEEeccCCce--eeEeecC---cceeeEeeccCCeEEee
Confidence 4321 1234555554 56788999999999999877543 3333322 35788999999999999
Q ss_pred ecCCCCEEEEecCCCCCCCceeccc----cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCc
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSH----DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPS 405 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h----~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 405 (512)
.+.|.++.+.|+++.... ..+.+. ....+.+.|||++ .|+++||.||.|+||++.++++.......
T Consensus 359 ssRDdtl~viDlRt~eI~-~~~sA~g~k~asDwtrvvfSpd~-~YvaAGS~dgsv~iW~v~tgKlE~~l~~s 428 (459)
T KOG0288|consen 359 SSRDDTLKVIDLRTKEIR-QTFSAEGFKCASDWTRVVFSPDG-SYVAAGSADGSVYIWSVFTGKLEKVLSLS 428 (459)
T ss_pred ecCCCceeeeecccccEE-EEeeccccccccccceeEECCCC-ceeeeccCCCcEEEEEccCceEEEEeccC
Confidence 999999999999987642 232211 2348899999999 89999999999999999999988875543
No 107
>KOG0274 consensus Cdc4 and related F-box and WD-40 proteins [General function prediction only]
Probab=99.96 E-value=6.5e-27 Score=222.97 Aligned_cols=261 Identities=21% Similarity=0.294 Sum_probs=206.5
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
...+.||.+.|.++++ ..-+++|++|+.|.++++||..++.. ...+.+|.+.|.++.. ...+
T Consensus 242 ~~~l~GH~g~V~~l~~---~~~~~~lvsgS~D~t~rvWd~~sg~C-------------~~~l~gh~stv~~~~~--~~~~ 303 (537)
T KOG0274|consen 242 LTRLVGHFGGVWGLAF---PSGGDKLVSGSTDKTERVWDCSTGEC-------------THSLQGHTSSVRCLTI--DPFL 303 (537)
T ss_pred EeeccCCCCCceeEEE---ecCCCEEEEEecCCcEEeEecCCCcE-------------EEEecCCCceEEEEEc--cCce
Confidence 3349999999999999 44688999999999999999988855 8888999999999987 4567
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
+++|+.|.+|++|+++++.++..+.+|.++|+++... + .++++|+.|++|++||+.+++++.
T Consensus 304 ~~sgs~D~tVkVW~v~n~~~l~l~~~h~~~V~~v~~~--~-~~lvsgs~d~~v~VW~~~~~~cl~--------------- 365 (537)
T KOG0274|consen 304 LVSGSRDNTVKVWDVTNGACLNLLRGHTGPVNCVQLD--E-PLLVSGSYDGTVKVWDPRTGKCLK--------------- 365 (537)
T ss_pred EeeccCCceEEEEeccCcceEEEeccccccEEEEEec--C-CEEEEEecCceEEEEEhhhceeee---------------
Confidence 8899999999999999999999999999999999997 3 899999999999999999666544
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc-cceecccCCCccccccccccccCeeEEE
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL-KAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~-~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
.+.+|...|.++.+... ..++ +|+.|+.|++||+++. ++.. .+..|..-+..+.
T Consensus 366 ------------sl~gH~~~V~sl~~~~~-~~~~-Sgs~D~~IkvWdl~~~~~c~~-----------tl~~h~~~v~~l~ 420 (537)
T KOG0274|consen 366 ------------SLSGHTGRVYSLIVDSE-NRLL-SGSLDTTIKVWDLRTKRKCIH-----------TLQGHTSLVSSLL 420 (537)
T ss_pred ------------eecCCcceEEEEEecCc-ceEE-eeeeccceEeecCCchhhhhh-----------hhcCCcccccccc
Confidence 66789999999988765 4454 4778999999999998 5554 4566666665544
Q ss_pred eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc
Q 010390 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS 361 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~ 361 (512)
+ .+++|++++.|++|++||.... ..+..+.+. ....+..+++. ...+++++.||.+++||++++......+..
T Consensus 421 ~--~~~~Lvs~~aD~~Ik~WD~~~~--~~~~~~~~~-~~~~v~~l~~~--~~~il~s~~~~~~~l~dl~~~~~~~~l~~~ 493 (537)
T KOG0274|consen 421 L--RDNFLVSSSADGTIKLWDAEEG--ECLRTLEGR-HVGGVSALALG--KEEILCSSDDGSVKLWDLRSGTLIRTLLST 493 (537)
T ss_pred c--ccceeEeccccccEEEeecccC--ceeeeeccC-CcccEEEeecC--cceEEEEecCCeeEEEecccCchhhhhhhc
Confidence 4 5779999999999999998764 445555553 12334445544 577888999999999999998774333232
Q ss_pred ccCCeEEEEe
Q 010390 362 HDGEVTAVNW 371 (512)
Q Consensus 362 h~~~v~~v~~ 371 (512)
.......+++
T Consensus 494 ~~~~~~~~~~ 503 (537)
T KOG0274|consen 494 DLGATWGVAP 503 (537)
T ss_pred cccccccccc
Confidence 2334444444
No 108
>KOG0275 consensus Conserved WD40 repeat-containing protein [General function prediction only]
Probab=99.96 E-value=4.7e-28 Score=202.55 Aligned_cols=253 Identities=13% Similarity=0.219 Sum_probs=206.6
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--------ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--------LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI 177 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--------~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 177 (512)
+.++.+.|..|+|||++|++|+.||.|.+||..+|+.... +.-+..+|.|++|+.+. .++++|+.||.|++
T Consensus 211 g~KSh~EcA~FSPDgqyLvsgSvDGFiEVWny~~GKlrKDLkYQAqd~fMMmd~aVlci~FSRDs-EMlAsGsqDGkIKv 289 (508)
T KOG0275|consen 211 GQKSHVECARFSPDGQYLVSGSVDGFIEVWNYTTGKLRKDLKYQAQDNFMMMDDAVLCISFSRDS-EMLASGSQDGKIKV 289 (508)
T ss_pred ccccchhheeeCCCCceEeeccccceeeeehhccchhhhhhhhhhhcceeecccceEEEeecccH-HHhhccCcCCcEEE
Confidence 4567788999999999999999999999999999976543 34477899999999987 89999999999999
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
|.++++.++..+ .++|...|+|+.|+.|+..+++++ .|.++++.-+.+++...
T Consensus 290 Wri~tG~ClRrF--------------------------drAHtkGvt~l~FSrD~SqiLS~s-fD~tvRiHGlKSGK~LK 342 (508)
T KOG0275|consen 290 WRIETGQCLRRF--------------------------DRAHTKGVTCLSFSRDNSQILSAS-FDQTVRIHGLKSGKCLK 342 (508)
T ss_pred EEEecchHHHHh--------------------------hhhhccCeeEEEEccCcchhhccc-ccceEEEeccccchhHH
Confidence 999988766533 237888999999999999999855 79999999999998876
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHIL 336 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~ 336 (512)
++.+|...|+...|.++|..+++++.||+|++|+..+.+ .+.++........+..+-.-| +...++
T Consensus 343 -----------EfrGHsSyvn~a~ft~dG~~iisaSsDgtvkvW~~Ktte--C~~Tfk~~~~d~~vnsv~~~PKnpeh~i 409 (508)
T KOG0275|consen 343 -----------EFRGHSSYVNEATFTDDGHHIISASSDGTVKVWHGKTTE--CLSTFKPLGTDYPVNSVILLPKNPEHFI 409 (508)
T ss_pred -----------HhcCccccccceEEcCCCCeEEEecCCccEEEecCcchh--hhhhccCCCCcccceeEEEcCCCCceEE
Confidence 688999999999999999999999999999999987644 333443333344455555555 456788
Q ss_pred EecCCCCEEEEecCCCCCCCceec-c--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc
Q 010390 337 SGSSDGNAYVWQVNKPQADPIKLK-S--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~~~~~~~~-~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 402 (512)
++...++|+|.++...- ...+. + ..+...+...+|.| .++...+.|+.++.+.+.+|++.+++
T Consensus 410 VCNrsntv~imn~qGQv--VrsfsSGkREgGdFi~~~lSpkG-ewiYcigED~vlYCF~~~sG~LE~tl 475 (508)
T KOG0275|consen 410 VCNRSNTVYIMNMQGQV--VRSFSSGKREGGDFINAILSPKG-EWIYCIGEDGVLYCFSVLSGKLERTL 475 (508)
T ss_pred EEcCCCeEEEEeccceE--EeeeccCCccCCceEEEEecCCC-cEEEEEccCcEEEEEEeecCceeeee
Confidence 88888999999986532 22332 1 23456677899999 89999999999999999999987763
No 109
>KOG1332 consensus Vesicle coat complex COPII, subunit SEC13 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.96 E-value=1.1e-27 Score=192.59 Aligned_cols=254 Identities=22% Similarity=0.287 Sum_probs=201.0
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEee-CCCCCeEEEEeCCCcEEEEeC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSH-PTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd~ 180 (512)
..|++.|.++...-.|+.|+|++.|++|+|+.++.. +.+.++.+|.++|+.++|. |.-+.+|++++.||.|.||.-
T Consensus 8 t~H~D~IHda~lDyygkrlATcsSD~tVkIf~v~~n~~s~ll~~L~Gh~GPVwqv~wahPk~G~iLAScsYDgkVIiWke 87 (299)
T KOG1332|consen 8 TQHEDMIHDAQLDYYGKRLATCSSDGTVKIFEVRNNGQSKLLAELTGHSGPVWKVAWAHPKFGTILASCSYDGKVIIWKE 87 (299)
T ss_pred hhhhhhhhHhhhhhhcceeeeecCCccEEEEEEcCCCCceeeeEecCCCCCeeEEeecccccCcEeeEeecCceEEEEec
Confidence 578899999888888999999999999999998764 5688899999999999995 554599999999999999998
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecc
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
.+++-.+ ......|...|++++|.|.+. .++++++.||.|.+.+.+....-..
T Consensus 88 ~~g~w~k-------------------------~~e~~~h~~SVNsV~wapheygl~LacasSDG~vsvl~~~~~g~w~t- 141 (299)
T KOG1332|consen 88 ENGRWTK-------------------------AYEHAAHSASVNSVAWAPHEYGLLLACASSDGKVSVLTYDSSGGWTT- 141 (299)
T ss_pred CCCchhh-------------------------hhhhhhhcccceeecccccccceEEEEeeCCCcEEEEEEcCCCCccc-
Confidence 7764222 224567899999999988543 3445567899999999886521111
Q ss_pred cCCCccccccccccccCeeEEEeCCC---C-----------CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEE
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSN---G-----------VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVK 325 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~---~-----------~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~ 325 (512)
......|.-+|++++|.|. | +.|++|+.|+.|+||+.....-..-..+.+| ..++..
T Consensus 142 -------~ki~~aH~~GvnsVswapa~~~g~~~~~~~~~~~krlvSgGcDn~VkiW~~~~~~w~~e~~l~~H--~dwVRD 212 (299)
T KOG1332|consen 142 -------SKIVFAHEIGVNSVSWAPASAPGSLVDQGPAAKVKRLVSGGCDNLVKIWKFDSDSWKLERTLEGH--KDWVRD 212 (299)
T ss_pred -------hhhhhccccccceeeecCcCCCccccccCcccccceeeccCCccceeeeecCCcchhhhhhhhhc--chhhhh
Confidence 1146778889999999986 4 5699999999999999876533333445555 467888
Q ss_pred EEECCCC----CEEEEecCCCCEEEEecCCCCC--CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 326 SEICPNA----SHILSGSSDGNAYVWQVNKPQA--DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 326 ~~~s~~~----~~l~~g~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
++|.|.- ..||+++.||++.||..+.... ....+......+..+.|+..| ++|+.++.|+.|.+|.-.
T Consensus 213 VAwaP~~gl~~s~iAS~SqDg~viIwt~~~e~e~wk~tll~~f~~~~w~vSWS~sG-n~LaVs~GdNkvtlwke~ 286 (299)
T KOG1332|consen 213 VAWAPSVGLPKSTIASCSQDGTVIIWTKDEEYEPWKKTLLEEFPDVVWRVSWSLSG-NILAVSGGDNKVTLWKEN 286 (299)
T ss_pred hhhccccCCCceeeEEecCCCcEEEEEecCccCcccccccccCCcceEEEEEeccc-cEEEEecCCcEEEEEEeC
Confidence 9999974 5799999999999998764322 123445567789999999999 899999999999999754
No 110
>KOG0289 consensus mRNA splicing factor [General function prediction only]
Probab=99.96 E-value=4.1e-27 Score=204.30 Aligned_cols=257 Identities=19% Similarity=0.245 Sum_probs=211.8
Q ss_pred ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390 36 FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115 (512)
Q Consensus 36 ~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 115 (512)
+...+.++..+.||.-.|+++.+ +|+...+++++.|-.|+||...... .......|+++|+.+.
T Consensus 247 d~~s~q~l~~~~Gh~kki~~v~~---~~~~~~v~~aSad~~i~vws~~~~s-------------~~~~~~~h~~~V~~ls 310 (506)
T KOG0289|consen 247 DKPSNQILATLKGHTKKITSVKF---HKDLDTVITASADEIIRVWSVPLSS-------------EPTSSRPHEEPVTGLS 310 (506)
T ss_pred ecchhhhhhhccCcceEEEEEEe---ccchhheeecCCcceEEeecccccc-------------Cccccccccccceeee
Confidence 34556777789999999999999 9999999999999999999986543 2555678999999999
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 116 WIKEDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 116 ~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
.+|.|+||++++.|++....|++++.++..... ..-.+++.+|+||| .+|.+|..||.|++||+.+.....
T Consensus 311 ~h~tgeYllsAs~d~~w~Fsd~~~g~~lt~vs~~~s~v~~ts~~fHpDg-Lifgtgt~d~~vkiwdlks~~~~a------ 383 (506)
T KOG0289|consen 311 LHPTGEYLLSASNDGTWAFSDISSGSQLTVVSDETSDVEYTSAAFHPDG-LIFGTGTPDGVVKIWDLKSQTNVA------ 383 (506)
T ss_pred eccCCcEEEEecCCceEEEEEccCCcEEEEEeeccccceeEEeeEcCCc-eEEeccCCCceEEEEEcCCccccc------
Confidence 999999999999999999999999988776653 22358999999999 999999999999999998765333
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
.+.+|.++|..++|+.+|-++++++ +|+.|++||+|..+...+.. ...
T Consensus 384 ---------------------~Fpght~~vk~i~FsENGY~Lat~a-dd~~V~lwDLRKl~n~kt~~----------l~~ 431 (506)
T KOG0289|consen 384 ---------------------KFPGHTGPVKAISFSENGYWLATAA-DDGSVKLWDLRKLKNFKTIQ----------LDE 431 (506)
T ss_pred ---------------------cCCCCCCceeEEEeccCceEEEEEe-cCCeEEEEEehhhcccceee----------ccc
Confidence 6678999999999999999999855 79999999999887655432 122
Q ss_pred ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390 274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQV 349 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~ 349 (512)
..++.++.|+..|.+|+.++.+=.|++++-.+.+...+..+..+. ...+.+.|....+++++++.|..++++.+
T Consensus 432 ~~~v~s~~fD~SGt~L~~~g~~l~Vy~~~k~~k~W~~~~~~~~~s--g~st~v~Fg~~aq~l~s~smd~~l~~~a~ 505 (506)
T KOG0289|consen 432 KKEVNSLSFDQSGTYLGIAGSDLQVYICKKKTKSWTEIKELADHS--GLSTGVRFGEHAQYLASTSMDAILRLYAL 505 (506)
T ss_pred cccceeEEEcCCCCeEEeecceeEEEEEecccccceeeehhhhcc--cccceeeecccceEEeeccchhheEEeec
Confidence 237999999999999999988877777775544444444444443 45667899999999999999999888864
No 111
>KOG0300 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.96 E-value=6.4e-27 Score=195.22 Aligned_cols=299 Identities=19% Similarity=0.292 Sum_probs=235.2
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
..++.+.+|++.|+.++-......+.+++.|.+.+||.+++++|+.++.+|.+.|++|.|++.+ .++++++.|++-.||
T Consensus 139 ~lvre~~GHkDGiW~Vaa~~tqpi~gtASADhTA~iWs~Esg~CL~~Y~GH~GSVNsikfh~s~-~L~lTaSGD~taHIW 217 (481)
T KOG0300|consen 139 RLVRELEGHKDGIWHVAADSTQPICGTASADHTARIWSLESGACLATYTGHTGSVNSIKFHNSG-LLLLTASGDETAHIW 217 (481)
T ss_pred eehhhhcccccceeeehhhcCCcceeecccccceeEEeeccccceeeecccccceeeEEecccc-ceEEEccCCcchHHH
Confidence 4477889999999999988777788899999999999999999999999999999999999987 999999999999999
Q ss_pred eCC------CCCCCCCccccceeeecc---------cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC
Q 010390 179 DLR------CKSSPKSNCAESFVFSSA---------VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS 243 (512)
Q Consensus 179 d~~------~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg 243 (512)
... ..........+....... ....++ ...-.+..+.+|...|.+..|...++++++ ++.|.
T Consensus 218 ~~av~~~vP~~~a~~~hSsEeE~e~sDe~~~d~d~~~~sD~~--tiRvPl~~ltgH~~vV~a~dWL~gg~Q~vT-aSWDR 294 (481)
T KOG0300|consen 218 KAAVNWEVPSNNAPSDHSSEEEEEHSDEHNRDTDSSEKSDGH--TIRVPLMRLTGHRAVVSACDWLAGGQQMVT-ASWDR 294 (481)
T ss_pred HHhhcCcCCCCCCCCCCCchhhhhcccccccccccccccCCc--eeeeeeeeeeccccceEehhhhcCcceeee-eeccc
Confidence 732 211111111111000000 000000 111234467889999999999999999988 55899
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeE
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFY 323 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~ 323 (512)
+-.+||++++..+. .+.+|....+.++-+|..+++++++.|-+.++||++ .....+..+.+|. ..+
T Consensus 295 TAnlwDVEtge~v~-----------~LtGHd~ELtHcstHptQrLVvTsSrDtTFRLWDFR-eaI~sV~VFQGHt--dtV 360 (481)
T KOG0300|consen 295 TANLWDVETGEVVN-----------ILTGHDSELTHCSTHPTQRLVVTSSRDTTFRLWDFR-EAIQSVAVFQGHT--DTV 360 (481)
T ss_pred cceeeeeccCceec-----------cccCcchhccccccCCcceEEEEeccCceeEeccch-hhcceeeeecccc--cce
Confidence 99999999998776 588899999999999999999999999999999997 3456677788875 457
Q ss_pred EEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccc-
Q 010390 324 VKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMR- 402 (512)
Q Consensus 324 ~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~- 402 (512)
+++.|..+ ..+++|++|.+|++||+++...++.++. -+.+++.++.+..+ .+++.--++..|++||+...++-+..
T Consensus 361 TS~vF~~d-d~vVSgSDDrTvKvWdLrNMRsplATIR-tdS~~NRvavs~g~-~iIAiPhDNRqvRlfDlnG~RlaRlPr 437 (481)
T KOG0300|consen 361 TSVVFNTD-DRVVSGSDDRTVKVWDLRNMRSPLATIR-TDSPANRVAVSKGH-PIIAIPHDNRQVRLFDLNGNRLARLPR 437 (481)
T ss_pred eEEEEecC-CceeecCCCceEEEeeeccccCcceeee-cCCccceeEeecCC-ceEEeccCCceEEEEecCCCccccCCc
Confidence 77888765 4588999999999999999887766665 46789999999876 68888888899999999988876664
Q ss_pred -cCccccceeeeeccch
Q 010390 403 -SPSSVRRRVMAIPSTE 418 (512)
Q Consensus 403 -~~~~~~~~~~~~~~~~ 418 (512)
..+.+.+.+.++++.+
T Consensus 438 tsRqgHrRMV~c~AW~e 454 (481)
T KOG0300|consen 438 TSRQGHRRMVTCCAWLE 454 (481)
T ss_pred ccccccceeeeeeeccc
Confidence 3455667777776654
No 112
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.96 E-value=3.8e-27 Score=216.63 Aligned_cols=312 Identities=15% Similarity=0.220 Sum_probs=233.8
Q ss_pred ccCCcceEEEEEec---------CCCcEEEEeeCCCcEEEEECCCCCCcccccc----c--------ccc----------
Q 010390 49 EETPPLAVSFCKTS---------KNSHIFAVSDEDGYVSLFDSRRKLPSFACHR----E--------NAE---------- 97 (512)
Q Consensus 49 h~~~v~~v~~~~~s---------~~~~~latg~~dg~i~iwd~~~~~~~~~~~~----~--------~~~---------- 97 (512)
|..-|++|.-.++. |.+ -+.|++.|++|++||+..+.......+ . +.+
T Consensus 368 HS~ciW~Ve~~p~nv~~~~~aclp~~-cF~TCSsD~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~ 446 (1080)
T KOG1408|consen 368 HSACIWDVENLPCNVHSPTAACLPRG-CFTTCSSDGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAG 446 (1080)
T ss_pred ccceeeeeccccccccCcccccCCcc-ceeEecCCCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCC
Confidence 66666666654321 222 488999999999999886321111000 0 000
Q ss_pred --ccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCC--CCCeEEEEeCCC
Q 010390 98 --KARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPT--NSDILVSGSRDG 173 (512)
Q Consensus 98 --~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~--~~~~l~s~~~dg 173 (512)
.+.....-.....+.+++.+|+|++|++|..-|+++||++...+....+..|...|.|+.|+.. +..+|++++.|.
T Consensus 447 ~fdka~~s~~d~r~G~R~~~vSp~gqhLAsGDr~GnlrVy~Lq~l~~~~~~eAHesEilcLeyS~p~~~~kLLASasrdR 526 (1080)
T KOG1408|consen 447 IFDKALVSTCDSRFGFRALAVSPDGQHLASGDRGGNLRVYDLQELEYTCFMEAHESEILCLEYSFPVLTNKLLASASRDR 526 (1080)
T ss_pred cccccchhhcCcccceEEEEECCCcceecccCccCceEEEEehhhhhhhheecccceeEEEeecCchhhhHhhhhccCCc
Confidence 0111112234467999999999999999999999999999999999999999999999999753 236899999999
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecC--CEEEEEeecCCeEEEEecc
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE--VSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~--~~l~~~g~~dg~i~iwd~~ 251 (512)
.|++||+...-. ....+.+|...|+++.|.-+| ..++++| .|..|.+--.+
T Consensus 527 lIHV~Dv~rny~--------------------------l~qtld~HSssITsvKFa~~gln~~MiscG-ADksimFr~~q 579 (1080)
T KOG1408|consen 527 LIHVYDVKRNYD--------------------------LVQTLDGHSSSITSVKFACNGLNRKMISCG-ADKSIMFRVNQ 579 (1080)
T ss_pred eEEEEecccccc--------------------------hhhhhcccccceeEEEEeecCCceEEEecc-Cchhhheehhc
Confidence 999999875432 223566889999999998877 6677766 57766543322
Q ss_pred CccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece-eceeEEEEEECC
Q 010390 252 NLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICP 330 (512)
Q Consensus 252 ~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~ 330 (512)
.......+.. + ........++.|+..|+.+++++++.|..|+|||+..+ +..+.+.+.. .++....+...|
T Consensus 580 k~~~g~~f~r-~-----t~t~~ktTlYDm~Vdp~~k~v~t~cQDrnirif~i~sg--Kq~k~FKgs~~~eG~lIKv~lDP 651 (1080)
T KOG1408|consen 580 KASSGRLFPR-H-----TQTLSKTTLYDMAVDPTSKLVVTVCQDRNIRIFDIESG--KQVKSFKGSRDHEGDLIKVILDP 651 (1080)
T ss_pred cccCceeccc-c-----ccccccceEEEeeeCCCcceEEEEecccceEEEecccc--ceeeeecccccCCCceEEEEECC
Confidence 1111111000 0 22333456899999999999999999999999999874 4555666543 346788899999
Q ss_pred CCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 331 NASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
.|.||++...|.++.++|+.++++ .....||...|+.+.|.+|- +.|++.+.||.|.||.+.....
T Consensus 652 SgiY~atScsdktl~~~Df~sgEc-vA~m~GHsE~VTG~kF~nDC-kHlISvsgDgCIFvW~lp~~mi 717 (1080)
T KOG1408|consen 652 SGIYLATSCSDKTLCFVDFVSGEC-VAQMTGHSEAVTGVKFLNDC-KHLISVSGDGCIFVWKLPLTMI 717 (1080)
T ss_pred CccEEEEeecCCceEEEEeccchh-hhhhcCcchheeeeeecccc-hhheeecCCceEEEEECchhHh
Confidence 999999999999999999999988 57888999999999999999 8999999999999999876443
No 113
>KOG0264 consensus Nucleosome remodeling factor, subunit CAF1/NURF55/MSI1 [Chromatin structure and dynamics]
Probab=99.96 E-value=1.6e-27 Score=208.47 Aligned_cols=281 Identities=12% Similarity=0.198 Sum_probs=219.4
Q ss_pred CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEE
Q 010390 148 GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVL 227 (512)
Q Consensus 148 ~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~ 227 (512)
.|.+.|+.+.+.|+++.++++.+..+.|.|||............ ......++.+|...-.+++
T Consensus 122 ~h~gEVnRaRymPQnp~iVAt~t~~~dv~Vfd~tk~~s~~~~~~-----------------~~~Pdl~L~gH~~eg~gls 184 (422)
T KOG0264|consen 122 NHDGEVNRARYMPQNPNIVATKTSSGDVYVFDYTKHPSKPKASG-----------------ECRPDLRLKGHEKEGYGLS 184 (422)
T ss_pred cCCccchhhhhCCCCCcEEEecCCCCCEEEEEeccCCCcccccc-----------------cCCCceEEEeecccccccc
Confidence 48999999999999999999999999999999875443221100 1233346778888888899
Q ss_pred EeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccC
Q 010390 228 YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 228 ~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~ 306 (512)
|++.....+.+++.|+.|++||+........... +...+.+|...|..++|++- ...+++.+.|+.+.|||++..
T Consensus 185 Wn~~~~g~Lls~~~d~~i~lwdi~~~~~~~~~~~----p~~~~~~h~~~VeDV~~h~~h~~lF~sv~dd~~L~iwD~R~~ 260 (422)
T KOG0264|consen 185 WNRQQEGTLLSGSDDHTICLWDINAESKEDKVVD----PKTIFSGHEDVVEDVAWHPLHEDLFGSVGDDGKLMIWDTRSN 260 (422)
T ss_pred cccccceeEeeccCCCcEEEEeccccccCCcccc----ceEEeecCCcceehhhccccchhhheeecCCCeEEEEEcCCC
Confidence 9998887777788999999999987655321111 12267889999999999984 557888899999999999874
Q ss_pred CCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 307 DKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
...+......| ...+.+++|+|-+ ..||+|+.|++|++||+++....+..+.+|+..|.+|.|+|.....|++++.|
T Consensus 261 ~~~~~~~~~ah--~~~vn~~~fnp~~~~ilAT~S~D~tV~LwDlRnL~~~lh~~e~H~dev~~V~WSPh~etvLASSg~D 338 (422)
T KOG0264|consen 261 TSKPSHSVKAH--SAEVNCVAFNPFNEFILATGSADKTVALWDLRNLNKPLHTFEGHEDEVFQVEWSPHNETVLASSGTD 338 (422)
T ss_pred CCCCccccccc--CCceeEEEeCCCCCceEEeccCCCcEEEeechhcccCceeccCCCcceEEEEeCCCCCceeEecccC
Confidence 33444444444 4668899999965 56689999999999999999888899999999999999999988899999999
Q ss_pred CcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCCCCCeecCc
Q 010390 386 YTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPKNMPIIRTP 462 (512)
Q Consensus 386 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~ 462 (512)
+.+.|||+..-...+. ++. +......+++...++...+. +++|+|..............+.+|.-.
T Consensus 339 ~rl~vWDls~ig~eq~--~ed--------a~dgppEllF~HgGH~~kV~-DfsWnp~ePW~I~SvaeDN~LqIW~~s 404 (422)
T KOG0264|consen 339 RRLNVWDLSRIGEEQS--PED--------AEDGPPELLFIHGGHTAKVS-DFSWNPNEPWTIASVAEDNILQIWQMA 404 (422)
T ss_pred CcEEEEeccccccccC--hhh--------hccCCcceeEEecCcccccc-cccCCCCCCeEEEEecCCceEEEeecc
Confidence 9999999976443332 111 44456778889999999998 999999998877665555555555554
No 114
>KOG0643 consensus Translation initiation factor 3, subunit i (eIF-3i)/TGF-beta receptor-interacting protein (TRIP-1) [Translation, ribosomal structure and biogenesis; Signal transduction mechanisms]
Probab=99.96 E-value=1.1e-26 Score=189.35 Aligned_cols=298 Identities=14% Similarity=0.132 Sum_probs=221.2
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
.+++|+.+++.+.|+.+|++|.+++.|.+..||-..+|+.+.++.+|.+.|+|+...-+. ..+++|+.|.++++||+.+
T Consensus 5 ~l~GHERplTqiKyN~eGDLlFscaKD~~~~vw~s~nGerlGty~GHtGavW~~Did~~s-~~liTGSAD~t~kLWDv~t 83 (327)
T KOG0643|consen 5 LLQGHERPLTQIKYNREGDLLFSCAKDSTPTVWYSLNGERLGTYDGHTGAVWCCDIDWDS-KHLITGSADQTAKLWDVET 83 (327)
T ss_pred ccccCccccceEEecCCCcEEEEecCCCCceEEEecCCceeeeecCCCceEEEEEecCCc-ceeeeccccceeEEEEcCC
Confidence 468999999999999999999999999999999998999999999999999999998876 8999999999999999999
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee----cCCeEEEEeccCccceec
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA----VNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~----~dg~i~iwd~~~~~~~~~ 258 (512)
++.+... ....+|..+.|+.+++.++++.. ..+.|.++|++.......
T Consensus 84 Gk~la~~----------------------------k~~~~Vk~~~F~~~gn~~l~~tD~~mg~~~~v~~fdi~~~~~~~~ 135 (327)
T KOG0643|consen 84 GKQLATW----------------------------KTNSPVKRVDFSFGGNLILASTDKQMGYTCFVSVFDIRDDSSDID 135 (327)
T ss_pred CcEEEEe----------------------------ecCCeeEEEeeccCCcEEEEEehhhcCcceEEEEEEccCChhhhc
Confidence 8865533 23458999999999998887541 346799999985543211
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG 338 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g 338 (512)
...| ......+...++.+.|.|-++.|++|..||.|.+||++++.. .+..... +...+..+++++|..+++++
T Consensus 136 s~ep----~~kI~t~~skit~a~Wg~l~~~ii~Ghe~G~is~~da~~g~~-~v~s~~~--h~~~Ind~q~s~d~T~FiT~ 208 (327)
T KOG0643|consen 136 SEEP----YLKIPTPDSKITSALWGPLGETIIAGHEDGSISIYDARTGKE-LVDSDEE--HSSKINDLQFSRDRTYFITG 208 (327)
T ss_pred ccCc----eEEecCCccceeeeeecccCCEEEEecCCCcEEEEEcccCce-eeechhh--hccccccccccCCcceEEec
Confidence 1111 113445557899999999999999999999999999976422 2222222 23468889999999999999
Q ss_pred cCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC-cEEEEeCCCCcccccccCccccceeeeeccc
Q 010390 339 SSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY-TVRLWSLENSRCSSMRSPSSVRRRVMAIPST 417 (512)
Q Consensus 339 ~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 417 (512)
+.|.+-++||..+.+.. .++. -+.+|++.+++|.....++-|+.+- .|.-=+...|+....+-..
T Consensus 209 s~Dttakl~D~~tl~v~-Kty~-te~PvN~aaisP~~d~VilgGGqeA~dVTTT~~r~GKFEArFyh~------------ 274 (327)
T KOG0643|consen 209 SKDTTAKLVDVRTLEVL-KTYT-TERPVNTAAISPLLDHVILGGGQEAMDVTTTSTRAGKFEARFYHL------------ 274 (327)
T ss_pred ccCccceeeeccceeeE-EEee-ecccccceecccccceEEecCCceeeeeeeecccccchhhhHHHH------------
Confidence 99999999999987653 3443 4679999999998733444444432 2222222233222111100
Q ss_pred hhcccccCCCCcccccCCCCcCCCchhcccCCCC
Q 010390 418 ECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSS 451 (512)
Q Consensus 418 ~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 451 (512)
-..+-+..-.+++..++ .++|+|||+..+++..
T Consensus 275 i~eEEigrvkGHFGPIN-svAfhPdGksYsSGGE 307 (327)
T KOG0643|consen 275 IFEEEIGRVKGHFGPIN-SVAFHPDGKSYSSGGE 307 (327)
T ss_pred HHHHHhccccccccCcc-eeEECCCCcccccCCC
Confidence 01122334456777888 8999999998887743
No 115
>KOG0268 consensus Sof1-like rRNA processing protein (contains WD40 repeats) [RNA processing and modification]
Probab=99.96 E-value=2.9e-28 Score=206.69 Aligned_cols=253 Identities=16% Similarity=0.271 Sum_probs=203.7
Q ss_pred ceeccccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 100 RISDWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
-+..+.+|.+.|.+++=+|.. ..+++|+.||.|+|||+.+..+..++..|.+.|..|++.. ..+++++.|.+|+.|
T Consensus 58 Fv~~L~gHrdGV~~lakhp~~ls~~aSGs~DG~VkiWnlsqR~~~~~f~AH~G~V~Gi~v~~---~~~~tvgdDKtvK~w 134 (433)
T KOG0268|consen 58 FVGSLDGHRDGVSCLAKHPNKLSTVASGSCDGEVKIWNLSQRECIRTFKAHEGLVRGICVTQ---TSFFTVGDDKTVKQW 134 (433)
T ss_pred chhhccccccccchhhcCcchhhhhhccccCceEEEEehhhhhhhheeecccCceeeEEecc---cceEEecCCcceeee
Confidence 466778999999999999976 7789999999999999999999999999999999999986 568999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
.++.. ... .......+..+.-+..+..++++| -.|.|||......+..
T Consensus 135 k~~~~-p~~----------------------------tilg~s~~~gIdh~~~~~~FaTcG---e~i~IWD~~R~~Pv~s 182 (433)
T KOG0268|consen 135 KIDGP-PLH----------------------------TILGKSVYLGIDHHRKNSVFATCG---EQIDIWDEQRDNPVSS 182 (433)
T ss_pred eccCC-cce----------------------------eeeccccccccccccccccccccC---ceeeecccccCCccce
Confidence 98753 111 112234566677666677777654 4699999987666553
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
+.-....|.++.|+|... .|+++..|+.|.+||++.........+. . ....++|+|.+--+++
T Consensus 183 -----------mswG~Dti~svkfNpvETsILas~~sDrsIvLyD~R~~~Pl~KVi~~-m----RTN~IswnPeafnF~~ 246 (433)
T KOG0268|consen 183 -----------MSWGADSISSVKFNPVETSILASCASDRSIVLYDLRQASPLKKVILT-M----RTNTICWNPEAFNFVA 246 (433)
T ss_pred -----------eecCCCceeEEecCCCcchheeeeccCCceEEEecccCCccceeeee-c----cccceecCccccceee
Confidence 333445689999999765 5667779999999999875432222222 2 1234899998888899
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccC
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSP 404 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 404 (512)
|++|..++.||++....++....+|.+.|.+++|+|.| +-+++||.|.+|+||....+....+...
T Consensus 247 a~ED~nlY~~DmR~l~~p~~v~~dhvsAV~dVdfsptG-~EfvsgsyDksIRIf~~~~~~SRdiYht 312 (433)
T KOG0268|consen 247 ANEDHNLYTYDMRNLSRPLNVHKDHVSAVMDVDFSPTG-QEFVSGSYDKSIRIFPVNHGHSRDIYHT 312 (433)
T ss_pred ccccccceehhhhhhcccchhhcccceeEEEeccCCCc-chhccccccceEEEeecCCCcchhhhhH
Confidence 99999999999999888888999999999999999999 8999999999999999998886665443
No 116
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.96 E-value=3.4e-27 Score=208.45 Aligned_cols=284 Identities=17% Similarity=0.224 Sum_probs=228.5
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc--cCCCcEEEEEEecCCCEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV--AHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~l~~s~~~~~l~ 124 (512)
-.|-..|.+++. |...+++.||+ .|.|+|||+..... ..++..+. ...+-|+++..+|||+.|+
T Consensus 416 L~HGEvVcAvtI---S~~trhVyTgG-kgcVKVWdis~pg~----------k~PvsqLdcl~rdnyiRSckL~pdgrtLi 481 (705)
T KOG0639|consen 416 LAHGEVVCAVTI---SNPTRHVYTGG-KGCVKVWDISQPGN----------KSPVSQLDCLNRDNYIRSCKLLPDGRTLI 481 (705)
T ss_pred hccCcEEEEEEe---cCCcceeEecC-CCeEEEeeccCCCC----------CCccccccccCcccceeeeEecCCCceEE
Confidence 347888888888 77888999988 67899999975422 22233332 3457899999999999999
Q ss_pred EEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 125 TASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
+|+.-.++.|||+..... ...+....-...+++.+||. ++.++++.||.|.|||+.+...
T Consensus 482 vGGeastlsiWDLAapTprikaeltssapaCyALa~spDa-kvcFsccsdGnI~vwDLhnq~~----------------- 543 (705)
T KOG0639|consen 482 VGGEASTLSIWDLAAPTPRIKAELTSSAPACYALAISPDA-KVCFSCCSDGNIAVWDLHNQTL----------------- 543 (705)
T ss_pred eccccceeeeeeccCCCcchhhhcCCcchhhhhhhcCCcc-ceeeeeccCCcEEEEEccccee-----------------
Confidence 999999999999987643 33444444567789999987 8999999999999999986544
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
++.+.+|...+.||..+++|..|.+ |+-|.+|+.||+++++.+.. ......|.++..
T Consensus 544 ----------VrqfqGhtDGascIdis~dGtklWT-GGlDntvRcWDlregrqlqq------------hdF~SQIfSLg~ 600 (705)
T KOG0639|consen 544 ----------VRQFQGHTDGASCIDISKDGTKLWT-GGLDNTVRCWDLREGRQLQQ------------HDFSSQIFSLGY 600 (705)
T ss_pred ----------eecccCCCCCceeEEecCCCceeec-CCCccceeehhhhhhhhhhh------------hhhhhhheeccc
Confidence 3367789999999999999999998 55899999999999887643 333456999999
Q ss_pred CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccc
Q 010390 283 DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSH 362 (512)
Q Consensus 283 ~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h 362 (512)
+|++.+|++|-.++.+.+......+ .+.-+.+++.|.++.|.+.|+++++.+.|+.+..|...-+... .....
T Consensus 601 cP~~dWlavGMens~vevlh~skp~-----kyqlhlheScVLSlKFa~cGkwfvStGkDnlLnawrtPyGasi--FqskE 673 (705)
T KOG0639|consen 601 CPTGDWLAVGMENSNVEVLHTSKPE-----KYQLHLHESCVLSLKFAYCGKWFVSTGKDNLLNAWRTPYGASI--FQSKE 673 (705)
T ss_pred CCCccceeeecccCcEEEEecCCcc-----ceeecccccEEEEEEecccCceeeecCchhhhhhccCccccce--eeccc
Confidence 9999999999999999988865432 2333445677899999999999999999999999998877652 22234
Q ss_pred cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 363 DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 363 ~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
...|.++..+.|+ ++++||+.|....||.+
T Consensus 674 ~SsVlsCDIS~dd-kyIVTGSGdkkATVYeV 703 (705)
T KOG0639|consen 674 SSSVLSCDISFDD-KYIVTGSGDKKATVYEV 703 (705)
T ss_pred cCcceeeeeccCc-eEEEecCCCcceEEEEE
Confidence 6789999999999 89999999998888875
No 117
>KOG0641 consensus WD40 repeat protein [General function prediction only]
Probab=99.96 E-value=7e-26 Score=180.11 Aligned_cols=263 Identities=19% Similarity=0.247 Sum_probs=204.1
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE- 119 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~- 119 (512)
.+....+.|.+.|+|++| ||+|.+||+|+.|.+|++--.+..... ....-..+.-|.+.|..++|..+
T Consensus 80 v~~kr~khhkgsiyc~~w---s~~geliatgsndk~ik~l~fn~dt~~--------~~g~dle~nmhdgtirdl~fld~~ 148 (350)
T KOG0641|consen 80 VLCKRNKHHKGSIYCTAW---SPCGELIATGSNDKTIKVLPFNADTCN--------ATGHDLEFNMHDGTIRDLAFLDDP 148 (350)
T ss_pred EEeeeccccCccEEEEEe---cCccCeEEecCCCceEEEEeccccccc--------ccCcceeeeecCCceeeeEEecCC
Confidence 455667789999999999 999999999999999999876544321 11223456779999999999763
Q ss_pred ---CCEEEEEeC-CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 120 ---DTNILTASG-DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 120 ---~~~l~s~~~-dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
+..|++++. |..|++-|-..|+..+.+.+|.+.|.++- +-.+ .++++|+.|.+|++||++-..+.........
T Consensus 149 ~s~~~il~s~gagdc~iy~tdc~~g~~~~a~sghtghilaly-swn~-~m~~sgsqdktirfwdlrv~~~v~~l~~~~~- 225 (350)
T KOG0641|consen 149 ESGGAILASAGAGDCKIYITDCGRGQGFHALSGHTGHILALY-SWNG-AMFASGSQDKTIRFWDLRVNSCVNTLDNDFH- 225 (350)
T ss_pred CcCceEEEecCCCcceEEEeecCCCCcceeecCCcccEEEEE-EecC-cEEEccCCCceEEEEeeeccceeeeccCccc-
Confidence 456776554 77888889999999999999999998873 2234 8999999999999999986655443221100
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
........|.+++..|.|+.+++ |..|....+||++.++.+. .+..|..
T Consensus 226 -------------------~~glessavaav~vdpsgrll~s-g~~dssc~lydirg~r~iq-----------~f~phsa 274 (350)
T KOG0641|consen 226 -------------------DGGLESSAVAAVAVDPSGRLLAS-GHADSSCMLYDIRGGRMIQ-----------RFHPHSA 274 (350)
T ss_pred -------------------CCCcccceeEEEEECCCcceeee-ccCCCceEEEEeeCCceee-----------eeCCCcc
Confidence 00112357999999999998876 7789999999999988776 4677788
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
.|.++.|+|...++++++.|..|++-|+...-.. ++.....| ...+..+.|+|..--+++.+.|.++.+|-+.
T Consensus 275 dir~vrfsp~a~yllt~syd~~ikltdlqgdla~el~~~vv~eh--kdk~i~~rwh~~d~sfisssadkt~tlwa~~ 349 (350)
T KOG0641|consen 275 DIRCVRFSPGAHYLLTCSYDMKIKLTDLQGDLAHELPIMVVAEH--KDKAIQCRWHPQDFSFISSSADKTATLWALN 349 (350)
T ss_pred ceeEEEeCCCceEEEEecccceEEEeecccchhhcCceEEEEec--cCceEEEEecCccceeeeccCcceEEEeccC
Confidence 9999999999999999999999999998653222 22233333 3446678999999889999999999999764
No 118
>KOG0308 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.95 E-value=7.7e-27 Score=212.56 Aligned_cols=258 Identities=15% Similarity=0.271 Sum_probs=205.5
Q ss_pred CCCcEE---EEEEec-CCCEEEEEeCCCcEEEEeCCCCe------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390 107 HQNAIF---DLCWIK-EDTNILTASGDQTIKIWDAEKKK------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFA 176 (512)
Q Consensus 107 h~~~V~---~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 176 (512)
|...|. .+..+. .+++|+|||.||.|++|++.... .+..++.|.+.|+.+....++ +.|++++.|-+|+
T Consensus 20 n~~~v~~~~~Lq~da~~~ryLfTgGRDg~i~~W~~~~d~~~~s~~~~asme~HsDWVNDiiL~~~~-~tlIS~SsDtTVK 98 (735)
T KOG0308|consen 20 NRNGVNITKALQLDAPNGRYLFTGGRDGIIRLWSVTQDSNEPSTPYIASMEHHSDWVNDIILCGNG-KTLISASSDTTVK 98 (735)
T ss_pred ccccccchhhccccCCCCceEEecCCCceEEEeccccccCCcccchhhhhhhhHhHHhhHHhhcCC-CceEEecCCceEE
Confidence 444444 444443 67789999999999999986532 467888999999999988877 7999999999999
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~ 256 (512)
+|+..... .-.+..+..|...|.|+++....+.++++|+.|+.|.+||++++...
T Consensus 99 ~W~~~~~~-------------------------~~c~stir~H~DYVkcla~~ak~~~lvaSgGLD~~IflWDin~~~~~ 153 (735)
T KOG0308|consen 99 VWNAHKDN-------------------------TFCMSTIRTHKDYVKCLAYIAKNNELVASGGLDRKIFLWDINTGTAT 153 (735)
T ss_pred EeecccCc-------------------------chhHhhhhcccchheeeeecccCceeEEecCCCccEEEEEccCcchh
Confidence 99987543 12233667899999999995555566666779999999999987442
Q ss_pred ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
...............++..+|++++.++.|..+++|+.++.|++||.++ ...+..+.+|. ..+..+..++||..++
T Consensus 154 l~~s~n~~t~~sl~sG~k~siYSLA~N~t~t~ivsGgtek~lr~wDprt--~~kimkLrGHT--dNVr~ll~~dDGt~~l 229 (735)
T KOG0308|consen 154 LVASFNNVTVNSLGSGPKDSIYSLAMNQTGTIIVSGGTEKDLRLWDPRT--CKKIMKLRGHT--DNVRVLLVNDDGTRLL 229 (735)
T ss_pred hhhhccccccccCCCCCccceeeeecCCcceEEEecCcccceEEecccc--ccceeeeeccc--cceEEEEEcCCCCeEe
Confidence 2111111111112237888999999999999999999999999999877 34556666775 4477789999999999
Q ss_pred EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
+++.||+|++||+...++ +.++..|+..|+++..+|+- ..+.+|+.||.|..=|+.+.
T Consensus 230 s~sSDgtIrlWdLgqQrC-l~T~~vH~e~VWaL~~~~sf-~~vYsG~rd~~i~~Tdl~n~ 287 (735)
T KOG0308|consen 230 SASSDGTIRLWDLGQQRC-LATYIVHKEGVWALQSSPSF-THVYSGGRDGNIYRTDLRNP 287 (735)
T ss_pred ecCCCceEEeeeccccce-eeeEEeccCceEEEeeCCCc-ceEEecCCCCcEEecccCCc
Confidence 999999999999988777 57799999999999999988 89999999999999999984
No 119
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.95 E-value=3.9e-25 Score=204.02 Aligned_cols=280 Identities=12% Similarity=0.095 Sum_probs=196.1
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE-EEEeCCCcEEEEeCCCCeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI-LTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l-~s~~~dg~i~iwd~~~~~~~ 143 (512)
++++++++.|+.|++||..++.. +..+..+. .+.+++|+|+++.+ ++++.++.|++||..+++..
T Consensus 1 ~~~~~s~~~d~~v~~~d~~t~~~-------------~~~~~~~~-~~~~l~~~~dg~~l~~~~~~~~~v~~~d~~~~~~~ 66 (300)
T TIGR03866 1 EKAYVSNEKDNTISVIDTATLEV-------------TRTFPVGQ-RPRGITLSKDGKLLYVCASDSDTIQVIDLATGEVI 66 (300)
T ss_pred CcEEEEecCCCEEEEEECCCCce-------------EEEEECCC-CCCceEECCCCCEEEEEECCCCeEEEEECCCCcEE
Confidence 35788999999999999876532 44455443 46789999999877 56778899999999999887
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
..+..+. .+..++|+|++..++++++.|+.|++||+++.+..... .....+
T Consensus 67 ~~~~~~~-~~~~~~~~~~g~~l~~~~~~~~~l~~~d~~~~~~~~~~----------------------------~~~~~~ 117 (300)
T TIGR03866 67 GTLPSGP-DPELFALHPNGKILYIANEDDNLVTVIDIETRKVLAEI----------------------------PVGVEP 117 (300)
T ss_pred EeccCCC-CccEEEECCCCCEEEEEcCCCCeEEEEECCCCeEEeEe----------------------------eCCCCc
Confidence 7776544 35678999998434455667899999999864322111 112246
Q ss_pred EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEE
Q 010390 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYN 302 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d 302 (512)
.+++|+|++..++++...+..+.+||.++.+..... .....+..++|++++++|++++ .++.|++||
T Consensus 118 ~~~~~~~dg~~l~~~~~~~~~~~~~d~~~~~~~~~~------------~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d 185 (300)
T TIGR03866 118 EGMAVSPDGKIVVNTSETTNMAHFIDTKTYEIVDNV------------LVDQRPRFAEFTADGKELWVSSEIGGTVSVID 185 (300)
T ss_pred ceEEECCCCCEEEEEecCCCeEEEEeCCCCeEEEEE------------EcCCCccEEEECCCCCEEEEEcCCCCEEEEEE
Confidence 789999999998886643346778898876543321 1122356799999999886554 689999999
Q ss_pred cccCCCCceEeeeec---eeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCe
Q 010390 303 VLQLDKGPIQHFSGC---RIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK 378 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~ 378 (512)
+.+.+......+... ........++|+|+++++++ .+.++.+.+||+.+.+.. ... .+...+.+++|+|++ .+
T Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~s~dg~~~~~~~~~~~~i~v~d~~~~~~~-~~~-~~~~~~~~~~~~~~g-~~ 262 (300)
T TIGR03866 186 VATRKVIKKITFEIPGVHPEAVQPVGIKLTKDGKTAFVALGPANRVAVVDAKTYEVL-DYL-LVGQRVWQLAFTPDE-KY 262 (300)
T ss_pred cCcceeeeeeeecccccccccCCccceEECCCCCEEEEEcCCCCeEEEEECCCCcEE-EEE-EeCCCcceEEECCCC-CE
Confidence 976432111111110 01112345789999998644 445678999999876542 222 344579999999999 67
Q ss_pred EEEE-eCCCcEEEEeCCCCcccccc
Q 010390 379 IVTS-SDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 379 l~s~-~~dg~i~vwd~~~~~~~~~~ 402 (512)
|+++ +.+|.|++||+.+++++..+
T Consensus 263 l~~~~~~~~~i~v~d~~~~~~~~~~ 287 (300)
T TIGR03866 263 LLTTNGVSNDVSVIDVAALKVIKSI 287 (300)
T ss_pred EEEEcCCCCeEEEEECCCCcEEEEE
Confidence 7765 57999999999999877654
No 120
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=3.9e-26 Score=200.24 Aligned_cols=308 Identities=19% Similarity=0.258 Sum_probs=229.4
Q ss_pred ceeeeeeEeecCCc-cCCcceEEEEEecCCCcEEEEe-eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE
Q 010390 36 FTEIGAVTVEHHGE-ETPPLAVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD 113 (512)
Q Consensus 36 ~~~~~~~~~~~~gh-~~~v~~v~~~~~s~~~~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~ 113 (512)
....|.....++|- ...-.++... ++.|++++ .....|.+|.+..... .....--.+.|.+
T Consensus 24 dl~TGt~~~~ykg~~~a~~~sl~~l----~~~yllsaq~~rp~l~vw~i~k~~~-------------~~q~~v~Pg~v~a 86 (476)
T KOG0646|consen 24 DLRTGTSLLQYKGSYLAQAASLTAL----NNEYLLSAQLKRPLLHVWEILKKDQ-------------VVQYIVLPGPVHA 86 (476)
T ss_pred ecCCCceeEEecCcccccchhhhhh----chhheeeecccCccccccccCchhh-------------hhhhcccccceee
Confidence 34455555555554 3333333331 23556555 4455799999865532 2222334678999
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 114 LCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
++-+|+|.+|+.|+..|.|++|.+.+|..+..+..|-..|+|+.|+-++ .+|++|+.||.|.+|++..--....
T Consensus 87 l~s~n~G~~l~ag~i~g~lYlWelssG~LL~v~~aHYQ~ITcL~fs~dg-s~iiTgskDg~V~vW~l~~lv~a~~----- 160 (476)
T KOG0646|consen 87 LASSNLGYFLLAGTISGNLYLWELSSGILLNVLSAHYQSITCLKFSDDG-SHIITGSKDGAVLVWLLTDLVSADN----- 160 (476)
T ss_pred eecCCCceEEEeecccCcEEEEEeccccHHHHHHhhccceeEEEEeCCC-cEEEecCCCccEEEEEEEeeccccc-----
Confidence 9999999999999899999999999999999999999999999999988 9999999999999999753211110
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
....+....+..|.-+|+++...+. ...+++++ .|.++++||+..+..+.....+
T Consensus 161 -------------~~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS-~D~t~k~wdlS~g~LLlti~fp--------- 217 (476)
T KOG0646|consen 161 -------------DHSVKPLHIFSDHTLSITDLQIGSGGTNARLYTAS-EDRTIKLWDLSLGVLLLTITFP--------- 217 (476)
T ss_pred -------------CCCccceeeeccCcceeEEEEecCCCccceEEEec-CCceEEEEEeccceeeEEEecC---------
Confidence 0023445577889999999988765 44566644 8999999999999887665444
Q ss_pred ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC--------------CCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD--------------KGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~--------------~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
..+.+++.+|.+..+++|+.+|.|.+.++.... ...+..+.++.....|+|++++-||.+|++
T Consensus 218 ---~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~ITcLais~DgtlLlS 294 (476)
T KOG0646|consen 218 ---SSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAITCLAISTDGTLLLS 294 (476)
T ss_pred ---CcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcceeEEEEecCccEEEe
Confidence 349999999999999999999999999975543 223455667777678999999999999999
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
|+.||.|+|||+.+.++ ++++....++|+.+.+.|-.+..+..-.....+-.|++
T Consensus 295 Gd~dg~VcvWdi~S~Q~-iRtl~~~kgpVtnL~i~~~~~~~~l~~~~~ps~~~~~l 349 (476)
T KOG0646|consen 295 GDEDGKVCVWDIYSKQC-IRTLQTSKGPVTNLQINPLERGIILFEHKQPSLPNPHL 349 (476)
T ss_pred eCCCCCEEEEecchHHH-HHHHhhhccccceeEeeccccceecccccCccCCchHh
Confidence 99999999999998776 45665568899999997755333433333344444443
No 121
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.95 E-value=4.7e-26 Score=191.00 Aligned_cols=310 Identities=16% Similarity=0.302 Sum_probs=231.9
Q ss_pred cCCccCCcceEEEEEecCCC--cEEEEeeCCCcEEEEECCCCCCccccccccccccceecc--ccCCCcEEEEEEecC--
Q 010390 46 HHGEETPPLAVSFCKTSKNS--HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW--VAHQNAIFDLCWIKE-- 119 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~--~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~--~~h~~~V~~l~~s~~-- 119 (512)
..+|..+|++++|.+++.-+ ..+|+.+.+ .+.||+...... ...++.+ ..|.+..+.++|+-+
T Consensus 34 ~ed~~~~I~gv~fN~~~~~~e~~vfatvG~~-rvtiy~c~~d~~----------ir~lq~y~D~d~~Esfytcsw~yd~~ 102 (385)
T KOG1034|consen 34 KEDHNKPIFGVAFNSFLGCDEPQVFATVGGN-RVTIYECPGDGG----------IRLLQSYADEDHDESFYTCSWSYDSN 102 (385)
T ss_pred hccCCCccceeeeehhcCCCCCceEEEeCCc-EEEEEEECCccc----------eeeeeeccCCCCCcceEEEEEEecCC
Confidence 45689999999998776544 467777754 799998765421 1112222 247788999999874
Q ss_pred --CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 120 --DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 120 --~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
..+||.|+.-|.|+|.|+.++++...+.+|...|+.|.++|+.++++++++.|..|++|++++..++..+.
T Consensus 103 ~~~p~la~~G~~GvIrVid~~~~~~~~~~~ghG~sINeik~~p~~~qlvls~SkD~svRlwnI~~~~Cv~VfG------- 175 (385)
T KOG1034|consen 103 TGNPFLAAGGYLGVIRVIDVVSGQCSKNYRGHGGSINEIKFHPDRPQLVLSASKDHSVRLWNIQTDVCVAVFG------- 175 (385)
T ss_pred CCCeeEEeecceeEEEEEecchhhhccceeccCccchhhhcCCCCCcEEEEecCCceEEEEeccCCeEEEEec-------
Confidence 45788999999999999999999999999999999999999999999999999999999999876654331
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-----------Ccc-
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP-----------HAE- 265 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~-----------~~~- 265 (512)
-..+|...|.++.|+.++..++++| .|..|++|++...+........ .+.
T Consensus 176 -----------------G~egHrdeVLSvD~~~~gd~i~ScG-mDhslk~W~l~~~~f~~~lE~s~~~~~~~t~~pfpt~ 237 (385)
T KOG1034|consen 176 -----------------GVEGHRDEVLSVDFSLDGDRIASCG-MDHSLKLWRLNVKEFKNKLELSITYSPNKTTRPFPTP 237 (385)
T ss_pred -----------------ccccccCcEEEEEEcCCCCeeeccC-CcceEEEEecChhHHhhhhhhhcccCCCCccCcCCcc
Confidence 3458899999999999999998866 8999999999954322211111 000
Q ss_pred -----ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC------------ceEeeeeceeceeEEEEEE
Q 010390 266 -----SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG------------PIQHFSGCRIESFYVKSEI 328 (512)
Q Consensus 266 -----~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~------------~~~~~~~~~~~~~~~~~~~ 328 (512)
.-.....|...|.|+.|- |.++++-+.++.|..|.....+.. .+..+.-.....+....+|
T Consensus 238 ~~~fp~fst~diHrnyVDCvrw~--gd~ilSkscenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~c~iWfirf~~ 315 (385)
T KOG1034|consen 238 KTHFPDFSTTDIHRNYVDCVRWF--GDFILSKSCENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPMCDIWFIRFAF 315 (385)
T ss_pred ccccccccccccccchHHHHHHH--hhheeecccCceEEEEecchhhhhhhccCCCccceeeeeEeccCccceEEEEEee
Confidence 001234566667777775 478999999999999987322111 1222233334455677888
Q ss_pred CCCCCEEEEecCCCCEEEEecCCCCCCC-ceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 329 CPNASHILSGSSDGNAYVWQVNKPQADP-IKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 329 s~~~~~l~~g~~dg~i~iw~~~~~~~~~-~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.|-+++||.|...|.|++||++...... .++..+ ...|...+|+.|+ .+|+...+|++|.-||..
T Consensus 316 d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dg-s~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 316 DPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDG-SILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccC-cEEEEEeCCCcEEEEEee
Confidence 9999999999999999999998776532 233222 4579999999999 899999999999999864
No 122
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.95 E-value=2.2e-25 Score=185.34 Aligned_cols=268 Identities=19% Similarity=0.297 Sum_probs=194.2
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCCEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDTNI 123 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l 123 (512)
-.||.+-|.+|.| .+-|+.+|+|+.|+.|+|||.++... .-.....++.|.+.|..+.|.+ -|+.+
T Consensus 9 ~s~h~DlihdVs~---D~~GRRmAtCSsDq~vkI~d~~~~s~---------~W~~Ts~Wrah~~Si~rV~WAhPEfGqvv 76 (361)
T KOG2445|consen 9 DSGHKDLIHDVSF---DFYGRRMATCSSDQTVKIWDSTSDSG---------TWSCTSSWRAHDGSIWRVVWAHPEFGQVV 76 (361)
T ss_pred ccCCcceeeeeee---cccCceeeeccCCCcEEEEeccCCCC---------ceEEeeeEEecCCcEEEEEecCccccceE
Confidence 3578999999999 99999999999999999999765432 2244677899999999999976 68999
Q ss_pred EEEeCCCcEEEEeCCCC---------eeeecccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 124 LTASGDQTIKIWDAEKK---------KCTGALMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~---------~~~~~~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
|+++.|+++.||.-... ....++......|+.+.|.|.. +-.|++++.||.||||+.-..-.
T Consensus 77 A~cS~Drtv~iWEE~~~~~~~~~~~Wv~~ttl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~n-------- 148 (361)
T KOG2445|consen 77 ATCSYDRTVSIWEEQEKSEEAHGRRWVRRTTLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMN-------- 148 (361)
T ss_pred EEEecCCceeeeeecccccccccceeEEEEEeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccc--------
Confidence 99999999999975211 2345566677899999999853 36789999999999998753221
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
+.-|.+...-..... ....+
T Consensus 149 ---------------------------------------------------Ls~W~Lq~Ei~~~~~---------pp~~~ 168 (361)
T KOG2445|consen 149 ---------------------------------------------------LSQWTLQHEIQNVID---------PPGKN 168 (361)
T ss_pred ---------------------------------------------------cccchhhhhhhhccC---------Ccccc
Confidence 222322211100000 12223
Q ss_pred ccCeeEEEeCCC---CCEEEEEecC-----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC----CCEEEEecCC
Q 010390 274 LHGISSLSQDSN---GVFLTASCMD-----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN----ASHILSGSSD 341 (512)
Q Consensus 274 ~~~i~~~~~~~~---~~~l~~~~~d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~----~~~l~~g~~d 341 (512)
.....|+.|++. ..+|++|+.+ +.++||.......+-.....-..+..+|..++|.|+ ...||+++.|
T Consensus 169 ~~~~~CvsWn~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kD 248 (361)
T KOG2445|consen 169 KQPCFCVSWNPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKD 248 (361)
T ss_pred cCcceEEeeccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecC
Confidence 344667777753 3567777765 588899875543333322222245678999999997 3578999999
Q ss_pred CCEEEEecCCCC-------------------CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 342 GNAYVWQVNKPQ-------------------ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 342 g~i~iw~~~~~~-------------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
| |+||.+.... ..+..+..|.+.|..+.|+-.| ..|++.|+||.||+|...-
T Consensus 249 g-v~I~~v~~~~s~i~~ee~~~~~~~~~l~v~~vs~~~~H~~~VWrv~wNmtG-tiLsStGdDG~VRLWkany 319 (361)
T KOG2445|consen 249 G-VRIFKVKVARSAIEEEEVLAPDLMTDLPVEKVSELDDHNGEVWRVRWNMTG-TILSSTGDDGCVRLWKANY 319 (361)
T ss_pred c-EEEEEEeeccchhhhhcccCCCCccccceEEeeeccCCCCceEEEEEeeee-eEEeecCCCceeeehhhhh
Confidence 9 9999987411 1123467899999999999999 8999999999999998653
No 123
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.95 E-value=6.8e-25 Score=207.77 Aligned_cols=287 Identities=15% Similarity=0.182 Sum_probs=221.2
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
..|++.-+.|+| .|+|.+|.+++.||.|++|+...... .-..+.-+...|.+++. ++.+|++|
T Consensus 10 yaht~G~t~i~~---d~~gefi~tcgsdg~ir~~~~~sd~e------------~P~ti~~~g~~v~~ia~--~s~~f~~~ 72 (933)
T KOG1274|consen 10 YAHTGGLTLICY---DPDGEFICTCGSDGDIRKWKTNSDEE------------EPETIDISGELVSSIAC--YSNHFLTG 72 (933)
T ss_pred hhccCceEEEEE---cCCCCEEEEecCCCceEEeecCCccc------------CCchhhccCceeEEEee--cccceEEe
Confidence 457777778888 99999999999999999999765421 01112227788888876 45699999
Q ss_pred eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
+.+++|.+|.+..++.-..+....-++.+++|+.+| .+++.|+.|-.|++-++.+....
T Consensus 73 s~~~tv~~y~fps~~~~~iL~Rftlp~r~~~v~g~g-~~iaagsdD~~vK~~~~~D~s~~-------------------- 131 (933)
T KOG1274|consen 73 SEQNTVLRYKFPSGEEDTILARFTLPIRDLAVSGSG-KMIAAGSDDTAVKLLNLDDSSQE-------------------- 131 (933)
T ss_pred eccceEEEeeCCCCCccceeeeeeccceEEEEecCC-cEEEeecCceeEEEEeccccchh--------------------
Confidence 999999999999988776676677899999999988 89999999999999998765433
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc-ccCeeEEEeCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR-LHGISSLSQDSN 285 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~~~i~~~~~~~~ 285 (512)
..+.+|..+|.++.|+|++..|+++. -||.|++||+.++........... ..... ...+..++|+|+
T Consensus 132 -------~~lrgh~apVl~l~~~p~~~fLAvss-~dG~v~iw~~~~~~~~~tl~~v~k----~n~~~~s~i~~~~aW~Pk 199 (933)
T KOG1274|consen 132 -------KVLRGHDAPVLQLSYDPKGNFLAVSS-CDGKVQIWDLQDGILSKTLTGVDK----DNEFILSRICTRLAWHPK 199 (933)
T ss_pred -------eeecccCCceeeeeEcCCCCEEEEEe-cCceEEEEEcccchhhhhcccCCc----cccccccceeeeeeecCC
Confidence 36778999999999999999999866 599999999998876654432222 11111 455788999999
Q ss_pred CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCC
Q 010390 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGE 365 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~ 365 (512)
+..|++.+.|+.|.+|+....+. ...+........+..++|+|+|+|||+++.||.|.|||.++-.. ......
T Consensus 200 ~g~la~~~~d~~Vkvy~r~~we~--~f~Lr~~~~ss~~~~~~wsPnG~YiAAs~~~g~I~vWnv~t~~~-----~~~~~~ 272 (933)
T KOG1274|consen 200 GGTLAVPPVDNTVKVYSRKGWEL--QFKLRDKLSSSKFSDLQWSPNGKYIAASTLDGQILVWNVDTHER-----HEFKRA 272 (933)
T ss_pred CCeEEeeccCCeEEEEccCCcee--heeecccccccceEEEEEcCCCcEEeeeccCCcEEEEecccchh-----ccccce
Confidence 88899999999999999876543 33444433444488899999999999999999999999987211 223568
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390 366 VTAVNWCPNEAGKIVTSSDDYTVRLW 391 (512)
Q Consensus 366 v~~v~~~~~~~~~l~s~~~dg~i~vw 391 (512)
|++++|.|+. ..+-.-..-|...+|
T Consensus 273 Vc~~aw~p~~-n~it~~~~~g~~~~~ 297 (933)
T KOG1274|consen 273 VCCEAWKPNA-NAITLITALGTLGVS 297 (933)
T ss_pred eEEEecCCCC-CeeEEEeeccccccC
Confidence 9999999998 444333334443333
No 124
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=4.7e-25 Score=193.16 Aligned_cols=288 Identities=15% Similarity=0.189 Sum_probs=221.9
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC-EEEEEeC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT-NILTASG 128 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~-~l~s~~~ 128 (512)
.+.|++|.| +|...+|.+++.||.++||.++.... ..++.+.--..+|.+.+|.|+|. .+++++.
T Consensus 213 ~~~I~sv~F---Hp~~plllvaG~d~~lrifqvDGk~N-----------~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~r 278 (514)
T KOG2055|consen 213 HGGITSVQF---HPTAPLLLVAGLDGTLRIFQVDGKVN-----------PKLQSIHLEKFPIQKAEFAPNGHSVIFTSGR 278 (514)
T ss_pred cCCceEEEe---cCCCceEEEecCCCcEEEEEecCccC-----------hhheeeeeccCccceeeecCCCceEEEeccc
Confidence 467888888 99999999999999999999986543 34666666678999999999999 8889999
Q ss_pred CCcEEEEeCCCCeeee--cccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 129 DQTIKIWDAEKKKCTG--ALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~--~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
...++.||+.+.+... ...++. ..+.....++++ ++|+..+..|.|.+.-..+++.+...
T Consensus 279 rky~ysyDle~ak~~k~~~~~g~e~~~~e~FeVShd~-~fia~~G~~G~I~lLhakT~eli~s~---------------- 341 (514)
T KOG2055|consen 279 RKYLYSYDLETAKVTKLKPPYGVEEKSMERFEVSHDS-NFIAIAGNNGHIHLLHAKTKELITSF---------------- 341 (514)
T ss_pred ceEEEEeeccccccccccCCCCcccchhheeEecCCC-CeEEEcccCceEEeehhhhhhhhhee----------------
Confidence 9999999999886543 333443 356677889988 89999999999999988877765544
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
...+.|..++|+.+++.++++| .+|.|.+||++...+...... ...-.-++++.+++
T Consensus 342 ------------KieG~v~~~~fsSdsk~l~~~~-~~GeV~v~nl~~~~~~~rf~D----------~G~v~gts~~~S~n 398 (514)
T KOG2055|consen 342 ------------KIEGVVSDFTFSSDSKELLASG-GTGEVYVWNLRQNSCLHRFVD----------DGSVHGTSLCISLN 398 (514)
T ss_pred ------------eeccEEeeEEEecCCcEEEEEc-CCceEEEEecCCcceEEEEee----------cCccceeeeeecCC
Confidence 2356799999999999999877 589999999999877654321 11123467888899
Q ss_pred CCEEEEEecCCeEEEEEccc----CCCCceEeeeeceeceeEEEEEECCCCCEEEEecC--CCCEEEEecCCCCCCCc--
Q 010390 286 GVFLTASCMDHRIYLYNVLQ----LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS--DGNAYVWQVNKPQADPI-- 357 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~----~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~--dg~i~iw~~~~~~~~~~-- 357 (512)
+.+||+|+..|.|.|||..+ ...+++..+. .....|..++|+++.+.||.++. +..+++-.+.+.....-
T Consensus 399 g~ylA~GS~~GiVNIYd~~s~~~s~~PkPik~~d--NLtt~Itsl~Fn~d~qiLAiaS~~~knalrLVHvPS~TVFsNfP 476 (514)
T KOG2055|consen 399 GSYLATGSDSGIVNIYDGNSCFASTNPKPIKTVD--NLTTAITSLQFNHDAQILAIASRVKKNALRLVHVPSCTVFSNFP 476 (514)
T ss_pred CceEEeccCcceEEEeccchhhccCCCCchhhhh--hhheeeeeeeeCcchhhhhhhhhccccceEEEeccceeeeccCC
Confidence 99999999999999999643 2233443333 23456888999999999987775 56788887765322100
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.....-+.|+|++|+|.+ .+|+.|..+|.+.+|.+.
T Consensus 477 ~~n~~vg~vtc~aFSP~s-G~lAvGNe~grv~l~kL~ 512 (514)
T KOG2055|consen 477 TSNTKVGHVTCMAFSPNS-GYLAVGNEAGRVHLFKLH 512 (514)
T ss_pred CCCCcccceEEEEecCCC-ceEEeecCCCceeeEeec
Confidence 112223569999999998 899999999999999874
No 125
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.94 E-value=1.8e-25 Score=190.85 Aligned_cols=287 Identities=20% Similarity=0.333 Sum_probs=211.3
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccc---ccccccccceeccccCCCcEEEEE
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC---HRENAEKARISDWVAHQNAIFDLC 115 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~---~~~~~~~~~~~~~~~h~~~V~~l~ 115 (512)
...+.....+|.+.++.|...++. +..+.|+=+..|.|.||++......+.. .....+..++.++.+|+..=++++
T Consensus 140 ~P~~~~~~i~h~g~~NRvr~~~~~-~~~~~aswse~G~V~Vw~l~~~l~~l~~~~~~~~~s~~~Pl~t~~ghk~EGy~Ld 218 (440)
T KOG0302|consen 140 KPQIEMKSIPHYGGINRVRVSRLG-NEVLCASWSENGRVQVWDLAPHLNALSEPGLEVKDSEFRPLFTFNGHKGEGYGLD 218 (440)
T ss_pred cccccccccccccccceeeecccC-CcceeeeecccCcEEEEEchhhhhhhcCccccccccccCceEEecccCccceeee
Confidence 456667778899999999884432 4457777799999999998654322111 122356678999999999999999
Q ss_pred Eec-CCCEEEEEeCCCcEEEEeCCCCee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 116 WIK-EDTNILTASGDQTIKIWDAEKKKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 116 ~s~-~~~~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
||| ....|++|..-+.|++|...++.- ...+.+|+..|..++|+|.....|++|+.||+|+|||++.+......
T Consensus 219 WSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDiRs~~~~~~~-- 296 (440)
T KOG0302|consen 219 WSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQRPFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDIRSGPKKAAV-- 296 (440)
T ss_pred cccccccccccCccccceEeeeeccCceeecCccccccccchhhhccCCccCceEEeeecCceEEEEEecCCCcccee--
Confidence 999 333588888889999999988753 34567799999999999998899999999999999999977433321
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
..++|.+.|+-|.|+.... ++++|++||+++|||++..+.. .+...+.
T Consensus 297 -----------------------~~kAh~sDVNVISWnr~~~-lLasG~DdGt~~iwDLR~~~~~--------~pVA~fk 344 (440)
T KOG0302|consen 297 -----------------------STKAHNSDVNVISWNRREP-LLASGGDDGTLSIWDLRQFKSG--------QPVATFK 344 (440)
T ss_pred -----------------------EeeccCCceeeEEccCCcc-eeeecCCCceEEEEEhhhccCC--------CcceeEE
Confidence 3368899999999999888 5556889999999999976543 1222688
Q ss_pred ccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 272 TRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 272 ~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
.|..+|+++.|+|. ...+++++.|.+|.+||+.-. ++..-...-...+ +-|+
T Consensus 345 ~Hk~pItsieW~p~e~s~iaasg~D~QitiWDlsvE-----------------------~D~ee~~~~a~~~---L~dl- 397 (440)
T KOG0302|consen 345 YHKAPITSIEWHPHEDSVIAASGEDNQITIWDLSVE-----------------------ADEEEIDQEAAEG---LQDL- 397 (440)
T ss_pred eccCCeeEEEeccccCceEEeccCCCcEEEEEeecc-----------------------CChhhhccccccc---hhcC-
Confidence 89999999999985 457888889999999997431 1100000000011 1122
Q ss_pred CCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 351 KPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 351 ~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
+...+.-| ...|..+.|++.-+.+|++.+.|| +.||.
T Consensus 398 ----PpQLLFVHqGQke~KevhWH~QiPG~lvsTa~dG-fnVfk 436 (440)
T KOG0302|consen 398 ----PPQLLFVHQGQKEVKEVHWHRQIPGLLVSTAIDG-FNVFK 436 (440)
T ss_pred ----CceeEEEecchhHhhhheeccCCCCeEEEecccc-eeEEE
Confidence 23344445 346888999999889999999998 55553
No 126
>KOG0646 consensus WD40 repeat protein [General function prediction only]
Probab=99.94 E-value=2.5e-25 Score=195.21 Aligned_cols=284 Identities=17% Similarity=0.237 Sum_probs=209.8
Q ss_pred EEeeCCC-cEEEEECCCCCCccccccccccccceeccccC-CCcEEEEEEecCCCEEEEEeC-CCcEEEEeCCCCeeeec
Q 010390 69 AVSDEDG-YVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTNILTASG-DQTIKIWDAEKKKCTGA 145 (512)
Q Consensus 69 atg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~-dg~i~iwd~~~~~~~~~ 145 (512)
.+++.|. .+.+||++++.. ..++++. ...-.++..- .+.+++++.. ...|.+|.+........
T Consensus 11 sssS~d~~~~~~~dl~TGt~-------------~~~ykg~~~a~~~sl~~l-~~~yllsaq~~rp~l~vw~i~k~~~~~q 76 (476)
T KOG0646|consen 11 SSSSFDPINCIVWDLRTGTS-------------LLQYKGSYLAQAASLTAL-NNEYLLSAQLKRPLLHVWEILKKDQVVQ 76 (476)
T ss_pred eccCCCCcceeEEecCCCce-------------eEEecCcccccchhhhhh-chhheeeecccCccccccccCchhhhhh
Confidence 3344444 499999998854 2333332 1111111111 3356665544 45799999876655543
Q ss_pred ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
..--.++|.+++-+|.| .+|+.|+..|.|++|.+.++..+. .+.+|...|+|
T Consensus 77 ~~v~Pg~v~al~s~n~G-~~l~ag~i~g~lYlWelssG~LL~---------------------------v~~aHYQ~ITc 128 (476)
T KOG0646|consen 77 YIVLPGPVHALASSNLG-YFLLAGTISGNLYLWELSSGILLN---------------------------VLSAHYQSITC 128 (476)
T ss_pred hcccccceeeeecCCCc-eEEEeecccCcEEEEEeccccHHH---------------------------HHHhhccceeE
Confidence 33356789999999988 888888899999999999887655 44678889999
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNV 303 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~ 303 (512)
+.|+.|+..+++ |+.||.|.+|++...-..... ....+...+..|.-+|+.+...+.| .+|++++.|.++++||+
T Consensus 129 L~fs~dgs~iiT-gskDg~V~vW~l~~lv~a~~~--~~~~p~~~f~~HtlsITDl~ig~Gg~~~rl~TaS~D~t~k~wdl 205 (476)
T KOG0646|consen 129 LKFSDDGSHIIT-GSKDGAVLVWLLTDLVSADND--HSVKPLHIFSDHTLSITDLQIGSGGTNARLYTASEDRTIKLWDL 205 (476)
T ss_pred EEEeCCCcEEEe-cCCCccEEEEEEEeecccccC--CCccceeeeccCcceeEEEEecCCCccceEEEecCCceEEEEEe
Confidence 999999999998 558999999987643222111 1223334678899999999988764 58999999999999999
Q ss_pred ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC---------------CCCceeccccC--Ce
Q 010390 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ---------------ADPIKLKSHDG--EV 366 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~---------------~~~~~~~~h~~--~v 366 (512)
..+.. +..+ .....+.+++.+|-++.+++|+.+|.|.+.++.... .....+.+|.+ .|
T Consensus 206 S~g~L--Llti---~fp~si~av~lDpae~~~yiGt~~G~I~~~~~~~~~~~~~~v~~k~~~~~~t~~~~~~Gh~~~~~I 280 (476)
T KOG0646|consen 206 SLGVL--LLTI---TFPSSIKAVALDPAERVVYIGTEEGKIFQNLLFKLSGQSAGVNQKGRHEENTQINVLVGHENESAI 280 (476)
T ss_pred cccee--eEEE---ecCCcceeEEEcccccEEEecCCcceEEeeehhcCCcccccccccccccccceeeeeccccCCcce
Confidence 76432 2222 122457789999999999999999999998876432 11235678887 99
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 367 TAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
+|++.+-|| .+|++|+.||.|+|||+.+.+++++..
T Consensus 281 TcLais~Dg-tlLlSGd~dg~VcvWdi~S~Q~iRtl~ 316 (476)
T KOG0646|consen 281 TCLAISTDG-TLLLSGDEDGKVCVWDIYSKQCIRTLQ 316 (476)
T ss_pred eEEEEecCc-cEEEeeCCCCCEEEEecchHHHHHHHh
Confidence 999999999 999999999999999999999999866
No 127
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.94 E-value=1e-25 Score=196.48 Aligned_cols=267 Identities=19% Similarity=0.275 Sum_probs=200.0
Q ss_pred cCCcceEEEEEe----cCCCcEEEEeeCCCcEEEEECCCCCCcccccccc---c-----cccceeccccCCCcEEEEEEe
Q 010390 50 ETPPLAVSFCKT----SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN---A-----EKARISDWVAHQNAIFDLCWI 117 (512)
Q Consensus 50 ~~~v~~v~~~~~----s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~---~-----~~~~~~~~~~h~~~V~~l~~s 117 (512)
...+.|+.|..+ ..-|+|+|.|+.|..|.|||+.-....+.+.... . ..+.-..-.+|+..|.+++|+
T Consensus 173 pafPLC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n 252 (463)
T KOG0270|consen 173 PAFPLCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWN 252 (463)
T ss_pred cCcchhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhc
Confidence 345678888665 1235799999999999999986544333322111 0 111122235799999999998
Q ss_pred cC-CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 118 KE-DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 118 ~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
.+ ...||+|+.|.+|++||+.++++..++..|.+.|.++.|+|..+..|++|+.|++|.+.|.+......
T Consensus 253 ~~~~nVLaSgsaD~TV~lWD~~~g~p~~s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~~V~l~D~R~~~~s~--------- 323 (463)
T KOG0270|consen 253 RNFRNVLASGSADKTVKLWDVDTGKPKSSITHHGKKVQTLEWHPYEPSVLLSGSYDGTVALKDCRDPSNSG--------- 323 (463)
T ss_pred cccceeEEecCCCceEEEEEcCCCCcceehhhcCCceeEEEecCCCceEEEeccccceEEeeeccCccccC---------
Confidence 84 45678999999999999999999999999999999999999999999999999999999998533221
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
..-...+.|..++|.|.....+.++..||.|+-+|+|+...... ....|..+
T Consensus 324 ------------------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~~~vw----------t~~AHd~~ 375 (463)
T KOG0270|consen 324 ------------------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPGKPVW----------TLKAHDDE 375 (463)
T ss_pred ------------------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCCCcee----------EEEeccCC
Confidence 11123568999999999998888899999999999998753322 68899999
Q ss_pred eeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCC
Q 010390 277 ISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 277 i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~ 354 (512)
|.++++++. ..+|++++.|+.+++|++.......+..... . -....|+++.|+-. +++.|+..+.++|||+.+...
T Consensus 376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~~v~~~~~-~-~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPKSVKEHSF-K-LGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cceEEecCCCCcceeeccccceEEEEeecCCCCcccccccc-c-ccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 999999875 4578899999999999986544332221111 1 11245567777754 567888888899999987654
Q ss_pred C
Q 010390 355 D 355 (512)
Q Consensus 355 ~ 355 (512)
.
T Consensus 454 V 454 (463)
T KOG0270|consen 454 V 454 (463)
T ss_pred H
Confidence 3
No 128
>KOG1408 consensus WD40 repeat protein [Function unknown]
Probab=99.94 E-value=7.2e-25 Score=201.83 Aligned_cols=315 Identities=16% Similarity=0.223 Sum_probs=234.3
Q ss_pred EecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-----------CCEEEEEeC
Q 010390 60 KTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-----------DTNILTASG 128 (512)
Q Consensus 60 ~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-----------~~~l~s~~~ 128 (512)
.|++..+.|.+...|..++|||+++-.. ......+..|...|+++.-.|. ...++|++.
T Consensus 331 ~Fdet~~klscVYndhSlYvWDvrD~~k----------vgk~~s~lyHS~ciW~Ve~~p~nv~~~~~aclp~~cF~TCSs 400 (1080)
T KOG1408|consen 331 QFDETTDKLSCVYNDHSLYVWDVRDVNK----------VGKCSSMLYHSACIWDVENLPCNVHSPTAACLPRGCFTTCSS 400 (1080)
T ss_pred EecCCCceEEEEEcCceEEEEecccccc----------ccceeeeeeccceeeeeccccccccCcccccCCccceeEecC
Confidence 4588899999999999999999987532 2335556679999998887661 234889999
Q ss_pred CCcEEEEeCCCCe---ee----------------------------------ecccCcCCCEEEEEeeCCCCCeEEEEeC
Q 010390 129 DQTIKIWDAEKKK---CT----------------------------------GALMGHTGSIKSLCSHPTNSDILVSGSR 171 (512)
Q Consensus 129 dg~i~iwd~~~~~---~~----------------------------------~~~~~h~~~v~~l~~~~~~~~~l~s~~~ 171 (512)
|++|++||+..+. .. ...-+....+.+++.+|++ ++|++|..
T Consensus 401 D~TIRlW~l~~ctnn~vyrRNils~~l~ki~y~d~~~q~~~d~~~~~fdka~~s~~d~r~G~R~~~vSp~g-qhLAsGDr 479 (1080)
T KOG1408|consen 401 DGTIRLWDLAFCTNNQVYRRNILSANLSKIPYEDSTQQIMHDASAGIFDKALVSTCDSRFGFRALAVSPDG-QHLASGDR 479 (1080)
T ss_pred CCcEEEeecccccccceeecccchhhhhcCccccCchhhhhhccCCcccccchhhcCcccceEEEEECCCc-ceecccCc
Confidence 9999999987531 00 0001134579999999998 99999999
Q ss_pred CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEe
Q 010390 172 DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWD 249 (512)
Q Consensus 172 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd 249 (512)
-|+|++|++.+.+... ...+|+..|.|+.|+.. +..|+++++.|..|.+||
T Consensus 480 ~GnlrVy~Lq~l~~~~---------------------------~~eAHesEilcLeyS~p~~~~kLLASasrdRlIHV~D 532 (1080)
T KOG1408|consen 480 GGNLRVYDLQELEYTC---------------------------FMEAHESEILCLEYSFPVLTNKLLASASRDRLIHVYD 532 (1080)
T ss_pred cCceEEEEehhhhhhh---------------------------heecccceeEEEeecCchhhhHhhhhccCCceEEEEe
Confidence 9999999998654332 55689999999999752 445666677999999999
Q ss_pred ccCccceecccCCCccccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEEcccCCCCceEee-eeceeceeEEEE
Q 010390 250 TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYNVLQLDKGPIQHF-SGCRIESFYVKS 326 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d~~~~~~~~~~~~-~~~~~~~~~~~~ 326 (512)
....-.+.. .+.+|...|+++.|..+| ..+++++.|..|.+--........+..- ........+..+
T Consensus 533 v~rny~l~q----------tld~HSssITsvKFa~~gln~~MiscGADksimFr~~qk~~~g~~f~r~t~t~~ktTlYDm 602 (1080)
T KOG1408|consen 533 VKRNYDLVQ----------TLDGHSSSITSVKFACNGLNRKMISCGADKSIMFRVNQKASSGRLFPRHTQTLSKTTLYDM 602 (1080)
T ss_pred cccccchhh----------hhcccccceeEEEEeecCCceEEEeccCchhhheehhccccCceeccccccccccceEEEe
Confidence 986554443 578888999999998877 6888998997765433222111111111 111123457789
Q ss_pred EECCCCCEEEEecCCCCEEEEecCCCCCCCcee---ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 327 EICPNASHILSGSSDGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
+..|..+++++++.|..|+||++.+++.. ..+ .+|++...-+...|.| .||++...|.++.++|+.+|+|+....
T Consensus 603 ~Vdp~~k~v~t~cQDrnirif~i~sgKq~-k~FKgs~~~eG~lIKv~lDPSg-iY~atScsdktl~~~Df~sgEcvA~m~ 680 (1080)
T KOG1408|consen 603 AVDPTSKLVVTVCQDRNIRIFDIESGKQV-KSFKGSRDHEGDLIKVILDPSG-IYLATSCSDKTLCFVDFVSGECVAQMT 680 (1080)
T ss_pred eeCCCcceEEEEecccceEEEecccccee-eeecccccCCCceEEEEECCCc-cEEEEeecCCceEEEEeccchhhhhhc
Confidence 99999999999999999999999998764 444 4567888899999999 899999999999999999999988633
Q ss_pred Cccccceeeeeccch-hcccccCC
Q 010390 404 PSSVRRRVMAIPSTE-CRKLFMNG 426 (512)
Q Consensus 404 ~~~~~~~~~~~~~~~-~~~~~~~~ 426 (512)
.+...++-+.+.+ |.+++...
T Consensus 681 --GHsE~VTG~kF~nDCkHlISvs 702 (1080)
T KOG1408|consen 681 --GHSEAVTGVKFLNDCKHLISVS 702 (1080)
T ss_pred --Ccchheeeeeecccchhheeec
Confidence 3444555555554 55555433
No 129
>KOG1539 consensus WD repeat protein [General function prediction only]
Probab=99.94 E-value=1.7e-24 Score=202.92 Aligned_cols=364 Identities=16% Similarity=0.156 Sum_probs=261.2
Q ss_pred cceEEEEEecCCC--cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 53 PLAVSFCKTSKNS--HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 53 v~~v~~~~~s~~~--~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
|.+|. +|.- +.++.|+.+|.+.||++++++ .+.+++++...|+++.=+|--+.++.|..+|
T Consensus 162 Ital~----HP~TYLNKIvvGs~~G~lql~Nvrt~K-------------~v~~f~~~~s~IT~ieqsPaLDVVaiG~~~G 224 (910)
T KOG1539|consen 162 ITALL----HPSTYLNKIVVGSSQGRLQLWNVRTGK-------------VVYTFQEFFSRITAIEQSPALDVVAIGLENG 224 (910)
T ss_pred eeeEe----cchhheeeEEEeecCCcEEEEEeccCc-------------EEEEecccccceeEeccCCcceEEEEeccCc
Confidence 66664 3433 578999999999999998874 4889999999999999999888999999999
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (512)
+|.|+++..++.+.+++...+.|++++|..||..++++|+..|.+.+||++.......
T Consensus 225 ~ViifNlK~dkil~sFk~d~g~VtslSFrtDG~p~las~~~~G~m~~wDLe~kkl~~v---------------------- 282 (910)
T KOG1539|consen 225 TVIIFNLKFDKILMSFKQDWGRVTSLSFRTDGNPLLASGRSNGDMAFWDLEKKKLINV---------------------- 282 (910)
T ss_pred eEEEEEcccCcEEEEEEccccceeEEEeccCCCeeEEeccCCceEEEEEcCCCeeeee----------------------
Confidence 9999999999999999855699999999999988999999999999999987654332
Q ss_pred ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-CCCCEE
Q 010390 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-SNGVFL 289 (512)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~~~~l 289 (512)
....|.+.+....|.+....+++++ .|..+++|-.+++...... .....+|..+..++.|. .+|..+
T Consensus 283 ----~~nah~~sv~~~~fl~~epVl~ta~-~DnSlk~~vfD~~dg~pR~-------LR~R~GHs~Pp~~irfy~~~g~~i 350 (910)
T KOG1539|consen 283 ----TRNAHYGSVTGATFLPGEPVLVTAG-ADNSLKVWVFDSGDGVPRL-------LRSRGGHSAPPSCIRFYGSQGHFI 350 (910)
T ss_pred ----eeccccCCcccceecCCCceEeecc-CCCceeEEEeeCCCCcchh-------eeeccCCCCCchheeeeccCcEEE
Confidence 2336778999999999988888877 5888888876654432111 11345666677777776 566667
Q ss_pred EEEecCCeEEEEEc-----------------------------------------------------------------c
Q 010390 290 TASCMDHRIYLYNV-----------------------------------------------------------------L 304 (512)
Q Consensus 290 ~~~~~dg~i~i~d~-----------------------------------------------------------------~ 304 (512)
.+++.|++.+.+++ +
T Consensus 351 lsa~~Drt~r~fs~~~e~~~~~l~~~~~~~~~kk~~~~~~~~~k~p~i~~fa~~~~RE~~W~Nv~~~h~~~~~~~tW~~~ 430 (910)
T KOG1539|consen 351 LSAKQDRTLRSFSVISESQSQELGQLHNKKRAKKVNVFSTEKLKLPPIVEFAFENAREKEWDNVITAHKGKRSAYTWNFR 430 (910)
T ss_pred EecccCcchhhhhhhHHHHhHhhcccccccccccccccchhhhcCCcceeeecccchhhhhcceeEEecCcceEEEEecc
Confidence 77777766666653 2
Q ss_pred cCCCCceEeeee---ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee---ccccCCeEEEEeCCCCCCe
Q 010390 305 QLDKGPIQHFSG---CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCPNEAGK 378 (512)
Q Consensus 305 ~~~~~~~~~~~~---~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~~~~~~ 378 (512)
+..... ..+.. .+....+++++.++.|++.+.|...|.|.+|++.++-.. ..+ ..|+++|++++...-+ +.
T Consensus 431 n~~~G~-~~L~~~~~~~~~~~~~av~vs~CGNF~~IG~S~G~Id~fNmQSGi~r-~sf~~~~ah~~~V~gla~D~~n-~~ 507 (910)
T KOG1539|consen 431 NKTSGR-HVLDPKRFKKDDINATAVCVSFCGNFVFIGYSKGTIDRFNMQSGIHR-KSFGDSPAHKGEVTGLAVDGTN-RL 507 (910)
T ss_pred Cccccc-EEecCccccccCcceEEEEEeccCceEEEeccCCeEEEEEcccCeee-cccccCccccCceeEEEecCCC-ce
Confidence 111000 00000 012245678899999999999999999999999988653 334 5899999999998888 89
Q ss_pred EEEEeCCCcEEEEeCCCCcccccccCccccceeee-----------------eccchhcccccCCCCcccccCCCCcCCC
Q 010390 379 IVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMA-----------------IPSTECRKLFMNGEPGWLAKGSDRSYNS 441 (512)
Q Consensus 379 l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~~~~~~~~~~~p 441 (512)
+++++.||.+++||+..+..+...........+.. +......++.=.-.++...++ +++|+|
T Consensus 508 ~vsa~~~Gilkfw~f~~k~l~~~l~l~~~~~~iv~hr~s~l~a~~~ddf~I~vvD~~t~kvvR~f~gh~nrit-d~~FS~ 586 (910)
T KOG1539|consen 508 LVSAGADGILKFWDFKKKVLKKSLRLGSSITGIVYHRVSDLLAIALDDFSIRVVDVVTRKVVREFWGHGNRIT-DMTFSP 586 (910)
T ss_pred EEEccCcceEEEEecCCcceeeeeccCCCcceeeeeehhhhhhhhcCceeEEEEEchhhhhhHHhhcccccee-eeEeCC
Confidence 99999999999999998885554332111111000 000011111111122334455 899999
Q ss_pred chhcccCCCCCCCCCCeecCchhhccCCCCc
Q 010390 442 DDVLNQINSSDPKNMPIIRTPEAQKKKIPSF 472 (512)
Q Consensus 442 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 472 (512)
||+.+.+.+-.. .+..|..+.++..+...+
T Consensus 587 DgrWlisasmD~-tIr~wDlpt~~lID~~~v 616 (910)
T KOG1539|consen 587 DGRWLISASMDS-TIRTWDLPTGTLIDGLLV 616 (910)
T ss_pred CCcEEEEeecCC-cEEEEeccCcceeeeEec
Confidence 999998875533 456677776665554433
No 130
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.94 E-value=7.7e-25 Score=191.62 Aligned_cols=305 Identities=17% Similarity=0.196 Sum_probs=223.1
Q ss_pred eecCCccCCcceEEEEEecCCC--cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CC
Q 010390 44 VEHHGEETPPLAVSFCKTSKNS--HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-ED 120 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~--~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~ 120 (512)
...+-|.++|++++| +|.. +++|+|..-|.|-+||+.+.++ ....+..+..|..+|.+|.|+| +.
T Consensus 180 ~v~kv~~~Rit~l~f---HPt~~~~lva~GdK~G~VG~Wn~~~~~~---------d~d~v~~f~~hs~~Vs~l~F~P~n~ 247 (498)
T KOG4328|consen 180 NVAKVTDRRITSLAF---HPTENRKLVAVGDKGGQVGLWNFGTQEK---------DKDGVYLFTPHSGPVSGLKFSPANT 247 (498)
T ss_pred ceeEecccceEEEEe---cccCcceEEEEccCCCcEEEEecCCCCC---------ccCceEEeccCCccccceEecCCCh
Confidence 345568999999999 6644 5899999999999999964332 2233667889999999999999 66
Q ss_pred CEEEEEeCCCcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 121 TNILTASGDQTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
..+++.+.||+|++-|++....- ..+..-...+..+.|+.+. ..++.+..=|.+.+||++......
T Consensus 248 s~i~ssSyDGtiR~~D~~~~i~e~v~s~~~d~~~fs~~d~~~e~-~~vl~~~~~G~f~~iD~R~~~s~~----------- 315 (498)
T KOG4328|consen 248 SQIYSSSYDGTIRLQDFEGNISEEVLSLDTDNIWFSSLDFSAES-RSVLFGDNVGNFNVIDLRTDGSEY----------- 315 (498)
T ss_pred hheeeeccCceeeeeeecchhhHHHhhcCccceeeeeccccCCC-ccEEEeecccceEEEEeecCCccc-----------
Confidence 78999999999999999887443 3333344566778888877 556666666799999999765422
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
..+..|...|.+++++|...+++++++.|++.+|||++....... +......|...|.
T Consensus 316 ---------------~~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~s-------p~lst~~HrrsV~ 373 (498)
T KOG4328|consen 316 ---------------ENLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKAS-------PFLSTLPHRRSVN 373 (498)
T ss_pred ---------------hhhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCC-------cceecccccceee
Confidence 134466779999999999999888888999999999997654432 1114677888999
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEccc--CCCCceEeee-eceec--eeEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQ--LDKGPIQHFS-GCRIE--SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~--~~~~~~~~~~-~~~~~--~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
+..|+|.+-.|++.+.|..|+|||..- ....+...+. .+... -......|.|+..+|++|-.-..|-|+|-..++
T Consensus 374 sAyFSPs~gtl~TT~~D~~IRv~dss~~sa~~~p~~~I~Hn~~t~RwlT~fKA~W~P~~~li~vg~~~r~IDv~~~~~~q 453 (498)
T KOG4328|consen 374 SAYFSPSGGTLLTTCQDNEIRVFDSSCISAKDEPLGTIPHNNRTGRWLTPFKAAWDPDYNLIVVGRYPRPIDVFDGNGGQ 453 (498)
T ss_pred eeEEcCCCCceEeeccCCceEEeecccccccCCccceeeccCcccccccchhheeCCCccEEEEeccCcceeEEcCCCCE
Confidence 999999888899999999999999741 1112222222 11111 123457899999999999999999999988776
Q ss_pred CCCceeccccCCeEE-EEeCCCCCC-eEEEEeCCCcEEEEeCCC
Q 010390 354 ADPIKLKSHDGEVTA-VNWCPNEAG-KIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 354 ~~~~~~~~h~~~v~~-v~~~~~~~~-~l~s~~~dg~i~vwd~~~ 395 (512)
............|.+ ..|+|.+ . +++.++..|.|+||.-+.
T Consensus 454 ~v~el~~P~~~tI~~vn~~HP~~-~~~~aG~~s~Gki~vft~k~ 496 (498)
T KOG4328|consen 454 MVCELHDPESSTIPSVNEFHPMR-DTLAAGGNSSGKIYVFTNKK 496 (498)
T ss_pred EeeeccCccccccccceeecccc-cceeccCCccceEEEEecCC
Confidence 432222222334544 4699988 5 444445678999886543
No 131
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.3e-23 Score=186.09 Aligned_cols=298 Identities=15% Similarity=0.281 Sum_probs=213.7
Q ss_pred EEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-CCcEEEEEEecCCCEEEEEeCCCcEEEEeC
Q 010390 59 CKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTNILTASGDQTIKIWDA 137 (512)
Q Consensus 59 ~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~ 137 (512)
+.|+|.+.-|...+..|.+..|+.+++.. .+....+..+ +.-|.|++|.++|+ +++|..+|.|.||+.
T Consensus 206 a~FHPtd~nliit~Gk~H~~Fw~~~~~~l----------~k~~~~fek~ekk~Vl~v~F~engd-viTgDS~G~i~Iw~~ 274 (626)
T KOG2106|consen 206 ATFHPTDPNLIITCGKGHLYFWTLRGGSL----------VKRQGIFEKREKKFVLCVTFLENGD-VITGDSGGNILIWSK 274 (626)
T ss_pred EEeccCCCcEEEEeCCceEEEEEccCCce----------EEEeeccccccceEEEEEEEcCCCC-EEeecCCceEEEEeC
Confidence 34488665444445578999999887643 1222333333 36899999999886 789999999999999
Q ss_pred CCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccc--ceeeecccccccccc--------
Q 010390 138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAE--SFVFSSAVVKGAHLL-------- 207 (512)
Q Consensus 138 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~--~~~~~~~~~~~~~~~-------- 207 (512)
.+.+..+....|.+.|.+++...+| .|++|+.|+.|..||-.-.........+ ..+.......+..+.
T Consensus 275 ~~~~~~k~~~aH~ggv~~L~~lr~G--tllSGgKDRki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL 352 (626)
T KOG2106|consen 275 GTNRISKQVHAHDGGVFSLCMLRDG--TLLSGGKDRKIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFIL 352 (626)
T ss_pred CCceEEeEeeecCCceEEEEEecCc--cEeecCccceEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEE
Confidence 8888777777999999999999876 5667999999999993322211111111 111111111111000
Q ss_pred ---cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 208 ---SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 208 ---~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
..........+|......++.+|+..+++++| .|+.+++|+ ..+.... .....++.|+.|+|
T Consensus 353 ~Gt~~~~f~~~v~gh~delwgla~hps~~q~~T~g-qdk~v~lW~--~~k~~wt------------~~~~d~~~~~~fhp 417 (626)
T KOG2106|consen 353 QGTLENGFTLTVQGHGDELWGLATHPSKNQLLTCG-QDKHVRLWN--DHKLEWT------------KIIEDPAECADFHP 417 (626)
T ss_pred EeeecCCceEEEEecccceeeEEcCCChhheeecc-CcceEEEcc--CCceeEE------------EEecCceeEeeccC
Confidence 01112234567888999999999999999977 899999999 3333332 22235688999999
Q ss_pred CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee-cccc
Q 010390 285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL-KSHD 363 (512)
Q Consensus 285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~-~~h~ 363 (512)
.| .++.|...|...+.|.++. .+..+. .....+..+.|+|+|.+||.|+.|+.|+||.+.......... ..|.
T Consensus 418 sg-~va~Gt~~G~w~V~d~e~~---~lv~~~--~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~~y~r~~k~~g 491 (626)
T KOG2106|consen 418 SG-VVAVGTATGRWFVLDTETQ---DLVTIH--TDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGRKYSRVGKCSG 491 (626)
T ss_pred cc-eEEEeeccceEEEEecccc---eeEEEE--ecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCcEEEEeeeecC
Confidence 99 9999999999999998652 222222 225668889999999999999999999999998665433333 3345
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLW 391 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vw 391 (512)
.+|+.+.|++|+ ++|.+-+.|-.|..|
T Consensus 492 s~ithLDwS~Ds-~~~~~~S~d~eiLyW 518 (626)
T KOG2106|consen 492 SPITHLDWSSDS-QFLVSNSGDYEILYW 518 (626)
T ss_pred ceeEEeeecCCC-ceEEeccCceEEEEE
Confidence 799999999999 899999999999999
No 132
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.94 E-value=1.1e-24 Score=196.81 Aligned_cols=288 Identities=18% Similarity=0.207 Sum_probs=217.8
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.+...++||++.|.+|+. .|.|.+||+|+.||+|+||.+.++.+ +.++. -.+.|.|++|+|.+
T Consensus 391 ~~~lvyrGHtg~Vr~iSv---dp~G~wlasGsdDGtvriWEi~TgRc-------------vr~~~-~d~~I~~vaw~P~~ 453 (733)
T KOG0650|consen 391 RCALVYRGHTGLVRSISV---DPSGEWLASGSDDGTVRIWEIATGRC-------------VRTVQ-FDSEIRSVAWNPLS 453 (733)
T ss_pred eeeeeEeccCCeEEEEEe---cCCcceeeecCCCCcEEEEEeecceE-------------EEEEe-ecceeEEEEecCCC
Confidence 345678899999999999 99999999999999999999998854 44433 34689999999965
Q ss_pred C--EEEEEeCCCcEEEEeCCCCe-------------------------------------eeecccCcCCCEEEEEeeCC
Q 010390 121 T--NILTASGDQTIKIWDAEKKK-------------------------------------CTGALMGHTGSIKSLCSHPT 161 (512)
Q Consensus 121 ~--~l~s~~~dg~i~iwd~~~~~-------------------------------------~~~~~~~h~~~v~~l~~~~~ 161 (512)
. .||++-. ..+.|-+..-|. -++....|...|..+.|+..
T Consensus 454 ~~~vLAvA~~-~~~~ivnp~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrk 532 (733)
T KOG0650|consen 454 DLCVLAVAVG-ECVLIVNPIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRK 532 (733)
T ss_pred CceeEEEEec-CceEEeCccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecC
Confidence 4 3444433 334444432110 01222347789999999999
Q ss_pred CCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390 162 NSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA 238 (512)
Q Consensus 162 ~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 238 (512)
| .+|++...+ ..|.|.++....... .+....+.+.++.|+|...+++++
T Consensus 533 G-DYlatV~~~~~~~~VliHQLSK~~sQ~---------------------------PF~kskG~vq~v~FHPs~p~lfVa 584 (733)
T KOG0650|consen 533 G-DYLATVMPDSGNKSVLIHQLSKRKSQS---------------------------PFRKSKGLVQRVKFHPSKPYLFVA 584 (733)
T ss_pred C-ceEEEeccCCCcceEEEEecccccccC---------------------------chhhcCCceeEEEecCCCceEEEE
Confidence 8 888888764 468888887543322 344456789999999999999986
Q ss_pred eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390 239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR 318 (512)
Q Consensus 239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 318 (512)
. ...|++||+.....+. .+......|..|+.+|.|..|+.++.|+.+..||+.- ..++.+.+..|.
T Consensus 585 T--q~~vRiYdL~kqelvK-----------kL~tg~kwiS~msihp~GDnli~gs~d~k~~WfDldl-sskPyk~lr~H~ 650 (733)
T KOG0650|consen 585 T--QRSVRIYDLSKQELVK-----------KLLTGSKWISSMSIHPNGDNLILGSYDKKMCWFDLDL-SSKPYKTLRLHE 650 (733)
T ss_pred e--ccceEEEehhHHHHHH-----------HHhcCCeeeeeeeecCCCCeEEEecCCCeeEEEEccc-CcchhHHhhhhh
Confidence 5 7889999999865544 2444456799999999999999999999999999843 344555555553
Q ss_pred eceeEEEEEECCCCCEEEEecCCCCEEEEecCCC--------CCCCceeccccCC----eEEEEeCCCCCCeEEEEeCCC
Q 010390 319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKP--------QADPIKLKSHDGE----VTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~--------~~~~~~~~~h~~~----v~~v~~~~~~~~~l~s~~~dg 386 (512)
..+..++|++.-.++++|+.||++.||.-.-. -.++..+.+|... |..+.|+|.. -+|++++.||
T Consensus 651 --~avr~Va~H~ryPLfas~sdDgtv~Vfhg~VY~Dl~qnpliVPlK~L~gH~~~~~~gVLd~~wHP~q-pWLfsAGAd~ 727 (733)
T KOG0650|consen 651 --KAVRSVAFHKRYPLFASGSDDGTVIVFHGMVYNDLLQNPLIVPLKRLRGHEKTNDLGVLDTIWHPRQ-PWLFSAGADG 727 (733)
T ss_pred --hhhhhhhhccccceeeeecCCCcEEEEeeeeehhhhcCCceEeeeeccCceeecccceEeecccCCC-ceEEecCCCc
Confidence 44677999999999999999999999853211 1234567888654 9999999998 6999999999
Q ss_pred cEEEE
Q 010390 387 TVRLW 391 (512)
Q Consensus 387 ~i~vw 391 (512)
+|++|
T Consensus 728 tirlf 732 (733)
T KOG0650|consen 728 TIRLF 732 (733)
T ss_pred eEEee
Confidence 99998
No 133
>KOG2106 consensus Uncharacterized conserved protein, contains HELP and WD40 domains [Function unknown]
Probab=99.94 E-value=1.1e-23 Score=186.58 Aligned_cols=277 Identities=20% Similarity=0.372 Sum_probs=209.0
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..|.||+| .+||+ ++||.++|.|.||+..+.+. .++...|.+.|.+++...+|. |++|+.|.
T Consensus 247 k~Vl~v~F---~engd-viTgDS~G~i~Iw~~~~~~~-------------~k~~~aH~ggv~~L~~lr~Gt-llSGgKDR 308 (626)
T KOG2106|consen 247 KFVLCVTF---LENGD-VITGDSGGNILIWSKGTNRI-------------SKQVHAHDGGVFSLCMLRDGT-LLSGGKDR 308 (626)
T ss_pred eEEEEEEE---cCCCC-EEeecCCceEEEEeCCCceE-------------EeEeeecCCceEEEEEecCcc-EeecCccc
Confidence 55777777 89887 77899999999999865532 344459999999999998886 55599999
Q ss_pred cEEEEeCCCCe----------------------------------------eeecccCcCCCEEEEEeeCCCCCeEEEEe
Q 010390 131 TIKIWDAEKKK----------------------------------------CTGALMGHTGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 131 ~i~iwd~~~~~----------------------------------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 170 (512)
.|..||-.-.+ ......+|.+..+.++.+|+. +++++++
T Consensus 309 ki~~Wd~~y~k~r~~elPe~~G~iRtv~e~~~di~vGTtrN~iL~Gt~~~~f~~~v~gh~delwgla~hps~-~q~~T~g 387 (626)
T KOG2106|consen 309 KIILWDDNYRKLRETELPEQFGPIRTVAEGKGDILVGTTRNFILQGTLENGFTLTVQGHGDELWGLATHPSK-NQLLTCG 387 (626)
T ss_pred eEEeccccccccccccCchhcCCeeEEecCCCcEEEeeccceEEEeeecCCceEEEEecccceeeEEcCCCh-hheeecc
Confidence 99999832110 001224588899999999987 8999999
Q ss_pred CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT 250 (512)
Q Consensus 171 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~ 250 (512)
.|+.+++|+ ..+.. ..+....+..|+.|+|.| .++ .|...|...+.|.
T Consensus 388 qdk~v~lW~--~~k~~----------------------------wt~~~~d~~~~~~fhpsg-~va-~Gt~~G~w~V~d~ 435 (626)
T KOG2106|consen 388 QDKHVRLWN--DHKLE----------------------------WTKIIEDPAECADFHPSG-VVA-VGTATGRWFVLDT 435 (626)
T ss_pred CcceEEEcc--CCcee----------------------------EEEEecCceeEeeccCcc-eEE-EeeccceEEEEec
Confidence 999999999 22111 112335588999999999 454 4878999999999
Q ss_pred cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390 251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP 330 (512)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 330 (512)
++...+. ......++++++|+|+|.+||+|+.|+.|++|-+..... .......... .+++.+.||+
T Consensus 436 e~~~lv~------------~~~d~~~ls~v~ysp~G~~lAvgs~d~~iyiy~Vs~~g~-~y~r~~k~~g-s~ithLDwS~ 501 (626)
T KOG2106|consen 436 ETQDLVT------------IHTDNEQLSVVRYSPDGAFLAVGSHDNHIYIYRVSANGR-KYSRVGKCSG-SPITHLDWSS 501 (626)
T ss_pred ccceeEE------------EEecCCceEEEEEcCCCCEEEEecCCCeEEEEEECCCCc-EEEEeeeecC-ceeEEeeecC
Confidence 9855443 222267899999999999999999999999999866433 2333333333 7889999999
Q ss_pred CCCEEEEecCCCCEEEEecCC-----------------------------------------------------------
Q 010390 331 NASHILSGSSDGNAYVWQVNK----------------------------------------------------------- 351 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~----------------------------------------------------------- 351 (512)
|+++|.+-+.|-.|..|.-..
T Consensus 502 Ds~~~~~~S~d~eiLyW~~~~~~~~ts~kDvkW~t~~c~lGF~v~g~s~~t~i~a~~rs~~~~~lA~gdd~g~v~lf~yP 581 (626)
T KOG2106|consen 502 DSQFLVSNSGDYEILYWKPSECKQITSVKDVKWATYTCTLGFEVFGGSDGTDINAVARSHCEKLLASGDDFGKVHLFSYP 581 (626)
T ss_pred CCceEEeccCceEEEEEccccCcccceecceeeeeeEEEEEEEEecccCCchHHHhhhhhhhhhhhccccCceEEEEccc
Confidence 999888888888888883221
Q ss_pred ---CCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 352 ---PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 352 ---~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
.+.....+.+|.+.|++++|.-+. ..|++.+.|..|..|++
T Consensus 582 c~s~rA~~he~~ghs~~vt~V~Fl~~d-~~li~tg~D~Si~qW~l 625 (626)
T KOG2106|consen 582 CSSPRAPSHEYGGHSSHVTNVAFLCKD-SHLISTGKDTSIMQWRL 625 (626)
T ss_pred cCCCcccceeeccccceeEEEEEeeCC-ceEEecCCCceEEEEEe
Confidence 111122456788899999999887 78888889999999986
No 134
>KOG0639 consensus Transducin-like enhancer of split protein (contains WD40 repeats) [Chromatin structure and dynamics]
Probab=99.93 E-value=4.2e-25 Score=195.34 Aligned_cols=274 Identities=16% Similarity=0.254 Sum_probs=215.4
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
..|.+-|.++..+...+++.||+. |.|+|||+... .++..+. .....|.+....|++ +.|++|+.-.+|.|||
T Consensus 416 L~HGEvVcAvtIS~~trhVyTgGk-gcVKVWdis~pg~k~PvsqLdcl~rdnyiRSckL~pdg-rtLivGGeastlsiWD 493 (705)
T KOG0639|consen 416 LAHGEVVCAVTISNPTRHVYTGGK-GCVKVWDISQPGNKSPVSQLDCLNRDNYIRSCKLLPDG-RTLIVGGEASTLSIWD 493 (705)
T ss_pred hccCcEEEEEEecCCcceeEecCC-CeEEEeeccCCCCCCccccccccCcccceeeeEecCCC-ceEEeccccceeeeee
Confidence 468899999999999999999975 66999999654 2333332 234678899999998 8899999999999999
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
+......... .+........+++.+||.+..++++ .||.|.|||+.+...+.
T Consensus 494 LAapTprika-------------------------eltssapaCyALa~spDakvcFscc-sdGnI~vwDLhnq~~Vr-- 545 (705)
T KOG0639|consen 494 LAAPTPRIKA-------------------------ELTSSAPACYALAISPDAKVCFSCC-SDGNIAVWDLHNQTLVR-- 545 (705)
T ss_pred ccCCCcchhh-------------------------hcCCcchhhhhhhcCCccceeeeec-cCCcEEEEEcccceeee--
Confidence 9865432211 1112223567788999999888866 69999999999887766
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
.+.+|..++.|+.+++||..|.+|+-|++|+.||++.... +..|...+.|.++.++|++.+|+.|-
T Consensus 546 ---------qfqGhtDGascIdis~dGtklWTGGlDntvRcWDlregrq-----lqqhdF~SQIfSLg~cP~~dWlavGM 611 (705)
T KOG0639|consen 546 ---------QFQGHTDGASCIDISKDGTKLWTGGLDNTVRCWDLREGRQ-----LQQHDFSSQIFSLGYCPTGDWLAVGM 611 (705)
T ss_pred ---------cccCCCCCceeEEecCCCceeecCCCccceeehhhhhhhh-----hhhhhhhhhheecccCCCccceeeec
Confidence 6899999999999999999999999999999999977543 33344456688899999999999999
Q ss_pred CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchh
Q 010390 340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTEC 419 (512)
Q Consensus 340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 419 (512)
.++.+.|......+. ..+..|+..|.++.|.+.| +++++.+.|+.+..|...-|..+.. ......|.++..+..
T Consensus 612 ens~vevlh~skp~k--yqlhlheScVLSlKFa~cG-kwfvStGkDnlLnawrtPyGasiFq---skE~SsVlsCDIS~d 685 (705)
T KOG0639|consen 612 ENSNVEVLHTSKPEK--YQLHLHESCVLSLKFAYCG-KWFVSTGKDNLLNAWRTPYGASIFQ---SKESSSVLSCDISFD 685 (705)
T ss_pred ccCcEEEEecCCccc--eeecccccEEEEEEecccC-ceeeecCchhhhhhccCccccceee---ccccCcceeeeeccC
Confidence 999999888776554 5788899999999999999 9999999999999999988875543 222334555555555
Q ss_pred cccccCCCC
Q 010390 420 RKLFMNGEP 428 (512)
Q Consensus 420 ~~~~~~~~~ 428 (512)
.+++++|.+
T Consensus 686 dkyIVTGSG 694 (705)
T KOG0639|consen 686 DKYIVTGSG 694 (705)
T ss_pred ceEEEecCC
Confidence 555555544
No 135
>KOG0269 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.93 E-value=2.4e-25 Score=206.83 Aligned_cols=250 Identities=17% Similarity=0.280 Sum_probs=195.2
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCc
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQT 131 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~ 131 (512)
+..|.|. .-+.++|||++..|.|.+||+... ...+.+..|..|+..|+++.|++ ...+|++|+.||+
T Consensus 90 ~~DVkW~--~~~~NlIAT~s~nG~i~vWdlnk~----------~rnk~l~~f~EH~Rs~~~ldfh~tep~iliSGSQDg~ 157 (839)
T KOG0269|consen 90 AADVKWG--QLYSNLIATCSTNGVISVWDLNKS----------IRNKLLTVFNEHERSANKLDFHSTEPNILISGSQDGT 157 (839)
T ss_pred hhhcccc--cchhhhheeecCCCcEEEEecCcc----------ccchhhhHhhhhccceeeeeeccCCccEEEecCCCce
Confidence 3455554 235689999999999999999763 12345778899999999999999 4567789999999
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
|++||++..+...++.+....|..+.|+|..++.|+++...|.|++||++... +
T Consensus 158 vK~~DlR~~~S~~t~~~nSESiRDV~fsp~~~~~F~s~~dsG~lqlWDlRqp~--------------------------r 211 (839)
T KOG0269|consen 158 VKCWDLRSKKSKSTFRSNSESIRDVKFSPGYGNKFASIHDSGYLQLWDLRQPD--------------------------R 211 (839)
T ss_pred EEEEeeecccccccccccchhhhceeeccCCCceEEEecCCceEEEeeccCch--------------------------h
Confidence 99999999999999999899999999999888999999999999999999643 3
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE-EE
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF-LT 290 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~-l~ 290 (512)
....+.+|.++|.|+.|+|++.+|++ |+.|+.|+|||..+.+.... .......++.++.|-|...+ |+
T Consensus 212 ~~~k~~AH~GpV~c~nwhPnr~~lAT-GGRDK~vkiWd~t~~~~~~~----------~tInTiapv~rVkWRP~~~~hLA 280 (839)
T KOG0269|consen 212 CEKKLTAHNGPVLCLNWHPNREWLAT-GGRDKMVKIWDMTDSRAKPK----------HTINTIAPVGRVKWRPARSYHLA 280 (839)
T ss_pred HHHHhhcccCceEEEeecCCCceeee-cCCCccEEEEeccCCCccce----------eEEeecceeeeeeeccCccchhh
Confidence 34467799999999999998888887 55999999999987554322 12233467999999997764 55
Q ss_pred EEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECC-CCCEEEEecCCCCEEEEecCCCCC
Q 010390 291 ASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 291 ~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
+++ .|-.|+|||++.. -.+...+..|. ..++.++|.. |...+.+++.||+|..-.+++...
T Consensus 281 tcsmv~dtsV~VWDvrRP-YIP~~t~~eH~--~~vt~i~W~~~d~~~l~s~sKD~tv~qh~~knat~ 344 (839)
T KOG0269|consen 281 TCSMVVDTSVHVWDVRRP-YIPYATFLEHT--DSVTGIAWDSGDRINLWSCSKDGTVLQHLFKNATT 344 (839)
T ss_pred hhhccccceEEEEeeccc-cccceeeeccC--ccccceeccCCCceeeEeecCccHHHHhhhhcccC
Confidence 554 5678999999753 33455555553 4466688865 455678899999887776665544
No 136
>KOG1274 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=9.7e-24 Score=200.05 Aligned_cols=263 Identities=14% Similarity=0.218 Sum_probs=206.3
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
.+|...-+.|+|.|+|.+|++++.||.|++|+.... +...++..+...|.+++... +.|++|+.+++|.+|.+.++
T Consensus 10 yaht~G~t~i~~d~~gefi~tcgsdg~ir~~~~~sd~e~P~ti~~~g~~v~~ia~~s---~~f~~~s~~~tv~~y~fps~ 86 (933)
T KOG1274|consen 10 YAHTGGLTLICYDPDGEFICTCGSDGDIRKWKTNSDEEEPETIDISGELVSSIACYS---NHFLTGSEQNTVLRYKFPSG 86 (933)
T ss_pred hhccCceEEEEEcCCCCEEEEecCCCceEEeecCCcccCCchhhccCceeEEEeecc---cceEEeeccceEEEeeCCCC
Confidence 478899999999999999999999999999997766 44555554777888887653 68999999999999999876
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
+.-.. +....-++++++++-+|+.+++ |+.|-.|++.+........
T Consensus 87 ~~~~i---------------------------L~Rftlp~r~~~v~g~g~~iaa-gsdD~~vK~~~~~D~s~~~------ 132 (933)
T KOG1274|consen 87 EEDTI---------------------------LARFTLPIRDLAVSGSGKMIAA-GSDDTAVKLLNLDDSSQEK------ 132 (933)
T ss_pred Cccce---------------------------eeeeeccceEEEEecCCcEEEe-ecCceeEEEEeccccchhe------
Confidence 54321 1123448999999999999987 5589999999998877665
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee------ceeceeEEEEEECCCCCEEEE
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG------CRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~------~~~~~~~~~~~~s~~~~~l~~ 337 (512)
...+|..+|.++.++|++.+|++.+.||.|++||+.+.... ..+.+ ......+..++|+|++..+++
T Consensus 133 -----~lrgh~apVl~l~~~p~~~fLAvss~dG~v~iw~~~~~~~~--~tl~~v~k~n~~~~s~i~~~~aW~Pk~g~la~ 205 (933)
T KOG1274|consen 133 -----VLRGHDAPVLQLSYDPKGNFLAVSSCDGKVQIWDLQDGILS--KTLTGVDKDNEFILSRICTRLAWHPKGGTLAV 205 (933)
T ss_pred -----eecccCCceeeeeEcCCCCEEEEEecCceEEEEEcccchhh--hhcccCCccccccccceeeeeeecCCCCeEEe
Confidence 57899999999999999999999999999999999764322 22111 112455778999999888888
Q ss_pred ecCCCCEEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeecc
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPS 416 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 416 (512)
...|+.|.+|+..+......... .+...+..++|+|.| .|||+++.||.|.|||.++-+. ......|++..+
T Consensus 206 ~~~d~~Vkvy~r~~we~~f~Lr~~~~ss~~~~~~wsPnG-~YiAAs~~~g~I~vWnv~t~~~------~~~~~~Vc~~aw 278 (933)
T KOG1274|consen 206 PPVDNTVKVYSRKGWELQFKLRDKLSSSKFSDLQWSPNG-KYIAASTLDGQILVWNVDTHER------HEFKRAVCCEAW 278 (933)
T ss_pred eccCCeEEEEccCCceeheeecccccccceEEEEEcCCC-cEEeeeccCCcEEEEecccchh------ccccceeEEEec
Confidence 88899999999988766432222 334459999999999 9999999999999999997221 333445555555
Q ss_pred ch
Q 010390 417 TE 418 (512)
Q Consensus 417 ~~ 418 (512)
.+
T Consensus 279 ~p 280 (933)
T KOG1274|consen 279 KP 280 (933)
T ss_pred CC
Confidence 54
No 137
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.93 E-value=1e-23 Score=176.62 Aligned_cols=299 Identities=17% Similarity=0.209 Sum_probs=212.8
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccc-cccccccccceeccccCCCcEEEEEEe-------cCCCEE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFA-CHRENAEKARISDWVAHQNAIFDLCWI-------KEDTNI 123 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~-~~~~~~~~~~~~~~~~h~~~V~~l~~s-------~~~~~l 123 (512)
|-+-+.=|.|||||..|.+-+.|..+.+|++........ ....+.+.+..... .....|+..+|- |+..++
T Consensus 48 p~nf~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~-~eg~tvydy~wYs~M~s~qP~t~l~ 126 (406)
T KOG2919|consen 48 PLNFLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRY-QEGETVYDYCWYSRMKSDQPSTNLF 126 (406)
T ss_pred chhhhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEe-ccCCEEEEEEeeeccccCCCcccee
Confidence 334444456699999999999999999999754322111 00000111111111 224678888887 567789
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccC--cCC---CEEEEEeeCCCCCeEEEEeCCCcEEEEeCC-CCCCCCCccccceeee
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMG--HTG---SIKSLCSHPTNSDILVSGSRDGSFAIWDLR-CKSSPKSNCAESFVFS 197 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~--h~~---~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~-~~~~~~~~~~~~~~~~ 197 (512)
++.+.+.-|++||.-+|+....+.+ |.. ...+++|+|+| ..|++|. ...|+++|+. .+..-.....
T Consensus 127 a~ssr~~PIh~wdaftG~lraSy~~ydh~de~taAhsL~Fs~DG-eqlfaGy-krcirvFdt~RpGr~c~vy~t------ 198 (406)
T KOG2919|consen 127 AVSSRDQPIHLWDAFTGKLRASYRAYDHQDEYTAAHSLQFSPDG-EQLFAGY-KRCIRVFDTSRPGRDCPVYTT------ 198 (406)
T ss_pred eeccccCceeeeeccccccccchhhhhhHHhhhhheeEEecCCC-CeEeecc-cceEEEeeccCCCCCCcchhh------
Confidence 9999999999999999998877754 333 45689999999 6777765 5799999994 3322111000
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
...-..+..+.+.+++|+|.....+++|+....+-||.-....... .+.+|.++|
T Consensus 199 --------------~~~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~~~pl~-----------llggh~gGv 253 (406)
T KOG2919|consen 199 --------------VTKGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDGRRPLQ-----------LLGGHGGGV 253 (406)
T ss_pred --------------hhcccccccceeeeeeccCCCCcceeeecccceeeeEecCCCCcee-----------eecccCCCe
Confidence 0001223456789999999888666668788888888777666554 467899999
Q ss_pred eEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeecee-ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC
Q 010390 278 SSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~ 355 (512)
+.+.|.++|+.|++|. .|-.|..||++.. ..++..+..+.. ...-+-....|++++|++|+.||.|++||+.+....
T Consensus 254 ThL~~~edGn~lfsGaRk~dkIl~WDiR~~-~~pv~~L~rhv~~TNQRI~FDld~~~~~LasG~tdG~V~vwdlk~~gn~ 332 (406)
T KOG2919|consen 254 THLQWCEDGNKLFSGARKDDKILCWDIRYS-RDPVYALERHVGDTNQRILFDLDPKGEILASGDTDGSVRVWDLKDLGNE 332 (406)
T ss_pred eeEEeccCcCeecccccCCCeEEEEeehhc-cchhhhhhhhccCccceEEEecCCCCceeeccCCCccEEEEecCCCCCc
Confidence 9999999999999998 4679999999874 344555555443 333334667799999999999999999999985555
Q ss_pred CceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390 356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 386 (512)
...+..|...|+.++++|-- .++++++...
T Consensus 333 ~sv~~~~sd~vNgvslnP~m-pilatssGqr 362 (406)
T KOG2919|consen 333 VSVTGNYSDTVNGVSLNPIM-PILATSSGQR 362 (406)
T ss_pred ccccccccccccceecCccc-ceeeeccCce
Confidence 66788899999999999986 5777776543
No 138
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=3.2e-24 Score=184.14 Aligned_cols=336 Identities=14% Similarity=0.153 Sum_probs=237.8
Q ss_pred ccceeeecCcccccccccCCCCCCceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccc
Q 010390 12 NVRSRELNGFKARKRPYFGDVVTDFTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFAC 91 (512)
Q Consensus 12 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~ 91 (512)
.+..++++|...-...|... +..-......+.+|.+-|++|.| |.++++||+|+.|-.++||+++......
T Consensus 22 FL~QR~i~~~~~~~k~F~~~----~~~R~~~qKD~~~H~GCiNAlqF---S~N~~~L~SGGDD~~~~~W~~de~~~~k-- 92 (609)
T KOG4227|consen 22 FLCQREIGSVKSVVKTFRPD----FQHRPFCQKDVREHTGCINALQF---SHNDRFLASGGDDMHGRVWNVDELMVRK-- 92 (609)
T ss_pred eeeecccCCChhhhhhhchh----hhhcchhhhhhhhhccccceeee---ccCCeEEeecCCcceeeeechHHHHhhc--
Confidence 45666677655422222111 22223445678899999999999 9999999999999999999986432100
Q ss_pred ccccccccceecc-ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCCCCCeEEE
Q 010390 92 HRENAEKARISDW-VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPTNSDILVS 168 (512)
Q Consensus 92 ~~~~~~~~~~~~~-~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s 168 (512)
..+++... ..|...|.|++|.-....|.+|+.+++|..-|+++.+.+..+.. ..+.|+.+..+|.+ +.|++
T Consensus 93 -----~~KPI~~~~~~H~SNIF~L~F~~~N~~~~SG~~~~~VI~HDiEt~qsi~V~~~~~~~~~VY~m~~~P~D-N~~~~ 166 (609)
T KOG4227|consen 93 -----TPKPIGVMEHPHRSNIFSLEFDLENRFLYSGERWGTVIKHDIETKQSIYVANENNNRGDVYHMDQHPTD-NTLIV 166 (609)
T ss_pred -----CCCCceeccCccccceEEEEEccCCeeEecCCCcceeEeeecccceeeeeecccCcccceeecccCCCC-ceEEE
Confidence 01222222 34568999999999899999999999999999999988877652 23589999999997 99999
Q ss_pred EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390 169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW 248 (512)
Q Consensus 169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw 248 (512)
.+.++.|.+||.+......... ...........+.|+|....|+++.+..+.+.+|
T Consensus 167 ~t~~~~V~~~D~Rd~~~~~~~~------------------------~~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~ 222 (609)
T KOG4227|consen 167 VTRAKLVSFIDNRDRQNPISLV------------------------LPANSGKNFYTAEFHPETPALILVNSETGGPNVF 222 (609)
T ss_pred EecCceEEEEeccCCCCCCcee------------------------eecCCCccceeeeecCCCceeEEeccccCCCCce
Confidence 9999999999998665222110 1112234678899999998888878788999999
Q ss_pred eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee----eceeceeEE
Q 010390 249 DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS----GCRIESFYV 324 (512)
Q Consensus 249 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~----~~~~~~~~~ 324 (512)
|++............. .+......-..+.|+|+|..|++--....-.+||+-.. ..++..+. +.-....+.
T Consensus 223 D~R~~~~~~~~~~~~~----~L~~~~~~~M~~~~~~~G~Q~msiRR~~~P~~~D~~S~-R~~V~k~D~N~~GY~N~~T~K 297 (609)
T KOG4227|consen 223 DRRMQARPVYQRSMFK----GLPQENTEWMGSLWSPSGNQFMSIRRGKCPLYFDFISQ-RCFVLKSDHNPNGYCNIKTIK 297 (609)
T ss_pred eeccccchHHhhhccc----cCcccchhhhheeeCCCCCeehhhhccCCCEEeeeecc-cceeEeccCCCCcceeeeeee
Confidence 9998765443322211 12222233467889999999988877767777887542 12222222 111223455
Q ss_pred EEEECCCCCEEEEecCCCCEEEEecCCCC----------------------CCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390 325 KSEICPNASHILSGSSDGNAYVWQVNKPQ----------------------ADPIKLKSHDGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 325 ~~~~s~~~~~l~~g~~dg~i~iw~~~~~~----------------------~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 382 (512)
+++|-.|.. +++|+.+-.|++|.+.... .....+.+|...++.|.|+|.. ++|++.
T Consensus 298 S~~F~~D~~-v~tGSD~~~i~~WklP~~~ds~G~~~IG~~~~~~~~~~~i~~~~~VLrGHRSv~NQVRF~~H~-~~l~SS 375 (609)
T KOG4227|consen 298 SMTFIDDYT-VATGSDHWGIHIWKLPRANDSYGFTQIGHDEEEMPSEIFIEKELTVLRGHRSVPNQVRFSQHN-NLLVSS 375 (609)
T ss_pred eeeeeccee-eeccCcccceEEEecCCCccccCccccCcchhhCchhheecceeEEEecccccccceeecCCc-ceEecc
Confidence 677765544 9999999999999875311 1124678999999999999998 899999
Q ss_pred eCCCcEEEEeC
Q 010390 383 SDDYTVRLWSL 393 (512)
Q Consensus 383 ~~dg~i~vwd~ 393 (512)
+..+.+++|.-
T Consensus 376 GVE~~~KlWS~ 386 (609)
T KOG4227|consen 376 GVENSFKLWSD 386 (609)
T ss_pred chhhheecccc
Confidence 99999999964
No 139
>KOG4283 consensus Transcription-coupled repair protein CSA, contains WD40 domain [Transcription; Replication, recombination and repair]
Probab=99.93 E-value=9.5e-24 Score=174.61 Aligned_cols=258 Identities=16% Similarity=0.182 Sum_probs=189.7
Q ss_pred ccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCe------------ee---ecccCcCCCEEEEEeeCCCCCeEEE
Q 010390 105 VAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKK------------CT---GALMGHTGSIKSLCSHPTNSDILVS 168 (512)
Q Consensus 105 ~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~------------~~---~~~~~h~~~v~~l~~~~~~~~~l~s 168 (512)
..|.+.|+++...+ .|+++++|+.||.|.+||+++.. ++ ..-.+|.-.|.++.|.|.+.-+|.+
T Consensus 40 r~HgGsvNsL~id~tegrymlSGgadgsi~v~Dl~n~t~~e~s~li~k~~c~v~~~h~~~Hky~iss~~WyP~DtGmFts 119 (397)
T KOG4283|consen 40 RPHGGSVNSLQIDLTEGRYMLSGGADGSIAVFDLQNATDYEASGLIAKHKCIVAKQHENGHKYAISSAIWYPIDTGMFTS 119 (397)
T ss_pred ccCCCccceeeeccccceEEeecCCCccEEEEEeccccchhhccceeheeeeccccCCccceeeeeeeEEeeecCceeec
Confidence 46889999999988 78999999999999999997642 11 1114588899999999988789999
Q ss_pred EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEE
Q 010390 169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVK 246 (512)
Q Consensus 169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~ 246 (512)
++.|.++++||.++.+....+ ..++.|.+-+++|- ...|+++|..+-.|+
T Consensus 120 sSFDhtlKVWDtnTlQ~a~~F----------------------------~me~~VYshamSp~a~sHcLiA~gtr~~~Vr 171 (397)
T KOG4283|consen 120 SSFDHTLKVWDTNTLQEAVDF----------------------------KMEGKVYSHAMSPMAMSHCLIAAGTRDVQVR 171 (397)
T ss_pred ccccceEEEeecccceeeEEe----------------------------ecCceeehhhcChhhhcceEEEEecCCCcEE
Confidence 999999999999987654433 23456777788773 356778898999999
Q ss_pred EEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeee----------
Q 010390 247 FWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFS---------- 315 (512)
Q Consensus 247 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~---------- 315 (512)
+.|+.++.... .+.+|...|.++.|+|... .|++|+.||.|++||++... ..+..+.
T Consensus 172 LCDi~SGs~sH-----------~LsGHr~~vlaV~Wsp~~e~vLatgsaDg~irlWDiRras-gcf~~lD~hn~k~~p~~ 239 (397)
T KOG4283|consen 172 LCDIASGSFSH-----------TLSGHRDGVLAVEWSPSSEWVLATGSADGAIRLWDIRRAS-GCFRVLDQHNTKRPPIL 239 (397)
T ss_pred EEeccCCccee-----------eeccccCceEEEEeccCceeEEEecCCCceEEEEEeeccc-ceeEEeecccCccCccc
Confidence 99999998766 5899999999999999776 57789999999999997642 2222222
Q ss_pred --eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec--cccC----CeEEEEeCCCCCCeEEEEeCCCc
Q 010390 316 --GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK--SHDG----EVTAVNWCPNEAGKIVTSSDDYT 387 (512)
Q Consensus 316 --~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~--~h~~----~v~~v~~~~~~~~~l~s~~~dg~ 387 (512)
...+.+.+..++|+.++.++++.+.|..+++|+..+++.....+. .|.. .+. +. +-+. ..++---.|+.
T Consensus 240 ~~n~ah~gkvngla~tSd~~~l~~~gtd~r~r~wn~~~G~ntl~~~g~~~~n~~~~~~~~-~~-~~~s-~vfv~~p~~~~ 316 (397)
T KOG4283|consen 240 KTNTAHYGKVNGLAWTSDARYLASCGTDDRIRVWNMESGRNTLREFGPIIHNQTTSFAVH-IQ-SMDS-DVFVLFPNDGS 316 (397)
T ss_pred cccccccceeeeeeecccchhhhhccCccceEEeecccCcccccccccccccccccceEE-Ee-eccc-ceEEEEecCCe
Confidence 222345678899999999999999999999999988765332221 1211 111 22 2222 33444444566
Q ss_pred EEEEeCCCCcccccccCc
Q 010390 388 VRLWSLENSRCSSMRSPS 405 (512)
Q Consensus 388 i~vwd~~~~~~~~~~~~~ 405 (512)
+.++++-.++.++.+...
T Consensus 317 lall~~~sgs~ir~l~~h 334 (397)
T KOG4283|consen 317 LALLNLLEGSFVRRLSTH 334 (397)
T ss_pred EEEEEccCceEEEeeecc
Confidence 777777777666654433
No 140
>KOG0301 consensus Phospholipase A2-activating protein (contains WD40 repeats) [Lipid transport and metabolism]
Probab=99.93 E-value=3.3e-24 Score=196.97 Aligned_cols=277 Identities=18% Similarity=0.326 Sum_probs=219.0
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee--ecccCcCCCEEE-EEeeCCCCCeEEEEeCCCcE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT--GALMGHTGSIKS-LCSHPTNSDILVSGSRDGSF 175 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i 175 (512)
+..+.+.+|+..|..++.. ++..+++++.||++++|+-..++.+ ..+.+|.+.|.. +++.+.+...+++|+.|.++
T Consensus 5 ~ls~~l~gH~~DVr~v~~~-~~~~i~s~sRd~t~~vw~~~~~~~l~~~~~~~~~g~i~~~i~y~e~~~~~l~~g~~D~~i 83 (745)
T KOG0301|consen 5 KLSHELEGHKSDVRAVAVT-DGVCIISGSRDGTVKVWAKKGKQYLETHAFEGPKGFIANSICYAESDKGRLVVGGMDTTI 83 (745)
T ss_pred eeEEEeccCccchheeEec-CCeEEeecCCCCceeeeeccCcccccceecccCcceeeccceeccccCcceEeecccceE
Confidence 3466788999999999976 4558999999999999997666543 456778888877 88887444679999999999
Q ss_pred EEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390 176 AIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA 255 (512)
Q Consensus 176 ~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~ 255 (512)
.+|.+.+..... .+.+|...|.++....++. ++ +|+.|.++++|.......
T Consensus 84 ~v~~~~~~~P~~---------------------------~LkgH~snVC~ls~~~~~~-~i-SgSWD~TakvW~~~~l~~ 134 (745)
T KOG0301|consen 84 IVFKLSQAEPLY---------------------------TLKGHKSNVCSLSIGEDGT-LI-SGSWDSTAKVWRIGELVY 134 (745)
T ss_pred EEEecCCCCchh---------------------------hhhccccceeeeecCCcCc-eE-ecccccceEEecchhhhc
Confidence 999988665443 6778999999999887777 44 588999999998765443
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI 335 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 335 (512)
...+|...|.++..-|.+ .+++|+.|.+|++|.- ...+..+.+| ...+..+++-+++ .+
T Consensus 135 -------------~l~gH~asVWAv~~l~e~-~~vTgsaDKtIklWk~----~~~l~tf~gH--tD~VRgL~vl~~~-~f 193 (745)
T KOG0301|consen 135 -------------SLQGHTASVWAVASLPEN-TYVTGSADKTIKLWKG----GTLLKTFSGH--TDCVRGLAVLDDS-HF 193 (745)
T ss_pred -------------ccCCcchheeeeeecCCC-cEEeccCcceeeeccC----Cchhhhhccc--hhheeeeEEecCC-Ce
Confidence 478899999999999988 7899999999999984 4566777776 4567778887664 46
Q ss_pred EEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeec
Q 010390 336 LSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIP 415 (512)
Q Consensus 336 ~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
+++++||.|++|++. +.. +..+.+|+.-|+++....++ ..++++|+|++++||+.. +|.+.... +...+|+..
T Consensus 194 lScsNDg~Ir~w~~~-ge~-l~~~~ghtn~vYsis~~~~~-~~Ivs~gEDrtlriW~~~--e~~q~I~l--PttsiWsa~ 266 (745)
T KOG0301|consen 194 LSCSNDGSIRLWDLD-GEV-LLEMHGHTNFVYSISMALSD-GLIVSTGEDRTLRIWKKD--ECVQVITL--PTTSIWSAK 266 (745)
T ss_pred EeecCCceEEEEecc-Cce-eeeeeccceEEEEEEecCCC-CeEEEecCCceEEEeecC--ceEEEEec--CccceEEEE
Confidence 788899999999994 444 57889999999999966666 799999999999999987 66665432 345677766
Q ss_pred cchhcccccCCCCccccc
Q 010390 416 STECRKLFMNGEPGWLAK 433 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~ 433 (512)
.-+.+.++..++++.+.+
T Consensus 267 ~L~NgDIvvg~SDG~VrV 284 (745)
T KOG0301|consen 267 VLLNGDIVVGGSDGRVRV 284 (745)
T ss_pred EeeCCCEEEeccCceEEE
Confidence 666667776666665443
No 141
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.93 E-value=5.3e-23 Score=188.74 Aligned_cols=291 Identities=14% Similarity=0.210 Sum_probs=222.0
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-CCcEEEEEEecCCCEEEEEeC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~~~~~l~s~~~ 128 (512)
+.+|.+++| +.+.+.||++-.+|.|-||++...-. +...+.++ ...|.+++|+ ++..|.+.+.
T Consensus 25 Ps~I~slA~---s~kS~~lAvsRt~g~IEiwN~~~~w~------------~~~vi~g~~drsIE~L~W~-e~~RLFS~g~ 88 (691)
T KOG2048|consen 25 PSEIVSLAY---SHKSNQLAVSRTDGNIEIWNLSNNWF------------LEPVIHGPEDRSIESLAWA-EGGRLFSSGL 88 (691)
T ss_pred ccceEEEEE---eccCCceeeeccCCcEEEEccCCCce------------eeEEEecCCCCceeeEEEc-cCCeEEeecC
Confidence 456788888 88888899999999999999876422 23334444 5689999999 5667888899
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
+|.|.-||+.+++....+....+.|++++.+|.+ ..++.|+.||.+..++...+.....
T Consensus 89 sg~i~EwDl~~lk~~~~~d~~gg~IWsiai~p~~-~~l~IgcddGvl~~~s~~p~~I~~~-------------------- 147 (691)
T KOG2048|consen 89 SGSITEWDLHTLKQKYNIDSNGGAIWSIAINPEN-TILAIGCDDGVLYDFSIGPDKITYK-------------------- 147 (691)
T ss_pred CceEEEEecccCceeEEecCCCcceeEEEeCCcc-ceEEeecCCceEEEEecCCceEEEE--------------------
Confidence 9999999999999999999999999999999988 8999999999877777765543221
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccc-cccCeeEEEeCCCCC
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKET-RLHGISSLSQDSNGV 287 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-~~~~i~~~~~~~~~~ 287 (512)
..+....+.+.++.|+|++..++. |+.||.|++||..++.........-. .... ...-|.++.+-.++
T Consensus 148 -----r~l~rq~sRvLslsw~~~~~~i~~-Gs~Dg~Iriwd~~~~~t~~~~~~~~d----~l~k~~~~iVWSv~~Lrd~- 216 (691)
T KOG2048|consen 148 -----RSLMRQKSRVLSLSWNPTGTKIAG-GSIDGVIRIWDVKSGQTLHIITMQLD----RLSKREPTIVWSVLFLRDS- 216 (691)
T ss_pred -----eecccccceEEEEEecCCccEEEe-cccCceEEEEEcCCCceEEEeeeccc----ccccCCceEEEEEEEeecC-
Confidence 122233578999999999998887 77899999999998887652110000 1111 23347788877554
Q ss_pred EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC---CCceeccccC
Q 010390 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA---DPIKLKSHDG 364 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~---~~~~~~~h~~ 364 (512)
.|++|..-|+|.+||-..+ ..+..+..+ ...+.+++..++++++++++.|+.|..|...+... .......|..
T Consensus 217 tI~sgDS~G~V~FWd~~~g--TLiqS~~~h--~adVl~Lav~~~~d~vfsaGvd~~ii~~~~~~~~~~wv~~~~r~~h~h 292 (691)
T KOG2048|consen 217 TIASGDSAGTVTFWDSIFG--TLIQSHSCH--DADVLALAVADNEDRVFSAGVDPKIIQYSLTTNKSEWVINSRRDLHAH 292 (691)
T ss_pred cEEEecCCceEEEEcccCc--chhhhhhhh--hcceeEEEEcCCCCeEEEccCCCceEEEEecCCccceeeeccccCCcc
Confidence 6899999999999997553 233333333 24578899999999999999999999998876643 1223456788
Q ss_pred CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 365 EVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 365 ~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
.|.+++..+ ..+++|+.|..+.+-....
T Consensus 293 dvrs~av~~---~~l~sgG~d~~l~i~~s~~ 320 (691)
T KOG2048|consen 293 DVRSMAVIE---NALISGGRDFTLAICSSRE 320 (691)
T ss_pred cceeeeeec---ceEEecceeeEEEEccccc
Confidence 899999987 4899999999998876655
No 142
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.92 E-value=9.4e-24 Score=186.60 Aligned_cols=266 Identities=15% Similarity=0.265 Sum_probs=205.0
Q ss_pred cceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 53 PLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 53 v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
++++.| +.... .+|+.+.|..|++|.-....++ ...+....+. .-.|++......++++|+..+.
T Consensus 37 ~~s~~w---~~~n~lvvas~~gdk~~~~~~K~g~~~~---------Vp~~~k~~gd--~~~Cv~~~s~S~y~~sgG~~~~ 102 (673)
T KOG4378|consen 37 DFSFNW---QRRNFLVVASMAGDKVMRIKEKDGKTPE---------VPRVRKLTGD--NAFCVACASQSLYEISGGQSGC 102 (673)
T ss_pred ceeeec---cccceEEEeecCCceeEEEecccCCCCc---------cceeeccccc--hHHHHhhhhcceeeeccCcCce
Confidence 666666 44443 3334467888999986654321 2223333333 2333333344589999999999
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
|+|||++...+.+.+.+|...|+++.++-.+ .+||+++..|.|.+..+.++.....+..
T Consensus 103 Vkiwdl~~kl~hr~lkdh~stvt~v~YN~~D-eyiAsvs~gGdiiih~~~t~~~tt~f~~-------------------- 161 (673)
T KOG4378|consen 103 VKIWDLRAKLIHRFLKDHQSTVTYVDYNNTD-EYIASVSDGGDIIIHGTKTKQKTTTFTI-------------------- 161 (673)
T ss_pred eeehhhHHHHHhhhccCCcceeEEEEecCCc-ceeEEeccCCcEEEEecccCccccceec--------------------
Confidence 9999999888888899999999999999877 8999999999999999987765443211
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEE
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLT 290 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~ 290 (512)
.....|.-+.|++..+.++.+.+++|.|.+||+........ -...|..+...++|+|.. .+|+
T Consensus 162 ------~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~~----------~~~~HsAP~~gicfspsne~l~v 225 (673)
T KOG4378|consen 162 ------DSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIFH----------ASEAHSAPCRGICFSPSNEALLV 225 (673)
T ss_pred ------CCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCcccc----------hhhhccCCcCcceecCCccceEE
Confidence 11335678999999999998888999999999998776654 367788889999999954 5778
Q ss_pred EEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEE
Q 010390 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVN 370 (512)
Q Consensus 291 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~ 370 (512)
+.+.|..|.+||++... ....+. ...+...++|+++|.+|++|...|.|..||++..+.++.....|+..|++++
T Consensus 226 sVG~Dkki~~yD~~s~~--s~~~l~---y~~Plstvaf~~~G~~L~aG~s~G~~i~YD~R~~k~Pv~v~sah~~sVt~va 300 (673)
T KOG4378|consen 226 SVGYDKKINIYDIRSQA--STDRLT---YSHPLSTVAFSECGTYLCAGNSKGELIAYDMRSTKAPVAVRSAHDASVTRVA 300 (673)
T ss_pred EecccceEEEeeccccc--ccceee---ecCCcceeeecCCceEEEeecCCceEEEEecccCCCCceEeeecccceeEEE
Confidence 88999999999987532 222222 1234667999999999999999999999999999988999999999999999
Q ss_pred eCCC
Q 010390 371 WCPN 374 (512)
Q Consensus 371 ~~~~ 374 (512)
|-+.
T Consensus 301 fq~s 304 (673)
T KOG4378|consen 301 FQPS 304 (673)
T ss_pred eeec
Confidence 9775
No 143
>KOG2096 consensus WD40 repeat protein [General function prediction only]
Probab=99.92 E-value=3.3e-23 Score=173.29 Aligned_cols=296 Identities=15% Similarity=0.244 Sum_probs=200.5
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee--eccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT--GALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFA 176 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~--~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 176 (512)
+..+++|.+.|++++|+.||++|++++.|++|+||++.+-... +.++ -.-+..+.+.|.|+-...++++-...+++
T Consensus 79 ~~~LKgH~~~vt~~~FsSdGK~lat~~~Dr~Ir~w~~~DF~~~eHr~~R~nve~dhpT~V~FapDc~s~vv~~~~g~~l~ 158 (420)
T KOG2096|consen 79 VSVLKGHKKEVTDVAFSSDGKKLATISGDRSIRLWDVRDFENKEHRCIRQNVEYDHPTRVVFAPDCKSVVVSVKRGNKLC 158 (420)
T ss_pred hhhhhccCCceeeeEEcCCCceeEEEeCCceEEEEecchhhhhhhhHhhccccCCCceEEEECCCcceEEEEEccCCEEE
Confidence 5678999999999999999999999999999999999764211 1111 11235678899999877788887778999
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~ 256 (512)
+|.+...+.-... +..........-..|...+..+-...++.++++++ .|..|.+|+++ ++.+
T Consensus 159 vyk~~K~~dG~~~---------------~~~v~~D~~~f~~kh~v~~i~iGiA~~~k~imsas-~dt~i~lw~lk-Gq~L 221 (420)
T KOG2096|consen 159 VYKLVKKTDGSGS---------------HHFVHIDNLEFERKHQVDIINIGIAGNAKYIMSAS-LDTKICLWDLK-GQLL 221 (420)
T ss_pred EEEeeecccCCCC---------------cccccccccccchhcccceEEEeecCCceEEEEec-CCCcEEEEecC-Ccee
Confidence 9987543321100 00001111112234555666666666777777654 79999999999 5544
Q ss_pred ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCC------CceEeeeeceeceeEEEEEECC
Q 010390 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK------GPIQHFSGCRIESFYVKSEICP 330 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~------~~~~~~~~~~~~~~~~~~~~s~ 330 (512)
.. .......-+..+.+|+|+++++++.--.|++|.+--... ..+..+.+|. ..+..++|++
T Consensus 222 ~~-----------idtnq~~n~~aavSP~GRFia~~gFTpDVkVwE~~f~kdG~fqev~rvf~LkGH~--saV~~~aFsn 288 (420)
T KOG2096|consen 222 QS-----------IDTNQSSNYDAAVSPDGRFIAVSGFTPDVKVWEPIFTKDGTFQEVKRVFSLKGHQ--SAVLAAAFSN 288 (420)
T ss_pred ee-----------eccccccccceeeCCCCcEEEEecCCCCceEEEEEeccCcchhhhhhhheeccch--hheeeeeeCC
Confidence 32 223333456688999999999999999999999743222 2344556664 5688899999
Q ss_pred CCCEEEEecCCCCEEEEecCCC----CCC--Cc----eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 331 NASHILSGSSDGNAYVWQVNKP----QAD--PI----KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~----~~~--~~----~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
+...+++.+.||+++|||++-. +.+ +. .+..-.+.-..+..+|.+ ..|+. +....++++..++|+...
T Consensus 289 ~S~r~vtvSkDG~wriwdtdVrY~~~qDpk~Lk~g~~pl~aag~~p~RL~lsP~g-~~lA~-s~gs~l~~~~se~g~~~~ 366 (420)
T KOG2096|consen 289 SSTRAVTVSKDGKWRIWDTDVRYEAGQDPKILKEGSAPLHAAGSEPVRLELSPSG-DSLAV-SFGSDLKVFASEDGKDYP 366 (420)
T ss_pred CcceeEEEecCCcEEEeeccceEecCCCchHhhcCCcchhhcCCCceEEEeCCCC-cEEEe-ecCCceEEEEcccCccch
Confidence 9999999999999999998632 111 11 112223444589999999 55554 445679999999988666
Q ss_pred cccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCC
Q 010390 401 MRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSD 452 (512)
Q Consensus 401 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~ 452 (512)
+++.. ++ ..+. .++|+++|++++.....
T Consensus 367 ~~e~~-------------------h~----~~Is-~is~~~~g~~~atcGdr 394 (420)
T KOG2096|consen 367 ELEDI-------------------HS----TTIS-SISYSSDGKYIATCGDR 394 (420)
T ss_pred hHHHh-------------------hc----Ccee-eEEecCCCcEEeeecce
Confidence 53321 11 1122 66888888888766433
No 144
>KOG1063 consensus RNA polymerase II elongator complex, subunit ELP2, WD repeat superfamily [Chromatin structure and dynamics; Transcription]
Probab=99.92 E-value=1.6e-22 Score=186.00 Aligned_cols=329 Identities=15% Similarity=0.196 Sum_probs=235.9
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
.+.||++.|+++.| +|.+..|.+++.|.++.+|.-.+..-.- .....+...-+......+..|+|++..++
T Consensus 262 ll~GHeDWV~sv~W---~p~~~~LLSASaDksmiiW~pd~~tGiW------v~~vRlGe~gg~a~GF~g~lw~~n~~~ii 332 (764)
T KOG1063|consen 262 LLMGHEDWVYSVWW---HPEGLDLLSASADKSMIIWKPDENTGIW------VDVVRLGEVGGSAGGFWGGLWSPNSNVII 332 (764)
T ss_pred hhcCcccceEEEEE---ccchhhheecccCcceEEEecCCccceE------EEEEEeecccccccceeeEEEcCCCCEEE
Confidence 45699999999999 9999899999999999999865441100 01112333335566799999999999999
Q ss_pred EEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC----------------
Q 010390 125 TASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS---------------- 185 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~---------------- 185 (512)
+-+.-|-.++|...+. .....+.+|.+.|..++|.|.| .+|++.+.|.+-|++-.-..+.
T Consensus 333 ~~g~~Gg~hlWkt~d~~~w~~~~~iSGH~~~V~dv~W~psG-eflLsvs~DQTTRlFa~wg~q~~wHEiaRPQiHGyDl~ 411 (764)
T KOG1063|consen 333 AHGRTGGFHLWKTKDKTFWTQEPVISGHVDGVKDVDWDPSG-EFLLSVSLDQTTRLFARWGRQQEWHEIARPQIHGYDLT 411 (764)
T ss_pred EecccCcEEEEeccCccceeeccccccccccceeeeecCCC-CEEEEeccccceeeecccccccceeeecccccccccce
Confidence 9999999999983322 3344578999999999999998 8999999999988864331100
Q ss_pred -CCCcc-ccceeee------------------------------------c---------------ccccccc----cc-
Q 010390 186 -PKSNC-AESFVFS------------------------------------S---------------AVVKGAH----LL- 207 (512)
Q Consensus 186 -~~~~~-~~~~~~~------------------------------------~---------------~~~~~~~----~~- 207 (512)
..... ...++.. + ....+.. ..
T Consensus 412 c~~~vn~~~~FVSgAdEKVlRvF~aPk~fv~~l~~i~g~~~~~~~~~p~gA~VpaLGLSnKa~~~~e~~~G~~~~~~~et 491 (764)
T KOG1063|consen 412 CLSFVNEDLQFVSGADEKVLRVFEAPKSFVKSLMAICGKCFKGSDELPDGANVPALGLSNKAFFPGETNTGGEAAVCAET 491 (764)
T ss_pred eeehccCCceeeecccceeeeeecCcHHHHHHHHHHhCccccCchhcccccccccccccCCCCcccccccccccceeeec
Confidence 00000 0000000 0 0000000 00
Q ss_pred -----------c----------ccccceecccccccEEEEEEeecCCEEEEEeec----CCeEEEEeccCccceecccCC
Q 010390 208 -----------S----------QSKRVSRRKAASMSITSVLYLKDEVSIATASAV----NSIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 208 -----------~----------~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~----dg~i~iwd~~~~~~~~~~~~~ 262 (512)
+ ......++.+|...|.+++.+|+++.+++++-. ...|++|+..+.....
T Consensus 492 ~~~~~p~~L~ePP~EdqLq~~tLwPEv~KLYGHGyEv~~l~~s~~gnliASaCKS~~~ehAvI~lw~t~~W~~~~----- 566 (764)
T KOG1063|consen 492 PLAAAPCELTEPPTEDQLQQNTLWPEVHKLYGHGYEVYALAISPTGNLIASACKSSLKEHAVIRLWNTANWLQVQ----- 566 (764)
T ss_pred ccccCchhccCCChHHHHHHhccchhhHHhccCceeEEEEEecCCCCEEeehhhhCCccceEEEEEeccchhhhh-----
Confidence 0 001123567899999999999999999987632 2369999998876654
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
.+..|.-.|+.++|+|||++|++.+.|+++.+|.................+...|..+.|+|++.++++++.|.
T Consensus 567 ------~L~~HsLTVT~l~FSpdg~~LLsvsRDRt~sl~~~~~~~~~e~~fa~~k~HtRIIWdcsW~pde~~FaTaSRDK 640 (764)
T KOG1063|consen 567 ------ELEGHSLTVTRLAFSPDGRYLLSVSRDRTVSLYEVQEDIKDEFRFACLKAHTRIIWDCSWSPDEKYFATASRDK 640 (764)
T ss_pred ------eecccceEEEEEEECCCCcEEEEeecCceEEeeeeecccchhhhhccccccceEEEEcccCcccceeEEecCCc
Confidence 47888899999999999999999999999999998543332222222334456788999999999999999999
Q ss_pred CEEEEecCCC--CCCCc-eeccccCCeEEEEeCCCCC----CeEEEEeCCCcEEEEeCC
Q 010390 343 NAYVWQVNKP--QADPI-KLKSHDGEVTAVNWCPNEA----GKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 343 ~i~iw~~~~~--~~~~~-~~~~h~~~v~~v~~~~~~~----~~l~s~~~dg~i~vwd~~ 394 (512)
+|.+|..... +.... ....+...|++++|.|-.. ..++.|-..|.|.+|...
T Consensus 641 ~VkVW~~~~~~d~~i~~~a~~~~~~aVTAv~~~~~~~~e~~~~vavGle~GeI~l~~~~ 699 (764)
T KOG1063|consen 641 KVKVWEEPDLRDKYISRFACLKFSLAVTAVAYLPVDHNEKGDVVAVGLEKGEIVLWRRK 699 (764)
T ss_pred eEEEEeccCchhhhhhhhchhccCCceeeEEeeccccccccceEEEEecccEEEEEecc
Confidence 9999998876 32222 3456789999999986421 367788899999999965
No 145
>KOG4328 consensus WD40 protein [Function unknown]
Probab=99.92 E-value=3e-23 Score=181.71 Aligned_cols=263 Identities=13% Similarity=0.177 Sum_probs=199.0
Q ss_pred eeccccCCCcEEEEEEecCC--CEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc
Q 010390 101 ISDWVAHQNAIFDLCWIKED--TNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS 174 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~--~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~ 174 (512)
....+-|.+.|++++|+|.. +.+++|..-|.|-+||+.+. .-+..+..|.++|.+|.|+|.+...+++.+.||+
T Consensus 179 ~~v~kv~~~Rit~l~fHPt~~~~lva~GdK~G~VG~Wn~~~~~~d~d~v~~f~~hs~~Vs~l~F~P~n~s~i~ssSyDGt 258 (498)
T KOG4328|consen 179 LNVAKVTDRRITSLAFHPTENRKLVAVGDKGGQVGLWNFGTQEKDKDGVYLFTPHSGPVSGLKFSPANTSQIYSSSYDGT 258 (498)
T ss_pred cceeEecccceEEEEecccCcceEEEEccCCCcEEEEecCCCCCccCceEEeccCCccccceEecCCChhheeeeccCce
Confidence 44556788999999999943 57789999999999999533 2355677899999999999999899999999999
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
|++-|++........ ........+.++.|+.+...+++.+ .=|.+.+||+++..
T Consensus 259 iR~~D~~~~i~e~v~-------------------------s~~~d~~~fs~~d~~~e~~~vl~~~-~~G~f~~iD~R~~~ 312 (498)
T KOG4328|consen 259 IRLQDFEGNISEEVL-------------------------SLDTDNIWFSSLDFSAESRSVLFGD-NVGNFNVIDLRTDG 312 (498)
T ss_pred eeeeeecchhhHHHh-------------------------hcCccceeeeeccccCCCccEEEee-cccceEEEEeecCC
Confidence 999999865432211 1112334677788888887777755 45699999999887
Q ss_pred ceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 255 AQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 255 ~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
.... ....|...|..|+++|.. .+|++++.|++.+|||++....+....+....+...|.++.|||.+.
T Consensus 313 s~~~----------~~~lh~kKI~sv~~NP~~p~~laT~s~D~T~kIWD~R~l~~K~sp~lst~~HrrsV~sAyFSPs~g 382 (498)
T KOG4328|consen 313 SEYE----------NLRLHKKKITSVALNPVCPWFLATASLDQTAKIWDLRQLRGKASPFLSTLPHRRSVNSAYFSPSGG 382 (498)
T ss_pred ccch----------hhhhhhcccceeecCCCCchheeecccCcceeeeehhhhcCCCCcceecccccceeeeeEEcCCCC
Confidence 6543 356666789999999965 57899999999999999887655432333334445678899999988
Q ss_pred EEEEecCCCCEEEEecC---CCCCCCceeccccC------CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 334 HILSGSSDGNAYVWQVN---KPQADPIKLKSHDG------EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 334 ~l~~g~~dg~i~iw~~~---~~~~~~~~~~~h~~------~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.|++.+.|..|+|||.. ..-++..+ ..|.. ......|.|+. .+++.|-.-..|-|+|-..++++..
T Consensus 383 tl~TT~~D~~IRv~dss~~sa~~~p~~~-I~Hn~~t~RwlT~fKA~W~P~~-~li~vg~~~r~IDv~~~~~~q~v~e 457 (498)
T KOG4328|consen 383 TLLTTCQDNEIRVFDSSCISAKDEPLGT-IPHNNRTGRWLTPFKAAWDPDY-NLIVVGRYPRPIDVFDGNGGQMVCE 457 (498)
T ss_pred ceEeeccCCceEEeecccccccCCccce-eeccCcccccccchhheeCCCc-cEEEEeccCcceeEEcCCCCEEeee
Confidence 89999999999999984 22222222 22321 24456799988 8999999888999999999886554
No 146
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.92 E-value=2.2e-24 Score=209.44 Aligned_cols=295 Identities=20% Similarity=0.313 Sum_probs=222.8
Q ss_pred EecCCCc-EEEEee----------CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE----EE
Q 010390 60 KTSKNSH-IFAVSD----------EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN----IL 124 (512)
Q Consensus 60 ~~s~~~~-~latg~----------~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~----l~ 124 (512)
+|+|++. ++|+|. .+.++-||.+.-..... +.+.+..+ .-....+.++|.+.+.. |+
T Consensus 13 awSp~~~~~laagt~aq~~D~sfst~~slEifeld~~~~~~-------dlk~~~s~-~s~~rF~kL~W~~~g~~~~GlIa 84 (1049)
T KOG0307|consen 13 AWSPASPPLLAAGTAAQQFDASFSTSASLEIFELDFSDESS-------DLKPVGSL-QSSNRFNKLAWGSYGSHSHGLIA 84 (1049)
T ss_pred EecCCCchhhHHHhhhhccccccccccccceeeecccCccc-------cccccccc-cccccceeeeecccCCCccceee
Confidence 3488886 677653 24456666554322110 01122222 23567899999997766 88
Q ss_pred EEeCCCcEEEEeCCCC------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 125 TASGDQTIKIWDAEKK------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
.|..||.|.+||...- ..+.+...|.+.|..+.|++..+++|++|+.||.|.|||+...+......
T Consensus 85 GG~edG~I~ly~p~~~~~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~geI~iWDlnn~~tP~~~~-------- 156 (1049)
T KOG0307|consen 85 GGLEDGNIVLYDPASIIANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDGEILIWDLNKPETPFTPG-------- 156 (1049)
T ss_pred ccccCCceEEecchhhccCcchHHHhhhcccCCceeeeeccccCCceeeccCCCCcEEEeccCCcCCCCCCC--------
Confidence 8999999999997652 34566788999999999999998899999999999999998765443221
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.......|.+++|+..-..++++++.+|.+.|||++..+.+.... .......+.
T Consensus 157 -----------------~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls---------~~~~~~~~S 210 (1049)
T KOG0307|consen 157 -----------------SQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLS---------DTPGRMHCS 210 (1049)
T ss_pred -----------------CCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCcccccc---------cCCCcccee
Confidence 112356899999999988888889899999999999887665432 112224478
Q ss_pred EEEeCCCCC-EEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCC
Q 010390 279 SLSQDSNGV-FLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 279 ~~~~~~~~~-~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~ 353 (512)
.++|+|+.. .|++++.| -.|.+||++.. ..+++.+.+|. ..+.++.|++.+ ++|++++.|+.|.+|+.++++
T Consensus 211 ~l~WhP~~aTql~~As~dd~~PviqlWDlR~a-ssP~k~~~~H~--~GilslsWc~~D~~lllSsgkD~~ii~wN~~tgE 287 (1049)
T KOG0307|consen 211 VLAWHPDHATQLLVASGDDSAPVIQLWDLRFA-SSPLKILEGHQ--RGILSLSWCPQDPRLLLSSGKDNRIICWNPNTGE 287 (1049)
T ss_pred eeeeCCCCceeeeeecCCCCCceeEeeccccc-CCchhhhcccc--cceeeeccCCCCchhhhcccCCCCeeEecCCCce
Confidence 999999864 56666655 36999999764 45666676665 448889999977 888999999999999999987
Q ss_pred CCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 354 ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 354 ~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
. +..+.....++..+.|+|..+.+++.++-||.|-|+.+.+.....
T Consensus 288 v-l~~~p~~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~~~~ 333 (1049)
T KOG0307|consen 288 V-LGELPAQGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTDTDL 333 (1049)
T ss_pred E-eeecCCCCcceeeeeecCCCcchhhhheeccceeeeeeecCCccc
Confidence 6 456666778999999999998899999999999999998876433
No 147
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.92 E-value=6.6e-23 Score=177.05 Aligned_cols=316 Identities=17% Similarity=0.243 Sum_probs=219.9
Q ss_pred eEeecCCccCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
+.+.++ ...+|.++.| .++.. .||||+.|..|+||-++...+... ......+..+..|..+|+++.|+|+|
T Consensus 6 ~ei~wH-~~~pv~s~df---q~n~~~~laT~G~D~~iriW~v~r~~~~~~----~~~V~y~s~Ls~H~~aVN~vRf~p~g 77 (434)
T KOG1009|consen 6 IEISWH-DHEPVYSVDF---QKNSLNKLATAGGDKDIRIWKVNRSEPGGG----DMKVEYLSSLSRHTRAVNVVRFSPDG 77 (434)
T ss_pred eEEEec-CCCceEEEEe---ccCcccceecccCccceeeeeeeecCCCCC----ceeEEEeecccCCcceeEEEEEcCCc
Confidence 344444 5678999999 66655 999999999999999887654221 12334567889999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCC--------C--------CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390 121 TNILTASGDQTIKIWDAE--------K--------KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~--------~--------~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 184 (512)
+.|++|+.+|.|.+|... + ......+.+|...|..++|+|++ +++++++.|..+++||+..+.
T Consensus 78 elLASg~D~g~v~lWk~~~~~~~~~d~e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~-~~l~s~s~dns~~l~Dv~~G~ 156 (434)
T KOG1009|consen 78 ELLASGGDGGEVFLWKQGDVRIFDADTEADLNKEKWVVKKVLRGHRDDIYDLAWSPDS-NFLVSGSVDNSVRLWDVHAGQ 156 (434)
T ss_pred CeeeecCCCceEEEEEecCcCCccccchhhhCccceEEEEEecccccchhhhhccCCC-ceeeeeeccceEEEEEeccce
Confidence 999999999999999765 2 12345567899999999999998 999999999999999999776
Q ss_pred CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC---
Q 010390 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW--- 261 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~--- 261 (512)
... .+..|...+..++|.|-++++++-+ .|...+.+.+...+.......
T Consensus 157 l~~---------------------------~~~dh~~yvqgvawDpl~qyv~s~s-~dr~~~~~~~~~~~~~~~~~~~~m 208 (434)
T KOG1009|consen 157 LLA---------------------------ILDDHEHYVQGVAWDPLNQYVASKS-SDRHPEGFSAKLKQVIKRHGLDIM 208 (434)
T ss_pred eEe---------------------------eccccccccceeecchhhhhhhhhc-cCcccceeeeeeeeeeeeeeeeEe
Confidence 544 4457788999999999999888766 466666666654433322110
Q ss_pred -----CCcccccccccc----ccCeeEEEeCCCCCEEEEEec----C-----CeEEEEEcccCCCCceEeeeeceeceeE
Q 010390 262 -----PHAESSSAKETR----LHGISSLSQDSNGVFLTASCM----D-----HRIYLYNVLQLDKGPIQHFSGCRIESFY 323 (512)
Q Consensus 262 -----~~~~~~~~~~~~----~~~i~~~~~~~~~~~l~~~~~----d-----g~i~i~d~~~~~~~~~~~~~~~~~~~~~ 323 (512)
.+.........| ..-...++|+|+|.+|++... . +..++|+-... ..+...+.+... ..
T Consensus 209 ~~~~~~~~e~~s~rLfhDeTlksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l-~rP~~~lp~~~k--~~ 285 (434)
T KOG1009|consen 209 PAKAFNEREGKSTRLFHDETLKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDL-KRPAARLPSPKK--PA 285 (434)
T ss_pred eecccCCCCcceeeeeecCchhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccc-cCceeecCCCCc--ce
Confidence 000000001111 223567899999999887542 2 23455553321 223333322211 11
Q ss_pred EEEEEC------------------CCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 324 VKSEIC------------------PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 324 ~~~~~s------------------~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
..+.++ |-+-.+|.++ .+.|+|||.++.......-.-|-..|++++|+++| ..|+..|.|
T Consensus 286 lavr~~pVy~elrp~~~~~~~~~lpyrlvfaiAt-~~svyvydtq~~~P~~~v~nihy~~iTDiaws~dg-~~l~vSS~D 363 (434)
T KOG1009|consen 286 LAVRFSPVYYELRPLSSEKFLFVLPYRLVFAIAT-KNSVYVYDTQTLEPLAVVDNIHYSAITDIAWSDDG-SVLLVSSTD 363 (434)
T ss_pred EEEEeeeeEEEeccccccccccccccceEEEEee-cceEEEeccccccceEEEeeeeeeeecceeecCCC-cEEEEeccC
Confidence 122222 2223345555 55699999988776555566789999999999999 899999999
Q ss_pred CcEEEEeCCCCccc
Q 010390 386 YTVRLWSLENSRCS 399 (512)
Q Consensus 386 g~i~vwd~~~~~~~ 399 (512)
|-..+-.++..++-
T Consensus 364 GyCS~vtfe~~elg 377 (434)
T KOG1009|consen 364 GFCSLVTFEPWELG 377 (434)
T ss_pred CceEEEEEcchhcc
Confidence 99988888877654
No 148
>KOG0650 consensus WD40 repeat nucleolar protein Bop1, involved in ribosome biogenesis [Translation, ribosomal structure and biogenesis]
Probab=99.92 E-value=3.2e-23 Score=187.37 Aligned_cols=275 Identities=15% Similarity=0.173 Sum_probs=207.6
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
+-..+.+|++.|.+|...|.|.+|++|+.||+|+||.+.+|.|+.++. ..+.|.||+|+|.....++++..+..+.+-+
T Consensus 392 ~~lvyrGHtg~Vr~iSvdp~G~wlasGsdDGtvriWEi~TgRcvr~~~-~d~~I~~vaw~P~~~~~vLAvA~~~~~~ivn 470 (733)
T KOG0650|consen 392 CALVYRGHTGLVRSISVDPSGEWLASGSDDGTVRIWEIATGRCVRTVQ-FDSEIRSVAWNPLSDLCVLAVAVGECVLIVN 470 (733)
T ss_pred eeeeEeccCCeEEEEEecCCcceeeecCCCCcEEEEEeecceEEEEEe-ecceeEEEEecCCCCceeEEEEecCceEEeC
Confidence 345678999999999999999999999999999999999999999887 4568999999998866666666666677777
Q ss_pred CCCCCCCCCccccceeeecccc----------cccccccccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEE
Q 010390 180 LRCKSSPKSNCAESFVFSSAVV----------KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKF 247 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~----------~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~i 247 (512)
..-+..+.....+..+...... ...........+.....|...|..+.||..|.+++++...+ ..|.|
T Consensus 471 p~~G~~~e~~~t~ell~~~~~~~~p~~~~~~W~~~~~~e~~~~v~~~I~~~k~i~~vtWHrkGDYlatV~~~~~~~~Vli 550 (733)
T KOG0650|consen 471 PIFGDRLEVGPTKELLASAPNESEPDAAVVTWSRASLDELEKGVCIVIKHPKSIRQVTWHRKGDYLATVMPDSGNKSVLI 550 (733)
T ss_pred ccccchhhhcchhhhhhcCCCccCCcccceeechhhhhhhccceEEEEecCCccceeeeecCCceEEEeccCCCcceEEE
Confidence 6555333322222222111000 00000011122345567889999999999999999876433 46888
Q ss_pred EeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390 248 WDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE 327 (512)
Q Consensus 248 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
.++....... .+....+.|.++.|+|...+|++++ ...|++||+.. +..++.+. .....+..++
T Consensus 551 HQLSK~~sQ~-----------PF~kskG~vq~v~FHPs~p~lfVaT-q~~vRiYdL~k--qelvKkL~--tg~kwiS~ms 614 (733)
T KOG0650|consen 551 HQLSKRKSQS-----------PFRKSKGLVQRVKFHPSKPYLFVAT-QRSVRIYDLSK--QELVKKLL--TGSKWISSMS 614 (733)
T ss_pred EecccccccC-----------chhhcCCceeEEEecCCCceEEEEe-ccceEEEehhH--HHHHHHHh--cCCeeeeeee
Confidence 8887665442 3455567799999999999998885 56899999865 22222221 1224577799
Q ss_pred ECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 328 ICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 328 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.+|.|.-|+.|+.|+.+..||+.-...+...+..|...|++|+|++.- .++++|+.||++.|+.
T Consensus 615 ihp~GDnli~gs~d~k~~WfDldlsskPyk~lr~H~~avr~Va~H~ry-PLfas~sdDgtv~Vfh 678 (733)
T KOG0650|consen 615 IHPNGDNLILGSYDKKMCWFDLDLSSKPYKTLRLHEKAVRSVAFHKRY-PLFASGSDDGTVIVFH 678 (733)
T ss_pred ecCCCCeEEEecCCCeeEEEEcccCcchhHHhhhhhhhhhhhhhcccc-ceeeeecCCCcEEEEe
Confidence 999999999999999999999998888788999999999999999988 6999999999999875
No 149
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=8.3e-25 Score=201.76 Aligned_cols=257 Identities=19% Similarity=0.319 Sum_probs=209.9
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG 144 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 144 (512)
+.+++.+-.+-.+++||.+. +-.|...|.++..-..++.+++|+.|..+-+|.+.....+.
T Consensus 4 ~~~~m~~~~~t~Lr~~~~~~-------------------~~~hsaav~~lk~~~s~r~~~~Gg~~~k~~L~~i~kp~~i~ 64 (825)
T KOG0267|consen 4 MEFLMKTKRATKLRVWDTRE-------------------FVAHSAAVGCLKIRKSSRSLVTGGEDEKVNLWAIGKPNAIT 64 (825)
T ss_pred ccccceeeeeeccccccchh-------------------hhhhhhhhceeeeeccceeeccCCCceeeccccccCCchhh
Confidence 34555556666788888643 34688888888886788899999999999999998888888
Q ss_pred cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390 145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT 224 (512)
Q Consensus 145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (512)
.+.+|..+|.++.|++.. .+|++|+.+|+|++||++.... .+.+.+|...+.
T Consensus 65 S~~~hespIeSl~f~~~E-~LlaagsasgtiK~wDleeAk~---------------------------vrtLtgh~~~~~ 116 (825)
T KOG0267|consen 65 SLTGHESPIESLTFDTSE-RLLAAGSASGTIKVWDLEEAKI---------------------------VRTLTGHLLNIT 116 (825)
T ss_pred eeeccCCcceeeecCcch-hhhcccccCCceeeeehhhhhh---------------------------hhhhhccccCcc
Confidence 899999999999999987 8999999999999999985433 336678888999
Q ss_pred EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc
Q 010390 225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304 (512)
Q Consensus 225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 304 (512)
++.|+|-+.+.+ .|+.|+.+++||++...+.. ...+|...+..+.|+|+|++++.++.|..+++||+.
T Consensus 117 sv~f~P~~~~~a-~gStdtd~~iwD~Rk~Gc~~-----------~~~s~~~vv~~l~lsP~Gr~v~~g~ed~tvki~d~~ 184 (825)
T KOG0267|consen 117 SVDFHPYGEFFA-SGSTDTDLKIWDIRKKGCSH-----------TYKSHTRVVDVLRLSPDGRWVASGGEDNTVKIWDLT 184 (825)
T ss_pred eeeeccceEEec-cccccccceehhhhccCcee-----------eecCCcceeEEEeecCCCceeeccCCcceeeeeccc
Confidence 999999999885 48899999999999777665 355577889999999999999999999999999986
Q ss_pred cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC
Q 010390 305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD 384 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~ 384 (512)
.+ .....|..|. ..+..+.|+|..-+++.|+.|+++++||+++.+. +.........|.+++|+|++ ..+++|..
T Consensus 185 ag--k~~~ef~~~e--~~v~sle~hp~e~Lla~Gs~d~tv~f~dletfe~-I~s~~~~~~~v~~~~fn~~~-~~~~~G~q 258 (825)
T KOG0267|consen 185 AG--KLSKEFKSHE--GKVQSLEFHPLEVLLAPGSSDRTVRFWDLETFEV-ISSGKPETDGVRSLAFNPDG-KIVLSGEQ 258 (825)
T ss_pred cc--cccccccccc--ccccccccCchhhhhccCCCCceeeeeccceeEE-eeccCCccCCceeeeecCCc-eeeecCch
Confidence 53 3444555443 3355577999999999999999999999987654 33444457789999999999 77777765
Q ss_pred CC
Q 010390 385 DY 386 (512)
Q Consensus 385 dg 386 (512)
+.
T Consensus 259 ~s 260 (825)
T KOG0267|consen 259 IS 260 (825)
T ss_pred hh
Confidence 53
No 150
>KOG1034 consensus Transcriptional repressor EED/ESC/FIE, required for transcriptional silencing, WD repeat superfamily [Transcription]
Probab=99.91 E-value=1.5e-23 Score=176.04 Aligned_cols=280 Identities=14% Similarity=0.227 Sum_probs=199.3
Q ss_pred ccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-CEEEEE
Q 010390 49 EETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-TNILTA 126 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~ 126 (512)
|...-+.++|+--+.++ -+||+|+.-|.|+|.|+.+++. ...+.+|...|+.+.++|+. ++|+++
T Consensus 88 ~~Esfytcsw~yd~~~~~p~la~~G~~GvIrVid~~~~~~-------------~~~~~ghG~sINeik~~p~~~qlvls~ 154 (385)
T KOG1034|consen 88 HDESFYTCSWSYDSNTGNPFLAAGGYLGVIRVIDVVSGQC-------------SKNYRGHGGSINEIKFHPDRPQLVLSA 154 (385)
T ss_pred CCcceEEEEEEecCCCCCeeEEeecceeEEEEEecchhhh-------------ccceeccCccchhhhcCCCCCcEEEEe
Confidence 66677788886555544 4899999999999999987643 67789999999999999955 677899
Q ss_pred eCCCcEEEEeCCCCeeeecc---cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 127 SGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
+.|..|++||+++..++..+ .+|.+.|.++.|++++ .+|++++.|.+|++|++...+........ ..+.+.
T Consensus 155 SkD~svRlwnI~~~~Cv~VfGG~egHrdeVLSvD~~~~g-d~i~ScGmDhslk~W~l~~~~f~~~lE~s-----~~~~~~ 228 (385)
T KOG1034|consen 155 SKDHSVRLWNIQTDVCVAVFGGVEGHRDEVLSVDFSLDG-DRIASCGMDHSLKLWRLNVKEFKNKLELS-----ITYSPN 228 (385)
T ss_pred cCCceEEEEeccCCeEEEEecccccccCcEEEEEEcCCC-CeeeccCCcceEEEEecChhHHhhhhhhh-----cccCCC
Confidence 99999999999999998876 6799999999999999 79999999999999999854432211100 000110
Q ss_pred ccc---cccc---ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc---cccccccc
Q 010390 204 AHL---LSQS---KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES---SSAKETRL 274 (512)
Q Consensus 204 ~~~---~~~~---~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~---~~~~~~~~ 274 (512)
... .... ........|...|.|+.|.- .++++-+ -++.|..|..-..........+.... ...+.-..
T Consensus 229 ~t~~pfpt~~~~fp~fst~diHrnyVDCvrw~g--d~ilSks-cenaI~~w~pgkl~e~~~~vkp~es~~Ti~~~~~~~~ 305 (385)
T KOG1034|consen 229 KTTRPFPTPKTHFPDFSTTDIHRNYVDCVRWFG--DFILSKS-CENAIVCWKPGKLEESIHNVKPPESATTILGEFDYPM 305 (385)
T ss_pred CccCcCCccccccccccccccccchHHHHHHHh--hheeecc-cCceEEEEecchhhhhhhccCCCccceeeeeEeccCc
Confidence 000 0000 00113456777888888864 5566544 47799999884332222111111110 01122223
Q ss_pred cCeeE--EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 275 HGISS--LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 275 ~~i~~--~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
..|.- .+|++-++.|+.|...|.|.+||++..+.....++..+.....+...+|+.|+.+|+...+|++|.-||..
T Consensus 306 c~iWfirf~~d~~~~~la~gnq~g~v~vwdL~~~ep~~~ttl~~s~~~~tVRQ~sfS~dgs~lv~vcdd~~Vwrwdrv 383 (385)
T KOG1034|consen 306 CDIWFIRFAFDPWQKMLALGNQSGKVYVWDLDNNEPPKCTTLTHSKSGSTVRQTSFSRDGSILVLVCDDGTVWRWDRV 383 (385)
T ss_pred cceEEEEEeecHHHHHHhhccCCCcEEEEECCCCCCccCceEEeccccceeeeeeecccCcEEEEEeCCCcEEEEEee
Confidence 33444 45567789999999999999999988766555566666666778889999999999999999999999853
No 151
>KOG0267 consensus Microtubule severing protein katanin p80 subunit B (contains WD40 repeats) [Cell cycle control, cell division, chromosome partitioning]
Probab=99.91 E-value=2.3e-24 Score=198.84 Aligned_cols=238 Identities=23% Similarity=0.324 Sum_probs=199.7
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
+..-|...|.++.. -..++.+++|+.|-.+-||.+..... +..+.+|+.+|.++.|+++..+|+
T Consensus 23 ~~~~hsaav~~lk~---~~s~r~~~~Gg~~~k~~L~~i~kp~~-------------i~S~~~hespIeSl~f~~~E~Lla 86 (825)
T KOG0267|consen 23 EFVAHSAAVGCLKI---RKSSRSLVTGGEDEKVNLWAIGKPNA-------------ITSLTGHESPIESLTFDTSERLLA 86 (825)
T ss_pred hhhhhhhhhceeee---eccceeeccCCCceeeccccccCCch-------------hheeeccCCcceeeecCcchhhhc
Confidence 33447777877777 56788999999999999999865433 556899999999999999999999
Q ss_pred EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
+|+.+|+|++||++..+.++++.+|...+.++.|+|.+ .++++|+.|+.+++||.+...+..
T Consensus 87 agsasgtiK~wDleeAk~vrtLtgh~~~~~sv~f~P~~-~~~a~gStdtd~~iwD~Rk~Gc~~----------------- 148 (825)
T KOG0267|consen 87 AGSASGTIKVWDLEEAKIVRTLTGHLLNITSVDFHPYG-EFFASGSTDTDLKIWDIRKKGCSH----------------- 148 (825)
T ss_pred ccccCCceeeeehhhhhhhhhhhccccCcceeeeccce-EEeccccccccceehhhhccCcee-----------------
Confidence 99999999999999999999999999999999999998 888999999999999998554433
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
.+.+|...+..+.|.|+|.+++..| +|..+++||...++... .+..|...+.++.|+|
T Consensus 149 ----------~~~s~~~vv~~l~lsP~Gr~v~~g~-ed~tvki~d~~agk~~~-----------ef~~~e~~v~sle~hp 206 (825)
T KOG0267|consen 149 ----------TYKSHTRVVDVLRLSPDGRWVASGG-EDNTVKIWDLTAGKLSK-----------EFKSHEGKVQSLEFHP 206 (825)
T ss_pred ----------eecCCcceeEEEeecCCCceeeccC-Ccceeeeeccccccccc-----------ccccccccccccccCc
Confidence 4456778899999999999999844 79999999999887665 5677888999999999
Q ss_pred CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC
Q 010390 285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
...+++.|+.|+++++||+++.+ .+. .+......+.+.+|+|++..+++|..+.
T Consensus 207 ~e~Lla~Gs~d~tv~f~dletfe--~I~--s~~~~~~~v~~~~fn~~~~~~~~G~q~s 260 (825)
T KOG0267|consen 207 LEVLLAPGSSDRTVRFWDLETFE--VIS--SGKPETDGVRSLAFNPDGKIVLSGEQIS 260 (825)
T ss_pred hhhhhccCCCCceeeeeccceeE--Eee--ccCCccCCceeeeecCCceeeecCchhh
Confidence 99999999999999999986421 111 1112234577899999999999987654
No 152
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.91 E-value=9.2e-23 Score=166.24 Aligned_cols=312 Identities=15% Similarity=0.109 Sum_probs=211.8
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCC
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKED 120 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~ 120 (512)
.++.+++|.+.|+++.| -.++ +|.+|...|.|++|++++... ...+. .|...|+.+.--|+
T Consensus 6 P~fvLRp~~~~v~s~~f---qa~~-rL~sg~~~G~V~~w~lqt~r~-------------~~~~r~~g~~~it~lq~~p~- 67 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLF---QANE-RLMSGLSVGIVKMWVLQTERD-------------LPLIRLFGRLFITNLQSIPN- 67 (323)
T ss_pred CeeEeccccchheehhh---ccch-hhhcccccceEEEEEeecCcc-------------chhhhhhccceeeceeecCC-
Confidence 45667799999999999 4444 599999999999999988754 44555 56788999998887
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-cEEEEeCCCCCCCCCccccceeeecc
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-SFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
..|.+-+.|+.+.+|++.-+..+. -|.-.++++-|++.. +...+... .+-.++-+...........
T Consensus 68 d~l~tqgRd~~L~lw~ia~s~~i~---i~Si~~nslgFCrfS---l~~~~k~~eqll~yp~rgsde~h~~D~g------- 134 (323)
T KOG0322|consen 68 DSLDTQGRDPLLILWTIAYSAFIS---IHSIVVNSLGFCRFS---LVKKPKNSEQLLEYPSRGSDETHKQDGG------- 134 (323)
T ss_pred cchhhcCCCceEEEEEccCcceEE---Eeeeeccccccccce---eccCCCcchhheecCCcccchhhhhccC-------
Confidence 578888999999999997754332 244566777776532 33333322 2222222221111000000
Q ss_pred cccccccccccccceecccccccEEEEEEe--ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYL--KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
................+.+++..+. .....++.+|.++|.+.+||+.++......... .........|..+|
T Consensus 135 -----~~tqv~i~dd~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~-~kv~~~~ash~qpv 208 (323)
T KOG0322|consen 135 -----DTTQVQIADDSERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQS-SKVESPNASHKQPV 208 (323)
T ss_pred -----ccceeEccCchhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccc-cccccchhhccCcc
Confidence 0000000001122334567777643 234567788999999999999987544332111 11122456788899
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
.++.+.+....=++|+.+..+..|.+...... ++...... .+..+..+.+-||++.+|+++.|+.||||+.++... +
T Consensus 209 lsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~l-knpGv~gvrIRpD~KIlATAGWD~RiRVyswrtl~p-L 286 (323)
T KOG0322|consen 209 LSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITL-KNPGVSGVRIRPDGKILATAGWDHRIRVYSWRTLNP-L 286 (323)
T ss_pred eeeeechhhcCCcCCCccccceeeeeccccCcccccceEEe-cCCCccceEEccCCcEEeecccCCcEEEEEeccCCc-h
Confidence 99999987777788888889999998653221 11111111 112244578889999999999999999999999876 5
Q ss_pred ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
..+..|.+.|++++|+|+. .++|++|.|++|.+|++
T Consensus 287 AVLkyHsagvn~vAfspd~-~lmAaaskD~rISLWkL 322 (323)
T KOG0322|consen 287 AVLKYHSAGVNAVAFSPDC-ELMAAASKDARISLWKL 322 (323)
T ss_pred hhhhhhhcceeEEEeCCCC-chhhhccCCceEEeeec
Confidence 7899999999999999998 79999999999999986
No 153
>KOG1273 consensus WD40 repeat protein [General function prediction only]
Probab=99.91 E-value=4.7e-22 Score=166.22 Aligned_cols=254 Identities=13% Similarity=0.138 Sum_probs=186.3
Q ss_pred EEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 111 IFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 111 V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
..|+.|++.|.+||+|+.||.|.|||+.+...-+.+.+|..+|++++|+++| +.|++++.|..|.+||+..+......
T Consensus 26 a~~~~Fs~~G~~lAvGc~nG~vvI~D~~T~~iar~lsaH~~pi~sl~WS~dg-r~LltsS~D~si~lwDl~~gs~l~ri- 103 (405)
T KOG1273|consen 26 AECCQFSRWGDYLAVGCANGRVVIYDFDTFRIARMLSAHVRPITSLCWSRDG-RKLLTSSRDWSIKLWDLLKGSPLKRI- 103 (405)
T ss_pred cceEEeccCcceeeeeccCCcEEEEEccccchhhhhhccccceeEEEecCCC-CEeeeecCCceeEEEeccCCCceeEE-
Confidence 7899999999999999999999999999999989999999999999999998 99999999999999999988765543
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
....+|+.+.|+|.....+++.-.+..-.+-++............ .
T Consensus 104 ---------------------------rf~spv~~~q~hp~k~n~~va~~~~~sp~vi~~s~~~h~~Lp~d~-------d 149 (405)
T KOG1273|consen 104 ---------------------------RFDSPVWGAQWHPRKRNKCVATIMEESPVVIDFSDPKHSVLPKDD-------D 149 (405)
T ss_pred ---------------------------EccCccceeeeccccCCeEEEEEecCCcEEEEecCCceeeccCCC-------c
Confidence 235689999999977666555555655666666543322211100 0
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
......-.+..|++.|+++++|...|.+.++|..+.+. +..+.-.. ...+..+.++..|++|+..+.|..|+.|++.
T Consensus 150 ~dln~sas~~~fdr~g~yIitGtsKGkllv~~a~t~e~--vas~rits-~~~IK~I~~s~~g~~liiNtsDRvIR~ye~~ 226 (405)
T KOG1273|consen 150 GDLNSSASHGVFDRRGKYIITGTSKGKLLVYDAETLEC--VASFRITS-VQAIKQIIVSRKGRFLIINTSDRVIRTYEIS 226 (405)
T ss_pred cccccccccccccCCCCEEEEecCcceEEEEecchhee--eeeeeech-heeeeEEEEeccCcEEEEecCCceEEEEehh
Confidence 11111223346889999999999999999999876533 22222211 2346678899999999999999999999986
Q ss_pred CCC------CCC--ceec--cccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCcccccccC
Q 010390 351 KPQ------ADP--IKLK--SHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMRSP 404 (512)
Q Consensus 351 ~~~------~~~--~~~~--~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~ 404 (512)
.-- .+. ..+. -....=.+++|+.+| .+++.++ .-..++||.-..|.+++.++-
T Consensus 227 di~~~~r~~e~e~~~K~qDvVNk~~Wk~ccfs~dg-eYv~a~s~~aHaLYIWE~~~GsLVKILhG 290 (405)
T KOG1273|consen 227 DIDDEGRDGEVEPEHKLQDVVNKLQWKKCCFSGDG-EYVCAGSARAHALYIWEKSIGSLVKILHG 290 (405)
T ss_pred hhcccCccCCcChhHHHHHHHhhhhhhheeecCCc-cEEEeccccceeEEEEecCCcceeeeecC
Confidence 321 100 0010 012234567899999 5666555 556899999999999887653
No 154
>TIGR03866 PQQ_ABC_repeats PQQ-dependent catabolism-associated beta-propeller protein. Members of this protein family consist of seven repeats each of the YVTN family beta-propeller repeat (see TIGR02276). Members occur invariably as part of a transport operon that is associated with PQQ-dependent catabolism of alcohols such as phenylethanol.
Probab=99.90 E-value=3.7e-21 Score=177.47 Aligned_cols=272 Identities=11% Similarity=0.080 Sum_probs=183.8
Q ss_pred EeecCCccCCcceEEEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
...+.+|.. +.++.| +|+|+.+ ++++.++.|++||..+++. ...+..+. .+..++|+|+++
T Consensus 24 ~~~~~~~~~-~~~l~~---~~dg~~l~~~~~~~~~v~~~d~~~~~~-------------~~~~~~~~-~~~~~~~~~~g~ 85 (300)
T TIGR03866 24 TRTFPVGQR-PRGITL---SKDGKLLYVCASDSDTIQVIDLATGEV-------------IGTLPSGP-DPELFALHPNGK 85 (300)
T ss_pred EEEEECCCC-CCceEE---CCCCCEEEEEECCCCeEEEEECCCCcE-------------EEeccCCC-CccEEEECCCCC
Confidence 334444433 567777 9999876 5677889999999876532 33333333 356789999999
Q ss_pred EEEE-EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-cEEEEeCCCCCCCCCccccceeeecc
Q 010390 122 NILT-ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-SFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 122 ~l~s-~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
.+++ ++.|+.|++||+.+++.+..+.. ...+.+++|+|++ .+++++..++ .+.+||..+......
T Consensus 86 ~l~~~~~~~~~l~~~d~~~~~~~~~~~~-~~~~~~~~~~~dg-~~l~~~~~~~~~~~~~d~~~~~~~~~----------- 152 (300)
T TIGR03866 86 ILYIANEDDNLVTVIDIETRKVLAEIPV-GVEPEGMAVSPDG-KIVVNTSETTNMAHFIDTKTYEIVDN----------- 152 (300)
T ss_pred EEEEEcCCCCeEEEEECCCCeEEeEeeC-CCCcceEEECCCC-CEEEEEecCCCeEEEEeCCCCeEEEE-----------
Confidence 8765 45689999999999887777653 3357889999988 7788777765 567788765432110
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
. .....+.++.|++++..+++++..++.|.+||+++++.......... ...........
T Consensus 153 ----------------~-~~~~~~~~~~~s~dg~~l~~~~~~~~~v~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~ 211 (300)
T TIGR03866 153 ----------------V-LVDQRPRFAEFTADGKELWVSSEIGGTVSVIDVATRKVIKKITFEIP----GVHPEAVQPVG 211 (300)
T ss_pred ----------------E-EcCCCccEEEECCCCCEEEEEcCCCCEEEEEEcCcceeeeeeeeccc----ccccccCCccc
Confidence 0 11224567899999999887666799999999998765443211100 00001112456
Q ss_pred EEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCCc
Q 010390 280 LSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG-SSDGNAYVWQVNKPQADPI 357 (512)
Q Consensus 280 ~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~~ 357 (512)
++|+|++++++++ ..++.|.+||+.+.+ ...... ....+.+++|+|+|++|+++ ..++.|++||+.+.+.. .
T Consensus 212 i~~s~dg~~~~~~~~~~~~i~v~d~~~~~--~~~~~~---~~~~~~~~~~~~~g~~l~~~~~~~~~i~v~d~~~~~~~-~ 285 (300)
T TIGR03866 212 IKLTKDGKTAFVALGPANRVAVVDAKTYE--VLDYLL---VGQRVWQLAFTPDEKYLLTTNGVSNDVSVIDVAALKVI-K 285 (300)
T ss_pred eEECCCCCEEEEEcCCCCeEEEEECCCCc--EEEEEE---eCCCcceEEECCCCCEEEEEcCCCCeEEEEECCCCcEE-E
Confidence 8899999986554 456789999986532 222221 12346679999999999876 56899999999987653 4
Q ss_pred eeccccCCeEEEEeCC
Q 010390 358 KLKSHDGEVTAVNWCP 373 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~ 373 (512)
.+.. ....+.++++|
T Consensus 286 ~~~~-~~~~~~~~~~~ 300 (300)
T TIGR03866 286 SIKV-GRLPWGVVVRP 300 (300)
T ss_pred EEEc-ccccceeEeCC
Confidence 4443 35568888765
No 155
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=6.4e-22 Score=167.32 Aligned_cols=282 Identities=13% Similarity=0.235 Sum_probs=199.1
Q ss_pred cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--CCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--EDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
..+|++..+|.|+|||..++. .+..+++|...++.+.|.. ....+.+|+.||+|++||++.....
T Consensus 41 ~~vav~lSngsv~lyd~~tg~-------------~l~~fk~~~~~~N~vrf~~~ds~h~v~s~ssDG~Vr~wD~Rs~~e~ 107 (376)
T KOG1188|consen 41 TAVAVSLSNGSVRLYDKGTGQ-------------LLEEFKGPPATTNGVRFISCDSPHGVISCSSDGTVRLWDIRSQAES 107 (376)
T ss_pred eeEEEEecCCeEEEEeccchh-------------hhheecCCCCcccceEEecCCCCCeeEEeccCCeEEEEEeecchhh
Confidence 579999999999999998763 3778899999999999987 4567889999999999999887654
Q ss_pred ecc--cCcC-CCEEEEEeeCCCCCeEEEEeC----CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceec
Q 010390 144 GAL--MGHT-GSIKSLCSHPTNSDILVSGSR----DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR 216 (512)
Q Consensus 144 ~~~--~~h~-~~v~~l~~~~~~~~~l~s~~~----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (512)
..+ ..+. .+..+++..-.+ +++++|.. |-.|.+||++..+.... ...
T Consensus 108 a~~~~~~~~~~~f~~ld~nck~-~ii~~GtE~~~s~A~v~lwDvR~~qq~l~-------------------------~~~ 161 (376)
T KOG1188|consen 108 ARISWTQQSGTPFICLDLNCKK-NIIACGTELTRSDASVVLWDVRSEQQLLR-------------------------QLN 161 (376)
T ss_pred hheeccCCCCCcceEeeccCcC-CeEEeccccccCceEEEEEEeccccchhh-------------------------hhh
Confidence 443 3444 456677665444 67777753 67899999997654211 134
Q ss_pred ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecC
Q 010390 217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMD 295 (512)
Q Consensus 217 ~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~d 295 (512)
..|...|+++.|+|....++.+|+.||.|.+||+......-.. .....+...|.++.|..++ +.+.+-+..
T Consensus 162 eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~EeDaL--------~~viN~~sSI~~igw~~~~ykrI~clTH~ 233 (376)
T KOG1188|consen 162 ESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEEDAL--------LHVINHGSSIHLIGWLSKKYKRIMCLTHM 233 (376)
T ss_pred hhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcchhhH--------HHhhcccceeeeeeeecCCcceEEEEEcc
Confidence 5788999999999999999999999999999999865322111 1344556679999999877 458888899
Q ss_pred CeEEEEEcccCCCCceEeeee--------ceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCC---C--CCCCceecc
Q 010390 296 HRIYLYNVLQLDKGPIQHFSG--------CRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNK---P--QADPIKLKS 361 (512)
Q Consensus 296 g~i~i~d~~~~~~~~~~~~~~--------~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~---~--~~~~~~~~~ 361 (512)
+...+|+++............ .....+++..-...+....+. |+.-|...++-+.. + ......+.+
T Consensus 234 Etf~~~ele~~~~~~~~~~~~~~~~d~r~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g 313 (376)
T KOG1188|consen 234 ETFAIYELEDGSEETWLENPDVSADDLRKEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQG 313 (376)
T ss_pred CceeEEEccCCChhhcccCccchhhhHHhhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccC
Confidence 999999997755321111110 001122222222233444444 44356666665542 1 122344555
Q ss_pred -ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 362 -HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 362 -h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
|...|+++.|...+ ..+.|||.||.+.+|..+.
T Consensus 314 ~~~eiVR~i~~~~~~-~~l~TGGEDG~l~~Wk~~d 347 (376)
T KOG1188|consen 314 GHEEIVRDILFDVKN-DVLYTGGEDGLLQAWKVED 347 (376)
T ss_pred CcHHHHHHHhhhccc-ceeeccCCCceEEEEecCC
Confidence 77889999998877 8999999999999999644
No 156
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.90 E-value=1.9e-22 Score=183.62 Aligned_cols=130 Identities=18% Similarity=0.180 Sum_probs=104.1
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
.+.+|.+.|..+.|.+| +..+||||+.|..|+||.+..+..... ...-..+.+..-.|.++.|+|..+-|+
T Consensus 74 ~l~~H~d~VtDl~FspF--~D~LLAT~S~D~~VKiW~lp~g~~q~L-------Sape~~~g~~~~~vE~l~fHpTaDgil 144 (1012)
T KOG1445|consen 74 ILAAHGDQVTDLGFSPF--ADELLATCSRDEPVKIWKLPRGHSQKL-------SAPEIDVGGGNVIVECLRFHPTADGIL 144 (1012)
T ss_pred eeecccceeeccCcccc--chhhhhcccCCCeeEEEecCCCccccc-------CCcceeecCCceEEEEeecccCcCceE
Confidence 45679999999999655 456999999999999999874422100 011122333345788999999766677
Q ss_pred EEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCC
Q 010390 125 TASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKS 184 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 184 (512)
..+.-|+++|||+.+++.+..+.+|...|.++.|+.+| .+|++.+.|..|+|||.+..-
T Consensus 145 ~s~a~g~v~i~D~stqk~~~el~~h~d~vQSa~WseDG-~llatscKdkqirifDPRa~~ 203 (1012)
T KOG1445|consen 145 ASGAHGSVYITDISTQKTAVELSGHTDKVQSADWSEDG-KLLATSCKDKQIRIFDPRASM 203 (1012)
T ss_pred EeccCceEEEEEcccCceeecccCCchhhhccccccCC-ceEeeecCCcceEEeCCccCC
Confidence 66678999999999999999999999999999999998 999999999999999998643
No 157
>KOG2055 consensus WD40 repeat protein [General function prediction only]
Probab=99.90 E-value=7.2e-22 Score=173.35 Aligned_cols=252 Identities=16% Similarity=0.144 Sum_probs=196.3
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 185 (512)
.+.|+++.|+|....|++|+.|++++||.+... ..++.+.-...+|.+.+|.|+|...+++++....+..||+.+.+.
T Consensus 213 ~~~I~sv~FHp~~plllvaG~d~~lrifqvDGk~N~~lqS~~l~~fPi~~a~f~p~G~~~i~~s~rrky~ysyDle~ak~ 292 (514)
T KOG2055|consen 213 HGGITSVQFHPTAPLLLVAGLDGTLRIFQVDGKVNPKLQSIHLEKFPIQKAEFAPNGHSVIFTSGRRKYLYSYDLETAKV 292 (514)
T ss_pred cCCceEEEecCCCceEEEecCCCcEEEEEecCccChhheeeeeccCccceeeecCCCceEEEecccceEEEEeecccccc
Confidence 478999999999999999999999999988643 456666666789999999999955999999999999999987765
Q ss_pred CCCccccceeeecccccccccccccccceecccc-cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCc
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA-SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA 264 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~ 264 (512)
.+.... .++ ...+.....++++++++..| ..|.|.+....++..+...
T Consensus 293 ~k~~~~-------------------------~g~e~~~~e~FeVShd~~fia~~G-~~G~I~lLhakT~eli~s~----- 341 (514)
T KOG2055|consen 293 TKLKPP-------------------------YGVEEKSMERFEVSHDSNFIAIAG-NNGHIHLLHAKTKELITSF----- 341 (514)
T ss_pred ccccCC-------------------------CCcccchhheeEecCCCCeEEEcc-cCceEEeehhhhhhhhhee-----
Confidence 442211 111 23567778899999999977 7999999998888766433
Q ss_pred cccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 265 ESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
...+.|..++|+.+++.|++++.+|.|.+||++.. ..+..+.... ...-+.++.++++.+||+|+..|.|
T Consensus 342 -------KieG~v~~~~fsSdsk~l~~~~~~GeV~v~nl~~~--~~~~rf~D~G-~v~gts~~~S~ng~ylA~GS~~GiV 411 (514)
T KOG2055|consen 342 -------KIEGVVSDFTFSSDSKELLASGGTGEVYVWNLRQN--SCLHRFVDDG-SVHGTSLCISLNGSYLATGSDSGIV 411 (514)
T ss_pred -------eeccEEeeEEEecCCcEEEEEcCCceEEEEecCCc--ceEEEEeecC-ccceeeeeecCCCceEEeccCcceE
Confidence 23356899999999999999999999999999875 3333333221 1234568889999999999999999
Q ss_pred EEEecCCC-----CCCCceeccccCCeEEEEeCCCCCCeEEEEe--CCCcEEEEeCCCCccccc
Q 010390 345 YVWQVNKP-----QADPIKLKSHDGEVTAVNWCPNEAGKIVTSS--DDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 345 ~iw~~~~~-----~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~--~dg~i~vwd~~~~~~~~~ 401 (512)
.|||.++. ..++..+..-...|++++|++|. ++|+.+| .+..+++-.+.+...-..
T Consensus 412 NIYd~~s~~~s~~PkPik~~dNLtt~Itsl~Fn~d~-qiLAiaS~~~knalrLVHvPS~TVFsN 474 (514)
T KOG2055|consen 412 NIYDGNSCFASTNPKPIKTVDNLTTAITSLQFNHDA-QILAIASRVKKNALRLVHVPSCTVFSN 474 (514)
T ss_pred EEeccchhhccCCCCchhhhhhhheeeeeeeeCcch-hhhhhhhhccccceEEEeccceeeecc
Confidence 99997642 23345566667889999999999 8888777 567888888877665443
No 158
>KOG0270 consensus WD40 repeat-containing protein [Function unknown]
Probab=99.90 E-value=4.2e-22 Score=174.03 Aligned_cols=246 Identities=15% Similarity=0.270 Sum_probs=192.0
Q ss_pred EEEEEec-------CCCEEEEEeCCCcEEEEeCCCCee---------------------eecccCcCCCEEEEEeeCCCC
Q 010390 112 FDLCWIK-------EDTNILTASGDQTIKIWDAEKKKC---------------------TGALMGHTGSIKSLCSHPTNS 163 (512)
Q Consensus 112 ~~l~~s~-------~~~~l~s~~~dg~i~iwd~~~~~~---------------------~~~~~~h~~~v~~l~~~~~~~ 163 (512)
.|++|.. -|+++|.|+.|..|.|||+.-... -..-.+|+..|.+++|+..-.
T Consensus 177 LC~ewld~~~~~~~~gNyvAiGtmdp~IeIWDLDI~d~v~P~~~LGs~~sk~~~k~~k~~~~~~gHTdavl~Ls~n~~~~ 256 (463)
T KOG0270|consen 177 LCIEWLDHGSKSGGAGNYVAIGTMDPEIEIWDLDIVDAVLPCVTLGSKASKKKKKKGKRSNSASGHTDAVLALSWNRNFR 256 (463)
T ss_pred hhhhhhhcCCCCCCCcceEEEeccCceeEEeccccccccccceeechhhhhhhhhhcccccccccchHHHHHHHhccccc
Confidence 4566643 368999999999999999852110 011246999999999998888
Q ss_pred CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC
Q 010390 164 DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS 243 (512)
Q Consensus 164 ~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg 243 (512)
+.||+|+.|.+|++||+.++++.. .+..|...|.++.|+|....++.+|+.|+
T Consensus 257 nVLaSgsaD~TV~lWD~~~g~p~~---------------------------s~~~~~k~Vq~l~wh~~~p~~LLsGs~D~ 309 (463)
T KOG0270|consen 257 NVLASGSADKTVKLWDVDTGKPKS---------------------------SITHHGKKVQTLEWHPYEPSVLLSGSYDG 309 (463)
T ss_pred eeEEecCCCceEEEEEcCCCCcce---------------------------ehhhcCCceeEEEecCCCceEEEeccccc
Confidence 899999999999999999887654 44567889999999999988888899999
Q ss_pred eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceecee
Q 010390 244 IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESF 322 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 322 (512)
+|.+.|.+...... ......+.|..++|++... .++++..||+++-+|++... .++..+..|. ..
T Consensus 310 ~V~l~D~R~~~~s~-----------~~wk~~g~VEkv~w~~~se~~f~~~tddG~v~~~D~R~~~-~~vwt~~AHd--~~ 375 (463)
T KOG0270|consen 310 TVALKDCRDPSNSG-----------KEWKFDGEVEKVAWDPHSENSFFVSTDDGTVYYFDIRNPG-KPVWTLKAHD--DE 375 (463)
T ss_pred eEEeeeccCccccC-----------ceEEeccceEEEEecCCCceeEEEecCCceEEeeecCCCC-CceeEEEecc--CC
Confidence 99999999633221 2344457799999998654 67778899999999998864 6777777775 45
Q ss_pred EEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceecccc---CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 323 YVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKSHD---GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 323 ~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~---~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
|.+++++.. ..++++++.|+.|++|++...... ....|. +...|.++.|+-+..++.||..+.++|||+.+...
T Consensus 376 ISgl~~n~~~p~~l~t~s~d~~Vklw~~~~~~~~--~v~~~~~~~~rl~c~~~~~~~a~~la~GG~k~~~~vwd~~~~~~ 453 (463)
T KOG0270|consen 376 ISGLSVNIQTPGLLSTASTDKVVKLWKFDVDSPK--SVKEHSFKLGRLHCFALDPDVAFTLAFGGEKAVLRVWDIFTNSP 453 (463)
T ss_pred cceEEecCCCCcceeeccccceEEEEeecCCCCc--ccccccccccceeecccCCCcceEEEecCccceEEEeecccChh
Confidence 788888876 457889999999999999765442 222232 34677788898878999999999999999988765
Q ss_pred cc
Q 010390 399 SS 400 (512)
Q Consensus 399 ~~ 400 (512)
+.
T Consensus 454 V~ 455 (463)
T KOG0270|consen 454 VR 455 (463)
T ss_pred HH
Confidence 44
No 159
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.90 E-value=7.1e-22 Score=180.99 Aligned_cols=278 Identities=16% Similarity=0.215 Sum_probs=208.8
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
.|..|+| -|||..|+.+. +..+.|||.+.+. .+.++++|++.|++++|+.||+.+++|+.|..
T Consensus 14 ci~d~af---kPDGsqL~lAA-g~rlliyD~ndG~-------------llqtLKgHKDtVycVAys~dGkrFASG~aDK~ 76 (1081)
T KOG1538|consen 14 CINDIAF---KPDGTQLILAA-GSRLLVYDTSDGT-------------LLQPLKGHKDTVYCVAYAKDGKRFASGSADKS 76 (1081)
T ss_pred chheeEE---CCCCceEEEec-CCEEEEEeCCCcc-------------cccccccccceEEEEEEccCCceeccCCCcee
Confidence 6778888 99999777765 4479999998774 48899999999999999999999999999999
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
|.+|+..-...+ .+ .|.+.|.|+.|+|-. +.|++++.. ..-+|........+.
T Consensus 77 VI~W~~klEG~L-kY-SH~D~IQCMsFNP~~-h~LasCsLs-dFglWS~~qK~V~K~----------------------- 129 (1081)
T KOG1538|consen 77 VIIWTSKLEGIL-KY-SHNDAIQCMSFNPIT-HQLASCSLS-DFGLWSPEQKSVSKH----------------------- 129 (1081)
T ss_pred EEEeccccccee-ee-ccCCeeeEeecCchH-HHhhhcchh-hccccChhhhhHHhh-----------------------
Confidence 999985432222 22 489999999999987 889998874 577888765433221
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-----
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG----- 286 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~----- 286 (512)
.....+.+.+|..||.+++. |-.||+|.+-+.......... ...+...+|.+++|+|..
T Consensus 130 ------kss~R~~~CsWtnDGqylal-G~~nGTIsiRNk~gEek~~I~---------Rpgg~Nspiwsi~~~p~sg~G~~ 193 (1081)
T KOG1538|consen 130 ------KSSSRIICCSWTNDGQYLAL-GMFNGTISIRNKNGEEKVKIE---------RPGGSNSPIWSICWNPSSGEGRN 193 (1081)
T ss_pred ------hhheeEEEeeecCCCcEEEE-eccCceEEeecCCCCcceEEe---------CCCCCCCCceEEEecCCCCCCcc
Confidence 12346889999999999988 668999999765443332221 234456789999999863
Q ss_pred CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCe
Q 010390 287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEV 366 (512)
Q Consensus 287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v 366 (512)
..+++.....++.+|.+.......-+.+. -...|+.+.++|.+++.|+.|+.+++|.-+.-. +.+....+.+|
T Consensus 194 di~aV~DW~qTLSFy~LsG~~Igk~r~L~-----FdP~CisYf~NGEy~LiGGsdk~L~~fTR~Gvr--LGTvg~~D~WI 266 (1081)
T KOG1538|consen 194 DILAVADWGQTLSFYQLSGKQIGKDRALN-----FDPCCISYFTNGEYILLGGSDKQLSLFTRDGVR--LGTVGEQDSWI 266 (1081)
T ss_pred ceEEEEeccceeEEEEecceeecccccCC-----CCchhheeccCCcEEEEccCCCceEEEeecCeE--EeeccccceeE
Confidence 46777777777777776432211111111 123468888999999999999999999654422 34555567899
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 367 TAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+.++..|++ +.++.|+.||+|-.|++....
T Consensus 267 WtV~~~PNs-Q~v~~GCqDGTiACyNl~fST 296 (1081)
T KOG1538|consen 267 WTVQAKPNS-QYVVVGCQDGTIACYNLIFST 296 (1081)
T ss_pred EEEEEccCC-ceEEEEEccCeeehhhhHHhH
Confidence 999999999 899999999999999976543
No 160
>KOG0302 consensus Ribosome Assembly protein [General function prediction only]
Probab=99.89 E-value=7.2e-22 Score=168.99 Aligned_cols=231 Identities=15% Similarity=0.199 Sum_probs=174.8
Q ss_pred ccCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390 146 LMGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT 224 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (512)
..+|.+.++.+.-.+.+ ..+.++-+..|.|.||++...-..... . ...........+..+.+|...=.
T Consensus 147 ~i~h~g~~NRvr~~~~~~~~~~aswse~G~V~Vw~l~~~l~~l~~--~---------~~~~~~s~~~Pl~t~~ghk~EGy 215 (440)
T KOG0302|consen 147 SIPHYGGINRVRVSRLGNEVLCASWSENGRVQVWDLAPHLNALSE--P---------GLEVKDSEFRPLFTFNGHKGEGY 215 (440)
T ss_pred ccccccccceeeecccCCcceeeeecccCcEEEEEchhhhhhhcC--c---------cccccccccCceEEecccCccce
Confidence 34588888888887764 345666678899999998643211100 0 00001134455667888999999
Q ss_pred EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEc
Q 010390 225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNV 303 (512)
Q Consensus 225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~ 303 (512)
.++|+|-..-.+.+|.--+.|++|...++.-..-.. .+.+|...|..++|+|.. ..|++|+.||+|+|||+
T Consensus 216 ~LdWSp~~~g~LlsGDc~~~I~lw~~~~g~W~vd~~--------Pf~gH~~SVEDLqWSptE~~vfaScS~DgsIrIWDi 287 (440)
T KOG0302|consen 216 GLDWSPIKTGRLLSGDCVKGIHLWEPSTGSWKVDQR--------PFTGHTKSVEDLQWSPTEDGVFASCSCDGSIRIWDI 287 (440)
T ss_pred eeecccccccccccCccccceEeeeeccCceeecCc--------cccccccchhhhccCCccCceEEeeecCceEEEEEe
Confidence 999999555544446566789999988865443221 466799999999999965 47889999999999999
Q ss_pred ccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC--CCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390 304 LQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ--ADPIKLKSHDGEVTAVNWCPNEAGKIVT 381 (512)
Q Consensus 304 ~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~--~~~~~~~~h~~~v~~v~~~~~~~~~l~s 381 (512)
+............|. .-|..+.|+.+..+||+|+.||+++|||++..+ .++..+..|..+|++|.|+|.....|++
T Consensus 288 Rs~~~~~~~~~kAh~--sDVNVISWnr~~~lLasG~DdGt~~iwDLR~~~~~~pVA~fk~Hk~pItsieW~p~e~s~iaa 365 (440)
T KOG0302|consen 288 RSGPKKAAVSTKAHN--SDVNVISWNRREPLLASGGDDGTLSIWDLRQFKSGQPVATFKYHKAPITSIEWHPHEDSVIAA 365 (440)
T ss_pred cCCCccceeEeeccC--CceeeEEccCCcceeeecCCCceEEEEEhhhccCCCcceeEEeccCCeeEEEeccccCceEEe
Confidence 987665555555554 457779999998899999999999999998643 4567899999999999999988789999
Q ss_pred EeCCCcEEEEeCCCCc
Q 010390 382 SSDDYTVRLWSLENSR 397 (512)
Q Consensus 382 ~~~dg~i~vwd~~~~~ 397 (512)
+|.|..|.+||+.-..
T Consensus 366 sg~D~QitiWDlsvE~ 381 (440)
T KOG0302|consen 366 SGEDNQITIWDLSVEA 381 (440)
T ss_pred ccCCCcEEEEEeeccC
Confidence 9999999999997544
No 161
>KOG2048 consensus WD40 repeat protein [General function prediction only]
Probab=99.89 E-value=1.4e-20 Score=173.09 Aligned_cols=251 Identities=18% Similarity=0.230 Sum_probs=198.3
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee-eecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC-TGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
--..+|.+++|+.+.+.||.+-.||.|.||++..+=. ...+.++ ...|.+++|++ + ..|++.+.+|.|.-||+.+.
T Consensus 23 ~~Ps~I~slA~s~kS~~lAvsRt~g~IEiwN~~~~w~~~~vi~g~~drsIE~L~W~e-~-~RLFS~g~sg~i~EwDl~~l 100 (691)
T KOG2048|consen 23 YKPSEIVSLAYSHKSNQLAVSRTDGNIEIWNLSNNWFLEPVIHGPEDRSIESLAWAE-G-GRLFSSGLSGSITEWDLHTL 100 (691)
T ss_pred eeccceEEEEEeccCCceeeeccCCcEEEEccCCCceeeEEEecCCCCceeeEEEcc-C-CeEEeecCCceEEEEecccC
Confidence 3457999999999999999999999999999987632 3344444 46899999995 3 67899999999999999876
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
+... ......+.|++++.+|.+..+++ |++||.+..++...+......
T Consensus 101 k~~~---------------------------~~d~~gg~IWsiai~p~~~~l~I-gcddGvl~~~s~~p~~I~~~r---- 148 (691)
T KOG2048|consen 101 KQKY---------------------------NIDSNGGAIWSIAINPENTILAI-GCDDGVLYDFSIGPDKITYKR---- 148 (691)
T ss_pred ceeE---------------------------EecCCCcceeEEEeCCccceEEe-ecCCceEEEEecCCceEEEEe----
Confidence 5443 33455678999999999988887 668998888888877766554
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee--e-ce-eceeEEEEEECCCCCEEEEec
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS--G-CR-IESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~--~-~~-~~~~~~~~~~s~~~~~l~~g~ 339 (512)
.+....+.|.++.|++++..++.|+.||.|++||........+.... + .. ....+.++.|- ....|++|.
T Consensus 149 -----~l~rq~sRvLslsw~~~~~~i~~Gs~Dg~Iriwd~~~~~t~~~~~~~~d~l~k~~~~iVWSv~~L-rd~tI~sgD 222 (691)
T KOG2048|consen 149 -----SLMRQKSRVLSLSWNPTGTKIAGGSIDGVIRIWDVKSGQTLHIITMQLDRLSKREPTIVWSVLFL-RDSTIASGD 222 (691)
T ss_pred -----ecccccceEEEEEecCCccEEEecccCceEEEEEcCCCceEEEeeecccccccCCceEEEEEEEe-ecCcEEEec
Confidence 23344577999999999999999999999999998765443322211 1 11 23445666665 445789999
Q ss_pred CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
.-|+|.+||...+.. ......|.+.|.+++..+++ .+++++|.|+.|..+...+...
T Consensus 223 S~G~V~FWd~~~gTL-iqS~~~h~adVl~Lav~~~~-d~vfsaGvd~~ii~~~~~~~~~ 279 (691)
T KOG2048|consen 223 SAGTVTFWDSIFGTL-IQSHSCHDADVLALAVADNE-DRVFSAGVDPKIIQYSLTTNKS 279 (691)
T ss_pred CCceEEEEcccCcch-hhhhhhhhcceeEEEEcCCC-CeEEEccCCCceEEEEecCCcc
Confidence 999999999998876 56788899999999999998 8999999999999998877743
No 162
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.89 E-value=8.8e-22 Score=169.44 Aligned_cols=214 Identities=18% Similarity=0.264 Sum_probs=168.2
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNI 123 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l 123 (512)
...||+++|..++||+| +.+.||+|+.|.+|.||++....... .-..++..+.+|...|-.++|+|. .+.|
T Consensus 76 ~v~GHt~~vLDi~w~Pf--nD~vIASgSeD~~v~vW~IPe~~l~~------~ltepvv~L~gH~rrVg~V~wHPtA~NVL 147 (472)
T KOG0303|consen 76 LVCGHTAPVLDIDWCPF--NDCVIASGSEDTKVMVWQIPENGLTR------DLTEPVVELYGHQRRVGLVQWHPTAPNVL 147 (472)
T ss_pred CccCccccccccccCcc--CCceeecCCCCceEEEEECCCccccc------CcccceEEEeecceeEEEEeecccchhhH
Confidence 45789999999999866 66899999999999999987654322 123568889999999999999994 4678
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++++.|.+|.|||+.+|+.+.++. |.+.|++++|+-+| .+|++++.|..|+|||.++++.....
T Consensus 148 lsag~Dn~v~iWnv~tgeali~l~-hpd~i~S~sfn~dG-s~l~TtckDKkvRv~dpr~~~~v~e~-------------- 211 (472)
T KOG0303|consen 148 LSAGSDNTVSIWNVGTGEALITLD-HPDMVYSMSFNRDG-SLLCTTCKDKKVRVIDPRRGTVVSEG-------------- 211 (472)
T ss_pred hhccCCceEEEEeccCCceeeecC-CCCeEEEEEeccCC-ceeeeecccceeEEEcCCCCcEeeec--------------
Confidence 899999999999999999888888 99999999999988 99999999999999999988755422
Q ss_pred cccccccccceeccccc-ccEEEEEEeecCCEEEEEee---cCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 204 AHLLSQSKRVSRRKAAS-MSITSVLYLKDEVSIATASA---VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~-~~v~~~~~~~~~~~l~~~g~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
.+|. .....+.|..++. ++++|. .+..+-+||..+....... .......+|.-
T Consensus 212 -------------~~heG~k~~Raifl~~g~-i~tTGfsr~seRq~aLwdp~nl~eP~~~---------~elDtSnGvl~ 268 (472)
T KOG0303|consen 212 -------------VAHEGAKPARAIFLASGK-IFTTGFSRMSERQIALWDPNNLEEPIAL---------QELDTSNGVLL 268 (472)
T ss_pred -------------ccccCCCcceeEEeccCc-eeeeccccccccceeccCcccccCccee---------EEeccCCceEE
Confidence 1222 2345667777887 666663 3678999998877655322 22233345666
Q ss_pred EEeCCCCCEEEEE-ecCCeEEEEEccc
Q 010390 280 LSQDSNGVFLTAS-CMDHRIYLYNVLQ 305 (512)
Q Consensus 280 ~~~~~~~~~l~~~-~~dg~i~i~d~~~ 305 (512)
--|++|...++.+ -.|+.|+.|.+..
T Consensus 269 PFyD~dt~ivYl~GKGD~~IRYyEit~ 295 (472)
T KOG0303|consen 269 PFYDPDTSIVYLCGKGDSSIRYFEITN 295 (472)
T ss_pred eeecCCCCEEEEEecCCcceEEEEecC
Confidence 6678888877654 4899999999865
No 163
>KOG0307 consensus Vesicle coat complex COPII, subunit SEC31 [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.88 E-value=7.5e-22 Score=192.04 Aligned_cols=255 Identities=23% Similarity=0.325 Sum_probs=191.9
Q ss_pred cceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC-CEEEEEeCCC
Q 010390 53 PLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED-TNILTASGDQ 130 (512)
Q Consensus 53 v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg 130 (512)
-+.++|+.+-.+. .+||.|..||.|.+||...-. .+.+...+.+...|++.|..+.|++.. ..||+|+.||
T Consensus 67 F~kL~W~~~g~~~~GlIaGG~edG~I~ly~p~~~~-------~~~~~~~la~~~~h~G~V~gLDfN~~q~nlLASGa~~g 139 (1049)
T KOG0307|consen 67 FNKLAWGSYGSHSHGLIAGGLEDGNIVLYDPASII-------ANASEEVLATKSKHTGPVLGLDFNPFQGNLLASGADDG 139 (1049)
T ss_pred ceeeeecccCCCccceeeccccCCceEEecchhhc-------cCcchHHHhhhcccCCceeeeeccccCCceeeccCCCC
Confidence 3577774432211 259999999999999986531 113345688889999999999999955 4999999999
Q ss_pred cEEEEeCCCCeeeecc--cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 131 TIKIWDAEKKKCTGAL--MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
.|.|||+...+..... ....+.|.+++|+..-.++|++++.+|.+.|||++..+.+.....
T Consensus 140 eI~iWDlnn~~tP~~~~~~~~~~eI~~lsWNrkvqhILAS~s~sg~~~iWDlr~~~pii~ls~----------------- 202 (1049)
T KOG0307|consen 140 EILIWDLNKPETPFTPGSQAPPSEIKCLSWNRKVSHILASGSPSGRAVIWDLRKKKPIIKLSD----------------- 202 (1049)
T ss_pred cEEEeccCCcCCCCCCCCCCCcccceEeccchhhhHHhhccCCCCCceeccccCCCccccccc-----------------
Confidence 9999999886554444 224578999999988778999999999999999997754332211
Q ss_pred ccccceecccccccEEEEEEeecCCE-EEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVS-IATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~-l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
......+..+.|+|+... ++++..+|+ .|.+||+|....... .++.|..+|.+|.|++.
T Consensus 203 --------~~~~~~~S~l~WhP~~aTql~~As~dd~~PviqlWDlR~assP~k----------~~~~H~~GilslsWc~~ 264 (1049)
T KOG0307|consen 203 --------TPGRMHCSVLAWHPDHATQLLVASGDDSAPVIQLWDLRFASSPLK----------ILEGHQRGILSLSWCPQ 264 (1049)
T ss_pred --------CCCccceeeeeeCCCCceeeeeecCCCCCceeEeecccccCCchh----------hhcccccceeeeccCCC
Confidence 111245789999998765 444443333 699999997765554 57889999999999986
Q ss_pred C-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCC
Q 010390 286 G-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 286 ~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~ 353 (512)
+ .+|++++.|+.|.+|+.++++ .+..+.. ...++..+.|+|... .+++++-||.|.||.+....
T Consensus 265 D~~lllSsgkD~~ii~wN~~tgE--vl~~~p~--~~nW~fdv~w~pr~P~~~A~asfdgkI~I~sl~~~~ 330 (1049)
T KOG0307|consen 265 DPRLLLSSGKDNRIICWNPNTGE--VLGELPA--QGNWCFDVQWCPRNPSVMAAASFDGKISIYSLQGTD 330 (1049)
T ss_pred CchhhhcccCCCCeeEecCCCce--EeeecCC--CCcceeeeeecCCCcchhhhheeccceeeeeeecCC
Confidence 6 889999999999999987632 3333333 346788899999866 77889999999999987654
No 164
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.88 E-value=9.2e-22 Score=177.09 Aligned_cols=276 Identities=18% Similarity=0.257 Sum_probs=197.4
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.+-+.+..|.+-|+++.| +|....|++++.||.|.+|+++.... .......++.+|.+|.++|.|+++.+++
T Consensus 285 ~ik~tl~s~~d~ir~l~~---~~sep~lit~sed~~lk~WnLqk~~~-----s~~~~~epi~tfraH~gPVl~v~v~~n~ 356 (577)
T KOG0642|consen 285 NIKFTLRSHDDCIRALAF---HPSEPVLITASEDGTLKLWNLQKAKK-----SAEKDVEPILTFRAHEGPVLCVVVPSNG 356 (577)
T ss_pred ceeeeeecchhhhhhhhc---CCCCCeEEEeccccchhhhhhcccCC-----ccccceeeeEEEecccCceEEEEecCCc
Confidence 344578889999999999 88889999999999999999954221 1224457799999999999999999999
Q ss_pred CEEEEEeCCCcEEEEeCCCC----------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 121 TNILTASGDQTIKIWDAEKK----------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
+++++|+.||+|+.|++... .....+.||.+.|+.+++++.. ..|++++.||+++.|+........ +
T Consensus 357 ~~~ysgg~Dg~I~~w~~p~n~dp~ds~dp~vl~~~l~Ghtdavw~l~~s~~~-~~Llscs~DgTvr~w~~~~~~~~~-f- 433 (577)
T KOG0642|consen 357 EHCYSGGIDGTIRCWNLPPNQDPDDSYDPSVLSGTLLGHTDAVWLLALSSTK-DRLLSCSSDGTVRLWEPTEESPCT-F- 433 (577)
T ss_pred eEEEeeccCceeeeeccCCCCCcccccCcchhccceeccccceeeeeecccc-cceeeecCCceEEeeccCCcCccc-c-
Confidence 99999999999999966421 2345678999999999999977 789999999999999987554310 0
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
......+...++.+-.....+.++ +..+..+++........
T Consensus 434 ------------------------~~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~------------ 474 (577)
T KOG0642|consen 434 ------------------------GEPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSD------------ 474 (577)
T ss_pred ------------------------CCccccCCcceEeeccchhHhhhh---hcccccccchhhhhhhh------------
Confidence 001112233444443333222221 23333333332221110
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
+ .++-.+.+...+.+ ..+..+.+.|.+.+.+++..|+.|+++|..
T Consensus 475 ---------~-------~~~~s~~~~~~~~~-------------------~~in~vVs~~~~~~~~~~hed~~Ir~~dn~ 519 (577)
T KOG0642|consen 475 ---------L-------LIFESSASPGPRRY-------------------PQINKVVSHPTADITFTAHEDRSIRFFDNK 519 (577)
T ss_pred ---------e-------eeccccCCCccccc-------------------CccceEEecCCCCeeEecccCCceeccccc
Confidence 0 01111111111111 123346777889999999999999999999
Q ss_pred CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 351 KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 351 ~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
++.. +.....|...++++++.|+| -+|++++.||.+++|.+....|.....
T Consensus 520 ~~~~-l~s~~a~~~svtslai~~ng-~~l~s~s~d~sv~l~kld~k~~~~es~ 570 (577)
T KOG0642|consen 520 TGKI-LHSMVAHKDSVTSLAIDPNG-PYLMSGSHDGSVRLWKLDVKTCVLEST 570 (577)
T ss_pred cccc-chheeeccceecceeecCCC-ceEEeecCCceeehhhccchheeeccc
Confidence 8876 56778899999999999999 799999999999999999888876533
No 165
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.88 E-value=9.6e-21 Score=156.55 Aligned_cols=288 Identities=14% Similarity=0.196 Sum_probs=199.5
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCC-------CcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDED-------GYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCW 116 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~d-------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~ 116 (512)
.+..|.+.|..++-+++ |.++|+++..+ ..+.||.+........ ......+..+. .+-+.|.|+.|
T Consensus 58 vf~h~agEvw~las~P~--d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S~----~~tlE~v~~Ldteavg~i~cvew 131 (370)
T KOG1007|consen 58 VFFHHAGEVWDLASSPF--DQRILATVYNDTSDSGVLTGAAIWQIPEPLGQSN----SSTLECVASLDTEAVGKINCVEW 131 (370)
T ss_pred hhhcCCcceehhhcCCC--CCceEEEEEeccCCCcceeeEEEEecccccCccc----cchhhHhhcCCHHHhCceeeEEE
Confidence 34557899999999433 55688887542 2478999865432100 01122344443 45679999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCCee-eecc-----cCcCCCEEEEEeeC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKKKC-TGAL-----MGHTGSIKSLCSHP-TNSDILVSGSRDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~~~-~~~~-----~~h~~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 189 (512)
.|++..|++-. |..|.+|++..+.. +..+ ..+....++-+|+| .+.+.+++. .|++++.||+++......
T Consensus 132 ~Pns~klasm~-dn~i~l~~l~ess~~vaev~ss~s~e~~~~ftsg~WspHHdgnqv~tt-~d~tl~~~D~RT~~~~~s- 208 (370)
T KOG1007|consen 132 EPNSDKLASMD-DNNIVLWSLDESSKIVAEVLSSESAEMRHSFTSGAWSPHHDGNQVATT-SDSTLQFWDLRTMKKNNS- 208 (370)
T ss_pred cCCCCeeEEec-cCceEEEEcccCcchheeecccccccccceecccccCCCCccceEEEe-CCCcEEEEEccchhhhcc-
Confidence 99999999775 88899999988755 3332 22556678889999 333566654 578999999997654332
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
...+|...|..+.|+|+...+++++++||.|++||++..+.... .
T Consensus 209 -------------------------I~dAHgq~vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~----------e 253 (370)
T KOG1007|consen 209 -------------------------IEDAHGQRVRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQ----------E 253 (370)
T ss_pred -------------------------hhhhhcceeeeccCCCCceEEEEEcCCCccEEEEeccCCCcccc----------c
Confidence 33467778999999999999998888999999999998776654 6
Q ss_pred ccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 270 KETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
+..|.+.|.++.|+|. .+++++++.|..|.+|........+...+.....+ .++. .+ .-.++ -
T Consensus 254 l~~HsHWvW~VRfn~~hdqLiLs~~SDs~V~Lsca~svSSE~qi~~~~dese--------~e~~-----ds-eer~k--p 317 (370)
T KOG1007|consen 254 LPGHSHWVWAVRFNPEHDQLILSGGSDSAVNLSCASSVSSEQQIEFEDDESE--------SEDE-----DS-EERVK--P 317 (370)
T ss_pred cCCCceEEEEEEecCccceEEEecCCCceeEEEecccccccccccccccccc--------Ccch-----hh-HHhcc--c
Confidence 7888999999999995 45778999999999998754332221111100000 0000 00 01111 1
Q ss_pred cCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 349 VNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+..+ .+.++..|++.|++++|+.-.+-++|+-+.||.+.|=.+.
T Consensus 318 L~dg--~l~tydehEDSVY~~aWSsadPWiFASLSYDGRviIs~V~ 361 (370)
T KOG1007|consen 318 LQDG--QLETYDEHEDSVYALAWSSADPWIFASLSYDGRVIISSVP 361 (370)
T ss_pred cccc--ccccccccccceEEEeeccCCCeeEEEeccCceEEeecCC
Confidence 2222 2357888999999999999888999999999999886664
No 166
>KOG0321 consensus WD40 repeat-containing protein L2DTL [Function unknown]
Probab=99.88 E-value=6.6e-21 Score=173.85 Aligned_cols=261 Identities=13% Similarity=0.213 Sum_probs=181.4
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-CCEEE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-DTNIL 124 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-~~~l~ 124 (512)
+.-|.+.|+.+.| -|....|++++.|.++++||++..... -...+.+|.+.|.+++|.|. ...++
T Consensus 96 ~~aH~nAifDl~w---apge~~lVsasGDsT~r~Wdvk~s~l~-----------G~~~~~GH~~SvkS~cf~~~n~~vF~ 161 (720)
T KOG0321|consen 96 PLAHKNAIFDLKW---APGESLLVSASGDSTIRPWDVKTSRLV-----------GGRLNLGHTGSVKSECFMPTNPAVFC 161 (720)
T ss_pred cccccceeEeecc---CCCceeEEEccCCceeeeeeeccceee-----------cceeecccccccchhhhccCCCccee
Confidence 4459999999999 776668999999999999999876431 13347899999999999994 55677
Q ss_pred EEeCCCcEEEEeCCCCe---------------------------eeecccCcCCCEEE---EEeeCCCCCeEEEEeC-CC
Q 010390 125 TASGDQTIKIWDAEKKK---------------------------CTGALMGHTGSIKS---LCSHPTNSDILVSGSR-DG 173 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~---------------------------~~~~~~~h~~~v~~---l~~~~~~~~~l~s~~~-dg 173 (512)
+|+.||.|.|||+.-.. .+..-..+...|.+ +.+..|+ ..||+++. |+
T Consensus 162 tGgRDg~illWD~R~n~~d~~e~~~~~~~~~~n~~ptpskp~~kr~~k~kA~s~ti~ssvTvv~fkDe-~tlaSaga~D~ 240 (720)
T KOG0321|consen 162 TGGRDGEILLWDCRCNGVDALEEFDNRIYGRHNTAPTPSKPLKKRIRKWKAASNTIFSSVTVVLFKDE-STLASAGAADS 240 (720)
T ss_pred eccCCCcEEEEEEeccchhhHHHHhhhhhccccCCCCCCchhhccccccccccCceeeeeEEEEEecc-ceeeeccCCCc
Confidence 99999999999985321 01111234444554 4555666 78888887 99
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc---cccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA---SMSITSVLYLKDEVSIATASAVNSIVKFWDT 250 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~ 250 (512)
.|+|||++........... ....+..+ ...+.++.....|.++++.+ .|+.|++|++
T Consensus 241 ~iKVWDLRk~~~~~r~ep~-------------------~~~~~~t~skrs~G~~nL~lDssGt~L~AsC-tD~sIy~ynm 300 (720)
T KOG0321|consen 241 TIKVWDLRKNYTAYRQEPR-------------------GSDKYPTHSKRSVGQVNLILDSSGTYLFASC-TDNSIYFYNM 300 (720)
T ss_pred ceEEEeecccccccccCCC-------------------cccCccCcccceeeeEEEEecCCCCeEEEEe-cCCcEEEEec
Confidence 9999999976654322110 01111122 34677888888899999877 5999999999
Q ss_pred cCccceecccCCCccccccccccc--cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE
Q 010390 251 RNLKAQITQAWPHAESSSAKETRL--HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI 328 (512)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~--~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~ 328 (512)
.......... +.++. ..-..-..+|++.++++|+.|...++|.+...+. ....+.+|..+ +++++|
T Consensus 301 ~s~s~sP~~~---------~sg~~~~sf~vks~lSpd~~~l~SgSsd~~ayiw~vs~~e~-~~~~l~Ght~e--Vt~V~w 368 (720)
T KOG0321|consen 301 RSLSISPVAE---------FSGKLNSSFYVKSELSPDDCSLLSGSSDEQAYIWVVSSPEA-PPALLLGHTRE--VTTVRW 368 (720)
T ss_pred cccCcCchhh---------ccCcccceeeeeeecCCCCceEeccCCCcceeeeeecCccC-ChhhhhCcceE--EEEEee
Confidence 9765433221 11111 1122234689999999999999999999977543 34445566544 556677
Q ss_pred CCC-CCEEEEecCCCCEEEEecCCCC
Q 010390 329 CPN-ASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 329 s~~-~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
.|. -.-++++++|..++||++..+-
T Consensus 369 ~pS~~t~v~TcSdD~~~kiW~l~~~l 394 (720)
T KOG0321|consen 369 LPSATTPVATCSDDFRVKIWRLSNGL 394 (720)
T ss_pred ccccCCCceeeccCcceEEEeccCch
Confidence 664 2335666999999999996543
No 167
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.88 E-value=1.3e-21 Score=172.95 Aligned_cols=314 Identities=19% Similarity=0.266 Sum_probs=240.8
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK- 118 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~- 118 (512)
-.+...+.+|.+.|..|.| +..|..|++|+.|..|.+||.....+. +.-..+|...|....|.|
T Consensus 132 ~~l~~kL~~H~GcVntV~F---N~~Gd~l~SgSDD~~vv~WdW~~~~~~------------l~f~SGH~~NvfQaKFiP~ 196 (559)
T KOG1334|consen 132 LRLQKKLNKHKGCVNTVHF---NQRGDVLASGSDDLQVVVWDWVSGSPK------------LSFESGHCNNVFQAKFIPF 196 (559)
T ss_pred hhhhhcccCCCCccceeee---cccCceeeccCccceEEeehhhccCcc------------cccccccccchhhhhccCC
Confidence 3556678899999999999 899999999999999999999876442 333468999999999998
Q ss_pred -CCCEEEEEeCCCcEEEEeCCC-Cee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 119 -EDTNILTASGDQTIKIWDAEK-KKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 119 -~~~~l~s~~~dg~i~iwd~~~-~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+.+.|++++.||.|++=.+.. +.+ ...+..|.++|..++.-|..+..|.+++.|+.+.-+|++.........
T Consensus 197 s~d~ti~~~s~dgqvr~s~i~~t~~~e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~~~~---- 272 (559)
T KOG1334|consen 197 SGDRTIVTSSRDGQVRVSEILETGYVENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAEKFV---- 272 (559)
T ss_pred CCCcCceeccccCceeeeeeccccceecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccceee----
Confidence 567899999999999877543 322 344567999999999999999999999999999999998765433221
Q ss_pred eeecccccccccccccccceeccccc---ccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee-----cccCCCccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAAS---MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI-----TQAWPHAES 266 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~ 266 (512)
....+. -....++.+|...+.+++|+.|-.+++||.+...... ....++.
T Consensus 273 --------------------cr~~~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~h-- 330 (559)
T KOG1334|consen 273 --------------------CREADEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHH-- 330 (559)
T ss_pred --------------------eeccCCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCcc--
Confidence 111111 2578889999888777677789999999998654431 1112221
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCC----------CceE-eeeeceeceeEEEEE-ECCCCCE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDK----------GPIQ-HFSGCRIESFYVKSE-ICPNASH 334 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~----------~~~~-~~~~~~~~~~~~~~~-~s~~~~~ 334 (512)
........|++++++.++.-|+++..|-.|+++.-..... ..+. .+.+|.....|-.+. |-|...|
T Consensus 331 --l~~d~~v~ITgl~Ysh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrsEy 408 (559)
T KOG1334|consen 331 --LVEDDPVNITGLVYSHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRSEY 408 (559)
T ss_pred --ccccCcccceeEEecCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCccce
Confidence 2224455699999999888888888999999996433222 1222 377887777776665 5688999
Q ss_pred EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
+++|+.-|.|.||+-.+++. +..+.+-..-|+||.-+|.- -+||++|-|..|+||...+.+.
T Consensus 409 VvSGSDCGhIFiW~K~t~ei-i~~MegDr~VVNCLEpHP~~-PvLAsSGid~DVKIWTP~~~er 470 (559)
T KOG1334|consen 409 VVSGSDCGHIFIWDKKTGEI-IRFMEGDRHVVNCLEPHPHL-PVLASSGIDHDVKIWTPLTAER 470 (559)
T ss_pred EEecCccceEEEEecchhHH-HHHhhcccceEeccCCCCCC-chhhccCCccceeeecCCcccc
Confidence 99999999999999988776 45666666699999999988 5999999999999999865543
No 168
>KOG4378 consensus Nuclear protein COP1 [Signal transduction mechanisms]
Probab=99.88 E-value=4.3e-21 Score=169.94 Aligned_cols=224 Identities=18% Similarity=0.239 Sum_probs=182.9
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
.-+||++.. ...|+++|+..+.|+|||++... ..+.+++|+..|+++.++....|||+++..|.
T Consensus 81 ~~~Cv~~~s---~S~y~~sgG~~~~Vkiwdl~~kl-------------~hr~lkdh~stvt~v~YN~~DeyiAsvs~gGd 144 (673)
T KOG4378|consen 81 NAFCVACAS---QSLYEISGGQSGCVKIWDLRAKL-------------IHRFLKDHQSTVTYVDYNNTDEYIASVSDGGD 144 (673)
T ss_pred hHHHHhhhh---cceeeeccCcCceeeehhhHHHH-------------HhhhccCCcceeEEEEecCCcceeEEeccCCc
Confidence 456777743 34899999999999999997543 36778999999999999999999999999999
Q ss_pred EEEEeCCCCeeeecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (512)
|.|..+.++.....|... ...|.-+.|++....+|.+++.+|.|.+||+.......
T Consensus 145 iiih~~~t~~~tt~f~~~sgqsvRll~ys~skr~lL~~asd~G~VtlwDv~g~sp~~----------------------- 201 (673)
T KOG4378|consen 145 IIIHGTKTKQKTTTFTIDSGQSVRLLRYSPSKRFLLSIASDKGAVTLWDVQGMSPIF----------------------- 201 (673)
T ss_pred EEEEecccCccccceecCCCCeEEEeecccccceeeEeeccCCeEEEEeccCCCccc-----------------------
Confidence 999999999887777644 34566899999887899999999999999998654332
Q ss_pred ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE
Q 010390 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290 (512)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (512)
.....|..+...|+|+|....|+++-+.|..|.+||++....... .....+...++|.++|.+|+
T Consensus 202 ---~~~~~HsAP~~gicfspsne~l~vsVG~Dkki~~yD~~s~~s~~~------------l~y~~Plstvaf~~~G~~L~ 266 (673)
T KOG4378|consen 202 ---HASEAHSAPCRGICFSPSNEALLVSVGYDKKINIYDIRSQASTDR------------LTYSHPLSTVAFSECGTYLC 266 (673)
T ss_pred ---chhhhccCCcCcceecCCccceEEEecccceEEEeecccccccce------------eeecCCcceeeecCCceEEE
Confidence 234578889999999998888777777899999999997655432 33446789999999999999
Q ss_pred EEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 291 ASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 291 ~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
.|...|.|..||++.. ..++.....|... +++++|-+..
T Consensus 267 aG~s~G~~i~YD~R~~-k~Pv~v~sah~~s--Vt~vafq~s~ 305 (673)
T KOG4378|consen 267 AGNSKGELIAYDMRST-KAPVAVRSAHDAS--VTRVAFQPSP 305 (673)
T ss_pred eecCCceEEEEecccC-CCCceEeeecccc--eeEEEeeecc
Confidence 9999999999999764 5567777766544 7788886654
No 169
>KOG2919 consensus Guanine nucleotide-binding protein [General function prediction only]
Probab=99.87 E-value=5.6e-20 Score=154.46 Aligned_cols=254 Identities=17% Similarity=0.277 Sum_probs=183.4
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-------e-----eeccc-CcCCCEEEEEee-------CCCCCeEEEE
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-------C-----TGALM-GHTGSIKSLCSH-------PTNSDILVSG 169 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-------~-----~~~~~-~h~~~v~~l~~~-------~~~~~~l~s~ 169 (512)
-...+.|+|||..|++-+.|..+.+|++...- . ..+++ .....|..-+|. |+. +++++.
T Consensus 51 f~kgckWSPDGSciL~~sedn~l~~~nlP~dlys~~~~~~~~~~~~~~~r~~eg~tvydy~wYs~M~s~qP~t-~l~a~s 129 (406)
T KOG2919|consen 51 FLKGCKWSPDGSCILSLSEDNCLNCWNLPFDLYSKKADGPLNFSKHLSYRYQEGETVYDYCWYSRMKSDQPST-NLFAVS 129 (406)
T ss_pred hhccceeCCCCceEEeecccCeeeEEecChhhcccCCCCccccccceeEEeccCCEEEEEEeeeccccCCCcc-ceeeec
Confidence 34568999999999999999999999974310 0 01111 123567777776 444 789999
Q ss_pred eCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEe
Q 010390 170 SRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWD 249 (512)
Q Consensus 170 ~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd 249 (512)
+.|.-|++||.-+++........... ..-....+++|+|||.+|++ | ....|++||
T Consensus 130 sr~~PIh~wdaftG~lraSy~~ydh~----------------------de~taAhsL~Fs~DGeqlfa-G-ykrcirvFd 185 (406)
T KOG2919|consen 130 SRDQPIHLWDAFTGKLRASYRAYDHQ----------------------DEYTAAHSLQFSPDGEQLFA-G-YKRCIRVFD 185 (406)
T ss_pred cccCceeeeeccccccccchhhhhhH----------------------HhhhhheeEEecCCCCeEee-c-ccceEEEee
Confidence 99999999999988766543221100 00124568999999999996 6 689999999
Q ss_pred c-cCccceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390 250 T-RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE 327 (512)
Q Consensus 250 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
+ +.++......... ....+..+-|.+++|+|.. ..+++++...++-||.-.. ..++..+.++. .-|+.++
T Consensus 186 t~RpGr~c~vy~t~~----~~k~gq~giisc~a~sP~~~~~~a~gsY~q~~giy~~~~--~~pl~llggh~--gGvThL~ 257 (406)
T KOG2919|consen 186 TSRPGRDCPVYTTVT----KGKFGQKGIISCFAFSPMDSKTLAVGSYGQRVGIYNDDG--RRPLQLLGGHG--GGVTHLQ 257 (406)
T ss_pred ccCCCCCCcchhhhh----cccccccceeeeeeccCCCCcceeeecccceeeeEecCC--CCceeeecccC--CCeeeEE
Confidence 9 4443222111000 0133445678999999955 4899999988888887433 55666666664 5588999
Q ss_pred ECCCCCEEEEecC-CCCEEEEecCCCCCCCceeccccC-CeEEE--EeCCCCCCeEEEEeCCCcEEEEeCCC-Cc
Q 010390 328 ICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHDG-EVTAV--NWCPNEAGKIVTSSDDYTVRLWSLEN-SR 397 (512)
Q Consensus 328 ~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~~-~v~~v--~~~~~~~~~l~s~~~dg~i~vwd~~~-~~ 397 (512)
|.++|+.|++|.. |-.|..||++....++..+..|.+ .=..| ...|++ ++|++|+.||.|++||++. +.
T Consensus 258 ~~edGn~lfsGaRk~dkIl~WDiR~~~~pv~~L~rhv~~TNQRI~FDld~~~-~~LasG~tdG~V~vwdlk~~gn 331 (406)
T KOG2919|consen 258 WCEDGNKLFSGARKDDKILCWDIRYSRDPVYALERHVGDTNQRILFDLDPKG-EILASGDTDGSVRVWDLKDLGN 331 (406)
T ss_pred eccCcCeecccccCCCeEEEEeehhccchhhhhhhhccCccceEEEecCCCC-ceeeccCCCccEEEEecCCCCC
Confidence 9999999999886 567999999998887888888865 33334 456888 8999999999999999987 55
No 170
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.87 E-value=2.9e-20 Score=166.79 Aligned_cols=229 Identities=15% Similarity=0.261 Sum_probs=164.4
Q ss_pred eEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec--C
Q 010390 42 VTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK--E 119 (512)
Q Consensus 42 ~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~--~ 119 (512)
+..++.||++-|+|+.| +.||.+||+|+.|-.+.|||.-..+. ....-.+|...|.++.|-| +
T Consensus 42 lE~eL~GH~GCVN~LeW---n~dG~lL~SGSDD~r~ivWd~~~~Kl------------lhsI~TgHtaNIFsvKFvP~tn 106 (758)
T KOG1310|consen 42 LEAELTGHTGCVNCLEW---NADGELLASGSDDTRLIVWDPFEYKL------------LHSISTGHTANIFSVKFVPYTN 106 (758)
T ss_pred hhhhhccccceecceee---cCCCCEEeecCCcceEEeecchhcce------------eeeeecccccceeEEeeeccCC
Confidence 45688999999999999 99999999999999999999764322 1233369999999999999 6
Q ss_pred CCEEEEEeCCCcEEEEeCCCC----------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390 120 DTNILTASGDQTIKIWDAEKK----------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 189 (512)
.+.+++|..|..|+++|+... +....+..|...|..|+-.|.+++.+.+++.||+|+-+|++....-...
T Consensus 107 nriv~sgAgDk~i~lfdl~~~~~~~~d~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p~ 186 (758)
T KOG1310|consen 107 NRIVLSGAGDKLIKLFDLDSSKEGGMDHGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNPD 186 (758)
T ss_pred CeEEEeccCcceEEEEecccccccccccCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCcc
Confidence 678889999999999999842 3455667899999999999999999999999999999999864321110
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC-------
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP------- 262 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~------- 262 (512)
.. ...........--...++..+|....+++.|+.|-..++||.+...........
T Consensus 187 ~~-----------------~~~~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~ 249 (758)
T KOG1310|consen 187 ED-----------------CPSILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPK 249 (758)
T ss_pred cc-----------------ccHHHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCc
Confidence 00 000000111122367899999999888888888999999996532221111110
Q ss_pred -----------Cccc-cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 010390 263 -----------HAES-SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYN 302 (512)
Q Consensus 263 -----------~~~~-~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 302 (512)
+... ..........++-+.|+|+|.-|++.-....|+++|
T Consensus 250 ~~~cv~yf~p~hlkn~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfd 301 (758)
T KOG1310|consen 250 DCRCVRYFSPGHLKNSQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFD 301 (758)
T ss_pred ccchhheecCccccCcccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEe
Confidence 0000 000111112367788999999888877777888888
No 171
>KOG1009 consensus Chromatin assembly complex 1 subunit B/CAC2 (contains WD40 repeats) [Chromatin structure and dynamics; Replication, recombination and repair]
Probab=99.86 E-value=2.6e-20 Score=161.20 Aligned_cols=295 Identities=15% Similarity=0.269 Sum_probs=206.1
Q ss_pred CCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCe---------eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390 108 QNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKK---------CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI 177 (512)
Q Consensus 108 ~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~---------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 177 (512)
..+|.++.|.+++. .|+||+.|..|+||-++.+. ....+..|...|+++.|+|++ .+|++|+.+|.|.+
T Consensus 13 ~~pv~s~dfq~n~~~~laT~G~D~~iriW~v~r~~~~~~~~~V~y~s~Ls~H~~aVN~vRf~p~g-elLASg~D~g~v~l 91 (434)
T KOG1009|consen 13 HEPVYSVDFQKNSLNKLATAGGDKDIRIWKVNRSEPGGGDMKVEYLSSLSRHTRAVNVVRFSPDG-ELLASGGDGGEVFL 91 (434)
T ss_pred CCceEEEEeccCcccceecccCccceeeeeeeecCCCCCceeEEEeecccCCcceeEEEEEcCCc-CeeeecCCCceEEE
Confidence 46899999999776 99999999999999886542 345677899999999999998 99999999999999
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
|-........ .+ . ................+|...+..++|+|++..+++ ++.|..+++||+..+....
T Consensus 92 Wk~~~~~~~~---~d-------~-e~~~~ke~w~v~k~lr~h~~diydL~Ws~d~~~l~s-~s~dns~~l~Dv~~G~l~~ 159 (434)
T KOG1009|consen 92 WKQGDVRIFD---AD-------T-EADLNKEKWVVKKVLRGHRDDIYDLAWSPDSNFLVS-GSVDNSVRLWDVHAGQLLA 159 (434)
T ss_pred EEecCcCCcc---cc-------c-hhhhCccceEEEEEecccccchhhhhccCCCceeee-eeccceEEEEEeccceeEe
Confidence 9876411110 00 0 000111112233456679999999999999999887 5589999999999998776
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC-------------------CCCceEeeeece
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL-------------------DKGPIQHFSGCR 318 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-------------------~~~~~~~~~~~~ 318 (512)
....|...+..++|+|-++++++-+.|...+.+.+... +....+.+....
T Consensus 160 -----------~~~dh~~yvqgvawDpl~qyv~s~s~dr~~~~~~~~~~~~~~~~~~~~m~~~~~~~~e~~s~rLfhDeT 228 (434)
T KOG1009|consen 160 -----------ILDDHEHYVQGVAWDPLNQYVASKSSDRHPEGFSAKLKQVIKRHGLDIMPAKAFNEREGKSTRLFHDET 228 (434)
T ss_pred -----------eccccccccceeecchhhhhhhhhccCcccceeeeeeeeeeeeeeeeEeeecccCCCCcceeeeeecCc
Confidence 57788889999999999999999998886666654221 111222233333
Q ss_pred eceeEEEEEECCCCCEEEEecC----C-----CCEEEEecCCCCCCCceeccccCCeEEEEeCC----------------
Q 010390 319 IESFYVKSEICPNASHILSGSS----D-----GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP---------------- 373 (512)
Q Consensus 319 ~~~~~~~~~~s~~~~~l~~g~~----d-----g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~---------------- 373 (512)
...+...++|+|+|.+|++... + +..++|+-...+.+...+.+-..++..+.|+|
T Consensus 229 lksFFrRlsfTPdG~llvtPag~~~~g~~~~~n~tYvfsrk~l~rP~~~lp~~~k~~lavr~~pVy~elrp~~~~~~~~~ 308 (434)
T KOG1009|consen 229 LKSFFRRLSFTPDGSLLVTPAGLFKVGGGVFRNTSYVFSRKDLKRPAARLPSPKKPALAVRFSPVYYELRPLSSEKFLFV 308 (434)
T ss_pred hhhhhhhcccCCCCcEEEcccceeeeCCceeeceeEeeccccccCceeecCCCCcceEEEEeeeeEEEeccccccccccc
Confidence 4456677899999999987642 2 23466665555555555555566666666654
Q ss_pred --CCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCC
Q 010390 374 --NEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSS 451 (512)
Q Consensus 374 --~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~ 451 (512)
.+ ..++.++. ..|+|||.++-..+. ....-++..+. +++|++||..+++.|.
T Consensus 309 lpyr-lvfaiAt~-~svyvydtq~~~P~~-----------------------~v~nihy~~iT-Diaws~dg~~l~vSS~ 362 (434)
T KOG1009|consen 309 LPYR-LVFAIATK-NSVYVYDTQTLEPLA-----------------------VVDNIHYSAIT-DIAWSDDGSVLLVSST 362 (434)
T ss_pred cccc-eEEEEeec-ceEEEeccccccceE-----------------------EEeeeeeeeec-ceeecCCCcEEEEecc
Confidence 12 23444444 468899887654322 23444566666 8888888877776543
Q ss_pred C
Q 010390 452 D 452 (512)
Q Consensus 452 ~ 452 (512)
.
T Consensus 363 D 363 (434)
T KOG1009|consen 363 D 363 (434)
T ss_pred C
Confidence 3
No 172
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.86 E-value=3.7e-19 Score=168.90 Aligned_cols=314 Identities=15% Similarity=0.172 Sum_probs=216.1
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
|.-.+.++++ ||+++++|+|..||.|.+|.--... ......+.+.-|...|.+++|+++|.+|++|+.
T Consensus 204 Htf~~t~~~~---spn~~~~Aa~d~dGrI~vw~d~~~~---------~~~~t~t~lHWH~~~V~~L~fS~~G~~LlSGG~ 271 (792)
T KOG1963|consen 204 HTFNITCVAL---SPNERYLAAGDSDGRILVWRDFGSS---------DDSETCTLLHWHHDEVNSLSFSSDGAYLLSGGR 271 (792)
T ss_pred hcccceeEEe---ccccceEEEeccCCcEEEEeccccc---------cccccceEEEecccccceeEEecCCceEeeccc
Confidence 6666778888 9999999999999999999643210 112235667889999999999999999999999
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
.|.+.+|.+.+++ .+-+..-.++|..+.++|++ .+.+....|..|.+-...+.........-.....
T Consensus 272 E~VLv~Wq~~T~~-kqfLPRLgs~I~~i~vS~ds-~~~sl~~~DNqI~li~~~dl~~k~tIsgi~~~~~----------- 338 (792)
T KOG1963|consen 272 EGVLVLWQLETGK-KQFLPRLGSPILHIVVSPDS-DLYSLVLEDNQIHLIKASDLEIKSTISGIKPPTP----------- 338 (792)
T ss_pred ceEEEEEeecCCC-cccccccCCeeEEEEEcCCC-CeEEEEecCceEEEEeccchhhhhhccCccCCCc-----------
Confidence 9999999999998 55566677899999999998 7777778899999988766554433222110000
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF 288 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (512)
.......+-.+.++++|..+.++..| ..|.|.+||+-+...+................+.-++++++.+..|.+
T Consensus 339 -----~~k~~~~~l~t~~~idpr~~~~vln~-~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~ 412 (792)
T KOG1963|consen 339 -----STKTRPQSLTTGVSIDPRTNSLVLNG-HPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSW 412 (792)
T ss_pred -----cccccccccceeEEEcCCCCceeecC-CCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceE
Confidence 00112234567788888666666655 799999999988776654332222111122244556888888888999
Q ss_pred EEEEe--------cC--CeEEEEEcccCCCCce-EeeeeceeceeEEEEE-ECCCCC-EEEEecCCCCEEEEecCCCCC-
Q 010390 289 LTASC--------MD--HRIYLYNVLQLDKGPI-QHFSGCRIESFYVKSE-ICPNAS-HILSGSSDGNAYVWQVNKPQA- 354 (512)
Q Consensus 289 l~~~~--------~d--g~i~i~d~~~~~~~~~-~~~~~~~~~~~~~~~~-~s~~~~-~l~~g~~dg~i~iw~~~~~~~- 354 (512)
+++.- .| -.+++|-.......-. .+.-..++.......+ .++... ..++++.||.++||-+...+.
T Consensus 413 maT~E~~~d~~~~~~~e~~LKFW~~n~~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~ 492 (792)
T KOG1963|consen 413 MATLEARIDKFNFFDGEVSLKFWQYNPNSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNI 492 (792)
T ss_pred EEEeeeeehhhhccCceEEEEEEEEcCCcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEeccccc
Confidence 99874 22 3577887654333221 1111222222233333 333333 789999999999999844322
Q ss_pred --------CCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 355 --------DPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 355 --------~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
....-.-|..++++++|+.|| -+++.+.|++|.+||..+
T Consensus 493 ~k~~s~W~c~~i~sy~k~~i~a~~fs~dG--slla~s~~~~Itiwd~~~ 539 (792)
T KOG1963|consen 493 YKKSSNWTCKAIGSYHKTPITALCFSQDG--SLLAVSFDDTITIWDYDT 539 (792)
T ss_pred CcCccceEEeeeeccccCcccchhhcCCC--cEEEEecCCEEEEecCCC
Confidence 111222378899999999998 677778889999999998
No 173
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.86 E-value=1.1e-19 Score=150.46 Aligned_cols=257 Identities=13% Similarity=0.257 Sum_probs=189.3
Q ss_pred CcEEEEEEec---CCCEEEEEeC----CCcEEEEeCC--CCeeeecc-cCcCCCEEEEEeeCCC----CCeEEEEeCCCc
Q 010390 109 NAIFDLCWIK---EDTNILTASG----DQTIKIWDAE--KKKCTGAL-MGHTGSIKSLCSHPTN----SDILVSGSRDGS 174 (512)
Q Consensus 109 ~~V~~l~~s~---~~~~l~s~~~----dg~i~iwd~~--~~~~~~~~-~~h~~~v~~l~~~~~~----~~~l~s~~~dg~ 174 (512)
-.++++.|+. .+.+|+.|+. .+.|.|-.+. +++.+..- ..|.-+++.+.|.|+. +.+||+++. .
T Consensus 45 ~~lya~~Ws~~~~~~~rla~gS~~Ee~~Nkvqiv~ld~~s~e~~~~a~fd~~YP~tK~~wiPd~~g~~pdlLATs~D--~ 122 (364)
T KOG0290|consen 45 WPLYAMNWSVRPDKKFRLAVGSFIEEYNNKVQIVQLDEDSGELVEDANFDHPYPVTKLMWIPDSKGVYPDLLATSSD--F 122 (364)
T ss_pred CceeeeccccCCCcceeEEEeeeccccCCeeEEEEEccCCCceeccCCCCCCCCccceEecCCccccCcchhhcccC--e
Confidence 4678888884 3456777764 4567776553 34433221 3588899999999975 346666553 8
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK 254 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~ 254 (512)
+|+|.+...+....... .....+...+..++++..|+.-...++.+++-|.+..|||++++.
T Consensus 123 LRlWri~~ee~~~~~~~------------------~L~~~kns~~~aPlTSFDWne~dp~~igtSSiDTTCTiWdie~~~ 184 (364)
T KOG0290|consen 123 LRLWRIGDEESRVELQS------------------VLNNNKNSEFCAPLTSFDWNEVDPNLIGTSSIDTTCTIWDIETGV 184 (364)
T ss_pred EEEEeccCcCCceehhh------------------hhccCcccccCCcccccccccCCcceeEeecccCeEEEEEEeecc
Confidence 99999875332211100 001112334567999999999888777778899999999999873
Q ss_pred c--eecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390 255 A--QITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN 331 (512)
Q Consensus 255 ~--~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 331 (512)
. +.+ ++..|...|..++|..++. .+++.+.||.+|+||++..+...+ .++.........+++|+++
T Consensus 185 ~~~vkT----------QLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTI-IYE~p~~~~pLlRLswnkq 253 (364)
T KOG0290|consen 185 SGTVKT----------QLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTI-IYEDPSPSTPLLRLSWNKQ 253 (364)
T ss_pred ccceee----------EEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceE-EecCCCCCCcceeeccCcC
Confidence 2 222 5788999999999998664 788999999999999988654333 2333333456778899875
Q ss_pred -CCEEEEecCC-CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 332 -ASHILSGSSD-GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 332 -~~~l~~g~~d-g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
-+++|+-..| ..|.|.|++....++..+.+|.+.|++++|.|.....|.|+|+|..+.+||+...
T Consensus 254 DpnymATf~~dS~~V~iLDiR~P~tpva~L~~H~a~VNgIaWaPhS~~hictaGDD~qaliWDl~q~ 320 (364)
T KOG0290|consen 254 DPNYMATFAMDSNKVVILDIRVPCTPVARLRNHQASVNGIAWAPHSSSHICTAGDDCQALIWDLQQM 320 (364)
T ss_pred CchHHhhhhcCCceEEEEEecCCCcceehhhcCcccccceEecCCCCceeeecCCcceEEEEecccc
Confidence 4667765544 5699999999988889999999999999999999899999999999999999864
No 174
>KOG0303 consensus Actin-binding protein Coronin, contains WD40 repeats [Cytoskeleton]
Probab=99.85 E-value=5.9e-20 Score=158.31 Aligned_cols=251 Identities=16% Similarity=0.257 Sum_probs=186.1
Q ss_pred eccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC-------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390 102 SDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKK-------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG 173 (512)
Q Consensus 102 ~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg 173 (512)
-...+|+++|..++|+| +...||+|+.|.+|.||++..+ +++..+.+|...|--+.|+|.-.+.|++++.|.
T Consensus 75 P~v~GHt~~vLDi~w~PfnD~vIASgSeD~~v~vW~IPe~~l~~~ltepvv~L~gH~rrVg~V~wHPtA~NVLlsag~Dn 154 (472)
T KOG0303|consen 75 PLVCGHTAPVLDIDWCPFNDCVIASGSEDTKVMVWQIPENGLTRDLTEPVVELYGHQRRVGLVQWHPTAPNVLLSAGSDN 154 (472)
T ss_pred CCccCccccccccccCccCCceeecCCCCceEEEEECCCcccccCcccceEEEeecceeEEEEeecccchhhHhhccCCc
Confidence 34579999999999999 6778899999999999998654 456778899999999999999889999999999
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL 253 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~ 253 (512)
+|.+||+.+++.... + .|...|.++.|+.+|..+++++ .|..|+|||.+++
T Consensus 155 ~v~iWnv~tgeali~---------------------------l-~hpd~i~S~sfn~dGs~l~Ttc-kDKkvRv~dpr~~ 205 (472)
T KOG0303|consen 155 TVSIWNVGTGEALIT---------------------------L-DHPDMVYSMSFNRDGSLLCTTC-KDKKVRVIDPRRG 205 (472)
T ss_pred eEEEEeccCCceeee---------------------------c-CCCCeEEEEEeccCCceeeeec-ccceeEEEcCCCC
Confidence 999999998875442 2 3888999999999999999866 8999999999999
Q ss_pred cceecccCCCccccccccccc-cCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC
Q 010390 254 KAQITQAWPHAESSSAKETRL-HGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC 329 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~-~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 329 (512)
+.+... ..|. ..-..+.|-.+|.++.+|. .+..+-+||..+.+... .+......+.+.---|.
T Consensus 206 ~~v~e~-----------~~heG~k~~Raifl~~g~i~tTGfsr~seRq~aLwdp~nl~eP~--~~~elDtSnGvl~PFyD 272 (472)
T KOG0303|consen 206 TVVSEG-----------VAHEGAKPARAIFLASGKIFTTGFSRMSERQIALWDPNNLEEPI--ALQELDTSNGVLLPFYD 272 (472)
T ss_pred cEeeec-----------ccccCCCcceeEEeccCceeeeccccccccceeccCcccccCcc--eeEEeccCCceEEeeec
Confidence 877642 2222 2345667778888555554 56789999987765442 22222223334445688
Q ss_pred CCCCEE-EEecCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 330 PNASHI-LSGSSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 330 ~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+|.+.+ ++|-.|+.|+.|.+......+..+.. ...+-..+.|.|.. . +-.+..-..++|.+.+..
T Consensus 273 ~dt~ivYl~GKGD~~IRYyEit~d~P~~hyln~f~S~epQRG~g~mPKR-G--l~Vs~cEI~rfyKl~~~~ 340 (472)
T KOG0303|consen 273 PDTSIVYLCGKGDSSIRYFEITNEPPFVHYLNTFSSKEPQRGMGFMPKR-G--LDVSKCEIARFYKLHERK 340 (472)
T ss_pred CCCCEEEEEecCCcceEEEEecCCCceeEEecccccCCccccccccccc-c--ccchHHHHHHHHHhhcce
Confidence 888877 56667999999999887643333322 34567778888864 2 233333455666666553
No 175
>KOG2445 consensus Nuclear pore complex component (sc Seh1) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=99.85 E-value=3.2e-19 Score=148.97 Aligned_cols=219 Identities=21% Similarity=0.339 Sum_probs=149.0
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----eeeecccCcCCCEEEEEee-CCCCCeEEEEeCCCcEEEEe
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----KCTGALMGHTGSIKSLCSH-PTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----~~~~~~~~h~~~v~~l~~~-~~~~~~l~s~~~dg~i~vwd 179 (512)
.+|.+-|+++.|.+.|+.+|+|+.|++|+|||.+.. .+....+.|.+.|..+.|. |.-++.+|+++.|+++.||.
T Consensus 10 s~h~DlihdVs~D~~GRRmAtCSsDq~vkI~d~~~~s~~W~~Ts~Wrah~~Si~rV~WAhPEfGqvvA~cS~Drtv~iWE 89 (361)
T KOG2445|consen 10 SGHKDLIHDVSFDFYGRRMATCSSDQTVKIWDSTSDSGTWSCTSSWRAHDGSIWRVVWAHPEFGQVVATCSYDRTVSIWE 89 (361)
T ss_pred cCCcceeeeeeecccCceeeeccCCCcEEEEeccCCCCceEEeeeEEecCCcEEEEEecCccccceEEEEecCCceeeee
Confidence 478999999999999999999999999999996543 5667788999999999995 55568999999999999997
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ 259 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~ 259 (512)
-...... ..=+-|..++
T Consensus 90 E~~~~~~--------------------------------------------------------~~~~~Wv~~t------- 106 (361)
T KOG2445|consen 90 EQEKSEE--------------------------------------------------------AHGRRWVRRT------- 106 (361)
T ss_pred ecccccc--------------------------------------------------------cccceeEEEE-------
Confidence 5311100 0000111110
Q ss_pred cCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeEEEEEcccCCCC----ceEee-----eeceeceeEEEEEE
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRIYLYNVLQLDKG----PIQHF-----SGCRIESFYVKSEI 328 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~-----~~~~~~~~~~~~~~ 328 (512)
.+......|+.+.|.| -|-.|++++.||.+|||+.-+.... ....+ ..........|+.|
T Consensus 107 ---------tl~DsrssV~DV~FaP~hlGLklA~~~aDG~lRIYEA~dp~nLs~W~Lq~Ei~~~~~pp~~~~~~~~CvsW 177 (361)
T KOG2445|consen 107 ---------TLVDSRSSVTDVKFAPKHLGLKLAAASADGILRIYEAPDPMNLSQWTLQHEIQNVIDPPGKNKQPCFCVSW 177 (361)
T ss_pred ---------EeecCCcceeEEEecchhcceEEEEeccCcEEEEEecCCccccccchhhhhhhhccCCcccccCcceEEee
Confidence 1122223455666655 3456666666777777664321110 00001 11123344667888
Q ss_pred CCC---CCEEEEecCC-----CCEEEEecCCCC---CCCceeccccCCeEEEEeCCCCC---CeEEEEeCCCcEEEEeCC
Q 010390 329 CPN---ASHILSGSSD-----GNAYVWQVNKPQ---ADPIKLKSHDGEVTAVNWCPNEA---GKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 329 s~~---~~~l~~g~~d-----g~i~iw~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~---~~l~s~~~dg~i~vwd~~ 394 (512)
+|. ..+||+|+.+ +.++||...... .....+.+|..+|++++|.|.-. .+||+++.|| |+||++.
T Consensus 178 n~sr~~~p~iAvgs~e~a~~~~~~~Iye~~e~~rKw~kva~L~d~~dpI~di~wAPn~Gr~y~~lAvA~kDg-v~I~~v~ 256 (361)
T KOG2445|consen 178 NPSRMHEPLIAVGSDEDAPHLNKVKIYEYNENGRKWLKVAELPDHTDPIRDISWAPNIGRSYHLLAVATKDG-VRIFKVK 256 (361)
T ss_pred ccccccCceEEEEcccCCccccceEEEEecCCcceeeeehhcCCCCCcceeeeeccccCCceeeEEEeecCc-EEEEEEe
Confidence 874 5678888876 479999877654 22356779999999999999642 4799999999 9999998
Q ss_pred CC
Q 010390 395 NS 396 (512)
Q Consensus 395 ~~ 396 (512)
..
T Consensus 257 ~~ 258 (361)
T KOG2445|consen 257 VA 258 (361)
T ss_pred ec
Confidence 53
No 176
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.85 E-value=6.4e-18 Score=164.47 Aligned_cols=295 Identities=24% Similarity=0.437 Sum_probs=221.3
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEE-ecCCC-
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCW-IKEDT- 121 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~-s~~~~- 121 (512)
...+|...+.++.+ .+++..++.++.|+.+.+|+..... ..+..+..+. ..+..+.+ ++++.
T Consensus 60 ~~~~~~~~i~~~~~---~~~~~~~~~~~~d~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~~~~~~~~~~ 124 (466)
T COG2319 60 LLRGHEDSITSIAF---SPDGELLLSGSSDGTIKLWDLDNGE------------KLIKSLEGLHDSSVSKLALSSPDGNS 124 (466)
T ss_pred eeeeccceEEEEEE---CCCCcEEEEecCCCcEEEEEcCCCc------------eeEEEEeccCCCceeeEEEECCCcce
Confidence 45678999999999 9999999999999999999987653 1244444533 37777777 77777
Q ss_pred EEEEEeC-CCcEEEEeCCC-CeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccceeeec
Q 010390 122 NILTASG-DQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 122 ~l~s~~~-dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
.++..+. |+.+.+|+... ......+..|...|..++|+|++ ..+++++. |+.+++|++......
T Consensus 125 ~~~~~~~~d~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~------------ 191 (466)
T COG2319 125 ILLASSSLDGTVKLWDLSTPGKLIRTLEGHSESVTSLAFSPDG-KLLASGSSLDGTIKLWDLRTGKPL------------ 191 (466)
T ss_pred EEeccCCCCccEEEEEecCCCeEEEEEecCcccEEEEEECCCC-CEEEecCCCCCceEEEEcCCCceE------------
Confidence 5555444 99999999988 78888889999999999999988 67888875 999999999863221
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.....|...+.+++|+|++..++++++.|+.|.+||...+..... ....|....
T Consensus 192 ---------------~~~~~~~~~v~~~~~~~~~~~~~~~~~~d~~i~~wd~~~~~~~~~----------~~~~~~~~~- 245 (466)
T COG2319 192 ---------------STLAGHTDPVSSLAFSPDGGLLIASGSSDGTIRLWDLSTGKLLRS----------TLSGHSDSV- 245 (466)
T ss_pred ---------------EeeccCCCceEEEEEcCCcceEEEEecCCCcEEEEECCCCcEEee----------ecCCCCcce-
Confidence 133447889999999999885555556899999998885544432 133333333
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
...|++++.++++++.|+.+++|++..... .......+ ...+.++.|+|++..+++++.|+.+.+|+..........
T Consensus 246 ~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~-~~~~~~~~--~~~v~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~~~~~~ 322 (466)
T COG2319 246 VSSFSPDGSLLASGSSDGTIRLWDLRSSSS-LLRTLSGH--SSSVLSVAFSPDGKLLASGSSDGTVRLWDLETGKLLSSL 322 (466)
T ss_pred eEeECCCCCEEEEecCCCcEEEeeecCCCc-EEEEEecC--CccEEEEEECCCCCEEEEeeCCCcEEEEEcCCCceEEEe
Confidence 238999998899999999999999976544 22233222 456778899999888888998988999988776553222
Q ss_pred e-ccccCCeEEEEeCCCCCCeEEEE-eCCCcEEEEeCCCCc
Q 010390 359 L-KSHDGEVTAVNWCPNEAGKIVTS-SDDYTVRLWSLENSR 397 (512)
Q Consensus 359 ~-~~h~~~v~~v~~~~~~~~~l~s~-~~dg~i~vwd~~~~~ 397 (512)
. ..|...+..+.|.+++ ..++.+ ..|+.+.+|++....
T Consensus 323 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~d~~~~~~~~~~~~ 362 (466)
T COG2319 323 TLKGHEGPVSSLSFSPDG-SLLVSGGSDDGTIRLWDLRTGK 362 (466)
T ss_pred eecccCCceEEEEECCCC-CEEEEeecCCCcEEeeecCCCc
Confidence 2 4787789999994332 345544 688999999999887
No 177
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.84 E-value=6.5e-19 Score=169.84 Aligned_cols=296 Identities=20% Similarity=0.222 Sum_probs=203.1
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecccc---CCCcEEEEEEec--CCCEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVA---HQNAIFDLCWIK--EDTNI 123 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~s~--~~~~l 123 (512)
...+...+.| +|=...+++++..-.|+|||.+.+.. +..|.. -...|+.+.+-. |..+|
T Consensus 1063 n~~~pk~~~~---hpf~p~i~~ad~r~~i~vwd~e~~~~-------------l~~F~n~~~~~t~Vs~l~liNe~D~aLl 1126 (1387)
T KOG1517|consen 1063 NNQPPKTLKF---HPFEPQIAAADDRERIRVWDWEKGRL-------------LNGFDNGAFPDTRVSDLELINEQDDALL 1126 (1387)
T ss_pred CCCCCceeee---cCCCceeEEcCCcceEEEEecccCce-------------eccccCCCCCCCccceeeeecccchhhe
Confidence 3446778888 55566788888778999999987654 222322 245788888876 56788
Q ss_pred EEEeCCCcEEEEeCC-C----CeeeecccC-------cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 124 LTASGDQTIKIWDAE-K----KKCTGALMG-------HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~-~----~~~~~~~~~-------h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
++|+.||.|+||+-- + .+.+..+.+ ..+.=.-+.|.... .+|+++|.-..|+|||............
T Consensus 1127 Ltas~dGvIRIwk~y~~~~~~~eLVTaw~~Ls~~~~~~r~~~~v~dWqQ~~-G~Ll~tGd~r~IRIWDa~~E~~~~diP~ 1205 (1387)
T KOG1517|consen 1127 LTASSDGVIRIWKDYADKWKKPELVTAWSSLSDQLPGARGTGLVVDWQQQS-GHLLVTGDVRSIRIWDAHKEQVVADIPY 1205 (1387)
T ss_pred eeeccCceEEEecccccccCCceeEEeeccccccCccCCCCCeeeehhhhC-CeEEecCCeeEEEEEecccceeEeeccc
Confidence 899999999999732 2 233322221 11111345677766 4555555578999999986654332211
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
+....++++.-+.....++++|..||.|++||.+....... .....
T Consensus 1206 --------------------------~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~--------v~~~R 1251 (1387)
T KOG1517|consen 1206 --------------------------GSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSL--------VCVYR 1251 (1387)
T ss_pred --------------------------CCCccceeecccccCCceEEEeecCCceEEeecccCCcccc--------ceeec
Confidence 23446777776665556666798999999999986543211 01344
Q ss_pred ccccC--eeEEEeCCCCCE-EEEEecCCeEEEEEcccCCCCceEeeeece-eceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 272 TRLHG--ISSLSQDSNGVF-LTASCMDHRIYLYNVLQLDKGPIQHFSGCR-IESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 272 ~~~~~--i~~~~~~~~~~~-l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~-~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
.|... |..+.+.+.|.. |++|+.+|.|++||++............+. ..+..+++..+++...+|+|+. +.|+||
T Consensus 1252 ~h~~~~~Iv~~slq~~G~~elvSgs~~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~hapiiAsGs~-q~ikIy 1330 (1387)
T KOG1517|consen 1252 EHNDVEPIVHLSLQRQGLGELVSGSQDGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHAPIIASGSA-QLIKIY 1330 (1387)
T ss_pred ccCCcccceeEEeecCCCcceeeeccCCeEEEEecccCcccccceeeeccccCccceeeeeccCCCeeeecCc-ceEEEE
Confidence 45444 899999887765 999999999999999874333333333322 1224778999999999999998 899999
Q ss_pred ecCCCCCCCc-----eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 348 QVNKPQADPI-----KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 348 ~~~~~~~~~~-----~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
++...+.... .+....+.+.|++|+|.. -++|+|+.|..|.||.....+
T Consensus 1331 ~~~G~~l~~~k~n~~F~~q~~gs~scL~FHP~~-~llAaG~~Ds~V~iYs~~k~~ 1384 (1387)
T KOG1517|consen 1331 SLSGEQLNIIKYNPGFMGQRIGSVSCLAFHPHR-LLLAAGSADSTVSIYSCEKPR 1384 (1387)
T ss_pred ecChhhhcccccCcccccCcCCCcceeeecchh-HhhhhccCCceEEEeecCCcC
Confidence 9976543221 122235678999999998 789999999999999987654
No 178
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.84 E-value=1.6e-17 Score=154.60 Aligned_cols=282 Identities=8% Similarity=0.099 Sum_probs=179.5
Q ss_pred EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe-CCCcEEEEeCC-CCee--ee
Q 010390 69 AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS-GDQTIKIWDAE-KKKC--TG 144 (512)
Q Consensus 69 atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~iwd~~-~~~~--~~ 144 (512)
++...++.|.+||+.+... ...+..+. +.+....++++|++++|++++ .++.|.+|++. +++. +.
T Consensus 6 ~~~~~~~~I~~~~~~~~g~----------l~~~~~~~-~~~~~~~l~~spd~~~lyv~~~~~~~i~~~~~~~~g~l~~~~ 74 (330)
T PRK11028 6 IASPESQQIHVWNLNHEGA----------LTLLQVVD-VPGQVQPMVISPDKRHLYVGVRPEFRVLSYRIADDGALTFAA 74 (330)
T ss_pred EEcCCCCCEEEEEECCCCc----------eeeeeEEe-cCCCCccEEECCCCCEEEEEECCCCcEEEEEECCCCceEEee
Confidence 3346789999999963211 11233333 345677899999999987664 47889999986 3332 22
Q ss_pred cccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 145 ALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 145 ~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
... ..+....++|+|++ ++|++++ .++.|.+|++......... .... .+....
T Consensus 75 ~~~-~~~~p~~i~~~~~g-~~l~v~~~~~~~v~v~~~~~~g~~~~~-----------------------~~~~-~~~~~~ 128 (330)
T PRK11028 75 ESP-LPGSPTHISTDHQG-RFLFSASYNANCVSVSPLDKDGIPVAP-----------------------IQII-EGLEGC 128 (330)
T ss_pred eec-CCCCceEEEECCCC-CEEEEEEcCCCeEEEEEECCCCCCCCc-----------------------eeec-cCCCcc
Confidence 222 23356789999998 5555554 5889999999643221100 0000 112346
Q ss_pred EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-CCeEEEEE
Q 010390 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-DHRIYLYN 302 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d 302 (512)
..++++|+++.++++...++.|.+||+++........ ... ...........++|+|+|++++++.. ++.|.+|+
T Consensus 129 ~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~-~~~----~~~~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~ 203 (330)
T PRK11028 129 HSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQE-PAE----VTTVEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQ 203 (330)
T ss_pred cEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccC-CCc----eecCCCCCCceEEECCCCCEEEEEecCCCEEEEEE
Confidence 6788999999998888788999999998633221100 000 00011234678999999999988876 89999999
Q ss_pred cccCCC--CceEeeeece----eceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCceecccc---CCeEEEEeC
Q 010390 303 VLQLDK--GPIQHFSGCR----IESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKLKSHD---GEVTAVNWC 372 (512)
Q Consensus 303 ~~~~~~--~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~~~h~---~~v~~v~~~ 372 (512)
+..... ..+..+.... .......+.++|++++++++.. ++.|.+|++...... ..+.++. .....+.++
T Consensus 204 ~~~~~~~~~~~~~~~~~p~~~~~~~~~~~i~~~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~ 282 (330)
T PRK11028 204 LKDPHGEIECVQTLDMMPADFSDTRWAADIHITPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNID 282 (330)
T ss_pred EeCCCCCEEEEEEEecCCCcCCCCccceeEEECCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEEC
Confidence 964211 1222222111 1122335889999999988754 688999999654321 1222221 245678999
Q ss_pred CCCCCeEEEEe-CCCcEEEEeCC
Q 010390 373 PNEAGKIVTSS-DDYTVRLWSLE 394 (512)
Q Consensus 373 ~~~~~~l~s~~-~dg~i~vwd~~ 394 (512)
|++ ++|+++. .+++|.+|+++
T Consensus 283 ~dg-~~l~va~~~~~~v~v~~~~ 304 (330)
T PRK11028 283 HSG-KYLIAAGQKSHHISVYEID 304 (330)
T ss_pred CCC-CEEEEEEccCCcEEEEEEc
Confidence 999 6666555 58999999875
No 179
>KOG1007 consensus WD repeat protein TSSC1, WD repeat superfamily [Function unknown]
Probab=99.83 E-value=5.2e-19 Score=146.40 Aligned_cols=234 Identities=23% Similarity=0.336 Sum_probs=166.4
Q ss_pred CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCC-------CcEEEEeCCCC----
Q 010390 73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGD-------QTIKIWDAEKK---- 140 (512)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~d-------g~i~iwd~~~~---- 140 (512)
.|+.|.+.+++.... ......|..|.+.|..++-+| +.+.|+++..+ -.+.||.+...
T Consensus 38 ~dNqVhll~~d~e~s----------~l~skvf~h~agEvw~las~P~d~~ilaT~yn~~s~s~vl~~aaiw~ipe~~~~S 107 (370)
T KOG1007|consen 38 EDNQVHLLRLDSEGS----------ELLSKVFFHHAGEVWDLASSPFDQRILATVYNDTSDSGVLTGAAIWQIPEPLGQS 107 (370)
T ss_pred CcceeEEEEecCccc----------hhhhhhhhcCCcceehhhcCCCCCceEEEEEeccCCCcceeeEEEEecccccCcc
Confidence 356787777765432 122455677889999999999 45555665542 24779987543
Q ss_pred -----eeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390 141 -----KCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS 214 (512)
Q Consensus 141 -----~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (512)
+++..+. .+-+.|.|+.|.|++ ..+++.. |..|.+|++........... ..
T Consensus 108 ~~~tlE~v~~Ldteavg~i~cvew~Pns-~klasm~-dn~i~l~~l~ess~~vaev~---------------------ss 164 (370)
T KOG1007|consen 108 NSSTLECVASLDTEAVGKINCVEWEPNS-DKLASMD-DNNIVLWSLDESSKIVAEVL---------------------SS 164 (370)
T ss_pred ccchhhHhhcCCHHHhCceeeEEEcCCC-CeeEEec-cCceEEEEcccCcchheeec---------------------cc
Confidence 2334443 355689999999977 6777665 78999999987655321100 00
Q ss_pred ecccccccEEEEEEee--cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390 215 RRKAASMSITSVLYLK--DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS 292 (512)
Q Consensus 215 ~~~~~~~~v~~~~~~~--~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (512)
.-..+....++-+|+| ++..+++++ |+++..||+++.+..... ...|...
T Consensus 165 ~s~e~~~~ftsg~WspHHdgnqv~tt~--d~tl~~~D~RT~~~~~sI----------~dAHgq~---------------- 216 (370)
T KOG1007|consen 165 ESAEMRHSFTSGAWSPHHDGNQVATTS--DSTLQFWDLRTMKKNNSI----------EDAHGQR---------------- 216 (370)
T ss_pred ccccccceecccccCCCCccceEEEeC--CCcEEEEEccchhhhcch----------hhhhcce----------------
Confidence 1112455778888988 778888764 899999999987665432 2222222
Q ss_pred ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEe
Q 010390 293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNW 371 (512)
Q Consensus 293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~ 371 (512)
+..+.|+|+.+ +|+++++||.|+|||.+..+.++..+.+|...|++|.|
T Consensus 217 ------------------------------vrdlDfNpnkq~~lvt~gDdgyvriWD~R~tk~pv~el~~HsHWvW~VRf 266 (370)
T KOG1007|consen 217 ------------------------------VRDLDFNPNKQHILVTCGDDGYVRIWDTRKTKFPVQELPGHSHWVWAVRF 266 (370)
T ss_pred ------------------------------eeeccCCCCceEEEEEcCCCccEEEEeccCCCccccccCCCceEEEEEEe
Confidence 33355556543 46889999999999999999888999999999999999
Q ss_pred CCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 372 CPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 372 ~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+|...+++++||.|..|.+|...+-.
T Consensus 267 n~~hdqLiLs~~SDs~V~Lsca~svS 292 (370)
T KOG1007|consen 267 NPEHDQLILSGGSDSAVNLSCASSVS 292 (370)
T ss_pred cCccceEEEecCCCceeEEEeccccc
Confidence 99887899999999999999876544
No 180
>KOG1188 consensus WD40 repeat protein [General function prediction only]
Probab=99.83 E-value=4e-19 Score=150.57 Aligned_cols=276 Identities=16% Similarity=0.223 Sum_probs=182.2
Q ss_pred eeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC-CcEEEEEE
Q 010390 38 EIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCW 116 (512)
Q Consensus 38 ~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~ 116 (512)
..+.++-++++|++.++.|.|..-+ ....+.+|+.||.|++||++.... .....+.+|. .+..+++-
T Consensus 58 ~tg~~l~~fk~~~~~~N~vrf~~~d-s~h~v~s~ssDG~Vr~wD~Rs~~e-----------~a~~~~~~~~~~~f~~ld~ 125 (376)
T KOG1188|consen 58 GTGQLLEEFKGPPATTNGVRFISCD-SPHGVISCSSDGTVRLWDIRSQAE-----------SARISWTQQSGTPFICLDL 125 (376)
T ss_pred cchhhhheecCCCCcccceEEecCC-CCCeeEEeccCCeEEEEEeecchh-----------hhheeccCCCCCcceEeec
Confidence 3356778899999999999996321 456899999999999999987543 2344555665 56677777
Q ss_pred ecCCCEEEEEeC----CCcEEEEeCCCCee-eecc-cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 117 IKEDTNILTASG----DQTIKIWDAEKKKC-TGAL-MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 117 s~~~~~l~s~~~----dg~i~iwd~~~~~~-~~~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
...++.+++|.. |-.|.+||++..+. +..+ ..|.+.|+++.|+|.++++|++|+.||.|.++|+......
T Consensus 126 nck~~ii~~GtE~~~s~A~v~lwDvR~~qq~l~~~~eSH~DDVT~lrFHP~~pnlLlSGSvDGLvnlfD~~~d~Ee---- 201 (376)
T KOG1188|consen 126 NCKKNIIACGTELTRSDASVVLWDVRSEQQLLRQLNESHNDDVTQLRFHPSDPNLLLSGSVDGLVNLFDTKKDNEE---- 201 (376)
T ss_pred cCcCCeEEeccccccCceEEEEEEeccccchhhhhhhhccCcceeEEecCCCCCeEEeecccceEEeeecCCCcch----
Confidence 667777887754 67899999988765 5444 6799999999999999999999999999999999755211
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-cc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-SA 269 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~ 269 (512)
..+.....+...|.++.|+.++-.-+.+-+......+|+++.+........+..... ..
T Consensus 202 --------------------DaL~~viN~~sSI~~igw~~~~ykrI~clTH~Etf~~~ele~~~~~~~~~~~~~~~~d~r 261 (376)
T KOG1188|consen 202 --------------------DALLHVINHGSSIHLIGWLSKKYKRIMCLTHMETFAIYELEDGSEETWLENPDVSADDLR 261 (376)
T ss_pred --------------------hhHHHhhcccceeeeeeeecCCcceEEEEEccCceeEEEccCCChhhcccCccchhhhHH
Confidence 111122345567999999988732233344789999999998885544332211000 00
Q ss_pred ccccccCeeEEEeCCCCCEEEEEec-CCeEEEEEccc---CC-CCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 270 KETRLHGISSLSQDSNGVFLTASCM-DHRIYLYNVLQ---LD-KGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~---~~-~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
.......+-......++..++.++. -|...++-+.. +. ......+.++. ...+..+.|...+.++.+|+.||.+
T Consensus 262 ~~~~~dY~I~~~~~~~~~~~~l~g~~~n~~~~~~~~~~~s~~~~~~~a~l~g~~-~eiVR~i~~~~~~~~l~TGGEDG~l 340 (376)
T KOG1188|consen 262 KEDNCDYVINEHSPGDKDTCALAGTDSNKGTIFPLVDTSSGSLLTEPAILQGGH-EEIVRDILFDVKNDVLYTGGEDGLL 340 (376)
T ss_pred hhhhhhheeecccCCCcceEEEeccccCceeEEEeeecccccccCccccccCCc-HHHHHHHhhhcccceeeccCCCceE
Confidence 0001111111111224445555444 45555554432 11 12233334422 3345667788889999999999999
Q ss_pred EEEecC
Q 010390 345 YVWQVN 350 (512)
Q Consensus 345 ~iw~~~ 350 (512)
.+|...
T Consensus 341 ~~Wk~~ 346 (376)
T KOG1188|consen 341 QAWKVE 346 (376)
T ss_pred EEEecC
Confidence 999863
No 181
>KOG0290 consensus Conserved WD40 repeat-containing protein AN11 [Function unknown]
Probab=99.83 E-value=5.6e-19 Score=146.34 Aligned_cols=247 Identities=15% Similarity=0.208 Sum_probs=178.4
Q ss_pred CccCCcceEEEEEecCCC-----cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCC
Q 010390 48 GEETPPLAVSFCKTSKNS-----HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDT 121 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~-----~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~ 121 (512)
.|.-|++.+.| .|+. ++|||++ | .+|||.+........... .-....-..+..++++..|+. +-+
T Consensus 94 d~~YP~tK~~w---iPd~~g~~pdlLATs~-D-~LRlWri~~ee~~~~~~~----~L~~~kns~~~aPlTSFDWne~dp~ 164 (364)
T KOG0290|consen 94 DHPYPVTKLMW---IPDSKGVYPDLLATSS-D-FLRLWRIGDEESRVELQS----VLNNNKNSEFCAPLTSFDWNEVDPN 164 (364)
T ss_pred CCCCCccceEe---cCCccccCcchhhccc-C-eEEEEeccCcCCceehhh----hhccCcccccCCcccccccccCCcc
Confidence 58889999999 5554 4677765 3 799999874322111100 000111234667999999998 677
Q ss_pred EEEEEeCCCcEEEEeCCCCee---eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 122 NILTASGDQTIKIWDAEKKKC---TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~---~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
+|.+++-|-+..|||++++.. ...+..|...|..|+|...+.+.|++++.||.||+||++..+.......
T Consensus 165 ~igtSSiDTTCTiWdie~~~~~~vkTQLIAHDKEV~DIaf~~~s~~~FASvgaDGSvRmFDLR~leHSTIIYE------- 237 (364)
T KOG0290|consen 165 LIGTSSIDTTCTIWDIETGVSGTVKTQLIAHDKEVYDIAFLKGSRDVFASVGADGSVRMFDLRSLEHSTIIYE------- 237 (364)
T ss_pred eeEeecccCeEEEEEEeeccccceeeEEEecCcceeEEEeccCccceEEEecCCCcEEEEEecccccceEEec-------
Confidence 888999999999999998733 5567789999999999998888999999999999999997653322111
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
-.....+...++|+++.. ++++.......|.|.|++....... .+..|...|
T Consensus 238 -----------------~p~~~~pLlRLswnkqDpnymATf~~dS~~V~iLDiR~P~tpva----------~L~~H~a~V 290 (364)
T KOG0290|consen 238 -----------------DPSPSTPLLRLSWNKQDPNYMATFAMDSNKVVILDIRVPCTPVA----------RLRNHQASV 290 (364)
T ss_pred -----------------CCCCCCcceeeccCcCCchHHhhhhcCCceEEEEEecCCCccee----------hhhcCcccc
Confidence 111145788899988655 4555555567899999998766554 688999999
Q ss_pred eEEEeCCC-CCEEEEEecCCeEEEEEcccCCCC----ceEeeeeceeceeEEEEEECC-CCCEEEEecC
Q 010390 278 SSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKG----PIQHFSGCRIESFYVKSEICP-NASHILSGSS 340 (512)
Q Consensus 278 ~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~----~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~ 340 (512)
+.++|.|. ...|++++.|..+.+||+...... ++..+. ....+..+.|++ .+.+|+.+..
T Consensus 291 NgIaWaPhS~~hictaGDD~qaliWDl~q~~~~~~~dPilay~---a~~EVNqi~Ws~~~~Dwiai~~~ 356 (364)
T KOG0290|consen 291 NGIAWAPHSSSHICTAGDDCQALIWDLQQMPRENGEDPILAYT---AGGEVNQIQWSSSQPDWIAICFG 356 (364)
T ss_pred cceEecCCCCceeeecCCcceEEEEecccccccCCCCchhhhh---ccceeeeeeecccCCCEEEEEec
Confidence 99999995 458999999999999999765431 222222 234577799996 4677877664
No 182
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.83 E-value=5.5e-20 Score=172.82 Aligned_cols=288 Identities=18% Similarity=0.293 Sum_probs=210.7
Q ss_pred eecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 44 VEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 44 ~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..+.||.+.|+|+.| ...|.++++|+.|..|+||..++... +....||.+.|+.++.+.+..++
T Consensus 184 krLlgH~naVyca~f---Drtg~~Iitgsdd~lvKiwS~et~~~-------------lAs~rGhs~ditdlavs~~n~~i 247 (1113)
T KOG0644|consen 184 KRLLGHRNAVYCAIF---DRTGRYIITGSDDRLVKIWSMETARC-------------LASCRGHSGDITDLAVSSNNTMI 247 (1113)
T ss_pred HHHHhhhhheeeeee---ccccceEeecCccceeeeeeccchhh-------------hccCCCCccccchhccchhhhhh
Confidence 457899999999999 88999999999999999999877643 78889999999999999999999
Q ss_pred EEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 124 LTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 124 ~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++++.|..|++|.+.++.++..+.+|++.|++|+|+|.- +.+.||++++||.+-.-.......
T Consensus 248 aaaS~D~vIrvWrl~~~~pvsvLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~~~~y~prp------------ 310 (1113)
T KOG0644|consen 248 AAASNDKVIRVWRLPDGAPVSVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLEPRIYVPRP------------ 310 (1113)
T ss_pred hhcccCceEEEEecCCCchHHHHhccccceeeeccCccc-----cCCCCCceEeccccccccccCCCC------------
Confidence 999999999999999999999999999999999999943 778899999999881111110000
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
........+.++.|..++..+++ |+.|+.-..|.+....... ..+.-+..+
T Consensus 311 -----------~~~~~~~~~~s~~~~~~~~~f~T-gs~d~ea~n~e~~~l~~~~-----------------~~lif~t~s 361 (1113)
T KOG0644|consen 311 -----------LKFTEKDLVDSILFENNGDRFLT-GSRDGEARNHEFEQLAWRS-----------------NLLIFVTRS 361 (1113)
T ss_pred -----------CCcccccceeeeecccccccccc-ccCCcccccchhhHhhhhc-----------------cceEEEecc
Confidence 00011235666667667766666 6678877777665322111 111111111
Q ss_pred CC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE-EEecCCCCEEEEecCCCCCCCceecc
Q 010390 284 SN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI-LSGSSDGNAYVWQVNKPQADPIKLKS 361 (512)
Q Consensus 284 ~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l-~~g~~dg~i~iw~~~~~~~~~~~~~~ 361 (512)
.+ ..+.+++-.+-.+.+|++..+. ....+.++... +..+.++|-+..+ .+++.||...|||+-.+........+
T Consensus 362 sd~~~~~~~ar~~~~~~vwnl~~g~--l~H~l~ghsd~--~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~~g 437 (1113)
T KOG0644|consen 362 SDLSSIVVTARNDHRLCVWNLYTGQ--LLHNLMGHSDE--VYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYFIG 437 (1113)
T ss_pred ccccccceeeeeeeEeeeeecccch--hhhhhcccccc--eeeeeecCCCcHhhhhccCCCceEeeecccCCcceeeecc
Confidence 12 1355666677889999986643 33444455433 4447888866555 68899999999999888765555566
Q ss_pred ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 362 HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 362 h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
| +.+...+|+++| ..++....-|.++|.....++..
T Consensus 438 h-~kl~d~kFSqdg-ts~~lsd~hgql~i~g~gqs~s~ 473 (1113)
T KOG0644|consen 438 H-GKLVDGKFSQDG-TSIALSDDHGQLYILGTGQSKSQ 473 (1113)
T ss_pred c-ceeeccccCCCC-ceEecCCCCCceEEeccCCCccc
Confidence 5 566777899999 77777777799999987666543
No 183
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.83 E-value=9.8e-19 Score=147.43 Aligned_cols=304 Identities=14% Similarity=0.229 Sum_probs=201.2
Q ss_pred EEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEEEe
Q 010390 58 FCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKIWD 136 (512)
Q Consensus 58 ~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd 136 (512)
+|+|||+|+++|+...- .+.|-|.++-+. ..+..--..|.-+.|..|..+++ ....|+.|.+|+
T Consensus 13 ~c~fSp~g~yiAs~~~y-rlviRd~~tlq~--------------~qlf~cldki~yieW~ads~~ilC~~yk~~~vqvws 77 (447)
T KOG4497|consen 13 FCSFSPCGNYIASLSRY-RLVIRDSETLQL--------------HQLFLCLDKIVYIEWKADSCHILCVAYKDPKVQVWS 77 (447)
T ss_pred ceeECCCCCeeeeeeee-EEEEeccchhhH--------------HHHHHHHHHhhheeeeccceeeeeeeeccceEEEEE
Confidence 56779999999999754 788888766432 12222246788899999888777 456688999999
Q ss_pred CCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc------
Q 010390 137 AEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS------ 210 (512)
Q Consensus 137 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~------ 210 (512)
+...+-...+.....++.+++|+|+|..+|.+...|-.|.+|.+.+.................+.+.+......
T Consensus 78 l~Qpew~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTVWSL~t~~~~~~~~pK~~~kg~~f~~dg~f~ai~sRrDCk 157 (447)
T KOG4497|consen 78 LVQPEWYCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITVWSLNTQKGYLLPHPKTNVKGYAFHPDGQFCAILSRRDCK 157 (447)
T ss_pred eecceeEEEeccCCCcceeeeECCCcceEeeeecceeEEEEEEeccceeEEecccccCceeEEECCCCceeeeeecccHH
Confidence 99999888998888899999999999888888889999999999887654433333322223333322221111
Q ss_pred -----------ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 211 -----------KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 211 -----------~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
..+..+....-..+.+.|+|||..+++ ||.--.-.+. ......++..
T Consensus 158 dyv~i~~c~~W~ll~~f~~dT~DltgieWsPdg~~laV----------wd~~Leykv~------------aYe~~lG~k~ 215 (447)
T KOG4497|consen 158 DYVQISSCKAWILLKEFKLDTIDLTGIEWSPDGNWLAV----------WDNVLEYKVY------------AYERGLGLKF 215 (447)
T ss_pred HHHHHHhhHHHHHHHhcCCCcccccCceECCCCcEEEE----------ecchhhheee------------eeeeccceeE
Confidence 111223334455677888888776665 3221111100 1111245888
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccC-----------------------------------------------C-C---
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQL-----------------------------------------------D-K--- 308 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~-----------------------------------------------~-~--- 308 (512)
++|+|.+++|++|+.|+.+++.+--+. . .
T Consensus 216 v~wsP~~qflavGsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke~~~~~ql~~~cLsf~p~~~~a~~~~~se~~ 295 (447)
T KOG4497|consen 216 VEWSPCNQFLAVGSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKETFSIVQLLHHCLSFTPTDLEAHIWEESETI 295 (447)
T ss_pred EEeccccceEEeeccchhhhhhceeeeeehhhhccchhccCchhhhhhhhhcchhhhcccccccCCCccccCccccchhh
Confidence 999999999999999999998771000 0 0
Q ss_pred -----Cc--eEeee----eceeceeEEEEEECCCCCEEEEecCC--CCEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390 309 -----GP--IQHFS----GCRIESFYVKSEICPNASHILSGSSD--GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 309 -----~~--~~~~~----~~~~~~~~~~~~~s~~~~~l~~g~~d--g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 375 (512)
.+ +..+. .......+..++|++|..++++-.+. +.+-+||++..+.. ..+ ....+|....|.|..
T Consensus 296 YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW~Wdlq~l~l~-avL-iQk~piraf~WdP~~ 373 (447)
T KOG4497|consen 296 YEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALWLWDLQNLKLH-AVL-IQKHPIRAFEWDPGR 373 (447)
T ss_pred hhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEEEEechhhhhh-hhh-hhccceeEEEeCCCC
Confidence 00 00000 00011234468999999999887653 56999999886653 222 245689999999998
Q ss_pred CCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 376 AGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 376 ~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+ .|+.+.....+++|......++..
T Consensus 374 p-rL~vctg~srLY~W~psg~~~V~v 398 (447)
T KOG4497|consen 374 P-RLVVCTGKSRLYFWAPSGPRVVGV 398 (447)
T ss_pred c-eEEEEcCCceEEEEcCCCceEEec
Confidence 4 566665566799999988666665
No 184
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.83 E-value=2e-18 Score=163.64 Aligned_cols=261 Identities=15% Similarity=0.223 Sum_probs=190.0
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE--EEEEe
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN--ILTAS 127 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~--l~s~~ 127 (512)
...|.++.|++|+| +++|.|..+|.|.+||+....... ....-.....|..+|+.+.|..+..- +++++
T Consensus 242 ~s~v~~~~f~p~~p--~ll~gG~y~GqV~lWD~~~~~~~~-------~s~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s 312 (555)
T KOG1587|consen 242 PSEVTCLKFCPFDP--NLLAGGCYNGQVVLWDLRKGSDTP-------PSGLSALEVSHSEPVTAVVWLQNEHNTEFFSLS 312 (555)
T ss_pred CCceeEEEeccCCc--ceEEeeccCceEEEEEccCCCCCC-------CcccccccccCCcCeEEEEEeccCCCCceEEEe
Confidence 45688999987755 789999999999999998764310 01112233578999999999885444 99999
Q ss_pred CCCcEEEEeCCCCeee------eccc------CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 128 GDQTIKIWDAEKKKCT------GALM------GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~------~~~~------~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
.||.|..|+++.-... .... .-...+++++|.+..++.|+.|+.+|.|.--+-........
T Consensus 313 sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~~p~~FiVGTe~G~v~~~~r~g~~~~~~------- 385 (555)
T KOG1587|consen 313 SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPTDPNHFIVGTEEGKVYKGCRKGYTPAPE------- 385 (555)
T ss_pred cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccCCCceEEEEcCCcEEEEEeccCCccccc-------
Confidence 9999999987653221 1111 12246899999999999999999999987743332221110
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
...+.......|.+.|+++.++|-+..++.+++ |-.++||.......... ....+..
T Consensus 386 ------------~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~g-DW~vriWs~~~~~~Pl~----------~~~~~~~ 442 (555)
T KOG1587|consen 386 ------------VSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVG-DWTVRIWSEDVIASPLL----------SLDSSPD 442 (555)
T ss_pred ------------ccccccccccccCcceEeeecCCCccceeeeec-cceeEeccccCCCCcch----------hhhhccc
Confidence 011223355678899999999999888887775 99999999873322222 3445556
Q ss_pred CeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 276 GISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 276 ~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
.+++++|+|.. ..++++..||.|.+||+......++....-. ......+.|+++|+.|++|...|.+++|++..
T Consensus 443 ~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv~s~~~~--~~~l~~~~~s~~g~~lavGd~~G~~~~~~l~~ 517 (555)
T KOG1587|consen 443 YVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPVLSQKVC--SPALTRVRWSPNGKLLAVGDANGTTHILKLSE 517 (555)
T ss_pred eeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCccccccc--ccccceeecCCCCcEEEEecCCCcEEEEEcCc
Confidence 69999999975 4777888899999999987766666555433 34456688999999999999999999999964
No 185
>KOG0644 consensus Uncharacterized conserved protein, contains WD40 repeat and BROMO domains [General function prediction only]
Probab=99.82 E-value=2.7e-20 Score=174.83 Aligned_cols=254 Identities=20% Similarity=0.313 Sum_probs=199.9
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
+.++.+.+|.++|+|+.|...|.++++|+.|..++||..+++.+.....||.+.|+.++.+..+ .++++++.|..|++|
T Consensus 181 k~ikrLlgH~naVyca~fDrtg~~Iitgsdd~lvKiwS~et~~~lAs~rGhs~ditdlavs~~n-~~iaaaS~D~vIrvW 259 (1113)
T KOG0644|consen 181 KNIKRLLGHRNAVYCAIFDRTGRYIITGSDDRLVKIWSMETARCLASCRGHSGDITDLAVSSNN-TMIAAASNDKVIRVW 259 (1113)
T ss_pred HHHHHHHhhhhheeeeeeccccceEeecCccceeeeeeccchhhhccCCCCccccchhccchhh-hhhhhcccCceEEEE
Confidence 4467788999999999999999999999999999999999999999999999999999998876 899999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
.+..+..+ ..+.+|.+.|++++|+|-. +.+.||++++||.+-. ....
T Consensus 260 rl~~~~pv---------------------------svLrghtgavtaiafsP~~-----sss~dgt~~~wd~r~~-~~~y 306 (1113)
T KOG0644|consen 260 RLPDGAPV---------------------------SVLRGHTGAVTAIAFSPRA-----SSSDDGTCRIWDARLE-PRIY 306 (1113)
T ss_pred ecCCCchH---------------------------HHHhccccceeeeccCccc-----cCCCCCceEecccccc-cccc
Confidence 99876543 3667899999999999975 3558999999999821 1111
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-CCEEEE
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-ASHILS 337 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-~~~l~~ 337 (512)
...| .......-+.++.+..++..+++++.|+.-..|.+........... + +..+.+ ..+.++
T Consensus 307 ~prp------~~~~~~~~~~s~~~~~~~~~f~Tgs~d~ea~n~e~~~l~~~~~~li-------f---~t~ssd~~~~~~~ 370 (1113)
T KOG0644|consen 307 VPRP------LKFTEKDLVDSILFENNGDRFLTGSRDGEARNHEFEQLAWRSNLLI-------F---VTRSSDLSSIVVT 370 (1113)
T ss_pred CCCC------CCcccccceeeeeccccccccccccCCcccccchhhHhhhhccceE-------E---Eecccccccccee
Confidence 1111 1122224577788888899999999999988888644222111110 0 111112 245566
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
+-.+..+++|++.++.. ...+.+|...+..+.++|-++....+++.||...|||+-.|..++...
T Consensus 371 ar~~~~~~vwnl~~g~l-~H~l~ghsd~~yvLd~Hpfn~ri~msag~dgst~iwdi~eg~pik~y~ 435 (1113)
T KOG0644|consen 371 ARNDHRLCVWNLYTGQL-LHNLMGHSDEVYVLDVHPFNPRIAMSAGYDGSTIIWDIWEGIPIKHYF 435 (1113)
T ss_pred eeeeeEeeeeecccchh-hhhhcccccceeeeeecCCCcHhhhhccCCCceEeeecccCCcceeee
Confidence 77788899999999876 467889999999999999998888999999999999999988777644
No 186
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.82 E-value=5.3e-18 Score=166.17 Aligned_cols=312 Identities=13% Similarity=0.173 Sum_probs=211.2
Q ss_pred eeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEE
Q 010390 37 TEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCW 116 (512)
Q Consensus 37 ~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~ 116 (512)
...|.++.+++.|...|..++.. ++++.++++|+.||+|++||........ ...+-..++..-.+.+.++..
T Consensus 1035 ~p~G~lVAhL~Ehs~~v~k~a~s--~~~~s~FvsgS~DGtVKvW~~~k~~~~~------~s~rS~ltys~~~sr~~~vt~ 1106 (1431)
T KOG1240|consen 1035 NPRGILVAHLHEHSSAVIKLAVS--SEHTSLFVSGSDDGTVKVWNLRKLEGEG------GSARSELTYSPEGSRVEKVTM 1106 (1431)
T ss_pred CccceEeehhhhccccccceeec--CCCCceEEEecCCceEEEeeehhhhcCc------ceeeeeEEEeccCCceEEEEe
Confidence 56789999999999999977773 5666999999999999999987543211 111223334445678999999
Q ss_pred ecCCCEEEEEeCCCcEEEEeCCCC-------eeeecccCcC-CCE-EEEEeeCCCCC-eEEEEeCCCcEEEEeCCCCCCC
Q 010390 117 IKEDTNILTASGDQTIKIWDAEKK-------KCTGALMGHT-GSI-KSLCSHPTNSD-ILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 117 s~~~~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~-~~v-~~l~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
.+.++.+|.++.||.|++.+++.. .+.+....+. +.+ ..-+|...... .++.+...+.|..||++.....
T Consensus 1107 ~~~~~~~Av~t~DG~v~~~~id~~~~~~~~~~~~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv~~D~r~~~~~ 1186 (1431)
T KOG1240|consen 1107 CGNGDQFAVSTKDGSVRVLRIDHYNVSKRVATQVRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIVSWDTRMRHDA 1186 (1431)
T ss_pred ccCCCeEEEEcCCCeEEEEEccccccccceeeeeecccccCCCceEEeecccccccceeEEEEEeccceEEecchhhhhH
Confidence 999999999999999999998762 1122222222 233 33334333323 7888888899999999865543
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
... ......+.|++++.+|.+..+++ |+..|.+.+||++-...+..-..
T Consensus 1187 w~l-------------------------k~~~~hG~vTSi~idp~~~Wlvi-Gts~G~l~lWDLRF~~~i~sw~~----- 1235 (1431)
T KOG1240|consen 1187 WRL-------------------------KNQLRHGLVTSIVIDPWCNWLVI-GTSRGQLVLWDLRFRVPILSWEH----- 1235 (1431)
T ss_pred Hhh-------------------------hcCccccceeEEEecCCceEEEE-ecCCceEEEEEeecCceeecccC-----
Confidence 322 22344678999999999997776 77899999999997665544322
Q ss_pred cccccccccCeeEEEeCCC---CCEEEEEe--cCCeEEEEEcccCCCCceEeee-ec--------------eeceeEEEE
Q 010390 267 SSAKETRLHGISSLSQDSN---GVFLTASC--MDHRIYLYNVLQLDKGPIQHFS-GC--------------RIESFYVKS 326 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~---~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~-~~--------------~~~~~~~~~ 326 (512)
.+..+++.+..+|- ....++++ ..+.|.+|++.++....+.... +. +........
T Consensus 1236 -----P~~~~i~~v~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~ 1310 (1431)
T KOG1240|consen 1236 -----PARAPIRHVWLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQTVLWASDGAPILSYALPSNDARKPDSLAGISC 1310 (1431)
T ss_pred -----cccCCcceEEeeccCCCCceEEEecccCCCceeeeecccCcceEEEEcCCCCcchhhhcccccCCCCCcccceee
Confidence 22255777776653 34555444 5688999999876444333222 10 111112223
Q ss_pred EECCCCCEEEEecCCCCEEEEecCCCCCC----------------------------C-------------------c--
Q 010390 327 EICPNASHILSGSSDGNAYVWQVNKPQAD----------------------------P-------------------I-- 357 (512)
Q Consensus 327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~----------------------------~-------------------~-- 357 (512)
.+..-+.++.+|+.|..|+.||....... . .
T Consensus 1311 ~~~~~~~~~ltggsd~kIR~wD~~~p~~ss~~~~~~s~~~~~~~~s~~~~~i~~~~~i~e~i~~~~tv~~t~~~~~~~~~ 1390 (1431)
T KOG1240|consen 1311 GVCEKNGFLLTGGSDMKIRKWDPTRPEISSYAVPGPSTSYSTNSESYDLSTIPGSQFIDEFIIYQQTVGLTEALRENQKL 1390 (1431)
T ss_pred ecccCCceeeecCCccceeeccCCCcccccccccCccccccccchhccccccCCCccchhhhhhhhhcCchhhccccccc
Confidence 44445678899999999999997642211 0 0
Q ss_pred ------eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 358 ------KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 358 ------~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.-..|..+|+++++......+|++++.||.|+||.
T Consensus 1391 ~~~~~~ps~~H~d~Itdma~~~~~q~llvs~s~dG~IkiWk 1431 (1431)
T KOG1240|consen 1391 RPGPSDPSTYHHDPITDMATLKSEQPLLVSSSRDGVIKIWK 1431 (1431)
T ss_pred ccCCCCCcccccchhhhhhhhccCccEEEEecCCCeeeecC
Confidence 01247788999998776656999999999999994
No 187
>COG2319 FOG: WD40 repeat [General function prediction only]
Probab=99.82 E-value=8.6e-17 Score=156.54 Aligned_cols=293 Identities=27% Similarity=0.470 Sum_probs=220.9
Q ss_pred eeEeecCCccCCcceEEEEEecCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC
Q 010390 41 AVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE 119 (512)
Q Consensus 41 ~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~ 119 (512)
.......+|...|.+++| +|++.++++++. |+.+++|+..... .+..+.+|...|.+++|+|+
T Consensus 146 ~~~~~~~~~~~~v~~~~~---~~~~~~~~~~~~~~~~~~~~~~~~~~-------------~~~~~~~~~~~v~~~~~~~~ 209 (466)
T COG2319 146 KLIRTLEGHSESVTSLAF---SPDGKLLASGSSLDGTIKLWDLRTGK-------------PLSTLAGHTDPVSSLAFSPD 209 (466)
T ss_pred eEEEEEecCcccEEEEEE---CCCCCEEEecCCCCCceEEEEcCCCc-------------eEEeeccCCCceEEEEEcCC
Confidence 555677889999999999 999999999885 9999999997632 26667779999999999999
Q ss_pred CC-EEEEEeCCCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 120 DT-NILTASGDQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 120 ~~-~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
+. .+++++.|+.|++||...+.... .+.+|...+ ...|++++ ..+++++.|+.+++|+.......
T Consensus 210 ~~~~~~~~~~d~~i~~wd~~~~~~~~~~~~~~~~~~-~~~~~~~~-~~~~~~~~d~~~~~~~~~~~~~~----------- 276 (466)
T COG2319 210 GGLLIASGSSDGTIRLWDLSTGKLLRSTLSGHSDSV-VSSFSPDG-SLLASGSSDGTIRLWDLRSSSSL----------- 276 (466)
T ss_pred cceEEEEecCCCcEEEEECCCCcEEeeecCCCCcce-eEeECCCC-CEEEEecCCCcEEEeeecCCCcE-----------
Confidence 98 55565899999999988888777 688888775 44899988 88889999999999999865430
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
......|...+.++.|.|++..+++ ++.|+.+.+||..+........ ...|...+
T Consensus 277 ---------------~~~~~~~~~~v~~~~~~~~~~~~~~-~~~d~~~~~~~~~~~~~~~~~~---------~~~~~~~~ 331 (466)
T COG2319 277 ---------------LRTLSGHSSSVLSVAFSPDGKLLAS-GSSDGTVRLWDLETGKLLSSLT---------LKGHEGPV 331 (466)
T ss_pred ---------------EEEEecCCccEEEEEECCCCCEEEE-eeCCCcEEEEEcCCCceEEEee---------ecccCCce
Confidence 0011355778999999998888888 6677889999888776554321 12444468
Q ss_pred eEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE-ecCCCCEEEEecCCCCCC
Q 010390 278 SSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS-GSSDGNAYVWQVNKPQAD 355 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~-g~~dg~i~iw~~~~~~~~ 355 (512)
..+.+.+++..++.+ ..|+.+.+|++.... ........ ..+..+.+++ ...++. +..++.+.+|+.......
T Consensus 332 ~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~~--~~~~~~~~---~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~ 405 (466)
T COG2319 332 SSLSFSPDGSLLVSGGSDDGTIRLWDLRTGK--PLKTLEGH---SNVLSVSFSP-DGRVVSSGSTDGTVRLWDLSTGSLL 405 (466)
T ss_pred EEEEECCCCCEEEEeecCCCcEEeeecCCCc--eeEEecCC---ceEEEEEECC-CCCEEEEecCCCceEEEecccCeee
Confidence 888884333555555 678899999986644 22222111 1156678888 544444 688999999999877653
Q ss_pred CceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 356 PIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
. ....+...+....+.+++ ..+++++.++.+++|+...
T Consensus 406 ~-~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~ 443 (466)
T COG2319 406 R-NLDGHTSRVTSLDFSPDG-KSLASGSSDNTIRLWDLKT 443 (466)
T ss_pred e-eccCCCCcEEEEEECCCC-cEEEEecCCCcEEEEeccC
Confidence 2 222222789999999998 7899999999999999988
No 188
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.82 E-value=1.1e-17 Score=135.13 Aligned_cols=289 Identities=13% Similarity=0.153 Sum_probs=192.1
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..|++-++ +|.+++|++|..+|.|.+..++....... ......++...++|.++|+.++|. ..+|++|+ ||
T Consensus 11 ~tvf~qa~---sp~~~~l~agn~~G~iav~sl~sl~s~sa---~~~gk~~iv~eqahdgpiy~~~f~--d~~Lls~g-dG 81 (325)
T KOG0649|consen 11 NTVFAQAI---SPSKQYLFAGNLFGDIAVLSLKSLDSGSA---EPPGKLKIVPEQAHDGPIYYLAFH--DDFLLSGG-DG 81 (325)
T ss_pred HHHHHHhh---CCcceEEEEecCCCeEEEEEehhhhcccc---CCCCCcceeeccccCCCeeeeeee--hhheeecc-Cc
Confidence 34555566 99999999999999999999875422111 123345566779999999999998 45777775 59
Q ss_pred cEEEEeCCCCee------eecc--cCcC-----CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 131 TIKIWDAEKKKC------TGAL--MGHT-----GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 131 ~i~iwd~~~~~~------~~~~--~~h~-----~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
.|+=|.++.... +... ..|. -.|+++...|.. +-++.++.|+.++.||+++++.
T Consensus 82 ~V~gw~W~E~~es~~~K~lwe~~~P~~~~~~evPeINam~ldP~e-nSi~~AgGD~~~y~~dlE~G~i------------ 148 (325)
T KOG0649|consen 82 LVYGWEWNEEEESLATKRLWEVKIPMQVDAVEVPEINAMWLDPSE-NSILFAGGDGVIYQVDLEDGRI------------ 148 (325)
T ss_pred eEEEeeehhhhhhccchhhhhhcCccccCcccCCccceeEeccCC-CcEEEecCCeEEEEEEecCCEE------------
Confidence 999998764322 1111 1122 368999999987 4455555899999999997653
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccc-ccccC
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE-TRLHG 276 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~ 276 (512)
.+.+++|...+.++.--.....+++ |++||++++||+++.+.......-.... ... .-...
T Consensus 149 ---------------~r~~rGHtDYvH~vv~R~~~~qils-G~EDGtvRvWd~kt~k~v~~ie~yk~~~--~lRp~~g~w 210 (325)
T KOG0649|consen 149 ---------------QREYRGHTDYVHSVVGRNANGQILS-GAEDGTVRVWDTKTQKHVSMIEPYKNPN--LLRPDWGKW 210 (325)
T ss_pred ---------------EEEEcCCcceeeeeeecccCcceee-cCCCccEEEEeccccceeEEeccccChh--hcCcccCce
Confidence 3477899999999988555556665 7799999999999998876543211111 111 12334
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
|.+++.+ ..+|++|+ .-.+.+|.++..+...+..+.++.. .+.|. .+.+++++..+.|.-|.+...-.
T Consensus 211 igala~~--edWlvCGg-Gp~lslwhLrsse~t~vfpipa~v~-----~v~F~--~d~vl~~G~g~~v~~~~l~Gvl~-- 278 (325)
T KOG0649|consen 211 IGALAVN--EDWLVCGG-GPKLSLWHLRSSESTCVFPIPARVH-----LVDFV--DDCVLIGGEGNHVQSYTLNGVLQ-- 278 (325)
T ss_pred eEEEecc--CceEEecC-CCceeEEeccCCCceEEEeccccee-----Eeeee--cceEEEeccccceeeeeeccEEE--
Confidence 6666665 45777764 5689999999877777776666533 24443 35677888778899998764322
Q ss_pred ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390 357 IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391 (512)
Q Consensus 357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 391 (512)
..........++..|+..--++|-.++..+.+.|.
T Consensus 279 a~ip~~s~~c~s~s~~~~p~k~~s~ag~s~~~~i~ 313 (325)
T KOG0649|consen 279 ANIPVESTACYSASWQTSPIKFISIAGFSNKLHIL 313 (325)
T ss_pred EeccCCccceeeecccCCceEEEEecccceeeeee
Confidence 12222233455565654332455556666667665
No 189
>KOG1538 consensus Uncharacterized conserved protein WDR10, contains WD40 repeats [General function prediction only]
Probab=99.82 E-value=9.4e-19 Score=160.76 Aligned_cols=263 Identities=15% Similarity=0.203 Sum_probs=200.2
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 189 (512)
.|+.++|-|||..|+.+.. ..+.|||.++|..+.++++|++.|+|++|+.+| ..+++|+.|..|.+|+..-...
T Consensus 14 ci~d~afkPDGsqL~lAAg-~rlliyD~ndG~llqtLKgHKDtVycVAys~dG-krFASG~aDK~VI~W~~klEG~---- 87 (1081)
T KOG1538|consen 14 CINDIAFKPDGTQLILAAG-SRLLVYDTSDGTLLQPLKGHKDTVYCVAYAKDG-KRFASGSADKSVIIWTSKLEGI---- 87 (1081)
T ss_pred chheeEECCCCceEEEecC-CEEEEEeCCCcccccccccccceEEEEEEccCC-ceeccCCCceeEEEecccccce----
Confidence 8999999999999998754 459999999999999999999999999999998 9999999999999998653322
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
....|...|.|+.|+|-...+++++- ...-+|........
T Consensus 88 -------------------------LkYSH~D~IQCMsFNP~~h~LasCsL--sdFglWS~~qK~V~------------- 127 (1081)
T KOG1538|consen 88 -------------------------LKYSHNDAIQCMSFNPITHQLASCSL--SDFGLWSPEQKSVS------------- 127 (1081)
T ss_pred -------------------------eeeccCCeeeEeecCchHHHhhhcch--hhccccChhhhhHH-------------
Confidence 22367889999999999999988653 44778877654432
Q ss_pred ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC-----CCEEEEecCCCCE
Q 010390 270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN-----ASHILSGSSDGNA 344 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~-----~~~l~~g~~dg~i 344 (512)
.......+.+.+|..||++|+.|-.+|+|.+-+-...+. ...-.....+..+.+++|+|. ...+++.....++
T Consensus 128 K~kss~R~~~CsWtnDGqylalG~~nGTIsiRNk~gEek--~~I~Rpgg~Nspiwsi~~~p~sg~G~~di~aV~DW~qTL 205 (1081)
T KOG1538|consen 128 KHKSSSRIICCSWTNDGQYLALGMFNGTISIRNKNGEEK--VKIERPGGSNSPIWSICWNPSSGEGRNDILAVADWGQTL 205 (1081)
T ss_pred hhhhheeEEEeeecCCCcEEEEeccCceEEeecCCCCcc--eEEeCCCCCCCCceEEEecCCCCCCccceEEEEecccee
Confidence 222334588999999999999999999999987543222 222222233567889999996 3578888888899
Q ss_pred EEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCccccceeeeeccchhccccc
Q 010390 345 YVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFM 424 (512)
Q Consensus 345 ~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 424 (512)
.+|.+...... .-..-.-...|+.+.++| .+++.||.|+.++++.-+.-.+ .+ ......++|.+...|....++
T Consensus 206 SFy~LsG~~Ig--k~r~L~FdP~CisYf~NG-Ey~LiGGsdk~L~~fTR~GvrL-GT--vg~~D~WIWtV~~~PNsQ~v~ 279 (1081)
T KOG1538|consen 206 SFYQLSGKQIG--KDRALNFDPCCISYFTNG-EYILLGGSDKQLSLFTRDGVRL-GT--VGEQDSWIWTVQAKPNSQYVV 279 (1081)
T ss_pred EEEEecceeec--ccccCCCCchhheeccCC-cEEEEccCCCceEEEeecCeEE-ee--ccccceeEEEEEEccCCceEE
Confidence 99988654321 122223346689999999 8999999999999997654332 22 233678899988888777665
Q ss_pred CC
Q 010390 425 NG 426 (512)
Q Consensus 425 ~~ 426 (512)
.|
T Consensus 280 ~G 281 (1081)
T KOG1538|consen 280 VG 281 (1081)
T ss_pred EE
Confidence 44
No 190
>KOG1445 consensus Tumor-specific antigen (contains WD repeats) [Cytoskeleton]
Probab=99.81 E-value=6.9e-19 Score=160.70 Aligned_cols=265 Identities=17% Similarity=0.236 Sum_probs=186.9
Q ss_pred CCcEEEE--eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCC
Q 010390 64 NSHIFAV--SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKK 140 (512)
Q Consensus 64 ~~~~lat--g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~ 140 (512)
+..++|+ .+.-|.|-||+++..... ....+-. ......|+.+.|.| |.+.|+.++.||.|++|.+..+
T Consensus 590 n~~rvAVPL~g~gG~iai~el~~PGrL--------PDgv~p~-l~Ngt~vtDl~WdPFD~~rLAVa~ddg~i~lWr~~a~ 660 (1012)
T KOG1445|consen 590 NNKRVAVPLAGSGGVIAIYELNEPGRL--------PDGVMPG-LFNGTLVTDLHWDPFDDERLAVATDDGQINLWRLTAN 660 (1012)
T ss_pred ccceEEEEecCCCceEEEEEcCCCCCC--------Ccccccc-cccCceeeecccCCCChHHeeecccCceEEEEEeccC
Confidence 4556666 466789999999754211 0011111 12456899999999 8889999999999999998764
Q ss_pred -------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390 141 -------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV 213 (512)
Q Consensus 141 -------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (512)
.+...+..|...|+++.|+|--.+.|++++.|-+|++||+.+.....
T Consensus 661 gl~e~~~tPe~~lt~h~eKI~slRfHPLAadvLa~asyd~Ti~lWDl~~~~~~~-------------------------- 714 (1012)
T KOG1445|consen 661 GLPENEMTPEKILTIHGEKITSLRFHPLAADVLAVASYDSTIELWDLANAKLYS-------------------------- 714 (1012)
T ss_pred CCCcccCCcceeeecccceEEEEEecchhhhHhhhhhccceeeeeehhhhhhhh--------------------------
Confidence 23456788999999999999888899999999999999998765433
Q ss_pred eecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe
Q 010390 214 SRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC 293 (512)
Q Consensus 214 ~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (512)
++.+|.+.|.+++|+|+|+.+++.| .||+|++|+.++.......... .....--.+.|.-+|+++++.+
T Consensus 715 -~l~gHtdqIf~~AWSpdGr~~AtVc-KDg~~rVy~Prs~e~pv~Eg~g---------pvgtRgARi~wacdgr~viv~G 783 (1012)
T KOG1445|consen 715 -RLVGHTDQIFGIAWSPDGRRIATVC-KDGTLRVYEPRSREQPVYEGKG---------PVGTRGARILWACDGRIVIVVG 783 (1012)
T ss_pred -eeccCcCceeEEEECCCCcceeeee-cCceEEEeCCCCCCCccccCCC---------CccCcceeEEEEecCcEEEEec
Confidence 6678999999999999999999987 7999999999987655432111 1112234677888999999887
Q ss_pred cC----CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEEecCCCCEEEEecCCCCCCCceeccccCC--e
Q 010390 294 MD----HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILSGSSDGNAYVWQVNKPQADPIKLKSHDGE--V 366 (512)
Q Consensus 294 ~d----g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~--v 366 (512)
.| ..|.+||.......++....-..... ..--.+.+|.+ ++++|-.|..|.+|.+-.....+..+..|..+ -
T Consensus 784 fdk~SeRQv~~Y~Aq~l~~~pl~t~~lDvaps-~LvP~YD~Ds~~lfltGKGD~~v~~yEv~~esPy~lpl~~f~sp~~h 862 (1012)
T KOG1445|consen 784 FDKSSERQVQMYDAQTLDLRPLYTQVLDVAPS-PLVPHYDYDSNVLFLTGKGDRFVNMYEVIYESPYLLPLAPFMSPVGH 862 (1012)
T ss_pred ccccchhhhhhhhhhhccCCcceeeeecccCc-cccccccCCCceEEEecCCCceEEEEEecCCCceeeecccccCCCcc
Confidence 66 57899998776655554432211111 11124556644 56788889999999987665543334333332 2
Q ss_pred EEEEeCCCC
Q 010390 367 TAVNWCPNE 375 (512)
Q Consensus 367 ~~v~~~~~~ 375 (512)
..++|.+..
T Consensus 863 qGl~fl~K~ 871 (1012)
T KOG1445|consen 863 QGLAFLQKL 871 (1012)
T ss_pred cceeeeccc
Confidence 346666544
No 191
>KOG1587 consensus Cytoplasmic dynein intermediate chain [Cytoskeleton]
Probab=99.81 E-value=8e-18 Score=159.65 Aligned_cols=249 Identities=17% Similarity=0.273 Sum_probs=176.5
Q ss_pred CcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 130 QTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 130 g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
+.+.||++... .+...+. -...|.++.|+|..+++++.|+.+|.|.+||++........
T Consensus 222 ~~~~vW~~~~p~~Pe~~~~-~~s~v~~~~f~p~~p~ll~gG~y~GqV~lWD~~~~~~~~~s------------------- 281 (555)
T KOG1587|consen 222 GVLLVWSLKNPNTPELVLE-SPSEVTCLKFCPFDPNLLAGGCYNGQVVLWDLRKGSDTPPS------------------- 281 (555)
T ss_pred ceEEEEecCCCCCceEEEe-cCCceeEEEeccCCcceEEeeccCceEEEEEccCCCCCCCc-------------------
Confidence 47999999877 3333343 55789999999999999999999999999999977653211
Q ss_pred ccccceecccccccEEEEEEeecCCE--EEEEeecCCeEEEEeccCccceecccCCCccc-cccccccccCeeEEEeCC-
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVS--IATASAVNSIVKFWDTRNLKAQITQAWPHAES-SSAKETRLHGISSLSQDS- 284 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~--l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~- 284 (512)
........|..++..+.|..+... +++++ .||.|..|+++............... .........+++++.|.+
T Consensus 282 --~ls~~~~sh~~~v~~vvW~~~~~~~~f~s~s-sDG~i~~W~~~~l~~P~e~~~~~~~~~~~~~~~~~~~~t~~~F~~~ 358 (555)
T KOG1587|consen 282 --GLSALEVSHSEPVTAVVWLQNEHNTEFFSLS-SDGSICSWDTDMLSLPVEGLLLESKKHKGQQSSKAVGATSLKFEPT 358 (555)
T ss_pred --ccccccccCCcCeEEEEEeccCCCCceEEEe-cCCcEeeeeccccccchhhcccccccccccccccccceeeEeeccC
Confidence 111133468889999999775554 77755 69999999988765533322211110 001223345689999987
Q ss_pred CCCEEEEEecCCeEEEEEcccCCCCceEeeeec----eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC----RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
+-..+++|+.+|.|..-+-..........+.++ .+...+..+.++|-+..++..+.|.+++||.......++..+.
T Consensus 359 ~p~~FiVGTe~G~v~~~~r~g~~~~~~~~~~~~~~~~~h~g~v~~v~~nPF~~k~fls~gDW~vriWs~~~~~~Pl~~~~ 438 (555)
T KOG1587|consen 359 DPNHFIVGTEEGKVYKGCRKGYTPAPEVSYKGHSTFITHIGPVYAVSRNPFYPKNFLSVGDWTVRIWSEDVIASPLLSLD 438 (555)
T ss_pred CCceEEEEcCCcEEEEEeccCCcccccccccccccccccCcceEeeecCCCccceeeeeccceeEeccccCCCCcchhhh
Confidence 456789999999998855433333321122221 2345678889999876655444499999999885555567777
Q ss_pred cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 361 SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 361 ~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.+...|++++|||..+..++++..||.|.+||+.......+
T Consensus 439 ~~~~~v~~vaWSptrpavF~~~d~~G~l~iWDLl~~~~~Pv 479 (555)
T KOG1587|consen 439 SSPDYVTDVAWSPTRPAVFATVDGDGNLDIWDLLQDDEEPV 479 (555)
T ss_pred hccceeeeeEEcCcCceEEEEEcCCCceehhhhhccccCCc
Confidence 78888999999999989999999999999999987765544
No 192
>KOG4227 consensus WD40 repeat protein [General function prediction only]
Probab=99.81 E-value=2.7e-18 Score=148.00 Aligned_cols=258 Identities=16% Similarity=0.220 Sum_probs=188.4
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC------Ceeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCC
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK------KKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDG 173 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~------~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg 173 (512)
.+.+.+|.+.|+++.|+.++++|++|+.|..+++|+++. .+++.... .|...|.|++|...+ ..+++|+.++
T Consensus 49 qKD~~~H~GCiNAlqFS~N~~~L~SGGDD~~~~~W~~de~~~~k~~KPI~~~~~~H~SNIF~L~F~~~N-~~~~SG~~~~ 127 (609)
T KOG4227|consen 49 QKDVREHTGCINALQFSHNDRFLASGGDDMHGRVWNVDELMVRKTPKPIGVMEHPHRSNIFSLEFDLEN-RFLYSGERWG 127 (609)
T ss_pred hhhhhhhccccceeeeccCCeEEeecCCcceeeeechHHHHhhcCCCCceeccCccccceEEEEEccCC-eeEecCCCcc
Confidence 345678999999999999999999999999999999853 35555443 355899999999866 8999999999
Q ss_pred cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc
Q 010390 174 SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL 253 (512)
Q Consensus 174 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~ 253 (512)
+|...|+++.+.+..... ....+.|..+..+|..+.++++. .++.|.+||.+..
T Consensus 128 ~VI~HDiEt~qsi~V~~~-------------------------~~~~~~VY~m~~~P~DN~~~~~t-~~~~V~~~D~Rd~ 181 (609)
T KOG4227|consen 128 TVIKHDIETKQSIYVANE-------------------------NNNRGDVYHMDQHPTDNTLIVVT-RAKLVSFIDNRDR 181 (609)
T ss_pred eeEeeecccceeeeeecc-------------------------cCcccceeecccCCCCceEEEEe-cCceEEEEeccCC
Confidence 999999998765443211 12234899999999988877754 8999999999976
Q ss_pred cceecccCCCccccccccccccCeeEEEeCCCC-CEEEEEecCCeEEEEEcccCCCCceEe--eeecee-ceeEEEEEEC
Q 010390 254 KAQITQAWPHAESSSAKETRLHGISSLSQDSNG-VFLTASCMDHRIYLYNVLQLDKGPIQH--FSGCRI-ESFYVKSEIC 329 (512)
Q Consensus 254 ~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-~~l~~~~~dg~i~i~d~~~~~~~~~~~--~~~~~~-~~~~~~~~~s 329 (512)
........ ..........+.|+|.. .+|++.+..+-+-+||++.......+. +.+.+. ....+.+.|+
T Consensus 182 ~~~~~~~~--------~AN~~~~F~t~~F~P~~P~Li~~~~~~~G~~~~D~R~~~~~~~~~~~~~~L~~~~~~~M~~~~~ 253 (609)
T KOG4227|consen 182 QNPISLVL--------PANSGKNFYTAEFHPETPALILVNSETGGPNVFDRRMQARPVYQRSMFKGLPQENTEWMGSLWS 253 (609)
T ss_pred CCCCceee--------ecCCCccceeeeecCCCceeEEeccccCCCCceeeccccchHHhhhccccCcccchhhhheeeC
Confidence 53332221 22233457788899854 577788888999999987644322211 111111 1224567899
Q ss_pred CCCCEEEEecCCCCEEEEecCCCCCCCceecccc-------CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 330 PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-------GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 330 ~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-------~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
|+|..+++--....-.+||+-+..+.+..+. |. ..+.+++|..| +.+++|+++-.|++|.+...
T Consensus 254 ~~G~Q~msiRR~~~P~~~D~~S~R~~V~k~D-~N~~GY~N~~T~KS~~F~~D--~~v~tGSD~~~i~~WklP~~ 324 (609)
T KOG4227|consen 254 PSGNQFMSIRRGKCPLYFDFISQRCFVLKSD-HNPNGYCNIKTIKSMTFIDD--YTVATGSDHWGIHIWKLPRA 324 (609)
T ss_pred CCCCeehhhhccCCCEEeeeecccceeEecc-CCCCcceeeeeeeeeeeecc--eeeeccCcccceEEEecCCC
Confidence 9999998877777778889887666433332 22 25778888876 46999999999999998653
No 193
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.81 E-value=1.9e-17 Score=139.25 Aligned_cols=220 Identities=13% Similarity=0.120 Sum_probs=166.2
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
...||+|-+| ++|+..+|++..+..|.||...+... -+...+++.|...|+.++|+|..+.|++|+.
T Consensus 9 ~~~pitchAw---n~drt~iAv~~~~~evhiy~~~~~~~----------w~~~htls~Hd~~vtgvdWap~snrIvtcs~ 75 (361)
T KOG1523|consen 9 LLEPITCHAW---NSDRTQIAVSPNNHEVHIYSMLGADL----------WEPAHTLSEHDKIVTGVDWAPKSNRIVTCSH 75 (361)
T ss_pred ccCceeeeee---cCCCceEEeccCCceEEEEEecCCCC----------ceeceehhhhCcceeEEeecCCCCceeEccC
Confidence 3567777777 99999999999999999999876531 2457889999999999999999999999999
Q ss_pred CCcEEEEeC-CCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 129 DQTIKIWDA-EKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 129 dg~i~iwd~-~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
|..-+||.. ..+ ++.-.+..++..++++.|+|.+ +.|++|+.-..|.||-++..+.--..
T Consensus 76 drnayVw~~~~~~~WkptlvLlRiNrAAt~V~WsP~e-nkFAVgSgar~isVcy~E~ENdWWVs---------------- 138 (361)
T KOG1523|consen 76 DRNAYVWTQPSGGTWKPTLVLLRINRAATCVKWSPKE-NKFAVGSGARLISVCYYEQENDWWVS---------------- 138 (361)
T ss_pred CCCccccccCCCCeeccceeEEEeccceeeEeecCcC-ceEEeccCccEEEEEEEecccceehh----------------
Confidence 999999998 333 3445556688999999999988 99999999999999987754321100
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee-------cccCCCccccccccccccCee
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI-------TQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~-------~~~~~~~~~~~~~~~~~~~i~ 278 (512)
....+.+...|+++.|+|++-.+++ |+.|+..+++..--..... -...|......+.....+.+.
T Consensus 139 -------KhikkPirStv~sldWhpnnVLlaa-Gs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh 210 (361)
T KOG1523|consen 139 -------KHIKKPIRSTVTSLDWHPNNVLLAA-GSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVH 210 (361)
T ss_pred -------hhhCCccccceeeeeccCCcceecc-cccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCcee
Confidence 0122355678999999999887776 6689999998643111111 011111111123335567899
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 306 (512)
.+.|+|+|..|+-.+.|..+.+-|....
T Consensus 211 ~v~fs~sG~~lawv~Hds~v~~~da~~p 238 (361)
T KOG1523|consen 211 GVLFSPSGNRLAWVGHDSTVSFVDAAGP 238 (361)
T ss_pred eeEeCCCCCEeeEecCCCceEEeecCCC
Confidence 9999999999999999999999997554
No 194
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.79 E-value=1.5e-15 Score=130.52 Aligned_cols=236 Identities=14% Similarity=0.185 Sum_probs=174.2
Q ss_pred EEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC--CcEEEE
Q 010390 58 FCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD--QTIKIW 135 (512)
Q Consensus 58 ~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--g~i~iw 135 (512)
+..|+.+...|..|+.|| -++|+.+.-.. ..........|..+-|+ ..++|..+.+ +.+++.
T Consensus 10 ~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k-------------~~~~~~~~~~IvEmLFS--SSLvaiV~~~qpr~Lkv~ 73 (391)
T KOG2110|consen 10 FIGFNQDSTLLSVGSKDG-YKIFSCSPFEK-------------CFSKDTEGVSIVEMLFS--SSLVAIVSIKQPRKLKVV 73 (391)
T ss_pred eeeeccceeEEEccCCCc-eeEEecCchHH-------------hhcccCCCeEEEEeecc--cceeEEEecCCCceEEEE
Confidence 333599999999999998 56777654311 11111222345555565 4566654444 459999
Q ss_pred eCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390 136 DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 136 d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
+...+..++.+. ....|.++.++. +.|+++-.+ .|.|||+++.+.+.....
T Consensus 74 ~~Kk~~~ICe~~-fpt~IL~VrmNr---~RLvV~Lee-~IyIydI~~MklLhTI~t------------------------ 124 (391)
T KOG2110|consen 74 HFKKKTTICEIF-FPTSILAVRMNR---KRLVVCLEE-SIYIYDIKDMKLLHTIET------------------------ 124 (391)
T ss_pred EcccCceEEEEe-cCCceEEEEEcc---ceEEEEEcc-cEEEEecccceeehhhhc------------------------
Confidence 999888888776 445899999975 456666554 599999998877654422
Q ss_pred cccccccEEEEEEeecCCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec
Q 010390 216 RKAASMSITSVLYLKDEVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM 294 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~ 294 (512)
...+...+.++..+..+.+++.-++ ..|.|.+||+.+.+... ....|.+.+-+++|+++|.+||+++.
T Consensus 125 ~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~nl~~v~-----------~I~aH~~~lAalafs~~G~llATASe 193 (391)
T KOG2110|consen 125 TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTINLQPVN-----------TINAHKGPLAALAFSPDGTLLATASE 193 (391)
T ss_pred cCCCccceEeeccCCCCceEEecCCCCCceEEEEEcccceeee-----------EEEecCCceeEEEECCCCCEEEEecc
Confidence 2234456777777777788887543 35899999999988766 46799999999999999999999999
Q ss_pred CCe-EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 295 DHR-IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 295 dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
.|+ |||+.+.+ ...+..+........+.+++|+|++++|++.++.++|+||.++.
T Consensus 194 KGTVIRVf~v~~--G~kl~eFRRG~~~~~IySL~Fs~ds~~L~~sS~TeTVHiFKL~~ 249 (391)
T KOG2110|consen 194 KGTVIRVFSVPE--GQKLYEFRRGTYPVSIYSLSFSPDSQFLAASSNTETVHIFKLEK 249 (391)
T ss_pred CceEEEEEEcCC--ccEeeeeeCCceeeEEEEEEECCCCCeEEEecCCCeEEEEEecc
Confidence 986 78999865 44566666555566788999999999999999999999999864
No 195
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.79 E-value=2.3e-17 Score=144.11 Aligned_cols=204 Identities=13% Similarity=0.180 Sum_probs=153.5
Q ss_pred EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCC
Q 010390 154 KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEV 233 (512)
Q Consensus 154 ~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~ 233 (512)
.+++|+.++ ..+++++.||++|+|+..+..... ....|...|.++.|+||++
T Consensus 148 k~vaf~~~g-s~latgg~dg~lRv~~~Ps~~t~l---------------------------~e~~~~~eV~DL~FS~dgk 199 (398)
T KOG0771|consen 148 KVVAFNGDG-SKLATGGTDGTLRVWEWPSMLTIL---------------------------EEIAHHAEVKDLDFSPDGK 199 (398)
T ss_pred eEEEEcCCC-CEeeeccccceEEEEecCcchhhh---------------------------hhHhhcCccccceeCCCCc
Confidence 678999988 899999999999999976544332 3457888999999999999
Q ss_pred EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC---C--EEEEEecCCeEEEEEcccCCC
Q 010390 234 SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG---V--FLTASCMDHRIYLYNVLQLDK 308 (512)
Q Consensus 234 ~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~---~--~l~~~~~dg~i~i~d~~~~~~ 308 (512)
.+++.|. | ..+||+.+++....... ..........+.|+.++ . .++....-+.|+.||+.....
T Consensus 200 ~lasig~-d-~~~VW~~~~g~~~a~~t---------~~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~ 268 (398)
T KOG0771|consen 200 FLASIGA-D-SARVWSVNTGAALARKT---------PFSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSG 268 (398)
T ss_pred EEEEecC-C-ceEEEEeccCchhhhcC---------CcccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecc
Confidence 9999884 6 89999999985443321 12222345667777666 2 233333456788888754433
Q ss_pred Cce-EeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCc
Q 010390 309 GPI-QHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYT 387 (512)
Q Consensus 309 ~~~-~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~ 387 (512)
... +..........+.+++.+++|++++.|+.||.|.|++..+-+......+.|...|+.+.|+||. +++++.+.|..
T Consensus 269 ~~~l~~~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq~~~~vk~aH~~~VT~ltF~Pds-r~~~svSs~~~ 347 (398)
T KOG0771|consen 269 SNFLRLRKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQRLQYVKEAHLGFVTGLTFSPDS-RYLASVSSDNE 347 (398)
T ss_pred ccccchhhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceeeeeEeehhhheeeeeeEEEcCCc-CcccccccCCc
Confidence 211 1111112223578899999999999999999999999998887767778999999999999999 89999999999
Q ss_pred EEEEeCCCCc
Q 010390 388 VRLWSLENSR 397 (512)
Q Consensus 388 i~vwd~~~~~ 397 (512)
+.|..+.-..
T Consensus 348 ~~v~~l~vd~ 357 (398)
T KOG0771|consen 348 AAVTKLAVDK 357 (398)
T ss_pred eeEEEEeecc
Confidence 9998887643
No 196
>KOG0649 consensus WD40 repeat protein [General function prediction only]
Probab=99.79 E-value=5.5e-17 Score=131.23 Aligned_cols=249 Identities=12% Similarity=0.131 Sum_probs=175.3
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----------eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKK----------KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~----------~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
..|.+-+|+|.+++|+.|..+|.|.+..+.+- ..+...++|.++|+.++|.. .+|++|+. |.|+-|
T Consensus 11 ~tvf~qa~sp~~~~l~agn~~G~iav~sl~sl~s~sa~~~gk~~iv~eqahdgpiy~~~f~d---~~Lls~gd-G~V~gw 86 (325)
T KOG0649|consen 11 NTVFAQAISPSKQYLFAGNLFGDIAVLSLKSLDSGSAEPPGKLKIVPEQAHDGPIYYLAFHD---DFLLSGGD-GLVYGW 86 (325)
T ss_pred HHHHHHhhCCcceEEEEecCCCeEEEEEehhhhccccCCCCCcceeeccccCCCeeeeeeeh---hheeeccC-ceEEEe
Confidence 45666789999999999999999999987541 23455689999999999983 56777764 999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
..+.......... +.........-...-..|+++...|..+.++.+| -|+.++.||+++++...
T Consensus 87 ~W~E~~es~~~K~--------------lwe~~~P~~~~~~evPeINam~ldP~enSi~~Ag-GD~~~y~~dlE~G~i~r- 150 (325)
T KOG0649|consen 87 EWNEEEESLATKR--------------LWEVKIPMQVDAVEVPEINAMWLDPSENSILFAG-GDGVIYQVDLEDGRIQR- 150 (325)
T ss_pred eehhhhhhccchh--------------hhhhcCccccCcccCCccceeEeccCCCcEEEec-CCeEEEEEEecCCEEEE-
Confidence 8875443110000 0000000001011224689999999888888878 49999999999998776
Q ss_pred ccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece------eceeEEEEEECCCC
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR------IESFYVKSEICPNA 332 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------~~~~~~~~~~s~~~ 332 (512)
.+.+|...|.++.--.....+++|+.||++++||.++.+.........++ ...++.++ .-+.
T Consensus 151 ----------~~rGHtDYvH~vv~R~~~~qilsG~EDGtvRvWd~kt~k~v~~ie~yk~~~~lRp~~g~wigal--a~~e 218 (325)
T KOG0649|consen 151 ----------EYRGHTDYVHSVVGRNANGQILSGAEDGTVRVWDTKTQKHVSMIEPYKNPNLLRPDWGKWIGAL--AVNE 218 (325)
T ss_pred ----------EEcCCcceeeeeeecccCcceeecCCCccEEEEeccccceeEEeccccChhhcCcccCceeEEE--eccC
Confidence 58899999999998666667899999999999999875433222211111 22334344 4566
Q ss_pred CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
.+|++|+. -.+.+|.++..+.. ....-...|..+.|.. ..+++++..+.|.-|.+..
T Consensus 219 dWlvCGgG-p~lslwhLrsse~t--~vfpipa~v~~v~F~~---d~vl~~G~g~~v~~~~l~G 275 (325)
T KOG0649|consen 219 DWLVCGGG-PKLSLWHLRSSEST--CVFPIPARVHLVDFVD---DCVLIGGEGNHVQSYTLNG 275 (325)
T ss_pred ceEEecCC-CceeEEeccCCCce--EEEecccceeEeeeec---ceEEEeccccceeeeeecc
Confidence 78888874 45999999987663 2333456788888865 4788888888999998754
No 197
>KOG1963 consensus WD40 repeat protein [General function prediction only]
Probab=99.78 E-value=5.2e-16 Score=147.81 Aligned_cols=305 Identities=14% Similarity=0.139 Sum_probs=212.8
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
..+|.+ ++.|.+.+..- +..+.+|+..+..... .....-..|...+++.++||+++++++|..||.|
T Consensus 163 ~~~I~~---~~~ge~~~i~~-~~~~~~~~v~~~~~~~---------~~~~~~~~Htf~~t~~~~spn~~~~Aa~d~dGrI 229 (792)
T KOG1963|consen 163 PKSIVD---NNSGEFKGIVH-MCKIHIYFVPKHTKHT---------SSRDITVHHTFNITCVALSPNERYLAAGDSDGRI 229 (792)
T ss_pred CccEEE---cCCceEEEEEE-eeeEEEEEecccceee---------ccchhhhhhcccceeEEeccccceEEEeccCCcE
Confidence 456777 78888777665 4478899887643110 0111223566779999999999999999999999
Q ss_pred EEEeCCC--C--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 133 KIWDAEK--K--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 133 ~iwd~~~--~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
.+|.--. + .....+.-|...|++++|+++| .+|++|+..|.+.+|.+.+++...
T Consensus 230 ~vw~d~~~~~~~~t~t~lHWH~~~V~~L~fS~~G-~~LlSGG~E~VLv~Wq~~T~~kqf--------------------- 287 (792)
T KOG1963|consen 230 LVWRDFGSSDDSETCTLLHWHHDEVNSLSFSSDG-AYLLSGGREGVLVLWQLETGKKQF--------------------- 287 (792)
T ss_pred EEEeccccccccccceEEEecccccceeEEecCC-ceEeecccceEEEEEeecCCCccc---------------------
Confidence 9996322 1 2345567788999999999999 899999999999999999877322
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF 288 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (512)
+..-.++|..+.++||+...+++. .|..|.+....+...........+...........-.+.++++|.-+.
T Consensus 288 -------LPRLgs~I~~i~vS~ds~~~sl~~-~DNqI~li~~~dl~~k~tIsgi~~~~~~~k~~~~~l~t~~~idpr~~~ 359 (792)
T KOG1963|consen 288 -------LPRLGSPILHIVVSPDSDLYSLVL-EDNQIHLIKASDLEIKSTISGIKPPTPSTKTRPQSLTTGVSIDPRTNS 359 (792)
T ss_pred -------ccccCCeeEEEEEcCCCCeEEEEe-cCceEEEEeccchhhhhhccCccCCCccccccccccceeEEEcCCCCc
Confidence 223356899999999999888766 699999998877665554433333211123334455778899997777
Q ss_pred EEEEecCCeEEEEEcccCCCCceEeee------ec-eeceeEEEEEECCCCCEEEEecC--------C--CCEEEEecCC
Q 010390 289 LTASCMDHRIYLYNVLQLDKGPIQHFS------GC-RIESFYVKSEICPNASHILSGSS--------D--GNAYVWQVNK 351 (512)
Q Consensus 289 l~~~~~dg~i~i~d~~~~~~~~~~~~~------~~-~~~~~~~~~~~s~~~~~l~~g~~--------d--g~i~iw~~~~ 351 (512)
++..+..|.|.+||+.+.......... +. .....+++++.+..|.+++++-. | -.+++|-...
T Consensus 360 ~vln~~~g~vQ~ydl~td~~i~~~~v~~~n~~~~~~n~~v~itav~~~~~gs~maT~E~~~d~~~~~~~e~~LKFW~~n~ 439 (792)
T KOG1963|consen 360 LVLNGHPGHVQFYDLYTDSTIYKLQVCDENYSDGDVNIQVGITAVARSRFGSWMATLEARIDKFNFFDGEVSLKFWQYNP 439 (792)
T ss_pred eeecCCCceEEEEeccccceeeeEEEEeecccCCcceeEEeeeeehhhccceEEEEeeeeehhhhccCceEEEEEEEEcC
Confidence 888889999999998664332111111 11 23345677888888999988632 2 3588898765
Q ss_pred CCCC----CceeccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCCcccc
Q 010390 352 PQAD----PIKLKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 352 ~~~~----~~~~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
.... ......|+..+...++.+.... ..++++.||.++||-+.+.+-+.
T Consensus 440 ~~kt~~L~T~I~~PH~~~~vat~~~~~~rs~~~vta~~dg~~KiW~~~~~~n~~ 493 (792)
T KOG1963|consen 440 NSKTFILNTKINNPHGNAFVATIFLNPTRSVRCVTASVDGDFKIWVFTDDSNIY 493 (792)
T ss_pred CcceeEEEEEEecCCCceeEEEEEecCcccceeEEeccCCeEEEEEEecccccC
Confidence 4432 1234678776666665543324 89999999999999996655433
No 198
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.77 E-value=4.8e-17 Score=155.87 Aligned_cols=234 Identities=16% Similarity=0.136 Sum_probs=159.6
Q ss_pred CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCee--eecccC
Q 010390 74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKC--TGALMG 148 (512)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~--~~~~~~ 148 (512)
+..|.|||.+... ...+..|...+.+.+|+|||+.|+.++.+ ..|++||+.+++. +..+.+
T Consensus 183 ~~~i~i~d~dg~~--------------~~~lt~~~~~v~~p~wSPDG~~la~~s~~~~~~~i~i~dl~tg~~~~l~~~~g 248 (429)
T PRK01742 183 PYEVRVADYDGFN--------------QFIVNRSSQPLMSPAWSPDGSKLAYVSFENKKSQLVVHDLRSGARKVVASFRG 248 (429)
T ss_pred eEEEEEECCCCCC--------------ceEeccCCCccccceEcCCCCEEEEEEecCCCcEEEEEeCCCCceEEEecCCC
Confidence 4689999986542 33456788899999999999999977654 4699999988753 333444
Q ss_pred cCCCEEEEEeeCCCCCeEEE-EeCCCcEEEE--eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 149 HTGSIKSLCSHPTNSDILVS-GSRDGSFAIW--DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 149 h~~~v~~l~~~~~~~~~l~s-~~~dg~i~vw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
| ...++|+|++ +.|+. .+.+|.+.+| |+.++.. ..+..+...+..
T Consensus 249 ~---~~~~~wSPDG-~~La~~~~~~g~~~Iy~~d~~~~~~----------------------------~~lt~~~~~~~~ 296 (429)
T PRK01742 249 H---NGAPAFSPDG-SRLAFASSKDGVLNIYVMGANGGTP----------------------------SQLTSGAGNNTE 296 (429)
T ss_pred c---cCceeECCCC-CEEEEEEecCCcEEEEEEECCCCCe----------------------------EeeccCCCCcCC
Confidence 3 3468999998 55555 4578876666 4443321 122234456788
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
..|+|+++.++.++..++...+|+++........ . .+.. ....|+|+|+.|+..+.++ +.+||+.+
T Consensus 297 ~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~~----------l-~~~~--~~~~~SpDG~~ia~~~~~~-i~~~Dl~~ 362 (429)
T PRK01742 297 PSWSPDGQSILFTSDRSGSPQVYRMSASGGGASL----------V-GGRG--YSAQISADGKTLVMINGDN-VVKQDLTS 362 (429)
T ss_pred EEECCCCCEEEEEECCCCCceEEEEECCCCCeEE----------e-cCCC--CCccCCCCCCEEEEEcCCC-EEEEECCC
Confidence 9999999998887767788888887543221111 1 1111 4578999999998887765 55689866
Q ss_pred CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC--CCCCCCceeccccCCeEEEEeCCC
Q 010390 306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN--KPQADPIKLKSHDGEVTAVNWCPN 374 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~--~~~~~~~~~~~h~~~v~~v~~~~~ 374 (512)
.....+ ..... ...+.|+|+|++|+.++.++.+.+|++. ++.. ...+..|.+.+...+|+|-
T Consensus 363 g~~~~l--t~~~~----~~~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~-~~~l~~~~g~~~~p~wsp~ 426 (429)
T PRK01742 363 GSTEVL--SSTFL----DESPSISPNGIMIIYSSTQGLGKVLQLVSADGRF-KARLPGSDGQVKFPAWSPY 426 (429)
T ss_pred CCeEEe--cCCCC----CCCceECCCCCEEEEEEcCCCceEEEEEECCCCc-eEEccCCCCCCCCcccCCC
Confidence 432211 11111 1246899999999999999988888763 2333 4567788888999999984
No 199
>KOG1517 consensus Guanine nucleotide binding protein MIP1 [Cell cycle control, cell division, chromosome partitioning]
Probab=99.77 E-value=1.2e-16 Score=154.44 Aligned_cols=262 Identities=16% Similarity=0.206 Sum_probs=183.4
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcC---CCEEEEEeeC-CCCCeEEEEeCCCcEEEEeCCCCC
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT---GSIKSLCSHP-TNSDILVSGSRDGSFAIWDLRCKS 184 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~---~~v~~l~~~~-~~~~~l~s~~~dg~i~vwd~~~~~ 184 (512)
..-..+.|+|-...++++.....|+|||.+.++....|..+. ..|+.+.+-. ++..++++|+.||.|+||+--...
T Consensus 1065 ~~pk~~~~hpf~p~i~~ad~r~~i~vwd~e~~~~l~~F~n~~~~~t~Vs~l~liNe~D~aLlLtas~dGvIRIwk~y~~~ 1144 (1387)
T KOG1517|consen 1065 QPPKTLKFHPFEPQIAAADDRERIRVWDWEKGRLLNGFDNGAFPDTRVSDLELINEQDDALLLTASSDGVIRIWKDYADK 1144 (1387)
T ss_pred CCCceeeecCCCceeEEcCCcceEEEEecccCceeccccCCCCCCCccceeeeecccchhheeeeccCceEEEecccccc
Confidence 356678899988899999888889999999999887775443 4688888754 334689999999999999854332
Q ss_pred C-CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 185 S-PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 185 ~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
. ... .+.... .......+..+.-.-+.|......++++| +-..|+|||..........
T Consensus 1145 ~~~~e-----LVTaw~-----------~Ls~~~~~~r~~~~v~dWqQ~~G~Ll~tG-d~r~IRIWDa~~E~~~~di---- 1203 (1387)
T KOG1517|consen 1145 WKKPE-----LVTAWS-----------SLSDQLPGARGTGLVVDWQQQSGHLLVTG-DVRSIRIWDAHKEQVVADI---- 1203 (1387)
T ss_pred cCCce-----eEEeec-----------cccccCccCCCCCeeeehhhhCCeEEecC-CeeEEEEEecccceeEeec----
Confidence 1 110 000000 00001111122225567888888888877 4789999999987765543
Q ss_pred ccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEEEEcccCCCC-ceEeeeeceeceeEEEEEECCCCC-EEEEecC
Q 010390 264 AESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSGCRIESFYVKSEICPNAS-HILSGSS 340 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~~~~~~~~~~~~~s~~~~-~l~~g~~ 340 (512)
..+....|+++.-+- .|+.+++|..||.|++||.+..... .+.....|.....|+.+.+.+.|- .|++|+.
T Consensus 1204 ------P~~s~t~vTaLS~~~~~gn~i~AGfaDGsvRvyD~R~a~~ds~v~~~R~h~~~~~Iv~~slq~~G~~elvSgs~ 1277 (1387)
T KOG1517|consen 1204 ------PYGSSTLVTALSADLVHGNIIAAGFADGSVRVYDRRMAPPDSLVCVYREHNDVEPIVHLSLQRQGLGELVSGSQ 1277 (1387)
T ss_pred ------ccCCCccceeecccccCCceEEEeecCCceEEeecccCCccccceeecccCCcccceeEEeecCCCcceeeecc
Confidence 222334577776653 4699999999999999998765443 344555555444588888888764 4999999
Q ss_pred CCCEEEEecCCC-CCCCceecccc--C-CeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 341 DGNAYVWQVNKP-QADPIKLKSHD--G-EVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 341 dg~i~iw~~~~~-~~~~~~~~~h~--~-~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
||.|++||++.. .........|. + .++++..+++. .++|+|+. +.|+||++...+.-
T Consensus 1278 ~G~I~~~DlR~~~~e~~~~iv~~~~yGs~lTal~VH~ha-piiAsGs~-q~ikIy~~~G~~l~ 1338 (1387)
T KOG1517|consen 1278 DGDIQLLDLRMSSKETFLTIVAHWEYGSALTALTVHEHA-PIIASGSA-QLIKIYSLSGEQLN 1338 (1387)
T ss_pred CCeEEEEecccCcccccceeeeccccCccceeeeeccCC-CeeeecCc-ceEEEEecChhhhc
Confidence 999999999984 32222333443 3 59999999998 79999998 99999999765543
No 200
>PRK11028 6-phosphogluconolactonase; Provisional
Probab=99.77 E-value=1.8e-15 Score=140.84 Aligned_cols=261 Identities=10% Similarity=0.060 Sum_probs=161.8
Q ss_pred CCcceEEEEEecCCCcEEEEe-eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-
Q 010390 51 TPPLAVSFCKTSKNSHIFAVS-DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG- 128 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg-~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~- 128 (512)
+.+..+.+ +|++++|+++ ..++.|.+|+++.... . ...... ...+....++|+|++++|++++.
T Consensus 35 ~~~~~l~~---spd~~~lyv~~~~~~~i~~~~~~~~g~-l---------~~~~~~-~~~~~p~~i~~~~~g~~l~v~~~~ 100 (330)
T PRK11028 35 GQVQPMVI---SPDKRHLYVGVRPEFRVLSYRIADDGA-L---------TFAAES-PLPGSPTHISTDHQGRFLFSASYN 100 (330)
T ss_pred CCCccEEE---CCCCCEEEEEECCCCcEEEEEECCCCc-e---------EEeeee-cCCCCceEEEECCCCCEEEEEEcC
Confidence 44556666 9999988776 4588899999863211 0 111111 12235678999999999987764
Q ss_pred CCcEEEEeCCC-Ce---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 129 DQTIKIWDAEK-KK---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 129 dg~i~iwd~~~-~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
++.|.+|++++ +. .+..+. +.....+++++|++..++++...++.|.+||+.+..........
T Consensus 101 ~~~v~v~~~~~~g~~~~~~~~~~-~~~~~~~~~~~p~g~~l~v~~~~~~~v~v~d~~~~g~l~~~~~~------------ 167 (330)
T PRK11028 101 ANCVSVSPLDKDGIPVAPIQIIE-GLEGCHSANIDPDNRTLWVPCLKEDRIRLFTLSDDGHLVAQEPA------------ 167 (330)
T ss_pred CCeEEEEEECCCCCCCCceeecc-CCCcccEeEeCCCCCEEEEeeCCCCEEEEEEECCCCcccccCCC------------
Confidence 88999999864 32 222232 23456778899998444466666799999999763322100000
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCc--cceecccCCCccccccccccccCeeEEEe
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNL--KAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~--~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
.... ........+.|+|++++++++...++.|.+||++.. ........... + ...........+.+
T Consensus 168 --------~~~~-~~g~~p~~~~~~pdg~~lyv~~~~~~~v~v~~~~~~~~~~~~~~~~~~~-p--~~~~~~~~~~~i~~ 235 (330)
T PRK11028 168 --------EVTT-VEGAGPRHMVFHPNQQYAYCVNELNSSVDVWQLKDPHGEIECVQTLDMM-P--ADFSDTRWAADIHI 235 (330)
T ss_pred --------ceec-CCCCCCceEEECCCCCEEEEEecCCCEEEEEEEeCCCCCEEEEEEEecC-C--CcCCCCccceeEEE
Confidence 0000 112345678999999999887766899999999742 21111100000 0 00001122346889
Q ss_pred CCCCCEEEEEec-CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCC
Q 010390 283 DSNGVFLTASCM-DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNK 351 (512)
Q Consensus 283 ~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~ 351 (512)
+|++++|+++.. ++.|.+|++...... ...............++++|+|++|+++.. +++|.+|+++.
T Consensus 236 ~pdg~~lyv~~~~~~~I~v~~i~~~~~~-~~~~~~~~~~~~p~~~~~~~dg~~l~va~~~~~~v~v~~~~~ 305 (330)
T PRK11028 236 TPDGRHLYACDRTASLISVFSVSEDGSV-LSFEGHQPTETQPRGFNIDHSGKYLIAAGQKSHHISVYEIDG 305 (330)
T ss_pred CCCCCEEEEecCCCCeEEEEEEeCCCCe-EEEeEEEeccccCCceEECCCCCEEEEEEccCCcEEEEEEcC
Confidence 999999999864 689999998543221 111111111123346899999999987665 88999998863
No 201
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.77 E-value=5.6e-17 Score=145.55 Aligned_cols=209 Identities=15% Similarity=0.165 Sum_probs=161.1
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
.+.++.++.||.+.|.+ ..++....+..|.+.|.+-.|+|+| .-|++++.||.|++|.-...-
T Consensus 75 ~d~~~i~s~DGkf~il~-k~~rVE~sv~AH~~A~~~gRW~~dG-tgLlt~GEDG~iKiWSrsGML--------------- 137 (737)
T KOG1524|consen 75 SDTLLICSNDGRFVILN-KSARVERSISAHAAAISSGRWSPDG-AGLLTAGEDGVIKIWSRSGML--------------- 137 (737)
T ss_pred cceEEEEcCCceEEEec-ccchhhhhhhhhhhhhhhcccCCCC-ceeeeecCCceEEEEeccchH---------------
Confidence 45688889999999988 5677788889999999999999999 889999999999999854221
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
...+.....+|.|++|.|+.+.++.+. .+.+.|=-+.....+. ....|.+-|.+
T Consensus 138 -------------RStl~Q~~~~v~c~~W~p~S~~vl~c~--g~h~~IKpL~~n~k~i-----------~WkAHDGiiL~ 191 (737)
T KOG1524|consen 138 -------------RSTVVQNEESIRCARWAPNSNSIVFCQ--GGHISIKPLAANSKII-----------RWRAHDGLVLS 191 (737)
T ss_pred -------------HHHHhhcCceeEEEEECCCCCceEEec--CCeEEEeeccccccee-----------EEeccCcEEEE
Confidence 112223456899999999999888764 6777776655444433 57889999999
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
+.|++...++++|+.|-..++||-.. ..+ +.....+..+++++|.|+ ..++.++. ++++ ..
T Consensus 192 ~~W~~~s~lI~sgGED~kfKvWD~~G---~~L--f~S~~~ey~ITSva~npd-~~~~v~S~-nt~R------------~~ 252 (737)
T KOG1524|consen 192 LSWSTQSNIIASGGEDFRFKIWDAQG---ANL--FTSAAEEYAITSVAFNPE-KDYLLWSY-NTAR------------FS 252 (737)
T ss_pred eecCccccceeecCCceeEEeecccC---ccc--ccCChhccceeeeeeccc-cceeeeee-eeee------------ec
Confidence 99999999999999999999999632 222 333344567899999999 66666653 2333 22
Q ss_pred ccccCCeEEEEeCCCCCCeEEEEeCCCcEEEE
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLW 391 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vw 391 (512)
....+.|..++|++|| ..++.|...|.+.+=
T Consensus 253 ~p~~GSifnlsWS~DG-TQ~a~gt~~G~v~~A 283 (737)
T KOG1524|consen 253 SPRVGSIFNLSWSADG-TQATCGTSTGQLIVA 283 (737)
T ss_pred CCCccceEEEEEcCCC-ceeeccccCceEEEe
Confidence 3346789999999999 889888888877653
No 202
>KOG1523 consensus Actin-related protein Arp2/3 complex, subunit ARPC1/p41-ARC [Cytoskeleton]
Probab=99.76 E-value=2.2e-16 Score=132.98 Aligned_cols=246 Identities=14% Similarity=0.188 Sum_probs=184.1
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
--.++|+|.+|++|+..+|.+-....|.||..... +..+++..|...|++|+|.|.. +.|++|+.|..-++|....
T Consensus 8 ~~~~pitchAwn~drt~iAv~~~~~evhiy~~~~~~~w~~~htls~Hd~~vtgvdWap~s-nrIvtcs~drnayVw~~~~ 86 (361)
T KOG1523|consen 8 RLLEPITCHAWNSDRTQIAVSPNNHEVHIYSMLGADLWEPAHTLSEHDKIVTGVDWAPKS-NRIVTCSHDRNAYVWTQPS 86 (361)
T ss_pred eccCceeeeeecCCCceEEeccCCceEEEEEecCCCCceeceehhhhCcceeEEeecCCC-CceeEccCCCCccccccCC
Confidence 34579999999999999999999999999987655 4678899999999999999988 8999999999999999843
Q ss_pred CCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390 183 KSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 183 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~ 262 (512)
+.. .+....+..++...+++.|+|.++.+++ |+....|.+|-.+....-.....
T Consensus 87 ~~~------------------------WkptlvLlRiNrAAt~V~WsP~enkFAV-gSgar~isVcy~E~ENdWWVsKh- 140 (361)
T KOG1523|consen 87 GGT------------------------WKPTLVLLRINRAATCVKWSPKENKFAV-GSGARLISVCYYEQENDWWVSKH- 140 (361)
T ss_pred CCe------------------------eccceeEEEeccceeeEeecCcCceEEe-ccCccEEEEEEEecccceehhhh-
Confidence 321 1222345567789999999999999988 55688899988776543321110
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc--cCCCC----------ceEee--eeceeceeEEEEEE
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL--QLDKG----------PIQHF--SGCRIESFYVKSEI 328 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~--~~~~~----------~~~~~--~~~~~~~~~~~~~~ 328 (512)
....+...|.++.|+|++-+|++|+.|+..++|..- ..+.+ +...+ +.....+.+..+.|
T Consensus 141 ------ikkPirStv~sldWhpnnVLlaaGs~D~k~rVfSayIK~Vdekpap~pWgsk~PFG~lm~E~~~~ggwvh~v~f 214 (361)
T KOG1523|consen 141 ------IKKPIRSTVTSLDWHPNNVLLAAGSTDGKCRVFSAYIKGVDEKPAPTPWGSKMPFGQLMSEASSSGGWVHGVLF 214 (361)
T ss_pred ------hCCccccceeeeeccCCcceecccccCcceeEEEEeeeccccCCCCCCCccCCcHHHHHHhhccCCCceeeeEe
Confidence 233445679999999999999999999999999741 11111 11110 11134467888999
Q ss_pred CCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390 329 CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 329 s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 386 (512)
+|+|..|+-.+.|..+.+=|...+...........-+..++.|-.+. .++.++.|.
T Consensus 215 s~sG~~lawv~Hds~v~~~da~~p~~~v~~~~~~~lP~ls~~~ise~--~vv~ag~~c 270 (361)
T KOG1523|consen 215 SPSGNRLAWVGHDSTVSFVDAAGPSERVQSVATAQLPLLSVSWISEN--SVVAAGYDC 270 (361)
T ss_pred CCCCCEeeEecCCCceEEeecCCCchhccchhhccCCceeeEeecCC--ceeecCCCC
Confidence 99999999999999999999887764334443334778888887654 566666663
No 203
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.76 E-value=4.4e-15 Score=125.20 Aligned_cols=241 Identities=14% Similarity=0.222 Sum_probs=168.0
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCc--EEEEEEecCCCEEE-EEeC
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA--IFDLCWIKEDTNIL-TASG 128 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~--V~~l~~s~~~~~l~-s~~~ 128 (512)
...+++| +.|..-+++|..+| .+||+.+--.. ...-+.+.+. +..+-| ..++|+ .||.
T Consensus 7 ~~lsvs~---NQD~ScFava~~~G-friyn~~P~ke-------------~~~r~~~~~G~~~veMLf--R~N~laLVGGg 67 (346)
T KOG2111|consen 7 KTLSVSF---NQDHSCFAVATDTG-FRIYNCDPFKE-------------SASRQFIDGGFKIVEMLF--RSNYLALVGGG 67 (346)
T ss_pred ceeEEEE---ccCCceEEEEecCc-eEEEecCchhh-------------hhhhccccCchhhhhHhh--hhceEEEecCC
Confidence 3445777 89999999998776 89999864211 1111112222 222222 344555 4444
Q ss_pred C------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC-CCCCCccccceeeecccc
Q 010390 129 D------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK-SSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 129 d------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~-~~~~~~~~~~~~~~~~~~ 201 (512)
+ ..|.|||=...+++.++. ...+|.++.+.++ .|++.- ++.|.||...+. +.....
T Consensus 68 ~~pky~pNkviIWDD~k~~~i~el~-f~~~I~~V~l~r~---riVvvl-~~~I~VytF~~n~k~l~~~------------ 130 (346)
T KOG2111|consen 68 SRPKYPPNKVIIWDDLKERCIIELS-FNSEIKAVKLRRD---RIVVVL-ENKIYVYTFPDNPKLLHVI------------ 130 (346)
T ss_pred CCCCCCCceEEEEecccCcEEEEEE-eccceeeEEEcCC---eEEEEe-cCeEEEEEcCCChhheeee------------
Confidence 3 579999966667777776 5679999999873 455554 468999998732 222211
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
........+.+++-+.+...|+.-|-.-|.|.|-|+...+... ......|...|.|++
T Consensus 131 -------------et~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~---------p~~I~AH~s~Iacv~ 188 (346)
T KOG2111|consen 131 -------------ETRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNA---------PSIINAHDSDIACVA 188 (346)
T ss_pred -------------ecccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCC---------ceEEEcccCceeEEE
Confidence 1111122355555555666677777778999999998765421 115789999999999
Q ss_pred eCCCCCEEEEEecCCe-EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 282 QDSNGVFLTASCMDHR-IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~-i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
++.+|.++|+++..|+ |||||..+ ...+..+........+.+++|||+..+||++++.|+++||.++..
T Consensus 189 Ln~~Gt~vATaStkGTLIRIFdt~~--g~~l~E~RRG~d~A~iy~iaFSp~~s~LavsSdKgTlHiF~l~~~ 258 (346)
T KOG2111|consen 189 LNLQGTLVATASTKGTLIRIFDTED--GTLLQELRRGVDRADIYCIAFSPNSSWLAVSSDKGTLHIFSLRDT 258 (346)
T ss_pred EcCCccEEEEeccCcEEEEEEEcCC--CcEeeeeecCCchheEEEEEeCCCccEEEEEcCCCeEEEEEeecC
Confidence 9999999999999997 79999766 456677776666677999999999999999999999999998763
No 204
>KOG1524 consensus WD40 repeat-containing protein CHE-2 [General function prediction only]
Probab=99.75 E-value=6.9e-17 Score=145.01 Aligned_cols=207 Identities=17% Similarity=0.239 Sum_probs=157.5
Q ss_pred cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec
Q 010390 66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA 145 (512)
Q Consensus 66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~ 145 (512)
+.|+.++.||.+.|-+-... .-....+|.+.|.+-.|+|||.-|++++.||.|+||. ++|-...+
T Consensus 76 d~~~i~s~DGkf~il~k~~r--------------VE~sv~AH~~A~~~gRW~~dGtgLlt~GEDG~iKiWS-rsGMLRSt 140 (737)
T KOG1524|consen 76 DTLLICSNDGRFVILNKSAR--------------VERSISAHAAAISSGRWSPDGAGLLTAGEDGVIKIWS-RSGMLRST 140 (737)
T ss_pred ceEEEEcCCceEEEecccch--------------hhhhhhhhhhhhhhcccCCCCceeeeecCCceEEEEe-ccchHHHH
Confidence 57888899999999875432 2445678999999999999999999999999999998 56666666
Q ss_pred ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
+.....+|.|++|.|+.++.+++.+. .+.+=.+... ....+.++|++-|.+
T Consensus 141 l~Q~~~~v~c~~W~p~S~~vl~c~g~--h~~IKpL~~n---------------------------~k~i~WkAHDGiiL~ 191 (737)
T KOG1524|consen 141 VVQNEESIRCARWAPNSNSIVFCQGG--HISIKPLAAN---------------------------SKIIRWRAHDGLVLS 191 (737)
T ss_pred HhhcCceeEEEEECCCCCceEEecCC--eEEEeecccc---------------------------cceeEEeccCcEEEE
Confidence 66677899999999998777776653 4555444321 223367899999999
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
+.|++....+++ |++|-..++||....... ....|..+|++++|.|+ ..++.++.+ ++++
T Consensus 192 ~~W~~~s~lI~s-gGED~kfKvWD~~G~~Lf------------~S~~~ey~ITSva~npd-~~~~v~S~n-t~R~----- 251 (737)
T KOG1524|consen 192 LSWSTQSNIIAS-GGEDFRFKIWDAQGANLF------------TSAAEEYAITSVAFNPE-KDYLLWSYN-TARF----- 251 (737)
T ss_pred eecCccccceee-cCCceeEEeecccCcccc------------cCChhccceeeeeeccc-cceeeeeee-eeee-----
Confidence 999999988887 558999999997654322 35667788999999999 555555432 3331
Q ss_pred CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
.. +..+.+..++||+||..+++|+..|.+.+
T Consensus 252 ---------~~-p~~GSifnlsWS~DGTQ~a~gt~~G~v~~ 282 (737)
T KOG1524|consen 252 ---------SS-PRVGSIFNLSWSADGTQATCGTSTGQLIV 282 (737)
T ss_pred ---------cC-CCccceEEEEEcCCCceeeccccCceEEE
Confidence 11 11234778999999999999999887654
No 205
>KOG1334 consensus WD40 repeat protein [General function prediction only]
Probab=99.75 E-value=3.1e-17 Score=145.60 Aligned_cols=294 Identities=14% Similarity=0.170 Sum_probs=215.0
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEE
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHPTN-SDILVSGSRDGSFAI 177 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~v 177 (512)
....|..|.+.|+.+.|+..|..|++|+.|..|.+||+..++....+ .+|...|....|.|.. ...+++++.||.+++
T Consensus 134 l~~kL~~H~GcVntV~FN~~Gd~l~SgSDD~~vv~WdW~~~~~~l~f~SGH~~NvfQaKFiP~s~d~ti~~~s~dgqvr~ 213 (559)
T KOG1334|consen 134 LQKKLNKHKGCVNTVHFNQRGDVLASGSDDLQVVVWDWVSGSPKLSFESGHCNNVFQAKFIPFSGDRTIVTSSRDGQVRV 213 (559)
T ss_pred hhhcccCCCCccceeeecccCceeeccCccceEEeehhhccCcccccccccccchhhhhccCCCCCcCceeccccCceee
Confidence 45667899999999999999999999999999999999998876665 5788889888898853 367999999999998
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
=.+...... .....+..|.+.|..++.-|+...-+.+++.|+.+.-+|++......
T Consensus 214 s~i~~t~~~------------------------e~t~rl~~h~g~vhklav~p~sp~~f~S~geD~~v~~~Dlr~~~pa~ 269 (559)
T KOG1334|consen 214 SEILETGYV------------------------ENTKRLAPHEGPVHKLAVEPDSPKPFLSCGEDAVVFHIDLRQDVPAE 269 (559)
T ss_pred eeeccccce------------------------ecceecccccCccceeeecCCCCCcccccccccceeeeeeccCCccc
Confidence 776533221 12335668899999999999888777667789999999999776544
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeEEEEEcccCCCCc----eEeeeec----eeceeEEEEEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRIYLYNVLQLDKGP----IQHFSGC----RIESFYVKSEI 328 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i~i~d~~~~~~~~----~~~~~~~----~~~~~~~~~~~ 328 (512)
....... .....-....++.+|... .+++++.|..+++||.+...... +..+..+ .....|++++|
T Consensus 270 ~~~cr~~-----~~~~~v~L~~Ia~~P~nt~~faVgG~dqf~RvYD~R~~~~e~~n~~~~~f~p~hl~~d~~v~ITgl~Y 344 (559)
T KOG1334|consen 270 KFVCREA-----DEKERVGLYTIAVDPRNTNEFAVGGSDQFARVYDQRRIDKEENNGVLDKFCPHHLVEDDPVNITGLVY 344 (559)
T ss_pred eeeeecc-----CCccceeeeeEecCCCCccccccCChhhhhhhhcccchhhccccchhhhcCCccccccCcccceeEEe
Confidence 4321110 111123577888888654 89999999999999987654331 1111111 22346889999
Q ss_pred CCCCCEEEEecCCCCEEEEecCCCC------------CCCceeccccC--CeEEEEe-CCCCCCeEEEEeCCCcEEEEeC
Q 010390 329 CPNASHILSGSSDGNAYVWQVNKPQ------------ADPIKLKSHDG--EVTAVNW-CPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 329 s~~~~~l~~g~~dg~i~iw~~~~~~------------~~~~~~~~h~~--~v~~v~~-~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
+.++.-|++.-.|-.|+++.-..+. .....+++|.. .|..+-| -|.. .++++|++-|.|.||+-
T Consensus 345 sh~~sElLaSYnDe~IYLF~~~~~~G~~p~~~s~~~~~~k~vYKGHrN~~TVKgVNFfGPrs-EyVvSGSDCGhIFiW~K 423 (559)
T KOG1334|consen 345 SHDGSELLASYNDEDIYLFNKSMGDGSEPDPSSPREQYVKRVYKGHRNSRTVKGVNFFGPRS-EYVVSGSDCGHIFIWDK 423 (559)
T ss_pred cCCccceeeeecccceEEeccccccCCCCCCCcchhhccchhhcccccccccceeeeccCcc-ceEEecCccceEEEEec
Confidence 9887777777778889999543221 12234778854 5777775 4666 89999999999999999
Q ss_pred CCCcccccccCccccceeeeeccchhcccccC
Q 010390 394 ENSRCSSMRSPSSVRRRVMAIPSTECRKLFMN 425 (512)
Q Consensus 394 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 425 (512)
.+++.++....... .|.|+-..|...+++.
T Consensus 424 ~t~eii~~MegDr~--VVNCLEpHP~~PvLAs 453 (559)
T KOG1334|consen 424 KTGEIIRFMEGDRH--VVNCLEPHPHLPVLAS 453 (559)
T ss_pred chhHHHHHhhcccc--eEeccCCCCCCchhhc
Confidence 99999887655443 6667766666666654
No 206
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.74 E-value=2e-17 Score=145.89 Aligned_cols=270 Identities=14% Similarity=0.233 Sum_probs=197.7
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
.+.+.| +.+|.+|+.|+..|.|-.+|..++.. ...+ .-.+.|.++.|..+.+++|++ ...-+
T Consensus 132 PY~~~y---trnGrhlllgGrKGHlAa~Dw~t~~L-------------~~Ei-~v~Etv~Dv~~LHneq~~AVA-QK~y~ 193 (545)
T KOG1272|consen 132 PYHLDY---TRNGRHLLLGGRKGHLAAFDWVTKKL-------------HFEI-NVMETVRDVTFLHNEQFFAVA-QKKYV 193 (545)
T ss_pred Ceeeee---cCCccEEEecCCccceeeeeccccee-------------eeee-ehhhhhhhhhhhcchHHHHhh-hhceE
Confidence 567777 99999999999999999999987643 2222 234689999999888888887 45679
Q ss_pred EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccc
Q 010390 133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKR 212 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 212 (512)
+||| ..|..++.++.|. .|..+.|.|.. .+|++++..|.++.-|+..++....
T Consensus 194 yvYD-~~GtElHClk~~~-~v~rLeFLPyH-fLL~~~~~~G~L~Y~DVS~GklVa~------------------------ 246 (545)
T KOG1272|consen 194 YVYD-NNGTELHCLKRHI-RVARLEFLPYH-FLLVAASEAGFLKYQDVSTGKLVAS------------------------ 246 (545)
T ss_pred EEec-CCCcEEeehhhcC-chhhhcccchh-heeeecccCCceEEEeechhhhhHH------------------------
Confidence 9999 6777888888664 79999999987 8999999999999999998876543
Q ss_pred ceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE
Q 010390 213 VSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS 292 (512)
Q Consensus 213 ~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~ 292 (512)
+....+.+..++-+|-+..+-+ |..+|+|.+|.......+. .+..|.++|.+++++++|.+++++
T Consensus 247 ---~~t~~G~~~vm~qNP~NaVih~-GhsnGtVSlWSP~skePLv-----------KiLcH~g~V~siAv~~~G~YMaTt 311 (545)
T KOG1272|consen 247 ---IRTGAGRTDVMKQNPYNAVIHL-GHSNGTVSLWSPNSKEPLV-----------KILCHRGPVSSIAVDRGGRYMATT 311 (545)
T ss_pred ---HHccCCccchhhcCCccceEEE-cCCCceEEecCCCCcchHH-----------HHHhcCCCcceEEECCCCcEEeec
Confidence 3334556777777787766555 7689999999998877665 467888999999999999999999
Q ss_pred ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC-CCC-CCCceeccc--cCCeEE
Q 010390 293 CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN-KPQ-ADPIKLKSH--DGEVTA 368 (512)
Q Consensus 293 ~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~-~~~-~~~~~~~~h--~~~v~~ 368 (512)
+.|..++|||++.... +..+.. ......+++|..| +||. +....|.||.=. .+. .....+..| .+.|..
T Consensus 312 G~Dr~~kIWDlR~~~q--l~t~~t---p~~a~~ls~Sqkg-lLA~-~~G~~v~iw~d~~~~s~~~~~pYm~H~~~~~V~~ 384 (545)
T KOG1272|consen 312 GLDRKVKIWDLRNFYQ--LHTYRT---PHPASNLSLSQKG-LLAL-SYGDHVQIWKDALKGSGHGETPYMNHRCGGPVED 384 (545)
T ss_pred ccccceeEeeeccccc--cceeec---CCCcccccccccc-ceee-ecCCeeeeehhhhcCCCCCCcchhhhccCccccc
Confidence 9999999999987542 222222 1223346776655 3333 344569999432 211 111222233 468999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEE
Q 010390 369 VNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~dg~i~v 390 (512)
+.|+|-. ..|-.|-..|.-.+
T Consensus 385 l~FcP~E-DvLGIGH~~G~tsi 405 (545)
T KOG1272|consen 385 LRFCPYE-DVLGIGHAGGITSI 405 (545)
T ss_pred ceeccHH-HeeeccccCCceeE
Confidence 9999976 56665555554333
No 207
>KOG1310 consensus WD40 repeat protein [General function prediction only]
Probab=99.74 E-value=6.4e-17 Score=145.61 Aligned_cols=238 Identities=16% Similarity=0.241 Sum_probs=166.0
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeCCC-CCeEEEEeCCCcEEEE
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHPTN-SDILVSGSRDGSFAIW 178 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~~~-~~~l~s~~~dg~i~vw 178 (512)
...+.||++.|+++.|+.+|.+|++|+.|-.+.|||.-..+.+..+ .+|...|.++.|-|.. ..++++|..|..|+++
T Consensus 43 E~eL~GH~GCVN~LeWn~dG~lL~SGSDD~r~ivWd~~~~KllhsI~TgHtaNIFsvKFvP~tnnriv~sgAgDk~i~lf 122 (758)
T KOG1310|consen 43 EAELTGHTGCVNCLEWNADGELLASGSDDTRLIVWDPFEYKLLHSISTGHTANIFSVKFVPYTNNRIVLSGAGDKLIKLF 122 (758)
T ss_pred hhhhccccceecceeecCCCCEEeecCCcceEEeecchhcceeeeeecccccceeEEeeeccCCCeEEEeccCcceEEEE
Confidence 4567899999999999999999999999999999999888887776 5899999999999964 3588999999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
|+...+.-..- -........+..|...|..++-.|++...+-++++||+++-+|++....-..
T Consensus 123 dl~~~~~~~~d-----------------~~~~~~~~~~~cht~rVKria~~p~~PhtfwsasEDGtirQyDiREph~c~p 185 (758)
T KOG1310|consen 123 DLDSSKEGGMD-----------------HGMEETTRCWSCHTDRVKRIATAPNGPHTFWSASEDGTIRQYDIREPHVCNP 185 (758)
T ss_pred ecccccccccc-----------------cCccchhhhhhhhhhhhhheecCCCCCceEEEecCCcceeeecccCCccCCc
Confidence 99853321111 0012223345678888999999999977776777999999999997432211
Q ss_pred ccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCCC----------------ceEeee-ece--
Q 010390 259 QAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDKG----------------PIQHFS-GCR-- 318 (512)
Q Consensus 259 ~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~~----------------~~~~~~-~~~-- 318 (512)
....+. .........-...++.++|. ..+|++|+.|-..++||.+..... .+..+. ++.
T Consensus 186 ~~~~~~-~l~ny~~~lielk~ltisp~rp~~laVGgsdpfarLYD~Rr~lks~~s~~~~~~~pp~~~~cv~yf~p~hlkn 264 (758)
T KOG1310|consen 186 DEDCPS-ILVNYNPQLIELKCLTISPSRPYYLAVGGSDPFARLYDRRRVLKSFRSDGTMNTCPPKDCRCVRYFSPGHLKN 264 (758)
T ss_pred cccccH-HHHHhchhhheeeeeeecCCCCceEEecCCCchhhhhhhhhhccCCCCCccccCCCCcccchhheecCccccC
Confidence 100000 00011222245678899985 468999999999999995321100 111111 111
Q ss_pred ----ecee---EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 319 ----IESF---YVKSEICPNASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 319 ----~~~~---~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
.... ++-++|+|+|.-|++.-..-.|+++|+...+.+.
T Consensus 265 ~~gn~~~~~~~~t~vtfnpNGtElLvs~~gEhVYlfdvn~~~~~~ 309 (758)
T KOG1310|consen 265 SQGNLDRYITCCTYVTFNPNGTELLVSWGGEHVYLFDVNEDKSPT 309 (758)
T ss_pred cccccccceeeeEEEEECCCCcEEEEeeCCeEEEEEeecCCCCce
Confidence 1111 3457899999877665555569999998876543
No 208
>KOG0771 consensus Prolactin regulatory element-binding protein/Protein transport protein SEC12p [Intracellular trafficking, secretion, and vesicular transport]
Probab=99.73 E-value=1.6e-16 Score=139.01 Aligned_cols=204 Identities=19% Similarity=0.243 Sum_probs=150.7
Q ss_pred EEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 112 FDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 112 ~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
..++|+.+|..|++|+.||++|||++.+...+.....|...|.++.|+|++ .+|++.+.| ..+||+++++........
T Consensus 148 k~vaf~~~gs~latgg~dg~lRv~~~Ps~~t~l~e~~~~~eV~DL~FS~dg-k~lasig~d-~~~VW~~~~g~~~a~~t~ 225 (398)
T KOG0771|consen 148 KVVAFNGDGSKLATGGTDGTLRVWEWPSMLTILEEIAHHAEVKDLDFSPDG-KFLASIGAD-SARVWSVNTGAALARKTP 225 (398)
T ss_pred eEEEEcCCCCEeeeccccceEEEEecCcchhhhhhHhhcCccccceeCCCC-cEEEEecCC-ceEEEEeccCchhhhcCC
Confidence 789999999999999999999999988888888888899999999999998 899999999 999999998854432211
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecC---C-EEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE---V-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESS 267 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~---~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 267 (512)
...+.....+.|..++ . ++++.-...+.|..||+.....-... ..
T Consensus 226 -------------------------~~k~~~~~~cRF~~d~~~~~l~laa~~~~~~~v~~~~~~~w~~~~~l-~~----- 274 (398)
T KOG0771|consen 226 -------------------------FSKDEMFSSCRFSVDNAQETLRLAASQFPGGGVRLCDISLWSGSNFL-RL----- 274 (398)
T ss_pred -------------------------cccchhhhhceecccCCCceEEEEEecCCCCceeEEEeeeecccccc-ch-----
Confidence 1122345556666554 2 23333334456777666543321000 00
Q ss_pred ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
.........|++++.+.+|++++.|+.||.|-+++..+.+ ...+..+.+...|+.+.|+|+.+++++.+.|..+.|.
T Consensus 275 ~~~~~~~~siSsl~VS~dGkf~AlGT~dGsVai~~~~~lq---~~~~vk~aH~~~VT~ltF~Pdsr~~~svSs~~~~~v~ 351 (398)
T KOG0771|consen 275 RKKIKRFKSISSLAVSDDGKFLALGTMDGSVAIYDAKSLQ---RLQYVKEAHLGFVTGLTFSPDSRYLASVSSDNEAAVT 351 (398)
T ss_pred hhhhhccCcceeEEEcCCCcEEEEeccCCcEEEEEeceee---eeEeehhhheeeeeeEEEcCCcCcccccccCCceeEE
Confidence 0233334579999999999999999999999999986532 2333334445689999999999999999999999988
Q ss_pred ecCC
Q 010390 348 QVNK 351 (512)
Q Consensus 348 ~~~~ 351 (512)
.+..
T Consensus 352 ~l~v 355 (398)
T KOG0771|consen 352 KLAV 355 (398)
T ss_pred EEee
Confidence 7765
No 209
>KOG1240 consensus Protein kinase containing WD40 repeats [Signal transduction mechanisms]
Probab=99.73 E-value=1.2e-15 Score=149.97 Aligned_cols=271 Identities=16% Similarity=0.240 Sum_probs=178.7
Q ss_pred ccccceeccccCCCcEEEEEEecCC-CEEEEEeCCCcEEEEeCCCC-------eeeecccCcCCCEEEEEeeCCCCCeEE
Q 010390 96 AEKARISDWVAHQNAIFDLCWIKED-TNILTASGDQTIKIWDAEKK-------KCTGALMGHTGSIKSLCSHPTNSDILV 167 (512)
Q Consensus 96 ~~~~~~~~~~~h~~~V~~l~~s~~~-~~l~s~~~dg~i~iwd~~~~-------~~~~~~~~h~~~v~~l~~~~~~~~~l~ 167 (512)
..+..+..+..|...|..++.++.. .+++||+.||+|++||...- +...++......+.++...+.+ +.+|
T Consensus 1036 p~G~lVAhL~Ehs~~v~k~a~s~~~~s~FvsgS~DGtVKvW~~~k~~~~~~s~rS~ltys~~~sr~~~vt~~~~~-~~~A 1114 (1431)
T KOG1240|consen 1036 PRGILVAHLHEHSSAVIKLAVSSEHTSLFVSGSDDGTVKVWNLRKLEGEGGSARSELTYSPEGSRVEKVTMCGNG-DQFA 1114 (1431)
T ss_pred ccceEeehhhhccccccceeecCCCCceEEEecCCceEEEeeehhhhcCcceeeeeEEEeccCCceEEEEeccCC-CeEE
Confidence 3456788889999999999998855 99999999999999997542 2233344356788999998877 8899
Q ss_pred EEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec-CCEEEEEeecCCeEE
Q 010390 168 SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVK 246 (512)
Q Consensus 168 s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~ 246 (512)
.++.||.|++.+++........... .+.........-+..-+|... +..+++.+...+.|.
T Consensus 1115 v~t~DG~v~~~~id~~~~~~~~~~~------------------~ri~n~~~~g~vv~m~a~~~~~~S~~lvy~T~~~~iv 1176 (1431)
T KOG1240|consen 1115 VSTKDGSVRVLRIDHYNVSKRVATQ------------------VRIPNLKKDGVVVSMHAFTAIVQSHVLVYATDLSRIV 1176 (1431)
T ss_pred EEcCCCeEEEEEccccccccceeee------------------eecccccCCCceEEeecccccccceeEEEEEeccceE
Confidence 9999999999999863222111110 001111111222333344332 232444566889999
Q ss_pred EEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEE
Q 010390 247 FWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKS 326 (512)
Q Consensus 247 iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 326 (512)
.||++........ ......+.|++++.+|.+.+++.|...|.+.+||++-.. ++... .++....+..+
T Consensus 1177 ~~D~r~~~~~w~l---------k~~~~hG~vTSi~idp~~~WlviGts~G~l~lWDLRF~~--~i~sw-~~P~~~~i~~v 1244 (1431)
T KOG1240|consen 1177 SWDTRMRHDAWRL---------KNQLRHGLVTSIVIDPWCNWLVIGTSRGQLVLWDLRFRV--PILSW-EHPARAPIRHV 1244 (1431)
T ss_pred EecchhhhhHHhh---------hcCccccceeEEEecCCceEEEEecCCceEEEEEeecCc--eeecc-cCcccCCcceE
Confidence 9999987766554 344445779999999999999999999999999997532 22222 22333455566
Q ss_pred EECCC---CCEEEEec--CCCCEEEEecCCCCCCCceeccc-------------------cCCeEEEEeCCCCCCeEEEE
Q 010390 327 EICPN---ASHILSGS--SDGNAYVWQVNKPQADPIKLKSH-------------------DGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 327 ~~s~~---~~~l~~g~--~dg~i~iw~~~~~~~~~~~~~~h-------------------~~~v~~v~~~~~~~~~l~s~ 382 (512)
..+|- ....++++ ..+.|.+|++.++... ..+... .-......+...+ ..+.+|
T Consensus 1245 ~~~~~~~~~S~~vs~~~~~~nevs~wn~~~g~~~-~vl~~s~~~p~ls~~~Ps~~~~kp~~~~~~~~~~~~~~-~~~ltg 1322 (1431)
T KOG1240|consen 1245 WLCPTYPQESVSVSAGSSSNNEVSTWNMETGLRQ-TVLWASDGAPILSYALPSNDARKPDSLAGISCGVCEKN-GFLLTG 1322 (1431)
T ss_pred EeeccCCCCceEEEecccCCCceeeeecccCcce-EEEEcCCCCcchhhhcccccCCCCCcccceeeecccCC-ceeeec
Confidence 66554 34554444 4678999999887542 222111 1112222333333 689999
Q ss_pred eCCCcEEEEeCCCCccc
Q 010390 383 SDDYTVRLWSLENSRCS 399 (512)
Q Consensus 383 ~~dg~i~vwd~~~~~~~ 399 (512)
+.|..|+.||....+..
T Consensus 1323 gsd~kIR~wD~~~p~~s 1339 (1431)
T KOG1240|consen 1323 GSDMKIRKWDPTRPEIS 1339 (1431)
T ss_pred CCccceeeccCCCcccc
Confidence 99999999999876543
No 210
>KOG0642 consensus Cell-cycle nuclear protein, contains WD-40 repeats [Cell cycle control, cell division, chromosome partitioning]
Probab=99.73 E-value=5.3e-17 Score=146.78 Aligned_cols=228 Identities=15% Similarity=0.177 Sum_probs=159.0
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
.-.....+++|.+||.||.+ ++++..+.+|+-||+|+.|++....-.... .........+.||.+.|+.+++|+
T Consensus 333 ~~epi~tfraH~gPVl~v~v---~~n~~~~ysgg~Dg~I~~w~~p~n~dp~ds---~dp~vl~~~l~Ghtdavw~l~~s~ 406 (577)
T KOG0642|consen 333 DVEPILTFRAHEGPVLCVVV---PSNGEHCYSGGIDGTIRCWNLPPNQDPDDS---YDPSVLSGTLLGHTDAVWLLALSS 406 (577)
T ss_pred ceeeeEEEecccCceEEEEe---cCCceEEEeeccCceeeeeccCCCCCcccc---cCcchhccceeccccceeeeeecc
Confidence 33556788999999999999 999999999999999999976522211111 112234567889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCc--CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceee
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGH--TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
....|++++.||+++.|+...... .++... .+.-.++.+-.......++ +..++.+++...+...... ++
T Consensus 407 ~~~~Llscs~DgTvr~w~~~~~~~-~~f~~~~e~g~Plsvd~~ss~~a~~~~---s~~~~~~~~~~~ev~s~~~----~~ 478 (577)
T KOG0642|consen 407 TKDRLLSCSSDGTVRLWEPTEESP-CTFGEPKEHGYPLSVDRTSSRPAHSLA---SFRFGYTSIDDMEVVSDLL----IF 478 (577)
T ss_pred cccceeeecCCceEEeeccCCcCc-cccCCccccCCcceEeeccchhHhhhh---hcccccccchhhhhhhhee----ec
Confidence 999999999999999999876655 333222 2334555554433122222 2334444443322221110 00
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
.... .........+..+.++|.....+. +..|+.|+++|..++..+. ....|...
T Consensus 479 ~s~~-------------~~~~~~~~~in~vVs~~~~~~~~~-~hed~~Ir~~dn~~~~~l~-----------s~~a~~~s 533 (577)
T KOG0642|consen 479 ESSA-------------SPGPRRYPQINKVVSHPTADITFT-AHEDRSIRFFDNKTGKILH-----------SMVAHKDS 533 (577)
T ss_pred cccC-------------CCcccccCccceEEecCCCCeeEe-cccCCceecccccccccch-----------heeeccce
Confidence 0000 011111245778889999977777 4489999999999988776 57788889
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
++++++.|+|-+|++++.|+.+++|.+..
T Consensus 534 vtslai~~ng~~l~s~s~d~sv~l~kld~ 562 (577)
T KOG0642|consen 534 VTSLAIDPNGPYLMSGSHDGSVRLWKLDV 562 (577)
T ss_pred ecceeecCCCceEEeecCCceeehhhccc
Confidence 99999999999999999999999999743
No 211
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.72 E-value=9.8e-16 Score=137.81 Aligned_cols=260 Identities=13% Similarity=0.127 Sum_probs=170.6
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee----eecccCcCCCEEEEEe-----eCCCCCeEEEEeCCCcEEEEeC
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC----TGALMGHTGSIKSLCS-----HPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~----~~~~~~h~~~v~~l~~-----~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
.+....++-.|++|+..-. ..+++|+...+.. +....-......|=+| .+++ --++.|-.-|.|++.|.
T Consensus 125 ~~~~~~~~~~gd~lcFnvg-~~lyv~~~~g~~~~~~pi~k~~y~gt~P~cHdfn~~~a~~~g-~dllIGf~tGqvq~idp 202 (636)
T KOG2394|consen 125 IVTNTNQSGKGDRLCFNVG-RELYVYSYRGAADLSKPIDKREYKGTSPTCHDFNSFTATPKG-LDLLIGFTTGQVQLIDP 202 (636)
T ss_pred ceeeccccCCCCEEEEecC-CeEEEEEccCcchhccchhhhcccCCCCceecccccccCCCC-cceEEeeccCceEEecc
Confidence 4555555667788876543 3589998874322 1111111111222233 3344 55777777789999887
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee---
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI--- 257 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~--- 257 (512)
...+....... ........++|+.|-|.+..++.+...+|.+++||........
T Consensus 203 ~~~~~sklfne-----------------------~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~ 259 (636)
T KOG2394|consen 203 INFEVSKLFNE-----------------------ERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPS 259 (636)
T ss_pred hhhHHHHhhhh-----------------------cccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCc
Confidence 65222111111 1111236899999999888877778889999999874211110
Q ss_pred cccCCC--------------ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc-eEeeeeceecee
Q 010390 258 TQAWPH--------------AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP-IQHFSGCRIESF 322 (512)
Q Consensus 258 ~~~~~~--------------~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~~~~~~~~~~~~ 322 (512)
....+. ..+..........|...+|+|||++||+.+.||.++|||..+.+... .+.+. .-
T Consensus 260 ~~~~k~~~~f~i~t~ksk~~rNPv~~w~~~~g~in~f~FS~DG~~LA~VSqDGfLRvF~fdt~eLlg~mkSYF-----GG 334 (636)
T KOG2394|consen 260 YQALKDGDQFAILTSKSKKTRNPVARWHIGEGSINEFAFSPDGKYLATVSQDGFLRIFDFDTQELLGVMKSYF-----GG 334 (636)
T ss_pred ccccCCCCeeEEeeeeccccCCccceeEeccccccceeEcCCCceEEEEecCceEEEeeccHHHHHHHHHhhc-----cc
Confidence 000000 01222333345579999999999999999999999999986533211 11121 33
Q ss_pred EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC----------------------------
Q 010390 323 YVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN---------------------------- 374 (512)
Q Consensus 323 ~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~---------------------------- 374 (512)
..|++|||||+||++|++|--|.||.+...+. +..-.+|+.+|..|+|.|.
T Consensus 335 LLCvcWSPDGKyIvtGGEDDLVtVwSf~erRV-VARGqGHkSWVs~VaFDpytt~~ee~~~~~~~~~~~~~~~~~~~~r~ 413 (636)
T KOG2394|consen 335 LLCVCWSPDGKYIVTGGEDDLVTVWSFEERRV-VARGQGHKSWVSVVAFDPYTTSTEEWNNFSGMDSTFSDVAHDFEIRA 413 (636)
T ss_pred eEEEEEcCCccEEEecCCcceEEEEEeccceE-EEeccccccceeeEeecccccccccccccccccccccchhccccccc
Confidence 67899999999999999999999999988765 5677899999999999831
Q ss_pred -------------------CCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 375 -------------------EAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 375 -------------------~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
-.+.|.+.+.|-.+.+||+....+..
T Consensus 414 ~~~~S~~~~~~s~~~~~~~v~YRfGSVGqDTqlcLWDlteD~L~~ 458 (636)
T KOG2394|consen 414 NGTGSAEGCPLSSFNRINSVTYRFGSVGQDTQLCLWDLTEDVLVP 458 (636)
T ss_pred CCCCCcCCCcccccccccceEEEeecccccceEEEEecchhhccc
Confidence 01468889999999999998776555
No 212
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.72 E-value=1.3e-15 Score=129.51 Aligned_cols=270 Identities=17% Similarity=0.262 Sum_probs=174.0
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC------------CCcEEEEEEe
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH------------QNAIFDLCWI 117 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h------------~~~V~~l~~s 117 (512)
.+-|.+|.| ...|.+||||+.+|.|.+|.-..... .+......++.| .+.|..+.|.
T Consensus 25 adiis~vef---~~~Ge~LatGdkgGRVv~f~r~~~~~--------~ey~~~t~fqshepEFDYLkSleieEKinkIrw~ 93 (433)
T KOG1354|consen 25 ADIISAVEF---DHYGERLATGDKGGRVVLFEREKLYK--------GEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWL 93 (433)
T ss_pred hcceeeEEe---ecccceEeecCCCCeEEEeecccccc--------cceeeeeeeeccCcccchhhhhhhhhhhhhceec
Confidence 455778888 89999999999999999997543321 011122333333 3578999999
Q ss_pred cCC--CEEEEEeCCCcEEEEeCCCCee-----------------------------------eecc-cCcCCCEEEEEee
Q 010390 118 KED--TNILTASGDQTIKIWDAEKKKC-----------------------------------TGAL-MGHTGSIKSLCSH 159 (512)
Q Consensus 118 ~~~--~~l~s~~~dg~i~iwd~~~~~~-----------------------------------~~~~-~~h~~~v~~l~~~ 159 (512)
+++ ..++..+.|.+|++|.+..... .+.+ ..|.-.|++|+++
T Consensus 94 ~~~n~a~FLlstNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~N 173 (433)
T KOG1354|consen 94 DDGNLAEFLLSTNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVN 173 (433)
T ss_pred CCCCccEEEEecCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeec
Confidence 854 4566777899999998754211 0111 3477889999999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe
Q 010390 160 PTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS 239 (512)
Q Consensus 160 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g 239 (512)
.+. ..++++ .|=.|.+|+++-........ .-.......-..-|++..|+|....+++-+
T Consensus 174 sD~-Et~lSA-DdLRINLWnlei~d~sFnIV-------------------DIKP~nmEeLteVITsaEFhp~~cn~f~YS 232 (433)
T KOG1354|consen 174 SDK-ETFLSA-DDLRINLWNLEIIDQSFNIV-------------------DIKPANMEELTEVITSAEFHPHHCNVFVYS 232 (433)
T ss_pred Ccc-ceEeec-cceeeeeccccccCCceeEE-------------------EccccCHHHHHHHHhhhccCHhHccEEEEe
Confidence 887 666665 46789999987332111000 000001111223588899999877666656
Q ss_pred ecCCeEEEEeccCcccee-----cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEee
Q 010390 240 AVNSIVKFWDTRNLKAQI-----TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHF 314 (512)
Q Consensus 240 ~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~ 314 (512)
+..|+|++.|++...... ......+....-+......|..+.|+++|+++++-. --+|++||+.. +.+++..+
T Consensus 233 SSKGtIrLcDmR~~aLCd~hsKlfEepedp~~rsffseiIsSISDvKFs~sGryilsRD-yltvk~wD~nm-e~~pv~t~ 310 (433)
T KOG1354|consen 233 SSKGTIRLCDMRQSALCDAHSKLFEEPEDPSSRSFFSEIISSISDVKFSHSGRYILSRD-YLTVKLWDLNM-EAKPVETY 310 (433)
T ss_pred cCCCcEEEeechhhhhhcchhhhhccccCCcchhhHHHHhhhhhceEEccCCcEEEEec-cceeEEEeccc-cCCcceEE
Confidence 679999999999432211 111111111123344456789999999999998763 35899999844 34555555
Q ss_pred eeceec----------e---eEEEEEECCCCCEEEEecCCCCEEEEecCCCC
Q 010390 315 SGCRIE----------S---FYVKSEICPNASHILSGSSDGNAYVWQVNKPQ 353 (512)
Q Consensus 315 ~~~~~~----------~---~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~ 353 (512)
.-|... . .-..++|+.++.++++|+..+.+++|++..+.
T Consensus 311 ~vh~~lr~kLc~lYEnD~IfdKFec~~sg~~~~v~TGsy~n~frvf~~~~gs 362 (433)
T KOG1354|consen 311 PVHEYLRSKLCSLYENDAIFDKFECSWSGNDSYVMTGSYNNVFRVFNLARGS 362 (433)
T ss_pred eehHhHHHHHHHHhhccchhheeEEEEcCCcceEecccccceEEEecCCCCc
Confidence 443210 0 11247899999999999999999999966543
No 213
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.72 E-value=3.4e-15 Score=127.96 Aligned_cols=246 Identities=19% Similarity=0.247 Sum_probs=167.6
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
+..+..++|++.-..++++..|-.|++||-.. ++...++ .....|+|++|-|.+...|+.|+. +-|++|........
T Consensus 98 ~~dlr~~aWhqH~~~fava~nddvVriy~kss-t~pt~Lks~sQrnvtclawRPlsaselavgCr-~gIciW~~s~tln~ 175 (445)
T KOG2139|consen 98 EIDLRGVAWHQHIIAFAVATNDDVVRIYDKSS-TCPTKLKSVSQRNVTCLAWRPLSASELAVGCR-AGICIWSDSRTLNA 175 (445)
T ss_pred hcceeeEeechhhhhhhhhccCcEEEEeccCC-CCCceecchhhcceeEEEeccCCcceeeeeec-ceeEEEEcCccccc
Confidence 45788999999766788999999999999766 4444444 234689999999998888998887 46999987643322
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
...... .......+....+| .+|+++.|.+||..+++++..|..|.|||..++.....
T Consensus 176 ~r~~~~-------------~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg~~~pL-------- 233 (445)
T KOG2139|consen 176 NRNIRM-------------MSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTGQKIPL-------- 233 (445)
T ss_pred cccccc-------------ccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCCCcccc--------
Confidence 211000 00011112222333 78999999999999999988899999999999876542
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
.....+++.-+.|+||+.+|+++.-|+..++|+....-....-.+ + ...+...+|+|+|++|+.... |.-++
T Consensus 234 ---~~~glgg~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-g---sgrvqtacWspcGsfLLf~~s-gsp~l 305 (445)
T KOG2139|consen 234 ---IPKGLGGFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-G---SGRVQTACWSPCGSFLLFACS-GSPRL 305 (445)
T ss_pred ---cccCCCceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-c---CCceeeeeecCCCCEEEEEEc-CCceE
Confidence 223446788999999999999999999999996543211111111 1 125677899999998865543 34556
Q ss_pred EecCCCCCCCc--------------------eecc---ccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390 347 WQVNKPQADPI--------------------KLKS---HDGEVTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 347 w~~~~~~~~~~--------------------~~~~---h~~~v~~v~~~~~~~~~l~s~~~dg 386 (512)
|.+.-...... ...+ -.+.+.+++|.|.| .+|++.-..+
T Consensus 306 ysl~f~~~~~~~~~~~~~k~~lliaDL~e~ti~ag~~l~cgeaq~lawDpsG-eyLav~fKg~ 367 (445)
T KOG2139|consen 306 YSLTFDGEDSVFLRPQSIKRVLLIADLQEVTICAGQRLCCGEAQCLAWDPSG-EYLAVIFKGQ 367 (445)
T ss_pred EEEeecCCCccccCcccceeeeeeccchhhhhhcCcccccCccceeeECCCC-CEEEEEEcCC
Confidence 65532211100 0011 13678999999999 7888765443
No 214
>KOG2110 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.70 E-value=1.2e-14 Score=125.11 Aligned_cols=240 Identities=15% Similarity=0.199 Sum_probs=171.2
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSS 185 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~ 185 (512)
...+..+.|+.+...|..|+.|| .++++.+..............|-.+-|+. .++|..+.+. .+++.++.....
T Consensus 5 ~~ti~~~~~Nqd~~~lsvGs~~G-yk~~~~~~~~k~~~~~~~~~~IvEmLFSS---SLvaiV~~~qpr~Lkv~~~Kk~~~ 80 (391)
T KOG2110|consen 5 KPTINFIGFNQDSTLLSVGSKDG-YKIFSCSPFEKCFSKDTEGVSIVEMLFSS---SLVAIVSIKQPRKLKVVHFKKKTT 80 (391)
T ss_pred CcceeeeeeccceeEEEccCCCc-eeEEecCchHHhhcccCCCeEEEEeeccc---ceeEEEecCCCceEEEEEcccCce
Confidence 34567777999998999999999 78898776544222222333455666764 5666666554 488888775443
Q ss_pred CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
+... ....+|.++.++.+ .++++ -...|+|||+++.+.+.+...
T Consensus 81 ICe~----------------------------~fpt~IL~VrmNr~--RLvV~--Lee~IyIydI~~MklLhTI~t---- 124 (391)
T KOG2110|consen 81 ICEI----------------------------FFPTSILAVRMNRK--RLVVC--LEESIYIYDIKDMKLLHTIET---- 124 (391)
T ss_pred EEEE----------------------------ecCCceEEEEEccc--eEEEE--EcccEEEEecccceeehhhhc----
Confidence 2211 12346777777644 45543 255699999999998876532
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEe--cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASC--MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~--~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
...+..++.++.+++.+.+|+.-+ ..|.|.+||..+ ..++..+..|. +.+-+++|+++|.+||++++.|+
T Consensus 125 ----~~~n~~gl~AlS~n~~n~ylAyp~s~t~GdV~l~d~~n--l~~v~~I~aH~--~~lAalafs~~G~llATASeKGT 196 (391)
T KOG2110|consen 125 ----TPPNPKGLCALSPNNANCYLAYPGSTTSGDVVLFDTIN--LQPVNTINAHK--GPLAALAFSPDGTLLATASEKGT 196 (391)
T ss_pred ----cCCCccceEeeccCCCCceEEecCCCCCceEEEEEccc--ceeeeEEEecC--CceeEEEECCCCCEEEEeccCce
Confidence 223445677778887777888543 469999999865 44555666554 56788999999999999999997
Q ss_pred -EEEEecCCCCCCCceeccc--cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 344 -AYVWQVNKPQADPIKLKSH--DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 344 -i~iw~~~~~~~~~~~~~~h--~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
||||.+.+++.. ..++.- -..|.+++|+|++ .+|++.|..++|+|+.++...
T Consensus 197 VIRVf~v~~G~kl-~eFRRG~~~~~IySL~Fs~ds-~~L~~sS~TeTVHiFKL~~~~ 251 (391)
T KOG2110|consen 197 VIRVFSVPEGQKL-YEFRRGTYPVSIYSLSFSPDS-QFLAASSNTETVHIFKLEKVS 251 (391)
T ss_pred EEEEEEcCCccEe-eeeeCCceeeEEEEEEECCCC-CeEEEecCCCeEEEEEecccc
Confidence 899999988774 444322 2468999999999 899999999999999998766
No 215
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.69 E-value=9e-15 Score=139.84 Aligned_cols=236 Identities=13% Similarity=0.123 Sum_probs=153.6
Q ss_pred CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeeeecccCcCC
Q 010390 75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---DQTIKIWDAEKKKCTGALMGHTG 151 (512)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~ 151 (512)
..|.+||.+... .+.+..+...+.+.+|+|||+.|+..+. +..|.+|++.+++..... ...+
T Consensus 179 ~~l~~~d~dg~~--------------~~~lt~~~~~~~~p~wSPDG~~la~~s~~~g~~~i~i~dl~~G~~~~l~-~~~~ 243 (429)
T PRK03629 179 YELRVSDYDGYN--------------QFVVHRSPQPLMSPAWSPDGSKLAYVTFESGRSALVIQTLANGAVRQVA-SFPR 243 (429)
T ss_pred eeEEEEcCCCCC--------------CEEeecCCCceeeeEEcCCCCEEEEEEecCCCcEEEEEECCCCCeEEcc-CCCC
Confidence 368888887543 2334456678999999999999986542 457999999888543322 2233
Q ss_pred CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390 152 SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL 229 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 229 (512)
.+..+.|+|++..++++.+.+| .|.+||+.++.... +..+...+....|+
T Consensus 244 ~~~~~~~SPDG~~La~~~~~~g~~~I~~~d~~tg~~~~----------------------------lt~~~~~~~~~~wS 295 (429)
T PRK03629 244 HNGAPAFSPDGSKLAFALSKTGSLNLYVMDLASGQIRQ----------------------------VTDGRSNNTEPTWF 295 (429)
T ss_pred CcCCeEECCCCCEEEEEEcCCCCcEEEEEECCCCCEEE----------------------------ccCCCCCcCceEEC
Confidence 3456899999944444555555 48888987654211 11223356788999
Q ss_pred ecCCEEEEEeecCCeEEEE--eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcc
Q 010390 230 KDEVSIATASAVNSIVKFW--DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVL 304 (512)
Q Consensus 230 ~~~~~l~~~g~~dg~i~iw--d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~ 304 (512)
|+++.++.++..++...+| |+.++.... ............|+|||++|+..+.+ ..|.+||+.
T Consensus 296 PDG~~I~f~s~~~g~~~Iy~~d~~~g~~~~------------lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~ 363 (429)
T PRK03629 296 PDSQNLAYTSDQAGRPQVYKVNINGGAPQR------------ITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLA 363 (429)
T ss_pred CCCCEEEEEeCCCCCceEEEEECCCCCeEE------------eecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECC
Confidence 9999998866545544444 665543221 11122335678899999998876643 358889986
Q ss_pred cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC---EEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390 305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN---AYVWQVNKPQADPIKLKSHDGEVTAVNWCP 373 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~---i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~ 373 (512)
+... ..+.... ......|+|||++|+.++.++. +.+++++.... ..+.+|.+.+...+|+|
T Consensus 364 ~g~~---~~Lt~~~---~~~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~G~~~--~~l~~~~~~~~~p~Wsp 427 (429)
T PRK03629 364 TGGV---QVLTDTF---LDETPSIAPNGTMVIYSSSQGMGSVLNLVSTDGRFK--ARLPATDGQVKFPAWSP 427 (429)
T ss_pred CCCe---EEeCCCC---CCCCceECCCCCEEEEEEcCCCceEEEEEECCCCCe--EECccCCCCcCCcccCC
Confidence 5432 2222211 1224689999999998887764 67777754332 45667888899999987
No 216
>KOG1354 consensus Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.69 E-value=6.7e-15 Score=125.32 Aligned_cols=287 Identities=14% Similarity=0.165 Sum_probs=187.5
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----eeecccCcC------------CCEEEEEeeCCC-CCeEEEE
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----CTGALMGHT------------GSIKSLCSHPTN-SDILVSG 169 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~-~~~l~s~ 169 (512)
.+-|.++.|...|.+|++|..+|.|.++.-+... ....++.|. ..|+.+.|.+++ ...++..
T Consensus 25 adiis~vef~~~Ge~LatGdkgGRVv~f~r~~~~~~ey~~~t~fqshepEFDYLkSleieEKinkIrw~~~~n~a~FLls 104 (433)
T KOG1354|consen 25 ADIISAVEFDHYGERLATGDKGGRVVLFEREKLYKGEYNFQTEFQSHEPEFDYLKSLEIEEKINKIRWLDDGNLAEFLLS 104 (433)
T ss_pred hcceeeEEeecccceEeecCCCCeEEEeecccccccceeeeeeeeccCcccchhhhhhhhhhhhhceecCCCCccEEEEe
Confidence 3578899999999999999999999999643321 223333333 468889998765 3467777
Q ss_pred eCCCcEEEEeCCCCCCCCCccc------cceeeecccc---cccccccccccceecccccccEEEEEEeecCCEEEEEee
Q 010390 170 SRDGSFAIWDLRCKSSPKSNCA------ESFVFSSAVV---KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA 240 (512)
Q Consensus 170 ~~dg~i~vwd~~~~~~~~~~~~------~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~ 240 (512)
+.|.+|++|.+........... ...+.+.... +.........+..-..+|...|.++.++.|...++++
T Consensus 105 tNdktiKlWKi~er~~k~~~~~~~~~~~~~~~~~lr~p~~~~~~~~vea~prRv~aNaHtyhiNSIS~NsD~Et~lSA-- 182 (433)
T KOG1354|consen 105 TNDKTIKLWKIRERGSKKEGYNLPEEGPPGTITSLRLPVEGRHDLEVEASPRRVYANAHTYHINSISVNSDKETFLSA-- 182 (433)
T ss_pred cCCcceeeeeeeccccccccccccccCCCCccceeeceeeccccceeeeeeeeeccccceeEeeeeeecCccceEeec--
Confidence 8899999999876654431100 0000000000 0000000111112335788899999999999999875
Q ss_pred cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCC----CceEeee
Q 010390 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDK----GPIQHFS 315 (512)
Q Consensus 241 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~----~~~~~~~ 315 (512)
+|-.|.+|++.-...........+. .+.....-|++..|+|. .+.++-++..|+|++-|++.... ..+....
T Consensus 183 DdLRINLWnlei~d~sFnIVDIKP~---nmEeLteVITsaEFhp~~cn~f~YSSSKGtIrLcDmR~~aLCd~hsKlfEep 259 (433)
T KOG1354|consen 183 DDLRINLWNLEIIDQSFNIVDIKPA---NMEELTEVITSAEFHPHHCNVFVYSSSKGTIRLCDMRQSALCDAHSKLFEEP 259 (433)
T ss_pred cceeeeeccccccCCceeEEEcccc---CHHHHHHHHhhhccCHhHccEEEEecCCCcEEEeechhhhhhcchhhhhccc
Confidence 6899999998754433322211111 23444456889999985 56778888999999999974211 0011111
Q ss_pred e--------ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc------------CCe---EEEEeC
Q 010390 316 G--------CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD------------GEV---TAVNWC 372 (512)
Q Consensus 316 ~--------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~------------~~v---~~v~~~ 372 (512)
. ..+-..+..+.|+++|+++++-+. -+|++||++....++.++.-|. +.| .-++|+
T Consensus 260 edp~~rsffseiIsSISDvKFs~sGryilsRDy-ltvk~wD~nme~~pv~t~~vh~~lr~kLc~lYEnD~IfdKFec~~s 338 (433)
T KOG1354|consen 260 EDPSSRSFFSEIISSISDVKFSHSGRYILSRDY-LTVKLWDLNMEAKPVETYPVHEYLRSKLCSLYENDAIFDKFECSWS 338 (433)
T ss_pred cCCcchhhHHHHhhhhhceEEccCCcEEEEecc-ceeEEEeccccCCcceEEeehHhHHHHHHHHhhccchhheeEEEEc
Confidence 0 112234667999999999998754 5799999977666666666553 122 457899
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 373 PNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 373 ~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
-++ .+++||+....++++++..|.....
T Consensus 339 g~~-~~v~TGsy~n~frvf~~~~gsk~d~ 366 (433)
T KOG1354|consen 339 GND-SYVMTGSYNNVFRVFNLARGSKEDF 366 (433)
T ss_pred CCc-ceEecccccceEEEecCCCCcceee
Confidence 888 8999999999999999877765443
No 217
>PRK01742 tolB translocation protein TolB; Provisional
Probab=99.68 E-value=2.5e-15 Score=144.14 Aligned_cols=223 Identities=15% Similarity=0.143 Sum_probs=148.6
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCC---CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDED---GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
.+.+|...+.+++| ||||+.||.++.+ ..|++||+.++.. ..+..+.+|. ..++|+|||+
T Consensus 198 ~lt~~~~~v~~p~w---SPDG~~la~~s~~~~~~~i~i~dl~tg~~-----------~~l~~~~g~~---~~~~wSPDG~ 260 (429)
T PRK01742 198 IVNRSSQPLMSPAW---SPDGSKLAYVSFENKKSQLVVHDLRSGAR-----------KVVASFRGHN---GAPAFSPDGS 260 (429)
T ss_pred EeccCCCccccceE---cCCCCEEEEEEecCCCcEEEEEeCCCCce-----------EEEecCCCcc---CceeECCCCC
Confidence 34567778888888 9999999987643 3699999976532 2233344443 4689999999
Q ss_pred EEEEEe-CCCcEEEE--eCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 122 NILTAS-GDQTIKIW--DAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 122 ~l~s~~-~dg~i~iw--d~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
.|+.++ .+|.+.|| |+.+++. ..+..+...+....|+|++..+++++..+|...+|++........
T Consensus 261 ~La~~~~~~g~~~Iy~~d~~~~~~-~~lt~~~~~~~~~~wSpDG~~i~f~s~~~g~~~I~~~~~~~~~~~---------- 329 (429)
T PRK01742 261 RLAFASSKDGVLNIYVMGANGGTP-SQLTSGAGNNTEPSWSPDGQSILFTSDRSGSPQVYRMSASGGGAS---------- 329 (429)
T ss_pred EEEEEEecCCcEEEEEEECCCCCe-EeeccCCCCcCCEEECCCCCEEEEEECCCCCceEEEEECCCCCeE----------
Confidence 998764 67766555 6666554 445556777889999999844455555678899998754321110
Q ss_pred ccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
.. .+.. .+..|+|+++.+++++. ++ +.+||+.++...... .. ....
T Consensus 330 ----------------~l-~~~~--~~~~~SpDG~~ia~~~~-~~-i~~~Dl~~g~~~~lt-----------~~--~~~~ 375 (429)
T PRK01742 330 ----------------LV-GGRG--YSAQISADGKTLVMING-DN-VVKQDLTSGSTEVLS-----------ST--FLDE 375 (429)
T ss_pred ----------------Ee-cCCC--CCccCCCCCCEEEEEcC-CC-EEEEECCCCCeEEec-----------CC--CCCC
Confidence 01 1111 35679999999988663 44 666999877543211 00 1234
Q ss_pred EEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC
Q 010390 279 SLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN 331 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~ 331 (512)
.+.|+|+|++|+.++.++.+.+|++..........+..+. ..+...+|+|-
T Consensus 376 ~~~~sPdG~~i~~~s~~g~~~~l~~~~~~G~~~~~l~~~~--g~~~~p~wsp~ 426 (429)
T PRK01742 376 SPSISPNGIMIIYSSTQGLGKVLQLVSADGRFKARLPGSD--GQVKFPAWSPY 426 (429)
T ss_pred CceECCCCCEEEEEEcCCCceEEEEEECCCCceEEccCCC--CCCCCcccCCC
Confidence 6789999999999999999988887655555555555433 23445677764
No 218
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.67 E-value=1.4e-14 Score=125.63 Aligned_cols=262 Identities=15% Similarity=0.178 Sum_probs=193.2
Q ss_pred CCCcEEEEEEecCCC--EEEEEeCCCcEEEEeCCCCeeeecc------cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 107 HQNAIFDLCWIKEDT--NILTASGDQTIKIWDAEKKKCTGAL------MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 107 h~~~V~~l~~s~~~~--~l~s~~~dg~i~iwd~~~~~~~~~~------~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
-...|..++|.-+++ .|+..+.|..+....+....+...+ ......|..+.... ..|++|-.+|.+.+|
T Consensus 54 ~~~ris~l~~~~d~~tevl~~r~~~~~~~~~~~~E~~~~s~~~~~~~~~l~~~~I~gl~~~d---g~Litc~~sG~l~~~ 130 (412)
T KOG3881|consen 54 ELDRISSLLFGVDGETEVLNARSADDDLPKFVIEEFEISSSLDDAKTVSLGTKSIKGLKLAD---GTLITCVSSGNLQVR 130 (412)
T ss_pred hhhhhhhheeecCCceeEeeccccCcccccccccCCccccccccccccccccccccchhhcC---CEEEEEecCCcEEEE
Confidence 446788888876543 4555556777777777766554443 33455676666542 578888899999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEEEeccCccce
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKFWDTRNLKAQ 256 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~iwd~~~~~~~ 256 (512)
....+..-.. .. ....-...+..+.-++....++++|+.. ..+++||+...+.+
T Consensus 131 ~~k~~d~hss-----------------------~l-~~la~g~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qi 186 (412)
T KOG3881|consen 131 HDKSGDLHSS-----------------------KL-IKLATGPGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQI 186 (412)
T ss_pred eccCCccccc-----------------------cc-eeeecCCceeeeccCCCCCceEecCchhcccceeeeecccceee
Confidence 9885442110 00 1111224567777778888888888888 88999999988666
Q ss_pred ecccCCCccccccccccccCeeEEEeCCC--CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390 257 ITQAWPHAESSSAKETRLHGISSLSQDSN--GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH 334 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~--~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 334 (512)
+.......... ...-.-+++++.|-+. ...|++++.-+.+++||.+. ...++..+... +..++++...|.+++
T Consensus 187 w~aKNvpnD~L--~LrVPvW~tdi~Fl~g~~~~~fat~T~~hqvR~YDt~~-qRRPV~~fd~~--E~~is~~~l~p~gn~ 261 (412)
T KOG3881|consen 187 WSAKNVPNDRL--GLRVPVWITDIRFLEGSPNYKFATITRYHQVRLYDTRH-QRRPVAQFDFL--ENPISSTGLTPSGNF 261 (412)
T ss_pred eeccCCCCccc--cceeeeeeccceecCCCCCceEEEEecceeEEEecCcc-cCcceeEeccc--cCcceeeeecCCCcE
Confidence 65443332110 1112235778888887 88999999999999999974 45666666544 456778899999999
Q ss_pred EEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 335 ILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 335 l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
|++|..-|.+..||++.++.....+.+-.+.|+++..+|.. .+|+++|-|..|||+|+++.+++..
T Consensus 262 Iy~gn~~g~l~~FD~r~~kl~g~~~kg~tGsirsih~hp~~-~~las~GLDRyvRIhD~ktrkll~k 327 (412)
T KOG3881|consen 262 IYTGNTKGQLAKFDLRGGKLLGCGLKGITGSIRSIHCHPTH-PVLASCGLDRYVRIHDIKTRKLLHK 327 (412)
T ss_pred EEEecccchhheecccCceeeccccCCccCCcceEEEcCCC-ceEEeeccceeEEEeecccchhhhh
Confidence 99999999999999999888766788999999999999998 7999999999999999999776653
No 219
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.67 E-value=9.1e-14 Score=128.75 Aligned_cols=293 Identities=10% Similarity=0.090 Sum_probs=176.3
Q ss_pred CcEEE-EeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 65 SHIFA-VSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 65 ~~~la-tg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
+++++ +-..+|.|.|.|..+.+. +..+......-..+.|+|||+++++++.||.|.++|+.+++.+
T Consensus 5 ~~l~~V~~~~~~~v~viD~~t~~~-------------~~~i~~~~~~h~~~~~s~Dgr~~yv~~rdg~vsviD~~~~~~v 71 (369)
T PF02239_consen 5 GNLFYVVERGSGSVAVIDGATNKV-------------VARIPTGGAPHAGLKFSPDGRYLYVANRDGTVSVIDLATGKVV 71 (369)
T ss_dssp GGEEEEEEGGGTEEEEEETTT-SE-------------EEEEE-STTEEEEEE-TT-SSEEEEEETTSEEEEEETTSSSEE
T ss_pred ccEEEEEecCCCEEEEEECCCCeE-------------EEEEcCCCCceeEEEecCCCCEEEEEcCCCeEEEEECCcccEE
Confidence 34554 446689999999877643 5555554444455789999999999999999999999999999
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEE-EEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILV-SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
.++... ....++++++++ ++++ +...++.+.++|.++.+.......... ........
T Consensus 72 ~~i~~G-~~~~~i~~s~DG-~~~~v~n~~~~~v~v~D~~tle~v~~I~~~~~--------------------~~~~~~~R 129 (369)
T PF02239_consen 72 ATIKVG-GNPRGIAVSPDG-KYVYVANYEPGTVSVIDAETLEPVKTIPTGGM--------------------PVDGPESR 129 (369)
T ss_dssp EEEE-S-SEEEEEEE--TT-TEEEEEEEETTEEEEEETTT--EEEEEE--EE---------------------TTTS---
T ss_pred EEEecC-CCcceEEEcCCC-CEEEEEecCCCceeEeccccccceeecccccc--------------------cccccCCC
Confidence 998754 456789999999 5555 555789999999987665442211100 00013346
Q ss_pred EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEE
Q 010390 223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLY 301 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~ 301 (512)
+..+..++....++++--+.+.|.+.|....+.... .............|+|++++++++ ..++.|-++
T Consensus 130 v~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~----------~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~vi 199 (369)
T PF02239_consen 130 VAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV----------TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVI 199 (369)
T ss_dssp EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE----------EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEE
T ss_pred ceeEEecCCCCEEEEEEccCCeEEEEEeccccccce----------eeecccccccccccCcccceeeecccccceeEEE
Confidence 778888888887776654568888888776543322 122223446678999999987765 456678788
Q ss_pred EcccCCCCce------------Eee----------eece----------------------------eceeEEEEEECCC
Q 010390 302 NVLQLDKGPI------------QHF----------SGCR----------------------------IESFYVKSEICPN 331 (512)
Q Consensus 302 d~~~~~~~~~------------~~~----------~~~~----------------------------~~~~~~~~~~s~~ 331 (512)
|..+...... ..+ ..+. ....-.-+..+|+
T Consensus 200 D~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~glFi~thP~ 279 (369)
T PF02239_consen 200 DTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSGLGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGGLFIKTHPD 279 (369)
T ss_dssp ETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEBSSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS--EE--TT
T ss_pred eeccceEEEEeeccccccccccccccCCCcceEEeeccccceecccccCCccccchhhcCeEEEEEECCCCcceeecCCC
Confidence 8543211100 000 0000 0000012456899
Q ss_pred CCEEEEe----cCCCCEEEEecCCCCCCCceec-cccCCeEEEEeCCCCCCeEEEEeCCC-cEEEEeCCCCccccccc
Q 010390 332 ASHILSG----SSDGNAYVWQVNKPQADPIKLK-SHDGEVTAVNWCPNEAGKIVTSSDDY-TVRLWSLENSRCSSMRS 403 (512)
Q Consensus 332 ~~~l~~g----~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg-~i~vwd~~~~~~~~~~~ 403 (512)
++++.+. ...+.|.++|.++.+.. ..+. +-...+..+.|+++|....+|...++ .|.+||..+.+.+....
T Consensus 280 s~~vwvd~~~~~~~~~v~viD~~tl~~~-~~i~~~~~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~~~~i~ 356 (369)
T PF02239_consen 280 SRYVWVDTFLNPDADTVQVIDKKTLKVV-KTITPGPGKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKEKKRIP 356 (369)
T ss_dssp -SEEEEE-TT-SSHT-EEEEECCGTEEE-E-HHHHHT--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEEEEEEE
T ss_pred CccEEeeccCCCCCceEEEEECcCccee-EEEeccCCCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEEEEEEE
Confidence 9999887 44588999999887442 2222 22235999999999965566665555 89999999998777543
No 220
>KOG1272 consensus WD40-repeat-containing subunit of the 18S rRNA processing complex [RNA processing and modification]
Probab=99.66 E-value=2.2e-16 Score=139.36 Aligned_cols=272 Identities=17% Similarity=0.218 Sum_probs=194.6
Q ss_pred hhhcccceeeecCcccccccccCCCCCC---------ceeeeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEE
Q 010390 8 SFFLNVRSRELNGFKARKRPYFGDVVTD---------FTEIGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVS 78 (512)
Q Consensus 8 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~ 78 (512)
.....+++.+|++|..++.--......+ +-....|.+++. -...|..|.| -.+.+++|++- ...+.
T Consensus 120 ~k~f~L~l~eFGPY~~~ytrnGrhlllgGrKGHlAa~Dw~t~~L~~Ei~-v~Etv~Dv~~---LHneq~~AVAQ-K~y~y 194 (545)
T KOG1272|consen 120 TKHFDLSLPEFGPYHLDYTRNGRHLLLGGRKGHLAAFDWVTKKLHFEIN-VMETVRDVTF---LHNEQFFAVAQ-KKYVY 194 (545)
T ss_pred HhhccccccccCCeeeeecCCccEEEecCCccceeeeecccceeeeeee-hhhhhhhhhh---hcchHHHHhhh-hceEE
Confidence 3344577788888888665544443322 222223333332 2455777888 66788898886 56899
Q ss_pred EEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEe
Q 010390 79 LFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCS 158 (512)
Q Consensus 79 iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~ 158 (512)
|||-..- ++..++.| ..|..+.|.|..-+|++++..|.++.-|+.+|+.+..+....+.+..++-
T Consensus 195 vYD~~Gt--------------ElHClk~~-~~v~rLeFLPyHfLL~~~~~~G~L~Y~DVS~GklVa~~~t~~G~~~vm~q 259 (545)
T KOG1272|consen 195 VYDNNGT--------------ELHCLKRH-IRVARLEFLPYHFLLVAASEAGFLKYQDVSTGKLVASIRTGAGRTDVMKQ 259 (545)
T ss_pred EecCCCc--------------EEeehhhc-CchhhhcccchhheeeecccCCceEEEeechhhhhHHHHccCCccchhhc
Confidence 9996542 24445544 67999999999989999999999999999999999999988899999999
Q ss_pred eCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE
Q 010390 159 HPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA 238 (512)
Q Consensus 159 ~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 238 (512)
+|-+ ..+-+|...|+|.+|.....+.+. .+..|.++|.++++.++|.+++++
T Consensus 260 NP~N-aVih~GhsnGtVSlWSP~skePLv---------------------------KiLcH~g~V~siAv~~~G~YMaTt 311 (545)
T KOG1272|consen 260 NPYN-AVIHLGHSNGTVSLWSPNSKEPLV---------------------------KILCHRGPVSSIAVDRGGRYMATT 311 (545)
T ss_pred CCcc-ceEEEcCCCceEEecCCCCcchHH---------------------------HHHhcCCCcceEEECCCCcEEeec
Confidence 9987 899999999999999987654332 566889999999999999999998
Q ss_pred eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc-cCCCCceEeeeec
Q 010390 239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL-QLDKGPIQHFSGC 317 (512)
Q Consensus 239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~-~~~~~~~~~~~~~ 317 (512)
| .|..++|||+++...+.+... ..+...+++|..| +++.+....+.+|.=. .........+..|
T Consensus 312 G-~Dr~~kIWDlR~~~ql~t~~t------------p~~a~~ls~Sqkg--lLA~~~G~~v~iw~d~~~~s~~~~~pYm~H 376 (545)
T KOG1272|consen 312 G-LDRKVKIWDLRNFYQLHTYRT------------PHPASNLSLSQKG--LLALSYGDHVQIWKDALKGSGHGETPYMNH 376 (545)
T ss_pred c-cccceeEeeeccccccceeec------------CCCcccccccccc--ceeeecCCeeeeehhhhcCCCCCCcchhhh
Confidence 8 799999999998876554322 2446677887655 4445566688999632 2111222233344
Q ss_pred eeceeEEEEEECCCCCEEEEecCCC
Q 010390 318 RIESFYVKSEICPNASHILSGSSDG 342 (512)
Q Consensus 318 ~~~~~~~~~~~s~~~~~l~~g~~dg 342 (512)
.....|..+.|.|-...|-.|...|
T Consensus 377 ~~~~~V~~l~FcP~EDvLGIGH~~G 401 (545)
T KOG1272|consen 377 RCGGPVEDLRFCPYEDVLGIGHAGG 401 (545)
T ss_pred ccCcccccceeccHHHeeeccccCC
Confidence 4445666677777666665555444
No 221
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.66 E-value=2.6e-14 Score=137.38 Aligned_cols=236 Identities=16% Similarity=0.123 Sum_probs=153.8
Q ss_pred CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCC
Q 010390 75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTG 151 (512)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~ 151 (512)
..|.+||..... .+.+..|...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+
T Consensus 184 ~~l~i~D~~g~~--------------~~~lt~~~~~v~~p~wSpDg~~la~~s~~~~~~~l~~~dl~~g~~~~-l~~~~g 248 (433)
T PRK04922 184 YALQVADSDGYN--------------PQTILRSAEPILSPAWSPDGKKLAYVSFERGRSAIYVQDLATGQREL-VASFRG 248 (433)
T ss_pred EEEEEECCCCCC--------------ceEeecCCCccccccCCCCCCEEEEEecCCCCcEEEEEECCCCCEEE-eccCCC
Confidence 368899986432 33455677889999999999999977643 469999998876543 333344
Q ss_pred CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390 152 SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL 229 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 229 (512)
...+..|+|++..++++.+.+| .|.+||+.+++... +..+........|+
T Consensus 249 ~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~----------------------------lt~~~~~~~~~~~s 300 (433)
T PRK04922 249 INGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR----------------------------LTNHFGIDTEPTWA 300 (433)
T ss_pred CccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE----------------------------CccCCCCccceEEC
Confidence 5567899999955556666666 58889987654211 11222344668999
Q ss_pred ecCCEEEEEeecCCe--EEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEcc
Q 010390 230 KDEVSIATASAVNSI--VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVL 304 (512)
Q Consensus 230 ~~~~~l~~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~ 304 (512)
|+++.+++++..+|. |+++|+.+++.... ..........+|+|+|++++..+.++ .|.+||+.
T Consensus 301 pDG~~l~f~sd~~g~~~iy~~dl~~g~~~~l------------t~~g~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~ 368 (433)
T PRK04922 301 PDGKSIYFTSDRGGRPQIYRVAASGGSAERL------------TFQGNYNARASVSPDGKKIAMVHGSGGQYRIAVMDLS 368 (433)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCCeEEe------------ecCCCCccCEEECCCCCEEEEEECCCCceeEEEEECC
Confidence 999999887655554 66666665543211 11112344689999999998765443 69999986
Q ss_pred cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390 305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP 373 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~ 373 (512)
+.... .+.... ......|+|||++|+..+.+ +.|.++++.... ...+..+.+.+...+|+|
T Consensus 369 ~g~~~---~Lt~~~---~~~~p~~spdG~~i~~~s~~~g~~~L~~~~~~g~~--~~~l~~~~g~~~~p~wsp 432 (433)
T PRK04922 369 TGSVR---TLTPGS---LDESPSFAPNGSMVLYATREGGRGVLAAVSTDGRV--RQRLVSADGEVREPAWSP 432 (433)
T ss_pred CCCeE---ECCCCC---CCCCceECCCCCEEEEEEecCCceEEEEEECCCCc--eEEcccCCCCCCCCccCC
Confidence 54322 222111 12246899999988766553 357777775432 244555567788888887
No 222
>KOG2139 consensus WD40 repeat protein [General function prediction only]
Probab=99.66 E-value=2.1e-14 Score=123.21 Aligned_cols=266 Identities=11% Similarity=0.138 Sum_probs=167.5
Q ss_pred CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390 151 GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230 (512)
Q Consensus 151 ~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (512)
..+..++|++.- ..++++..|-.|++||-.... .... .......|+|++|-|
T Consensus 99 ~dlr~~aWhqH~-~~fava~nddvVriy~ksst~-pt~L--------------------------ks~sQrnvtclawRP 150 (445)
T KOG2139|consen 99 IDLRGVAWHQHI-IAFAVATNDDVVRIYDKSSTC-PTKL--------------------------KSVSQRNVTCLAWRP 150 (445)
T ss_pred cceeeEeechhh-hhhhhhccCcEEEEeccCCCC-Ccee--------------------------cchhhcceeEEEecc
Confidence 467889999865 778999999999999977522 2111 112245799999999
Q ss_pred cCCEEEEEeecCCeEEEEeccCccceeccc---CCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccC
Q 010390 231 DEVSIATASAVNSIVKFWDTRNLKAQITQA---WPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQL 306 (512)
Q Consensus 231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~---~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~ 306 (512)
.+...++.|+ .+.|.+|............ ..+........+| ..|++|.|.+||..+++++ .|..|.|||..++
T Consensus 151 lsaselavgC-r~gIciW~~s~tln~~r~~~~~s~~~~qvl~~pgh-~pVtsmqwn~dgt~l~tAS~gsssi~iWdpdtg 228 (445)
T KOG2139|consen 151 LSASELAVGC-RAGICIWSDSRTLNANRNIRMMSTHHLQVLQDPGH-NPVTSMQWNEDGTILVTASFGSSSIMIWDPDTG 228 (445)
T ss_pred CCcceeeeee-cceeEEEEcCcccccccccccccccchhheeCCCC-ceeeEEEEcCCCCEEeecccCcceEEEEcCCCC
Confidence 8776666675 5669999876432222111 1111111122333 6799999999999999888 5578999999887
Q ss_pred CCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390 307 DKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 386 (512)
...++...... .+.-+.||||+.+|++++-|+..++|+............ ..+.|....|+|+|..+|++++..-
T Consensus 229 ~~~pL~~~glg----g~slLkwSPdgd~lfaAt~davfrlw~e~q~wt~erw~l-gsgrvqtacWspcGsfLLf~~sgsp 303 (445)
T KOG2139|consen 229 QKIPLIPKGLG----GFSLLKWSPDGDVLFAATCDAVFRLWQENQSWTKERWIL-GSGRVQTACWSPCGSFLLFACSGSP 303 (445)
T ss_pred CcccccccCCC----ceeeEEEcCCCCEEEEecccceeeeehhcccceecceec-cCCceeeeeecCCCCEEEEEEcCCc
Confidence 77766633332 244589999999999999999999996654433222222 3458999999999976777777665
Q ss_pred cEEEEeCCCCcccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCCC
Q 010390 387 TVRLWSLENSRCSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDPK 454 (512)
Q Consensus 387 ~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~ 454 (512)
.++--.+.....+. ..+...+.........++ .+.+......... +.++|+|.|.++++......
T Consensus 304 ~lysl~f~~~~~~~-~~~~~~k~~lliaDL~e~-ti~ag~~l~cgea-q~lawDpsGeyLav~fKg~~ 368 (445)
T KOG2139|consen 304 RLYSLTFDGEDSVF-LRPQSIKRVLLIADLQEV-TICAGQRLCCGEA-QCLAWDPSGEYLAVIFKGQS 368 (445)
T ss_pred eEEEEeecCCCccc-cCcccceeeeeeccchhh-hhhcCcccccCcc-ceeeECCCCCEEEEEEcCCc
Confidence 55444443322221 113322222111111111 1111111122222 27899999999998765554
No 223
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.65 E-value=7.9e-14 Score=134.29 Aligned_cols=235 Identities=13% Similarity=0.098 Sum_probs=154.0
Q ss_pred CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---CCcEEEEeCCCCeeeecccCcCC
Q 010390 75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---DQTIKIWDAEKKKCTGALMGHTG 151 (512)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~ 151 (512)
..|.++|.++.. .+.+..|...+.+.+|+|||+.|+..+. +..|.+||+.+++.. .+..+.+
T Consensus 182 ~~l~~~d~dg~~--------------~~~lt~~~~~v~~p~wSpDG~~lay~s~~~g~~~i~~~dl~~g~~~-~l~~~~g 246 (435)
T PRK05137 182 KRLAIMDQDGAN--------------VRYLTDGSSLVLTPRFSPNRQEITYMSYANGRPRVYLLDLETGQRE-LVGNFPG 246 (435)
T ss_pred eEEEEECCCCCC--------------cEEEecCCCCeEeeEECCCCCEEEEEEecCCCCEEEEEECCCCcEE-EeecCCC
Confidence 368888875442 3445678889999999999999987654 468999999888653 3444566
Q ss_pred CEEEEEeeCCCCCeEEEEeCCCc--EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390 152 SIKSLCSHPTNSDILVSGSRDGS--FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL 229 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 229 (512)
.+.+.+|+|++..++++.+.++. |.+||+.++... .+..+........|+
T Consensus 247 ~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~----------------------------~Lt~~~~~~~~~~~s 298 (435)
T PRK05137 247 MTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTT----------------------------RLTDSPAIDTSPSYS 298 (435)
T ss_pred cccCcEECCCCCEEEEEEecCCCceEEEEECCCCceE----------------------------EccCCCCccCceeEc
Confidence 77889999999555567776665 666787655321 112233345678999
Q ss_pred ecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcc
Q 010390 230 KDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVL 304 (512)
Q Consensus 230 ~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~ 304 (512)
|+++.++.++..+| .|+++|+..+.... .......+....|+|+|+.|+....+ ..|.+||+.
T Consensus 299 pDG~~i~f~s~~~g~~~Iy~~d~~g~~~~~------------lt~~~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~ 366 (435)
T PRK05137 299 PDGSQIVFESDRSGSPQLYVMNADGSNPRR------------ISFGGGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPD 366 (435)
T ss_pred CCCCEEEEEECCCCCCeEEEEECCCCCeEE------------eecCCCcccCeEECCCCCEEEEEEcCCCceEEEEEECC
Confidence 99999987664444 67788876654322 11122345678899999999877643 368888874
Q ss_pred cCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC------CCEEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390 305 QLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD------GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCP 373 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~ 373 (512)
... ...+... ..+....|+|||++|+..+.+ ..++++++..... ..+. ..+.+...+|+|
T Consensus 367 ~~~---~~~lt~~---~~~~~p~~spDG~~i~~~~~~~~~~~~~~L~~~dl~g~~~--~~l~-~~~~~~~p~Wsp 432 (435)
T PRK05137 367 GSG---ERILTSG---FLVEGPTWAPNGRVIMFFRQTPGSGGAPKLYTVDLTGRNE--REVP-TPGDASDPAWSP 432 (435)
T ss_pred CCc---eEeccCC---CCCCCCeECCCCCEEEEEEccCCCCCcceEEEEECCCCce--EEcc-CCCCccCcccCC
Confidence 422 1222211 123457899999998765432 2577778765543 2332 244567778876
No 224
>KOG0322 consensus G-protein beta subunit-like protein GNB1L, contains WD repeats [General function prediction only]
Probab=99.65 E-value=4.6e-15 Score=121.70 Aligned_cols=288 Identities=13% Similarity=0.154 Sum_probs=182.1
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
+...++.|.+.|+++.|-.++ +|.+|..-|.|++|++++......++ .|...|+.+.-.|. ..+.+-+.|+.+.+|
T Consensus 6 P~fvLRp~~~~v~s~~fqa~~-rL~sg~~~G~V~~w~lqt~r~~~~~r~~g~~~it~lq~~p~--d~l~tqgRd~~L~lw 82 (323)
T KOG0322|consen 6 PFFVLRPHSSSVTSVLFQANE-RLMSGLSVGIVKMWVLQTERDLPLIRLFGRLFITNLQSIPN--DSLDTQGRDPLLILW 82 (323)
T ss_pred CeeEeccccchheehhhccch-hhhcccccceEEEEEeecCccchhhhhhccceeeceeecCC--cchhhcCCCceEEEE
Confidence 356677999999999998765 49999999999999999998888888 56778999988885 468899999999999
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec-----CC---EEEEEeecCC-eEEEEe
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD-----EV---SIATASAVNS-IVKFWD 249 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-----~~---~l~~~g~~dg-~i~iwd 249 (512)
++....... .|.-.++++.|.+. .+ .++..-++.. .+.+-|
T Consensus 83 ~ia~s~~i~------------------------------i~Si~~nslgFCrfSl~~~~k~~eqll~yp~rgsde~h~~D 132 (323)
T KOG0322|consen 83 TIAYSAFIS------------------------------IHSIVVNSLGFCRFSLVKKPKNSEQLLEYPSRGSDETHKQD 132 (323)
T ss_pred EccCcceEE------------------------------EeeeeccccccccceeccCCCcchhheecCCcccchhhhhc
Confidence 997543221 11122333333321 10 1111000000 011111
Q ss_pred ccCccceecccCCCccccccccccccCeeEEEeCC-CC--CEEEEEecCCeEEEEEcccCCCCc------eEeeeeceec
Q 010390 250 TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NG--VFLTASCMDHRIYLYNVLQLDKGP------IQHFSGCRIE 320 (512)
Q Consensus 250 ~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~--~~l~~~~~dg~i~i~d~~~~~~~~------~~~~~~~~~~ 320 (512)
......+.. .+. ......+.+.+..+.. ++ -+|++|..+|.+.+||+....... ..........
T Consensus 133 ~g~~tqv~i--~dd-----~~~~Klgsvmc~~~~~~c~s~~lllaGyEsghvv~wd~S~~~~~~~~~~~~kv~~~~ash~ 205 (323)
T KOG0322|consen 133 GGDTTQVQI--ADD-----SERSKLGSVMCQDKDHACGSTFLLLAGYESGHVVIWDLSTGDKIIQLPQSSKVESPNASHK 205 (323)
T ss_pred cCccceeEc--cCc-----hhccccCceeeeeccccccceEEEEEeccCCeEEEEEccCCceeeccccccccccchhhcc
Confidence 111111110 000 2233445677776543 22 256678899999999997642110 1111222344
Q ss_pred eeEEEEEECCCCCEEEEecCCCCEEEEecCCCC--CCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 321 SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ--ADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~--~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
..+.++.|.+.-..=++|+.+..+..|+++... ..+. ...-..-.|..+..-||+ +.+||+|.|+.||||+.++..
T Consensus 206 qpvlsldyas~~~rGisgga~dkl~~~Sl~~s~gslq~~~e~~lknpGv~gvrIRpD~-KIlATAGWD~RiRVyswrtl~ 284 (323)
T KOG0322|consen 206 QPVLSLDYASSCDRGISGGADDKLVMYSLNHSTGSLQIRKEITLKNPGVSGVRIRPDG-KILATAGWDHRIRVYSWRTLN 284 (323)
T ss_pred CcceeeeechhhcCCcCCCccccceeeeeccccCcccccceEEecCCCccceEEccCC-cEEeecccCCcEEEEEeccCC
Confidence 567778888765566778888889999887542 2211 122223468899999999 999999999999999999988
Q ss_pred ccccccCccccceeeeeccchhcccccCCCCcccccCCCCcCCCchhcccCCCCCC
Q 010390 398 CSSMRSPSSVRRRVMAIPSTECRKLFMNGEPGWLAKGSDRSYNSDDVLNQINSSDP 453 (512)
Q Consensus 398 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~ 453 (512)
.+.++.. +. ..++ +++|+||-.+++.++...
T Consensus 285 pLAVLky--------------------Hs----agvn-~vAfspd~~lmAaaskD~ 315 (323)
T KOG0322|consen 285 PLAVLKY--------------------HS----AGVN-AVAFSPDCELMAAASKDA 315 (323)
T ss_pred chhhhhh--------------------hh----ccee-EEEeCCCCchhhhccCCc
Confidence 7776332 11 2223 778888877777776544
No 225
>KOG4497 consensus Uncharacterized conserved protein WDR8, contains WD repeats [General function prediction only]
Probab=99.64 E-value=1.3e-13 Score=116.81 Aligned_cols=297 Identities=13% Similarity=0.171 Sum_probs=181.9
Q ss_pred EEEEecCCCcEE-EEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE-EEeCCCcEEE
Q 010390 57 SFCKTSKNSHIF-AVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL-TASGDQTIKI 134 (512)
Q Consensus 57 ~~~~~s~~~~~l-atg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~-s~~~dg~i~i 134 (512)
.+..|..|..++ ...+.|+.|.+|++...+- ...+.....++.+++|||||+.|+ +...|-.|.|
T Consensus 52 ~yieW~ads~~ilC~~yk~~~vqvwsl~Qpew-------------~ckIdeg~agls~~~WSPdgrhiL~tseF~lriTV 118 (447)
T KOG4497|consen 52 VYIEWKADSCHILCVAYKDPKVQVWSLVQPEW-------------YCKIDEGQAGLSSISWSPDGRHILLTSEFDLRITV 118 (447)
T ss_pred hheeeeccceeeeeeeeccceEEEEEeeccee-------------EEEeccCCCcceeeeECCCcceEeeeecceeEEEE
Confidence 333447777654 4558899999999865432 455667778999999999997766 6666889999
Q ss_pred EeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE--------E------eCCCCCCCCCccccceeeeccc
Q 010390 135 WDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI--------W------DLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 135 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v--------w------d~~~~~~~~~~~~~~~~~~~~~ 200 (512)
|.+.+.+... ++..+..+..++|+|++ ++.+.++.-..... | ++.+-... ....
T Consensus 119 WSL~t~~~~~-~~~pK~~~kg~~f~~dg-~f~ai~sRrDCkdyv~i~~c~~W~ll~~f~~dT~Dlt----------gieW 186 (447)
T KOG4497|consen 119 WSLNTQKGYL-LPHPKTNVKGYAFHPDG-QFCAILSRRDCKDYVQISSCKAWILLKEFKLDTIDLT----------GIEW 186 (447)
T ss_pred EEeccceeEE-ecccccCceeEEECCCC-ceeeeeecccHHHHHHHHhhHHHHHHHhcCCCccccc----------CceE
Confidence 9998877654 33334567889999988 66666554211111 1 11111100 0011
Q ss_pred cccccccccccccee----cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc-----------------
Q 010390 201 VKGAHLLSQSKRVSR----RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ----------------- 259 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~----~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~----------------- 259 (512)
.+++........... ...-.-.+..++|+|.++.+++ |+.|+.+++.+--+.+.....
T Consensus 187 sPdg~~laVwd~~Leykv~aYe~~lG~k~v~wsP~~qflav-GsyD~~lrvlnh~tWk~f~eflhl~s~~dp~~~~~~ke 265 (447)
T KOG4497|consen 187 SPDGNWLAVWDNVLEYKVYAYERGLGLKFVEWSPCNQFLAV-GSYDQMLRVLNHFTWKPFGEFLHLCSYHDPTLHLLEKE 265 (447)
T ss_pred CCCCcEEEEecchhhheeeeeeeccceeEEEeccccceEEe-eccchhhhhhceeeeeehhhhccchhccCchhhhhhhh
Confidence 111111111111000 1112246888999999988887 778998887543221111000
Q ss_pred ------------cCCCc--------------------------cccccccccccCeeEEEeCCCCCEEEEEecC--CeEE
Q 010390 260 ------------AWPHA--------------------------ESSSAKETRLHGISSLSQDSNGVFLTASCMD--HRIY 299 (512)
Q Consensus 260 ------------~~~~~--------------------------~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d--g~i~ 299 (512)
..+.. .+........-++.-++|++|..++++-... +.+.
T Consensus 266 ~~~~~ql~~~cLsf~p~~~~a~~~~~se~~YE~~~~pv~~~~lkp~tD~pnPk~g~g~lafs~Ds~y~aTrnd~~PnalW 345 (447)
T KOG4497|consen 266 TFSIVQLLHHCLSFTPTDLEAHIWEESETIYEQQMTPVKVHKLKPPTDFPNPKCGAGKLAFSCDSTYAATRNDKYPNALW 345 (447)
T ss_pred hcchhhhcccccccCCCccccCccccchhhhhhhhcceeeecccCCCCCCCcccccceeeecCCceEEeeecCCCCceEE
Confidence 00000 0111222334557789999999999887543 7899
Q ss_pred EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeE
Q 010390 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKI 379 (512)
Q Consensus 300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l 379 (512)
+||++..+...+..- ...+....|+|....|+.+.....+++|........ ...+..-.|..+.|..+| ..+
T Consensus 346 ~Wdlq~l~l~avLiQ-----k~piraf~WdP~~prL~vctg~srLY~W~psg~~~V--~vP~~GF~i~~l~W~~~g-~~i 417 (447)
T KOG4497|consen 346 LWDLQNLKLHAVLIQ-----KHPIRAFEWDPGRPRLVVCTGKSRLYFWAPSGPRVV--GVPKKGFNIQKLQWLQPG-EFI 417 (447)
T ss_pred EEechhhhhhhhhhh-----ccceeEEEeCCCCceEEEEcCCceEEEEcCCCceEE--ecCCCCceeeeEEecCCC-cEE
Confidence 999976433222211 234677899999888888777778999988764332 222233579999999999 788
Q ss_pred EEEeCCCc
Q 010390 380 VTSSDDYT 387 (512)
Q Consensus 380 ~s~~~dg~ 387 (512)
+-.+.|.-
T Consensus 418 ~l~~kDaf 425 (447)
T KOG4497|consen 418 VLCGKDAF 425 (447)
T ss_pred EEEcCCce
Confidence 88888863
No 226
>KOG2111 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=99.64 E-value=1.5e-13 Score=116.12 Aligned_cols=241 Identities=13% Similarity=0.188 Sum_probs=158.2
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC--EEEEEeeCCCCCeEEEEeCC------CcEEEEeCC
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS--IKSLCSHPTNSDILVSGSRD------GSFAIWDLR 181 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~--v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~ 181 (512)
...+++|+.|...++.|..+| .+||+.+--+....-+.+.+. +..+-|-. + .+.+.|+.+ ..|.|||=.
T Consensus 7 ~~lsvs~NQD~ScFava~~~G-friyn~~P~ke~~~r~~~~~G~~~veMLfR~-N-~laLVGGg~~pky~pNkviIWDD~ 83 (346)
T KOG2111|consen 7 KTLSVSFNQDHSCFAVATDTG-FRIYNCDPFKESASRQFIDGGFKIVEMLFRS-N-YLALVGGGSRPKYPPNKVIIWDDL 83 (346)
T ss_pred ceeEEEEccCCceEEEEecCc-eEEEecCchhhhhhhccccCchhhhhHhhhh-c-eEEEecCCCCCCCCCceEEEEecc
Confidence 344599999999999998888 899998764443333222222 22232322 1 333344433 479999933
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-ccceeccc
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-LKAQITQA 260 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~~~~~~~~ 260 (512)
...+... .....+|.++.+.++. ++++ ..+.|++|...+ .+......
T Consensus 84 k~~~i~e----------------------------l~f~~~I~~V~l~r~r--iVvv--l~~~I~VytF~~n~k~l~~~e 131 (346)
T KOG2111|consen 84 KERCIIE----------------------------LSFNSEIKAVKLRRDR--IVVV--LENKIYVYTFPDNPKLLHVIE 131 (346)
T ss_pred cCcEEEE----------------------------EEeccceeeEEEcCCe--EEEE--ecCeEEEEEcCCChhheeeee
Confidence 2222211 1234578888887663 4433 488999999884 33333221
Q ss_pred CCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390 261 WPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 261 ~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
......+..+++-..+..+|+.- -.-|.|+|-|+......+...+..|. +.+.+++.+.+|..+|+++
T Consensus 132 ---------t~~NPkGlC~~~~~~~k~~LafPg~k~GqvQi~dL~~~~~~~p~~I~AH~--s~Iacv~Ln~~Gt~vATaS 200 (346)
T KOG2111|consen 132 ---------TRSNPKGLCSLCPTSNKSLLAFPGFKTGQVQIVDLASTKPNAPSIINAHD--SDIACVALNLQGTLVATAS 200 (346)
T ss_pred ---------cccCCCceEeecCCCCceEEEcCCCccceEEEEEhhhcCcCCceEEEccc--CceeEEEEcCCccEEEEec
Confidence 11112234444444444555543 35699999999776554445555554 5588899999999999999
Q ss_pred CCCC-EEEEecCCCCCCCceeccc-cCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 340 SDGN-AYVWQVNKPQADPIKLKSH-DGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 340 ~dg~-i~iw~~~~~~~~~~~~~~h-~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
..|+ |||||..++......-+|- ...|.+++|+|+. .+|+.+|+-|+|+|+.+....
T Consensus 201 tkGTLIRIFdt~~g~~l~E~RRG~d~A~iy~iaFSp~~-s~LavsSdKgTlHiF~l~~~~ 259 (346)
T KOG2111|consen 201 TKGTLIRIFDTEDGTLLQELRRGVDRADIYCIAFSPNS-SWLAVSSDKGTLHIFSLRDTE 259 (346)
T ss_pred cCcEEEEEEEcCCCcEeeeeecCCchheEEEEEeCCCc-cEEEEEcCCCeEEEEEeecCC
Confidence 9998 8999999988743322332 3579999999999 899999999999999998754
No 227
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.64 E-value=6.7e-14 Score=134.06 Aligned_cols=225 Identities=17% Similarity=0.184 Sum_probs=143.0
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
.+..+...+.+.+|+|||+.|+..+.+ ..|.+||+.+++... +....+.+.+..|+|++..++++.+.+|...+|.
T Consensus 190 ~l~~~~~~v~~p~wSPDG~~la~~s~~~~~~~I~~~dl~~g~~~~-l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~ 268 (427)
T PRK02889 190 SALSSPEPIISPAWSPDGTKLAYVSFESKKPVVYVHDLATGRRRV-VANFKGSNSAPAWSPDGRTLAVALSRDGNSQIYT 268 (427)
T ss_pred EeccCCCCcccceEcCCCCEEEEEEccCCCcEEEEEECCCCCEEE-eecCCCCccceEECCCCCEEEEEEccCCCceEEE
Confidence 345677889999999999999876643 459999999886543 3333455678899999954555778888877776
Q ss_pred CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Ccccee
Q 010390 180 LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQI 257 (512)
Q Consensus 180 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~ 257 (512)
++..... ...+..+........|+|||+.++.++..+|...+|.+. ++....
T Consensus 269 ~d~~~~~--------------------------~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~~~ 322 (427)
T PRK02889 269 VNADGSG--------------------------LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAAQR 322 (427)
T ss_pred EECCCCC--------------------------cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCceEE
Confidence 5421100 011122233455678999999998766555666666554 332211
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASH 334 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~ 334 (512)
............|+|+|++|+..+.++ .|.+||+...... .+.... ......|+|||++
T Consensus 323 ------------lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~---~lt~~~---~~~~p~~spdg~~ 384 (427)
T PRK02889 323 ------------VTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVT---ALTDTT---RDESPSFAPNGRY 384 (427)
T ss_pred ------------EecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeE---EccCCC---CccCceECCCCCE
Confidence 111112234578999999998777554 6999998664322 222111 1234789999999
Q ss_pred EEEecCCC-C--EEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390 335 ILSGSSDG-N--AYVWQVNKPQADPIKLKSHDGEVTAVNWCPN 374 (512)
Q Consensus 335 l~~g~~dg-~--i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~ 374 (512)
|+..+.++ . +++.++.. .. ...+..+.+.+...+|+|-
T Consensus 385 l~~~~~~~g~~~l~~~~~~g-~~-~~~l~~~~g~~~~p~wsp~ 425 (427)
T PRK02889 385 ILYATQQGGRSVLAAVSSDG-RI-KQRLSVQGGDVREPSWGPF 425 (427)
T ss_pred EEEEEecCCCEEEEEEECCC-Cc-eEEeecCCCCCCCCccCCC
Confidence 87766543 3 55555533 22 3445556777888899874
No 228
>KOG2394 consensus WD40 protein DMR-N9 [General function prediction only]
Probab=99.62 E-value=9.6e-14 Score=125.20 Aligned_cols=193 Identities=11% Similarity=0.159 Sum_probs=133.2
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeeeccc----CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc---
Q 010390 118 KEDTNILTASGDQTIKIWDAEKKKCTGALM----GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC--- 190 (512)
Q Consensus 118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~----~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~--- 190 (512)
|.+--|+.|-.-|.|.+.|....+....+. -.+..|+|+.|-|.+..+++.+-.+|.+.+||...........
T Consensus 183 ~~g~dllIGf~tGqvq~idp~~~~~sklfne~r~i~ktsvT~ikWvpg~~~~Fl~a~~sGnlyly~~~~~~~~t~p~~~~ 262 (636)
T KOG2394|consen 183 PKGLDLLIGFTTGQVQLIDPINFEVSKLFNEERLINKSSVTCIKWVPGSDSLFLVAHASGNLYLYDKEIVCGATAPSYQA 262 (636)
T ss_pred CCCcceEEeeccCceEEecchhhHHHHhhhhcccccccceEEEEEEeCCCceEEEEEecCceEEeeccccccCCCCcccc
Confidence 466678888888999999876633222221 1346899999999888899999999999999874222111110
Q ss_pred -ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccc
Q 010390 191 -AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 191 -~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
.+.-.+.....+... ....+..+....+.|...+|+|||++|++++ .||.++|||..+.+..- .
T Consensus 263 ~k~~~~f~i~t~ksk~---~rNPv~~w~~~~g~in~f~FS~DG~~LA~VS-qDGfLRvF~fdt~eLlg-----------~ 327 (636)
T KOG2394|consen 263 LKDGDQFAILTSKSKK---TRNPVARWHIGEGSINEFAFSPDGKYLATVS-QDGFLRIFDFDTQELLG-----------V 327 (636)
T ss_pred cCCCCeeEEeeeeccc---cCCccceeEeccccccceeEcCCCceEEEEe-cCceEEEeeccHHHHHH-----------H
Confidence 000011111111000 1122334445566899999999999999977 89999999999876654 3
Q ss_pred ccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEEC
Q 010390 270 KETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC 329 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s 329 (512)
....-++..|++|+|||+++++|+.|.-|.||.+.. ......++.+.++|..++|+
T Consensus 328 mkSYFGGLLCvcWSPDGKyIvtGGEDDLVtVwSf~e----rRVVARGqGHkSWVs~VaFD 383 (636)
T KOG2394|consen 328 MKSYFGGLLCVCWSPDGKYIVTGGEDDLVTVWSFEE----RRVVARGQGHKSWVSVVAFD 383 (636)
T ss_pred HHhhccceEEEEEcCCccEEEecCCcceEEEEEecc----ceEEEeccccccceeeEeec
Confidence 445557899999999999999999999999999854 23344555556788888887
No 229
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.62 E-value=2.2e-13 Score=123.86 Aligned_cols=293 Identities=11% Similarity=0.136 Sum_probs=194.6
Q ss_pred ecCCccCCcceEEEEEecCCCcE-EEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC--CcEEEEEEecCCC
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHI-FAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ--NAIFDLCWIKEDT 121 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~-latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~s~~~~ 121 (512)
+-.+|....+.|.. +|||+| +|+|.....|++||+..... .+..|. ..|.-.-.+.|-.
T Consensus 46 Qdfe~p~ast~ik~---s~DGqY~lAtG~YKP~ikvydlanLSL---------------KFERhlDae~V~feiLsDD~S 107 (703)
T KOG2321|consen 46 QDFEMPTASTRIKV---SPDGQYLLATGTYKPQIKVYDLANLSL---------------KFERHLDAEVVDFEILSDDYS 107 (703)
T ss_pred HhcCCccccceeEe---cCCCcEEEEecccCCceEEEEccccee---------------eeeecccccceeEEEeccchh
Confidence 33468888899999 999995 67788999999999976532 233332 3344444444555
Q ss_pred EEEEEeCCCcEEEEeCCCCeeee-cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTG-ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~-~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
.++.-..|.+|.+-.- -|.... .+. ..-..++++.-...++ .++....|.-++++.+.-+.
T Consensus 108 K~v~L~~DR~IefHak-~G~hy~~RIP---~~GRDm~y~~~scDly-~~gsg~evYRlNLEqGrfL~------------- 169 (703)
T KOG2321|consen 108 KSVFLQNDRTIEFHAK-YGRHYRTRIP---KFGRDMKYHKPSCDLY-LVGSGSEVYRLNLEQGRFLN------------- 169 (703)
T ss_pred hheEeecCceeeehhh-cCeeeeeecC---cCCccccccCCCccEE-EeecCcceEEEEcccccccc-------------
Confidence 5665667777776542 232111 111 1233455554442344 44444578888888766444
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
.+....+.++++..++....+++ |+.+|.|..||.+.........................|+++
T Consensus 170 --------------P~~~~~~~lN~v~in~~hgLla~-Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal 234 (703)
T KOG2321|consen 170 --------------PFETDSGELNVVSINEEHGLLAC-GTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTAL 234 (703)
T ss_pred --------------ccccccccceeeeecCccceEEe-cccCceEEEecchhhhhheeeecccccCCCccccccCcceEE
Confidence 33334468899999887766655 778999999999987765544333321111223333459999
Q ss_pred EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCC--CCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPN--ASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~--~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
.|+.+|-.+++|..+|.+.|||++... ++ ....|.....+..+.|.+. ++.+++. +...++|||-.+++.. ..
T Consensus 235 ~F~d~gL~~aVGts~G~v~iyDLRa~~--pl-~~kdh~~e~pi~~l~~~~~~~q~~v~S~-Dk~~~kiWd~~~Gk~~-as 309 (703)
T KOG2321|consen 235 KFRDDGLHVAVGTSTGSVLIYDLRASK--PL-LVKDHGYELPIKKLDWQDTDQQNKVVSM-DKRILKIWDECTGKPM-AS 309 (703)
T ss_pred EecCCceeEEeeccCCcEEEEEcccCC--ce-eecccCCccceeeecccccCCCceEEec-chHHhhhcccccCCce-ee
Confidence 999999999999999999999998743 22 2234555667788888765 3445554 3567999999988764 23
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
. .....++.+++-|++ .+++++-.++.+..|=+..
T Consensus 310 i-Ept~~lND~C~~p~s-Gm~f~Ane~~~m~~yyiP~ 344 (703)
T KOG2321|consen 310 I-EPTSDLNDFCFVPGS-GMFFTANESSKMHTYYIPS 344 (703)
T ss_pred c-cccCCcCceeeecCC-ceEEEecCCCcceeEEccc
Confidence 3 334569999999998 8999999988887776554
No 230
>KOG2321 consensus WD40 repeat protein [General function prediction only]
Probab=99.61 E-value=9.7e-14 Score=126.16 Aligned_cols=256 Identities=12% Similarity=0.109 Sum_probs=173.8
Q ss_pred cCCCcEEEEEEecCCCEEE-EEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 106 AHQNAIFDLCWIKEDTNIL-TASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~-s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
.|...-+.|..+|||+|++ +|..--.|++||+.+-.+. +..|. ..+..+....++-..++--..|.+|-+...-..
T Consensus 49 e~p~ast~ik~s~DGqY~lAtG~YKP~ikvydlanLSLK--FERhlDae~V~feiLsDD~SK~v~L~~DR~IefHak~G~ 126 (703)
T KOG2321|consen 49 EMPTASTRIKVSPDGQYLLATGTYKPQIKVYDLANLSLK--FERHLDAEVVDFEILSDDYSKSVFLQNDRTIEFHAKYGR 126 (703)
T ss_pred CCccccceeEecCCCcEEEEecccCCceEEEEcccceee--eeecccccceeEEEeccchhhheEeecCceeeehhhcCe
Confidence 5778899999999999976 7777889999999876443 33332 233333333333245555566777765432211
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
... ......-.+++++.-..-++++| ....|+-+++..++-+.
T Consensus 127 hy~------------------------------~RIP~~GRDm~y~~~scDly~~g-sg~evYRlNLEqGrfL~------ 169 (703)
T KOG2321|consen 127 HYR------------------------------TRIPKFGRDMKYHKPSCDLYLVG-SGSEVYRLNLEQGRFLN------ 169 (703)
T ss_pred eee------------------------------eecCcCCccccccCCCccEEEee-cCcceEEEEcccccccc------
Confidence 000 00112345666766555566655 46778888988887654
Q ss_pred ccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee-------eceeceeEEEEEECCCCCEEE
Q 010390 264 AESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS-------GCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~~~~~l~ 336 (512)
.+......++++..++...+|++|+.+|.|..||.+........... +......++++.|+.+|-.++
T Consensus 170 -----P~~~~~~~lN~v~in~~hgLla~Gt~~g~VEfwDpR~ksrv~~l~~~~~v~s~pg~~~~~svTal~F~d~gL~~a 244 (703)
T KOG2321|consen 170 -----PFETDSGELNVVSINEEHGLLACGTEDGVVEFWDPRDKSRVGTLDAASSVNSHPGGDAAPSVTALKFRDDGLHVA 244 (703)
T ss_pred -----ccccccccceeeeecCccceEEecccCceEEEecchhhhhheeeecccccCCCccccccCcceEEEecCCceeEE
Confidence 24444578999999999999999999999999998764432222221 122233488899999999999
Q ss_pred EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccccccCc
Q 010390 337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRSPS 405 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 405 (512)
+|+.+|.|.|||++..+.....-.+..-+|..+.|.+.+.+--+...+...++|||-.+|+.....++.
T Consensus 245 VGts~G~v~iyDLRa~~pl~~kdh~~e~pi~~l~~~~~~~q~~v~S~Dk~~~kiWd~~~Gk~~asiEpt 313 (703)
T KOG2321|consen 245 VGTSTGSVLIYDLRASKPLLVKDHGYELPIKKLDWQDTDQQNKVVSMDKRILKIWDECTGKPMASIEPT 313 (703)
T ss_pred eeccCCcEEEEEcccCCceeecccCCccceeeecccccCCCceEEecchHHhhhcccccCCceeecccc
Confidence 999999999999999877544444446689999998764233333344578999999999977665553
No 231
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.58 E-value=2.8e-12 Score=116.69 Aligned_cols=296 Identities=15% Similarity=0.203 Sum_probs=181.4
Q ss_pred ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE-----eCC-----C
Q 010390 61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA-----SGD-----Q 130 (512)
Q Consensus 61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~-----~~d-----g 130 (512)
+|++|+++|.+. +..++|++...... +.+.. ...++++.|+|.+.+|.+= ..+ -
T Consensus 42 ~S~~G~lfA~~~-~~~v~i~~~~~~~~-------------~lt~~--~~~~~~L~fSP~g~yL~T~e~~~i~~~~~~~~p 105 (566)
T KOG2315|consen 42 YSNNGRLFAYSD-NQVVKVFEIATLKV-------------VLCVE--LKKTYDLLFSPKGNYLLTWEPWAIYGPKNASNP 105 (566)
T ss_pred EcCCCcEEEEEc-CCeEEEEEccCCcE-------------EEEec--cceeeeeeecccccccccccccccccCCCCCCC
Confidence 399999999876 56899999876531 11111 1278999999999998862 112 3
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc-----
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH----- 205 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~----- 205 (512)
.+++|+++++.....++.....-++..|+.+. . +++--..+.+.+|++.+.+..........+....+.++..
T Consensus 106 n~~v~~vet~~~~s~~q~k~Q~~W~~qfs~dE-s-l~arlv~nev~f~~~~~f~~~~~kl~~~~i~~f~lSpgp~~~~vA 183 (566)
T KOG2315|consen 106 NVLVYNVETGVQRSQIQKKMQNGWVPQFSIDE-S-LAARLVSNEVQFYDLGSFKTIQHKLSVSGITMLSLSPGPEPPFVA 183 (566)
T ss_pred ceeeeeeccceehhheehhhhcCcccccccch-h-hhhhhhcceEEEEecCCccceeeeeeccceeeEEecCCCCCceEE
Confidence 47799999976666565444444788999876 3 3333344689999987644332211111111111111100
Q ss_pred -------cccccccceec------------ccccccEEEEEEeecCCEEEEEe--ecC---------CeEEEEeccCccc
Q 010390 206 -------LLSQSKRVSRR------------KAASMSITSVLYLKDEVSIATAS--AVN---------SIVKFWDTRNLKA 255 (512)
Q Consensus 206 -------~~~~~~~~~~~------------~~~~~~v~~~~~~~~~~~l~~~g--~~d---------g~i~iwd~~~~~~ 255 (512)
-.+..-++... .-....-..+.|++-+..|++.. .-| ..+++.++.....
T Consensus 184 vyvPe~kGaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~ 263 (566)
T KOG2315|consen 184 VYVPEKKGAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESV 263 (566)
T ss_pred EEccCCCCCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceE
Confidence 00000000000 00112233566777666544322 222 3577777773333
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEE--EecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTA--SCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~--~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
. ......++|.++.|+++++-+++ |-+--.+.|||++. .++..+.... -.++-|+|.|+
T Consensus 264 ~------------V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~---~~v~df~egp----RN~~~fnp~g~ 324 (566)
T KOG2315|consen 264 S------------VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRG---KPVFDFPEGP----RNTAFFNPHGN 324 (566)
T ss_pred E------------EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCC---CEeEeCCCCC----ccceEECCCCC
Confidence 2 23344678999999999976554 44678999999853 4555554332 34588999999
Q ss_pred EEEEecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC------CCcEEEEeCCCCc
Q 010390 334 HILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD------DYTVRLWSLENSR 397 (512)
Q Consensus 334 ~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~ 397 (512)
+|+.++-+ |.|.|||+.+.++ +..+..- .-+-+.|+||| .+++|+.. |+.++||+.....
T Consensus 325 ii~lAGFGNL~G~mEvwDv~n~K~-i~~~~a~--~tt~~eW~PdG-e~flTATTaPRlrvdNg~KiwhytG~~ 393 (566)
T KOG2315|consen 325 IILLAGFGNLPGDMEVWDVPNRKL-IAKFKAA--NTTVFEWSPDG-EYFLTATTAPRLRVDNGIKIWHYTGSL 393 (566)
T ss_pred EEEEeecCCCCCceEEEeccchhh-ccccccC--CceEEEEcCCC-cEEEEEeccccEEecCCeEEEEecCce
Confidence 99877654 7899999998554 4444433 34567899999 78887763 7889999986543
No 232
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.57 E-value=1.5e-12 Score=108.88 Aligned_cols=273 Identities=15% Similarity=0.187 Sum_probs=185.0
Q ss_pred CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec---CCC-EEEEEeCCCcEEEEeCCCCeeeecccC
Q 010390 73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK---EDT-NILTASGDQTIKIWDAEKKKCTGALMG 148 (512)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~---~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~ 148 (512)
..|.+.+|++...+..- ...........+..+.|.. ++. .|+-+..+|.|.++..........+++
T Consensus 44 R~Gkl~Lys~~d~~~~~----------l~~~q~~dts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss~~L~~ 113 (339)
T KOG0280|consen 44 RSGKLHLYSLEDMKLSP----------LDTLQCTDTSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESSVHLRG 113 (339)
T ss_pred eccceEEEeecccccCc----------cceeeeecccccceeeeeeccCCccceeeeccccceEEEEeeccceeeeeecc
Confidence 45788999987654311 0111112346778888875 555 556777789999998765544444433
Q ss_pred cC------CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 149 HT------GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 149 h~------~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
-. ....++.|++.+ ..++++..+|.+.+-+...... +....++.|+.+
T Consensus 114 ls~~ki~~~~~lslD~~~~~-~~i~vs~s~G~~~~v~~t~~~l-------------------------e~vq~wk~He~E 167 (339)
T KOG0280|consen 114 LSSKKISVVEALSLDISTSG-TKIFVSDSRGSISGVYETEMVL-------------------------EKVQTWKVHEFE 167 (339)
T ss_pred cchhhhhheeeeEEEeeccC-ceEEEEcCCCcEEEEecceeee-------------------------eeccccccccee
Confidence 22 124567888877 6788888889888555443321 223356788899
Q ss_pred EEEEEEeecCCEEEEEeecCCeEEEEeccCcc-ceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCeEEE
Q 010390 223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLK-AQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHRIYL 300 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~i~i 300 (512)
..-..|+.....++.+|++|+.+..||++..+ .+.. ....|..+|.++.-+| .+.++++|+.|..|++
T Consensus 168 ~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i~~----------n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~ 237 (339)
T KOG0280|consen 168 AWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFIWH----------NSKVHTSGVVSIYSSPPKPTYIATGSYDECIRV 237 (339)
T ss_pred eeeeecccCCCceEEecCCCceEEEEEecCCcceeee----------cceeeecceEEEecCCCCCceEEEeccccceee
Confidence 99999999888899899999999999999433 2222 3566778899988875 6789999999999999
Q ss_pred EEcccCCCCceEeeeeceeceeEEEEEECCCC--CEEEEecCCCCEEEEecCCCCCC----CceeccccCCeEEEEeCCC
Q 010390 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNA--SHILSGSSDGNAYVWQVNKPQAD----PIKLKSHDGEVTAVNWCPN 374 (512)
Q Consensus 301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~--~~l~~g~~dg~i~iw~~~~~~~~----~~~~~~h~~~v~~v~~~~~ 374 (512)
||.++..+.. . .....+.+.++..+|.- ..|+++-.+| .+|-+.+..... ......|.+-+..-.|...
T Consensus 238 ~DtRnm~kPl-~---~~~v~GGVWRi~~~p~~~~~lL~~CMh~G-~ki~~~~~~~~e~~~~~~s~~~hdSl~YG~DWd~~ 312 (339)
T KOG0280|consen 238 LDTRNMGKPL-F---KAKVGGGVWRIKHHPEIFHRLLAACMHNG-AKILDSSDKVLEFQIVLPSDKIHDSLCYGGDWDSK 312 (339)
T ss_pred eehhcccCcc-c---cCccccceEEEEecchhhhHHHHHHHhcC-ceEEEecccccchheeeeccccccceeeccccccc
Confidence 9998654322 2 22233568888888863 3455555555 777777655332 3345678888888889665
Q ss_pred CCCeEEEEe-CCCcEE-EEeCCCCc
Q 010390 375 EAGKIVTSS-DDYTVR-LWSLENSR 397 (512)
Q Consensus 375 ~~~~l~s~~-~dg~i~-vwd~~~~~ 397 (512)
. ..|+|++ .|+.++ +|-.-++.
T Consensus 313 ~-~~lATCsFYDk~~~~~Wl~~t~~ 336 (339)
T KOG0280|consen 313 D-SFLATCSFYDKKIRQLWLHITGE 336 (339)
T ss_pred c-ceeeeeeccccceeeeeeeccCC
Confidence 4 6889876 577755 77655543
No 233
>PRK05137 tolB translocation protein TolB; Provisional
Probab=99.56 E-value=1.5e-12 Score=125.53 Aligned_cols=218 Identities=12% Similarity=0.023 Sum_probs=141.3
Q ss_pred CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC---CCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR---DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
..|.+||... .....+..|...+.+.+|+|++ +.|+..+. +..|.+||+.+++..
T Consensus 182 ~~l~~~d~dg-~~~~~lt~~~~~v~~p~wSpDG-~~lay~s~~~g~~~i~~~dl~~g~~~-------------------- 239 (435)
T PRK05137 182 KRLAIMDQDG-ANVRYLTDGSSLVLTPRFSPNR-QEITYMSYANGRPRVYLLDLETGQRE-------------------- 239 (435)
T ss_pred eEEEEECCCC-CCcEEEecCCCCeEeeEECCCC-CEEEEEEecCCCCEEEEEECCCCcEE--------------------
Confidence 4788999754 4445566678899999999998 66665543 468999999765421
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCe--EEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSI--VKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~--i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
.+..+.+.+....|+|+|+.++.+...++. |++||+.++.... +..+........|+|
T Consensus 240 --------~l~~~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------------Lt~~~~~~~~~~~sp 299 (435)
T PRK05137 240 --------LVGNFPGMTFAPRFSPDGRKVVMSLSQGGNTDIYTMDLRSGTTTR------------LTDSPAIDTSPSYSP 299 (435)
T ss_pred --------EeecCCCcccCcEECCCCCEEEEEEecCCCceEEEEECCCCceEE------------ccCCCCccCceeEcC
Confidence 111233456788999999998876655654 7777887765432 222333456789999
Q ss_pred CCCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCce
Q 010390 285 NGVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIK 358 (512)
Q Consensus 285 ~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~ 358 (512)
||+.|+..+. +| .|+++|+..... ..+... ...+....|+|+|++|+....+ ..|.+||+..+.. ..
T Consensus 300 DG~~i~f~s~~~g~~~Iy~~d~~g~~~---~~lt~~--~~~~~~~~~SpdG~~ia~~~~~~~~~~i~~~d~~~~~~--~~ 372 (435)
T PRK05137 300 DGSQIVFESDRSGSPQLYVMNADGSNP---RRISFG--GGRYSTPVWSPRGDLIAFTKQGGGQFSIGVMKPDGSGE--RI 372 (435)
T ss_pred CCCEEEEEECCCCCCeEEEEECCCCCe---EEeecC--CCcccCeEECCCCCEEEEEEcCCCceEEEEEECCCCce--Ee
Confidence 9998887663 33 677888654322 222211 1223457899999999876543 3588888765433 22
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeC-C-----CcEEEEeCCCCcc
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSD-D-----YTVRLWSLENSRC 398 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~-d-----g~i~vwd~~~~~~ 398 (512)
+. ....+....|+||| +.|+..+. . ..+.++|+..+..
T Consensus 373 lt-~~~~~~~p~~spDG-~~i~~~~~~~~~~~~~~L~~~dl~g~~~ 416 (435)
T PRK05137 373 LT-SGFLVEGPTWAPNG-RVIMFFRQTPGSGGAPKLYTVDLTGRNE 416 (435)
T ss_pred cc-CCCCCCCCeECCCC-CEEEEEEccCCCCCcceEEEEECCCCce
Confidence 22 22346788999999 66655443 2 2577888866543
No 234
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.56 E-value=3.3e-13 Score=113.47 Aligned_cols=157 Identities=15% Similarity=0.261 Sum_probs=107.1
Q ss_pred EEEEEEeecCCEEEEEeec---------CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-
Q 010390 223 ITSVLYLKDEVSIATASAV---------NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS- 292 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~~---------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~- 292 (512)
-..+.|+++|..|++.... -+...+|.++........ ......++|.+++|+|+|+.+++.
T Consensus 8 ~~~~~W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~~~~~---------i~l~~~~~I~~~~WsP~g~~favi~ 78 (194)
T PF08662_consen 8 DAKLHWQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNIPVES---------IELKKEGPIHDVAWSPNGNEFAVIY 78 (194)
T ss_pred eEEEEecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCCccce---------eeccCCCceEEEEECcCCCEEEEEE
Confidence 4568899999988775541 134555655433322211 112233569999999999987654
Q ss_pred -ecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceeccccCCeEE
Q 010390 293 -CMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTA 368 (512)
Q Consensus 293 -~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~ 368 (512)
..++.|.+||++ ...+..+.. .....+.|+|+|++|++++.+ |.|.+||+++.+.. ... .| ..++.
T Consensus 79 g~~~~~v~lyd~~---~~~i~~~~~----~~~n~i~wsP~G~~l~~~g~~n~~G~l~~wd~~~~~~i-~~~-~~-~~~t~ 148 (194)
T PF08662_consen 79 GSMPAKVTLYDVK---GKKIFSFGT----QPRNTISWSPDGRFLVLAGFGNLNGDLEFWDVRKKKKI-STF-EH-SDATD 148 (194)
T ss_pred ccCCcccEEEcCc---ccEeEeecC----CCceEEEECCCCCEEEEEEccCCCcEEEEEECCCCEEe-ecc-cc-CcEEE
Confidence 467899999985 344444433 234568999999999988743 66999999965542 222 23 45889
Q ss_pred EEeCCCCCCeEEEEeC------CCcEEEEeCCCCcccc
Q 010390 369 VNWCPNEAGKIVTSSD------DYTVRLWSLENSRCSS 400 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~~~~ 400 (512)
++|+|+| ++|+++.. |+.++||++.. +++.
T Consensus 149 ~~WsPdG-r~~~ta~t~~r~~~dng~~Iw~~~G-~~l~ 184 (194)
T PF08662_consen 149 VEWSPDG-RYLATATTSPRLRVDNGFKIWSFQG-RLLY 184 (194)
T ss_pred EEEcCCC-CEEEEEEeccceeccccEEEEEecC-eEeE
Confidence 9999999 78887763 88999999964 4443
No 235
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.56 E-value=1e-12 Score=112.23 Aligned_cols=255 Identities=12% Similarity=0.146 Sum_probs=169.3
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
...++....||.+.|++... -|-..-+.+.+.|.+++||--.+..+-- ......-..+++++.+.+
T Consensus 13 kp~ll~~~eG~~d~vn~~~l---~~~e~gv~~~s~drtvrv~lkrds~q~w-----------psI~~~mP~~~~~~~y~~ 78 (404)
T KOG1409|consen 13 KPELLSKIEGSQDDVNAAIL---IPKEEGVISVSEDRTVRVWLKRDSGQYW-----------PSIYHYMPSPCSAMEYVS 78 (404)
T ss_pred chhhhhhhcCchhhhhhhee---ccCCCCeEEccccceeeeEEeccccccC-----------chhhhhCCCCceEeeeec
Confidence 34566778899999998887 4556678899999999999543321100 111122357899999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCC----CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 119 EDTNILTASGDQTIKIWDAEK----KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~----~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+...|+.|-..|++.-+.+.. ...++....|...|..+-|+... ..+++.+.|..+.---.+.+..+.....
T Consensus 79 e~~~L~vg~~ngtvtefs~sedfnkm~~~r~~~~h~~~v~~~if~~~~-e~V~s~~~dk~~~~hc~e~~~~lg~Y~~--- 154 (404)
T KOG1409|consen 79 ESRRLYVGQDNGTVTEFALSEDFNKMTFLKDYLAHQARVSAIVFSLTH-EWVLSTGKDKQFAWHCTESGNRLGGYNF--- 154 (404)
T ss_pred cceEEEEEEecceEEEEEhhhhhhhcchhhhhhhhhcceeeEEecCCc-eeEEEeccccceEEEeeccCCcccceEe---
Confidence 999999999999999886643 34566677899999999998765 7899999997776544444432221100
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
....+++.+.-. .+..|...|.|.+-.+......... .+.+|.
T Consensus 155 -------------------------~~~~t~~~~d~~---~~fvGd~~gqvt~lr~~~~~~~~i~---------~~~~h~ 197 (404)
T KOG1409|consen 155 -------------------------ETPASALQFDAL---YAFVGDHSGQITMLKLEQNGCQLIT---------TFNGHT 197 (404)
T ss_pred -------------------------eccCCCCceeeE---EEEecccccceEEEEEeecCCceEE---------EEcCcc
Confidence 000111111111 2223545555555444332221111 577888
Q ss_pred cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
..+.++.|.+....|.+|..|..+.+||+... ......+.++. ..+..+.+-+.-+.+.+++.||.|.+|+++.
T Consensus 198 ~~~~~l~Wd~~~~~LfSg~~d~~vi~wdigg~-~g~~~el~gh~--~kV~~l~~~~~t~~l~S~~edg~i~~w~mn~ 271 (404)
T KOG1409|consen 198 GEVTCLKWDPGQRLLFSGASDHSVIMWDIGGR-KGTAYELQGHN--DKVQALSYAQHTRQLISCGEDGGIVVWNMNV 271 (404)
T ss_pred cceEEEEEcCCCcEEEeccccCceEEEeccCC-cceeeeeccch--hhhhhhhhhhhheeeeeccCCCeEEEEeccc
Confidence 99999999999999999999999999998543 22333334433 2344455556677889999999999999863
No 236
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.54 E-value=2.6e-11 Score=112.88 Aligned_cols=259 Identities=9% Similarity=0.093 Sum_probs=161.1
Q ss_pred EEEEecCCCcEEEEeeC----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-CCc
Q 010390 57 SFCKTSKNSHIFAVSDE----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG-DQT 131 (512)
Q Consensus 57 ~~~~~s~~~~~latg~~----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~-dg~ 131 (512)
+|..++|++++|.+... +|.|..|++...... ...+............++++|++++|+++.. +|.
T Consensus 40 s~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~~~g~---------L~~~~~~~~~g~~p~~i~~~~~g~~l~vany~~g~ 110 (345)
T PF10282_consen 40 SWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDPDTGT---------LTLLNSVPSGGSSPCHIAVDPDGRFLYVANYGGGS 110 (345)
T ss_dssp CCEEE-TTSSEEEEEETTSSTTTEEEEEEEETTTTE---------EEEEEEEEESSSCEEEEEECTTSSEEEEEETTTTE
T ss_pred ceEEEEeCCCEEEEEEccccCCCCEEEEEECCCcce---------eEEeeeeccCCCCcEEEEEecCCCEEEEEEccCCe
Confidence 34444999999998866 578999988754111 1223333334456667999999999998875 899
Q ss_pred EEEEeCCC-Ceeeec---c----------cCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceee
Q 010390 132 IKIWDAEK-KKCTGA---L----------MGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVF 196 (512)
Q Consensus 132 i~iwd~~~-~~~~~~---~----------~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~ 196 (512)
|.++++.. +..... + +.......++.|+|++ +++++.. ....|.+|++.........
T Consensus 111 v~v~~l~~~g~l~~~~~~~~~~g~g~~~~rq~~~h~H~v~~~pdg-~~v~v~dlG~D~v~~~~~~~~~~~l~~------- 182 (345)
T PF10282_consen 111 VSVFPLDDDGSLGEVVQTVRHEGSGPNPDRQEGPHPHQVVFSPDG-RFVYVPDLGADRVYVYDIDDDTGKLTP------- 182 (345)
T ss_dssp EEEEEECTTSEEEEEEEEEESEEEESSTTTTSSTCEEEEEE-TTS-SEEEEEETTTTEEEEEEE-TTS-TEEE-------
T ss_pred EEEEEccCCcccceeeeecccCCCCCcccccccccceeEEECCCC-CEEEEEecCCCEEEEEEEeCCCceEEE-------
Confidence 99999976 433221 1 1123467899999998 5555543 3458999998765421100
Q ss_pred ecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--CccceecccCCCccccccccccc
Q 010390 197 SSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 197 ~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
..............+.|+|+++.++++...++.|.++++. ++............ ......
T Consensus 183 ---------------~~~~~~~~G~GPRh~~f~pdg~~~Yv~~e~s~~v~v~~~~~~~g~~~~~~~~~~~~---~~~~~~ 244 (345)
T PF10282_consen 183 ---------------VDSIKVPPGSGPRHLAFSPDGKYAYVVNELSNTVSVFDYDPSDGSLTEIQTISTLP---EGFTGE 244 (345)
T ss_dssp ---------------EEEEECSTTSSEEEEEE-TTSSEEEEEETTTTEEEEEEEETTTTEEEEEEEEESCE---TTSCSS
T ss_pred ---------------eeccccccCCCCcEEEEcCCcCEEEEecCCCCcEEEEeecccCCceeEEEEeeecc---cccccc
Confidence 0001113345688999999999999988889999999998 33221111100000 001111
Q ss_pred cCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeecee-ceeEEEEEECCCCCEEEEec-CCCCEEEEecCC
Q 010390 275 HGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGS-SDGNAYVWQVNK 351 (512)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~ 351 (512)
.....++++|||++|+++. ..+.|.+|++..... .+........ ......++++|+|++|+++. .++.|.+|+++.
T Consensus 245 ~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g-~l~~~~~~~~~G~~Pr~~~~s~~g~~l~Va~~~s~~v~vf~~d~ 323 (345)
T PF10282_consen 245 NAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATG-TLTLVQTVPTGGKFPRHFAFSPDGRYLYVANQDSNTVSVFDIDP 323 (345)
T ss_dssp SSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTT-TEEEEEEEEESSSSEEEEEE-TTSSEEEEEETTTTEEEEEEEET
T ss_pred CCceeEEEecCCCEEEEEeccCCEEEEEEEecCCC-ceEEEEEEeCCCCCccEEEEeCCCCEEEEEecCCCeEEEEEEeC
Confidence 2577899999999988877 557899999944222 2222222222 23467799999999998765 567899998753
No 237
>PRK03629 tolB translocation protein TolB; Provisional
Probab=99.54 E-value=1.1e-12 Score=125.48 Aligned_cols=217 Identities=10% Similarity=0.026 Sum_probs=135.0
Q ss_pred ccCCcceEEEEEecCCCcEEEEee---CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSD---EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT 125 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~---~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 125 (512)
+...+.+.+| ||||+.||..+ .+..|.+||+.+++. ..+..+.++ +..+.|+|||+.|+.
T Consensus 197 ~~~~~~~p~w---SPDG~~la~~s~~~g~~~i~i~dl~~G~~-----------~~l~~~~~~---~~~~~~SPDG~~La~ 259 (429)
T PRK03629 197 SPQPLMSPAW---SPDGSKLAYVTFESGRSALVIQTLANGAV-----------RQVASFPRH---NGAPAFSPDGSKLAF 259 (429)
T ss_pred CCCceeeeEE---cCCCCEEEEEEecCCCcEEEEEECCCCCe-----------EEccCCCCC---cCCeEECCCCCEEEE
Confidence 4456777777 99999888753 345799999876642 223333333 456899999999885
Q ss_pred E-eCCC--cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEE--eCCCCCCCCCccccceeeecc
Q 010390 126 A-SGDQ--TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIW--DLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 126 ~-~~dg--~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vw--d~~~~~~~~~~~~~~~~~~~~ 199 (512)
. +.+| .|++||+.+++...... +...+....|+|++ +.|+..+. ++...+| |+.++...
T Consensus 260 ~~~~~g~~~I~~~d~~tg~~~~lt~-~~~~~~~~~wSPDG-~~I~f~s~~~g~~~Iy~~d~~~g~~~------------- 324 (429)
T PRK03629 260 ALSKTGSLNLYVMDLASGQIRQVTD-GRSNNTEPTWFPDS-QNLAYTSDQAGRPQVYKVNINGGAPQ------------- 324 (429)
T ss_pred EEcCCCCcEEEEEECCCCCEEEccC-CCCCcCceEECCCC-CEEEEEeCCCCCceEEEEECCCCCeE-------------
Confidence 4 4444 58999998887654433 44567889999998 65555444 4555555 54433211
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCe
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
.+...........|+|+|+.++.++..++ .|.+||+.++..... .. ....
T Consensus 325 ---------------~lt~~~~~~~~~~~SpDG~~Ia~~~~~~g~~~I~~~dl~~g~~~~L------------t~-~~~~ 376 (429)
T PRK03629 325 ---------------RITWEGSQNQDADVSSDGKFMVMVSSNGGQQHIAKQDLATGGVQVL------------TD-TFLD 376 (429)
T ss_pred ---------------EeecCCCCccCEEECCCCCEEEEEEccCCCceEEEEECCCCCeEEe------------CC-CCCC
Confidence 11112224556889999999988764443 588889887653321 11 1123
Q ss_pred eEEEeCCCCCEEEEEecCCe---EEEEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390 278 SSLSQDSNGVFLTASCMDHR---IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICP 330 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~---i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 330 (512)
....|+|||++|+.++.++. +.++++. ......+..+. ..+...+|+|
T Consensus 377 ~~p~~SpDG~~i~~~s~~~~~~~l~~~~~~---G~~~~~l~~~~--~~~~~p~Wsp 427 (429)
T PRK03629 377 ETPSIAPNGTMVIYSSSQGMGSVLNLVSTD---GRFKARLPATD--GQVKFPAWSP 427 (429)
T ss_pred CCceECCCCCEEEEEEcCCCceEEEEEECC---CCCeEECccCC--CCcCCcccCC
Confidence 46789999999999887764 5556653 22333333322 2233456665
No 238
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.53 E-value=3e-12 Score=123.67 Aligned_cols=233 Identities=16% Similarity=0.137 Sum_probs=145.5
Q ss_pred cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCC
Q 010390 76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGS 152 (512)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~ 152 (512)
.|.++|..... .+.+..+...+...+|+|||++|+.+..+ ..|++||+.+++... +..+.+.
T Consensus 171 ~l~~~d~~g~~--------------~~~l~~~~~~~~~p~~Spdg~~la~~~~~~~~~~i~v~d~~~g~~~~-~~~~~~~ 235 (417)
T TIGR02800 171 ELQVADYDGAN--------------PQTITRSREPILSPAWSPDGQKLAYVSFESGKPEIYVQDLATGQREK-VASFPGM 235 (417)
T ss_pred eEEEEcCCCCC--------------CEEeecCCCceecccCCCCCCEEEEEEcCCCCcEEEEEECCCCCEEE-eecCCCC
Confidence 57777765432 33344566789999999999999977654 479999998886543 3335556
Q ss_pred EEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390 153 IKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230 (512)
Q Consensus 153 v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (512)
+.+++|+|++..++++.+.++ .|.+||+.++.... +..+........|+|
T Consensus 236 ~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~----------------------------l~~~~~~~~~~~~s~ 287 (417)
T TIGR02800 236 NGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR----------------------------LTNGPGIDTEPSWSP 287 (417)
T ss_pred ccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE----------------------------CCCCCCCCCCEEECC
Confidence 777899999844555655554 58888887543211 111222344568999
Q ss_pred cCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC---eEEEEEccc
Q 010390 231 DEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH---RIYLYNVLQ 305 (512)
Q Consensus 231 ~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg---~i~i~d~~~ 305 (512)
+++.++.++..++ .|+++|+.+++... ...+........|+|+|++++.++.++ .|.+||+..
T Consensus 288 dg~~l~~~s~~~g~~~iy~~d~~~~~~~~------------l~~~~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~ 355 (417)
T TIGR02800 288 DGKSIAFTSDRGGSPQIYMMDADGGEVRR------------LTFRGGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDG 355 (417)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEE------------eecCCCCccCeEECCCCCEEEEEEccCCceEEEEEeCCC
Confidence 9999887664444 57777877654321 222234466789999999999888775 788999865
Q ss_pred CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCceeccccCCeEEEEe
Q 010390 306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPIKLKSHDGEVTAVNW 371 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~~~~~h~~~v~~v~~ 371 (512)
.. ...+.... ......|+|++++|+..+.++ .+++.+...... ..+..+.+.+..++|
T Consensus 356 ~~---~~~l~~~~---~~~~p~~spdg~~l~~~~~~~~~~~l~~~~~~g~~~--~~~~~~~g~~~~~~w 416 (417)
T TIGR02800 356 GG---ERVLTDTG---LDESPSFAPNGRMILYATTRGGRGVLGLVSTDGRFR--ARLPLGNGDVREPAW 416 (417)
T ss_pred CC---eEEccCCC---CCCCceECCCCCEEEEEEeCCCcEEEEEEECCCcee--eECCCCCCCcCCCCC
Confidence 32 22222111 122358999999887776654 355555433221 233333444555444
No 239
>PF10282 Lactonase: Lactonase, 7-bladed beta-propeller; InterPro: IPR019405 6-phosphogluconolactonases (6PGL) 3.1.1.31 from EC, which hydrolyses 6-phosphogluconolactone to 6-phosphogluconate is opne of the enzymes in the pentose phosphate pathway. Two families of structurally dissimilar 6PGLs are known to exist: the Escherichia coli (strain K12) YbhE IPR022528 from INTERPRO [] and the Pseudomonas aeruginosa DevB IPR005900 from INTERPRO [] types. This entry contains bacterial 6-phosphogluconolactonases (6PGL) YbhE-type 3.1.1.31 from EC which hydrolyse 6-phosphogluconolactone to 6-phosphogluconate. The entry also contains the fungal muconate lactonizing enzyme carboxy-cis,cis-muconate cyclase 5.5.1.5 from EC and muconate cycloisomerase 5.5.1.1 from EC, which convert cis,cis-muconates to muconolactones and vice versa as part of the microbial beta-ketoadipate pathway. Structures have been reported for the E. coli 6-phosphogluconolactonase and Neurospora crassa muconate cycloisomerase. Structures of proteins in this family have revealed a 7-bladed beta-propeller fold [].; PDB: 3SCY_A 1L0Q_A 3HFQ_B 3FGB_A 1RI6_A 3U4Y_A 3BWS_A 1JOF_H.
Probab=99.53 E-value=2.3e-11 Score=113.22 Aligned_cols=303 Identities=12% Similarity=0.141 Sum_probs=179.2
Q ss_pred EEEeeCC----CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----CCcEEEEeCCC
Q 010390 68 FAVSDED----GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----DQTIKIWDAEK 139 (512)
Q Consensus 68 latg~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----dg~i~iwd~~~ 139 (512)
+++|+.. +.|.+|+++.....+ ..+.. ..-......++++|++++|.+... ++.|..|++..
T Consensus 2 ~~vgsy~~~~~~gI~~~~~d~~~g~l---------~~~~~-~~~~~~Ps~l~~~~~~~~LY~~~e~~~~~g~v~~~~i~~ 71 (345)
T PF10282_consen 2 LYVGSYTNGKGGGIYVFRFDEETGTL---------TLVQT-VAEGENPSWLAVSPDGRRLYVVNEGSGDSGGVSSYRIDP 71 (345)
T ss_dssp EEEEECCSSSSTEEEEEEEETTTTEE---------EEEEE-EEESSSECCEEE-TTSSEEEEEETTSSTTTEEEEEEEET
T ss_pred EEEEcCCCCCCCcEEEEEEcCCCCCc---------eEeee-ecCCCCCceEEEEeCCCEEEEEEccccCCCCEEEEEECC
Confidence 4455544 689999884432211 11222 123456677899999999998876 46899888765
Q ss_pred C--e--eeecccCcCCCEEEEEeeCCCCCeEEEEe-CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccce
Q 010390 140 K--K--CTGALMGHTGSIKSLCSHPTNSDILVSGS-RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVS 214 (512)
Q Consensus 140 ~--~--~~~~~~~h~~~v~~l~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 214 (512)
. + .+............++++|++ .+|+++. .+|.|.++++.....+..... .... ......
T Consensus 72 ~~g~L~~~~~~~~~g~~p~~i~~~~~g-~~l~vany~~g~v~v~~l~~~g~l~~~~~-~~~~------------~g~g~~ 137 (345)
T PF10282_consen 72 DTGTLTLLNSVPSGGSSPCHIAVDPDG-RFLYVANYGGGSVSVFPLDDDGSLGEVVQ-TVRH------------EGSGPN 137 (345)
T ss_dssp TTTEEEEEEEEEESSSCEEEEEECTTS-SEEEEEETTTTEEEEEEECTTSEEEEEEE-EEES------------EEEESS
T ss_pred CcceeEEeeeeccCCCCcEEEEEecCC-CEEEEEEccCCeEEEEEccCCcccceeee-eccc------------CCCCCc
Confidence 3 3 333333234456679999998 5555554 589999999986422111100 0000 000000
Q ss_pred ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-
Q 010390 215 RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC- 293 (512)
Q Consensus 215 ~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~- 293 (512)
..........++.++|++++++++......|.+|++........... ........+...++|+|+++++++..
T Consensus 138 ~~rq~~~h~H~v~~~pdg~~v~v~dlG~D~v~~~~~~~~~~~l~~~~------~~~~~~G~GPRh~~f~pdg~~~Yv~~e 211 (345)
T PF10282_consen 138 PDRQEGPHPHQVVFSPDGRFVYVPDLGADRVYVYDIDDDTGKLTPVD------SIKVPPGSGPRHLAFSPDGKYAYVVNE 211 (345)
T ss_dssp TTTTSSTCEEEEEE-TTSSEEEEEETTTTEEEEEEE-TTS-TEEEEE------EEECSTTSSEEEEEE-TTSSEEEEEET
T ss_pred ccccccccceeEEECCCCCEEEEEecCCCEEEEEEEeCCCceEEEee------ccccccCCCCcEEEEcCCcCEEEEecC
Confidence 01122346788999999999998766667899999987652111100 01223345688999999999887665
Q ss_pred cCCeEEEEEcccCCC--CceEeeeec----eeceeEEEEEECCCCCEEEEec-CCCCEEEEecCCC--CCCC-ceecccc
Q 010390 294 MDHRIYLYNVLQLDK--GPIQHFSGC----RIESFYVKSEICPNASHILSGS-SDGNAYVWQVNKP--QADP-IKLKSHD 363 (512)
Q Consensus 294 ~dg~i~i~d~~~~~~--~~~~~~~~~----~~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~--~~~~-~~~~~h~ 363 (512)
.++.|.++++..... ......... ........++++|||++|+++. .++.|.+|+++.. .... .......
T Consensus 212 ~s~~v~v~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~i~ispdg~~lyvsnr~~~sI~vf~~d~~~g~l~~~~~~~~~G 291 (345)
T PF10282_consen 212 LSNTVSVFDYDPSDGSLTEIQTISTLPEGFTGENAPAEIAISPDGRFLYVSNRGSNSISVFDLDPATGTLTLVQTVPTGG 291 (345)
T ss_dssp TTTEEEEEEEETTTTEEEEEEEEESCETTSCSSSSEEEEEE-TTSSEEEEEECTTTEEEEEEECTTTTTEEEEEEEEESS
T ss_pred CCCcEEEEeecccCCceeEEEEeeeccccccccCCceeEEEecCCCEEEEEeccCCEEEEEEEecCCCceEEEEEEeCCC
Confidence 578899999873222 122222211 1112466789999999986654 4678999999533 2211 1222223
Q ss_pred CCeEEEEeCCCCCCeEEEEe-CCCcEEEEeC--CCCccccc
Q 010390 364 GEVTAVNWCPNEAGKIVTSS-DDYTVRLWSL--ENSRCSSM 401 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~--~~~~~~~~ 401 (512)
...+.++++|++ ++|+++. .++.|.+|++ ++|.+...
T Consensus 292 ~~Pr~~~~s~~g-~~l~Va~~~s~~v~vf~~d~~tG~l~~~ 331 (345)
T PF10282_consen 292 KFPRHFAFSPDG-RYLYVANQDSNTVSVFDIDPDTGKLTPV 331 (345)
T ss_dssp SSEEEEEE-TTS-SEEEEEETTTTEEEEEEEETTTTEEEEE
T ss_pred CCccEEEEeCCC-CEEEEEecCCCeEEEEEEeCCCCcEEEe
Confidence 458999999999 6666555 6789999876 46665443
No 240
>KOG3881 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.52 E-value=2.3e-12 Score=112.03 Aligned_cols=281 Identities=14% Similarity=0.125 Sum_probs=185.4
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
....|.++.|. ..++...|.....+-.+..+.+........ .............|..+... ...|++|-.
T Consensus 54 ~~~ris~l~~~-~d~~tevl~~r~~~~~~~~~~~~E~~~~s~-------~~~~~~~~l~~~~I~gl~~~--dg~Litc~~ 123 (412)
T KOG3881|consen 54 ELDRISSLLFG-VDGETEVLNARSADDDLPKFVIEEFEISSS-------LDDAKTVSLGTKSIKGLKLA--DGTLITCVS 123 (412)
T ss_pred hhhhhhhheee-cCCceeEeeccccCcccccccccCCccccc-------cccccccccccccccchhhc--CCEEEEEec
Confidence 45567777774 133334555554666677776654432110 01122334456677777764 447888899
Q ss_pred CCcEEEEeCCCCe----eeecccCcCCCEEEEEeeCCCCCeEEEEeCC--CcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 129 DQTIKIWDAEKKK----CTGALMGHTGSIKSLCSHPTNSDILVSGSRD--GSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 129 dg~i~iwd~~~~~----~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d--g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
+|.+.+|....+. .+..+..+ ..+..+.-++..+.++++|+.. ..+.+||+++.+.+.. ....+
T Consensus 124 sG~l~~~~~k~~d~hss~l~~la~g-~g~~~~r~~~~~p~Iva~GGke~~n~lkiwdle~~~qiw~---------aKNvp 193 (412)
T KOG3881|consen 124 SGNLQVRHDKSGDLHSSKLIKLATG-PGLYDVRQTDTDPYIVATGGKENINELKIWDLEQSKQIWS---------AKNVP 193 (412)
T ss_pred CCcEEEEeccCCccccccceeeecC-CceeeeccCCCCCceEecCchhcccceeeeecccceeeee---------ccCCC
Confidence 9999999987442 23334433 4677777788777888889998 8999999987643221 11111
Q ss_pred ccccccccccceecccccccEEEEEEeec--CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEE
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKD--EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSL 280 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~--~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~ 280 (512)
...+. . .-.-.++++.|.+. ...+++ ++.-+.|++||++.++.+.. .+.....+++++
T Consensus 194 nD~L~---L------rVPvW~tdi~Fl~g~~~~~fat-~T~~hqvR~YDt~~qRRPV~----------~fd~~E~~is~~ 253 (412)
T KOG3881|consen 194 NDRLG---L------RVPVWITDIRFLEGSPNYKFAT-ITRYHQVRLYDTRHQRRPVA----------QFDFLENPISST 253 (412)
T ss_pred Ccccc---c------eeeeeeccceecCCCCCceEEE-EecceeEEEecCcccCccee----------EeccccCcceee
Confidence 11100 0 11235678888876 556665 55789999999998776554 344556789999
Q ss_pred EeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec
Q 010390 281 SQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK 360 (512)
Q Consensus 281 ~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~ 360 (512)
...|+++++++|..-|.+..||++.... ....+.+ ..+.+..+..+|.++++++++-|..+||+|+.+.+.....+.
T Consensus 254 ~l~p~gn~Iy~gn~~g~l~~FD~r~~kl-~g~~~kg--~tGsirsih~hp~~~~las~GLDRyvRIhD~ktrkll~kvYv 330 (412)
T KOG3881|consen 254 GLTPSGNFIYTGNTKGQLAKFDLRGGKL-LGCGLKG--ITGSIRSIHCHPTHPVLASCGLDRYVRIHDIKTRKLLHKVYV 330 (412)
T ss_pred eecCCCcEEEEecccchhheecccCcee-eccccCC--ccCCcceEEEcCCCceEEeeccceeEEEeecccchhhhhhhh
Confidence 9999999999999999999999976422 1111222 234577788999999999999999999999998655333322
Q ss_pred cccCCeEEEEeCCC
Q 010390 361 SHDGEVTAVNWCPN 374 (512)
Q Consensus 361 ~h~~~v~~v~~~~~ 374 (512)
...++++.+.++
T Consensus 331 --Ks~lt~il~~~~ 342 (412)
T KOG3881|consen 331 --KSRLTFILLRDD 342 (412)
T ss_pred --hccccEEEecCC
Confidence 345666666554
No 241
>PRK04922 tolB translocation protein TolB; Provisional
Probab=99.52 E-value=2.8e-12 Score=123.39 Aligned_cols=217 Identities=11% Similarity=0.076 Sum_probs=138.9
Q ss_pred CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
..|.+||.... ....+..+...+.+.+|+|++ +.|+..+.+ ..|.+||+.+++...
T Consensus 184 ~~l~i~D~~g~-~~~~lt~~~~~v~~p~wSpDg-~~la~~s~~~~~~~l~~~dl~~g~~~~------------------- 242 (433)
T PRK04922 184 YALQVADSDGY-NPQTILRSAEPILSPAWSPDG-KKLAYVSFERGRSAIYVQDLATGQREL------------------- 242 (433)
T ss_pred EEEEEECCCCC-CceEeecCCCccccccCCCCC-CEEEEEecCCCCcEEEEEECCCCCEEE-------------------
Confidence 46899998544 444555677789999999998 667666533 469999997654211
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS 284 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~ 284 (512)
+....+...+..|+|+++.++.+.+.+| .|++||+.+++... ...+.......+|+|
T Consensus 243 ---------l~~~~g~~~~~~~SpDG~~l~~~~s~~g~~~Iy~~d~~~g~~~~------------lt~~~~~~~~~~~sp 301 (433)
T PRK04922 243 ---------VASFRGINGAPSFSPDGRRLALTLSRDGNPEIYVMDLGSRQLTR------------LTNHFGIDTEPTWAP 301 (433)
T ss_pred ---------eccCCCCccCceECCCCCEEEEEEeCCCCceEEEEECCCCCeEE------------CccCCCCccceEECC
Confidence 1111223457899999998876655555 59999998765432 222223346789999
Q ss_pred CCCEEEEEe-cCCe--EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCce
Q 010390 285 NGVFLTASC-MDHR--IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPIK 358 (512)
Q Consensus 285 ~~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~~ 358 (512)
||+.|+..+ .+|. |+++|+.... ...+.... ......+|+|+|++|+..+.++ .|.+||+.+++.. .
T Consensus 302 DG~~l~f~sd~~g~~~iy~~dl~~g~---~~~lt~~g--~~~~~~~~SpDG~~Ia~~~~~~~~~~I~v~d~~~g~~~--~ 374 (433)
T PRK04922 302 DGKSIYFTSDRGGRPQIYRVAASGGS---AERLTFQG--NYNARASVSPDGKKIAMVHGSGGQYRIAVMDLSTGSVR--T 374 (433)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCC---eEEeecCC--CCccCEEECCCCCEEEEEECCCCceeEEEEECCCCCeE--E
Confidence 999888766 3444 6666654432 22221111 1233579999999998765432 5999999776542 2
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCC---CcEEEEeCCCCc
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDD---YTVRLWSLENSR 397 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~d---g~i~vwd~~~~~ 397 (512)
+. +........|+||+ ++|+..+.+ +.|.++++..+.
T Consensus 375 Lt-~~~~~~~p~~spdG-~~i~~~s~~~g~~~L~~~~~~g~~ 414 (433)
T PRK04922 375 LT-PGSLDESPSFAPNG-SMVLYATREGGRGVLAAVSTDGRV 414 (433)
T ss_pred CC-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCCc
Confidence 32 22345567999999 666655543 467788886543
No 242
>PF02239 Cytochrom_D1: Cytochrome D1 heme domain; PDB: 1NNO_B 1HZU_A 1N15_B 1N50_A 1GJQ_A 1BL9_B 1NIR_B 1N90_B 1HZV_A 1AOQ_A ....
Probab=99.51 E-value=1.3e-11 Score=114.48 Aligned_cols=253 Identities=13% Similarity=0.124 Sum_probs=152.9
Q ss_pred eEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe-CCCcEE
Q 010390 55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS-GDQTIK 133 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~-~dg~i~ 133 (512)
.+.| +|||+++++++.||.|.++|+.+.+. +.+++.. ....++++++||++++++. .++.+.
T Consensus 41 ~~~~---s~Dgr~~yv~~rdg~vsviD~~~~~~-------------v~~i~~G-~~~~~i~~s~DG~~~~v~n~~~~~v~ 103 (369)
T PF02239_consen 41 GLKF---SPDGRYLYVANRDGTVSVIDLATGKV-------------VATIKVG-GNPRGIAVSPDGKYVYVANYEPGTVS 103 (369)
T ss_dssp EEE----TT-SSEEEEEETTSEEEEEETTSSSE-------------EEEEE-S-SEEEEEEE--TTTEEEEEEEETTEEE
T ss_pred EEEe---cCCCCEEEEEcCCCeEEEEECCcccE-------------EEEEecC-CCcceEEEcCCCCEEEEEecCCCcee
Confidence 3455 99999999999999999999987743 5555443 4568899999999998665 589999
Q ss_pred EEeCCCCeeeecccCc-------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 134 IWDAEKKKCTGALMGH-------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 134 iwd~~~~~~~~~~~~h-------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
|+|.++.+.+..+... ...+.+|..+|....++++.-.-+.|.+-|.........
T Consensus 104 v~D~~tle~v~~I~~~~~~~~~~~~Rv~aIv~s~~~~~fVv~lkd~~~I~vVdy~d~~~~~~------------------ 165 (369)
T PF02239_consen 104 VIDAETLEPVKTIPTGGMPVDGPESRVAAIVASPGRPEFVVNLKDTGEIWVVDYSDPKNLKV------------------ 165 (369)
T ss_dssp EEETTT--EEEEEE--EE-TTTS---EEEEEE-SSSSEEEEEETTTTEEEEEETTTSSCEEE------------------
T ss_pred EeccccccceeecccccccccccCCCceeEEecCCCCEEEEEEccCCeEEEEEeccccccce------------------
Confidence 9999999988877532 346778888887733444444457888888765422110
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC---CC---------ccc--------
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW---PH---------AES-------- 266 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~---~~---------~~~-------- 266 (512)
.............|.|++++++++...+..|-++|..+.+....... ++ ...
T Consensus 166 --------~~i~~g~~~~D~~~dpdgry~~va~~~sn~i~viD~~~~k~v~~i~~g~~p~~~~~~~~php~~g~vw~~~~ 237 (369)
T PF02239_consen 166 --------TTIKVGRFPHDGGFDPDGRYFLVAANGSNKIAVIDTKTGKLVALIDTGKKPHPGPGANFPHPGFGPVWATSG 237 (369)
T ss_dssp --------EEEE--TTEEEEEE-TTSSEEEEEEGGGTEEEEEETTTTEEEEEEE-SSSBEETTEEEEEETTTEEEEEEEB
T ss_pred --------eeecccccccccccCcccceeeecccccceeEEEeeccceEEEEeeccccccccccccccCCCcceEEeecc
Confidence 11122345667899999999888766677888999887655432211 11 000
Q ss_pred ------------------------cccccccccCeeEEEeCCCCCEEEEE----ecCCeEEEEEcccCCCCceEeeeece
Q 010390 267 ------------------------SSAKETRLHGISSLSQDSNGVFLTAS----CMDHRIYLYNVLQLDKGPIQHFSGCR 318 (512)
Q Consensus 267 ------------------------~~~~~~~~~~i~~~~~~~~~~~l~~~----~~dg~i~i~d~~~~~~~~~~~~~~~~ 318 (512)
.........+ ..+..+|+++++++. ...+.|.++|..+. .....+....
T Consensus 238 ~~~~~~~~ig~~~v~v~d~~~wkvv~~I~~~G~g-lFi~thP~s~~vwvd~~~~~~~~~v~viD~~tl--~~~~~i~~~~ 314 (369)
T PF02239_consen 238 LGYFAIPLIGTDPVSVHDDYAWKVVKTIPTQGGG-LFIKTHPDSRYVWVDTFLNPDADTVQVIDKKTL--KVVKTITPGP 314 (369)
T ss_dssp SSSSEEEEEE--TTT-STTTBTSEEEEEE-SSSS---EE--TT-SEEEEE-TT-SSHT-EEEEECCGT--EEEE-HHHHH
T ss_pred ccceecccccCCccccchhhcCeEEEEEECCCCc-ceeecCCCCccEEeeccCCCCCceEEEEECcCc--ceeEEEeccC
Confidence 0001111122 557779999999998 34589999998764 2222222111
Q ss_pred eceeEEEEEECCCCCEEEEecCC--CCEEEEecCCCCC
Q 010390 319 IESFYVKSEICPNASHILSGSSD--GNAYVWQVNKPQA 354 (512)
Q Consensus 319 ~~~~~~~~~~s~~~~~l~~g~~d--g~i~iw~~~~~~~ 354 (512)
...+..+.|+++|+++.....+ +.|.+||..+.+.
T Consensus 315 -~~~~~h~ef~~dG~~v~vS~~~~~~~i~v~D~~Tl~~ 351 (369)
T PF02239_consen 315 -GKRVVHMEFNPDGKEVWVSVWDGNGAIVVYDAKTLKE 351 (369)
T ss_dssp -T--EEEEEE-TTSSEEEEEEE--TTEEEEEETTTTEE
T ss_pred -CCcEeccEECCCCCEEEEEEecCCCEEEEEECCCcEE
Confidence 1126779999999987655443 3699999988765
No 243
>PRK02889 tolB translocation protein TolB; Provisional
Probab=99.50 E-value=2.8e-12 Score=122.98 Aligned_cols=200 Identities=15% Similarity=0.101 Sum_probs=125.6
Q ss_pred CCccCCcceEEEEEecCCCcEEEEeeCC---CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 47 HGEETPPLAVSFCKTSKNSHIFAVSDED---GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 47 ~gh~~~v~~v~~~~~s~~~~~latg~~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
..+...+.+.+| ||||+.||..+.+ ..|.+||+.++.. ..+....+.+....|+|||+.|
T Consensus 192 ~~~~~~v~~p~w---SPDG~~la~~s~~~~~~~I~~~dl~~g~~--------------~~l~~~~g~~~~~~~SPDG~~l 254 (427)
T PRK02889 192 LSSPEPIISPAW---SPDGTKLAYVSFESKKPVVYVHDLATGRR--------------RVVANFKGSNSAPAWSPDGRTL 254 (427)
T ss_pred ccCCCCcccceE---cCCCCEEEEEEccCCCcEEEEEECCCCCE--------------EEeecCCCCccceEECCCCCEE
Confidence 456677788888 9999999887543 3599999987642 1122233456789999999988
Q ss_pred E-EEeCCCcEEEEe--CCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 124 L-TASGDQTIKIWD--AEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 124 ~-s~~~dg~i~iwd--~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
+ +.+.+|...||. +.++. ...+..+........|+|++..++++...+|...+|.+.......
T Consensus 255 a~~~~~~g~~~Iy~~d~~~~~-~~~lt~~~~~~~~~~wSpDG~~l~f~s~~~g~~~Iy~~~~~~g~~------------- 320 (427)
T PRK02889 255 AVALSRDGNSQIYTVNADGSG-LRRLTQSSGIDTEPFFSPDGRSIYFTSDRGGAPQIYRMPASGGAA------------- 320 (427)
T ss_pred EEEEccCCCceEEEEECCCCC-cEECCCCCCCCcCeEEcCCCCEEEEEecCCCCcEEEEEECCCCce-------------
Confidence 7 566777766665 44444 444555555567788999984344444445677777654211100
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCee
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
..............|+|+|+.++.++..++ .|.+||+.+++..... . .....
T Consensus 321 -------------~~lt~~g~~~~~~~~SpDG~~Ia~~s~~~g~~~I~v~d~~~g~~~~lt------------~-~~~~~ 374 (427)
T PRK02889 321 -------------QRVTFTGSYNTSPRISPDGKLLAYISRVGGAFKLYVQDLATGQVTALT------------D-TTRDE 374 (427)
T ss_pred -------------EEEecCCCCcCceEECCCCCEEEEEEccCCcEEEEEEECCCCCeEEcc------------C-CCCcc
Confidence 000011122345789999999987664333 6999999876543211 1 11235
Q ss_pred EEEeCCCCCEEEEEecCC---eEEEEEc
Q 010390 279 SLSQDSNGVFLTASCMDH---RIYLYNV 303 (512)
Q Consensus 279 ~~~~~~~~~~l~~~~~dg---~i~i~d~ 303 (512)
...|+|||+.|+.++.++ .+.+.++
T Consensus 375 ~p~~spdg~~l~~~~~~~g~~~l~~~~~ 402 (427)
T PRK02889 375 SPSFAPNGRYILYATQQGGRSVLAAVSS 402 (427)
T ss_pred CceECCCCCEEEEEEecCCCEEEEEEEC
Confidence 679999999988877543 2444444
No 244
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.49 E-value=9.3e-12 Score=116.44 Aligned_cols=283 Identities=11% Similarity=0.111 Sum_probs=186.5
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccc--ccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHR--ENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~--~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
..|++| +.+..|+|+|+.||.+++-.+.+......... .......-+++.||++.|.-+.|+.+.+.|-+...+|
T Consensus 17 L~c~~W---Nke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~QKLTtSDt~G 93 (1189)
T KOG2041|consen 17 LHCAEW---NKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENNQKLTTSDTSG 93 (1189)
T ss_pred EEEEEE---cccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEeccccccccccCCCc
Confidence 345555 99999999999999999998876544322211 1122234567899999999999999999999999999
Q ss_pred cEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 131 TIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
.|.||-+-.|.-...+. ..++.|.+++|..+| ..++..-.||.|.+=.++....-...
T Consensus 94 lIiVWmlykgsW~EEMiNnRnKSvV~SmsWn~dG-~kIcIvYeDGavIVGsvdGNRIwgKe------------------- 153 (1189)
T KOG2041|consen 94 LIIVWMLYKGSWCEEMINNRNKSVVVSMSWNLDG-TKICIVYEDGAVIVGSVDGNRIWGKE------------------- 153 (1189)
T ss_pred eEEEEeeecccHHHHHhhCcCccEEEEEEEcCCC-cEEEEEEccCCEEEEeeccceecchh-------------------
Confidence 99999998886554442 245678999999998 88999999999988776643321100
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe------
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ------ 282 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~------ 282 (512)
-.......+.|++|.+.++. +-.+|.+.+||....-.......-..............|-.+.|
T Consensus 154 ---------Lkg~~l~hv~ws~D~~~~Lf-~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~i~w~~g~~~ 223 (1189)
T KOG2041|consen 154 ---------LKGQLLAHVLWSEDLEQALF-KKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAEIEWNTGPYQ 223 (1189)
T ss_pred ---------cchheccceeecccHHHHHh-hhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccceeeccCccc
Confidence 00113457889999888776 44689999999764311100000000000011111222444444
Q ss_pred --CCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---------CEEEEecCC
Q 010390 283 --DSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---------NAYVWQVNK 351 (512)
Q Consensus 283 --~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---------~i~iw~~~~ 351 (512)
-|+...|+++..+|.+.+..-.+. ..++..-.+ ..++...|+++|..|+.++.+. .|++|..-.
T Consensus 224 ~v~pdrP~lavcy~nGr~QiMR~eND-~~Pvv~dtg----m~~vgakWnh~G~vLAvcG~~~da~~~~d~n~v~Fysp~G 298 (1189)
T KOG2041|consen 224 PVPPDRPRLAVCYANGRMQIMRSEND-PEPVVVDTG----MKIVGAKWNHNGAVLAVCGNDSDADEPTDSNKVHFYSPYG 298 (1189)
T ss_pred cCCCCCCEEEEEEcCceehhhhhcCC-CCCeEEecc----cEeecceecCCCcEEEEccCcccccCccccceEEEeccch
Confidence 357789999999999988765432 233333333 3466789999999999887642 455654322
Q ss_pred CCCCCceeccccCCeEEEEeCCCC
Q 010390 352 PQADPIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 352 ~~~~~~~~~~h~~~v~~v~~~~~~ 375 (512)
+ ...++.-....|++++|-..|
T Consensus 299 -~-i~gtlkvpg~~It~lsWEg~g 320 (1189)
T KOG2041|consen 299 -H-IVGTLKVPGSCITGLSWEGTG 320 (1189)
T ss_pred -h-heEEEecCCceeeeeEEcCCc
Confidence 2 235566667789999886655
No 245
>PF08662 eIF2A: Eukaryotic translation initiation factor eIF2A; InterPro: IPR013979 This entry contains beta propellor domains found in eukaryotic translation initiation factors and TolB domain-containing proteins.
Probab=99.48 E-value=4.8e-12 Score=106.48 Aligned_cols=147 Identities=19% Similarity=0.267 Sum_probs=103.4
Q ss_pred ecCCCcEEEEeeC----------CCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCCCEEEE--Ee
Q 010390 61 TSKNSHIFAVSDE----------DGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKEDTNILT--AS 127 (512)
Q Consensus 61 ~s~~~~~latg~~----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s--~~ 127 (512)
|+|+|++|++-.. -|...||.++.... ....+. ...++|.+++|+|+|+.|+. |.
T Consensus 13 W~~~G~~l~~~~~~~~~~~~ks~~~~~~l~~~~~~~~------------~~~~i~l~~~~~I~~~~WsP~g~~favi~g~ 80 (194)
T PF08662_consen 13 WQPSGDYLLVKVQTRVDKSGKSYYGEFELFYLNEKNI------------PVESIELKKEGPIHDVAWSPNGNEFAVIYGS 80 (194)
T ss_pred ecccCCEEEEEEEEeeccCcceEEeeEEEEEEecCCC------------ccceeeccCCCceEEEEECcCCCEEEEEEcc
Confidence 3899987776432 13355665533211 122222 23457999999999998764 44
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
.++.|.+||++ ++.+..+. ...++.+.|+|+| ++|++++.+ |.|.+||+++.+.+...
T Consensus 81 ~~~~v~lyd~~-~~~i~~~~--~~~~n~i~wsP~G-~~l~~~g~~n~~G~l~~wd~~~~~~i~~~--------------- 141 (194)
T PF08662_consen 81 MPAKVTLYDVK-GKKIFSFG--TQPRNTISWSPDG-RFLVLAGFGNLNGDLEFWDVRKKKKISTF--------------- 141 (194)
T ss_pred CCcccEEEcCc-ccEeEeec--CCCceEEEECCCC-CEEEEEEccCCCcEEEEEECCCCEEeecc---------------
Confidence 57899999996 66666664 4678899999998 788887643 67999999855433211
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeec-----CCeEEEEeccC
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-----NSIVKFWDTRN 252 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-----dg~i~iwd~~~ 252 (512)
....+..++|+|+|++++++.+. |..++||+...
T Consensus 142 --------------~~~~~t~~~WsPdGr~~~ta~t~~r~~~dng~~Iw~~~G 180 (194)
T PF08662_consen 142 --------------EHSDATDVEWSPDGRYLATATTSPRLRVDNGFKIWSFQG 180 (194)
T ss_pred --------------ccCcEEEEEEcCCCCEEEEEEeccceeccccEEEEEecC
Confidence 12357899999999999998764 78899999864
No 246
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.47 E-value=2.8e-11 Score=116.98 Aligned_cols=236 Identities=13% Similarity=0.143 Sum_probs=146.7
Q ss_pred cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCCCeeeecccCcCCC
Q 010390 76 YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEKKKCTGALMGHTGS 152 (512)
Q Consensus 76 ~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~~~~~~~~~~h~~~ 152 (512)
.|.++|.+... .+.+..+...+....|+|||+.|+..+.+ ..|.+||+.+++... +....+.
T Consensus 180 ~l~~~d~~g~~--------------~~~l~~~~~~~~~p~wSpDG~~la~~s~~~~~~~l~~~~l~~g~~~~-l~~~~g~ 244 (430)
T PRK00178 180 TLQRSDYDGAR--------------AVTLLQSREPILSPRWSPDGKRIAYVSFEQKRPRIFVQNLDTGRREQ-ITNFEGL 244 (430)
T ss_pred EEEEECCCCCC--------------ceEEecCCCceeeeeECCCCCEEEEEEcCCCCCEEEEEECCCCCEEE-ccCCCCC
Confidence 47777776442 23344567789999999999999876543 369999998886543 2223344
Q ss_pred EEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390 153 IKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230 (512)
Q Consensus 153 v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (512)
+....|+|++..++++...+| .|.+||+.++.... +..+........|+|
T Consensus 245 ~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~----------------------------lt~~~~~~~~~~~sp 296 (430)
T PRK00178 245 NGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR----------------------------VTNHPAIDTEPFWGK 296 (430)
T ss_pred cCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE----------------------------cccCCCCcCCeEECC
Confidence 557899999844445666665 57778887654211 111223345678999
Q ss_pred cCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-C--eEEEEEccc
Q 010390 231 DEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-H--RIYLYNVLQ 305 (512)
Q Consensus 231 ~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~ 305 (512)
+++.++.++..++ .|+++|+.+++..... . .........|+|+|+.++..+.+ + .|.++|+.+
T Consensus 297 Dg~~i~f~s~~~g~~~iy~~d~~~g~~~~lt----------~--~~~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~t 364 (430)
T PRK00178 297 DGRTLYFTSDRGGKPQIYKVNVNGGRAERVT----------F--VGNYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQR 364 (430)
T ss_pred CCCEEEEEECCCCCceEEEEECCCCCEEEee----------c--CCCCccceEECCCCCEEEEEEccCCceEEEEEECCC
Confidence 9999887664444 5777777665532211 0 11123457899999998877643 3 588888865
Q ss_pred CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-C--CEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390 306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-G--NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN 374 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~ 374 (512)
... ..+..... .....|+|+|++++..+.+ + .|+++++..... ..+..+.+.+...+|+|-
T Consensus 365 g~~---~~lt~~~~---~~~p~~spdg~~i~~~~~~~g~~~l~~~~~~g~~~--~~l~~~~g~~~~p~ws~~ 428 (430)
T PRK00178 365 GSV---RILTDTSL---DESPSVAPNGTMLIYATRQQGRGVLMLVSINGRVR--LPLPTAQGEVREPSWSPY 428 (430)
T ss_pred CCE---EEccCCCC---CCCceECCCCCEEEEEEecCCceEEEEEECCCCce--EECcCCCCCcCCCccCCC
Confidence 432 22221111 1135899999999766543 3 466667654322 334445566777888873
No 247
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.46 E-value=1.8e-11 Score=119.48 Aligned_cols=120 Identities=18% Similarity=0.322 Sum_probs=103.6
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL 124 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~ 124 (512)
.+.||++.|+++.+ +-||.++|+.+.|.++++|++++.+.. ....-+|...|..++|+|+ .|+
T Consensus 170 ~l~GHeG~iF~i~~---s~dg~~i~s~SdDRsiRlW~i~s~~~~------------~~~~fgHsaRvw~~~~~~n--~i~ 232 (967)
T KOG0974|consen 170 RLKGHEGSIFSIVT---SLDGRYIASVSDDRSIRLWPIDSREVL------------GCTGFGHSARVWACCFLPN--RII 232 (967)
T ss_pred eecccCCceEEEEE---ccCCcEEEEEecCcceeeeeccccccc------------CcccccccceeEEEEeccc--eeE
Confidence 78899999999999 999999999999999999999987541 2356789999999999988 899
Q ss_pred EEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 125 TASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
|++.|-+.++|+.+ +.....+.+|. ..|+.++..+.. ..++|++.|+.+++||+...
T Consensus 233 t~gedctcrvW~~~-~~~l~~y~~h~g~~iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r 290 (967)
T KOG0974|consen 233 TVGEDCTCRVWGVN-GTQLEVYDEHSGKGIWKIAVPIGV-IIKVTGGNDSTLKLWDLNGR 290 (967)
T ss_pred EeccceEEEEEecc-cceehhhhhhhhcceeEEEEcCCc-eEEEeeccCcchhhhhhhcc
Confidence 99999999999754 44455777776 478999988866 89999999999999998654
No 248
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.45 E-value=2.7e-11 Score=116.51 Aligned_cols=222 Identities=14% Similarity=0.128 Sum_probs=135.6
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeC-C--CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc--EEE
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASG-D--QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS--FAI 177 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~v 177 (512)
.+..+...+.+..|+|||+.|+..+. + ..|.+||+.+++... +....+......|+|++..++++.+.+|. |.+
T Consensus 212 ~l~~~~~~~~~p~wSPDG~~La~~s~~~g~~~L~~~dl~tg~~~~-lt~~~g~~~~~~wSPDG~~La~~~~~~g~~~Iy~ 290 (448)
T PRK04792 212 MLLRSPEPLMSPAWSPDGRKLAYVSFENRKAEIFVQDIYTQVREK-VTSFPGINGAPRFSPDGKKLALVLSKDGQPEIYV 290 (448)
T ss_pred EeecCCCcccCceECCCCCEEEEEEecCCCcEEEEEECCCCCeEE-ecCCCCCcCCeeECCCCCEEEEEEeCCCCeEEEE
Confidence 34456778999999999999986654 3 258899998876432 22222334568999999555556677775 666
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccc
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKA 255 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~ 255 (512)
+|+.+++.. .+..+........|+|+++.++.++..++ .|.++|+.+++.
T Consensus 291 ~dl~tg~~~----------------------------~lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~ 342 (448)
T PRK04792 291 VDIATKALT----------------------------RITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKV 342 (448)
T ss_pred EECCCCCeE----------------------------ECccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE
Confidence 777654321 11122334567789999999988765454 466667766543
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-C--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-H--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
... ..........+|+|||++|+..+.+ + .|.++|+.+... ..+..... .....|+|+|
T Consensus 343 ~~L------------t~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~---~~lt~~~~---d~~ps~spdG 404 (448)
T PRK04792 343 SRL------------TFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAM---QVLTSTRL---DESPSVAPNG 404 (448)
T ss_pred EEE------------ecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCe---EEccCCCC---CCCceECCCC
Confidence 221 1111123456899999988876543 4 455667654322 22221111 1135799999
Q ss_pred CEEEEecC-CCC--EEEEecCCCCCCCceeccccCCeEEEEeCC
Q 010390 333 SHILSGSS-DGN--AYVWQVNKPQADPIKLKSHDGEVTAVNWCP 373 (512)
Q Consensus 333 ~~l~~g~~-dg~--i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~ 373 (512)
+.|+..+. ++. +++++.+... ...+..+.+.+...+|+|
T Consensus 405 ~~I~~~~~~~g~~~l~~~~~~G~~--~~~l~~~~g~~~~p~Wsp 446 (448)
T PRK04792 405 TMVIYSTTYQGKQVLAAVSIDGRF--KARLPAGQGEVKSPAWSP 446 (448)
T ss_pred CEEEEEEecCCceEEEEEECCCCc--eEECcCCCCCcCCCccCC
Confidence 98876554 333 6667764332 234555566778888887
No 249
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.45 E-value=6e-10 Score=96.84 Aligned_cols=280 Identities=13% Similarity=0.136 Sum_probs=176.3
Q ss_pred eEEEEEecCCCcEEEEeeC---CCcEEEEECCC--CCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-
Q 010390 55 AVSFCKTSKNSHIFAVSDE---DGYVSLFDSRR--KLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG- 128 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~~---dg~i~iwd~~~--~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~- 128 (512)
..+|+.++|++++|.++.. +|.|.-|.++. +...+ +.....-..+-+.+++++++++|+++..
T Consensus 41 nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~-----------ln~~~~~g~~p~yvsvd~~g~~vf~AnY~ 109 (346)
T COG2706 41 NPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTF-----------LNRQTLPGSPPCYVSVDEDGRFVFVANYH 109 (346)
T ss_pred CCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEE-----------eeccccCCCCCeEEEECCCCCEEEEEEcc
Confidence 3445555999999998844 57788888775 32211 1111122233388999999999998876
Q ss_pred CCcEEEEeCCC-Ceeeec--ccCcCCC----------EEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccce
Q 010390 129 DQTIKIWDAEK-KKCTGA--LMGHTGS----------IKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 129 dg~i~iwd~~~-~~~~~~--~~~h~~~----------v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
.|.|.++-+++ |.+... +..|.+. +....+.|++ ++|++.+. -..|.+|++..+........
T Consensus 110 ~g~v~v~p~~~dG~l~~~v~~~~h~g~~p~~rQ~~~h~H~a~~tP~~-~~l~v~DLG~Dri~~y~~~dg~L~~~~~~--- 185 (346)
T COG2706 110 SGSVSVYPLQADGSLQPVVQVVKHTGSGPHERQESPHVHSANFTPDG-RYLVVPDLGTDRIFLYDLDDGKLTPADPA--- 185 (346)
T ss_pred CceEEEEEcccCCccccceeeeecCCCCCCccccCCccceeeeCCCC-CEEEEeecCCceEEEEEcccCcccccccc---
Confidence 58899998865 432211 1224444 8889999998 77777754 23799999986654332111
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
........+-|.|+|+++...+.+..+++|.+|..+................ ......
T Consensus 186 ---------------------~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~~~~g~~~~lQ~i~tlP-~dF~g~ 243 (346)
T COG2706 186 ---------------------EVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYNPAVGKFEELQTIDTLP-EDFTGT 243 (346)
T ss_pred ---------------------ccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEcCCCceEEEeeeeccCc-cccCCC
Confidence 1133456788999999999999998999999999987522221111111100 122333
Q ss_pred cCeeEEEeCCCCCEEEEEec-CCeEEEEEcccCCCCceEeeeecee-ceeEEEEEECCCCCEEEEecCC-CCEEEEecCC
Q 010390 275 HGISSLSQDSNGVFLTASCM-DHRIYLYNVLQLDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGSSD-GNAYVWQVNK 351 (512)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~-dg~i~i~d~~~~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~d-g~i~iw~~~~ 351 (512)
.+..++.+++||++|+++.. ...|.+|.+...... +........ ......+.+++.+++|+++..+ ..|.+|..+.
T Consensus 244 ~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~-L~~~~~~~teg~~PR~F~i~~~g~~Liaa~q~sd~i~vf~~d~ 322 (346)
T COG2706 244 NWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGK-LELVGITPTEGQFPRDFNINPSGRFLIAANQKSDNITVFERDK 322 (346)
T ss_pred CceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCE-EEEEEEeccCCcCCccceeCCCCCEEEEEccCCCcEEEEEEcC
Confidence 55778999999999998864 357888888654332 222222222 2235568899999999887765 5699998765
Q ss_pred CCCCCcee--ccccCCeEEEEeC
Q 010390 352 PQADPIKL--KSHDGEVTAVNWC 372 (512)
Q Consensus 352 ~~~~~~~~--~~h~~~v~~v~~~ 372 (512)
..-.+..+ ........||.|.
T Consensus 323 ~TG~L~~~~~~~~~p~Pvcv~f~ 345 (346)
T COG2706 323 ETGRLTLLGRYAVVPEPVCVKFL 345 (346)
T ss_pred CCceEEecccccCCCCcEEEEEc
Confidence 43322222 1233345566553
No 250
>KOG1409 consensus Uncharacterized conserved protein, contains WD40 repeats and FYVE domains [Function unknown]
Probab=99.45 E-value=9.7e-12 Score=106.39 Aligned_cols=259 Identities=13% Similarity=0.207 Sum_probs=189.0
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeC-CCCeeeeccc-CcCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDA-EKKKCTGALM-GHTGSIKSLCSHPTNSDILVSGSRDGSFA 176 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~-~~~~~~~~~~-~h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 176 (512)
..+..++||.+.|++...-|...-+++.+.|.+++||-- +.++.-..+. .-..+++++.+.++. ..|+.|-.+|++.
T Consensus 15 ~ll~~~eG~~d~vn~~~l~~~e~gv~~~s~drtvrv~lkrds~q~wpsI~~~mP~~~~~~~y~~e~-~~L~vg~~ngtvt 93 (404)
T KOG1409|consen 15 ELLSKIEGSQDDVNAAILIPKEEGVISVSEDRTVRVWLKRDSGQYWPSIYHYMPSPCSAMEYVSES-RRLYVGQDNGTVT 93 (404)
T ss_pred hhhhhhcCchhhhhhheeccCCCCeEEccccceeeeEEeccccccCchhhhhCCCCceEeeeeccc-eEEEEEEecceEE
Confidence 447778999999999999998888999999999999953 3344332322 234678999999877 8899999999998
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~ 256 (512)
-+.+...-.. ....+....|...+..+.|+.....++++| .|..+.---.+.+...
T Consensus 94 efs~sedfnk-----------------------m~~~r~~~~h~~~v~~~if~~~~e~V~s~~-~dk~~~~hc~e~~~~l 149 (404)
T KOG1409|consen 94 EFALSEDFNK-----------------------MTFLKDYLAHQARVSAIVFSLTHEWVLSTG-KDKQFAWHCTESGNRL 149 (404)
T ss_pred EEEhhhhhhh-----------------------cchhhhhhhhhcceeeEEecCCceeEEEec-cccceEEEeeccCCcc
Confidence 8876532111 112234557888999999998888888876 5665543333333322
Q ss_pred ecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEE
Q 010390 257 ITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHIL 336 (512)
Q Consensus 257 ~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~ 336 (512)
-... + ....+++.++-. +...|...|.|.+..+......++..+.++. ..+.+++|.+....|.
T Consensus 150 g~Y~---------~---~~~~t~~~~d~~--~~fvGd~~gqvt~lr~~~~~~~~i~~~~~h~--~~~~~l~Wd~~~~~Lf 213 (404)
T KOG1409|consen 150 GGYN---------F---ETPASALQFDAL--YAFVGDHSGQITMLKLEQNGCQLITTFNGHT--GEVTCLKWDPGQRLLF 213 (404)
T ss_pred cceE---------e---eccCCCCceeeE--EEEecccccceEEEEEeecCCceEEEEcCcc--cceEEEEEcCCCcEEE
Confidence 1110 0 001111222211 5566777788888777666666777777664 5588899999999999
Q ss_pred EecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 337 SGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 337 ~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
+|..|..+.+||+...+.....+.+|.+.|..+...+.- +.|++++.||.|.+|+++..+..
T Consensus 214 Sg~~d~~vi~wdigg~~g~~~el~gh~~kV~~l~~~~~t-~~l~S~~edg~i~~w~mn~~r~e 275 (404)
T KOG1409|consen 214 SGASDHSVIMWDIGGRKGTAYELQGHNDKVQALSYAQHT-RQLISCGEDGGIVVWNMNVKRVE 275 (404)
T ss_pred eccccCceEEEeccCCcceeeeeccchhhhhhhhhhhhh-eeeeeccCCCeEEEEeccceeec
Confidence 999999999999988777677889999999999888877 89999999999999999876543
No 251
>KOG0280 consensus Uncharacterized conserved protein [Amino acid transport and metabolism]
Probab=99.44 E-value=1.4e-11 Score=103.16 Aligned_cols=212 Identities=13% Similarity=0.162 Sum_probs=150.2
Q ss_pred cCCcceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC---CCcEEEEEEecCCCEEEE
Q 010390 50 ETPPLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH---QNAIFDLCWIKEDTNILT 125 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h---~~~V~~l~~s~~~~~l~s 125 (512)
+..++.+.|+.--.+|. .++-+..+|.|.+|........ ..+..+..- .....++.|++.+..+++
T Consensus 69 ts~~~dm~w~~~~~~g~~~l~~a~a~G~i~~~r~~~~~ss----------~~L~~ls~~ki~~~~~lslD~~~~~~~i~v 138 (339)
T KOG0280|consen 69 TSTEFDMLWRIRETDGDFNLLDAHARGQIQLYRNDEDESS----------VHLRGLSSKKISVVEALSLDISTSGTKIFV 138 (339)
T ss_pred ccccceeeeeeccCCccceeeeccccceEEEEeeccceee----------eeecccchhhhhheeeeEEEeeccCceEEE
Confidence 44567777766556676 6777788999999976543210 111111111 123568889999999999
Q ss_pred EeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 126 ASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
+..+|.+.+-+...... ++.++.|.-..+...|+...++++.+|+.|+.+..||++....-.
T Consensus 139 s~s~G~~~~v~~t~~~le~vq~wk~He~E~Wta~f~~~~pnlvytGgDD~~l~~~D~R~p~~~i---------------- 202 (339)
T KOG0280|consen 139 SDSRGSISGVYETEMVLEKVQTWKVHEFEAWTAKFSDKEPNLVYTGGDDGSLSCWDIRIPKTFI---------------- 202 (339)
T ss_pred EcCCCcEEEEecceeeeeecccccccceeeeeeecccCCCceEEecCCCceEEEEEecCCccee----------------
Confidence 99999999766555543 448899999999999999888999999999999999998432110
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
....+.|...|.++.-+|.....+++|+.|-.|++||+++...... .....++|..+.++
T Consensus 203 ---------~~n~kvH~~GV~SI~ss~~~~~~I~TGsYDe~i~~~DtRnm~kPl~-----------~~~v~GGVWRi~~~ 262 (339)
T KOG0280|consen 203 ---------WHNSKVHTSGVVSIYSSPPKPTYIATGSYDECIRVLDTRNMGKPLF-----------KAKVGGGVWRIKHH 262 (339)
T ss_pred ---------eecceeeecceEEEecCCCCCceEEEeccccceeeeehhcccCccc-----------cCccccceEEEEec
Confidence 1123467889999999987777777799999999999997655432 23334789999999
Q ss_pred CCCC-EEEEEecCCeEEEEEcccCC
Q 010390 284 SNGV-FLTASCMDHRIYLYNVLQLD 307 (512)
Q Consensus 284 ~~~~-~l~~~~~dg~i~i~d~~~~~ 307 (512)
|.-. .|+.++.-+-.+|.+.....
T Consensus 263 p~~~~~lL~~CMh~G~ki~~~~~~~ 287 (339)
T KOG0280|consen 263 PEIFHRLLAACMHNGAKILDSSDKV 287 (339)
T ss_pred chhhhHHHHHHHhcCceEEEecccc
Confidence 8543 34445555556777765543
No 252
>COG2706 3-carboxymuconate cyclase [Carbohydrate transport and metabolism]
Probab=99.42 E-value=3e-09 Score=92.54 Aligned_cols=292 Identities=10% Similarity=0.107 Sum_probs=181.7
Q ss_pred CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---CcEEEEeCCC--Ceee--ecc
Q 010390 74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD---QTIKIWDAEK--KKCT--GAL 146 (512)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d---g~i~iwd~~~--~~~~--~~~ 146 (512)
+.-|.+|++++..... ....+-.+.+..+-|+|+|++++|.++..+ |.|.-|.++. |+.. ...
T Consensus 15 s~gI~v~~ld~~~g~l----------~~~~~v~~~~nptyl~~~~~~~~LY~v~~~~~~ggvaay~iD~~~G~Lt~ln~~ 84 (346)
T COG2706 15 SQGIYVFNLDTKTGEL----------SLLQLVAELGNPTYLAVNPDQRHLYVVNEPGEEGGVAAYRIDPDDGRLTFLNRQ 84 (346)
T ss_pred CCceEEEEEeCccccc----------chhhhccccCCCceEEECCCCCEEEEEEecCCcCcEEEEEEcCCCCeEEEeecc
Confidence 4569999988543211 122334567889999999999999987664 6677776654 5432 222
Q ss_pred cCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 147 MGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 147 ~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
.....+-+.+++++++ ++++++.. -|.|.++-++....+........ +. .... ..+.....+-.
T Consensus 85 ~~~g~~p~yvsvd~~g-~~vf~AnY~~g~v~v~p~~~dG~l~~~v~~~~----------h~---g~~p-~~rQ~~~h~H~ 149 (346)
T COG2706 85 TLPGSPPCYVSVDEDG-RFVFVANYHSGSVSVYPLQADGSLQPVVQVVK----------HT---GSGP-HERQESPHVHS 149 (346)
T ss_pred ccCCCCCeEEEECCCC-CEEEEEEccCceEEEEEcccCCccccceeeee----------cC---CCCC-CccccCCccce
Confidence 2122334789999988 66666654 57999999875432221100000 00 0000 00111223778
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVL 304 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~ 304 (512)
..+.|++++++++.----.|.+|++..+....... .......+...|.|+|++++.++.+ -+++|.+|...
T Consensus 150 a~~tP~~~~l~v~DLG~Dri~~y~~~dg~L~~~~~--------~~v~~G~GPRHi~FHpn~k~aY~v~EL~stV~v~~y~ 221 (346)
T COG2706 150 ANFTPDGRYLVVPDLGTDRIFLYDLDDGKLTPADP--------AEVKPGAGPRHIVFHPNGKYAYLVNELNSTVDVLEYN 221 (346)
T ss_pred eeeCCCCCEEEEeecCCceEEEEEcccCccccccc--------cccCCCCCcceEEEcCCCcEEEEEeccCCEEEEEEEc
Confidence 88999999999876555689999999665443211 1224456788999999999887665 68999999987
Q ss_pred cCCCCceEeeee-------ceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCCCCCCCcee---ccccCCeEEEEeCC
Q 010390 305 QLDKGPIQHFSG-------CRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNKPQADPIKL---KSHDGEVTAVNWCP 373 (512)
Q Consensus 305 ~~~~~~~~~~~~-------~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~~~~~~~~~---~~h~~~v~~v~~~~ 373 (512)
.. ...+..++. .......-.+.+++||++|.+... ...|.+|.+......+... .-+....+...+++
T Consensus 222 ~~-~g~~~~lQ~i~tlP~dF~g~~~~aaIhis~dGrFLYasNRg~dsI~~f~V~~~~g~L~~~~~~~teg~~PR~F~i~~ 300 (346)
T COG2706 222 PA-VGKFEELQTIDTLPEDFTGTNWAAAIHISPDGRFLYASNRGHDSIAVFSVDPDGGKLELVGITPTEGQFPRDFNINP 300 (346)
T ss_pred CC-CceEEEeeeeccCccccCCCCceeEEEECCCCCEEEEecCCCCeEEEEEEcCCCCEEEEEEEeccCCcCCccceeCC
Confidence 63 222222221 112234556889999999987754 3468888886543322222 22334578899999
Q ss_pred CCCCeEEEEeCC-CcEEEEeCC--CCcccc
Q 010390 374 NEAGKIVTSSDD-YTVRLWSLE--NSRCSS 400 (512)
Q Consensus 374 ~~~~~l~s~~~d-g~i~vwd~~--~~~~~~ 400 (512)
.+ ++|+++..| ..|.++..+ +|++..
T Consensus 301 ~g-~~Liaa~q~sd~i~vf~~d~~TG~L~~ 329 (346)
T COG2706 301 SG-RFLIAANQKSDNITVFERDKETGRLTL 329 (346)
T ss_pred CC-CEEEEEccCCCcEEEEEEcCCCceEEe
Confidence 99 777777754 578888664 444433
No 253
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.42 E-value=1.5e-12 Score=133.21 Aligned_cols=226 Identities=15% Similarity=0.201 Sum_probs=162.8
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccC-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMG-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
+.+-..|.++.=+|...+.+||+.||.|++|....++.+..++. ....|+.+.|+.+| +.+..+..||.+.+|.....
T Consensus 2205 k~~v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~v~~~rt~g~s~vtr~~f~~qG-nk~~i~d~dg~l~l~q~~pk 2283 (2439)
T KOG1064|consen 2205 KHPVENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQVVCFRTAGNSRVTRSRFNHQG-NKFGIVDGDGDLSLWQASPK 2283 (2439)
T ss_pred ecccCceeeecCCCCCceEEecCCCceEEEEeccCCCeEEEeeccCcchhhhhhhcccC-CceeeeccCCceeecccCCc
Confidence 44567788888889899999999999999999998888776642 23789999999988 88889999999999998721
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe--ecCCeEEEEeccCccceecccC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS--AVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g--~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
.....+.|+.....+.|.. ..++++| .+++.+.+||..-......
T Consensus 2284 ----------------------------~~~s~qchnk~~~Df~Fi~--s~~~tag~s~d~~n~~lwDtl~~~~~s~--- 2330 (2439)
T KOG1064|consen 2284 ----------------------------PYTSWQCHNKALSDFRFIG--SLLATAGRSSDNRNVCLWDTLLPPMNSL--- 2330 (2439)
T ss_pred ----------------------------ceeccccCCccccceeeee--hhhhccccCCCCCcccchhcccCcccce---
Confidence 1124456777777887776 4445444 4678999999765433222
Q ss_pred CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
....|.++++++++-|..+.|++|+.+|.|++||++..+ ....+.. +. ...++++|+..
T Consensus 2331 -------v~~~H~~gaT~l~~~P~~qllisggr~G~v~l~D~rqrq--l~h~~~~-----------~~-~~~~f~~~ss~ 2389 (2439)
T KOG1064|consen 2331 -------VHTCHDGGATVLAYAPKHQLLISGGRKGEVCLFDIRQRQ--LRHTFQA-----------LD-TREYFVTGSSE 2389 (2439)
T ss_pred -------eeeecCCCceEEEEcCcceEEEecCCcCcEEEeehHHHH--HHHHhhh-----------hh-hhheeeccCcc
Confidence 347888999999999999999999999999999997632 2222221 33 45789999999
Q ss_pred CCEEEEecCCCCCCCceeccc--cCC--e--EEEEeCCCCCCeEEEEeCCCc
Q 010390 342 GNAYVWQVNKPQADPIKLKSH--DGE--V--TAVNWCPNEAGKIVTSSDDYT 387 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~~~h--~~~--v--~~v~~~~~~~~~l~s~~~dg~ 387 (512)
|.|+||++............| .+- + ..+...+. +.|.+|+.||+
T Consensus 2390 g~ikIw~~s~~~ll~~~p~e~ak~gfFr~~g~Q~~v~~~--nrifsCgad~~ 2439 (2439)
T KOG1064|consen 2390 GNIKIWRLSEFGLLHTFPSEHAKQGFFRNIGMQINVGQC--NRIFSCGADGT 2439 (2439)
T ss_pred cceEEEEccccchhhcCchhhcccchhhhcCceeeeccC--ceEEEecCCCC
Confidence 999999998764422211122 110 1 22222222 57888888874
No 254
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.41 E-value=1.2e-11 Score=104.45 Aligned_cols=268 Identities=19% Similarity=0.262 Sum_probs=168.1
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC------------CcEEEEEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ------------NAIFDLCW 116 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~------------~~V~~l~~ 116 (512)
..+.|++|.| ...|.|||+|...|.|.+|.-+.... -+.+-...+++|. +.|..+.|
T Consensus 25 ead~ItaVef---d~tg~YlatGDkgGRVvlfer~~s~~--------ceykf~teFQshe~EFDYLkSleieEKin~I~w 93 (460)
T COG5170 25 EADKITAVEF---DETGLYLATGDKGGRVVLFEREKSYG--------CEYKFFTEFQSHELEFDYLKSLEIEEKINAIEW 93 (460)
T ss_pred ccceeeEEEe---ccccceEeecCCCceEEEeecccccc--------cchhhhhhhcccccchhhhhhccHHHHhhheee
Confidence 4566889988 88899999999999999998654331 1112244455554 46889999
Q ss_pred ecCC--CEEEEEeCCCcEEEEeCCCCe-------------------ee-----------------------ecc-cCcCC
Q 010390 117 IKED--TNILTASGDQTIKIWDAEKKK-------------------CT-----------------------GAL-MGHTG 151 (512)
Q Consensus 117 s~~~--~~l~s~~~dg~i~iwd~~~~~-------------------~~-----------------------~~~-~~h~~ 151 (512)
..++ ..++..+.|.+|++|.+.... ++ +.. ..|.-
T Consensus 94 ~~~t~r~hFLlstNdktiKlWKiyeknlk~va~nnls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~y 173 (460)
T COG5170 94 FDDTGRNHFLLSTNDKTIKLWKIYEKNLKVVAENNLSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPY 173 (460)
T ss_pred ecCCCcceEEEecCCceeeeeeeecccchhhhccccccccccccCCCcCCHHHhhcccccccceEEEeccceecccccee
Confidence 8744 345666789999999875431 00 011 34777
Q ss_pred CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec
Q 010390 152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD 231 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 231 (512)
.|++++|..+. ..++++ .|=.|.+|++.-....... . .-.......-..-|++..|+|.
T Consensus 174 hiNSiS~NsD~-et~lSa-DdLrINLWnl~i~D~sFnI------V-------------DiKP~nmeeLteVItSaeFhp~ 232 (460)
T COG5170 174 HINSISFNSDK-ETLLSA-DDLRINLWNLEIIDGSFNI------V-------------DIKPHNMEELTEVITSAEFHPE 232 (460)
T ss_pred EeeeeeecCch-heeeec-cceeeeeccccccCCceEE------E-------------eccCccHHHHHHHHhhcccCHh
Confidence 78899998876 555554 5678999998633211100 0 0000011112235788899997
Q ss_pred CCEEEEEeecCCeEEEEeccCcccee-----cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390 232 EVSIATASAVNSIVKFWDTRNLKAQI-----TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 232 ~~~l~~~g~~dg~i~iwd~~~~~~~~-----~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 306 (512)
...++.-++..|.|++-|++...... ......+.....+......|..+.|+++|+++++-. --++++||++.
T Consensus 233 ~cn~fmYSsSkG~Ikl~DlRq~alcdn~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRd-yltvkiwDvnm- 310 (460)
T COG5170 233 MCNVFMYSSSKGEIKLNDLRQSALCDNSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRD-YLTVKIWDVNM- 310 (460)
T ss_pred HcceEEEecCCCcEEehhhhhhhhccCchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEec-cceEEEEeccc-
Confidence 76665555579999999998432211 000000111112334456688999999999988764 45899999865
Q ss_pred CCCceEeeeecee----------ce---eEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 307 DKGPIQHFSGCRI----------ES---FYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 307 ~~~~~~~~~~~~~----------~~---~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
...++.+..-|.. .. .-..+.||.|.+.+++|+..+..-+|-..
T Consensus 311 ~k~pikTi~~h~~l~~~l~d~YEnDaifdkFeisfSgd~~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 311 AKNPIKTIPMHCDLMDELNDVYENDAIFDKFEISFSGDDKHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred ccCCceeechHHHHHHHHHhhhhccceeeeEEEEecCCcccccccccccceeeeccc
Confidence 3455555533210 00 11246788999999999998888888643
No 255
>KOG0974 consensus WD-repeat protein WDR6, WD repeat superfamily [General function prediction only]
Probab=99.41 E-value=3.2e-11 Score=117.81 Aligned_cols=284 Identities=15% Similarity=0.107 Sum_probs=182.3
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCC--CcEEEEEEecCCCEEEEE
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQ--NAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~--~~V~~l~~s~~~~~l~s~ 126 (512)
|-+++.++++. + +||.+|. -..|.+||+..+..... .....-...|. +.+.. .+.+++++
T Consensus 6 ~~~~l~~~~~~--~---~~llag~-gp~i~~yd~~s~~li~~-------~~~~~~~~~H~~e~~~~l-----~~~~~v~~ 67 (967)
T KOG0974|consen 6 SLGPLNLPQLV--S---DYLLAGS-GPEILVYDLSSGCLIRH-------LIQSKILEVHRGEGKVKL-----LSGKIVTC 67 (967)
T ss_pred ccccccchhhc--c---ceeeecC-CCceEEeeCCchhHhhh-------hhhhccccccccccccee-----ccceEEEE
Confidence 55666777764 2 6777765 34799999887643111 11122223341 11111 24456666
Q ss_pred eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
..-+.+..=+... +....+. +.|....+.-++ ..++.+..+..+.+||.................
T Consensus 68 ~~~~~v~~~~~~~-~~~~~~s---~wi~g~~l~~e~-k~i~l~~~~ns~~i~d~~~~~~~~~i~~~er~~---------- 132 (967)
T KOG0974|consen 68 AKSDEVYVKEASN-QIIERFS---DWIFGAKLFEEN-KKIALVTSRNSLLIRDSKNSSVLSKIQSDERCT---------- 132 (967)
T ss_pred Eeecceeecchhh-hhhhhcc---ccccccchhhhc-ceEEEEEcCceEEEEecccCceehhcCCCceEE----------
Confidence 5555454433221 2222222 233334444444 678888888899999998766544332211100
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (512)
-....-+..+++.-+ +.+|+.-+.|.+|+....+... ...+|.+.|.++.++.||
T Consensus 133 -------------l~~~~~~g~s~~~~~-i~~gsv~~~iivW~~~~dn~p~-----------~l~GHeG~iF~i~~s~dg 187 (967)
T KOG0974|consen 133 -------------LYSSLIIGDSAEELY-IASGSVFGEIIVWKPHEDNKPI-----------RLKGHEGSIFSIVTSLDG 187 (967)
T ss_pred -------------EEeEEEEeccCcEEE-EEeccccccEEEEeccccCCcc-----------eecccCCceEEEEEccCC
Confidence 001111222333334 4457788999999988332221 478999999999999999
Q ss_pred CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc-CC
Q 010390 287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-GE 365 (512)
Q Consensus 287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-~~ 365 (512)
.++++.+.|.++++|++.+.+... ..+..+...+..++|.|+ .+++++.|.+.++|+.+..+. ..+.+|. ..
T Consensus 188 ~~i~s~SdDRsiRlW~i~s~~~~~---~~~fgHsaRvw~~~~~~n--~i~t~gedctcrvW~~~~~~l--~~y~~h~g~~ 260 (967)
T KOG0974|consen 188 RYIASVSDDRSIRLWPIDSREVLG---CTGFGHSARVWACCFLPN--RIITVGEDCTCRVWGVNGTQL--EVYDEHSGKG 260 (967)
T ss_pred cEEEEEecCcceeeeecccccccC---cccccccceeEEEEeccc--eeEEeccceEEEEEeccccee--hhhhhhhhcc
Confidence 999999999999999997754433 223334566888999998 999999999999997765544 3667774 57
Q ss_pred eEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 366 VTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 366 v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
|..++..++. ..++|++.|+.+++|++.....
T Consensus 261 iw~~~~~~~~-~~~vT~g~Ds~lk~~~l~~r~~ 292 (967)
T KOG0974|consen 261 IWKIAVPIGV-IIKVTGGNDSTLKLWDLNGRGL 292 (967)
T ss_pred eeEEEEcCCc-eEEEeeccCcchhhhhhhcccc
Confidence 9999999888 8999999999999999876543
No 256
>TIGR02800 propeller_TolB tol-pal system beta propeller repeat protein TolB. The Tol-PAL system is required for bacterial outer membrane integrity. E. coli TolB is involved in the tonB-independent uptake of group A colicins (colicins A, E1, E2, E3 and K), and is necessary for the colicins to reach their respective targets after initial binding to the bacteria. It is also involved in uptake of filamentous DNA. Study of its structure suggest that the TolB protein might be involved in the recycling of peptidoglycan or in its covalent linking with lipoproteins. The Tol-Pal system is also implicated in pathogenesis of E. coli, Haemophilus ducreyi, Salmonella enterica and Vibrio cholerae, but the mechanism(s) is unclear.
Probab=99.39 E-value=1.2e-10 Score=112.50 Aligned_cols=216 Identities=13% Similarity=0.090 Sum_probs=135.5
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
...|.++|..... ...+..+...+...+|+|++ +.|+.+..+ ..|++||+.++....
T Consensus 169 ~~~l~~~d~~g~~-~~~l~~~~~~~~~p~~Spdg-~~la~~~~~~~~~~i~v~d~~~g~~~~------------------ 228 (417)
T TIGR02800 169 RYELQVADYDGAN-PQTITRSREPILSPAWSPDG-QKLAYVSFESGKPEIYVQDLATGQREK------------------ 228 (417)
T ss_pred cceEEEEcCCCCC-CEEeecCCCceecccCCCCC-CEEEEEEcCCCCcEEEEEECCCCCEEE------------------
Confidence 3468888875443 44455566678999999998 666665543 479999987653211
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD 283 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~ 283 (512)
...+...+.++.|+|+++.++++...++ .|++||+.++.... ...+........|+
T Consensus 229 ----------~~~~~~~~~~~~~spDg~~l~~~~~~~~~~~i~~~d~~~~~~~~------------l~~~~~~~~~~~~s 286 (417)
T TIGR02800 229 ----------VASFPGMNGAPAFSPDGSKLAVSLSKDGNPDIYVMDLDGKQLTR------------LTNGPGIDTEPSWS 286 (417)
T ss_pred ----------eecCCCCccceEECCCCCEEEEEECCCCCccEEEEECCCCCEEE------------CCCCCCCCCCEEEC
Confidence 1122334567899999998887654444 58888888764332 11222334567899
Q ss_pred CCCCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC---CEEEEecCCCCCCCc
Q 010390 284 SNGVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG---NAYVWQVNKPQADPI 357 (512)
Q Consensus 284 ~~~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg---~i~iw~~~~~~~~~~ 357 (512)
|+|+.|+..+. ++ .|+++|+.... ...+... ........|+|+|++|+.++.++ .|.+||+.++.. .
T Consensus 287 ~dg~~l~~~s~~~g~~~iy~~d~~~~~---~~~l~~~--~~~~~~~~~spdg~~i~~~~~~~~~~~i~~~d~~~~~~--~ 359 (417)
T TIGR02800 287 PDGKSIAFTSDRGGSPQIYMMDADGGE---VRRLTFR--GGYNASPSWSPDGDLIAFVHREGGGFNIAVMDLDGGGE--R 359 (417)
T ss_pred CCCCEEEEEECCCCCceEEEEECCCCC---EEEeecC--CCCccCeEECCCCCEEEEEEccCCceEEEEEeCCCCCe--E
Confidence 99998876654 33 57777765432 2222211 12344578999999998887765 788888877543 2
Q ss_pred eeccccCCeEEEEeCCCCCCeEEEEeCCC---cEEEEeCCC
Q 010390 358 KLKSHDGEVTAVNWCPNEAGKIVTSSDDY---TVRLWSLEN 395 (512)
Q Consensus 358 ~~~~h~~~v~~v~~~~~~~~~l~s~~~dg---~i~vwd~~~ 395 (512)
.+... .......|+|++ +.|+..+.++ .+.+.+...
T Consensus 360 ~l~~~-~~~~~p~~spdg-~~l~~~~~~~~~~~l~~~~~~g 398 (417)
T TIGR02800 360 VLTDT-GLDESPSFAPNG-RMILYATTRGGRGVLGLVSTDG 398 (417)
T ss_pred EccCC-CCCCCceECCCC-CEEEEEEeCCCcEEEEEEECCC
Confidence 22222 234556899999 6666665543 355555443
No 257
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.38 E-value=2.5e-09 Score=96.91 Aligned_cols=273 Identities=10% Similarity=-0.003 Sum_probs=155.9
Q ss_pred CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCeeee
Q 010390 75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----------DQTIKIWDAEKKKCTG 144 (512)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~ 144 (512)
+.|.+.|..+.+. +.++..-..+- .+ ++||++.|+.+.. +..|.+||..+.+.+.
T Consensus 27 ~~v~ViD~~~~~v-------------~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~ 91 (352)
T TIGR02658 27 TQVYTIDGEAGRV-------------LGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIA 91 (352)
T ss_pred ceEEEEECCCCEE-------------EEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEe
Confidence 8999999987643 33333222222 24 8999999886655 7889999999999988
Q ss_pred cccCcC-------CCEEEEEeeCCCCCeEEEEe-C-CCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390 145 ALMGHT-------GSIKSLCSHPTNSDILVSGS-R-DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 145 ~~~~h~-------~~v~~l~~~~~~~~~l~s~~-~-dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
.+.-.. .....++++|++ ++|+... . +..|.+.|+.+++.........+.. .
T Consensus 92 ~i~~p~~p~~~~~~~~~~~~ls~dg-k~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~~~~------------------v 152 (352)
T TIGR02658 92 DIELPEGPRFLVGTYPWMTSLTPDN-KTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPDCYH------------------I 152 (352)
T ss_pred EEccCCCchhhccCccceEEECCCC-CEEEEecCCCCCEEEEEECCCCcEEEEEeCCCCcE------------------E
Confidence 776321 233478899998 6665544 4 7899999999876544221110000 0
Q ss_pred cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEec
Q 010390 216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCM 294 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~ 294 (512)
+. ...-..+..+.|+..+..+-..+|....= +.. .. ... .......+ .+.+ +|.++++...
T Consensus 153 y~--t~e~~~~~~~~Dg~~~~v~~d~~g~~~~~---~~~-vf---~~~-----~~~v~~rP----~~~~~dg~~~~vs~e 214 (352)
T TIGR02658 153 FP--TANDTFFMHCRDGSLAKVGYGTKGNPKIK---PTE-VF---HPE-----DEYLINHP----AYSNKSGRLVWPTYT 214 (352)
T ss_pred EE--ecCCccEEEeecCceEEEEecCCCceEEe---eee-ee---cCC-----ccccccCC----ceEcCCCcEEEEecC
Confidence 00 00111112223333333222223321100 000 00 000 00000111 3344 8888887766
Q ss_pred CCeEEEEEcccCCCCceEeee---ece-----eceeEEEEEECCCCCEEEEec----------CCCCEEEEecCCCCCCC
Q 010390 295 DHRIYLYNVLQLDKGPIQHFS---GCR-----IESFYVKSEICPNASHILSGS----------SDGNAYVWQVNKPQADP 356 (512)
Q Consensus 295 dg~i~i~d~~~~~~~~~~~~~---~~~-----~~~~~~~~~~s~~~~~l~~g~----------~dg~i~iw~~~~~~~~~ 356 (512)
|.|.+.|+............ ... ....+.-++++++++.+++.. ..+.|.++|..+.+...
T Consensus 215 -G~V~~id~~~~~~~~~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~ 293 (352)
T TIGR02658 215 -GKIFQIDLSSGDAKFLPAIEAFTEAEKADGWRPGGWQQVAYHRARDRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLR 293 (352)
T ss_pred -CeEEEEecCCCcceecceeeeccccccccccCCCcceeEEEcCCCCEEEEEecCCccccccCCCCEEEEEECCCCeEEE
Confidence 99999997543222111111 100 011122389999999887742 12469999998877643
Q ss_pred ceeccccCCeEEEEeCCCCCCeEEEEe-CCCcEEEEeCCCCcccccc
Q 010390 357 IKLKSHDGEVTAVNWCPNEAGKIVTSS-DDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 357 ~~~~~h~~~v~~v~~~~~~~~~l~s~~-~dg~i~vwd~~~~~~~~~~ 402 (512)
....+ ..+..++++||+..+|++.. .++.|.+.|..+++.+...
T Consensus 294 ~i~vG--~~~~~iavS~Dgkp~lyvtn~~s~~VsViD~~t~k~i~~i 338 (352)
T TIGR02658 294 KIELG--HEIDSINVSQDAKPLLYALSTGDKTLYIFDAETGKELSSV 338 (352)
T ss_pred EEeCC--CceeeEEECCCCCeEEEEeCCCCCcEEEEECcCCeEEeee
Confidence 33333 47999999999931666554 7889999999999887764
No 258
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.38 E-value=3.4e-10 Score=108.05 Aligned_cols=245 Identities=10% Similarity=0.067 Sum_probs=141.0
Q ss_pred CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE---EEeCC--CcEEEEeCCCCeeeecccCc
Q 010390 75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---TASGD--QTIKIWDAEKKKCTGALMGH 149 (512)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~---s~~~d--g~i~iwd~~~~~~~~~~~~h 149 (512)
..|.+.|.+... .+.+......+.+-.|+|||+.++ +...+ ..|.+.++.+++.... ...
T Consensus 165 ~~l~~~d~dG~~--------------~~~lt~~~~~~~sP~wSPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~~~l-t~~ 229 (428)
T PRK01029 165 GELWSVDYDGQN--------------LRPLTQEHSLSITPTWMHIGSGFPYLYVSYKLGVPKIFLGSLENPAGKKI-LAL 229 (428)
T ss_pred ceEEEEcCCCCC--------------ceEcccCCCCcccceEccCCCceEEEEEEccCCCceEEEEECCCCCceEe-ecC
Confidence 357777776543 223344556677889999997532 33334 3577788887754332 223
Q ss_pred CCCEEEEEeeCCCCCeEEEEeCCC----cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 150 TGSIKSLCSHPTNSDILVSGSRDG----SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 150 ~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
.+......|+|+|..++++...+| .+..|++..+.... ..............
T Consensus 230 ~g~~~~p~wSPDG~~Laf~s~~~g~~di~~~~~~~~~g~~g~------------------------~~~lt~~~~~~~~~ 285 (428)
T PRK01029 230 QGNQLMPTFSPRKKLLAFISDRYGNPDLFIQSFSLETGAIGK------------------------PRRLLNEAFGTQGN 285 (428)
T ss_pred CCCccceEECCCCCEEEEEECCCCCcceeEEEeecccCCCCc------------------------ceEeecCCCCCcCC
Confidence 444556899999944444443333 33446655321000 00001111123456
Q ss_pred EEEeecCCEEEEEeecCCeEEEEe--ccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEE
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWD--TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYL 300 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i 300 (512)
..|+|||+.++.++..+|...+|. +........ ........+....|+|||+.|+..+.+ ..|.+
T Consensus 286 p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g~~~~----------~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v 355 (428)
T PRK01029 286 PSFSPDGTRLVFVSNKDGRPRIYIMQIDPEGQSPR----------LLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICV 355 (428)
T ss_pred eEECCCCCEEEEEECCCCCceEEEEECcccccceE----------EeccCCCCccceeECCCCCEEEEEEcCCCCcEEEE
Confidence 799999999888765567555554 432111110 122223456788999999988876543 47999
Q ss_pred EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC---CCCEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS---DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 375 (512)
||+.+.+.. .+.... .......|+|||++|+.... ...|+++++..++. ..+....+.+...+|+|..
T Consensus 356 ~dl~~g~~~---~Lt~~~--~~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g~~--~~Lt~~~g~~~~p~Ws~~~ 426 (428)
T PRK01029 356 YDLATGRDY---QLTTSP--ENKESPSWAIDSLHLVYSAGNSNESELYLISLITKKT--RKIVIGSGEKRFPSWGAFP 426 (428)
T ss_pred EECCCCCeE---EccCCC--CCccceEECCCCCEEEEEECCCCCceEEEEECCCCCE--EEeecCCCcccCceecCCC
Confidence 998664332 222111 12345789999998865332 34688888877654 2333345567788888754
No 259
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.37 E-value=5.7e-10 Score=101.72 Aligned_cols=286 Identities=10% Similarity=0.123 Sum_probs=174.1
Q ss_pred eEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------
Q 010390 55 AVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------ 128 (512)
Q Consensus 55 ~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------ 128 (512)
.=.+..|||-|.||++--..| |.+|--.+- ..++.+ .| -.|.-+.|||+.+||+|-+.
T Consensus 212 Tetyv~wSP~GTYL~t~Hk~G-I~lWGG~~f-------------~r~~RF-~H-p~Vq~idfSP~EkYLVT~s~~p~~~~ 275 (698)
T KOG2314|consen 212 TETYVRWSPKGTYLVTFHKQG-IALWGGESF-------------DRIQRF-YH-PGVQFIDFSPNEKYLVTYSPEPIIVE 275 (698)
T ss_pred eeeeEEecCCceEEEEEeccc-eeeecCccH-------------HHHHhc-cC-CCceeeecCCccceEEEecCCccccC
Confidence 344566699999999988776 889953321 223333 34 46888999999999998654
Q ss_pred -----CCcEEEEeCCCCeeeecccCc--CCCEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 129 -----DQTIKIWDAEKKKCTGALMGH--TGSIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 129 -----dg~i~iwd~~~~~~~~~~~~h--~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
...+.|||+.+|...+.+... ...++ -..|+.++ .++|--.. ..|.||+.....+...
T Consensus 276 ~~d~e~~~l~IWDI~tG~lkrsF~~~~~~~~~WP~frWS~Dd-Ky~Arm~~-~sisIyEtpsf~lld~------------ 341 (698)
T KOG2314|consen 276 EDDNEGQQLIIWDIATGLLKRSFPVIKSPYLKWPIFRWSHDD-KYFARMTG-NSISIYETPSFMLLDK------------ 341 (698)
T ss_pred cccCCCceEEEEEccccchhcceeccCCCccccceEEeccCC-ceeEEecc-ceEEEEecCceeeecc------------
Confidence 256999999999988887652 22333 35688887 78877766 4799998764322211
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeecC----CeEEEEeccCccceecccCCCccccccccccccC
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN----SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG 276 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d----g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 276 (512)
....-..|....|+|.+..|+.=.-.. ..+.+-.+.+.+.+... ..+.-.
T Consensus 342 ---------------Kslki~gIr~FswsP~~~llAYwtpe~~~~parvtL~evPs~~~iRt~-----------nlfnVs 395 (698)
T KOG2314|consen 342 ---------------KSLKISGIRDFSWSPTSNLLAYWTPETNNIPARVTLMEVPSKREIRTK-----------NLFNVS 395 (698)
T ss_pred ---------------cccCCccccCcccCCCcceEEEEcccccCCcceEEEEecCccceeeec-----------cceeee
Confidence 011123678888999877766422111 13444444444433321 111122
Q ss_pred eeEEEeCCCCCEEEEEe----------cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC---CCC
Q 010390 277 ISSLSQDSNGVFLTASC----------MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS---DGN 343 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~----------~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~---dg~ 343 (512)
=..|.|-.+|.+|+.-- .-..+.|+.++..+ .++... .....+...+|.|.|+.+++-+. ..+
T Consensus 396 DckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKd-Ipve~v---elke~vi~FaWEP~gdkF~vi~g~~~k~t 471 (698)
T KOG2314|consen 396 DCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKD-IPVEVV---ELKESVIAFAWEPHGDKFAVISGNTVKNT 471 (698)
T ss_pred ccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccC-CCceee---ecchheeeeeeccCCCeEEEEEccccccc
Confidence 23456677787776532 11234455554321 222222 22345777999999988765433 357
Q ss_pred EEEEecCC-CCCCCceeccccCCeEEEEeCCCCCCeEEEEe---CCCcEEEEeCCCCccccc
Q 010390 344 AYVWQVNK-PQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS---DDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 344 i~iw~~~~-~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~ 401 (512)
+.+|.+++ .........-.....+.+.|+|.| ++++.+. ..|.+.++|+....+..+
T Consensus 472 vsfY~~e~~~~~~~lVk~~dk~~~N~vfwsPkG-~fvvva~l~s~~g~l~F~D~~~a~~k~~ 532 (698)
T KOG2314|consen 472 VSFYAVETNIKKPSLVKELDKKFANTVFWSPKG-RFVVVAALVSRRGDLEFYDTDYADLKDT 532 (698)
T ss_pred eeEEEeecCCCchhhhhhhcccccceEEEcCCC-cEEEEEEecccccceEEEecchhhhhhc
Confidence 99998873 222111111123467889999999 7776653 578999999987555554
No 260
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.36 E-value=1.5e-10 Score=106.51 Aligned_cols=192 Identities=16% Similarity=0.167 Sum_probs=145.8
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe------c--------------CCC
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI------K--------------EDT 121 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s------~--------------~~~ 121 (512)
+|-+.|+|....||.++|||...++... +..+.. .-.+..++..|. | +..
T Consensus 2 ~~~~~~~A~~~~~g~l~iw~t~~~~~~~-------e~~p~~---~~s~t~~~~~w~L~~~~s~~k~~~~~~~~~~s~~t~ 71 (541)
T KOG4547|consen 2 PPALDYFALSTGDGRLRIWDTAKNQLQQ-------EFAPIA---SLSGTCTYTKWGLSADYSPMKWLSLEKAKKASLDTS 71 (541)
T ss_pred CchhheEeecCCCCeEEEEEccCceeee-------eeccch---hccCcceeEEEEEEeccchHHHHhHHHHhhccCCce
Confidence 5667899999999999999988764311 111121 223344444443 1 334
Q ss_pred EEEEEeCCCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 122 NILTASGDQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
.|+-|...|.|.+|++..++....+. .|.+.|+++.++.+- ..|.+++.|+.+..|+........
T Consensus 72 ~lvlgt~~g~v~~ys~~~g~it~~~st~~h~~~v~~~~~~~~~-~ciyS~~ad~~v~~~~~~~~~~~~------------ 138 (541)
T KOG4547|consen 72 MLVLGTPQGSVLLYSVAGGEITAKLSTDKHYGNVNEILDAQRL-GCIYSVGADLKVVYILEKEKVIIR------------ 138 (541)
T ss_pred EEEeecCCccEEEEEecCCeEEEEEecCCCCCcceeeeccccc-CceEecCCceeEEEEecccceeee------------
Confidence 57788889999999999999887775 688999999998766 899999999999999988654332
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
.+......+.+++.+||+..++++ .+.|++||+++.+.+. .+.+|.++|.+
T Consensus 139 ---------------~~~~~~~~~~sl~is~D~~~l~~a---s~~ik~~~~~~kevv~-----------~ftgh~s~v~t 189 (541)
T KOG4547|consen 139 ---------------IWKEQKPLVSSLCISPDGKILLTA---SRQIKVLDIETKEVVI-----------TFTGHGSPVRT 189 (541)
T ss_pred ---------------eeccCCCccceEEEcCCCCEEEec---cceEEEEEccCceEEE-----------EecCCCcceEE
Confidence 444556689999999999998874 5899999999999887 58899999999
Q ss_pred EEeCCC-----CCEEEEE-ecCCeEEEEEccc
Q 010390 280 LSQDSN-----GVFLTAS-CMDHRIYLYNVLQ 305 (512)
Q Consensus 280 ~~~~~~-----~~~l~~~-~~dg~i~i~d~~~ 305 (512)
+.|-.+ |.+++++ ..+.-|.+|-+..
T Consensus 190 ~~f~~~~~g~~G~~vLssa~~~r~i~~w~v~~ 221 (541)
T KOG4547|consen 190 LSFTTLIDGIIGKYVLSSAAAERGITVWVVEK 221 (541)
T ss_pred EEEEEeccccccceeeeccccccceeEEEEEc
Confidence 999776 6666554 4566677887654
No 261
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.35 E-value=5.5e-10 Score=100.86 Aligned_cols=305 Identities=10% Similarity=0.085 Sum_probs=186.2
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC-
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD- 129 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d- 129 (512)
-++..+++ ||.|.+|++.... .|.+|.-.... .+.++. ...|..+.|+|.+.+|++=+..
T Consensus 33 ~p~~~~~~---SP~G~~l~~~~~~-~V~~~~g~~~~-------------~l~~~~--~~~V~~~~fSP~~kYL~tw~~~p 93 (561)
T COG5354 33 WPVAYVSE---SPLGTYLFSEHAA-GVECWGGPSKA-------------KLVRFR--HPDVKYLDFSPNEKYLVTWSREP 93 (561)
T ss_pred cchhheee---cCcchheehhhcc-ceEEccccchh-------------heeeee--cCCceecccCcccceeeeeccCC
Confidence 34555555 9999999998765 48899865432 133332 2579999999999999986543
Q ss_pred --------------CcEEEEeCCCCeeeecccCcCCC--EE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc-
Q 010390 130 --------------QTIKIWDAEKKKCTGALMGHTGS--IK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA- 191 (512)
Q Consensus 130 --------------g~i~iwd~~~~~~~~~~~~h~~~--v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~- 191 (512)
..+.+||..++..+..+.....+ .+ -+.|+-++ .++|=. ....+.++++ +.........
T Consensus 94 i~~pe~e~sp~~~~n~~~vwd~~sg~iv~sf~~~~q~~~~Wp~~k~s~~D-~y~ARv-v~~sl~i~e~-t~n~~~~p~~~ 170 (561)
T COG5354 94 IIEPEIEISPFTSKNNVFVWDIASGMIVFSFNGISQPYLGWPVLKFSIDD-KYVARV-VGSSLYIHEI-TDNIEEHPFKN 170 (561)
T ss_pred ccChhhccCCccccCceeEEeccCceeEeeccccCCcccccceeeeeecc-hhhhhh-ccCeEEEEec-CCccccCchhh
Confidence 34999999999999888776655 44 56787766 554443 2347899997 3322211000
Q ss_pred --cceeeeccccccc-ccc-----cc---------------cccceecccccccEEEEEEeecCCEEEEEee--------
Q 010390 192 --ESFVFSSAVVKGA-HLL-----SQ---------------SKRVSRRKAASMSITSVLYLKDEVSIATASA-------- 240 (512)
Q Consensus 192 --~~~~~~~~~~~~~-~~~-----~~---------------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~-------- 240 (512)
...+....+.+.+ +.. +. ...+....-....-..+.|++.|.++++-.-
T Consensus 171 lr~~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKs 250 (561)
T COG5354 171 LRPVGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKS 250 (561)
T ss_pred ccccceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccc
Confidence 0111111111110 000 00 0000000011112235667787877654321
Q ss_pred --cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE--ecCCeEEEEEcccCCCCceEeeee
Q 010390 241 --VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS--CMDHRIYLYNVLQLDKGPIQHFSG 316 (512)
Q Consensus 241 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~--~~dg~i~i~d~~~~~~~~~~~~~~ 316 (512)
....++++++....... .....++|...+|.|.++.+++. -.+-.+.++|++.. ....+..
T Consensus 251 yfgesnLyl~~~~e~~i~V------------~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~lr~N---l~~~~Pe 315 (561)
T COG5354 251 YFGESNLYLLRITERSIPV------------EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDLRGN---LRFYFPE 315 (561)
T ss_pred eeccceEEEEeecccccce------------eccccccceeeeecccCCceeEEecccccceeecccccc---eEEecCC
Confidence 12456777776433321 22556889999999988876654 47888999998652 2333332
Q ss_pred ceeceeEEEEEECCCCCEEEEecCC---CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe------CCCc
Q 010390 317 CRIESFYVKSEICPNASHILSGSSD---GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS------DDYT 387 (512)
Q Consensus 317 ~~~~~~~~~~~~s~~~~~l~~g~~d---g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~------~dg~ 387 (512)
.. -..+.|+|.+++++.++-| |.|.+||..........+.+- ..+-+.|+||+ +++.+.. .|..
T Consensus 316 ~~----rNT~~fsp~~r~il~agF~nl~gni~i~~~~~rf~~~~~~~~~--n~s~~~wspd~-qF~~~~~ts~k~~~Dn~ 388 (561)
T COG5354 316 QK----RNTIFFSPHERYILFAGFDNLQGNIEIFDPAGRFKVAGAFNGL--NTSYCDWSPDG-QFYDTDTTSEKLRVDNS 388 (561)
T ss_pred cc----cccccccCcccEEEEecCCccccceEEeccCCceEEEEEeecC--CceEeeccCCc-eEEEecCCCcccccCcc
Confidence 22 2237899999999887765 679999988765543344433 34556799999 6666553 4789
Q ss_pred EEEEeCCCCccc
Q 010390 388 VRLWSLENSRCS 399 (512)
Q Consensus 388 i~vwd~~~~~~~ 399 (512)
|.|||+.....-
T Consensus 389 i~l~~v~g~~~f 400 (561)
T COG5354 389 IKLWDVYGAKVF 400 (561)
T ss_pred eEEEEecCchhh
Confidence 999999876644
No 262
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=99.35 E-value=8.1e-12 Score=117.22 Aligned_cols=288 Identities=18% Similarity=0.301 Sum_probs=189.4
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC--CCcEEEEEEecCC---CEEE
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH--QNAIFDLCWIKED---TNIL 124 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~s~~~---~~l~ 124 (512)
.+++.++.. +|.|+-+|.++.-| +.+-|+..... +.+ +..| .-.|-.+.|+|.. ..++
T Consensus 24 ~~~~~a~si---~p~grdi~lAsr~g-l~i~dld~p~~------------ppr-~l~h~tpw~vad~qws~h~a~~~wiV 86 (1081)
T KOG0309|consen 24 DGGFNAVSI---NPSGRDIVLASRQG-LYIIDLDDPFT------------PPR-WLHHITPWQVADVQWSPHPAKPYWIV 86 (1081)
T ss_pred cCcccceee---ccccchhhhhhhcC-eEEEeccCCCC------------Cce-eeeccCcchhcceecccCCCCceeEE
Confidence 345678888 99999999988776 55667665421 111 1112 2346677888732 3455
Q ss_pred EEeCCCcEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccc
Q 010390 125 TASGDQTIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 125 s~~~dg~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
+.+ ...-.||++... ..-..+.+|...|+.+.|+|+.+..+++++.|-.+..||++.......
T Consensus 87 sts-~qkaiiwnlA~ss~~aIef~lhghsraitd~n~~~q~pdVlatcsvdt~vh~wd~rSp~~p~y------------- 152 (1081)
T KOG0309|consen 87 STS-NQKAIIWNLAKSSSNAIEFVLHGHSRAITDINFNPQHPDVLATCSVDTYVHAWDMRSPHRPFY------------- 152 (1081)
T ss_pred ecC-cchhhhhhhhcCCccceEEEEecCccceeccccCCCCCcceeeccccccceeeeccCCCccee-------------
Confidence 444 444568998543 334456789999999999999999999999999999999987643221
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
....-......++|+-....++++. ....|.+||++.+..+.. ...+|...|+.++
T Consensus 153 -------------s~~~w~s~asqVkwnyk~p~vlass-hg~~i~vwd~r~gs~pl~----------s~K~~vs~vn~~~ 208 (1081)
T KOG0309|consen 153 -------------STSSWRSAASQVKWNYKDPNVLASS-HGNDIFVWDLRKGSTPLC----------SLKGHVSSVNSID 208 (1081)
T ss_pred -------------eeecccccCceeeecccCcchhhhc-cCCceEEEeccCCCcceE----------EecccceeeehHH
Confidence 1222234566788887666666533 678899999998877654 3455667788888
Q ss_pred eCCC-CCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC--EEE--Ee-------cCCCCEEEEec
Q 010390 282 QDSN-GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS--HIL--SG-------SSDGNAYVWQV 349 (512)
Q Consensus 282 ~~~~-~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~--~l~--~g-------~~dg~i~iw~~ 349 (512)
|..- ...+.+.+.||+|+.||.............. ...+..-.+-|-|+ ++. .| ..+..-..|+.
T Consensus 209 fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~~~vtt---~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~ 285 (1081)
T KOG0309|consen 209 FNRFKYSEIMSSSNDGTVKFWDYSKSTTESKRTVTT---NFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV 285 (1081)
T ss_pred HhhhhhhhhcccCCCCceeeecccccccccceeccc---cCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc
Confidence 8653 3467888899999999986543332222211 12233344445332 221 11 11233344555
Q ss_pred CCCCCCCceeccccCCeEEEEeCCCC---------CCeEEEEeCCCcEEEEeCCC
Q 010390 350 NKPQADPIKLKSHDGEVTAVNWCPNE---------AGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 350 ~~~~~~~~~~~~h~~~v~~v~~~~~~---------~~~l~s~~~dg~i~vwd~~~ 395 (512)
.+...++..+.||++.|....|-..+ ...|+|-+.|..+++|-+.+
T Consensus 286 ~~~~~pVh~F~GH~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~~ 340 (1081)
T KOG0309|consen 286 FDLNTPVHTFVGHDDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPIDS 340 (1081)
T ss_pred ccCCcceeeecCcchHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeeccH
Confidence 55566678899999999887774322 25799999999999998875
No 263
>KOG2314 consensus Translation initiation factor 3, subunit b (eIF-3b) [Translation, ribosomal structure and biogenesis]
Probab=99.34 E-value=1.3e-09 Score=99.51 Aligned_cols=290 Identities=14% Similarity=0.196 Sum_probs=173.0
Q ss_pred ceEEEEEecCCCcEEEEeeC-----------CCcEEEEECCCCCCccccccccccccceecccc---CCCcEEEEEEecC
Q 010390 54 LAVSFCKTSKNSHIFAVSDE-----------DGYVSLFDSRRKLPSFACHRENAEKARISDWVA---HQNAIFDLCWIKE 119 (512)
Q Consensus 54 ~~v~~~~~s~~~~~latg~~-----------dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~---h~~~V~~l~~s~~ 119 (512)
..|.|+.|||+.+||+|=+. ...++|||+.++.. .+.+.. ....-.-..||.|
T Consensus 250 p~Vq~idfSP~EkYLVT~s~~p~~~~~~d~e~~~l~IWDI~tG~l-------------krsF~~~~~~~~~WP~frWS~D 316 (698)
T KOG2314|consen 250 PGVQFIDFSPNEKYLVTYSPEPIIVEEDDNEGQQLIIWDIATGLL-------------KRSFPVIKSPYLKWPIFRWSHD 316 (698)
T ss_pred CCceeeecCCccceEEEecCCccccCcccCCCceEEEEEccccch-------------hcceeccCCCccccceEEeccC
Confidence 35677777999999999432 24699999998854 222222 1122234679999
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
++++|--..+ .|.|++.....++..-.-.-..|....|+|.+ ++|| .|-..+.........
T Consensus 317 dKy~Arm~~~-sisIyEtpsf~lld~Kslki~gIr~FswsP~~-~llA---------Ywtpe~~~~parvtL-------- 377 (698)
T KOG2314|consen 317 DKYFARMTGN-SISIYETPSFMLLDKKSLKISGIRDFSWSPTS-NLLA---------YWTPETNNIPARVTL-------- 377 (698)
T ss_pred CceeEEeccc-eEEEEecCceeeecccccCCccccCcccCCCc-ceEE---------EEcccccCCcceEEE--------
Confidence 9999966654 59999876644433222234578888999975 5554 343333222111100
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEe---------ecCCeEEEEeccCccceecccCCCccccccc
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS---------AVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
...+....++...-++-.=..+.|-.+|.+|++-- +.-..+.|+.++...... ..
T Consensus 378 -----~evPs~~~iRt~nlfnVsDckLhWQk~gdyLcvkvdR~tK~~~~g~f~n~eIfrireKdIpv-----------e~ 441 (698)
T KOG2314|consen 378 -----MEVPSKREIRTKNLFNVSDCKLHWQKSGDYLCVKVDRHTKSKVKGQFSNLEIFRIREKDIPV-----------EV 441 (698)
T ss_pred -----EecCccceeeeccceeeeccEEEeccCCcEEEEEEEeeccccccceEeeEEEEEeeccCCCc-----------ee
Confidence 00001111122222222334456666777765422 112245666666655443 23
Q ss_pred cccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCC--ceEeeeeceeceeEEEEEECCCCCEEEEe---cCCC
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKG--PIQHFSGCRIESFYVKSEICPNASHILSG---SSDG 342 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~--~~~~~~~~~~~~~~~~~~~s~~~~~l~~g---~~dg 342 (512)
......|...+|.|.|..+++-+.+ .++.+|.+.+.... .+..+.. .....+.|+|.|++++.+ +..|
T Consensus 442 velke~vi~FaWEP~gdkF~vi~g~~~k~tvsfY~~e~~~~~~~lVk~~dk----~~~N~vfwsPkG~fvvva~l~s~~g 517 (698)
T KOG2314|consen 442 VELKESVIAFAWEPHGDKFAVISGNTVKNTVSFYAVETNIKKPSLVKELDK----KFANTVFWSPKGRFVVVAALVSRRG 517 (698)
T ss_pred eecchheeeeeeccCCCeEEEEEccccccceeEEEeecCCCchhhhhhhcc----cccceEEEcCCCcEEEEEEeccccc
Confidence 3444678999999999987766533 67889988642222 2233332 234568999999999765 4578
Q ss_pred CEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC------CCcEEEEeCCCCc
Q 010390 343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD------DYTVRLWSLENSR 397 (512)
Q Consensus 343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~------dg~i~vwd~~~~~ 397 (512)
.+.++|+............| ...+.+.|.|.| +++++++. |.--++|+++...
T Consensus 518 ~l~F~D~~~a~~k~~~~~eh-~~at~veWDPtG-RYvvT~ss~wrhk~d~GYri~tfqGrl 576 (698)
T KOG2314|consen 518 DLEFYDTDYADLKDTASPEH-FAATEVEWDPTG-RYVVTSSSSWRHKVDNGYRIFTFQGRL 576 (698)
T ss_pred ceEEEecchhhhhhccCccc-cccccceECCCC-CEEEEeeehhhhccccceEEEEeecHH
Confidence 89999997533321222223 356789999999 89998874 5556788887544
No 264
>PRK01029 tolB translocation protein TolB; Provisional
Probab=99.34 E-value=3.5e-10 Score=107.95 Aligned_cols=203 Identities=14% Similarity=0.095 Sum_probs=119.3
Q ss_pred CCcceEEEEEecCCCcEE---EEeeCCC--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE
Q 010390 51 TPPLAVSFCKTSKNSHIF---AVSDEDG--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT 125 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~l---atg~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s 125 (512)
..+.+-.| ||||+.+ ++...+| .|.+.++.++.. ..+..+ .+.....+|+|||+.|+.
T Consensus 185 ~~~~sP~w---SPDG~~~~~~y~S~~~g~~~I~~~~l~~g~~-----------~~lt~~---~g~~~~p~wSPDG~~Laf 247 (428)
T PRK01029 185 SLSITPTW---MHIGSGFPYLYVSYKLGVPKIFLGSLENPAG-----------KKILAL---QGNQLMPTFSPRKKLLAF 247 (428)
T ss_pred CCcccceE---ccCCCceEEEEEEccCCCceEEEEECCCCCc-----------eEeecC---CCCccceEECCCCCEEEE
Confidence 33444556 9999742 3444444 477778876542 223333 344556899999999986
Q ss_pred EeC-CC----cEEEEeCCCC---eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 126 ASG-DQ----TIKIWDAEKK---KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 126 ~~~-dg----~i~iwd~~~~---~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
.+. +| .+.+|++..+ +.......+.......+|+|++..++++...+|...+|.+......
T Consensus 248 ~s~~~g~~di~~~~~~~~~g~~g~~~~lt~~~~~~~~~p~wSPDG~~Laf~s~~~g~~~ly~~~~~~~g----------- 316 (428)
T PRK01029 248 ISDRYGNPDLFIQSFSLETGAIGKPRRLLNEAFGTQGNPSFSPDGTRLVFVSNKDGRPRIYIMQIDPEG----------- 316 (428)
T ss_pred EECCCCCcceeEEEeecccCCCCcceEeecCCCCCcCCeEECCCCCEEEEEECCCCCceEEEEECcccc-----------
Confidence 543 22 3444777653 3333333233344678999999444444445676666644211000
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEEEeccCccceecccCCCcccccccccccc
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
.....+......+....|+|+|+.++.++..+ ..|.+||+.+++.... .....
T Consensus 317 -------------~~~~~lt~~~~~~~~p~wSPDG~~Laf~~~~~g~~~I~v~dl~~g~~~~L------------t~~~~ 371 (428)
T PRK01029 317 -------------QSPRLLTKKYRNSSCPAWSPDGKKIAFCSVIKGVRQICVYDLATGRDYQL------------TTSPE 371 (428)
T ss_pred -------------cceEEeccCCCCccceeECCCCCEEEEEEcCCCCcEEEEEECCCCCeEEc------------cCCCC
Confidence 00011112234567789999999998876443 3689999988765421 11123
Q ss_pred CeeEEEeCCCCCEEEEEec---CCeEEEEEcccC
Q 010390 276 GISSLSQDSNGVFLTASCM---DHRIYLYNVLQL 306 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~ 306 (512)
.+....|+|||+.|+.... ...|.++|+...
T Consensus 372 ~~~~p~wSpDG~~L~f~~~~~g~~~L~~vdl~~g 405 (428)
T PRK01029 372 NKESPSWAIDSLHLVYSAGNSNESELYLISLITK 405 (428)
T ss_pred CccceEECCCCCEEEEEECCCCCceEEEEECCCC
Confidence 4567899999998875443 356888887654
No 265
>COG5170 CDC55 Serine/threonine protein phosphatase 2A, regulatory subunit [Signal transduction mechanisms]
Probab=99.32 E-value=9.3e-11 Score=99.13 Aligned_cols=280 Identities=13% Similarity=0.157 Sum_probs=179.3
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----eeecccCcC------------CCEEEEEeeCCC-CCeEEE
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----CTGALMGHT------------GSIKSLCSHPTN-SDILVS 168 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~h~------------~~v~~l~~~~~~-~~~l~s 168 (512)
....|+++.|...|.+|++|...|.|.++.-+... ....+++|. ..|+.+.|..++ ...++.
T Consensus 25 ead~ItaVefd~tg~YlatGDkgGRVvlfer~~s~~ceykf~teFQshe~EFDYLkSleieEKin~I~w~~~t~r~hFLl 104 (460)
T COG5170 25 EADKITAVEFDETGLYLATGDKGGRVVLFEREKSYGCEYKFFTEFQSHELEFDYLKSLEIEEKINAIEWFDDTGRNHFLL 104 (460)
T ss_pred ccceeeEEEeccccceEeecCCCceEEEeecccccccchhhhhhhcccccchhhhhhccHHHHhhheeeecCCCcceEEE
Confidence 34679999999999999999999999999754432 223355553 357888886543 456777
Q ss_pred EeCCCcEEEEeCCCCCCCCCccccceeeecccccccc-----------------cccccccceecccccccEEEEEEeec
Q 010390 169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH-----------------LLSQSKRVSRRKAASMSITSVLYLKD 231 (512)
Q Consensus 169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~~v~~~~~~~~ 231 (512)
.+.|.+|++|.+............ ...+.....++. .............|...+.++.++.+
T Consensus 105 stNdktiKlWKiyeknlk~va~nn-ls~~~~~~~~g~~~s~~~l~lprls~hd~iiaa~p~rvyaNaH~yhiNSiS~NsD 183 (460)
T COG5170 105 STNDKTIKLWKIYEKNLKVVAENN-LSDSFHSPMGGPLTSTKELLLPRLSEHDEIIAAKPCRVYANAHPYHINSISFNSD 183 (460)
T ss_pred ecCCceeeeeeeecccchhhhccc-cccccccccCCCcCCHHHhhcccccccceEEEeccceeccccceeEeeeeeecCc
Confidence 788999999999866433221110 000000000100 01111111123578888999999999
Q ss_pred CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcccCCC--
Q 010390 232 EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQLDK-- 308 (512)
Q Consensus 232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~~~~-- 308 (512)
...++++ +|-.|.+|++.-...........+. .+.....-|++..|+|. ...+.-++..|.|++-|+++...
T Consensus 184 ~et~lSa--DdLrINLWnl~i~D~sFnIVDiKP~---nmeeLteVItSaeFhp~~cn~fmYSsSkG~Ikl~DlRq~alcd 258 (460)
T COG5170 184 KETLLSA--DDLRINLWNLEIIDGSFNIVDIKPH---NMEELTEVITSAEFHPEMCNVFMYSSSKGEIKLNDLRQSALCD 258 (460)
T ss_pred hheeeec--cceeeeeccccccCCceEEEeccCc---cHHHHHHHHhhcccCHhHcceEEEecCCCcEEehhhhhhhhcc
Confidence 9988864 6889999998755433322211110 23333455888999985 45666777899999999974211
Q ss_pred --CceEe--eee------ceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc------------CCe
Q 010390 309 --GPIQH--FSG------CRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD------------GEV 366 (512)
Q Consensus 309 --~~~~~--~~~------~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~------------~~v 366 (512)
..+.. +.+ ......+..+.|+++|+++++-+. -+|+|||++..+.++.+..-|. +.|
T Consensus 259 n~~klfe~~~D~v~~~ff~eivsSISD~kFs~ngryIlsRdy-ltvkiwDvnm~k~pikTi~~h~~l~~~l~d~YEnDai 337 (460)
T COG5170 259 NSKKLFELTIDGVDVDFFEEIVSSISDFKFSDNGRYILSRDY-LTVKIWDVNMAKNPIKTIPMHCDLMDELNDVYENDAI 337 (460)
T ss_pred CchhhhhhccCcccchhHHHHhhhhcceEEcCCCcEEEEecc-ceEEEEecccccCCceeechHHHHHHHHHhhhhccce
Confidence 11111 111 112234677899999999998764 5699999998887776664442 233
Q ss_pred ---EEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 367 ---TAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 367 ---~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
..+.|+-|. ..+++|+..+..-++-..
T Consensus 338 fdkFeisfSgd~-~~v~sgsy~NNfgiyp~~ 367 (460)
T COG5170 338 FDKFEISFSGDD-KHVLSGSYSNNFGIYPTD 367 (460)
T ss_pred eeeEEEEecCCc-ccccccccccceeeeccc
Confidence 346788887 788899888877777644
No 266
>PRK00178 tolB translocation protein TolB; Provisional
Probab=99.29 E-value=1.4e-09 Score=105.18 Aligned_cols=215 Identities=12% Similarity=0.071 Sum_probs=131.4
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.|.++|.+.+. ...+..+...+....|+|++ +.|+..+.+ ..|.+||+.+++....
T Consensus 180 ~l~~~d~~g~~-~~~l~~~~~~~~~p~wSpDG-~~la~~s~~~~~~~l~~~~l~~g~~~~l------------------- 238 (430)
T PRK00178 180 TLQRSDYDGAR-AVTLLQSREPILSPRWSPDG-KRIAYVSFEQKRPRIFVQNLDTGRREQI------------------- 238 (430)
T ss_pred EEEEECCCCCC-ceEEecCCCceeeeeECCCC-CEEEEEEcCCCCCEEEEEECCCCCEEEc-------------------
Confidence 47788876554 34454567789999999998 666555433 3688899876543211
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
....+......|+|+|+.++.+...+| .|++||+.++.... +..+........|+||
T Consensus 239 ---------~~~~g~~~~~~~SpDG~~la~~~~~~g~~~Iy~~d~~~~~~~~------------lt~~~~~~~~~~~spD 297 (430)
T PRK00178 239 ---------TNFEGLNGAPAWSPDGSKLAFVLSKDGNPEIYVMDLASRQLSR------------VTNHPAIDTEPFWGKD 297 (430)
T ss_pred ---------cCCCCCcCCeEECCCCCEEEEEEccCCCceEEEEECCCCCeEE------------cccCCCCcCCeEECCC
Confidence 111223446889999999887654555 68888988765432 1222233556789999
Q ss_pred CCEEEEEec-CC--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC-C--CEEEEecCCCCCCCcee
Q 010390 286 GVFLTASCM-DH--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD-G--NAYVWQVNKPQADPIKL 359 (512)
Q Consensus 286 ~~~l~~~~~-dg--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d-g--~i~iw~~~~~~~~~~~~ 359 (512)
|+.|+..+. +| .|+++|+...+...+ ...+ .......|+|+|++|+..+.+ + .|.+||+.+++.. .+
T Consensus 298 g~~i~f~s~~~g~~~iy~~d~~~g~~~~l-t~~~----~~~~~~~~Spdg~~i~~~~~~~~~~~l~~~dl~tg~~~--~l 370 (430)
T PRK00178 298 GRTLYFTSDRGGKPQIYKVNVNGGRAERV-TFVG----NYNARPRLSADGKTLVMVHRQDGNFHVAAQDLQRGSVR--IL 370 (430)
T ss_pred CCEEEEEECCCCCceEEEEECCCCCEEEe-ecCC----CCccceEECCCCCEEEEEEccCCceEEEEEECCCCCEE--Ec
Confidence 998776653 33 577777654332211 1111 112346899999999776543 3 4888898876542 22
Q ss_pred ccccCCeEEEEeCCCCCCeEEEEeC-CC--cEEEEeCCCC
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTSSD-DY--TVRLWSLENS 396 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~~~-dg--~i~vwd~~~~ 396 (512)
. +........|+|+| +.++..+. +| .|.++++..+
T Consensus 371 t-~~~~~~~p~~spdg-~~i~~~~~~~g~~~l~~~~~~g~ 408 (430)
T PRK00178 371 T-DTSLDESPSVAPNG-TMLIYATRQQGRGVLMLVSINGR 408 (430)
T ss_pred c-CCCCCCCceECCCC-CEEEEEEecCCceEEEEEECCCC
Confidence 2 11222356899999 56655543 33 4666676543
No 267
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.28 E-value=1.1e-08 Score=105.57 Aligned_cols=253 Identities=13% Similarity=0.195 Sum_probs=157.1
Q ss_pred CCCcEEEEEEecCCCEEEEEeC---C---CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC---CCcEEE
Q 010390 107 HQNAIFDLCWIKEDTNILTASG---D---QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR---DGSFAI 177 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~---d---g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~---dg~i~v 177 (512)
+.+.-..|+|-.||.++|+.+. . ..++||+- .|+...+-..-.+--.+++|.|.| ++||+... ...|.+
T Consensus 208 ~dd~~~~ISWRGDG~yFAVss~~~~~~~~R~iRVy~R-eG~L~stSE~v~gLe~~l~WrPsG-~lIA~~q~~~~~~~VvF 285 (928)
T PF04762_consen 208 WDDGRVRISWRGDGEYFAVSSVEPETGSRRVIRVYSR-EGELQSTSEPVDGLEGALSWRPSG-NLIASSQRLPDRHDVVF 285 (928)
T ss_pred cCCCceEEEECCCCcEEEEEEEEcCCCceeEEEEECC-CceEEeccccCCCccCCccCCCCC-CEEEEEEEcCCCcEEEE
Confidence 4456678999999999997664 2 57999995 476655555444445678999998 88888765 345666
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
|.-+..+.- ....+.......|..+.|++++..|++.- ...|.+|-..+..-..
T Consensus 286 fErNGLrhg------------------------eF~l~~~~~~~~v~~l~Wn~ds~iLAv~~--~~~vqLWt~~NYHWYL 339 (928)
T PF04762_consen 286 FERNGLRHG------------------------EFTLRFDPEEEKVIELAWNSDSEILAVWL--EDRVQLWTRSNYHWYL 339 (928)
T ss_pred EecCCcEee------------------------eEecCCCCCCceeeEEEECCCCCEEEEEe--cCCceEEEeeCCEEEE
Confidence 664422110 00111223456789999999999999854 3349999998876544
Q ss_pred cccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEcc----cCC------CCceEeee-----------
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVL----QLD------KGPIQHFS----------- 315 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~----~~~------~~~~~~~~----------- 315 (512)
++... ......+..+.|+|. ...|...+.+|.+..+++. ... ...+....
T Consensus 340 Kqei~--------~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~~~~~~~~~v~~s~~~~~~D~g~vaVIDG~~lllTpf~~ 411 (928)
T PF04762_consen 340 KQEIR--------FSSSESVNFVKWDPEKPLRLHVLTSNGQYEIYDFAWDVSRSPGSSPNDNGTVAVIDGNKLLLTPFRR 411 (928)
T ss_pred EEEEE--------ccCCCCCCceEECCCCCCEEEEEecCCcEEEEEEEEEEEecCCCCccCceEEEEEeCCeEEEecccc
Confidence 43211 111223445889884 4456666666766655531 110 00111111
Q ss_pred ----------eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-------Ccee----------ccccCCeEE
Q 010390 316 ----------GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-------PIKL----------KSHDGEVTA 368 (512)
Q Consensus 316 ----------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-------~~~~----------~~h~~~v~~ 368 (512)
.......+..++|++++..+++-..||.|.+|........ ...+ ..-...+..
T Consensus 412 a~VPPPMs~~~l~~~~~v~~vaf~~~~~~~avl~~d~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 491 (928)
T PF04762_consen 412 AVVPPPMSSYELELPSPVNDVAFSPSNSRFAVLTSDGSLSIYEWDLKNMWSVKPPKLLSSISLDSMDISDSELPLGSLRQ 491 (928)
T ss_pred cCCCchHhceEEcCCCCcEEEEEeCCCCeEEEEECCCCEEEEEecCCCcccccCcchhhhcccccccccccccccccEEE
Confidence 1123456788999999988999999999999985443211 0011 112346788
Q ss_pred EEeCCCCCCeEEEEeCC---CcEEEEeCCCC
Q 010390 369 VNWCPNEAGKIVTSSDD---YTVRLWSLENS 396 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~d---g~i~vwd~~~~ 396 (512)
++|..++ .+++....+ ..+.++++...
T Consensus 492 ~~~~~~~-~~~~~~~~~~~~~~i~~~~~~~~ 521 (928)
T PF04762_consen 492 LAWLNDD-TLLVLSDSDSNQSKIVLVDIDDS 521 (928)
T ss_pred EEEeCCC-EEEEEEecCcccceEEEEEeccC
Confidence 8998877 555555544 68888888544
No 268
>PRK04792 tolB translocation protein TolB; Provisional
Probab=99.27 E-value=8e-10 Score=106.41 Aligned_cols=195 Identities=13% Similarity=0.092 Sum_probs=118.1
Q ss_pred cCCcceEEEEEecCCCcEEEEeeC-CC--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDE-DG--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT- 125 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~-dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s- 125 (512)
..++.+..| ||||+.||..+. ++ .|.+||+.++.. ..+..+. +......|+|||+.|+.
T Consensus 217 ~~~~~~p~w---SPDG~~La~~s~~~g~~~L~~~dl~tg~~-----------~~lt~~~---g~~~~~~wSPDG~~La~~ 279 (448)
T PRK04792 217 PEPLMSPAW---SPDGRKLAYVSFENRKAEIFVQDIYTQVR-----------EKVTSFP---GINGAPRFSPDGKKLALV 279 (448)
T ss_pred CCcccCceE---CCCCCEEEEEEecCCCcEEEEEECCCCCe-----------EEecCCC---CCcCCeeECCCCCEEEEE
Confidence 445667777 999998887643 33 588889876532 1222233 23346899999998874
Q ss_pred EeCCCc--EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCc--EEEEeCCCCCCCCCccccceeeecccc
Q 010390 126 ASGDQT--IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGS--FAIWDLRCKSSPKSNCAESFVFSSAVV 201 (512)
Q Consensus 126 ~~~dg~--i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~--i~vwd~~~~~~~~~~~~~~~~~~~~~~ 201 (512)
.+.+|. |++||+.+++... +..+.......+|+|++..++++...++. |.++|+.+++...
T Consensus 280 ~~~~g~~~Iy~~dl~tg~~~~-lt~~~~~~~~p~wSpDG~~I~f~s~~~g~~~Iy~~dl~~g~~~~-------------- 344 (448)
T PRK04792 280 LSKDGQPEIYVVDIATKALTR-ITRHRAIDTEPSWHPDGKSLIFTSERGGKPQIYRVNLASGKVSR-------------- 344 (448)
T ss_pred EeCCCCeEEEEEECCCCCeEE-CccCCCCccceEECCCCCEEEEEECCCCCceEEEEECCCCCEEE--------------
Confidence 555664 7788988776543 44455566778999998444455544554 5555665443111
Q ss_pred cccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 202 KGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 202 ~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
+...........|+|+++.++.++..++ .|.++|+.++...... .. .....
T Consensus 345 --------------Lt~~g~~~~~~~~SpDG~~l~~~~~~~g~~~I~~~dl~~g~~~~lt------------~~-~~d~~ 397 (448)
T PRK04792 345 --------------LTFEGEQNLGGSITPDGRSMIMVNRTNGKFNIARQDLETGAMQVLT------------ST-RLDES 397 (448)
T ss_pred --------------EecCCCCCcCeeECCCCCEEEEEEecCCceEEEEEECCCCCeEEcc------------CC-CCCCC
Confidence 0001112234689999999988765555 4555677665432211 00 11223
Q ss_pred EEeCCCCCEEEEEecC-C--eEEEEEc
Q 010390 280 LSQDSNGVFLTASCMD-H--RIYLYNV 303 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~d-g--~i~i~d~ 303 (512)
..|+|||+.|+....+ + .+.+++.
T Consensus 398 ps~spdG~~I~~~~~~~g~~~l~~~~~ 424 (448)
T PRK04792 398 PSVAPNGTMVIYSTTYQGKQVLAAVSI 424 (448)
T ss_pred ceECCCCCEEEEEEecCCceEEEEEEC
Confidence 4799999988766543 3 3666665
No 269
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=99.26 E-value=5.5e-11 Score=108.18 Aligned_cols=298 Identities=15% Similarity=0.186 Sum_probs=184.3
Q ss_pred eeeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 39 IGAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 39 ~~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
...-+..+.||+..|.++.. -.+.+-+++++.|.+|++|.++...... .......+++.|+.+|.++-|..
T Consensus 724 ~~irL~nf~GH~~~iRai~A---idNENSFiSASkDKTVKLWSik~EgD~~------~tsaCQfTY~aHkk~i~~igfL~ 794 (1034)
T KOG4190|consen 724 DHIRLCNFTGHQEKIRAIAA---IDNENSFISASKDKTVKLWSIKPEGDEI------GTSACQFTYQAHKKPIHDIGFLA 794 (1034)
T ss_pred ceeeeecccCcHHHhHHHHh---cccccceeeccCCceEEEEEeccccCcc------ccceeeeEhhhccCcccceeeee
Confidence 34556788999999999988 5677889999999999999987532111 11234677889999999999999
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCC-CCCeEEEE-eCCCcEEEEeCCCCCCCCCccccce
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPT-NSDILVSG-SRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~-~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
+.++++++ ||-|.+||.--++++..... ..+.+..+...+. +..++++| +...+|+++|.+..+-.....
T Consensus 795 ~lr~i~Sc--D~giHlWDPFigr~Laq~~dapk~~a~~~ikcl~nv~~~iliAgcsaeSTVKl~DaRsce~~~E~k---- 868 (1034)
T KOG4190|consen 795 DLRSIASC--DGGIHLWDPFIGRLLAQMEDAPKEGAGGNIKCLENVDRHILIAGCSAESTVKLFDARSCEWTCELK---- 868 (1034)
T ss_pred ccceeeec--cCcceeecccccchhHhhhcCcccCCCceeEecccCcchheeeeccchhhheeeecccccceeeEE----
Confidence 98888876 78899999888877654421 1223333333333 22444444 778899999998765432211
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
+....+....+.+++..+.|+.+++ +-.+|.|.+.|.++++.+..-.. ..
T Consensus 869 ------------------Vcna~~Pna~~R~iaVa~~GN~lAa-~LSnGci~~LDaR~G~vINswrp-----------me 918 (1034)
T KOG4190|consen 869 ------------------VCNAPGPNALTRAIAVADKGNKLAA-ALSNGCIAILDARNGKVINSWRP-----------ME 918 (1034)
T ss_pred ------------------eccCCCCchheeEEEeccCcchhhH-HhcCCcEEEEecCCCceeccCCc-----------cc
Confidence 1111233457889999999999987 44699999999999886542111 00
Q ss_pred cCeeEEEeCCCCCEEEEEecCCeEEE-EEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEEecCCCCEEEEecCCC
Q 010390 275 HGISSLSQDSNGVFLTASCMDHRIYL-YNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~dg~i~i-~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
-....++ .|..+.|+....|.++.+ |-..++ +..+...+...+ ..| -.-|.-|++......+.+|.-...
T Consensus 919 cdllqla-apsdq~L~~saldHslaVnWhaldg----imh~q~kpppep---ahflqsvgpSLV~a~~Gn~lgVYad~a~ 990 (1034)
T KOG4190|consen 919 CDLLQLA-APSDQALAQSALDHSLAVNWHALDG----IMHLQDKPPPEP---AHFLQSVGPSLVTAQNGNILGVYADSAE 990 (1034)
T ss_pred chhhhhc-CchhHHHHhhcccceeEeeehhcCC----eeeeccCCCCcc---hhhhhccCceeEEeccCcEEEEEecchh
Confidence 1111111 244456666667777777 654221 111111100000 000 012455677766667777743211
Q ss_pred CC---CC--ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390 353 QA---DP--IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 353 ~~---~~--~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 390 (512)
.. .+ .......+..++++.-|-+ .-++.|...|.|.+
T Consensus 991 ~ha~stitKiR~d~f~G~lTala~LPLN-~afLaGne~G~IaL 1032 (1034)
T KOG4190|consen 991 LHAESTITKIRPDEFPGTLTALAPLPLN-CAFLAGNEHGAIAL 1032 (1034)
T ss_pred hhhhhhhccccccccCCccceeeecccc-chhhccCCCCceee
Confidence 00 00 1112335678888888887 67778888888865
No 270
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.21 E-value=1.3e-08 Score=107.24 Aligned_cols=280 Identities=12% Similarity=0.087 Sum_probs=164.1
Q ss_pred ceEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceec-cccCCCcEEEEEEecCCCEEEEEe-CCC
Q 010390 54 LAVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISD-WVAHQNAIFDLCWIKEDTNILTAS-GDQ 130 (512)
Q Consensus 54 ~~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~h~~~V~~l~~s~~~~~l~s~~-~dg 130 (512)
..|++ ++ ++.++++-..++.|++||............. .....-.. -.++-.....+++.+++..|+.+. ..+
T Consensus 571 ~gvav---d~~~g~lyVaDs~n~rI~v~d~~G~~i~~ig~~g-~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~ 646 (1057)
T PLN02919 571 GKLAI---DLLNNRLFISDSNHNRIVVTDLDGNFIVQIGSTG-EEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENH 646 (1057)
T ss_pred ceEEE---ECCCCeEEEEECCCCeEEEEeCCCCEEEEEccCC-CcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCc
Confidence 35666 65 4667777778889999998654211000000 00000000 011223467899999888766554 457
Q ss_pred cEEEEeCCCCeeeecccC----------c-------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 131 TIKIWDAEKKKCTGALMG----------H-------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~----------h-------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
.|+++|+.++.. .++.+ . -...+.++++|+++.++++.+.++.|++||..++...... .
T Consensus 647 ~Ir~id~~~~~V-~tlag~G~~g~~~~gg~~~~~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~~~~-G-- 722 (1057)
T PLN02919 647 ALREIDFVNETV-RTLAGNGTKGSDYQGGKKGTSQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTRVFS-G-- 722 (1057)
T ss_pred eEEEEecCCCEE-EEEeccCcccCCCCCChhhhHhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEEEEe-c--
Confidence 799999877643 22211 0 1134678999966578888888899999998765321100 0
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceeccc-CCCc-cccccc-
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQA-WPHA-ESSSAK- 270 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~-~~~~-~~~~~~- 270 (512)
.+....... .......-.....++++|++..++++...++.|++||+.++....... .+.. ......
T Consensus 723 ---------~G~~~~~~g-~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG 792 (1057)
T PLN02919 723 ---------DGYERNLNG-SSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFG 792 (1057)
T ss_pred ---------CCccccCCC-CccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCccccccc
Confidence 000000000 000011123567899999999888878788999999998765321110 0000 000000
Q ss_pred -------cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece------------eceeEEEEEECCC
Q 010390 271 -------ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR------------IESFYVKSEICPN 331 (512)
Q Consensus 271 -------~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~------------~~~~~~~~~~s~~ 331 (512)
.........++++++|.++++-..++.|++||..+.. +..+.+.. .-.....++++++
T Consensus 793 ~~dG~g~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~---v~tiaG~G~~G~~dG~~~~a~l~~P~GIavd~d 869 (1057)
T PLN02919 793 DHDGVGSEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKR---VTTLAGTGKAGFKDGKALKAQLSEPAGLALGEN 869 (1057)
T ss_pred CCCCchhhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCe---EEEEeccCCcCCCCCcccccccCCceEEEEeCC
Confidence 0111235689999999988888889999999985432 11111110 0123556899999
Q ss_pred CCEEEEecCCCCEEEEecCCCCC
Q 010390 332 ASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 332 ~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
|+++++-+.++.|++||+.++..
T Consensus 870 G~lyVaDt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 870 GRLFVADTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred CCEEEEECCCCEEEEEECCCCcc
Confidence 99999989999999999988654
No 271
>KOG4547 consensus WD40 repeat-containing protein [General function prediction only]
Probab=99.20 E-value=3.8e-10 Score=103.89 Aligned_cols=210 Identities=11% Similarity=0.138 Sum_probs=142.5
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEE---eecCCEEEEE
Q 010390 162 NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY---LKDEVSIATA 238 (512)
Q Consensus 162 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~---~~~~~~l~~~ 238 (512)
...++|....||.+++||...++....+................+..... .....++.+ ...+..+++-
T Consensus 4 ~~~~~A~~~~~g~l~iw~t~~~~~~~e~~p~~~~s~t~~~~~w~L~~~~s--------~~k~~~~~~~~~~s~~t~~lvl 75 (541)
T KOG4547|consen 4 ALDYFALSTGDGRLRIWDTAKNQLQQEFAPIASLSGTCTYTKWGLSADYS--------PMKWLSLEKAKKASLDTSMLVL 75 (541)
T ss_pred hhheEeecCCCCeEEEEEccCceeeeeeccchhccCcceeEEEEEEeccc--------hHHHHhHHHHhhccCCceEEEe
Confidence 34789999999999999998776554332211111000000000000000 000111111 0123455666
Q ss_pred eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390 239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR 318 (512)
Q Consensus 239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 318 (512)
|...|.|.+|+...++..... .-..|.+.|.++.++.+-..|.+++.|+.+..|+.... ..+......
T Consensus 76 gt~~g~v~~ys~~~g~it~~~---------st~~h~~~v~~~~~~~~~~ciyS~~ad~~v~~~~~~~~--~~~~~~~~~- 143 (541)
T KOG4547|consen 76 GTPQGSVLLYSVAGGEITAKL---------STDKHYGNVNEILDAQRLGCIYSVGADLKVVYILEKEK--VIIRIWKEQ- 143 (541)
T ss_pred ecCCccEEEEEecCCeEEEEE---------ecCCCCCcceeeecccccCceEecCCceeEEEEecccc--eeeeeeccC-
Confidence 888999999999998877654 35678889999999999999999999999999997552 223333322
Q ss_pred eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC-----CCCeEEEEeCCCcEEEEeC
Q 010390 319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN-----EAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~-----~~~~l~s~~~dg~i~vwd~ 393 (512)
...+.+++++||+..+++++ +.|.+||+++.+. +..+.+|.++|+++.|.-+ |..+|.+...+.-+.+|-+
T Consensus 144 -~~~~~sl~is~D~~~l~~as--~~ik~~~~~~kev-v~~ftgh~s~v~t~~f~~~~~g~~G~~vLssa~~~r~i~~w~v 219 (541)
T KOG4547|consen 144 -KPLVSSLCISPDGKILLTAS--RQIKVLDIETKEV-VITFTGHGSPVRTLSFTTLIDGIIGKYVLSSAAAERGITVWVV 219 (541)
T ss_pred -CCccceEEEcCCCCEEEecc--ceEEEEEccCceE-EEEecCCCcceEEEEEEEeccccccceeeeccccccceeEEEE
Confidence 23356789999999999986 6799999999876 5789999999999999876 5345666667778889987
Q ss_pred CC
Q 010390 394 EN 395 (512)
Q Consensus 394 ~~ 395 (512)
+.
T Consensus 220 ~~ 221 (541)
T KOG4547|consen 220 EK 221 (541)
T ss_pred Ec
Confidence 66
No 272
>KOG2041 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=5.1e-10 Score=105.13 Aligned_cols=236 Identities=13% Similarity=0.104 Sum_probs=164.9
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe---------------eeecccCcCCCEEEEEeeCCCCCeEEEEeCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK---------------CTGALMGHTGSIKSLCSHPTNSDILVSGSRD 172 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~---------------~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d 172 (512)
.....++.|+....+|+.|+.||.++|..+.+.. .-+++.+|+..|.-+.|+... +.|-+...+
T Consensus 14 nvkL~c~~WNke~gyIAcgG~dGlLKVlKl~t~t~d~~~~glaa~snLsmNQtLeGH~~sV~vvTWNe~~-QKLTtSDt~ 92 (1189)
T KOG2041|consen 14 NVKLHCAEWNKESGYIACGGADGLLKVLKLGTDTTDLNKSGLAAASNLSMNQTLEGHNASVMVVTWNENN-QKLTTSDTS 92 (1189)
T ss_pred CceEEEEEEcccCCeEEeccccceeEEEEccccCCcccccccccccccchhhhhccCcceEEEEEecccc-ccccccCCC
Confidence 3567899999999999999999999999876532 124678999999999999876 889999999
Q ss_pred CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390 173 GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN 252 (512)
Q Consensus 173 g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~ 252 (512)
|.|.+|-+-.+.-.... ......+-|.+++|+.+|..+..+- .||.|.+=.++.
T Consensus 93 GlIiVWmlykgsW~EEM-------------------------iNnRnKSvV~SmsWn~dG~kIcIvY-eDGavIVGsvdG 146 (1189)
T KOG2041|consen 93 GLIIVWMLYKGSWCEEM-------------------------INNRNKSVVVSMSWNLDGTKICIVY-EDGAVIVGSVDG 146 (1189)
T ss_pred ceEEEEeeecccHHHHH-------------------------hhCcCccEEEEEEEcCCCcEEEEEE-ccCCEEEEeecc
Confidence 99999988755422111 1112245789999999999988754 799888877665
Q ss_pred ccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCC-----CCceEeeeece--eceeEEE
Q 010390 253 LKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLD-----KGPIQHFSGCR--IESFYVK 325 (512)
Q Consensus 253 ~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~-----~~~~~~~~~~~--~~~~~~~ 325 (512)
.+.--. .........+.|++|.+.++.+-.+|.+.+||....- ........+.. ....+-.
T Consensus 147 NRIwgK------------eLkg~~l~hv~ws~D~~~~Lf~~ange~hlydnqgnF~~Kl~~~c~Vn~tg~~s~~~~kia~ 214 (1189)
T KOG2041|consen 147 NRIWGK------------ELKGQLLAHVLWSEDLEQALFKKANGETHLYDNQGNFERKLEKDCEVNGTGIFSNFPTKIAE 214 (1189)
T ss_pred ceecch------------hcchheccceeecccHHHHHhhhcCCcEEEecccccHHHhhhhceEEeeeeeecCCCccccc
Confidence 443211 1111224578899999999888899999999964311 11111111100 0001112
Q ss_pred EEE--------CCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 326 SEI--------CPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 326 ~~~--------s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
+.| -|+...|+.+-.+|.+.|..-.+...+...-.+ ..|..+.|+++| ..|+.+|.|
T Consensus 215 i~w~~g~~~~v~pdrP~lavcy~nGr~QiMR~eND~~Pvv~dtg--m~~vgakWnh~G-~vLAvcG~~ 279 (1189)
T KOG2041|consen 215 IEWNTGPYQPVPPDRPRLAVCYANGRMQIMRSENDPEPVVVDTG--MKIVGAKWNHNG-AVLAVCGND 279 (1189)
T ss_pred eeeccCccccCCCCCCEEEEEEcCceehhhhhcCCCCCeEEecc--cEeecceecCCC-cEEEEccCc
Confidence 222 257888999999999999876666554333333 678999999999 899998865
No 273
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.19 E-value=1.5e-08 Score=96.47 Aligned_cols=232 Identities=14% Similarity=0.107 Sum_probs=145.9
Q ss_pred ecCCccCCcceEEEEEe-------cCC--CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390 45 EHHGEETPPLAVSFCKT-------SKN--SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~-------s~~--~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 115 (512)
...-|...|+.|.|.+. ||. .-+||++...|.|.|||...... +..+..|..+|..++
T Consensus 50 sie~h~s~V~~VrWap~~~p~~llS~~~~~lliAsaD~~GrIil~d~~~~s~-------------~~~l~~~~~~~qdl~ 116 (1062)
T KOG1912|consen 50 SIELHQSAVTSVRWAPAPSPRDLLSPSSSQLLIASADISGRIILVDFVLASV-------------INWLSHSNDSVQDLC 116 (1062)
T ss_pred ccccCccceeEEEeccCCCchhccCccccceeEEeccccCcEEEEEehhhhh-------------hhhhcCCCcchhhee
Confidence 34458889999999653 322 23788899999999999876533 666788899999999
Q ss_pred Eec---CC-CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 116 WIK---ED-TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 116 ~s~---~~-~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
|-+ +. ..|+.-....+|.+|+..+|+.............|+.+.|-+...+..-+..|.+.+-+.-..........
T Consensus 117 W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk~~ys~~iLs~f~~DPfd~rh~~~l~s~g~vl~~~~l~~sep~~pgk 196 (1062)
T KOG1912|consen 117 WVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWKYDYSHEILSCFRVDPFDSRHFCVLGSKGFVLSCKDLGLSEPDVPGK 196 (1062)
T ss_pred eeeccCcchheeEEecCCcEEEEEEccCCceeeccccCCcceeeeeeCCCCcceEEEEccCceEEEEeccCCCCCCCCce
Confidence 988 33 45666667789999999999999888776677888999998877787777788888877654443332222
Q ss_pred cceeeecccccccccccc---cccceeccccc---ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 192 ESFVFSSAVVKGAHLLSQ---SKRVSRRKAAS---MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~---~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
...+.+. .....++... +.......... -....++|+|.-+.++... ....+.++|++-.........
T Consensus 197 ~~qI~sd-~Sdl~~lere~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~-~prellv~dle~~~~l~vvpi---- 270 (1062)
T KOG1912|consen 197 EFQITSD-HSDLAHLERETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFIT-FPRELLVFDLEYECCLAVVPI---- 270 (1062)
T ss_pred eEEEecC-ccchhhhhhhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEE-eccceEEEcchhhceeEEEEe----
Confidence 2222111 1110110000 00000000000 0122356677655555444 578899999987666554321
Q ss_pred ccccccccccCeeEEEeCCCC--CEEEEEecCCeEEEEE
Q 010390 266 SSSAKETRLHGISSLSQDSNG--VFLTASCMDHRIYLYN 302 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~--~~l~~~~~dg~i~i~d 302 (512)
..+.+.-+.+-|++ ..|++...||.+.+|-
T Consensus 271 -------er~~akfv~vlP~~~rd~LfclH~nG~ltirv 302 (1062)
T KOG1912|consen 271 -------ERGGAKFVDVLPDPRRDALFCLHSNGRLTIRV 302 (1062)
T ss_pred -------ccCCcceeEeccCCCcceEEEEecCCeEEEEE
Confidence 22334445555544 4677777888877775
No 274
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=99.19 E-value=8.1e-08 Score=86.43 Aligned_cols=173 Identities=15% Similarity=0.090 Sum_probs=127.5
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ-TIKIWDAEKKKC 142 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~ 142 (512)
+|+++|..+ .|...|.+...+.. .--+|.+.|.-..+.-+++-++.|..|| .+-|+|..+++.
T Consensus 331 ~Gd~ia~VS-RGkaFi~~~~~~~~---------------iqv~~~~~VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e~ 394 (668)
T COG4946 331 NGDYIALVS-RGKAFIMRPWDGYS---------------IQVGKKGGVRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGEV 394 (668)
T ss_pred CCcEEEEEe-cCcEEEECCCCCee---------------EEcCCCCceEEEEEccCCcceEEeccCCceEEEEecCCceE
Confidence 688888887 56787877654421 1236778899999988888999999999 899999988865
Q ss_pred eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
.. +...-+.|.++..+++| ..++.+-....|.+.|+.++..... -+...+-
T Consensus 395 kr-~e~~lg~I~av~vs~dG-K~~vvaNdr~el~vididngnv~~i---------------------------dkS~~~l 445 (668)
T COG4946 395 KR-IEKDLGNIEAVKVSPDG-KKVVVANDRFELWVIDIDNGNVRLI---------------------------DKSEYGL 445 (668)
T ss_pred EE-eeCCccceEEEEEcCCC-cEEEEEcCceEEEEEEecCCCeeEe---------------------------cccccce
Confidence 44 44566789999999998 8888888888999999998765331 1223457
Q ss_pred EEEEEEeecCCEEEEEe---ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe
Q 010390 223 ITSVLYLKDEVSIATAS---AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC 293 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (512)
|+.+.|+|++++++.+= ..-..|+++|+.+++..... .....=.+-+|+|++++|.--+
T Consensus 446 Itdf~~~~nsr~iAYafP~gy~tq~Iklydm~~~Kiy~vT------------T~ta~DfsPaFD~d~ryLYfLs 507 (668)
T COG4946 446 ITDFDWHPNSRWIAYAFPEGYYTQSIKLYDMDGGKIYDVT------------TPTAYDFSPAFDPDGRYLYFLS 507 (668)
T ss_pred eEEEEEcCCceeEEEecCcceeeeeEEEEecCCCeEEEec------------CCcccccCcccCCCCcEEEEEe
Confidence 99999999999998742 23347999999987765321 1222234567888998877554
No 275
>PLN02919 haloacid dehalogenase-like hydrolase family protein
Probab=99.18 E-value=2e-08 Score=105.85 Aligned_cols=272 Identities=11% Similarity=0.035 Sum_probs=160.5
Q ss_pred EEEEEecC-CCEEEEEeCCCcEEEEeCCCCeeeecccC--------------cCCCEEEEEeeCCCCCeEEEEeCCCcEE
Q 010390 112 FDLCWIKE-DTNILTASGDQTIKIWDAEKKKCTGALMG--------------HTGSIKSLCSHPTNSDILVSGSRDGSFA 176 (512)
Q Consensus 112 ~~l~~s~~-~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--------------h~~~v~~l~~~~~~~~~l~s~~~dg~i~ 176 (512)
..++++++ +..+++-..++.|++||... +.+..+.+ .-.....+++.++++.++++-..++.|+
T Consensus 571 ~gvavd~~~g~lyVaDs~n~rI~v~d~~G-~~i~~ig~~g~~G~~dG~~~~a~f~~P~GIavd~~gn~LYVaDt~n~~Ir 649 (1057)
T PLN02919 571 GKLAIDLLNNRLFISDSNHNRIVVTDLDG-NFIVQIGSTGEEGLRDGSFEDATFNRPQGLAYNAKKNLLYVADTENHALR 649 (1057)
T ss_pred ceEEEECCCCeEEEEECCCCeEEEEeCCC-CEEEEEccCCCcCCCCCchhccccCCCcEEEEeCCCCEEEEEeCCCceEE
Confidence 45788874 55666777788999999754 33333321 1123578899987733444445567899
Q ss_pred EEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390 177 IWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256 (512)
Q Consensus 177 vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~ 256 (512)
++|+.++.......... .+. .. ....... ...-.....++++|++..++++...++.|++||..++...
T Consensus 650 ~id~~~~~V~tlag~G~--------~g~-~~-~gg~~~~-~~~ln~P~gVa~dp~~g~LyVad~~~~~I~v~d~~~g~v~ 718 (1057)
T PLN02919 650 EIDFVNETVRTLAGNGT--------KGS-DY-QGGKKGT-SQVLNSPWDVCFEPVNEKVYIAMAGQHQIWEYNISDGVTR 718 (1057)
T ss_pred EEecCCCEEEEEeccCc--------ccC-CC-CCChhhh-HhhcCCCeEEEEecCCCeEEEEECCCCeEEEEECCCCeEE
Confidence 99986543211000000 000 00 0000000 0001234689999976667666767899999998776543
Q ss_pred ecccCCCccc---cccccccccCeeEEEeCCCCCEEEE-EecCCeEEEEEcccCCCCceE-----------eeeec----
Q 010390 257 ITQAWPHAES---SSAKETRLHGISSLSQDSNGVFLTA-SCMDHRIYLYNVLQLDKGPIQ-----------HFSGC---- 317 (512)
Q Consensus 257 ~~~~~~~~~~---~~~~~~~~~~i~~~~~~~~~~~l~~-~~~dg~i~i~d~~~~~~~~~~-----------~~~~~---- 317 (512)
.......... .............++++|++..|++ -+.++.|++||+.+.....+. .+...
T Consensus 719 ~~~G~G~~~~~~g~~~~~~~~~~P~GIavspdG~~LYVADs~n~~Irv~D~~tg~~~~~~gg~~~~~~~l~~fG~~dG~g 798 (1057)
T PLN02919 719 VFSGDGYERNLNGSSGTSTSFAQPSGISLSPDLKELYIADSESSSIRALDLKTGGSRLLAGGDPTFSDNLFKFGDHDGVG 798 (1057)
T ss_pred EEecCCccccCCCCccccccccCccEEEEeCCCCEEEEEECCCCeEEEEECCCCcEEEEEecccccCcccccccCCCCch
Confidence 2110000000 0000111234677999999985554 456689999998653211100 00000
Q ss_pred --eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec--------------cccCCeEEEEeCCCCCCeEEE
Q 010390 318 --RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK--------------SHDGEVTAVNWCPNEAGKIVT 381 (512)
Q Consensus 318 --~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~--------------~h~~~v~~v~~~~~~~~~l~s 381 (512)
..-.....++++++|+++++-..++.|++||..++... .+. +.-.....++++++| +++++
T Consensus 799 ~~~~l~~P~Gvavd~dG~LYVADs~N~rIrviD~~tg~v~--tiaG~G~~G~~dG~~~~a~l~~P~GIavd~dG-~lyVa 875 (1057)
T PLN02919 799 SEVLLQHPLGVLCAKDGQIYVADSYNHKIKKLDPATKRVT--TLAGTGKAGFKDGKALKAQLSEPAGLALGENG-RLFVA 875 (1057)
T ss_pred hhhhccCCceeeEeCCCcEEEEECCCCEEEEEECCCCeEE--EEeccCCcCCCCCcccccccCCceEEEEeCCC-CEEEE
Confidence 00112346889999998899889999999998765431 111 122357889999999 78999
Q ss_pred EeCCCcEEEEeCCCCcc
Q 010390 382 SSDDYTVRLWSLENSRC 398 (512)
Q Consensus 382 ~~~dg~i~vwd~~~~~~ 398 (512)
-+.++.|++||+.+++.
T Consensus 876 Dt~Nn~Irvid~~~~~~ 892 (1057)
T PLN02919 876 DTNNSLIRYLDLNKGEA 892 (1057)
T ss_pred ECCCCEEEEEECCCCcc
Confidence 99999999999999875
No 276
>KOG2315 consensus Predicted translation initiation factor related to eIF-3a [Translation, ribosomal structure and biogenesis]
Probab=99.18 E-value=3.7e-09 Score=96.82 Aligned_cols=253 Identities=12% Similarity=0.133 Sum_probs=160.1
Q ss_pred ceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC--CEEEE-----E
Q 010390 54 LAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED--TNILT-----A 126 (512)
Q Consensus 54 ~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~--~~l~s-----~ 126 (512)
++.+| ++|..+.|-- ..+.+.+|+..+... ..-+-|...|+.+.++|.. ..+++ .
T Consensus 129 W~~qf---s~dEsl~arl-v~nev~f~~~~~f~~--------------~~~kl~~~~i~~f~lSpgp~~~~vAvyvPe~k 190 (566)
T KOG2315|consen 129 WVPQF---SIDESLAARL-VSNEVQFYDLGSFKT--------------IQHKLSVSGITMLSLSPGPEPPFVAVYVPEKK 190 (566)
T ss_pred ccccc---ccchhhhhhh-hcceEEEEecCCccc--------------eeeeeeccceeeEEecCCCCCceEEEEccCCC
Confidence 45555 8877654433 355899999876321 1123467889999999863 34442 4
Q ss_pred eCCCcEEEEeCCCCeeeecc---cCcCCCEEEEEeeCCCCCeEEEEeCC-----------CcEEEEeCCCCCCCCCcccc
Q 010390 127 SGDQTIKIWDAEKKKCTGAL---MGHTGSIKSLCSHPTNSDILVSGSRD-----------GSFAIWDLRCKSSPKSNCAE 192 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~---~~h~~~v~~l~~~~~~~~~l~s~~~d-----------g~i~vwd~~~~~~~~~~~~~ 192 (512)
|.-+.|+||.......-..+ .-....=-.+.|++.+..+|+.++.| .++++.++......
T Consensus 191 GaPa~vri~~~~~~~~~~~~a~ksFFkadkvqm~WN~~gt~LLvLastdVDktn~SYYGEq~Lyll~t~g~s~~------ 264 (566)
T KOG2315|consen 191 GAPASVRIYKYPEEGQHQPVANKSFFKADKVQMKWNKLGTALLVLASTDVDKTNASYYGEQTLYLLATQGESVS------ 264 (566)
T ss_pred CCCcEEEEeccccccccchhhhccccccceeEEEeccCCceEEEEEEEeecCCCccccccceEEEEEecCceEE------
Confidence 55678999987633221111 11112223577888776666555432 34555555421111
Q ss_pred ceeeecccccccccccccccceecccccccEEEEEEeecCCEEEE-EeecCCeEEEEeccCccceecccCCCcccccccc
Q 010390 193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIAT-ASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKE 271 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~-~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~ 271 (512)
.-....++|.++.|++++..+++ -|..-..+.|||++..- .+.
T Consensus 265 ----------------------V~L~k~GPVhdv~W~~s~~EF~VvyGfMPAkvtifnlr~~~--------------v~d 308 (566)
T KOG2315|consen 265 ----------------------VPLLKEGPVHDVTWSPSGREFAVVYGFMPAKVTIFNLRGKP--------------VFD 308 (566)
T ss_pred ----------------------EecCCCCCceEEEECCCCCEEEEEEecccceEEEEcCCCCE--------------eEe
Confidence 11133679999999999987654 45566789999988543 233
Q ss_pred ccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC------CC
Q 010390 272 TRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS------DG 342 (512)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~------dg 342 (512)
...++-+++-|+|.|++++.++.+ |.|-+||+.+ .+.+..+.... .+-+.|+|||+++++++. |+
T Consensus 309 f~egpRN~~~fnp~g~ii~lAGFGNL~G~mEvwDv~n--~K~i~~~~a~~----tt~~eW~PdGe~flTATTaPRlrvdN 382 (566)
T KOG2315|consen 309 FPEGPRNTAFFNPHGNIILLAGFGNLPGDMEVWDVPN--RKLIAKFKAAN----TTVFEWSPDGEYFLTATTAPRLRVDN 382 (566)
T ss_pred CCCCCccceEECCCCCEEEEeecCCCCCceEEEeccc--hhhccccccCC----ceEEEEcCCCcEEEEEeccccEEecC
Confidence 344667889999999999988855 8999999876 33333333322 233799999999988875 67
Q ss_pred CEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390 343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 375 (512)
.++||++.........+. .....+.|-|..
T Consensus 383 g~KiwhytG~~l~~~~f~---sEL~qv~W~P~~ 412 (566)
T KOG2315|consen 383 GIKIWHYTGSLLHEKMFK---SELLQVEWRPFN 412 (566)
T ss_pred CeEEEEecCceeehhhhh---HhHhheeeeecC
Confidence 899999976433222221 157788888754
No 277
>PF04762 IKI3: IKI3 family; InterPro: IPR006849 Members of this family are components of the elongator multi-subunit component of a novel RNA polymerase II holoenzyme for transcriptional elongation [].
Probab=99.17 E-value=1.7e-07 Score=97.15 Aligned_cols=269 Identities=13% Similarity=0.150 Sum_probs=165.9
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEE----eCCCC--eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIW----DAEKK--KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iw----d~~~~--~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
...+.|.++.|.++...|+.+..+|.|.+. +..+. +.+.. -...|.+++|+||+ .+|+....+++|.+.+
T Consensus 73 ~~~~~ivs~~yl~d~~~l~~~~~~Gdi~~~~~~~~~~~~~~E~VG~---vd~GI~a~~WSPD~-Ella~vT~~~~l~~mt 148 (928)
T PF04762_consen 73 DPNDKIVSFQYLADSESLCIALASGDIILVREDPDPDEDEIEIVGS---VDSGILAASWSPDE-ELLALVTGEGNLLLMT 148 (928)
T ss_pred CCCCcEEEEEeccCCCcEEEEECCceEEEEEccCCCCCceeEEEEE---EcCcEEEEEECCCc-CEEEEEeCCCEEEEEe
Confidence 345789999999999999999999999999 55443 23333 34689999999998 7888888888888764
Q ss_pred CC----CCCCCCCcc-ccceeeeccccc--------ccccccc--------cccceecccccccEEEEEEeecCCEEEEE
Q 010390 180 LR----CKSSPKSNC-AESFVFSSAVVK--------GAHLLSQ--------SKRVSRRKAASMSITSVLYLKDEVSIATA 238 (512)
Q Consensus 180 ~~----~~~~~~~~~-~~~~~~~~~~~~--------~~~~~~~--------~~~~~~~~~~~~~v~~~~~~~~~~~l~~~ 238 (512)
-. ......... ......+..+.+ .+..... ........ .+..-..++|-.||.+++++
T Consensus 149 ~~fd~i~E~~l~~~~~~~~~~VsVGWGkKeTQF~Gs~gK~aa~~~~~p~~~~~d~~~~s-~dd~~~~ISWRGDG~yFAVs 227 (928)
T PF04762_consen 149 RDFDPISEVPLDSDDFGESKHVSVGWGKKETQFHGSAGKAAARQLRDPTVPKVDEGKLS-WDDGRVRISWRGDGEYFAVS 227 (928)
T ss_pred ccceEEEEeecCccccCCCceeeeccCcccCccCcchhhhhhhhccCCCCCccccCccc-cCCCceEEEECCCCcEEEEE
Confidence 22 111111000 000000000000 0000000 00011122 45577889999999999986
Q ss_pred ee--cC---CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec---CCeEEEEEcccCCCCc
Q 010390 239 SA--VN---SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM---DHRIYLYNVLQLDKGP 310 (512)
Q Consensus 239 g~--~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~---dg~i~i~d~~~~~~~~ 310 (512)
.- .. ..+++|+-+ +..... .+.-.+--.+++|.|.|+++++... ...|.+|.-+......
T Consensus 228 s~~~~~~~~R~iRVy~Re-G~L~st-----------SE~v~gLe~~l~WrPsG~lIA~~q~~~~~~~VvFfErNGLrhge 295 (928)
T PF04762_consen 228 SVEPETGSRRVIRVYSRE-GELQST-----------SEPVDGLEGALSWRPSGNLIASSQRLPDRHDVVFFERNGLRHGE 295 (928)
T ss_pred EEEcCCCceeEEEEECCC-ceEEec-----------cccCCCccCCccCCCCCCEEEEEEEcCCCcEEEEEecCCcEeee
Confidence 64 22 589999976 332221 1111122457899999999998764 3567777754332222
Q ss_pred eEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc-eec-cccCCeEEEEeCCCCCCeEEEEeCCCcE
Q 010390 311 IQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI-KLK-SHDGEVTAVNWCPNEAGKIVTSSDDYTV 388 (512)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~-~~~-~h~~~v~~v~~~~~~~~~l~s~~~dg~i 388 (512)
..+........+..+.|++|+..||....|. |++|-..+..-.++ .+. .....+..+.|+|..+..|.....+|.+
T Consensus 296 -F~l~~~~~~~~v~~l~Wn~ds~iLAv~~~~~-vqLWt~~NYHWYLKqei~~~~~~~~~~~~Wdpe~p~~L~v~t~~g~~ 373 (928)
T PF04762_consen 296 -FTLRFDPEEEKVIELAWNSDSEILAVWLEDR-VQLWTRSNYHWYLKQEIRFSSSESVNFVKWDPEKPLRLHVLTSNGQY 373 (928)
T ss_pred -EecCCCCCCceeeEEEECCCCCEEEEEecCC-ceEEEeeCCEEEEEEEEEccCCCCCCceEECCCCCCEEEEEecCCcE
Confidence 2222223344578899999999999977665 99998877643211 222 2233455699999988888888887777
Q ss_pred EEEeC
Q 010390 389 RLWSL 393 (512)
Q Consensus 389 ~vwd~ 393 (512)
..+++
T Consensus 374 ~~~~~ 378 (928)
T PF04762_consen 374 EIYDF 378 (928)
T ss_pred EEEEE
Confidence 65443
No 278
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=99.16 E-value=4.9e-08 Score=82.62 Aligned_cols=216 Identities=15% Similarity=0.165 Sum_probs=135.2
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK 141 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 141 (512)
+.||++||+-- |..|.|=..++.-.... ......+.-.-.=+-++||||+..||.+...|+|+++|+....
T Consensus 6 ~~~Gk~lAi~q-d~~iEiRsa~Ddf~si~--------~kcqVpkD~~PQWRkl~WSpD~tlLa~a~S~G~i~vfdl~g~~ 76 (282)
T PF15492_consen 6 SSDGKLLAILQ-DQCIEIRSAKDDFSSII--------GKCQVPKDPNPQWRKLAWSPDCTLLAYAESTGTIRVFDLMGSE 76 (282)
T ss_pred cCCCcEEEEEe-ccEEEEEeccCCchhee--------EEEecCCCCCchheEEEECCCCcEEEEEcCCCeEEEEecccce
Confidence 78999988864 67788877655432110 0111122223345679999999999999999999999987543
Q ss_pred eeecccC-------cCCCEEEEEeeCCC-----CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390 142 CTGALMG-------HTGSIKSLCSHPTN-----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ 209 (512)
Q Consensus 142 ~~~~~~~-------h~~~v~~l~~~~~~-----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
+ ..+.. -...|..+.|.+.. ...|+.-..+|.++-|-+..+..........+
T Consensus 77 l-f~I~p~~~~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~Y~G~L~Sy~vs~gt~q~y~e~hsf--------------- 140 (282)
T PF15492_consen 77 L-FVIPPAMSFPGDLSDAIAGLIFLEYKKSAQWSYELLVINYRGQLRSYLVSVGTNQGYQENHSF--------------- 140 (282)
T ss_pred e-EEcCcccccCCccccceeeeEeeccccccccceeEEEEeccceeeeEEEEcccCCcceeeEEE---------------
Confidence 3 22221 23467777775432 23677777788888877643322211111111
Q ss_pred cccceecccccccEEEEEEeecCCEEEEEeecCC----------eEEEEeccCccceecccCCCcccc------------
Q 010390 210 SKRVSRRKAASMSITSVLYLKDEVSIATASAVNS----------IVKFWDTRNLKAQITQAWPHAESS------------ 267 (512)
Q Consensus 210 ~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg----------~i~iwd~~~~~~~~~~~~~~~~~~------------ 267 (512)
.-.......|.++.|+|..+.|+++|.... -+..|.+-++..-...........
T Consensus 141 ----sf~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL~~~Pyyk~v~~~~~~~~~~~~~~~~~~~ 216 (282)
T PF15492_consen 141 ----SFSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRILSDSPYYKQVTSSEDDITASSKRRGLLRI 216 (282)
T ss_pred ----EecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEcCCCCcEEEccccCccccccccccceeec
Confidence 011123568999999999999998776443 366677665543332211110000
Q ss_pred ------ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390 268 ------SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 268 ------~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 306 (512)
.........|..|..+|||..|++...+|.|.+|++-..
T Consensus 217 ~~~~~fs~~~~~~d~i~kmSlSPdg~~La~ih~sG~lsLW~iPsL 261 (282)
T PF15492_consen 217 PSFKFFSRQGQEQDGIFKMSLSPDGSLLACIHFSGSLSLWEIPSL 261 (282)
T ss_pred cceeeeeccccCCCceEEEEECCCCCEEEEEEcCCeEEEEecCcc
Confidence 011234567999999999999999999999999998654
No 279
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=99.15 E-value=7.6e-10 Score=97.16 Aligned_cols=174 Identities=16% Similarity=0.169 Sum_probs=114.0
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
....+..++.++.++++. .+....+++.+......... ....-...-+++.+..+.....++..-|.++-+
T Consensus 64 a~~~~~~s~~~~llAv~~-~~K~~~~f~~~~~~~~~kl~--------~~~~v~~~~~ai~~~~~~~sv~v~dkagD~~~~ 134 (390)
T KOG3914|consen 64 APALVLTSDSGRLVAVAT-SSKQRAVFDYRENPKGAKLL--------DVSCVPKRPTAISFIREDTSVLVADKAGDVYSF 134 (390)
T ss_pred cccccccCCCceEEEEEe-CCCceEEEEEecCCCcceee--------eEeecccCcceeeeeeccceEEEEeecCCceee
Confidence 344555667777776644 45666666666543211100 000111123344454455555555555555555
Q ss_pred EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390 302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381 (512)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s 381 (512)
|+...........-+| .+.+..++++||+++|+++..|..|++-.+.........+.||+.-|..++.-++ +.|+|
T Consensus 135 di~s~~~~~~~~~lGh--vSml~dVavS~D~~~IitaDRDEkIRvs~ypa~f~IesfclGH~eFVS~isl~~~--~~LlS 210 (390)
T KOG3914|consen 135 DILSADSGRCEPILGH--VSMLLDVAVSPDDQFIITADRDEKIRVSRYPATFVIESFCLGHKEFVSTISLTDN--YLLLS 210 (390)
T ss_pred eeecccccCcchhhhh--hhhhheeeecCCCCEEEEecCCceEEEEecCcccchhhhccccHhheeeeeeccC--ceeee
Confidence 5433222222233333 4668889999999999999999999999887766555667899999999999886 47999
Q ss_pred EeCCCcEEEEeCCCCcccccccCcccc
Q 010390 382 SSDDYTVRLWSLENSRCSSMRSPSSVR 408 (512)
Q Consensus 382 ~~~dg~i~vwd~~~~~~~~~~~~~~~~ 408 (512)
+|.|++|++||+.+|+++.++......
T Consensus 211 ~sGD~tlr~Wd~~sgk~L~t~dl~s~~ 237 (390)
T KOG3914|consen 211 GSGDKTLRLWDITSGKLLDTCDLSSLV 237 (390)
T ss_pred cCCCCcEEEEecccCCcccccchhHhh
Confidence 999999999999999999886644443
No 280
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=99.15 E-value=2.3e-08 Score=95.02 Aligned_cols=282 Identities=12% Similarity=0.034 Sum_probs=157.9
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
.+..+++++.+|.|.-+|..+++..- ............. .++..++.++.++.+..+|..+|+.+
T Consensus 64 ~~~~v~v~~~~g~v~a~d~~tG~~~W-------------~~~~~~~~~~~p~--v~~~~v~v~~~~g~l~ald~~tG~~~ 128 (377)
T TIGR03300 64 AGGKVYAADADGTVVALDAETGKRLW-------------RVDLDERLSGGVG--ADGGLVFVGTEKGEVIALDAEDGKEL 128 (377)
T ss_pred ECCEEEEECCCCeEEEEEccCCcEee-------------eecCCCCcccceE--EcCCEEEEEcCCCEEEEEECCCCcEe
Confidence 46678888889999999988775421 1111111111122 25678888889999999999999988
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
...... +.+.+.-.. .+ ..++.++.+|.|..||.++++........... ......
T Consensus 129 W~~~~~-~~~~~~p~v-~~-~~v~v~~~~g~l~a~d~~tG~~~W~~~~~~~~------------------~~~~~~---- 183 (377)
T TIGR03300 129 WRAKLS-SEVLSPPLV-AN-GLVVVRTNDGRLTALDAATGERLWTYSRVTPA------------------LTLRGS---- 183 (377)
T ss_pred eeeccC-ceeecCCEE-EC-CEEEEECCCCeEEEEEcCCCceeeEEccCCCc------------------eeecCC----
Confidence 766532 223221111 13 46777788999999999888754432110000 000000
Q ss_pred EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe-eEEEeCCCCCEEEEEecCCeEEEEE
Q 010390 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI-SSLSQDSNGVFLTASCMDHRIYLYN 302 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i-~~~~~~~~~~~l~~~~~dg~i~i~d 302 (512)
.+.... ++ .+++ +..++.+..+|.++++................ .....+ ....+ .+..+++++.+|.++.||
T Consensus 184 ~sp~~~-~~-~v~~-~~~~g~v~ald~~tG~~~W~~~~~~~~g~~~~-~~~~~~~~~p~~--~~~~vy~~~~~g~l~a~d 257 (377)
T TIGR03300 184 ASPVIA-DG-GVLV-GFAGGKLVALDLQTGQPLWEQRVALPKGRTEL-ERLVDVDGDPVV--DGGQVYAVSYQGRVAALD 257 (377)
T ss_pred CCCEEE-CC-EEEE-ECCCCEEEEEEccCCCEeeeeccccCCCCCch-hhhhccCCccEE--ECCEEEEEEcCCEEEEEE
Confidence 011111 22 3443 55689999999998876654321110000000 000000 01111 245777888899999999
Q ss_pred cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390 303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 382 (512)
..+++. +-.... .. . ......+..+++++.+|.++.+|..+++..............+... .+ ..|+++
T Consensus 258 ~~tG~~--~W~~~~---~~-~--~~p~~~~~~vyv~~~~G~l~~~d~~tG~~~W~~~~~~~~~~ssp~i--~g-~~l~~~ 326 (377)
T TIGR03300 258 LRSGRV--LWKRDA---SS-Y--QGPAVDDNRLYVTDADGVVVALDRRSGSELWKNDELKYRQLTAPAV--VG-GYLVVG 326 (377)
T ss_pred CCCCcE--EEeecc---CC-c--cCceEeCCEEEEECCCCeEEEEECCCCcEEEccccccCCccccCEE--EC-CEEEEE
Confidence 876432 111111 11 1 1111346778888889999999998876532111111111222222 24 588899
Q ss_pred eCCCcEEEEeCCCCcccccc
Q 010390 383 SDDYTVRLWSLENSRCSSMR 402 (512)
Q Consensus 383 ~~dg~i~vwd~~~~~~~~~~ 402 (512)
+.||.|+++|..+|+.+...
T Consensus 327 ~~~G~l~~~d~~tG~~~~~~ 346 (377)
T TIGR03300 327 DFEGYLHWLSREDGSFVARL 346 (377)
T ss_pred eCCCEEEEEECCCCCEEEEE
Confidence 99999999999999877543
No 281
>TIGR02658 TTQ_MADH_Hv methylamine dehydrogenase heavy chain. This family consists of the heavy chain of methylamine dehydrogenase light chain, a periplasmic enzyme. The enzyme contains a tryptophan tryptophylquinone (TTQ) prothetic group derived from two Trp residues in the light subunity. The enzyme forms a complex with the type I blue copper protein amicyanin and a cytochrome. Electron transfer procedes from TQQ to the copper and then to the heme group of the cytochrome.
Probab=99.15 E-value=3.7e-08 Score=89.44 Aligned_cols=269 Identities=10% Similarity=0.001 Sum_probs=151.2
Q ss_pred CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe---------CCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS---------RDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
++|.+.|..+++.+..+..-..+- .+ ++|++..+.++.+ .+..|.+||..+.+..........
T Consensus 27 ~~v~ViD~~~~~v~g~i~~G~~P~-~~-~spDg~~lyva~~~~~R~~~G~~~d~V~v~D~~t~~~~~~i~~p~~------ 98 (352)
T TIGR02658 27 TQVYTIDGEAGRVLGMTDGGFLPN-PV-VASDGSFFAHASTVYSRIARGKRTDYVEVIDPQTHLPIADIELPEG------ 98 (352)
T ss_pred ceEEEEECCCCEEEEEEEccCCCc-ee-ECCCCCEEEEEeccccccccCCCCCEEEEEECccCcEEeEEccCCC------
Confidence 889999999999988886544333 34 9999855555666 688999999998775543321000
Q ss_pred ccccccccccccceecccccccEEEEEEeecCCEEEEEeec-CCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
...........++++|+|+.++++.-. +..|.+.|+.+.+.+....-+. +..-
T Consensus 99 --------------p~~~~~~~~~~~~ls~dgk~l~V~n~~p~~~V~VvD~~~~kvv~ei~vp~------------~~~v 152 (352)
T TIGR02658 99 --------------PRFLVGTYPWMTSLTPDNKTLLFYQFSPSPAVGVVDLEGKAFVRMMDVPD------------CYHI 152 (352)
T ss_pred --------------chhhccCccceEEECCCCCEEEEecCCCCCEEEEEECCCCcEEEEEeCCC------------CcEE
Confidence 000012234578899999999987644 8999999999988776442211 1111
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee-ceecee-EEEEEECC-CCCEEEEecCCCCEEEEecCCCCCC-
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-CRIESF-YVKSEICP-NASHILSGSSDGNAYVWQVNKPQAD- 355 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-~~~~~~-~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~~- 355 (512)
...+++..+ +-+.||......+............- +..... ...-.|.+ +|+++..... |.|.+.|+......
T Consensus 153 y~t~e~~~~--~~~~Dg~~~~v~~d~~g~~~~~~~~vf~~~~~~v~~rP~~~~~dg~~~~vs~e-G~V~~id~~~~~~~~ 229 (352)
T TIGR02658 153 FPTANDTFF--MHCRDGSLAKVGYGTKGNPKIKPTEVFHPEDEYLINHPAYSNKSGRLVWPTYT-GKIFQIDLSSGDAKF 229 (352)
T ss_pred EEecCCccE--EEeecCceEEEEecCCCceEEeeeeeecCCccccccCCceEcCCCcEEEEecC-CeEEEEecCCCccee
Confidence 111111111 11334444443332211111111000 000000 00113345 7888877765 99999997543211
Q ss_pred ---Cceec-------cccCCeEEEEeCCCCCCeEEEEe----------CCCcEEEEeCCCCcccccccCccccceeeeec
Q 010390 356 ---PIKLK-------SHDGEVTAVNWCPNEAGKIVTSS----------DDYTVRLWSLENSRCSSMRSPSSVRRRVMAIP 415 (512)
Q Consensus 356 ---~~~~~-------~h~~~v~~v~~~~~~~~~l~s~~----------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 415 (512)
...+. -..+.+.-+++++++ +.+.... ..+.|.++|..+++.+....
T Consensus 230 ~~~~~~~~~~~~~~~wrP~g~q~ia~~~dg-~~lyV~~~~~~~~thk~~~~~V~ViD~~t~kvi~~i~------------ 296 (352)
T TIGR02658 230 LPAIEAFTEAEKADGWRPGGWQQVAYHRAR-DRIYLLADQRAKWTHKTASRFLFVVDAKTGKRLRKIE------------ 296 (352)
T ss_pred cceeeeccccccccccCCCcceeEEEcCCC-CEEEEEecCCccccccCCCCEEEEEECCCCeEEEEEe------------
Confidence 11111 123345559999999 5555432 22579999999888766422
Q ss_pred cchhcccccCCCCcccccCCCCcCCCchh-cccCCCCCCCCCCeecCc
Q 010390 416 STECRKLFMNGEPGWLAKGSDRSYNSDDV-LNQINSSDPKNMPIIRTP 462 (512)
Q Consensus 416 ~~~~~~~~~~~~~~~~~~~~~~~~~p~~~-~~~~~~~~~~~~~~~~~~ 462 (512)
.+...+ .++++||++ ++.........+..+...
T Consensus 297 ---------vG~~~~-----~iavS~Dgkp~lyvtn~~s~~VsViD~~ 330 (352)
T TIGR02658 297 ---------LGHEID-----SINVSQDAKPLLYALSTGDKTLYIFDAE 330 (352)
T ss_pred ---------CCCcee-----eEEECCCCCeEEEEeCCCCCcEEEEECc
Confidence 233334 678888888 555455455555555554
No 282
>COG5354 Uncharacterized protein, contains Trp-Asp (WD) repeat [General function prediction only]
Probab=99.13 E-value=3.6e-08 Score=89.45 Aligned_cols=221 Identities=14% Similarity=0.120 Sum_probs=137.2
Q ss_pred CcEEEEEEecC--CCEEEE-----EeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe----------C
Q 010390 109 NAIFDLCWIKE--DTNILT-----ASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS----------R 171 (512)
Q Consensus 109 ~~V~~l~~s~~--~~~l~s-----~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~----------~ 171 (512)
..|....|+|. +..|+. .+.+++++||.+..+..+.+-.-....=..+.|.+.+..+++-.- .
T Consensus 174 ~gi~dFsisP~~n~~~la~~tPEk~~kpa~~~i~sIp~~s~l~tk~lfk~~~~qLkW~~~g~~ll~l~~t~~ksnKsyfg 253 (561)
T COG5354 174 VGILDFSISPEGNHDELAYWTPEKLNKPAMVRILSIPKNSVLVTKNLFKVSGVQLKWQVLGKYLLVLVMTHTKSNKSYFG 253 (561)
T ss_pred cceeeEEecCCCCCceEEEEccccCCCCcEEEEEEccCCCeeeeeeeEeecccEEEEecCCceEEEEEEEeeecccceec
Confidence 46777778884 333442 456778888888766554433222222335677777733333221 1
Q ss_pred CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEE-eecCCeEEEEec
Q 010390 172 DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATA-SAVNSIVKFWDT 250 (512)
Q Consensus 172 dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~-g~~dg~i~iwd~ 250 (512)
...+.+++++...... ...-.++|...+|.|.++.++++ |..+-.+.++|+
T Consensus 254 esnLyl~~~~e~~i~V----------------------------~~~~~~pVhdf~W~p~S~~F~vi~g~~pa~~s~~~l 305 (561)
T COG5354 254 ESNLYLLRITERSIPV----------------------------EKDLKDPVHDFTWEPLSSRFAVISGYMPASVSVFDL 305 (561)
T ss_pred cceEEEEeecccccce----------------------------eccccccceeeeecccCCceeEEecccccceeeccc
Confidence 2345666665322111 11336789999999988877654 478889999999
Q ss_pred cCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC---CeEEEEEcccCCCCceEeeeeceeceeEEEEE
Q 010390 251 RNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSE 327 (512)
Q Consensus 251 ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~ 327 (512)
+..- . .......=+.+.|+|.+++++.++.| |.|.+||.... ......+.+.. ..-+.
T Consensus 306 r~Nl-~-------------~~~Pe~~rNT~~fsp~~r~il~agF~nl~gni~i~~~~~r-f~~~~~~~~~n----~s~~~ 366 (561)
T COG5354 306 RGNL-R-------------FYFPEQKRNTIFFSPHERYILFAGFDNLQGNIEIFDPAGR-FKVAGAFNGLN----TSYCD 366 (561)
T ss_pred ccce-E-------------EecCCcccccccccCcccEEEEecCCccccceEEeccCCc-eEEEEEeecCC----ceEee
Confidence 8762 1 22222334568899999999998866 78999997431 11121233322 22368
Q ss_pred ECCCCCEEEEec------CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390 328 ICPNASHILSGS------SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 328 ~s~~~~~l~~g~------~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg 386 (512)
|+|+++++.+.. .|..|.|||+...... ..+.+.|.|.+ ++..+.+.+.
T Consensus 367 wspd~qF~~~~~ts~k~~~Dn~i~l~~v~g~~~f---------el~~~~W~p~~-~~~ttsSs~~ 421 (561)
T COG5354 367 WSPDGQFYDTDTTSEKLRVDNSIKLWDVYGAKVF---------ELTNITWDPSG-QYVTTSSSCP 421 (561)
T ss_pred ccCCceEEEecCCCcccccCcceEEEEecCchhh---------hhhhccccCCc-ccceeeccCC
Confidence 999999997764 3778999999764331 46678898887 5655555544
No 283
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=99.13 E-value=1.2e-09 Score=90.13 Aligned_cols=201 Identities=12% Similarity=0.113 Sum_probs=120.5
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-ee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-CT 143 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-~~ 143 (512)
...|+++..++.+...............+. ....+...+..|.++-.+-+.+-.+..++++..||.+.+.+.+... ..
T Consensus 47 ~~~lf~~e~~~~~ss~g~~r~~~~~~~~rt-~~i~~~~~~a~~sep~p~~~~s~~~t~V~~~~~dg~~~v~s~~~~~~~~ 125 (319)
T KOG4714|consen 47 EYILFTGETSSQIISLGKGRGRCISLWERD-DGIDPFKVLAKNSEIDPNDACTMTDNRVCIGYADGSLAVFSTDKDLALM 125 (319)
T ss_pred hheeecccchhheeeeccceEEEechhhcc-cCcCceeeeeccCCCCCcccccccCCceEecCCCceEEEEechHHHhhh
Confidence 346777777776666654333211111110 1112233333444443333334456789999999999999876521 11
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeC-----CCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSR-----DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA 218 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~-----dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (512)
..+..-...-.+.++...+ +.+.++.. -+..+.|+++....... -..
T Consensus 126 ~~i~~~~~~~as~~~~~~~-~~i~s~~~g~~n~~d~~~a~~~~p~~t~~~---------------------------~~~ 177 (319)
T KOG4714|consen 126 SRIPSIHSGSASRKICRHG-NSILSGGCGNWNAQDNFYANTLDPIKTLIP---------------------------SKK 177 (319)
T ss_pred hhcccccccccccceeecc-cEEecCCcceEeeccceeeecccccccccc---------------------------ccc
Confidence 1111111111222333333 44444332 23455566553322111 111
Q ss_pred ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC-CCCEEEEEecCCe
Q 010390 219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS-NGVFLTASCMDHR 297 (512)
Q Consensus 219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~-~~~~l~~~~~dg~ 297 (512)
....|.+++-+|..+.++++|+.||.+.+||.++...+.. .+..|+.+|..+.|+| ++..|++++.||.
T Consensus 178 ~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S----------~l~ahk~~i~eV~FHpk~p~~Lft~sedGs 247 (319)
T KOG4714|consen 178 ALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVS----------LLKAHKAEIWEVHFHPKNPEHLFTCSEDGS 247 (319)
T ss_pred ccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHH----------HHHHhhhhhhheeccCCCchheeEecCCCc
Confidence 1234899999999999999999999999999998754443 5788889999999998 5679999999999
Q ss_pred EEEEEcc
Q 010390 298 IYLYNVL 304 (512)
Q Consensus 298 i~i~d~~ 304 (512)
+..||..
T Consensus 248 lw~wdas 254 (319)
T KOG4714|consen 248 LWHWDAS 254 (319)
T ss_pred EEEEcCC
Confidence 9999965
No 284
>KOG1912 consensus WD40 repeat protein [General function prediction only]
Probab=99.12 E-value=8.9e-09 Score=97.90 Aligned_cols=300 Identities=13% Similarity=0.135 Sum_probs=183.4
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC------------C
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE------------D 120 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~------------~ 120 (512)
-.++.| +|.| +||.|+.. .|.+-|..+- +.++.+..|+..|+.+.|.|- .
T Consensus 18 ~~A~Dw---~~~G-LiAygshs-lV~VVDs~s~-------------q~iqsie~h~s~V~~VrWap~~~p~~llS~~~~~ 79 (1062)
T KOG1912|consen 18 RNAADW---SPSG-LIAYGSHS-LVSVVDSRSL-------------QLIQSIELHQSAVTSVRWAPAPSPRDLLSPSSSQ 79 (1062)
T ss_pred cccccc---Cccc-eEEEecCc-eEEEEehhhh-------------hhhhccccCccceeEEEeccCCCchhccCccccc
Confidence 457777 7755 78888754 7888887654 347788899999999999872 1
Q ss_pred CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCC---CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeee
Q 010390 121 TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTN---SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFS 197 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~---~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~ 197 (512)
-.|+++.-.|.|.+||...+..+..+..|..++..++|-+.. ...|++-....+|.+|+..+++....
T Consensus 80 lliAsaD~~GrIil~d~~~~s~~~~l~~~~~~~qdl~W~~~rd~Srd~LlaIh~ss~lvLwntdtG~k~Wk--------- 150 (1062)
T KOG1912|consen 80 LLIASADISGRIILVDFVLASVINWLSHSNDSVQDLCWVPARDDSRDVLLAIHGSSTLVLWNTDTGEKFWK--------- 150 (1062)
T ss_pred eeEEeccccCcEEEEEehhhhhhhhhcCCCcchhheeeeeccCcchheeEEecCCcEEEEEEccCCceeec---------
Confidence 246677778999999999999999999999999999997632 24666667778999999998875442
Q ss_pred cccccccccccccccceecccccccEEEEEEeec-CCEEEEEeecCCeEEEEeccCccce------ecccCCCccccc-c
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVKFWDTRNLKAQ------ITQAWPHAESSS-A 269 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~iwd~~~~~~~------~~~~~~~~~~~~-~ 269 (512)
.........|+.+.|- .+.+.+.| ..|.+.+-+.-..... .....++..... .
T Consensus 151 ------------------~~ys~~iLs~f~~DPfd~rh~~~l~-s~g~vl~~~~l~~sep~~pgk~~qI~sd~Sdl~~le 211 (1062)
T KOG1912|consen 151 ------------------YDYSHEILSCFRVDPFDSRHFCVLG-SKGFVLSCKDLGLSEPDVPGKEFQITSDHSDLAHLE 211 (1062)
T ss_pred ------------------cccCCcceeeeeeCCCCcceEEEEc-cCceEEEEeccCCCCCCCCceeEEEecCccchhhhh
Confidence 2223345666888874 44455444 4666666654322111 111111110000 0
Q ss_pred c-----cccc---------cCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEE
Q 010390 270 K-----ETRL---------HGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHI 335 (512)
Q Consensus 270 ~-----~~~~---------~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l 335 (512)
. ..+. .-.-.++|+|.-+.++.......+.++|++-... +....-......+..+--.|+...|
T Consensus 212 re~at~ns~ts~~~sa~fity~a~faf~p~~rn~lfi~~prellv~dle~~~~--l~vvpier~~akfv~vlP~~~rd~L 289 (1062)
T KOG1912|consen 212 RETATGNSTTSTPASAYFITYCAQFAFSPHWRNILFITFPRELLVFDLEYECC--LAVVPIERGGAKFVDVLPDPRRDAL 289 (1062)
T ss_pred hhhhccccccCCCcchhHHHHHHhhhcChhhhceEEEEeccceEEEcchhhce--eEEEEeccCCcceeEeccCCCcceE
Confidence 0 0000 0022356777766666666788899999865322 2222222212223333333445679
Q ss_pred EEecCCCCEEEEecCCCCCCCce---------------ecc-ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 336 LSGSSDGNAYVWQVNKPQADPIK---------------LKS-HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 336 ~~g~~dg~i~iw~~~~~~~~~~~---------------~~~-h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
+++-.||.+.+|-.+........ +.. .+-.+......|..+..++.--.+|.+.+|.+.+|+.-
T Consensus 290 fclH~nG~ltirvrk~~~~~f~~~~~~l~~dl~~Q~~~vr~m~~~rp~~~~~cPs~~sa~avl~s~g~~~~w~l~~~ri~ 369 (1062)
T KOG1912|consen 290 FCLHSNGRLTIRVRKEEPTEFKKPNASLSMDLGEQVHVVRPMEEFRPVIGASCPSTPSALAVLYSSGDSTFWQLSNGRIH 369 (1062)
T ss_pred EEEecCCeEEEEEeeccCccccccchhhccccccceEEEeechhcccceeecCCCChhhhhhhhhcchhHHHhhhcCCcC
Confidence 99999999999976542111111 000 11123333445654456666667889999999987754
Q ss_pred c
Q 010390 400 S 400 (512)
Q Consensus 400 ~ 400 (512)
.
T Consensus 370 ~ 370 (1062)
T KOG1912|consen 370 L 370 (1062)
T ss_pred c
Confidence 3
No 285
>KOG1064 consensus RAVE (regulator of V-ATPase assembly) complex subunit RAV1/DMX protein, WD repeat superfamily [General function prediction only]
Probab=99.09 E-value=6.3e-10 Score=114.64 Aligned_cols=189 Identities=12% Similarity=0.195 Sum_probs=145.1
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccc-cCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWV-AHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~-~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
|..|..+.-+|...+-+||+.||.|++|....+.+ +..+. +-...|+.+.|+.+|..+..+..||.
T Consensus 2208 v~~v~r~~sHp~~~~Yltgs~dgsv~~~~w~~~~~-------------v~~~rt~g~s~vtr~~f~~qGnk~~i~d~dg~ 2274 (2439)
T KOG1064|consen 2208 VENVRRMTSHPSDPYYLTGSQDGSVRMFEWGHGQQ-------------VVCFRTAGNSRVTRSRFNHQGNKFGIVDGDGD 2274 (2439)
T ss_pred cCceeeecCCCCCceEEecCCCceEEEEeccCCCe-------------EEEeeccCcchhhhhhhcccCCceeeeccCCc
Confidence 33444443388889999999999999999876643 22222 23388999999999999999999999
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe---CCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS---RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~---~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
+.+|.+. .++....+.|......+.|-. ..+++++ .++.+.+||..-.....
T Consensus 2275 l~l~q~~-pk~~~s~qchnk~~~Df~Fi~---s~~~tag~s~d~~n~~lwDtl~~~~~s--------------------- 2329 (2439)
T KOG1064|consen 2275 LSLWQAS-PKPYTSWQCHNKALSDFRFIG---SLLATAGRSSDNRNVCLWDTLLPPMNS--------------------- 2329 (2439)
T ss_pred eeecccC-CcceeccccCCccccceeeee---hhhhccccCCCCCcccchhcccCcccc---------------------
Confidence 9999976 667777888999999999875 5677665 46899999975332111
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVF 288 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (512)
. .-..|.+.++++++.|....+++ |+.+|.|++||++..+...... . ++ ...+
T Consensus 2330 ---~--v~~~H~~gaT~l~~~P~~qllis-ggr~G~v~l~D~rqrql~h~~~----------------~----~~-~~~~ 2382 (2439)
T KOG1064|consen 2330 ---L--VHTCHDGGATVLAYAPKHQLLIS-GGRKGEVCLFDIRQRQLRHTFQ----------------A----LD-TREY 2382 (2439)
T ss_pred ---e--eeeecCCCceEEEEcCcceEEEe-cCCcCcEEEeehHHHHHHHHhh----------------h----hh-hhhe
Confidence 1 11689999999999999888887 6699999999999766554321 1 34 5668
Q ss_pred EEEEecCCeEEEEEcccC
Q 010390 289 LTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 289 l~~~~~dg~i~i~d~~~~ 306 (512)
+++++..|.|+||++...
T Consensus 2383 f~~~ss~g~ikIw~~s~~ 2400 (2439)
T KOG1064|consen 2383 FVTGSSEGNIKIWRLSEF 2400 (2439)
T ss_pred eeccCcccceEEEEcccc
Confidence 999999999999998653
No 286
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=3.8e-08 Score=81.92 Aligned_cols=241 Identities=10% Similarity=-0.011 Sum_probs=152.8
Q ss_pred cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390 66 HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASGDQTIKIWDAEKKKCTG 144 (512)
Q Consensus 66 ~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~ 144 (512)
.+||.|+..|...+|...+.+.. +.....|...|+-+.=.. ....+..++.|.++++.+++.+....
T Consensus 85 ~~la~gG~~g~fd~~~~~tn~~h------------~~~cd~snn~v~~~~r~cd~~~~~~i~sndht~k~~~~~~~s~~~ 152 (344)
T KOG4532|consen 85 VTLADGGASGQFDLFACNTNDGH------------LYQCDVSNNDVTLVKRYCDLKFPLNIASNDHTGKTMVVSGDSNKF 152 (344)
T ss_pred cEEEeccccceeeeecccCcccc------------eeeecccccchhhhhhhcccccceeeccCCcceeEEEEecCcccc
Confidence 48999999999999998865432 223334444443322111 22346677889999999887654332
Q ss_pred cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390 145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT 224 (512)
Q Consensus 145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (512)
.+....-.++++++++++ .++++.+....|-.|.+......... .........-.
T Consensus 153 ~~h~~~~~~ns~~~snd~-~~~~~Vgds~~Vf~y~id~~sey~~~------------------------~~~a~t~D~gF 207 (344)
T KOG4532|consen 153 AVHNQNLTQNSLHYSNDP-SWGSSVGDSRRVFRYAIDDESEYIEN------------------------IYEAPTSDHGF 207 (344)
T ss_pred eeeccccceeeeEEcCCC-ceEEEecCCCcceEEEeCCccceeee------------------------eEecccCCCce
Confidence 222111238899999988 89999999999999998755432111 01122234456
Q ss_pred EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC--EEEEEecCCeEEEEE
Q 010390 225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV--FLTASCMDHRIYLYN 302 (512)
Q Consensus 225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~--~l~~~~~dg~i~i~d 302 (512)
+..|+.....+++ +..||.+.|||++....+...... ....|.+.+..+.|++.|. +|+..-.-+.+.+.|
T Consensus 208 ~~S~s~~~~~FAv-~~Qdg~~~I~DVR~~~tpm~~~ss------trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D 280 (344)
T KOG4532|consen 208 YNSFSENDLQFAV-VFQDGTCAIYDVRNMATPMAEISS------TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVD 280 (344)
T ss_pred eeeeccCcceEEE-EecCCcEEEEEecccccchhhhcc------cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEE
Confidence 7788888888777 569999999999987655433221 3455889999999998664 566666678999999
Q ss_pred cccCCCCceEeeeece----eceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 303 VLQLDKGPIQHFSGCR----IESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~~----~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
+++.....+....... ....+....|+.++.-+.+.+.+. +.-|++.+
T Consensus 281 ~R~~~~~q~I~i~~d~~~~~~tq~ifgt~f~~~n~s~~v~~e~~-~ae~ni~s 332 (344)
T KOG4532|consen 281 TRNYVNHQVIVIPDDVERKHNTQHIFGTNFNNENESNDVKNELQ-GAEYNILS 332 (344)
T ss_pred cccCceeeEEecCccccccccccccccccccCCCcccccccchh-hheeeccc
Confidence 9886544333222211 112244456666666555554432 45555544
No 287
>KOG4532 consensus WD40-like repeat containing protein [General function prediction only]
Probab=99.07 E-value=2.4e-08 Score=83.09 Aligned_cols=229 Identities=10% Similarity=0.077 Sum_probs=142.0
Q ss_pred CCcEEEEeCCCCe--eeecccCcCCCEEEEEeeCC----CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 129 DQTIKIWDAEKKK--CTGALMGHTGSIKSLCSHPT----NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 129 dg~i~iwd~~~~~--~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
...+.+|++-+.. .+... ..+.|.|. ...+|+.|+.-|.+.+|...+.+.....+.
T Consensus 51 t~sv~i~~~y~N~~~iv~~y-------~g~~F~p~s~~~kc~~la~gG~~g~fd~~~~~tn~~h~~~cd----------- 112 (344)
T KOG4532|consen 51 TISVPINSHYSNPKGIVEFY-------TGMTFTPGSFINKCVTLADGGASGQFDLFACNTNDGHLYQCD----------- 112 (344)
T ss_pred eeeeEeccccCCchhhEEee-------ecccccchHhhccccEEEeccccceeeeecccCcccceeeec-----------
Confidence 3457777765543 22222 23444442 125789999999999999886553322211
Q ss_pred ccccccccccceecccccccEEEEEEeecCC-EEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEE
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEV-SIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLS 281 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~-~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~ 281 (512)
.+...|+-+.-.-+.. .+.. ++.|.++++.++........ .....-.+.+++
T Consensus 113 ---------------~snn~v~~~~r~cd~~~~~~i-~sndht~k~~~~~~~s~~~~-----------~h~~~~~~ns~~ 165 (344)
T KOG4532|consen 113 ---------------VSNNDVTLVKRYCDLKFPLNI-ASNDHTGKTMVVSGDSNKFA-----------VHNQNLTQNSLH 165 (344)
T ss_pred ---------------ccccchhhhhhhcccccceee-ccCCcceeEEEEecCcccce-----------eeccccceeeeE
Confidence 1111111111111111 2222 34688888887765443221 111112378899
Q ss_pred eCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce---
Q 010390 282 QDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK--- 358 (512)
Q Consensus 282 ~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~--- 358 (512)
++++++++++.+....|..|.+........... ....+..-.+..|+.....+|++..||++.|||++....+...
T Consensus 166 ~snd~~~~~~Vgds~~Vf~y~id~~sey~~~~~-~a~t~D~gF~~S~s~~~~~FAv~~Qdg~~~I~DVR~~~tpm~~~ss 244 (344)
T KOG4532|consen 166 YSNDPSWGSSVGDSRRVFRYAIDDESEYIENIY-EAPTSDHGFYNSFSENDLQFAVVFQDGTCAIYDVRNMATPMAEISS 244 (344)
T ss_pred EcCCCceEEEecCCCcceEEEeCCccceeeeeE-ecccCCCceeeeeccCcceEEEEecCCcEEEEEecccccchhhhcc
Confidence 999999999999999999999876544433322 2222333445789999999999999999999999876543322
Q ss_pred -eccccCCeEEEEeCCCCCC-eEEEEeCCCcEEEEeCCCCccccccc
Q 010390 359 -LKSHDGEVTAVNWCPNEAG-KIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 359 -~~~h~~~v~~v~~~~~~~~-~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
-..|.+.+..+.|++.|.. +|.-.-.=+.+.+-|+.+++-.+...
T Consensus 245 trp~hnGa~R~c~Fsl~g~lDLLf~sEhfs~~hv~D~R~~~~~q~I~ 291 (344)
T KOG4532|consen 245 TRPHHNGAFRVCRFSLYGLLDLLFISEHFSRVHVVDTRNYVNHQVIV 291 (344)
T ss_pred cCCCCCCceEEEEecCCCcceEEEEecCcceEEEEEcccCceeeEEe
Confidence 2358899999999987643 33333345789999999987666533
No 288
>PRK04043 tolB translocation protein TolB; Provisional
Probab=99.03 E-value=1.8e-07 Score=88.78 Aligned_cols=194 Identities=10% Similarity=0.036 Sum_probs=119.2
Q ss_pred cEEEEEEecCCCE-EEEEeC---CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCC
Q 010390 110 AIFDLCWIKEDTN-ILTASG---DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCK 183 (512)
Q Consensus 110 ~V~~l~~s~~~~~-l~s~~~---dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~ 183 (512)
.+....|+|||+. ++..+. +..|.++|+.+++...... ..+......|+|++..++++.+.++ .|.++|+.++
T Consensus 189 ~~~~p~wSpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~~~lt~-~~g~~~~~~~SPDG~~la~~~~~~g~~~Iy~~dl~~g 267 (419)
T PRK04043 189 LNIFPKWANKEQTAFYYTSYGERKPTLYKYNLYTGKKEKIAS-SQGMLVVSDVSKDGSKLLLTMAPKGQPDIYLYDTNTK 267 (419)
T ss_pred CeEeEEECCCCCcEEEEEEccCCCCEEEEEECCCCcEEEEec-CCCcEEeeEECCCCCEEEEEEccCCCcEEEEEECCCC
Confidence 7788999999985 554333 3569999998886554333 4455667889999966666665554 5666677654
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC--eEEEEeccCccceecccC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS--IVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg--~i~iwd~~~~~~~~~~~~ 261 (512)
.... +..+........|+|||+.++.+....+ .|.+.|+.+++.....
T Consensus 268 ~~~~----------------------------LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt-- 317 (419)
T PRK04043 268 TLTQ----------------------------ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV-- 317 (419)
T ss_pred cEEE----------------------------cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc--
Confidence 3211 1111112334579999999888764444 5777788766543211
Q ss_pred CCccccccccccccCeeEEEeCCCCCEEEEEecC---------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMD---------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d---------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
..+. ....|+|+|+.|+..... ..|.+.|+..... ..+.... ......|+|||
T Consensus 318 --------~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~---~~LT~~~---~~~~p~~SPDG 379 (419)
T PRK04043 318 --------FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYI---RRLTANG---VNQFPRFSSDG 379 (419)
T ss_pred --------cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCe---EECCCCC---CcCCeEECCCC
Confidence 1111 124899999988876643 3678888765432 2222221 11237899999
Q ss_pred CEEEEecCC-C--CEEEEecCCC
Q 010390 333 SHILSGSSD-G--NAYVWQVNKP 352 (512)
Q Consensus 333 ~~l~~g~~d-g--~i~iw~~~~~ 352 (512)
+.|+....+ + .+.+.+++..
T Consensus 380 ~~I~f~~~~~~~~~L~~~~l~g~ 402 (419)
T PRK04043 380 GSIMFIKYLGNQSALGIIRLNYN 402 (419)
T ss_pred CEEEEEEccCCcEEEEEEecCCC
Confidence 988665443 3 3556666543
No 289
>KOG4714 consensus Nucleoporin [Nuclear structure]
Probab=98.97 E-value=6.2e-09 Score=86.10 Aligned_cols=149 Identities=14% Similarity=0.190 Sum_probs=96.2
Q ss_pred CCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe-----cCCeEEEEEcccC
Q 010390 232 EVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC-----MDHRIYLYNVLQL 306 (512)
Q Consensus 232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-----~dg~i~i~d~~~~ 306 (512)
+..+++ +..||.+.+++.+......... ......-.+..+...++.+.++. .-+..+.|+++..
T Consensus 101 ~t~V~~-~~~dg~~~v~s~~~~~~~~~~i----------~~~~~~~as~~~~~~~~~i~s~~~g~~n~~d~~~a~~~~p~ 169 (319)
T KOG4714|consen 101 DNRVCI-GYADGSLAVFSTDKDLALMSRI----------PSIHSGSASRKICRHGNSILSGGCGNWNAQDNFYANTLDPI 169 (319)
T ss_pred CCceEe-cCCCceEEEEechHHHhhhhhc----------ccccccccccceeecccEEecCCcceEeeccceeeeccccc
Confidence 444555 5589999999988732222110 00001111222223444444432 1234555665432
Q ss_pred CCCceEeeeeceeceeEEEEEECCCC-CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 307 DKGPIQHFSGCRIESFYVKSEICPNA-SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~s~~~-~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
...... ......+.+++-+|.. +.+++|+.||.+-+||.+....+...+..|+.+|+.+.|+|..+..|+++++|
T Consensus 170 ~t~~~~----~~~~~~v~~l~~hp~qq~~v~cgt~dg~~~l~d~rn~~~p~S~l~ahk~~i~eV~FHpk~p~~Lft~sed 245 (319)
T KOG4714|consen 170 KTLIPS----KKALDAVTALCSHPAQQHLVCCGTDDGIVGLWDARNVAMPVSLLKAHKAEIWEVHFHPKNPEHLFTCSED 245 (319)
T ss_pred cccccc----ccccccchhhhCCcccccEEEEecCCCeEEEEEcccccchHHHHHHhhhhhhheeccCCCchheeEecCC
Confidence 211111 1111226667778864 55688999999999999998877788999999999999999999999999999
Q ss_pred CcEEEEeCCC
Q 010390 386 YTVRLWSLEN 395 (512)
Q Consensus 386 g~i~vwd~~~ 395 (512)
|.+--||-.+
T Consensus 246 Gslw~wdas~ 255 (319)
T KOG4714|consen 246 GSLWHWDAST 255 (319)
T ss_pred CcEEEEcCCC
Confidence 9999999875
No 290
>TIGR03300 assembly_YfgL outer membrane assembly lipoprotein YfgL. Members of this protein family are YfgL, a lipoprotein component of a complex that acts protein insertion into the bacterial outer membrane. Other members of this complex are NlpB, YfiO, and YaeT. This protein contains multiple copies of a repeat that, in other contexts, are associated with binding of the coenzyme PQQ.
Probab=98.97 E-value=4.8e-07 Score=86.03 Aligned_cols=267 Identities=10% Similarity=0.058 Sum_probs=149.4
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
++..+++++.+|.+..+|.++++..- ... -.+.+.+.-.. .+..++.++.+|.|..||.++|+.+
T Consensus 104 ~~~~v~v~~~~g~l~ald~~tG~~~W-------------~~~-~~~~~~~~p~v-~~~~v~v~~~~g~l~a~d~~tG~~~ 168 (377)
T TIGR03300 104 DGGLVFVGTEKGEVIALDAEDGKELW-------------RAK-LSSEVLSPPLV-ANGLVVVRTNDGRLTALDAATGERL 168 (377)
T ss_pred cCCEEEEEcCCCEEEEEECCCCcEee-------------eec-cCceeecCCEE-ECCEEEEECCCCeEEEEEcCCCcee
Confidence 46678888889999999988775311 111 11222211111 3456777788999999999999887
Q ss_pred ecccCcCCCEE-----EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccc
Q 010390 144 GALMGHTGSIK-----SLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKA 218 (512)
Q Consensus 144 ~~~~~h~~~v~-----~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 218 (512)
..+......+. +.... + ..++.+..+|.+..+|.++++......... ..+. ........
T Consensus 169 W~~~~~~~~~~~~~~~sp~~~--~-~~v~~~~~~g~v~ald~~tG~~~W~~~~~~-------~~g~------~~~~~~~~ 232 (377)
T TIGR03300 169 WTYSRVTPALTLRGSASPVIA--D-GGVLVGFAGGKLVALDLQTGQPLWEQRVAL-------PKGR------TELERLVD 232 (377)
T ss_pred eEEccCCCceeecCCCCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecccc-------CCCC------Cchhhhhc
Confidence 76653322111 11122 2 467778888999999998876543211000 0000 00000000
Q ss_pred ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeE
Q 010390 219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRI 298 (512)
Q Consensus 219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i 298 (512)
. .....+ .+..+++ ++.+|.+..||..+++....... ....... ..+..+++++.+|.+
T Consensus 233 ~---~~~p~~--~~~~vy~-~~~~g~l~a~d~~tG~~~W~~~~-------------~~~~~p~--~~~~~vyv~~~~G~l 291 (377)
T TIGR03300 233 V---DGDPVV--DGGQVYA-VSYQGRVAALDLRSGRVLWKRDA-------------SSYQGPA--VDDNRLYVTDADGVV 291 (377)
T ss_pred c---CCccEE--ECCEEEE-EEcCCEEEEEECCCCcEEEeecc-------------CCccCce--EeCCEEEEECCCCeE
Confidence 0 000111 2344554 44689999999998876654321 0111122 245678888899999
Q ss_pred EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeE-EEEeCCCCCC
Q 010390 299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVT-AVNWCPNEAG 377 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~-~v~~~~~~~~ 377 (512)
..+|..+++. +-...... ......... .+..|++++.+|.|+++|..+++.. ..+..+...+. +..+. + .
T Consensus 292 ~~~d~~tG~~--~W~~~~~~-~~~~ssp~i--~g~~l~~~~~~G~l~~~d~~tG~~~-~~~~~~~~~~~~sp~~~-~--~ 362 (377)
T TIGR03300 292 VALDRRSGSE--LWKNDELK-YRQLTAPAV--VGGYLVVGDFEGYLHWLSREDGSFV-ARLKTDGSGIASPPVVV-G--D 362 (377)
T ss_pred EEEECCCCcE--EEcccccc-CCccccCEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCCccccCCEEE-C--C
Confidence 9999865432 11111100 000111111 3678889999999999999888763 44544443332 22232 3 3
Q ss_pred eEEEEeCCCcEEEE
Q 010390 378 KIVTSSDDYTVRLW 391 (512)
Q Consensus 378 ~l~s~~~dg~i~vw 391 (512)
.|+.++.||.|+.+
T Consensus 363 ~l~v~~~dG~l~~~ 376 (377)
T TIGR03300 363 GLLVQTRDGDLYAF 376 (377)
T ss_pred EEEEEeCCceEEEe
Confidence 68889999998765
No 291
>KOG4190 consensus Uncharacterized conserved protein [Function unknown]
Probab=98.95 E-value=2.5e-09 Score=97.60 Aligned_cols=227 Identities=13% Similarity=0.186 Sum_probs=152.9
Q ss_pred eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
++.+.+|...|..++-..+. +-+++++.|.+|++|.++....... ..........|..+
T Consensus 728 L~nf~GH~~~iRai~AidNE-NSFiSASkDKTVKLWSik~EgD~~~--------------------tsaCQfTY~aHkk~ 786 (1034)
T KOG4190|consen 728 LCNFTGHQEKIRAIAAIDNE-NSFISASKDKTVKLWSIKPEGDEIG--------------------TSACQFTYQAHKKP 786 (1034)
T ss_pred eecccCcHHHhHHHHhcccc-cceeeccCCceEEEEEeccccCccc--------------------cceeeeEhhhccCc
Confidence 56678899988887655444 8899999999999999975432111 12234467789999
Q ss_pred EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEE-ecCCeEEEE
Q 010390 223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTAS-CMDHRIYLY 301 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~-~~dg~i~i~ 301 (512)
|.++.|..+.+.+++ .||.|.+||.--++......... ..+..+.|.++.-- +...++.+ +...+|+++
T Consensus 787 i~~igfL~~lr~i~S---cD~giHlWDPFigr~Laq~~dap------k~~a~~~ikcl~nv-~~~iliAgcsaeSTVKl~ 856 (1034)
T KOG4190|consen 787 IHDIGFLADLRSIAS---CDGGIHLWDPFIGRLLAQMEDAP------KEGAGGNIKCLENV-DRHILIAGCSAESTVKLF 856 (1034)
T ss_pred ccceeeeeccceeee---ccCcceeecccccchhHhhhcCc------ccCCCceeEecccC-cchheeeeccchhhheee
Confidence 999999999888876 38999999987666554332111 11222233333221 33344444 678899999
Q ss_pred EcccCCCCceEeee-eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEE
Q 010390 302 NVLQLDKGPIQHFS-GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIV 380 (512)
Q Consensus 302 d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~ 380 (512)
|.+..+...-.... ....+..+.+++..+.|++++++-.+|.|.+.|.++++. +...+..+-....++- |.+ +.|+
T Consensus 857 DaRsce~~~E~kVcna~~Pna~~R~iaVa~~GN~lAa~LSnGci~~LDaR~G~v-INswrpmecdllqlaa-psd-q~L~ 933 (1034)
T KOG4190|consen 857 DARSCEWTCELKVCNAPGPNALTRAIAVADKGNKLAAALSNGCIAILDARNGKV-INSWRPMECDLLQLAA-PSD-QALA 933 (1034)
T ss_pred ecccccceeeEEeccCCCCchheeEEEeccCcchhhHHhcCCcEEEEecCCCce-eccCCcccchhhhhcC-chh-HHHH
Confidence 98765443322222 222335677899999999999999999999999998875 2334433434444433 444 6888
Q ss_pred EEeCCCcEEE-EeCCCCccccccc
Q 010390 381 TSSDDYTVRL-WSLENSRCSSMRS 403 (512)
Q Consensus 381 s~~~dg~i~v-wd~~~~~~~~~~~ 403 (512)
....|.++.+ |...+|.......
T Consensus 934 ~saldHslaVnWhaldgimh~q~k 957 (1034)
T KOG4190|consen 934 QSALDHSLAVNWHALDGIMHLQDK 957 (1034)
T ss_pred hhcccceeEeeehhcCCeeeeccC
Confidence 8888999999 9888877655433
No 292
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.95 E-value=1.9e-08 Score=89.80 Aligned_cols=264 Identities=12% Similarity=0.113 Sum_probs=174.8
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
|.+.|+.|.. + -.+++.+++.||.++.|.-..-. ....+..+..|...|.+++.+-++..+.|.+.
T Consensus 8 hrd~i~hv~~---t-ka~fiiqASlDGh~KFWkKs~is----------GvEfVKhFraHL~~I~sl~~S~dg~L~~Sv~d 73 (558)
T KOG0882|consen 8 HRDVITHVFP---T-KAKFIIQASLDGHKKFWKKSRIS----------GVEFVKHFRAHLGVILSLAVSYDGWLFRSVED 73 (558)
T ss_pred ccceeeeEee---e-hhheEEeeecchhhhhcCCCCcc----------ceeehhhhHHHHHHHHhhhccccceeEeeccC
Confidence 7777777765 2 35799999999999999754311 12336677889999999999999999999777
Q ss_pred -CCcEEEEeCCCCeeeeccc--CcCCCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 129 -DQTIKIWDAEKKKCTGALM--GHTGSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 129 -dg~i~iwd~~~~~~~~~~~--~h~~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
|..++++|+++-..+.-++ ...+.+..+ .++.+. .+-++.-.++.+.++|-....+....
T Consensus 74 ~Dhs~KvfDvEn~DminmiKL~~lPg~a~wv-~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~~~-------------- 138 (558)
T KOG0882|consen 74 PDHSVKVFDVENFDMINMIKLVDLPGFAEWV-TSKGDKISLIAVSLFKSGKIFVVDGFGDFCQDGY-------------- 138 (558)
T ss_pred cccceeEEEeeccchhhhcccccCCCceEEe-cCCCCeeeeEEeecccCCCcEEECCcCCcCccce--------------
Confidence 9999999998765443222 222333222 222211 22333345789999997755432211
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC-c---cceecccCCCccccccccccccCeeE
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN-L---KAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~-~---~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
....|..+|.++.+++.+..+++ ....|.|..|.... . +........+...............+
T Consensus 139 -----------fkklH~sPV~~i~y~qa~Ds~vS-iD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts 206 (558)
T KOG0882|consen 139 -----------FKKLHFSPVKKIRYNQAGDSAVS-IDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTS 206 (558)
T ss_pred -----------ecccccCceEEEEeeccccceee-ccccceeEeecCCCcccCccccccccccccchhhcccccccCccc
Confidence 33467789999999999988876 44689999998873 1 11111222222222234455667899
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceE---------------eeeec--------------eeceeEEEEEECC
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQ---------------HFSGC--------------RIESFYVKSEICP 330 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~---------------~~~~~--------------~~~~~~~~~~~s~ 330 (512)
+.|+|++..+.+-+.|..|++++..++...... .+... ......+.+.|..
T Consensus 207 ~Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fde 286 (558)
T KOG0882|consen 207 FEFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDE 286 (558)
T ss_pred eEEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcC
Confidence 999999999999999999999997654321100 00000 0111234578999
Q ss_pred CCCEEEEecCCCCEEEEecCCCCC
Q 010390 331 NASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
.+++|+-|+-=| |++.++.+...
T Consensus 287 s~~flly~t~~g-ikvin~~tn~v 309 (558)
T KOG0882|consen 287 SGNFLLYGTILG-IKVINLDTNTV 309 (558)
T ss_pred CCCEEEeeccee-EEEEEeecCeE
Confidence 999999998777 88888877543
No 293
>COG4946 Uncharacterized protein related to the periplasmic component of the Tol biopolymer transport system [Function unknown]
Probab=98.93 E-value=3.6e-07 Score=82.39 Aligned_cols=120 Identities=13% Similarity=0.178 Sum_probs=96.6
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCC-cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEE
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDG-YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTA 126 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~ 126 (512)
||.+. |.+..+..+++-++.|..|| .+-|+|.++++ +..+...-+.|.++..+++|++++.+
T Consensus 357 ~~~~~---VrY~r~~~~~e~~vigt~dgD~l~iyd~~~~e--------------~kr~e~~lg~I~av~vs~dGK~~vva 419 (668)
T COG4946 357 GKKGG---VRYRRIQVDPEGDVIGTNDGDKLGIYDKDGGE--------------VKRIEKDLGNIEAVKVSPDGKKVVVA 419 (668)
T ss_pred CCCCc---eEEEEEccCCcceEEeccCCceEEEEecCCce--------------EEEeeCCccceEEEEEcCCCcEEEEE
Confidence 45555 45555588888899999999 89999998764 45556677899999999999999999
Q ss_pred eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC----cEEEEeCCCCCC
Q 010390 127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG----SFAIWDLRCKSS 185 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg----~i~vwd~~~~~~ 185 (512)
.....|.+.|++++.....=+...+-|+.+.|+|++ .++|-+--+| .|+++|+.+++.
T Consensus 420 Ndr~el~vididngnv~~idkS~~~lItdf~~~~ns-r~iAYafP~gy~tq~Iklydm~~~Ki 481 (668)
T COG4946 420 NDRFELWVIDIDNGNVRLIDKSEYGLITDFDWHPNS-RWIAYAFPEGYYTQSIKLYDMDGGKI 481 (668)
T ss_pred cCceEEEEEEecCCCeeEecccccceeEEEEEcCCc-eeEEEecCcceeeeeEEEEecCCCeE
Confidence 988999999999998765555566789999999987 7888766554 689999987653
No 294
>PRK04043 tolB translocation protein TolB; Provisional
Probab=98.91 E-value=3.1e-07 Score=87.25 Aligned_cols=191 Identities=10% Similarity=0.010 Sum_probs=113.8
Q ss_pred CcceEEEEEecCCCcE-EEEeeC---CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEE-E
Q 010390 52 PPLAVSFCKTSKNSHI-FAVSDE---DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILT-A 126 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~-latg~~---dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s-~ 126 (512)
....-.| ||||+. ++..+. +..|.++|+.+++. ..+. ...+......|+|||+.|+. .
T Consensus 189 ~~~~p~w---SpDG~~~i~y~s~~~~~~~Iyv~dl~tg~~-----------~~lt---~~~g~~~~~~~SPDG~~la~~~ 251 (419)
T PRK04043 189 LNIFPKW---ANKEQTAFYYTSYGERKPTLYKYNLYTGKK-----------EKIA---SSQGMLVVSDVSKDGSKLLLTM 251 (419)
T ss_pred CeEeEEE---CCCCCcEEEEEEccCCCCEEEEEECCCCcE-----------EEEe---cCCCcEEeeEECCCCCEEEEEE
Confidence 3444555 999984 665433 35688889877642 2222 24455667889999988774 3
Q ss_pred eC--CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 127 SG--DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 127 ~~--dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
+. +..|.++|+.+++... +..+........|+|++..++++....+ .|.+.|+.+++.....
T Consensus 252 ~~~g~~~Iy~~dl~~g~~~~-LT~~~~~d~~p~~SPDG~~I~F~Sdr~g~~~Iy~~dl~~g~~~rlt------------- 317 (419)
T PRK04043 252 APKGQPDIYLYDTNTKTLTQ-ITNYPGIDVNGNFVEDDKRIVFVSDRLGYPNIFMKKLNSGSVEQVV------------- 317 (419)
T ss_pred ccCCCcEEEEEECCCCcEEE-cccCCCccCccEECCCCCEEEEEECCCCCceEEEEECCCCCeEeCc-------------
Confidence 33 3568888987776433 4333333345679999955555554444 4666677654431110
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecC--------CeEEEEeccCccceecccCCCccccccccccc
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--------SIVKFWDTRNLKAQITQAWPHAESSSAKETRL 274 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--------g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~ 274 (512)
..+. ....|+|+|+.++.+...+ ..|.+.|+.++..... ...
T Consensus 318 -------------~~g~----~~~~~SPDG~~Ia~~~~~~~~~~~~~~~~I~v~d~~~g~~~~L------------T~~- 367 (419)
T PRK04043 318 -------------FHGK----NNSSVSTYKNYIVYSSRETNNEFGKNTFNLYLISTNSDYIRRL------------TAN- 367 (419)
T ss_pred -------------cCCC----cCceECCCCCEEEEEEcCCCcccCCCCcEEEEEECCCCCeEEC------------CCC-
Confidence 0010 1238999999998876443 3678888877653321 111
Q ss_pred cCeeEEEeCCCCCEEEEEecC-C--eEEEEEc
Q 010390 275 HGISSLSQDSNGVFLTASCMD-H--RIYLYNV 303 (512)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~d-g--~i~i~d~ 303 (512)
.......|+|||+.++....+ + .+.+.++
T Consensus 368 ~~~~~p~~SPDG~~I~f~~~~~~~~~L~~~~l 399 (419)
T PRK04043 368 GVNQFPRFSSDGGSIMFIKYLGNQSALGIIRL 399 (419)
T ss_pred CCcCCeEECCCCCEEEEEEccCCcEEEEEEec
Confidence 123358899999988766543 2 3455555
No 295
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.91 E-value=7e-09 Score=89.32 Aligned_cols=155 Identities=12% Similarity=0.174 Sum_probs=110.1
Q ss_pred EEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee
Q 010390 236 ATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS 315 (512)
Q Consensus 236 ~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 315 (512)
+++| .+..|-+-|+.++.... ......|.++.|...+.++..|+.+|.|..+|++...........
T Consensus 228 fs~G-~sqqv~L~nvetg~~qs-------------f~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~~~~a~ 293 (425)
T KOG2695|consen 228 FSVG-LSQQVLLTNVETGHQQS-------------FQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGNGWCAQ 293 (425)
T ss_pred eccc-ccceeEEEEeecccccc-------------cccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCCCcceE
Confidence 4445 57788888888875432 224567999999999999999999999999999876433222222
Q ss_pred eceeceeEEEEEECC-CCCEEEEecCCCCEEEEecCCCCC--CCceeccccCCeEEE--EeCCCCCCeEEEEeCCCcEEE
Q 010390 316 GCRIESFYVKSEICP-NASHILSGSSDGNAYVWQVNKPQA--DPIKLKSHDGEVTAV--NWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 316 ~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~~~~~~~--~~~~~~~h~~~v~~v--~~~~~~~~~l~s~~~dg~i~v 390 (512)
..-+.+.++++..-. ++++|++.+.+|.|.+||++-.++ .+..+.+|-..-.-+ ...+.. ..++++|+|...||
T Consensus 294 rlyh~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~V~qYeGHvN~~a~l~~~v~~ee-g~I~s~GdDcytRi 372 (425)
T KOG2695|consen 294 RLYHDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKSVMQYEGHVNLSAYLPAHVKEEE-GSIFSVGDDCYTRI 372 (425)
T ss_pred EEEcCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccceeeeeccccccccccccccccc-ceEEEccCeeEEEE
Confidence 222233455555544 678999999999999999986554 245677774432222 234445 68999999999999
Q ss_pred EeCCCCcccccccCc
Q 010390 391 WSLENSRCSSMRSPS 405 (512)
Q Consensus 391 wd~~~~~~~~~~~~~ 405 (512)
|.+..|.++.+....
T Consensus 373 Wsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 373 WSLDSGHLLCTIPFP 387 (425)
T ss_pred EecccCceeeccCCC
Confidence 999999988875543
No 296
>KOG0882 consensus Cyclophilin-related peptidyl-prolyl cis-trans isomerase [Posttranslational modification, protein turnover, chaperones]
Probab=98.90 E-value=3.6e-08 Score=88.06 Aligned_cols=259 Identities=12% Similarity=0.053 Sum_probs=177.7
Q ss_pred cCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCC--C-eeeecccCcCCCEEEEEeeCCCCCeEEEEeC-CCcEEEEeCC
Q 010390 106 AHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEK--K-KCTGALMGHTGSIKSLCSHPTNSDILVSGSR-DGSFAIWDLR 181 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~--~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-dg~i~vwd~~ 181 (512)
-|...|+.+.-. -.+++.+++.||.++.|.-.. + +.+..+..|...|.+++.+-++ .++.+.+. |..++++|++
T Consensus 7 mhrd~i~hv~~t-ka~fiiqASlDGh~KFWkKs~isGvEfVKhFraHL~~I~sl~~S~dg-~L~~Sv~d~Dhs~KvfDvE 84 (558)
T KOG0882|consen 7 MHRDVITHVFPT-KAKFIIQASLDGHKKFWKKSRISGVEFVKHFRAHLGVILSLAVSYDG-WLFRSVEDPDHSVKVFDVE 84 (558)
T ss_pred cccceeeeEeee-hhheEEeeecchhhhhcCCCCccceeehhhhHHHHHHHHhhhccccc-eeEeeccCcccceeEEEee
Confidence 377777776654 567899999999999997543 2 4455667888899999998887 88899787 9999999998
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee-cC---CEEEEEeecCCeEEEEeccCcccee
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK-DE---VSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~---~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
+-.......... ....+.|.. .| ..++++...++.+.++|-....+..
T Consensus 85 n~DminmiKL~~----------------------------lPg~a~wv~skGd~~s~IAVs~~~sg~i~VvD~~~d~~q~ 136 (558)
T KOG0882|consen 85 NFDMINMIKLVD----------------------------LPGFAEWVTSKGDKISLIAVSLFKSGKIFVVDGFGDFCQD 136 (558)
T ss_pred ccchhhhccccc----------------------------CCCceEEecCCCCeeeeEEeecccCCCcEEECCcCCcCcc
Confidence 765443221111 111122211 11 1345555578899999987665433
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc----eEe-------eeeceeceeEEEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP----IQH-------FSGCRIESFYVKS 326 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~----~~~-------~~~~~~~~~~~~~ 326 (512)
.. ....|..+|..+.+.+.+..+++....|.|..|.....-+.+ ... +..........++
T Consensus 137 ~~---------fkklH~sPV~~i~y~qa~Ds~vSiD~~gmVEyWs~e~~~qfPr~~l~~~~K~eTdLy~f~K~Kt~pts~ 207 (558)
T KOG0882|consen 137 GY---------FKKLHFSPVKKIRYNQAGDSAVSIDISGMVEYWSAEGPFQFPRTNLNFELKHETDLYGFPKAKTEPTSF 207 (558)
T ss_pred ce---------ecccccCceEEEEeeccccceeeccccceeEeecCCCcccCccccccccccccchhhcccccccCccce
Confidence 22 456778899999999999999999999999999976311111 001 1111223446679
Q ss_pred EECCCCCEEEEecCCCCEEEEecCCCCCCCc-------------------------------eeccccC-CeEEEEeCCC
Q 010390 327 EICPNASHILSGSSDGNAYVWQVNKPQADPI-------------------------------KLKSHDG-EVTAVNWCPN 374 (512)
Q Consensus 327 ~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~-------------------------------~~~~h~~-~v~~v~~~~~ 374 (512)
.|+|++..+.+-+.|..|+++++.+++.... .+..|.. .-+.+.|...
T Consensus 208 Efsp~g~qistl~~DrkVR~F~~KtGklvqeiDE~~t~~~~q~ks~y~l~~VelgRRmaverelek~~~~~~~~~~fdes 287 (558)
T KOG0882|consen 208 EFSPDGAQISTLNPDRKVRGFVFKTGKLVQEIDEVLTDAQYQPKSPYGLMHVELGRRMAVERELEKHGSTVGTNAVFDES 287 (558)
T ss_pred EEccccCcccccCcccEEEEEEeccchhhhhhhccchhhhhccccccccceeehhhhhhHHhhHhhhcCcccceeEEcCC
Confidence 9999999999999999999999987643110 0111222 2345668777
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCcccccccCc
Q 010390 375 EAGKIVTSSDDYTVRLWSLENSRCSSMRSPS 405 (512)
Q Consensus 375 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~ 405 (512)
+ ++|+-++-=| |+|.++.++++.+.+-..
T Consensus 288 ~-~flly~t~~g-ikvin~~tn~v~ri~gk~ 316 (558)
T KOG0882|consen 288 G-NFLLYGTILG-IKVINLDTNTVVRILGKD 316 (558)
T ss_pred C-CEEEeeccee-EEEEEeecCeEEEEeccc
Confidence 7 7888887766 999999999988875433
No 297
>KOG3914 consensus WD repeat protein WDR4 [Function unknown]
Probab=98.90 E-value=3.1e-08 Score=87.28 Aligned_cols=158 Identities=16% Similarity=0.261 Sum_probs=107.5
Q ss_pred ecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEE---EEeCCCcEEEEeC
Q 010390 61 TSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNIL---TASGDQTIKIWDA 137 (512)
Q Consensus 61 ~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~---s~~~dg~i~iwd~ 137 (512)
.++++++||++..+....++++...... .+.+... .-...-+++.|..+..... .++....+.+|+.
T Consensus 70 ~s~~~~llAv~~~~K~~~~f~~~~~~~~---------~kl~~~~-~v~~~~~ai~~~~~~~sv~v~dkagD~~~~di~s~ 139 (390)
T KOG3914|consen 70 TSDSGRLVAVATSSKQRAVFDYRENPKG---------AKLLDVS-CVPKRPTAISFIREDTSVLVADKAGDVYSFDILSA 139 (390)
T ss_pred cCCCceEEEEEeCCCceEEEEEecCCCc---------ceeeeEe-ecccCcceeeeeeccceEEEEeecCCceeeeeecc
Confidence 3899999999988888778877654220 0111111 1122333444444444443 3445566777776
Q ss_pred CCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc
Q 010390 138 EKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK 217 (512)
Q Consensus 138 ~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 217 (512)
..+. ...+.+|-..++.++|+|++ .+++++..|..|++-..........+ ..
T Consensus 140 ~~~~-~~~~lGhvSml~dVavS~D~-~~IitaDRDEkIRvs~ypa~f~Iesf--------------------------cl 191 (390)
T KOG3914|consen 140 DSGR-CEPILGHVSMLLDVAVSPDD-QFIITADRDEKIRVSRYPATFVIESF--------------------------CL 191 (390)
T ss_pred cccC-cchhhhhhhhhheeeecCCC-CEEEEecCCceEEEEecCcccchhhh--------------------------cc
Confidence 6643 44566899999999999998 99999999999999877654433322 33
Q ss_pred cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceec
Q 010390 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQIT 258 (512)
Q Consensus 218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~ 258 (512)
+|...|..++.-++.. |++ |+-|++|++||+.+++.+.+
T Consensus 192 GH~eFVS~isl~~~~~-LlS-~sGD~tlr~Wd~~sgk~L~t 230 (390)
T KOG3914|consen 192 GHKEFVSTISLTDNYL-LLS-GSGDKTLRLWDITSGKLLDT 230 (390)
T ss_pred ccHhheeeeeeccCce-eee-cCCCCcEEEEecccCCcccc
Confidence 7888899999876654 555 44699999999999987754
No 298
>KOG0309 consensus Conserved WD40 repeat-containing protein [Function unknown]
Probab=98.90 E-value=8.6e-09 Score=97.46 Aligned_cols=226 Identities=18% Similarity=0.237 Sum_probs=151.4
Q ss_pred eeeeeeEeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE
Q 010390 37 TEIGAVTVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC 115 (512)
Q Consensus 37 ~~~~~~~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~ 115 (512)
.....+-+.++||...|+.+.| +|.. ..||+++.|-.|..||+.... .++..+..-......++
T Consensus 101 ss~~aIef~lhghsraitd~n~---~~q~pdVlatcsvdt~vh~wd~rSp~------------~p~ys~~~w~s~asqVk 165 (1081)
T KOG0309|consen 101 SSSNAIEFVLHGHSRAITDINF---NPQHPDVLATCSVDTYVHAWDMRSPH------------RPFYSTSSWRSAASQVK 165 (1081)
T ss_pred CCccceEEEEecCccceecccc---CCCCCcceeeccccccceeeeccCCC------------cceeeeecccccCceee
Confidence 3445677889999999999999 4433 589999999999999997653 33444555556778899
Q ss_pred EecCCCEEEEEeCCCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccce
Q 010390 116 WIKEDTNILTASGDQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESF 194 (512)
Q Consensus 116 ~s~~~~~l~s~~~dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~ 194 (512)
|+-....+++.+..+.|++||...| .++..+++|...|+.+.|.......+.+++.||+|+.||.........
T Consensus 166 wnyk~p~vlasshg~~i~vwd~r~gs~pl~s~K~~vs~vn~~~fnr~~~s~~~s~~~d~tvkfw~y~kSt~e~~------ 239 (1081)
T KOG0309|consen 166 WNYKDPNVLASSHGNDIFVWDLRKGSTPLCSLKGHVSSVNSIDFNRFKYSEIMSSSNDGTVKFWDYSKSTTESK------ 239 (1081)
T ss_pred ecccCcchhhhccCCceEEEeccCCCcceEEecccceeeehHHHhhhhhhhhcccCCCCceeeecccccccccc------
Confidence 9885555655667778999999876 567888999999999999876556899999999999999875433221
Q ss_pred eeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeec-CCeEEEEeccCccceecccCCCcccccccccc
Q 010390 195 VFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAV-NSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 195 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
....-..++..-.+.|-|...++--.. +..+.+++.++....... .....+...+.+|
T Consensus 240 --------------------~~vtt~~piw~~r~~Pfg~g~~~mp~~G~n~v~~~~c~n~d~e~n~-~~~~~pVh~F~GH 298 (1081)
T KOG0309|consen 240 --------------------RTVTTNFPIWRGRYLPFGEGYCIMPMVGGNMVPQLRCENSDLEWNV-FDLNTPVHTFVGH 298 (1081)
T ss_pred --------------------eeccccCcceeccccccCceeEeccccCCeeeeeccccchhhhhcc-ccCCcceeeecCc
Confidence 111223456666666655543321111 224444544433222111 1111222256777
Q ss_pred ccCeeEEEeCCC----------CCEEEEEecCCeEEEEEcc
Q 010390 274 LHGISSLSQDSN----------GVFLTASCMDHRIYLYNVL 304 (512)
Q Consensus 274 ~~~i~~~~~~~~----------~~~l~~~~~dg~i~i~d~~ 304 (512)
...|....|-.. .-.|++=+.|..+++|-+.
T Consensus 299 ~D~V~eFlWR~r~e~~~d~d~rdfQLVTWSkD~~lrlWpI~ 339 (1081)
T KOG0309|consen 299 DDVVLEFLWRKRKECDGDYDSRDFQLVTWSKDQTLRLWPID 339 (1081)
T ss_pred chHHHHHhhhhcccccCCCCccceeEEEeecCCceEeeecc
Confidence 777766655332 2379999999999999863
No 299
>PF15492 Nbas_N: Neuroblastoma-amplified sequence, N terminal
Probab=98.85 E-value=3.6e-06 Score=71.54 Aligned_cols=233 Identities=13% Similarity=0.142 Sum_probs=133.5
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCC--eeeec---ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390 114 LCWIKEDTNILTASGDQTIKIWDAEKK--KCTGA---LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 114 l~~s~~~~~l~s~~~dg~i~iwd~~~~--~~~~~---~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 188 (512)
++.+.+|+.||.- .|..|.|-..++. .++.. -+.....-..++|+|++ .+||.+...|+|+++|+........
T Consensus 3 ~~~~~~Gk~lAi~-qd~~iEiRsa~Ddf~si~~kcqVpkD~~PQWRkl~WSpD~-tlLa~a~S~G~i~vfdl~g~~lf~I 80 (282)
T PF15492_consen 3 LALSSDGKLLAIL-QDQCIEIRSAKDDFSSIIGKCQVPKDPNPQWRKLAWSPDC-TLLAYAESTGTIRVFDLMGSELFVI 80 (282)
T ss_pred eeecCCCcEEEEE-eccEEEEEeccCCchheeEEEecCCCCCchheEEEECCCC-cEEEEEcCCCeEEEEecccceeEEc
Confidence 4556788877755 6777888766543 12222 22223345779999998 8999999999999999986443211
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecC------CEEEEEeecCCeEEEEeccCcc-----cee
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDE------VSIATASAVNSIVKFWDTRNLK-----AQI 257 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~------~~l~~~g~~dg~i~iwd~~~~~-----~~~ 257 (512)
..... ........|..+.|.+.. ..+++.. .+|.++-|-+..+. ...
T Consensus 81 ~p~~~---------------------~~~d~~~Aiagl~Fl~~~~s~~ws~ELlvi~-Y~G~L~Sy~vs~gt~q~y~e~h 138 (282)
T PF15492_consen 81 PPAMS---------------------FPGDLSDAIAGLIFLEYKKSAQWSYELLVIN-YRGQLRSYLVSVGTNQGYQENH 138 (282)
T ss_pred Ccccc---------------------cCCccccceeeeEeeccccccccceeEEEEe-ccceeeeEEEEcccCCcceeeE
Confidence 11000 000123456666665432 2344434 57777777653321 111
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe-----------EEEEEcccCCCCceEeeeeceeceeEEEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR-----------IYLYNVLQLDKGPIQHFSGCRIESFYVKS 326 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~-----------i~i~d~~~~~~~~~~~~~~~~~~~~~~~~ 326 (512)
.+. .......+|.++.++|..++|++|+.... +..|.+-
T Consensus 139 sfs--------f~~~yp~Gi~~~vy~p~h~LLlVgG~~~~~~~~s~a~~~GLtaWRiL---------------------- 188 (282)
T PF15492_consen 139 SFS--------FSSHYPHGINSAVYHPKHRLLLVGGCEQNQDGMSKASSCGLTAWRIL---------------------- 188 (282)
T ss_pred EEE--------ecccCCCceeEEEEcCCCCEEEEeccCCCCCccccccccCceEEEEc----------------------
Confidence 110 11223568999999999998888874422 1112111
Q ss_pred EECCCCCEEEEecCCCC------EEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 327 EICPNASHILSGSSDGN------AYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 327 ~~s~~~~~l~~g~~dg~------i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
.-+|..+.+ +...|+. -.+|.+-+.+.. .........|..+..+||| ..||+...+|.|.+|++.+-++..
T Consensus 189 ~~~Pyyk~v-~~~~~~~~~~~~~~~~~~~~~~~~f-s~~~~~~d~i~kmSlSPdg-~~La~ih~sG~lsLW~iPsL~~~~ 265 (282)
T PF15492_consen 189 SDSPYYKQV-TSSEDDITASSKRRGLLRIPSFKFF-SRQGQEQDGIFKMSLSPDG-SLLACIHFSGSLSLWEIPSLRLQR 265 (282)
T ss_pred CCCCcEEEc-cccCccccccccccceeeccceeee-eccccCCCceEEEEECCCC-CEEEEEEcCCeEEEEecCcchhhc
Confidence 111222221 1222221 123333221110 1112245689999999999 899999999999999999887776
Q ss_pred ccc
Q 010390 401 MRS 403 (512)
Q Consensus 401 ~~~ 403 (512)
...
T Consensus 266 ~W~ 268 (282)
T PF15492_consen 266 SWK 268 (282)
T ss_pred ccc
Confidence 544
No 300
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.84 E-value=1.1e-07 Score=92.51 Aligned_cols=194 Identities=14% Similarity=0.199 Sum_probs=136.2
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
++..+..|+-...+..+|+++... .+...-..+.|+-|+. +++++.+|...|+|.+-|.++.+.+
T Consensus 146 ~~~~~i~Gg~Q~~li~~Dl~~~~e-------------~r~~~v~a~~v~imR~--Nnr~lf~G~t~G~V~LrD~~s~~~i 210 (1118)
T KOG1275|consen 146 GPSTLIMGGLQEKLIHIDLNTEKE-------------TRTTNVSASGVTIMRY--NNRNLFCGDTRGTVFLRDPNSFETI 210 (1118)
T ss_pred CCcceeecchhhheeeeeccccee-------------eeeeeccCCceEEEEe--cCcEEEeecccceEEeecCCcCcee
Confidence 345566666666777777765432 2222222334666654 6788888888999999999888889
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
+++..|.+.|..+... | ++|+++|..+ +.+.+
T Consensus 211 ht~~aHs~siSDfDv~--G-NlLitCG~S~--R~~~l------------------------------------------- 242 (1118)
T KOG1275|consen 211 HTFDAHSGSISDFDVQ--G-NLLITCGYSM--RRYNL------------------------------------------- 242 (1118)
T ss_pred eeeeccccceeeeecc--C-CeEEEeeccc--ccccc-------------------------------------------
Confidence 9999999888876654 5 7888888643 22111
Q ss_pred EEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEE
Q 010390 224 TSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYN 302 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d 302 (512)
+ .|.-|++||++..+.+.-...+. ...-+.|+|. ...+++++..|...+-|
T Consensus 243 ------------~----~D~FvkVYDLRmmral~PI~~~~------------~P~flrf~Psl~t~~~V~S~sGq~q~vd 294 (1118)
T KOG1275|consen 243 ------------A----MDPFVKVYDLRMMRALSPIQFPY------------GPQFLRFHPSLTTRLAVTSQSGQFQFVD 294 (1118)
T ss_pred ------------c----ccchhhhhhhhhhhccCCccccc------------CchhhhhcccccceEEEEecccceeecc
Confidence 1 37889999999877654322111 1234566664 35788888999999999
Q ss_pred cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEe
Q 010390 303 VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 303 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~ 348 (512)
.......+.....-+.....+..+++|++++.++.|..+|.|.+|.
T Consensus 295 ~~~lsNP~~~~~~v~p~~s~i~~fDiSsn~~alafgd~~g~v~~wa 340 (1118)
T KOG1275|consen 295 TATLSNPPAGVKMVNPNGSGISAFDISSNGDALAFGDHEGHVNLWA 340 (1118)
T ss_pred ccccCCCccceeEEccCCCcceeEEecCCCceEEEecccCcEeeec
Confidence 6555555555666666667788999999999999999999999997
No 301
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=8.2e-06 Score=72.41 Aligned_cols=228 Identities=11% Similarity=0.016 Sum_probs=136.8
Q ss_pred EEEEec-CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 113 DLCWIK-EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 113 ~l~~s~-~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
++.|.+ ++.++++--..+.|..|+..+++... +... ....+++...+ ..|+.+..+ .+.++|..+++.......
T Consensus 4 gp~~d~~~g~l~~~D~~~~~i~~~~~~~~~~~~-~~~~--~~~G~~~~~~~-g~l~v~~~~-~~~~~d~~~g~~~~~~~~ 78 (246)
T PF08450_consen 4 GPVWDPRDGRLYWVDIPGGRIYRVDPDTGEVEV-IDLP--GPNGMAFDRPD-GRLYVADSG-GIAVVDPDTGKVTVLADL 78 (246)
T ss_dssp EEEEETTTTEEEEEETTTTEEEEEETTTTEEEE-EESS--SEEEEEEECTT-SEEEEEETT-CEEEEETTTTEEEEEEEE
T ss_pred ceEEECCCCEEEEEEcCCCEEEEEECCCCeEEE-EecC--CCceEEEEccC-CEEEEEEcC-ceEEEecCCCcEEEEeec
Confidence 578888 66666676678999999998876543 2212 27778888334 445555554 456668776532111000
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC-------CeEEEEeccCccceecccCCCc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN-------SIVKFWDTRNLKAQITQAWPHA 264 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d-------g~i~iwd~~~~~~~~~~~~~~~ 264 (512)
..........+.+++.++|...++..... |.|..++.. ++...
T Consensus 79 ----------------------~~~~~~~~~~ND~~vd~~G~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~~~------- 128 (246)
T PF08450_consen 79 ----------------------PDGGVPFNRPNDVAVDPDGNLYVTDSGGGGASGIDPGSVYRIDPD-GKVTV------- 128 (246)
T ss_dssp ----------------------ETTCSCTEEEEEEEE-TTS-EEEEEECCBCTTCGGSEEEEEEETT-SEEEE-------
T ss_pred ----------------------cCCCcccCCCceEEEcCCCCEEEEecCCCccccccccceEEECCC-CeEEE-------
Confidence 00001345788999999999666533211 557777777 33221
Q ss_pred cccccccccccCeeEEEeCCCCCEEE-EEecCCeEEEEEcccCCCCc--eEeeee-ceeceeEEEEEECCCCCEEEEecC
Q 010390 265 ESSSAKETRLHGISSLSQDSNGVFLT-ASCMDHRIYLYNVLQLDKGP--IQHFSG-CRIESFYVKSEICPNASHILSGSS 340 (512)
Q Consensus 265 ~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~~~--~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~ 340 (512)
........+.++|+|+++.|+ +-+..+.|..|++....... ...+.. .......-.+++..+|++.++...
T Consensus 129 -----~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~g~pDG~~vD~~G~l~va~~~ 203 (246)
T PF08450_consen 129 -----VADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFIDFPGGPGYPDGLAVDSDGNLWVADWG 203 (246)
T ss_dssp -----EEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEEE-SSSSCEEEEEEEBTTS-EEEEEET
T ss_pred -----EecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEEEcCCCCcCCCcceEcCCCCEEEEEcC
Confidence 222345578999999999776 45577899999986433211 122211 111123566899999998888777
Q ss_pred CCCEEEEecCCCCCCCceeccccCCeEEEEeC-CCCCCeEEEE
Q 010390 341 DGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC-PNEAGKIVTS 382 (512)
Q Consensus 341 dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-~~~~~~l~s~ 382 (512)
.+.|.+++.+ ++. ...+.-....+++++|. ++...+++|.
T Consensus 204 ~~~I~~~~p~-G~~-~~~i~~p~~~~t~~~fgg~~~~~L~vTt 244 (246)
T PF08450_consen 204 GGRIVVFDPD-GKL-LREIELPVPRPTNCAFGGPDGKTLYVTT 244 (246)
T ss_dssp TTEEEEEETT-SCE-EEEEE-SSSSEEEEEEESTTSSEEEEEE
T ss_pred CCEEEEECCC-ccE-EEEEcCCCCCEEEEEEECCCCCEEEEEe
Confidence 8899999987 443 23333334589999994 5553455554
No 302
>PF08450 SGL: SMP-30/Gluconolaconase/LRE-like region; InterPro: IPR013658 This family describes a region that is found in proteins expressed by a variety of eukaryotic and prokaryotic species. These proteins include various enzymes, such as senescence marker protein 30 (SMP-30, Q15493 from SWISSPROT), gluconolactonase (Q01578 from SWISSPROT) and luciferin-regenerating enzyme (LRE, Q86DU5 from SWISSPROT). SMP-30 is known to hydrolyse diisopropyl phosphorofluoridate in the liver, and has been noted as having sequence similarity, in the region described in this family, with PON1 (P52430 from SWISSPROT) and LRE. ; PDB: 2GHS_A 2DG0_L 2DG1_D 2DSO_D 3E5Z_A 2IAT_A 2IAV_A 2GVV_A 3HLI_A 2GVU_A ....
Probab=98.82 E-value=9.2e-06 Score=72.12 Aligned_cols=223 Identities=12% Similarity=0.063 Sum_probs=135.9
Q ss_pred eEEEEEecC-CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEe-cCCCEEEEEeCCCcE
Q 010390 55 AVSFCKTSK-NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWI-KEDTNILTASGDQTI 132 (512)
Q Consensus 55 ~v~~~~~s~-~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s-~~~~~l~s~~~dg~i 132 (512)
++.| .+ ++.++++--..+.|..|+..++.. ..+.. .....+++. +++ .|+.+..++ +
T Consensus 4 gp~~---d~~~g~l~~~D~~~~~i~~~~~~~~~~--------------~~~~~--~~~~G~~~~~~~g-~l~v~~~~~-~ 62 (246)
T PF08450_consen 4 GPVW---DPRDGRLYWVDIPGGRIYRVDPDTGEV--------------EVIDL--PGPNGMAFDRPDG-RLYVADSGG-I 62 (246)
T ss_dssp EEEE---ETTTTEEEEEETTTTEEEEEETTTTEE--------------EEEES--SSEEEEEEECTTS-EEEEEETTC-E
T ss_pred ceEE---ECCCCEEEEEEcCCCEEEEEECCCCeE--------------EEEec--CCCceEEEEccCC-EEEEEEcCc-e
Confidence 4556 66 778888888899999999876532 11111 127788888 564 555555555 5
Q ss_pred EEEeCCCCeeeecccC-----cCCCEEEEEeeCCCCCeEEEEeCC--------CcEEEEeCCCCCCCCCccccceeeecc
Q 010390 133 KIWDAEKKKCTGALMG-----HTGSIKSLCSHPTNSDILVSGSRD--------GSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~-----h~~~v~~l~~~~~~~~~l~s~~~d--------g~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
.++|+.+++....... .....+.+++.++| ++.++.... |.|..++.. ++.
T Consensus 63 ~~~d~~~g~~~~~~~~~~~~~~~~~~ND~~vd~~G-~ly~t~~~~~~~~~~~~g~v~~~~~~-~~~-------------- 126 (246)
T PF08450_consen 63 AVVDPDTGKVTVLADLPDGGVPFNRPNDVAVDPDG-NLYVTDSGGGGASGIDPGSVYRIDPD-GKV-------------- 126 (246)
T ss_dssp EEEETTTTEEEEEEEEETTCSCTEEEEEEEE-TTS--EEEEEECCBCTTCGGSEEEEEEETT-SEE--------------
T ss_pred EEEecCCCcEEEEeeccCCCcccCCCceEEEcCCC-CEEEEecCCCccccccccceEEECCC-CeE--------------
Confidence 6669988865433322 33568899999988 666666543 345555554 211
Q ss_pred cccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeE
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISS 279 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~ 279 (512)
......-...+.++|+|+++.++++-+..+.|..+++.............. ...........
T Consensus 127 --------------~~~~~~~~~pNGi~~s~dg~~lyv~ds~~~~i~~~~~~~~~~~~~~~~~~~----~~~~~~g~pDG 188 (246)
T PF08450_consen 127 --------------TVVADGLGFPNGIAFSPDGKTLYVADSFNGRIWRFDLDADGGELSNRRVFI----DFPGGPGYPDG 188 (246)
T ss_dssp --------------EEEEEEESSEEEEEEETTSSEEEEEETTTTEEEEEEEETTTCCEEEEEEEE----E-SSSSCEEEE
T ss_pred --------------EEEecCcccccceEECCcchheeecccccceeEEEeccccccceeeeeeEE----EcCCCCcCCCc
Confidence 011122345789999999999988787889999999874433111000000 11111134778
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEE-CCCCCEEEE
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEI-CPNASHILS 337 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~-s~~~~~l~~ 337 (512)
++++.+|++.++....+.|.++|.. ...+..+... ...+++++| .++.+.|+.
T Consensus 189 ~~vD~~G~l~va~~~~~~I~~~~p~---G~~~~~i~~p--~~~~t~~~fgg~~~~~L~v 242 (246)
T PF08450_consen 189 LAVDSDGNLWVADWGGGRIVVFDPD---GKLLREIELP--VPRPTNCAFGGPDGKTLYV 242 (246)
T ss_dssp EEEBTTS-EEEEEETTTEEEEEETT---SCEEEEEE-S--SSSEEEEEEESTTSSEEEE
T ss_pred ceEcCCCCEEEEEcCCCEEEEECCC---ccEEEEEcCC--CCCEEEEEEECCCCCEEEE
Confidence 9999999988888789999999974 2233333322 124677888 466555543
No 303
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.78 E-value=2.2e-08 Score=59.81 Aligned_cols=37 Identities=24% Similarity=0.620 Sum_probs=35.1
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWD 136 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd 136 (512)
++..+.+|.+.|++|+|+|++.+|++++.|+.|++||
T Consensus 3 ~~~~~~~h~~~i~~i~~~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 3 CVRTFRGHSSSINSIAWSPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEESSSSSEEEEEEETTSSEEEEEETTSEEEEEE
T ss_pred EEEEEcCCCCcEEEEEEecccccceeeCCCCEEEEEC
Confidence 4778899999999999999999999999999999997
No 304
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.73 E-value=5e-06 Score=73.71 Aligned_cols=85 Identities=21% Similarity=0.253 Sum_probs=74.8
Q ss_pred eeccccCCCcEEEEEEecCCC-EEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 101 ISDWVAHQNAIFDLCWIKEDT-NILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~-~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
..-+.+|...|.+++|+|..+ +|..++.+..|+|.|+++..++..+..+ ..+++++|.-++.+++++|-.+|.|.+||
T Consensus 186 sq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy~a~-~~~wSC~wDlde~h~IYaGl~nG~VlvyD 264 (463)
T KOG1645|consen 186 SQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSYIAY-NQIWSCCWDLDERHVIYAGLQNGMVLVYD 264 (463)
T ss_pred hhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeeheecc-CCceeeeeccCCcceeEEeccCceEEEEE
Confidence 445567888999999999776 6778999999999999999999888877 78999999999889999999999999999
Q ss_pred CCCCCCC
Q 010390 180 LRCKSSP 186 (512)
Q Consensus 180 ~~~~~~~ 186 (512)
++..+..
T Consensus 265 ~R~~~~~ 271 (463)
T KOG1645|consen 265 MRQPEGP 271 (463)
T ss_pred ccCCCch
Confidence 9976643
No 305
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.72 E-value=2.2e-05 Score=79.56 Aligned_cols=268 Identities=12% Similarity=0.092 Sum_probs=155.2
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC----CCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL----RCK 183 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~----~~~ 183 (512)
...|.++.|..+...|+.+..+|.|.+-|.++.... ....-...|.+++|+|+. ..++..+.++++.+-+- -..
T Consensus 68 d~~i~s~~fl~d~~~i~v~~~~G~iilvd~et~~~e-ivg~vd~GI~aaswS~De-e~l~liT~~~tll~mT~~f~~i~E 145 (1265)
T KOG1920|consen 68 DDEIVSVQFLADTNSICVITALGDIILVDPETLELE-IVGNVDNGISAASWSPDE-ELLALITGRQTLLFMTKDFEPIAE 145 (1265)
T ss_pred CcceEEEEEecccceEEEEecCCcEEEEccccccee-eeeeccCceEEEeecCCC-cEEEEEeCCcEEEEEeccccchhc
Confidence 368999999999999999999999999998776432 222244689999999998 78888887777766432 111
Q ss_pred CCCCCc-cccceeeeccccc--------ccccccccccce-----ecccccccEEEEEEeecCCEEEEEe---ecC-CeE
Q 010390 184 SSPKSN-CAESFVFSSAVVK--------GAHLLSQSKRVS-----RRKAASMSITSVLYLKDEVSIATAS---AVN-SIV 245 (512)
Q Consensus 184 ~~~~~~-~~~~~~~~~~~~~--------~~~~~~~~~~~~-----~~~~~~~~v~~~~~~~~~~~l~~~g---~~d-g~i 245 (512)
+....- ..........+.+ .+...+ ..... ........=++|.|--||.++++++ ..+ ..|
T Consensus 146 ~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~-~~~~~~ek~~~~~~~~~~~~~IsWRgDg~~fAVs~~~~~~~~Rki 224 (1265)
T KOG1920|consen 146 KPLDADDERKSKFVNVGWGRKETQFRGSEGRQAA-RQKIEKEKALEQIEQDDHKTSISWRGDGEYFAVSFVESETGTRKI 224 (1265)
T ss_pred cccccccccccccceecccccceeeecchhhhcc-cccccccccccchhhccCCceEEEccCCcEEEEEEEeccCCceeE
Confidence 111000 0000000000000 000000 00000 0001223345699999999988743 124 789
Q ss_pred EEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceEeeeeceecee
Q 010390 246 KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQHFSGCRIESF 322 (512)
Q Consensus 246 ~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 322 (512)
++||.+ +..... .....+--.+++|-|.|..+++-. .|+.|.+|.-+....... .+........
T Consensus 225 rV~drE-g~Lns~-----------se~~~~l~~~LsWkPsgs~iA~iq~~~sd~~IvffErNGL~hg~f-~l~~p~de~~ 291 (1265)
T KOG1920|consen 225 RVYDRE-GALNST-----------SEPVEGLQHSLSWKPSGSLIAAIQCKTSDSDIVFFERNGLRHGEF-VLPFPLDEKE 291 (1265)
T ss_pred EEeccc-chhhcc-----------cCcccccccceeecCCCCeEeeeeecCCCCcEEEEecCCcccccc-ccCCcccccc
Confidence 999987 332211 111223356799999999888754 556899998654333211 1111111222
Q ss_pred EEEEEECCCCCEEEE---ecCCCCEEEEecCCCCCCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeC
Q 010390 323 YVKSEICPNASHILS---GSSDGNAYVWQVNKPQADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 323 ~~~~~~s~~~~~l~~---g~~dg~i~iw~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~ 393 (512)
+..++|+.++..|++ ......|++|-+.+..-.+. .+.-..... +.|+|..+..|..-..+|...++++
T Consensus 292 ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~NyhWYLKq~l~~~~~~~--~~W~p~~~~~L~v~~~sG~~~v~~~ 364 (1265)
T KOG1920|consen 292 VEELAWNSNSDILAVVTSNLENSLVQLWTTGNYHWYLKQELQFSQKAL--LMWDPVTEKTLHVLRESGQRLVRDF 364 (1265)
T ss_pred hheeeecCCCCceeeeecccccceEEEEEecCeEEEEEEEEecccccc--ccccCCCceeEEEEecCCcEEEEEE
Confidence 677999999999987 44445599998876543211 111111122 7788766555655556666655554
No 306
>PF00400 WD40: WD domain, G-beta repeat; InterPro: IPR019781 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events.; PDB: 2ZKQ_a 3CFV_B 3CFS_B 1PEV_A 1NR0_A 1VYH_T 3RFH_A 3O2Z_T 3FRX_C 3U5G_g ....
Probab=98.72 E-value=3.4e-08 Score=58.94 Aligned_cols=39 Identities=18% Similarity=0.431 Sum_probs=36.3
Q ss_pred eeeEeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEE
Q 010390 40 GAVTVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFD 81 (512)
Q Consensus 40 ~~~~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd 81 (512)
+.++..+.+|.++|.+|+| +|++++||+|+.|+.|++||
T Consensus 1 g~~~~~~~~h~~~i~~i~~---~~~~~~~~s~~~D~~i~vwd 39 (39)
T PF00400_consen 1 GKCVRTFRGHSSSINSIAW---SPDGNFLASGSSDGTIRVWD 39 (39)
T ss_dssp EEEEEEEESSSSSEEEEEE---ETTSSEEEEEETTSEEEEEE
T ss_pred CeEEEEEcCCCCcEEEEEE---ecccccceeeCCCCEEEEEC
Confidence 4567889999999999999 99999999999999999997
No 307
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.68 E-value=1.1e-05 Score=77.10 Aligned_cols=288 Identities=9% Similarity=-0.000 Sum_probs=153.2
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC-CCcEE-EEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH-QNAIF-DLCWIKEDTNILTASGDQTIKIWDAEKKK 141 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~-~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 141 (512)
.+..+++++.+|.|.-+|.++++..-...... ....+... ...+. .+.. ++..++.++.+|.+..+|.++|+
T Consensus 68 ~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~----~~~~~~~~~~~~~~~~~~v--~~~~v~v~~~~g~l~ald~~tG~ 141 (394)
T PRK11138 68 AYNKVYAADRAGLVKALDADTGKEIWSVDLSE----KDGWFSKNKSALLSGGVTV--AGGKVYIGSEKGQVYALNAEDGE 141 (394)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEeeEEcCCC----cccccccccccccccccEE--ECCEEEEEcCCCEEEEEECCCCC
Confidence 35567777788889999988775421100000 00000000 00110 1111 35667778889999999999999
Q ss_pred eeecccCcCCCEEE-EEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccc
Q 010390 142 CTGALMGHTGSIKS-LCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS 220 (512)
Q Consensus 142 ~~~~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (512)
.+....... .+.+ .... + ..++.+..++.|..+|..+++..-........ .......
T Consensus 142 ~~W~~~~~~-~~~ssP~v~--~-~~v~v~~~~g~l~ald~~tG~~~W~~~~~~~~------------------~~~~~~~ 199 (394)
T PRK11138 142 VAWQTKVAG-EALSRPVVS--D-GLVLVHTSNGMLQALNESDGAVKWTVNLDVPS------------------LTLRGES 199 (394)
T ss_pred CcccccCCC-ceecCCEEE--C-CEEEEECCCCEEEEEEccCCCEeeeecCCCCc------------------ccccCCC
Confidence 887775433 2222 1222 3 46667778899999999988765433211000 0000001
Q ss_pred ccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCC--CCCEEEEEecCCeE
Q 010390 221 MSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDS--NGVFLTASCMDHRI 298 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~i 298 (512)
.++. . ++ .+++ +..+|.+..+|..+++................ .....+..+| .+..++.++.+|.+
T Consensus 200 sP~v----~-~~-~v~~-~~~~g~v~a~d~~~G~~~W~~~~~~~~~~~~~----~~~~~~~~sP~v~~~~vy~~~~~g~l 268 (394)
T PRK11138 200 APAT----A-FG-GAIV-GGDNGRVSAVLMEQGQLIWQQRISQPTGATEI----DRLVDVDTTPVVVGGVVYALAYNGNL 268 (394)
T ss_pred CCEE----E-CC-EEEE-EcCCCEEEEEEccCChhhheeccccCCCccch----hcccccCCCcEEECCEEEEEEcCCeE
Confidence 1111 1 22 3443 44688999999988877654322111000000 0000111112 24467777789999
Q ss_pred EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCe
Q 010390 299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGK 378 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~ 378 (512)
..+|..+++..-...+. . ...+. ..+..|+.++.+|.+..+|..+++........-.....+.... + .+
T Consensus 269 ~ald~~tG~~~W~~~~~-----~-~~~~~--~~~~~vy~~~~~g~l~ald~~tG~~~W~~~~~~~~~~~sp~v~--~-g~ 337 (394)
T PRK11138 269 VALDLRSGQIVWKREYG-----S-VNDFA--VDGGRIYLVDQNDRVYALDTRGGVELWSQSDLLHRLLTAPVLY--N-GY 337 (394)
T ss_pred EEEECCCCCEEEeecCC-----C-ccCcE--EECCEEEEEcCCCeEEEEECCCCcEEEcccccCCCcccCCEEE--C-CE
Confidence 99998765321111111 0 00111 2456777788899999999988764221111001112222221 3 57
Q ss_pred EEEEeCCCcEEEEeCCCCccccc
Q 010390 379 IVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 379 l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
|+.++.||.|.+.|..+|+.+..
T Consensus 338 l~v~~~~G~l~~ld~~tG~~~~~ 360 (394)
T PRK11138 338 LVVGDSEGYLHWINREDGRFVAQ 360 (394)
T ss_pred EEEEeCCCEEEEEECCCCCEEEE
Confidence 88899999999999999987654
No 308
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.68 E-value=8.6e-06 Score=71.54 Aligned_cols=189 Identities=17% Similarity=0.231 Sum_probs=122.9
Q ss_pred ecCCCcEEEEe-----eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC-------
Q 010390 61 TSKNSHIFAVS-----DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------- 128 (512)
Q Consensus 61 ~s~~~~~latg-----~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------- 128 (512)
||+||++|.+. ...|.|-|||.... ...+.++..|.-.-..+.+.||++.|+.+..
T Consensus 58 fs~dG~~LytTEnd~~~g~G~IgVyd~~~~------------~~ri~E~~s~GIGPHel~l~pDG~tLvVANGGI~Thpd 125 (305)
T PF07433_consen 58 FSPDGRLLYTTENDYETGRGVIGVYDAARG------------YRRIGEFPSHGIGPHELLLMPDGETLVVANGGIETHPD 125 (305)
T ss_pred EcCCCCEEEEeccccCCCcEEEEEEECcCC------------cEEEeEecCCCcChhhEEEcCCCCEEEEEcCCCccCcc
Confidence 49999999986 45688999999733 2447777888777888999999988887632
Q ss_pred -----------CCcEEEEeCCCCeeeec--c--cCcCCCEEEEEeeCCCCCeEEEEeCCCc-------EEEEeCCCCCCC
Q 010390 129 -----------DQTIKIWDAEKKKCTGA--L--MGHTGSIKSLCSHPTNSDILVSGSRDGS-------FAIWDLRCKSSP 186 (512)
Q Consensus 129 -----------dg~i~iwd~~~~~~~~~--~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~-------i~vwd~~~~~~~ 186 (512)
+-.+..-|..+|+.+.. + ..|.-.|..+++.+++ ..++..-..|. |-+++... ..
T Consensus 126 ~GR~kLNl~tM~psL~~ld~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G-~V~~a~Q~qg~~~~~~PLva~~~~g~--~~ 202 (305)
T PF07433_consen 126 SGRAKLNLDTMQPSLVYLDARSGALLEQVELPPDLHQLSIRHLAVDGDG-TVAFAMQYQGDPGDAPPLVALHRRGG--AL 202 (305)
T ss_pred cCceecChhhcCCceEEEecCCCceeeeeecCccccccceeeEEecCCC-cEEEEEecCCCCCccCCeEEEEcCCC--cc
Confidence 23455566777776655 4 3366788888888876 44444433321 22222111 11
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
. ...............+-+|++++++..+++++-..+.+.+||..++.......
T Consensus 203 ~--------------------~~~~p~~~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~------ 256 (305)
T PF07433_consen 203 R--------------------LLPAPEEQWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVP------ 256 (305)
T ss_pred e--------------------eccCChHHHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeeccc------
Confidence 0 00111112234456899999999999999888889999999999988764332
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
...+..++..+++ ++++.+ .|.+.
T Consensus 257 -------l~D~cGva~~~~~-f~~ssG-~G~~~ 280 (305)
T PF07433_consen 257 -------LPDACGVAPTDDG-FLVSSG-QGQLI 280 (305)
T ss_pred -------cCceeeeeecCCc-eEEeCC-CccEE
Confidence 2336667777776 444443 44433
No 309
>KOG2695 consensus WD40 repeat protein [General function prediction only]
Probab=98.66 E-value=8.1e-08 Score=82.94 Aligned_cols=156 Identities=19% Similarity=0.240 Sum_probs=108.6
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC----
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK---- 140 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~---- 140 (512)
|-.+++| .+-.|-|-|++++. .+....++.|.++.|...+..+..|..+|.|...|++.+
T Consensus 225 gyhfs~G-~sqqv~L~nvetg~---------------~qsf~sksDVfAlQf~~s~nLv~~GcRngeI~~iDLR~rnqG~ 288 (425)
T KOG2695|consen 225 GYHFSVG-LSQQVLLTNVETGH---------------QQSFQSKSDVFALQFAGSDNLVFNGCRNGEIFVIDLRCRNQGN 288 (425)
T ss_pred eeeeccc-ccceeEEEEeeccc---------------ccccccchhHHHHHhcccCCeeEecccCCcEEEEEeeecccCC
Confidence 3344444 46678888888763 223346789999999988999999999999999999765
Q ss_pred -eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc
Q 010390 141 -KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA 219 (512)
Q Consensus 141 -~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 219 (512)
.+...+. |...|+++.......++|++.+.+|+|++||.+..+.... +....+|
T Consensus 289 ~~~a~rly-h~Ssvtslq~Lq~s~q~LmaS~M~gkikLyD~R~~K~~~~------------------------V~qYeGH 343 (425)
T KOG2695|consen 289 GWCAQRLY-HDSSVTSLQILQFSQQKLMASDMTGKIKLYDLRATKCKKS------------------------VMQYEGH 343 (425)
T ss_pred CcceEEEE-cCcchhhhhhhccccceEeeccCcCceeEeeehhhhcccc------------------------eeeeecc
Confidence 3344443 8899999987764448899999999999999986554321 1122333
Q ss_pred cccEEEE--EEeecCCEEEEEeecCCeEEEEeccCccceecccCC
Q 010390 220 SMSITSV--LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWP 262 (512)
Q Consensus 220 ~~~v~~~--~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~ 262 (512)
-..-.-+ ..++....+++ +++|...+||.++.+....+...+
T Consensus 344 vN~~a~l~~~v~~eeg~I~s-~GdDcytRiWsl~~ghLl~tipf~ 387 (425)
T KOG2695|consen 344 VNLSAYLPAHVKEEEGSIFS-VGDDCYTRIWSLDSGHLLCTIPFP 387 (425)
T ss_pred cccccccccccccccceEEE-ccCeeEEEEEecccCceeeccCCC
Confidence 3222222 22345555665 558999999999998877665443
No 310
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.65 E-value=3.4e-06 Score=81.34 Aligned_cols=191 Identities=17% Similarity=0.142 Sum_probs=131.0
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
+.+.|+++ .+++||-|..+|.|++++.+.. ..+...|... ..+|.+++||+.||
T Consensus 40 D~is~~av-----~~~~~~~GtH~g~v~~~~~~~~---------------~~~~~~~s~~------~~~Gey~asCS~DG 93 (846)
T KOG2066|consen 40 DAISCCAV-----HDKFFALGTHRGAVYLTTCQGN---------------PKTNFDHSSS------ILEGEYVASCSDDG 93 (846)
T ss_pred hHHHHHHh-----hcceeeeccccceEEEEecCCc---------------cccccccccc------ccCCceEEEecCCC
Confidence 44555555 4689999999999999998653 1222344433 45899999999999
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCC----CCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPT----NSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
+|.|-.+-+.+...++. ...++.+++++|+ ....+++|+.-| +.++.-+=.....
T Consensus 94 kv~I~sl~~~~~~~~~d-f~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~wlgnk~------------------- 152 (846)
T KOG2066|consen 94 KVVIGSLFTDDEITQYD-FKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERNWLGNKD------------------- 152 (846)
T ss_pred cEEEeeccCCccceeEe-cCCcceeEEeccchhhhhhhheeecCcce-EEEehhhhhcCcc-------------------
Confidence 99999999888877776 4468999999997 236899999888 7776533111110
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (512)
........++|.++.|. |..++-+ .|-.|++||+.+.+.+.....+... .....-...+.|.++.
T Consensus 153 ------~v~l~~~eG~I~~i~W~--g~lIAWa--nd~Gv~vyd~~~~~~l~~i~~p~~~-----~R~e~fpphl~W~~~~ 217 (846)
T KOG2066|consen 153 ------SVVLSEGEGPIHSIKWR--GNLIAWA--NDDGVKVYDTPTRQRLTNIPPPSQS-----VRPELFPPHLHWQDED 217 (846)
T ss_pred ------ceeeecCccceEEEEec--CcEEEEe--cCCCcEEEeccccceeeccCCCCCC-----CCcccCCCceEecCCC
Confidence 01234557899999996 5667765 3666999999998877666555521 1112224457777655
Q ss_pred CEEEEEecCCeEEEEEccc
Q 010390 287 VFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 287 ~~l~~~~~dg~i~i~d~~~ 305 (512)
+ |+.| ...+|++..++.
T Consensus 218 ~-LVIG-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 218 R-LVIG-WGDSVKICSIKK 234 (846)
T ss_pred e-EEEe-cCCeEEEEEEec
Confidence 4 4444 555788888763
No 311
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=98.62 E-value=1.5e-05 Score=74.66 Aligned_cols=268 Identities=15% Similarity=0.152 Sum_probs=135.4
Q ss_pred cCCCcEEEEe---------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcE
Q 010390 62 SKNSHIFAVS---------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTI 132 (512)
Q Consensus 62 s~~~~~latg---------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i 132 (512)
|||+++++.. +..+.+.|||++++. ...+......+....|+|+|+.|+... ++.|
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~--------------~~~l~~~~~~~~~~~~sP~g~~~~~v~-~~nl 65 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGE--------------ITPLTPPPPKLQDAKWSPDGKYIAFVR-DNNL 65 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTE--------------EEESS-EETTBSEEEE-SSSTEEEEEE-TTEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCc--------------eEECcCCccccccceeecCCCeeEEEe-cCce
Confidence 6888877773 235679999998753 222222257788999999999999875 6789
Q ss_pred EEEeCCCCeeeeccc-C-------c---------CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcccccee
Q 010390 133 KIWDAEKKKCTGALM-G-------H---------TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFV 195 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~-~-------h---------~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~ 195 (512)
.+++..+++..+.-. + - -+.-.++-|+|++..+++.--.+..|..+.+........
T Consensus 66 y~~~~~~~~~~~lT~dg~~~i~nG~~dwvyeEEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~------- 138 (353)
T PF00930_consen 66 YLRDLATGQETQLTTDGEPGIYNGVPDWVYEEEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS------- 138 (353)
T ss_dssp EEESSTTSEEEESES--TTTEEESB--HHHHHHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE-------
T ss_pred EEEECCCCCeEEeccccceeEEcCccceeccccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc-------
Confidence 999987775443221 1 0 112346789999944444444455666655431111000
Q ss_pred eecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 196 FSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 196 ~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
....+..+.+-.-|.... .-.+.++|+.+++...... +. .......
T Consensus 139 -----------------------~yp~~~~~~YPk~G~~np-----~v~l~v~~~~~~~~~~~~~-~~-----~~~~~~~ 184 (353)
T PF00930_consen 139 -----------------------QYPEVESIRYPKAGDPNP-----RVSLFVVDLASGKTTELDP-PN-----SLNPQDY 184 (353)
T ss_dssp -----------------------SS-EEEEEE--BTTS--------EEEEEEEESSSTCCCEE----H-----HHHTSSE
T ss_pred -----------------------cCCcccccccCCCCCcCC-----ceEEEEEECCCCcEEEeee-cc-----ccCCCcc
Confidence 011344555533333221 1236778887776532110 00 1123345
Q ss_pred CeeEEEeCCCCCEEEEEe--cCC---eEEEEEcccCCCCceEeeeeceeceeEEEEEEC-CC-CCEEEEecCCCCEEEEe
Q 010390 276 GISSLSQDSNGVFLTASC--MDH---RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEIC-PN-ASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~--~dg---~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s-~~-~~~l~~g~~dg~i~iw~ 348 (512)
-+..+.|.+++..|+..- .+. .+.++|..+.....+.......--.......+. ++ +.+|.....+|.-+||-
T Consensus 185 yl~~v~W~~d~~~l~~~~~nR~q~~~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~ 264 (353)
T PF00930_consen 185 YLTRVGWSPDGKRLWVQWLNRDQNRLDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYL 264 (353)
T ss_dssp EEEEEEEEETTEEEEEEEEETTSTEEEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEE
T ss_pred CcccceecCCCcEEEEEEcccCCCEEEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEE
Confidence 588999999998444333 332 455666655333322221111100111123443 44 45555555777766655
Q ss_pred cCCCCCCCceeccccCCeEE-EEeCCCCCCeEEEEeCC
Q 010390 349 VNKPQADPIKLKSHDGEVTA-VNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~-v~~~~~~~~~l~s~~~d 385 (512)
+.........+....-.|+. +.|++++..++.++..+
T Consensus 265 ~~~~~~~~~~lT~G~~~V~~i~~~d~~~~~iyf~a~~~ 302 (353)
T PF00930_consen 265 YDLDGGKPRQLTSGDWEVTSILGWDEDNNRIYFTANGD 302 (353)
T ss_dssp EETTSSEEEESS-SSS-EEEEEEEECTSSEEEEEESSG
T ss_pred EcccccceeccccCceeecccceEcCCCCEEEEEecCC
Confidence 54433222344444556755 66788874555566653
No 312
>PF07433 DUF1513: Protein of unknown function (DUF1513); InterPro: IPR008311 There are currently no experimental data for members of this group or their homologues, nor do they exhibit features indicative of any function.
Probab=98.61 E-value=7e-05 Score=65.94 Aligned_cols=244 Identities=13% Similarity=0.094 Sum_probs=135.9
Q ss_pred eEEEEEecC-CCcEEEEeeCCCc-EEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----
Q 010390 55 AVSFCKTSK-NSHIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---- 128 (512)
Q Consensus 55 ~v~~~~~s~-~~~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---- 128 (512)
+++. +| .+..+|.+-.-|. ..+||..++...... ....-+.|.+| -.|++||++|++.-.
T Consensus 9 ~~a~---~p~~~~avafaRRPG~~~~v~D~~~g~~~~~~-----~a~~gRHFyGH------g~fs~dG~~LytTEnd~~~ 74 (305)
T PF07433_consen 9 GVAA---HPTRPEAVAFARRPGTFALVFDCRTGQLLQRL-----WAPPGRHFYGH------GVFSPDGRLLYTTENDYET 74 (305)
T ss_pred ceee---CCCCCeEEEEEeCCCcEEEEEEcCCCceeeEE-----cCCCCCEEecC------EEEcCCCCEEEEeccccCC
Confidence 5555 77 5567777766665 678898877542211 11223445566 579999999997644
Q ss_pred -CCcEEEEeCC-CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeC-------CCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 129 -DQTIKIWDAE-KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSR-------DGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 129 -dg~i~iwd~~-~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~-------dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
.|.|-|||.. +-+.+.++..|.-.-..+.+.|++ ..|+.+-. .|.-++ ++.+.+..... .
T Consensus 75 g~G~IgVyd~~~~~~ri~E~~s~GIGPHel~l~pDG-~tLvVANGGI~Thpd~GR~kL-Nl~tM~psL~~--------l- 143 (305)
T PF07433_consen 75 GRGVIGVYDAARGYRRIGEFPSHGIGPHELLLMPDG-ETLVVANGGIETHPDSGRAKL-NLDTMQPSLVY--------L- 143 (305)
T ss_pred CcEEEEEEECcCCcEEEeEecCCCcChhhEEEcCCC-CEEEEEcCCCccCcccCceec-ChhhcCCceEE--------E-
Confidence 5889999998 667788888887777888999998 44544421 111111 11111110000 0
Q ss_pred cccccccccccccce--ec--ccccccEEEEEEeecCCEEEEEeecCC-------eEEEEeccCccceecccCCCccccc
Q 010390 200 VVKGAHLLSQSKRVS--RR--KAASMSITSVLYLKDEVSIATASAVNS-------IVKFWDTRNLKAQITQAWPHAESSS 268 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~--~~--~~~~~~v~~~~~~~~~~~l~~~g~~dg-------~i~iwd~~~~~~~~~~~~~~~~~~~ 268 (512)
....+..+. .+ ..|...+.-+++.++|..++..= ..| .|-+++.... ......+..
T Consensus 144 ------d~~sG~ll~q~~Lp~~~~~lSiRHLa~~~~G~V~~a~Q-~qg~~~~~~PLva~~~~g~~--~~~~~~p~~---- 210 (305)
T PF07433_consen 144 ------DARSGALLEQVELPPDLHQLSIRHLAVDGDGTVAFAMQ-YQGDPGDAPPLVALHRRGGA--LRLLPAPEE---- 210 (305)
T ss_pred ------ecCCCceeeeeecCccccccceeeEEecCCCcEEEEEe-cCCCCCccCCeEEEEcCCCc--ceeccCChH----
Confidence 000111111 12 34666889999998887666432 222 2333333221 111111110
Q ss_pred cccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCE
Q 010390 269 AKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNA 344 (512)
Q Consensus 269 ~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i 344 (512)
......+.+-+|+++.++..+++++ ..|.+.+||..+........+ ..+..++-.+++ ++++.+ .|.+
T Consensus 211 ~~~~l~~Y~gSIa~~~~g~~ia~tsPrGg~~~~~d~~tg~~~~~~~l------~D~cGva~~~~~-f~~ssG-~G~~ 279 (305)
T PF07433_consen 211 QWRRLNGYIGSIAADRDGRLIAVTSPRGGRVAVWDAATGRLLGSVPL------PDACGVAPTDDG-FLVSSG-QGQL 279 (305)
T ss_pred HHHhhCCceEEEEEeCCCCEEEEECCCCCEEEEEECCCCCEeecccc------CceeeeeecCCc-eEEeCC-CccE
Confidence 2334456689999999998776665 778999999866432222111 123345555555 555554 3443
No 313
>KOG1645 consensus RING-finger-containing E3 ubiquitin ligase [Posttranslational modification, protein turnover, chaperones]
Probab=98.59 E-value=4.1e-06 Score=74.23 Aligned_cols=98 Identities=23% Similarity=0.234 Sum_probs=80.3
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSK 211 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 211 (512)
+++.+..+.+....+.+|...|..++|+|.+..++..++.+..|+|.|+++.......
T Consensus 175 v~~l~~~~fkssq~lp~~g~~IrdlafSp~~~GLl~~asl~nkiki~dlet~~~vssy---------------------- 232 (463)
T KOG1645|consen 175 VQKLESHDFKSSQILPGEGSFIRDLAFSPFNEGLLGLASLGNKIKIMDLETSCVVSSY---------------------- 232 (463)
T ss_pred eEEeccCCcchhhcccccchhhhhhccCccccceeeeeccCceEEEEecccceeeehe----------------------
Confidence 6667666666666777888999999999998558999999999999999976554432
Q ss_pred cceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 212 RVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 212 ~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
.. ...+++++|.-+....+.+|..+|.|.+||++..+...
T Consensus 233 -----~a-~~~~wSC~wDlde~h~IYaGl~nG~VlvyD~R~~~~~~ 272 (463)
T KOG1645|consen 233 -----IA-YNQIWSCCWDLDERHVIYAGLQNGMVLVYDMRQPEGPL 272 (463)
T ss_pred -----ec-cCCceeeeeccCCcceeEEeccCceEEEEEccCCCchH
Confidence 12 26899999999999999999999999999999876544
No 314
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.55 E-value=3.4e-05 Score=75.28 Aligned_cols=224 Identities=13% Similarity=0.196 Sum_probs=133.5
Q ss_pred EEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC-EEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCCCCCCC
Q 010390 115 CWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS-IKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCKSSPKS 188 (512)
Q Consensus 115 ~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~-v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~ 188 (512)
+|++.+..++.|+.+|.|.+.+ +.-+.++.++.+... |..+ +.-++.++|++.+.|+ .|++|+++..+....
T Consensus 30 c~~s~~~~vvigt~~G~V~~Ln-~s~~~~~~fqa~~~siv~~L-~~~~~~~~L~sv~Ed~~~np~llkiw~lek~~~n~s 107 (933)
T KOG2114|consen 30 CCSSSTGSVVIGTADGRVVILN-SSFQLIRGFQAYEQSIVQFL-YILNKQNFLFSVGEDEQGNPVLLKIWDLEKVDKNNS 107 (933)
T ss_pred EEcCCCceEEEeeccccEEEec-ccceeeehheecchhhhhHh-hcccCceEEEEEeecCCCCceEEEEecccccCCCCC
Confidence 4567888999999999887776 344555778877776 4444 4444446888888775 489999975532211
Q ss_pred ccccceeeecccccccccccccccce--ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVS--RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
+.+... .++. .......++.+++.+.+-+.++ +|..+|.|..+.-+-.+.....
T Consensus 108 ---P~c~~~-------------~ri~~~~np~~~~p~s~l~Vs~~l~~Iv-~Gf~nG~V~~~~GDi~RDrgsr------- 163 (933)
T KOG2114|consen 108 ---PQCLYE-------------HRIFTIKNPTNPSPASSLAVSEDLKTIV-CGFTNGLVICYKGDILRDRGSR------- 163 (933)
T ss_pred ---cceeee-------------eeeeccCCCCCCCcceEEEEEccccEEE-EEecCcEEEEEcCcchhccccc-------
Confidence 001000 0000 1112355788888888855555 5889999999853321111100
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEE
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYV 346 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~i 346 (512)
.........+|+.+++..++..++-...-..|.+|.+... ......+..+. ....|..+++....+++++.+ .+.+
T Consensus 164 ~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr-~p~~~~ld~~G--~~lnCss~~~~t~qfIca~~e-~l~f 239 (933)
T KOG2114|consen 164 QDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGR-TPSLKVLDNNG--ISLNCSSFSDGTYQFICAGSE-FLYF 239 (933)
T ss_pred eeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCC-CcceeeeccCC--ccceeeecCCCCccEEEecCc-eEEE
Confidence 0022334568999999998887444445668999998742 22233233332 345667777765545555544 4999
Q ss_pred EecCCCCCCCceec-cccCCeEEE
Q 010390 347 WQVNKPQADPIKLK-SHDGEVTAV 369 (512)
Q Consensus 347 w~~~~~~~~~~~~~-~h~~~v~~v 369 (512)
|+....+.. ..+. +|...+..+
T Consensus 240 Y~sd~~~~c-faf~~g~kk~~~~~ 262 (933)
T KOG2114|consen 240 YDSDGRGPC-FAFEVGEKKEMLVF 262 (933)
T ss_pred EcCCCccee-eeecCCCeEEEEEE
Confidence 998865553 3444 666544433
No 315
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.55 E-value=3e-06 Score=82.09 Aligned_cols=108 Identities=17% Similarity=0.270 Sum_probs=84.3
Q ss_pred EEecCCCcEEEEee----CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEE
Q 010390 59 CKTSKNSHIFAVSD----EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKI 134 (512)
Q Consensus 59 ~~~s~~~~~latg~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~i 134 (512)
+.|+|...++|+++ ..|.|.||- +++++.. -.+.. -.+++++|+|..-.|+.|-.-|.+.+
T Consensus 21 ~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr-----------~Vt~P---~hatSLCWHpe~~vLa~gwe~g~~~v 85 (1416)
T KOG3617|consen 21 SSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQR-----------DVTYP---VHATSLCWHPEEFVLAQGWEMGVSDV 85 (1416)
T ss_pred cccCCCCceeEEEEecCCCCceEEEEe-cCCCCCc-----------ccccc---eehhhhccChHHHHHhhccccceeEE
Confidence 34488888888874 457898884 3333311 11111 23567999999888999999999999
Q ss_pred EeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 135 WDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 135 wd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
|...+.+.-.....|..+|..+.|+++| ..++++..-|.|.+|....
T Consensus 86 ~~~~~~e~htv~~th~a~i~~l~wS~~G-~~l~t~d~~g~v~lwr~d~ 132 (1416)
T KOG3617|consen 86 QKTNTTETHTVVETHPAPIQGLDWSHDG-TVLMTLDNPGSVHLWRYDV 132 (1416)
T ss_pred EecCCceeeeeccCCCCCceeEEecCCC-CeEEEcCCCceeEEEEeee
Confidence 9988877776677899999999999998 8999999999999998763
No 316
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.52 E-value=9.4e-08 Score=92.54 Aligned_cols=204 Identities=16% Similarity=0.255 Sum_probs=141.0
Q ss_pred eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccc
Q 010390 141 KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAAS 220 (512)
Q Consensus 141 ~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 220 (512)
+...+|..|....+|++|+-.. +.|+.|+..|.|+++++.++.... ...+|.
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~-~hL~vG~~~Geik~~nv~sG~~e~---------------------------s~ncH~ 1143 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGT-NHLAVGSHAGEIKIFNVSSGSMEE---------------------------SVNCHQ 1143 (1516)
T ss_pred ccchhhhccccceeeEEeecCC-ceEEeeeccceEEEEEccCccccc---------------------------cccccc
Confidence 3456677888999999999876 899999999999999999876543 456888
Q ss_pred ccEEEEEEeecCCEEEEEeecCC-eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 221 MSITSVLYLKDEVSIATASAVNS-IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
..++-+.-+.+|..++++++... ...+|++..--.. ......-.++.|+...+.-+.|+......
T Consensus 1144 SavT~vePs~dgs~~Ltsss~S~PlsaLW~~~s~~~~--------------~Hsf~ed~~vkFsn~~q~r~~gt~~d~a~ 1209 (1516)
T KOG1832|consen 1144 SAVTLVEPSVDGSTQLTSSSSSSPLSALWDASSTGGP--------------RHSFDEDKAVKFSNSLQFRALGTEADDAL 1209 (1516)
T ss_pred cccccccccCCcceeeeeccccCchHHHhccccccCc--------------cccccccceeehhhhHHHHHhcccccceE
Confidence 99999999999999888776555 5678988752211 11123456788887766666676667899
Q ss_pred EEEcccCCCCceEe-eeeceece-eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCC
Q 010390 300 LYNVLQLDKGPIQH-FSGCRIES-FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAG 377 (512)
Q Consensus 300 i~d~~~~~~~~~~~-~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~ 377 (512)
+||+.+... +.+ +.+..... .-....|+|+..+++ +|| .+||++..+. +..+......+. -.|+|.| .
T Consensus 1210 ~YDvqT~~~--l~tylt~~~~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~~a-Ih~FD~ft~~~~-G~FHP~g-~ 1279 (1516)
T KOG1832|consen 1210 LYDVQTCSP--LQTYLTDTVTSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIPEA-IHRFDQFTDYGG-GGFHPSG-N 1279 (1516)
T ss_pred EEecccCcH--HHHhcCcchhhhhhccccccCCCcceEe---eCc--eeeeeccHHH-Hhhhhhheeccc-ccccCCC-c
Confidence 999876432 222 11111111 113478999998887 355 5899988754 344444332232 3499999 6
Q ss_pred eEEEEeCCCcEEEEeCCCCccccc
Q 010390 378 KIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 378 ~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.++.-+. |||+.+.++++.
T Consensus 1280 eVIINSE-----IwD~RTF~lLh~ 1298 (1516)
T KOG1832|consen 1280 EVIINSE-----IWDMRTFKLLHS 1298 (1516)
T ss_pred eEEeech-----hhhhHHHHHHhc
Confidence 6666543 899999887765
No 317
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.50 E-value=6.4e-06 Score=72.86 Aligned_cols=224 Identities=13% Similarity=0.026 Sum_probs=125.5
Q ss_pred CCcEEEEeCCCCeeeecccCc--CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGH--TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h--~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
+|+|..||..+|+.+.....- .....+... +.+ ..+++++.++.|..||..+++........
T Consensus 2 ~g~l~~~d~~tG~~~W~~~~~~~~~~~~~~~~-~~~-~~v~~~~~~~~l~~~d~~tG~~~W~~~~~-------------- 65 (238)
T PF13360_consen 2 DGTLSALDPRTGKELWSYDLGPGIGGPVATAV-PDG-GRVYVASGDGNLYALDAKTGKVLWRFDLP-------------- 65 (238)
T ss_dssp TSEEEEEETTTTEEEEEEECSSSCSSEEETEE-EET-TEEEEEETTSEEEEEETTTSEEEEEEECS--------------
T ss_pred CCEEEEEECCCCCEEEEEECCCCCCCccceEE-EeC-CEEEEEcCCCEEEEEECCCCCEEEEeecc--------------
Confidence 688999999999988777531 122221122 234 56777789999999999877643322110
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc-cCCCccccccccccccCeeEEEeCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ-AWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~-~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
..+.... ...+..+++.. .++.|..+|..+++..... ....+ ... ........+ +
T Consensus 66 --------------~~~~~~~-~~~~~~v~v~~-~~~~l~~~d~~tG~~~W~~~~~~~~----~~~--~~~~~~~~~--~ 121 (238)
T PF13360_consen 66 --------------GPISGAP-VVDGGRVYVGT-SDGSLYALDAKTGKVLWSIYLTSSP----PAG--VRSSSSPAV--D 121 (238)
T ss_dssp --------------SCGGSGE-EEETTEEEEEE-TTSEEEEEETTTSCEEEEEEE-SSC----TCS--TB--SEEEE--E
T ss_pred --------------cccccee-eeccccccccc-ceeeeEecccCCcceeeeecccccc----ccc--cccccCceE--e
Confidence 0000001 22344444433 6889999999999887762 21110 000 111122222 3
Q ss_pred CCEEEEEecCCeEEEEEcccCCCCceEeeeeceece-------eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCce
Q 010390 286 GVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIES-------FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIK 358 (512)
Q Consensus 286 ~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~-------~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~ 358 (512)
+..++++..++.|..+|..+++..-........... ....+.+. ++ .++.++.++.+.-+|+.+++.. ..
T Consensus 122 ~~~~~~~~~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~-~~-~v~~~~~~g~~~~~d~~tg~~~-w~ 198 (238)
T PF13360_consen 122 GDRLYVGTSSGKLVALDPKTGKLLWKYPVGEPRGSSPISSFSDINGSPVIS-DG-RVYVSSGDGRVVAVDLATGEKL-WS 198 (238)
T ss_dssp TTEEEEEETCSEEEEEETTTTEEEEEEESSTT-SS--EEEETTEEEEEECC-TT-EEEEECCTSSEEEEETTTTEEE-EE
T ss_pred cCEEEEEeccCcEEEEecCCCcEEEEeecCCCCCCcceeeecccccceEEE-CC-EEEEEcCCCeEEEEECCCCCEE-EE
Confidence 778888888999999998765432222221111000 11222333 44 6666766775444499888743 22
Q ss_pred eccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 359 LKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
.. ...+..+ ...++ ..|+.++.++.|..||+.+|+.+
T Consensus 199 ~~--~~~~~~~-~~~~~-~~l~~~~~~~~l~~~d~~tG~~~ 235 (238)
T PF13360_consen 199 KP--ISGIYSL-PSVDG-GTLYVTSSDGRLYALDLKTGKVV 235 (238)
T ss_dssp EC--SS-ECEC-EECCC-TEEEEEETTTEEEEEETTTTEEE
T ss_pred ec--CCCccCC-ceeeC-CEEEEEeCCCEEEEEECCCCCEE
Confidence 22 2223332 23455 57777779999999999999853
No 318
>PRK11138 outer membrane biogenesis protein BamB; Provisional
Probab=98.49 E-value=0.00011 Score=70.27 Aligned_cols=265 Identities=10% Similarity=0.043 Sum_probs=145.1
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEE-EEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFD-LCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~-l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
+..++.++.+|.+.-+|.++++..- +.... +.+.+ ... .+..++.+..++.|.-+|.++|+.+
T Consensus 120 ~~~v~v~~~~g~l~ald~~tG~~~W-------------~~~~~-~~~~ssP~v--~~~~v~v~~~~g~l~ald~~tG~~~ 183 (394)
T PRK11138 120 GGKVYIGSEKGQVYALNAEDGEVAW-------------QTKVA-GEALSRPVV--SDGLVLVHTSNGMLQALNESDGAVK 183 (394)
T ss_pred CCEEEEEcCCCEEEEEECCCCCCcc-------------cccCC-CceecCCEE--ECCEEEEECCCCEEEEEEccCCCEe
Confidence 4566778889999999998875421 11111 11211 111 2446677778999999999999988
Q ss_pred ecccCcCCCE-----EEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecc-
Q 010390 144 GALMGHTGSI-----KSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRK- 217 (512)
Q Consensus 144 ~~~~~h~~~v-----~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~- 217 (512)
..+......+ .+-... + ..++.++.+|.+..+|..+++.......... .+. .....+.
T Consensus 184 W~~~~~~~~~~~~~~~sP~v~--~-~~v~~~~~~g~v~a~d~~~G~~~W~~~~~~~-------~~~------~~~~~~~~ 247 (394)
T PRK11138 184 WTVNLDVPSLTLRGESAPATA--F-GGAIVGGDNGRVSAVLMEQGQLIWQQRISQP-------TGA------TEIDRLVD 247 (394)
T ss_pred eeecCCCCcccccCCCCCEEE--C-CEEEEEcCCCEEEEEEccCChhhheeccccC-------CCc------cchhcccc
Confidence 7665321110 011111 2 3566677889999999888765432211000 000 0000000
Q ss_pred cccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCe
Q 010390 218 AASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHR 297 (512)
Q Consensus 218 ~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~ 297 (512)
....++ . .+..+++++ .+|.+..+|..+++........ ....+.. .+..++.++.+|.
T Consensus 248 ~~~sP~----v--~~~~vy~~~-~~g~l~ald~~tG~~~W~~~~~-------------~~~~~~~--~~~~vy~~~~~g~ 305 (394)
T PRK11138 248 VDTTPV----V--VGGVVYALA-YNGNLVALDLRSGQIVWKREYG-------------SVNDFAV--DGGRIYLVDQNDR 305 (394)
T ss_pred cCCCcE----E--ECCEEEEEE-cCCeEEEEECCCCCEEEeecCC-------------CccCcEE--ECCEEEEEcCCCe
Confidence 000111 1 234455434 6899999999998876643211 0111222 4557777888999
Q ss_pred EEEEEcccCCCCceEe-eeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE-EEeCCCC
Q 010390 298 IYLYNVLQLDKGPIQH-FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA-VNWCPNE 375 (512)
Q Consensus 298 i~i~d~~~~~~~~~~~-~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~-v~~~~~~ 375 (512)
+..+|..+++..-... ........ ... .+..|+.++.+|.+++.|..+++.. ....-....+.+ ..+ .+
T Consensus 306 l~ald~~tG~~~W~~~~~~~~~~~s----p~v--~~g~l~v~~~~G~l~~ld~~tG~~~-~~~~~~~~~~~s~P~~--~~ 376 (394)
T PRK11138 306 VYALDTRGGVELWSQSDLLHRLLTA----PVL--YNGYLVVGDSEGYLHWINREDGRFV-AQQKVDSSGFLSEPVV--AD 376 (394)
T ss_pred EEEEECCCCcEEEcccccCCCcccC----CEE--ECCEEEEEeCCCEEEEEECCCCCEE-EEEEcCCCcceeCCEE--EC
Confidence 9999986643211000 00111111 111 2567888899999999999888653 232222222222 222 23
Q ss_pred CCeEEEEeCCCcEEEEeC
Q 010390 376 AGKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 376 ~~~l~s~~~dg~i~vwd~ 393 (512)
..|+.++.||.|+.+++
T Consensus 377 -~~l~v~t~~G~l~~~~~ 393 (394)
T PRK11138 377 -DKLLIQARDGTVYAITR 393 (394)
T ss_pred -CEEEEEeCCceEEEEeC
Confidence 47888899999988764
No 319
>PF13360 PQQ_2: PQQ-like domain; PDB: 3HXJ_B 1YIQ_A 1KV9_A 3Q54_A 2YH3_A 3PRW_A 3P1L_A 3Q7M_A 3Q7O_A 3Q7N_A ....
Probab=98.49 E-value=1.3e-05 Score=70.87 Aligned_cols=199 Identities=19% Similarity=0.137 Sum_probs=112.1
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc-cccceeee
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN-CAESFVFS 197 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~-~~~~~~~~ 197 (512)
++..+++++.++.|..||..+|+.+..+.. ...+...... .+ ..++.++.++.|..+|..+++..... ...
T Consensus 35 ~~~~v~~~~~~~~l~~~d~~tG~~~W~~~~-~~~~~~~~~~-~~-~~v~v~~~~~~l~~~d~~tG~~~W~~~~~~----- 106 (238)
T PF13360_consen 35 DGGRVYVASGDGNLYALDAKTGKVLWRFDL-PGPISGAPVV-DG-GRVYVGTSDGSLYALDAKTGKVLWSIYLTS----- 106 (238)
T ss_dssp ETTEEEEEETTSEEEEEETTTSEEEEEEEC-SSCGGSGEEE-ET-TEEEEEETTSEEEEEETTTSCEEEEEEE-S-----
T ss_pred eCCEEEEEcCCCEEEEEECCCCCEEEEeec-cccccceeee-cc-cccccccceeeeEecccCCcceeeeecccc-----
Confidence 567788888999999999999998877654 2221111121 23 56677778889999998887754321 000
Q ss_pred cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCe
Q 010390 198 SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 198 ~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
..... ..........+..+++.. .++.|..+|.++++................. ....+
T Consensus 107 ------------------~~~~~-~~~~~~~~~~~~~~~~~~-~~g~l~~~d~~tG~~~w~~~~~~~~~~~~~~-~~~~~ 165 (238)
T PF13360_consen 107 ------------------SPPAG-VRSSSSPAVDGDRLYVGT-SSGKLVALDPKTGKLLWKYPVGEPRGSSPIS-SFSDI 165 (238)
T ss_dssp ------------------SCTCS-TB--SEEEEETTEEEEEE-TCSEEEEEETTTTEEEEEEESSTT-SS--EE-EETTE
T ss_pred ------------------ccccc-cccccCceEecCEEEEEe-ccCcEEEEecCCCcEEEEeecCCCCCCccee-eeccc
Confidence 00000 111222222366666644 5999999999999887665432211000000 11112
Q ss_pred eEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 278 SSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
..-....++ .++.+..++.+..+|+.+.+. + .... ... .. .....++..|+.++.++.|..||+.+++.
T Consensus 166 ~~~~~~~~~-~v~~~~~~g~~~~~d~~tg~~--~--w~~~-~~~-~~-~~~~~~~~~l~~~~~~~~l~~~d~~tG~~ 234 (238)
T PF13360_consen 166 NGSPVISDG-RVYVSSGDGRVVAVDLATGEK--L--WSKP-ISG-IY-SLPSVDGGTLYVTSSDGRLYALDLKTGKV 234 (238)
T ss_dssp EEEEECCTT-EEEEECCTSSEEEEETTTTEE--E--EEEC-SS--EC-ECEECCCTEEEEEETTTEEEEEETTTTEE
T ss_pred ccceEEECC-EEEEEcCCCeEEEEECCCCCE--E--EEec-CCC-cc-CCceeeCCEEEEEeCCCEEEEEECCCCCE
Confidence 222222344 677777777544348866441 1 1111 111 11 11346778888887899999999998865
No 320
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=98.48 E-value=0.00045 Score=58.14 Aligned_cols=104 Identities=13% Similarity=0.054 Sum_probs=67.3
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
-|++++.|+..|.+++-+.+++.. ...+..-..--......+++..+..|+.|++.+..|..+..++
T Consensus 62 vgdfVV~GCy~g~lYfl~~~tGs~-------------~w~f~~~~~vk~~a~~d~~~glIycgshd~~~yalD~~~~~cV 128 (354)
T KOG4649|consen 62 VGDFVVLGCYSGGLYFLCVKTGSQ-------------IWNFVILETVKVRAQCDFDGGLIYCGSHDGNFYALDPKTYGCV 128 (354)
T ss_pred ECCEEEEEEccCcEEEEEecchhh-------------eeeeeehhhhccceEEcCCCceEEEecCCCcEEEecccccceE
Confidence 367899999999999999988743 2222221111112234568999999999999999999999988
Q ss_pred ecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 144 GALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 144 ~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
...+...+.-.+-+..|-. ..|..+...|.|.--..+
T Consensus 129 ykskcgG~~f~sP~i~~g~-~sly~a~t~G~vlavt~~ 165 (354)
T KOG4649|consen 129 YKSKCGGGTFVSPVIAPGD-GSLYAAITAGAVLAVTKN 165 (354)
T ss_pred EecccCCceeccceecCCC-ceEEEEeccceEEEEccC
Confidence 8876444333344455533 344444555655544443
No 321
>KOG1832 consensus HIV-1 Vpr-binding protein [Cell cycle control, cell division, chromosome partitioning]
Probab=98.48 E-value=2.2e-07 Score=90.14 Aligned_cols=221 Identities=13% Similarity=0.130 Sum_probs=147.6
Q ss_pred cceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC-cEEE
Q 010390 99 ARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG-SFAI 177 (512)
Q Consensus 99 ~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg-~i~v 177 (512)
+..+.+..|....+|++|+-+.++|+.|+..|.|+++++.+|.......+|..+|+-+.-+.++..+|.+++... -..+
T Consensus 1092 r~w~~frd~~~~fTc~afs~~~~hL~vG~~~Geik~~nv~sG~~e~s~ncH~SavT~vePs~dgs~~Ltsss~S~PlsaL 1171 (1516)
T KOG1832|consen 1092 RSWRSFRDETALFTCIAFSGGTNHLAVGSHAGEIKIFNVSSGSMEESVNCHQSAVTLVEPSVDGSTQLTSSSSSSPLSAL 1171 (1516)
T ss_pred ccchhhhccccceeeEEeecCCceEEeeeccceEEEEEccCccccccccccccccccccccCCcceeeeeccccCchHHH
Confidence 446677889999999999999999999999999999999999999999999999999998888855555555544 5778
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
|++....... ..-..-.++.|+.....-+. |.......+||+.++....
T Consensus 1172 W~~~s~~~~~------------------------------Hsf~ed~~vkFsn~~q~r~~-gt~~d~a~~YDvqT~~~l~ 1220 (1516)
T KOG1832|consen 1172 WDASSTGGPR------------------------------HSFDEDKAVKFSNSLQFRAL-GTEADDALLYDVQTCSPLQ 1220 (1516)
T ss_pred hccccccCcc------------------------------ccccccceeehhhhHHHHHh-cccccceEEEecccCcHHH
Confidence 9986421111 01123456677655333333 5456779999999988776
Q ss_pred cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEE
Q 010390 258 TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILS 337 (512)
Q Consensus 258 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~ 337 (512)
+...+.. .....-++..|+|+..+++ .|| .+||++.. ..+..+..... ...-.|+|.|.-++.
T Consensus 1221 tylt~~~-------~~~y~~n~a~FsP~D~LIl---ndG--vLWDvR~~--~aIh~FD~ft~---~~~G~FHP~g~eVII 1283 (1516)
T KOG1832|consen 1221 TYLTDTV-------TSSYSNNLAHFSPCDTLIL---NDG--VLWDVRIP--EAIHRFDQFTD---YGGGGFHPSGNEVII 1283 (1516)
T ss_pred HhcCcch-------hhhhhccccccCCCcceEe---eCc--eeeeeccH--HHHhhhhhhee---cccccccCCCceEEe
Confidence 5433221 1112236788999887765 344 47998764 23333332221 112468999998887
Q ss_pred ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCC
Q 010390 338 GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNE 375 (512)
Q Consensus 338 g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~ 375 (512)
.+ .|||+++.+.... .. .-.-..|.|+..|
T Consensus 1284 NS-----EIwD~RTF~lLh~-VP--~Ldqc~VtFNstG 1313 (1516)
T KOG1832|consen 1284 NS-----EIWDMRTFKLLHS-VP--SLDQCAVTFNSTG 1313 (1516)
T ss_pred ec-----hhhhhHHHHHHhc-Cc--cccceEEEeccCc
Confidence 65 4899988654311 11 1123456676666
No 322
>KOG2114 consensus Vacuolar assembly/sorting protein PEP5/VPS11 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.47 E-value=2.3e-05 Score=76.39 Aligned_cols=209 Identities=10% Similarity=0.113 Sum_probs=128.8
Q ss_pred eeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc-EEEEEEeecCCEEE
Q 010390 158 SHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS-ITSVLYLKDEVSIA 236 (512)
Q Consensus 158 ~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~~~~~~~~~~l~ 236 (512)
|++.+ ..++.|+.+|.|.+.+-.-. ....+.++... +..+....+...++
T Consensus 31 ~~s~~-~~vvigt~~G~V~~Ln~s~~----------------------------~~~~fqa~~~siv~~L~~~~~~~~L~ 81 (933)
T KOG2114|consen 31 CSSST-GSVVIGTADGRVVILNSSFQ----------------------------LIRGFQAYEQSIVQFLYILNKQNFLF 81 (933)
T ss_pred EcCCC-ceEEEeeccccEEEecccce----------------------------eeehheecchhhhhHhhcccCceEEE
Confidence 55555 78999999999888764311 11122333334 33333333335666
Q ss_pred EEeecCC----eEEEEeccCcccee--cccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc
Q 010390 237 TASAVNS----IVKFWDTRNLKAQI--TQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP 310 (512)
Q Consensus 237 ~~g~~dg----~i~iwd~~~~~~~~--~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 310 (512)
+.|-.++ .|++||++..+... .....+............++.+++++.+-+.+++|-.+|.|..+.-.-.....
T Consensus 82 sv~Ed~~~np~llkiw~lek~~~n~sP~c~~~~ri~~~~np~~~~p~s~l~Vs~~l~~Iv~Gf~nG~V~~~~GDi~RDrg 161 (933)
T KOG2114|consen 82 SVGEDEQGNPVLLKIWDLEKVDKNNSPQCLYEHRIFTIKNPTNPSPASSLAVSEDLKTIVCGFTNGLVICYKGDILRDRG 161 (933)
T ss_pred EEeecCCCCceEEEEecccccCCCCCcceeeeeeeeccCCCCCCCcceEEEEEccccEEEEEecCcEEEEEcCcchhccc
Confidence 6664444 69999998643111 00000000000112235678899999999999999999999998642222222
Q ss_pred eEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390 311 IQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 311 ~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 390 (512)
.+..-.+.....++.+++..++..++-......|.+|.+.........+..|...+.|..+++.. ..++.++. ..+.+
T Consensus 162 sr~~~~~~~~~pITgL~~~~d~~s~lFv~Tt~~V~~y~l~gr~p~~~~ld~~G~~lnCss~~~~t-~qfIca~~-e~l~f 239 (933)
T KOG2114|consen 162 SRQDYSHRGKEPITGLALRSDGKSVLFVATTEQVMLYSLSGRTPSLKVLDNNGISLNCSSFSDGT-YQFICAGS-EFLYF 239 (933)
T ss_pred cceeeeccCCCCceeeEEecCCceeEEEEecceeEEEEecCCCcceeeeccCCccceeeecCCCC-ccEEEecC-ceEEE
Confidence 33344455567789999999988733223345699999985553344577888899999999876 44555544 35999
Q ss_pred EeCCCCc
Q 010390 391 WSLENSR 397 (512)
Q Consensus 391 wd~~~~~ 397 (512)
|+.+...
T Consensus 240 Y~sd~~~ 246 (933)
T KOG2114|consen 240 YDSDGRG 246 (933)
T ss_pred EcCCCcc
Confidence 9987544
No 323
>KOG1920 consensus IkappaB kinase complex, IKAP component [Transcription]
Probab=98.42 E-value=9.2e-05 Score=75.24 Aligned_cols=203 Identities=13% Similarity=0.127 Sum_probs=129.5
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD 129 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 129 (512)
.+.|.++.| .-+++-++.+...|.|.+-|.++... ...-.-.+.|.+++|+||++.++..+.+
T Consensus 68 d~~i~s~~f---l~d~~~i~v~~~~G~iilvd~et~~~--------------eivg~vd~GI~aaswS~Dee~l~liT~~ 130 (1265)
T KOG1920|consen 68 DDEIVSVQF---LADTNSICVITALGDIILVDPETLEL--------------EIVGNVDNGISAASWSPDEELLALITGR 130 (1265)
T ss_pred CcceEEEEE---ecccceEEEEecCCcEEEEcccccce--------------eeeeeccCceEEEeecCCCcEEEEEeCC
Confidence 367888888 77888888899999999998766532 1122345799999999999999988888
Q ss_pred CcEEEEeC----CC-------------------CeeeecccCc---------------------CCCEEEEEeeCCCCCe
Q 010390 130 QTIKIWDA----EK-------------------KKCTGALMGH---------------------TGSIKSLCSHPTNSDI 165 (512)
Q Consensus 130 g~i~iwd~----~~-------------------~~~~~~~~~h---------------------~~~v~~l~~~~~~~~~ 165 (512)
+++.+-.- -. |+....|++. .+.=++|+|--+| .+
T Consensus 131 ~tll~mT~~f~~i~E~~L~~d~~~~sk~v~VGwGrkeTqfrgs~gr~~~~~~~~~ek~~~~~~~~~~~~~IsWRgDg-~~ 209 (1265)
T KOG1920|consen 131 QTLLFMTKDFEPIAEKPLDADDERKSKFVNVGWGRKETQFRGSEGRQAARQKIEKEKALEQIEQDDHKTSISWRGDG-EY 209 (1265)
T ss_pred cEEEEEeccccchhccccccccccccccceecccccceeeecchhhhcccccccccccccchhhccCCceEEEccCC-cE
Confidence 87766432 00 0111112210 1112358898887 77
Q ss_pred EEEEe----CC-CcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee
Q 010390 166 LVSGS----RD-GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA 240 (512)
Q Consensus 166 l~s~~----~d-g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~ 240 (512)
+++.. .+ ..|++||-+ +...... ....+.-.+++|-|.|..+++...
T Consensus 210 fAVs~~~~~~~~RkirV~drE-g~Lns~s---------------------------e~~~~l~~~LsWkPsgs~iA~iq~ 261 (1265)
T KOG1920|consen 210 FAVSFVESETGTRKIRVYDRE-GALNSTS---------------------------EPVEGLQHSLSWKPSGSLIAAIQC 261 (1265)
T ss_pred EEEEEEeccCCceeEEEeccc-chhhccc---------------------------CcccccccceeecCCCCeEeeeee
Confidence 77732 23 799999977 3221110 111234467899999988887542
Q ss_pred --cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEE---EecCCeEEEEEcccC
Q 010390 241 --VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTA---SCMDHRIYLYNVLQL 306 (512)
Q Consensus 241 --~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~---~~~dg~i~i~d~~~~ 306 (512)
.|+.|.+|.-+..+.-.-. . ........+..++|+.++..|++ ......|++|-+.+.
T Consensus 262 ~~sd~~IvffErNGL~hg~f~-l-------~~p~de~~ve~L~Wns~sdiLAv~~~~~e~~~v~lwt~~Ny 324 (1265)
T KOG1920|consen 262 KTSDSDIVFFERNGLRHGEFV-L-------PFPLDEKEVEELAWNSNSDILAVVTSNLENSLVQLWTTGNY 324 (1265)
T ss_pred cCCCCcEEEEecCCccccccc-c-------CCcccccchheeeecCCCCceeeeecccccceEEEEEecCe
Confidence 3567888886654332110 0 11222233899999999999987 444455999987554
No 324
>KOG1275 consensus PAB-dependent poly(A) ribonuclease, subunit PAN2 [Replication, recombination and repair]
Probab=98.37 E-value=6.2e-06 Score=80.67 Aligned_cols=148 Identities=21% Similarity=0.243 Sum_probs=114.5
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---------CCcEE
Q 010390 63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG---------DQTIK 133 (512)
Q Consensus 63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~---------dg~i~ 133 (512)
.+++++.+|...|.|.+-|.++.+. +.++.+|++.|.++.. .|+.|+++|. |..|+
T Consensus 185 ~Nnr~lf~G~t~G~V~LrD~~s~~~-------------iht~~aHs~siSDfDv--~GNlLitCG~S~R~~~l~~D~Fvk 249 (1118)
T KOG1275|consen 185 YNNRNLFCGDTRGTVFLRDPNSFET-------------IHTFDAHSGSISDFDV--QGNLLITCGYSMRRYNLAMDPFVK 249 (1118)
T ss_pred ecCcEEEeecccceEEeecCCcCce-------------eeeeeccccceeeeec--cCCeEEEeecccccccccccchhh
Confidence 4789999999999999999987654 8889999999988776 6889999886 56789
Q ss_pred EEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccc
Q 010390 134 IWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRV 213 (512)
Q Consensus 134 iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 213 (512)
|||++..+.+.-+.-+.++ .-+.|+|.-...++.++..|...+-|..+-.... ...
T Consensus 250 VYDLRmmral~PI~~~~~P-~flrf~Psl~t~~~V~S~sGq~q~vd~~~lsNP~-----------------------~~~ 305 (1118)
T KOG1275|consen 250 VYDLRMMRALSPIQFPYGP-QFLRFHPSLTTRLAVTSQSGQFQFVDTATLSNPP-----------------------AGV 305 (1118)
T ss_pred hhhhhhhhccCCcccccCc-hhhhhcccccceEEEEecccceeeccccccCCCc-----------------------cce
Confidence 9999998887777666554 4577899887889999999999999843322111 000
Q ss_pred eecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390 214 SRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT 250 (512)
Q Consensus 214 ~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~ 250 (512)
.........+..+++++++..++. |..+|.|.+|.-
T Consensus 306 ~~v~p~~s~i~~fDiSsn~~alaf-gd~~g~v~~wa~ 341 (1118)
T KOG1275|consen 306 KMVNPNGSGISAFDISSNGDALAF-GDHEGHVNLWAD 341 (1118)
T ss_pred eEEccCCCcceeEEecCCCceEEE-ecccCcEeeecC
Confidence 111222345899999999999988 668999999973
No 325
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=98.36 E-value=0.00016 Score=69.26 Aligned_cols=114 Identities=12% Similarity=0.116 Sum_probs=87.3
Q ss_pred EEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEE
Q 010390 56 VSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIW 135 (512)
Q Consensus 56 v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iw 135 (512)
|.+-+++..+++++.|+.-|.+++|+-..+.. ......+-.+.+..+..+++..++|.|+..|.|.|+
T Consensus 36 v~lTc~dst~~~l~~GsS~G~lyl~~R~~~~~------------~~~~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 36 VKLTCVDATEEYLAMGSSAGSVYLYNRHTGEM------------RKLKNEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred EEEEEeecCCceEEEecccceEEEEecCchhh------------hcccccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 33444477899999999999999999876542 122333355667778888888888899999999999
Q ss_pred eCCCCeeee-----cc-cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 136 DAEKKKCTG-----AL-MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 136 d~~~~~~~~-----~~-~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
-++.+.+.. .. ..|...|++++|++++ ..+++|...|.|.+-.+..
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~-~k~ysGD~~Gkv~~~~L~s 155 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNG-MKLYSGDSQGKVVLTELDS 155 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccc-cEEeecCCCceEEEEEech
Confidence 887643211 11 2378899999999988 8999999999999988875
No 326
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.32 E-value=3.6e-07 Score=85.58 Aligned_cols=207 Identities=18% Similarity=0.280 Sum_probs=135.7
Q ss_pred CCEEEEEeeCCCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390 151 GSIKSLCSHPTNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL 229 (512)
Q Consensus 151 ~~v~~l~~~~~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 229 (512)
..+.|+++.-+.. .+++.|..+|.|-+-.++..... ......++....++++|+
T Consensus 57 qy~kcva~~y~~d~cIlavG~atG~I~l~s~r~~hdS-------------------------s~E~tp~~ar~Ct~lAwn 111 (783)
T KOG1008|consen 57 QYVKCVASFYGNDRCILAVGSATGNISLLSVRHPHDS-------------------------SAEVTPGYARPCTSLAWN 111 (783)
T ss_pred CCceeehhhcCCchhhhhhccccCceEEeecCCcccc-------------------------cceecccccccccccccc
Confidence 3566666554432 57888889999999888754322 111334566788999999
Q ss_pred ecCCEEEEEee----cCCeEEEEeccCccceecccCCCcccccccc-ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc
Q 010390 230 KDEVSIATASA----VNSIVKFWDTRNLKAQITQAWPHAESSSAKE-TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304 (512)
Q Consensus 230 ~~~~~l~~~g~----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~-~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 304 (512)
+-....+++|- .|..+.|||+.+.-....... .+. ....+..+++|..+.+.+++|.....+.++|++
T Consensus 112 eLDtn~LAagldkhrnds~~~Iwdi~s~ltvPke~~-------~fs~~~l~gqns~cwlrd~klvlaGm~sr~~~ifdlR 184 (783)
T KOG1008|consen 112 ELDTNHLAAGLDKHRNDSSLKIWDINSLLTVPKESP-------LFSSSTLDGQNSVCWLRDTKLVLAGMTSRSVHIFDLR 184 (783)
T ss_pred cccHHHHHhhhhhhcccCCccceecccccCCCcccc-------ccccccccCccccccccCcchhhcccccchhhhhhhh
Confidence 86555555563 356799999987633111110 111 234456689999999999999999999999997
Q ss_pred cCCCCceEeeeeceeceeEEEEEECC-CCCEEEEecCCCCEEEEe-cCCCCCCCceecccc----CCeEEEEeCCCCCCe
Q 010390 305 QLDKGPIQHFSGCRIESFYVKSEICP-NASHILSGSSDGNAYVWQ-VNKPQADPIKLKSHD----GEVTAVNWCPNEAGK 378 (512)
Q Consensus 305 ~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~l~~g~~dg~i~iw~-~~~~~~~~~~~~~h~----~~v~~v~~~~~~~~~ 378 (512)
..... ...+. ...+..+..+| .++++++-. ||.|.+|| ..+-+.+.......+ ..+..++|+|....+
T Consensus 185 qs~~~-~~svn----Tk~vqG~tVdp~~~nY~cs~~-dg~iAiwD~~rnienpl~~i~~~~N~~~~~l~~~aycPtrtgl 258 (783)
T KOG1008|consen 185 QSLDS-VSSVN----TKYVQGITVDPFSPNYFCSNS-DGDIAIWDTYRNIENPLQIILRNENKKPKQLFALAYCPTRTGL 258 (783)
T ss_pred hhhhh-hhhhh----hhhcccceecCCCCCceeccc-cCceeeccchhhhccHHHHHhhCCCCcccceeeEEeccCCcch
Confidence 42111 11111 11234467778 678887766 99999999 444444333332222 249999999988788
Q ss_pred EEEEeCC-CcEEEEeCCC
Q 010390 379 IVTSSDD-YTVRLWSLEN 395 (512)
Q Consensus 379 l~s~~~d-g~i~vwd~~~ 395 (512)
+++...| ++|+++|+..
T Consensus 259 la~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 259 LAVLSRDSITIRLYDICV 276 (783)
T ss_pred hhhhccCcceEEEecccc
Confidence 8888866 7899999864
No 327
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=98.28 E-value=1.7e-05 Score=74.52 Aligned_cols=80 Identities=14% Similarity=0.209 Sum_probs=64.2
Q ss_pred EeecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCE
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTN 122 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~ 122 (512)
..........|.++++ +|+.+.|+.|+.||.|.+||...+ +..+..+.-..+.++|+|+|..
T Consensus 252 svtsipL~s~v~~ca~---sp~E~kLvlGC~DgSiiLyD~~~~---------------~t~~~ka~~~P~~iaWHp~gai 313 (545)
T PF11768_consen 252 SVTSIPLPSQVICCAR---SPSEDKLVLGCEDGSIILYDTTRG---------------VTLLAKAEFIPTLIAWHPDGAI 313 (545)
T ss_pred EEEEEecCCcceEEec---CcccceEEEEecCCeEEEEEcCCC---------------eeeeeeecccceEEEEcCCCcE
Confidence 3334456667777777 999999999999999999998765 3333344556889999999999
Q ss_pred EEEEeCCCcEEEEeCCCC
Q 010390 123 ILTASGDQTIKIWDAEKK 140 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~ 140 (512)
+++|+..|.+.+||+.-.
T Consensus 314 ~~V~s~qGelQ~FD~ALs 331 (545)
T PF11768_consen 314 FVVGSEQGELQCFDMALS 331 (545)
T ss_pred EEEEcCCceEEEEEeecC
Confidence 999999999999998643
No 328
>KOG2066 consensus Vacuolar assembly/sorting protein VPS41 [Intracellular trafficking, secretion, and vesicular transport]
Probab=98.24 E-value=7.3e-05 Score=72.55 Aligned_cols=146 Identities=12% Similarity=0.163 Sum_probs=97.7
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecC-----CCEEEEEeCCCcEEEEeCC
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKE-----DTNILTASGDQTIKIWDAE 138 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~-----~~~l~s~~~dg~i~iwd~~ 138 (512)
+|.++|+|+.||.|.|-.+-+... ..++ ....++.+++++|+ .+++++||.-| +.++.-.
T Consensus 82 ~Gey~asCS~DGkv~I~sl~~~~~-------------~~~~-df~rpiksial~Pd~~~~~sk~fv~GG~ag-lvL~er~ 146 (846)
T KOG2066|consen 82 EGEYVASCSDDGKVVIGSLFTDDE-------------ITQY-DFKRPIKSIALHPDFSRQQSKQFVSGGMAG-LVLSERN 146 (846)
T ss_pred CCceEEEecCCCcEEEeeccCCcc-------------ceeE-ecCCcceeEEeccchhhhhhhheeecCcce-EEEehhh
Confidence 589999999999999998766532 2222 23578999999997 57899999988 7776522
Q ss_pred --CCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceec
Q 010390 139 --KKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRR 216 (512)
Q Consensus 139 --~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 216 (512)
..+....+..-.++|.++.|. + +++|=+..+| |++||+...+.+....... ..
T Consensus 147 wlgnk~~v~l~~~eG~I~~i~W~--g-~lIAWand~G-v~vyd~~~~~~l~~i~~p~---------------------~~ 201 (846)
T KOG2066|consen 147 WLGNKDSVVLSEGEGPIHSIKWR--G-NLIAWANDDG-VKVYDTPTRQRLTNIPPPS---------------------QS 201 (846)
T ss_pred hhcCccceeeecCccceEEEEec--C-cEEEEecCCC-cEEEeccccceeeccCCCC---------------------CC
Confidence 111122455567899999997 3 7777777664 8999998776554332211 00
Q ss_pred ccccccEEEEEEeecCCEEEEEeecCCeEEEEeccC
Q 010390 217 KAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRN 252 (512)
Q Consensus 217 ~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~ 252 (512)
...+.....+.|.++.+.++ | ...+|++..++.
T Consensus 202 ~R~e~fpphl~W~~~~~LVI--G-W~d~v~i~~I~~ 234 (846)
T KOG2066|consen 202 VRPELFPPHLHWQDEDRLVI--G-WGDSVKICSIKK 234 (846)
T ss_pred CCcccCCCceEecCCCeEEE--e-cCCeEEEEEEec
Confidence 11122344577776665554 5 577899998883
No 329
>PRK02888 nitrous-oxide reductase; Validated
Probab=98.23 E-value=0.00043 Score=67.03 Aligned_cols=242 Identities=12% Similarity=0.049 Sum_probs=122.6
Q ss_pred cCCCcEEEEeeC-CCcEEEEECCCCCCccccccccccccceeccc--cCCCcEEE-----EEEecCCCEEE-EEeCCCcE
Q 010390 62 SKNSHIFAVSDE-DGYVSLFDSRRKLPSFACHRENAEKARISDWV--AHQNAIFD-----LCWIKEDTNIL-TASGDQTI 132 (512)
Q Consensus 62 s~~~~~latg~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~--~h~~~V~~-----l~~s~~~~~l~-s~~~dg~i 132 (512)
..||+||..-.. ++.|-..+++..+......-.+.....-..+. .+++-|.+ +=+.|||+.+. +.-..+.+
T Consensus 138 ~ydGr~~findk~n~Rvari~l~~~~~~~i~~iPn~~~~Hg~~~~~~p~t~yv~~~~e~~~PlpnDGk~l~~~~ey~~~v 217 (635)
T PRK02888 138 TYDGRYLFINDKANTRVARIRLDVMKCDKITELPNVQGIHGLRPQKIPRTGYVFCNGEFRIPLPNDGKDLDDPKKYRSLF 217 (635)
T ss_pred ccceeEEEEecCCCcceEEEECccEeeceeEeCCCccCccccCccccCCccEEEeCcccccccCCCCCEeecccceeEEE
Confidence 457888888764 55666666665433221111111000000111 12233322 33455676554 33335678
Q ss_pred EEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----CcEEEEeCCCCCCCCCccc---------cceee-e-
Q 010390 133 KIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----GSFAIWDLRCKSSPKSNCA---------ESFVF-S- 197 (512)
Q Consensus 133 ~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----g~i~vwd~~~~~~~~~~~~---------~~~~~-~- 197 (512)
.+.|.++.+...++.-- +....+.+++++ .++++.+.+ .++..-+.........+.. ..... .
T Consensus 218 SvID~etmeV~~qV~Vd-gnpd~v~~spdG-k~afvTsyNsE~G~tl~em~a~e~d~~vvfni~~iea~vkdGK~~~V~g 295 (635)
T PRK02888 218 TAVDAETMEVAWQVMVD-GNLDNVDTDYDG-KYAFSTCYNSEEGVTLAEMMAAERDWVVVFNIARIEEAVKAGKFKTIGG 295 (635)
T ss_pred EEEECccceEEEEEEeC-CCcccceECCCC-CEEEEeccCcccCcceeeeccccCceEEEEchHHHHHhhhCCCEEEECC
Confidence 88888887776665432 244567788887 555555421 1222222211110000000 00000 0
Q ss_pred --cccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc
Q 010390 198 --SAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH 275 (512)
Q Consensus 198 --~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 275 (512)
.....................-......+.++|||+++++++..+..|.+.|+.+.+....-.............-..
T Consensus 296 n~V~VID~~t~~~~~~~v~~yIPVGKsPHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevevGl 375 (635)
T PRK02888 296 SKVPVVDGRKAANAGSALTRYVPVPKNPHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPELGL 375 (635)
T ss_pred CEEEEEECCccccCCcceEEEEECCCCccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeeccCC
Confidence 000000000000012223333455677899999999999999999999999999866432111110000001111123
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
.....+|+++|....+-..|..|..||+..
T Consensus 376 GPLHTaFDg~G~aytslf~dsqv~kwn~~~ 405 (635)
T PRK02888 376 GPLHTAFDGRGNAYTTLFLDSQIVKWNIEA 405 (635)
T ss_pred CcceEEECCCCCEEEeEeecceeEEEehHH
Confidence 455688999999888888999999999865
No 330
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=98.18 E-value=0.0027 Score=60.50 Aligned_cols=221 Identities=14% Similarity=0.184 Sum_probs=110.9
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQS 210 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 210 (512)
.|.||+. .|+.+.++.-..+.|.++.|..+ ..|+....||.++++|+.... .... .
T Consensus 62 ~I~iys~-sG~ll~~i~w~~~~iv~~~wt~~--e~LvvV~~dG~v~vy~~~G~~-~fsl--~------------------ 117 (410)
T PF04841_consen 62 SIQIYSS-SGKLLSSIPWDSGRIVGMGWTDD--EELVVVQSDGTVRVYDLFGEF-QFSL--G------------------ 117 (410)
T ss_pred EEEEECC-CCCEeEEEEECCCCEEEEEECCC--CeEEEEEcCCEEEEEeCCCce-eech--h------------------
Confidence 4999985 56666666544489999999874 467777899999999986433 1000 0
Q ss_pred ccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc-CeeE-EEeCCCCCE
Q 010390 211 KRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH-GISS-LSQDSNGVF 288 (512)
Q Consensus 211 ~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~-~~~~~~~~~ 288 (512)
.........+..+....+..+|-.+++ .++.+.+.+-.............+.. ....+.. .... ..++.+...
T Consensus 118 ~~i~~~~v~e~~i~~~~~~~~GivvLt---~~~~~~~v~n~~~~~~~~~~~~~p~~--~~~~~~~~~~~~i~~l~~~~~~ 192 (410)
T PF04841_consen 118 EEIEEEKVLECRIFAIWFYKNGIVVLT---GNNRFYVVNNIDEPVKLRRLPEIPGL--WTKFHWWPSWTVIPLLSSDRVV 192 (410)
T ss_pred hhccccCcccccccccccCCCCEEEEC---CCCeEEEEeCccccchhhccccCCCc--ccccccccccccceEeecCcce
Confidence 000001111112222233334422222 24444443222211111100000000 0000000 1111 334455555
Q ss_pred EEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec-cccCCeE
Q 010390 289 LTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK-SHDGEVT 367 (512)
Q Consensus 289 l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~-~h~~~v~ 367 (512)
.+....++.+.+.+-..... + .....+..+++||++++||.-..+|.+.+.+.+-.+.. ..+. .-.....
T Consensus 193 ~i~~~~g~~i~~i~~~~~~~-----i---~~~~~i~~iavSpng~~iAl~t~~g~l~v~ssDf~~~~-~e~~~~~~~~p~ 263 (410)
T PF04841_consen 193 EILLANGETIYIIDENSFKQ-----I---DSDGPIIKIAVSPNGKFIALFTDSGNLWVVSSDFSEKL-CEFDTDSKSPPK 263 (410)
T ss_pred EEEEecCCEEEEEEcccccc-----c---cCCCCeEEEEECCCCCEEEEEECCCCEEEEECccccee-EEeecCcCCCCc
Confidence 55555666666555322100 1 11245788999999999999999999999876544332 2222 2245667
Q ss_pred EEEeCCCCCCeEEEEeCCCcEEEEe
Q 010390 368 AVNWCPNEAGKIVTSSDDYTVRLWS 392 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~~dg~i~vwd 392 (512)
.+.|+-++ ..++.- +..|.+..
T Consensus 264 ~~~WCG~d-av~l~~--~~~l~lvg 285 (410)
T PF04841_consen 264 QMAWCGND-AVVLSW--EDELLLVG 285 (410)
T ss_pred EEEEECCC-cEEEEe--CCEEEEEC
Confidence 78887654 333332 33455554
No 331
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=98.15 E-value=0.0029 Score=62.17 Aligned_cols=305 Identities=8% Similarity=-0.029 Sum_probs=149.7
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE--EEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF--DLCWIKEDTNILTASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~--~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 142 (512)
+..+.+++.++.|.-.|..+++..-....... ...+...+. .+... ++..++.++.++.|+-+|.++|+.
T Consensus 61 ~g~vy~~~~~g~l~AlD~~tG~~~W~~~~~~~-------~~~~~~~~~~~g~~~~-~~~~V~v~~~~g~v~AlD~~TG~~ 132 (488)
T cd00216 61 DGDMYFTTSHSALFALDAATGKVLWRYDPKLP-------ADRGCCDVVNRGVAYW-DPRKVFFGTFDGRLVALDAETGKQ 132 (488)
T ss_pred CCEEEEeCCCCcEEEEECCCChhhceeCCCCC-------ccccccccccCCcEEc-cCCeEEEecCCCeEEEEECCCCCE
Confidence 44566677789999999887754221100000 000000110 11111 226788888899999999999998
Q ss_pred eecccCcCCC-----EE-EEEeeCCCCCeEEEEe---------CCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 143 TGALMGHTGS-----IK-SLCSHPTNSDILVSGS---------RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 143 ~~~~~~h~~~-----v~-~l~~~~~~~~~l~s~~---------~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
+..+...... +. +..+. + .+++.++ .+|.|..+|..+++..-........ ....
T Consensus 133 ~W~~~~~~~~~~~~~i~ssP~v~--~-~~v~vg~~~~~~~~~~~~g~v~alD~~TG~~~W~~~~~~~~--------~~~~ 201 (488)
T cd00216 133 VWKFGNNDQVPPGYTMTGAPTIV--K-KLVIIGSSGAEFFACGVRGALRAYDVETGKLLWRFYTTEPD--------PNAF 201 (488)
T ss_pred eeeecCCCCcCcceEecCCCEEE--C-CEEEEeccccccccCCCCcEEEEEECCCCceeeEeeccCCC--------cCCC
Confidence 8776543221 11 12222 2 3444443 3678888999888765433211000 0000
Q ss_pred cccccc-eecccccccE-EEEEEeecCCEEEEEeecCC------------------eEEEEeccCccceecccCCCcccc
Q 010390 208 SQSKRV-SRRKAASMSI-TSVLYLKDEVSIATASAVNS------------------IVKFWDTRNLKAQITQAWPHAESS 267 (512)
Q Consensus 208 ~~~~~~-~~~~~~~~~v-~~~~~~~~~~~l~~~g~~dg------------------~i~iwd~~~~~~~~~~~~~~~~~~ 267 (512)
...... .........+ ...++.+.+..+++ ++.++ .|.-+|..+++.............
T Consensus 202 ~~~~~~~~~~~~~g~~vw~~pa~d~~~g~V~v-g~~~g~~~~~~~~~~~~~~~~~~~l~Ald~~tG~~~W~~~~~~~~~~ 280 (488)
T cd00216 202 PTWGPDRQMWGPGGGTSWASPTYDPKTNLVYV-GTGNGSPWNWGGRRTPGDNLYTDSIVALDADTGKVKWFYQTTPHDLW 280 (488)
T ss_pred CCCCCCcceecCCCCCccCCeeEeCCCCEEEE-ECCCCCCCccCCccCCCCCCceeeEEEEcCCCCCEEEEeeCCCCCCc
Confidence 000000 0000000111 12344444455554 32343 799999999998876532211000
Q ss_pred ccccccccC-eeEEEeCCCCC---EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEe-----
Q 010390 268 SAKETRLHG-ISSLSQDSNGV---FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSG----- 338 (512)
Q Consensus 268 ~~~~~~~~~-i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g----- 338 (512)
.......+ +..+. .-++. .+++++.+|.+..+|..+++..-...... ..++.+| ..++.+
T Consensus 281 -~~~~~s~p~~~~~~-~~~g~~~~~V~~g~~~G~l~ald~~tG~~~W~~~~~~-------~~~~~~~--~~vyv~~~~~~ 349 (488)
T cd00216 281 -DYDGPNQPSLADIK-PKDGKPVPAIVHAPKNGFFYVLDRTTGKLISARPEVE-------QPMAYDP--GLVYLGAFHIP 349 (488)
T ss_pred -ccccCCCCeEEecc-ccCCCeeEEEEEECCCceEEEEECCCCcEeeEeEeec-------cccccCC--ceEEEcccccc
Confidence 00011111 11111 11332 67788889999999987754322221110 0122333 222221
Q ss_pred -------------cCCCCEEEEecCCCCCCCceecc-cc------CCe--EEEEeCCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 339 -------------SSDGNAYVWQVNKPQADPIKLKS-HD------GEV--TAVNWCPNEAGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 339 -------------~~dg~i~iw~~~~~~~~~~~~~~-h~------~~v--~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~ 396 (512)
..+|.+.-.|+.+++.....-.+ +. .+. ..+.. .+ .+|+.++.||.|+.+|..+|
T Consensus 350 ~~~~~~~~~~~~~~~~G~l~AlD~~tG~~~W~~~~~~~~~~~~~g~~~~~~~~~~--~g-~~v~~g~~dG~l~ald~~tG 426 (488)
T cd00216 350 LGLPPQKKKRCKKPGKGGLAALDPKTGKVVWEKREGTIRDSWNIGFPHWGGSLAT--AG-NLVFAGAADGYFRAFDATTG 426 (488)
T ss_pred ccCcccccCCCCCCCceEEEEEeCCCCcEeeEeeCCccccccccCCcccCcceEe--cC-CeEEEECCCCeEEEEECCCC
Confidence 23566777777777653222111 00 111 11222 33 58888899999999999999
Q ss_pred ccccccc
Q 010390 397 RCSSMRS 403 (512)
Q Consensus 397 ~~~~~~~ 403 (512)
+.+-...
T Consensus 427 ~~lW~~~ 433 (488)
T cd00216 427 KELWKFR 433 (488)
T ss_pred ceeeEEE
Confidence 9776533
No 332
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=98.13 E-value=0.00039 Score=66.21 Aligned_cols=233 Identities=13% Similarity=0.136 Sum_probs=111.1
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
...-.+..+++ +|+|+++++++ ||.-.|+...... ....+.-...+|.+.+ .+|+-.
T Consensus 30 ~~~~~p~~ls~---npngr~v~V~g-~geY~iyt~~~~r------------------~k~~G~g~~~vw~~~n-~yAv~~ 86 (443)
T PF04053_consen 30 SCEIYPQSLSH---NPNGRFVLVCG-DGEYEIYTALAWR------------------NKAFGSGLSFVWSSRN-RYAVLE 86 (443)
T ss_dssp E-SS--SEEEE----TTSSEEEEEE-TTEEEEEETTTTE------------------EEEEEE-SEEEE-TSS-EEEEE-
T ss_pred CCCcCCeeEEE---CCCCCEEEEEc-CCEEEEEEccCCc------------------ccccCceeEEEEecCc-cEEEEE
Confidence 34556889999 99999999955 7888888743221 0122455678899855 466666
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
..++|.|+.--+.+....+... ..+..|-. | .+|...+.+ .|.+||+.+++.....
T Consensus 87 ~~~~I~I~kn~~~~~~k~i~~~-~~~~~If~---G-~LL~~~~~~-~i~~yDw~~~~~i~~i------------------ 142 (443)
T PF04053_consen 87 SSSTIKIYKNFKNEVVKSIKLP-FSVEKIFG---G-NLLGVKSSD-FICFYDWETGKLIRRI------------------ 142 (443)
T ss_dssp TTS-EEEEETTEE-TT-----S-S-EEEEE----S-SSEEEEETT-EEEEE-TTT--EEEEE------------------
T ss_pred CCCeEEEEEcCccccceEEcCC-cccceEEc---C-cEEEEECCC-CEEEEEhhHcceeeEE------------------
Confidence 6888999642233333344322 23554432 5 667766654 8999999977543322
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
. -..|..+.|++++..++..+ +..+.+++.+.........................|.+..|..+
T Consensus 143 ---------~--v~~vk~V~Ws~~g~~val~t--~~~i~il~~~~~~~~~~~~~g~e~~f~~~~E~~~~IkSg~W~~d-- 207 (443)
T PF04053_consen 143 ---------D--VSAVKYVIWSDDGELVALVT--KDSIYILKYNLEAVAAIPEEGVEDAFELIHEISERIKSGCWVED-- 207 (443)
T ss_dssp ---------S--S-E-EEEEE-TTSSEEEEE---S-SEEEEEE-HHHHHHBTTTB-GGGEEEEEEE-S--SEEEEETT--
T ss_pred ---------e--cCCCcEEEEECCCCEEEEEe--CCeEEEEEecchhcccccccCchhceEEEEEecceeEEEEEEcC--
Confidence 1 12389999999999999876 55677776553310000000000000011111456888888766
Q ss_pred EEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 288 FLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
.++-.... .|+. +..++...+..+.. .+.-+.+.+..+.+.....|+.|..+.+.
T Consensus 208 ~fiYtT~~-~lkY--l~~Ge~~~i~~ld~-----~~yllgy~~~~~~ly~~Dr~~~v~~~~ld 262 (443)
T PF04053_consen 208 CFIYTTSN-HLKY--LVNGETGIIAHLDK-----PLYLLGYLPKENRLYLIDRDGNVISYELD 262 (443)
T ss_dssp EEEEE-TT-EEEE--EETTEEEEEEE-SS-------EEEEEETTTTEEEEE-TT--EEEEE--
T ss_pred EEEEEcCC-eEEE--EEcCCcceEEEcCC-----ceEEEEEEccCCEEEEEECCCCEEEEEEC
Confidence 33333333 6665 32333323333221 12224455666677777777777777664
No 333
>KOG3617 consensus WD40 and TPR repeat-containing protein [General function prediction only]
Probab=98.11 E-value=5e-05 Score=74.00 Aligned_cols=109 Identities=16% Similarity=0.193 Sum_probs=82.2
Q ss_pred EEEEEecCCCEEEEEeC----CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390 112 FDLCWIKEDTNILTASG----DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK 187 (512)
Q Consensus 112 ~~l~~s~~~~~l~s~~~----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 187 (512)
+-..|+|...+++.++- .|.|.|+- ++|++.+... ..-.+++++|+|.. ..|+.|-.-|.+.+|...+.+.-.
T Consensus 19 ti~SWHPsePlfAVA~fS~er~GSVtIfa-dtGEPqr~Vt-~P~hatSLCWHpe~-~vLa~gwe~g~~~v~~~~~~e~ht 95 (1416)
T KOG3617|consen 19 TISSWHPSEPLFAVASFSPERGGSVTIFA-DTGEPQRDVT-YPVHATSLCWHPEE-FVLAQGWEMGVSDVQKTNTTETHT 95 (1416)
T ss_pred cccccCCCCceeEEEEecCCCCceEEEEe-cCCCCCcccc-cceehhhhccChHH-HHHhhccccceeEEEecCCceeee
Confidence 33578998888887764 58899984 6777554333 22346779999986 788888888999999877543211
Q ss_pred CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390 188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~ 251 (512)
....|..+|..+.|+++|..+++ +..-|.|.+|...
T Consensus 96 ---------------------------v~~th~a~i~~l~wS~~G~~l~t-~d~~g~v~lwr~d 131 (1416)
T KOG3617|consen 96 ---------------------------VVETHPAPIQGLDWSHDGTVLMT-LDNPGSVHLWRYD 131 (1416)
T ss_pred ---------------------------eccCCCCCceeEEecCCCCeEEE-cCCCceeEEEEee
Confidence 33467889999999999999997 5578999999876
No 334
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=98.08 E-value=0.0037 Score=57.17 Aligned_cols=297 Identities=10% Similarity=0.052 Sum_probs=122.9
Q ss_pred ecCCCcE-EEEeeCCCcE--EEEECCCCCCccccccccccccceeccccCC-CcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390 61 TSKNSHI-FAVSDEDGYV--SLFDSRRKLPSFACHRENAEKARISDWVAHQ-NAIFDLCWIKEDTNILTASGDQTIKIWD 136 (512)
Q Consensus 61 ~s~~~~~-latg~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~-~~V~~l~~s~~~~~l~s~~~dg~i~iwd 136 (512)
|.+||+. |.++..||.- .+-|+.+++ +.++..+. .......++|+++.|+-......|+-.|
T Consensus 43 ft~dG~kllF~s~~dg~~nly~lDL~t~~--------------i~QLTdg~g~~~~g~~~s~~~~~~~Yv~~~~~l~~vd 108 (386)
T PF14583_consen 43 FTDDGRKLLFASDFDGNRNLYLLDLATGE--------------ITQLTDGPGDNTFGGFLSPDDRALYYVKNGRSLRRVD 108 (386)
T ss_dssp B-TTS-EEEEEE-TTSS-EEEEEETTT-E--------------EEE---SS-B-TTT-EE-TTSSEEEEEETTTEEEEEE
T ss_pred cCCCCCEEEEEeccCCCcceEEEEcccCE--------------EEECccCCCCCccceEEecCCCeEEEEECCCeEEEEE
Confidence 4788964 4455556654 444665543 33343332 2222466778888887666667888899
Q ss_pred CCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc-cceeeeccccccccccccccccee
Q 010390 137 AEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA-ESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 137 ~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
+++.+....+......+-...|..+.....+.+.. +=. ........... ..+...........+.........
T Consensus 109 L~T~e~~~vy~~p~~~~g~gt~v~n~d~t~~~g~e-----~~~-~d~~~l~~~~~f~e~~~a~p~~~i~~idl~tG~~~~ 182 (386)
T PF14583_consen 109 LDTLEERVVYEVPDDWKGYGTWVANSDCTKLVGIE-----ISR-EDWKPLTKWKGFREFYEARPHCRIFTIDLKTGERKV 182 (386)
T ss_dssp TTT--EEEEEE--TTEEEEEEEEE-TTSSEEEEEE-----EEG-GG-----SHHHHHHHHHC---EEEEEEETTT--EEE
T ss_pred CCcCcEEEEEECCcccccccceeeCCCccEEEEEE-----Eee-hhccCccccHHHHHHHhhCCCceEEEEECCCCceeE
Confidence 99987766665555555555664322122333321 000 00000000000 000000000000000000111122
Q ss_pred cccccccEEEEEEeecCCEEEEEeecCC-----eEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE
Q 010390 216 RKAASMSITSVLYLKDEVSIATASAVNS-----IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT 290 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg-----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~ 290 (512)
.......+.-+.|+|....++.-|- .| .-+||-+++.......... ......+..=-|.+||..+.
T Consensus 183 v~~~~~wlgH~~fsP~dp~li~fCH-EGpw~~Vd~RiW~i~~dg~~~~~v~~--------~~~~e~~gHEfw~~DG~~i~ 253 (386)
T PF14583_consen 183 VFEDTDWLGHVQFSPTDPTLIMFCH-EGPWDLVDQRIWTINTDGSNVKKVHR--------RMEGESVGHEFWVPDGSTIW 253 (386)
T ss_dssp EEEESS-EEEEEEETTEEEEEEEEE--S-TTTSS-SEEEEETTS---EESS-----------TTEEEEEEEE-TTSS-EE
T ss_pred EEecCccccCcccCCCCCCEEEEec-cCCcceeceEEEEEEcCCCcceeeec--------CCCCcccccccccCCCCEEE
Confidence 2233456678889998777766553 33 1366666543322221111 11123345556788888665
Q ss_pred EEe-----cCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC----------------CEEEEec
Q 010390 291 ASC-----MDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG----------------NAYVWQV 349 (512)
Q Consensus 291 ~~~-----~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg----------------~i~iw~~ 349 (512)
--+ .+..|.-+|+.+.+...+.... ....+..++||++++-=+.|. .|+++++
T Consensus 254 y~~~~~~~~~~~i~~~d~~t~~~~~~~~~p------~~~H~~ss~Dg~L~vGDG~d~p~~v~~~~~~~~~~~p~i~~~~~ 327 (386)
T PF14583_consen 254 YDSYTPGGQDFWIAGYDPDTGERRRLMEMP------WCSHFMSSPDGKLFVGDGGDAPVDVADAGGYKIENDPWIYLFDV 327 (386)
T ss_dssp EEEEETTT--EEEEEE-TTT--EEEEEEE-------SEEEEEE-TTSSEEEEEE-------------------EEEEEET
T ss_pred EEeecCCCCceEEEeeCCCCCCceEEEeCC------ceeeeEEcCCCCEEEecCCCCCccccccccceecCCcEEEEecc
Confidence 422 2335666776654332221111 233456678998886533332 3566777
Q ss_pred CCCCCCCceecccc----------C-CeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 350 NKPQADPIKLKSHD----------G-EVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 350 ~~~~~~~~~~~~h~----------~-~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
..+.. ..+..|. . .=-...|+||+...|.++...|...||=++
T Consensus 328 ~~~~~--~~l~~h~~sw~v~~~~~q~~hPhp~FSPDgk~VlF~Sd~~G~~~vY~v~ 381 (386)
T PF14583_consen 328 EAGRF--RKLARHDTSWKVLDGDRQVTHPHPSFSPDGKWVLFRSDMEGPPAVYLVE 381 (386)
T ss_dssp TTTEE--EEEEE-------BTTBSSTT----EE-TTSSEEEEEE-TTSS-EEEEEE
T ss_pred ccCce--eeeeeccCcceeecCCCccCCCCCccCCCCCEEEEECCCCCCccEEEEe
Confidence 65432 1121121 1 124578999996667777788877777543
No 335
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.08 E-value=0.00092 Score=62.81 Aligned_cols=125 Identities=15% Similarity=0.100 Sum_probs=78.3
Q ss_pred cceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcc--------ccc---------c-------c------ccccccee
Q 010390 53 PLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSF--------ACH---------R-------E------NAEKARIS 102 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~--------~~~---------~-------~------~~~~~~~~ 102 (512)
|..|+| .++..-||+|...|.|.||.....+.-. ... . . .....+..
T Consensus 4 v~~vs~---a~~t~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~ 80 (395)
T PF08596_consen 4 VTHVSF---APETLELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLT 80 (395)
T ss_dssp EEEEEE---ETTTTEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEE
T ss_pred EEEEEe---cCCCceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchh
Confidence 556666 8888889999999999999865432211 000 0 0 01123344
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeec--ccC------cCCCEEEEEeeC----CC---CCeEE
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGA--LMG------HTGSIKSLCSHP----TN---SDILV 167 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~--~~~------h~~~v~~l~~~~----~~---~~~l~ 167 (512)
.+....++|++++.| |=-+++.|..+|.+.|.|++....+.. +.. ....|+++.|.- ++ .-.++
T Consensus 81 l~~~~~g~vtal~~S-~iGFvaigy~~G~l~viD~RGPavI~~~~i~~~~~~~~~~~~vt~ieF~vm~~~~D~ySSi~L~ 159 (395)
T PF08596_consen 81 LLDAKQGPVTALKNS-DIGFVAIGYESGSLVVIDLRGPAVIYNENIRESFLSKSSSSYVTSIEFSVMTLGGDGYSSICLL 159 (395)
T ss_dssp EE---S-SEEEEEE--BTSEEEEEETTSEEEEEETTTTEEEEEEEGGG--T-SS----EEEEEEEEEE-TTSSSEEEEEE
T ss_pred heeccCCcEeEEecC-CCcEEEEEecCCcEEEEECCCCeEEeeccccccccccccccCeeEEEEEEEecCCCcccceEEE
Confidence 445567999999998 555899999999999999987766543 111 334688888862 11 13688
Q ss_pred EEeCCCcEEEEeCC
Q 010390 168 SGSRDGSFAIWDLR 181 (512)
Q Consensus 168 s~~~dg~i~vwd~~ 181 (512)
+|...|.+.+|.+.
T Consensus 160 vGTn~G~v~~fkIl 173 (395)
T PF08596_consen 160 VGTNSGNVLTFKIL 173 (395)
T ss_dssp EEETTSEEEEEEEE
T ss_pred EEeCCCCEEEEEEe
Confidence 88999999999874
No 336
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=98.07 E-value=0.00026 Score=51.79 Aligned_cols=104 Identities=13% Similarity=0.213 Sum_probs=73.8
Q ss_pred cceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 53 PLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 53 v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
|.+++++.|..||. -|++|+.|..|+||+-+.. +..+. -.+.|++++-... ..++.+..+|+
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~~~e~---------------~~Ei~-e~~~v~~L~~~~~-~~F~Y~l~NGT 64 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFKGDEI---------------VAEIT-ETDKVTSLCSLGG-GRFAYALANGT 64 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEeCCcE---------------EEEEe-cccceEEEEEcCC-CEEEEEecCCE
Confidence 67889988877764 8999999999999985432 33333 3467888877655 67999999999
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeC---CCCCeEEEEeCCCcEE
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHP---TNSDILVSGSRDGSFA 176 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s~~~dg~i~ 176 (512)
|-+|+- .+.+..++.. ..+.++.+.. ++...|++|-.+|.|-
T Consensus 65 VGvY~~--~~RlWRiKSK-~~~~~~~~~D~~gdG~~eLI~GwsnGkve 109 (111)
T PF14783_consen 65 VGVYDR--SQRLWRIKSK-NQVTSMAFYDINGDGVPELIVGWSNGKVE 109 (111)
T ss_pred EEEEeC--cceeeeeccC-CCeEEEEEEcCCCCCceEEEEEecCCeEE
Confidence 999974 3334444432 3466666543 3445799999998774
No 337
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=98.04 E-value=0.00055 Score=64.97 Aligned_cols=190 Identities=20% Similarity=0.169 Sum_probs=111.1
Q ss_pred cccCCCcEEEEEEecCCCEEEEEe---CC-CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE--
Q 010390 104 WVAHQNAIFDLCWIKEDTNILTAS---GD-QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI-- 177 (512)
Q Consensus 104 ~~~h~~~V~~l~~s~~~~~l~s~~---~d-g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v-- 177 (512)
+..-...+..-+|+|+++.++... .. ..+.++++++++....+. ..+.-..-+|+|++..++++...||...+
T Consensus 188 l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~-~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~ 266 (425)
T COG0823 188 LTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN-FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYL 266 (425)
T ss_pred ecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-cCCccCCccCCCCCCEEEEEECCCCCccEEE
Confidence 333446777888999998876432 22 459999999886544433 22233456799999778888888886555
Q ss_pred EeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE--eccCccc
Q 010390 178 WDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW--DTRNLKA 255 (512)
Q Consensus 178 wd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw--d~~~~~~ 255 (512)
.|+....... +....+.-..-.|+|+|+.++.+++..|.-.|| +.+....
T Consensus 267 ~dl~~~~~~~----------------------------Lt~~~gi~~~Ps~spdG~~ivf~Sdr~G~p~I~~~~~~g~~~ 318 (425)
T COG0823 267 MDLDGKNLPR----------------------------LTNGFGINTSPSWSPDGSKIVFTSDRGGRPQIYLYDLEGSQV 318 (425)
T ss_pred EcCCCCccee----------------------------cccCCccccCccCCCCCCEEEEEeCCCCCcceEEECCCCCce
Confidence 4555444211 111222233567899999999988777765544 5544433
Q ss_pred eecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC-Ce--EEEEEcccCCCCceEeeeeceeceeEEEEEECCCC
Q 010390 256 QITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD-HR--IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 256 ~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d-g~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
.. .......-..-.|+|||++++..+.. |. |.+.|+..... ...+..... .....+.+++
T Consensus 319 ~r------------iT~~~~~~~~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~--~~~lt~~~~---~e~ps~~~ng 381 (425)
T COG0823 319 TR------------LTFSGGGNSNPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK--IRILTSTYL---NESPSWAPNG 381 (425)
T ss_pred eE------------eeccCCCCcCccCCCCCCEEEEEeccCCceeeEEeccCCCCc--EEEcccccc---CCCCCcCCCC
Confidence 21 11111222267899999998877643 44 55555543322 222222111 1124677788
Q ss_pred CEEEEec
Q 010390 333 SHILSGS 339 (512)
Q Consensus 333 ~~l~~g~ 339 (512)
+.+...+
T Consensus 382 ~~i~~~s 388 (425)
T COG0823 382 RMIMFSS 388 (425)
T ss_pred ceEEEec
Confidence 7775443
No 338
>KOG1008 consensus Uncharacterized conserved protein, contains WD40 repeats [Function unknown]
Probab=98.04 E-value=2.2e-06 Score=80.54 Aligned_cols=206 Identities=17% Similarity=0.244 Sum_probs=128.4
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-CCCEEEEEeC-
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-EDTNILTASG- 128 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-~~~~l~s~~~- 128 (512)
.-+.||++. +.-|..++++|..+|.|.+-.+....-. -.....+|...+++++|++ |...||.|-.
T Consensus 57 qy~kcva~~-y~~d~cIlavG~atG~I~l~s~r~~hdS-----------s~E~tp~~ar~Ct~lAwneLDtn~LAagldk 124 (783)
T KOG1008|consen 57 QYVKCVASF-YGNDRCILAVGSATGNISLLSVRHPHDS-----------SAEVTPGYARPCTSLAWNELDTNHLAAGLDK 124 (783)
T ss_pred CCceeehhh-cCCchhhhhhccccCceEEeecCCcccc-----------cceecccccccccccccccccHHHHHhhhhh
Confidence 335566551 1334468999999999999887654321 0122356788999999999 6677777643
Q ss_pred ---CCcEEEEeCCCC--eee--ecccC-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccc
Q 010390 129 ---DQTIKIWDAEKK--KCT--GALMG-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAV 200 (512)
Q Consensus 129 ---dg~i~iwd~~~~--~~~--~~~~~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~ 200 (512)
|..+.|||+.++ .+. ..+.+ -.....+++|..+. .++.+|.....+.++|++........
T Consensus 125 hrnds~~~Iwdi~s~ltvPke~~~fs~~~l~gqns~cwlrd~-klvlaGm~sr~~~ifdlRqs~~~~~s----------- 192 (783)
T KOG1008|consen 125 HRNDSSLKIWDINSLLTVPKESPLFSSSTLDGQNSVCWLRDT-KLVLAGMTSRSVHIFDLRQSLDSVSS----------- 192 (783)
T ss_pred hcccCCccceecccccCCCccccccccccccCccccccccCc-chhhcccccchhhhhhhhhhhhhhhh-----------
Confidence 677999999876 221 22222 33456688898554 88889988889999999843221110
Q ss_pred ccccccccccccceecccccccEEEEEEee-cCCEEEEEeecCCeEEEEe-ccCccceecccCCCccccccccccccCee
Q 010390 201 VKGAHLLSQSKRVSRRKAASMSITSVLYLK-DEVSIATASAVNSIVKFWD-TRNLKAQITQAWPHAESSSAKETRLHGIS 278 (512)
Q Consensus 201 ~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~-~~~~l~~~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~ 278 (512)
-....+..+...| ...+++. . .||.|.+|| .++-+........ ........+.
T Consensus 193 -----------------vnTk~vqG~tVdp~~~nY~cs-~-~dg~iAiwD~~rnienpl~~i~~------~~N~~~~~l~ 247 (783)
T KOG1008|consen 193 -----------------VNTKYVQGITVDPFSPNYFCS-N-SDGDIAIWDTYRNIENPLQIILR------NENKKPKQLF 247 (783)
T ss_pred -----------------hhhhhcccceecCCCCCceec-c-ccCceeeccchhhhccHHHHHhh------CCCCccccee
Confidence 1122566777788 4555543 3 599999999 4443333221111 1111223588
Q ss_pred EEEeCCCCC-EEEEEe-cCCeEEEEEccc
Q 010390 279 SLSQDSNGV-FLTASC-MDHRIYLYNVLQ 305 (512)
Q Consensus 279 ~~~~~~~~~-~l~~~~-~dg~i~i~d~~~ 305 (512)
.++|.|... .+++.. ..++|++||+..
T Consensus 248 ~~aycPtrtglla~l~RdS~tIrlydi~~ 276 (783)
T KOG1008|consen 248 ALAYCPTRTGLLAVLSRDSITIRLYDICV 276 (783)
T ss_pred eEEeccCCcchhhhhccCcceEEEecccc
Confidence 999998543 344444 558999999854
No 339
>PF08596 Lgl_C: Lethal giant larvae(Lgl) like, C-terminal; InterPro: IPR013905 The Lethal giant larvae (Lgl) tumour suppressor protein is conserved from yeast to mammals. The Lgl protein functions in cell polarity, at least in part, by regulating SNARE-mediated membrane delivery events at the cell surface []. The N-terminal half of Lgl members contains WD40 repeats (see IPR001680 from INTERPRO), while the C-terminal half appears specific to the protein []. ; PDB: 2OAJ_A.
Probab=98.02 E-value=0.0013 Score=61.82 Aligned_cols=241 Identities=11% Similarity=0.075 Sum_probs=119.4
Q ss_pred CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC-Cccc---------------cceeeeccccccccccccccccee
Q 010390 152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK-SNCA---------------ESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~---------------~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
.|+.+.|.++. ..|+.|...|.|.+|.....+... .... ...+..........+.........
T Consensus 3 ~v~~vs~a~~t-~Elav~~~~GeVv~~k~~~n~~~~~~~~~~~~~~~~~~~~~~~~~~~l~di~~r~~~~~~~gf~P~~l 81 (395)
T PF08596_consen 3 SVTHVSFAPET-LELAVGLESGEVVLFKFGKNQNYGNREQPPDLDYNFRRFSLNNSPGKLTDISDRAPPSLKEGFLPLTL 81 (395)
T ss_dssp -EEEEEEETTT-TEEEEEETTS-EEEEEEEE------------------S--GGGSS-SEEE-GGG--TT-SEEEEEEEE
T ss_pred eEEEEEecCCC-ceEEEEccCCcEEEEEcccCCCCCccCCCcccCcccccccccCCCcceEEehhhCCcccccccCchhh
Confidence 58899999987 789999999999999876543322 0000 000000000000000111222334
Q ss_pred cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC-----CCC---C
Q 010390 216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD-----SNG---V 287 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-----~~~---~ 287 (512)
+....++|++++.+.- . +++.|+++|.+.|.|+|....+....... ..........++++.|. .|+ -
T Consensus 82 ~~~~~g~vtal~~S~i-G-Fvaigy~~G~l~viD~RGPavI~~~~i~~---~~~~~~~~~~vt~ieF~vm~~~~D~ySSi 156 (395)
T PF08596_consen 82 LDAKQGPVTALKNSDI-G-FVAIGYESGSLVVIDLRGPAVIYNENIRE---SFLSKSSSSYVTSIEFSVMTLGGDGYSSI 156 (395)
T ss_dssp E---S-SEEEEEE-BT-S-EEEEEETTSEEEEEETTTTEEEEEEEGGG-----T-SS----EEEEEEEEEE-TTSSSEEE
T ss_pred eeccCCcEeEEecCCC-c-EEEEEecCCcEEEEECCCCeEEeeccccc---cccccccccCeeEEEEEEEecCCCcccce
Confidence 4555789999998733 3 44457799999999999887766532111 00112233446677765 333 4
Q ss_pred EEEEEecCCeEEEEEccc-CCCCceEeeeec--eeceeEEEEE-ECCC---------------------CCEEEEecCCC
Q 010390 288 FLTASCMDHRIYLYNVLQ-LDKGPIQHFSGC--RIESFYVKSE-ICPN---------------------ASHILSGSSDG 342 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~--~~~~~~~~~~-~s~~---------------------~~~l~~g~~dg 342 (512)
.|++|...|.+.+|.+.- ........+.+. .....+..+. ++.+ ..++++++ +.
T Consensus 157 ~L~vGTn~G~v~~fkIlp~~~g~f~v~~~~~~~~~~~~i~~I~~i~~~~G~~a~At~~~~~~l~~g~~i~g~vVvvS-e~ 235 (395)
T PF08596_consen 157 CLLVGTNSGNVLTFKILPSSNGRFSVQFAGATTNHDSPILSIIPINADTGESALATISAMQGLSKGISIPGYVVVVS-ES 235 (395)
T ss_dssp EEEEEETTSEEEEEEEEE-GGG-EEEEEEEEE--SS----EEEEEETTT--B-B-BHHHHHGGGGT----EEEEEE--SS
T ss_pred EEEEEeCCCCEEEEEEecCCCCceEEEEeeccccCCCceEEEEEEECCCCCcccCchhHhhccccCCCcCcEEEEEc-cc
Confidence 788999999999999852 222222122211 1112222222 2211 12444444 56
Q ss_pred CEEEEecCCCCCCCceeccccCCeEEEEeC-----CCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 343 NAYVWQVNKPQADPIKLKSHDGEVTAVNWC-----PNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 343 ~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~-----~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
.++++...+.+.....+ ...-....+.+. ..+ ..|++-..+|.|+++.+..-+.+..
T Consensus 236 ~irv~~~~~~k~~~K~~-~~~~~~~~~~vv~~~~~~~~-~~Lv~l~~~G~i~i~SLP~Lkei~~ 297 (395)
T PF08596_consen 236 DIRVFKPPKSKGAHKSF-DDPFLCSSASVVPTISRNGG-YCLVCLFNNGSIRIYSLPSLKEIKS 297 (395)
T ss_dssp EEEEE-TT---EEEEE--SS-EEEEEEEEEEEE-EEEE-EEEEEEETTSEEEEEETTT--EEEE
T ss_pred ceEEEeCCCCcccceee-ccccccceEEEEeecccCCc-eEEEEEECCCcEEEEECCCchHhhc
Confidence 69999988766533333 221223334442 234 6788889999999999988665543
No 340
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=98.00 E-value=0.0069 Score=54.78 Aligned_cols=248 Identities=12% Similarity=0.146 Sum_probs=127.9
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeec
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSS 198 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~ 198 (512)
.++.|+.|..+| +.++++........+. +...|..+...++- +.|++-+ |+.+.++++..-...........
T Consensus 6 ~~~~L~vGt~~G-l~~~~~~~~~~~~~i~-~~~~I~ql~vl~~~-~~llvLs-d~~l~~~~L~~l~~~~~~~~~~~---- 77 (275)
T PF00780_consen 6 WGDRLLVGTEDG-LYVYDLSDPSKPTRIL-KLSSITQLSVLPEL-NLLLVLS-DGQLYVYDLDSLEPVSTSAPLAF---- 77 (275)
T ss_pred CCCEEEEEECCC-EEEEEecCCccceeEe-ecceEEEEEEeccc-CEEEEEc-CCccEEEEchhhccccccccccc----
Confidence 578899999999 9999983332222222 22349999999876 5555554 49999999986554331110000
Q ss_pred ccccccccccccccceecccccccEEEEE--EeecCCEEEEEeecCCeEEEEeccCcccee-cccCCCcccccccccccc
Q 010390 199 AVVKGAHLLSQSKRVSRRKAASMSITSVL--YLKDEVSIATASAVNSIVKFWDTRNLKAQI-TQAWPHAESSSAKETRLH 275 (512)
Q Consensus 199 ~~~~~~~~~~~~~~~~~~~~~~~~v~~~~--~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 275 (512)
...............+...+ -...+...+++. ....|.+|......... ... ....-..
T Consensus 78 ---------~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~~--------ke~~lp~ 139 (275)
T PF00780_consen 78 ---------PKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKLL--------KEISLPD 139 (275)
T ss_pred ---------cccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCccccccee--------EEEEcCC
Confidence 00000000011112233333 112333333333 46688888877642111 000 1122235
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece--------eceeEEEEEECCCCCEEEEecCCCCEEEE
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR--------IESFYVKSEICPNASHILSGSSDGNAYVW 347 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~--------~~~~~~~~~~s~~~~~l~~g~~dg~i~iw 347 (512)
.+..++|. ++.++.|. .+...+.|+.+.....+....... ....+..+.. +++.+|++. |..-.+.
T Consensus 140 ~~~~i~~~--~~~i~v~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~-~~~e~Ll~~--~~~g~fv 213 (275)
T PF00780_consen 140 PPSSIAFL--GNKICVGT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQL-SDNEFLLCY--DNIGVFV 213 (275)
T ss_pred CcEEEEEe--CCEEEEEe-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEe-CCceEEEEe--cceEEEE
Confidence 68888888 45677775 445788888754443333222111 0111222222 345666654 3333344
Q ss_pred ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 348 QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 348 ~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
|..........+.- ...+.++++.. .+|+..+.+ .|.||++.+++++++..
T Consensus 214 ~~~G~~~r~~~i~W-~~~p~~~~~~~---pyli~~~~~-~iEV~~~~~~~lvQ~i~ 264 (275)
T PF00780_consen 214 NKNGEPSRKSTIQW-SSAPQSVAYSS---PYLIAFSSN-SIEVRSLETGELVQTIP 264 (275)
T ss_pred cCCCCcCcccEEEc-CCchhEEEEEC---CEEEEECCC-EEEEEECcCCcEEEEEE
Confidence 44332221123332 33566677643 366666655 49999999999888754
No 341
>PF11768 DUF3312: Protein of unknown function (DUF3312); InterPro: IPR024511 This is a eukaryotic family of uncharacterised proteins that contain WD40 repeats.
Probab=97.96 E-value=0.019 Score=54.74 Aligned_cols=75 Identities=15% Similarity=0.189 Sum_probs=59.8
Q ss_pred ccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCC
Q 010390 272 TRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNK 351 (512)
Q Consensus 272 ~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~ 351 (512)
.....+.+.+++|+...|+.|+.||.|.+||...... ... ......+.++|+|+|..+++|+..|.+.+||+.-
T Consensus 257 pL~s~v~~ca~sp~E~kLvlGC~DgSiiLyD~~~~~t----~~~--ka~~~P~~iaWHp~gai~~V~s~qGelQ~FD~AL 330 (545)
T PF11768_consen 257 PLPSQVICCARSPSEDKLVLGCEDGSIILYDTTRGVT----LLA--KAEFIPTLIAWHPDGAIFVVGSEQGELQCFDMAL 330 (545)
T ss_pred ecCCcceEEecCcccceEEEEecCCeEEEEEcCCCee----eee--eecccceEEEEcCCCcEEEEEcCCceEEEEEeec
Confidence 3446799999999999999999999999999754321 111 1123456689999999999999999999999864
Q ss_pred C
Q 010390 352 P 352 (512)
Q Consensus 352 ~ 352 (512)
.
T Consensus 331 s 331 (545)
T PF11768_consen 331 S 331 (545)
T ss_pred C
Confidence 4
No 342
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.95 E-value=0.0023 Score=57.31 Aligned_cols=255 Identities=12% Similarity=0.099 Sum_probs=134.3
Q ss_pred cCCCcEEEEe----------eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC--C
Q 010390 62 SKNSHIFAVS----------DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG--D 129 (512)
Q Consensus 62 s~~~~~latg----------~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--d 129 (512)
|||++.++++ -..-.|.+||..+..+..+..-. .. .... .......++++.|+++++.... .
T Consensus 44 spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~EI~iP--~k---~R~~-~~~~~~~~~ls~dgk~~~V~N~TPa 117 (342)
T PF06433_consen 44 SPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTGEIEIP--PK---PRAQ-VVPYKNMFALSADGKFLYVQNFTPA 117 (342)
T ss_dssp -TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEEEEEET--TS----B---BS--GGGEEE-TTSSEEEEEEESSS
T ss_pred CCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccceEecC--Cc---chhe-ecccccceEEccCCcEEEEEccCCC
Confidence 8999988873 33446999999886543221100 00 0000 0012233577889998886543 5
Q ss_pred CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccc
Q 010390 130 QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQ 209 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 209 (512)
-.|.|-|+..++.+.++... + |.-..|.++.-|.+-|.||.+.-..+............
T Consensus 118 ~SVtVVDl~~~kvv~ei~~P-G---C~~iyP~~~~~F~~lC~DGsl~~v~Ld~~Gk~~~~~t~----------------- 176 (342)
T PF06433_consen 118 TSVTVVDLAAKKVVGEIDTP-G---CWLIYPSGNRGFSMLCGDGSLLTVTLDADGKEAQKSTK----------------- 176 (342)
T ss_dssp EEEEEEETTTTEEEEEEEGT-S---EEEEEEEETTEEEEEETTSCEEEEEETSTSSEEEEEEE-----------------
T ss_pred CeEEEEECCCCceeeeecCC-C---EEEEEecCCCceEEEecCCceEEEEECCCCCEeEeecc-----------------
Confidence 67999999999988877632 2 22233545567889999999999998844332211000
Q ss_pred cccceecccccc-cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc-ccccccccCeeEEEeCCCCC
Q 010390 210 SKRVSRRKAASM-SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS-SAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 210 ~~~~~~~~~~~~-~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~-~~~~~~~~~i~~~~~~~~~~ 287 (512)
.+..... .+..-++...+..++... .+|.|+-.|+..........+...... ....-..++-.-+++++...
T Consensus 177 -----~F~~~~dp~f~~~~~~~~~~~~~F~S-y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~ 250 (342)
T PF06433_consen 177 -----VFDPDDDPLFEHPAYSRDGGRLYFVS-YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASG 250 (342)
T ss_dssp -----ESSTTTS-B-S--EEETTTTEEEEEB-TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTT
T ss_pred -----ccCCCCcccccccceECCCCeEEEEe-cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccC
Confidence 1111111 122223344444343323 688888888776654332211110000 00111223455678887666
Q ss_pred EEEEEecC--------C--eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC-EEEE-ecCCCCEEEEecCCCCC
Q 010390 288 FLTASCMD--------H--RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS-HILS-GSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 288 ~l~~~~~d--------g--~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~-~l~~-g~~dg~i~iw~~~~~~~ 354 (512)
.|++.-.. + .|.++|+.+. +.+..+... ..+.+++.+.+.+ +|++ ...++.+.+||..+++.
T Consensus 251 rlyvLMh~g~~gsHKdpgteVWv~D~~t~--krv~Ri~l~---~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~ 324 (342)
T PF06433_consen 251 RLYVLMHQGGEGSHKDPGTEVWVYDLKTH--KRVARIPLE---HPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKL 324 (342)
T ss_dssp EEEEEEEE--TT-TTS-EEEEEEEETTTT--EEEEEEEEE---EEESEEEEESSSS-EEEEEETTTTEEEEEETTT--E
T ss_pred eEEEEecCCCCCCccCCceEEEEEECCCC--eEEEEEeCC---CccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcE
Confidence 55554321 2 5777777553 333333321 2344678888765 4544 34578999999999865
No 343
>PRK02888 nitrous-oxide reductase; Validated
Probab=97.93 E-value=0.0021 Score=62.46 Aligned_cols=71 Identities=11% Similarity=0.023 Sum_probs=51.6
Q ss_pred EEEEEECCCCCEEEEe-cCCCCEEEEecCCCCCCC-----------ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEE
Q 010390 323 YVKSEICPNASHILSG-SSDGNAYVWQVNKPQADP-----------IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRL 390 (512)
Q Consensus 323 ~~~~~~s~~~~~l~~g-~~dg~i~iw~~~~~~~~~-----------~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~v 390 (512)
...++++|||++++++ ..+.+|.|+|+.+.+... ....- .......+|.++| ..+.|.--|..|..
T Consensus 323 PHGV~vSPDGkylyVanklS~tVSVIDv~k~k~~~~~~~~~~~~vvaevev-GlGPLHTaFDg~G-~aytslf~dsqv~k 400 (635)
T PRK02888 323 PHGVNTSPDGKYFIANGKLSPTVTVIDVRKLDDLFDGKIKPRDAVVAEPEL-GLGPLHTAFDGRG-NAYTTLFLDSQIVK 400 (635)
T ss_pred ccceEECCCCCEEEEeCCCCCcEEEEEChhhhhhhhccCCccceEEEeecc-CCCcceEEECCCC-CEEEeEeecceeEE
Confidence 3458999999998655 458999999998754311 11111 2234567899998 78888899999999
Q ss_pred EeCCC
Q 010390 391 WSLEN 395 (512)
Q Consensus 391 wd~~~ 395 (512)
||+..
T Consensus 401 wn~~~ 405 (635)
T PRK02888 401 WNIEA 405 (635)
T ss_pred EehHH
Confidence 99986
No 344
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.91 E-value=0.0043 Score=57.48 Aligned_cols=223 Identities=15% Similarity=0.188 Sum_probs=123.4
Q ss_pred CcEEEEeCCCCeeeecccCc-CCCEEEEEe---eCC---CCCeEEEEeC----------CCcEEEEeCCCC-CCCCCccc
Q 010390 130 QTIKIWDAEKKKCTGALMGH-TGSIKSLCS---HPT---NSDILVSGSR----------DGSFAIWDLRCK-SSPKSNCA 191 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~h-~~~v~~l~~---~~~---~~~~l~s~~~----------dg~i~vwd~~~~-~~~~~~~~ 191 (512)
..|++.|..+.+.+..+.-. ...+++++. ..+ ...+|+.|.. .|.|.++++... .....
T Consensus 2 s~i~l~d~~~~~~~~~~~l~~~E~~~s~~~~~l~~~~~~~~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~--- 78 (321)
T PF03178_consen 2 SSIRLVDPTTFEVLDSFELEPNEHVTSLCSVKLKGDSTGKKEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFK--- 78 (321)
T ss_dssp -EEEEEETTTSSEEEEEEEETTEEEEEEEEEEETTS---SSEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----E---
T ss_pred cEEEEEeCCCCeEEEEEECCCCceEEEEEEEEEcCccccccCEEEEEecccccccccccCcEEEEEEEEcccccceE---
Confidence 35788888887766555322 234555443 221 1356776653 288999998864 10000
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc-ceecccCCCccccccc
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK-AQITQAWPHAESSSAK 270 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~ 270 (512)
..........++|++++-. ++ .++++ .++.|.+|++...+ ..... .
T Consensus 79 -------------------l~~i~~~~~~g~V~ai~~~-~~-~lv~~--~g~~l~v~~l~~~~~l~~~~----------~ 125 (321)
T PF03178_consen 79 -------------------LKLIHSTEVKGPVTAICSF-NG-RLVVA--VGNKLYVYDLDNSKTLLKKA----------F 125 (321)
T ss_dssp -------------------EEEEEEEEESS-EEEEEEE-TT-EEEEE--ETTEEEEEEEETTSSEEEEE----------E
T ss_pred -------------------EEEEEEEeecCcceEhhhh-CC-EEEEe--ecCEEEEEEccCcccchhhh----------e
Confidence 0001112346688888876 33 45543 37899999999877 22211 1
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
......+.++... ++++++|.....+.++.... ....+..+........++++.+-++++.+++++.+|.+.++...
T Consensus 126 ~~~~~~i~sl~~~--~~~I~vgD~~~sv~~~~~~~-~~~~l~~va~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~ 202 (321)
T PF03178_consen 126 YDSPFYITSLSVF--KNYILVGDAMKSVSLLRYDE-ENNKLILVARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYN 202 (321)
T ss_dssp E-BSSSEEEEEEE--TTEEEEEESSSSEEEEEEET-TTE-EEEEEEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-
T ss_pred ecceEEEEEEecc--ccEEEEEEcccCEEEEEEEc-cCCEEEEEEecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEEC
Confidence 1111235555544 56999999888888886644 22223333333334567778887666799999999999999886
Q ss_pred CCC--------CCCceeccc-cCCeEEE---EeCC--CCCC-----eEEEEeCCCcEEEE
Q 010390 351 KPQ--------ADPIKLKSH-DGEVTAV---NWCP--NEAG-----KIVTSSDDYTVRLW 391 (512)
Q Consensus 351 ~~~--------~~~~~~~~h-~~~v~~v---~~~~--~~~~-----~l~s~~~dg~i~vw 391 (512)
... .......-| ...|+++ .+.| .+.. .++-++.+|.|.+.
T Consensus 203 ~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 203 PEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRSGSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--SSSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccccccceeEEEEECCCccceEEEEEeeecCCCCcccccceEEEEecCCEEEEE
Confidence 311 111111222 4567777 5555 2212 37888888888843
No 345
>PF04053 Coatomer_WDAD: Coatomer WD associated region ; InterPro: IPR006692 Proteins synthesised on the ribosome and processed in the endoplasmic reticulum are transported from the Golgi apparatus to the trans-Golgi network (TGN), and from there via small carrier vesicles to their final destination compartment. This traffic is bidirectional, to ensure that proteins required to form vesicles are recycled. Vesicles have specific coat proteins (such as clathrin or coatomer) that are important for cargo selection and direction of transfer []. While clathrin mediates endocytic protein transport, and transport from ER to Golgi, coatomers primarily mediate intra-Golgi transport, as well as the reverse Golgi to ER transport of dilysine-tagged proteins []. For example, the coatomer COP1 (coat protein complex 1) is responsible for reverse transport of recycled proteins from Golgi and pre-Golgi compartments back to the ER, while COPII buds vesicles from the ER to the Golgi []. Coatomers reversibly associate with Golgi (non-clathrin-coated) vesicles to mediate protein transport and for budding from Golgi membranes []. Activated small guanine triphosphatases (GTPases) attract coat proteins to specific membrane export sites, thereby linking coatomers to export cargos. As coat proteins polymerise, vesicles are formed and budded from membrane-bound organelles. Coatomer complexes also influence Golgi structural integrity, as well as the processing, activity, and endocytic recycling of LDL receptors. In mammals, coatomer complexes can only be recruited by membranes associated to ADP-ribosylation factors (ARFs), which are small GTP-binding proteins. Coatomer complexes are hetero-oligomers composed of at least an alpha, beta, beta', gamma, delta, epsilon and zeta subunits. This entry represents the WD-associated region found in coatomer subunits alpha, beta and beta' subunits. The alpha-subunit (RET1P) of the coatomer complex in Saccharomyces cerevisiae (Baker's yeast), participates in membrane transport between the endoplasmic reticulum and Golgi apparatus. The protein contains six WD-40 repeat motifs in its N-terminal region []. More information about these proteins can be found at Protein of the Month: Clathrin [].; GO: 0005198 structural molecule activity, 0006886 intracellular protein transport, 0016192 vesicle-mediated transport, 0030117 membrane coat; PDB: 3MKQ_B.
Probab=97.90 E-value=0.007 Score=57.81 Aligned_cols=229 Identities=14% Similarity=0.133 Sum_probs=113.3
Q ss_pred ccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE-eCC
Q 010390 103 DWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW-DLR 181 (512)
Q Consensus 103 ~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw-d~~ 181 (512)
.+....-....+.++|+|++++.+ .||...|+.....+... .+.-...+|.+. +.+|+-...+.|.++ ++.
T Consensus 27 ~lg~~~~~p~~ls~npngr~v~V~-g~geY~iyt~~~~r~k~-----~G~g~~~vw~~~--n~yAv~~~~~~I~I~kn~~ 98 (443)
T PF04053_consen 27 ELGSCEIYPQSLSHNPNGRFVLVC-GDGEYEIYTALAWRNKA-----FGSGLSFVWSSR--NRYAVLESSSTIKIYKNFK 98 (443)
T ss_dssp EEEE-SS--SEEEE-TTSSEEEEE-ETTEEEEEETTTTEEEE-----EEE-SEEEE-TS--SEEEEE-TTS-EEEEETTE
T ss_pred cCCCCCcCCeeEEECCCCCEEEEE-cCCEEEEEEccCCcccc-----cCceeEEEEecC--ccEEEEECCCeEEEEEcCc
Confidence 333445568899999999999985 57888888844433322 123445778884 567777778899996 343
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
... ..... ....+..+-. |..++..+ ++.|.+||..+++.+....
T Consensus 99 ~~~-~k~i~----------------------------~~~~~~~If~---G~LL~~~~--~~~i~~yDw~~~~~i~~i~- 143 (443)
T PF04053_consen 99 NEV-VKSIK----------------------------LPFSVEKIFG---GNLLGVKS--SDFICFYDWETGKLIRRID- 143 (443)
T ss_dssp E-T-T---------------------------------SS-EEEEE----SSSEEEEE--TTEEEEE-TTT--EEEEES-
T ss_pred ccc-ceEEc----------------------------CCcccceEEc---CcEEEEEC--CCCEEEEEhhHcceeeEEe-
Confidence 222 11110 0112333333 77777654 5689999999988765432
Q ss_pred CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC------C---CCceEeeeeceeceeEEEEEECCCC
Q 010390 262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL------D---KGPIQHFSGCRIESFYVKSEICPNA 332 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~------~---~~~~~~~~~~~~~~~~~~~~~s~~~ 332 (512)
..+|..+.|++++.+++..+.+ .+.+++.... + ...+.... .....+.+.+|..+
T Consensus 144 ------------v~~vk~V~Ws~~g~~val~t~~-~i~il~~~~~~~~~~~~~g~e~~f~~~~--E~~~~IkSg~W~~d- 207 (443)
T PF04053_consen 144 ------------VSAVKYVIWSDDGELVALVTKD-SIYILKYNLEAVAAIPEEGVEDAFELIH--EISERIKSGCWVED- 207 (443)
T ss_dssp ------------S-E-EEEEE-TTSSEEEEE-S--SEEEEEE-HHHHHHBTTTB-GGGEEEEE--EE-S--SEEEEETT-
T ss_pred ------------cCCCcEEEEECCCCEEEEEeCC-eEEEEEecchhcccccccCchhceEEEE--EecceeEEEEEEcC-
Confidence 1238899999999999988755 6677664321 0 00111111 11223444566554
Q ss_pred CEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 333 SHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 333 ~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
-++.+.. . .++. +-.+.. ..+..-+.++.=+.+.+.. +.+.....|+.|..+.+....
T Consensus 208 ~fiYtT~-~-~lkY--l~~Ge~--~~i~~ld~~~yllgy~~~~-~~ly~~Dr~~~v~~~~ld~~~ 265 (443)
T PF04053_consen 208 CFIYTTS-N-HLKY--LVNGET--GIIAHLDKPLYLLGYLPKE-NRLYLIDRDGNVISYELDLSE 265 (443)
T ss_dssp EEEEE-T-T-EEEE--EETTEE--EEEEE-SS--EEEEEETTT-TEEEEE-TT--EEEEE--HHH
T ss_pred EEEEEcC-C-eEEE--EEcCCc--ceEEEcCCceEEEEEEccC-CEEEEEECCCCEEEEEECHHH
Confidence 2333322 2 4444 222322 1222224556666677765 678888888888888776543
No 346
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.0033 Score=54.73 Aligned_cols=217 Identities=10% Similarity=0.061 Sum_probs=108.7
Q ss_pred cccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEE
Q 010390 145 ALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSIT 224 (512)
Q Consensus 145 ~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~ 224 (512)
.+.+-...+..|+|.|+.+.++++....+.|...+.. ++.+... .+ ...+...
T Consensus 16 ~l~g~~~e~SGLTy~pd~~tLfaV~d~~~~i~els~~-G~vlr~i-------------------------~l-~g~~D~E 68 (248)
T PF06977_consen 16 PLPGILDELSGLTYNPDTGTLFAVQDEPGEIYELSLD-GKVLRRI-------------------------PL-DGFGDYE 68 (248)
T ss_dssp E-TT--S-EEEEEEETTTTEEEEEETTTTEEEEEETT---EEEEE-------------------------E--SS-SSEE
T ss_pred ECCCccCCccccEEcCCCCeEEEEECCCCEEEEEcCC-CCEEEEE-------------------------eC-CCCCCce
Confidence 4455556799999999875777777788888777764 3322111 11 1235688
Q ss_pred EEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcc
Q 010390 225 SVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVL 304 (512)
Q Consensus 225 ~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~ 304 (512)
.|++..++.++++ ...++.+.++++.........................++..++|++.++.|+++....-..+|.+.
T Consensus 69 gI~y~g~~~~vl~-~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~~~L~v~kE~~P~~l~~~~ 147 (248)
T PF06977_consen 69 GITYLGNGRYVLS-EERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKTNRLFVAKERKPKRLYEVN 147 (248)
T ss_dssp EEEE-STTEEEEE-ETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTTTEEEEEEESSSEEEEEEE
T ss_pred eEEEECCCEEEEE-EcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCCCEEEEEeCCCChhhEEEc
Confidence 8999877766665 445889999988543211110000000000112345678999999998888888777666777765
Q ss_pred cCC--CC-ceEeeeec----eeceeEEEEEECCC-CCEEEEecCCCCEEEEecCCCCCCCceecc--c-----cCCeEEE
Q 010390 305 QLD--KG-PIQHFSGC----RIESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKPQADPIKLKS--H-----DGEVTAV 369 (512)
Q Consensus 305 ~~~--~~-~~~~~~~~----~~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--h-----~~~v~~v 369 (512)
... .. ........ .....+..++++|. +.+++....+..|.++|....-.....+.. | -...-.|
T Consensus 148 ~~~~~~~~~~~~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d~~G~~~~~~~L~~g~~gl~~~~~QpEGI 227 (248)
T PF06977_consen 148 GFPGGFDLFVSDDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELDRQGRVVSSLSLDRGFHGLSKDIPQPEGI 227 (248)
T ss_dssp STT-SS--EEEE-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE-TT--EEEEEE-STTGGG-SS---SEEEE
T ss_pred cccCccceeeccccccccccceeccccceEEcCCCCeEEEEECCCCeEEEECCCCCEEEEEEeCCcccCcccccCCccEE
Confidence 311 11 11111111 11123556888886 556677777788888884432111112221 1 1257789
Q ss_pred EeCCCCCCeEEEEeCCCcEEEE
Q 010390 370 NWCPNEAGKIVTSSDDYTVRLW 391 (512)
Q Consensus 370 ~~~~~~~~~l~s~~~dg~i~vw 391 (512)
+|.++| .+.+ .+.-+..+++
T Consensus 228 a~d~~G-~LYI-vsEpNlfy~f 247 (248)
T PF06977_consen 228 AFDPDG-NLYI-VSEPNLFYRF 247 (248)
T ss_dssp EE-TT---EEE-EETTTEEEEE
T ss_pred EECCCC-CEEE-EcCCceEEEe
Confidence 999988 4444 4455555544
No 347
>PF06977 SdiA-regulated: SdiA-regulated; InterPro: IPR009722 This entry represents a conserved region approximately 100 residues long within a number of hypothetical bacterial proteins that may be regulated by SdiA, a member of the LuxR family of transcriptional regulators []. Some proteins contain the IPR001258 from INTERPRO repeat.; PDB: 3QQZ_A.
Probab=97.88 E-value=0.011 Score=51.46 Aligned_cols=222 Identities=12% Similarity=0.143 Sum_probs=112.0
Q ss_pred EeecCCccCCcceEEEEEecCCC-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC
Q 010390 43 TVEHHGEETPPLAVSFCKTSKNS-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT 121 (512)
Q Consensus 43 ~~~~~gh~~~v~~v~~~~~s~~~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~ 121 (512)
...+.|-..-+.+|+| .|+. .++|+....+.|...+.+.. . .....+.+ .+..-.|++..++.
T Consensus 14 ~~~l~g~~~e~SGLTy---~pd~~tLfaV~d~~~~i~els~~G~-v-----------lr~i~l~g-~~D~EgI~y~g~~~ 77 (248)
T PF06977_consen 14 AKPLPGILDELSGLTY---NPDTGTLFAVQDEPGEIYELSLDGK-V-----------LRRIPLDG-FGDYEGITYLGNGR 77 (248)
T ss_dssp EEE-TT--S-EEEEEE---ETTTTEEEEEETTTTEEEEEETT---E-----------EEEEE-SS--SSEEEEEE-STTE
T ss_pred eeECCCccCCccccEE---cCCCCeEEEEECCCCEEEEEcCCCC-E-----------EEEEeCCC-CCCceeEEEECCCE
Confidence 3455565666889999 8864 57777888888888886532 1 11122333 35688888887787
Q ss_pred EEEEEeCCCcEEEEeCCCCe------eeecc-----cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCcc
Q 010390 122 NILTASGDQTIKIWDAEKKK------CTGAL-----MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNC 190 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~~------~~~~~-----~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 190 (512)
++++.-.++.+.+.++.... ....+ ..++..+-.++|.+.+ +.|+.+-...-..+|.+.........
T Consensus 78 ~vl~~Er~~~L~~~~~~~~~~~~~~~~~~~~~l~~~~~~N~G~EGla~D~~~-~~L~v~kE~~P~~l~~~~~~~~~~~~- 155 (248)
T PF06977_consen 78 YVLSEERDQRLYIFTIDDDTTSLDRADVQKISLGFPNKGNKGFEGLAYDPKT-NRLFVAKERKPKRLYEVNGFPGGFDL- 155 (248)
T ss_dssp EEEEETTTTEEEEEEE----TT--EEEEEEEE---S---SS--EEEEEETTT-TEEEEEEESSSEEEEEEESTT-SS---
T ss_pred EEEEEcCCCcEEEEEEeccccccchhhceEEecccccCCCcceEEEEEcCCC-CEEEEEeCCCChhhEEEccccCccce-
Confidence 77766568999999884321 11111 1345678999999987 55555666666677766541100000
Q ss_pred ccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccc
Q 010390 191 AESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAK 270 (512)
Q Consensus 191 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~ 270 (512)
... ...........-..+.+++++|....+++.+..+..|..+| .+++........... ..+
T Consensus 156 ---~~~------------~~~~~~~~~~~~~d~S~l~~~p~t~~lliLS~es~~l~~~d-~~G~~~~~~~L~~g~--~gl 217 (248)
T PF06977_consen 156 ---FVS------------DDQDLDDDKLFVRDLSGLSYDPRTGHLLILSDESRLLLELD-RQGRVVSSLSLDRGF--HGL 217 (248)
T ss_dssp ---EEE------------E-HHHH-HT--SS---EEEEETTTTEEEEEETTTTEEEEE--TT--EEEEEE-STTG--GG-
T ss_pred ---eec------------cccccccccceeccccceEEcCCCCeEEEEECCCCeEEEEC-CCCCEEEEEEeCCcc--cCc
Confidence 000 00000001122345789999998877777777889999999 444433322111100 011
Q ss_pred cccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 271 ETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 271 ~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
...-.....|+++++|++.+++ .-+..++|
T Consensus 218 ~~~~~QpEGIa~d~~G~LYIvs-EpNlfy~f 247 (248)
T PF06977_consen 218 SKDIPQPEGIAFDPDGNLYIVS-EPNLFYRF 247 (248)
T ss_dssp SS---SEEEEEE-TT--EEEEE-TTTEEEEE
T ss_pred ccccCCccEEEECCCCCEEEEc-CCceEEEe
Confidence 1122347789999999655554 45544443
No 348
>KOG3621 consensus WD40 repeat-containing protein [General function prediction only]
Probab=97.87 E-value=0.00039 Score=66.75 Aligned_cols=162 Identities=14% Similarity=0.137 Sum_probs=109.2
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
.+.--++...+++++. |+.-|.+++|+-..+..... ...+....+....++++..+++.|+..|.|.++
T Consensus 35 ~v~lTc~dst~~~l~~-GsS~G~lyl~~R~~~~~~~~----------~~~~~~~~~~~~~vs~~e~lvAagt~~g~V~v~ 103 (726)
T KOG3621|consen 35 RVKLTCVDATEEYLAM-GSSAGSVYLYNRHTGEMRKL----------KNEGATGITCVRSVSSVEYLVAAGTASGRVSVF 103 (726)
T ss_pred eEEEEEeecCCceEEE-ecccceEEEEecCchhhhcc----------cccCccceEEEEEecchhHhhhhhcCCceEEee
Confidence 3444455667777777 66799999999877665432 122234456677888999999999999999999
Q ss_pred EcccCCCCceEeeeece--eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCC---CCCceeccccCCeEEEEeCCCCC
Q 010390 302 NVLQLDKGPIQHFSGCR--IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQ---ADPIKLKSHDGEVTAVNWCPNEA 376 (512)
Q Consensus 302 d~~~~~~~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~---~~~~~~~~h~~~v~~v~~~~~~~ 376 (512)
-+..........+.... +...|++++|++++..+++|...|.|..-.++... .....+..-.+.|..+.....
T Consensus 104 ql~~~~p~~~~~~t~~d~~~~~rVTal~Ws~~~~k~ysGD~~Gkv~~~~L~s~~~~~~~~q~il~~ds~IVQlD~~q~-- 181 (726)
T KOG3621|consen 104 QLNKELPRDLDYVTPCDKSHKCRVTALEWSKNGMKLYSGDSQGKVVLTELDSRQAFLSKSQEILSEDSEIVQLDYLQS-- 181 (726)
T ss_pred hhhccCCCcceeeccccccCCceEEEEEecccccEEeecCCCceEEEEEechhhhhccccceeeccCcceEEeecccc--
Confidence 98774333333332222 35679999999999999999999999999887721 112233344678888887653
Q ss_pred CeEEEEeCCCcEEEEeCCCCcc
Q 010390 377 GKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 377 ~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
.+|++... .-.+++++.++.
T Consensus 182 ~LLVStl~--r~~Lc~tE~eti 201 (726)
T KOG3621|consen 182 YLLVSTLT--RCILCQTEAETI 201 (726)
T ss_pred eehHhhhh--hhheeecchhHH
Confidence 35555443 334566655543
No 349
>PF00930 DPPIV_N: Dipeptidyl peptidase IV (DPP IV) N-terminal region; InterPro: IPR002469 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This domain defines serine peptidases belonging to MEROPS peptidase family S9 (clan SC), subfamily S9B (dipeptidyl-peptidase IV). The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. This domain is an alignment of the region to the N-terminal side of the active site, which is found in IPR001375 from INTERPRO. CD26 (3.4.14.5 from EC) is also called adenosine deaminase-binding protein (ADA-binding protein) or dipeptidylpeptidase IV (DPP IV ectoenzyme). The exopeptidase cleaves off N-terminal X-Pro or X-Ala dipeptides from polypeptides (dipeptidyl peptidase IV activity). CD26 serves as the costimulatory molecule in T cell activation and is an associated marker of autoimmune diseases, adenosine deaminase-deficiency and HIV pathogenesis. Dipeptidyl peptidase IV (DPP IV) is responsible for the removal of N-terminal dipeptides sequentially from polypeptides having unsubstituted N termini, provided that the penultimate residue is proline. The enzyme catalyses the reaction: Dipeptidyl-Polypeptide + H(2)O = Dipeptide + Polypeptide It is a type II membrane protein that forms a homodimer. CD molecules are leucocyte antigens on cell surfaces. CD antigens nomenclature is updated at Protein Reviews On The Web (http://prow.nci.nih.gov/). ; GO: 0006508 proteolysis, 0016020 membrane; PDB: 2RIP_A 3Q8W_B 2AJL_I 1TKR_B 1TK3_B 3C45_A 2G5P_A 3G0C_D 1R9M_C 1RWQ_A ....
Probab=97.83 E-value=0.0015 Score=61.33 Aligned_cols=250 Identities=11% Similarity=0.095 Sum_probs=124.8
Q ss_pred ecCCCEEEEEe---------CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390 117 IKEDTNILTAS---------GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK 187 (512)
Q Consensus 117 s~~~~~l~s~~---------~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 187 (512)
|||+++++... ..+.+.|+|+++++....... ...+....|+|++ +.++-.. ++.|.+++..++....
T Consensus 1 S~d~~~~l~~~~~~~~~r~s~~~~y~i~d~~~~~~~~l~~~-~~~~~~~~~sP~g-~~~~~v~-~~nly~~~~~~~~~~~ 77 (353)
T PF00930_consen 1 SPDGKFVLFATNYTKQWRHSFKGDYYIYDIETGEITPLTPP-PPKLQDAKWSPDG-KYIAFVR-DNNLYLRDLATGQETQ 77 (353)
T ss_dssp -TTSSEEEEEEEEEEESSSEEEEEEEEEETTTTEEEESS-E-ETTBSEEEE-SSS-TEEEEEE-TTEEEEESSTTSEEEE
T ss_pred CCCCCeEEEEECcEEeeeeccceeEEEEecCCCceEECcCC-ccccccceeecCC-CeeEEEe-cCceEEEECCCCCeEE
Confidence 57777777632 246789999999876554443 5678889999998 6666665 5789999887653221
Q ss_pred CccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccc
Q 010390 188 SNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESS 267 (512)
Q Consensus 188 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~ 267 (512)
..... ...+..+.... +-. ..--..-..+-|+||++.|+..-.++..|..+.+........
T Consensus 78 lT~dg----~~~i~nG~~dw-----vye-EEv~~~~~~~~WSpd~~~la~~~~d~~~v~~~~~~~~~~~~~--------- 138 (353)
T PF00930_consen 78 LTTDG----EPGIYNGVPDW-----VYE-EEVFDRRSAVWWSPDSKYLAFLRFDEREVPEYPLPDYSPPDS--------- 138 (353)
T ss_dssp SES------TTTEEESB--H-----HHH-HHTSSSSBSEEE-TTSSEEEEEEEE-TTS-EEEEEEESSSTE---------
T ss_pred ecccc----ceeEEcCccce-----ecc-ccccccccceEECCCCCEEEEEEECCcCCceEEeeccCCccc---------
Confidence 11100 00000000000 000 000112356889999999998887777777765543211100
Q ss_pred ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee-eceeceeEEEEEECCCCCEEEEe--cCC---
Q 010390 268 SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS-GCRIESFYVKSEICPNASHILSG--SSD--- 341 (512)
Q Consensus 268 ~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g--~~d--- 341 (512)
....+..+.+-.-|.--. .-.+.++|+.+.+...+.... .......+..+.|.++++.|+.. ..+
T Consensus 139 -----~yp~~~~~~YPk~G~~np----~v~l~v~~~~~~~~~~~~~~~~~~~~~~yl~~v~W~~d~~~l~~~~~nR~q~~ 209 (353)
T PF00930_consen 139 -----QYPEVESIRYPKAGDPNP----RVSLFVVDLASGKTTELDPPNSLNPQDYYLTRVGWSPDGKRLWVQWLNRDQNR 209 (353)
T ss_dssp -----SS-EEEEEE--BTTS-------EEEEEEEESSSTCCCEE---HHHHTSSEEEEEEEEEETTEEEEEEEEETTSTE
T ss_pred -----cCCcccccccCCCCCcCC----ceEEEEEECCCCcEEEeeeccccCCCccCcccceecCCCcEEEEEEcccCCCE
Confidence 000122333321121111 114667887654433222110 12335678889999999844332 222
Q ss_pred CCEEEEecCCCCCCCceeccccCCe---EEEEeC-CCCCCeEEEEeCCCcE--EEEeCCCCc
Q 010390 342 GNAYVWQVNKPQADPIKLKSHDGEV---TAVNWC-PNEAGKIVTSSDDYTV--RLWSLENSR 397 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~~~h~~~v---~~v~~~-~~~~~~l~s~~~dg~i--~vwd~~~~~ 397 (512)
..+.++|..++...........+.| ....|. +++..+|.....||-- .+.+...+.
T Consensus 210 ~~l~~~d~~tg~~~~~~~e~~~~Wv~~~~~~~~~~~~~~~~l~~s~~~G~~hly~~~~~~~~ 271 (353)
T PF00930_consen 210 LDLVLCDASTGETRVVLEETSDGWVDVYDPPHFLGPDGNEFLWISERDGYRHLYLYDLDGGK 271 (353)
T ss_dssp EEEEEEEECTTTCEEEEEEESSSSSSSSSEEEE-TTTSSEEEEEEETTSSEEEEEEETTSSE
T ss_pred EEEEEEECCCCceeEEEEecCCcceeeecccccccCCCCEEEEEEEcCCCcEEEEEcccccc
Confidence 2366777766554322222222332 244554 6664666666677744 445555555
No 350
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.83 E-value=0.028 Score=54.33 Aligned_cols=252 Identities=12% Similarity=0.042 Sum_probs=127.8
Q ss_pred cEEEEEEecCCCEEEEE-eCCC----cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC----------Cc
Q 010390 110 AIFDLCWIKEDTNILTA-SGDQ----TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD----------GS 174 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~-~~dg----~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d----------g~ 174 (512)
.+....++|++++||.+ +..| .|++.|+.+++.+...-... .-..+.|.+++..++.+...+ ..
T Consensus 125 ~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~d~i~~~-~~~~~~W~~d~~~~~y~~~~~~~~~~~~~~~~~ 203 (414)
T PF02897_consen 125 SLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLPDGIENP-KFSSVSWSDDGKGFFYTRFDEDQRTSDSGYPRQ 203 (414)
T ss_dssp EEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEEEEEEEE-ESEEEEECTTSSEEEEEECSTTTSS-CCGCCEE
T ss_pred EeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcCCccccc-ccceEEEeCCCCEEEEEEeCcccccccCCCCcE
Confidence 34467889999999844 3333 59999999997765321111 122389999884445554333 13
Q ss_pred EEEEeCCCCCCCCCccccceeeecccccccccccccccceecccc-ccc-EEEEEEeecCCEEEEEeecC---CeEEEEe
Q 010390 175 FAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAA-SMS-ITSVLYLKDEVSIATASAVN---SIVKFWD 249 (512)
Q Consensus 175 i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~-v~~~~~~~~~~~l~~~g~~d---g~i~iwd 249 (512)
|..|++.+..... ...+... ... ...+..+++++++++..... ..+.+.|
T Consensus 204 v~~~~~gt~~~~d-------------------------~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d 258 (414)
T PF02897_consen 204 VYRHKLGTPQSED-------------------------ELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLD 258 (414)
T ss_dssp EEEEETTS-GGG--------------------------EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEE
T ss_pred EEEEECCCChHhC-------------------------eeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEe
Confidence 6677765443210 0011111 112 56788899999987644333 3577778
Q ss_pred ccCc---cceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe---cCCeEEEEEcccCCCCceE-eeeeceecee
Q 010390 250 TRNL---KAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC---MDHRIYLYNVLQLDKGPIQ-HFSGCRIESF 322 (512)
Q Consensus 250 ~~~~---~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~i~i~d~~~~~~~~~~-~~~~~~~~~~ 322 (512)
+... ..... ........+....-+.++.+++... ..+.|...++......... .+..+.....
T Consensus 259 ~~~~~~~~~~~~----------~l~~~~~~~~~~v~~~~~~~yi~Tn~~a~~~~l~~~~l~~~~~~~~~~~l~~~~~~~~ 328 (414)
T PF02897_consen 259 LDDGGSPDAKPK----------LLSPREDGVEYYVDHHGDRLYILTNDDAPNGRLVAVDLADPSPAEWWTVLIPEDEDVS 328 (414)
T ss_dssp CCCTTTSS-SEE----------EEEESSSS-EEEEEEETTEEEEEE-TT-TT-EEEEEETTSTSGGGEEEEEE--SSSEE
T ss_pred ccccCCCcCCcE----------EEeCCCCceEEEEEccCCEEEEeeCCCCCCcEEEEecccccccccceeEEcCCCCcee
Confidence 7764 11111 1122222233222222444444333 2367777777664432222 3333222223
Q ss_pred EEEEEECCCCCEEE-EecCCC--CEEEEecC-CCCCCCceeccccCCeEEEEeCCCCCCeEEEEeC---CCcEEEEeCCC
Q 010390 323 YVKSEICPNASHIL-SGSSDG--NAYVWQVN-KPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSD---DYTVRLWSLEN 395 (512)
Q Consensus 323 ~~~~~~s~~~~~l~-~g~~dg--~i~iw~~~-~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~---dg~i~vwd~~~ 395 (512)
+..+. ..+++|+ ....++ .|+++++. .... ......-.+.|..+...++++.+.++.+. -+++..||+.+
T Consensus 329 l~~~~--~~~~~Lvl~~~~~~~~~l~v~~~~~~~~~-~~~~~p~~g~v~~~~~~~~~~~~~~~~ss~~~P~~~y~~d~~t 405 (414)
T PF02897_consen 329 LEDVS--LFKDYLVLSYRENGSSRLRVYDLDDGKES-REIPLPEAGSVSGVSGDFDSDELRFSYSSFTTPPTVYRYDLAT 405 (414)
T ss_dssp EEEEE--EETTEEEEEEEETTEEEEEEEETT-TEEE-EEEESSSSSEEEEEES-TT-SEEEEEEEETTEEEEEEEEETTT
T ss_pred EEEEE--EECCEEEEEEEECCccEEEEEECCCCcEE-eeecCCcceEEeccCCCCCCCEEEEEEeCCCCCCEEEEEECCC
Confidence 33333 3344454 443443 48888888 3322 12222224456777766666455555442 36899999999
Q ss_pred Ccccc
Q 010390 396 SRCSS 400 (512)
Q Consensus 396 ~~~~~ 400 (512)
++...
T Consensus 406 ~~~~~ 410 (414)
T PF02897_consen 406 GELTL 410 (414)
T ss_dssp TCEEE
T ss_pred CCEEE
Confidence 87543
No 351
>cd00216 PQQ_DH Dehydrogenases with pyrrolo-quinoline quinone (PQQ) as cofactor, like ethanol, methanol, and membrane bound glucose dehydrogenases. The alignment model contains an 8-bladed beta-propeller.
Probab=97.75 E-value=0.0095 Score=58.60 Aligned_cols=26 Identities=12% Similarity=0.210 Sum_probs=22.0
Q ss_pred CCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 331 NASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
.+..|++++.||.|+.+|..+++...
T Consensus 405 ~g~~v~~g~~dG~l~ald~~tG~~lW 430 (488)
T cd00216 405 AGNLVFAGAADGYFRAFDATTGKELW 430 (488)
T ss_pred cCCeEEEECCCCeEEEEECCCCceee
Confidence 45788889999999999999988743
No 352
>PF06433 Me-amine-dh_H: Methylamine dehydrogenase heavy chain (MADH); InterPro: IPR009451 Methylamine dehydrogenase (1.4.99.3 from EC) is a periplasmic quinoprotein found in several methyltrophic bacteria []. It is induced when grown on methylamine as a carbon source MADH and catalyses the oxidative deamination of amines to their corresponding aldehydes. The redox cofactor of this enzyme is tryptophan tryptophylquinone (TTQ). Electrons derived from the oxidation of methylamine are passed to an electron acceptor, which is usually the blue-copper protein amicyanin (IPR002386 from INTERPRO). RCH2NH2 + H2O + acceptor = RCHO + NH3 + reduced acceptor MADH is a hetero-tetramer, comprised of two heavy subunits and two light subunits. The heavy subunit forms a seven-bladed beta-propeller like structure [].; GO: 0030058 amine dehydrogenase activity, 0030416 methylamine metabolic process, 0055114 oxidation-reduction process, 0042597 periplasmic space; PDB: 3RN1_F 3SVW_F 3PXT_F 3L4O_F 3L4M_D 3SJL_F 3PXS_D 3ORV_F 3RMZ_F 3RLM_F ....
Probab=97.74 E-value=0.0077 Score=54.09 Aligned_cols=273 Identities=8% Similarity=0.045 Sum_probs=132.9
Q ss_pred CcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC----------CCcEEEEeCCCCeeee
Q 010390 75 GYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG----------DQTIKIWDAEKKKCTG 144 (512)
Q Consensus 75 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~----------dg~i~iwd~~~~~~~~ 144 (512)
+.+.|+|.++++. +-.+.. +-.-.+..+|+++.+++++. .-.|.+||..+-....
T Consensus 17 ~rv~viD~d~~k~-------------lGmi~~--g~~~~~~~spdgk~~y~a~T~~sR~~rG~RtDvv~~~D~~TL~~~~ 81 (342)
T PF06433_consen 17 SRVYVIDADSGKL-------------LGMIDT--GFLGNVALSPDGKTIYVAETFYSRGTRGERTDVVEIWDTQTLSPTG 81 (342)
T ss_dssp EEEEEEETTTTEE-------------EEEEEE--ESSEEEEE-TTSSEEEEEEEEEEETTEEEEEEEEEEEETTTTEEEE
T ss_pred ceEEEEECCCCcE-------------EEEeec--ccCCceeECCCCCEEEEEEEEEeccccccceeEEEEEecCcCcccc
Confidence 4788888776532 222221 12223567899999887543 3469999999987766
Q ss_pred cccCcCC-CE------EEEEeeCCCCCeEEEEeC--CCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390 145 ALMGHTG-SI------KSLCSHPTNSDILVSGSR--DGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 145 ~~~~h~~-~v------~~l~~~~~~~~~l~s~~~--dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
.+.-... .. +.+.++.++ ++++..-. -..|.|.|+...+.......
T Consensus 82 EI~iP~k~R~~~~~~~~~~~ls~dg-k~~~V~N~TPa~SVtVVDl~~~kvv~ei~~------------------------ 136 (342)
T PF06433_consen 82 EIEIPPKPRAQVVPYKNMFALSADG-KFLYVQNFTPATSVTVVDLAAKKVVGEIDT------------------------ 136 (342)
T ss_dssp EEEETTS-B--BS--GGGEEE-TTS-SEEEEEEESSSEEEEEEETTTTEEEEEEEG------------------------
T ss_pred eEecCCcchheecccccceEEccCC-cEEEEEccCCCCeEEEEECCCCceeeeecC------------------------
Confidence 5432211 11 122344444 33322211 12444555543332211111
Q ss_pred cccccccEEEEEEeecC-CEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccC-eeEEEeCCCCCEEEEEe
Q 010390 216 RKAASMSITSVLYLKDE-VSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHG-ISSLSQDSNGVFLTASC 293 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~-~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~-i~~~~~~~~~~~l~~~~ 293 (512)
.-|....|.+ ..+.+.| .||.+.-..+............ .+.....+ +..-++...+..++--+
T Consensus 137 -------PGC~~iyP~~~~~F~~lC-~DGsl~~v~Ld~~Gk~~~~~t~------~F~~~~dp~f~~~~~~~~~~~~~F~S 202 (342)
T PF06433_consen 137 -------PGCWLIYPSGNRGFSMLC-GDGSLLTVTLDADGKEAQKSTK------VFDPDDDPLFEHPAYSRDGGRLYFVS 202 (342)
T ss_dssp -------TSEEEEEEEETTEEEEEE-TTSCEEEEEETSTSSEEEEEEE------ESSTTTS-B-S--EEETTTTEEEEEB
T ss_pred -------CCEEEEEecCCCceEEEe-cCCceEEEEECCCCCEeEeecc------ccCCCCcccccccceECCCCeEEEEe
Confidence 1122222322 2333333 5888888888743222211000 11111112 22333444555555577
Q ss_pred cCCeEEEEEcccCCCCceEeeeec----eec----eeEEEEEECCCCCEEEEec---C-----CC--CEEEEecCCCCCC
Q 010390 294 MDHRIYLYNVLQLDKGPIQHFSGC----RIE----SFYVKSEICPNASHILSGS---S-----DG--NAYVWQVNKPQAD 355 (512)
Q Consensus 294 ~dg~i~i~d~~~~~~~~~~~~~~~----~~~----~~~~~~~~s~~~~~l~~g~---~-----dg--~i~iw~~~~~~~~ 355 (512)
.+|.|+-.|+............-. ... +-..-+++++..+.|++-- . |+ .|-++|+.+.+..
T Consensus 203 y~G~v~~~dlsg~~~~~~~~~~~~t~~e~~~~WrPGG~Q~~A~~~~~~rlyvLMh~g~~gsHKdpgteVWv~D~~t~krv 282 (342)
T PF06433_consen 203 YEGNVYSADLSGDSAKFGKPWSLLTDAEKADGWRPGGWQLIAYHAASGRLYVLMHQGGEGSHKDPGTEVWVYDLKTHKRV 282 (342)
T ss_dssp TTSEEEEEEETTSSEEEEEEEESS-HHHHHTTEEE-SSS-EEEETTTTEEEEEEEE--TT-TTS-EEEEEEEETTTTEEE
T ss_pred cCCEEEEEeccCCcccccCcccccCccccccCcCCcceeeeeeccccCeEEEEecCCCCCCccCCceEEEEEECCCCeEE
Confidence 899999999865432222222110 000 0112266766555444321 1 22 2666677776653
Q ss_pred CceeccccCCeEEEEeCCCCCCeEEEE-eCCCcEEEEeCCCCccccccc
Q 010390 356 PIKLKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 356 ~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~~~ 403 (512)
..+. -..++.+|+.+.+..-+|++. ..++.|.+||..+|+.++...
T Consensus 283 -~Ri~-l~~~~~Si~Vsqd~~P~L~~~~~~~~~l~v~D~~tGk~~~~~~ 329 (342)
T PF06433_consen 283 -ARIP-LEHPIDSIAVSQDDKPLLYALSAGDGTLDVYDAATGKLVRSIE 329 (342)
T ss_dssp -EEEE-EEEEESEEEEESSSS-EEEEEETTTTEEEEEETTT--EEEEE-
T ss_pred -EEEe-CCCccceEEEccCCCcEEEEEcCCCCeEEEEeCcCCcEEeehh
Confidence 3332 134677999998875566655 468999999999999877644
No 353
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.73 E-value=0.0052 Score=62.12 Aligned_cols=135 Identities=13% Similarity=0.172 Sum_probs=90.0
Q ss_pred CCCcEEEEECCCCCCccccccccccccceeccccCCCc-EEEEEEec-----CCCEEEEEeCCCcEEEEeCCCCe--eee
Q 010390 73 EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNA-IFDLCWIK-----EDTNILTASGDQTIKIWDAEKKK--CTG 144 (512)
Q Consensus 73 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~-V~~l~~s~-----~~~~l~s~~~dg~i~iwd~~~~~--~~~ 144 (512)
....|+-.|++.++ .+..|..|... |..++=.. +....+.|-.+..+..||.+-.. ++.
T Consensus 502 ~~~~ly~mDLe~GK-------------VV~eW~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR~~~~k~v~ 568 (794)
T PF08553_consen 502 NPNKLYKMDLERGK-------------VVEEWKVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPRLSGNKLVD 568 (794)
T ss_pred CCCceEEEecCCCc-------------EEEEeecCCCcceeEecccccccccCCCceEEEECCCceEEeccCCCCCceee
Confidence 34567777777664 37778877654 55554221 23445677788889999987532 221
Q ss_pred c-c--cCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccc
Q 010390 145 A-L--MGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASM 221 (512)
Q Consensus 145 ~-~--~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 221 (512)
. . ........|++-..+| +||.|+.+|.||+||--..+ ....+.+-..
T Consensus 569 ~~~k~Y~~~~~Fs~~aTt~~G--~iavgs~~G~IRLyd~~g~~---------------------------AKT~lp~lG~ 619 (794)
T PF08553_consen 569 SQSKQYSSKNNFSCFATTEDG--YIAVGSNKGDIRLYDRLGKR---------------------------AKTALPGLGD 619 (794)
T ss_pred ccccccccCCCceEEEecCCc--eEEEEeCCCcEEeecccchh---------------------------hhhcCCCCCC
Confidence 1 1 1133456777766554 89999999999999943211 1113345567
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~ 251 (512)
+|..|..+.||+++++++ +..|.++++.
T Consensus 620 pI~~iDvt~DGkwilaTc--~tyLlLi~t~ 647 (794)
T PF08553_consen 620 PIIGIDVTADGKWILATC--KTYLLLIDTL 647 (794)
T ss_pred CeeEEEecCCCcEEEEee--cceEEEEEEe
Confidence 999999999999999876 7888888864
No 354
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.68 E-value=0.00022 Score=67.56 Aligned_cols=98 Identities=15% Similarity=0.185 Sum_probs=76.5
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEE-EEEEecCCCEEEEEe
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIF-DLCWIKEDTNILTAS 127 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~-~l~~s~~~~~l~s~~ 127 (512)
-..-...+.++-|+|.-.+||++..+|.|.+..++- +.+-++.-|...++ +++|.|||+.||.|-
T Consensus 16 ~~~l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n~--------------qRlwtip~p~~~v~~sL~W~~DGkllaVg~ 81 (665)
T KOG4640|consen 16 VMSLPINIKRIEWNPKMDLIATRTEKGELLIHRLNW--------------QRLWTIPIPGENVTASLCWRPDGKLLAVGF 81 (665)
T ss_pred hhccccceEEEEEcCccchhheeccCCcEEEEEecc--------------ceeEeccCCCCccceeeeecCCCCEEEEEe
Confidence 333445666777799999999999999999988762 23556665767777 999999999999999
Q ss_pred CCCcEEEEeCCCCeeeecc-cCcCCCEEEEEeeC
Q 010390 128 GDQTIKIWDAEKKKCTGAL-MGHTGSIKSLCSHP 160 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~-~~h~~~v~~l~~~~ 160 (512)
.||+|++.|++++..+... ..-..+|.++.|.+
T Consensus 82 kdG~I~L~Dve~~~~l~~~~~s~e~~is~~~w~~ 115 (665)
T KOG4640|consen 82 KDGTIRLHDVEKGGRLVSFLFSVETDISKGIWDR 115 (665)
T ss_pred cCCeEEEEEccCCCceeccccccccchheeeccc
Confidence 9999999999998776663 22445788888864
No 355
>PF14583 Pectate_lyase22: Oligogalacturonate lyase; PDB: 3C5M_C 3PE7_A.
Probab=97.67 E-value=0.0079 Score=55.12 Aligned_cols=226 Identities=12% Similarity=0.057 Sum_probs=97.3
Q ss_pred EEecCCCEEEEEeC-C--CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccc
Q 010390 115 CWIKEDTNILTASG-D--QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCA 191 (512)
Q Consensus 115 ~~s~~~~~l~s~~~-d--g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~ 191 (512)
+|.+||+.|+.++. | ..+.+.|+.+++..+.-.+.........++|++ +.++-...+..|+-.|+.+.+.....
T Consensus 42 ~ft~dG~kllF~s~~dg~~nly~lDL~t~~i~QLTdg~g~~~~g~~~s~~~-~~~~Yv~~~~~l~~vdL~T~e~~~vy-- 118 (386)
T PF14583_consen 42 CFTDDGRKLLFASDFDGNRNLYLLDLATGEITQLTDGPGDNTFGGFLSPDD-RALYYVKNGRSLRRVDLDTLEERVVY-- 118 (386)
T ss_dssp -B-TTS-EEEEEE-TTSS-EEEEEETTT-EEEE---SS-B-TTT-EE-TTS-SEEEEEETTTEEEEEETTT--EEEEE--
T ss_pred CcCCCCCEEEEEeccCCCcceEEEEcccCEEEECccCCCCCccceEEecCC-CeEEEEECCCeEEEEECCcCcEEEEE--
Confidence 56778988776554 4 457777999988766544322223345667877 55554545568888888876432111
Q ss_pred cceeeecccccccccccccccceecccccccEEEEEEe--ecCCEEEEEee---------------------cCCeEEEE
Q 010390 192 ESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL--KDEVSIATASA---------------------VNSIVKFW 248 (512)
Q Consensus 192 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~g~---------------------~dg~i~iw 248 (512)
......+-...|. .++..++-+-. -...|.-.
T Consensus 119 -------------------------~~p~~~~g~gt~v~n~d~t~~~g~e~~~~d~~~l~~~~~f~e~~~a~p~~~i~~i 173 (386)
T PF14583_consen 119 -------------------------EVPDDWKGYGTWVANSDCTKLVGIEISREDWKPLTKWKGFREFYEARPHCRIFTI 173 (386)
T ss_dssp -------------------------E--TTEEEEEEEEE-TTSSEEEEEEEEGGG-----SHHHHHHHHHC---EEEEEE
T ss_pred -------------------------ECCcccccccceeeCCCccEEEEEEEeehhccCccccHHHHHHHhhCCCceEEEE
Confidence 1111122223332 22333221100 11234444
Q ss_pred eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCC-----eEEEEEcccCCCCceEeeeeceeceeE
Q 010390 249 DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH-----RIYLYNVLQLDKGPIQHFSGCRIESFY 323 (512)
Q Consensus 249 d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~ 323 (512)
|+.+++... .......+..+.++|...-+++-|.+| .-+||-+.... .....+..+.....+
T Consensus 174 dl~tG~~~~------------v~~~~~wlgH~~fsP~dp~li~fCHEGpw~~Vd~RiW~i~~dg-~~~~~v~~~~~~e~~ 240 (386)
T PF14583_consen 174 DLKTGERKV------------VFEDTDWLGHVQFSPTDPTLIMFCHEGPWDLVDQRIWTINTDG-SNVKKVHRRMEGESV 240 (386)
T ss_dssp ETTT--EEE------------EEEESS-EEEEEEETTEEEEEEEEE-S-TTTSS-SEEEEETTS----EESS---TTEEE
T ss_pred ECCCCceeE------------EEecCccccCcccCCCCCCEEEEeccCCcceeceEEEEEEcCC-CcceeeecCCCCccc
Confidence 555544322 223345577888998766666655543 13566654322 222222222223334
Q ss_pred EEEEECCCCCEEEE-----ecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCC
Q 010390 324 VKSEICPNASHILS-----GSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDD 385 (512)
Q Consensus 324 ~~~~~s~~~~~l~~-----g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~d 385 (512)
..--|.|||..|.- ++.+..|.-+|..+++.. .+ ........+--++|+ .+++-=+.|
T Consensus 241 gHEfw~~DG~~i~y~~~~~~~~~~~i~~~d~~t~~~~--~~-~~~p~~~H~~ss~Dg-~L~vGDG~d 303 (386)
T PF14583_consen 241 GHEFWVPDGSTIWYDSYTPGGQDFWIAGYDPDTGERR--RL-MEMPWCSHFMSSPDG-KLFVGDGGD 303 (386)
T ss_dssp EEEEE-TTSS-EEEEEEETTT--EEEEEE-TTT--EE--EE-EEE-SEEEEEE-TTS-SEEEEEE--
T ss_pred ccccccCCCCEEEEEeecCCCCceEEEeeCCCCCCce--EE-EeCCceeeeEEcCCC-CEEEecCCC
Confidence 45578999987743 223445777777766442 22 112244456667887 555543444
No 356
>COG0823 TolB Periplasmic component of the Tol biopolymer transport system [Intracellular trafficking and secretion]
Probab=97.66 E-value=0.003 Score=60.04 Aligned_cols=203 Identities=16% Similarity=0.106 Sum_probs=112.3
Q ss_pred cEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeecccccccccc
Q 010390 131 TIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLL 207 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 207 (512)
.+.+=|.. +.....+......+..-.|+|++..+....-.. ..+.++|+.++.......
T Consensus 174 ~l~~~D~d-g~~~~~l~~~~~~~~~p~ws~~~~~~~y~~f~~~~~~~i~~~~l~~g~~~~i~~----------------- 235 (425)
T COG0823 174 ELALGDYD-GYNQQKLTDSGSLILTPAWSPDGKKLAYVSFELGGCPRIYYLDLNTGKRPVILN----------------- 235 (425)
T ss_pred eEEEEccC-CcceeEecccCcceeccccCcCCCceEEEEEecCCCceEEEEeccCCccceeec-----------------
Confidence 34444433 444445544555677778999884433332222 358889998776543221
Q ss_pred cccccceecccccccEEEEEEeecCCEEEEEeecCCeE--EEEeccCccceecccCCCccccccccccccCeeEEEeCCC
Q 010390 208 SQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIV--KFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN 285 (512)
Q Consensus 208 ~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i--~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~ 285 (512)
..+.-..-.|+|||+.++.+...||.. .+.|+....... +....+.-..=.|+||
T Consensus 236 -----------~~g~~~~P~fspDG~~l~f~~~rdg~~~iy~~dl~~~~~~~------------Lt~~~gi~~~Ps~spd 292 (425)
T COG0823 236 -----------FNGNNGAPAFSPDGSKLAFSSSRDGSPDIYLMDLDGKNLPR------------LTNGFGINTSPSWSPD 292 (425)
T ss_pred -----------cCCccCCccCCCCCCEEEEEECCCCCccEEEEcCCCCccee------------cccCCccccCccCCCC
Confidence 123344567999999999988888864 555666555221 1111122235678999
Q ss_pred CCEEEEEe-cCCe--EEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCC--EEEEecCCCCCCCcee
Q 010390 286 GVFLTASC-MDHR--IYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGN--AYVWQVNKPQADPIKL 359 (512)
Q Consensus 286 ~~~l~~~~-~dg~--i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~--i~iw~~~~~~~~~~~~ 359 (512)
|+.++-.+ ..|. |.++|...... ...+....... ...|+|||++|+..+. +|. |.+.++.++.. . ..
T Consensus 293 G~~ivf~Sdr~G~p~I~~~~~~g~~~-~riT~~~~~~~----~p~~SpdG~~i~~~~~~~g~~~i~~~~~~~~~~-~-~~ 365 (425)
T COG0823 293 GSKIVFTSDRGGRPQIYLYDLEGSQV-TRLTFSGGGNS----NPVWSPDGDKIVFESSSGGQWDIDKNDLASGGK-I-RI 365 (425)
T ss_pred CCEEEEEeCCCCCcceEEECCCCCce-eEeeccCCCCc----CccCCCCCCEEEEEeccCCceeeEEeccCCCCc-E-EE
Confidence 99877654 4555 55555433222 11122221111 4689999999977664 344 66666655543 1 22
Q ss_pred ccccCCeEEEEeCCCCCCeEEEE
Q 010390 360 KSHDGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~~~~~l~s~ 382 (512)
..+......-.|.+++ ..++..
T Consensus 366 lt~~~~~e~ps~~~ng-~~i~~~ 387 (425)
T COG0823 366 LTSTYLNESPSWAPNG-RMIMFS 387 (425)
T ss_pred ccccccCCCCCcCCCC-ceEEEe
Confidence 2233334455677777 444433
No 357
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.66 E-value=0.027 Score=53.42 Aligned_cols=250 Identities=13% Similarity=0.093 Sum_probs=152.6
Q ss_pred cEEEEEEecCCCEEEEEe-CCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCC
Q 010390 110 AIFDLCWIKEDTNILTAS-GDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKS 188 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 188 (512)
....+...+++..+.... ....+.+-+................-..++.++.+.+.++....+..|.+.|.........
T Consensus 32 ~~~~v~~~~~g~~~~v~~~~~~~~~~~~~~~n~~~~~~~~g~~~p~~i~v~~~~~~vyv~~~~~~~v~vid~~~~~~~~~ 111 (381)
T COG3391 32 GPGGVAVNPDGTQVYVANSGSNDVSVIDATSNTVTQSLSVGGVYPAGVAVNPAGNKVYVTTGDSNTVSVIDTATNTVLGS 111 (381)
T ss_pred CCceeEEcCccCEEEEEeecCceeeecccccceeeeeccCCCccccceeeCCCCCeEEEecCCCCeEEEEcCcccceeeE
Confidence 455667777775554333 2224555554422222212211134456788888866777777778999999654433221
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEee--cCCeEEEEeccCccceecccCCCccc
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA--VNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
. .-......+++.++++.+.++.. .++.+.+.|..+.+......
T Consensus 112 ~----------------------------~vG~~P~~~~~~~~~~~vYV~n~~~~~~~vsvid~~t~~~~~~~~------ 157 (381)
T COG3391 112 I----------------------------PVGLGPVGLAVDPDGKYVYVANAGNGNNTVSVIDAATNKVTATIP------ 157 (381)
T ss_pred e----------------------------eeccCCceEEECCCCCEEEEEecccCCceEEEEeCCCCeEEEEEe------
Confidence 1 11115678899999998888776 46889999988877765421
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCCCceEeee-eceeceeEEEEEECCCCCEEEEecCC---
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDKGPIQHFS-GCRIESFYVKSEICPNASHILSGSSD--- 341 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~~~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~d--- 341 (512)
.+. .+ ..++++|+|..+++.. .++.|.+.|........ .... ..........+.++++|.++.+....
T Consensus 158 ----vG~-~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~ 230 (381)
T COG3391 158 ----VGN-TP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVGSLVGVGTGPAGIAVDPDGNRVYVANDGSGS 230 (381)
T ss_pred ----cCC-Cc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccccccccCCCCceEEECCCCCEEEEEeccCCC
Confidence 111 22 7899999999777665 78899999965432211 0000 01111223347899999976554433
Q ss_pred CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE-eCCCcEEEEeCCCCccccc
Q 010390 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS-SDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~-~~dg~i~vwd~~~~~~~~~ 401 (512)
+.+...|..+..........-......+..+|++ ..+... +..+.+.+-|..+......
T Consensus 231 ~~v~~id~~~~~v~~~~~~~~~~~~~~v~~~p~g-~~~yv~~~~~~~V~vid~~~~~v~~~ 290 (381)
T COG3391 231 NNVLKIDTATGNVTATDLPVGSGAPRGVAVDPAG-KAAYVANSQGGTVSVIDGATDRVVKT 290 (381)
T ss_pred ceEEEEeCCCceEEEeccccccCCCCceeECCCC-CEEEEEecCCCeEEEEeCCCCceeee
Confidence 5888888877654222111111146678999999 565555 5558899999888776654
No 358
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=97.59 E-value=0.089 Score=52.11 Aligned_cols=230 Identities=10% Similarity=0.034 Sum_probs=108.9
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG 144 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 144 (512)
+..|.+++.++.|.-.|..+++..-........ ...........-..+++ .+..++.++.|+.|.-.|..+|+.+.
T Consensus 69 ~g~vyv~s~~g~v~AlDa~TGk~lW~~~~~~~~--~~~~~~~~~~~~rg~av--~~~~v~v~t~dg~l~ALDa~TGk~~W 144 (527)
T TIGR03075 69 DGVMYVTTSYSRVYALDAKTGKELWKYDPKLPD--DVIPVMCCDVVNRGVAL--YDGKVFFGTLDARLVALDAKTGKVVW 144 (527)
T ss_pred CCEEEEECCCCcEEEEECCCCceeeEecCCCCc--ccccccccccccccceE--ECCEEEEEcCCCEEEEEECCCCCEEe
Confidence 456666777888888898887542211100000 00000000000011222 23467778889999999999999877
Q ss_pred cccCc--C--CCEEE-EEeeCCCCCeEEEEe------CCCcEEEEeCCCCCCCCCccccceeee----cc----cccccc
Q 010390 145 ALMGH--T--GSIKS-LCSHPTNSDILVSGS------RDGSFAIWDLRCKSSPKSNCAESFVFS----SA----VVKGAH 205 (512)
Q Consensus 145 ~~~~h--~--~~v~~-l~~~~~~~~~l~s~~------~dg~i~vwd~~~~~~~~~~~~~~~~~~----~~----~~~~~~ 205 (512)
..... . ..+.+ -... + ..++.+. .+|.|..+|.++++.+-.......... .. ...+..
T Consensus 145 ~~~~~~~~~~~~~tssP~v~--~-g~Vivg~~~~~~~~~G~v~AlD~~TG~~lW~~~~~p~~~~~~~~~~~~~~~~~~~~ 221 (527)
T TIGR03075 145 SKKNGDYKAGYTITAAPLVV--K-GKVITGISGGEFGVRGYVTAYDAKTGKLVWRRYTVPGDMGYLDKADKPVGGEPGAK 221 (527)
T ss_pred ecccccccccccccCCcEEE--C-CEEEEeecccccCCCcEEEEEECCCCceeEeccCcCCCcccccccccccccccccC
Confidence 65421 1 11211 1111 2 3444443 268899999998886644322110000 00 000000
Q ss_pred cccccccceecccccccE-EEEEEeecCCEEEEEeec----CC-----------eEEEEeccCccceecccCCCcccccc
Q 010390 206 LLSQSKRVSRRKAASMSI-TSVLYLKDEVSIATASAV----NS-----------IVKFWDTRNLKAQITQAWPHAESSSA 269 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v-~~~~~~~~~~~l~~~g~~----dg-----------~i~iwd~~~~~~~~~~~~~~~~~~~~ 269 (512)
.. .. .........+ ..+.+.+....++...++ ++ .|.-.|+++++....+...+...- .
T Consensus 222 tw-~~---~~~~~gg~~~W~~~s~D~~~~lvy~~tGnp~p~~~~~r~gdnl~~~s~vAld~~TG~~~W~~Q~~~~D~w-D 296 (527)
T TIGR03075 222 TW-PG---DAWKTGGGATWGTGSYDPETNLIYFGTGNPSPWNSHLRPGDNLYTSSIVARDPDTGKIKWHYQTTPHDEW-D 296 (527)
T ss_pred CC-CC---CccccCCCCccCceeEcCCCCeEEEeCCCCCCCCCCCCCCCCccceeEEEEccccCCEEEeeeCCCCCCc-c
Confidence 00 00 0001111122 234555555544442222 11 567778888888776543221100 0
Q ss_pred ccccccCeeEEEeCCCCC---EEEEEecCCeEEEEEcccCC
Q 010390 270 KETRLHGISSLSQDSNGV---FLTASCMDHRIYLYNVLQLD 307 (512)
Q Consensus 270 ~~~~~~~i~~~~~~~~~~---~l~~~~~dg~i~i~d~~~~~ 307 (512)
+... ....-+.+..+|+ .++.+..+|.+++.|-.+++
T Consensus 297 ~d~~-~~p~l~d~~~~G~~~~~v~~~~K~G~~~vlDr~tG~ 336 (527)
T TIGR03075 297 YDGV-NEMILFDLKKDGKPRKLLAHADRNGFFYVLDRTNGK 336 (527)
T ss_pred ccCC-CCcEEEEeccCCcEEEEEEEeCCCceEEEEECCCCc
Confidence 0000 1122233334665 77788999999999987654
No 359
>PF04841 Vps16_N: Vps16, N-terminal region; InterPro: IPR006926 This protein forms part of the Class C vacuolar protein sorting (Vps) complex. Vps16 is essential for vacuolar protein sorting, which is essential for viability in plants, but not yeast []. The Class C Vps complex is required for SNARE-mediated membrane fusion at the lysosome-like yeast vacuole. It is thought to play essential roles in membrane docking and fusion at the Golgi-to-endosome and endosome-to-vacuole stages of transport []. The role of VPS16 in this complex is not known.; GO: 0006886 intracellular protein transport, 0005737 cytoplasm
Probab=97.59 E-value=0.076 Score=50.80 Aligned_cols=63 Identities=16% Similarity=0.351 Sum_probs=42.8
Q ss_pred cCCCcEEEEeeCC----------C-cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 62 SKNSHIFAVSDED----------G-YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 62 s~~~~~latg~~d----------g-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
+|.|..+|....+ . .|.||+..... +..+.--.+.|.++.|+.+ ..|+.-..||
T Consensus 37 a~~gGpIAi~~d~~k~~~~~~~~p~~I~iys~sG~l--------------l~~i~w~~~~iv~~~wt~~-e~LvvV~~dG 101 (410)
T PF04841_consen 37 APYGGPIAIIRDESKLVPVGSAKPNSIQIYSSSGKL--------------LSSIPWDSGRIVGMGWTDD-EELVVVQSDG 101 (410)
T ss_pred cCCCceEEEEecCcccccccCCCCcEEEEECCCCCE--------------eEEEEECCCCEEEEEECCC-CeEEEEEcCC
Confidence 6667666666433 2 48888876542 3333223389999999875 5566667899
Q ss_pred cEEEEeCCC
Q 010390 131 TIKIWDAEK 139 (512)
Q Consensus 131 ~i~iwd~~~ 139 (512)
.++++|+..
T Consensus 102 ~v~vy~~~G 110 (410)
T PF04841_consen 102 TVRVYDLFG 110 (410)
T ss_pred EEEEEeCCC
Confidence 999999863
No 360
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.59 E-value=0.00014 Score=42.52 Aligned_cols=36 Identities=25% Similarity=0.529 Sum_probs=32.3
Q ss_pred eeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390 101 ISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWD 136 (512)
Q Consensus 101 ~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd 136 (512)
...+..|...|.++.|.+++..+++++.|+.+++|+
T Consensus 5 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 5 LKTLKGHTGPVTSVAFSPDGKYLASASDDGTIKLWD 40 (40)
T ss_pred EEEEEecCCceeEEEECCCCCEEEEecCCCeEEEcC
Confidence 455668889999999999999999999999999996
No 361
>KOG4640 consensus Anaphase-promoting complex (APC), subunit 4 [Cell cycle control, cell division, chromosome partitioning; Posttranslational modification, protein turnover, chaperones]
Probab=97.52 E-value=0.00051 Score=65.17 Aligned_cols=80 Identities=19% Similarity=0.209 Sum_probs=70.4
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEE-EEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIK-SLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 185 (512)
-...|.-+.|+|.-+.||.+..+|.|.+..++ .+.+.++.-|...++ +++|.|+| ++|+.|-.||+|++.|++.+..
T Consensus 19 l~~~i~~~ewnP~~dLiA~~t~~gelli~R~n-~qRlwtip~p~~~v~~sL~W~~DG-kllaVg~kdG~I~L~Dve~~~~ 96 (665)
T KOG4640|consen 19 LPINIKRIEWNPKMDLIATRTEKGELLIHRLN-WQRLWTIPIPGENVTASLCWRPDG-KLLAVGFKDGTIRLHDVEKGGR 96 (665)
T ss_pred cccceEEEEEcCccchhheeccCCcEEEEEec-cceeEeccCCCCccceeeeecCCC-CEEEEEecCCeEEEEEccCCCc
Confidence 34578889999999999999999999999987 777888887777777 99999998 9999999999999999998876
Q ss_pred CCC
Q 010390 186 PKS 188 (512)
Q Consensus 186 ~~~ 188 (512)
...
T Consensus 97 l~~ 99 (665)
T KOG4640|consen 97 LVS 99 (665)
T ss_pred eec
Confidence 553
No 362
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=97.51 E-value=0.028 Score=52.14 Aligned_cols=218 Identities=12% Similarity=0.112 Sum_probs=91.2
Q ss_pred CCCcEEEEee-CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC------CCcEEEE
Q 010390 63 KNSHIFAVSD-EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG------DQTIKIW 135 (512)
Q Consensus 63 ~~~~~latg~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~------dg~i~iw 135 (512)
.+.++|+..+ ..+.|.|+|+.+....-..++. .+...+.. +.--..-..+..-|+|+.++|+-. -|-+.+.
T Consensus 85 ~~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~Kv-Ie~~ev~~-k~g~s~PHT~Hclp~G~imIS~lGd~~G~g~Ggf~ll 162 (461)
T PF05694_consen 85 KERRYLILPGLRSSRIYVIDTKTDPRKPRLHKV-IEPEEVFE-KTGLSRPHTVHCLPDGRIMISALGDADGNGPGGFVLL 162 (461)
T ss_dssp --S-EEEEEBTTT--EEEEE--S-TTS-EEEEE-E-HHHHHH-HH-EEEEEEEEE-SS--EEEEEEEETTS-S--EEEEE
T ss_pred ccCCcEEeeeeccCcEEEEECCCCCCCCceEee-eCHHHHHh-hcCCCCCceeeecCCccEEEEeccCCCCCCCCcEEEE
Confidence 3456777765 7889999999854221111110 11101110 001122333444578988887533 2558888
Q ss_pred eCCCCeeeecccCcC---CCEEEEEeeCCCCCeEEEEe--------------------CCCcEEEEeCCCCCCCCCcccc
Q 010390 136 DAEKKKCTGALMGHT---GSIKSLCSHPTNSDILVSGS--------------------RDGSFAIWDLRCKSSPKSNCAE 192 (512)
Q Consensus 136 d~~~~~~~~~~~~h~---~~v~~l~~~~~~~~~l~s~~--------------------~dg~i~vwd~~~~~~~~~~~~~ 192 (512)
|-++.+......... ..-..+-|.|.. +.++|.. ...++.+||+.+.+.++.+...
T Consensus 163 D~~tf~v~g~We~~~~~~~~gYDfw~qpr~-nvMiSSeWg~P~~~~~Gf~~~d~~~~~yG~~l~vWD~~~r~~~Q~idLg 241 (461)
T PF05694_consen 163 DGETFEVKGRWEKDRGPQPFGYDFWYQPRH-NVMISSEWGAPSMFEKGFNPEDLEAGKYGHSLHVWDWSTRKLLQTIDLG 241 (461)
T ss_dssp -TTT--EEEE--SB-TT------EEEETTT-TEEEE-B---HHHHTT---TTTHHHH-S--EEEEEETTTTEEEEEEES-
T ss_pred cCccccccceeccCCCCCCCCCCeEEcCCC-CEEEEeccCChhhcccCCChhHhhcccccCeEEEEECCCCcEeeEEecC
Confidence 888777766654322 234566677866 7777765 2368999999877654433211
Q ss_pred ceeeecccccccccccccccceecccccccEEEEEEe--ecCCEEEEEeecCCeEEEEec-cCccceec--ccCCCc---
Q 010390 193 SFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL--KDEVSIATASAVNSIVKFWDT-RNLKAQIT--QAWPHA--- 264 (512)
Q Consensus 193 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~--~~~~~l~~~g~~dg~i~iwd~-~~~~~~~~--~~~~~~--- 264 (512)
........+.|. |+...-++.+...++|..|-- ..++-... ...+..
T Consensus 242 -------------------------~~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip~~~v~ 296 (461)
T PF05694_consen 242 -------------------------EEGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIPAKKVE 296 (461)
T ss_dssp -------------------------TTEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE--EE--
T ss_pred -------------------------CCCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECCCcccC
Confidence 111124445553 444444443434555555543 32221111 000000
Q ss_pred -----cccccccccccCeeEEEeCCCCCEEEEEe-cCCeEEEEEcccCCC
Q 010390 265 -----ESSSAKETRLHGISSLSQDSNGVFLTASC-MDHRIYLYNVLQLDK 308 (512)
Q Consensus 265 -----~~~~~~~~~~~~i~~~~~~~~~~~l~~~~-~dg~i~i~d~~~~~~ 308 (512)
.....+..-..-|+.+.+|.|.++|++++ ..|.|+.||+.+...
T Consensus 297 ~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~ 346 (461)
T PF05694_consen 297 GWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFN 346 (461)
T ss_dssp SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS
T ss_pred cccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCC
Confidence 00001111124489999999999999888 689999999977543
No 363
>PF03178 CPSF_A: CPSF A subunit region; InterPro: IPR004871 This family includes a region that lies towards the C terminus of the cleavage and polyadenylation specificity factor (CPSF) A (160 kDa) subunit. CPSF is involved in mRNA polyadenylation and binds the AAUAAA conserved sequence in pre-mRNA. CPSF has also been found to be necessary for splicing of single-intron pre-mRNAs []. The function of the aligned region is unknown but may be involved in RNA/DNA binding.; GO: 0003676 nucleic acid binding, 0005634 nucleus; PDB: 2B5M_A 4A0K_C 4A0B_C 3I7L_A 3I8E_A 4A09_A 4A0A_A 3EI4_C 2B5L_A 3I7O_A ....
Probab=97.50 E-value=0.04 Score=51.04 Aligned_cols=186 Identities=15% Similarity=0.198 Sum_probs=100.4
Q ss_pred CCEEEEEeC----------CCcEEEEeCCCC-----ee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 120 DTNILTASG----------DQTIKIWDAEKK-----KC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 120 ~~~l~s~~~----------dg~i~iwd~~~~-----~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
..+|+.|+. .|.|.++++... +. +... ...++|++++-.. + . |+++. ++.|.+|++..
T Consensus 42 ~~~ivVGT~~~~~~~~~~~~Gri~v~~i~~~~~~~~~l~~i~~~-~~~g~V~ai~~~~-~-~-lv~~~-g~~l~v~~l~~ 116 (321)
T PF03178_consen 42 KEYIVVGTAFNYGEDPEPSSGRILVFEISESPENNFKLKLIHST-EVKGPVTAICSFN-G-R-LVVAV-GNKLYVYDLDN 116 (321)
T ss_dssp SEEEEEEEEE--TTSSS-S-EEEEEEEECSS-----EEEEEEEE-EESS-EEEEEEET-T-E-EEEEE-TTEEEEEEEET
T ss_pred cCEEEEEecccccccccccCcEEEEEEEEcccccceEEEEEEEE-eecCcceEhhhhC-C-E-EEEee-cCEEEEEEccC
Confidence 467776654 288999999884 22 2222 3568899998772 3 4 44444 37999999986
Q ss_pred CC-CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccC
Q 010390 183 KS-SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAW 261 (512)
Q Consensus 183 ~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~ 261 (512)
.+ .... ........+.++... +..+++ |.....+.++..+.........
T Consensus 117 ~~~l~~~--------------------------~~~~~~~~i~sl~~~--~~~I~v-gD~~~sv~~~~~~~~~~~l~~v- 166 (321)
T PF03178_consen 117 SKTLLKK--------------------------AFYDSPFYITSLSVF--KNYILV-GDAMKSVSLLRYDEENNKLILV- 166 (321)
T ss_dssp TSSEEEE--------------------------EEE-BSSSEEEEEEE--TTEEEE-EESSSSEEEEEEETTTE-EEEE-
T ss_pred cccchhh--------------------------heecceEEEEEEecc--ccEEEE-EEcccCEEEEEEEccCCEEEEE-
Confidence 65 1110 001112245555554 456665 5566677776544321111100
Q ss_pred CCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC-----CCC-ceEeeeeceeceeEEEE---EECCC-
Q 010390 262 PHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL-----DKG-PIQHFSGCRIESFYVKS---EICPN- 331 (512)
Q Consensus 262 ~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~-----~~~-~~~~~~~~~~~~~~~~~---~~s~~- 331 (512)
........++++.+-.+++.++++..+|.+.++..... ... .+...........++++ ++.|.
T Consensus 167 -------a~d~~~~~v~~~~~l~d~~~~i~~D~~gnl~~l~~~~~~~~~~~~~~~L~~~~~f~lg~~v~~~~~~~l~~~~ 239 (321)
T PF03178_consen 167 -------ARDYQPRWVTAAEFLVDEDTIIVGDKDGNLFVLRYNPEIPNSRDGDPKLERISSFHLGDIVNSFRRGSLIPRS 239 (321)
T ss_dssp -------EEESS-BEEEEEEEE-SSSEEEEEETTSEEEEEEE-SS-SSTTTTTTBEEEEEEEE-SS-EEEEEE--SS--S
T ss_pred -------EecCCCccEEEEEEecCCcEEEEEcCCCeEEEEEECCCCcccccccccceeEEEEECCCccceEEEEEeeecC
Confidence 12222345888888866679999999999999987532 112 23333333344455555 44451
Q ss_pred -C------CEEEEecCCCCEEEE
Q 010390 332 -A------SHILSGSSDGNAYVW 347 (512)
Q Consensus 332 -~------~~l~~g~~dg~i~iw 347 (512)
+ ..++.++.+|.|...
T Consensus 240 ~~~~~~~~~~i~~~T~~G~Ig~l 262 (321)
T PF03178_consen 240 GSSESPNRPQILYGTVDGSIGVL 262 (321)
T ss_dssp SSS-TTEEEEEEEEETTS-EEEE
T ss_pred CCCcccccceEEEEecCCEEEEE
Confidence 2 247777788888743
No 364
>COG3391 Uncharacterized conserved protein [Function unknown]
Probab=97.48 E-value=0.051 Score=51.56 Aligned_cols=202 Identities=13% Similarity=0.131 Sum_probs=132.6
Q ss_pred cceEEEEEecCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC---
Q 010390 53 PLAVSFCKTSKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG--- 128 (512)
Q Consensus 53 v~~v~~~~~s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~--- 128 (512)
...++. ++++. ..++...++.|.+.|...... .... .-...-..+++++++..+..+..
T Consensus 76 p~~i~v---~~~~~~vyv~~~~~~~v~vid~~~~~~-------------~~~~-~vG~~P~~~~~~~~~~~vYV~n~~~~ 138 (381)
T COG3391 76 PAGVAV---NPAGNKVYVTTGDSNTVSVIDTATNTV-------------LGSI-PVGLGPVGLAVDPDGKYVYVANAGNG 138 (381)
T ss_pred ccceee---CCCCCeEEEecCCCCeEEEEcCcccce-------------eeEe-eeccCCceEEECCCCCEEEEEecccC
Confidence 345666 77777 455555568999999655432 1111 11126678999999988876655
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
++++.+.|..+++.+.....-..+ ..+++.|++...+++-..++.|.+.|........ ....
T Consensus 139 ~~~vsvid~~t~~~~~~~~vG~~P-~~~a~~p~g~~vyv~~~~~~~v~vi~~~~~~v~~-~~~~---------------- 200 (381)
T COG3391 139 NNTVSVIDAATNKVTATIPVGNTP-TGVAVDPDGNKVYVTNSDDNTVSVIDTSGNSVVR-GSVG---------------- 200 (381)
T ss_pred CceEEEEeCCCCeEEEEEecCCCc-ceEEECCCCCeEEEEecCCCeEEEEeCCCcceec-cccc----------------
Confidence 688999999988888775443344 8899999995566666678999999966544331 1000
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecC--CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVN--SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d--g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (512)
...........+.+.+++..+.+....+ +.+...|..+........ ..... ....+..+|+|
T Consensus 201 ------~~~~~~~~P~~i~v~~~g~~~yV~~~~~~~~~v~~id~~~~~v~~~~~---------~~~~~-~~~~v~~~p~g 264 (381)
T COG3391 201 ------SLVGVGTGPAGIAVDPDGNRVYVANDGSGSNNVLKIDTATGNVTATDL---------PVGSG-APRGVAVDPAG 264 (381)
T ss_pred ------cccccCCCCceEEECCCCCEEEEEeccCCCceEEEEeCCCceEEEecc---------ccccC-CCCceeECCCC
Confidence 0112233456788999999877765444 588888888876554311 11111 35668899999
Q ss_pred CEEEEEecC-CeEEEEEccc
Q 010390 287 VFLTASCMD-HRIYLYNVLQ 305 (512)
Q Consensus 287 ~~l~~~~~d-g~i~i~d~~~ 305 (512)
..+.+.... +.+.+-|...
T Consensus 265 ~~~yv~~~~~~~V~vid~~~ 284 (381)
T COG3391 265 KAAYVANSQGGTVSVIDGAT 284 (381)
T ss_pred CEEEEEecCCCeEEEEeCCC
Confidence 998888544 7888888644
No 365
>PF00780 CNH: CNH domain; InterPro: IPR001180 Based on sequence similarities a domain of homology has been identified in the following proteins []: Citron and Citron kinase. These two proteins interact with the GTP-bound forms of the small GTPases Rho and Rac but not with Cdc42. Myotonic dystrophy kinase-related Cdc42-binding kinase (MRCKalpha). This serine/threonine kinase interacts with the GTP-bound form of the small GTPase Cdc42 and to a lesser extent with that of Rac. NCK Interacting Kinase (NIK), a serine/threonine protein kinase. ROM-1 and ROM-2, from yeast. These proteins are GDP/GTP exchange proteins (GEPs) for the small GTP binding protein Rho1. This domain, called the citron homology domain, is often found after cysteine rich and pleckstrin homology (PH) domains at the C-terminal end of the proteins []. It acts as a regulatory domain and could be involved in macromolecular interactions [, ].; GO: 0005083 small GTPase regulator activity
Probab=97.44 E-value=0.084 Score=47.70 Aligned_cols=237 Identities=12% Similarity=0.068 Sum_probs=122.6
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390 63 KNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 63 ~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 142 (512)
..++.|+.|+.+| |.+++...... .... .+...|..+...++-+.|++-+ |+.+.++++..-..
T Consensus 5 ~~~~~L~vGt~~G-l~~~~~~~~~~------------~~~i--~~~~~I~ql~vl~~~~~llvLs-d~~l~~~~L~~l~~ 68 (275)
T PF00780_consen 5 SWGDRLLVGTEDG-LYVYDLSDPSK------------PTRI--LKLSSITQLSVLPELNLLLVLS-DGQLYVYDLDSLEP 68 (275)
T ss_pred cCCCEEEEEECCC-EEEEEecCCcc------------ceeE--eecceEEEEEEecccCEEEEEc-CCccEEEEchhhcc
Confidence 3578899999998 89999832211 0111 1223399999999777776554 59999999876543
Q ss_pred eecc--------------cCcCCCEEEEE--eeCCCCCeEEEEeCCCcEEEEeCCCCCCCC-Cccccceeeecccccccc
Q 010390 143 TGAL--------------MGHTGSIKSLC--SHPTNSDILVSGSRDGSFAIWDLRCKSSPK-SNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 143 ~~~~--------------~~h~~~v~~l~--~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~-~~~~~~~~~~~~~~~~~~ 205 (512)
.... ......+...+ -...+...|+.+ ....|.+|......... ..
T Consensus 69 ~~~~~~~~~~~~~~~~~~~~~~~~v~~f~~~~~~~~~~~L~va-~kk~i~i~~~~~~~~~f~~~---------------- 131 (275)
T PF00780_consen 69 VSTSAPLAFPKSRSLPTKLPETKGVSFFAVNGGHEGSRRLCVA-VKKKILIYEWNDPRNSFSKL---------------- 131 (275)
T ss_pred ccccccccccccccccccccccCCeeEEeeccccccceEEEEE-ECCEEEEEEEECCcccccce----------------
Confidence 3311 11223444444 112332344444 44589998887542211 00
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc-cccccccccCeeEEEeCC
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES-SSAKETRLHGISSLSQDS 284 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~ 284 (512)
.....-...+.+++|. ++.+++ |. .....+.|+.++............. .........++..+...
T Consensus 132 --------~ke~~lp~~~~~i~~~--~~~i~v-~~-~~~f~~idl~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~- 198 (275)
T PF00780_consen 132 --------LKEISLPDPPSSIAFL--GNKICV-GT-SKGFYLIDLNTGSPSELLDPSDSSSSFKSRNSSSKPLGIFQLS- 198 (275)
T ss_pred --------eEEEEcCCCcEEEEEe--CCEEEE-Ee-CCceEEEecCCCCceEEeCccCCcchhhhcccCCCceEEEEeC-
Confidence 0111223678889998 445555 42 5668889998665433221111100 00011112233344443
Q ss_pred CCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 285 NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 285 ~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
++.+|++- +..-.+.|....... ...+.-. .....+++ ...+|++.+.++ |.||++.+++.
T Consensus 199 ~~e~Ll~~--~~~g~fv~~~G~~~r-~~~i~W~---~~p~~~~~--~~pyli~~~~~~-iEV~~~~~~~l 259 (275)
T PF00780_consen 199 DNEFLLCY--DNIGVFVNKNGEPSR-KSTIQWS---SAPQSVAY--SSPYLIAFSSNS-IEVRSLETGEL 259 (275)
T ss_pred CceEEEEe--cceEEEEcCCCCcCc-ccEEEcC---CchhEEEE--ECCEEEEECCCE-EEEEECcCCcE
Confidence 34555543 444444554322111 1111111 12223444 345777766554 99999998865
No 366
>PF14783 BBS2_Mid: Ciliary BBSome complex subunit 2, middle region
Probab=97.43 E-value=0.012 Score=43.23 Aligned_cols=66 Identities=20% Similarity=0.432 Sum_probs=50.1
Q ss_pred EEEEEEec-CC---CEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 111 IFDLCWIK-ED---TNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 111 V~~l~~s~-~~---~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
|++|++.. ++ +.|+.|+.|..|+||+ ..+.+..+.. .+.|++++-... ..|+.+-.+|+|-+|+-.
T Consensus 2 V~al~~~d~d~dg~~eLlvGs~D~~IRvf~--~~e~~~Ei~e-~~~v~~L~~~~~--~~F~Y~l~NGTVGvY~~~ 71 (111)
T PF14783_consen 2 VTALCLFDFDGDGENELLVGSDDFEIRVFK--GDEIVAEITE-TDKVTSLCSLGG--GRFAYALANGTVGVYDRS 71 (111)
T ss_pred eeEEEEEecCCCCcceEEEecCCcEEEEEe--CCcEEEEEec-ccceEEEEEcCC--CEEEEEecCCEEEEEeCc
Confidence 66777765 32 5799999999999997 3466666663 457888876654 679999999999998753
No 367
>smart00320 WD40 WD40 repeats. Note that these repeats are permuted with respect to the structural repeats (blades) of the beta propeller domain.
Probab=97.43 E-value=0.00036 Score=40.66 Aligned_cols=39 Identities=36% Similarity=0.665 Sum_probs=33.4
Q ss_pred CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEe
Q 010390 140 KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWD 179 (512)
Q Consensus 140 ~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd 179 (512)
+++...+..|...|.++.|.+.+ .++++++.|+.+++|+
T Consensus 2 ~~~~~~~~~~~~~i~~~~~~~~~-~~~~~~~~d~~~~~~~ 40 (40)
T smart00320 2 GELLKTLKGHTGPVTSVAFSPDG-KYLASASDDGTIKLWD 40 (40)
T ss_pred cEEEEEEEecCCceeEEEECCCC-CEEEEecCCCeEEEcC
Confidence 34556677788999999999987 8999999999999996
No 368
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=97.40 E-value=0.12 Score=48.69 Aligned_cols=94 Identities=13% Similarity=0.120 Sum_probs=60.2
Q ss_pred cCCCcEEEEeeCCCcEEE---EECCCCCCccccccccccccceeccccC-CCcEEEEEEec-----------CCCEEEEE
Q 010390 62 SKNSHIFAVSDEDGYVSL---FDSRRKLPSFACHRENAEKARISDWVAH-QNAIFDLCWIK-----------EDTNILTA 126 (512)
Q Consensus 62 s~~~~~latg~~dg~i~i---wd~~~~~~~~~~~~~~~~~~~~~~~~~h-~~~V~~l~~s~-----------~~~~l~s~ 126 (512)
+|++++||.+..+..+.+ |+..........+ ...-...+..- .+.|+++.|-| |...++.|
T Consensus 10 s~~~d~laiA~~~r~vil~~~w~~~~~~~~~~~~----~~~~~g~l~~~~~e~ITsi~clpl~s~~~s~~~~dw~~I~VG 85 (415)
T PF14655_consen 10 SPDGDLLAIARGQRLVILTSKWDSSRKGENENTY----SISWSGPLDDEPGECITSILCLPLSSQKRSTGGPDWTCIAVG 85 (415)
T ss_pred cCCCCEEEEEcCCEEEEEEeeccccccCCCCCeE----EEEeeeeccCCCCCEEEEEEEEEeecccccCCCCCcEEEEEE
Confidence 999999999987777666 6442221100000 00001111111 15788888766 24678899
Q ss_pred eCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeC
Q 010390 127 SGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHP 160 (512)
Q Consensus 127 ~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~ 160 (512)
..+|.|++|.. +|..+..-.-|..+|..|.+..
T Consensus 86 ~ssG~vrfyte-~G~LL~~Q~~h~~pV~~ik~~~ 118 (415)
T PF14655_consen 86 TSSGYVRFYTE-NGVLLLSQLLHEEPVLKIKCRS 118 (415)
T ss_pred ecccEEEEEec-cchHHHHHhcCccceEEEEecc
Confidence 99999999984 7777666666889999998753
No 369
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.35 E-value=0.0045 Score=62.77 Aligned_cols=103 Identities=18% Similarity=0.344 Sum_probs=77.1
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
-+..+|.|+..|.|...|...... +...-..-.++|++++|+.+|..++.|-.+|.|.+||...++..
T Consensus 98 ~~~~ivi~Ts~ghvl~~d~~~nL~------------~~~~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l 165 (1206)
T KOG2079|consen 98 VVVPIVIGTSHGHVLLSDMTGNLG------------PLHQNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKIL 165 (1206)
T ss_pred eeeeEEEEcCchhhhhhhhhcccc------------hhhcCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcce
Confidence 456789999999999998765311 11222234689999999999999999999999999999999998
Q ss_pred ecccCcCCCEEEEE---eeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 144 GALMGHTGSIKSLC---SHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 144 ~~~~~h~~~v~~l~---~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
+.+..|..+++++- +..++ ..++++...|. +|.+.
T Consensus 166 ~~i~e~~ap~t~vi~v~~t~~n-S~llt~D~~Gs--f~~lv 203 (1206)
T KOG2079|consen 166 KVITEHGAPVTGVIFVGRTSQN-SKLLTSDTGGS--FWKLV 203 (1206)
T ss_pred eeeeecCCccceEEEEEEeCCC-cEEEEccCCCc--eEEEE
Confidence 88877766665554 34444 56888777776 66654
No 370
>PF08553 VID27: VID27 cytoplasmic protein; InterPro: IPR013863 This entry represents fungal and plant proteins and contains many hypothetical proteins. Vid27p is a cytoplasmic protein of unknown function, possibly regulates import of fructose-1,6-bisphosphatase into Vacuolar Import and Degradation (Vid) vesicles and is not essential for proteasome-dependent degradation of fructose-1,6-bisphosphatase (FBPase) [, ].
Probab=97.31 E-value=0.0055 Score=62.00 Aligned_cols=149 Identities=9% Similarity=0.029 Sum_probs=91.3
Q ss_pred cCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccccc-CeeEEEeCC-----CCCEEEEEecCCeEEEEEcc
Q 010390 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLH-GISSLSQDS-----NGVFLTASCMDHRIYLYNVL 304 (512)
Q Consensus 231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~-~i~~~~~~~-----~~~~l~~~~~dg~i~i~d~~ 304 (512)
+...++........|+-.|+..++.+..- ..+.. +|..++-.. +....++|-.++.+..||.+
T Consensus 492 d~~mil~~~~~~~~ly~mDLe~GKVV~eW-----------~~~~~~~v~~~~p~~K~aqlt~e~tflGls~n~lfriDpR 560 (794)
T PF08553_consen 492 DRNMILLDPNNPNKLYKMDLERGKVVEEW-----------KVHDDIPVVDIAPDSKFAQLTNEQTFLGLSDNSLFRIDPR 560 (794)
T ss_pred ccceEeecCCCCCceEEEecCCCcEEEEe-----------ecCCCcceeEecccccccccCCCceEEEECCCceEEeccC
Confidence 33444443345578888899988877532 22222 244433321 13356677789999999987
Q ss_pred cCCCCceE-eeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390 305 QLDKGPIQ-HFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 305 ~~~~~~~~-~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 383 (512)
-.....+. ............|++-+.+| +||+|+.+|.||+||--. ......+.+-..+|.+|..+.|| ++|++.+
T Consensus 561 ~~~~k~v~~~~k~Y~~~~~Fs~~aTt~~G-~iavgs~~G~IRLyd~~g-~~AKT~lp~lG~pI~~iDvt~DG-kwilaTc 637 (794)
T PF08553_consen 561 LSGNKLVDSQSKQYSSKNNFSCFATTEDG-YIAVGSNKGDIRLYDRLG-KRAKTALPGLGDPIIGIDVTADG-KWILATC 637 (794)
T ss_pred CCCCceeeccccccccCCCceEEEecCCc-eEEEEeCCCcEEeecccc-hhhhhcCCCCCCCeeEEEecCCC-cEEEEee
Confidence 54322221 11111222334556555554 789999999999999543 33345566778999999999999 5655555
Q ss_pred CCCcEEEEeCC
Q 010390 384 DDYTVRLWSLE 394 (512)
Q Consensus 384 ~dg~i~vwd~~ 394 (512)
. ..|.+++..
T Consensus 638 ~-tyLlLi~t~ 647 (794)
T PF08553_consen 638 K-TYLLLIDTL 647 (794)
T ss_pred c-ceEEEEEEe
Confidence 4 457777753
No 371
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.27 E-value=0.019 Score=49.50 Aligned_cols=199 Identities=16% Similarity=0.201 Sum_probs=110.3
Q ss_pred ecCCCcEEEEee-----CCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC------
Q 010390 61 TSKNSHIFAVSD-----EDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD------ 129 (512)
Q Consensus 61 ~s~~~~~latg~-----~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------ 129 (512)
|||||.+|...- ..|.|-|||...+. ..+.++..|.-.-..+.|.+||+.|+.+...
T Consensus 121 fs~dG~~LYATEndfd~~rGViGvYd~r~~f------------qrvgE~~t~GiGpHev~lm~DGrtlvvanGGIethpd 188 (366)
T COG3490 121 FSPDGRLLYATENDFDPNRGVIGVYDAREGF------------QRVGEFSTHGIGPHEVTLMADGRTLVVANGGIETHPD 188 (366)
T ss_pred cCCCCcEEEeecCCCCCCCceEEEEeccccc------------ceecccccCCcCcceeEEecCCcEEEEeCCceecccc
Confidence 599999988763 34779999987542 4477788888888999999999999876430
Q ss_pred ------------CcEEEEeCCCCeeeecc--c--CcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccc
Q 010390 130 ------------QTIKIWDAEKKKCTGAL--M--GHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAES 193 (512)
Q Consensus 130 ------------g~i~iwd~~~~~~~~~~--~--~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~ 193 (512)
-++.+.|..+|+.+... . .+.-.|..++.-+++ ..++.+-..|. .......
T Consensus 189 fgR~~lNldsMePSlvlld~atG~liekh~Lp~~l~~lSiRHld~g~dg-tvwfgcQy~G~-------~~d~ppL----- 255 (366)
T COG3490 189 FGRTELNLDSMEPSLVLLDAATGNLIEKHTLPASLRQLSIRHLDIGRDG-TVWFGCQYRGP-------RNDLPPL----- 255 (366)
T ss_pred cCccccchhhcCccEEEEeccccchhhhccCchhhhhcceeeeeeCCCC-cEEEEEEeeCC-------CccCCcc-----
Confidence 12233343444433221 1 233345556665554 33333322211 0000000
Q ss_pred eeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcccccccccc
Q 010390 194 FVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETR 273 (512)
Q Consensus 194 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~ 273 (512)
...+.++..+................|-+++.+.+...++.++-..+...+||..++........+
T Consensus 256 ---vg~~~~g~~l~~~~~pee~~~~~anYigsiA~n~~~glV~lTSP~GN~~vi~da~tG~vv~~a~l~----------- 321 (366)
T COG3490 256 ---VGHFRKGEPLEFLDLPEEQTAAFANYIGSIAANRRDGLVALTSPRGNRAVIWDAATGAVVSEAALP----------- 321 (366)
T ss_pred ---eeeccCCCcCcccCCCHHHHHHHHhhhhheeecccCCeEEEecCCCCeEEEEEcCCCcEEeccccc-----------
Confidence 000000111111111111223344578888988877777777766778899999999876542211
Q ss_pred ccCeeEEEeCCCCCEEEEEecCCeEEEEE
Q 010390 274 LHGISSLSQDSNGVFLTASCMDHRIYLYN 302 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d 302 (512)
....++. ...-+++.+.+|.+..+.
T Consensus 322 --daaGva~--~~~gf~vssg~G~~~~~s 346 (366)
T COG3490 322 --DAAGVAA--AKGGFAVSSGQGRIIFYS 346 (366)
T ss_pred --cccccee--ccCceEEecCCceEEecc
Confidence 1222333 333466677788888775
No 372
>PF02897 Peptidase_S9_N: Prolyl oligopeptidase, N-terminal beta-propeller domain; InterPro: IPR004106 In the MEROPS database peptidases and peptidase homologues are grouped into clans and families. Clans are groups of families for which there is evidence of common ancestry based on a common structural fold: Each clan is identified with two letters, the first representing the catalytic type of the families included in the clan (with the letter 'P' being used for a clan containing families of more than one of the catalytic types serine, threonine and cysteine). Some families cannot yet be assigned to clans, and when a formal assignment is required, such a family is described as belonging to clan A-, C-, M-, N-, S-, T- or U-, according to the catalytic type. Some clans are divided into subclans because there is evidence of a very ancient divergence within the clan, for example MA(E), the gluzincins, and MA(M), the metzincins. Peptidase families are grouped by their catalytic type, the first character representing the catalytic type: A, aspartic; C, cysteine; G, glutamic acid; M, metallo; N, asparagine; S, serine; T, threonine; and U, unknown. The serine, threonine and cysteine peptidases utilise the amino acid as a nucleophile and form an acyl intermediate - these peptidases can also readily act as transferases. In the case of aspartic, glutamic and metallopeptidases, the nucleophile is an activated water molecule. In the case of the asparagine endopeptidases, the nucleophile is asparagine and all are self-processing endopeptidases. In many instances the structural protein fold that characterises the clan or family may have lost its catalytic activity, yet retain its function in protein recognition and binding. Proteolytic enzymes that exploit serine in their catalytic activity are ubiquitous, being found in viruses, bacteria and eukaryotes []. They include a wide range of peptidase activity, including exopeptidase, endopeptidase, oligopeptidase and omega-peptidase activity. Over 20 families (denoted S1 - S66) of serine protease have been identified, these being grouped into clans on the basis of structural similarity and other functional evidence []. Structures are known for members of the clans and the structures indicate that some appear to be totally unrelated, suggesting different evolutionary origins for the serine peptidases []. Not withstanding their different evolutionary origins, there are similarities in the reaction mechanisms of several peptidases. Chymotrypsin, subtilisin and carboxypeptidase C have a catalytic triad of serine, aspartate and histidine in common: serine acts as a nucleophile, aspartate as an electrophile, and histidine as a base []. The geometric orientations of the catalytic residues are similar between families, despite different protein folds []. The linear arrangements of the catalytic residues commonly reflect clan relationships. For example the catalytic triad in the chymotrypsin clan (PA) is ordered HDS, but is ordered DHS in the subtilisin clan (SB) and SDH in the carboxypeptidase clan (SC) [, ]. This entry represents the beta-propeller domain found at the N-terminal of prolyl oligopeptidase, including acylamino-acid-releasing enzyme (also known as acylaminoacyl peptidase), which belong to the MEROPS peptidase family S9 (clan SC), subfamily S9A. The prolyl oligopeptidase family consist of a number of evolutionary related peptidases whose catalytic activity seems to be provided by a charge relay system similar to that of the trypsin family of serine proteases, but which evolved by independent convergent evolution. The N-terminal domain of prolyl oligopeptidases form an unusual 7-bladed beta-propeller consisting of seven 4-stranded beta-sheet motifs. Prolyl oligopeptidase is a large cytosolic enzyme involved in the maturation and degradation of peptide hormones and neuropeptides, which relate to the induction of amnesia. The enzyme contains a peptidase domain, where its catalytic triad (Ser554, His680, Asp641) is covered by the central tunnel of the N-terminal beta-propeller domain. In this way, large structured peptides are excluded from the active site, thereby protecting larger peptides and proteins from proteolysis in the cytosol []. The protein fold of the peptidase domain for members of this family resembles that of serine carboxypeptidase D, the type example of clan SC. Mammalian acylaminoacyl peptidase is an exopeptidase that is a member of the same prolyl oligopeptidase family of serine peptidases. This enzyme removes acylated amino acid residues from the N terminus of oligopeptides [].; GO: 0004252 serine-type endopeptidase activity, 0006508 proteolysis; PDB: 2BKL_B 3DDU_A 1YR2_A 2XE4_A 1VZ3_A 3EQ9_A 1O6F_A 3EQ7_A 4AN0_A 1UOP_A ....
Probab=97.15 E-value=0.27 Score=47.52 Aligned_cols=117 Identities=11% Similarity=0.097 Sum_probs=67.6
Q ss_pred cceEEEEEecCCCcEEEEe-eCCC----cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 53 PLAVSFCKTSKNSHIFAVS-DEDG----YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 53 v~~v~~~~~s~~~~~latg-~~dg----~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
...+....+||||++||.+ +..| .|+++|+++++... ..+.. ..-..+.|.++++.|+...
T Consensus 123 ~~~~~~~~~Spdg~~la~~~s~~G~e~~~l~v~Dl~tg~~l~------------d~i~~--~~~~~~~W~~d~~~~~y~~ 188 (414)
T PF02897_consen 123 YVSLGGFSVSPDGKRLAYSLSDGGSEWYTLRVFDLETGKFLP------------DGIEN--PKFSSVSWSDDGKGFFYTR 188 (414)
T ss_dssp -EEEEEEEETTTSSEEEEEEEETTSSEEEEEEEETTTTEEEE------------EEEEE--EESEEEEECTTSSEEEEEE
T ss_pred eEEeeeeeECCCCCEEEEEecCCCCceEEEEEEECCCCcCcC------------Ccccc--cccceEEEeCCCCEEEEEE
Confidence 4555566679999999976 3333 49999998874310 01111 1112399999988887554
Q ss_pred CCC-----------cEEEEeCCCCeee--ecccCcCCC--EEEEEeeCCCCCeEEEEeCCC---cEEEEeCCCC
Q 010390 128 GDQ-----------TIKIWDAEKKKCT--GALMGHTGS--IKSLCSHPTNSDILVSGSRDG---SFAIWDLRCK 183 (512)
Q Consensus 128 ~dg-----------~i~iwd~~~~~~~--~~~~~h~~~--v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~ 183 (512)
.+. .|+.|.+.+...- ..+...... ...+..++++..+++...... .+.+.|+...
T Consensus 189 ~~~~~~~~~~~~~~~v~~~~~gt~~~~d~lvfe~~~~~~~~~~~~~s~d~~~l~i~~~~~~~~s~v~~~d~~~~ 262 (414)
T PF02897_consen 189 FDEDQRTSDSGYPRQVYRHKLGTPQSEDELVFEEPDEPFWFVSVSRSKDGRYLFISSSSGTSESEVYLLDLDDG 262 (414)
T ss_dssp CSTTTSS-CCGCCEEEEEEETTS-GGG-EEEEC-TTCTTSEEEEEE-TTSSEEEEEEESSSSEEEEEEEECCCT
T ss_pred eCcccccccCCCCcEEEEEECCCChHhCeeEEeecCCCcEEEEEEecCcccEEEEEEEccccCCeEEEEecccc
Confidence 333 3788888776432 333333322 567888988844444444433 4677777653
No 373
>KOG4649 consensus PQQ (pyrrolo-quinoline quinone) repeat protein [Secondary metabolites biosynthesis, transport and catabolism]
Probab=97.11 E-value=0.14 Score=43.67 Aligned_cols=106 Identities=10% Similarity=0.039 Sum_probs=71.1
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTG 144 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~ 144 (512)
..+++.|+..+.+.--|.+++..- -. .--...|.+-+.- -|++++.|...|.+++.+.++|+...
T Consensus 23 kT~v~igSHs~~~~avd~~sG~~~------------We--~ilg~RiE~sa~v-vgdfVV~GCy~g~lYfl~~~tGs~~w 87 (354)
T KOG4649|consen 23 KTLVVIGSHSGIVIAVDPQSGNLI------------WE--AILGVRIECSAIV-VGDFVVLGCYSGGLYFLCVKTGSQIW 87 (354)
T ss_pred ceEEEEecCCceEEEecCCCCcEE------------ee--hhhCceeeeeeEE-ECCEEEEEEccCcEEEEEecchhhee
Confidence 356777777887777777766321 00 1112333333322 47789999999999999999998877
Q ss_pred cccCcCCCEEE-EEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390 145 ALMGHTGSIKS-LCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK 187 (512)
Q Consensus 145 ~~~~h~~~v~~-l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 187 (512)
.+.... .|.+ ....+++ .++..|+.|++....|.++.....
T Consensus 88 ~f~~~~-~vk~~a~~d~~~-glIycgshd~~~yalD~~~~~cVy 129 (354)
T KOG4649|consen 88 NFVILE-TVKVRAQCDFDG-GLIYCGSHDGNFYALDPKTYGCVY 129 (354)
T ss_pred eeeehh-hhccceEEcCCC-ceEEEecCCCcEEEecccccceEE
Confidence 765332 3322 2344555 899999999999999998765443
No 374
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=97.04 E-value=0.099 Score=49.30 Aligned_cols=144 Identities=16% Similarity=0.188 Sum_probs=90.6
Q ss_pred CCCcEEEE-eeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCC--E-----EEEEeCCCcEEE
Q 010390 63 KNSHIFAV-SDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDT--N-----ILTASGDQTIKI 134 (512)
Q Consensus 63 ~~~~~lat-g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~--~-----l~s~~~dg~i~i 134 (512)
.+.++|.. +.....++--|++.++ .+..++-|.. |+-+.+.|+.+ . -+.|-.|..|.-
T Consensus 343 ~dsnlil~~~~~~~~l~klDIE~GK-------------IVeEWk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~vfr 408 (644)
T KOG2395|consen 343 ADSNLILMDGGEQDKLYKLDIERGK-------------IVEEWKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSVFR 408 (644)
T ss_pred cccceEeeCCCCcCcceeeecccce-------------eeeEeeccCC-cceeeccCCcchhcccccccEEeecCCceEE
Confidence 34444333 4444455556666553 3677777766 77778887543 2 234667888999
Q ss_pred EeCCCC-e-eeecccCcC----CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 135 WDAEKK-K-CTGALMGHT----GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 135 wd~~~~-~-~~~~~~~h~----~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
||.+-. . .+...++|. ....|.+-.. .-+++.|+.+|.|++||-- +...+
T Consensus 409 iDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT~--sG~IvvgS~~GdIRLYdri-~~~AK--------------------- 464 (644)
T KOG2395|consen 409 IDPRVQGKNKLAVVQSKQYSTKNNFSCFATTE--SGYIVVGSLKGDIRLYDRI-GRRAK--------------------- 464 (644)
T ss_pred ecccccCcceeeeeeccccccccccceeeecC--CceEEEeecCCcEEeehhh-hhhhh---------------------
Confidence 998632 1 122222222 2344544443 3589999999999999963 22111
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~ 251 (512)
..+.+...+|..|..+.+|+++++++ +..+.+.++.
T Consensus 465 -----TAlPgLG~~I~hVdvtadGKwil~Tc--~tyLlLi~t~ 500 (644)
T KOG2395|consen 465 -----TALPGLGDAIKHVDVTADGKWILATC--KTYLLLIDTL 500 (644)
T ss_pred -----hcccccCCceeeEEeeccCcEEEEec--ccEEEEEEEe
Confidence 13445667899999999999999865 7778777765
No 375
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=97.04 E-value=0.12 Score=47.03 Aligned_cols=200 Identities=9% Similarity=0.034 Sum_probs=108.2
Q ss_pred EeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEE
Q 010390 157 CSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIA 236 (512)
Q Consensus 157 ~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~ 236 (512)
.|.++...++.+--..+.|.-|+..++.... ......+.++.....+..|+
T Consensus 31 ~w~~~~~~L~w~DI~~~~i~r~~~~~g~~~~-----------------------------~~~p~~~~~~~~~d~~g~Lv 81 (307)
T COG3386 31 VWDPDRGALLWVDILGGRIHRLDPETGKKRV-----------------------------FPSPGGFSSGALIDAGGRLI 81 (307)
T ss_pred cCcCCCCEEEEEeCCCCeEEEecCCcCceEE-----------------------------EECCCCcccceeecCCCeEE
Confidence 4666664466666667778888776443211 11223445555555555666
Q ss_pred EEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEec-----------CCeEEEEEccc
Q 010390 237 TASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCM-----------DHRIYLYNVLQ 305 (512)
Q Consensus 237 ~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~-----------dg~i~i~d~~~ 305 (512)
++ +..+.+++.+++......... .........+.....|+|.+.+.... -|.++.+|..
T Consensus 82 ~~---~~g~~~~~~~~~~~~t~~~~~------~~~~~~~r~ND~~v~pdG~~wfgt~~~~~~~~~~~~~~G~lyr~~p~- 151 (307)
T COG3386 82 AC---EHGVRLLDPDTGGKITLLAEP------EDGLPLNRPNDGVVDPDGRIWFGDMGYFDLGKSEERPTGSLYRVDPD- 151 (307)
T ss_pred EE---ccccEEEeccCCceeEEeccc------cCCCCcCCCCceeEcCCCCEEEeCCCccccCccccCCcceEEEEcCC-
Confidence 53 445677777544442111110 11122244667888889887665444 1334444421
Q ss_pred CCCCceEeeeeceeceeEEEEEECCCCCEEEEecC-CCCEEEEecCC--CC----CCCceeccccCCeEEEEeCCCCCCe
Q 010390 306 LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSS-DGNAYVWQVNK--PQ----ADPIKLKSHDGEVTAVNWCPNEAGK 378 (512)
Q Consensus 306 ~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~-dg~i~iw~~~~--~~----~~~~~~~~h~~~v~~v~~~~~~~~~ 378 (512)
.........+ -.....++||||++.|+.+.. .+.|+-|++.. .. ..........+..-.++...+| .+
T Consensus 152 --g~~~~l~~~~--~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~~~~~~~~~~~G~PDG~~vDadG-~l 226 (307)
T COG3386 152 --GGVVRLLDDD--LTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGRRGFVDFDEEPGLPDGMAVDADG-NL 226 (307)
T ss_pred --CCEEEeecCc--EEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCcceEEEccCCCCCCCceEEeCCC-CE
Confidence 1122222221 122345899999988766654 47788887763 11 1111222234566667777777 56
Q ss_pred EEEEeCCC-cEEEEeCCCCccccc
Q 010390 379 IVTSSDDY-TVRLWSLENSRCSSM 401 (512)
Q Consensus 379 l~s~~~dg-~i~vwd~~~~~~~~~ 401 (512)
.+++..+| .|.+|+.+ |+.+..
T Consensus 227 w~~a~~~g~~v~~~~pd-G~l~~~ 249 (307)
T COG3386 227 WVAAVWGGGRVVRFNPD-GKLLGE 249 (307)
T ss_pred EEecccCCceEEEECCC-CcEEEE
Confidence 65554444 89999998 666554
No 376
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=97.03 E-value=0.0018 Score=53.75 Aligned_cols=140 Identities=14% Similarity=0.115 Sum_probs=74.1
Q ss_pred eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeece
Q 010390 239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCR 318 (512)
Q Consensus 239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~ 318 (512)
.+.+|.|.-++++.-+..... ...+... ...-.-+.-+++|+.+|.|.+|+...... ........
T Consensus 36 ~sa~~~v~~~~~~k~k~s~rs----------e~~~~e~---~~v~~~~~~~~vG~~dg~v~~~n~n~~g~--~~d~~~s~ 100 (238)
T KOG2444|consen 36 TSADGLVRERKVRKHKESCRS----------ERFIDEG---QRVVTASAKLMVGTSDGAVYVFNWNLEGA--HSDRVCSG 100 (238)
T ss_pred ccCCcccccchhhhhhhhhhh----------hhhhhcc---eeecccCceEEeecccceEEEecCCccch--HHHhhhcc
Confidence 346888888887754433221 1111111 12222355799999999999999752111 11111111
Q ss_pred eceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecccc-CCeEEEEeCCCCCCeEEEE--eCCCcEEEEeCCC
Q 010390 319 IESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHD-GEVTAVNWCPNEAGKIVTS--SDDYTVRLWSLEN 395 (512)
Q Consensus 319 ~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~-~~v~~v~~~~~~~~~l~s~--~~dg~i~vwd~~~ 395 (512)
.+.....+.--.++.+.++++.||.|+.|++.-.+. ......|. .++.....+..+ ..++.+ |.|..++.|++..
T Consensus 101 ~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~-~g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 101 EESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKV-LGYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred cccceeccccccccceeEEeccCCceeeeccccCce-eeeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 112122233334566889999999999999876654 23444455 333333333333 344444 5555555555543
No 377
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=97.02 E-value=0.16 Score=44.35 Aligned_cols=178 Identities=11% Similarity=0.051 Sum_probs=101.4
Q ss_pred ccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEE
Q 010390 146 LMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITS 225 (512)
Q Consensus 146 ~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~ 225 (512)
+.+-...|.++.|+|+. +.|++......-.+|=..+++.+...... .-.....
T Consensus 81 i~g~~~nvS~LTynp~~-rtLFav~n~p~~iVElt~~GdlirtiPL~--------------------------g~~DpE~ 133 (316)
T COG3204 81 ILGETANVSSLTYNPDT-RTLFAVTNKPAAIVELTKEGDLIRTIPLT--------------------------GFSDPET 133 (316)
T ss_pred cccccccccceeeCCCc-ceEEEecCCCceEEEEecCCceEEEeccc--------------------------ccCChhH
Confidence 44555669999999998 66666666666666654445443322111 1224556
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
+.|..++.+.++ -..++.+.++.+.............- +.........+...++|+|....|+.+-.-+-+.||.+..
T Consensus 134 Ieyig~n~fvi~-dER~~~l~~~~vd~~t~~~~~~~~~i-~L~~~~k~N~GfEGlA~d~~~~~l~~aKEr~P~~I~~~~~ 211 (316)
T COG3204 134 IEYIGGNQFVIV-DERDRALYLFTVDADTTVISAKVQKI-PLGTTNKKNKGFEGLAWDPVDHRLFVAKERNPIGIFEVTQ 211 (316)
T ss_pred eEEecCCEEEEE-ehhcceEEEEEEcCCccEEeccceEE-eccccCCCCcCceeeecCCCCceEEEEEccCCcEEEEEec
Confidence 777777766665 55778888887765543332221100 0001222256788999999999999998877777777653
Q ss_pred CCCCceEeee-ece-----eceeEEEEEECCC-CCEEEEecCCCCEEEEecCCC
Q 010390 306 LDKGPIQHFS-GCR-----IESFYVKSEICPN-ASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 306 ~~~~~~~~~~-~~~-----~~~~~~~~~~s~~-~~~l~~g~~dg~i~iw~~~~~ 352 (512)
.......... ... .-..+..+.|++. +.+|+-+.+++.+.-.|....
T Consensus 212 ~~~~l~~~~~~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G~ 265 (316)
T COG3204 212 SPSSLSVHASLDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSGE 265 (316)
T ss_pred CCcccccccccCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCCC
Confidence 3211111110 000 0112345667764 556666666777776666543
No 378
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.99 E-value=0.21 Score=50.09 Aligned_cols=156 Identities=20% Similarity=0.168 Sum_probs=78.0
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
....-.|+|+|..+.+....+..+++.+-.....+.......... .. .....|..+.|+|||..++... +|.|++-
T Consensus 398 ~~t~PsWspDG~~lw~v~dg~~~~~v~~~~~~gql~~~~vd~ge~--~~-~~~g~Issl~wSpDG~RiA~i~-~g~v~Va 473 (591)
T PRK13616 398 SLTRPSWSLDADAVWVVVDGNTVVRVIRDPATGQLARTPVDASAV--AS-RVPGPISELQLSRDGVRAAMII-GGKVYLA 473 (591)
T ss_pred CCCCceECCCCCceEEEecCcceEEEeccCCCceEEEEeccCchh--hh-ccCCCcCeEEECCCCCEEEEEE-CCEEEEE
Confidence 367778999988777654211223333221111111000000000 01 2345699999999999888765 5788774
Q ss_pred EcccCCCCceEe-----eeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceecc--ccCCeEEEEeCCC
Q 010390 302 NVLQLDKGPIQH-----FSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKS--HDGEVTAVNWCPN 374 (512)
Q Consensus 302 d~~~~~~~~~~~-----~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~--h~~~v~~v~~~~~ 374 (512)
-+.......... +. .........+.|..++.++ ++..++...+|.+.-.......+.. ....+.+|+=++.
T Consensus 474 ~Vvr~~~G~~~l~~~~~l~-~~l~~~~~~l~W~~~~~L~-V~~~~~~~~v~~v~vDG~~~~~~~~~n~~~~v~~vaa~~~ 551 (591)
T PRK13616 474 VVEQTEDGQYALTNPREVG-PGLGDTAVSLDWRTGDSLV-VGRSDPEHPVWYVNLDGSNSDALPSRNLSAPVVAVAASPS 551 (591)
T ss_pred EEEeCCCCceeecccEEee-cccCCccccceEecCCEEE-EEecCCCCceEEEecCCccccccCCCCccCceEEEecCCc
Confidence 433322222111 11 1112224668899999865 4444444445544322221112122 2567777877762
Q ss_pred CCCeEEEEeCCC
Q 010390 375 EAGKIVTSSDDY 386 (512)
Q Consensus 375 ~~~~l~s~~~dg 386 (512)
.++....+|
T Consensus 552 ---~iyv~~~~g 560 (591)
T PRK13616 552 ---TVYVTDARA 560 (591)
T ss_pred ---eEEEEcCCc
Confidence 344555566
No 379
>PRK10115 protease 2; Provisional
Probab=96.96 E-value=0.59 Score=48.17 Aligned_cols=73 Identities=8% Similarity=-0.005 Sum_probs=46.5
Q ss_pred CcEEEEEEecCCCEEEEEeC-----CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC-----CcEEEE
Q 010390 109 NAIFDLCWIKEDTNILTASG-----DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD-----GSFAIW 178 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~-----dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d-----g~i~vw 178 (512)
-.+..+.|+||+++|+.+.. ...|++-|+.+++.+....... -..++|.+++..++++...+ ..|..+
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l~~~i~~~--~~~~~w~~D~~~~~y~~~~~~~~~~~~v~~h 204 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWYPELLDNV--EPSFVWANDSWTFYYVRKHPVTLLPYQVWRH 204 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCCCccccCc--ceEEEEeeCCCEEEEEEecCCCCCCCEEEEE
Confidence 45777899999999885432 2458899998886432222121 14589999885555554432 356667
Q ss_pred eCCCC
Q 010390 179 DLRCK 183 (512)
Q Consensus 179 d~~~~ 183 (512)
++.++
T Consensus 205 ~lgt~ 209 (686)
T PRK10115 205 TIGTP 209 (686)
T ss_pred ECCCC
Confidence 77655
No 380
>PRK13616 lipoprotein LpqB; Provisional
Probab=96.95 E-value=0.14 Score=51.18 Aligned_cols=102 Identities=8% Similarity=0.027 Sum_probs=59.7
Q ss_pred CcceEEEEEecCCCcEEEEee------CCC--cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSD------EDG--YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNI 123 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~------~dg--~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l 123 (512)
.+.+.+. ||||+.+|..- .|+ .|.+++.... ...+ ..+ ...+.-.|+|+|+.|
T Consensus 351 ~vsspai---SpdG~~vA~v~~~~~~~~d~~s~Lwv~~~gg~------------~~~l--t~g--~~~t~PsWspDG~~l 411 (591)
T PRK13616 351 NITSAAL---SRSGRQVAAVVTLGRGAPDPASSLWVGPLGGV------------AVQV--LEG--HSLTRPSWSLDADAV 411 (591)
T ss_pred CcccceE---CCCCCEEEEEEeecCCCCCcceEEEEEeCCCc------------ceee--ecC--CCCCCceECCCCCce
Confidence 3455556 99999887765 243 4444454221 0111 122 237888999998888
Q ss_pred EEEeCC------------CcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEE
Q 010390 124 LTASGD------------QTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAI 177 (512)
Q Consensus 124 ~s~~~d------------g~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~v 177 (512)
++.... +.+.+.++..++... ...+.|..+.|+|+| ..++... +|.|.+
T Consensus 412 w~v~dg~~~~~v~~~~~~gql~~~~vd~ge~~~---~~~g~Issl~wSpDG-~RiA~i~-~g~v~V 472 (591)
T PRK13616 412 WVVVDGNTVVRVIRDPATGQLARTPVDASAVAS---RVPGPISELQLSRDG-VRAAMII-GGKVYL 472 (591)
T ss_pred EEEecCcceEEEeccCCCceEEEEeccCchhhh---ccCCCcCeEEECCCC-CEEEEEE-CCEEEE
Confidence 776432 233333444443322 235679999999999 5444443 467766
No 381
>PF05694 SBP56: 56kDa selenium binding protein (SBP56); InterPro: IPR008826 This family consists of several eukaryotic selenium binding proteins as well as three sequences from archaea. The exact function of this protein is unknown although it is thought that SBP56 participates in late stages of intra-Golgi protein transport []. The Lotus japonicus homologue of SBP56, LjSBP is thought to have more than one physiological role and can be implicated in controlling the oxidation/reduction status of target proteins in vesicular Golgi transport [].; GO: 0008430 selenium binding; PDB: 2ECE_A.
Probab=96.91 E-value=0.37 Score=45.03 Aligned_cols=231 Identities=11% Similarity=0.120 Sum_probs=95.6
Q ss_pred CCCEEEEEe-CCCcEEEEeCCCC----eeeecccC---cC----CCEEEEEeeCCCCCeEEEEeCC------CcEEEEeC
Q 010390 119 EDTNILTAS-GDQTIKIWDAEKK----KCTGALMG---HT----GSIKSLCSHPTNSDILVSGSRD------GSFAIWDL 180 (512)
Q Consensus 119 ~~~~l~s~~-~dg~i~iwd~~~~----~~~~~~~~---h~----~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~ 180 (512)
+.++|+..+ ..+.|+|.|+.+. +..+.+.. +. ..-..+..-|++ .+++++-.| |.+.+.|-
T Consensus 86 ~Rr~Li~PgL~SsrIyviD~~~dPr~P~l~KvIe~~ev~~k~g~s~PHT~Hclp~G-~imIS~lGd~~G~g~Ggf~llD~ 164 (461)
T PF05694_consen 86 ERRYLILPGLRSSRIYVIDTKTDPRKPRLHKVIEPEEVFEKTGLSRPHTVHCLPDG-RIMISALGDADGNGPGGFVLLDG 164 (461)
T ss_dssp -S-EEEEEBTTT--EEEEE--S-TTS-EEEEEE-HHHHHHHH-EEEEEEEEE-SS---EEEEEEEETTS-S--EEEEE-T
T ss_pred cCCcEEeeeeccCcEEEEECCCCCCCCceEeeeCHHHHHhhcCCCCCceeeecCCc-cEEEEeccCCCCCCCCcEEEEcC
Confidence 456777655 6788999998743 33333322 11 122334445666 677766322 45666665
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEe-------------------ec
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATAS-------------------AV 241 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g-------------------~~ 241 (512)
++.+...... .-......-..+-|.|..+.++++. ..
T Consensus 165 ~tf~v~g~We------------------------~~~~~~~~gYDfw~qpr~nvMiSSeWg~P~~~~~Gf~~~d~~~~~y 220 (461)
T PF05694_consen 165 ETFEVKGRWE------------------------KDRGPQPFGYDFWYQPRHNVMISSEWGAPSMFEKGFNPEDLEAGKY 220 (461)
T ss_dssp TT--EEEE--------------------------SB-TT------EEEETTTTEEEE-B---HHHHTT---TTTHHHH-S
T ss_pred ccccccceec------------------------cCCCCCCCCCCeEEcCCCCEEEEeccCChhhcccCCChhHhhcccc
Confidence 5432211100 0011122345566667666666542 13
Q ss_pred CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC--CCCCEEEEEe-cCCeEEEEEc-ccCCC--CceEeee
Q 010390 242 NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD--SNGVFLTASC-MDHRIYLYNV-LQLDK--GPIQHFS 315 (512)
Q Consensus 242 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~-~dg~i~i~d~-~~~~~--~~~~~~~ 315 (512)
...+.+||+.+.+...+...+. ...-...+.|. |+..+=++++ ...+|..|-- ....- ..+..+.
T Consensus 221 G~~l~vWD~~~r~~~Q~idLg~---------~g~~pLEvRflH~P~~~~gFvg~aLss~i~~~~k~~~g~W~a~kVi~ip 291 (461)
T PF05694_consen 221 GHSLHVWDWSTRKLLQTIDLGE---------EGQMPLEVRFLHDPDANYGFVGCALSSSIWRFYKDDDGEWAAEKVIDIP 291 (461)
T ss_dssp --EEEEEETTTTEEEEEEES-T---------TEEEEEEEEE-SSTT--EEEEEEE--EEEEEEEE-ETTEEEEEEEEEE-
T ss_pred cCeEEEEECCCCcEeeEEecCC---------CCCceEEEEecCCCCccceEEEEeccceEEEEEEcCCCCeeeeEEEECC
Confidence 5689999999988776653221 11224445554 4444444433 3445554432 22111 1122222
Q ss_pred ece---------------eceeEEEEEECCCCCEEEEec-CCCCEEEEecCCCCCCCceec---c---------------
Q 010390 316 GCR---------------IESFYVKSEICPNASHILSGS-SDGNAYVWQVNKPQADPIKLK---S--------------- 361 (512)
Q Consensus 316 ~~~---------------~~~~~~~~~~s~~~~~l~~g~-~dg~i~iw~~~~~~~~~~~~~---~--------------- 361 (512)
... ....++.+.+|.|.++|.... .+|.|+.||+.....+...-+ +
T Consensus 292 ~~~v~~~~lp~ml~~~~~~P~LitDI~iSlDDrfLYvs~W~~GdvrqYDISDP~~Pkl~gqv~lGG~~~~~~~~~v~g~~ 371 (461)
T PF05694_consen 292 AKKVEGWILPEMLKPFGAVPPLITDILISLDDRFLYVSNWLHGDVRQYDISDPFNPKLVGQVFLGGSIRKGDHPVVKGKR 371 (461)
T ss_dssp -EE--SS---GGGGGG-EE------EEE-TTS-EEEEEETTTTEEEEEE-SSTTS-EEEEEEE-BTTTT-B--TTS----
T ss_pred CcccCcccccccccccccCCCceEeEEEccCCCEEEEEcccCCcEEEEecCCCCCCcEEeEEEECcEeccCCCccccccc
Confidence 111 134578899999999996655 589999999998765432211 0
Q ss_pred ccCCeEEEEeCCCCCCeEEEEe
Q 010390 362 HDGEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 362 h~~~v~~v~~~~~~~~~l~s~~ 383 (512)
-.+...-|..|-||.++.+|.|
T Consensus 372 l~GgPqMvqlS~DGkRlYvTnS 393 (461)
T PF05694_consen 372 LRGGPQMVQLSLDGKRLYVTNS 393 (461)
T ss_dssp --S----EEE-TTSSEEEEE--
T ss_pred cCCCCCeEEEccCCeEEEEEee
Confidence 1223466778888844455544
No 382
>COG3386 Gluconolactonase [Carbohydrate transport and metabolism]
Probab=96.89 E-value=0.33 Score=44.16 Aligned_cols=204 Identities=10% Similarity=0.078 Sum_probs=104.8
Q ss_pred cCCCc-EEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCC
Q 010390 62 SKNSH-IFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKK 140 (512)
Q Consensus 62 s~~~~-~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~ 140 (512)
.++.. ++.+--..+.|.-|+..++. ...+ .+.+.+.++..-..+..|+++. .| +.+++.+++
T Consensus 33 ~~~~~~L~w~DI~~~~i~r~~~~~g~--------------~~~~-~~p~~~~~~~~~d~~g~Lv~~~-~g-~~~~~~~~~ 95 (307)
T COG3386 33 DPDRGALLWVDILGGRIHRLDPETGK--------------KRVF-PSPGGFSSGALIDAGGRLIACE-HG-VRLLDPDTG 95 (307)
T ss_pred cCCCCEEEEEeCCCCeEEEecCCcCc--------------eEEE-ECCCCcccceeecCCCeEEEEc-cc-cEEEeccCC
Confidence 55555 55555667788888876542 1222 2233445555544555666553 33 677887666
Q ss_pred eeeeccc----C-cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccccccccccee
Q 010390 141 KCTGALM----G-HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSR 215 (512)
Q Consensus 141 ~~~~~~~----~-h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 215 (512)
..+..+. + .....+.+...|+| .+.++... . ++ .......... .+ ....+.......
T Consensus 96 ~~~t~~~~~~~~~~~~r~ND~~v~pdG-~~wfgt~~-~----~~--~~~~~~~~~G--~l--------yr~~p~g~~~~l 157 (307)
T COG3386 96 GKITLLAEPEDGLPLNRPNDGVVDPDG-RIWFGDMG-Y----FD--LGKSEERPTG--SL--------YRVDPDGGVVRL 157 (307)
T ss_pred ceeEEeccccCCCCcCCCCceeEcCCC-CEEEeCCC-c----cc--cCccccCCcc--eE--------EEEcCCCCEEEe
Confidence 5432221 1 11345667777876 43333322 1 11 0000000000 00 000001111122
Q ss_pred cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecC
Q 010390 216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMD 295 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~d 295 (512)
...+-..-+.++|+||++.++.+-+..+.|.-|++.......... ..........+..-.++.+.+|.+.+++..+
T Consensus 158 ~~~~~~~~NGla~SpDg~tly~aDT~~~~i~r~~~d~~~g~~~~~----~~~~~~~~~~G~PDG~~vDadG~lw~~a~~~ 233 (307)
T COG3386 158 LDDDLTIPNGLAFSPDGKTLYVADTPANRIHRYDLDPATGPIGGR----RGFVDFDEEPGLPDGMAVDADGNLWVAAVWG 233 (307)
T ss_pred ecCcEEecCceEECCCCCEEEEEeCCCCeEEEEecCcccCccCCc----ceEEEccCCCCCCCceEEeCCCCEEEecccC
Confidence 223344568899999999999887777888888876311100000 0000122234556678888888877655555
Q ss_pred C-eEEEEEcc
Q 010390 296 H-RIYLYNVL 304 (512)
Q Consensus 296 g-~i~i~d~~ 304 (512)
| .|.+|+..
T Consensus 234 g~~v~~~~pd 243 (307)
T COG3386 234 GGRVVRFNPD 243 (307)
T ss_pred CceEEEECCC
Confidence 4 89999864
No 383
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.87 E-value=0.3 Score=48.89 Aligned_cols=231 Identities=11% Similarity=0.106 Sum_probs=114.3
Q ss_pred CCCcEEEEeeCCC------cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC------C
Q 010390 63 KNSHIFAVSDEDG------YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD------Q 130 (512)
Q Consensus 63 ~~~~~latg~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d------g 130 (512)
..+.+++.||.++ .+..||..++... ....+. +...-.+++.. ++...++||.| .
T Consensus 283 ~~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~-----------~~a~m~-~~r~~~~~~~~-~~~lYv~GG~~~~~~~l~ 349 (571)
T KOG4441|consen 283 VSGKLVAVGGYNRQGQSLRSVECYDPKTNEWS-----------SLAPMP-SPRCRVGVAVL-NGKLYVVGGYDSGSDRLS 349 (571)
T ss_pred CCCeEEEECCCCCCCcccceeEEecCCcCcEe-----------ecCCCC-cccccccEEEE-CCEEEEEccccCCCcccc
Confidence 3467888888774 5778887765321 122222 22223444444 56777888888 3
Q ss_pred cEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCCCc-----EEEEeCCCCCCCCCccccceeeecccccc
Q 010390 131 TIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRDGS-----FAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 131 ~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~-----i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
++..||..+++-.. .+....... +++.. ++.+.+.||.||. +-.||..+.+-....
T Consensus 350 ~ve~YD~~~~~W~~~a~M~~~R~~~-~v~~l--~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va-------------- 412 (571)
T KOG4441|consen 350 SVERYDPRTNQWTPVAPMNTKRSDF-GVAVL--DGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA-------------- 412 (571)
T ss_pred eEEEecCCCCceeccCCccCccccc-eeEEE--CCEEEEEeccccccccccEEEecCCCCcccccC--------------
Confidence 57788887765332 222221111 12222 3378899998864 556666654322211
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCC------eEEEEeccCccceecccCCCccccccccccccCe
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS------IVKFWDTRNLKAQITQAWPHAESSSAKETRLHGI 277 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg------~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i 277 (512)
.............-+..+.++|+.++ .+..||..+..-..... +.......
T Consensus 413 --------------~m~~~r~~~gv~~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~---------M~~~R~~~ 469 (571)
T KOG4441|consen 413 --------------PMLTRRSGHGVAVLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAP---------MNTRRSGF 469 (571)
T ss_pred --------------CCCcceeeeEEEEECCEEEEEcCcCCCccccceEEEEcCCCCceeecCC---------cccccccc
Confidence 11112233333333344444455443 46778887765433211 11111111
Q ss_pred eEEEeCCCCCEEEEEecCC-----eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCC-----EEEE
Q 010390 278 SSLSQDSNGVFLTASCMDH-----RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGN-----AYVW 347 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~dg-----~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~-----i~iw 347 (512)
. ++. -++.+.+.|+.|+ +|..||........+........... ...-++...++|+.||. |..|
T Consensus 470 g-~a~-~~~~iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g----~~~~~~~ly~vGG~~~~~~l~~ve~y 543 (571)
T KOG4441|consen 470 G-VAV-LNGKIYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVG----VVVLGGKLYAVGGFDGNNNLNTVECY 543 (571)
T ss_pred e-EEE-ECCEEEEECCccCCCccceEEEEcCCCCceeEcccCcccccccc----EEEECCEEEEEecccCccccceeEEc
Confidence 1 222 2567778888776 36778765543333221111111110 11134566778887763 5566
Q ss_pred ecCCC
Q 010390 348 QVNKP 352 (512)
Q Consensus 348 ~~~~~ 352 (512)
|..+.
T Consensus 544 dp~~d 548 (571)
T KOG4441|consen 544 DPETD 548 (571)
T ss_pred CCCCC
Confidence 55443
No 384
>KOG2395 consensus Protein involved in vacuole import and degradation [Intracellular trafficking, secretion, and vesicular transport]
Probab=96.86 E-value=0.016 Score=54.29 Aligned_cols=152 Identities=11% Similarity=0.031 Sum_probs=95.4
Q ss_pred EEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-------EEEEEecCCeE
Q 010390 226 VLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-------FLTASCMDHRI 298 (512)
Q Consensus 226 ~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-------~l~~~~~dg~i 298 (512)
+....+.+.++..+.....++-.|+..++.+.. ...+.. |.-+.+.|+.+ .-+.|-.++.|
T Consensus 339 mL~~~dsnlil~~~~~~~~l~klDIE~GKIVeE-----------Wk~~~d-i~mv~~t~d~K~~Ql~~e~TlvGLs~n~v 406 (644)
T KOG2395|consen 339 MLHRADSNLILMDGGEQDKLYKLDIERGKIVEE-----------WKFEDD-INMVDITPDFKFAQLTSEQTLVGLSDNSV 406 (644)
T ss_pred hhhccccceEeeCCCCcCcceeeecccceeeeE-----------eeccCC-cceeeccCCcchhcccccccEEeecCCce
Confidence 344456666777676677888889998887653 222222 66666666542 23456678999
Q ss_pred EEEEcccCCCCceEeeeecee--ceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCC
Q 010390 299 YLYNVLQLDKGPIQHFSGCRI--ESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEA 376 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~~--~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 376 (512)
.-||.+-.....+....++.. .....|.+-. ...+|++|+.+|.|++||- .+......+.+...+|..|..+.+|
T Consensus 407 friDpRv~~~~kl~~~q~kqy~~k~nFsc~aTT-~sG~IvvgS~~GdIRLYdr-i~~~AKTAlPgLG~~I~hVdvtadG- 483 (644)
T KOG2395|consen 407 FRIDPRVQGKNKLAVVQSKQYSTKNNFSCFATT-ESGYIVVGSLKGDIRLYDR-IGRRAKTALPGLGDAIKHVDVTADG- 483 (644)
T ss_pred EEecccccCcceeeeeeccccccccccceeeec-CCceEEEeecCCcEEeehh-hhhhhhhcccccCCceeeEEeeccC-
Confidence 999987433322222233221 1112233322 3458999999999999998 4444345677888999999999999
Q ss_pred CeEEEEeCCCcEEEEeC
Q 010390 377 GKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 377 ~~l~s~~~dg~i~vwd~ 393 (512)
.+|+..+. ..+.+-++
T Consensus 484 Kwil~Tc~-tyLlLi~t 499 (644)
T KOG2395|consen 484 KWILATCK-TYLLLIDT 499 (644)
T ss_pred cEEEEecc-cEEEEEEE
Confidence 55555443 45555554
No 385
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.83 E-value=0.0051 Score=37.59 Aligned_cols=34 Identities=9% Similarity=0.160 Sum_probs=30.0
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC 142 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~ 142 (512)
...|..++|+|..++||.+..+|.|.|+.+ +++.
T Consensus 11 ~~~v~~~~w~P~mdLiA~~t~~g~v~v~Rl-~~qr 44 (47)
T PF12894_consen 11 PSRVSCMSWCPTMDLIALGTEDGEVLVYRL-NWQR 44 (47)
T ss_pred CCcEEEEEECCCCCEEEEEECCCeEEEEEC-CCcC
Confidence 457999999999999999999999999998 5543
No 386
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.82 E-value=0.032 Score=53.27 Aligned_cols=161 Identities=9% Similarity=0.086 Sum_probs=95.1
Q ss_pred ccEEEEEEeecCCEEEEEee--cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCC----CCEEEEEec
Q 010390 221 MSITSVLYLKDEVSIATASA--VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSN----GVFLTASCM 294 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~--~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~----~~~l~~~~~ 294 (512)
.++..++|. ||+.++.+.- .+|.+++=|.. ..+.-..|..+.|.|- ...|++.-.
T Consensus 20 HPvhGlaWT-DGkqVvLT~L~l~~gE~kfGds~------------------viGqFEhV~GlsW~P~~~~~~paLLAVQH 80 (671)
T PF15390_consen 20 HPVHGLAWT-DGKQVVLTDLQLHNGEPKFGDSK------------------VIGQFEHVHGLSWAPPCTADTPALLAVQH 80 (671)
T ss_pred ccccceEec-CCCEEEEEeeeeeCCccccCCcc------------------EeeccceeeeeeecCcccCCCCceEEEec
Confidence 367888886 5555544331 23333332222 2223345889999884 334555567
Q ss_pred CCeEEEEEcccCC--C-CceEeeeec---eeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEE
Q 010390 295 DHRIYLYNVLQLD--K-GPIQHFSGC---RIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTA 368 (512)
Q Consensus 295 dg~i~i~d~~~~~--~-~~~~~~~~~---~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~ 368 (512)
...|.+|.+.... . +.+.....+ ........+.|+|....|++-.....-.++++......+..-..-.+.|.|
T Consensus 81 kkhVtVWqL~~s~~e~~K~l~sQtcEi~e~~pvLpQGCVWHPk~~iL~VLT~~dvSV~~sV~~d~srVkaDi~~~G~IhC 160 (671)
T PF15390_consen 81 KKHVTVWQLCPSTTERNKLLMSQTCEIREPFPVLPQGCVWHPKKAILTVLTARDVSVLPSVHCDSSRVKADIKTSGLIHC 160 (671)
T ss_pred cceEEEEEeccCccccccceeeeeeeccCCcccCCCcccccCCCceEEEEecCceeEeeeeeeCCceEEEeccCCceEEE
Confidence 8899999985221 1 111111111 111122347899999988776665555666766554433333345678999
Q ss_pred EEeCCCCCCeEEEEeCCCcEEEEeCCCCcccc
Q 010390 369 VNWCPNEAGKIVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 369 v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
.+|.+||++++++.+..=.-+|||-.......
T Consensus 161 ACWT~DG~RLVVAvGSsLHSyiWd~~qKtL~~ 192 (671)
T PF15390_consen 161 ACWTKDGQRLVVAVGSSLHSYIWDSAQKTLHR 192 (671)
T ss_pred EEecCcCCEEEEEeCCeEEEEEecCchhhhhh
Confidence 99999996666666776677899976654433
No 387
>PHA02713 hypothetical protein; Provisional
Probab=96.76 E-value=0.23 Score=49.76 Aligned_cols=68 Identities=3% Similarity=-0.031 Sum_probs=39.8
Q ss_pred CCCCEEEEecCC------CCEEEEecCC-CC-CCCceeccccCCeEEEEeCCCCCCeEEEEeCCC--cEEEEeCCCCccc
Q 010390 330 PNASHILSGSSD------GNAYVWQVNK-PQ-ADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDY--TVRLWSLENSRCS 399 (512)
Q Consensus 330 ~~~~~l~~g~~d------g~i~iw~~~~-~~-~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~ 399 (512)
-+++..+.|+.+ ..+..||..+ .+ .....+.........+.+ ++ .+.+.||.|| .+..||..+.+..
T Consensus 462 ~~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~~~~~~--~~-~iyv~Gg~~~~~~~e~yd~~~~~W~ 538 (557)
T PHA02713 462 HKDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSALHTILH--DN-TIMMLHCYESYMLQDTFNVYTYEWN 538 (557)
T ss_pred ECCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccceeEEE--CC-EEEEEeeecceeehhhcCccccccc
Confidence 346666777654 2367888876 32 212222222223333333 45 7899999888 6777888777655
Q ss_pred c
Q 010390 400 S 400 (512)
Q Consensus 400 ~ 400 (512)
.
T Consensus 539 ~ 539 (557)
T PHA02713 539 H 539 (557)
T ss_pred c
Confidence 4
No 388
>COG3490 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.73 E-value=0.1 Score=45.27 Aligned_cols=107 Identities=14% Similarity=0.222 Sum_probs=67.0
Q ss_pred eEEEEEecCCC-cEEEEeeCCCc-EEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC---
Q 010390 55 AVSFCKTSKNS-HIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD--- 129 (512)
Q Consensus 55 ~v~~~~~s~~~-~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d--- 129 (512)
.|.+ +|.- .-++.+-.-|+ ..++|.++...... .....-+.+.+|. .|||||.+|...-.|
T Consensus 72 gi~~---~p~~~ravafARrPGtf~~vfD~~~~~~pv~-----~~s~~~RHfyGHG------vfs~dG~~LYATEndfd~ 137 (366)
T COG3490 72 GIAF---HPALPRAVAFARRPGTFAMVFDPNGAQEPVT-----LVSQEGRHFYGHG------VFSPDGRLLYATENDFDP 137 (366)
T ss_pred Ceec---CCCCcceEEEEecCCceEEEECCCCCcCcEE-----EecccCceeeccc------ccCCCCcEEEeecCCCCC
Confidence 5666 4433 34555555554 56788776543110 0011123344553 689999999865443
Q ss_pred --CcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEE
Q 010390 130 --QTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 130 --g~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vw 178 (512)
|.|-|||...+ +.+.++..|.-.-..+.+.+|+ ..++.+. |-|..-
T Consensus 138 ~rGViGvYd~r~~fqrvgE~~t~GiGpHev~lm~DG-rtlvvan--GGIeth 186 (366)
T COG3490 138 NRGVIGVYDAREGFQRVGEFSTHGIGPHEVTLMADG-RTLVVAN--GGIETH 186 (366)
T ss_pred CCceEEEEecccccceecccccCCcCcceeEEecCC-cEEEEeC--Cceecc
Confidence 78999998755 5577788888788889999998 6665543 445444
No 389
>COG3204 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=96.72 E-value=0.37 Score=42.27 Aligned_cols=181 Identities=6% Similarity=0.095 Sum_probs=111.3
Q ss_pred ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 105 VAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 105 ~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
.+-...|.++.|+|+.+.|++......-.||=-.+|+.+.++.-. -....+|.+...+ ++.++--.++.+.++.+...
T Consensus 82 ~g~~~nvS~LTynp~~rtLFav~n~p~~iVElt~~GdlirtiPL~g~~DpE~Ieyig~n-~fvi~dER~~~l~~~~vd~~ 160 (316)
T COG3204 82 LGETANVSSLTYNPDTRTLFAVTNKPAAIVELTKEGDLIRTIPLTGFSDPETIEYIGGN-QFVIVDERDRALYLFTVDAD 160 (316)
T ss_pred ccccccccceeeCCCcceEEEecCCCceEEEEecCCceEEEecccccCChhHeEEecCC-EEEEEehhcceEEEEEEcCC
Confidence 445566999999999999998888887778877788888876421 2345567777655 66667677888888887755
Q ss_pred CCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCC
Q 010390 184 SSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPH 263 (512)
Q Consensus 184 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~ 263 (512)
.......... -........+.....++|.|.+..++++- +-.-+.||.+............
T Consensus 161 t~~~~~~~~~-----------------i~L~~~~k~N~GfEGlA~d~~~~~l~~aK-Er~P~~I~~~~~~~~~l~~~~~- 221 (316)
T COG3204 161 TTVISAKVQK-----------------IPLGTTNKKNKGFEGLAWDPVDHRLFVAK-ERNPIGIFEVTQSPSSLSVHAS- 221 (316)
T ss_pred ccEEeccceE-----------------EeccccCCCCcCceeeecCCCCceEEEEE-ccCCcEEEEEecCCcccccccc-
Confidence 3322211100 00111122255788999999999988865 5666777766633211111000
Q ss_pred ccccccccccccCeeEEEeCCC-CCEEEEEecCCeEEEEEccc
Q 010390 264 AESSSAKETRLHGISSLSQDSN-GVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 264 ~~~~~~~~~~~~~i~~~~~~~~-~~~l~~~~~dg~i~i~d~~~ 305 (512)
..+.....-....|.++.|++. +.+|+.+..++.+.-.|...
T Consensus 222 ~~~~~~~~~f~~DvSgl~~~~~~~~LLVLS~ESr~l~Evd~~G 264 (316)
T COG3204 222 LDPTADRDLFVLDVSGLEFNAITNSLLVLSDESRRLLEVDLSG 264 (316)
T ss_pred cCcccccceEeeccccceecCCCCcEEEEecCCceEEEEecCC
Confidence 0000011222345788888864 55666666777787788644
No 390
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=96.71 E-value=0.9 Score=46.65 Aligned_cols=295 Identities=11% Similarity=0.105 Sum_probs=158.7
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS 127 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~ 127 (512)
+-+.-+++|-+..+-.|..+|.++..||.+.-|-++.....+.. .+.-.--..++.--.|+..++.-+-+.
T Consensus 578 ~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~tg~lsd---------~Kk~~lGt~P~~Lr~f~sk~~t~vfa~ 648 (1096)
T KOG1897|consen 578 SGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDINTGQLSD---------RKKVTLGTQPISLRTFSSKSRTAVFAL 648 (1096)
T ss_pred CCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcccceEcc---------ccccccCCCCcEEEEEeeCCceEEEEe
Confidence 34455677777777778899999999999987765543221100 111111234555556665554444445
Q ss_pred CCCcEEEEeCCCCeeeecccCcCCCEEEEE-eeC-CCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 128 GDQTIKIWDAEKKKCTGALMGHTGSIKSLC-SHP-TNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 128 ~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~-~~~-~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
.|.-..+|.-+..-+...+.- ..+..++ |+. ..+..++++.. +.+++..++.-+.....
T Consensus 649 sdrP~viY~~n~kLv~spls~--kev~~~c~f~s~a~~d~l~~~~~-~~l~i~tid~iqkl~ir---------------- 709 (1096)
T KOG1897|consen 649 SDRPTVIYSSNGKLVYSPLSL--KEVNHMCPFNSDAYPDSLASANG-GALTIGTIDEIQKLHIR---------------- 709 (1096)
T ss_pred CCCCEEEEecCCcEEEeccch--HHhhhhcccccccCCceEEEecC-CceEEEEecchhhccee----------------
Confidence 566666776433222222211 1122111 222 22244555544 56777766643332211
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEee----------cC---CeEEEEeccCccceecccCCCccccccccc
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASA----------VN---SIVKFWDTRNLKAQITQAWPHAESSSAKET 272 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~----------~d---g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~ 272 (512)
. ..-......+++.+....+++.+. .. ..++++|-++.+......... ..
T Consensus 710 ---------t-vpl~~~prrI~~q~~sl~~~v~s~r~e~~~~~~~ee~~~s~l~vlD~nTf~vl~~hef~~-------~E 772 (1096)
T KOG1897|consen 710 ---------T-VPLGESPRRICYQESSLTFGVLSNRIESSAEYYGEEYEVSFLRVLDQNTFEVLSSHEFER-------NE 772 (1096)
T ss_pred ---------e-ecCCCChhheEecccceEEEEEecccccchhhcCCcceEEEEEEecCCceeEEeeccccc-------cc
Confidence 0 112223444555543333322210 01 246677777665544322111 11
Q ss_pred cccCeeEEEeCCC-CCEEEEEec----------CCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC
Q 010390 273 RLHGISSLSQDSN-GVFLTASCM----------DHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 273 ~~~~i~~~~~~~~-~~~l~~~~~----------dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
....+.+..|..| +.++++|.. .|.|.+|.+.. ...+.....+...+.+.++.. -+|++||.- +
T Consensus 773 ~~~Si~s~~~~~d~~t~~vVGT~~v~Pde~ep~~GRIivfe~~e--~~~L~~v~e~~v~Gav~aL~~-fngkllA~I--n 847 (1096)
T KOG1897|consen 773 TALSIISCKFTDDPNTYYVVGTGLVYPDENEPVNGRIIVFEFEE--LNSLELVAETVVKGAVYALVE-FNGKLLAGI--N 847 (1096)
T ss_pred eeeeeeeeeecCCCceEEEEEEEeeccCCCCcccceEEEEEEec--CCceeeeeeeeeccceeehhh-hCCeEEEec--C
Confidence 1123555668777 677777752 47888888765 334444444444443433322 246666544 5
Q ss_pred CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
..|++|+..+.+. +.....|..++..+...-.+ ..++.|.-=+.+.+-...
T Consensus 848 ~~vrLye~t~~~e-Lr~e~~~~~~~~aL~l~v~g-deI~VgDlm~Sitll~y~ 898 (1096)
T KOG1897|consen 848 QSVRLYEWTTERE-LRIECNISNPIIALDLQVKG-DEIAVGDLMRSITLLQYK 898 (1096)
T ss_pred cEEEEEEccccce-ehhhhcccCCeEEEEEEecC-cEEEEeeccceEEEEEEe
Confidence 6799999988755 34556677889999888888 789998877776664443
No 391
>PHA02713 hypothetical protein; Provisional
Probab=96.64 E-value=0.3 Score=48.92 Aligned_cols=66 Identities=8% Similarity=-0.034 Sum_probs=36.4
Q ss_pred CCCEEEEEecC------CeEEEEEccc-CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC--CEEEEecCCCCC
Q 010390 285 NGVFLTASCMD------HRIYLYNVLQ-LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG--NAYVWQVNKPQA 354 (512)
Q Consensus 285 ~~~~l~~~~~d------g~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--~i~iw~~~~~~~ 354 (512)
+++..+.|+.+ ..+..||..+ .....+..+....... .++ .-+++..++|+.++ .+..||..+.+-
T Consensus 463 ~~~IYv~GG~~~~~~~~~~ve~Ydp~~~~~W~~~~~m~~~r~~~---~~~-~~~~~iyv~Gg~~~~~~~e~yd~~~~~W 537 (557)
T PHA02713 463 KDDIYVVCDIKDEKNVKTCIFRYNTNTYNGWELITTTESRLSAL---HTI-LHDNTIMMLHCYESYMLQDTFNVYTYEW 537 (557)
T ss_pred CCEEEEEeCCCCCCccceeEEEecCCCCCCeeEccccCcccccc---eeE-EECCEEEEEeeecceeehhhcCcccccc
Confidence 45666666643 2467788765 3333322222221111 111 13678888999888 677777776554
No 392
>KOG2444 consensus WD40 repeat protein [General function prediction only]
Probab=96.63 E-value=0.01 Score=49.47 Aligned_cols=105 Identities=17% Similarity=0.141 Sum_probs=66.2
Q ss_pred CcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEE-EEecCCCEEEEEeCCCcEEEEeCCCCeee
Q 010390 65 SHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDL-CWIKEDTNILTASGDQTIKIWDAEKKKCT 143 (512)
Q Consensus 65 ~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l-~~s~~~~~l~s~~~dg~i~iwd~~~~~~~ 143 (512)
+.-+++|+.+|.|.+|..+.... .......-.+.|-++ .--.++.+..+++.||.|+.|++.-.+.+
T Consensus 70 ~~~~~vG~~dg~v~~~n~n~~g~------------~~d~~~s~~e~i~~~Ip~~~~~~~~c~~~~dg~ir~~n~~p~k~~ 137 (238)
T KOG2444|consen 70 SAKLMVGTSDGAVYVFNWNLEGA------------HSDRVCSGEESIDLGIPNGRDSSLGCVGAQDGRIRACNIKPNKVL 137 (238)
T ss_pred CceEEeecccceEEEecCCccch------------HHHhhhcccccceeccccccccceeEEeccCCceeeeccccCcee
Confidence 45688899999999998762211 011111112233222 22224557789999999999999988888
Q ss_pred ecccCcC-CCEEEEEeeCCCCCeEEEE--eCCCcEEEEeCCC
Q 010390 144 GALMGHT-GSIKSLCSHPTNSDILVSG--SRDGSFAIWDLRC 182 (512)
Q Consensus 144 ~~~~~h~-~~v~~l~~~~~~~~~l~s~--~~dg~i~vwd~~~ 182 (512)
.....|. .++..+..+..+ ..++.+ +.|..++.|++..
T Consensus 138 g~~g~h~~~~~e~~ivv~sd-~~i~~a~~S~d~~~k~W~ve~ 178 (238)
T KOG2444|consen 138 GYVGQHNFESGEELIVVGSD-EFLKIADTSHDRVLKKWNVEK 178 (238)
T ss_pred eeeccccCCCcceeEEecCC-ceEEeeccccchhhhhcchhh
Confidence 8777777 455544444444 555555 6667777777653
No 393
>KOG4441 consensus Proteins containing BTB/POZ and Kelch domains, involved in regulatory/signal transduction processes [Signal transduction mechanisms; General function prediction only]
Probab=96.62 E-value=0.27 Score=49.18 Aligned_cols=234 Identities=13% Similarity=0.077 Sum_probs=119.7
Q ss_pred CCCEEEEEeCC------CcEEEEeCCCCeee--ecccCcCCCEEEEEeeCCCCCeEEEEeCC------CcEEEEeCCCCC
Q 010390 119 EDTNILTASGD------QTIKIWDAEKKKCT--GALMGHTGSIKSLCSHPTNSDILVSGSRD------GSFAIWDLRCKS 184 (512)
Q Consensus 119 ~~~~l~s~~~d------g~i~iwd~~~~~~~--~~~~~h~~~v~~l~~~~~~~~~l~s~~~d------g~i~vwd~~~~~ 184 (512)
.+..++.||.+ ..+..+|..+++.. ..+. ....-.+++... + .+.++||.| .++..||.+..+
T Consensus 284 ~~~l~~vGG~~~~~~~~~~ve~yd~~~~~w~~~a~m~-~~r~~~~~~~~~-~-~lYv~GG~~~~~~~l~~ve~YD~~~~~ 360 (571)
T KOG4441|consen 284 SGKLVAVGGYNRQGQSLRSVECYDPKTNEWSSLAPMP-SPRCRVGVAVLN-G-KLYVVGGYDSGSDRLSSVERYDPRTNQ 360 (571)
T ss_pred CCeEEEECCCCCCCcccceeEEecCCcCcEeecCCCC-cccccccEEEEC-C-EEEEEccccCCCcccceEEEecCCCCc
Confidence 35566677776 36788898877432 2233 233344555554 3 788999988 346667776554
Q ss_pred CCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC-----eEEEEeccCccceecc
Q 010390 185 SPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS-----IVKFWDTRNLKAQITQ 259 (512)
Q Consensus 185 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg-----~i~iwd~~~~~~~~~~ 259 (512)
-.... .....-.......-+..+.+.|+.|| .+..||..+.+-....
T Consensus 361 W~~~a----------------------------~M~~~R~~~~v~~l~g~iYavGG~dg~~~l~svE~YDp~~~~W~~va 412 (571)
T KOG4441|consen 361 WTPVA----------------------------PMNTKRSDFGVAVLDGKLYAVGGFDGEKSLNSVECYDPVTNKWTPVA 412 (571)
T ss_pred eeccC----------------------------CccCccccceeEEECCEEEEEeccccccccccEEEecCCCCcccccC
Confidence 22211 00011111222222344555566776 4777887765533221
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEecCC------eEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCC
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDH------RIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNAS 333 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg------~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~ 333 (512)
. ........-.. .-+|.+.++|+.++ ++..||..+........+....... . .-.-++.
T Consensus 413 ~---------m~~~r~~~gv~--~~~g~iYi~GG~~~~~~~l~sve~YDP~t~~W~~~~~M~~~R~~~---g-~a~~~~~ 477 (571)
T KOG4441|consen 413 P---------MLTRRSGHGVA--VLGGKLYIIGGGDGSSNCLNSVECYDPETNTWTLIAPMNTRRSGF---G-VAVLNGK 477 (571)
T ss_pred C---------CCcceeeeEEE--EECCEEEEEcCcCCCccccceEEEEcCCCCceeecCCcccccccc---e-EEEECCE
Confidence 0 11111111111 22677777887553 5677886654433332222211111 1 1124567
Q ss_pred EEEEecCCCC-----EEEEecCCCCCCCce-eccccCCeEEEEeCCCCCCeEEEEeCCC-----cEEEEeCCCCccccc
Q 010390 334 HILSGSSDGN-----AYVWQVNKPQADPIK-LKSHDGEVTAVNWCPNEAGKIVTSSDDY-----TVRLWSLENSRCSSM 401 (512)
Q Consensus 334 ~l~~g~~dg~-----i~iw~~~~~~~~~~~-~~~h~~~v~~v~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~ 401 (512)
+.+.|+.|+. |..||..+.+-.... +......+..+.+ ++ .+.+.|+.|| +|..||..+.+....
T Consensus 478 iYvvGG~~~~~~~~~VE~ydp~~~~W~~v~~m~~~rs~~g~~~~--~~-~ly~vGG~~~~~~l~~ve~ydp~~d~W~~~ 553 (571)
T KOG4441|consen 478 IYVVGGFDGTSALSSVERYDPETNQWTMVAPMTSPRSAVGVVVL--GG-KLYAVGGFDGNNNLNTVECYDPETDTWTEV 553 (571)
T ss_pred EEEECCccCCCccceEEEEcCCCCceeEcccCccccccccEEEE--CC-EEEEEecccCccccceeEEcCCCCCceeeC
Confidence 7788887763 777887765432211 2222223333333 23 6888888775 667777777665443
No 394
>PF12894 Apc4_WD40: Anaphase-promoting complex subunit 4 WD40 domain
Probab=96.59 E-value=0.009 Score=36.50 Aligned_cols=30 Identities=20% Similarity=0.338 Sum_probs=25.1
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR 83 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~ 83 (512)
.+|.+++| +|..++||.|..+|.|.||.++
T Consensus 12 ~~v~~~~w---~P~mdLiA~~t~~g~v~v~Rl~ 41 (47)
T PF12894_consen 12 SRVSCMSW---CPTMDLIALGTEDGEVLVYRLN 41 (47)
T ss_pred CcEEEEEE---CCCCCEEEEEECCCeEEEEECC
Confidence 34555555 9999999999999999999984
No 395
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=96.53 E-value=0.0061 Score=60.64 Aligned_cols=59 Identities=22% Similarity=0.352 Sum_probs=43.9
Q ss_pred CccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCC
Q 010390 48 GEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKED 120 (512)
Q Consensus 48 gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~ 120 (512)
.-..++.-|.||+|-++.-++..+..+|.|++-+.++.. ...+.+|...+..++|...|
T Consensus 178 p~gs~~~~V~wcp~~~~~~~ic~~~~~~~i~lL~~~ra~--------------~~l~rsHs~~~~d~a~~~~g 236 (1283)
T KOG1916|consen 178 PYGSDPQLVSWCPIAVNKVYICYGLKGGEIRLLNINRAL--------------RSLFRSHSQRVTDMAFFAEG 236 (1283)
T ss_pred cCCCCcceeeecccccccceeeeccCCCceeEeeechHH--------------HHHHHhcCCCcccHHHHhhc
Confidence 344556889999999999999999999999998776432 23455688887777765443
No 396
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=96.42 E-value=0.66 Score=41.95 Aligned_cols=152 Identities=11% Similarity=0.147 Sum_probs=76.0
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQ 130 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg 130 (512)
+.+..+.. ++||+++|++..-....-||-....- .+. -+.-...|..|.|.|++...+.+ ..|
T Consensus 145 gs~~~~~r---~~dG~~vavs~~G~~~~s~~~G~~~w-----------~~~--~r~~~~riq~~gf~~~~~lw~~~-~Gg 207 (302)
T PF14870_consen 145 GSINDITR---SSDGRYVAVSSRGNFYSSWDPGQTTW-----------QPH--NRNSSRRIQSMGFSPDGNLWMLA-RGG 207 (302)
T ss_dssp --EEEEEE----TTS-EEEEETTSSEEEEE-TT-SS------------EEE--E--SSS-EEEEEE-TTS-EEEEE-TTT
T ss_pred ceeEeEEE---CCCCcEEEEECcccEEEEecCCCccc-----------eEE--ccCccceehhceecCCCCEEEEe-CCc
Confidence 44556555 89999999987555556777432110 111 12245789999999997765644 888
Q ss_pred cEEEEe-CCCCee----eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 131 TIKIWD-AEKKKC----TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 131 ~i~iwd-~~~~~~----~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
.|+.=+ ....+. +..+....-.+..++|.+++ ...++|+ .|.+.+ ....++.=.
T Consensus 208 ~~~~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~-~~wa~gg-~G~l~~-S~DgGktW~------------------ 266 (302)
T PF14870_consen 208 QIQFSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPN-EIWAVGG-SGTLLV-STDGGKTWQ------------------ 266 (302)
T ss_dssp EEEEEE-TTEEEEE---B-TTSS--S-EEEEEESSSS--EEEEES-TT-EEE-ESSTTSS-E------------------
T ss_pred EEEEccCCCCccccccccCCcccCceeeEEEEecCCC-CEEEEeC-CccEEE-eCCCCccce------------------
Confidence 888876 222221 11122233358899999875 5666555 455433 333332111
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW 248 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw 248 (512)
.......-...++.+.|....+-++. | .+|.|.-|
T Consensus 267 ------~~~~~~~~~~n~~~i~f~~~~~gf~l-G-~~G~ll~~ 301 (302)
T PF14870_consen 267 ------KDRVGENVPSNLYRIVFVNPDKGFVL-G-QDGVLLRY 301 (302)
T ss_dssp ------E-GGGTTSSS---EEEEEETTEEEEE---STTEEEEE
T ss_pred ------ECccccCCCCceEEEEEcCCCceEEE-C-CCcEEEEe
Confidence 00111122446888999877666665 6 68887655
No 397
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.36 E-value=0.085 Score=54.43 Aligned_cols=157 Identities=10% Similarity=0.068 Sum_probs=91.7
Q ss_pred ccEEEEEEeecCCEEEEEee-cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC-EEEEEecCCeE
Q 010390 221 MSITSVLYLKDEVSIATASA-VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV-FLTASCMDHRI 298 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~-~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~-~l~~~~~dg~i 298 (512)
..+..+...+|....++..+ ++-.|..||+++..........................++.|.|.-. ..++...|+.|
T Consensus 101 ~pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~pl~~s~ts~ek~vf~~~~~wnP~vp~n~av~l~dlsl 180 (1405)
T KOG3630|consen 101 IPIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVPLKNSATSFEKPVFQLKNVWNPLVPLNSAVDLSDLSL 180 (1405)
T ss_pred ccceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccccccccchhccccccccccccCCccchhhhhccccch
Confidence 35666666777665554443 34478899998765433221111000001222223456788887543 45566688999
Q ss_pred EEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCC-Ccee-ccccCCeEEEEeCCCCC
Q 010390 299 YLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQAD-PIKL-KSHDGEVTAVNWCPNEA 376 (512)
Q Consensus 299 ~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~-~~~~-~~h~~~v~~v~~~~~~~ 376 (512)
++..+..... ...........++++|+|.|+.++.|-..|++.-|...-.... +... ......|.+|.|-...
T Consensus 181 ~V~~~~~~~~----~v~s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~leik~~ip~Pp~~e~yrvl~v~Wl~t~- 255 (1405)
T KOG3630|consen 181 RVKSTKQLAQ----NVTSFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLEIKSEIPEPPVEENYRVLSVTWLSTQ- 255 (1405)
T ss_pred hhhhhhhhhh----hhcccCcccceeeEEeccccceeeEecCCCeEEEeecccceeecccCCCcCCCcceeEEEEecce-
Confidence 8888743221 1111233455788999999999999999999998865432110 0011 1114689999998766
Q ss_pred CeEEEE
Q 010390 377 GKIVTS 382 (512)
Q Consensus 377 ~~l~s~ 382 (512)
.++++-
T Consensus 256 eflvvy 261 (1405)
T KOG3630|consen 256 EFLVVY 261 (1405)
T ss_pred eEEEEe
Confidence 455543
No 398
>PF15390 DUF4613: Domain of unknown function (DUF4613)
Probab=96.19 E-value=0.29 Score=47.13 Aligned_cols=120 Identities=17% Similarity=0.243 Sum_probs=73.7
Q ss_pred cCCCcEEEEEEecC----CCEEEEEeCCCcEEEEeCCC-----Ceeee----cccCcCCC--EEEEEeeCCCCCeEEEEe
Q 010390 106 AHQNAIFDLCWIKE----DTNILTASGDQTIKIWDAEK-----KKCTG----ALMGHTGS--IKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 106 ~h~~~V~~l~~s~~----~~~l~s~~~dg~i~iwd~~~-----~~~~~----~~~~h~~~--v~~l~~~~~~~~~l~s~~ 170 (512)
+.-+.|..++|.|- ...|++......|.||.+.. .+.+. .+. ..-+ -....|+|.. ..|+.-.
T Consensus 54 GqFEhV~GlsW~P~~~~~~paLLAVQHkkhVtVWqL~~s~~e~~K~l~sQtcEi~-e~~pvLpQGCVWHPk~-~iL~VLT 131 (671)
T PF15390_consen 54 GQFEHVHGLSWAPPCTADTPALLAVQHKKHVTVWQLCPSTTERNKLLMSQTCEIR-EPFPVLPQGCVWHPKK-AILTVLT 131 (671)
T ss_pred eccceeeeeeecCcccCCCCceEEEeccceEEEEEeccCccccccceeeeeeecc-CCcccCCCcccccCCC-ceEEEEe
Confidence 34467999999993 44566666788899998752 22221 111 0111 1345699987 5666555
Q ss_pred CCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390 171 RDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT 250 (512)
Q Consensus 171 ~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~ 250 (512)
....-.+++++..... +.......+.|.|.+|.+||+.++++-+..-.-++||-
T Consensus 132 ~~dvSV~~sV~~d~sr--------------------------VkaDi~~~G~IhCACWT~DG~RLVVAvGSsLHSyiWd~ 185 (671)
T PF15390_consen 132 ARDVSVLPSVHCDSSR--------------------------VKADIKTSGLIHCACWTKDGQRLVVAVGSSLHSYIWDS 185 (671)
T ss_pred cCceeEeeeeeeCCce--------------------------EEEeccCCceEEEEEecCcCCEEEEEeCCeEEEEEecC
Confidence 5444455565533211 11122345689999999999999887655556788886
Q ss_pred cCc
Q 010390 251 RNL 253 (512)
Q Consensus 251 ~~~ 253 (512)
...
T Consensus 186 ~qK 188 (671)
T PF15390_consen 186 AQK 188 (671)
T ss_pred chh
Confidence 644
No 399
>KOG3630 consensus Nuclear pore complex, Nup214/CAN component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=96.16 E-value=0.23 Score=51.47 Aligned_cols=157 Identities=10% Similarity=-0.023 Sum_probs=89.5
Q ss_pred CEEEEEeeCCCCCeEE-EEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee
Q 010390 152 SIKSLCSHPTNSDILV-SGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK 230 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~-s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~ 230 (512)
++..+...++.....+ ..+.+-.|..||++.-.......... ...............++.|+|
T Consensus 102 pi~~~v~~~D~t~s~v~~tsng~~v~~fD~~~fs~s~~~~~~p----------------l~~s~ts~ek~vf~~~~~wnP 165 (1405)
T KOG3630|consen 102 PIVIFVCFHDATDSVVVSTSNGEAVYSFDLEEFSESRYETTVP----------------LKNSATSFEKPVFQLKNVWNP 165 (1405)
T ss_pred cceEEEeccCCceEEEEEecCCceEEEEehHhhhhhhhhhccc----------------cccccchhccccccccccccC
Confidence 4555556666422222 33333478889987543322111000 000111122234567788888
Q ss_pred cCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc
Q 010390 231 DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP 310 (512)
Q Consensus 231 ~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~ 310 (512)
.-....++...|+.|.+..+........ ........++++|+|.|+.++.|...|++.-|...-. .
T Consensus 166 ~vp~n~av~l~dlsl~V~~~~~~~~~v~-----------s~p~t~~~Tav~WSprGKQl~iG~nnGt~vQy~P~le---i 231 (1405)
T KOG3630|consen 166 LVPLNSAVDLSDLSLRVKSTKQLAQNVT-----------SFPVTNSQTAVLWSPRGKQLFIGRNNGTEVQYEPSLE---I 231 (1405)
T ss_pred Cccchhhhhccccchhhhhhhhhhhhhc-----------ccCcccceeeEEeccccceeeEecCCCeEEEeecccc---e
Confidence 7655555566788888877664333221 1223345899999999999999999999999985321 1
Q ss_pred eEeeeece--eceeEEEEEECCCCCEEEEe
Q 010390 311 IQHFSGCR--IESFYVKSEICPNASHILSG 338 (512)
Q Consensus 311 ~~~~~~~~--~~~~~~~~~~s~~~~~l~~g 338 (512)
...+.+.. ....+.+++|-....++++-
T Consensus 232 k~~ip~Pp~~e~yrvl~v~Wl~t~eflvvy 261 (1405)
T KOG3630|consen 232 KSEIPEPPVEENYRVLSVTWLSTQEFLVVY 261 (1405)
T ss_pred eecccCCCcCCCcceeEEEEecceeEEEEe
Confidence 12222111 13457788887777777653
No 400
>TIGR03075 PQQ_enz_alc_DH PQQ-dependent dehydrogenase, methanol/ethanol family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Genes in this family often are found adjacent to the PQQ biosynthesis genes themselves. An unusual, strained disulfide bond between adjacent Cys residues contributes to PQQ-binding, as does a Trp residue that is part of a PQQ enzyme repeat (see pfam01011). Characterized members include the dehydrogenase subunit of a membrane-anchored, three subunit alcohol (ethanol) dehydrogenase of Gluconobacter suboxydans, a homodimeric ethanol dehydrogenase in Pseudomonas aeruginosa, and the large subunit of an alpha2/beta2 heterotetrameric methanol dehydrogenase in Methylobacterium extorquens.
Probab=96.09 E-value=1.7 Score=43.21 Aligned_cols=26 Identities=8% Similarity=0.107 Sum_probs=21.0
Q ss_pred CCCEEEEecCCCCEEEEecCCCCCCC
Q 010390 331 NASHILSGSSDGNAYVWQVNKPQADP 356 (512)
Q Consensus 331 ~~~~l~~g~~dg~i~iw~~~~~~~~~ 356 (512)
.+.+++.++.+|.++.+|.++++...
T Consensus 471 ~g~lvf~g~~~G~l~a~D~~TGe~lw 496 (527)
T TIGR03075 471 AGDLVFYGTLEGYFKAFDAKTGEELW 496 (527)
T ss_pred CCcEEEEECCCCeEEEEECCCCCEeE
Confidence 44567778889999999999998743
No 401
>KOG2079 consensus Vacuolar assembly/sorting protein VPS8 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.83 E-value=0.069 Score=54.70 Aligned_cols=101 Identities=13% Similarity=0.211 Sum_probs=69.8
Q ss_pred EEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeee
Q 010390 236 ATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFS 315 (512)
Q Consensus 236 ~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~ 315 (512)
++.|+..|.+-..|....-.... ....-.++|++++|+.+|..++.|-.+|.|.+||+............
T Consensus 102 ivi~Ts~ghvl~~d~~~nL~~~~----------~ne~v~~~Vtsvafn~dg~~l~~G~~~G~V~v~D~~~~k~l~~i~e~ 171 (1206)
T KOG2079|consen 102 IVIGTSHGHVLLSDMTGNLGPLH----------QNERVQGPVTSVAFNQDGSLLLAGLGDGHVTVWDMHRAKILKVITEH 171 (1206)
T ss_pred EEEEcCchhhhhhhhhcccchhh----------cCCccCCcceeeEecCCCceeccccCCCcEEEEEccCCcceeeeeec
Confidence 33466788888888776422111 23444578999999999999999999999999999765444444555
Q ss_pred eceeceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390 316 GCRIESFYVKSEICPNASHILSGSSDGNAYVWQV 349 (512)
Q Consensus 316 ~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~ 349 (512)
+++... +..+.+..++..++++...|. +|.+
T Consensus 172 ~ap~t~-vi~v~~t~~nS~llt~D~~Gs--f~~l 202 (1206)
T KOG2079|consen 172 GAPVTG-VIFVGRTSQNSKLLTSDTGGS--FWKL 202 (1206)
T ss_pred CCccce-EEEEEEeCCCcEEEEccCCCc--eEEE
Confidence 555444 444555566667888887776 5544
No 402
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=95.82 E-value=1.6 Score=40.59 Aligned_cols=273 Identities=10% Similarity=0.095 Sum_probs=119.3
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccce-eccccCCCcEEEEEEecC---CCEEE-EE
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARI-SDWVAHQNAIFDLCWIKE---DTNIL-TA 126 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~-~~~~~h~~~V~~l~~s~~---~~~l~-s~ 126 (512)
.+++|+| .|||++|++ ...|.|++++.+.... . ....+ ............++++|+ ..+|. +.
T Consensus 3 ~P~~~a~---~pdG~l~v~-e~~G~i~~~~~~g~~~-~-------~v~~~~~v~~~~~~gllgia~~p~f~~n~~lYv~~ 70 (331)
T PF07995_consen 3 NPRSMAF---LPDGRLLVA-ERSGRIWVVDKDGSLK-T-------PVADLPEVFADGERGLLGIAFHPDFASNGYLYVYY 70 (331)
T ss_dssp SEEEEEE---ETTSCEEEE-ETTTEEEEEETTTEEC-E-------EEEE-TTTBTSTTBSEEEEEE-TTCCCC-EEEEEE
T ss_pred CceEEEE---eCCCcEEEE-eCCceEEEEeCCCcCc-c-------eecccccccccccCCcccceeccccCCCCEEEEEE
Confidence 3567888 899987665 5699999999332210 0 00001 123445678999999994 33443 33
Q ss_pred eCC--------CcEEEEeCCCC-------eee-ecccC---cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCC
Q 010390 127 SGD--------QTIKIWDAEKK-------KCT-GALMG---HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPK 187 (512)
Q Consensus 127 ~~d--------g~i~iwd~~~~-------~~~-~~~~~---h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~ 187 (512)
+.. ..|.-|....+ +.+ ..+.. ....-..|.|.|++ .+.++.+..+. ....+...
T Consensus 71 t~~~~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG-~LYvs~G~~~~-----~~~~~~~~ 144 (331)
T PF07995_consen 71 TNADEDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDG-KLYVSVGDGGN-----DDNAQDPN 144 (331)
T ss_dssp EEE-TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTS-EEEEEEB-TTT-----GGGGCSTT
T ss_pred EcccCCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCC-cEEEEeCCCCC-----cccccccc
Confidence 321 23444444333 111 11111 22345679999998 77676665544 11111111
Q ss_pred Cccccceeeecc-cccccccc--cccccceecccccccEEEEEEeec-CCEEEEEeecCCeEEEEeccCccce---ecc-
Q 010390 188 SNCAESFVFSSA-VVKGAHLL--SQSKRVSRRKAASMSITSVLYLKD-EVSIATASAVNSIVKFWDTRNLKAQ---ITQ- 259 (512)
Q Consensus 188 ~~~~~~~~~~~~-~~~~~~~~--~~~~~~~~~~~~~~~v~~~~~~~~-~~~l~~~g~~dg~i~iwd~~~~~~~---~~~- 259 (512)
......+..... ........ ........+...-.....++|+|. +..+++--+.+..=.|--+..+... ...
T Consensus 145 ~~~G~ilri~~dG~~p~dnP~~~~~~~~~~i~A~GlRN~~~~~~d~~tg~l~~~d~G~~~~dein~i~~G~nYGWP~~~~ 224 (331)
T PF07995_consen 145 SLRGKILRIDPDGSIPADNPFVGDDGADSEIYAYGLRNPFGLAFDPNTGRLWAADNGPDGWDEINRIEPGGNYGWPYCEG 224 (331)
T ss_dssp SSTTEEEEEETTSSB-TTSTTTTSTTSTTTEEEE--SEEEEEEEETTTTEEEEEEE-SSSSEEEEEE-TT-B--TTTBSS
T ss_pred cccceEEEecccCcCCCCCccccCCCceEEEEEeCCCccccEEEECCCCcEEEEccCCCCCcEEEEeccCCcCCCCCCcC
Confidence 111110000000 00000000 000011122223345678999998 6555543333333333333322210 000
Q ss_pred -------------cCC-CccccccccccccCeeEEEeCC-------CCCEEEEEecCCeEEEEEcccCCCCceEeeee--
Q 010390 260 -------------AWP-HAESSSAKETRLHGISSLSQDS-------NGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG-- 316 (512)
Q Consensus 260 -------------~~~-~~~~~~~~~~~~~~i~~~~~~~-------~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~-- 316 (512)
..+ ...+...+ .+...+..+.|.. .+.+++..-..+.|....+..... +.....
T Consensus 225 ~~~~~~~~~~~~~~~~~~~~P~~~~-~~~~ap~G~~~y~g~~fp~~~g~~~~~~~~~~~i~~~~~~~~~~--~~~~~~~~ 301 (331)
T PF07995_consen 225 GPKYSGPPIGDAPSCPGFVPPVFAY-PPHSAPTGIIFYRGSAFPEYRGDLFVADYGGGRIWRLDLDEDGS--VTEEEEFL 301 (331)
T ss_dssp SCSTTSS-ECTGSS-TTS---SEEE-TTT--EEEEEEE-SSSSGGGTTEEEEEETTTTEEEEEEEETTEE--EEEEEEEC
T ss_pred CCCCCCCccccccCCCCcCccceee-cCccccCceEEECCccCccccCcEEEecCCCCEEEEEeeecCCC--ccceEEcc
Confidence 000 00011111 2224455666643 345666666667888888753211 111111
Q ss_pred ceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390 317 CRIESFYVKSEICPNASHILSGSSDGNAY 345 (512)
Q Consensus 317 ~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 345 (512)
......++.+++.|||.+.++-+.+|.|+
T Consensus 302 ~~~~~r~~~v~~~pDG~Lyv~~d~~G~iy 330 (331)
T PF07995_consen 302 GGFGGRPRDVAQGPDGALYVSDDSDGKIY 330 (331)
T ss_dssp TTSSS-EEEEEEETTSEEEEEE-TTTTEE
T ss_pred ccCCCCceEEEEcCCCeEEEEECCCCeEe
Confidence 12223577899999999988888888764
No 403
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=95.74 E-value=0.41 Score=48.12 Aligned_cols=159 Identities=15% Similarity=0.111 Sum_probs=95.1
Q ss_pred CCEEEEEeecCCeEEEEeccCccceec------cc-CCCccc-----cccccccccCeeEEEeCC--CCCEEEEEecCCe
Q 010390 232 EVSIATASAVNSIVKFWDTRNLKAQIT------QA-WPHAES-----SSAKETRLHGISSLSQDS--NGVFLTASCMDHR 297 (512)
Q Consensus 232 ~~~l~~~g~~dg~i~iwd~~~~~~~~~------~~-~~~~~~-----~~~~~~~~~~i~~~~~~~--~~~~l~~~~~dg~ 297 (512)
...++++ ..+.|.||+.+....... .. .+.... ..... ..+.|+.|.... +...|+.+..||.
T Consensus 49 ~n~LFiA--~~s~I~Vy~~d~l~~~p~~~p~~~~~t~p~~~~~~D~~~s~~p-~PHtIN~i~v~~lg~~EVLl~c~DdG~ 125 (717)
T PF08728_consen 49 RNLLFIA--YQSEIYVYDPDGLTQLPSRKPCLRFDTKPEFTSTPDRLISTWP-FPHTINFIKVGDLGGEEVLLLCTDDGD 125 (717)
T ss_pred CCEEEEE--ECCEEEEEecCCcccccccccccccccCccccccccccccCCC-CCceeeEEEecccCCeeEEEEEecCCe
Confidence 5566664 389999999876544221 00 000000 00011 334566665543 5568999999999
Q ss_pred EEEEEcccCC-----------C----CceEeeeeceeceeEEEEEEC--CCCCEEEEecCCCCEEEEecCCC--CCCCce
Q 010390 298 IYLYNVLQLD-----------K----GPIQHFSGCRIESFYVKSEIC--PNASHILSGSSDGNAYVWQVNKP--QADPIK 358 (512)
Q Consensus 298 i~i~d~~~~~-----------~----~~~~~~~~~~~~~~~~~~~~s--~~~~~l~~g~~dg~i~iw~~~~~--~~~~~~ 358 (512)
|.+|.+.... . ..+..............++++ ...++||++++...|.||-+... +.....
T Consensus 126 V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~v~~SaWGLdIh~~~~~rlIAVSsNs~~VTVFaf~l~~~r~~~~~ 205 (717)
T PF08728_consen 126 VLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLRVGASAWGLDIHDYKKSRLIAVSSNSQEVTVFAFALVDERFYHVP 205 (717)
T ss_pred EEEEEHHHHHHHHHhhccccccccccccCCCCeEeecCCceeEEEEEecCcceEEEEecCCceEEEEEEecccccccccc
Confidence 9999863210 0 000011111223346678887 77889999999888988876543 211111
Q ss_pred eccccCCeEEEEeCCCC--CC---eEEEEeCCCcEEEEeC
Q 010390 359 LKSHDGEVTAVNWCPNE--AG---KIVTSSDDYTVRLWSL 393 (512)
Q Consensus 359 ~~~h~~~v~~v~~~~~~--~~---~l~s~~~dg~i~vwd~ 393 (512)
-..|...|-+|.|.++. +. .|++++-.|.+-+|++
T Consensus 206 s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 206 SHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred ccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 22356679999997654 22 7888999999999888
No 404
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.59 E-value=0.26 Score=45.74 Aligned_cols=164 Identities=10% Similarity=0.058 Sum_probs=101.8
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLY 301 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~ 301 (512)
..+.+-|...++.++++- .|.+.=|.+.....-. +........++|.++.|++|.+.|++--.+.+|.++
T Consensus 24 esngvFfDDaNkqlfavr--SggatgvvvkgpndDV--------piSfdm~d~G~I~SIkFSlDnkilAVQR~~~~v~f~ 93 (657)
T KOG2377|consen 24 ESNGVFFDDANKQLFAVR--SGGATGVVVKGPNDDV--------PISFDMDDKGEIKSIKFSLDNKILAVQRTSKTVDFC 93 (657)
T ss_pred cccceeeccCcceEEEEe--cCCeeEEEEeCCCCCC--------CceeeecCCCceeEEEeccCcceEEEEecCceEEEE
Confidence 345566666666666543 5666666655433111 001223344689999999999999999999999999
Q ss_pred EcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEE
Q 010390 302 NVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVT 381 (512)
Q Consensus 302 d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s 381 (512)
+....+...............+....|+.+ .-+|.-...| +.+|.+...+...+....|.-.|.=..|+++..-.|++
T Consensus 94 nf~~d~~~l~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~ 171 (657)
T KOG2377|consen 94 NFIPDNSQLEYTQECKTKNANILGFCWTSS-TEIAFITDQG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLS 171 (657)
T ss_pred ecCCCchhhHHHHHhccCcceeEEEEEecC-eeEEEEecCC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeee
Confidence 974433222222222222233667888776 5566666555 88888776666566677788888888899887333444
Q ss_pred Ee-CCCcEEEEeCCCCc
Q 010390 382 SS-DDYTVRLWSLENSR 397 (512)
Q Consensus 382 ~~-~dg~i~vwd~~~~~ 397 (512)
.+ ..+++.=+.+.++.
T Consensus 172 t~~~~n~lnpf~~~~~~ 188 (657)
T KOG2377|consen 172 TTVLENVLNPFHFRAGT 188 (657)
T ss_pred ccccccccccEEEeece
Confidence 44 34444445444443
No 405
>KOG2377 consensus Uncharacterized conserved protein [Function unknown]
Probab=95.53 E-value=1.1 Score=41.90 Aligned_cols=108 Identities=16% Similarity=0.272 Sum_probs=76.2
Q ss_pred ccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 49 EETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
.+++|.+|.| |+|.+.||+--.+..|.+++....++.. ....+.+.....|....|+.+ .-+|.-..
T Consensus 65 d~G~I~SIkF---SlDnkilAVQR~~~~v~f~nf~~d~~~l---------~~~~~ck~k~~~IlGF~W~~s-~e~A~i~~ 131 (657)
T KOG2377|consen 65 DKGEIKSIKF---SLDNKILAVQRTSKTVDFCNFIPDNSQL---------EYTQECKTKNANILGFCWTSS-TEIAFITD 131 (657)
T ss_pred CCCceeEEEe---ccCcceEEEEecCceEEEEecCCCchhh---------HHHHHhccCcceeEEEEEecC-eeEEEEec
Confidence 5678999999 9999999999999999999985443211 123334445567999999855 66776665
Q ss_pred CCcEEEEeCCCC-eeeecccCcCCCEEEEEeeCCCCCeEEEEe
Q 010390 129 DQTIKIWDAEKK-KCTGALMGHTGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 129 dg~i~iwd~~~~-~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 170 (512)
.| +-+|-.... +.++..+.|+..|+-..|.++..-.|++.+
T Consensus 132 ~G-~e~y~v~pekrslRlVks~~~nvnWy~yc~et~v~LL~t~ 173 (657)
T KOG2377|consen 132 QG-IEFYQVLPEKRSLRLVKSHNLNVNWYMYCPETAVILLSTT 173 (657)
T ss_pred CC-eEEEEEchhhhhhhhhhhcccCccEEEEccccceEeeecc
Confidence 56 777765443 345566778888998899987633344444
No 406
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=95.15 E-value=2.2 Score=42.71 Aligned_cols=52 Identities=15% Similarity=0.326 Sum_probs=38.8
Q ss_pred CCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 129 DQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 129 dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
--.|+|++. +|+.+..+.-..+.+-.+.|+.+ ..|++...||++++|++...
T Consensus 63 ~~~I~If~~-sG~lL~~~~w~~~~lI~mgWs~~--eeLI~v~k~g~v~Vy~~~ge 114 (829)
T KOG2280|consen 63 RPYIRIFNI-SGQLLGRILWKHGELIGMGWSDD--EELICVQKDGTVHVYGLLGE 114 (829)
T ss_pred ceeEEEEec-cccchHHHHhcCCCeeeecccCC--ceEEEEeccceEEEeecchh
Confidence 345888885 56666665544458889999875 57888899999999998643
No 407
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=95.13 E-value=2.2 Score=37.84 Aligned_cols=160 Identities=14% Similarity=0.085 Sum_probs=92.0
Q ss_pred cEEEEEEeecCCEEEEEe--ecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 222 SITSVLYLKDEVSIATAS--AVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g--~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
.+.+.+.++++..+++.. .....+.++......... . ....+..-.|++++...+....+...+
T Consensus 25 ~~~s~AvS~dg~~~A~v~~~~~~~~L~~~~~~~~~~~~------------~--~g~~l~~PS~d~~g~~W~v~~~~~~~~ 90 (253)
T PF10647_consen 25 DVTSPAVSPDGSRVAAVSEGDGGRSLYVGPAGGPVRPV------------L--TGGSLTRPSWDPDGWVWTVDDGSGGVR 90 (253)
T ss_pred cccceEECCCCCeEEEEEEcCCCCEEEEEcCCCcceee------------c--cCCccccccccCCCCEEEEEcCCCceE
Confidence 688999999999888766 333455555443322211 1 223577888999988777776666666
Q ss_pred EEE-cccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec---CCCCEEEEecCCCCCC--------CceeccccCCeE
Q 010390 300 LYN-VLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS---SDGNAYVWQVNKPQAD--------PIKLKSHDGEVT 367 (512)
Q Consensus 300 i~d-~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~---~dg~i~iw~~~~~~~~--------~~~~~~h~~~v~ 367 (512)
++. ......... ..........|..+.+||||..++... .++.|.+--+.....- ..........++
T Consensus 91 ~~~~~~~g~~~~~-~v~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~ 169 (253)
T PF10647_consen 91 VVRDSASGTGEPV-EVDWPGLRGRITALRVSPDGTRVAVVVEDGGGGRVYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVT 169 (253)
T ss_pred EEEecCCCcceeE-EecccccCCceEEEEECCCCcEEEEEEecCCCCeEEEEEEEeCCCCCcceeccceEecccccCcce
Confidence 664 222222111 111111111688899999999886654 3466777655322111 111122346899
Q ss_pred EEEeCCCCCCeEEEEe-CCCcEEE-EeCCCCc
Q 010390 368 AVNWCPNEAGKIVTSS-DDYTVRL-WSLENSR 397 (512)
Q Consensus 368 ~v~~~~~~~~~l~s~~-~dg~i~v-wd~~~~~ 397 (512)
+++|.+++ .+++.+. .++.+.. ..+..+.
T Consensus 170 ~v~W~~~~-~L~V~~~~~~~~~~~~v~~dG~~ 200 (253)
T PF10647_consen 170 DVAWSDDS-TLVVLGRSAGGPVVRLVSVDGGP 200 (253)
T ss_pred eeeecCCC-EEEEEeCCCCCceeEEEEccCCc
Confidence 99999998 5555554 3443444 4454443
No 408
>PHA03098 kelch-like protein; Provisional
Probab=94.78 E-value=2.1 Score=42.99 Aligned_cols=62 Identities=13% Similarity=0.189 Sum_probs=32.4
Q ss_pred CCCEEEEEeCCC------cEEEEeCCCCeeeec--ccCcCCCEEEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCC
Q 010390 119 EDTNILTASGDQ------TIKIWDAEKKKCTGA--LMGHTGSIKSLCSHPTNSDILVSGSRDG-----SFAIWDLRCK 183 (512)
Q Consensus 119 ~~~~l~s~~~dg------~i~iwd~~~~~~~~~--~~~h~~~v~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~ 183 (512)
++..++.||.++ .+..||..+.+.... +....... +++.. ++ .+++.||.++ .+..||..+.
T Consensus 294 ~~~lyv~GG~~~~~~~~~~v~~yd~~~~~W~~~~~~~~~R~~~-~~~~~-~~-~lyv~GG~~~~~~~~~v~~yd~~~~ 368 (534)
T PHA03098 294 NNVIYFIGGMNKNNLSVNSVVSYDTKTKSWNKVPELIYPRKNP-GVTVF-NN-RIYVIGGIYNSISLNTVESWKPGES 368 (534)
T ss_pred CCEEEEECCCcCCCCeeccEEEEeCCCCeeeECCCCCcccccc-eEEEE-CC-EEEEEeCCCCCEecceEEEEcCCCC
Confidence 566667776542 577888877654221 11111112 22222 23 6777777652 4566776544
No 409
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=94.66 E-value=4.2 Score=38.76 Aligned_cols=149 Identities=14% Similarity=0.180 Sum_probs=83.1
Q ss_pred CCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec-----CCCEEEEEeCCCcEEEEeCC
Q 010390 64 NSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK-----EDTNILTASGDQTIKIWDAE 138 (512)
Q Consensus 64 ~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~-----~~~~l~s~~~dg~i~iwd~~ 138 (512)
+.+.|++|+..|.++||+........ .. +.--..-+.+|..+..-+ +...||. -.-..+.||.+.
T Consensus 36 ~~d~IivGS~~G~LrIy~P~~~~~~~--------~~-lllE~~l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~ 105 (418)
T PF14727_consen 36 GSDKIIVGSYSGILRIYDPSGNEFQP--------ED-LLLETQLKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVS 105 (418)
T ss_pred CccEEEEeccccEEEEEccCCCCCCC--------cc-EEEEEecCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEE
Confidence 44699999999999999985433210 01 111123346788777542 2223333 455677788762
Q ss_pred C--Ce-------eeecccCcC--CCEEEEEeeCCC----CCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccc
Q 010390 139 K--KK-------CTGALMGHT--GSIKSLCSHPTN----SDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKG 203 (512)
Q Consensus 139 ~--~~-------~~~~~~~h~--~~v~~l~~~~~~----~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~ 203 (512)
. |. .+..+..|. .....+++-|-| ..+++.-+.||.+.+++-+.-....
T Consensus 106 ~~~g~~~~g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~~~~IcVQS~DG~L~~feqe~~~f~~---------------- 169 (418)
T PF14727_consen 106 LVDGTVEHGNQYQLELIYEHSLQRTAYNMCCGPFGGVKGRDFICVQSMDGSLSFFEQESFAFSR---------------- 169 (418)
T ss_pred ecCCCcccCcEEEEEEEEEEecccceeEEEEEECCCCCCceEEEEEecCceEEEEeCCcEEEEE----------------
Confidence 1 11 112222232 223334443322 3689999999999999876322100
Q ss_pred cccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390 204 AHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 204 ~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~ 251 (512)
.....--...+.|.+....++++. .+..+..|...
T Consensus 170 ------------~lp~~llPgPl~Y~~~tDsfvt~s-ss~~l~~Yky~ 204 (418)
T PF14727_consen 170 ------------FLPDFLLPGPLCYCPRTDSFVTAS-SSWTLECYKYQ 204 (418)
T ss_pred ------------EcCCCCCCcCeEEeecCCEEEEec-CceeEEEecHH
Confidence 001111234567888777787755 46778887654
No 410
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=94.62 E-value=3 Score=36.82 Aligned_cols=281 Identities=11% Similarity=0.023 Sum_probs=145.4
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD 129 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 129 (512)
.+-+..+.+ .+++...+..+.-++|.|+.+.... .++..+. ..+--+++.. .|++...+..|
T Consensus 86 ~~l~~Dv~v-----se~yvyvad~ssGL~IvDIS~P~sP----------~~~~~ln-t~gyaygv~v--sGn~aYVadld 147 (370)
T COG5276 86 RDLFADVRV-----SEEYVYVADWSSGLRIVDISTPDSP----------TLIGFLN-TDGYAYGVYV--SGNYAYVADLD 147 (370)
T ss_pred hhhhheeEe-----cccEEEEEcCCCceEEEeccCCCCc----------ceecccc-CCceEEEEEe--cCCEEEEeecc
Confidence 344556666 3567777777888999999876421 1122222 1133344443 58888887755
Q ss_pred CcEEEEeCCCCe---eeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccccc
Q 010390 130 QTIKIWDAEKKK---CTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHL 206 (512)
Q Consensus 130 g~i~iwd~~~~~---~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~ 206 (512)
.-+.+.|+.+.+ ....+......-..++.+ | ++-..+..|+-+.+-|+.+.........
T Consensus 148 dgfLivdvsdpssP~lagrya~~~~d~~~v~IS--G-n~AYvA~~d~GL~ivDVSnp~sPvli~~--------------- 209 (370)
T COG5276 148 DGFLIVDVSDPSSPQLAGRYALPGGDTHDVAIS--G-NYAYVAWRDGGLTIVDVSNPHSPVLIGS--------------- 209 (370)
T ss_pred CcEEEEECCCCCCceeeeeeccCCCCceeEEEe--c-CeEEEEEeCCCeEEEEccCCCCCeEEEE---------------
Confidence 557788987653 334444444555667776 4 6777888899999999987654431100
Q ss_pred ccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC
Q 010390 207 LSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG 286 (512)
Q Consensus 207 ~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~ 286 (512)
......+.++..+++..+++. . +--+.+-|..+.+.......-. ......++.+.. .+
T Consensus 210 ----------~n~g~g~~sv~vsdnr~y~vv-y--~egvlivd~s~~ssp~~~gsye-------t~~p~~~s~v~V--s~ 267 (370)
T COG5276 210 ----------YNTGPGTYSVSVSDNRAYLVV-Y--DEGVLIVDVSGPSSPTVFGSYE-------TSNPVSISTVPV--SG 267 (370)
T ss_pred ----------EecCCceEEEEecCCeeEEEE-c--ccceEEEecCCCCCceEeeccc-------cCCcccccceec--cc
Confidence 011225666666666555544 2 4456677777665443221100 000111222233 45
Q ss_pred CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCe
Q 010390 287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEV 366 (512)
Q Consensus 287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v 366 (512)
++......+.-+.+-|+.+.....+.. +-............-+.++..+..+ ...+-+....+.+ -...+....+
T Consensus 268 ~~~Yvadga~gl~~idisnp~spfl~s---s~~t~g~~a~gi~ay~~y~yiadkn-~g~vV~~s~~s~m-~~~~g~~ti~ 342 (370)
T COG5276 268 EYAYVADGAKGLPIIDISNPPSPFLSS---SLDTAGYQAAGIRAYGNYNYIADKN-TGAVVDASPPSMM-DKRPGRPTIG 342 (370)
T ss_pred ceeeeeccccCceeEeccCCCCCchhc---cccCCCccccceEEecCeeEeccCC-ceEEEeCCChhhc-ccccCcceEe
Confidence 666676667677777775533222111 1000000000111223444444433 3444444433221 1111222233
Q ss_pred EEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 367 TAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 367 ~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
.+.+.+-+. +.+.+...++-+.+|+..
T Consensus 343 ~s~~v~~~~-q~~y~~d~~~gl~i~~~~ 369 (370)
T COG5276 343 QSCDVSVDT-QIIYSTDYNGGLSIIEYL 369 (370)
T ss_pred eecceEEEe-eEEEEeecCCCEEEEEec
Confidence 444444445 577788888889999853
No 411
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=94.50 E-value=1.7 Score=44.63 Aligned_cols=76 Identities=17% Similarity=0.288 Sum_probs=52.8
Q ss_pred eeEEEEEECCCCCEEEEecCCCCEEEEecCC----------CCCCC--ce--------eccccCCeEEEEeCCCC--CCe
Q 010390 321 SFYVKSEICPNASHILSGSSDGNAYVWQVNK----------PQADP--IK--------LKSHDGEVTAVNWCPNE--AGK 378 (512)
Q Consensus 321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~----------~~~~~--~~--------~~~h~~~v~~v~~~~~~--~~~ 378 (512)
-.|..+.++++|.+|+..|..| |.|-.+.. ++..+ .. ...+...|..+.|+|.+ ...
T Consensus 85 f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~~ 163 (717)
T PF10168_consen 85 FEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDSH 163 (717)
T ss_pred eeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCCe
Confidence 3567789999999999888766 55555432 11100 11 12334589999999974 368
Q ss_pred EEEEeCCCcEEEEeCCCCc
Q 010390 379 IVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 379 l~s~~~dg~i~vwd~~~~~ 397 (512)
|+.-..|+++|+||+...+
T Consensus 164 l~vLtsdn~lR~y~~~~~~ 182 (717)
T PF10168_consen 164 LVVLTSDNTLRLYDISDPQ 182 (717)
T ss_pred EEEEecCCEEEEEecCCCC
Confidence 8889999999999997543
No 412
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.44 E-value=1.2 Score=44.59 Aligned_cols=114 Identities=15% Similarity=0.157 Sum_probs=71.1
Q ss_pred EEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeC--CCCCEEEEEecCCeEEE
Q 010390 223 ITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQD--SNGVFLTASCMDHRIYL 300 (512)
Q Consensus 223 v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~~dg~i~i 300 (512)
..-+.-+.-++..++ .+....+.|||.+.+...... .....+.|..+.|. |+++.+++.+..+.|.+
T Consensus 32 ~~li~gss~~k~a~V-~~~~~~LtIWD~~~~~lE~~~----------~f~~~~~I~dLDWtst~d~qsiLaVGf~~~v~l 100 (631)
T PF12234_consen 32 PSLISGSSIKKIAVV-DSSRSELTIWDTRSGVLEYEE----------SFSEDDPIRDLDWTSTPDGQSILAVGFPHHVLL 100 (631)
T ss_pred cceEeecccCcEEEE-ECCCCEEEEEEcCCcEEEEee----------eecCCCceeeceeeecCCCCEEEEEEcCcEEEE
Confidence 333444443443333 545778999999988755432 22345678999885 68898888889999999
Q ss_pred EEccc-------CCCCceEeeeecee-ceeEEEEEECCCCCEEEEecCCCCEEEEec
Q 010390 301 YNVLQ-------LDKGPIQHFSGCRI-ESFYVKSEICPNASHILSGSSDGNAYVWQV 349 (512)
Q Consensus 301 ~d~~~-------~~~~~~~~~~~~~~-~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~ 349 (512)
|--.. ....++..+.-... ...+.+..|.++|.++++.+ +.+.|++-
T Consensus 101 ~~Q~R~dy~~~~p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~sG--Nqlfv~dk 155 (631)
T PF12234_consen 101 YTQLRYDYTNKGPSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGSG--NQLFVFDK 155 (631)
T ss_pred EEccchhhhcCCcccceeEEEEeecCCCCCccceeEecCCeEEEEeC--CEEEEECC
Confidence 86421 11122333322111 23466788999998776654 55888864
No 413
>PHA03098 kelch-like protein; Provisional
Probab=94.40 E-value=2.2 Score=42.92 Aligned_cols=110 Identities=6% Similarity=0.010 Sum_probs=53.6
Q ss_pred CCCEEEEEecC------CeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCC--------CEEEEecC
Q 010390 285 NGVFLTASCMD------HRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDG--------NAYVWQVN 350 (512)
Q Consensus 285 ~~~~l~~~~~d------g~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg--------~i~iw~~~ 350 (512)
++++.+.|+.+ +.+..||..+............... . .+...++..++.|+.++ .+.+||..
T Consensus 389 ~~~iYv~GG~~~~~~~~~~v~~yd~~t~~W~~~~~~p~~r~~---~-~~~~~~~~iyv~GG~~~~~~~~~~~~v~~yd~~ 464 (534)
T PHA03098 389 NNLIYVIGGISKNDELLKTVECFSLNTNKWSKGSPLPISHYG---G-CAIYHDGKIYVIGGISYIDNIKVYNIVESYNPV 464 (534)
T ss_pred CCEEEEECCcCCCCcccceEEEEeCCCCeeeecCCCCccccC---c-eEEEECCEEEEECCccCCCCCcccceEEEecCC
Confidence 56666666632 4578888765433222211111100 1 12223566667776432 27888887
Q ss_pred CCCCCC-ceeccccCCeEEEEeCCCCCCeEEEEeCC-----CcEEEEeCCCCccccc
Q 010390 351 KPQADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDD-----YTVRLWSLENSRCSSM 401 (512)
Q Consensus 351 ~~~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~d-----g~i~vwd~~~~~~~~~ 401 (512)
+.+-.. ..+.........+.+ ++ .+++.||.+ ..+.++|..+.+....
T Consensus 465 ~~~W~~~~~~~~~r~~~~~~~~--~~-~iyv~GG~~~~~~~~~v~~yd~~~~~W~~~ 518 (534)
T PHA03098 465 TNKWTELSSLNFPRINASLCIF--NN-KIYVVGGDKYEYYINEIEVYDDKTNTWTLF 518 (534)
T ss_pred CCceeeCCCCCcccccceEEEE--CC-EEEEEcCCcCCcccceeEEEeCCCCEEEec
Confidence 653211 111111111122223 44 677777754 4678888887765443
No 414
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.36 E-value=3.3 Score=36.34 Aligned_cols=186 Identities=15% Similarity=0.026 Sum_probs=97.4
Q ss_pred CEEEEEeeCCCCCeEEEEeCCC--cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEe
Q 010390 152 SIKSLCSHPTNSDILVSGSRDG--SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYL 229 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~ 229 (512)
-...+.|..++ .++-+.+.-| .|+.+|+.+++.......+. ..--..++..
T Consensus 46 FTQGL~~~~~g-~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~--------------------------~~FgEGit~~ 98 (264)
T PF05096_consen 46 FTQGLEFLDDG-TLYESTGLYGQSSLRKVDLETGKVLQSVPLPP--------------------------RYFGEGITIL 98 (264)
T ss_dssp EEEEEEEEETT-EEEEEECSTTEEEEEEEETTTSSEEEEEE-TT--------------------------T--EEEEEEE
T ss_pred cCccEEecCCC-EEEEeCCCCCcEEEEEEECCCCcEEEEEECCc--------------------------cccceeEEEE
Confidence 45678886666 7888888776 78899998876433211110 1112233333
Q ss_pred ecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC
Q 010390 230 KDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG 309 (512)
Q Consensus 230 ~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~ 309 (512)
. ..+.-..-.++...+||..+.+....... . +.-..++ .++..|+.+.....|+++|..+.+..
T Consensus 99 ~--d~l~qLTWk~~~~f~yd~~tl~~~~~~~y---------~---~EGWGLt--~dg~~Li~SDGS~~L~~~dP~~f~~~ 162 (264)
T PF05096_consen 99 G--DKLYQLTWKEGTGFVYDPNTLKKIGTFPY---------P---GEGWGLT--SDGKRLIMSDGSSRLYFLDPETFKEV 162 (264)
T ss_dssp T--TEEEEEESSSSEEEEEETTTTEEEEEEE----------S---SS--EEE--ECSSCEEEE-SSSEEEEE-TTT-SEE
T ss_pred C--CEEEEEEecCCeEEEEccccceEEEEEec---------C---CcceEEE--cCCCEEEEECCccceEEECCcccceE
Confidence 2 23333345789999999998776654321 1 2233444 46778888877889999997654322
Q ss_pred ceEeee-eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee---------------ccccCCeEEEEeCC
Q 010390 310 PIQHFS-GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL---------------KSHDGEVTAVNWCP 373 (512)
Q Consensus 310 ~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~---------------~~h~~~v~~v~~~~ 373 (512)
...... ....-..+.-+.|- +|...|=.=....|...|..+++.. ..+ ....+-.+.|||.|
T Consensus 163 ~~i~V~~~g~pv~~LNELE~i-~G~IyANVW~td~I~~Idp~tG~V~-~~iDls~L~~~~~~~~~~~~~~dVLNGIAyd~ 240 (264)
T PF05096_consen 163 RTIQVTDNGRPVSNLNELEYI-NGKIYANVWQTDRIVRIDPETGKVV-GWIDLSGLRPEVGRDKSRQPDDDVLNGIAYDP 240 (264)
T ss_dssp EEEE-EETTEE---EEEEEEE-TTEEEEEETTSSEEEEEETTT-BEE-EEEE-HHHHHHHTSTTST--TTS-EEEEEEET
T ss_pred EEEEEEECCEECCCcEeEEEE-cCEEEEEeCCCCeEEEEeCCCCeEE-EEEEhhHhhhcccccccccccCCeeEeEeEeC
Confidence 211111 11111123334442 4444443333445666666665431 111 01145689999999
Q ss_pred CCCCeEEEE
Q 010390 374 NEAGKIVTS 382 (512)
Q Consensus 374 ~~~~~l~s~ 382 (512)
....+++||
T Consensus 241 ~~~~l~vTG 249 (264)
T PF05096_consen 241 ETDRLFVTG 249 (264)
T ss_dssp TTTEEEEEE
T ss_pred CCCEEEEEe
Confidence 885666666
No 415
>smart00036 CNH Domain found in NIK1-like kinases, mouse citron and yeast ROM1, ROM2. Unpublished observations.
Probab=94.32 E-value=4.1 Score=37.25 Aligned_cols=61 Identities=8% Similarity=0.114 Sum_probs=40.7
Q ss_pred CCEEEEEeCCCcEEEEeCCC--CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCC
Q 010390 120 DTNILTASGDQTIKIWDAEK--KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCK 183 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~ 183 (512)
+++|+.|+++| +.+-++.. ++..+.+ +...|+++...+..+-+++.++....++++++..-
T Consensus 13 ~~~lL~GTe~G-ly~~~~~~~~~~~~kl~--~~~~v~q~~v~~~~~lLi~Lsgk~~~L~~~~L~~L 75 (302)
T smart00036 13 GKWLLVGTEEG-LYVLNISDQPGTLEKLI--GRRSVTQIWVLEENNVLLMISGKKPQLYSHPLSAL 75 (302)
T ss_pred CcEEEEEeCCc-eEEEEcccCCCCeEEec--CcCceEEEEEEhhhCEEEEEeCCcceEEEEEHHHh
Confidence 36899999999 66666654 2333333 45689999999877334444444455999998543
No 416
>PF05096 Glu_cyclase_2: Glutamine cyclotransferase; InterPro: IPR007788 This family of enzymes 2.3.2.5 from EC catalyse the cyclization of free L-glutamine and N-terminal glutaminyl residues in proteins to pyroglutamate (5-oxoproline) and pyroglutamyl residues respectively []. This family includes plant and bacterial enzymes and seems unrelated to the mammalian enzymes.; PDB: 3NOK_B 2FAW_A 2IWA_A 3NOM_A 3NOL_A 3MBR_X.
Probab=94.27 E-value=0.93 Score=39.68 Aligned_cols=115 Identities=10% Similarity=-0.004 Sum_probs=67.4
Q ss_pred cEEEEEEecCCCEEEEEeCCC--cEEEEeCCCCeeeecccCc-CCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 110 AIFDLCWIKEDTNILTASGDQ--TIKIWDAEKKKCTGALMGH-TGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg--~i~iwd~~~~~~~~~~~~h-~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
-.-.+.|..++.++-+.+.-| .|+.+|+.+++......-. .---..++...+ .+..-.-.++...+||..+.+..
T Consensus 46 FTQGL~~~~~g~LyESTG~yG~S~l~~~d~~tg~~~~~~~l~~~~FgEGit~~~d--~l~qLTWk~~~~f~yd~~tl~~~ 123 (264)
T PF05096_consen 46 FTQGLEFLDDGTLYESTGLYGQSSLRKVDLETGKVLQSVPLPPRYFGEGITILGD--KLYQLTWKEGTGFVYDPNTLKKI 123 (264)
T ss_dssp EEEEEEEEETTEEEEEECSTTEEEEEEEETTTSSEEEEEE-TTT--EEEEEEETT--EEEEEESSSSEEEEEETTTTEEE
T ss_pred cCccEEecCCCEEEEeCCCCCcEEEEEEECCCCcEEEEEECCccccceeEEEECC--EEEEEEecCCeEEEEccccceEE
Confidence 345678877887777877766 7999999999876544321 122334455432 45555567889999998754432
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcccee
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQI 257 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~ 257 (512)
... .....=..++ .++..++.+.+ ...+.++|..+.+...
T Consensus 124 ~~~----------------------------~y~~EGWGLt--~dg~~Li~SDG-S~~L~~~dP~~f~~~~ 163 (264)
T PF05096_consen 124 GTF----------------------------PYPGEGWGLT--SDGKRLIMSDG-SSRLYFLDPETFKEVR 163 (264)
T ss_dssp EEE----------------------------E-SSS--EEE--ECSSCEEEE-S-SSEEEEE-TTT-SEEE
T ss_pred EEE----------------------------ecCCcceEEE--cCCCEEEEECC-ccceEEECCcccceEE
Confidence 211 1122344455 56667776443 5689999987765543
No 417
>PF12234 Rav1p_C: RAVE protein 1 C terminal; InterPro: IPR022033 This domain family is found in eukaryotes, and is typically between 621 and 644 amino acids in length. This family is the C-terminal region of the protein RAVE (regulator of the ATPase of vacuolar and endosomal membranes). Rav1p is involved in regulating the glucose dependent assembly and disassembly of vacuolar ATPase V1 and V0 subunits.
Probab=94.09 E-value=2.1 Score=42.83 Aligned_cols=123 Identities=10% Similarity=0.097 Sum_probs=71.2
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeeccc-CcCCCEEEEEee--CCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALM-GHTGSIKSLCSH--PTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~-~h~~~v~~l~~~--~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
...-+.-+.-++.-++-+....+.|||...+.....-. ...+.|..+.|. |++ +.+++.|....|.++.-......
T Consensus 31 ~~~li~gss~~k~a~V~~~~~~LtIWD~~~~~lE~~~~f~~~~~I~dLDWtst~d~-qsiLaVGf~~~v~l~~Q~R~dy~ 109 (631)
T PF12234_consen 31 NPSLISGSSIKKIAVVDSSRSELTIWDTRSGVLEYEESFSEDDPIRDLDWTSTPDG-QSILAVGFPHHVLLYTQLRYDYT 109 (631)
T ss_pred CcceEeecccCcEEEEECCCCEEEEEEcCCcEEEEeeeecCCCceeeceeeecCCC-CEEEEEEcCcEEEEEEccchhhh
Confidence 33334444444443444445679999998886433222 346789999985 455 77888888889999864321111
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~ 251 (512)
... ......+.+.....-..+|.+..|.++|..++.+ +..+.|+|-.
T Consensus 110 ~~~---------------p~w~~i~~i~i~~~T~h~Igds~Wl~~G~LvV~s---GNqlfv~dk~ 156 (631)
T PF12234_consen 110 NKG---------------PSWAPIRKIDISSHTPHPIGDSIWLKDGTLVVGS---GNQLFVFDKW 156 (631)
T ss_pred cCC---------------cccceeEEEEeecCCCCCccceeEecCCeEEEEe---CCEEEEECCC
Confidence 000 0000111111111122578999999999888764 4678888754
No 418
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=93.87 E-value=0.0099 Score=55.15 Aligned_cols=151 Identities=15% Similarity=0.194 Sum_probs=101.5
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE-EEecCCeEEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT-ASCMDHRIYL 300 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i 300 (512)
......|-+.+..++.++ .+..+..||-...... .....+....|+|+.++..++ .+-..+.+.+
T Consensus 36 ~pi~~~w~~e~~nlavac-a~tiv~~YD~agq~~l-------------e~n~tg~aldm~wDkegdvlavlAek~~piyl 101 (615)
T KOG2247|consen 36 GPIIHRWRPEGHNLAVAC-ANTIVIYYDKAGQVIL-------------ELNPTGKALDMAWDKEGDVLAVLAEKTGPIYL 101 (615)
T ss_pred ccceeeEecCCCceehhh-hhhHHHhhhhhcceec-------------ccCCchhHhhhhhccccchhhhhhhcCCCeee
Confidence 444566788888887766 5888888886543322 111223456788888777555 4557789999
Q ss_pred EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEE
Q 010390 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIV 380 (512)
Q Consensus 301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~ 380 (512)
||+.+.....+.. .+...... +.|++.+..++.|...|.+.|++....+.. .....|...+++++|.+.+ +.+
T Consensus 102 wd~n~eytqqLE~-gg~~s~sl---l~wsKg~~el~ig~~~gn~viynhgtsR~i-iv~Gkh~RRgtq~av~lEd--~vi 174 (615)
T KOG2247|consen 102 WDVNSEYTQQLES-GGTSSKSL---LAWSKGTPELVIGNNAGNIVIYNHGTSRRI-IVMGKHQRRGTQIAVTLED--YVI 174 (615)
T ss_pred chhhhhhHHHHhc-cCcchHHH---HhhccCCccccccccccceEEEeccchhhh-hhhcccccceeEEEecccc--eee
Confidence 9997643332222 12111121 689999999999999999999998877653 3444499999999999986 677
Q ss_pred EEeCCCcEEEEeC
Q 010390 381 TSSDDYTVRLWSL 393 (512)
Q Consensus 381 s~~~dg~i~vwd~ 393 (512)
.++.|..+.+-..
T Consensus 175 l~dcd~~L~v~~q 187 (615)
T KOG2247|consen 175 LCDCDNTLSVTTQ 187 (615)
T ss_pred ecCcHHHHHHhhh
Confidence 7777766554443
No 419
>PRK10115 protease 2; Provisional
Probab=93.81 E-value=9.5 Score=39.56 Aligned_cols=112 Identities=4% Similarity=-0.040 Sum_probs=64.2
Q ss_pred ceEEEEEecCCCcEEEEeeC-----CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 54 LAVSFCKTSKNSHIFAVSDE-----DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 54 ~~v~~~~~s~~~~~latg~~-----dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
.++....+||||++||.+.. .-.|++-|+.++... ...+.+ .-..++|.+|++.|+....
T Consensus 127 ~~l~~~~~Spdg~~la~~~d~~G~E~~~l~v~d~~tg~~l------------~~~i~~---~~~~~~w~~D~~~~~y~~~ 191 (686)
T PRK10115 127 YTLGGMAITPDNTIMALAEDFLSRRQYGIRFRNLETGNWY------------PELLDN---VEPSFVWANDSWTFYYVRK 191 (686)
T ss_pred EEEeEEEECCCCCEEEEEecCCCcEEEEEEEEECCCCCCC------------CccccC---cceEEEEeeCCCEEEEEEe
Confidence 56666667999999988632 234888888766421 011111 1156999999987775543
Q ss_pred C------CcEEEEeCCCC--eeeecccCcCCCEEEEEeeC-CCCCeEEEEeC---CCcEEEEeCC
Q 010390 129 D------QTIKIWDAEKK--KCTGALMGHTGSIKSLCSHP-TNSDILVSGSR---DGSFAIWDLR 181 (512)
Q Consensus 129 d------g~i~iwd~~~~--~~~~~~~~h~~~v~~l~~~~-~~~~~l~s~~~---dg~i~vwd~~ 181 (512)
+ ..|+.+++.++ +....+........-..+.+ ++ .+++..+. ++.+.+++..
T Consensus 192 ~~~~~~~~~v~~h~lgt~~~~d~lv~~e~~~~~~~~~~~s~d~-~~l~i~~~~~~~~~~~l~~~~ 255 (686)
T PRK10115 192 HPVTLLPYQVWRHTIGTPASQDELVYEEKDDTFYVSLHKTTSK-HYVVIHLASATTSEVLLLDAE 255 (686)
T ss_pred cCCCCCCCEEEEEECCCChhHCeEEEeeCCCCEEEEEEEcCCC-CEEEEEEECCccccEEEEECc
Confidence 2 36788888887 33333443333333223334 55 44433332 3578888854
No 420
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.80 E-value=0.28 Score=29.05 Aligned_cols=32 Identities=25% Similarity=0.408 Sum_probs=27.1
Q ss_pred CCEEEEEeeCCCC--CeEEEEeCCCcEEEEeCCC
Q 010390 151 GSIKSLCSHPTNS--DILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 151 ~~v~~l~~~~~~~--~~l~s~~~dg~i~vwd~~~ 182 (512)
+.|.++.|+|... .+|+-+-.-|.|.++|+++
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4688999998764 6888888889999999985
No 421
>KOG1897 consensus Damage-specific DNA binding complex, subunit DDB1 [Replication, recombination and repair]
Probab=93.61 E-value=11 Score=39.44 Aligned_cols=249 Identities=10% Similarity=0.072 Sum_probs=125.8
Q ss_pred cCCcceEEEEEecCCC-cEEEEe---eCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEE--Eec-CCCE
Q 010390 50 ETPPLAVSFCKTSKNS-HIFAVS---DEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLC--WIK-EDTN 122 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~-~~latg---~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~--~s~-~~~~ 122 (512)
-+||..+.....-.+| ..++|+ ..||+++|..-.-+. +......+.| -..++.+. +.+ -..+
T Consensus 353 LgPI~Dm~Vvd~d~q~q~qivtCsGa~kdgSLRiiRngi~I----------~e~A~i~l~G-ikg~w~lk~~v~~~~d~y 421 (1096)
T KOG1897|consen 353 LGPIVDMCVVDLDRQGQGQIVTCSGAFKDGSLRIIRNGIGI----------DELASIDLPG-IKGMWSLKSMVDENYDNY 421 (1096)
T ss_pred ccceeeEEEEeccccCCceEEEEeCCCCCCcEEEEeccccc----------ceeeEeecCC-ccceeEeeccccccCCcE
Confidence 4577777776543112 244443 578999998643221 1122334444 45667776 444 1235
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccc
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVK 202 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~ 202 (512)
|+.+--+. -++..+...-......+.......+..+.-+.+.|+=... ..||+++-.... .
T Consensus 422 lvlsf~~e-Trvl~i~~e~ee~~~~gf~~~~~Tif~S~i~g~~lvQvTs-~~iRl~ss~~~~--~--------------- 482 (1096)
T KOG1897|consen 422 LVLSFISE-TRVLNISEEVEETEDPGFSTDEQTIFCSTINGNQLVQVTS-NSIRLVSSAGLR--S--------------- 482 (1096)
T ss_pred EEEEeccc-eEEEEEccceEEeccccccccCceEEEEccCCceEEEEec-ccEEEEcchhhh--h---------------
Confidence 65554433 3455543332222223333334444444333333333332 356666543110 0
Q ss_pred ccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe
Q 010390 203 GAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ 282 (512)
Q Consensus 203 ~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~ 282 (512)
.+ ...+.++....+.+...+++++ .++.+...++........ ........|.|+.+
T Consensus 483 ------------~W-~~p~~~ti~~~~~n~sqVvvA~-~~~~l~y~~i~~~~l~e~----------~~~~~e~evaCLDi 538 (1096)
T KOG1897|consen 483 ------------EW-RPPGKITIGVVSANASQVVVAG-GGLALFYLEIEDGGLREV----------SHKEFEYEVACLDI 538 (1096)
T ss_pred ------------cc-cCCCceEEEEEeecceEEEEec-CccEEEEEEeeccceeee----------eeheecceeEEEec
Confidence 11 1122444445555555676666 367777777765552211 22333466999999
Q ss_pred CCCC------CEEEEEecCCeEEEEEccc-CCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 283 DSNG------VFLTASCMDHRIYLYNVLQ-LDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 283 ~~~~------~~l~~~~~dg~i~i~d~~~-~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
+|-| +++++|..+..+.+.-... ........+........+.-.++-.|..+|.++..||.+.-|.+...
T Consensus 539 sp~~d~~~~s~~~aVG~Ws~~~~~l~~~pd~~~~~~~~l~~~~iPRSIl~~~~e~d~~yLlvalgdG~l~~fv~d~~ 615 (1096)
T KOG1897|consen 539 SPLGDAPNKSRLLAVGLWSDISMILTFLPDLILITHEQLSGEIIPRSILLTTFEGDIHYLLVALGDGALLYFVLDIN 615 (1096)
T ss_pred ccCCCCCCcceEEEEEeecceEEEEEECCCcceeeeeccCCCccchheeeEEeeccceEEEEEcCCceEEEEEEEcc
Confidence 8742 3788888776655543322 11111111222222233444566677899999999999887766543
No 422
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=93.55 E-value=5.4 Score=42.81 Aligned_cols=175 Identities=11% Similarity=0.109 Sum_probs=96.7
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEee--------CCCCCeEEEEeCCCcEEEE
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH--------PTNSDILVSGSRDGSFAIW 178 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~--------~~~~~~l~s~~~dg~i~vw 178 (512)
|...-..+-+.|.=.+... +-|+.+.+|+.+++.....+.+-...|..+..- |.=.++|+.+. --.|.++
T Consensus 77 ~~~~~~~mGiFpeI~RaWi-TiDn~L~lWny~~~~e~~~~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT-~~ei~il 154 (1311)
T KOG1900|consen 77 NIECKTDMGIFPEIGRAWI-TIDNNLFLWNYESDNELAEYDGLSHTILKVGLVKPKPGVFVPEIQHLLVVAT-PVEIVIL 154 (1311)
T ss_pred CcceeeeeccchhhcceEE-EeCCeEEEEEcCCCCccccccchhhhheeeeeecCCCCcchhhhheeEEecc-cceEEEE
Confidence 4444445555553333332 247889999999987777777777677766542 22212333333 3456666
Q ss_pred eCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEecc--Cccce
Q 010390 179 DLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTR--NLKAQ 256 (512)
Q Consensus 179 d~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~--~~~~~ 256 (512)
-+.-.+....... + ............|.++....+|+.+++ | .|| .+|.+. ....-
T Consensus 155 gV~~~~~~~~~~~--f----------------~~~~~i~~dg~~V~~I~~t~nGRIF~~-G-~dg--~lyEl~Yq~~~gW 212 (1311)
T KOG1900|consen 155 GVSFDEFTGELSI--F----------------NTSFKISVDGVSVNCITYTENGRIFFA-G-RDG--NLYELVYQAEDGW 212 (1311)
T ss_pred EEEeccccCcccc--c----------------ccceeeecCCceEEEEEeccCCcEEEe-e-cCC--CEEEEEEeccCch
Confidence 5432221111000 0 000122233457899997778877764 5 677 444432 11000
Q ss_pred ecc----cCCCc-------cccccc-cccccCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 257 ITQ----AWPHA-------ESSSAK-ETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 257 ~~~----~~~~~-------~~~~~~-~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
... ..... ...... ..+..+|..++++..-..+++-+..|+|.+||+..
T Consensus 213 f~~rc~Kiclt~s~ls~lvPs~~~~~~~~~dpI~qi~ID~SR~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 213 FGSRCRKICLTKSVLSSLVPSLLSVPGSSKDPIRQITIDNSRNILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred hhcccccccCchhHHHHhhhhhhcCCCCCCCcceeeEeccccceeeeeccCceEEEEEccC
Confidence 000 00000 001112 25567899999999889999999999999999865
No 423
>KOG1916 consensus Nuclear protein, contains WD40 repeats [General function prediction only]
Probab=93.53 E-value=0.089 Score=52.87 Aligned_cols=124 Identities=9% Similarity=0.103 Sum_probs=71.1
Q ss_pred cCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec---CCCE
Q 010390 46 HHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK---EDTN 122 (512)
Q Consensus 46 ~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~---~~~~ 122 (512)
.+|+.+.|..+.|.. -+-..++ -.-|.+.|||++--+...++ .-.+.....-...+.-+.|.| +..+
T Consensus 128 ~kgf~G~v~dl~fah--~~~pk~~--~~vg~lfVy~vd~l~G~iq~------~l~v~~~~p~gs~~~~V~wcp~~~~~~~ 197 (1283)
T KOG1916|consen 128 AKGFPGGVGDLQFAH--TKCPKGR--RLVGELFVYDVDVLQGEIQP------QLEVTPITPYGSDPQLVSWCPIAVNKVY 197 (1283)
T ss_pred HhcCCCCcccccccc--cCChHHH--HHhhhhheeehHhhcccccc------ceEEeecCcCCCCcceeeecccccccce
Confidence 567888898888842 2222222 34467899997642211111 111222222334445556655 6677
Q ss_pred EEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCC----------CeEEEEeCCCcEEEEeC
Q 010390 123 ILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNS----------DILVSGSRDGSFAIWDL 180 (512)
Q Consensus 123 l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~----------~~l~s~~~dg~i~vwd~ 180 (512)
+..+..+++|++.++++... ..+.+|...+..++|...|- ..|+.++.||.+++|.+
T Consensus 198 ic~~~~~~~i~lL~~~ra~~-~l~rsHs~~~~d~a~~~~g~~~l~~lSpDGtv~a~a~~dG~v~f~Qi 264 (1283)
T KOG1916|consen 198 ICYGLKGGEIRLLNINRALR-SLFRSHSQRVTDMAFFAEGVLKLASLSPDGTVFAWAISDGSVGFYQI 264 (1283)
T ss_pred eeeccCCCceeEeeechHHH-HHHHhcCCCcccHHHHhhchhhheeeCCCCcEEEEeecCCccceeee
Confidence 77888889999887765433 55666888777776644332 45555555555555543
No 424
>PF10313 DUF2415: Uncharacterised protein domain (DUF2415); InterPro: IPR019417 This entry represents a short (30 residues) domain of unknown function found in a family of fungal proteins. It contains a characteristic DLL sequence motif.
Probab=93.47 E-value=0.35 Score=28.65 Aligned_cols=32 Identities=13% Similarity=0.250 Sum_probs=26.7
Q ss_pred CCeEEEEeCCCCC--CeEEEEeCCCcEEEEeCCC
Q 010390 364 GEVTAVNWCPNEA--GKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 364 ~~v~~v~~~~~~~--~~l~s~~~dg~i~vwd~~~ 395 (512)
+.|.++.|+|... .+|+.+-.-|.|.|+|+.+
T Consensus 1 GAvR~~kFsP~~~~~DLL~~~E~~g~vhi~D~R~ 34 (43)
T PF10313_consen 1 GAVRCCKFSPEPGGNDLLAWAEHQGRVHIVDTRS 34 (43)
T ss_pred CCeEEEEeCCCCCcccEEEEEccCCeEEEEEccc
Confidence 4689999998663 5888888889999999985
No 425
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=93.36 E-value=3 Score=35.47 Aligned_cols=120 Identities=17% Similarity=0.082 Sum_probs=73.0
Q ss_pred eeeEeecCCccCC--------cceEEEEEecCCCcEEEE-eeCCCcEEEEE--CCCCCCccccccccccccceecccc--
Q 010390 40 GAVTVEHHGEETP--------PLAVSFCKTSKNSHIFAV-SDEDGYVSLFD--SRRKLPSFACHRENAEKARISDWVA-- 106 (512)
Q Consensus 40 ~~~~~~~~gh~~~--------v~~v~~~~~s~~~~~lat-g~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~-- 106 (512)
|.++.-+.+|.-. .++++| +.+.+.+.. -+.+-.|.-|| ..++.... .+.+..++.
T Consensus 139 g~Ly~~~~~h~v~~i~~~v~IsNgl~W---d~d~K~fY~iDsln~~V~a~dyd~~tG~~sn--------r~~i~dlrk~~ 207 (310)
T KOG4499|consen 139 GELYSWLAGHQVELIWNCVGISNGLAW---DSDAKKFYYIDSLNYEVDAYDYDCPTGDLSN--------RKVIFDLRKSQ 207 (310)
T ss_pred cEEEEeccCCCceeeehhccCCccccc---cccCcEEEEEccCceEEeeeecCCCcccccC--------cceeEEeccCC
Confidence 3555555555422 356777 666665544 45666777787 44443211 111222211
Q ss_pred -CC-CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEe
Q 010390 107 -HQ-NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 107 -h~-~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~ 170 (512)
.. -.--.++...+|.+.++.-..++|...|..+|+.+.++.-....|++.+|--.+-.+|++..
T Consensus 208 ~~e~~~PDGm~ID~eG~L~Va~~ng~~V~~~dp~tGK~L~eiklPt~qitsccFgGkn~d~~yvT~ 273 (310)
T KOG4499|consen 208 PFESLEPDGMTIDTEGNLYVATFNGGTVQKVDPTTGKILLEIKLPTPQITSCCFGGKNLDILYVTT 273 (310)
T ss_pred CcCCCCCCcceEccCCcEEEEEecCcEEEEECCCCCcEEEEEEcCCCceEEEEecCCCccEEEEEe
Confidence 00 01112333457888888888899999999999999999888899999999754324444433
No 426
>PF08728 CRT10: CRT10; InterPro: IPR014839 CRT10 is a transcriptional regulator of ribonucleotide reductase (RNR) genes []. RNR catalyses the rate limiting step in dNTP synthesis. Mutations in CRT10 have been shown to enhance hydroxyurea resistance [].
Probab=93.35 E-value=0.46 Score=47.77 Aligned_cols=128 Identities=10% Similarity=0.112 Sum_probs=79.2
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCcccccccc-------ccccceeccccCCCcEEEEEEe--cCCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHREN-------AEKARISDWVAHQNAIFDLCWI--KEDT 121 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~-------~~~~~~~~~~~h~~~V~~l~~s--~~~~ 121 (512)
..|+-|....+ -+...|+.+..||.|.+|.++.-.......... ...++...+. -...+++++++ ...+
T Consensus 101 HtIN~i~v~~l-g~~EVLl~c~DdG~V~~Yyt~~I~~~i~~~~~~~~~~~~r~~i~P~f~~~-v~~SaWGLdIh~~~~~r 178 (717)
T PF08728_consen 101 HTINFIKVGDL-GGEEVLLLCTDDGDVLAYYTETIIEAIERFSEDNDSGFSRLKIKPFFHLR-VGASAWGLDIHDYKKSR 178 (717)
T ss_pred ceeeEEEeccc-CCeeEEEEEecCCeEEEEEHHHHHHHHHhhccccccccccccCCCCeEee-cCCceeEEEEEecCcce
Confidence 33555544333 345689999999999999764321100000000 0111222222 34589999998 7888
Q ss_pred EEEEEeCCCcEEEEeCCCC--eeee-cccCcCCCEEEEEeeCCC--CC---eEEEEeCCCcEEEEeC
Q 010390 122 NILTASGDQTIKIWDAEKK--KCTG-ALMGHTGSIKSLCSHPTN--SD---ILVSGSRDGSFAIWDL 180 (512)
Q Consensus 122 ~l~s~~~dg~i~iwd~~~~--~~~~-~~~~h~~~v~~l~~~~~~--~~---~l~s~~~dg~i~vwd~ 180 (512)
+||.++....|.||-.... +... .-..|...|-+|+|.++. +. .+++++-.|.+.+|++
T Consensus 179 lIAVSsNs~~VTVFaf~l~~~r~~~~~s~~~~hNIP~VSFl~~~~d~~G~v~v~a~dI~G~v~~~~I 245 (717)
T PF08728_consen 179 LIAVSSNSQEVTVFAFALVDERFYHVPSHQHSHNIPNVSFLDDDLDPNGHVKVVATDISGEVWTFKI 245 (717)
T ss_pred EEEEecCCceEEEEEEeccccccccccccccccCCCeeEeecCCCCCccceEEEEEeccCcEEEEEE
Confidence 8898888888888865442 1111 111256689999998754 22 7888899999999888
No 427
>PF10647 Gmad1: Lipoprotein LpqB beta-propeller domain; InterPro: IPR018910 The Gmad1 domain is found associated with IPR019606 from INTERPRO, in bacterial spore formation. It is predicted to have a beta-propeller fold and to have a passive binding role rather than a catalytic function owing to the low number of conserved hydrophilic residues.
Probab=93.28 E-value=5.6 Score=35.29 Aligned_cols=113 Identities=14% Similarity=0.107 Sum_probs=64.8
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEe-ccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe---cCCe
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWD-TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC---MDHR 297 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd-~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~---~dg~ 297 (512)
.+..-.|.+++...++.. .+....++. ...+....... ........|..+.++|||..++... .++.
T Consensus 67 ~l~~PS~d~~g~~W~v~~-~~~~~~~~~~~~~g~~~~~~v--------~~~~~~~~I~~l~vSpDG~RvA~v~~~~~~~~ 137 (253)
T PF10647_consen 67 SLTRPSWDPDGWVWTVDD-GSGGVRVVRDSASGTGEPVEV--------DWPGLRGRITALRVSPDGTRVAVVVEDGGGGR 137 (253)
T ss_pred ccccccccCCCCEEEEEc-CCCceEEEEecCCCcceeEEe--------cccccCCceEEEEECCCCcEEEEEEecCCCCe
Confidence 667778888866665533 355555553 22222221110 1111111799999999999888765 3578
Q ss_pred EEEEEcccCCCC-ceEeeee----ceeceeEEEEEECCCCCEEEEecCCCC
Q 010390 298 IYLYNVLQLDKG-PIQHFSG----CRIESFYVKSEICPNASHILSGSSDGN 343 (512)
Q Consensus 298 i~i~d~~~~~~~-~~~~~~~----~~~~~~~~~~~~s~~~~~l~~g~~dg~ 343 (512)
|.+--+...... +...... ......+..++|.+++.+++.+...+.
T Consensus 138 v~va~V~r~~~g~~~~l~~~~~~~~~~~~~v~~v~W~~~~~L~V~~~~~~~ 188 (253)
T PF10647_consen 138 VYVAGVVRDGDGVPRRLTGPRRVAPPLLSDVTDVAWSDDSTLVVLGRSAGG 188 (253)
T ss_pred EEEEEEEeCCCCCcceeccceEecccccCcceeeeecCCCEEEEEeCCCCC
Confidence 888776543333 1111111 111345778999999998877665443
No 428
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=93.24 E-value=1.5 Score=41.63 Aligned_cols=147 Identities=10% Similarity=0.063 Sum_probs=84.5
Q ss_pred EeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC-------CEEEEEecCCeEEE
Q 010390 228 YLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG-------VFLTASCMDHRIYL 300 (512)
Q Consensus 228 ~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~-------~~l~~~~~dg~i~i 300 (512)
...+...++..|.....++--|+..++.+.. ...+.. + -+.+.|+. ..-++|-++..|.-
T Consensus 475 h~~dssli~~dg~~~~kLykmDIErGkvvee-----------W~~~dd-v-vVqy~p~~kf~qmt~eqtlvGlS~~svFr 541 (776)
T COG5167 475 HDNDSSLIYLDGGERDKLYKMDIERGKVVEE-----------WDLKDD-V-VVQYNPYFKFQQMTDEQTLVGLSDYSVFR 541 (776)
T ss_pred ecCCcceEEecCCCcccceeeecccceeeeE-----------eecCCc-c-eeecCCchhHHhcCccceEEeecccceEE
Confidence 3445566666666666777777777766542 222221 2 35555532 22345556666766
Q ss_pred EEcccCCCCceEeeeeceeceeEEEEEEC----CCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCC
Q 010390 301 YNVLQLDKGPIQHFSGCRIESFYVKSEIC----PNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEA 376 (512)
Q Consensus 301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s----~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~ 376 (512)
.|.+-... .+..... ..+.+.-.|+ ....++|+|+..|-|++||--.... ...+.+....|..+..+.+|
T Consensus 542 IDPR~~gN-Ki~v~es---KdY~tKn~Fss~~tTesGyIa~as~kGDirLyDRig~rA-KtalP~lG~aIk~idvta~G- 615 (776)
T COG5167 542 IDPRARGN-KIKVVES---KDYKTKNKFSSGMTTESGYIAAASRKGDIRLYDRIGKRA-KTALPGLGDAIKHIDVTANG- 615 (776)
T ss_pred ecccccCC-ceeeeee---hhccccccccccccccCceEEEecCCCceeeehhhcchh-hhcCcccccceeeeEeecCC-
Confidence 67544221 1111111 1122222333 3456999999999999999755443 34566777899999999999
Q ss_pred CeEEEEeCCCcEEEEeCC
Q 010390 377 GKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 377 ~~l~s~~~dg~i~vwd~~ 394 (512)
.++++.+. ..+.+-|+.
T Consensus 616 k~ilaTCk-~yllL~d~~ 632 (776)
T COG5167 616 KHILATCK-NYLLLTDVP 632 (776)
T ss_pred cEEEEeec-ceEEEEecc
Confidence 45444443 356666654
No 429
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=93.04 E-value=2.7 Score=35.43 Aligned_cols=107 Identities=10% Similarity=0.170 Sum_probs=65.1
Q ss_pred CEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCC------CCEEEE---ecCC-C-CCC
Q 010390 287 VFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSD------GNAYVW---QVNK-P-QAD 355 (512)
Q Consensus 287 ~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~d------g~i~iw---~~~~-~-~~~ 355 (512)
..|+.+...+.|.+|++..........+... +.+..+.++..|++|++--.+ ..+|+| +... . ...
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv---~~V~~l~y~~~GDYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~v 105 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV---GRVLQLVYSEAGDYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSPV 105 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch---hheeEEEeccccceEEEEEeecCCccceEEEEEEEhhhhcccCCcE
Confidence 4555556778899999985555555555443 567789999999999985332 246665 2221 1 110
Q ss_pred Cceecc---------------------ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCcc
Q 010390 356 PIKLKS---------------------HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRC 398 (512)
Q Consensus 356 ~~~~~~---------------------h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 398 (512)
...+.| -..++.+++..|-. .-|+.|+ ++++.+|.+..+..
T Consensus 106 ~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~t-G~LlVg~-~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 106 RVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVT-GNLLVGC-GNKLVLFTLKYQTI 167 (215)
T ss_pred EEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCC-CCEEEEc-CCEEEEEEEEEEEE
Confidence 111112 23467788888876 3455554 35799998876543
No 430
>KOG4499 consensus Ca2+-binding protein Regucalcin/SMP30 [Inorganic ion transport and metabolism; Signal transduction mechanisms]
Probab=92.84 E-value=5.5 Score=33.96 Aligned_cols=103 Identities=7% Similarity=-0.059 Sum_probs=59.6
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEe--ccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWD--TRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd--~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
.-+.++|+.+.+.+...-+.+-.|.-|| ..++........-.... ...........++++.+|++.++.-..++|.
T Consensus 159 IsNgl~Wd~d~K~fY~iDsln~~V~a~dyd~~tG~~snr~~i~dlrk--~~~~e~~~PDGm~ID~eG~L~Va~~ng~~V~ 236 (310)
T KOG4499|consen 159 ISNGLAWDSDAKKFYYIDSLNYEVDAYDYDCPTGDLSNRKVIFDLRK--SQPFESLEPDGMTIDTEGNLYVATFNGGTVQ 236 (310)
T ss_pred CCccccccccCcEEEEEccCceEEeeeecCCCcccccCcceeEEecc--CCCcCCCCCCcceEccCCcEEEEEecCcEEE
Confidence 3467889888888888777788887787 44443221100000000 0000111233466677888888888899999
Q ss_pred EEEcccCCCCceEeeeeceeceeEEEEEECC
Q 010390 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICP 330 (512)
Q Consensus 300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~ 330 (512)
..|..+++......+. ...+++++|--
T Consensus 237 ~~dp~tGK~L~eiklP----t~qitsccFgG 263 (310)
T KOG4499|consen 237 KVDPTTGKILLEIKLP----TPQITSCCFGG 263 (310)
T ss_pred EECCCCCcEEEEEEcC----CCceEEEEecC
Confidence 9998775433333333 23466777753
No 431
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.75 E-value=0.69 Score=39.82 Aligned_cols=72 Identities=26% Similarity=0.247 Sum_probs=53.6
Q ss_pred ECCCCCEEEEecCCCCEEEEecCCCCCCCce------ec-------cccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCC
Q 010390 328 ICPNASHILSGSSDGNAYVWQVNKPQADPIK------LK-------SHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLE 394 (512)
Q Consensus 328 ~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~------~~-------~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~ 394 (512)
+..++++|++-+.+|.+++||+.+.+..... +. .....|..+.++.+| .-+++-+ +|..+.|+.+
T Consensus 18 l~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~Si~pll~~~~~~~~~~~~~i~~~~lt~~G-~PiV~ls-ng~~y~y~~~ 95 (219)
T PF07569_consen 18 LECNGSYLLAITSSGLLYVWNLKKGKAVLPPVSIAPLLNSSPVSDKSSSPNITSCSLTSNG-VPIVTLS-NGDSYSYSPD 95 (219)
T ss_pred EEeCCCEEEEEeCCCeEEEEECCCCeeccCCccHHHHhcccccccCCCCCcEEEEEEcCCC-CEEEEEe-CCCEEEeccc
Confidence 4467889999999999999999987653322 22 355678999999888 6666655 5789999988
Q ss_pred CCccccc
Q 010390 395 NSRCSSM 401 (512)
Q Consensus 395 ~~~~~~~ 401 (512)
-+.-+..
T Consensus 96 L~~W~~v 102 (219)
T PF07569_consen 96 LGCWIRV 102 (219)
T ss_pred cceeEEe
Confidence 7665554
No 432
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.68 E-value=3 Score=39.52 Aligned_cols=148 Identities=7% Similarity=-0.020 Sum_probs=74.9
Q ss_pred cEEEEEEeecCCEEEEEe----------ecCC-eEEEEeccCcc--ceecccCCCccccccccccccCeeEEEeCCCCCE
Q 010390 222 SITSVLYLKDEVSIATAS----------AVNS-IVKFWDTRNLK--AQITQAWPHAESSSAKETRLHGISSLSQDSNGVF 288 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g----------~~dg-~i~iwd~~~~~--~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~ 288 (512)
....|+|.++|+.+++.. ...+ .|.+++-.++. ..... .+.........+++.+++
T Consensus 15 ~P~~ia~d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~~d~~~---------vfa~~l~~p~Gi~~~~~G-- 83 (367)
T TIGR02604 15 NPIAVCFDERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGKYDKSN---------VFAEELSMVTGLAVAVGG-- 83 (367)
T ss_pred CCceeeECCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCCcceeE---------EeecCCCCccceeEecCC--
Confidence 577899999999777642 1123 67777644322 11100 111222346788998888
Q ss_pred EEEEecCCeEEEEEcccCC--C-CceEeeeece-----eceeEEEEEECCCCCEEEEecCC-------------------
Q 010390 289 LTASCMDHRIYLYNVLQLD--K-GPIQHFSGCR-----IESFYVKSEICPNASHILSGSSD------------------- 341 (512)
Q Consensus 289 l~~~~~dg~i~i~d~~~~~--~-~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~~d------------------- 341 (512)
|++++.....++.|..... . .....+.+.. .......++|.|||.+.++-+..
T Consensus 84 lyV~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG~LYv~~G~~~~~~~~~~~~~~~~~~~~~ 163 (367)
T TIGR02604 84 VYVATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDGWLYFNHGNTLASKVTRPGTSDESRQGLG 163 (367)
T ss_pred EEEeCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCCCEEEecccCCCceeccCCCccCcccccC
Confidence 4444444333343442211 0 1111112111 12335568999999876654421
Q ss_pred CCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEe
Q 010390 342 GNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSS 383 (512)
Q Consensus 342 g~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~ 383 (512)
|.|.-++..+... ..+...-.....++|++++ .++++-.
T Consensus 164 g~i~r~~pdg~~~--e~~a~G~rnp~Gl~~d~~G-~l~~tdn 202 (367)
T TIGR02604 164 GGLFRYNPDGGKL--RVVAHGFQNPYGHSVDSWG-DVFFCDN 202 (367)
T ss_pred ceEEEEecCCCeE--EEEecCcCCCccceECCCC-CEEEEcc
Confidence 3344444443332 2222112345789999988 6766544
No 433
>PF14870 PSII_BNR: Photosynthesis system II assembly factor YCF48; PDB: 2XBG_A.
Probab=92.66 E-value=7.7 Score=35.24 Aligned_cols=154 Identities=13% Similarity=0.073 Sum_probs=74.5
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
...+..+...+++.++++ +.......-||--...-.. ........|.+|.|.+++.+.+.+ ..|.|+
T Consensus 144 ~gs~~~~~r~~dG~~vav-s~~G~~~~s~~~G~~~w~~-----------~~r~~~~riq~~gf~~~~~lw~~~-~Gg~~~ 210 (302)
T PF14870_consen 144 SGSINDITRSSDGRYVAV-SSRGNFYSSWDPGQTTWQP-----------HNRNSSRRIQSMGFSPDGNLWMLA-RGGQIQ 210 (302)
T ss_dssp ---EEEEEE-TTS-EEEE-ETTSSEEEEE-TT-SS-EE-----------EE--SSS-EEEEEE-TTS-EEEEE-TTTEEE
T ss_pred cceeEeEEECCCCcEEEE-ECcccEEEEecCCCccceE-----------EccCccceehhceecCCCCEEEEe-CCcEEE
Confidence 357888888999998877 4333344566644221111 112233569999999998766655 888888
Q ss_pred EEEcccCCCCceEeeeeceece-eEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec---cccCCeEEEEeCCCC
Q 010390 300 LYNVLQLDKGPIQHFSGCRIES-FYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK---SHDGEVTAVNWCPNE 375 (512)
Q Consensus 300 i~d~~~~~~~~~~~~~~~~~~~-~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~---~h~~~v~~v~~~~~~ 375 (512)
.=+.......-........... .+..++|.+++...++|+. |.+ +...+.++. ..... .-...++.|.|.++.
T Consensus 211 ~s~~~~~~~~w~~~~~~~~~~~~~~ld~a~~~~~~~wa~gg~-G~l-~~S~DgGkt-W~~~~~~~~~~~n~~~i~f~~~~ 287 (302)
T PF14870_consen 211 FSDDPDDGETWSEPIIPIKTNGYGILDLAYRPPNEIWAVGGS-GTL-LVSTDGGKT-WQKDRVGENVPSNLYRIVFVNPD 287 (302)
T ss_dssp EEE-TTEEEEE---B-TTSS--S-EEEEEESSSS-EEEEEST-T-E-EEESSTTSS--EE-GGGTTSSS---EEEEEETT
T ss_pred EccCCCCccccccccCCcccCceeeEEEEecCCCCEEEEeCC-ccE-EEeCCCCcc-ceECccccCCCCceEEEEEcCCC
Confidence 8872110000000011111122 3678999999888887764 433 344444443 22221 224468888887654
Q ss_pred CCeEEEEeCCCcEEEE
Q 010390 376 AGKIVTSSDDYTVRLW 391 (512)
Q Consensus 376 ~~~l~s~~~dg~i~vw 391 (512)
.-...+.||.|.-|
T Consensus 288 --~gf~lG~~G~ll~~ 301 (302)
T PF14870_consen 288 --KGFVLGQDGVLLRY 301 (302)
T ss_dssp --EEEEE-STTEEEEE
T ss_pred --ceEEECCCcEEEEe
Confidence 55566678887655
No 434
>PF07995 GSDH: Glucose / Sorbosone dehydrogenase; InterPro: IPR012938 Proteins containing this domain are thought to be glucose/sorbosone dehydrogenases. The best characterised of these proteins is soluble glucose dehydrogenase (P13650 from SWISSPROT) from Acinetobacter calcoaceticus, which oxidises glucose to gluconolactone. The enzyme is a calcium-dependent homodimer which uses PQQ as a cofactor [].; GO: 0016901 oxidoreductase activity, acting on the CH-OH group of donors, quinone or similar compound as acceptor, 0048038 quinone binding, 0005975 carbohydrate metabolic process; PDB: 2ISM_A 2WG3_D 3HO5_A 3HO4_A 3HO3_A 2WFT_A 2WG4_B 2WFX_B 1CRU_A 1CQ1_B ....
Probab=92.52 E-value=6.7 Score=36.47 Aligned_cols=112 Identities=10% Similarity=0.091 Sum_probs=56.9
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEeccCcc-ceecccCCCccccccccccccCeeEEEeCCC---CCEEEEEec-C-
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTRNLK-AQITQAWPHAESSSAKETRLHGISSLSQDSN---GVFLTASCM-D- 295 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~---~~~l~~~~~-d- 295 (512)
..++|+|.|++..+++ ...|.|.+++..... ...... +. ...........++++|+ ..+|++... .
T Consensus 3 ~P~~~a~~pdG~l~v~--e~~G~i~~~~~~g~~~~~v~~~-~~-----v~~~~~~gllgia~~p~f~~n~~lYv~~t~~~ 74 (331)
T PF07995_consen 3 NPRSMAFLPDGRLLVA--ERSGRIWVVDKDGSLKTPVADL-PE-----VFADGERGLLGIAFHPDFASNGYLYVYYTNAD 74 (331)
T ss_dssp SEEEEEEETTSCEEEE--ETTTEEEEEETTTEECEEEEE--TT-----TBTSTTBSEEEEEE-TTCCCC-EEEEEEEEE-
T ss_pred CceEEEEeCCCcEEEE--eCCceEEEEeCCCcCcceeccc-cc-----ccccccCCcccceeccccCCCCEEEEEEEccc
Confidence 4689999999877664 369999999933322 111110 00 23344567899999994 233333332 1
Q ss_pred -------CeEEEEEcccCCCC------ceEeeee-ceeceeEEEEEECCCCCEEEEecCC
Q 010390 296 -------HRIYLYNVLQLDKG------PIQHFSG-CRIESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 296 -------g~i~i~d~~~~~~~------~~~~~~~-~~~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
..|.-|........ .+..... .........++|.|||.+.++.+..
T Consensus 75 ~~~~~~~~~v~r~~~~~~~~~~~~~~~l~~~~p~~~~~~H~g~~l~fgpDG~LYvs~G~~ 134 (331)
T PF07995_consen 75 EDGGDNDNRVVRFTLSDGDGDLSSEEVLVTGLPDTSSGNHNGGGLAFGPDGKLYVSVGDG 134 (331)
T ss_dssp TSSSSEEEEEEEEEEETTSCEEEEEEEEEEEEES-CSSSS-EEEEEE-TTSEEEEEEB-T
T ss_pred CCCCCcceeeEEEeccCCccccccceEEEEEeCCCCCCCCCCccccCCCCCcEEEEeCCC
Confidence 24444554332000 1111111 0122334569999999777665543
No 435
>PF07569 Hira: TUP1-like enhancer of split; InterPro: IPR011494 The Hira proteins are found in a range of eukaryotes and are implicated in the assembly of repressive chromatin. These proteins also contain IPR001680 from INTERPRO.; GO: 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus
Probab=92.34 E-value=1.2 Score=38.40 Aligned_cols=74 Identities=9% Similarity=0.082 Sum_probs=50.0
Q ss_pred cCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceecc-----ccCCCcEEEEEEecCCCEEEEEeCCCcEEEEe
Q 010390 62 SKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDW-----VAHQNAIFDLCWIKEDTNILTASGDQTIKIWD 136 (512)
Q Consensus 62 s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~-----~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd 136 (512)
..++++|.+-+.+|.+++||+.+.+...... ...++... ......|..+..+.+|.-|++-+ +|..+.|+
T Consensus 19 ~~~~~~Ll~iT~~G~l~vWnl~~~k~~~~~~----Si~pll~~~~~~~~~~~~~i~~~~lt~~G~PiV~ls-ng~~y~y~ 93 (219)
T PF07569_consen 19 ECNGSYLLAITSSGLLYVWNLKKGKAVLPPV----SIAPLLNSSPVSDKSSSPNITSCSLTSNGVPIVTLS-NGDSYSYS 93 (219)
T ss_pred EeCCCEEEEEeCCCeEEEEECCCCeeccCCc----cHHHHhcccccccCCCCCcEEEEEEcCCCCEEEEEe-CCCEEEec
Confidence 3478899999999999999999876543220 00011100 04567888899988887777654 57788888
Q ss_pred CCCC
Q 010390 137 AEKK 140 (512)
Q Consensus 137 ~~~~ 140 (512)
..-+
T Consensus 94 ~~L~ 97 (219)
T PF07569_consen 94 PDLG 97 (219)
T ss_pred cccc
Confidence 6544
No 436
>TIGR02604 Piru_Ver_Nterm putative membrane-bound dehydrogenase domain. All proteins that score above the trusted cutoff score of 45 to this model are large proteins of either Pirellula sp. 1 or Verrucomicrobium spinosum. These proteins all contain, in addition to this domain, several hundred residues of highly variable sequence, and then a well-conserved C-terminal domain (TIGR02603) that features a putative cytochrome c-type heme binding motif CXXCH. The membrane-bound L-sorbosone dehydrogenase from Acetobacter liquefaciens (Gluconacetobacter liquefaciens) is homologous to this domain but lacks additional sequence regions shared by members of this family and belongs to a different clade of the larger family of homologs. It and its closely related homologs are excluded from the this model by scoring between the trusted (45) and noise (18) cutoffs.
Probab=92.26 E-value=10 Score=35.84 Aligned_cols=105 Identities=13% Similarity=0.201 Sum_probs=55.7
Q ss_pred CCcceEEEEEecCCCcEEEEee-----------CCC-cEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEec
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSD-----------EDG-YVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIK 118 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~-----------~dg-~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~ 118 (512)
..+.+|+| .++|+++++-. ..+ .|.+++-.++.-. ......+.......+.+++.+
T Consensus 14 ~~P~~ia~---d~~G~l~V~e~~~y~~~~~~~~~~~~rI~~l~d~dgdG~---------~d~~~vfa~~l~~p~Gi~~~~ 81 (367)
T TIGR02604 14 RNPIAVCF---DERGRLWVAEGITYSRPAGRQGPLGDRILILEDADGDGK---------YDKSNVFAEELSMVTGLAVAV 81 (367)
T ss_pred CCCceeeE---CCCCCEEEEeCCcCCCCCCCCCCCCCEEEEEEcCCCCCC---------cceeEEeecCCCCccceeEec
Confidence 34567777 99999777642 223 6777764322110 011223333334568899998
Q ss_pred CCCEEEEEeCCCcEEEEeCCCC-----e---eeecccC----cCCCEEEEEeeCCCCCeEEEEe
Q 010390 119 EDTNILTASGDQTIKIWDAEKK-----K---CTGALMG----HTGSIKSLCSHPTNSDILVSGS 170 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~-----~---~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~ 170 (512)
++ .++ +......++.|.... + .+..+.. +......+.|.|++ .+.++-+
T Consensus 82 ~G-lyV-~~~~~i~~~~d~~gdg~ad~~~~~l~~~~~~~~~~~~~~~~~l~~gpDG-~LYv~~G 142 (367)
T TIGR02604 82 GG-VYV-ATPPDILFLRDKDGDDKADGEREVLLSGFGGQINNHHHSLNSLAWGPDG-WLYFNHG 142 (367)
T ss_pred CC-EEE-eCCCeEEEEeCCCCCCCCCCccEEEEEccCCCCCcccccccCceECCCC-CEEEecc
Confidence 88 444 444443334454321 1 1122322 23457789999988 5555444
No 437
>PHA02790 Kelch-like protein; Provisional
Probab=92.19 E-value=8.3 Score=38.09 Aligned_cols=60 Identities=12% Similarity=0.000 Sum_probs=30.9
Q ss_pred CCCEEEEEeCCC-----cEEEEeCCCCeeee--cccCcCCCEEEEEeeCCCCCeEEEEeCCC--cEEEEeCC
Q 010390 119 EDTNILTASGDQ-----TIKIWDAEKKKCTG--ALMGHTGSIKSLCSHPTNSDILVSGSRDG--SFAIWDLR 181 (512)
Q Consensus 119 ~~~~l~s~~~dg-----~i~iwd~~~~~~~~--~~~~h~~~v~~l~~~~~~~~~l~s~~~dg--~i~vwd~~ 181 (512)
++..++.||.++ .+..||..+++... .+....... +++. -++ .+.+.||.++ .+..||..
T Consensus 271 ~~~lyviGG~~~~~~~~~v~~Ydp~~~~W~~~~~m~~~r~~~-~~v~-~~~-~iYviGG~~~~~sve~ydp~ 339 (480)
T PHA02790 271 GEVVYLIGGWMNNEIHNNAIAVNYISNNWIPIPPMNSPRLYA-SGVP-ANN-KLYVVGGLPNPTSVERWFHG 339 (480)
T ss_pred CCEEEEEcCCCCCCcCCeEEEEECCCCEEEECCCCCchhhcc-eEEE-ECC-EEEEECCcCCCCceEEEECC
Confidence 455566777543 46778887765322 222111112 2222 233 6777777543 46667654
No 438
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=91.97 E-value=8.8 Score=34.34 Aligned_cols=239 Identities=8% Similarity=0.047 Sum_probs=123.5
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCC------CC-eeeecccC-----cCCCEEEEEeeCCC-----------CCeE
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAE------KK-KCTGALMG-----HTGSIKSLCSHPTN-----------SDIL 166 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~------~~-~~~~~~~~-----h~~~v~~l~~~~~~-----------~~~l 166 (512)
.-+.|+++|.+.+-++...-+...+||.. .. ..+.++.. .....+.+.|+... ...+
T Consensus 24 N~WGia~~p~~~~WVadngT~~~TlYdg~~~~~~g~~~~L~vtiP~~~~~~~~~~PTGiVfN~~~~F~vt~~g~~~~a~F 103 (336)
T TIGR03118 24 NAWGLSYRPGGPFWVANTGTGTATLYVGNPDTQPLVQDPLVVVIPAPPPLAAEGTPTGQVFNGSDTFVVSGEGITGPSRF 103 (336)
T ss_pred ccceeEecCCCCEEEecCCcceEEeecCCcccccCCccceEEEecCCCCCCCCCCccEEEEeCCCceEEcCCCcccceeE
Confidence 45679999999888888788999999986 11 22333331 22467778887432 1246
Q ss_pred EEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccE-EEEEEe--ecCCEEEEEeecCC
Q 010390 167 VSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI-TSVLYL--KDEVSIATASAVNS 243 (512)
Q Consensus 167 ~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v-~~~~~~--~~~~~l~~~g~~dg 243 (512)
+.+++||+|.-|...-......... .. .-......| ..+++. ..+..|.++--.++
T Consensus 104 if~tEdGTisaW~p~v~~t~~~~~~--~~-------------------~d~s~~gavYkGLAi~~~~~~~~LYaadF~~g 162 (336)
T TIGR03118 104 LFVTEDGTLSGWAPALGTTRMTRAE--IV-------------------VDASQQGNVYKGLAVGPTGGGDYLYAANFRQG 162 (336)
T ss_pred EEEeCCceEEeecCcCCcccccccE--EE-------------------EccCCCcceeeeeEEeecCCCceEEEeccCCC
Confidence 7888999999998542221000000 00 000001112 233333 34677777777889
Q ss_pred eEEEEeccCccceec--ccCCCc----ccc-ccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeee
Q 010390 244 IVKFWDTRNLKAQIT--QAWPHA----ESS-SAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSG 316 (512)
Q Consensus 244 ~i~iwd~~~~~~~~~--~~~~~~----~~~-~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~ 316 (512)
+|.+||-.-.+.... ...+.. .+- ....+..--|+-..-++++..=+.+..-|.|-+||... ..++.+..
T Consensus 163 ~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G---~l~~r~as 239 (336)
T TIGR03118 163 RIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNG---QLLRRVAS 239 (336)
T ss_pred ceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCC---cEEEEecc
Confidence 999998654332211 000000 000 00000001122222233332223333447888888742 34444433
Q ss_pred ceeceeEEEEEECC------CCCEEEEecCCCCEEEEecCCCCCCCceecccc------CCeEEEEeCC
Q 010390 317 CRIESFYVKSEICP------NASHILSGSSDGNAYVWQVNKPQADPIKLKSHD------GEVTAVNWCP 373 (512)
Q Consensus 317 ~~~~~~~~~~~~s~------~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~------~~v~~v~~~~ 373 (512)
...-.....++..| .+.+|+---.||+|..||..+++.. -.+.... ..++.|+|-.
T Consensus 240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~-g~L~~~~G~pi~i~GLWgL~fGn 307 (336)
T TIGR03118 240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQL-GQLLDPDNHPVKVDGLWSLTFGN 307 (336)
T ss_pred CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCcee-eeecCCCCCeEEecCeEEeeeCC
Confidence 22222233455544 4667777667999999999877642 2232222 3467788865
No 439
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=91.73 E-value=5 Score=30.97 Aligned_cols=112 Identities=13% Similarity=0.104 Sum_probs=68.3
Q ss_pred EEEecCCCEEEEEeCCCcEEEEeCCCCe--------eeecccCcCCCEEEEEeeC---C-CCCeEEEEeCCCcEEEEeCC
Q 010390 114 LCWIKEDTNILTASGDQTIKIWDAEKKK--------CTGALMGHTGSIKSLCSHP---T-NSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 114 l~~s~~~~~l~s~~~dg~i~iwd~~~~~--------~~~~~~~h~~~v~~l~~~~---~-~~~~l~s~~~dg~i~vwd~~ 181 (512)
-.|......|+.++.-|.|.|.+..... .+..+. -...|++|+--+ + +...|+.|+. ..|..||+.
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN-in~~italaaG~l~~~~~~D~LliGt~-t~llaYDV~ 81 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN-INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYDVE 81 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE-CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEEcc
Confidence 3455556678888899999999876432 233333 456788876544 2 2356777665 589999998
Q ss_pred CCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCccce
Q 010390 182 CKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNLKAQ 256 (512)
Q Consensus 182 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~~~~ 256 (512)
........ .-...+.++.+-. ....++.+|+ +..|.-||....+..
T Consensus 82 ~N~d~Fyk----------------------------e~~DGvn~i~~g~~~~~~~~l~ivGG-ncsi~Gfd~~G~e~f 130 (136)
T PF14781_consen 82 NNSDLFYK----------------------------EVPDGVNAIVIGKLGDIPSPLVIVGG-NCSIQGFDYEGNEIF 130 (136)
T ss_pred cCchhhhh----------------------------hCccceeEEEEEecCCCCCcEEEECc-eEEEEEeCCCCcEEE
Confidence 76544322 2234566666533 2334555563 677777776654433
No 440
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=91.72 E-value=7.9 Score=36.47 Aligned_cols=173 Identities=14% Similarity=0.086 Sum_probs=96.9
Q ss_pred cccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCee-EEEeCCCCCEEEEEec
Q 010390 216 RKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGIS-SLSQDSNGVFLTASCM 294 (512)
Q Consensus 216 ~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~-~~~~~~~~~~l~~~~~ 294 (512)
+......+..+-..|+++.+.+-. ...+.++++.+............ .....+.|+ .+..-..|.-|++++.
T Consensus 216 L~~~~~~v~qllL~Pdg~~LYv~~--g~~~~v~~L~~r~l~~rkl~~ds-----pg~~~~~Vte~l~lL~Gg~SLLv~~~ 288 (733)
T COG4590 216 LSVPFSDVSQLLLTPDGKTLYVRT--GSELVVALLDKRSLQIRKLVDDS-----PGDSRHQVTEQLYLLSGGFSLLVVHE 288 (733)
T ss_pred cCCCccchHhhEECCCCCEEEEec--CCeEEEEeecccccchhhhhhcC-----CCchHHHHHHHHHHHhCceeEEEEcC
Confidence 344456778888899999998764 36788888776443222110000 000011122 2223345677888888
Q ss_pred CCeEEEE-EcccCCCCceEeeeeceec-eeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceeccccCCeEEEEeC
Q 010390 295 DHRIYLY-NVLQLDKGPIQHFSGCRIE-SFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWC 372 (512)
Q Consensus 295 dg~i~i~-d~~~~~~~~~~~~~~~~~~-~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~ 372 (512)
||.|.-| |.+.............+.. ..+.-+.-..+.+-+++-+.+|++.++.....+.. .+..--..+.-+++|
T Consensus 289 dG~vsQWFdvr~~~~p~l~h~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~f~st~~~~l--L~~~~~~~~~~~~~S 366 (733)
T COG4590 289 DGLVSQWFDVRRDGQPHLNHIRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQSFYSTSEKLL--LFERAYQAPQLVAMS 366 (733)
T ss_pred CCceeeeeeeecCCCCcceeeeccccCcccceeeccccccceEEEEcCCCceeeeecccCcce--ehhhhhcCcceeeeC
Confidence 9888765 5555443333222222111 11111222223455677777888888866544432 222223467778999
Q ss_pred CCCCCeEEEEeCCCcEEEEeCCCCccc
Q 010390 373 PNEAGKIVTSSDDYTVRLWSLENSRCS 399 (512)
Q Consensus 373 ~~~~~~l~s~~~dg~i~vwd~~~~~~~ 399 (512)
|.+ .+|++- +.|.|+++.+++....
T Consensus 367 p~~-~~Ll~e-~~gki~~~~l~Nr~Pe 391 (733)
T COG4590 367 PNQ-AYLLSE-DQGKIRLAQLENRNPE 391 (733)
T ss_pred ccc-chheee-cCCceEEEEecCCCCC
Confidence 998 677654 4578999999887643
No 441
>PF14761 HPS3_N: Hermansky-Pudlak syndrome 3
Probab=91.69 E-value=7.4 Score=32.90 Aligned_cols=128 Identities=11% Similarity=0.090 Sum_probs=68.6
Q ss_pred CEEEEEeCCCcEEEEeCCC--CeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCC------cEEEE-eCCCCCCCCCccc
Q 010390 121 TNILTASGDQTIKIWDAEK--KKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDG------SFAIW-DLRCKSSPKSNCA 191 (512)
Q Consensus 121 ~~l~s~~~dg~i~iwd~~~--~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg------~i~vw-d~~~~~~~~~~~~ 191 (512)
+.|+.+...+.|.+|++.+ .+....+..- +.|..+.++..| ++++|--.+. .+|+| +.+........
T Consensus 29 d~Lfva~~g~~Vev~~l~~~~~~~~~~F~Tv-~~V~~l~y~~~G-DYlvTlE~k~~~~~~~fvR~Y~NWr~~~~~~~~-- 104 (215)
T PF14761_consen 29 DALFVAASGCKVEVYDLEQEECPLLCTFSTV-GRVLQLVYSEAG-DYLVTLEEKNKRSPVDFVRAYFNWRSQKEENSP-- 104 (215)
T ss_pred ceEEEEcCCCEEEEEEcccCCCceeEEEcch-hheeEEEecccc-ceEEEEEeecCCccceEEEEEEEhhhhcccCCc--
Confidence 4554445667899999983 3456666644 789999999988 8888875432 45553 33322111000
Q ss_pred cceeeecc-cccccccccccccce-ecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccc
Q 010390 192 ESFVFSSA-VVKGAHLLSQSKRVS-RRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKA 255 (512)
Q Consensus 192 ~~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~ 255 (512)
....-.. .............+. ....-...+.+++..|....+++++ ++.+.+|.+.....
T Consensus 105 -v~vRiaG~~v~~~~~~~~~~qleiiElPl~~~p~ciaCC~~tG~LlVg~--~~~l~lf~l~~~~~ 167 (215)
T PF14761_consen 105 -VRVRIAGHRVTPSFNESSKDQLEIIELPLSEPPLCIACCPVTGNLLVGC--GNKLVLFTLKYQTI 167 (215)
T ss_pred -EEEEEcccccccCCCCccccceEEEEecCCCCCCEEEecCCCCCEEEEc--CCEEEEEEEEEEEE
Confidence 0000000 000000000010011 1112255788999988666666633 78999998875443
No 442
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=91.60 E-value=6.6 Score=37.70 Aligned_cols=79 Identities=16% Similarity=0.212 Sum_probs=53.1
Q ss_pred eeEEEEEECCCCCEEEEecCCCCEEEEecC----------CCCCCC--c-------ee-ccccCCeEEEEeCCCC--CCe
Q 010390 321 SFYVKSEICPNASHILSGSSDGNAYVWQVN----------KPQADP--I-------KL-KSHDGEVTAVNWCPNE--AGK 378 (512)
Q Consensus 321 ~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~----------~~~~~~--~-------~~-~~h~~~v~~v~~~~~~--~~~ 378 (512)
-.+..+..++.|..++..+.+|.+ |..+. +++..+ + .+ ....-.+..++|+|+. ...
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~-vMeLp~rwG~~s~~eDgk~~v~CRt~~i~~~~ftss~~ltl~Qa~WHP~S~~D~h 182 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLM-VMELPKRWGKNSEFEDGKSTVNCRTTPVAERFFTSSTSLTLKQAAWHPSSILDPH 182 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeE-EEEchhhcCccceecCCCceEEEEeecccceeeccCCceeeeeccccCCccCCce
Confidence 346678889999999999999954 43331 121100 0 01 1112256788999986 567
Q ss_pred EEEEeCCCcEEEEeCCCCcccc
Q 010390 379 IVTSSDDYTVRLWSLENSRCSS 400 (512)
Q Consensus 379 l~s~~~dg~i~vwd~~~~~~~~ 400 (512)
|+.-+.|.+||+||+...+.+.
T Consensus 183 L~iL~sdnviRiy~lS~~tely 204 (741)
T KOG4460|consen 183 LVLLTSDNVIRIYSLSEPTELY 204 (741)
T ss_pred EEEEecCcEEEEEecCCcchhh
Confidence 8888899999999998876654
No 443
>COG4257 Vgb Streptogramin lyase [Defense mechanisms]
Probab=91.52 E-value=9.1 Score=33.59 Aligned_cols=236 Identities=11% Similarity=0.050 Sum_probs=138.4
Q ss_pred cEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCc
Q 010390 110 AIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSN 189 (512)
Q Consensus 110 ~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~ 189 (512)
.-..++-.|||..-+++...+.|--.|..+|+....-.+....-..|..-|++. ..++-+.. .|.-.|-++.+....
T Consensus 63 ap~dvapapdG~VWft~qg~gaiGhLdP~tGev~~ypLg~Ga~Phgiv~gpdg~-~Witd~~~-aI~R~dpkt~evt~f- 139 (353)
T COG4257 63 APFDVAPAPDGAVWFTAQGTGAIGHLDPATGEVETYPLGSGASPHGIVVGPDGS-AWITDTGL-AIGRLDPKTLEVTRF- 139 (353)
T ss_pred CccccccCCCCceEEecCccccceecCCCCCceEEEecCCCCCCceEEECCCCC-eeEecCcc-eeEEecCcccceEEe-
Confidence 445667778888888888888888888888887665555555666777888874 33332222 344444433321110
Q ss_pred cccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCC----------eEEEEeccCccceecc
Q 010390 190 CAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNS----------IVKFWDTRNLKAQITQ 259 (512)
Q Consensus 190 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg----------~i~iwd~~~~~~~~~~ 259 (512)
...............|.+.|...++ + ..| .|++|+.-.
T Consensus 140 -----------------------~lp~~~a~~nlet~vfD~~G~lWFt-~-q~G~yGrLdPa~~~i~vfpaPq------- 187 (353)
T COG4257 140 -----------------------PLPLEHADANLETAVFDPWGNLWFT-G-QIGAYGRLDPARNVISVFPAPQ------- 187 (353)
T ss_pred -----------------------ecccccCCCcccceeeCCCccEEEe-e-ccccceecCcccCceeeeccCC-------
Confidence 0012233456777888888887776 3 222 344443332
Q ss_pred cCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEec
Q 010390 260 AWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGS 339 (512)
Q Consensus 260 ~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~ 339 (512)
...-+.|+..|+|..-++.-.++.|-..|........+..-... ..-...+--+|.|+.-++-.
T Consensus 188 --------------G~gpyGi~atpdGsvwyaslagnaiaridp~~~~aev~p~P~~~--~~gsRriwsdpig~~wittw 251 (353)
T COG4257 188 --------------GGGPYGICATPDGSVWYASLAGNAIARIDPFAGHAEVVPQPNAL--KAGSRRIWSDPIGRAWITTW 251 (353)
T ss_pred --------------CCCCcceEECCCCcEEEEeccccceEEcccccCCcceecCCCcc--cccccccccCccCcEEEecc
Confidence 23467789999999888887888888888655432222111110 11122345567787777777
Q ss_pred CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 340 SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 340 ~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
..+.++.||-....-....+.+....-.++.....+ ....+--.-|.|.-+|.++.+
T Consensus 252 g~g~l~rfdPs~~sW~eypLPgs~arpys~rVD~~g-rVW~sea~agai~rfdpeta~ 308 (353)
T COG4257 252 GTGSLHRFDPSVTSWIEYPLPGSKARPYSMRVDRHG-RVWLSEADAGAIGRFDPETAR 308 (353)
T ss_pred CCceeeEeCcccccceeeeCCCCCCCcceeeeccCC-cEEeeccccCceeecCcccce
Confidence 778888888766543334444555555666665555 444444444556556655443
No 444
>KOG2280 consensus Vacuolar assembly/sorting protein VPS16 [Intracellular trafficking, secretion, and vesicular transport]
Probab=91.46 E-value=14 Score=37.30 Aligned_cols=168 Identities=14% Similarity=0.115 Sum_probs=83.4
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
...+-.+.|+.+...+++. .+|.+.+|++-......... ........|....+..+|-.+++ .+|.+.
T Consensus 83 ~~~lI~mgWs~~eeLI~v~--k~g~v~Vy~~~ge~ie~~sv--------g~e~~~~~I~ec~~f~~GVavlt--~~g~v~ 150 (829)
T KOG2280|consen 83 HGELIGMGWSDDEELICVQ--KDGTVHVYGLLGEFIESNSV--------GFESQMSDIVECRFFHNGVAVLT--VSGQVI 150 (829)
T ss_pred CCCeeeecccCCceEEEEe--ccceEEEeecchhhhccccc--------ccccccCceeEEEEecCceEEEe--cCCcEE
Confidence 3478899999888777664 79999999987543322100 11222233444444445544333 344444
Q ss_pred EEE-cccCCCCceEeeeeceeceeEEEE-EECCCC--CEEEEec-CCCCEEEEecCCCCCCCceeccccCCeEEEEeCCC
Q 010390 300 LYN-VLQLDKGPIQHFSGCRIESFYVKS-EICPNA--SHILSGS-SDGNAYVWQVNKPQADPIKLKSHDGEVTAVNWCPN 374 (512)
Q Consensus 300 i~d-~~~~~~~~~~~~~~~~~~~~~~~~-~~s~~~--~~l~~g~-~dg~i~iw~~~~~~~~~~~~~~h~~~v~~v~~~~~ 374 (512)
+-+ ............+...... .+. ++.|.. ..++-.. ..+ ..++...........+..-.+.+..+..||+
T Consensus 151 ~i~~~~~~~~~~~~diP~~~~~~--~~Wt~~~~~~~~~~ll~v~~~v~-~~~~q~~~~~~q~~~~~~~~~~~~ki~VS~n 227 (829)
T KOG2280|consen 151 LINGVEEPKLRKMPDIPYNELPK--SCWTVFQPHRQSTILLDVDVAVG-LHICQVEESRVQLHALSWPNSSVVKISVSPN 227 (829)
T ss_pred EEcCCCcchhhhCCCCCCccCCC--cceeEecCCCcceeEEeechhhh-hcccceecccccccccCCCCceEEEEEEcCC
Confidence 333 2211111111111111110 111 122211 1111111 111 2223222222211222222356788899999
Q ss_pred CCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 375 EAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 375 ~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
. ++|+--..+|.|.+-+.+..++...+.
T Consensus 228 ~-~~laLyt~~G~i~~vs~D~~~~lce~~ 255 (829)
T KOG2280|consen 228 R-RFLALYTETGKIWVVSIDLSQILCEFN 255 (829)
T ss_pred c-ceEEEEecCCcEEEEecchhhhhhccC
Confidence 8 899999999999999988887766654
No 445
>PF14655 RAB3GAP2_N: Rab3 GTPase-activating protein regulatory subunit N-terminus
Probab=91.18 E-value=3.6 Score=39.13 Aligned_cols=83 Identities=8% Similarity=0.115 Sum_probs=55.9
Q ss_pred eccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEE-EEeeCCCC-----------------
Q 010390 102 SDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKS-LCSHPTNS----------------- 163 (512)
Q Consensus 102 ~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~-l~~~~~~~----------------- 163 (512)
..+......+.+++.+|++++.++...-|.|.++|+.++..++.+++-.+.=.. +.....+.
T Consensus 301 ~~l~D~~R~~~~i~~sP~~~laA~tDslGRV~LiD~~~~~vvrmWKGYRdAqc~wi~~~~~~~~~~~~~~~~~~~~~~~l 380 (415)
T PF14655_consen 301 FGLPDSKREGESICLSPSGRLAAVTDSLGRVLLIDVARGIVVRMWKGYRDAQCGWIEVPEEGDRDRSNSNSPKSSSRFAL 380 (415)
T ss_pred EeeccCCceEEEEEECCCCCEEEEEcCCCcEEEEECCCChhhhhhccCccceEEEEEeecccccccccccccCCCCcceE
Confidence 344455677999999999998888877899999999999888887765432111 11100000
Q ss_pred CeEEEEeCCCcEEEEeCCCCC
Q 010390 164 DILVSGSRDGSFAIWDLRCKS 184 (512)
Q Consensus 164 ~~l~s~~~dg~i~vwd~~~~~ 184 (512)
.+++-+-.-|.|-||+++.+.
T Consensus 381 ~LvIyaprRg~lEvW~~~~g~ 401 (415)
T PF14655_consen 381 FLVIYAPRRGILEVWSMRQGP 401 (415)
T ss_pred EEEEEeccCCeEEEEecCCCC
Confidence 123444556889999988654
No 446
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=90.87 E-value=9.5 Score=41.19 Aligned_cols=36 Identities=19% Similarity=0.504 Sum_probs=29.0
Q ss_pred ecCCccCCcceEEEEEecCCCcEEEEeeCCCcEEEEECC
Q 010390 45 EHHGEETPPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSR 83 (512)
Q Consensus 45 ~~~gh~~~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~ 83 (512)
...|.......++| +|...++|.|...|.|.+|-..
T Consensus 30 ~~~G~~~~~~~~af---D~~q~llai~t~tg~i~~yg~~ 65 (993)
T KOG1983|consen 30 NRHGFPSTPSALAF---DPTQGLLAIGTRTGAIKIYGQP 65 (993)
T ss_pred eecCCCCCCcceee---ccccceEEEEEecccEEEeccc
Confidence 34455566677777 9999999999999999999754
No 447
>PHA02790 Kelch-like protein; Provisional
Probab=90.57 E-value=19 Score=35.60 Aligned_cols=62 Identities=11% Similarity=0.087 Sum_probs=32.6
Q ss_pred CCCEEEEEeCC--CcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCC---cEEEEeCCCC
Q 010390 119 EDTNILTASGD--QTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDG---SFAIWDLRCK 183 (512)
Q Consensus 119 ~~~~l~s~~~d--g~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg---~i~vwd~~~~ 183 (512)
++...+.||.+ ..+..||..+++- +..+....... +++.. ++ .+.+.||.++ .+..||.++.
T Consensus 318 ~~~iYviGG~~~~~sve~ydp~~n~W~~~~~l~~~r~~~-~~~~~-~g-~IYviGG~~~~~~~ve~ydp~~~ 386 (480)
T PHA02790 318 NNKLYVVGGLPNPTSVERWFHGDAAWVNMPSLLKPRCNP-AVASI-NN-VIYVIGGHSETDTTTEYLLPNHD 386 (480)
T ss_pred CCEEEEECCcCCCCceEEEECCCCeEEECCCCCCCCccc-EEEEE-CC-EEEEecCcCCCCccEEEEeCCCC
Confidence 67777777754 3578888766532 22222111111 22222 23 6777777653 3566776543
No 448
>KOG2247 consensus WD40 repeat-containing protein [General function prediction only]
Probab=90.24 E-value=0.05 Score=50.72 Aligned_cols=249 Identities=12% Similarity=0.144 Sum_probs=137.4
Q ss_pred CCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCC
Q 010390 107 HQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSP 186 (512)
Q Consensus 107 h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~ 186 (512)
|-..-....|-+.+.-++.++.+..+..|| +.++.+..+. ..+....++|..+++..++.+-..+.+.+||+.+....
T Consensus 33 alv~pi~~~w~~e~~nlavaca~tiv~~YD-~agq~~le~n-~tg~aldm~wDkegdvlavlAek~~piylwd~n~eytq 110 (615)
T KOG2247|consen 33 ALVGPIIHRWRPEGHNLAVACANTIVIYYD-KAGQVILELN-PTGKALDMAWDKEGDVLAVLAEKTGPIYLWDVNSEYTQ 110 (615)
T ss_pred hccccceeeEecCCCceehhhhhhHHHhhh-hhcceecccC-CchhHhhhhhccccchhhhhhhcCCCeeechhhhhhHH
Confidence 334445567888777788888999999999 4455444444 34556678898888777788888899999999855322
Q ss_pred CCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccc
Q 010390 187 KSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAES 266 (512)
Q Consensus 187 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~ 266 (512)
.... +....-.-+.|++....++. |...|.+.+++..+.+...
T Consensus 111 qLE~---------------------------gg~~s~sll~wsKg~~el~i-g~~~gn~viynhgtsR~ii--------- 153 (615)
T KOG2247|consen 111 QLES---------------------------GGTSSKSLLAWSKGTPELVI-GNNAGNIVIYNHGTSRRII--------- 153 (615)
T ss_pred HHhc---------------------------cCcchHHHHhhccCCccccc-cccccceEEEeccchhhhh---------
Confidence 2110 00111111567776666665 5578899999988766553
Q ss_pred cccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceecee--EEE-EEECCCCCEEEEecCCCC
Q 010390 267 SSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESF--YVK-SEICPNASHILSGSSDGN 343 (512)
Q Consensus 267 ~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~--~~~-~~~s~~~~~l~~g~~dg~ 343 (512)
....|...++++++.+.+..+.. +.|..+.+-...+. ........+...+.. ... -.|..-|..+.+.-. |.
T Consensus 154 --v~Gkh~RRgtq~av~lEd~vil~-dcd~~L~v~~qege-ta~ltevggepdnm~~~y~k~n~w~kage~m~sVvs-gK 228 (615)
T KOG2247|consen 154 --VMGKHQRRGTQIAVTLEDYVILC-DCDNTLSVTTQEGE-TASLTEVGGEPDNMDFFYGKVNGWGKAGETMVSVVS-GK 228 (615)
T ss_pred --hhcccccceeEEEecccceeeec-CcHHHHHHhhhccc-eeeeeeccCccchhhhheeeeeccccccceeeeeee-cH
Confidence 23447778999999987754443 33433332222110 000111111111100 000 122233333332211 11
Q ss_pred EEEE--ecCCC-CCCCceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 344 AYVW--QVNKP-QADPIKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 344 i~iw--~~~~~-~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+++. .+... ++.-..+..-.+.+.|+.|--|| +|.-+-+-|.|..-.+.++++...
T Consensus 229 khl~yak~nE~D~pval~fq~~~gni~cyrwylDg--~i~igf~ag~iV~iS~h~aeLgae 287 (615)
T KOG2247|consen 229 KHLMYAKYNELDEPVALQFQEKYGNIHCYRWYLDG--YILIGFDAGYIVSISAHNAELGAE 287 (615)
T ss_pred HHHHHHhhcCCCCccceEeeecCCceeEEEEeccc--cccccccceeEEEEeccchHHHHH
Confidence 1111 11111 11112444556778899998886 555566666777777777776554
No 449
>PRK13684 Ycf48-like protein; Provisional
Probab=90.18 E-value=16 Score=34.07 Aligned_cols=153 Identities=8% Similarity=0.091 Sum_probs=80.6
Q ss_pred CCcceEEEEEecCCCcEEEEeeCCCcEEE-EECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCC
Q 010390 51 TPPLAVSFCKTSKNSHIFAVSDEDGYVSL-FDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGD 129 (512)
Q Consensus 51 ~~v~~v~~~~~s~~~~~latg~~dg~i~i-wd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~d 129 (512)
+.+.++.+ .|++.++++|. .|.+.. +|-. ++. . ..+ ...-...++++.+.++++.++.+ ..
T Consensus 173 g~~~~i~~---~~~g~~v~~g~-~G~i~~s~~~g-g~t-W---------~~~--~~~~~~~l~~i~~~~~g~~~~vg-~~ 234 (334)
T PRK13684 173 GVVRNLRR---SPDGKYVAVSS-RGNFYSTWEPG-QTA-W---------TPH--QRNSSRRLQSMGFQPDGNLWMLA-RG 234 (334)
T ss_pred ceEEEEEE---CCCCeEEEEeC-CceEEEEcCCC-CCe-E---------EEe--eCCCcccceeeeEcCCCCEEEEe-cC
Confidence 34566666 88887777665 554432 2211 110 0 001 12334688999999988876665 56
Q ss_pred CcEEEEeCCCCeeeecccC----cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccc
Q 010390 130 QTIKIWDAEKKKCTGALMG----HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAH 205 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~----h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~ 205 (512)
|.+++=..+.+..-..... ....+.++.+.+++ . ++.++.+|.+.. ....++.-....
T Consensus 235 G~~~~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~-~-~~~~G~~G~v~~-S~d~G~tW~~~~--------------- 296 (334)
T PRK13684 235 GQIRFNDPDDLESWSKPIIPEITNGYGYLDLAYRTPG-E-IWAGGGNGTLLV-SKDGGKTWEKDP--------------- 296 (334)
T ss_pred CEEEEccCCCCCccccccCCccccccceeeEEEcCCC-C-EEEEcCCCeEEE-eCCCCCCCeECC---------------
Confidence 7665323344432221111 12357888898865 4 445556676543 333332211100
Q ss_pred cccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEec
Q 010390 206 LLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDT 250 (512)
Q Consensus 206 ~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~ 250 (512)
....-......+.|..++..+++ | ..|.|..|+-
T Consensus 297 ---------~~~~~~~~~~~~~~~~~~~~~~~-G-~~G~il~~~~ 330 (334)
T PRK13684 297 ---------VGEEVPSNFYKIVFLDPEKGFVL-G-QRGVLLRYVG 330 (334)
T ss_pred ---------cCCCCCcceEEEEEeCCCceEEE-C-CCceEEEecC
Confidence 00011235777887777666554 5 5888877653
No 450
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=90.02 E-value=15 Score=33.40 Aligned_cols=197 Identities=9% Similarity=-0.029 Sum_probs=93.1
Q ss_pred cEEEEeCCCCeeeecccC------cCCCEEEEEeeCCCC-----CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecc
Q 010390 131 TIKIWDAEKKKCTGALMG------HTGSIKSLCSHPTNS-----DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSA 199 (512)
Q Consensus 131 ~i~iwd~~~~~~~~~~~~------h~~~v~~l~~~~~~~-----~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~ 199 (512)
.|.+||+.+++.++++.- ..+.++.+.+....+ ...++=+..+.|.|+|+.+++.-...........
T Consensus 35 KLv~~Dl~t~~li~~~~~p~~~~~~~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p-- 112 (287)
T PF03022_consen 35 KLVAFDLKTNQLIRRYPFPPDIAPPDSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDP-- 112 (287)
T ss_dssp EEEEEETTTTCEEEEEE--CCCS-TCGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS---
T ss_pred EEEEEECCCCcEEEEEECChHHcccccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceec--
Confidence 688999999988776532 245678888876432 2334444456899999987654322211000000
Q ss_pred cccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCccceecccCCCc--ccccccccc-
Q 010390 200 VVKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNLKAQITQAWPHA--ESSSAKETR- 273 (512)
Q Consensus 200 ~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~--~~~~~~~~~- 273 (512)
........+. .+ .....+..++.+| +++.+....-.. -++|.+.+............ .......+.
T Consensus 113 --~~~~~~i~g~---~~-~~~dg~~gial~~~~~d~r~LYf~~lss--~~ly~v~T~~L~~~~~~~~~~~~~~v~~lG~k 184 (287)
T PF03022_consen 113 --DAGPFTIGGE---SF-QWPDGIFGIALSPISPDGRWLYFHPLSS--RKLYRVPTSVLRDPSLSDAQALASQVQDLGDK 184 (287)
T ss_dssp --SSEEEEETTE---EE-EETTSEEEEEE-TTSTTS-EEEEEETT---SEEEEEEHHHHCSTT--HHH-HHHT-EEEEE-
T ss_pred --cccceeccCc---eE-ecCCCccccccCCCCCCccEEEEEeCCC--CcEEEEEHHHhhCccccccccccccceecccc
Confidence 0000000000 11 1122377777765 565666543222 23333332111100000000 000011122
Q ss_pred ccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCC-ceEeeee-ceeceeEEEEEECC--CCCEEEE
Q 010390 274 LHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKG-PIQHFSG-CRIESFYVKSEICP--NASHILS 337 (512)
Q Consensus 274 ~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~-~~~~~~~-~~~~~~~~~~~~s~--~~~~l~~ 337 (512)
......++++++|.++++--..+.|..|+....-.. ....+.. ...-.+...+.+.+ +|.+.+.
T Consensus 185 ~~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g~L~v~ 252 (287)
T PF03022_consen 185 GSQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGPYTPENFEILAQDPRTLQWPDGLKIDPEGDGYLWVL 252 (287)
T ss_dssp --SECEEEEETTTEEEEEECCCTEEEEEETTTSB-GCCEEEEEE-CC-GSSEEEEEE-T--TS-EEEE
T ss_pred CCCCceEEECCCCcEEEecCCCCeEEEEeCCCCcCccchheeEEcCceeeccceeeeccccCceEEEE
Confidence 235678899999999988889999999997642111 2222222 22134556677776 5544433
No 451
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=89.87 E-value=1.6 Score=44.08 Aligned_cols=84 Identities=19% Similarity=0.256 Sum_probs=46.8
Q ss_pred CCCcEEEEeeCCCcEEEEECCCCC---Cc-ccc-ccccccccceeccc--------cCCCcEEEEEEec----CCCEEEE
Q 010390 63 KNSHIFAVSDEDGYVSLFDSRRKL---PS-FAC-HRENAEKARISDWV--------AHQNAIFDLCWIK----EDTNILT 125 (512)
Q Consensus 63 ~~~~~latg~~dg~i~iwd~~~~~---~~-~~~-~~~~~~~~~~~~~~--------~h~~~V~~l~~s~----~~~~l~s 125 (512)
++...++++..||.+...+..... .. ... +....-...+..+. .-.+.+..++.+. +..+|++
T Consensus 156 ~~~~~l~v~~~dG~ll~l~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~t 235 (547)
T PF11715_consen 156 DSEANLVVSLQDGGLLRLKRSSGDSDGSVWSEELFNDSSWLRSLSGLFPWSYRGDNSSSSVAASLAVSSSEINDDTFLFT 235 (547)
T ss_dssp -SSSBEEEEESSS-EEEEEES----SSS-EE----STHHHHHCCTTTS-TT---SSSS---EEEEEE-----ETTTEEEE
T ss_pred cCCCEEEEEECCCCeEEEECCcccCCCCeeEEEEeCCCchhhhhhCcCCcccccCCCCCCccceEEEecceeCCCCEEEE
Confidence 467788888999999888866411 10 000 00000001111111 1134566666666 7789999
Q ss_pred EeCCCcEEEEeCCCCeeeecc
Q 010390 126 ASGDQTIKIWDAEKKKCTGAL 146 (512)
Q Consensus 126 ~~~dg~i~iwd~~~~~~~~~~ 146 (512)
.+.|+++|+||+.+++++.+.
T Consensus 236 l~~D~~LRiW~l~t~~~~~~~ 256 (547)
T PF11715_consen 236 LSRDHTLRIWSLETGQCLATI 256 (547)
T ss_dssp EETTSEEEEEETTTTCEEEEE
T ss_pred EeCCCeEEEEECCCCeEEEEe
Confidence 999999999999999986654
No 452
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=89.19 E-value=19 Score=34.35 Aligned_cols=112 Identities=8% Similarity=0.019 Sum_probs=60.8
Q ss_pred eeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC--
Q 010390 277 ISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA-- 354 (512)
Q Consensus 277 i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~-- 354 (512)
...+...+++.+++++.....++-||-.. ..-..........+..+.+.+++.+++++. +|.+ ++....+..
T Consensus 241 f~~v~~~~dG~~~~vg~~G~~~~s~d~G~----~~W~~~~~~~~~~l~~v~~~~dg~l~l~g~-~G~l-~~S~d~G~~~~ 314 (398)
T PLN00033 241 FSTVNRSPDGDYVAVSSRGNFYLTWEPGQ----PYWQPHNRASARRIQNMGWRADGGLWLLTR-GGGL-YVSKGTGLTEE 314 (398)
T ss_pred eeeEEEcCCCCEEEEECCccEEEecCCCC----cceEEecCCCccceeeeeEcCCCCEEEEeC-CceE-EEecCCCCccc
Confidence 45566778888777775554444455211 100111111223466788889998887774 4544 333333321
Q ss_pred --CCceecc--ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 355 --DPIKLKS--HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 355 --~~~~~~~--h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
....... -...++++.|.+++ .++.++.+|.+.... +.|+
T Consensus 315 ~~~f~~~~~~~~~~~l~~v~~~~d~--~~~a~G~~G~v~~s~-D~G~ 358 (398)
T PLN00033 315 DFDFEEADIKSRGFGILDVGYRSKK--EAWAAGGSGILLRST-DGGK 358 (398)
T ss_pred ccceeecccCCCCcceEEEEEcCCC--cEEEEECCCcEEEeC-CCCc
Confidence 1111111 12358999999876 456666778776664 4444
No 453
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=89.10 E-value=1.9 Score=24.92 Aligned_cols=30 Identities=10% Similarity=0.196 Sum_probs=20.2
Q ss_pred cCCCcEEEEEEecCCCEEEE-EeCC--CcEEEE
Q 010390 106 AHQNAIFDLCWIKEDTNILT-ASGD--QTIKIW 135 (512)
Q Consensus 106 ~h~~~V~~l~~s~~~~~l~s-~~~d--g~i~iw 135 (512)
.....-....|+|||++|+- +..+ |.-.||
T Consensus 6 ~~~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 6 NSPGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp -SSSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred cCCccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34557788999999999984 4445 666665
No 454
>PF14781 BBS2_N: Ciliary BBSome complex subunit 2, N-terminal
Probab=88.81 E-value=9.3 Score=29.53 Aligned_cols=112 Identities=13% Similarity=0.150 Sum_probs=65.5
Q ss_pred EEeCCCCCEEEEEecCCeEEEEEcccCC------CCceEeeeeceeceeEEEEE---ECC--CCCEEEEecCCCCEEEEe
Q 010390 280 LSQDSNGVFLTASCMDHRIYLYNVLQLD------KGPIQHFSGCRIESFYVKSE---ICP--NASHILSGSSDGNAYVWQ 348 (512)
Q Consensus 280 ~~~~~~~~~l~~~~~dg~i~i~d~~~~~------~~~~~~~~~~~~~~~~~~~~---~s~--~~~~l~~g~~dg~i~iw~ 348 (512)
-.|+.....|++++.-|+|.|++..... ...+..+. ....+++++ +.| +...|+.|+. ..+..||
T Consensus 4 GkfDG~~pcL~~aT~~gKV~IH~ph~~~~~~~~~~~~i~~LN---in~~italaaG~l~~~~~~D~LliGt~-t~llaYD 79 (136)
T PF14781_consen 4 GKFDGVHPCLACATTGGKVFIHNPHERGQRTGRQDSDISFLN---INQEITALAAGRLKPDDGRDCLLIGTQ-TSLLAYD 79 (136)
T ss_pred EEeCCCceeEEEEecCCEEEEECCCccccccccccCceeEEE---CCCceEEEEEEecCCCCCcCEEEEecc-ceEEEEE
Confidence 3455566678889999999999865432 11222222 223344443 332 3566777775 4599999
Q ss_pred cCCCCCCCceeccccCCeEEEEeCCCC--CCeEEEEeCCCcEEEEeCCCCc
Q 010390 349 VNKPQADPIKLKSHDGEVTAVNWCPNE--AGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 349 ~~~~~~~~~~~~~h~~~v~~v~~~~~~--~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
+...... .++.-.+.|.++.+-.-+ +.-|+..+.+..|.-+|.+..+
T Consensus 80 V~~N~d~--Fyke~~DGvn~i~~g~~~~~~~~l~ivGGncsi~Gfd~~G~e 128 (136)
T PF14781_consen 80 VENNSDL--FYKEVPDGVNAIVIGKLGDIPSPLVIVGGNCSIQGFDYEGNE 128 (136)
T ss_pred cccCchh--hhhhCccceeEEEEEecCCCCCcEEEECceEEEEEeCCCCcE
Confidence 9877653 333344667777763211 1345555556677777766544
No 455
>KOG1900 consensus Nuclear pore complex, Nup155 component (D Nup154, sc Nup157/Nup170) [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=88.40 E-value=9.3 Score=41.17 Aligned_cols=140 Identities=9% Similarity=0.022 Sum_probs=82.3
Q ss_pred cCCeEEEEeccCccceecccCCCccccccccccccCeeEEEe--------CCCCCEEEEEecCCeEEEEEcccCCCCc-e
Q 010390 241 VNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQ--------DSNGVFLTASCMDHRIYLYNVLQLDKGP-I 311 (512)
Q Consensus 241 ~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~--------~~~~~~l~~~~~dg~i~i~d~~~~~~~~-~ 311 (512)
.|..+.+|+.++...... ..+..+.|..+.. -|.=+++++-..--.|.++-+...+... .
T Consensus 97 iDn~L~lWny~~~~e~~~-----------~d~~shtIl~V~LvkPkpgvFv~~IqhlLvvaT~~ei~ilgV~~~~~~~~~ 165 (1311)
T KOG1900|consen 97 IDNNLFLWNYESDNELAE-----------YDGLSHTILKVGLVKPKPGVFVPEIQHLLVVATPVEIVILGVSFDEFTGEL 165 (1311)
T ss_pred eCCeEEEEEcCCCCcccc-----------ccchhhhheeeeeecCCCCcchhhhheeEEecccceEEEEEEEeccccCcc
Confidence 489999999998554432 3333334444433 2222444444455566666553322111 1
Q ss_pred ----EeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC----CCC----C----------------CCceecccc
Q 010390 312 ----QHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN----KPQ----A----------------DPIKLKSHD 363 (512)
Q Consensus 312 ----~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~----~~~----~----------------~~~~~~~h~ 363 (512)
..+.-......+.++....+|+.+++|-++ .+|.+. .+. + .......+.
T Consensus 166 ~~f~~~~~i~~dg~~V~~I~~t~nGRIF~~G~dg---~lyEl~Yq~~~gWf~~rc~Kiclt~s~ls~lvPs~~~~~~~~~ 242 (1311)
T KOG1900|consen 166 SIFNTSFKISVDGVSVNCITYTENGRIFFAGRDG---NLYELVYQAEDGWFGSRCRKICLTKSVLSSLVPSLLSVPGSSK 242 (1311)
T ss_pred cccccceeeecCCceEEEEEeccCCcEEEeecCC---CEEEEEEeccCchhhcccccccCchhHHHHhhhhhhcCCCCCC
Confidence 111111223457778878888888777654 444432 110 0 001112567
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
++|..+...... +++.+-+..|+|.+||+..
T Consensus 243 dpI~qi~ID~SR-~IlY~lsek~~v~~Y~i~~ 273 (1311)
T KOG1900|consen 243 DPIRQITIDNSR-NILYVLSEKGTVSAYDIGG 273 (1311)
T ss_pred CcceeeEecccc-ceeeeeccCceEEEEEccC
Confidence 799999998877 8999999999999999987
No 456
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=87.99 E-value=22 Score=32.94 Aligned_cols=173 Identities=13% Similarity=0.143 Sum_probs=88.7
Q ss_pred ccEEEEEEeecCCEEEEEeecCCe------EEEEeccCccc-----eecccCCCccc-cccccccccCeeEEEeCCCCCE
Q 010390 221 MSITSVLYLKDEVSIATASAVNSI------VKFWDTRNLKA-----QITQAWPHAES-SSAKETRLHGISSLSQDSNGVF 288 (512)
Q Consensus 221 ~~v~~~~~~~~~~~l~~~g~~dg~------i~iwd~~~~~~-----~~~~~~~~~~~-~~~~~~~~~~i~~~~~~~~~~~ 288 (512)
+.+..+.+.+++..+++.+ ++|. +..+++..... ......+.... -..+........+|++.+++.+
T Consensus 20 GGlSgl~~~~~~~~~~avS-D~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~~~~G~~~~~~~~D~Egi~~~~~g~~ 98 (326)
T PF13449_consen 20 GGLSGLDYDPDDGRFYAVS-DRGPNKGPPRFYTFRIDYDQGGIGGVTILDMIPLRDPDGQPFPKNGLDPEGIAVPPDGSF 98 (326)
T ss_pred CcEeeEEEeCCCCEEEEEE-CCCCCCCCCcEEEEEeeccCCCccceEeccceeccCCCCCcCCcCCCChhHeEEecCCCE
Confidence 4678899986555555544 5676 65555554110 00000000000 0001111224567888788888
Q ss_pred EEEEecC------CeEEEEEcccCCCCce---Eee-------eeceeceeEEEEEECCCCCEEEEecC-----CC--C--
Q 010390 289 LTASCMD------HRIYLYNVLQLDKGPI---QHF-------SGCRIESFYVKSEICPNASHILSGSS-----DG--N-- 343 (512)
Q Consensus 289 l~~~~~d------g~i~i~d~~~~~~~~~---~~~-------~~~~~~~~~~~~~~s~~~~~l~~g~~-----dg--~-- 343 (512)
+++.-.+ ..|+.++........+ ..+ .....+.-.-.++++|+|+.|+++.. |+ .
T Consensus 99 ~is~E~~~~~~~~p~I~~~~~~G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~E~~l~~d~~~~~~ 178 (326)
T PF13449_consen 99 WISSEGGRTGGIPPRIRRFDLDGRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAMESPLKQDGPRANP 178 (326)
T ss_pred EEEeCCccCCCCCCEEEEECCCCcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEECccccCCCccccc
Confidence 8887777 7888888652111111 011 22233445667999999996655432 22 1
Q ss_pred -----EEEEecCCC--CCCCc----eecc-----ccCCeEEEEeCCCCCCeEEEE-----eCCCcEEEEeCCC
Q 010390 344 -----AYVWQVNKP--QADPI----KLKS-----HDGEVTAVNWCPNEAGKIVTS-----SDDYTVRLWSLEN 395 (512)
Q Consensus 344 -----i~iw~~~~~--~~~~~----~~~~-----h~~~v~~v~~~~~~~~~l~s~-----~~dg~i~vwd~~~ 395 (512)
++|+.+... ..... .+.. ....|+.+.+-+++ ++|+-= +....++|+.+.-
T Consensus 179 ~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~-~lLvLER~~~~~~~~~~ri~~v~l 250 (326)
T PF13449_consen 179 DNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDG-RLLVLERDFSPGTGNYKRIYRVDL 250 (326)
T ss_pred ccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCC-cEEEEEccCCCCccceEEEEEEEc
Confidence 556554432 21111 1121 34678999999998 555431 1334555655543
No 457
>PLN00033 photosystem II stability/assembly factor; Provisional
Probab=87.86 E-value=26 Score=33.49 Aligned_cols=110 Identities=9% Similarity=0.032 Sum_probs=62.7
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe-----eeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK-----CTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDL 180 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~-----~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~ 180 (512)
...++++.|.+++..++++ .+|.+ +|....++ ....... -...+.++.|.+++ . ++.++.+|.+....
T Consensus 280 ~~~l~~v~~~~dg~l~l~g-~~G~l-~~S~d~G~~~~~~~f~~~~~~~~~~~l~~v~~~~d~-~-~~a~G~~G~v~~s~- 354 (398)
T PLN00033 280 ARRIQNMGWRADGGLWLLT-RGGGL-YVSKGTGLTEEDFDFEEADIKSRGFGILDVGYRSKK-E-AWAAGGSGILLRST- 354 (398)
T ss_pred ccceeeeeEcCCCCEEEEe-CCceE-EEecCCCCcccccceeecccCCCCcceEEEEEcCCC-c-EEEEECCCcEEEeC-
Confidence 4578999999888877665 56654 44444553 1222221 12358889998765 4 55556677766653
Q ss_pred CCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390 181 RCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW 248 (512)
Q Consensus 181 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw 248 (512)
..++.-... .....-...++.+.|.++++.+++ | .+|.|.-|
T Consensus 355 D~G~tW~~~------------------------~~~~~~~~~ly~v~f~~~~~g~~~-G-~~G~il~~ 396 (398)
T PLN00033 355 DGGKSWKRD------------------------KGADNIAANLYSVKFFDDKKGFVL-G-NDGVLLRY 396 (398)
T ss_pred CCCcceeEc------------------------cccCCCCcceeEEEEcCCCceEEE-e-CCcEEEEe
Confidence 222211100 000122346788998877766665 5 68877654
No 458
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=87.44 E-value=43 Score=35.59 Aligned_cols=69 Identities=22% Similarity=0.298 Sum_probs=43.9
Q ss_pred CCcEEEEEEecCC------CEEEEEeCCCcEEEEeCCCCeeeecc--cCcCCCEEEEEeeCC---C-----CCeEEEEeC
Q 010390 108 QNAIFDLCWIKED------TNILTASGDQTIKIWDAEKKKCTGAL--MGHTGSIKSLCSHPT---N-----SDILVSGSR 171 (512)
Q Consensus 108 ~~~V~~l~~s~~~------~~l~s~~~dg~i~iwd~~~~~~~~~~--~~h~~~v~~l~~~~~---~-----~~~l~s~~~ 171 (512)
+..|.|+++.++. ++++.|+.|+++++..+.-..++..+ ++-..++.++.+-+. + .-+|.+|-.
T Consensus 582 ~~~vac~ai~~~~~g~krsrfla~a~~d~~vriisL~p~d~l~~ls~q~l~~~~~s~~iv~~~~~~~~~~~~L~l~~GL~ 661 (1205)
T KOG1898|consen 582 STDVACLAIGQDPEGEKRSRFLALASVDNMVRIISLDPSDCLQPLSVQGLSSPPESLCIVEMEATGGTDVAQLYLLIGLR 661 (1205)
T ss_pred ceeehhhccCCCCcchhhcceeeeeccccceeEEEecCcceEEEccccccCCCccceEEEEecccCCccceeEEEEeccc
Confidence 4678888887754 67999999999999998765555444 334445555554332 2 124556666
Q ss_pred CCcEE
Q 010390 172 DGSFA 176 (512)
Q Consensus 172 dg~i~ 176 (512)
+|.+.
T Consensus 662 NGvll 666 (1205)
T KOG1898|consen 662 NGVLL 666 (1205)
T ss_pred ccEEE
Confidence 66543
No 459
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=87.41 E-value=15 Score=37.01 Aligned_cols=68 Identities=12% Similarity=0.108 Sum_probs=48.2
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCee--eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKC--TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~--~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
...++++.-+|.++.++.+..||.|+++++..... +.+.. .+-..+.|...| |++...|..+.-|.-+
T Consensus 14 ~e~~~aiqshp~~~s~v~~~~d~si~lfn~~~r~qski~~~~---~p~~nlv~tnhg---l~~~tsdrr~la~~~d 83 (1636)
T KOG3616|consen 14 DEFTTAIQSHPGGQSFVLAHQDGSIILFNFIPRRQSKICEEA---KPKENLVFTNHG---LVTATSDRRALAWKED 83 (1636)
T ss_pred cceeeeeeecCCCceEEEEecCCcEEEEeecccchhhhhhhc---CCccceeeeccc---eEEEeccchhheeecc
Confidence 45678888889999999999999999999865543 33322 233445565433 7777778888888643
No 460
>TIGR03118 PEPCTERM_chp_1 conserved hypothetical protein TIGR03118. This model describes and uncharacterized conserved hypothetical protein. Members are found with the C-terminal putative exosortase interaction domain, PEP-CTERM, in Nitrosospira multiformis, Rhodoferax ferrireducens, Solibacter usitatus Ellin6076, and Acidobacteria bacterium Ellin345. It is found without the PEP-CTERM domain in several other species, including Burkholderia ambifaria, Gloeobacter violaceus PCC 7421, and three copies in the Acanthamoeba polyphaga mimivirus.
Probab=87.32 E-value=22 Score=32.01 Aligned_cols=228 Identities=11% Similarity=0.073 Sum_probs=112.8
Q ss_pred CEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeec
Q 010390 152 SIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKD 231 (512)
Q Consensus 152 ~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~ 231 (512)
.-+.|+++|.+ .+.++...-+...+||.......-.. +.+........ -.......+.+.|+..
T Consensus 24 N~WGia~~p~~-~~WVadngT~~~TlYdg~~~~~~g~~--~~L~vtiP~~~-------------~~~~~~~PTGiVfN~~ 87 (336)
T TIGR03118 24 NAWGLSYRPGG-PFWVANTGTGTATLYVGNPDTQPLVQ--DPLVVVIPAPP-------------PLAAEGTPTGQVFNGS 87 (336)
T ss_pred ccceeEecCCC-CEEEecCCcceEEeecCCcccccCCc--cceEEEecCCC-------------CCCCCCCccEEEEeCC
Confidence 45789999987 77777777789999998732211100 00110000000 0011234566666533
Q ss_pred CCE------------EEEEeecCCeEEEEeccCccc---eecccCCCccccccccccccCeeEEEeC--CCCCEEEEEe-
Q 010390 232 EVS------------IATASAVNSIVKFWDTRNLKA---QITQAWPHAESSSAKETRLHGISSLSQD--SNGVFLTASC- 293 (512)
Q Consensus 232 ~~~------------l~~~g~~dg~i~iwd~~~~~~---~~~~~~~~~~~~~~~~~~~~~i~~~~~~--~~~~~l~~~~- 293 (512)
... ++. +++||+|.-|...-... ....... ......-...+++. ..+.+|+.+.
T Consensus 88 ~~F~vt~~g~~~~a~Fif-~tEdGTisaW~p~v~~t~~~~~~~~~d-------~s~~gavYkGLAi~~~~~~~~LYaadF 159 (336)
T TIGR03118 88 DTFVVSGEGITGPSRFLF-VTEDGTLSGWAPALGTTRMTRAEIVVD-------ASQQGNVYKGLAVGPTGGGDYLYAANF 159 (336)
T ss_pred CceEEcCCCcccceeEEE-EeCCceEEeecCcCCcccccccEEEEc-------cCCCcceeeeeEEeecCCCceEEEecc
Confidence 221 333 44899999998543222 0000000 00011112334444 3456666665
Q ss_pred cCCeEEEEEcccCCCCceEeee--------------eceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCcee
Q 010390 294 MDHRIYLYNVLQLDKGPIQHFS--------------GCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKL 359 (512)
Q Consensus 294 ~dg~i~i~d~~~~~~~~~~~~~--------------~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~ 359 (512)
..++|.+||-.-.....-..+. .....-+|+=..-.++.+.=+.|-.-|.|-+||+...-.....-
T Consensus 160 ~~g~IDVFd~~f~~~~~~g~F~DP~iPagyAPFnIqnig~~lyVtYA~qd~~~~d~v~G~G~G~VdvFd~~G~l~~r~as 239 (336)
T TIGR03118 160 RQGRIDVFKGSFRPPPLPGSFIDPALPAGYAPFNVQNLGGTLYVTYAQQDADRNDEVAGAGLGYVNVFTLNGQLLRRVAS 239 (336)
T ss_pred CCCceEEecCccccccCCCCccCCCCCCCCCCcceEEECCeEEEEEEecCCcccccccCCCcceEEEEcCCCcEEEEecc
Confidence 6789999985321100000000 00011112212223333333445556789999987543211112
Q ss_pred ccccCCeEEEEeCCC-----CCCeEEEEeCCCcEEEEeCCCCccccccc
Q 010390 360 KSHDGEVTAVNWCPN-----EAGKIVTSSDDYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 360 ~~h~~~v~~v~~~~~-----~~~~l~s~~~dg~i~vwd~~~~~~~~~~~ 403 (512)
.+.-..-+.|+..|- ...+|+--=-||+|..+|..+++.+..+.
T Consensus 240 ~g~LNaPWG~a~APa~FG~~sg~lLVGNFGDG~InaFD~~sG~~~g~L~ 288 (336)
T TIGR03118 240 SGRLNAPWGLAIAPESFGSLSGALLVGNFGDGTINAYDPQSGAQLGQLL 288 (336)
T ss_pred CCcccCCceeeeChhhhCCCCCCeEEeecCCceeEEecCCCCceeeeec
Confidence 233345667776552 11566665679999999999888665533
No 461
>COG5167 VID27 Protein involved in vacuole import and degradation [Intracellular trafficking and secretion]
Probab=87.06 E-value=14 Score=35.57 Aligned_cols=121 Identities=12% Similarity=0.086 Sum_probs=70.1
Q ss_pred ceeccccCCCcEEEEEEecCCC-------EEEEEeCCCcEEEEeCCC-CeeeecccCcCCCEEEEEeeC---CCCCeEEE
Q 010390 100 RISDWVAHQNAIFDLCWIKEDT-------NILTASGDQTIKIWDAEK-KKCTGALMGHTGSIKSLCSHP---TNSDILVS 168 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~-------~l~s~~~dg~i~iwd~~~-~~~~~~~~~h~~~v~~l~~~~---~~~~~l~s 168 (512)
.+..+.-|... -+.|.|+.+ .-+.|-.+..|.-.|.+- |..+.... ....++.-.|+. ....+++.
T Consensus 502 vveeW~~~ddv--vVqy~p~~kf~qmt~eqtlvGlS~~svFrIDPR~~gNKi~v~e-sKdY~tKn~Fss~~tTesGyIa~ 578 (776)
T COG5167 502 VVEEWDLKDDV--VVQYNPYFKFQQMTDEQTLVGLSDYSVFRIDPRARGNKIKVVE-SKDYKTKNKFSSGMTTESGYIAA 578 (776)
T ss_pred eeeEeecCCcc--eeecCCchhHHhcCccceEEeecccceEEecccccCCceeeee-ehhccccccccccccccCceEEE
Confidence 36666666554 567777421 233344555566566543 21121111 122222222322 11258999
Q ss_pred EeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEE
Q 010390 169 GSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFW 248 (512)
Q Consensus 169 ~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iw 248 (512)
++..|-|++||--...... .+.+....|..+....+|..++++| ...+.+-
T Consensus 579 as~kGDirLyDRig~rAKt---------------------------alP~lG~aIk~idvta~Gk~ilaTC--k~yllL~ 629 (776)
T COG5167 579 ASRKGDIRLYDRIGKRAKT---------------------------ALPGLGDAIKHIDVTANGKHILATC--KNYLLLT 629 (776)
T ss_pred ecCCCceeeehhhcchhhh---------------------------cCcccccceeeeEeecCCcEEEEee--cceEEEE
Confidence 9999999999954322211 2334456788899999999999876 5678887
Q ss_pred eccC
Q 010390 249 DTRN 252 (512)
Q Consensus 249 d~~~ 252 (512)
|++-
T Consensus 630 d~~i 633 (776)
T COG5167 630 DVPI 633 (776)
T ss_pred eccc
Confidence 7663
No 462
>KOG1983 consensus Tomosyn and related SNARE-interacting proteins [Intracellular trafficking, secretion, and vesicular transport]
Probab=86.96 E-value=14 Score=39.89 Aligned_cols=33 Identities=12% Similarity=0.112 Sum_probs=26.9
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCe
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIWDAEKKK 141 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~ 141 (512)
.....++|+|....++.+...|.|+++-...-+
T Consensus 36 ~~~~~~afD~~q~llai~t~tg~i~~yg~~~ve 68 (993)
T KOG1983|consen 36 STPSALAFDPTQGLLAIGTRTGAIKIYGQPGVE 68 (993)
T ss_pred CCCcceeeccccceEEEEEecccEEEecccceE
Confidence 455678899999999999999999999754433
No 463
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=86.94 E-value=7.3 Score=32.17 Aligned_cols=31 Identities=3% Similarity=0.262 Sum_probs=24.7
Q ss_pred CcEEEEEEecCC------CEEEEEeCCCcEEEEeCCC
Q 010390 109 NAIFDLCWIKED------TNILTASGDQTIKIWDAEK 139 (512)
Q Consensus 109 ~~V~~l~~s~~~------~~l~s~~~dg~i~iwd~~~ 139 (512)
..|.+++|||.| ..|++.+.++.|.||....
T Consensus 86 ~~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~ 122 (173)
T PF12657_consen 86 SQVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPG 122 (173)
T ss_pred ccEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCC
Confidence 379999999933 4677888899999998653
No 464
>PF02333 Phytase: Phytase; InterPro: IPR003431 Phytase (3.1.3.8 from EC) (phytate 3-phosphatase) is a secreted enzyme which hydrolyses phytate to release inorganic phosphate. This family appears to represent a novel enzyme that shows phytase activity () and has been shown to consist of a single structural unit with a six-bladed propeller folding architecture ().; GO: 0016158 3-phytase activity; PDB: 3AMS_A 3AMR_A 1QLG_A 2POO_A 1H6L_A 1CVM_A 1POO_A.
Probab=86.69 E-value=28 Score=32.72 Aligned_cols=205 Identities=10% Similarity=0.075 Sum_probs=103.1
Q ss_pred cCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEee----CCCCC--eEEEEeCC---CcEEEEeCCCCCCCCC
Q 010390 118 KEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH----PTNSD--ILVSGSRD---GSFAIWDLRCKSSPKS 188 (512)
Q Consensus 118 ~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~----~~~~~--~l~s~~~d---g~i~vwd~~~~~~~~~ 188 (512)
|...+|+....++-+.+||+. |+.++.+. .+.++.+..- -.+.. ++++...+ ..|++|.+.......
T Consensus 66 p~kSlIigTdK~~GL~VYdL~-Gk~lq~~~--~Gr~NNVDvrygf~l~g~~vDlavas~R~~g~n~l~~f~id~~~g~L- 141 (381)
T PF02333_consen 66 PAKSLIIGTDKKGGLYVYDLD-GKELQSLP--VGRPNNVDVRYGFPLNGKTVDLAVASDRSDGRNSLRLFRIDPDTGEL- 141 (381)
T ss_dssp GGG-EEEEEETTTEEEEEETT-S-EEEEE---SS-EEEEEEEEEEEETTEEEEEEEEEE-CCCT-EEEEEEEETTTTEE-
T ss_pred cccceEEEEeCCCCEEEEcCC-CcEEEeec--CCCcceeeeecceecCCceEEEEEEecCcCCCCeEEEEEecCCCCcc-
Confidence 355677878888889999986 44555553 2344444432 12212 23333332 469999876321100
Q ss_pred ccccceeeecccccccccccccccceecccccccEEEEEEee---cCCEEEEEeecCCeEEEEeccCc-c--ceecccCC
Q 010390 189 NCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLK---DEVSIATASAVNSIVKFWDTRNL-K--AQITQAWP 262 (512)
Q Consensus 189 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~---~~~~l~~~g~~dg~i~iwd~~~~-~--~~~~~~~~ 262 (512)
... .............++.+|... ++...+.....+|.+..|.+... . ......
T Consensus 142 -------~~v-----------~~~~~p~~~~~~e~yGlcly~~~~~g~~ya~v~~k~G~~~Qy~L~~~~~g~v~~~lV-- 201 (381)
T PF02333_consen 142 -------TDV-----------TDPAAPIATDLSEPYGLCLYRSPSTGALYAFVNGKDGRVEQYELTDDGDGKVSATLV-- 201 (381)
T ss_dssp -------EE------------CBTTC-EE-SSSSEEEEEEEE-TTT--EEEEEEETTSEEEEEEEEE-TTSSEEEEEE--
T ss_pred -------eEc-----------CCCCcccccccccceeeEEeecCCCCcEEEEEecCCceEEEEEEEeCCCCcEeeEEE--
Confidence 000 000000111123467777643 45666666778999988887532 1 111110
Q ss_pred CccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc---eEeeeeceeceeEEEEEE--CCCC-CEE-
Q 010390 263 HAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP---IQHFSGCRIESFYVKSEI--CPNA-SHI- 335 (512)
Q Consensus 263 ~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~---~~~~~~~~~~~~~~~~~~--s~~~-~~l- 335 (512)
....-...+..+..+.....|+.+-.+.-|+-|+........ +....+.....-+-.+++ ..++ .||
T Consensus 202 ------R~f~~~sQ~EGCVVDDe~g~LYvgEE~~GIW~y~Aep~~~~~~~~v~~~~g~~l~aDvEGlaly~~~~g~gYLi 275 (381)
T PF02333_consen 202 ------REFKVGSQPEGCVVDDETGRLYVGEEDVGIWRYDAEPEGGNDRTLVASADGDGLVADVEGLALYYGSDGKGYLI 275 (381)
T ss_dssp ------EEEE-SS-EEEEEEETTTTEEEEEETTTEEEEEESSCCC-S--EEEEEBSSSSB-S-EEEEEEEE-CCC-EEEE
T ss_pred ------EEecCCCcceEEEEecccCCEEEecCccEEEEEecCCCCCCcceeeecccccccccCccceEEEecCCCCeEEE
Confidence 112223468889999888899999999888888875432221 111122222222333433 3443 344
Q ss_pred EEecCCCCEEEEecCCC
Q 010390 336 LSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 336 ~~g~~dg~i~iw~~~~~ 352 (512)
++.-.+++..||+....
T Consensus 276 vSsQG~~sf~Vy~r~~~ 292 (381)
T PF02333_consen 276 VSSQGDNSFAVYDREGP 292 (381)
T ss_dssp EEEGGGTEEEEEESSTT
T ss_pred EEcCCCCeEEEEecCCC
Confidence 55555778999998754
No 465
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=86.57 E-value=11 Score=33.88 Aligned_cols=94 Identities=14% Similarity=0.214 Sum_probs=56.3
Q ss_pred CCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEe------CCCcEEEEeCCCCeeeeccc
Q 010390 74 DGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTAS------GDQTIKIWDAEKKKCTGALM 147 (512)
Q Consensus 74 dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~------~dg~i~iwd~~~~~~~~~~~ 147 (512)
...|++||..+.+- ...-.+-.+.|+++.|..+.+.++.|. ....+..||+.+..-...-.
T Consensus 15 C~~lC~yd~~~~qW-------------~~~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~ 81 (281)
T PF12768_consen 15 CPGLCLYDTDNSQW-------------SSPGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGG 81 (281)
T ss_pred CCEEEEEECCCCEe-------------ecCCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCC
Confidence 45699999876543 111123457899999986666666654 35568889987765322211
Q ss_pred ----CcCCCEEEEEeeCCCC-CeEEEEe-CCC--cEEEEeC
Q 010390 148 ----GHTGSIKSLCSHPTNS-DILVSGS-RDG--SFAIWDL 180 (512)
Q Consensus 148 ----~h~~~v~~l~~~~~~~-~~l~s~~-~dg--~i~vwd~ 180 (512)
.-.++|..+.+...+. ++.++|. .+| .|..||=
T Consensus 82 ~~s~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dG 122 (281)
T PF12768_consen 82 GSSNSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDG 122 (281)
T ss_pred cccccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcC
Confidence 1247888888754443 3444444 333 4555653
No 466
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=86.55 E-value=46 Score=34.99 Aligned_cols=69 Identities=7% Similarity=0.015 Sum_probs=46.6
Q ss_pred CCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCC--------EEEEEeeCC---------------CCCeEEEEeCCCcE
Q 010390 119 EDTNILTASGDQTIKIWDAEKKKCTGALMGHTGS--------IKSLCSHPT---------------NSDILVSGSRDGSF 175 (512)
Q Consensus 119 ~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~--------v~~l~~~~~---------------~~~~l~s~~~dg~i 175 (512)
.+..|+.++.++.|.-.|..+|+.+..+...... ...+.+... ....++.++.|+.|
T Consensus 193 vgg~lYv~t~~~~V~ALDa~TGk~lW~~d~~~~~~~~~~~~~cRGvay~~~p~~~~~~~~~~~p~~~~~rV~~~T~Dg~L 272 (764)
T TIGR03074 193 VGDTLYLCTPHNKVIALDAATGKEKWKFDPKLKTEAGRQHQTCRGVSYYDAPAAAAGPAAPAAPADCARRIILPTSDARL 272 (764)
T ss_pred ECCEEEEECCCCeEEEEECCCCcEEEEEcCCCCcccccccccccceEEecCCcccccccccccccccCCEEEEecCCCeE
Confidence 3557777888899999999999888776532210 122333211 12478888889999
Q ss_pred EEEeCCCCCCCC
Q 010390 176 AIWDLRCKSSPK 187 (512)
Q Consensus 176 ~vwd~~~~~~~~ 187 (512)
.-.|.++++...
T Consensus 273 iALDA~TGk~~W 284 (764)
T TIGR03074 273 IALDADTGKLCE 284 (764)
T ss_pred EEEECCCCCEEE
Confidence 999998887654
No 467
>PF11715 Nup160: Nucleoporin Nup120/160; InterPro: IPR021717 Nup120 is conserved from fungi to plants to humans, and is homologous with the Nup160 of vertebrates. The nuclear core complex, or NPC, mediates macromolecular transport across the nuclear envelope. Deletion of the NUP120 gene causes clustering of NPCs at one side of the nuclear envelope, moderate nucleolar fragmentation and slower cell growth []. The vertebrate NPC is estimated to contain between 30 and 60 different proteins. most of which are not known. Two important ones in creating the nucleoporin basket are Nup98 and Nup153, and Nup120, in conjunction with Nup 133, interacts with these two and itself plays a role in mRNA export []. Nup160, Nup133, Nup96, and Nup107 are all targets of phosphorylation. The phosphorylation sites are clustered mainly at the N-terminal regions of these proteins, which are predicted to be natively disordered. The entire Nup107-160 subcomplex is stable throughout the cell cycle, thus it seems unlikely that phosphorylation affects interactions within the Nup107-160 subcomplex, but rather that it regulates the association of the subcomplex with the NPC and other proteins []. ; PDB: 3F7F_D 3H7N_D 3HXR_A.
Probab=86.33 E-value=2.2 Score=43.07 Aligned_cols=37 Identities=27% Similarity=0.505 Sum_probs=27.4
Q ss_pred CCeEEEEeCC----CCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 364 GEVTAVNWCP----NEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 364 ~~v~~v~~~~----~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
+.+..++.+. +. .+|++.+.|+++|+||+.+++++..
T Consensus 215 ~~~~~~~~~~~~~~~~-~~l~tl~~D~~LRiW~l~t~~~~~~ 255 (547)
T PF11715_consen 215 SVAASLAVSSSEINDD-TFLFTLSRDHTLRIWSLETGQCLAT 255 (547)
T ss_dssp --EEEEEE-----ETT-TEEEEEETTSEEEEEETTTTCEEEE
T ss_pred CccceEEEecceeCCC-CEEEEEeCCCeEEEEECCCCeEEEE
Confidence 3455666665 44 7999999999999999999999554
No 468
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=85.57 E-value=36 Score=33.11 Aligned_cols=116 Identities=10% Similarity=0.095 Sum_probs=62.0
Q ss_pred cccEEEEEEeecCCEEEEEeec-CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCC------CEEEEE
Q 010390 220 SMSITSVLYLKDEVSIATASAV-NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNG------VFLTAS 292 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~------~~l~~~ 292 (512)
-...+.|+|.|++..+++ - . .|.|++++..+.........+.. ...........|+++|+- .+|++.
T Consensus 29 L~~Pw~maflPDG~llVt-E-R~~G~I~~v~~~~~~~~~~~~l~~v----~~~~ge~GLlglal~PdF~~~~~n~~lYvs 102 (454)
T TIGR03606 29 LNKPWALLWGPDNQLWVT-E-RATGKILRVNPETGEVKVVFTLPEI----VNDAQHNGLLGLALHPDFMQEKGNPYVYIS 102 (454)
T ss_pred CCCceEEEEcCCCeEEEE-E-ecCCEEEEEeCCCCceeeeecCCce----eccCCCCceeeEEECCCccccCCCcEEEEE
Confidence 446889999999976665 2 4 59999998665432211111110 011135778999999874 244444
Q ss_pred e----------cCCeEEEEEcccCCC---CceEeeeece--eceeEEEEEECCCCCEEEEecCC
Q 010390 293 C----------MDHRIYLYNVLQLDK---GPIQHFSGCR--IESFYVKSEICPNASHILSGSSD 341 (512)
Q Consensus 293 ~----------~dg~i~i~d~~~~~~---~~~~~~~~~~--~~~~~~~~~~s~~~~~l~~g~~d 341 (512)
. ....|.-|.+..... .....+.... ....-..++|.|||.+.++.++.
T Consensus 103 yt~~~~~~~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~GgrI~FgPDG~LYVs~GD~ 166 (454)
T TIGR03606 103 YTYKNGDKELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHNGGRLVFGPDGKIYYTIGEQ 166 (454)
T ss_pred EeccCCCCCccCCcEEEEEEecCCCCccccceEEEecCCCCCCcCCceEEECCCCcEEEEECCC
Confidence 2 123455565532111 1111121111 11223468899999877655543
No 469
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=85.56 E-value=30 Score=33.53 Aligned_cols=31 Identities=16% Similarity=0.183 Sum_probs=25.4
Q ss_pred cCeeEEEeCCCCCEEEEEecCCeEEEEEccc
Q 010390 275 HGISSLSQDSNGVFLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 275 ~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~ 305 (512)
..|..+...+..+.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSRRLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTTTEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCcCEEEEEeCCCcEEEEEEeC
Confidence 3499999999889999999999999999965
No 470
>PF12657 TFIIIC_delta: Transcription factor IIIC subunit delta N-term; InterPro: IPR024761 This entry represents a domain found towards the N terminus of the 90 kDa subunit of transcription factor IIIC (also known as subunit 9 in yeast []). The whole subunit is involved in RNA polymerase III-mediated transcription. It is possible that this N-terminal domain interacts with TFIIIC subunit 8 [].
Probab=85.13 E-value=7.8 Score=32.00 Aligned_cols=32 Identities=13% Similarity=0.342 Sum_probs=26.7
Q ss_pred CeEEEEeCCCC-----CCeEEEEeCCCcEEEEeCCCC
Q 010390 365 EVTAVNWCPNE-----AGKIVTSSDDYTVRLWSLENS 396 (512)
Q Consensus 365 ~v~~v~~~~~~-----~~~l~s~~~dg~i~vwd~~~~ 396 (512)
.|.+++|||.| .-+|++...+|.|.||.-...
T Consensus 87 ~vv~~aWSP~Gl~~~~rClLavLTs~~~l~l~~~~~~ 123 (173)
T PF12657_consen 87 QVVSAAWSPSGLGPNGRCLLAVLTSNGRLSLYGPPGN 123 (173)
T ss_pred cEEEEEECCCCCCCCCceEEEEEcCCCeEEEEecCCC
Confidence 78999999954 247999999999999997754
No 471
>PF14727 PHTB1_N: PTHB1 N-terminus
Probab=84.99 E-value=37 Score=32.57 Aligned_cols=126 Identities=17% Similarity=0.180 Sum_probs=76.4
Q ss_pred ccCCcceEEEEEecCC-C-cEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccC--CCcEEEEEEec----C-
Q 010390 49 EETPPLAVSFCKTSKN-S-HIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAH--QNAIFDLCWIK----E- 119 (512)
Q Consensus 49 h~~~v~~v~~~~~s~~-~-~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h--~~~V~~l~~s~----~- 119 (512)
-..||..|.+-.|.+. . ..||+ -.-..+.||.+......... .....+.....| ......+++-| .
T Consensus 70 l~~PILqv~~G~F~s~~~~~~LaV-LhP~kl~vY~v~~~~g~~~~----g~~~~L~~~yeh~l~~~a~nm~~G~Fgg~~~ 144 (418)
T PF14727_consen 70 LKDPILQVECGKFVSGSEDLQLAV-LHPRKLSVYSVSLVDGTVEH----GNQYQLELIYEHSLQRTAYNMCCGPFGGVKG 144 (418)
T ss_pred cCCcEEEEEeccccCCCCcceEEE-ecCCEEEEEEEEecCCCccc----CcEEEEEEEEEEecccceeEEEEEECCCCCC
Confidence 4589999999888443 3 35665 55678999988432211000 111122223333 23444455444 2
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCC
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLR 181 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~ 181 (512)
.++|..-+.||.+.+++-+.-...+.+.. ---.-.+.|.+.. ..|++++.+..|..|...
T Consensus 145 ~~~IcVQS~DG~L~~feqe~~~f~~~lp~-~llPgPl~Y~~~t-Dsfvt~sss~~l~~Yky~ 204 (418)
T PF14727_consen 145 RDFICVQSMDGSLSFFEQESFAFSRFLPD-FLLPGPLCYCPRT-DSFVTASSSWTLECYKYQ 204 (418)
T ss_pred ceEEEEEecCceEEEEeCCcEEEEEEcCC-CCCCcCeEEeecC-CEEEEecCceeEEEecHH
Confidence 36788889999999999665544444433 2222346777766 789999988899988764
No 472
>KOG4659 consensus Uncharacterized conserved protein (Rhs family) [Function unknown]
Probab=84.94 E-value=65 Score=35.31 Aligned_cols=27 Identities=11% Similarity=-0.016 Sum_probs=17.9
Q ss_pred cEEEEEEeecCCEEEEEeecCCeEEEEecc
Q 010390 222 SITSVLYLKDEVSIATASAVNSIVKFWDTR 251 (512)
Q Consensus 222 ~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~ 251 (512)
....++++.+|...++ +...|++.|..
T Consensus 476 ~PkGIa~dk~g~lYfa---D~t~IR~iD~~ 502 (1899)
T KOG4659|consen 476 FPKGIAFDKMGNLYFA---DGTRIRVIDTT 502 (1899)
T ss_pred cCCceeEccCCcEEEe---cccEEEEeccC
Confidence 4556788887776665 34567777755
No 473
>PF10395 Utp8: Utp8 family; InterPro: IPR018843 Utp8 is an essential component of the nuclear tRNA export machinery in Saccharomyces cerevisiae (Baker's yeast). It is a tRNA binding protein that acts at a step between tRNA maturation /aminoacylation, and translocation of the tRNA across the nuclear pore complex [].
Probab=84.65 E-value=49 Score=33.64 Aligned_cols=89 Identities=15% Similarity=0.157 Sum_probs=50.1
Q ss_pred cCCcceEEEEEecCCCcEEEEeeCCCc-EEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeC
Q 010390 50 ETPPLAVSFCKTSKNSHIFAVSDEDGY-VSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASG 128 (512)
Q Consensus 50 ~~~v~~v~~~~~s~~~~~latg~~dg~-i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~ 128 (512)
+..|.|+.......+.++.++|-.++. -++-.+..+...........+......++ -.+.|..+.|.++++.+++...
T Consensus 71 t~iV~~~dV~~~~~~~~~~~~glt~rKk~~ll~i~~~~~~~~~~~~~~e~~~~~~~k-l~~kvv~Ik~~~~~~~I~vvl~ 149 (670)
T PF10395_consen 71 TTIVECCDVLEKSDGKKLYCVGLTERKKFKLLLIERKVGSTEDGTVNSETTNEFELK-LDDKVVGIKFSSDGKIIYVVLE 149 (670)
T ss_pred CceEEEEEeEecCCCcEEEEEEEeeCCeeEEEEEEccCccccccccCccccceEEEE-cccceEEEEEecCCCEEEEEEc
Confidence 445666666554443456666644433 34433333211000000001111122222 3678999999999999999999
Q ss_pred CCcEEEEeCCC
Q 010390 129 DQTIKIWDAEK 139 (512)
Q Consensus 129 dg~i~iwd~~~ 139 (512)
+|.|.+||...
T Consensus 150 nG~i~~~d~~~ 160 (670)
T PF10395_consen 150 NGSIQIYDFSE 160 (670)
T ss_pred CCcEEEEeccc
Confidence 99999999943
No 474
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=84.46 E-value=23 Score=29.78 Aligned_cols=128 Identities=13% Similarity=0.081 Sum_probs=60.2
Q ss_pred eecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCc--eEeeee
Q 010390 239 SAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGP--IQHFSG 316 (512)
Q Consensus 239 g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~--~~~~~~ 316 (512)
.-.+|.-..+|.++.+..-.... ++ .-..+ ..|+..|+.+.....++.-|..+..... .....+
T Consensus 107 Tw~egvaf~~d~~t~~~lg~~~y---------~G---eGWgL--t~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g 172 (262)
T COG3823 107 TWKEGVAFKYDADTLEELGRFSY---------EG---EGWGL--TSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDG 172 (262)
T ss_pred EeccceeEEEChHHhhhhccccc---------CC---cceee--ecCCcceEeeCCceEEEecCHHHhhhcceEEEEECC
Confidence 44688889999998776654322 11 12222 2355557776666666666654322211 111112
Q ss_pred ceeceeEEEEEECCCCCEEEEe----------cCCCCEEEE-ecCCCCCCCceeccccCCeEEEEeCCCCCCeEEEE
Q 010390 317 CRIESFYVKSEICPNASHILSG----------SSDGNAYVW-QVNKPQADPIKLKSHDGEVTAVNWCPNEAGKIVTS 382 (512)
Q Consensus 317 ~~~~~~~~~~~~s~~~~~l~~g----------~~dg~i~iw-~~~~~~~~~~~~~~h~~~v~~v~~~~~~~~~l~s~ 382 (512)
.++.. +.-+.| -+|...|-. -..|.|.-| |+..-......-..|..-.+.+++.|++.+++++|
T Consensus 173 ~pv~~-LNELE~-VdG~lyANVw~t~~I~rI~p~sGrV~~widlS~L~~~~~~~~~~~nvlNGIA~~~~~~r~~iTG 247 (262)
T COG3823 173 VPVSK-LNELEW-VDGELYANVWQTTRIARIDPDSGRVVAWIDLSGLLKELNLDKSNDNVLNGIAHDPQQDRFLITG 247 (262)
T ss_pred eeccc-ccceee-eccEEEEeeeeecceEEEcCCCCcEEEEEEccCCchhcCccccccccccceeecCcCCeEEEec
Confidence 11110 111111 122222111 112333333 44332222222334566788999999886666666
No 475
>PF07676 PD40: WD40-like Beta Propeller Repeat; InterPro: IPR011659 WD-40 repeats (also known as WD or beta-transducin repeats) are short ~40 amino acid motifs, often terminating in a Trp-Asp (W-D) dipeptide. WD40 repeats usually assume a 7-8 bladed beta-propeller fold, but proteins have been found with 4 to 16 repeated units, which also form a circularised beta-propeller structure. WD-repeat proteins are a large family found in all eukaryotes and are implicated in a variety of functions ranging from signal transduction and transcription regulation to cell cycle control and apoptosis. Repeated WD40 motifs act as a site for protein-protein interaction, and proteins containing WD40 repeats are known to serve as platforms for the assembly of protein complexes or mediators of transient interplay among other proteins. The specificity of the proteins is determined by the sequences outside the repeats themselves. Examples of such complexes are G proteins (beta subunit is a beta-propeller), TAFII transcription factor, and E3 ubiquitin ligase [, ]. In Arabidopsis spp., several WD40-containing proteins act as key regulators of plant-specific developmental events. This region appears to be related to the IPR001680 from INTERPRO repeat. This model is likely to miss copies within a sequence.; PDB: 2HQS_D 1C5K_A 2IVZ_A 2W8B_D 3IAX_A 1CRZ_A 1N6F_D 1N6D_C 1N6E_C 1K32_A ....
Probab=84.40 E-value=4.3 Score=23.39 Aligned_cols=29 Identities=17% Similarity=0.021 Sum_probs=21.9
Q ss_pred cccEEEEEEeecCCEEEEEeecC--CeEEEE
Q 010390 220 SMSITSVLYLKDEVSIATASAVN--SIVKFW 248 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~d--g~i~iw 248 (512)
...-....|+|||+.++.++..+ |...||
T Consensus 8 ~~~~~~p~~SpDGk~i~f~s~~~~~g~~diy 38 (39)
T PF07676_consen 8 PGDDGSPAWSPDGKYIYFTSNRNDRGSFDIY 38 (39)
T ss_dssp SSSEEEEEE-TTSSEEEEEEECT--SSEEEE
T ss_pred CccccCEEEecCCCEEEEEecCCCCCCcCEE
Confidence 34677889999999999988777 666665
No 476
>TIGR02276 beta_rpt_yvtn 40-residue YVTN family beta-propeller repeat. This repeat of about 40 amino acids is found in up to 14 copies per protein. Archaea Methanosarcina mazei and Methanosarcina acetivorans each have over 10 genes that encode tandem copies of this repeat, which is also found in other species. PSIPRED predicts with high confidence that each 40-residue repeats contains four beta strands. This model overlaps somewhat with the NHL repeat (Pfam pfam01436) and also shows sequence similarity to the WD domain, G-beta repeat (Pfam pfam00400).
Probab=84.33 E-value=4.4 Score=23.69 Aligned_cols=31 Identities=16% Similarity=0.341 Sum_probs=23.2
Q ss_pred cCCCEEEEEe-CCCcEEEEeCCCCeeeecccC
Q 010390 118 KEDTNILTAS-GDQTIKIWDAEKKKCTGALMG 148 (512)
Q Consensus 118 ~~~~~l~s~~-~dg~i~iwd~~~~~~~~~~~~ 148 (512)
|++++|+++. .+++|.++|..+++.+..+..
T Consensus 1 pd~~~lyv~~~~~~~v~~id~~~~~~~~~i~v 32 (42)
T TIGR02276 1 PDGTKLYVTNSGSNTVSVIDTATNKVIATIPV 32 (42)
T ss_pred CCCCEEEEEeCCCCEEEEEECCCCeEEEEEEC
Confidence 4677666544 578999999988887777654
No 477
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=83.90 E-value=33 Score=35.11 Aligned_cols=71 Identities=15% Similarity=0.245 Sum_probs=43.6
Q ss_pred EEEECCCCCEEEEecCCC-----CEEEEecCCCCCCCc-eeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCc
Q 010390 325 KSEICPNASHILSGSSDG-----NAYVWQVNKPQADPI-KLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSR 397 (512)
Q Consensus 325 ~~~~s~~~~~l~~g~~dg-----~i~iw~~~~~~~~~~-~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~ 397 (512)
.+.|-|+|..+++-+.|| .|.++.-+.-+.-.. .-.+.+..+..++|+-.. ..+ .....+.|++|-..+-.
T Consensus 251 ~LSWkpqgS~~ati~td~~~~S~~ViFfErNGLrHGef~lr~~~dEk~~~~~wn~~s-~vl-av~~~n~~~lwttkNyh 327 (1243)
T COG5290 251 QLSWKPQGSKYATIGTDGCSTSESVIFFERNGLRHGEFDLRVGCDEKAFLENWNLLS-TVL-AVAEGNLLKLWTTKNYH 327 (1243)
T ss_pred ccccccCCceeeeeccCCCCCcceEEEEccCCcccCCccccCCchhhhhhhhhhHHH-HHH-HHhhcceEEEEEccceE
Confidence 488999999999877554 366665543322111 122344567778887654 333 34456689999877654
No 478
>TIGR03606 non_repeat_PQQ dehydrogenase, PQQ-dependent, s-GDH family. PQQ, or pyrroloquinoline-quinone, serves as a cofactor for a number of sugar and alcohol dehydrogenases in a limited number of bacterial species. Most characterized PQQ-dependent enzymes have multiple repeats of a sequence region described by pfam01011 (PQQ enzyme repeat), but this protein family in unusual in lacking that repeat. Below the noise cutoff are related proteins mostly from species that lack PQQ biosynthesis.
Probab=83.81 E-value=28 Score=33.77 Aligned_cols=108 Identities=8% Similarity=0.000 Sum_probs=59.1
Q ss_pred CeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeec---eeceeEEEEEECCCC------CEEEEec-------
Q 010390 276 GISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGC---RIESFYVKSEICPNA------SHILSGS------- 339 (512)
Q Consensus 276 ~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~---~~~~~~~~~~~s~~~------~~l~~g~------- 339 (512)
....|+|.||+++|++--..|.|++++-.......+..+... ....-...++++|+- .+|....
T Consensus 31 ~Pw~maflPDG~llVtER~~G~I~~v~~~~~~~~~~~~l~~v~~~~ge~GLlglal~PdF~~~~~n~~lYvsyt~~~~~~ 110 (454)
T TIGR03606 31 KPWALLWGPDNQLWVTERATGKILRVNPETGEVKVVFTLPEIVNDAQHNGLLGLALHPDFMQEKGNPYVYISYTYKNGDK 110 (454)
T ss_pred CceEEEEcCCCeEEEEEecCCEEEEEeCCCCceeeeecCCceeccCCCCceeeEEECCCccccCCCcEEEEEEeccCCCC
Confidence 467899999998777665579999998544322222222111 113456789999874 2443321
Q ss_pred ---CCCCEEEEecCCCC----CCCceec------cccCCeEEEEeCCCCCCeEEEEeCCC
Q 010390 340 ---SDGNAYVWQVNKPQ----ADPIKLK------SHDGEVTAVNWCPNEAGKIVTSSDDY 386 (512)
Q Consensus 340 ---~dg~i~iw~~~~~~----~~~~~~~------~h~~~v~~v~~~~~~~~~l~s~~~dg 386 (512)
....|.-|.+.... .....+. .|. -..|+|.||+ .++++.++.+
T Consensus 111 ~~~~~~~I~R~~l~~~~~~l~~~~~Il~~lP~~~~H~--GgrI~FgPDG-~LYVs~GD~g 167 (454)
T TIGR03606 111 ELPNHTKIVRYTYDKSTQTLEKPVDLLAGLPAGNDHN--GGRLVFGPDG-KIYYTIGEQG 167 (454)
T ss_pred CccCCcEEEEEEecCCCCccccceEEEecCCCCCCcC--CceEEECCCC-cEEEEECCCC
Confidence 12234445543211 0111121 232 3467799999 6777666543
No 479
>COG4590 ABC-type uncharacterized transport system, permease component [General function prediction only]
Probab=83.74 E-value=5.3 Score=37.53 Aligned_cols=176 Identities=13% Similarity=0.089 Sum_probs=89.0
Q ss_pred eecccCcCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCCCCCccccceeeecccccccccccccccceeccccccc
Q 010390 143 TGALMGHTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMS 222 (512)
Q Consensus 143 ~~~~~~h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 222 (512)
+..+......|..+-..|++ +.+..-+. ..+.++++.+.........+.. .+. ....
T Consensus 213 i~~L~~~~~~v~qllL~Pdg-~~LYv~~g-~~~~v~~L~~r~l~~rkl~~ds--------------pg~-------~~~~ 269 (733)
T COG4590 213 IRLLSVPFSDVSQLLLTPDG-KTLYVRTG-SELVVALLDKRSLQIRKLVDDS--------------PGD-------SRHQ 269 (733)
T ss_pred hhhcCCCccchHhhEECCCC-CEEEEecC-CeEEEEeecccccchhhhhhcC--------------CCc-------hHHH
Confidence 34455555678888899998 66655544 5788888875543221100000 000 0001
Q ss_pred EE-EEEEeecCCEEEEEeecCCeEEEE-eccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEE
Q 010390 223 IT-SVLYLKDEVSIATASAVNSIVKFW-DTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYL 300 (512)
Q Consensus 223 v~-~~~~~~~~~~l~~~g~~dg~i~iw-d~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i 300 (512)
|+ .+.....+..+++ +..||.|.-| |.+........ + .........++..+.-..+.+-+++-+..|++.+
T Consensus 270 Vte~l~lL~Gg~SLLv-~~~dG~vsQWFdvr~~~~p~l~---h---~R~f~l~pa~~~~l~pe~~rkgF~~l~~~G~L~~ 342 (733)
T COG4590 270 VTEQLYLLSGGFSLLV-VHEDGLVSQWFDVRRDGQPHLN---H---IRNFKLAPAEVQFLLPETNRKGFYSLYRNGTLQS 342 (733)
T ss_pred HHHHHHHHhCceeEEE-EcCCCceeeeeeeecCCCCcce---e---eeccccCcccceeeccccccceEEEEcCCCceee
Confidence 11 1111223444554 5578888766 55543221100 0 0011111223333444444556777777888887
Q ss_pred EEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCC
Q 010390 301 YNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQA 354 (512)
Q Consensus 301 ~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~ 354 (512)
+.-............ ....-+++||.+.++++-. .|.|+++.+++...
T Consensus 343 f~st~~~~lL~~~~~-----~~~~~~~~Sp~~~~Ll~e~-~gki~~~~l~Nr~P 390 (733)
T COG4590 343 FYSTSEKLLLFERAY-----QAPQLVAMSPNQAYLLSED-QGKIRLAQLENRNP 390 (733)
T ss_pred eecccCcceehhhhh-----cCcceeeeCcccchheeec-CCceEEEEecCCCC
Confidence 764322111111111 1123378999999998765 46699999887654
No 480
>PRK13684 Ycf48-like protein; Provisional
Probab=83.48 E-value=39 Score=31.53 Aligned_cols=156 Identities=8% Similarity=-0.041 Sum_probs=80.7
Q ss_pred cccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEE
Q 010390 220 SMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIY 299 (512)
Q Consensus 220 ~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~ 299 (512)
...+.++.+.+++..+++ | ..|.+..- .+.+...... ........++++.+.++++.++++ ..|.++
T Consensus 172 ~g~~~~i~~~~~g~~v~~-g-~~G~i~~s-~~~gg~tW~~---------~~~~~~~~l~~i~~~~~g~~~~vg-~~G~~~ 238 (334)
T PRK13684 172 AGVVRNLRRSPDGKYVAV-S-SRGNFYST-WEPGQTAWTP---------HQRNSSRRLQSMGFQPDGNLWMLA-RGGQIR 238 (334)
T ss_pred cceEEEEEECCCCeEEEE-e-CCceEEEE-cCCCCCeEEE---------eeCCCcccceeeeEcCCCCEEEEe-cCCEEE
Confidence 346788888888765544 5 46655432 1111111111 111223568899999998877765 557665
Q ss_pred EEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCceec---cccCCeEEEEeCCCCC
Q 010390 300 LYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPIKLK---SHDGEVTAVNWCPNEA 376 (512)
Q Consensus 300 i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~~~~---~h~~~v~~v~~~~~~~ 376 (512)
+=....+..-.............+..+.+.+++..+++| .+|.+. ...+.++. ..... .-....+.+.|..++
T Consensus 239 ~~s~d~G~sW~~~~~~~~~~~~~l~~v~~~~~~~~~~~G-~~G~v~-~S~d~G~t-W~~~~~~~~~~~~~~~~~~~~~~- 314 (334)
T PRK13684 239 FNDPDDLESWSKPIIPEITNGYGYLDLAYRTPGEIWAGG-GNGTLL-VSKDGGKT-WEKDPVGEEVPSNFYKIVFLDPE- 314 (334)
T ss_pred EccCCCCCccccccCCccccccceeeEEEcCCCCEEEEc-CCCeEE-EeCCCCCC-CeECCcCCCCCcceEEEEEeCCC-
Confidence 321111111000011100011235567888887766655 466444 34443332 12221 122357788887665
Q ss_pred CeEEEEeCCCcEEEEeC
Q 010390 377 GKIVTSSDDYTVRLWSL 393 (512)
Q Consensus 377 ~~l~s~~~dg~i~vwd~ 393 (512)
.. +..+..|.|..|+-
T Consensus 315 ~~-~~~G~~G~il~~~~ 330 (334)
T PRK13684 315 KG-FVLGQRGVLLRYVG 330 (334)
T ss_pred ce-EEECCCceEEEecC
Confidence 44 55667888887764
No 481
>PF11635 Med16: Mediator complex subunit 16; InterPro: IPR021665 Mediator is a large complex of up to 33 proteins that is conserved from plants through fungi to humans - the number and representation of individual subunits varying with species [],[]. It is arranged into four different sections, a core, a head, a tail and a kinase-activity part, and the number of subunits within each of these is what varies with species. Overall, Mediator regulates the transcriptional activity of RNA polymerase II but it would appear that each of the four different sections has a slightly different function. Med16 is one of the subunits of the Tail portion of the Mediator complex and is required for lipopolysaccharide gene-expression []. Several members including the human protein, Q9Y2X0 from SWISSPROT, have one or more WD40 domains on them, PF00400 from PFAM.
Probab=83.42 E-value=65 Score=34.05 Aligned_cols=80 Identities=11% Similarity=0.051 Sum_probs=51.8
Q ss_pred ccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecc----cCCCccccccc----cccccCeeEEEeCCCCCEEE
Q 010390 219 ASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQ----AWPHAESSSAK----ETRLHGISSLSQDSNGVFLT 290 (512)
Q Consensus 219 ~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~----~~~~~~~~~~~----~~~~~~i~~~~~~~~~~~l~ 290 (512)
....|.++....-+..++. ...||.|.++|..+.+..... ..+........ ......+..++|+|++..++
T Consensus 258 ~~~~V~si~~~~~~~~v~~-~~~DGsI~~~dr~t~~~~~~~~~~~~~~~~v~s~~~~Gf~fp~~~~~~~vafSPt~c~~v 336 (753)
T PF11635_consen 258 LNKRVVSITSPELDIVVAF-AFSDGSIEFRDRNTMKELNETRTNGEPPNTVTSLFQAGFHFPCIQPPLHVAFSPTMCSLV 336 (753)
T ss_pred cCCeEEEEEecccCcEEEE-EEcCCeEEEEecCcchhhcccccccCCccccccccccccccccCCCCceEEECcccceEE
Confidence 3456888887777776666 448999999999988766544 11110000000 01112455689999999999
Q ss_pred EEecCCeEE
Q 010390 291 ASCMDHRIY 299 (512)
Q Consensus 291 ~~~~dg~i~ 299 (512)
.-..+|.+.
T Consensus 337 ~~~~~~~~~ 345 (753)
T PF11635_consen 337 QIDEDGKTK 345 (753)
T ss_pred EEecCCCce
Confidence 988888865
No 482
>PF03022 MRJP: Major royal jelly protein; InterPro: IPR003534 The major royal jelly proteins (MRJPs) comprise 12.5% of the mass, and 82-90% of the protein content [], of honeybee (Apis mellifera) royal jelly. Royal jelly is a substance secreted by the cephalic glands of nurse bees [] and it is used to trigger development of a queen bee from a bee larva. The biological function of the MRJPs is unknown, but they are believed to play a major role in nutrition due to their high essential amino acid content []. Two royal jelly proteins, MRJP3 and MRJP5, contain a tandem repeat that results from a high genetic variablility. This polymorphism may be useful for genotyping individual bees [].; PDB: 3Q6P_B 3Q6K_A 3Q6T_A 2QE8_B.
Probab=82.44 E-value=38 Score=30.72 Aligned_cols=160 Identities=13% Similarity=0.065 Sum_probs=81.8
Q ss_pred cccEEEEEEeecC-----CEEEEEeecCCeEEEEeccCccceecccCCC-cccc-------ccccccccCeeEEEeCC--
Q 010390 220 SMSITSVLYLKDE-----VSIATASAVNSIVKFWDTRNLKAQITQAWPH-AESS-------SAKETRLHGISSLSQDS-- 284 (512)
Q Consensus 220 ~~~v~~~~~~~~~-----~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~-~~~~-------~~~~~~~~~i~~~~~~~-- 284 (512)
.+.+..+.+.... .++..+-...+.|.++|+.+++......... ..+. ........++..++.+|
T Consensus 60 ~s~lndl~VD~~~~~~~~~~aYItD~~~~glIV~dl~~~~s~Rv~~~~~~~~p~~~~~~i~g~~~~~~dg~~gial~~~~ 139 (287)
T PF03022_consen 60 DSFLNDLVVDVRDGNCDDGFAYITDSGGPGLIVYDLATGKSWRVLHNSFSPDPDAGPFTIGGESFQWPDGIFGIALSPIS 139 (287)
T ss_dssp CGGEEEEEEECTTTTS-SEEEEEEETTTCEEEEEETTTTEEEEEETCGCTTS-SSEEEEETTEEEEETTSEEEEEE-TTS
T ss_pred ccccceEEEEccCCCCcceEEEEeCCCcCcEEEEEccCCcEEEEecCCcceeccccceeccCceEecCCCccccccCCCC
Confidence 4467777776532 3444545455689999999876543322111 0000 01112233477777765
Q ss_pred -CCCEEEEEecCC-eEEEEEcccCCCC----------ceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCC
Q 010390 285 -NGVFLTASCMDH-RIYLYNVLQLDKG----------PIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKP 352 (512)
Q Consensus 285 -~~~~l~~~~~dg-~i~i~d~~~~~~~----------~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~ 352 (512)
+++.|+-....+ .++--........ .+..+ +... .....++++++|.++++--..+.|..|+..+.
T Consensus 140 ~d~r~LYf~~lss~~ly~v~T~~L~~~~~~~~~~~~~~v~~l-G~k~-~~s~g~~~D~~G~ly~~~~~~~aI~~w~~~~~ 217 (287)
T PF03022_consen 140 PDGRWLYFHPLSSRKLYRVPTSVLRDPSLSDAQALASQVQDL-GDKG-SQSDGMAIDPNGNLYFTDVEQNAIGCWDPDGP 217 (287)
T ss_dssp TTS-EEEEEETT-SEEEEEEHHHHCSTT--HHH-HHHT-EEE-EE----SECEEEEETTTEEEEEECCCTEEEEEETTTS
T ss_pred CCccEEEEEeCCCCcEEEEEHHHhhCccccccccccccceec-cccC-CCCceEEECCCCcEEEecCCCCeEEEEeCCCC
Confidence 777777665443 3444432211111 11111 1111 12345788899999999989999999998863
Q ss_pred CCC--Ccee-cc-c-cCCeEEEEeCC--CCCCeEEEE
Q 010390 353 QAD--PIKL-KS-H-DGEVTAVNWCP--NEAGKIVTS 382 (512)
Q Consensus 353 ~~~--~~~~-~~-h-~~~v~~v~~~~--~~~~~l~s~ 382 (512)
-.. ...+ .. . -..+.++.+.+ ++ .+.+..
T Consensus 218 ~~~~~~~~l~~d~~~l~~pd~~~i~~~~~g-~L~v~s 253 (287)
T PF03022_consen 218 YTPENFEILAQDPRTLQWPDGLKIDPEGDG-YLWVLS 253 (287)
T ss_dssp B-GCCEEEEEE-CC-GSSEEEEEE-T--TS--EEEEE
T ss_pred cCccchheeEEcCceeeccceeeeccccCc-eEEEEE
Confidence 211 1111 11 1 24678888888 66 444443
No 483
>COG5276 Uncharacterized conserved protein [Function unknown]
Probab=82.14 E-value=37 Score=30.36 Aligned_cols=202 Identities=12% Similarity=0.061 Sum_probs=108.3
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccC--cCCCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCCCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMG--HTGSIKSLCSHPTNSDILVSGSRDGSFAIWDLRCKSS 185 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~--h~~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~~~~ 185 (512)
.+-+..+.++ +++...+..+.-++|.|+.+......+.. -.+--.++..+ | ++...+..|.-+.+.|+.+.+.
T Consensus 86 ~~l~~Dv~vs--e~yvyvad~ssGL~IvDIS~P~sP~~~~~lnt~gyaygv~vs--G-n~aYVadlddgfLivdvsdpss 160 (370)
T COG5276 86 RDLFADVRVS--EEYVYVADWSSGLRIVDISTPDSPTLIGFLNTDGYAYGVYVS--G-NYAYVADLDDGFLIVDVSDPSS 160 (370)
T ss_pred hhhhheeEec--ccEEEEEcCCCceEEEeccCCCCcceeccccCCceEEEEEec--C-CEEEEeeccCcEEEEECCCCCC
Confidence 3556677775 45666666777799999987654333221 11334444444 4 7888888677788899987654
Q ss_pred CCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccceecccCCCcc
Q 010390 186 PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAE 265 (512)
Q Consensus 186 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~ 265 (512)
..... +..........++.+ |++...+. .|+-+.+.|+.+.......
T Consensus 161 P~lag------------------------rya~~~~d~~~v~IS--Gn~AYvA~-~d~GL~ivDVSnp~sPvli------ 207 (370)
T COG5276 161 PQLAG------------------------RYALPGGDTHDVAIS--GNYAYVAW-RDGGLTIVDVSNPHSPVLI------ 207 (370)
T ss_pred ceeee------------------------eeccCCCCceeEEEe--cCeEEEEE-eCCCeEEEEccCCCCCeEE------
Confidence 33110 111112222344444 44444433 6888999999876654321
Q ss_pred ccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEE
Q 010390 266 SSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAY 345 (512)
Q Consensus 266 ~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~ 345 (512)
........+.++..+++-.+++.. +--+.+-|........+.-.........+. .+.-.+++......+.-+.
T Consensus 208 ---~~~n~g~g~~sv~vsdnr~y~vvy--~egvlivd~s~~ssp~~~gsyet~~p~~~s--~v~Vs~~~~Yvadga~gl~ 280 (370)
T COG5276 208 ---GSYNTGPGTYSVSVSDNRAYLVVY--DEGVLIVDVSGPSSPTVFGSYETSNPVSIS--TVPVSGEYAYVADGAKGLP 280 (370)
T ss_pred ---EEEecCCceEEEEecCCeeEEEEc--ccceEEEecCCCCCceEeeccccCCccccc--ceecccceeeeeccccCce
Confidence 111122257777777765555544 344666666543322222111111111111 2233455565555566677
Q ss_pred EEecCCCCC
Q 010390 346 VWQVNKPQA 354 (512)
Q Consensus 346 iw~~~~~~~ 354 (512)
+-|+.+...
T Consensus 281 ~idisnp~s 289 (370)
T COG5276 281 IIDISNPPS 289 (370)
T ss_pred eEeccCCCC
Confidence 777776544
No 484
>PF10214 Rrn6: RNA polymerase I-specific transcription-initiation factor; InterPro: IPR019350 RNA polymerase I-specific transcription-initiation factor Rrn6 and Rrn7 represent components of a multisubunit transcription factor essential for the initiation of rDNA transcription by Pol I []. These proteins are found in fungi.
Probab=81.63 E-value=76 Score=33.65 Aligned_cols=243 Identities=7% Similarity=0.065 Sum_probs=0.0
Q ss_pred ccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEEEEEee-----CCCCCeEEE
Q 010390 94 ENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIKSLCSH-----PTNSDILVS 168 (512)
Q Consensus 94 ~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~~l~~~-----~~~~~~l~s 168 (512)
.......+....|..+.+..++.......-.....+..+++--+.......-.-.-..+|..|+|. .+....++.
T Consensus 23 ~~~~~~i~A~asGesg~~L~L~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~w~i~~~~PI~qI~fa~~~~~~~~~~~~l~ 102 (765)
T PF10214_consen 23 GSRPVPILAFASGESGSVLRLSRLDEEEWSWGNNDDASLRVPTIDPELSGAWSIDDGSPIKQIKFATLSESFDEKSRWLA 102 (765)
T ss_pred CCceeEEEEEecCCCCCeeEEEEecccccccccccccccccCCCCccccceeEcCCCCCeeEEEecccccccCCcCcEEE
Q ss_pred EeCCCcEEEEe------CCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEEeecCCEEEEEeecC
Q 010390 169 GSRDGSFAIWD------LRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVN 242 (512)
Q Consensus 169 ~~~dg~i~vwd------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~d 242 (512)
.-....+.|+. +..............+.......-+.. +...++|+|....-++.-...
T Consensus 103 Vrt~~st~I~~p~~~~~~~~~~~~~s~i~~~~l~~i~~~~tgg~---------------~~aDv~FnP~~~~q~AiVD~~ 167 (765)
T PF10214_consen 103 VRTETSTTILRPEYHRVISSIRSRPSRIDPNPLLTISSSDTGGF---------------PHADVAFNPWDQRQFAIVDEK 167 (765)
T ss_pred EEcCCEEEEEEcccccccccccCCccccccceeEEechhhcCCC---------------ccceEEeccCccceEEEEecc
Q ss_pred CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccCCCCceEeeeeceecee
Q 010390 243 SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQLDKGPIQHFSGCRIESF 322 (512)
Q Consensus 243 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~~~~~~~~~~~~~~~~~ 322 (512)
|...|||+....... ...+-+.....|.| ++|.... ..
T Consensus 168 G~Wsvw~i~~~~~~~---------------------------~~~~~~~~~~~gsi-~~d~~e~--------------s~ 205 (765)
T PF10214_consen 168 GNWSVWDIKGRPKRK---------------------------SSNLRLSRNISGSI-IFDPEEL--------------SN 205 (765)
T ss_pred CcEEEEEeccccccC---------------------------CcceeeccCCCccc-cCCCccc--------------Cc
Q ss_pred EEEEEECCCCCEEEEecCCCCEEEEecCCCCCCC-ceeccccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 323 YVKSEICPNASHILSGSSDGNAYVWQVNKPQADP-IKLKSHDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 323 ~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~-~~~~~h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
...+.|.++.+.|+.++... +.++|+.+..... .........|.++.-++..+.+++.-.. ..|...++..
T Consensus 206 w~rI~W~~~~~~lLv~~r~~-l~~~d~~~~~~~~~l~~~~~~~~IlDv~~~~~~~~~~FiLTs-~eiiw~~~~~ 277 (765)
T PF10214_consen 206 WKRILWVSDSNRLLVCNRSK-LMLIDFESNWQTEYLVTAKTWSWILDVKRSPDNPSHVFILTS-KEIIWLDVKS 277 (765)
T ss_pred ceeeEecCCCCEEEEEcCCc-eEEEECCCCCccchhccCCChhheeeEEecCCccceEEEEec-CeEEEEEccC
No 485
>PF10168 Nup88: Nuclear pore component; InterPro: IPR019321 Nup88 can be divided into two structural domains; the N-terminal two-thirds of the protein have no obvious structural motifs. It is, however, where it binds to Nup98; one of the components of the nuclear pore. The C-terminal end is a predicted coiled-coil domain []. Nup88 is over expressed in tumour cells [].
Probab=81.26 E-value=74 Score=33.22 Aligned_cols=77 Identities=12% Similarity=0.142 Sum_probs=54.1
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCC----------CCee--e-ec-------c-cCcCCCEEEEEeeCCC--CC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAE----------KKKC--T-GA-------L-MGHTGSIKSLCSHPTN--SD 164 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~----------~~~~--~-~~-------~-~~h~~~v~~l~~~~~~--~~ 164 (512)
.-.|..|..+|+|++|+..|..| |.|-.+. .|+. . ++ + ..+...|..+.|+|.+ +.
T Consensus 84 ~f~v~~i~~n~~g~~lal~G~~~-v~V~~LP~r~g~~~~~~~g~~~i~Crt~~v~~~~~~~~~~~~i~qv~WhP~s~~~~ 162 (717)
T PF10168_consen 84 LFEVHQISLNPTGSLLALVGPRG-VVVLELPRRWGKNGEFEDGKKEINCRTVPVDERFFTSNSSLEIKQVRWHPWSESDS 162 (717)
T ss_pred ceeEEEEEECCCCCEEEEEcCCc-EEEEEeccccCccccccCCCcceeEEEEEechhhccCCCCceEEEEEEcCCCCCCC
Confidence 35799999999999999888776 4444432 1111 1 11 1 2344678999999974 46
Q ss_pred eEEEEeCCCcEEEEeCCCCCC
Q 010390 165 ILVSGSRDGSFAIWDLRCKSS 185 (512)
Q Consensus 165 ~l~s~~~dg~i~vwd~~~~~~ 185 (512)
.|+.-..|+++|+||+.....
T Consensus 163 ~l~vLtsdn~lR~y~~~~~~~ 183 (717)
T PF10168_consen 163 HLVVLTSDNTLRLYDISDPQH 183 (717)
T ss_pred eEEEEecCCEEEEEecCCCCC
Confidence 888888999999999975443
No 486
>KOG0918 consensus Selenium-binding protein [Inorganic ion transport and metabolism]
Probab=80.28 E-value=52 Score=30.81 Aligned_cols=114 Identities=7% Similarity=-0.011 Sum_probs=68.1
Q ss_pred CcEEEEeCCCCeeeecccCcC--CCEEEEEeeC--CCC-CeEEEEeCCCcEEEEeCCCCCCCCCccccceeeeccccccc
Q 010390 130 QTIKIWDAEKKKCTGALMGHT--GSIKSLCSHP--TNS-DILVSGSRDGSFAIWDLRCKSSPKSNCAESFVFSSAVVKGA 204 (512)
Q Consensus 130 g~i~iwd~~~~~~~~~~~~h~--~~v~~l~~~~--~~~-~~l~s~~~dg~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~ 204 (512)
..+.+|...+++..+++.-.. --+..+.|.. +.. -+.-++-.++.++++.....+... ...+. ..
T Consensus 229 ~~lhvy~w~~~~~~QtidL~~~gllpleiRfLh~p~~~~~fvg~Al~s~i~~~~k~~~~tws~----~~vis-vp----- 298 (476)
T KOG0918|consen 229 SHLHVYQWSPGELKQTIDLGDTGLLPLEIRFLHNPSKATGFVGCALSSNIFRFFKNSDDTWSA----EVVIS-VP----- 298 (476)
T ss_pred eeeEEEecCCccceeEEecCCCCcceEEeeeccCCCcccceeeeeccCCceeeeeccccccce----eEEEe-cC-----
Confidence 457889998888887775333 3456677743 221 133333445566766554321111 00000 00
Q ss_pred ccccccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCccce
Q 010390 205 HLLSQSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLKAQ 256 (512)
Q Consensus 205 ~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~ 256 (512)
...-.........+-|+.+..+-|.+++.+++-.-|.|+-||+.....+
T Consensus 299 ---~~kv~~w~~~eMP~LITDilISmDDRFLYvs~WLHGDirQYdIsDP~n~ 347 (476)
T KOG0918|consen 299 ---PLKVENWILPEMPGLITDILISLDDRFLYVSNWLHGDIRQYDISDPKNP 347 (476)
T ss_pred ---ccccccccCcccchhhheeEEeecCcEEEEEeeeecceeeeccCCCCCc
Confidence 0000112334556779999999999999999988999999999876654
No 487
>TIGR03548 mutarot_permut cyclically-permuted mutatrotase family protein. Members of this protein family show essentially full-length homology, cyclically permuted, to YjhT from Escherichia coli. YjhT was shown to act as a mutarotase for sialic acid, and by this ability to be able to act as a virulence factor. Members of the YjhT family (TIGR03547) and this cyclically-permuted family have multiple repeats of the beta-propeller-forming Kelch repeat.
Probab=79.71 E-value=52 Score=30.48 Aligned_cols=22 Identities=9% Similarity=-0.002 Sum_probs=13.7
Q ss_pred CCCEEEEEecCC----eEEEEEcccC
Q 010390 285 NGVFLTASCMDH----RIYLYNVLQL 306 (512)
Q Consensus 285 ~~~~l~~~~~dg----~i~i~d~~~~ 306 (512)
++++.+.|+.++ .+.+||..+.
T Consensus 171 ~~~iYv~GG~~~~~~~~~~~yd~~~~ 196 (323)
T TIGR03548 171 QNELYVFGGGSNIAYTDGYKYSPKKN 196 (323)
T ss_pred CCEEEEEcCCCCccccceEEEecCCC
Confidence 566777776653 3567887653
No 488
>TIGR03074 PQQ_membr_DH membrane-bound PQQ-dependent dehydrogenase, glucose/quinate/shikimate family. This protein family has a phylogenetic distribution very similar to that coenzyme PQQ biosynthesis enzymes, as shown by partial phylogenetic profiling. Members of this family have several predicted transmembrane helices in the N-terminal region, and include the quinoprotein glucose dehydrogenase (EC 1.1.5.2) of Escherichia coli and the quinate/shikimate dehydrogenase of Acinetobacter sp. ADP1 (EC 1.1.99.25). Sequences closely related except for the absense of the N-terminal hydrophobic region, scoring in the gray zone between the trusted and noise cutoffs, include PQQ-dependent glycerol (EC 1.1.99.22) and and other polyol (sugar alcohol) dehydrogenases.
Probab=79.52 E-value=88 Score=33.01 Aligned_cols=68 Identities=19% Similarity=0.277 Sum_probs=44.0
Q ss_pred CCEEEEEeCCCcEEEEeCCCCeeeecccCcCCCEE-------------EEEeeC--CCCCeEEEEeC----------CCc
Q 010390 120 DTNILTASGDQTIKIWDAEKKKCTGALMGHTGSIK-------------SLCSHP--TNSDILVSGSR----------DGS 174 (512)
Q Consensus 120 ~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~~~v~-------------~l~~~~--~~~~~l~s~~~----------dg~ 174 (512)
+..|+.++.|+.+.-.|.++|+....+.. .+.|. .+.-.| .+ ..++.|+. +|.
T Consensus 260 ~~rV~~~T~Dg~LiALDA~TGk~~W~fg~-~G~vdl~~~~g~~~~g~~~~ts~P~V~~-g~VIvG~~v~d~~~~~~~~G~ 337 (764)
T TIGR03074 260 ARRIILPTSDARLIALDADTGKLCEDFGN-NGTVDLTAGMGTTPPGYYYPTSPPLVAG-TTVVIGGRVADNYSTDEPSGV 337 (764)
T ss_pred CCEEEEecCCCeEEEEECCCCCEEEEecC-CCceeeecccCcCCCcccccccCCEEEC-CEEEEEecccccccccCCCcE
Confidence 45788888999999999999998876532 12211 001111 12 45666643 688
Q ss_pred EEEEeCCCCCCCCCc
Q 010390 175 FAIWDLRCKSSPKSN 189 (512)
Q Consensus 175 i~vwd~~~~~~~~~~ 189 (512)
|+-+|.++++..-..
T Consensus 338 I~A~Da~TGkl~W~~ 352 (764)
T TIGR03074 338 IRAFDVNTGALVWAW 352 (764)
T ss_pred EEEEECCCCcEeeEE
Confidence 999999999876543
No 489
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=79.51 E-value=43 Score=29.40 Aligned_cols=121 Identities=13% Similarity=0.227 Sum_probs=63.9
Q ss_pred eEEEeCCCCCEEEEEec-C--CeEEEEEcccCCCC-ceEeee-eceeceeEEEEEECCCCCEEEEecCCCC-EEEEecCC
Q 010390 278 SSLSQDSNGVFLTASCM-D--HRIYLYNVLQLDKG-PIQHFS-GCRIESFYVKSEICPNASHILSGSSDGN-AYVWQVNK 351 (512)
Q Consensus 278 ~~~~~~~~~~~l~~~~~-d--g~i~i~d~~~~~~~-~~~~~~-~~~~~~~~~~~~~s~~~~~l~~g~~dg~-i~iw~~~~ 351 (512)
.+=.+-+||++|.+|+. + ..+++++....... ...... ......+.-....-+||+.|+.|+.+.. ..+|.-..
T Consensus 70 Sgg~~L~dG~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e~~~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~ 149 (243)
T PF07250_consen 70 SGGAFLPDGRLLQTGGDNDGNKAIRIFTPCTSDGTCDWTESPNDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKG 149 (243)
T ss_pred cCcCCCCCCCEEEeCCCCccccceEEEecCCCCCCCCceECcccccCCCccccceECCCCCEEEEeCcCCCcccccCCcc
Confidence 33456789999999874 2 35888885431111 111111 1122233344556689999999887743 44444322
Q ss_pred CCCCCce---ecc-----ccCCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCCCccccc
Q 010390 352 PQADPIK---LKS-----HDGEVTAVNWCPNEAGKIVTSSDDYTVRLWSLENSRCSSM 401 (512)
Q Consensus 352 ~~~~~~~---~~~-----h~~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~~~~~~~ 401 (512)
....... +.. ....=--+...|+| ++++.+..+. .|||..+.+.++.
T Consensus 150 ~~~~~~~~~~l~~~~~~~~~nlYP~~~llPdG-~lFi~an~~s--~i~d~~~n~v~~~ 204 (243)
T PF07250_consen 150 PGPGPVTLPFLSQTSDTLPNNLYPFVHLLPDG-NLFIFANRGS--IIYDYKTNTVVRT 204 (243)
T ss_pred CCCCceeeecchhhhccCccccCceEEEcCCC-CEEEEEcCCc--EEEeCCCCeEEee
Confidence 1110111 110 00111235567899 8888887654 4668888766443
No 490
>COG5290 IkappaB kinase complex, IKAP component [Transcription]
Probab=79.35 E-value=73 Score=32.90 Aligned_cols=95 Identities=17% Similarity=0.199 Sum_probs=53.5
Q ss_pred EEEEeeCCCCCeEEEEeCCC-----cEEEEeCCCCCCCCCccccceeeecccccccccccccccceecccccccEEEEEE
Q 010390 154 KSLCSHPTNSDILVSGSRDG-----SFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSITSVLY 228 (512)
Q Consensus 154 ~~l~~~~~~~~~l~s~~~dg-----~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~ 228 (512)
..++|-|+| ..+++-+.|| .|+++.-+..+.- ......+-+..+..++|
T Consensus 250 ~~LSWkpqg-S~~ati~td~~~~S~~ViFfErNGLrHG-------------------------ef~lr~~~dEk~~~~~w 303 (1243)
T COG5290 250 HQLSWKPQG-SKYATIGTDGCSTSESVIFFERNGLRHG-------------------------EFDLRVGCDEKAFLENW 303 (1243)
T ss_pred hccccccCC-ceeeeeccCCCCCcceEEEEccCCcccC-------------------------CccccCCchhhhhhhhh
Confidence 457899998 7888877554 3555543321100 00011123345666777
Q ss_pred eecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 229 LKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 229 ~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
+-....++++ ....+++|-..+..-.... .....++.-+.|+|...
T Consensus 304 n~~s~vlav~--~~n~~~lwttkNyhWYLK~-----------e~~ip~~s~vkwhpe~~ 349 (1243)
T COG5290 304 NLLSTVLAVA--EGNLLKLWTTKNYHWYLKV-----------ERQIPGISYVKWHPEEK 349 (1243)
T ss_pred hHHHHHHHHh--hcceEEEEEccceEEEEEE-----------eecCCCcceeeeccccC
Confidence 7666666553 4678999988776544322 11223466677877543
No 491
>KOG4460 consensus Nuclear pore complex, Nup88/rNup84 component [Nuclear structure; Intracellular trafficking, secretion, and vesicular transport]
Probab=79.14 E-value=66 Score=31.39 Aligned_cols=27 Identities=0% Similarity=-0.012 Sum_probs=21.8
Q ss_pred CcEEEEEEecCCCEEEEEeCCCcEEEE
Q 010390 109 NAIFDLCWIKEDTNILTASGDQTIKIW 135 (512)
Q Consensus 109 ~~V~~l~~s~~~~~l~s~~~dg~i~iw 135 (512)
-.|..+..++.|..++-+|.+|.+.++
T Consensus 104 feV~~vl~s~~GS~VaL~G~~Gi~vMe 130 (741)
T KOG4460|consen 104 FEVYQVLLSPTGSHVALIGIKGLMVME 130 (741)
T ss_pred EEEEEEEecCCCceEEEecCCeeEEEE
Confidence 468888899999999988899965543
No 492
>COG3292 Predicted periplasmic ligand-binding sensor domain [Signal transduction mechanisms]
Probab=76.93 E-value=81 Score=31.22 Aligned_cols=70 Identities=14% Similarity=0.205 Sum_probs=46.6
Q ss_pred CCcEEEEEEecCCCEEEEEeCCCcEEEEeCCCCeeeecccCcC-CCEEEEEeeCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 108 QNAIFDLCWIKEDTNILTASGDQTIKIWDAEKKKCTGALMGHT-GSIKSLCSHPTNSDILVSGSRDGSFAIWDLRC 182 (512)
Q Consensus 108 ~~~V~~l~~s~~~~~l~s~~~dg~i~iwd~~~~~~~~~~~~h~-~~v~~l~~~~~~~~~l~s~~~dg~i~vwd~~~ 182 (512)
...|..+.+...| .|..|+.|| +..+|..+++.++.-.... .+|+.+.-.-. ..|..|+.+| |.+.+.+.
T Consensus 164 d~~V~aLv~D~~g-~lWvgT~dG-L~~fd~~~gkalql~s~~~dk~I~al~~d~q--g~LWVGTdqG-v~~~e~~G 234 (671)
T COG3292 164 DTPVVALVFDANG-RLWVGTPDG-LSYFDAGRGKALQLASPPLDKAINALIADVQ--GRLWVGTDQG-VYLQEAEG 234 (671)
T ss_pred CccceeeeeeccC-cEEEecCCc-ceEEccccceEEEcCCCcchhhHHHHHHHhc--CcEEEEeccc-eEEEchhh
Confidence 3567788887666 466788888 7788888888776554433 56666655544 3577777665 66666654
No 493
>KOG3616 consensus Selective LIM binding factor [Transcription]
Probab=76.50 E-value=41 Score=34.22 Aligned_cols=75 Identities=19% Similarity=0.291 Sum_probs=46.8
Q ss_pred CcceEEEEEecCCCcEEEEeeCCCcEEEEECCCCCCccccccccccccceeccccCCCcEEEEEEecCCCEEEEEeCCCc
Q 010390 52 PPLAVSFCKTSKNSHIFAVSDEDGYVSLFDSRRKLPSFACHRENAEKARISDWVAHQNAIFDLCWIKEDTNILTASGDQT 131 (512)
Q Consensus 52 ~v~~v~~~~~s~~~~~latg~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg~ 131 (512)
.+.+|+- +|.|.-++.+..||+|++|+........ +.+. ..+-..+.|... -|+++..|..
T Consensus 16 ~~~aiqs---hp~~~s~v~~~~d~si~lfn~~~r~qsk-----------i~~~---~~p~~nlv~tnh--gl~~~tsdrr 76 (1636)
T KOG3616|consen 16 FTTAIQS---HPGGQSFVLAHQDGSIILFNFIPRRQSK-----------ICEE---AKPKENLVFTNH--GLVTATSDRR 76 (1636)
T ss_pred eeeeeee---cCCCceEEEEecCCcEEEEeecccchhh-----------hhhh---cCCccceeeecc--ceEEEeccch
Confidence 4567776 8999999999999999999986543311 1111 122233445433 3677777888
Q ss_pred EEEEeCCCCeeeecc
Q 010390 132 IKIWDAEKKKCTGAL 146 (512)
Q Consensus 132 i~iwd~~~~~~~~~~ 146 (512)
+.-|. ++|...+.+
T Consensus 77 ~la~~-~dgvvqqqf 90 (1636)
T KOG3616|consen 77 ALAWK-EDGVVQQQF 90 (1636)
T ss_pred hheee-ccCcchhhc
Confidence 88886 344333333
No 494
>COG3823 Glutamine cyclotransferase [Posttranslational modification, protein turnover, chaperones]
Probab=75.45 E-value=49 Score=27.98 Aligned_cols=153 Identities=7% Similarity=0.063 Sum_probs=78.2
Q ss_pred cCCEEEEEeec-CCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEE-EEecCCeEEEEEcccCCC
Q 010390 231 DEVSIATASAV-NSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLT-ASCMDHRIYLYNVLQLDK 308 (512)
Q Consensus 231 ~~~~l~~~g~~-dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~-~~~~dg~i~i~d~~~~~~ 308 (512)
++..+.++|-. ...|++||+.+++.........+ .....+++. -+..+. ..=.+|.-..+|..+.+.
T Consensus 55 ~g~i~esTG~yg~S~ir~~~L~~gq~~~s~~l~~~------~~FgEGit~-----~gd~~y~LTw~egvaf~~d~~t~~~ 123 (262)
T COG3823 55 DGHILESTGLYGFSKIRVSDLTTGQEIFSEKLAPD------TVFGEGITK-----LGDYFYQLTWKEGVAFKYDADTLEE 123 (262)
T ss_pred CCEEEEeccccccceeEEEeccCceEEEEeecCCc------cccccceee-----ccceEEEEEeccceeEEEChHHhhh
Confidence 44445554422 34799999999887765443311 001111111 122222 222677888888776554
Q ss_pred CceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecCCCCCCCc---eeccc-cCCeEEEEeCCCCCCeEEEEeC
Q 010390 309 GPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVNKPQADPI---KLKSH-DGEVTAVNWCPNEAGKIVTSSD 384 (512)
Q Consensus 309 ~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~~~~~~~~---~~~~h-~~~v~~v~~~~~~~~~l~s~~~ 384 (512)
.-...+.+.. -....|+.-|+.++...+++.-|-.+...... +..+. -..++-+.|- +| .+.|-.-.
T Consensus 124 lg~~~y~GeG-------WgLt~d~~~LimsdGsatL~frdP~tfa~~~~v~VT~~g~pv~~LNELE~V-dG-~lyANVw~ 194 (262)
T COG3823 124 LGRFSYEGEG-------WGLTSDDKNLIMSDGSATLQFRDPKTFAELDTVQVTDDGVPVSKLNELEWV-DG-ELYANVWQ 194 (262)
T ss_pred hcccccCCcc-------eeeecCCcceEeeCCceEEEecCHHHhhhcceEEEEECCeecccccceeee-cc-EEEEeeee
Confidence 4444444432 12234555566665555666666554332211 11111 1233445554 34 45555556
Q ss_pred CCcEEEEeCCCCccccccc
Q 010390 385 DYTVRLWSLENSRCSSMRS 403 (512)
Q Consensus 385 dg~i~vwd~~~~~~~~~~~ 403 (512)
+..|..-+.++|+.+....
T Consensus 195 t~~I~rI~p~sGrV~~wid 213 (262)
T COG3823 195 TTRIARIDPDSGRVVAWID 213 (262)
T ss_pred ecceEEEcCCCCcEEEEEE
Confidence 6677777888887766544
No 495
>KOG1898 consensus Splicing factor 3b, subunit 3 [RNA processing and modification]
Probab=74.74 E-value=1.3e+02 Score=32.40 Aligned_cols=109 Identities=11% Similarity=0.091 Sum_probs=65.9
Q ss_pred EEeecCCEEEEEeecCCeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEecCCeEEEEEcccC
Q 010390 227 LYLKDEVSIATASAVNSIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASCMDHRIYLYNVLQL 306 (512)
Q Consensus 227 ~~~~~~~~l~~~g~~dg~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~~dg~i~i~d~~~~ 306 (512)
+..|....+++ | ....+++||+-..+...... .......|..+.+ .+..+++|...-.+.++-.+..
T Consensus 940 Ai~~f~~~~La-g-vG~~l~~YdlG~K~lLRk~e---------~k~~p~~Is~iqt--~~~RI~VgD~qeSV~~~~y~~~ 1006 (1205)
T KOG1898|consen 940 AICPFQGRVLA-G-VGRFLRLYDLGKKKLLRKCE---------LKFIPNRISSIQT--YGARIVVGDIQESVHFVRYRRE 1006 (1205)
T ss_pred EEeccCCEEEE-e-cccEEEEeeCChHHHHhhhh---------hccCceEEEEEee--cceEEEEeeccceEEEEEEecC
Confidence 44565556654 4 57899999998877655432 1112234555555 4567888877667776665443
Q ss_pred CCCceEeeeeceeceeEEEEEECCCCCEEEEecCCCCEEEEecC
Q 010390 307 DKGPIQHFSGCRIESFYVKSEICPNASHILSGSSDGNAYVWQVN 350 (512)
Q Consensus 307 ~~~~~~~~~~~~~~~~~~~~~~s~~~~~l~~g~~dg~i~iw~~~ 350 (512)
...+..+.......+++++.+ -|...+|.+..=|.+.+-.+.
T Consensus 1007 -~n~l~~fadD~~pR~Vt~~~~-lD~~tvagaDrfGNi~~vR~P 1048 (1205)
T KOG1898|consen 1007 -DNQLIVFADDPVPRHVTALEL-LDYDTVAGADRFGNIAVVRIP 1048 (1205)
T ss_pred -CCeEEEEeCCCccceeeEEEE-ecCCceeeccccCcEEEEECC
Confidence 334455555554555555444 455667777777777776654
No 496
>PF08801 Nucleoporin_N: Nup133 N terminal like; InterPro: IPR014908 Nucleoporins are the main components of the nuclear pore complex (NPC) in eukaryotic cells, and mediate bidirectional nucleocytoplasmic transport, especially of mRNA and proteins. RNA undergoing nuclear export first encounters the basket of the nuclear pore and many nucleoporins are accessible on the basket side of the pore [, ]. This entry represents the N-terminal of Nucleoprotein which forms a seven-bladed beta propeller structure []. ; PDB: 1XKS_A.
Probab=73.87 E-value=90 Score=30.27 Aligned_cols=31 Identities=19% Similarity=0.381 Sum_probs=25.1
Q ss_pred CCeEEEEeCCCCCCeEEEEeCCCcEEEEeCCC
Q 010390 364 GEVTAVNWCPNEAGKIVTSSDDYTVRLWSLEN 395 (512)
Q Consensus 364 ~~v~~v~~~~~~~~~l~s~~~dg~i~vwd~~~ 395 (512)
..|.+++..+.. +.|++...+|.|.+|++..
T Consensus 190 ~~I~~v~~d~~r-~~ly~l~~~~~Iq~w~l~~ 220 (422)
T PF08801_consen 190 PKIVQVAVDPSR-RLLYTLTSDGSIQVWDLGP 220 (422)
T ss_dssp --EEEEEEETTT-TEEEEEESSE-EEEEEE-S
T ss_pred hceeeEEecCCc-CEEEEEeCCCcEEEEEEeC
Confidence 349999998888 8999999999999999974
No 497
>PF07250 Glyoxal_oxid_N: Glyoxal oxidase N-terminus; InterPro: IPR009880 This entry represents the N terminus (approximately 300 residues) of a number of plant and fungal glyoxal oxidase enzymes. Glyoxal oxidase catalyses the oxidation of aldehydes to carboxylic acids, coupled with reduction of dioxygen to hydrogen peroxide. It is an essential component of the extracellular lignin degradation pathways of the wood-rot fungus Phanerochaete chrysosporium [].
Probab=72.76 E-value=66 Score=28.25 Aligned_cols=147 Identities=9% Similarity=0.087 Sum_probs=69.0
Q ss_pred EEEEeCCCCeeeecccCcCCCEEEEEeeCCCCCeEEEEeCC---CcEEEEeCCCCCCCCCccccceeeeccccccccccc
Q 010390 132 IKIWDAEKKKCTGALMGHTGSIKSLCSHPTNSDILVSGSRD---GSFAIWDLRCKSSPKSNCAESFVFSSAVVKGAHLLS 208 (512)
Q Consensus 132 i~iwd~~~~~~~~~~~~h~~~v~~l~~~~~~~~~l~s~~~d---g~i~vwd~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 208 (512)
-.+||+.+++....-....-...+-.+.++| .+|.+|+.. ..+++++............
T Consensus 48 s~~yD~~tn~~rpl~v~td~FCSgg~~L~dG-~ll~tGG~~~G~~~ir~~~p~~~~~~~~w~e----------------- 109 (243)
T PF07250_consen 48 SVEYDPNTNTFRPLTVQTDTFCSGGAFLPDG-RLLQTGGDNDGNKAIRIFTPCTSDGTCDWTE----------------- 109 (243)
T ss_pred EEEEecCCCcEEeccCCCCCcccCcCCCCCC-CEEEeCCCCccccceEEEecCCCCCCCCceE-----------------
Confidence 3578988875432222122223334577877 888888752 3577777543000000000
Q ss_pred ccccceecccccccEEEEEEeecCCEEEEEeecCCeEEEEeccCcc-ceecccCCCccccccccccccCeeEEEeCCCCC
Q 010390 209 QSKRVSRRKAASMSITSVLYLKDEVSIATASAVNSIVKFWDTRNLK-AQITQAWPHAESSSAKETRLHGISSLSQDSNGV 287 (512)
Q Consensus 209 ~~~~~~~~~~~~~~v~~~~~~~~~~~l~~~g~~dg~i~iwd~~~~~-~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~ 287 (512)
.. ........=-.+.-.+||+.+++.|...-...+|.-.... .......... . .......---.+...|+|+
T Consensus 110 ~~----~~m~~~RWYpT~~~L~DG~vlIvGG~~~~t~E~~P~~~~~~~~~~~~~l~~-~--~~~~~~nlYP~~~llPdG~ 182 (243)
T PF07250_consen 110 SP----NDMQSGRWYPTATTLPDGRVLIVGGSNNPTYEFWPPKGPGPGPVTLPFLSQ-T--SDTLPNNLYPFVHLLPDGN 182 (243)
T ss_pred Cc----ccccCCCccccceECCCCCEEEEeCcCCCcccccCCccCCCCceeeecchh-h--hccCccccCceEEEcCCCC
Confidence 00 0001111223445567999999877654455555542211 1110000000 0 0001111233567789999
Q ss_pred EEEEEecCCeEEEEEccc
Q 010390 288 FLTASCMDHRIYLYNVLQ 305 (512)
Q Consensus 288 ~l~~~~~dg~i~i~d~~~ 305 (512)
+++.+..+.. +||...
T Consensus 183 lFi~an~~s~--i~d~~~ 198 (243)
T PF07250_consen 183 LFIFANRGSI--IYDYKT 198 (243)
T ss_pred EEEEEcCCcE--EEeCCC
Confidence 9988876544 446543
No 498
>PF13449 Phytase-like: Esterase-like activity of phytase
Probab=72.21 E-value=84 Score=29.19 Aligned_cols=186 Identities=10% Similarity=0.062 Sum_probs=90.5
Q ss_pred CCEEEEEeeCCCCCeEEEEeCCCc------EEEEeCCCCCC-CCCccccceeeecccccccccccccccceecccccccE
Q 010390 151 GSIKSLCSHPTNSDILVSGSRDGS------FAIWDLRCKSS-PKSNCAESFVFSSAVVKGAHLLSQSKRVSRRKAASMSI 223 (512)
Q Consensus 151 ~~v~~l~~~~~~~~~l~s~~~dg~------i~vwd~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v 223 (512)
+.+..|.+.+.+ ..+++.+.+|. +...++..... ..... ......+.... -..+.......
T Consensus 20 GGlSgl~~~~~~-~~~~avSD~g~~~~~~~~~~~~~~~~~~~~~~~~---------~~~~~~L~~~~--G~~~~~~~~D~ 87 (326)
T PF13449_consen 20 GGLSGLDYDPDD-GRFYAVSDRGPNKGPPRFYTFRIDYDQGGIGGVT---------ILDMIPLRDPD--GQPFPKNGLDP 87 (326)
T ss_pred CcEeeEEEeCCC-CEEEEEECCCCCCCCCcEEEEEeeccCCCccceE---------eccceeccCCC--CCcCCcCCCCh
Confidence 567888898755 56777777777 65555543111 00000 00000000000 00111112255
Q ss_pred EEEEEeecCCEEEEEeecC------CeEEEEeccCccceecccCCCcccc-c---cccccccCeeEEEeCCCCCEEEEEe
Q 010390 224 TSVLYLKDEVSIATASAVN------SIVKFWDTRNLKAQITQAWPHAESS-S---AKETRLHGISSLSQDSNGVFLTASC 293 (512)
Q Consensus 224 ~~~~~~~~~~~l~~~g~~d------g~i~iwd~~~~~~~~~~~~~~~~~~-~---~~~~~~~~i~~~~~~~~~~~l~~~~ 293 (512)
.+|++.+++..+++ ...+ ..|..++.. ++.......|..... . .......++.+|+++|+|+.|+++.
T Consensus 88 Egi~~~~~g~~~is-~E~~~~~~~~p~I~~~~~~-G~~~~~~~vP~~~~~~~~~~~~~~~N~G~E~la~~~dG~~l~~~~ 165 (326)
T PF13449_consen 88 EGIAVPPDGSFWIS-SEGGRTGGIPPRIRRFDLD-GRVIRRFPVPAAFLPDANGTSGRRNNRGFEGLAVSPDGRTLFAAM 165 (326)
T ss_pred hHeEEecCCCEEEE-eCCccCCCCCCEEEEECCC-CcccceEccccccccccCccccccCCCCeEEEEECCCCCEEEEEE
Confidence 67888667766665 4334 567777766 444333322221100 0 2334556799999999999766654
Q ss_pred cC-----C--e-------EEEEEcccCC-C--CceEeeeece-----eceeEEEEEECCCCCEEEEec-----CCCCEEE
Q 010390 294 MD-----H--R-------IYLYNVLQLD-K--GPIQHFSGCR-----IESFYVKSEICPNASHILSGS-----SDGNAYV 346 (512)
Q Consensus 294 ~d-----g--~-------i~i~d~~~~~-~--~~~~~~~~~~-----~~~~~~~~~~s~~~~~l~~g~-----~dg~i~i 346 (512)
.. + . ++++...... . .....+.-.. ....+..+.+-+++++|+.=- ....++|
T Consensus 166 E~~l~~d~~~~~~~~~~~~ri~~~d~~~~~~~~~~~~y~ld~~~~~~~~~~isd~~al~d~~lLvLER~~~~~~~~~~ri 245 (326)
T PF13449_consen 166 ESPLKQDGPRANPDNGSPLRILRYDPKTPGEPVAEYAYPLDPPPTAPGDNGISDIAALPDGRLLVLERDFSPGTGNYKRI 245 (326)
T ss_pred CccccCCCcccccccCceEEEEEecCCCCCccceEEEEeCCccccccCCCCceeEEEECCCcEEEEEccCCCCccceEEE
Confidence 32 2 1 4554443221 1 1111222111 234466788888888776421 2345566
Q ss_pred EecC
Q 010390 347 WQVN 350 (512)
Q Consensus 347 w~~~ 350 (512)
+.+.
T Consensus 246 ~~v~ 249 (326)
T PF13449_consen 246 YRVD 249 (326)
T ss_pred EEEE
Confidence 5443
No 499
>KOG2109 consensus WD40 repeat protein [General function prediction only]
Probab=71.92 E-value=9.3 Score=37.88 Aligned_cols=74 Identities=22% Similarity=0.429 Sum_probs=46.3
Q ss_pred ceeccccCCCcEEEEEEecCCCEEEEEeCCC-cEEEEeCCCCee-----eecccCc-----CCCEEEEEeeCCCCCeEEE
Q 010390 100 RISDWVAHQNAIFDLCWIKEDTNILTASGDQ-TIKIWDAEKKKC-----TGALMGH-----TGSIKSLCSHPTNSDILVS 168 (512)
Q Consensus 100 ~~~~~~~h~~~V~~l~~s~~~~~l~s~~~dg-~i~iwd~~~~~~-----~~~~~~h-----~~~v~~l~~~~~~~~~l~s 168 (512)
.+.+++.|+.++..++|.+.+..|++++-.| .|.++.+....+ ...+..| ...+..++|+... +++..
T Consensus 307 ~i~QfkAhkspiSaLcfdqsgsllViasi~g~nVnvfRimet~~t~~~~~qs~~~s~ra~t~aviqdicfs~~s-~~r~~ 385 (788)
T KOG2109|consen 307 DIRQFKAHKSPISALCFDQSGSLLVIASITGRNVNVFRIMETVCTVNVSDQSLVVSPRANTAAVIQDICFSEVS-TIRTA 385 (788)
T ss_pred hhhheeeecCcccccccccCceEEEEEeeccceeeeEEeccccccccccccccccchhcchHHHHHHHhhhhhc-ceEee
Confidence 3778899999999999999999999888765 344443322111 1111111 1123456677665 67777
Q ss_pred EeCCCc
Q 010390 169 GSRDGS 174 (512)
Q Consensus 169 ~~~dg~ 174 (512)
++.+|.
T Consensus 386 gsc~Ge 391 (788)
T KOG2109|consen 386 GSCEGE 391 (788)
T ss_pred cccCCC
Confidence 776654
No 500
>PF12768 Rax2: Cortical protein marker for cell polarity
Probab=71.78 E-value=60 Score=29.30 Aligned_cols=98 Identities=12% Similarity=0.087 Sum_probs=52.3
Q ss_pred CeEEEEeccCccceecccCCCccccccccccccCeeEEEeCCCCCEEEEEe------cCCeEEEEEcccCCCCceEeeee
Q 010390 243 SIVKFWDTRNLKAQITQAWPHAESSSAKETRLHGISSLSQDSNGVFLTASC------MDHRIYLYNVLQLDKGPIQHFSG 316 (512)
Q Consensus 243 g~i~iwd~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~~~l~~~~------~dg~i~i~d~~~~~~~~~~~~~~ 316 (512)
..|++||..+.+-.. ....-.+.|+.|.|..+.++++.|. ....+..||..+.....+..-..
T Consensus 16 ~~lC~yd~~~~qW~~-----------~g~~i~G~V~~l~~~~~~~Llv~G~ft~~~~~~~~la~yd~~~~~w~~~~~~~s 84 (281)
T PF12768_consen 16 PGLCLYDTDNSQWSS-----------PGNGISGTVTDLQWASNNQLLVGGNFTLNGTNSSNLATYDFKNQTWSSLGGGSS 84 (281)
T ss_pred CEEEEEECCCCEeec-----------CCCCceEEEEEEEEecCCEEEEEEeeEECCCCceeEEEEecCCCeeeecCCccc
Confidence 458999987655332 1223456799999987777777765 34568889876532211111000
Q ss_pred ceeceeEEEEEEC-CCC-CEEEEec-CCC--CEEEEecCC
Q 010390 317 CRIESFYVKSEIC-PNA-SHILSGS-SDG--NAYVWQVNK 351 (512)
Q Consensus 317 ~~~~~~~~~~~~s-~~~-~~l~~g~-~dg--~i~iw~~~~ 351 (512)
......+..+.+. .|+ ++.++|. .+| .|..||=.+
T Consensus 85 ~~ipgpv~a~~~~~~d~~~~~~aG~~~~g~~~l~~~dGs~ 124 (281)
T PF12768_consen 85 NSIPGPVTALTFISNDGSNFWVAGRSANGSTFLMKYDGSS 124 (281)
T ss_pred ccCCCcEEEEEeeccCCceEEEeceecCCCceEEEEcCCc
Confidence 1223445445442 233 3444444 333 356665443
Done!